PeakID (cmd=annotatePeaks.pl S15_S15_SEACR.relaxed.bed hg38 -annStats S15_S15_SEACR.relaxed.log) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type chrX-21 99415907 99416238 201 - chrX:99415973-99416148 NA NA NA NA NA chrX-20 87993458 87993688 165 - chrX:87993501-87993601 NA NA NA NA NA chrX-19 87984566 87984787 174 - chrX:87984619-87984746 NA NA NA NA NA chrX-18 87662022 87662410 223 - chrX:87662033-87662223 NA NA NA NA NA chrX-17 81890494 81890874 232 - chrX:81890620-81890778 NA NA NA NA NA chrX-16 81497179 81497460 199 - chrX:81497272-81497389 NA NA NA NA NA chrX-15 75623706 75623966 172 - chrX:75623714-75623798 NA NA NA NA NA chrX-14 75370253 75370617 201 - chrX:75370388-75370440 NA NA NA NA NA chrX-13 69201857 69202265 256 - chrX:69202027-69202131 NA NA NA NA NA chrX-12 66326397 66326662 165 - chrX:66326534-66326636 NA NA NA NA NA chrX-11 63754813 63755234 242 - chrX:63755103-63755166 NA NA NA NA NA chrX-10 57967671 57967922 198 - chrX:57967726-57967818 NA NA NA NA NA chrX-9 57944968 57945245 199 - chrX:57945120-57945204 NA NA NA NA NA chrX-8 57817479 57817840 338 - chrX:57817548-57817840 NA NA NA NA NA chrX 5470032 5470386 224 - chrX:5470195-5470322 NA NA NA NA NA chrX-7 48911715 48912024 266 - chrX:48911720-48912006 NA NA NA NA NA chrX-6 41481198 41481668 432 - chrX:41481198-41481440 NA NA NA NA NA chrX-5 39196320 39196678 223 - chrX:39196460-39196561 NA NA NA NA NA chrX-4 36402111 36402487 214 - chrX:36402261-36402394 NA NA NA NA NA chrX-3 34301512 34301979 270 - chrX:34301639-34301642 NA NA NA NA NA chrX-2 24054273 24054910 277 - chrX:24054304-24054324 NA NA NA NA NA chrX-29 152915571 152915864 247 - chrX:152915624-152915825 NA NA NA NA NA chrX-28 152847568 152847987 210 - chrX:152847738-152847739 NA NA NA NA NA chrX-27 151715095 151715386 178 - chrX:151715134-151715236 NA NA NA NA NA chrX-26 149895039 149895451 214 - chrX:149895055-149895162 NA NA NA NA NA chrX-25 145717841 145718136 229 - chrX:145717925-145718088 NA NA NA NA NA chrX-24 136933590 136933923 217 - chrX:136933702-136933803 NA NA NA NA NA chrX-23 105190203 105190481 266 - chrX:105190204-105190474 NA NA NA NA NA chrX-22 103818031 103818385 248 - chrX:103818140-103818282 NA NA NA NA NA chr9-47 99890469 99890720 211 - chr9:99890470-99890661 NA NA NA NA NA chr9-4 9943051 9943401 207 - chr9:9943069-9943239 NA NA NA NA NA chr9-46 97709250 97709489 179 - chr9:97709360-97709454 NA NA NA NA NA chr9-45 96342792 96343467 251 - chr9:96343261-96343268 NA NA NA NA NA chr9-44 95759783 95760200 231 - chr9:95759905-95759950 NA NA NA NA NA chr9-43 93747239 93747745 273 - chr9:93747331-93747371 NA NA NA NA NA chr9-42 92181207 92181404 165 - chr9:92181229-92181367 NA NA NA NA NA chr9-41 91659405 91659592 175 - chr9:91659409-91659578 NA NA NA NA NA chr9-40 88109030 88109437 296 - chr9:88109086-88109271 NA NA NA NA NA chr9-39 87479890 87480379 275 - chr9:87479954-87480091 NA NA NA NA NA chr9-38 87293640 87294040 271 - chr9:87293670-87293812 NA NA NA NA NA chr9-37 86750139 86750434 173 - chr9:86750321-86750372 NA NA NA NA NA chr9-36 85974486 85975161 431 - chr9:85974488-85974727 NA NA NA NA NA chr9-35 85482148 85482542 303 - chr9:85482197-85482409 NA NA NA NA NA chr9-34 84404015 84404225 166 - chr9:84404071-84404207 NA NA NA NA NA chr9-33 84322740 84323121 231 - chr9:84323004-84323121 NA NA NA NA NA chr9-32 84286806 84287243 287 - chr9:84286945-84287082 NA NA NA NA NA chr9-31 83938039 83938476 355 - chr9:83938082-83938199 NA NA NA NA NA chr9-30 79830961 79831351 218 - chr9:79831203-79831249 NA NA NA NA NA chr9-29 77682125 77682423 177 - chr9:77682256-77682304 NA NA NA NA NA chr9-28 77252174 77252436 173 - chr9:77252318-77252358 NA NA NA NA NA chr9-27 76188001 76188227 189 - chr9:76188028-76188188 NA NA NA NA NA chr9-26 75198147 75198555 298 - chr9:75198204-75198339 NA NA NA NA NA chr9-25 68643032 68643367 227 - chr9:68643088-68643155 NA NA NA NA NA chr9-3 4137693 4137935 221 - chr9:4137706-4137906 NA NA NA NA NA chr9-2 3746289 3746796 182 - chr9:3746384-3746501 NA NA NA NA NA chr9-24 37262982 37263299 196 - chr9:37263083-37263158 NA NA NA NA NA chr9-23 36992557 36992900 221 - chr9:36992668-36992756 NA NA NA NA NA chr9-22 36731689 36732049 306 - chr9:36731712-36731933 NA NA NA NA NA chr9-21 35958256 35958499 170 - chr9:35958369-35958446 NA NA NA NA NA chr9-20 35480740 35481011 240 - chr9:35480824-35481002 NA NA NA NA NA chr9-19 35071622 35072207 343 - chr9:35072051-35072052 NA NA NA NA NA chr9-18 33982022 33982579 287 - chr9:33982296-33982313 NA NA NA NA NA chr9-17 33321802 33322281 248 - chr9:33322003-33322035 NA NA NA NA NA chr9-16 32517906 32518283 191 - chr9:32517952-32518027 NA NA NA NA NA chr9-15 30534663 30535166 254 - chr9:30534785-30534790 NA NA NA NA NA chr9-14 28296402 28296625 198 - chr9:28296422-28296599 NA NA NA NA NA chr9-13 28087159 28087407 217 - chr9:28087159-28087345 NA NA NA NA NA chr9-12 27758611 27759098 218 - chr9:27758902-27758939 NA NA NA NA NA chr9-11 27572921 27573200 177 - chr9:27573008-27573083 NA NA NA NA NA chr9-10 27561536 27561784 170 - chr9:27561638-27561718 NA NA NA NA NA chr9-9 23292517 23292886 188 - chr9:23292548-23292675 NA NA NA NA NA chr9-8 19465908 19466155 169 - chr9:19465968-19466098 NA NA NA NA NA chr9-7 16678158 16678559 185 - chr9:16678471-16678537 NA NA NA NA NA chr9 1430005 1430262 217 - chr9:1430019-1430170 NA NA NA NA NA chr9-70 136489369 136489814 196 - chr9:136489438-136489529 NA NA NA NA NA chr9-69 136283876 136284281 185 - chr9:136283888-136283923 NA NA NA NA NA chr9-68 136089765 136090155 218 - chr9:136089799-136089845 NA NA NA NA NA chr9-67 133159692 133160273 289 - chr9:133159979-133159980 NA NA NA NA NA chr9-66 133032096 133032446 228 - chr9:133032248-133032354 NA NA NA NA NA chr9-65 132573389 132573750 193 - chr9:132573401-132573510 NA NA NA NA NA chr9-64 132256990 132257285 236 - chr9:132256997-132257174 NA NA NA NA NA chr9-6 13160401 13160735 294 - chr9:13160463-13160677 NA NA NA NA NA chr9-63 124621708 124622092 194 - chr9:124621890-124621898 NA NA NA NA NA chr9-62 120783594 120784024 206 - chr9:120783828-120783850 NA NA NA NA NA chr9-61 118527355 118527714 165 - chr9:118527633-118527701 NA NA NA NA NA chr9-60 116589623 116589981 286 - chr9:116589705-116589929 NA NA NA NA NA chr9-59 115052453 115052727 208 - chr9:115052568-115052644 NA NA NA NA NA chr9-58 114082058 114082643 260 - chr9:114082254-114082449 NA NA NA NA NA chr9-5 11390569 11390820 183 - chr9:11390590-11390739 NA NA NA NA NA chr9-57 113879272 113879636 209 - chr9:113879444-113879622 NA NA NA NA NA chr9-56 109062438 109062878 258 - chr9:109062705-109062713 NA NA NA NA NA chr9-55 108468184 108468561 301 - chr9:108468280-108468548 NA NA NA NA NA chr9-54 108373116 108373394 165 - chr9:108373205-108373269 NA NA NA NA NA chr9-53 107750792 107751104 184 - chr9:107750805-107750953 NA NA NA NA NA chr9-52 106076284 106076602 203 - chr9:106076284-106076465 NA NA NA NA NA chr9-51 103337996 103338464 283 - chr9:103338120-103338218 NA NA NA NA NA chr9-50 103095753 103096155 303 - chr9:103095933-103096038 NA NA NA NA NA chr9-49 102514717 102515027 255 - chr9:102514819-102515019 NA NA NA NA NA chr9-48 100621036 100621771 297 - chr9:100621512-100621523 NA NA NA NA NA chr8-64 98383042 98383633 397 - chr8:98383255-98383311 NA NA NA NA NA chr8-63 98358069 98358635 343 - chr8:98358257-98358294 NA NA NA NA NA chr8-62 95812196 95812571 291 - chr8:95812346-95812553 NA NA NA NA NA chr8-61 95064941 95065133 181 - chr8:95064956-95065126 NA NA NA NA NA chr8-60 94357031 94357292 187 - chr8:94357253-94357292 NA NA NA NA NA chr8-59 93822256 93822789 228 - chr8:93822386-93822452 NA NA NA NA NA chr8-58 90182345 90182738 260 - chr8:90182479-90182606 NA NA NA NA NA chr8-57 89878147 89878464 215 - chr8:89878296-89878409 NA NA NA NA NA chr8-56 89399157 89399502 184 - chr8:89399300-89399332 NA NA NA NA NA chr8-55 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239 - chr8:73518280-73518351 NA NA NA NA NA chr8-40 73037093 73037412 240 - chr8:73037093-73037175 NA NA NA NA NA chr8-39 72851855 72852833 252 - chr8:72851878-72851925 NA NA NA NA NA chr8-38 72283036 72283308 171 - chr8:72283151-72283235 NA NA NA NA NA chr8-2 6917939 6918240 191 - chr8:6918019-6918100 NA NA NA NA NA chr8-37 68594398 68594703 220 - chr8:68594568-68594703 NA NA NA NA NA chr8-36 66733789 66734096 225 - chr8:66733893-66734077 NA NA NA NA NA chr8-35 66649944 66650265 170 - chr8:66650154-66650173 NA NA NA NA NA chr8-34 64747026 64747316 171 - chr8:64747229-64747281 NA NA NA NA NA chr8-33 64601231 64601640 255 - chr8:64601459-64601560 NA NA NA NA NA chr8-32 63110517 63110800 183 - chr8:63110622-63110705 NA NA NA NA NA chr8-31 62984731 62985083 224 - chr8:62984900-62985060 NA NA NA NA NA chr8-30 62727278 62727783 242 - chr8:62727383-62727522 NA NA NA NA NA chr8-29 62126246 62126576 184 - chr8:62126427-62126538 NA NA NA NA NA chr8-28 54627900 54628345 232 - 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NA NA NA NA chr8-14 30041103 30041328 209 - chr8:30041125-30041318 NA NA NA NA NA chr8-13 28972461 28972779 179 - chr8:28972555-28972595 NA NA NA NA NA chr8-12 28919641 28919895 200 - chr8:28919656-28919802 NA NA NA NA NA chr8-11 24044235 24044744 322 - chr8:24044320-24044368 NA NA NA NA NA chr8-10 23454231 23454674 238 - chr8:23454393-23454590 NA NA NA NA NA chr8-9 21574434 21574822 246 - chr8:21574555-21574659 NA NA NA NA NA chr8-8 21398001 21398583 366 - chr8:21398313-21398415 NA NA NA NA NA chr8-7 20380644 20380984 268 - chr8:20380702-20380942 NA NA NA NA NA chr8-6 16604012 16604323 180 - chr8:16604060-16604153 NA NA NA NA NA chr8-5 15043186 15043729 312 - chr8:15043519-15043592 NA NA NA NA NA chr8-124 144509871 144510081 181 - chr8:144509892-144510048 NA NA NA NA NA chr8-123 144072728 144073193 344 - chr8:144072818-144073041 NA NA NA NA NA chr8-122 144014650 144014964 172 - chr8:144014732-144014833 NA NA NA NA NA chr8-121 143985923 143986111 175 - chr8:143985938-143986108 NA NA NA NA NA chr8-120 143198494 143198883 317 - chr8:143198568-143198741 NA NA NA NA NA chr8-119 142002817 142003348 292 - chr8:142003059-142003112 NA NA NA NA NA chr8-118 141508145 141508674 382 - chr8:141508306-141508600 NA NA NA NA NA chr8-117 141199645 141200002 197 - chr8:141199744-141199909 NA NA NA NA NA chr8-116 140763556 140763820 177 - chr8:140763695-140763759 NA NA NA NA NA chr8-115 139127487 139128079 291 - chr8:139127570-139127669 NA NA NA NA NA chr8-114 139041144 139041504 183 - chr8:139041346-139041452 NA NA NA NA NA chr8-113 138680592 138680944 202 - chr8:138680593-138680689 NA NA NA NA NA chr8-112 138074396 138074725 177 - chr8:138074498-138074523 NA NA NA NA NA chr8-4 13780708 13780952 208 - chr8:13780778-13780950 NA NA NA NA NA chr8-111 136848123 136848419 172 - chr8:136848182-136848292 NA NA NA NA NA chr8-110 135611216 135611723 315 - chr8:135611504-135611723 NA NA NA NA NA chr8-109 135443498 135443876 246 - chr8:135443679-135443793 NA NA NA NA NA chr8-108 134548212 134548789 332 - chr8:134548660-134548788 NA NA NA NA NA chr8-107 134361122 134361738 277 - chr8:134361371-134361381 NA NA NA NA NA chr8-106 133729960 133730171 171 - chr8:133729997-133730148 NA NA NA NA NA chr8-105 133618567 133618927 319 - chr8:133618627-133618905 NA NA NA NA NA chr8-104 133286261 133286644 238 - chr8:133286426-133286519 NA NA NA NA NA chr8-103 132910223 132910441 209 - chr8:132910228-132910428 NA NA NA NA NA chr8-102 132798020 132798225 172 - chr8:132798060-132798166 NA NA NA NA NA chr8-101 132521718 132521987 178 - chr8:132521875-132521962 NA NA NA NA NA chr8-100 131410952 131411233 264 - chr8:131410962-131411209 NA NA NA NA NA chr8-99 131003838 131004189 222 - chr8:131004000-131004093 NA NA NA NA NA chr8-98 130663946 130664440 255 - chr8:130664240-130664311 NA NA NA NA NA chr8-97 129798892 129799280 166 - chr8:129799215-129799260 NA NA NA NA NA chr8-96 128948186 128948401 180 - chr8:128948237-128948382 NA NA NA NA NA chr8-95 125701736 125702139 233 - 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NA chr8-81 118244167 118244800 375 - chr8:118244478-118244595 NA NA NA NA NA chr8-80 117630475 117630989 262 - chr8:117630753-117630763 NA NA NA NA NA chr8-79 117012832 117013244 228 - chr8:117013016-117013060 NA NA NA NA NA chr8-78 115273411 115273945 285 - chr8:115273687-115273831 NA NA NA NA NA chr8-3 11480263 11480745 292 - chr8:11480439-11480525 NA NA NA NA NA chr8-77 114207292 114207668 254 - chr8:114207467-114207607 NA NA NA NA NA chr8-76 112237456 112237804 199 - chr8:112237595-112237635 NA NA NA NA NA chr8-75 108266396 108266623 212 - chr8:108266411-108266608 NA NA NA NA NA chr8-74 107699662 107700159 307 - chr8:107699824-107699969 NA NA NA NA NA chr8-73 107493771 107494059 206 - chr8:107493813-107493957 NA NA NA NA NA chr8-72 107174155 107174518 286 - chr8:107174209-107174418 NA NA NA NA NA chr8-71 107154346 107154689 187 - chr8:107154606-107154637 NA NA NA NA NA chr8-70 106832343 106832711 173 - chr8:106832555-106832689 NA NA NA NA NA chr8-69 105071569 105071861 238 - 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chr10-117 121780947 121781189 181 - chr10:121780948-121781116 NA NA NA NA NA chr10-116 121741429 121741826 227 - chr10:121741651-121741682 NA NA NA NA NA chr10-115 119931321 119931551 209 - chr10:119931340-119931526 NA NA NA NA NA chr10-114 119533518 119533871 221 - chr10:119533638-119533727 NA NA NA NA NA chr10-113 118608859 118609273 262 - chr10:118608956-118609011 NA NA NA NA NA chr10-112 117755615 117755863 169 - chr10:117755713-117755822 NA NA NA NA NA chr10-111 117349784 117350075 191 - chr10:117349790-117349874 NA NA NA NA NA chr10-110 117041478 117041830 248 - chr10:117041602-117041746 NA NA NA NA NA chr10-109 116654762 116655001 194 - chr10:116654789-116654947 NA NA NA NA NA chr10-108 116194476 116194956 212 - chr10:116194853-116194906 NA NA NA NA NA chr10-107 114377608 114378112 229 - chr10:114377910-114377972 NA NA NA NA NA chr10-106 113703402 113703609 199 - chr10:113703402-113703585 NA NA NA NA NA chr10-105 111261652 111262025 233 - chr10:111261668-111261761 NA NA NA NA NA chr10-104 110359377 110359632 228 - chr10:110359457-110359550 NA NA NA NA NA chr10-103 109678964 109679465 394 - chr10:109679285-109679465 NA NA NA NA NA chr10-102 108911962 108912157 177 - chr10:108911981-108912141 NA NA NA NA NA chr10-101 108872965 108873401 297 - chr10:108873160-108873290 NA NA NA NA NA chr10-100 108688498 108688753 197 - chr10:108688569-108688708 NA NA NA NA NA chr10-99 108230633 108231097 308 - chr10:108230810-108230983 NA NA NA NA NA chr10-98 105791101 105791612 268 - chr10:105791317-105791342 NA NA NA NA NA chr10-7 10440188 10440565 245 - chr10:10440365-10440523 NA NA NA NA NA chr10-6 10439177 10439449 181 - chr10:10439342-10439395 NA NA NA NA NA chr10-97 103434057 103434571 209 - chr10:103434162-103434226 NA NA NA NA NA chr10-96 102937532 102938116 282 - chr10:102937900-102937946 NA NA NA NA NA 4059 chr7 25854287 25855321 + 9.83333 NA Intergenic Intergenic -64685 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 3192 chr8 85220125 85221249 + 9.83333 NA promoter-TSS (NM_001293320) promoter-TSS (NM_001293320) -265 NM_001099670 401466 Hs.443072 NM_001099670 ENSG00000176731 RBIS C8orf59 ribosomal biogenesis factor protein-coding 2152.67-2 chr5 141564076 141564835 + 9.83333 NA non-coding (NR_038333, exon 3 of 3) non-coding (NR_038333, exon 3 of 3) 6144 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 2080.67 chr10 59240053 59240990 + 9.83333 NA intron (NM_001143774, intron 4 of 4) MER47A|DNA|TcMar-Tigger 63054 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 2951 chr2 178700411 178701502 + 9.83333 NA intron (NM_001256850, intron 109 of 312) intron (NM_001256850, intron 109 of 312) -75970 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 2393.17 chr12 53746500 53747325 + 9.83333 NA Intergenic Intergenic 4923 NR_104333 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 2572.5 chr4 30269560 30270363 + 9.83333 NA Intergenic Intergenic -450408 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1613.17 chr11 119480976 119481514 + 9.83333 NA intron (NR_034160, intron 3 of 3) L2a|LINE|L2 -56260 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 2882.83 chr8 138686105 138687307 + 9.83333 NA intron (NM_152888, intron 37 of 64) intron (NM_152888, intron 37 of 64) -188976 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 2437.33 chr1 179814603 179815593 + 9.66667 NA 3' UTR (NM_001329712, exon 5 of 5) 3' UTR (NM_001329712, exon 5 of 5) 11174 NR_162130 113219451 NR_162130 MIR12116 - microRNA 12116 ncRNA 3327.33 chr1 39605923 39606687 + 9.66667 NA Intergenic Intergenic -29515 NM_001135653 8761 Hs.169900 NM_003819 ENSG00000090621 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein cytoplasmic 4 protein-coding 1935.17-2 chr9 128117497 128118364 + 9.66667 NA non-coding (NR_033374, exon 1 of 5) non-coding (NR_033374, exon 1 of 5) 804 NR_033374 100289019 Hs.693796 NR_033374 SLC25A25-AS1 - SLC25A25 antisense RNA 1 ncRNA 2543.5-2 chr8 137492156 137493493 + 9.66667 NA Intergenic Intergenic -79236 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1965.83 chr2 102020017 102020817 + 9.66667 NA intron (NR_048564, intron 5 of 8) intron (NR_048564, intron 5 of 8) 21456 NR_048564 7850 Hs.25333 NM_004633 ENSG00000115590 IL1R2 CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB interleukin 1 receptor type 2 protein-coding 2262.17 chr7 28096452 28097240 + 9.66667 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -83611 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 2149.5 chr19 42566689 42567572 + 9.66667 NA intron (NR_073180, intron 2 of 2) intron (NR_073180, intron 2 of 2) 27794 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 3441.67 chr1 46442434 46443354 + 9.66667 NA non-coding (NR_045483, exon 8 of 9) non-coding (NR_045483, exon 8 of 9) 6810 NR_121680 101929651 Hs.638707 NR_121680 ENSG00000224863 LINC01398 - long intergenic non-protein coding RNA 1398 ncRNA 1793 chr20 45436758 45437452 + 9.66667 NA intron (NR_159957, intron 2 of 3) intron (NR_159957, intron 2 of 3) 9683 NR_159957 105372631 Hs.729907 NR_159957 LOC105372631 - uncharacterized LOC105372631 ncRNA 1753.33 chr15 68673863 68674420 + 9.5 NA intron (NM_006091, intron 2 of 11) intron (NM_006091, intron 2 of 11) 32638 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 1967.33 chr15 79993197 79993985 + 9.5 NA Intergenic Intergenic -22395 NM_001114735 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 2283.16 chr8 106856428 106857492 + 9.5 NA Intergenic Intergenic -86716 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 2447.83 chr1 101288062 101289036 + 9.5 NA Intergenic Intergenic -35288 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 3547.33 chr22 27885877 27887161 + 9.5 NA intron (NM_001284278, intron 7 of 11) intron (NM_001284278, intron 7 of 11) 32695 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 2624 chr2 41840401 41841261 + 9.5 NA Intergenic CpG -36724 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 2924.5 chr5 59389880 59390833 + 9.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -33386 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 3174 chr6 133923522 133924381 + 9.5 NA Intergenic Intergenic -28219 NM_001253676 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 5749.67 chr7 28921339 28923782 + 9.5 NA Intergenic Intergenic 35770 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 2591.33 chr9 27332753 27333771 + 9.5 NA intron (NM_024761, intron 3 of 3) intron (NM_024761, intron 3 of 3) -36112 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 1986.5 chr1 78130553 78130974 + 9.5 NA intron (NM_001304725, intron 5 of 5) MIRb|SINE|MIR 84797 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 2650.83 chr8 123765920 123766655 + 9.5 NA Intergenic Intergenic -2152 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 1274.33-3 chr5 88141354 88141710 + 9.5 NA Intergenic CpG 127313 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 1788.5 chr10 88553181 88553707 + 9.5 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 29874 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 3334 chr18 961270 962481 + 9.5 NA Intergenic Intergenic -33882 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 2645.17 chr7 93227996 93228688 + 9.5 NA intron (NM_001346642, intron 1 of 9) intron (NM_001346642, intron 1 of 9) -1873 NM_001039372 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 2299.33 chr8 138698770 138699493 + 9.33333 NA intron (NM_152888, intron 32 of 64) intron (NM_152888, intron 32 of 64) -201401 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 2777.33 chr12 10153043 10153705 + 9.33333 NA Intergenic L1PA16|LINE|L1 -17225 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 2090.5 chr8 133575296 133575782 + 9.33333 NA Intergenic Intergenic -3652 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 3506 chr10 70221256 70222115 + 9.33333 NA intron (NM_021129, intron 2 of 10) intron (NM_021129, intron 2 of 10) 11744 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 3500.5 chr2 75064773 75065646 + 9.33333 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) -25603 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 2533.83 chr7 108497097 108497827 + 9.33333 NA intron (NM_001256010, intron 5 of 9) intron (NM_001256010, intron 5 of 9) 28673 NM_001256007 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 2570.83 chr12 442019 442963 + 9.33333 NA 3' UTR (NM_001130147, exon 12 of 12) 3' UTR (NM_001130147, exon 12 of 12) -17448 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 3552.67 chr5 118987823 118988775 + 9.33333 NA promoter-TSS (NM_001308081) promoter-TSS (NM_001308081) -79 NM_001308081 285605 Hs.655891 NM_173666 ENSG00000169570 DTWD2 - DTW domain containing 2 protein-coding 3845.83 chr5 169979786 169981591 + 9.33333 NA promoter-TSS (NM_001346304) promoter-TSS (NM_001346304) -193 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 2584.83 chr8 129825793 129826860 + 9.33333 NA Intergenic Intergenic -39702 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 2492.67 chr12 26651399 26652383 + 9.33333 NA intron (NM_002223, intron 21 of 56) L1MC4|LINE|L1 181303 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 1973.17 chr12 54214732 54215228 + 9.33333 NA Intergenic Intergenic 16496 NR_039851 100616400 NR_039851 ENSG00000283803 MIR3198-2 mir-3198-2 microRNA 3198-2 ncRNA 2072.17-2 chr6 41367621 41368324 + 9.33333 NA Intergenic Intergenic 32364 NM_004828 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 2442-2 chr5 77492277 77492845 + 9.33333 NA promoter-TSS (NM_018268) promoter-TSS (NM_018268) -245 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 4260.17 chr5 52914912 52916105 + 9.33333 NA exon (NM_181501, exon 15 of 29) exon (NM_181501, exon 15 of 29) -73844 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 2486.5 chr17 64419732 64420729 + 9.33333 NA Intergenic Intergenic -28885 NM_001291316 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 2583.17 chr11 16605755 16606690 + 9.33333 NA intron (NM_001367872, intron 3 of 16) (TTTCTTT)n|Simple_repeat|Simple_repeat -129834 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 3019.17 chr18 616010 616967 + 9.33333 NA promoter-TSS (NM_001318522) promoter-TSS (NM_001318522) -184 NM_001318522 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 3051.5 chr7 95690080 95691391 + 9.33333 NA Intergenic Intergenic -81771 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 2714 chr3 138594345 138595056 + 9.16667 NA promoter-TSS (NM_001288966) promoter-TSS (NM_001288966) -317 NM_001288966 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 1748.33 chr14 87896340 87897147 + 9.16667 NA Intergenic Intergenic 96439 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 2386.33 chr2 17719348 17720194 + 9.16667 NA intron (NM_024624, intron 10 of 26) intron (NM_024624, intron 10 of 26) 34039 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 1728.67-2 chr8 75372391 75373093 + 9.16667 NA Intergenic Intergenic -34907 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 4300 chr9 27276165 27277042 + 9.16667 NA intron (NR_026679, intron 6 of 16) intron (NR_026679, intron 6 of 16) 6190 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 2205.17 chr10 29392348 29393182 + 9.16667 NA Intergenic L1MC4|LINE|L1 -16769 NR_110924 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 1983.83 chr1 173419826 173420937 + 9.16667 NA intron (NR_125960, intron 1 of 1) LTR78|LTR|ERV1 40981 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 3513.33 chr4 85796399 85797541 + 9.16667 NA intron (NM_001346093, intron 1 of 6) LTR41|LTR|ERVL 18172 NM_001042669 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 1114.5-2 chr3 189147942 189148445 + 9.16667 NA Intergenic Intergenic -23778 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 3735 chr11 124836741 124837874 + 9.16667 NA Intergenic Intergenic -28125 NM_022370 64221 Hs.435621 NM_022370 ENSG00000154134 ROBO3 HGPPS|HGPPS1|HGPS|RBIG1|RIG1 roundabout guidance receptor 3 protein-coding 2489.17-2 chr2 88880065 88880974 + 9.16667 NA Intergenic Intergenic 68149 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 2346.83 chr8 119862792 119863410 + 9.16667 NA Intergenic Intergenic -7207 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 3499.66 chr6 57316400 57317633 + 9.16667 NA promoter-TSS (NM_001282487) promoter-TSS (NM_001282487) -614 NM_001282487 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 3171.17 chr14 59964269 59965509 + 9.16667 NA intron (NR_075071, intron 10 of 32) intron (NR_075071, intron 10 of 32) 45176 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 2341.33 chr12 85920207 85921018 + 9.16667 NA Intergenic Intergenic 46317 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 4193 chr7 26685991 26687191 + 9.16667 NA intron (NM_003930, intron 10 of 12) intron (NM_003930, intron 10 of 12) 48720 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 1364.67-2 chr7 94435882 94436451 + 9.16667 NA Intergenic Intergenic 41605 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 3263.67 chr20 31313186 31314022 + 9.16667 NA Intergenic Intergenic -5019 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 3023.17 chr11 72433918 72434903 + 9.16667 NA exon (NM_001258392, exon 1 of 16) exon (NM_001258392, exon 1 of 16) 121 NM_001258393 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 2133.17-2 chr22 25056962 25057956 + 9.16667 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 29485 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 2589.17 chr2 213250708 213251989 + 9.16667 NA Intergenic Intergenic 32861 NR_161186 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 1746.67 chr9 130866337 130867098 + 9.16667 NA intron (NM_007313, intron 4 of 10) intron (NM_007313, intron 4 of 10) 30095 NM_198180 347148 Hs.660704 NM_198180 ENSG00000188710 QRFP 26RFa|P518 pyroglutamylated RFamide peptide protein-coding 3221.17 chr7 12490048 12491083 + 9.16667 NA Intergenic Intergenic -5864 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 1920.5 chr1 26597310 26598320 + 9.16667 NA Intergenic Intergenic 43273 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 2564.5 chr17 64025724 64026560 + 9.16667 NA Intergenic Intergenic -5508 NM_001099787 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 1986.17 chr11 60169379 60169982 + 9.16667 NA Intergenic Intergenic 13651 NM_152851 64231 Hs.523702 NM_022349 ENSG00000110077 MS4A6A 4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090 membrane spanning 4-domains A6A protein-coding 1407.67 chr14 50104615 50105409 + 9.16667 NA promoter-TSS (NR_131171) promoter-TSS (NR_131171) 31 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 2422.5 chr12 55738376 55739164 + 9.16667 NA Intergenic Intergenic -4352 NM_005811 10220 Hs.600883 NM_005811 ENSG00000135414 GDF11 BMP-11|BMP11 growth differentiation factor 11 protein-coding 2377.5 chr19 2950705 2951274 + 9 NA Intergenic Intergenic -6018 NM_021217 58492 Hs.38004 NM_021217 ENSG00000175691 ZNF77 pT1 zinc finger protein 77 protein-coding 3294 chr1 222454879 222455945 + 9 NA Intergenic Intergenic 92692 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 3988.33 chr22 35230395 35232294 + 9 NA promoter-TSS (NR_126356) promoter-TSS (NR_126356) -288 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 1527.83-2 chr6 73739040 73739521 + 9 NA intron (NM_001159588, intron 4 of 31) intron (NM_001159588, intron 4 of 31) 43077 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 2263 chr8 138165139 138166101 + 9 NA intron (NM_015912, intron 12 of 19) intron (NM_015912, intron 12 of 19) -82075 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 3532.83 chr8 120084621 120085503 + 9 NA Intergenic Intergenic -40040 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 1748.5 chr12 54324402 54325091 + 9 NA promoter-TSS (NM_001271734) promoter-TSS (NM_001271734) -385 NM_001271735 22818 Hs.505652 NM_016057 ENSG00000111481 COPZ1 CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP coatomer protein complex subunit zeta 1 protein-coding 1401.17 chr20 1503386 1504504 + 9 NA Intergenic Intergenic -12525 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 2543.5 chr12 4857456 4858200 + 9 NA Intergenic Intergenic 48652 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 1845.33 chr19 44845664 44845981 + 9 NA promoter-TSS (NM_002856) promoter-TSS (NM_002856) -475 NM_001042724 5819 Hs.655455 NM_002856 ENSG00000130202 NECTIN2 CD112|HVEB|PRR2|PVRL2|PVRR2 nectin cell adhesion molecule 2 protein-coding 2615 chr17 48602007 48603143 + 9 NA TTS (NR_033202) TTS (NR_033202) 2411 NM_018952 3216 Hs.98428 NM_018952 ENSG00000108511 HOXB6 HOX2|HOX2B|HU-2|Hox-2.2 homeobox B6 protein-coding 1314 chr1 41123229 41123499 + 9 NA intron (NM_001172218, intron 7 of 15) intron (NM_001172218, intron 7 of 15) 38068 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 2831.33 chr18 74196054 74196770 + 9 NA Intergenic Intergenic 47889 NM_014177 29090 Hs.532835 NM_014177 ENSG00000075336 TIMM21 C18orf55|HSPC154|TIM21 translocase of inner mitochondrial membrane 21 protein-coding 1967.17 chr10 84374245 84375140 + 9 NA TTS (NM_001284241) TTS (NM_001284241) 46103 NM_001284241 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 2053.83 chr2 157302350 157303026 + 9 NA intron (NM_001329868, intron 8 of 10) intron (NM_001329868, intron 8 of 10) 23136 NM_020711 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 1730 chr7 37495403 37496484 + 9 NA Intergenic Intergenic -46617 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 2215.5 chr14 59126895 59127928 + 9 NA Intergenic Intergenic -61256 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 2192.67 chr17 58710942 58711356 + 9 NA intron (NM_058216, intron 5 of 8) intron (NM_058216, intron 5 of 8) 18547 NM_058216 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 3197.83 chr20 53578096 53579455 + 8.83333 NA intron (NM_006526, intron 1 of 4) intron (NM_006526, intron 1 of 4) 4322 NM_006526 7764 Hs.155040 NM_006526 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 1697-2 chr6 42532002 42532499 + 8.83333 NA Intergenic Intergenic -31772 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 2441.83 chr7 37181774 37182608 + 8.83333 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 171477 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 2280.17 chr2 177763526 177764460 + 8.83333 NA intron (NM_001077197, intron 11 of 20) MER91A|DNA|hAT-Tip100 90671 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 1970.5 chr10 106175785 106176508 + 8.83333 NA intron (NR_134330, intron 1 of 4) intron (NR_134330, intron 1 of 4) 35981 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 4746.5 chr10 63866150 63867060 + 8.83333 NA Intergenic Intergenic -344715 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 1734.5 chr16 2919559 2920273 + 8.83333 NA intron (NM_020912, intron 2 of 8) intron (NM_020912, intron 2 of 8) 7937 NM_032296 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 2589.5 chr3 72938489 72939474 + 8.83333 NA intron (NM_001080393, intron 3 of 6) intron (NM_001080393, intron 3 of 6) 50935 NR_138564 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 2204 chr7 37198761 37199615 + 8.83333 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 154480 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 2122 chr2 60581939 60582735 + 8.83333 NA Intergenic Intergenic -28683 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 3092.67 chr19 47515091 47515994 + 8.83333 NA promoter-TSS (NR_038456) promoter-TSS (NR_038456) -479 NR_038457 8775 Hs.126938 NM_003827 ENSG00000105402 NAPA SNAPA NSF attachment protein alpha protein-coding 1770.33 chr8 118743373 118743938 + 8.83333 NA Intergenic Intergenic -121692 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 2723.33 chr12 39103730 39104471 + 8.83333 NA Intergenic Intergenic -198509 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 3840 chr12 9748440 9749923 + 8.83333 NA Intergenic AluSz|SINE|Alu 11720 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 2755.5 chr1 153351949 153352915 + 8.83333 NA Intergenic Charlie1a|DNA|hAT-Charlie -3591 NM_020393 57115 Hs.58356 NM_020393 ENSG00000163218 PGLYRP4 PGLYRPIbeta|PGRP-Ibeta|PGRPIB|SBBI67 peptidoglycan recognition protein 4 protein-coding 2952.17 chr2 199979767 199980449 + 8.83333 NA Intergenic Intergenic -24617 NM_001039693 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 2328.5 chr11 6683195 6684189 + 8.83333 NA promoter-TSS (NM_022061) promoter-TSS (NM_022061) -352 NM_022061 63875 Hs.523456 NM_022061 ENSG00000158042 MRPL17 L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26 mitochondrial ribosomal protein L17 protein-coding 3694.84 chr22 26330584 26332070 + 8.83333 NA intron (NM_001184776, intron 9 of 14) L1ME4b|LINE|L1 -97933 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 1872.17 chr3 45037421 45038339 + 8.83333 NA Intergenic Intergenic 7737 NM_001308394 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 2667.17 chr2 170928298 170929259 + 8.83333 NA promoter-TSS (NM_015530) promoter-TSS (NM_015530) 301 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 2650.5 chr8 135452209 135453671 + 8.83333 NA Intergenic MIR3|SINE|MIR -4516 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 2419.83 chr2 117813716 117814674 + 8.66667 NA promoter-TSS (NM_006773) promoter-TSS (NM_006773) -496 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 4367.17 chr2 187580544 187582197 + 8.66667 NA Intergenic Intergenic -26865 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 2547.83 chr17 80575109 80575978 + 8.66667 NA intron (NM_020761, intron 1 of 33) MER91C|DNA|hAT-Tip100 30705 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 1782.67 chr11 27498991 27499727 + 8.66667 NA exon (NM_018362, exon 4 of 5) exon (NM_018362, exon 4 of 5) 7410 NM_018362 55327 Hs.91393 NM_018362 ENSG00000148943 LIN7C LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3 lin-7 homolog C, crumbs cell polarity complex component protein-coding 2569.5 chr2 48111102 48111721 + 8.66667 NA Intergenic Intergenic -203271 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 2487.33 chr2 121070957 121071642 + 8.66667 NA Intergenic Intergenic 213903 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 1265-2 chr19 44770599 44771228 + 8.66667 NA Intergenic L1PA16|LINE|L1 -6956 NM_001130852 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 1415.83 chr8 144326669 144327260 + 8.66667 NA promoter-TSS (NM_012079) promoter-TSS (NM_012079) -112 NM_012079 8694 Hs.521954 NM_012079 ENSG00000185000 DGAT1 ARAT|ARGP1|DGAT|DIAR7 diacylglycerol O-acyltransferase 1 protein-coding 2804.83 chr8 110829935 110831075 + 8.66667 NA Intergenic HUERS-P3-int|LTR|ERV1 196928 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 3792.17 chr5 39577778 39579297 + 8.66667 NA Intergenic MIR|SINE|MIR 58106 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 1476.5 chr20 57594314 57594989 + 8.66667 NA Intergenic Intergenic 25775 NM_001160417 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 2283.33 chr17 49035480 49036445 + 8.66667 NA intron (NM_001160423, intron 5 of 12) CpG 38577 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 2862.5 chr12 21680336 21681190 + 8.66667 NA Intergenic Intergenic -22908 NM_001315537 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 3071.33 chr11 81643477 81644826 + 8.66667 NA Intergenic Intergenic 246685 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 2330.67 chr14 20609028 20610101 + 8.66667 NA Intergenic Intergenic -18741 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 2572.33 chr17 60036761 60038060 + 8.66667 NA Intergenic L1MD2|LINE|L1 5695 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 3039 chr14 25150651 25151658 + 8.66667 NA Intergenic Intergenic -100857 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 1842.17 chr9 130707256 130707716 + 8.66667 NA Intergenic Intergenic -6395 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 2473.5 chr5 54517124 54517686 + 8.66667 NA promoter-TSS (NM_052870) promoter-TSS (NM_052870) -354 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 1987.33 chr8 133453457 133454141 + 8.66667 NA Intergenic Intergenic 118088 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1267.5-2 chr15 73636485 73636764 + 8.66667 NA Intergenic Intergenic -3235 NM_001161364 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 1913.5 chr2 43612072 43612710 + 8.66667 NA Intergenic Intergenic -16345 NM_022065 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 2221.5 chr11 100575570 100576665 + 8.66667 NA Intergenic Intergenic -111171 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 2100.33 chr2 36784995 36785825 + 8.66667 NA intron (NM_001177969, intron 10 of 14) intron (NM_001177969, intron 10 of 14) 88703 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 1486.5-2 chr21 31098333 31098944 + 8.66667 NA Intergenic MIR3|SINE|MIR -60162 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 2136.5 chr7 138002153 138002707 + 8.66667 NA promoter-TSS (NM_194071) promoter-TSS (NM_194071) -344 NM_001253775 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 5577.34 chr5 160438097 160440039 + 8.66667 NA Intergenic Intergenic 17158 NM_001282383 9232 Hs.350966 NM_004219 ENSG00000164611 PTTG1 EAP1|HPTTG|PTTG|TUTR1 PTTG1 regulator of sister chromatid separation, securin protein-coding 1874.67 chr1 43226987 43227754 + 8.66667 NA intron (NM_001195831, intron 18 of 23) intron (NM_001195831, intron 18 of 23) -42613 NM_001320244 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 2296.67 chr7 80698432 80699435 + 8.66667 NA Intergenic Intergenic 52280 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 2342.83 chr7 111735377 111736313 + 8.5 NA intron (NM_001363540, intron 50 of 52) intron (NM_001363540, intron 50 of 52) -72660 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 2677.5 chr10 96369961 96371317 + 8.5 NA intron (NM_012465, intron 19 of 20) intron (NM_012465, intron 19 of 20) -11274 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 2668.83 chr17 59440715 59441776 + 8.5 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 75162 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 2006.17 chr2 67846331 67847345 + 8.5 NA Intergenic Intergenic -21276 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 1924.33 chr5 59800213 59800764 + 8.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -31640 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1589.5-2 chr21 31086433 31087270 + 8.5 NA Intergenic Intergenic -48375 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 4172.83 chr8 136059721 136060768 + 8.5 NA Intergenic L1PA16|LINE|L1 -470554 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 4154 chr11 58523660 58525066 + 8.5 NA Intergenic Intergenic -16258 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 2453.17 chr3 109081793 109082588 + 8.5 NA intron (NM_014429, intron 8 of 27) L1MA4|LINE|L1 -19266 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 2008 chr12 26029125 26029962 + 8.5 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -23021 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 1572.83 chr1 58546712 58547219 + 8.5 NA promoter-TSS (NM_145243) promoter-TSS (NM_145243) -239 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 2185.33 chr2 70976982 70977601 + 8.5 NA Intergenic LTR13|LTR|ERVK -1154 NM_001369683 79998 Hs.512744 NM_024933 ENSG00000144031 ANKRD53 - ankyrin repeat domain 53 protein-coding 1891.83 chr11 41498369 41498943 + 8.5 NA Intergenic Intergenic -39004 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1829.5 chr8 130749214 130750310 + 8.5 NA Intergenic Intergenic 291147 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 2506.5 chr10 57656596 57657931 + 8.5 NA Intergenic Intergenic -352704 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 1603.67 chr19 46265156 46265875 + 8.5 NA Intergenic AluJb|SINE|Alu -31527 NM_152795 64344 Hs.420830 NM_022462 ENSG00000124440 HIF3A HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17 hypoxia inducible factor 3 subunit alpha protein-coding 2591.83 chr14 76050362 76051495 + 8.5 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 65165 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 2012.33-2 chr16 73956480 73957410 + 8.5 NA Intergenic Intergenic 258576 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 1362.33-2 chr5 43064823 43065197 + 8.5 NA TTS (NR_034127) TTS (NR_034127) 1961 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 2211.33 chr1 180862880 180863923 + 8.5 NA intron (NM_004736, intron 11 of 14) intron (NM_004736, intron 11 of 14) -49496 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 2778.67 chr9 32378639 32379730 + 8.5 NA Intergenic Intergenic -5419 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 1991.5 chr1 203504296 203505562 + 8.5 NA intron (NM_014359, intron 7 of 7) intron (NM_014359, intron 7 of 7) 10776 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 2908.33 chr8 78393142 78394067 + 8.5 NA Intergenic Intergenic -122736 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 2664.67 chr19 10716820 10718078 + 8.5 NA promoter-TSS (NM_004945) promoter-TSS (NM_004945) -604 NM_001005361 1785 Hs.211463 NM_004945 ENSG00000079805 DNM2 CMT2M|CMTDI1|CMTDIB|DI-CMTB|DYN2|DYNII|LCCS5 dynamin 2 protein-coding 2129.83 chr15 83438607 83439144 + 8.5 NA Intergenic Intergenic -8353 NM_001324182 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 3824.33 chr15 89358452 89359324 + 8.5 NA Intergenic CpG -2691 NR_133001 254559 Hs.136313 NR_015411 ENSG00000255571 MIR9-3HG LINC00925 MIR9-3 host gene ncRNA 2215.67 chr3 67109487 67110294 + 8.5 NA Intergenic Intergenic 111583 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 1425.83 chr11 19076149 19077436 + 8.5 NA Intergenic L2a|LINE|L2 -16075 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 944.167-2 chr16 67481157 67481383 + 8.5 NA promoter-TSS (NM_004691) promoter-TSS (NM_004691) -113 NM_004691 9114 Hs.106876 NM_004691 ENSG00000159720 ATP6V0D1 ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD ATPase H+ transporting V0 subunit d1 protein-coding 2515.17 chr8 133449422 133450165 + 8.5 NA Intergenic Intergenic 122094 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1162.67-2 chr2 216777760 216778275 + 8.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR 82047 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 2676.33 chr1 155167484 155168476 + 8.5 NA Intergenic Intergenic 5348 NM_173852 200185 Hs.516671 NM_173852 ENSG00000163463 KRTCAP2 KCP2 keratinocyte associated protein 2 protein-coding 2563.83 chr12 14716688 14717469 + 8.33333 NA Intergenic L2a|LINE|L2 -20479 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 2416.83 chr1 92858464 92859455 + 8.33333 NA intron (NM_001252269, intron 1 of 3) intron (NM_001252269, intron 1 of 3) 18191 NM_001252271 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 4446.17 chr1 114978228 114980082 + 8.33333 NA intron (NM_001282542, intron 27 of 30) intron (NM_001282542, intron 27 of 30) -50669 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 6149.17 chr8 78506745 78508982 + 8.33333 NA Intergenic Intergenic -8477 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 1738.33 chrX 66728573 66729400 + 8.33333 NA Intergenic Intergenic -89688 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 1891.5 chr10 90911300 90912039 + 8.33333 NA TTS (NM_014391) TTS (NM_014391) 9606 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 2591 chr9 77167135 77167760 + 8.33333 NA Intergenic Intergenic -9998 NM_015186 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 1642.5 chr9 75866401 75866715 + 8.33333 NA Intergenic MIR3|SINE|MIR -24086 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 1777 chr8 85451285 85452002 + 8.33333 NA intron (NR_121630, intron 2 of 2) intron (NR_121630, intron 2 of 2) 11411 NR_121632 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 1753.17 chr1 110619257 110619873 + 8.33333 NA intron (NM_001204269, intron 1 of 4) intron (NM_001204269, intron 1 of 4) 11875 NM_001204269 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 3228 chr14 80986991 80988137 + 8.33333 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 31943 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 996.833 chr2 30862176 30862608 + 8.33333 NA Intergenic AluJr|SINE|Alu -54946 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 2532 chr17 48335620 48336431 + 8.33333 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 41678 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 2343.67 chr5 149990693 149991764 + 8.33333 NA Intergenic Intergenic 9426 NM_030953 81789 Hs.169333 NM_030953 ENSG00000164296 TIGD6 - tigger transposable element derived 6 protein-coding 1786.5 chr17 43483477 43484385 + 8.33333 NA promoter-TSS (NM_001302623) promoter-TSS (NM_001302623) -44 NM_001302623 1659 Hs.463105 NM_004941 ENSG00000067596 DHX8 DDX8|Dhr2|HRH1|PRP22|PRPF22 DEAH-box helicase 8 protein-coding 1851.17 chr1 54944879 54945510 + 8.33333 NA Intergenic Intergenic -35434 NM_182532 199964 Hs.663950 NM_182532 ENSG00000143001 TMEM61 - transmembrane protein 61 protein-coding 2182.17 chr6 16206443 16207482 + 8.33333 NA Intergenic Intergenic -31625 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 1507.83 chr18 77000202 77000637 + 8.33333 NA intron (NM_001025090, intron 1 of 5) intron (NM_001025090, intron 1 of 5) 16636 NM_001025081 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 2538.67 chr1 158998519 158999718 + 8.33333 NA promoter-TSS (NM_001364867) promoter-TSS (NM_001364867) -858 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 1451.5 chr10 116490076 116490515 + 8.33333 NA Intergenic Intergenic -55636 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 2927.5 chr20 56399725 56400641 + 8.33333 NA intron (NM_001033521, intron 5 of 5) intron (NM_001033521, intron 5 of 5) 7538 NM_001324 1477 Hs.172865 NM_001324 ENSG00000101138 CSTF1 CstF-50|CstFp50 cleavage stimulation factor subunit 1 protein-coding 2579.5 chr8 137334551 137335463 + 8.33333 NA Intergenic Intergenic 78581 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1927.67 chr11 65989074 65989667 + 8.33333 NA Intergenic Intergenic -12709 NM_001143985 8815 Hs.433759 NM_003860 ENSG00000175334 BANF1 BAF|BCRP1|D14S1460|NGPS barrier to autointegration factor 1 protein-coding 2024.17 chr17 27601412 27602317 + 8.33333 NA intron (NM_001367810, intron 10 of 18) intron (NM_001367810, intron 10 of 18) -29324 NM_001330163 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 1837.83 chr1 27097171 27097841 + 8.33333 NA Intergenic Intergenic 57619 NM_003047 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 1986.83 chr2 84927007 84927669 + 8.33333 NA Intergenic Intergenic 21682 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 1234.67 chr1 158124557 158125328 + 8.33333 NA Intergenic Intergenic 15698 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 4562.83 chr3 32177175 32178450 + 8.33333 NA Intergenic Intergenic -60867 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 2168.67 chr8 86356488 86357227 + 8.33333 NA intron (NM_007013, intron 1 of 24) intron (NM_007013, intron 1 of 24) 14310 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 1912.33 chr5 76774432 76775304 + 8.33333 NA Intergenic Intergenic -44162 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 2229.33 chr5 148443685 148444475 + 8.33333 NA Intergenic Intergenic 60122 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 1109.33 chr2 42827495 42828214 + 8.33333 NA Intergenic CpG -35271 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 2659.67 chr2 64873206 64874113 + 8.33333 NA Intergenic Intergenic -10028 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 2057.83 chr14 62126807 62127471 + 8.33333 NA intron (NR_015358, intron 2 of 3) intron (NR_015358, intron 2 of 3) 9782 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 2014.67 chr6 73854599 73855235 + 8.33333 NA Intergenic Intergenic 158714 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 1497.83 chr22 22958860 22959861 + 8.33333 NA Intergenic Intergenic 71544 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 2359 chr6 41072336 41073711 + 8.16667 NA promoter-TSS (NM_001329692) promoter-TSS (NM_001329692) 49 NM_021705 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 1898.67 chr10 95363003 95363759 + 8.16667 NA intron (NM_001034955, intron 20 of 30) intron (NM_001034955, intron 20 of 30) -72378 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 2367.5 chr10 70558951 70559568 + 8.16667 NA intron (NM_014431, intron 18 of 19) L2a|LINE|L2 43482 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 1907.67 chr22 34414523 34415298 + 8.16667 NA Intergenic Intergenic -492022 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 1715.17 chr8 81641162 81641880 + 8.16667 NA Intergenic Charlie14a|DNA|hAT-Charlie -10244 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 1320.67-2 chr5 149564718 149565354 + 8.16667 NA Intergenic Intergenic -13597 NM_001025105 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 2100 chr1 160007445 160008218 + 8.16667 NA Intergenic Intergenic 24159 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 1847.33 chr5 144183440 144183963 + 8.16667 NA intron (NM_020768, intron 2 of 3) L2a|LINE|L2 12828 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 2205.83 chr10 45008427 45009403 + 8.16667 NA Intergenic Tigger4b|DNA|TcMar-Tigger 7992 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 2787 chr2 101251909 101252808 + 8.16667 NA promoter-TSS (NM_017546) promoter-TSS (NM_017546) -528 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 1585.83 chr11 112175030 112175690 + 8.16667 NA promoter-TSS (NM_001256398) promoter-TSS (NM_001256398) -152 NM_031938 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 2667.83 chr21 17386784 17387696 + 8.16667 NA Intergenic Intergenic -51650 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 2886.83 chr1 51189057 51190023 + 8.16667 NA Intergenic Intergenic 45556 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 2277.83 chr17 42067216 42067778 + 8.16667 NA Intergenic Intergenic -16896 NM_001358661 110806298 Hs.127116 NM_001358661 ENSG00000267221 C17orf113 - chromosome 17 open reading frame 113 protein-coding 1633.67 chr12 1652671 1653666 + 8.16667 NA Intergenic AluSz|SINE|Alu 7212 NR_037422 100500816 NR_037422 ENSG00000266043 MIR3649 - microRNA 3649 ncRNA 2163.17 chr15 68875762 68876517 + 8.16667 NA Intergenic AluSq2|SINE|Alu -54361 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 2124.17 chr11 102007817 102008465 + 8.16667 NA Intergenic Charlie9|DNA|hAT-Charlie -39296 NM_032930 85016 Hs.98328 NM_032930 ENSG00000137691 CFAP300 C11orf70|CILD38 cilia and flagella associated protein 300 protein-coding 1680.33 chr15 50885881 50886782 + 8.16667 NA Intergenic Intergenic -22352 NM_007347 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 subunit epsilon 1 protein-coding 2499.67 chr2 44981028 44982421 + 8.16667 NA Intergenic Intergenic 27728 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 2257.17 chr14 37246161 37247078 + 8.16667 NA intron (NM_138731, intron 2 of 13) intron (NM_138731, intron 2 of 13) 48682 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 2434.17 chr2 161063483 161064711 + 8.16667 NA Intergenic MADE2|DNA|TcMar-Mariner -72858 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 1260.33-2 chr1 99728818 99729559 + 8.16667 NA intron (NM_001013660, intron 8 of 16) intron (NM_001013660, intron 8 of 16) -16235 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 1807 chr9 17531421 17532230 + 8.16667 NA Intergenic Intergenic -47241 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 3041.5 chr7 38932379 38933709 + 8.16667 NA Intergenic Intergenic -23844 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 3277.33 chr16 80526281 80527756 + 8.16667 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -13716 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 1889 chr17 58517939 58519137 + 8.16667 NA promoter-TSS (NM_004687) promoter-TSS (NM_004687) -658 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 1661.33 chr7 39580086 39580771 + 8.16667 NA intron (NM_001282446, intron 2 of 2) intron (NM_001282446, intron 2 of 2) 14024 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 1534.83 chr3 194594512 194595120 + 8.16667 NA intron (NM_138399, intron 9 of 10) intron (NM_138399, intron 9 of 10) 10548 NR_047575 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 2302.17 chr10 101059325 101060536 + 8.16667 NA Intergenic Intergenic -1312 NM_001319303 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 2911.83 chr19 45438883 45440157 + 8.16667 NA intron (NM_001369412, intron 1 of 9) FLAM_C|SINE|Alu 2866 NR_106736 102464836 NR_106736 ENSG00000275726 MIR6088 hsa-mir-6088 microRNA 6088 ncRNA 1974.83-2 chr6 133972831 133973942 + 8.16667 NA intron (NM_004865, intron 1 of 6) intron (NM_004865, intron 1 of 6) 20162 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 2070 chr7 134432396 134432880 + 8.16667 NA Intergenic MER1A|DNA|hAT-Charlie 26462 NM_001628 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 2424 chr1 150979377 150980248 + 8.16667 NA Intergenic Intergenic -2480 NM_003568 8416 Hs.3346 NM_003568 ENSG00000143412 ANXA9 ANX31 annexin A9 protein-coding 1892.83 chr14 23320769 23321402 + 8.16667 NA promoter-TSS (NM_001360551) promoter-TSS (NM_001360551) -372 NM_001360551 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 3072.17 chr10 28381690 28382624 + 8.16667 NA Intergenic Intergenic -79093 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 1624.83-2 chr10 93288802 93289616 + 8.16667 NA Intergenic Intergenic 193125 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 949.667-2 chr20 46758073 46758344 + 8.16667 NA Intergenic Intergenic 48559 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 1883.67 chr9 37415054 37415819 + 8.16667 NA Intergenic Intergenic -7260 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 2127.17 chr10 34638351 34639060 + 8.16667 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 176591 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 2564.16 chr2 88873479 88874670 + 8 NA Intergenic L1MC5a|LINE|L1 61704 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 1693.5 chr1 161225525 161226082 + 8 NA promoter-TSS (NM_001286373) promoter-TSS (NM_001286373) -136 NM_001286373 84134 Hs.321653 NM_032174 ENSG00000158882 TOMM40L TOMM40B translocase of outer mitochondrial membrane 40 like protein-coding 986.667-2 chr19 49680728 49681223 + 8 NA intron (NM_198318, intron 2 of 9) intron (NM_198318, intron 2 of 9) -1142 NR_049811 100847074 NR_049811 ENSG00000274306 MIR5088 mir-5088 microRNA 5088 ncRNA 2054.83 chr3 10738622 10739496 + 8 NA Intergenic Intergenic 25150 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 2251.67 chr1 239976201 239977376 + 8 NA Intergenic Intergenic -30736 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 2489.17 chr15 85853459 85855024 + 8 NA Intergenic AluY|SINE|Alu 28606 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 1148.17-2 chr11 107799227 107799665 + 8 NA intron (NM_017515, intron 7 of 7) intron (NM_017515, intron 7 of 7) 59341 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 2334 chr2 64917030 64918137 + 8 NA intron (NR_036586, intron 1 of 2) MIRb|SINE|MIR 14864 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 3732.5 chr11 57248946 57250877 + 8 NA Intergenic Intergenic -12458 NM_005161 187 Hs.438311 NM_005161 ENSG00000134817 APLNR AGTRL1|APJ|APJR|HG11 apelin receptor protein-coding 2180.83 chr2 213246604 213247474 + 8 NA Intergenic Intergenic 37170 NR_161186 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 2375.17 chr5 23812231 23813249 + 8 NA Intergenic L2|LINE|L2 -138608 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 2497.67 chr13 80342618 80343284 + 8 NA Intergenic CpG -1825 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 2598.5 chr8 104787266 104788380 + 8 NA Intergenic Intergenic -198799 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 1269.83-2 chr10 5873233 5873721 + 8 NA intron (NM_019046, intron 7 of 7) intron (NM_019046, intron 7 of 7) -16095 NM_001258452 84893 Hs.498543 NM_032807 ENSG00000134452 FBH1 FBXO18|Fbx18|hFBH1 F-box DNA helicase 1 protein-coding 3046.5 chr22 24802802 24803617 + 8 NA Intergenic Intergenic -3002 NM_001098498 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 2028.67 chr14 66495412 66495984 + 8 NA intron (NR_024338, intron 8 of 10) intron (NR_024338, intron 8 of 10) 9327 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 1782.33 chr11 60775300 60775836 + 8 NA intron (NM_152717, intron 5 of 5) intron (NM_152717, intron 5 of 5) -9765 NM_206893 341116 Hs.591956 NM_206893 ENSG00000172689 MS4A10 CD20L7|MS4A9 membrane spanning 4-domains A10 protein-coding 1427.33 chr20 45362758 45363480 + 8 NA promoter-TSS (NM_033542) promoter-TSS (NM_033542) -37 NM_033542 90196 Hs.655055 NM_033542 ENSG00000204070 SYS1 C20orf169|dJ453C12.4|dJ453C12.4.1 SYS1 golgi trafficking protein protein-coding 1860 chr8 122673212 122673935 + 8 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 20533 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 2273.67 chr3 152524720 152525309 + 8 NA Intergenic Intergenic -184024 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 1827 chr18 839114 840026 + 8 NA Intergenic Intergenic -27328 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 2066.17 chr15 41230445 41231207 + 8 NA promoter-TSS (NM_007236) promoter-TSS (NM_007236) -69 NM_001286441 161829 Hs.307999 NM_152596 ENSG00000178997 EXD1 EXDL1 exonuclease 3'-5' domain containing 1 protein-coding 1539 chr17 30095558 30096254 + 8 NA intron (NM_198529, intron 22 of 22) intron (NM_198529, intron 22 of 22) -20901 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 1716.5 chr1 206912486 206913095 + 8 NA intron (NM_005449, intron 3 of 7) intron (NM_005449, intron 3 of 7) 9151 NM_001193338 9214 Hs.58831 NM_005449 ENSG00000162894 FCMR FAIM3|TOSO Fc fragment of IgM receptor protein-coding 2139.33 chr3 185280495 185281372 + 8 NA Intergenic Intergenic -2008 NR_038322 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 3460.33 chr7 71733090 71733921 + 8 NA Intergenic Intergenic -425735 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 2408.67 chr1 197526646 197527612 + 8 NA intron (NR_125340, intron 17 of 19) intron (NR_125340, intron 17 of 19) 248351 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 2207.5 chr3 4289883 4291088 + 8 NA Intergenic Intergenic -12819 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 2659.83-2 chr8 26690044 26691104 + 8 NA Intergenic MIR|SINE|MIR 112169 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 1637.67 chr6 43170810 43171691 + 8 NA promoter-TSS (NM_003131) promoter-TSS (NM_003131) -19 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 1942.17 chr22 24938530 24939405 + 8 NA intron (NM_001001663, intron 2 of 3) MER91B|DNA|hAT-Tip100 7728 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 1870.67 chr22 26645083 26646371 + 8 NA Intergenic L4_A_Mam|LINE|RTE-X -11755 NR_033319 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript ncRNA 2789.83 chr8 124425273 124426450 + 8 NA Intergenic Intergenic -24959 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 2195.5 chr4 68271510 68272216 + 8 NA Intergenic Intergenic -26169 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 895.167 chr7 24812277 24812735 + 8 NA intron (NR_104111, intron 18 of 21) intron (NR_104111, intron 18 of 21) -54567 NM_004403 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 1762.67 chr6 40824442 40824896 + 8 NA Intergenic Intergenic 198611 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 1414.67 chr19 40463889 40464726 + 8 NA intron (NM_000713, intron 1 of 4) AluJr|SINE|Alu 1438 NM_000713 645 Hs.515785 NM_000713 ENSG00000090013 BLVRB BVRB|FLR|HEL-S-10|SDR43U1 biliverdin reductase B protein-coding 3083.33 chr20 39049589 39050492 + 8 NA Intergenic CpG 87696 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 1965 chr7 25216448 25217511 + 8 NA Intergenic Intergenic 11507 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 3039.33 chr2 27682297 27684139 + 8 NA intron (NM_018158, intron 9 of 13) MIRb|SINE|MIR -19378 NM_001282732 9913 Hs.6232 NM_014860 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H SPT7 like, STAGA complex gamma subunit protein-coding 1908.67 chr1 167267680 167268369 + 8 NA intron (NM_001365848, intron 2 of 17) intron (NM_001365848, intron 2 of 17) 47138 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 1385.66 chr7 39519650 39520757 + 8 NA Intergenic AluSg|SINE|Alu -46201 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 3046.83 chr7 41696309 41697423 + 8 NA intron (NR_027118, intron 1 of 3) intron (NR_027118, intron 1 of 3) 2947 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 1368.5-4 chr7 32210460 32211124 + 8 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 88536 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1869.83 chr22 24768410 24769309 + 7.83333 NA intron (NM_001008496, intron 1 of 20) intron (NM_001008496, intron 1 of 20) 4358 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 3030.17 chr14 59576231 59577283 + 7.83333 NA promoter-TSS (NM_001164399) promoter-TSS (NM_001164399) 55 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 1837 chr18 5867839 5868747 + 7.83333 NA Intergenic Intergenic 27598 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 1231.17 chr17 59746313 59747052 + 7.83333 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 39028 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 4582.83 chr14 56489840 56492119 + 7.83333 NA Intergenic Intergenic -23352 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 1725 chr12 54993000 54993461 + 7.83333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -8468 NM_001351149 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 1593.17 chr3 132352516 132353073 + 7.83333 NA exon (NM_001134194, exon 9 of 11) exon (NM_001134194, exon 9 of 11) 35387 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 1567.5 chr12 1117627 1118220 + 7.83333 NA intron (NR_027948, intron 6 of 19) intron (NR_027948, intron 6 of 19) 90175 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 2414 chr10 29386101 29387266 + 7.83333 NA Intergenic Intergenic -22851 NR_110924 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 1767.5 chr2 68462885 68463873 + 7.83333 NA 3' UTR (NM_001024680, exon 4 of 4) 3' UTR (NM_001024680, exon 4 of 4) 3915 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 1942.5 chr8 121248390 121249180 + 7.83333 NA Intergenic Intergenic -390561 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 1895.5-2 chr5 14351837 14352452 + 7.83333 NA intron (NM_007118, intron 11 of 56) intron (NM_007118, intron 11 of 56) -111839 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 3049.33 chr4 60200915 60201881 + 7.83333 NA Intergenic L2|LINE|L2 -721221 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 1839.5 chr1 239951231 239951924 + 7.83333 NA Intergenic Intergenic -51705 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 2003.83 chr7 19753879 19754747 + 7.83333 NA intron (NM_001366627, intron 1 of 4) intron (NM_001366627, intron 1 of 4) 18468 NM_152774 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 3707.17 chr8 139022675 139023782 + 7.83333 NA Intergenic Intergenic -109187 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 2446.83 chr3 136250287 136250985 + 7.83333 NA intron (NM_000532, intron 1 of 14) CpG 296 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 3216 chr4 40316991 40317745 + 7.83333 NA intron (NR_121640, intron 1 of 2) intron (NR_121640, intron 1 of 2) 884 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 1049.67-4 chr2 232440606 232441156 + 7.83333 NA Intergenic Intergenic -15272 NM_001631 248 Hs.37009 NM_001631 ENSG00000163295 ALPI IAP alkaline phosphatase, intestinal protein-coding 1936.67 chr6 37210258 37211035 + 7.83333 NA Intergenic Intergenic 40494 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 2701 chr6 34986341 34987305 + 7.83333 NA intron (NM_015245, intron 8 of 23) intron (NM_015245, intron 8 of 23) 97568 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 2130.17 chr15 64727948 64728947 + 7.83333 NA Intergenic Intergenic -25166 NM_001301302 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 2636.83 chr4 111641779 111642780 + 7.83333 NA Intergenic Intergenic -503175 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 2460.67 chr8 126875740 126876980 + 7.83333 NA Intergenic Intergenic -136794 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 2029 chr1 203272997 203273525 + 7.83333 NA Intergenic Intergenic -13891 NR_117097 100506775 Hs.443859 NR_117097 ENSG00000231507 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 1776.33 chr3 46078747 46079598 + 7.83333 NA Intergenic ERV24_Prim-int|LTR|ERV1 -51689 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 4336.67 chr2 16608470 16609609 + 7.83333 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 56795 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 3414 chr5 151740010 151741749 + 7.83333 NA Intergenic Intergenic 17752 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 2376.5 chr2 169928085 169929003 + 7.83333 NA intron (NM_172070, intron 17 of 38) intron (NM_172070, intron 17 of 38) 101036 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 4962.5 chr16 13918973 13920427 + 7.83333 NA promoter-TSS (NM_005236) promoter-TSS (NM_005236) -457 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 910.667 chr12 813983 814731 + 7.83333 NA intron (NM_001184985, intron 2 of 27) intron (NM_001184985, intron 2 of 27) 61434 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 399.667-11 chrM 5695 5859 + 7.83333 NA Intergenic Intergenic 1737 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 2373.83 chr1 152188536 152189421 + 7.83333 NA Intergenic CpG -29750 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 1978.67 chr6 35241055 35241741 + 7.83333 NA intron (NM_001303136, intron 10 of 21) intron (NM_001303136, intron 10 of 21) -18337 NM_003427 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 2278.17 chr7 8418486 8419315 + 7.83333 NA Intergenic Intergenic -14709 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 3025 chr5 18465582 18466529 + 7.83333 NA Intergenic Intergenic 658781 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 2393.33 chr1 152869574 152870424 + 7.83333 NA Intergenic Intergenic -8323 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 3185.33 chr8 122794815 122795561 + 7.83333 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 13533 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 2994.66 chr8 132650716 132652108 + 7.83333 NA intron (NR_135912, intron 3 of 11) intron (NR_135912, intron 3 of 11) 24133 NM_001321965 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 1686.67 chr15 56052583 56053531 + 7.83333 NA Intergenic Intergenic -59445 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 1576.83-3 chr2 48946137 48947115 + 7.83333 NA Intergenic Intergenic -112977 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 2225.17 chr3 131794505 131795268 + 7.83333 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 191045 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 2044.5 chr11 83816356 83817083 + 7.83333 NA intron (NM_001142699, intron 17 of 27) intron (NM_001142699, intron 17 of 27) -134294 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 999.167 chr10 122267996 122268453 + 7.83333 NA Intergenic Intergenic -3072 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 1716.33 chr8 143430763 143431227 + 7.83333 NA promoter-TSS (NM_201589) promoter-TSS (NM_201589) -263 NM_201589 389692 NM_201589 ENSG00000182759 MAFA INSDM|RIPE3b1|hMafA MAF bZIP transcription factor A protein-coding 2329.67 chr14 73728680 73729340 + 7.83333 NA intron (NM_001367710, intron 4 of 12) MIRb|SINE|MIR -14626 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 1687.5 chr5 107673654 107674308 + 7.83333 NA Intergenic Intergenic -3044 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 1145.83-4 chr3 134308138 134308737 + 7.66667 NA Intergenic MIRb|SINE|MIR -5139 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 3610.33 chr7 50141935 50142949 + 7.66667 NA intron (NM_001161834, intron 7 of 8) intron (NM_001161834, intron 7 of 8) 46356 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 2442 chr1 84620754 84621490 + 7.66667 NA promoter-TSS (NR_125761) promoter-TSS (NR_125761) -91 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 1673.83 chr5 36177662 36178384 + 7.66667 NA intron (NM_032637, intron 9 of 9) intron (NM_032637, intron 9 of 9) 25912 NM_005983 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 1993.67 chr8 80991790 80992614 + 7.66667 NA intron (NM_018440, intron 4 of 8) intron (NM_018440, intron 4 of 8) -117421 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 2536.33 chr6 50601563 50602801 + 7.66667 NA Intergenic Intergenic -111362 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 1791.67 chr12 53421358 53422140 + 7.66667 NA Intergenic Intergenic -2106 NM_001164690 269 Hs.659889 NM_020547 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor type 2 protein-coding 2625.17 chr17 70766572 70767893 + 7.66667 NA Intergenic Intergenic 434947 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1428.17 chr7 137903456 137903848 + 7.66667 NA intron (NM_001318246, intron 7 of 11) intron (NM_001318246, intron 7 of 11) 29336 NM_001318246 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 2184.17 chr2 17309500 17310785 + 7.66667 NA Intergenic L3|LINE|CR1 208298 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 1487.83 chr1 56820983 56821811 + 7.66667 NA Intergenic Intergenic -1993 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 2308.67-2 chr17 59310531 59311376 + 7.66667 NA Intergenic MER20|DNA|hAT-Charlie -20702 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 2011.33-2 chr8 58513189 58513987 + 7.66667 NA Intergenic Intergenic -13425 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 1819.33 chr10 75230110 75231159 + 7.66667 NA intron (NM_001324090, intron 11 of 11) intron (NM_001324090, intron 11 of 11) 5323 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 2293.67 chr11 76806999 76807960 + 7.66667 NA Intergenic Intergenic 15727 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 2428.5 chr14 44803023 44804019 + 7.66667 NA Intergenic Intergenic -4395 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 1021.67 chr2 68031552 68032083 + 7.66667 NA Intergenic Intergenic 31187 NM_173177 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 2053.5 chr18 12726946 12727553 + 7.66667 NA Intergenic Intergenic 22173 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 2386.5 chr12 49740935 49741783 + 7.66667 NA promoter-TSS (NM_003217) promoter-TSS (NM_003217) -198 NM_003217 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 1795.83 chr17 55770206 55770698 + 7.66667 NA intron (NM_001330377, intron 2 of 5) intron (NM_001330377, intron 2 of 5) 19347 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 2196.33-2 chr2 50492235 50493326 + 7.66667 NA intron (NM_001330093, intron 15 of 22) intron (NM_001330093, intron 15 of 22) -145024 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 2143.5 chr8 117328398 117329528 + 7.66667 NA Intergenic Intergenic -191750 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 2157.67 chr17 41665537 41666520 + 7.66667 NA Intergenic CpG -22857 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 1902 chr14 68911339 68912016 + 7.66667 NA intron (NM_001102, intron 4 of 20) intron (NM_001102, intron 4 of 20) 67625 NM_001130005 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 1855.17 chr14 58501162 58501663 + 7.66667 NA intron (NM_001329944, intron 27 of 31) intron (NM_001329944, intron 27 of 31) 61731 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 2050 chr2 99558672 99559538 + 7.66667 NA intron (NM_001025108, intron 20 of 23) intron (NM_001025108, intron 20 of 23) -69088 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 2503 chr12 55619566 55620215 + 7.66667 NA Intergenic Intergenic -17002 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 1267.33 chr15 59528575 59529565 + 7.66667 NA Intergenic Intergenic -82713 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 2314.5 chr7 32204074 32204988 + 7.66667 NA intron (NM_001322059, intron 2 of 17) intron (NM_001322059, intron 2 of 17) 94797 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1864.83 chr1 56831820 56832518 + 7.66667 NA Intergenic Intergenic -12765 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 1652.66 chr2 226802421 226803280 + 7.66667 NA intron (NM_001349069, intron 1 of 8) intron (NM_001349069, intron 1 of 8) 2691 NM_001349069 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 1704.33-2 chr2 142989263 142989928 + 7.66667 NA 3' UTR (NM_001032998, exon 12 of 12) 3' UTR (NM_001032998, exon 12 of 12) 111931 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 1337.5 chr19 35693458 35694025 + 7.66667 NA Intergenic Intergenic -10817 NM_001316902 27033 Hs.99430 NM_014383 ENSG00000011590 ZBTB32 FAXF|FAZF|Rog|TZFP|ZNF538 zinc finger and BTB domain containing 32 protein-coding 3500.67 chr6 123415359 123416379 + 7.66667 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -23735 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 1865.83 chr20 49216855 49217966 + 7.66667 NA intron (NM_001319135, intron 1 of 14) LTR50|LTR|ERVL -1885 NM_017895 55661 Hs.65234 NM_017895 ENSG00000124228 DDX27 DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1 DEAD-box helicase 27 protein-coding 1215.33 chr16 2340700 2341388 + 7.66667 NA promoter-TSS (NM_001089) promoter-TSS (NM_001089) 122 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 1634.33 chr20 31513895 31514456 + 7.66667 NA promoter-TSS (NM_178582) promoter-TSS (NM_178582) -235 NM_030789 81502 Hs.373741 NM_030789 ENSG00000101294 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1 histocompatibility minor 13 protein-coding 2196.83 chr8 129725881 129726902 + 7.66667 NA Intergenic Intergenic -46152 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 1846.5 chr19 28878889 28879764 + 7.66667 NA Intergenic Intergenic -85805 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 1195.17 chr17 42428109 42428610 + 7.66667 NA Intergenic Intergenic -5103 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 CAVIN1 CAVIN|CGL4|FKSG13|PTRF|cavin-1 caveolae associated protein 1 protein-coding 1160.67 chr1 205353986 205354866 + 7.66667 NA intron (NM_001271865, intron 2 of 7) intron (NM_001271865, intron 2 of 7) 2496 NM_018203 55220 Hs.10414 NM_018203 ENSG00000162873 KLHDC8A - kelch domain containing 8A protein-coding 2630.5 chr12 7645134 7646355 + 7.66667 NA Intergenic HUERS-P3-int|LTR|ERV1 20164 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 1674.67 chr17 9924602 9924979 + 7.66667 NA intron (NM_003644, intron 7 of 9) intron (NM_003644, intron 7 of 9) -19519 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 1730.83 chr6 52882098 52882542 + 7.66667 NA Intergenic Intergenic 27378 NM_000847 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 2184.83 chr10 52215677 52216398 + 7.66667 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 98091 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 1764.83 chr1 63557169 63557773 + 7.66667 NA intron (NM_032437, intron 10 of 13) intron (NM_032437, intron 10 of 13) 8491 NR_002771 79469 Hs.659291 NR_002771 DLEU2L BCMSUNL deleted in lymphocytic leukemia 2 like ncRNA 2080.5 chr14 64891591 64892528 + 7.66667 NA Intergenic Intergenic -12152 NM_001355437 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 3868 chr8 124475219 124476779 + 7.66667 NA intron (NM_007218, intron 1 of 1) intron (NM_007218, intron 1 of 1) 1232 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 4369.83 chr3 187739679 187742475 + 7.5 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) 4391 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 1739.83 chrX 100447558 100448211 + 7.5 NA Intergenic Intergenic -37611 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 2708 chr15 23642168 23643075 + 7.5 NA TTS (NM_019066) TTS (NM_019066) 5246 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 2252.33 chr1 238251681 238252834 + 7.5 NA Intergenic L2b|LINE|L2 233760 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 3726 chr17 78013199 78014688 + 7.5 NA intron (NM_018996, intron 2 of 20) intron (NM_018996, intron 2 of 20) 9706 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 1430.67-2 chr5 54845052 54845771 + 7.5 NA Intergenic Intergenic -101153 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 1860.67 chr14 68824762 68825322 + 7.5 NA Intergenic Intergenic -28799 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 1797.33 chr13 94435351 94436090 + 7.5 NA Intergenic Intergenic 43962 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 1324.17-2 chr5 91384660 91385540 + 7.5 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) -1783 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 1985.5 chr5 38441455 38442398 + 7.5 NA intron (NM_182798, intron 12 of 16) intron (NM_182798, intron 12 of 16) -3620 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 1105-2 chr7 19708825 19709525 + 7.5 NA promoter-TSS (NM_001002926) promoter-TSS (NM_001002926) -138 NM_001002926 221830 Hs.353035 NM_001002926 ENSG00000105849 TWISTNB - TWIST neighbor protein-coding 1812.33 chr1 27663115 27663599 + 7.5 NA promoter-TSS (NR_151722) promoter-TSS (NR_151722) -635 NR_151722 111216282 Hs.297628 NR_151722 ENSG00000233975 LINC02574 - long intergenic non-protein coding RNA 2574 ncRNA 2172 chr12 4526767 4527565 + 7.5 NA intron (NR_144382, intron 3 of 9) intron (NR_144382, intron 3 of 9) 11303 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 1718.33 chr6 120378213 120378777 + 7.5 NA Intergenic Intergenic 363316 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 2025.83 chr2 167211845 167212634 + 7.5 NA intron (NM_001199144, intron 2 of 8) intron (NM_001199144, intron 2 of 8) 24867 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 1535-2 chr8 108722785 108723201 + 7.5 NA intron (NR_136411, intron 1 of 3) MIRb|SINE|MIR 64601 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 3078.17 chr5 129767017 129768609 + 7.5 NA Intergenic Intergenic 19719 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 2318.17 chr4 57190686 57191660 + 7.5 NA intron (NR_034081, intron 2 of 4) intron (NR_034081, intron 2 of 4) -80788 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 1631.67 chr6 41591978 41592634 + 7.5 NA intron (NM_001012427, intron 13 of 16) intron (NM_001012427, intron 13 of 16) -6417 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 1723.5 chr1 44730967 44731750 + 7.5 NA promoter-TSS (NR_002755) promoter-TSS (NR_002755) -190 NR_002755 26830 NR_002755 ENSG00000200169 RNU5D-1 RNU5D|U5DL|U5DS RNA, U5D small nuclear 1 snRNA 1709.5-2 chr8 9829588 9829929 + 7.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 73571 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 4046.33 chr15 81265727 81266886 + 7.5 NA intron (NM_001352686, intron 4 of 18) MIRb|SINE|MIR -30664 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 1591.5 chr6 34609078 34610039 + 7.5 NA intron (NM_022758, intron 2 of 3) intron (NM_022758, intron 2 of 3) -53225 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 2878.17 chr10 15419254 15419912 + 7.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -48294 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 2177.5 chr14 20857258 20858591 + 7.5 NA Intergenic Intergenic -33479 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 3176.17 chr1 70132648 70133646 + 7.5 NA 3' UTR (NM_001366841, exon 27 of 27) 3' UTR (NM_001366841, exon 27 of 27) 72432 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 1357.67 chr3 50971325 50971678 + 7.5 NA intron (NM_004947, intron 5 of 52) L1PA15-16|LINE|L1 296421 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 2513 chr10 104580309 104581357 + 7.5 NA Intergenic Intergenic -60457 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 1438.5 chr4 83639650 83640325 + 7.5 NA Intergenic Intergenic 103879 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 1152.17-2 chr2 201177307 201177839 + 7.5 NA TTS (NM_003879) TTS (NM_003879) -5325 NM_032977 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 2128 chr20 59519010 59520053 + 7.5 NA Intergenic Intergenic -57978 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1647.33 chr14 76875936 76876454 + 7.5 NA Intergenic Intergenic 49787 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 1404.5 chr22 37592706 37592963 + 7.5 NA Intergenic Intergenic -12747 NM_006498 3957 Hs.531776 NM_006498 ENSG00000100079 LGALS2 HL14 galectin 2 protein-coding 2191.33 chr20 52311653 52312617 + 7.5 NA Intergenic Intergenic -120150 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 1405.16 chr8 26570991 26571657 + 7.5 NA intron (NM_001197293, intron 1 of 13) intron (NM_001197293, intron 1 of 13) -6621 NM_001386 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 2868.33 chr2 57516526 57517569 + 7.5 NA Intergenic Intergenic -390604 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 2007.17 chr3 110314450 110315098 + 7.5 NA Intergenic Intergenic 711946 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 2234 chr8 86032995 86033846 + 7.5 NA Intergenic Intergenic 36248 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 2553.5 chr4 57163255 57164158 + 7.5 NA intron (NR_034081, intron 1 of 4) CpG -53321 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 2890 chr5 110756234 110757548 + 7.5 NA intron (NM_001303249, intron 7 of 7) intron (NM_001303249, intron 7 of 7) 17884 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 1922.33 chr10 103887974 103888925 + 7.5 NA intron (NM_024928, intron 9 of 9) intron (NM_024928, intron 9 of 9) 29735 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1 subunit of CST complex protein-coding 1973.84 chr11 26284454 26285384 + 7.5 NA TTS (NR_132968) TTS (NR_132968) 3088 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 2439 chr14 53432003 53433099 + 7.5 NA Intergenic Intergenic 279197 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 1760.33 chr14 76710066 76710953 + 7.33333 NA Intergenic Intergenic -50959 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 1553.17 chr22 27880576 27881371 + 7.33333 NA intron (NM_001284278, intron 7 of 11) intron (NM_001284278, intron 7 of 11) 38241 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 3848.67 chr2 99490026 99491535 + 7.33333 NA promoter-TSS (NM_016316) promoter-TSS (NM_016316) -763 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 1573.67 chr20 54646440 54647342 + 7.33333 NA intron (NM_018431, intron 7 of 7) intron (NM_018431, intron 7 of 7) 171298 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 1986.67 chr20 49978829 49979450 + 7.33333 NA Intergenic Intergenic -3841 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 3171.67 chr19 15555737 15556637 + 7.33333 NA Intergenic Intergenic 47662 NM_173483 126410 Hs.156452 NM_173483 ENSG00000171954 CYP4F22 ARCI5|INLNE|LI3 cytochrome P450 family 4 subfamily F member 22 protein-coding 1620.83 chr17 69235305 69236076 + 7.33333 NA promoter-TSS (NR_130736) promoter-TSS (NR_130736) -678 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 2059.83 chr5 160021590 160022270 + 7.33333 NA intron (NM_003314, intron 2 of 7) intron (NM_003314, intron 2 of 7) 12791 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 1967.33-2 chr5 132526469 132527163 + 7.33333 NA Intergenic Intergenic 16706 NM_000879 3567 Hs.2247 NM_000879 ENSG00000113525 IL5 EDF|IL-5|TRF interleukin 5 protein-coding 1624.33 chr9 26744118 26744974 + 7.33333 NA Intergenic Intergenic 148256 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 1297.83 chr15 89556624 89557284 + 7.33333 NA Intergenic L2c|LINE|L2 -18515 NM_152259 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 1726.5 chr8 120950708 120951657 + 7.33333 NA Intergenic Intergenic -139136 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 2299.83 chr2 170408749 170409759 + 7.33333 NA intron (NM_001083615, intron 22 of 33) intron (NM_001083615, intron 22 of 33) -58311 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 1532.67 chr1 223697925 223698647 + 7.33333 NA Intergenic Intergenic -3307 NM_001146068 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 1080-4 chr4 48962964 48963342 + 7.33333 NA Intergenic Intergenic -23122 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 2134.5-2 chr17 57833273 57834176 + 7.33333 NA Intergenic Intergenic 16320 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 829.167-3 chr7 73734487 73735072 + 7.33333 NA promoter-TSS (NR_026690) promoter-TSS (NR_026690) -290 NR_026690 171022 Hs.650513 NR_026690 ABHD11-AS1 LINC00035|NCRNA00035|WBSCR26 ABHD11 antisense RNA 1 (tail to tail) ncRNA 1351.83 chr4 7801969 7802627 + 7.33333 NA intron (NM_198595, intron 9 of 16) intron (NM_198595, intron 9 of 16) 48208 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 1536.67-2 chr14 75303473 75304004 + 7.33333 NA Intergenic Intergenic 9334 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 1695.67 chr6 154675276 154676026 + 7.33333 NA Intergenic Intergenic -57727 NM_001286189 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 1433.5 chr9 90871114 90871562 + 7.33333 NA intron (NM_001174167, intron 7 of 13) intron (NM_001174167, intron 7 of 13) 43918 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 1705 chr14 81464474 81464950 + 7.33333 NA Intergenic Intergenic -14555 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 3116.33 chr8 132055230 132056110 + 7.33333 NA intron (NM_001080399, intron 1 of 13) Tigger8|DNA|TcMar-Tigger 3712 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 954.833 chr16 6016308 6016775 + 7.33333 NA Intergenic Intergenic -2483 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 2161.17 chr22 22195234 22195798 + 7.33333 NA Intergenic Intergenic -49270 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 2253.33 chr11 10735715 10736576 + 7.33333 NA Intergenic Intergenic -15101 NM_001346279 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 1502 chr6 45930212 45930846 + 7.33333 NA intron (NR_045673, intron 1 of 4) intron (NR_045673, intron 1 of 4) 7068 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 1037-2 chr22 23173666 23174405 + 7.33333 NA Intergenic Intergenic -6474 NM_004327 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 2506.83 chr12 8108288 8109435 + 7.33333 NA Intergenic Intergenic -14771 NM_194450 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 1503.17 chr7 25069925 25070700 + 7.33333 NA Intergenic Intergenic 55049 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 2459.33 chr1 151070488 151071456 + 7.33333 NA intron (NM_001323913, intron 1 of 7) CpG 211 NM_001323912 126626 Hs.15671 NM_144618 ENSG00000143458 GABPB2 GABPB-2 GA binding protein transcription factor subunit beta 2 protein-coding 2155.33 chr2 56183324 56184153 + 7.33333 NA promoter-TSS (NM_001348512) promoter-TSS (NM_001348512) -252 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 2181.83 chr12 18139799 18140597 + 7.33333 NA Intergenic Intergenic -50005 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 2001.33 chr8 120123220 120124003 + 7.33333 NA Intergenic Intergenic -1491 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 1563.83 chr10 30581576 30582172 + 7.33333 NA Intergenic L1MC4|LINE|L1 47879 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 2766.67 chr5 52656921 52657867 + 7.33333 NA Intergenic Intergenic -130522 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 2292.67 chr11 33857626 33858444 + 7.33333 NA TTS (NM_005574) TTS (NM_005574) 11843 NM_001142316 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1224.67-2 chr5 37412967 37413419 + 7.33333 NA intron (NM_001345998, intron 5 of 17) intron (NM_001345998, intron 5 of 17) 33875 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 1560.33 chr11 59284687 59284965 + 7.33333 NA Intergenic Intergenic -71899 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 2329.17 chr8 117330045 117330726 + 7.33333 NA Intergenic Intergenic -190328 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 3365.67 chr6 38493064 38494886 + 7.33333 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 12379 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 1809.33 chr17 65556070 65556838 + 7.33333 NA intron (NM_001363813, intron 2 of 9) intron (NM_001363813, intron 2 of 9) 5194 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 1634.5-2 chr18 32552386 32552874 + 7.33333 NA Intergenic Intergenic 40967 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 2165.83 chr10 20855119 20856346 + 7.33333 NA intron (NM_006393, intron 9 of 27) intron (NM_006393, intron 9 of 27) 41870 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 1671.5-2 chr4 107913462 107913915 + 7.33333 NA 3' UTR (NM_001136258, exon 7 of 7) 3' UTR (NM_001136258, exon 7 of 7) -17861 NM_183075 113612 Hs.109087 NM_183075 ENSG00000155016 CYP2U1 P450TEC|SPG49|SPG56 cytochrome P450 family 2 subfamily U member 1 protein-coding 1677.17 chr13 65638742 65639198 + 7.33333 NA Intergenic HERVL40-int|LTR|ERVL -227077 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 2302.5 chr9 32526307 32526962 + 7.33333 NA promoter-TSS (NM_014314) promoter-TSS (NM_014314) -438 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 2585 chr18 5057482 5059442 + 7.33333 NA Intergenic Intergenic -22720 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 5140.5 chr5 57297975 57299524 + 7.33333 NA Intergenic Intergenic 84675 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 1238.83 chr1 94854043 94855139 + 7.33333 NA intron (NM_001258340, intron 9 of 14) intron (NM_001258340, intron 9 of 14) 30098 NM_001350223 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 2419.67 chr20 46013510 46014572 + 7.33333 NA non-coding (NR_147699, exon 3 of 3) non-coding (NR_147699, exon 3 of 3) 5133 NM_004994 4318 Hs.297413 NM_004994 ENSG00000100985 MMP9 CLG4B|GELB|MANDP2|MMP-9 matrix metallopeptidase 9 protein-coding 2102.17 chr19 50724497 50725127 + 7.33333 NA intron (NM_002975, intron 3 of 3) CpG-15011 1448 NM_002975 6320 Hs.512680 NM_002975 ENSG00000105472 CLEC11A CLECSF3|LSLCL|P47|SCGF C-type lectin domain containing 11A protein-coding 1608.17 chr1 152459880 152461132 + 7.33333 NA Intergenic Intergenic -46243 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 3010.33 chr22 21937868 21938986 + 7.33333 NA non-coding (NR_147620, exon 1 of 2) non-coding (NR_147620, exon 1 of 2) 190 NR_147620 100286925 Hs.659180 NR_147620 LOC100286925 - uncharacterized LOC100286925 ncRNA 1336 chr22 25202105 25202577 + 7.33333 NA intron (NM_004076, intron 2 of 5) MER102c|DNA|hAT-Charlie 2483 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 2961.67 chr2 50144149 50145262 + 7.33333 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -170502 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1708.67 chr8 81890397 81891271 + 7.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -48548 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 1926.83 chr5 102583506 102583973 + 7.33333 NA intron (NR_047462, intron 1 of 1) intron (NR_047462, intron 1 of 1) 2371 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 2146.5-2 chr2 68185378 68185963 + 7.33333 NA intron (NM_000945, intron 5 of 5) intron (NM_000945, intron 5 of 5) 27782 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 1341 chr20 20837022 20837723 + 7.33333 NA Intergenic Intergenic -124728 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 1287.17 chr6 56904069 56904808 + 7.33333 NA intron (NM_001144769, intron 2 of 96) MIR|SINE|MIR 50392 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 1651 chr14 54396091 54397044 + 7.33333 NA promoter-TSS (NM_001130851) promoter-TSS (NM_001130851) -301 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 1895.17 chr10 62264585 62265303 + 7.33333 NA intron (NM_001282941, intron 1 of 4) intron (NM_001282941, intron 1 of 4) 3900 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 3986.33 chr17 41662332 41663564 + 7.33333 NA Intergenic Intergenic -22749 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 1889.5 chr11 82229281 82229832 + 7.33333 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 174357 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 554-2 chr13 46126711 46126808 + 7.16667 NA 3' UTR (NM_002298, exon 16 of 16) 3' UTR (NM_002298, exon 16 of 16) -21683 NM_001278541 1361 Hs.512937 NM_001872 ENSG00000080618 CPB2 CPU|PCPB|TAFI carboxypeptidase B2 protein-coding 710.5 chr8 69663574 69664111 + 7.16667 NA Intergenic Intergenic 70942 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 1983.67 chr5 59724351 59725124 + 7.16667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -21034 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 2212.83 chr22 36065612 36066517 + 7.16667 NA Intergenic CpG -37240 NM_001082578 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 1740.67 chr1 63575135 63575859 + 7.16667 NA Intergenic Intergenic -17914 NM_002633 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 1307.5-2 chrX 74343892 74344494 + 7.16667 NA Intergenic LTR55|LTR|ERVL? 40013 NM_203303 389874 Hs.157231 NM_203303 ENSG00000187969 ZCCHC13 CNBP2|ZNF9L zinc finger CCHC-type containing 13 protein-coding 1729.5 chr1 163315520 163316226 + 7.16667 NA intron (NM_001254748, intron 1 of 5) intron (NM_001254748, intron 1 of 5) 5918 NR_045630 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 1236 chr3 129245633 129246218 + 7.16667 NA Intergenic Intergenic -3681 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 1248.17 chr16 4624194 4624723 + 7.16667 NA promoter-TSS (NM_001142289) promoter-TSS (NM_001142289) -366 NR_102267 23295 Hs.526494 NM_015246 ENSG00000102858 MGRN1 RNF156 mahogunin ring finger 1 protein-coding 1480.67 chr8 86618696 86619444 + 7.16667 NA intron (NM_019098, intron 13 of 17) intron (NM_019098, intron 13 of 17) 104635 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 1479.33 chr16 2022877 2023636 + 7.16667 NA Intergenic Intergenic 3471 NM_001099456 283869 Hs.233533 NM_001099456 ENSG00000183971 NPW L8|L8C|PPL8|PPNPW neuropeptide W protein-coding 721.334 chr17 31901782 31902112 + 7.16667 NA promoter-TSS (NM_018428) promoter-TSS (NM_018428) -239 NM_018428 55813 Hs.589862 NM_018428 ENSG00000108651 UTP6 C17orf40|HCA66 UTP6 small subunit processome component protein-coding 1635.33 chr10 77165581 77166362 + 7.16667 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 25140 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 2387.67 chr16 67520978 67522041 + 7.16667 NA intron (NR_104656, intron 1 of 1) intron (NR_104656, intron 1 of 1) 7236 NR_104656 100505942 Hs.121233 NR_104656 LOC100505942 - uncharacterized LOC100505942 ncRNA 1793.17 chr3 160941858 160942583 + 7.16667 NA intron (NM_001317912, intron 2 of 4) intron (NM_001317912, intron 2 of 4) 71622 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 1686 chr17 75855327 75856148 + 7.16667 NA promoter-TSS (NM_001330499) promoter-TSS (NM_001330499) -402 NM_012478 23558 Hs.514489 NM_012478 ENSG00000132471 WBP2 DFNB107|GRAMD6|WBP-2 WW domain binding protein 2 protein-coding 2567.83 chr20 35992622 35993507 + 7.16667 NA intron (NM_001365709, intron 7 of 11) intron (NM_001365709, intron 7 of 11) 24474 NM_001304367 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 1527.67-2 chr6 63923084 63923589 + 7.16667 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 116500 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 1477 chr1 62144002 62144727 + 7.16667 NA intron (NM_001350145, intron 41 of 43) L3|LINE|CR1 -50485 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 1501.17 chr8 144126276 144126896 + 7.16667 NA Intergenic Intergenic -11188 NM_016458 51236 Hs.300224 NM_016458 ENSG00000235173 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog protein-coding 2150.83 chr21 30340586 30341764 + 7.16667 NA Intergenic Intergenic -3481 NM_001077711 643812 Hs.580881 NM_001077711 ENSG00000206107 KRTAP27-1 - keratin associated protein 27-1 protein-coding 1811.5 chr1 45014383 45014866 + 7.16667 NA intron (NR_036510, intron 7 of 9) intron (NR_036510, intron 7 of 9) 2370 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 2344.5 chr14 75906270 75907209 + 7.16667 NA intron (NM_015072, intron 31 of 31) intron (NM_015072, intron 31 of 31) 75256 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 1813.17 chr15 95259159 95259857 + 7.16667 NA Intergenic Intergenic 67592 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 1755.67-2 chr3 36868593 36869338 + 7.16667 NA intron (NM_001329998, intron 9 of 23) intron (NM_001329998, intron 9 of 23) -46465 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 2888.67 chr17 60599806 60602105 + 7.16667 NA intron (NM_003620, intron 1 of 5) intron (NM_003620, intron 1 of 5) 772 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 1857.67-2 chr4 44629050 44629741 + 7.16667 NA intron (NM_182592, intron 4 of 5) intron (NM_182592, intron 4 of 5) 22246 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 2357.17 chr14 69574385 69575508 + 7.16667 NA promoter-TSS (NM_001271507) promoter-TSS (NM_001271507) -75 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 3260.83 chr21 26849177 26850682 + 7.16667 NA Intergenic Intergenic -4520 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 2931.17 chr8 132874882 132876054 + 7.16667 NA intron (NM_003235, intron 5 of 47) MIR|SINE|MIR 8510 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 1693 chr10 99435782 99436391 + 7.16667 NA Intergenic Intergenic -5462 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 1370.67 chr12 39318064 39318613 + 7.16667 NA intron (NM_001173464, intron 28 of 37) intron (NM_001173464, intron 28 of 37) 124782 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 2659.16 chr4 112321502 112322279 + 7.16667 NA intron (NM_001102406, intron 2 of 15) intron (NM_001102406, intron 2 of 15) 24521 NM_025144 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 1523.67 chr12 6835667 6836242 + 7.16667 NA intron (NM_014262, intron 9 of 14) AluJb|SINE|Alu -4971 NM_002075 2784 Hs.631657 NM_002075 ENSG00000111664 GNB3 CSNB1H G protein subunit beta 3 protein-coding 2319.83 chr1 110780683 110781837 + 7.16667 NA Intergenic Intergenic -89939 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 2129.5 chr16 74709115 74709910 + 7.16667 NA Intergenic Intergenic -8650 NM_001142497 197259 Hs.119878 NM_152649 ENSG00000168404 MLKL hMLKL mixed lineage kinase domain like pseudokinase protein-coding 1904.17 chr1 110783256 110783750 + 7.16667 NA Intergenic Intergenic -87696 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 1594.5 chr7 30564192 30564963 + 7.16667 NA intron (NR_038889, intron 3 of 6) intron (NR_038889, intron 3 of 6) 13202 NR_038889 401320 Hs.561708 NR_038889 GARS-DT - GARS divergent transcript ncRNA 1666.17 chr1 66726022 66726547 + 7.16667 NA intron (NM_001350218, intron 17 of 22) LTR41|LTR|ERVL -26175 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 2053.67 chr20 59087708 59088276 + 7.16667 NA Intergenic Intergenic -45146 NR_037930 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 1181.83 chr2 65040550 65041277 + 7.16667 NA Intergenic Intergenic -15503 NR_134966 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 1014.17 chr10 117221076 117221499 + 7.16667 NA Intergenic MER5B|DNA|hAT-Charlie -19827 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 2315.67 chr22 35350489 35351432 + 7.16667 NA Intergenic Intergenic -14161 NR_106717 102464824 NR_106717 ENSG00000274280 MIR6069 hsa-mir-6069 microRNA 6069 ncRNA 1540.67 chr2 163169411 163169892 + 7.16667 NA Intergenic Intergenic -330884 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 1260.5 chr14 30270581 30271185 + 7.16667 NA Intergenic Intergenic -288240 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 2825.33 chr8 140466904 140468061 + 7.16667 NA Intergenic Intergenic -8903 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 2404.17 chr14 37230223 37231037 + 7.16667 NA intron (NM_138731, intron 2 of 13) intron (NM_138731, intron 2 of 13) 32693 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 1179.17 chr14 61252916 61253256 + 7.16667 NA Intergenic Intergenic 28252 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 1898.17 chr1 88935859 88936525 + 7.16667 NA exon (NM_001349448, exon 15 of 15) exon (NM_001349448, exon 15 of 15) -44625 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 2262.5 chr1 24150029 24150692 + 7.16667 NA Intergenic Intergenic -7220 NM_021258 58985 Hs.110915 NM_021258 ENSG00000142677 IL22RA1 CRF2-9|IL22R|IL22R1 interleukin 22 receptor subunit alpha 1 protein-coding 1374.17-2 chr8 142699591 142700664 + 7.16667 NA promoter-TSS (NM_001160354) promoter-TSS (NM_001160354) 16 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 2111.33 chr4 47122625 47123355 + 7.16667 NA intron (NM_000812, intron 3 of 8) LTR50|LTR|ERVL 91423 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 3135.83 chr7 36318826 36319921 + 7.16667 NA Intergenic AluSz|SINE|Alu 47867 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 2437.5 chr9 86414046 86414828 + 7.16667 NA Intergenic Intergenic -60027 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 1038.17-2 chr6 113879660 113880449 + 7.16667 NA Intergenic Intergenic -6707 NR_038863 285758 Hs.359399 NR_038863 ENSG00000227502 LINC01268 ROCKI long intergenic non-protein coding RNA 1268 ncRNA 1086.17 chr1 166910329 166910680 + 7.16667 NA 3' UTR (NM_199351, exon 10 of 10) 3' UTR (NM_199351, exon 10 of 10) -34240 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 1510 chr20 20860129 20860745 + 7.16667 NA Intergenic Intergenic -147793 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 1405.17 chr15 66862056 66863661 + 7.16667 NA Intergenic Intergenic 93657 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 2041.67 chr8 119768551 119769714 + 7.16667 NA intron (NM_003184, intron 18 of 25) L1PA15-16|LINE|L1 63709 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 1615 chr17 49998184 49998718 + 7.16667 NA Intergenic Intergenic -3227 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 1304.83 chr8 56028975 56029428 + 7.16667 NA Intergenic Intergenic 44700 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 2012.5 chr3 68875961 68876731 + 7.16667 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 56201 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 1140 chr1 40669019 40669368 + 7.16667 NA Intergenic MIRb|SINE|MIR -3511 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 1534.5 chr6 83065868 83066478 + 7.16667 NA promoter-TSS (NM_198920) promoter-TSS (NM_198920) -332 NR_146807 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 1497.17 chr1 183633484 183634434 + 7.16667 NA intron (NM_001270439, intron 1 of 3) intron (NM_001270439, intron 1 of 3) 1824 NM_005717 10092 Hs.518609 NM_005717 ENSG00000162704 ARPC5 ARC16|dJ127C7.3|p16-Arc actin related protein 2/3 complex subunit 5 protein-coding 2243.83 chr14 25400217 25401118 + 7 NA Intergenic Intergenic -350370 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 1682.5 chr17 59754227 59755080 + 7 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 46999 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 1354.67 chr4 147708097 147708528 + 7 NA Intergenic MER20B|DNA|hAT-Charlie -23776 NM_024605 79658 Hs.368631 NM_024605 ENSG00000071205 ARHGAP10 GRAF2|PS-GAP|PSGAP Rho GTPase activating protein 10 protein-coding 1986 chr8 133202672 133203528 + 7 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 12061 NM_003882 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 633.667-3 chr14 90399611 90399813 + 7 NA intron (NM_001363670, intron 1 of 5) AmnSINE1|SINE|5S-Deu-L2 1462 NM_001363670 801 Hs.282410 NM_006888 ENSG00000198668 CALM1 CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|caM calmodulin 1 protein-coding 1550.17 chr3 100316465 100316927 + 7 NA intron (NM_001199198, intron 16 of 18) intron (NM_001199198, intron 16 of 18) -18061 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 2825.67 chr8 133568881 133570356 + 7 NA intron (NM_003033, intron 1 of 8) intron (NM_003033, intron 1 of 8) 2269 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1588 chr2 106104123 106104818 + 7 NA intron (NM_025076, intron 11 of 14) intron (NM_025076, intron 11 of 14) 34411 NM_001253876 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 743.167-2 chr10 86939225 86939646 + 7 NA intron (NM_024756, intron 6 of 6) AluSg|SINE|Alu -16324 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 1142 chr7 1412714 1413118 + 7 NA Intergenic CpG 46554 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 1325-2 chr21 17585571 17586361 + 7 NA intron (NM_001207066, intron 7 of 7) intron (NM_001207066, intron 7 of 7) -25720 NR_149073 110806272 Hs.607138 NR_149073 ENSG00000280594 BTG3-AS1 ASBEL BTG3 antisense RNA 1 ncRNA 2910.83 chr6 41787012 41788217 + 7 NA TTS (NM_013397) TTS (NM_013397) 171 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 1933.83 chr11 35616133 35616719 + 7 NA Intergenic Intergenic -2034 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 2202.83 chr2 106581985 106583018 + 7 NA Intergenic (A)n|Simple_repeat|Simple_repeat 95137 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 2002.33 chr2 11584216 11584899 + 7 NA intron (NM_014668, intron 7 of 32) (ATG)n|Simple_repeat|Simple_repeat 41871 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 1172.17-2 chr14 20461576 20461985 + 7 NA promoter-TSS (NM_001100814) promoter-TSS (NM_001100814) -168 NM_144568 90809 Hs.7001 NM_144568 ENSG00000165782 PIP4P1 C14orf9|TMEM55B phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 protein-coding 1359.5 chr9 128927970 128928417 + 7 NA intron (NM_001100877, intron 2 of 9) intron (NM_001100877, intron 2 of 9) 5910 NM_001100877 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 2319.5 chr1 183685068 183685887 + 7 NA intron (NM_001297670, intron 1 of 17) intron (NM_001297670, intron 1 of 17) -32161 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 1404 chr2 225889156 225890128 + 7 NA Intergenic Intergenic -253152 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 2329.33 chr8 114454431 114455259 + 7 NA Intergenic Intergenic -1017906 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 2790.67 chr5 59809741 59810564 + 7 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -41304 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1664 chr20 47621276 47621645 + 7 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 119573 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 2263.17 chr4 67746519 67747231 + 7 NA intron (NM_000406, intron 1 of 2) intron (NM_000406, intron 1 of 2) 9211 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 2129.83-2 chr2 75640249 75641024 + 7 NA Intergenic Intergenic -6147 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 1638.5 chr14 50777754 50778857 + 7 NA intron (NM_016350, intron 6 of 28) AluJb|SINE|Alu -43492 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 1957.17 chr3 85304117 85305077 + 7 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -81113 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 2652.33 chr7 40329346 40330180 + 7 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 194787 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 1091-2 chr6 43774512 43774945 + 7 NA intron (NM_003376, intron 2 of 7) intron (NM_003376, intron 2 of 7) 2760 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 2761 chr6 35341817 35342972 + 7 NA promoter-TSS (NM_001171819) promoter-TSS (NM_001171819) -164 NM_001171819 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 1301 chr1 27044482 27045030 + 7 NA Intergenic Intergenic -31906 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 TENT5B FAM46B terminal nucleotidyltransferase 5B protein-coding 1321.33 chr1 234114503 234115003 + 7 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -99458 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 1592 chr9 75265282 75265742 + 7 NA Intergenic Intergenic 176998 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 1470.17 chr4 64781490 64782156 + 7 NA Intergenic Intergenic 222677 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 2236.5 chr14 36605081 36605713 + 7 NA Intergenic MIR3|SINE|MIR -22783 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 2123.83-2 chr7 37916729 37917490 + 7 NA promoter-TSS (NM_003014) promoter-TSS (NM_003014) -292 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 2563.17 chr7 1086469 1087811 + 7 NA promoter-TSS (NM_001505) promoter-TSS (NM_001505) 22 NM_001505 2852 Hs.20961 NM_001505 ENSG00000164850 GPER1 CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER G protein-coupled estrogen receptor 1 protein-coding 2905.17 chr2 50491063 50492179 + 7 NA intron (NM_001330093, intron 15 of 22) intron (NM_001330093, intron 15 of 22) -143865 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1869.17 chr8 101632482 101633178 + 7 NA intron (NM_024915, intron 11 of 15) intron (NM_024915, intron 11 of 15) 140391 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1567.5-3 chr5 91929169 91929627 + 7 NA Intergenic Intergenic -546081 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 2513.5 chr2 35410202 35411084 + 7 NA Intergenic Intergenic -60762 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 2864.17 chr2 165953345 165954603 + 7 NA promoter-TSS (NM_024753) promoter-TSS (NM_024753) -198 NM_024753 79809 Hs.310672 NM_024753 ENSG00000123607 TTC21B ATD4|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1 tetratricopeptide repeat domain 21B protein-coding 1375.83 chr12 122054214 122054567 + 7 NA intron (NM_001024808, intron 4 of 5) intron (NM_001024808, intron 4 of 5) -8900 NR_135044 100506691 Hs.536336 NR_135044 ENSG00000256546 LOC100506691 - uncharacterized LOC100506691 ncRNA 1340.5 chr5 96613775 96614306 + 7 NA intron (NR_130776, intron 4 of 4) MIR|SINE|MIR -47997 NM_001190442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 2301.33 chr17 41548592 41549469 + 7 NA TTS (NR_038442) TTS (NR_038442) 5465 NR_038442 147093 Hs.680576 NR_038442 ENSG00000226629 LINC00974 - long intergenic non-protein coding RNA 974 ncRNA 1230 chr6 27772144 27772675 + 7 NA Intergenic Intergenic 10665 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 1665.83 chr1 156659844 156660612 + 7 NA TTS (NM_021948) TTS (NM_021948) 17179 NM_006617 10763 Hs.527971 NM_006617 ENSG00000132688 NES Nbla00170 nestin protein-coding 1735.17 chr2 105114242 105114993 + 7 NA Intergenic Intergenic -11673 NR_110227 101927492 Hs.469537 NR_110227 ENSG00000231851 UTAT33 - uncharacterized LOC101927492 ncRNA 970.833-2 chr1 222634405 222634846 + 7 NA intron (NM_198551, intron 6 of 27) intron (NM_198551, intron 6 of 27) -9678 NM_001300867 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 1419.17-2 chr2 70648041 70648343 + 7 NA Intergenic L1MD|LINE|L1 -94366 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 477.167-3 chr3 81581959 81582256 + 7 NA intron (NM_000158, intron 10 of 15) intron (NM_000158, intron 10 of 15) 179538 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 1743 chr1 205273173 205273878 + 7 NA TTS (NM_001242925) TTS (NM_001242925) 16328 NM_001331034 9911 Hs.6360 NM_014858 ENSG00000133069 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 1285.83 chr15 39757059 39757364 + 7 NA intron (NM_152597, intron 5 of 11) intron (NM_152597, intron 5 of 11) 25630 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 1941.67 chr6 138109167 138110009 + 7 NA Intergenic Intergenic -2169 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 2135 chr1 178299697 178300527 + 7 NA exon (NM_170692, exon 3 of 18) exon (NM_170692, exon 3 of 18) -41339 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 2417.5 chr7 121994667 121995569 + 7 NA intron (NM_001206839, intron 8 of 28) intron (NM_001206839, intron 8 of 28) 121957 NM_001369395 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 1895.83 chr12 121686541 121687426 + 7 NA Intergenic CpG -14339 NM_001363685 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 2449.83 chr2 42812941 42813755 + 7 NA Intergenic Intergenic -20765 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 2367.33 chr15 57560724 57561690 + 7 NA Intergenic Intergenic -30697 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 1459.33 chr12 8544193 8544829 + 7 NA Intergenic Intergenic -3606 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 2370.33 chr19 41706397 41707292 + 7 NA Intergenic Intergenic -1782 NM_004363 1048 Hs.709196 NM_004363 ENSG00000105388 CEACAM5 CD66e|CEA carcinoembryonic antigen related cell adhesion molecule 5 protein-coding 1888.5-2 chr7 70828892 70829761 + 7 NA Intergenic Intergenic -302818 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 1525.17 chr15 60520911 60521236 + 7 NA intron (NR_120339, intron 4 of 5) intron (NR_120339, intron 4 of 5) 41895 NR_120342 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 1644.83 chr14 76872410 76873382 + 7 NA Intergenic Intergenic 46488 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 1673.67 chr10 97037282 97037874 + 7 NA intron (NM_003061, intron 22 of 36) intron (NM_003061, intron 22 of 36) -65178 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 2089.5 chr18 59070541 59071251 + 7 NA Intergenic Intergenic 35217 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 1968.33 chr16 50024757 50025570 + 7 NA promoter-TSS (NM_001281789) promoter-TSS (NM_001281789) -43 NR_104042 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 1795.5 chr16 57590977 57591646 + 7 NA Intergenic Intergenic -28427 NM_001370451 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 1327.33 chr11 77619715 77620056 + 6.83333 NA intron (NM_001311201, intron 4 of 5) intron (NM_001311201, intron 4 of 5) 17909 NM_001311202 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 2233.17 chr10 123583310 123584263 + 6.83333 NA Intergenic Intergenic -82569 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 2079.67 chr16 84754225 84754784 + 6.83333 NA intron (NR_073578, intron 3 of 10) intron (NR_073578, intron 3 of 10) 54504 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 3209.33 chr7 1182892 1184225 + 6.83333 NA Intergenic AluJo|SINE|Alu 22773 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 1702 chr11 6705656 6706374 + 6.83333 NA Intergenic MER20|DNA|hAT-Charlie 15864 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 1277.83 chr12 52156689 52157167 + 6.83333 NA Intergenic Intergenic 35086 NM_001081492 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 1675-2 chr16 87778747 87779421 + 6.83333 NA promoter-TSS (NR_120309) promoter-TSS (NR_120309) 64 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 1894.33 chr2 96507906 96508621 + 6.83333 NA promoter-TSS (NR_104346) promoter-TSS (NR_104346) -154 NR_104346 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 1434.17 chr11 72446864 72447504 + 6.83333 NA Intergenic Intergenic -12500 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 2011.17 chr17 43694149 43695054 + 6.83333 NA Intergenic Intergenic -32679 NM_004527 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 1979.83 chr1 76153784 76155043 + 6.83333 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 79667 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 2338 chr17 80100889 80101565 + 6.83333 NA promoter-TSS (NM_001079803) promoter-TSS (NM_001079803) -354 NR_134848 2548 Hs.1437 NM_000152 ENSG00000171298 GAA LYAG glucosidase alpha, acid protein-coding 2096.5 chr2 72137411 72138059 + 6.83333 NA intron (NM_001277742, intron 1 of 4) intron (NM_001277742, intron 1 of 4) 10127 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 2130.67 chr11 37003327 37004226 + 6.83333 NA Intergenic Intergenic -405497 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 2195 chr3 100590323 100591525 + 6.83333 NA Intergenic MLT1C|LTR|ERVL-MaLR -18677 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 551.167-4 chr5 148741368 148741512 + 6.83333 NA Intergenic Intergenic -85153 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 1611.83 chr4 173318427 173319020 + 6.83333 NA intron (NM_017423, intron 11 of 11) intron (NM_017423, intron 11 of 11) 15046 NM_001130689 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 1440.83 chr1 153494680 153495444 + 6.83333 NA Intergenic Intergenic -34411 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 1443.5 chr22 26678661 26679446 + 6.83333 NA intron (NR_110543, intron 1 of 5) Charlie1b|DNA|hAT-Charlie 6210 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 2175.83 chr21 27700755 27701677 + 6.83333 NA Intergenic Intergenic -21163 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1371.83-2 chr8 139405521 139406193 + 6.83333 NA Intergenic Intergenic 297266 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1353.83 chr18 12659622 12660346 + 6.83333 NA intron (NM_147163, intron 1 of 6) intron (NM_147163, intron 1 of 6) 1245 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 2054.33 chr11 61187303 61188361 + 6.83333 NA Intergenic Intergenic -15683 NM_001079807 643834 Hs.601055 NM_001079807 ENSG00000229859 PGA3 - pepsinogen 3, group I (pepsinogen A) protein-coding 2280.33 chr10 47340453 47341506 + 6.83333 NA Intergenic Intergenic -7384 NM_002900 5949 Hs.591928 NM_002900 ENSG00000265203 RBP3 D10S64|D10S65|D10S66|IRBP|RBPI|RP66 retinol binding protein 3 protein-coding 1517.5-2 chr5 57220895 57221580 + 6.83333 NA intron (NM_022913, intron 3 of 11) intron (NM_022913, intron 3 of 11) 7163 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 1663.5-4 chr9 72592500 72593530 + 6.83333 NA intron (NM_138691, intron 2 of 23) intron (NM_138691, intron 2 of 23) 71214 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 1259.33 chr17 40417897 40418404 + 6.83333 NA promoter-TSS (NM_001067) promoter-TSS (NM_001067) -254 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A DNA topoisomerase II alpha protein-coding 1975.83 chr6 125995517 125996420 + 6.83333 NA non-coding (NR_146804, exon 3 of 17) non-coding (NR_146804, exon 3 of 17) 9428 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 1594.83-2 chr9 97921989 97922829 + 6.83333 NA intron (NM_001330725, intron 1 of 5) CpG 161 NM_016481 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 2276.17 chr3 194315100 194316154 + 6.83333 NA Intergenic CpG -2823 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 1550.33 chr16 4253881 4254817 + 6.83333 NA promoter-TSS (NR_039999) promoter-TSS (NR_039999) -560 NR_039999 100507501 Hs.632979 NR_039999 LINC01569 - long intergenic non-protein coding RNA 1569 ncRNA 1242.17 chr12 118377850 118378306 + 6.83333 NA intron (NM_022491, intron 1 of 11) intron (NM_022491, intron 1 of 11) 1523 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 2672.17 chr20 49928345 49929689 + 6.83333 NA TTS (NR_134564) TTS (NR_134564) -7380 NM_018683 55905 Hs.144949 NM_018683 ENSG00000124226 RNF114 PSORS12|ZNF313 ring finger protein 114 protein-coding 1136.67 chr15 94119669 94120572 + 6.83333 NA Intergenic Intergenic -12182 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 1576.17 chr8 138700110 138700842 + 6.83333 NA intron (NM_152888, intron 31 of 64) intron (NM_152888, intron 31 of 64) -202746 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1799 chr4 85747863 85748410 + 6.83333 NA intron (NM_001025616, intron 3 of 9) intron (NM_001025616, intron 3 of 9) 25668 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 1853.17 chr1 26104719 26105409 + 6.83333 NA Intergenic Intergenic -6101 NM_001243532 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 1486-2 chr9 128295262 128295769 + 6.83333 NA Intergenic Intergenic 19369 NM_001318089 375757 Hs.259594 NM_001040011 ENSG00000175854 SWI5 C9orf119|SAE3 SWI5 homologous recombination repair protein protein-coding 2038 chr4 55345979 55346704 + 6.83333 NA promoter-TSS (NM_024592) promoter-TSS (NM_024592) 99 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 1036.33-2 chr14 74111315 74111988 + 6.83333 NA intron (NM_001024674, intron 5 of 5) (TATT)n|Simple_repeat|Simple_repeat 26698 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 1386.33 chr5 21817504 21818019 + 6.83333 NA intron (NM_004061, intron 8 of 14) intron (NM_004061, intron 8 of 14) -66693 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 1505 chr7 37833382 37834012 + 6.83333 NA Intergenic Intergenic -14900 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 1362.17-2 chr2 98649201 98650148 + 6.83333 NA intron (NM_001160154, intron 5 of 12) intron (NM_001160154, intron 5 of 12) 13799 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 2206.17 chr10 86585341 86586025 + 6.83333 NA Intergenic Intergenic -63891 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 1743-2 chr2 48420703 48421385 + 6.83333 NA Intergenic Intergenic -19722 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 819 chr11 111565118 111565603 + 6.83333 NA Intergenic Intergenic 24852 NM_001258390 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 2240.83 chr2 26961397 26962507 + 6.83333 NA Intergenic Intergenic -8685 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 2243.83-2 chr8 133885953 133886700 + 6.83333 NA promoter-TSS (NR_125424) promoter-TSS (NR_125424) -170 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1395.67 chr3 16048593 16049086 + 6.83333 NA Intergenic Intergenic -125841 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 2042.67 chr10 96374823 96375540 + 6.83333 NA intron (NM_012465, intron 18 of 20) intron (NM_012465, intron 18 of 20) -15816 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 1207 chr1 54996534 54996823 + 6.83333 NA Intergenic Intergenic -2255 NM_057176 7809 Hs.151291 NM_057176 ENSG00000162399 BSND BART|DFNB73 barttin CLCNK type accessory beta subunit protein-coding 1078.67-4 chr5 66307530 66308102 + 6.83333 NA Intergenic Intergenic -98370 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 2594.17 chr6 40308397 40309309 + 6.83333 NA Intergenic Intergenic 47153 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 1211.33 chr12 48189424 48190099 + 6.83333 NA Intergenic Intergenic 6117 NM_001013635 387856 Hs.251699 NM_001013635 ENSG00000177875 CCDC184 C12orf68 coiled-coil domain containing 184 protein-coding 1358.5 chr14 63276529 63277405 + 6.83333 NA intron (NM_020663, intron 2 of 4) intron (NM_020663, intron 2 of 4) 41968 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 1353.67-2 chr9 122099267 122099919 + 6.83333 NA Intergenic L2b|LINE|L2 -5987 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 1813.83 chr21 33196632 33197460 + 6.83333 NA Intergenic Intergenic -26810 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 1922 chr1 63615582 63616317 + 6.83333 NA intron (NM_001172819, intron 1 of 10) intron (NM_001172819, intron 1 of 10) -7267 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 1693.83 chr5 34486088 34486653 + 6.83333 NA Intergenic Intergenic -169958 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 1684.67 chr1 108125462 108126306 + 6.83333 NA Intergenic Intergenic 66951 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 1279.17-2 chr6 57268113 57268670 + 6.83333 NA Intergenic Intergenic -5045 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 1995.5 chr1 23403864 23404633 + 6.83333 NA intron (NM_003196, intron 5 of 10).2 intron (NM_003196, intron 5 of 10).2 20500 NM_003196 6920 Hs.446354 NM_003196 ENSG00000204219 TCEA3 TFIIS|TFIIS.H transcription elongation factor A3 protein-coding 2879.67 chr20 3819941 3821025 + 6.83333 NA promoter-TSS (NM_001204447) promoter-TSS (NM_001204447) -41 NM_001204446 55317 Hs.104806 NM_018347 ENSG00000125843 AP5S1 C20orf29 adaptor related protein complex 5 subunit sigma 1 protein-coding 2008.33 chr1 220776153 220777338 + 6.83333 NA intron (NM_001331042, intron 4 of 4) intron (NM_001331042, intron 4 of 4) -10168 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 1206.33-3 chr4 37602968 37603456 + 6.83333 NA intron (NM_001085399, intron 6 of 6) intron (NM_001085399, intron 6 of 6) 18979 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 1645.5 chr14 23562729 23563354 + 6.83333 NA intron (NM_001354675, intron 11 of 18) intron (NM_001354675, intron 11 of 18) 1944 NR_110555 102724814 Hs.569375 NR_110555 ENSG00000258727 LOC102724814 - uncharacterized LOC102724814 ncRNA 1639.83-2 chr7 12458226 12459142 + 6.83333 NA Intergenic Intergenic -37745 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 2817.17 chr1 59976411 59977226 + 6.83333 NA Intergenic Intergenic -50020 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 991.833 chr11 66694635 66695072 + 6.83333 NA intron (NM_006946, intron 20 of 36) LTR41C|LTR|ERVL -16966 NM_031492 83759 Hs.618713 NM_031492 ENSG00000173914 RBM4B RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B RNA binding motif protein 4B protein-coding 1085.5 chr17 68466122 68466579 + 6.83333 NA intron (NM_001278433, intron 1 of 10) intron (NM_001278433, intron 1 of 10) -8826 NM_001320772 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 3825.66 chr19 39411720 39413231 + 6.83333 NA promoter-TSS (NM_001351693) promoter-TSS (NM_001351693) -194 NM_022835 64857 Hs.631574 NM_022835 ENSG00000090924 PLEKHG2 ARHGEF42|CLG|CTB-60E11.4|LDAMD pleckstrin homology and RhoGEF domain containing G2 protein-coding 2894.83 chr1 86703958 86705317 + 6.83333 NA promoter-TSS (NR_135837) promoter-TSS (NR_135837) 61 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 2426.83 chr2 98412587 98413427 + 6.83333 NA Intergenic MER91B|DNA|hAT-Tip100 -31580 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 2080.67-2 chr2 225670102 225670636 + 6.83333 NA intron (NM_001371273, intron 7 of 7) L3b|LINE|CR1 269483 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 2427.5 chr10 116787724 116788702 + 6.83333 NA intron (NM_001330164, intron 2 of 12) CpG 39355 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 2232.17 chr7 26681564 26682378 + 6.83333 NA intron (NM_003930, intron 11 of 12) intron (NM_003930, intron 11 of 12) 44100 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 2457.83 chr12 15275489 15276605 + 6.83333 NA Intergenic Intergenic -46461 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 2156.17 chr10 84540188 84540959 + 6.83333 NA Intergenic Intergenic 115404 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 2211.5 chr14 70073639 70074601 + 6.83333 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) 6097 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 1749.33-2 chr6 56358866 56359485 + 6.83333 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 34953 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 2274.17 chr2 36663825 36664834 + 6.83333 NA Intergenic L2a|LINE|L2 -32361 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 2408.17 chr7 7541355 7542057 + 6.83333 NA Intergenic Intergenic -5833 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 1483.17 chr16 47258706 47259095 + 6.83333 NA intron (NM_030790, intron 11 of 17) intron (NM_030790, intron 11 of 17) 114832 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 1935.17 chr2 36779757 36780679 + 6.83333 NA intron (NM_001177970, intron 9 of 13) intron (NM_001177970, intron 9 of 13) 83511 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 1369-2 chr17 17972437 17972887 + 6.83333 NA promoter-TSS (NM_001288789) promoter-TSS (NM_001288789) -151 NM_001130090 83450 Hs.579264 NM_031294 ENSG00000171962 DRC3 CFAP134|LRRC48 dynein regulatory complex subunit 3 protein-coding 1292.33-2 chr5 150560312 150561386 + 6.83333 NA Intergenic L1MC4|LINE|L1 -40227 NM_001166208 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 2923.67 chr20 52242233 52243451 + 6.83333 NA Intergenic Intergenic -50857 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 1580.67 chr1 99707523 99708315 + 6.83333 NA 3' UTR (NM_001361041, exon 17 of 17) 3' UTR (NM_001361041, exon 17 of 17) 5034 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 997 chr4 113547226 113547783 + 6.83333 NA intron (NM_001321578, intron 5 of 17) intron (NM_001321578, intron 5 of 17) 214234 NM_001321567 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 2730 chr6 56708523 56709577 + 6.83333 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -66161 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 1380.33 chrX 53312840 53313185 + 6.83333 NA intron (NM_001111125, intron 1 of 14) intron (NM_001111125, intron 1 of 14) 8338 NM_001111125 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 1933.83-2 chr2 231905681 231906488 + 6.83333 NA Intergenic MER5A|DNA|hAT-Charlie -13786 NR_031717 100302126 NR_031717 ENSG00000222246 MIR1471 MIRN1471|hsa-mir-1471 microRNA 1471 ncRNA 1524.67-2 chr6 41368816 41369280 + 6.83333 NA Intergenic Intergenic 33440 NM_004828 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 1813 chr20 39264268 39265082 + 6.83333 NA Intergenic Intergenic -39927 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 1303 chr4 87235938 87236506 + 6.83333 NA Intergenic AluSg|SINE|Alu -15604 NM_001292006 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 2072.5 chr2 209333935 209334867 + 6.83333 NA Intergenic Intergenic -89646 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 2826.33 chr1 78839467 78840449 + 6.83333 NA Intergenic Intergenic 166772 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 1680.67 chr14 34324190 34324962 + 6.83333 NA Intergenic Intergenic 137664 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 2000.67 chr16 81366291 81366873 + 6.83333 NA intron (NM_022041, intron 9 of 10) intron (NM_022041, intron 9 of 10) -18436 NR_039871 100616150 NR_039871 ENSG00000284473 MIR4720 - microRNA 4720 ncRNA 2161.33 chr7 74206140 74207072 + 6.66667 NA Intergenic Intergenic -3400 NM_032464 7462 Hs.741249 NM_014146 ENSG00000086730 LAT2 HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5 linker for activation of T cells family member 2 protein-coding 2098.17 chr15 98428150 98428871 + 6.66667 NA Intergenic CpG -7512 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 1560.17 chr3 12720198 12720647 + 6.66667 NA Intergenic L1ME3B|LINE|L1 38837 NM_001284407 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 740.334-2 chrM 6177 6752 + 6.66667 NA TTS (NR_162149).2 TTS (NR_162149).2 1050 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 1438.5-2 chr7 33459379 33459770 + 6.66667 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 330010 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 1747 chr1 212665346 212665911 + 6.66667 NA Intergenic Intergenic 34212 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 2240.83-2 chr6 56292543 56293135 + 6.66667 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) -45259 NM_030820 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 2599.5 chr8 137843029 137843864 + 6.66667 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 240099 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 4232.5 chr11 76919030 76920512 + 6.66667 NA intron (NM_001300953, intron 1 of 9) intron (NM_001300953, intron 1 of 9) 58853 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 1497-2 chr7 30548534 30549175 + 6.66667 NA non-coding (NR_038889, exon 7 of 7) non-coding (NR_038889, exon 7 of 7) 28925 NR_038889 401320 Hs.561708 NR_038889 GARS-DT - GARS divergent transcript ncRNA 1888.5 chr5 4868015 4869062 + 6.66667 NA Intergenic Intergenic 95057 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 1172-2 chr7 97064935 97065420 + 6.66667 NA Intergenic Intergenic -40346 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 2468.17 chr17 30104291 30104976 + 6.66667 NA intron (NM_198529, intron 22 of 22) intron (NM_198529, intron 22 of 22) -12174 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 1743.83 chr15 60916681 60917490 + 6.66667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 235516 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 2100.5-2 chr8 129535588 129536638 + 6.66667 NA intron (NR_130917, intron 1 of 3) L2c|LINE|L2 38905 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 2482.83 chr19 41449203 41449908 + 6.66667 NA Intergenic Intergenic 6399 NM_001130514 100170765 Hs.649452 NM_001130514 ENSG00000204978 ERICH4 C19orf69 glutamate rich 4 protein-coding 1592.83 chr10 63629069 63630198 + 6.66667 NA Intergenic Intergenic -107743 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 2285.17 chr22 28855362 28856033 + 6.66667 NA Intergenic MIR3|SINE|MIR -27875 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 2109.83 chr5 139787379 139788110 + 6.66667 NA Intergenic CpG -8064 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 2913.67 chr19 46080626 46082821 + 6.66667 NA Intergenic Intergenic -4094 NR_163177 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 1370-2 chrX 84729637 84730172 + 6.66667 NA Intergenic L1PA15-16|LINE|L1 -204247 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 1655.67 chr4 39469147 39469903 + 6.66667 NA intron (NM_194451, intron 7 of 9) intron (NM_194451, intron 7 of 9) 10469 NM_006859 11019 Hs.550502 NM_006859 ENSG00000121897 LIAS HGCLAS|HUSSY-01|LAS|LIP1|LS|PDHLD lipoic acid synthetase protein-coding 1973.33 chr1 208245194 208245899 + 6.66667 NA Intergenic GA-rich|Low_complexity|Low_complexity -1162 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 1735.5-2 chr15 62742144 62743219 + 6.66667 NA intron (NM_015059, intron 29 of 55) intron (NM_015059, intron 29 of 55) -81276 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 2220.17 chr11 34585907 34586835 + 6.66667 NA Intergenic Intergenic -34722 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 939.333 chr16 53510228 53510886 + 6.66667 NA Intergenic Intergenic -7253 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 2135.5 chr14 72904903 72905608 + 6.66667 NA Intergenic Intergenic -11139 NM_001280542 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 1744.5 chr17 78112379 78113149 + 6.66667 NA promoter-TSS (NR_040071) promoter-TSS (NR_040071) -965 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 1557.83 chr11 6811841 6812626 + 6.66667 NA Intergenic L1PA16|LINE|L1 -16325 NM_003696 8590 Hs.652252 NM_003696 ENSG00000184933 OR6A2 I7|OR11-55|OR6A1|OR6A2P olfactory receptor family 6 subfamily A member 2 protein-coding 2052.5 chr2 11688235 11689360 + 6.66667 NA intron (NM_001349207, intron 1 of 20) intron (NM_001349207, intron 1 of 20) 11253 NM_001349208 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 2597.5 chr8 134690969 134691909 + 6.66667 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 5116 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 1482.33 chr8 8670332 8670996 + 6.66667 NA Intergenic Intergenic -31273 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 1825.33 chr10 73159072 73159634 + 6.66667 NA intron (NM_007265, intron 3 of 13) intron (NM_007265, intron 3 of 13) 8655 NM_007265 11319 Hs.631822 NM_007265 ENSG00000122882 ECD GCR2|HSGT1|SGT1 ecdysoneless cell cycle regulator protein-coding 2115.5 chr1 110196646 110197735 + 6.66667 NA intron (NM_001010898, intron 10 of 11) intron (NM_001010898, intron 10 of 11) 12797 NR_046546 100873974 Hs.130515 NR_046546 LINC02586 KCNC4-AS1 long intergenic non-protein coding RNA 2586 ncRNA 2146.5 chr1 245042489 245043357 + 6.66667 NA intron (NM_032328, intron 3 of 7) intron (NM_032328, intron 3 of 7) -72054 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 1336.5 chr14 75488732 75489226 + 6.66667 NA Intergenic Intergenic -33490 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 1436.33 chr1 53181923 53182522 + 6.66667 NA Intergenic Intergenic -14602 NM_000098 1376 Hs.713535 NM_000098 ENSG00000157184 CPT2 CPT1|CPTASE|IIAE4 carnitine palmitoyltransferase 2 protein-coding 1625.83 chr9 77456613 77457304 + 6.66667 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 9309 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 1348.33-2 chr18 61551300 61551927 + 6.66667 NA intron (NM_031891, intron 11 of 11) intron (NM_031891, intron 11 of 11) -196563 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 1450.67-2 chr5 141524588 141525299 + 6.66667 NA intron (NM_005219, intron 26 of 27) intron (NM_005219, intron 26 of 27) -33368 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 1204.5 chr14 67285673 67286546 + 6.66667 NA intron (NM_001256550, intron 3 of 14) L3b|LINE|CR1 44674 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 2036 chr16 85610202 85611261 + 6.66667 NA promoter-TSS (NM_001134473) promoter-TSS (NM_001134473) -678 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 1846.67 chr15 78618345 78618879 + 6.66667 NA intron (NR_046313, intron 3 of 7) intron (NR_046313, intron 3 of 7) 2384 NM_001166694 1136 Hs.89605 NM_000743 ENSG00000080644 CHRNA3 LNCR2|NACHRA3|PAOD2 cholinergic receptor nicotinic alpha 3 subunit protein-coding 1623.33-2 chr5 73902160 73903003 + 6.66667 NA intron (NM_001177693, intron 31 of 35) intron (NM_001177693, intron 31 of 35) 89035 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 2948.83 chr4 30714081 30715698 + 6.66667 NA Intergenic Intergenic -5480 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1895.5 chr3 63350513 63351400 + 6.66667 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 72648 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 2991.5 chr10 60433790 60435426 + 6.66667 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -44733 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 1862.83 chr5 82225491 82226094 + 6.66667 NA intron (NM_031482, intron 5 of 7) intron (NM_031482, intron 5 of 7) 52562 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 1809.5 chr11 19553662 19554392 + 6.66667 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -21283 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 2382 chr14 51978692 51979742 + 6.66667 NA Intergenic Intergenic -10329 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 1741 chr10 77641713 77642310 + 6.66667 NA Intergenic Intergenic -4203 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 1593.67 chr6 17584327 17584781 + 6.66667 NA Intergenic Intergenic -15748 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 785.334 chr3 99808358 99808834 + 6.66667 NA Intergenic MLT1G3|LTR|ERVL-MaLR -9266 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 637.167-2 chr19 45817208 45817387 + 6.66667 NA intron (NM_004819, intron 23 of 26) intron (NM_004819, intron 23 of 26) -1989 NM_030785 81492 Hs.146544 NM_030785 ENSG00000104941 RSPH6A RSHL1|RSP4|RSP6|RSPH4B radial spoke head 6 homolog A protein-coding 2243 chr15 68252727 68253367 + 6.66667 NA Intergenic L1ME3F|LINE|L1 -23319 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 1341.67 chr3 134794799 134795211 + 6.66667 NA promoter-TSS (NM_004441) promoter-TSS (NM_004441) -255 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 1646.67 chr2 42858683 42859297 + 6.66667 NA Intergenic MER5A|DNA|hAT-Charlie -66407 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 1251 chr18 22704274 22704946 + 6.66667 NA Intergenic Intergenic 82227 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 1124.33-2 chr5 16160580 16160979 + 6.66667 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 19012 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 2117.83 chr8 122572257 122572905 + 6.66667 NA Intergenic Intergenic -3937 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1773.17 chr8 125728874 125729661 + 6.66667 NA Intergenic MIR3|SINE|MIR 221930 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 2554.5 chr7 11343570 11345227 + 6.66667 NA Intergenic Intergenic 370526 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 1479.33-2 chr5 55146258 55147125 + 6.66667 NA exon (NM_001170402, exon 3 of 12) exon (NM_001170402, exon 3 of 12) -13480 NM_001306197 493869 Hs.289044 NM_001008397 ENSG00000164294 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 1648.17 chr2 18378028 18378890 + 6.66667 NA Intergenic Intergenic 182194 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 1355.67 chr2 11692843 11693638 + 6.66667 NA intron (NM_001349207, intron 1 of 20) intron (NM_001349207, intron 1 of 20) 15696 NM_001349208 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 1637-4 chr9 100714427 100715111 + 6.66667 NA Intergenic Intergenic 136690 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 2722 chr1 74771695 74773125 + 6.66667 NA Intergenic Intergenic -39002 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 2378.33 chr3 89098795 89100082 + 6.66667 NA Intergenic Intergenic -8183 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1678.5-2 chr8 142718026 142718715 + 6.66667 NA intron (NR_038925, intron 1 of 2) LTR50|LTR|ERVL 8603 NR_038925 100288181 Hs.716823 NR_038925 ENSG00000253741 LNCOC1 Lnc-OC1 lncRNA associated with ovarian cancer 1 ncRNA 2371.83 chr7 50092081 50092936 + 6.66667 NA intron (NM_001159878, intron 1 of 7) intron (NM_001159878, intron 1 of 7) 738 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 1683 chr8 48925449 48926351 + 6.66667 NA Intergenic Intergenic -4471 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 1699 chr3 188956635 188957312 + 6.66667 NA Intergenic Intergenic -9334 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 1845.67 chr21 25801396 25802133 + 6.66667 NA Intergenic L1MEi|LINE|L1 -66110 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 2138.17 chr19 6459846 6460904 + 6.66667 NA promoter-TSS (NM_024103) promoter-TSS (NM_024103) -583 NM_024103 79085 Hs.356231 NM_024103 ENSG00000125648 SLC25A23 APC2|MCSC2|SCaMC-3 solute carrier family 25 member 23 protein-coding 1481.67 chr17 42577546 42578832 + 6.66667 NA promoter-TSS (NM_001256016) promoter-TSS (NM_001256016) -358 NM_001256015 29893 Hs.383019 NM_013290 ENSG00000131470 PSMC3IP GT198|HOP2|HUMGT198A|ODG3|TBPIP PSMC3 interacting protein protein-coding 489.667 chr2 105238040 105238197 + 6.66667 NA Intergenic Intergenic -3625 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 1682 chr6 85537041 85537600 + 6.66667 NA intron (NM_001350541, intron 15 of 26) intron (NM_001350541, intron 15 of 26) 56538 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 1331.33-2 chr7 77246997 77247585 + 6.66667 NA intron (NM_020879, intron 4 of 18) intron (NM_020879, intron 4 of 18) -47472 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 1177.83-2 chr14 23068577 23069296 + 6.66667 NA intron (NM_001164816, intron 2 of 11) intron (NM_001164816, intron 2 of 11) 2633 NM_001164817 22985 Hs.124490 NM_014977 ENSG00000100813 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 1680.5 chr1 110495940 110496598 + 6.66667 NA Intergenic Intergenic -6011 NR_108042 440602 Hs.708945 NR_108042 ENSG00000235407 CYMP-AS1 - CYMP antisense RNA 1 ncRNA 1555 chr9 68584208 68585506 + 6.5 NA Intergenic Intergenic -38255 NR_109769 101927015 Hs.406454 NR_109769 ENSG00000234506 LINC01506 - long intergenic non-protein coding RNA 1506 ncRNA 2971.33 chr14 19877627 19878743 + 6.5 NA TTS (NM_001005501) TTS (NM_001005501) 1917 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 1378.83 chr2 42095742 42096482 + 6.5 NA Intergenic Intergenic 48091 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 3036 chr1 110338047 110339429 + 6.5 NA promoter-TSS (NM_001201545) promoter-TSS (NM_001201545) 433 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 1178-2 chr5 50962971 50963364 + 6.5 NA Intergenic Intergenic 7020 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 2499.17 chr14 66070507 66071577 + 6.5 NA Intergenic Intergenic -415329 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 1308.33 chr13 42110563 42111206 + 6.5 NA intron (NM_178009, intron 1 of 29) intron (NM_178009, intron 1 of 29) -27158 NR_123715 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 2348.5 chr20 19691971 19693213 + 6.5 NA intron (NM_020689, intron 12 of 16) L1ME2|LINE|L1 -193929 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 1848.83 chr7 7680982 7681867 + 6.5 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) 37183 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 1521.33 chr14 67933951 67934559 + 6.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 110663 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 1477.5 chr11 11798738 11799245 + 6.5 NA Intergenic Intergenic -15769 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 1707.17 chr9 84173044 84173522 + 6.5 NA Intergenic Intergenic 109840 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 1653.67 chr2 68441705 68442368 + 6.5 NA Intergenic MIRb|SINE|MIR 25258 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 2983.83 chr8 140464152 140465585 + 6.5 NA Intergenic CpG -6289 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 1042.33 chr6 158972558 158973109 + 6.5 NA TTS (NM_031924) TTS (NM_031924) 27354 NM_001346418 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 1678 chr12 108511768 108512406 + 6.5 NA Intergenic Intergenic -3190 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 2653.67 chr11 78644853 78645825 + 6.5 NA Intergenic Intergenic -70475 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 1854.83 chr17 72118543 72119415 + 6.5 NA intron (NR_103737, intron 1 of 3) intron (NR_103737, intron 1 of 3) 1814 NR_103737 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 1557.5 chr15 95291711 95292484 + 6.5 NA intron (NR_034095, intron 1 of 3) intron (NR_034095, intron 1 of 3) 35003 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 3153.67 chr10 15902129 15903258 + 6.5 NA Intergenic Intergenic -42160 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 2139.17 chr1 175154599 175155425 + 6.5 NA Intergenic Intergenic 37764 NM_014656 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 2175.17 chr8 125911503 125912543 + 6.5 NA Intergenic Intergenic 39174 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1650.67-2 chr19 14556468 14557096 + 6.5 NA intron (NM_001321170, intron 2 of 13) intron (NM_001321170, intron 2 of 13) 15284 NM_004146 4713 Hs.532853 NM_004146 ENSG00000099795 NDUFB7 B18|CI-B18 NADH:ubiquinone oxidoreductase subunit B7 protein-coding 2030.17 chr12 10749743 10750953 + 6.5 NA intron (NR_120463, intron 1 of 6) intron (NR_120463, intron 1 of 6) 114 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 2927.5-2 chr7 51160835 51161786 + 6.5 NA intron (NM_015198, intron 5 of 12) intron (NM_015198, intron 5 of 12) 155499 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 1808.17 chr2 97709610 97710115 + 6.5 NA Intergenic Intergenic -3706 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 1344.33 chr7 99990850 99991645 + 6.5 NA Intergenic AluSq|SINE|Alu -5828 NR_159960 105375423 NR_159959 LOC105375423 - uncharacterized LOC105375423 ncRNA 1525.5 chr2 75677087 75677722 + 6.5 NA intron (NM_001201334, intron 12 of 16) intron (NM_001201334, intron 12 of 16) 30621 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 2785.67 chr6 47787524 47788699 + 6.5 NA intron (NR_033806, intron 1 of 6) intron (NR_033806, intron 1 of 6) 1043 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 629.333-2 chr4 47383558 47384107 + 6.5 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 79870 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 2154.17 chr11 64688085 64688921 + 6.5 NA intron (NM_138732, intron 4 of 19) intron (NM_138732, intron 4 of 19) 34685 NM_015080 9379 Hs.372938 NM_015080 ENSG00000110076 NRXN2 - neurexin 2 protein-coding 1109.17 chr20 8759303 8760390 + 6.5 NA intron (NM_182734, intron 24 of 32) intron (NM_182734, intron 24 of 32) -71339 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 1098.83 chr17 63405577 63406366 + 6.5 NA intron (NM_025185, intron 19 of 25) intron (NM_025185, intron 19 of 25) 34296 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 1164.17-2 chr22 37266787 37267496 + 6.5 NA Intergenic Intergenic -15367 NM_001318024 27128 Hs.170944 NM_013385 ENSG00000100055 CYTH4 CYT4|DJ63G5.1|PSCD4|cytohesin-4 cytohesin 4 protein-coding 2944.5 chr16 78099267 78100338 + 6.5 NA exon (NM_016373, exon 1 of 9) exon (NM_016373, exon 1 of 9) 148 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 2177.67 chr7 38215460 38216187 + 6.5 NA intron (NM_001363347, intron 5 of 8) intron (NM_001363347, intron 5 of 8) 37578 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 1733.17-2 chr5 64612342 64612992 + 6.5 NA TTS (NM_001029875) TTS (NM_001029875) 37017 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 1452 chr2 162123778 162124423 + 6.5 NA intron (NR_110255, intron 1 of 3) intron (NR_110255, intron 1 of 3) 9659 NR_110255 101929532 Hs.639883 NR_110255 ENSG00000236841 LOC101929532 - uncharacterized LOC101929532 ncRNA 885.666 chr18 36757259 36757544 + 6.5 NA intron (NM_001281739, intron 21 of 23) intron (NM_001281739, intron 21 of 23) 71601 NM_015476 25941 Hs.436636 NM_015476 ENSG00000134779 TPGS2 C18orf10|HMFN0601|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 1580 chr8 56557601 56558849 + 6.5 NA intron (NR_038236, intron 1 of 2) intron (NR_038236, intron 1 of 2) 1598 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 1986.5-2 chr12 42129365 42130363 + 6.5 NA intron (NM_173601, intron 1 of 7) intron (NM_173601, intron 1 of 7) 15010 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 1755.5 chr4 76179642 76180424 + 6.5 NA intron (NM_005506, intron 3 of 11) intron (NM_005506, intron 3 of 11) -31518 NR_103781 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 1424 chr3 47475948 47476321 + 6.5 NA promoter-TSS (NM_001320044) promoter-TSS (NM_001320044) -193 NM_012235 22937 Hs.531789 NM_012235 ENSG00000114650 SCAP - SREBF chaperone protein-coding 1804.5 chr8 124440059 124440965 + 6.5 NA Intergenic Intergenic -10308 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 1714.17 chr21 25607958 25608561 + 6.5 NA promoter-TSS (NM_017446) promoter-TSS (NM_017446) -770 NM_080794 54148 Hs.420696 NM_017446 ENSG00000154719 MRPL39 C21orf92|L39mt|MRP-L5|MRPL5|MSTP003|PRED22|PRED66|RPML5 mitochondrial ribosomal protein L39 protein-coding 2390.33 chr2 42494459 42495635 + 6.5 NA intron (NM_001282755, intron 1 of 17) intron (NM_001282755, intron 1 of 17) 478 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 1920.17 chr5 53095776 53096555 + 6.5 NA 3' UTR (NM_176806, exon 7 of 7) 3' UTR (NM_176806, exon 7 of 7) 13592 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 2082.67 chr1 170929183 170930621 + 6.5 NA Intergenic Intergenic -5569 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 569.5-4 chr5 34474581 34474865 + 6.5 NA Intergenic Intergenic -181605 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 1044.17 chr7 26200675 26201126 + 6.5 NA promoter-TSS (NM_007276) promoter-TSS (NM_007276) -154 NM_031243 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 1559.5 chr17 64321015 64321499 + 6.5 NA 3' UTR (NM_000442, exon 16 of 16) 3' UTR (NM_000442, exon 16 of 16) -57997 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 1574.67-3 chr17 29369925 29370274 + 6.5 NA Intergenic Intergenic -20563 NR_039749 100616122 NR_039749 ENSG00000284162 MIR4523 - microRNA 4523 ncRNA 2493.66 chr19 47035627 47036542 + 6.5 NA exon (NM_002517, exon 6 of 12) exon (NM_002517, exon 6 of 12) 767 NM_001321086 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 1729 chr20 22691603 22692129 + 6.5 NA Intergenic Intergenic -6522 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 1812.5 chr8 81277550 81278146 + 6.5 NA Intergenic Intergenic -2688 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 2385 chr14 53539243 53539956 + 6.5 NA Intergenic Intergenic 386245 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 1187.33 chr2 173210628 173211167 + 6.5 NA intron (NR_033882, intron 5 of 7) intron (NR_033882, intron 5 of 7) 71139 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 1752.33 chr8 103372761 103373806 + 6.5 NA intron (NM_001256099, intron 1 of 3) intron (NM_001256099, intron 1 of 3) 776 NM_001256099 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 1546.33 chr18 9575214 9575898 + 6.5 NA intron (NR_052003, intron 9 of 19) intron (NR_052003, intron 9 of 19) 39003 NR_052003 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 1561 chr9 129737478 129738209 + 6.5 NA TTS (NM_004878) TTS (NM_004878) 15199 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 1534.17-2 chr20 35447029 35447781 + 6.5 NA intron (NM_001319138, intron 1 of 3) intron (NM_001319138, intron 1 of 3) 6692 NR_031620 100302125 NR_031620 ENSG00000221763 MIR1289-1 MIRN1289-1|hsa-mir-1289-1 microRNA 1289-1 ncRNA 1427.5 chr1 203269024 203269566 + 6.5 NA Intergenic Intergenic -17857 NR_117097 100506775 Hs.443859 NR_117097 ENSG00000231507 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 1378.33 chr9 85258981 85259302 + 6.5 NA Intergenic Intergenic 482888 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 2414.33 chr6 42166096 42167063 + 6.5 NA intron (NM_001319061, intron 2 of 5) intron (NM_001319061, intron 2 of 5) 11173 NM_001370581 114841037 Hs.92858 NM_001370581 LOC114841037 - Uncharacterized protein 114841037 protein-coding 1797.83 chr20 37191983 37192691 + 6.5 NA intron (NM_001324306, intron 2 of 15) L2b|LINE|L2 -12789 NM_152503 140699 Hs.349125 NM_152503 ENSG00000101353 MROH8 C20orf131|C20orf132 maestro heat like repeat family member 8 protein-coding 1635.17 chr10 17847256 17848165 + 6.5 NA intron (NM_002438, intron 6 of 29) intron (NM_002438, intron 6 of 29) 2603 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 2248.83 chr14 20613141 20614402 + 6.5 NA Intergenic Intergenic -22948 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 1503.33 chr15 101641147 101641924 + 6.5 NA TTS (NM_078474) TTS (NM_078474) 10846 NM_078474 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 1497 chr10 84026963 84027562 + 6.5 NA Intergenic L1ME1|LINE|L1 -112247 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 2260.33 chr8 125702308 125703137 + 6.5 NA Intergenic Intergenic 248475 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 2683.83 chr7 12686261 12687594 + 6.5 NA promoter-TSS (NM_001037164) promoter-TSS (NM_001037164) 100 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 876.5 chr12 102095627 102095998 + 6.5 NA intron (NM_024057, intron 5 of 9) intron (NM_024057, intron 5 of 9) 24302 NM_024057 79023 Hs.444276 NM_024057 ENSG00000075188 NUP37 MCPH24|p37 nucleoporin 37 protein-coding 1893.67 chr1 107142006 107142734 + 6.5 NA intron (NM_001330665, intron 1 of 6) intron (NM_001330665, intron 1 of 6) 1331 NM_001330665 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 1889.5-3 chr6 134882440 134883218 + 6.5 NA Intergenic Intergenic 67272 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 2448.83 chr10 116444300 116444962 + 6.5 NA intron (NM_001011709, intron 4 of 11) intron (NM_001011709, intron 4 of 11) 16784 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 1813.33 chr21 26715445 26716402 + 6.5 NA Intergenic Intergenic 129486 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 1534.83-2 chr8 145026637 145027353 + 6.5 NA Intergenic HERVK-int|LTR|ERVK -24096 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 1333 chr15 89057278 89057954 + 6.5 NA Intergenic Intergenic -30840 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 1195.33 chr1 157196830 157197266 + 6.5 NA Intergenic Intergenic -58457 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 1900.5 chr7 41942928 41943461 + 6.5 NA Intergenic Intergenic -240104 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 2052 chr6 73674683 73675888 + 6.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -20800 NM_001159588 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 2186.17 chr11 82927223 82927909 + 6.5 NA intron (NM_001363481, intron 2 of 4) intron (NM_001363481, intron 2 of 4) -25826 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 2632.67 chr6 149028591 149029428 + 6.5 NA intron (NR_134599, intron 1 of 1) intron (NR_134599, intron 1 of 1) 3652 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 1291.67-3 chr7 106166695 106167370 + 6.5 NA Intergenic Intergenic -54456 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 2091.17 chr10 117441870 117443343 + 6.5 NA Intergenic Intergenic -67166 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 873.5-4 chr6 158691335 158691776 + 6.5 NA intron (NM_001242394, intron 6 of 17) intron (NM_001242394, intron 6 of 17) 28152 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 1237-3 chr6 161374035 161374297 + 6.5 NA intron (NM_004562, intron 10 of 11) (GT)n|Simple_repeat|Simple_repeat -96811 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 2402.67 chr11 6755280 6756598 + 6.5 NA Intergenic L1ME4a|LINE|L1 13018 NM_001004490 338755 Hs.534614 NM_001004490 ENSG00000188124 OR2AG2 OR11-76|OR2AG2P olfactory receptor family 2 subfamily AG member 2 protein-coding 1658 chr12 107131718 107132177 + 6.5 NA Intergenic Intergenic -38398 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 1342.5-3 chr3 179015221 179016191 + 6.5 NA Intergenic Intergenic 56103 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 1163.83 chr11 61638348 61638849 + 6.5 NA non-coding (NR_002775, exon 5 of 5) non-coding (NR_002775, exon 5 of 5) 23562 NR_002775 113157 Hs.502733 NR_002775 ENSG00000243742 RPLP0P2 RPLP0L2|RPLP0_3_1146 ribosomal protein lateral stalk subunit P0 pseudogene 2 pseudo 1301.33 chr5 151771467 151772069 + 6.5 NA promoter-TSS (NM_005754) promoter-TSS (NM_005754) -186 NM_005754 10146 Hs.3353 NM_005754 ENSG00000145907 G3BP1 G3BP|HDH-VIII G3BP stress granule assembly factor 1 protein-coding 1213.17-2 chr2 146733872 146734520 + 6.5 NA Intergenic Intergenic 147139 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 1593 chr11 94623069 94623575 + 6.5 NA intron (NR_135096, intron 4 of 6) intron (NR_135096, intron 4 of 6) 55954 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 1524.67-3 chr7 111741467 111742195 + 6.5 NA intron (NM_001363540, intron 45 of 52) intron (NM_001363540, intron 45 of 52) -66674 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 1721.5 chr10 89029766 89030566 + 6.5 NA Intergenic MIRc|SINE|MIR -33170 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 1083.67 chr1 224116076 224116762 + 6.5 NA intron (NR_049764, intron 1 of 3) intron (NR_049764, intron 1 of 3) 2308 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 1248.33-2 chr5 72018322 72018609 + 6.5 NA Intergenic MIRc|SINE|MIR -89010 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 1166.83 chr11 43567241 43567919 + 6.5 NA Intergenic Intergenic -1726 NR_131246 100507261 Hs.664953 NR_131246 ENSG00000235661 MIR670HG - MIR670 host gene ncRNA 2247.83 chr8 126823868 126825141 + 6.5 NA Intergenic Intergenic -188650 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 1980.5 chr5 36869812 36871076 + 6.33333 NA TTS (NR_046262) TTS (NR_046262) 6250 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 1456.67 chr5 17132480 17133281 + 6.33333 NA intron (NR_027253, intron 2 of 2) intron (NR_027253, intron 2 of 2) 23112 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 1512.5 chr8 103707073 103707926 + 6.33333 NA intron (NM_001348497, intron 2 of 22) L1MA4|LINE|L1 -111721 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 1516.83 chr10 25725458 25726357 + 6.33333 NA intron (NR_108068, intron 2 of 2) intron (NR_108068, intron 2 of 2) 74195 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 2497.17 chr14 25412040 25412967 + 6.33333 NA Intergenic Intergenic -362206 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 2344 chr6 70686314 70687324 + 6.33333 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 18289 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 1281.84 chr1 209569117 209570311 + 6.33333 NA Intergenic Intergenic -14000 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 1645.33 chr2 147044974 147045307 + 6.33333 NA Intergenic Intergenic 458083 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 2100.5 chr2 37981782 37983179 + 6.33333 NA intron (NM_001170793, intron 4 of 9) LTR78|LTR|ERV1 32016 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 1542.17 chr2 211157393 211158291 + 6.33333 NA Intergenic Intergenic 540271 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 1519.83 chr1 186482606 186482940 + 6.33333 NA Intergenic Intergenic -21659 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 1534 chr17 67689432 67690040 + 6.33333 NA intron (NM_181671, intron 9 of 9) intron (NM_181671, intron 9 of 9) -28097 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 1658.83-2 chr2 221573686 221574181 + 6.33333 NA intron (NM_001304536, intron 1 of 18) CpG-17047 269 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 1371.5 chr1 108512430 108512877 + 6.33333 NA Intergenic Intergenic -47447 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 1889.5-2 chr12 57693501 57694378 + 6.33333 NA promoter-TSS (NM_001261421) promoter-TSS (NM_001261421) -16 NM_001261420 10956 Hs.527861 NM_006812 ENSG00000135506 OS9 ERLEC2|OS-9 OS9 endoplasmic reticulum lectin protein-coding 1544.83-2 chr7 8217375 8218120 + 6.33333 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 44305 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 2492 chr19 46077412 46079198 + 6.33333 NA promoter-TSS (NR_125344) promoter-TSS (NR_125344) -676 NR_163177 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 1071.33-2 chr8 100938538 100938981 + 6.33333 NA intron (NM_001135700, intron 2 of 5) intron (NM_001135700, intron 2 of 5) 11812 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 1438.67 chr15 61834252 61834804 + 6.33333 NA Intergenic Intergenic 104610 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 1982 chr3 24263722 24264868 + 6.33333 NA intron (NM_001354708, intron 2 of 9) MIR3|SINE|MIR 112971 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 1531.67 chr3 150221017 150221713 + 6.33333 NA Intergenic Intergenic -17154 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 2086.83 chr2 177905864 177906665 + 6.33333 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) 16573 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 3176.83 chr6 53484324 53485676 + 6.33333 NA Intergenic Intergenic 60101 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 2022.67 chr6 131910008 131910637 + 6.33333 NA Intergenic Intergenic 41050 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 1574.67 chr1 201114266 201114642 + 6.33333 NA 3' UTR (NM_001270601, exon 1 of 1) 3' UTR (NM_001270601, exon 1 of 1) 918 NM_001270601 647219 Hs.143949 NM_001270601 ENSG00000232237 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 2764.66 chr12 19738804 19740284 + 6.33333 NA Intergenic Intergenic -275141 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 1457.33 chr20 54199624 54200089 + 6.33333 NA Intergenic Intergenic -8231 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 1308.17 chr10 59622284 59622935 + 6.33333 NA Intergenic Intergenic 87282 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 2461.17 chr16 90081488 90082475 + 6.33333 NA Intergenic Intergenic -6051 NM_001098173 11105 Hs.406695 NM_052996 ENSG00000126856 PRDM7 PFM4|ZNF910 PR/SET domain 7 protein-coding 1574.83 chr15 74768638 74769754 + 6.33333 NA Intergenic Intergenic -12884 NM_001127190 1445 Hs.77793 NM_004383 ENSG00000103653 CSK - C-terminal Src kinase protein-coding 1244.33-2 chr7 44477362 44477811 + 6.33333 NA intron (NM_015332, intron 2 of 5) intron (NM_015332, intron 2 of 5) 13072 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 1855 chr13 43908240 43908971 + 6.33333 NA Intergenic Intergenic 28701 NM_001350642 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 1255.83-3 chr7 71735918 71736676 + 6.33333 NA Intergenic MER67D|LTR|ERV1 -428527 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 1750.33-2 chr5 140821185 140821839 + 6.33333 NA promoter-TSS (NM_031501) promoter-TSS (NM_031501) -101 NM_018908 56143 Hs.199343 NM_018908 ENSG00000204965 PCDHA5 CNR6|CNRN6|CNRS6|CRNR6|PCDH-ALPHA5 protocadherin alpha 5 protein-coding 2317.67 chr8 106762822 106764367 + 6.33333 NA intron (NM_139166, intron 1 of 1) intron (NM_139166, intron 1 of 1) 6650 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 1668 chr9 87324742 87325294 + 6.33333 NA Intergenic Intergenic -172210 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 1413 chr7 81499557 81500037 + 6.33333 NA Intergenic Intergenic 62022 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 1457.83 chr6 49849411 49850030 + 6.33333 NA intron (NM_170609, intron 3 of 6) intron (NM_170609, intron 3 of 6) 16815 NM_001131 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 1424.5 chr8 142816044 142816983 + 6.33333 NA Intergenic Intergenic -18288 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 1679 chr1 117758628 117759439 + 6.33333 NA Intergenic Intergenic 152985 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 1499.83-2 chr17 81484113 81484983 + 6.33333 NA Intergenic CpG 28251 NM_001199954 71 Hs.514581 NM_001614 ENSG00000184009 ACTG1 ACT|ACTG|DFNA20|DFNA26|HEL-176 actin gamma 1 protein-coding 1078.67-3 chr15 71440416 71440899 + 6.33333 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -106579 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 1423 chr21 25708461 25709360 + 6.33333 NA intron (NR_072999, intron 7 of 9) intron (NR_072999, intron 7 of 9) -26062 NM_001197297 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 2454.67 chr14 44846004 44847064 + 6.33333 NA Intergenic Intergenic -47408 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 911.834 chr2 64523788 64524534 + 6.33333 NA promoter-TSS (NM_203437) promoter-TSS (NM_203437) -6 NR_136167 101927402 Hs.187018 NR_136167 ENSG00000260101 LOC101927402 - uncharacterized LOC101927402 ncRNA 1377 chr2 231601450 231602147 + 6.33333 NA Intergenic Intergenic 8934 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 1856 chr22 24772418 24773206 + 6.33333 NA intron (NR_045648, intron 1 of 21) intron (NR_045648, intron 1 of 21) 1908 NM_001008496 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 1266.5-2 chr6 116645371 116645955 + 6.33333 NA intron (NR_154589, intron 10 of 10) intron (NR_154589, intron 10 of 10) 23103 NM_145062 221302 Hs.29857 NM_145062 ENSG00000153975 ZUP1 C6orf113|DUB|ZUFSP zinc finger containing ubiquitin peptidase 1 protein-coding 1596 chr2 43577408 43578107 + 6.33333 NA intron (NM_001083953, intron 9 of 37) intron (NM_001083953, intron 9 of 37) 18217 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 1667 chr10 53601204 53601869 + 6.33333 NA Intergenic Intergenic -829836 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 2194 chr14 82855591 82856408 + 6.33333 NA Intergenic Intergenic 213367 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1562.83 chr10 91389375 91390051 + 6.33333 NA intron (NR_024467, intron 3 of 4) L2c|LINE|L2 -19522 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 1899.83 chr1 180515419 180516424 + 6.33333 NA Intergenic Intergenic -13344 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 1359.84 chr1 207620478 207621475 + 6.33333 NA intron (NM_000573, intron 35 of 38) intron (NM_000573, intron 35 of 38) -24157 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 2028-3 chr7 106042624 106043436 + 6.33333 NA Intergenic Intergenic 69282 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 2073.16 chr17 79391601 79392911 + 6.33333 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 123892 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 1354 chr7 21254215 21254636 + 6.33333 NA Intergenic Intergenic -173658 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 1578.17-2 chr17 39980187 39980865 + 6.33333 NA promoter-TSS (NM_002809) promoter-TSS (NM_002809) -281 NM_002809 5709 Hs.12970 NM_002809 ENSG00000108344 PSMD3 P58|RPN3|S3|TSTA2 proteasome 26S subunit, non-ATPase 3 protein-coding 1090-2 chr5 54229181 54229629 + 6.33333 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 81168 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 1723.17 chr8 85031927 85032451 + 6.33333 NA Intergenic THE1A|LTR|ERVL-MaLR -75049 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 1259.67 chr4 103099572 103100237 + 6.33333 NA promoter-TSS (NM_020139) promoter-TSS (NM_020139) -70 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 1656 chr2 210444987 210445649 + 6.33333 NA intron (NR_110605, intron 3 of 5) intron (NR_110605, intron 3 of 5) 31387 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 2388.33 chr1 75232959 75233946 + 6.33333 NA intron (NM_001320283, intron 10 of 21) intron (NM_001320283, intron 10 of 21) 99064 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 867.5 chr12 83823716 83824083 + 6.33333 NA Intergenic LTR28C|LTR|ERV1 1088900 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 2113.5 chr2 79219408 79220662 + 6.33333 NA Intergenic Intergenic -60282 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 1161.17-3 chr3 189948295 189949089 + 6.33333 NA Intergenic Intergenic 118770 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 2027.83 chr22 31970189 31971068 + 6.33333 NA promoter-TSS (NR_149128) promoter-TSS (NR_149128) -195 NR_149128 105372999 Hs.512525 NR_149128 LINC02558 - long intergenic non-protein coding RNA 2558 ncRNA 2145.67 chr5 119411770 119412797 + 6.33333 NA Intergenic Intergenic -40214 NM_001199291 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 854.167-2 chr9 133022241 133022819 + 6.33333 NA Intergenic Intergenic 2100 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 711.166 chr1 183281383 183281693 + 6.33333 NA intron (NM_170706, intron 7 of 10) intron (NM_170706, intron 7 of 10) 23336 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 1427.33-2 chr4 38179507 38180274 + 6.33333 NA Intergenic Intergenic 59936 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 934.5-4 chr17 64306678 64307279 + 6.33333 NA Intergenic L1MC4|LINE|L1 -43718 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 1661.5-2 chr8 60613725 60614344 + 6.33333 NA intron (NM_002865, intron 6 of 7) intron (NM_002865, intron 6 of 7) -64706 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 2321 chr1 234309697 234310722 + 6.33333 NA intron (NM_173508, intron 4 of 7) intron (NM_173508, intron 4 of 7) 3742 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 2284.84 chr2 205679408 205680386 + 6.33333 NA Intergenic Intergenic -2603 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 583.333-5 chr7 85750550 85750826 + 6.33333 NA Intergenic L1PA13|LINE|L1 329566 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 735.334 chr17 20992878 20993327 + 6.33333 NA Intergenic Intergenic 49909 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 1833 chr1 240189285 240190235 + 6.33333 NA intron (NM_001348094, intron 4 of 14) intron (NM_001348094, intron 4 of 14) 97877 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 1498.17 chr19 48795250 48795628 + 6.33333 NA exon (NM_001284325, exon 12 of 12) exon (NM_001284325, exon 12 of 12) 15590 NM_001164773 587 Hs.512670 NM_001190 ENSG00000105552 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino acid transaminase 2 protein-coding 1674 chr1 66446151 66446899 + 6.33333 NA Intergenic Intergenic -87068 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 957.667 chr4 42865763 42866254 + 6.33333 NA Intergenic Intergenic -27258 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 2127.17-2 chr3 109731298 109732499 + 6.33333 NA Intergenic Intergenic 129070 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 1476.33 chr2 74392104 74392571 + 6.33333 NA promoter-TSS (NM_001190836) promoter-TSS (NM_001190836) -250 NR_033935 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 1911.83 chr4 94620948 94621872 + 6.33333 NA intron (NM_006457, intron 8 of 12) intron (NM_006457, intron 8 of 12) 136123 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 1846.67-2 chr16 87777320 87778122 + 6.33333 NA intron (NR_120309, intron 2 of 3) L1MC|LINE|L1 1427 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 1421.33 chr17 49407567 49408183 + 6.33333 NA intron (NM_001281496, intron 5 of 6) intron (NM_001281496, intron 5 of 6) 6983 NM_001281496 5245 Hs.514303 NM_002634 ENSG00000167085 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 1770.17 chr9 125143554 125144161 + 6.33333 NA promoter-TSS (NM_001144877) promoter-TSS (NM_001144877) -329 NM_001144877 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 1240.5 chr2 58761962 58762946 + 6.33333 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 241701 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 2929.17 chr10 35195808 35196711 + 6.33333 NA intron (NM_001352445, intron 1 of 2) intron (NM_001352445, intron 1 of 2) 357 NM_001267570 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 2090.33-2 chr11 30142146 30143857 + 6.33333 NA Intergenic Intergenic -88013 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 2192.33 chr17 44533140 44533990 + 6.33333 NA Intergenic Intergenic -23919 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 1411 chr12 6465382 6465969 + 6.16667 NA intron (NR_123717, intron 2 of 3) intron (NR_123717, intron 2 of 3) 5002 NM_016830 6843 Hs.20021 NM_014231 ENSG00000139190 VAMP1 CMS25|SPAX1|SYB1|VAMP-1 vesicle associated membrane protein 1 protein-coding 915.999 chr5 140357584 140358156 + 6.16667 NA Intergenic Intergenic -2324 NM_031467 83697 Hs.550313 NM_031467 ENSG00000113073 SLC4A9 AE4 solute carrier family 4 member 9 protein-coding 1252.5 chr11 131674092 131674563 + 6.16667 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -10771 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 1784 chr10 66180638 66182157 + 6.16667 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 609972 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 1600.17 chr12 43728180 43729249 + 6.16667 NA 3' UTR (NM_001098614, exon 9 of 9) 3' UTR (NM_001098614, exon 9 of 9) 30076 NM_001271826 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 2262.33 chr20 49608781 49609513 + 6.16667 NA Intergenic Intergenic -41010 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 1522.67 chr8 121641792 121642844 + 6.16667 NA promoter-TSS (NM_005328) promoter-TSS (NM_005328) -878 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 1529.5 chr1 48203253 48204090 + 6.16667 NA Intergenic Intergenic -19045 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 2056.83-2 chr10 17226984 17227840 + 6.16667 NA promoter-TSS (NR_108060) promoter-TSS (NR_108060) -514 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 1477.33 chr1 223133571 223134146 + 6.16667 NA intron (NM_003268, intron 4 of 5) intron (NM_003268, intron 4 of 5) 9390 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 2087 chr4 69689443 69690141 + 6.16667 NA Intergenic MIRc|SINE|MIR -36545 NM_006798 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 1612.83-2 chr5 168987316 168988024 + 6.16667 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -25557 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 823.667 chr1 178532225 178532773 + 6.16667 NA Intergenic Intergenic -10297 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 1376 chr10 9302283 9302745 + 6.16667 NA Intergenic Tigger16a|DNA|TcMar-Tigger -6921 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 1923.83 chr1 197521092 197522006 + 6.16667 NA intron (NR_125340, intron 17 of 19) MIR|SINE|MIR 253297 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 569.167-2 chr17 9928991 9929280 + 6.16667 NA intron (NM_003644, intron 5 of 9) intron (NM_003644, intron 5 of 9) -23864 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 3964.33 chr14 37149656 37151247 + 6.16667 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -21575 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 1501.67-2 chr5 141560938 141561463 + 6.16667 NA intron (NR_038333, intron 1 of 2) intron (NR_038333, intron 1 of 2) 2889 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 1400.17 chr20 54649196 54649893 + 6.16667 NA intron (NM_018431, intron 7 of 7) intron (NM_018431, intron 7 of 7) 173951 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 2194.33 chr4 47933614 47934636 + 6.16667 NA intron (NR_125879, intron 1 of 2) intron (NR_125879, intron 1 of 2) -19458 NM_001278623 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 2258.17 chr17 57597227 57598238 + 6.16667 NA intron (NM_001322250, intron 8 of 13) MER58B|DNA|hAT-Charlie 10680 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 1498.83 chr14 58166118 58167000 + 6.16667 NA Intergenic MLT1E3|LTR|ERVL-MaLR -14346 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 991.834 chr1 23539563 23540259 + 6.16667 NA Intergenic Intergenic -8678 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 756.666-2 chr9 35072632 35072988 + 6.16667 NA promoter-TSS (NM_007126) promoter-TSS (NM_007126) -142 NM_001354927 7415 Hs.529782 NM_007126 ENSG00000165280 VCP CDC48|TERA|p97 valosin containing protein protein-coding 1244.83 chr19 49569956 49570567 + 6.16667 NA intron (NM_001270960, intron 1 of 8) intron (NM_001270960, intron 1 of 8) 10295 NM_001270960 51070 Hs.7236 NM_015953 ENSG00000142546 NOSIP CGI-25 nitric oxide synthase interacting protein protein-coding 1049.17 chr12 7219514 7220045 + 6.16667 NA Intergenic Intergenic 29417 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 1752 chr17 64281814 64282463 + 6.16667 NA Intergenic Intergenic -18878 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 1458.66 chr11 106156123 106156706 + 6.16667 NA Intergenic Intergenic -24298 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 2475.5 chr1 67534817 67536024 + 6.16667 NA Intergenic Intergenic -105018 NM_001018067 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 1352.17 chr12 54853677 54854229 + 6.16667 NA promoter-TSS (NM_058173) promoter-TSS (NM_058173) -563 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 1326.33 chr10 48657729 48658701 + 6.16667 NA Intergenic Intergenic -1950 NR_045675 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 1704.33-3 chr3 39498492 39499038 + 6.16667 NA intron (NR_103506, intron 2 of 2) intron (NR_103506, intron 2 of 2) -3301 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 2255.67 chr12 10561890 10562833 + 6.16667 NA intron (NR_146456, intron 1 of 2) L1ME4a|LINE|L1 8982 NR_146455 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 1548.17 chr4 37566529 37567170 + 6.16667 NA intron (NM_001104629, intron 2 of 3) AluSz|SINE|Alu -17384 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 1898.33 chr3 33883211 33884128 + 6.16667 NA Intergenic Intergenic 85039 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 1438.17 chr16 50213668 50214162 + 6.16667 NA intron (NM_001365324, intron 2 of 11) MER2|DNA|TcMar-Tigger -52636 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 1998 chr2 68943173 68943964 + 6.16667 NA Intergenic L1PA16|LINE|L1 9325 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 1588.67 chr7 107874463 107875293 + 6.16667 NA Intergenic Intergenic -16229 NM_001289752 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 2111 chr1 220803102 220804238 + 6.16667 NA intron (NM_022746, intron 4 of 6) intron (NM_022746, intron 4 of 6) 16757 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 1090.17 chr11 10933709 10934194 + 6.16667 NA Intergenic Intergenic 75734 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 2011.33 chr3 183382385 183383124 + 6.16667 NA intron (NM_015078, intron 2 of 29) intron (NM_015078, intron 2 of 29) 45515 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 1583.17 chr1 47175026 47175777 + 6.16667 NA Intergenic Intergenic -3849 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 1430.5 chr1 110202835 110203539 + 6.16667 NA TTS (NM_001010898) TTS (NM_001010898) 6800 NR_046546 100873974 Hs.130515 NR_046546 LINC02586 KCNC4-AS1 long intergenic non-protein coding RNA 2586 ncRNA 1117.5 chr11 102495551 102495836 + 6.16667 NA intron (NR_135076, intron 2 of 2) MLT1H1|LTR|ERVL-MaLR 28438 NR_135076 102723838 Hs.738066 NR_135076 ENSG00000255482 LOC102723838 - uncharacterized LOC102723838 ncRNA 1445.67 chr3 187747680 187748292 + 6.16667 NA Intergenic Intergenic -2518 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 2452.5 chr20 21572049 21572774 + 6.16667 NA intron (NR_109880, intron 1 of 3) intron (NR_109880, intron 1 of 3) 2387 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 4131.67 chr4 110514697 110516931 + 6.16667 NA intron (NM_001977, intron 8 of 19) MLT1A|LTR|ERVL-MaLR 39659 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 1465.67 chr2 206693387 206693941 + 6.16667 NA intron (NM_001093730, intron 8 of 11) Charlie4z|DNA|hAT-Charlie 24732 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 958-4 chr9 84397024 84397549 + 6.16667 NA Intergenic Intergenic -28559 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 2886 chr5 14727107 14728004 + 6.16667 NA intron (NM_054027, intron 8 of 11) intron (NM_054027, intron 8 of 11) 14861 NR_046285 100130744 Hs.660550 NR_046285 LOC100130744 - uncharacterized LOC100130744 ncRNA 1815.17 chr2 216682126 216682766 + 6.16667 NA intron (NM_000599, intron 1 of 3) L3b|LINE|CR1 13103 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 1500.67 chr10 117168127 117168545 + 6.16667 NA promoter-TSS (NR_037436) promoter-TSS (NR_037436) -562 NR_037436 100500893 NR_037436 ENSG00000266782 MIR3663 - microRNA 3663 ncRNA 2155.17 chr5 154945357 154946242 + 6.16667 NA intron (NM_001014990, intron 2 of 5) L2a|LINE|L2 4726 NM_014180 29093 Hs.483924 NM_014180 ENSG00000082515 MRPL22 HSPC158|L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 1211.83 chr19 17305272 17305823 + 6.16667 NA promoter-TSS (NM_023937) promoter-TSS (NM_023937) -325 NM_023937 64981 Hs.515242 NM_023937 ENSG00000130312 MRPL34 L34mt mitochondrial ribosomal protein L34 protein-coding 2536.67 chr20 53915270 53916479 + 6.16667 NA Intergenic Intergenic -40165 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1253-2 chr10 23314570 23315409 + 6.16667 NA intron (NM_001351306, intron 4 of 5) intron (NM_001351306, intron 4 of 5) -28968 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 1184.33 chr11 83819753 83820688 + 6.16667 NA intron (NM_001142699, intron 17 of 27) intron (NM_001142699, intron 17 of 27) -137795 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 2007.67 chr5 149828340 149828911 + 6.16667 NA intron (NM_001172698, intron 3 of 10) intron (NM_001172698, intron 3 of 10) 56685 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 1546 chr11 30918023 30918390 + 6.16667 NA intron (NM_001367979, intron 25 of 38) intron (NM_001367979, intron 25 of 38) 74480 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 1981.83 chr2 76599361 76600996 + 6.16667 NA Intergenic Intergenic -385787 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 1705.83 chr2 72770650 72771456 + 6.16667 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 54980 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 1241.83-2 chr6 38972947 38973671 + 6.16667 NA intron (NM_001371, intron 82 of 91) intron (NM_001371, intron 82 of 91) -20202 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 1254.17 chr2 30713820 30714493 + 6.16667 NA Intergenic Intergenic 93290 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 2592.83 chr1 109399118 109400325 + 6.16667 NA 3' UTR (NM_001199773, exon 9 of 9) 3' UTR (NM_001199773, exon 9 of 9) -1803 NM_002959 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 1675 chr10 66931356 66932213 + 6.16667 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 5748 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 1281-2 chr17 68462919 68463391 + 6.16667 NA intron (NM_001278433, intron 1 of 10) intron (NM_001278433, intron 1 of 10) -5631 NM_001320772 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 1439.33-2 chr20 59782834 59783640 + 6.16667 NA intron (NM_080672, intron 7 of 12) intron (NM_080672, intron 7 of 12) 62027 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1368.33 chr6 97394024 97394745 + 6.16667 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 88798 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 1495.33-2 chr19 51777910 51778370 + 6.16667 NA Intergenic Intergenic 14751 NM_001462 2358 Hs.99855 NM_001462 ENSG00000171049 FPR2 ALXR|FMLP-R-II|FMLPX|FPR2A|FPRH1|FPRH2|FPRL1|HM63|LXA4R formyl peptide receptor 2 protein-coding 1768.17 chr7 44565478 44566309 + 6.16667 NA 3' UTR (NM_001257189, exon 13 of 13) 3' UTR (NM_001257189, exon 13 of 13) 8645 NM_019082 54606 Hs.654762 NM_019082 ENSG00000136271 DDX56 DDX21|DDX26|NOH61 DEAD-box helicase 56 protein-coding 1063.5 chr19 48589015 48589307 + 6.16667 NA intron (NM_177973, intron 3 of 6) L2a|LINE|L2 13425 NM_004605 6820 Hs.369331 NM_004605 ENSG00000088002 SULT2B1 ARCI14|HSST2 sulfotransferase family 2B member 1 protein-coding 1554 chr10 30670382 30671787 + 6.16667 NA Intergenic Intergenic -21190 NR_036438 645954 Hs.408581 NR_036438 SVIL2P SVILP1 supervillin family member 2, pseudogene pseudo 2015 chr20 19784263 19785386 + 6.16667 NA Intergenic Intergenic -101697 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 1437.17-2 chr6 154448513 154449098 + 6.16667 NA intron (NM_001368116, intron 2 of 12) intron (NM_001368116, intron 2 of 12) -14732 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 1176.17 chr1 167556077 167556691 + 6.16667 NA Intergenic Intergenic -2622 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 940.666 chr9 135603703 135604097 + 6.16667 NA Intergenic Intergenic 28975 NR_109814 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 1385.83-2 chr22 29040619 29041228 + 6.16667 NA intron (NM_001206998, intron 2 of 8) intron (NM_001206998, intron 2 of 8) -9447 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 1484.17 chr12 50504128 50504927 + 6.16667 NA promoter-TSS (NM_173602) promoter-TSS (NM_173602) -458 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 1647.67 chr5 140926327 140927019 + 6.16667 NA promoter-TSS (NM_031882) promoter-TSS (NM_031882) -44 NM_031882 56135 Hs.199343 NM_018898 ENSG00000248383 PCDHAC1 PCDH-ALPHA-C1 protocadherin alpha subfamily C, 1 protein-coding 2319.33 chr2 78861295 78862293 + 6.16667 NA Intergenic Intergenic -163908 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 1847 chr5 18313928 18314631 + 6.16667 NA Intergenic Intergenic 507005 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 1884.33-3 chr22 20417932 20418828 + 6.16667 NA Intergenic Intergenic 19445 NM_153334 91179 Hs.474251 NM_153334 ENSG00000244486 SCARF2 NSR1|SREC-II|SREC2|SRECRP-1|VDEGS scavenger receptor class F member 2 protein-coding 1441.83 chr3 16600995 16601686 + 6.16667 NA intron (NM_001351, intron 1 of 10) intron (NM_001351, intron 1 of 10) 3450 NM_001190811 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 1272.17 chr15 60585714 60586343 + 6.16667 NA intron (NM_134260, intron 1 of 11) intron (NM_134260, intron 1 of 11) 6498 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 689.667 chr14 52131737 52132130 + 6.16667 NA Intergenic Intergenic -62874 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 1607 chr6 24430513 24431252 + 6.16667 NA intron (NM_001503, intron 24 of 24) Tigger19a|DNA|TcMar-Tigger 27946 NM_020662 57380 Hs.658612 NM_020662 ENSG00000124532 MRS2 HPT|MRS2L magnesium transporter MRS2 protein-coding 1751.83 chr1 107782032 107782803 + 6.16667 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -93918 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 1446.33 chr14 62178920 62179977 + 6.16667 NA Intergenic Intergenic -39475 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1676.5 chr3 97719354 97719996 + 6.16667 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -44846 NM_177976 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 2816.83 chr3 187318295 187320259 + 6.16667 NA Intergenic Intergenic -27255 NM_001879 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 2500.83-2 chr7 25565458 25566663 + 6.16667 NA Intergenic Intergenic 97080 NR_157825 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 1590.5 chr19 32224546 32225208 + 6.16667 NA Intergenic Intergenic -118961 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 2407 chr12 43444733 43445653 + 6.16667 NA intron (NM_025003, intron 15 of 38) intron (NM_025003, intron 15 of 38) 107010 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 1768.83 chr11 42524520 42525242 + 6.16667 NA Intergenic Intergenic -271191 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 1822.17 chr7 132580648 132581291 + 6.16667 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) -4405 NM_020911 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 1247.5-4 chr5 172106827 172107708 + 6.16667 NA intron (NM_005990, intron 5 of 18) intron (NM_005990, intron 5 of 18) 80957 NM_005990 6793 Hs.744005 NM_005990 ENSG00000072786 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 2283.67-2 chr8 85462751 85463646 + 6.16667 NA promoter-TSS (NM_001293675) promoter-TSS (NM_001293675) -144 NR_121633 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 766.833-2 chr22 33049066 33049497 + 6.16667 NA intron (NM_003490, intron 1 of 13) intron (NM_003490, intron 1 of 13) 3263 NM_001369908 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 1222.5 chr10 59830414 59831041 + 6.16667 NA intron (NM_005436, intron 3 of 8) intron (NM_005436, intron 3 of 8) 75829 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 1166.83-2 chr17 10616175 10616874 + 6.16667 NA intron (NR_125367, intron 10 of 10) (AAAC)n|Simple_repeat|Simple_repeat 40785 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 1526.5 chr19 52527212 52527662 + 6.16667 NA promoter-TSS (NM_001039886) promoter-TSS (NM_001039886) -219 NM_001321425 388558 Hs.729294 NM_001039886 ENSG00000198482 ZNF808 - zinc finger protein 808 protein-coding 1581.67 chr2 24975199 24975870 + 6.16667 NA intron (NR_034113, intron 1 of 2) MER119|DNA|hAT-Charlie 3422 NR_034113 729723 Hs.436366 NR_034113 ENSG00000224165 DNAJC27-AS1 - DNAJC27 antisense RNA 1 ncRNA 1060.17 chr2 218270187 218270536 + 6.16667 NA promoter-TSS (NM_015488) promoter-TSS (NM_015488) -158 NM_001077399 25953 Hs.98475 NM_015488 ENSG00000127838 PNKD BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|TAHCCP2 PNKD metallo-beta-lactamase domain containing protein-coding 1270.5 chr15 69462510 69463267 + 6.16667 NA Intergenic Intergenic 10070 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 1795.83-2 chr6 153024307 153025286 + 6.16667 NA intron (NM_012419, intron 3 of 4) intron (NM_012419, intron 3 of 4) -21981 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 1346-2 chr10 86377183 86377726 + 6.16667 NA Intergenic CpG -10659 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 1884.33-2 chr2 37395294 37396364 + 6.16667 NA Intergenic L1ME4a|LINE|L1 51199 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 3158.33 chr3 187138776 187140114 + 6.16667 NA promoter-TSS (NM_052969) promoter-TSS (NM_052969) 51 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 2122.67 chr9 27033624 27034387 + 6.16667 NA intron (NM_025103, intron 13 of 19) intron (NM_025103, intron 13 of 19) -28333 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 1458.17 chr1 68345808 68346773 + 6.16667 NA Intergenic LTR16E2|LTR|ERVL 103664 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 1308 chr3 112043448 112044438 + 6.16667 NA intron (NM_001366279, intron 1 of 15) intron (NM_001366279, intron 1 of 15) 965 NM_001366279 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane serine protease 7 protein-coding 731 chr10 100518744 100519152 + 6.16667 NA intron (NM_015490, intron 1 of 25) intron (NM_015490, intron 1 of 25) 913 NM_015490 25956 Hs.18889 NM_015490 ENSG00000075826 SEC31B SEC31B-1|SEC31L2 SEC31 homolog B, COPII coat complex component protein-coding 1176.67 chr1 196660857 196661337 + 6.16667 NA intron (NM_001014975, intron 1 of 9) intron (NM_001014975, intron 1 of 9) 9219 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 2172.5 chr10 52883821 52884681 + 6.16667 NA Intergenic L2|LINE|L2 -112551 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 1554.33 chr15 101006833 101007523 + 6.16667 NA intron (NM_024652, intron 6 of 33) intron (NM_024652, intron 6 of 33) 87821 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 1226.17-2 chr15 76150758 76151628 + 6.16667 NA intron (NM_152335, intron 3 of 10) intron (NM_152335, intron 3 of 10) 30293 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 1491.5 chr10 11472003 11472762 + 6.16667 NA intron (NM_014688, intron 14 of 14) intron (NM_014688, intron 14 of 14) 59898 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 993.833 chr12 119444252 119444708 + 6.16667 NA intron (NM_178499, intron 2 of 13) MamGypLTR3|LTR|Gypsy 109751 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 1681.83 chr20 58233880 58234460 + 6.16667 NA intron (NR_003505, intron 16 of 16) intron (NR_003505, intron 16 of 16) -5517 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 1906.17 chr2 79887560 79888376 + 6.16667 NA intron (NM_001282598, intron 6 of 17) intron (NM_001282598, intron 6 of 17) -21385 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 1126.17 chr10 100433658 100434477 + 6.16667 NA Intergenic Intergenic -28942 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 1324.83-2 chr18 623480 624408 + 6.16667 NA intron (NM_199167, intron 3 of 8) intron (NM_199167, intron 3 of 8) 7244 NM_199167 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 1370 chr14 54441391 54442053 + 6.16667 NA promoter-TSS (NM_005776) promoter-TSS (NM_005776) -348 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 1300.33 chr16 8173234 8173745 + 6.16667 NA Intergenic Intergenic 416349 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1096.83 chr17 63425355 63425609 + 6.16667 NA 3' UTR (NM_025185, exon 26 of 26) 3' UTR (NM_025185, exon 26 of 26) 14785 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 2693.83 chr14 54347781 54348655 + 6.16667 NA Intergenic Intergenic -48650 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 1944.33 chr2 131412500 131413508 + 6.16667 NA Intergenic Intergenic 10103 NR_036499 389043 Hs.586791 NR_036499 LINC01120 - long intergenic non-protein coding RNA 1120 ncRNA 1274.17 chr5 69093562 69094089 + 6.16667 NA promoter-TSS (NM_024055) promoter-TSS (NM_024055) -189 NM_022902 64924 Hs.631975 NM_022902 ENSG00000145740 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 member 5 protein-coding 1621.83-2 chr17 30336308 30337390 + 6.16667 NA Intergenic Intergenic -2792 NM_001319942 388364 Hs.371005 NM_206832 ENSG00000182271 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 1236.84 chr8 106704993 106705640 + 6.16667 NA intron (NM_181354, intron 6 of 13) intron (NM_181354, intron 6 of 13) -20791 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 1594.5-2 chr8 141075657 141076211 + 6 NA Intergenic Intergenic -52655 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 777.666 chr19 44784512 44784897 + 6 NA intron (NM_012116, intron 5 of 10) intron (NM_012116, intron 5 of 10) 6814 NM_012116 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 720 chr15 38474043 38474520 + 6 NA exon (NM_173611, exon 6 of 8) exon (NM_173611, exon 6 of 8) 20154 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 911.5 chr14 81170075 81170819 + 6 NA Intergenic L1P4a|LINE|L1 32387 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 2239 chr3 129934049 129935449 + 6 NA Intergenic Intergenic -39971 NM_007117 7200 Hs.182231 NM_007117 ENSG00000170893 TRH Pro-TRH|TRF thyrotropin releasing hormone protein-coding 1324.5-2 chr13 57624575 57625094 + 6 NA Intergenic Intergenic -6910 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 1404.33 chr7 87416296 87417164 + 6 NA intron (NM_018849, intron 21 of 27) MIR|SINE|MIR 58950 NM_000443 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 2152.67 chr12 64796030 64796968 + 6 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) 15744 NM_001330188 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 925.666 chr6 36302440 36302944 + 6 NA intron (NM_173676, intron 6 of 7) MER5A|DNA|hAT-Charlie 32232 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 1494.5 chr12 1795671 1796319 + 6 NA intron (NM_172364, intron 35 of 37).2 intron (NM_172364, intron 35 of 37).2 -24272 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 1415.17 chr17 39244865 39245329 + 6 NA Intergenic Intergenic -19152 NM_198993 342667 Hs.145068 NM_198993 ENSG00000141750 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 1346 chr10 7871772 7872404 + 6 NA intron (NM_031923, intron 2 of 6) intron (NM_031923, intron 2 of 6) 53583 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 2383.5 chr18 1663631 1665033 + 6 NA Intergenic Intergenic -304703 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1928 chr14 65824416 65825346 + 6 NA Intergenic Intergenic 353779 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 2019.17 chr2 118221770 118222587 + 6 NA Intergenic Intergenic -35792 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 2257.67 chr4 112636931 112637704 + 6 NA promoter-TSS (NM_015454) promoter-TSS (NM_015454) -139 NM_015454 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 1989-2 chr2 219541187 219542515 + 6 NA exon (NM_001195731, exon 2 of 4) exon (NM_001195731, exon 2 of 4) 1246 NM_001195731 79586 Hs.516711 NM_024536 ENSG00000123989 CHPF CHSY2|CSS2 chondroitin polymerizing factor protein-coding 1968.17 chr10 57338520 57339697 + 6 NA Intergenic HUERS-P3-int|LTR|ERV1 -34549 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 1917.5 chr1 20696022 20697030 + 6 NA intron (NM_001122819, intron 6 of 14) CpG 21481 NM_001122819 57576 Hs.130411 NM_020816 ENSG00000117245 KIF17 KIF17B|KIF3X|KLP-2|OSM-3 kinesin family member 17 protein-coding 1809.5-2 chr4 165112939 165113834 + 6 NA promoter-TSS (NM_001100389) promoter-TSS (NM_001100389) -526 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 852.333 chr6 43608413 43608813 + 6 NA intron (NM_006502, intron 9 of 10) AluJo|SINE|Alu 18740 NM_001286216 54676 Hs.485449 NM_019096 ENSG00000172432 GTPBP2 JABELS GTP binding protein 2 protein-coding 1202.5-2 chr5 68272299 68272568 + 6 NA intron (NM_181523, intron 2 of 15) intron (NM_181523, intron 2 of 15) -16086 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 1328.17 chr11 122580153 122580758 + 6 NA Intergenic LTR10F|LTR|ERV1 -75267 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 1001.5-2 chr3 156150407 156151457 + 6 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) 7970 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 1564 chr22 33579447 33580068 + 6 NA intron (NM_133642, intron 5 of 14) intron (NM_133642, intron 5 of 14) 125163 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 1950.5 chr10 44864617 44865441 + 6 NA intron (NR_033842, intron 2 of 7) CpG -46287 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 2025 chr2 176553805 176555019 + 6 NA Intergenic Intergenic 46640 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 1781.83 chr6 55068782 55069710 + 6 NA Intergenic Intergenic -37214 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 1962.67 chr6 55276282 55277191 + 6 NA intron (NM_001526, intron 5 of 7) intron (NM_001526, intron 5 of 7) -50733 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 1707.5 chr20 52128257 52128906 + 6 NA intron (NM_199427, intron 5 of 8) intron (NM_199427, intron 5 of 8) -23097 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 1702-2 chr12 117854356 117855195 + 6 NA intron (NM_173598, intron 3 of 19) MamGypLTR3a|LTR|Gypsy 114215 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 1824.33 chr17 15257112 15257980 + 6 NA intron (NR_104018, intron 1 of 2) intron (NR_104018, intron 1 of 2) 3274 NM_153322 5376 Hs.372031 NM_000304 ENSG00000109099 PMP22 CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110 peripheral myelin protein 22 protein-coding 1829.17-2 chr15 68553669 68554584 + 6 NA intron (NM_001324014, intron 2 of 12) intron (NM_001324014, intron 2 of 12) -24867 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 2028 chr1 119808741 119809464 + 6 NA 5' UTR (NM_001159352, exon 2 of 7) 5' UTR (NM_001159352, exon 2 of 7) 2358 NM_032044 83998 Hs.660883 NM_032044 ENSG00000134193 REG4 GISP|REG-IV|RELP regenerating family member 4 protein-coding 1617 chr11 84564594 84565394 + 6 NA intron (NM_001351274, intron 5 of 26) L3b|LINE|CR1 155948 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 828-4 chr9 15873534 15873951 + 6 NA intron (NM_001355547, intron 22 of 24) intron (NM_001355547, intron 22 of 24) 309764 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 1794.17 chr4 120049451 120050491 + 6 NA Intergenic Intergenic 16877 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 1203.83-3 chr22 36776109 36776505 + 6 NA promoter-TSS (NR_033531) promoter-TSS (NR_033531) -188 NM_001363003 11020 Hs.415172 NM_006860 ENSG00000100360 IFT27 BBS19|RABL4|RAYL intraflagellar transport 27 protein-coding 1519.67-3 chr5 36744030 36745276 + 6 NA Intergenic Intergenic 132041 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 2505.5 chr5 148730716 148731616 + 6 NA Intergenic Intergenic -76639 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 2432.17 chr18 3995437 3996408 + 6 NA intron (NR_102696, intron 4 of 4) intron (NR_102696, intron 4 of 4) 33569 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 2262.83 chr12 7806604 7807345 + 6 NA Intergenic Charlie19a|DNA|hAT-Charlie 17572 NM_001297698 79923 Hs.635882 NM_024865 ENSG00000111704 NANOG - Nanog homeobox protein-coding 1206 chr7 15304894 15305554 + 6 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 256791 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 1796.83 chr15 38817466 38818480 + 6 NA Intergenic Intergenic 121375 NR_160786 1465.83 chr4 3106428 3106993 + 6 NA intron (NM_002111, intron 5 of 66) intron (NM_002111, intron 5 of 66) 32029 NM_002111 3064 Hs.518450 NM_002111 ENSG00000197386 HTT HD|IT15|LOMARS huntingtin protein-coding 1830 chr10 89259888 89260839 + 6 NA Intergenic L2b|LINE|L2 -8324 NM_001288979 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 1032.17-2 chr9 132768764 132769065 + 6 NA intron (NM_001317959, intron 13 of 14) intron (NM_001317959, intron 13 of 14) 98450 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 1055 chr1 234154404 234155299 + 6 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -59360 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 1686.33 chr3 123489538 123490229 + 6 NA Intergenic Intergenic -41338 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 2037.5 chr22 28051417 28052359 + 6 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -131276 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 1740.33 chr3 191050924 191051557 + 6 NA Intergenic L2b|LINE|L2 -148001 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 1977.33 chr1 236868389 236869308 + 6 NA intron (NM_000254, intron 22 of 32) Charlie21a|DNA|hAT-Charlie 73556 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 1243.83-2 chr7 130071643 130072604 + 6 NA intron (NM_014997, intron 1 of 9) intron (NM_014997, intron 1 of 9) 1589 NM_014997 23008 Hs.520710 NM_014997 ENSG00000128607 KLHDC10 slim kelch domain containing 10 protein-coding 1661.67 chr8 80066740 80067566 + 6 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) 13677 NM_001287143 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 1726.33 chr10 26334752 26335578 + 6 NA Intergenic L1M3f|LINE|L1 -103176 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 2048.83 chr20 16801658 16802431 + 6 NA Intergenic Charlie1|DNA|hAT-Charlie 53691 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 1454.5 chr4 10554580 10555232 + 6 NA intron (NM_052964, intron 8 of 18) intron (NM_052964, intron 8 of 18) -97480 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 898 chr9 137240950 137241324 + 6 NA promoter-TSS (NM_006088) promoter-TSS (NM_006088) -150 NM_006088 10383 Hs.433615 NM_006088 ENSG00000188229 TUBB4B Beta2|LCAEOD|TUBB2|TUBB2C tubulin beta 4B class IVb protein-coding 1880.67-2 chr8 52965381 52966390 + 6 NA Intergenic Intergenic 25977 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 911.167 chr2 187843118 187843677 + 6 NA Intergenic Intergenic -288892 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 1742.33 chrX 51460699 51461853 + 6 NA Intergenic Intergenic 35316 NM_018159 55190 Hs.200016 NM_018159 ENSG00000196368 NUDT11 APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta nudix hydrolase 11 protein-coding 1821.33 chr14 64636667 64637605 + 6 NA Intergenic Intergenic -67288 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 1645.67 chr16 77171689 77172473 + 6 NA Intergenic Intergenic -19109 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 1453.5 chr1 100459226 100459973 + 6 NA intron (NM_001319211, intron 8 of 14) MIR3|SINE|MIR -78540 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 1998.67-2 chr7 37201004 37202450 + 6 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 151941 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 1405.5 chr3 194343884 194344359 + 6 NA intron (NM_001080513, intron 1 of 1) intron (NM_001080513, intron 1 of 1) 7207 NM_001080513 1370 Hs.528368 NM_001309 ENSG00000178772 CPN2 ACBP carboxypeptidase N subunit 2 protein-coding 1676.83-2 chr3 98817261 98817895 + 6 NA intron (NM_080927, intron 9 of 15) intron (NM_080927, intron 9 of 15) 54271 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 1782.83 chr13 94620074 94620792 + 6 NA intron (NM_180989, intron 5 of 8) intron (NM_180989, intron 5 of 8) 18576 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 1756.5 chr5 40689389 40689984 + 6 NA intron (NM_000958, intron 2 of 2) intron (NM_000958, intron 2 of 2) 9771 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 1274.83 chr1 23657812 23658526 + 6 NA Intergenic Intergenic 30835 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 1742.5 chr11 59536931 59537962 + 6 NA Intergenic AluSx3|SINE|Alu 22533 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 2043 chr6 150418288 150419241 + 6 NA Intergenic Intergenic 49752 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 1832.33 chr3 121546016 121547221 + 6 NA promoter-TSS (NM_199420) promoter-TSS (NM_199420) -630 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 1227.83 chr1 228664157 228664708 + 6 NA intron (NR_037962, intron 1 of 2) Cheshire|DNA|hAT-Charlie -18274 NR_023377 100169766 NR_023377 ENSG00000201925 RNA5S15 RN5S15 RNA, 5S ribosomal 15 rRNA 1918.83 chr10 15824321 15824950 + 6 NA intron (NM_024948, intron 8 of 14) intron (NM_024948, intron 8 of 14) 35872 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 1618.67 chr4 89024025 89024670 + 6 NA intron (NM_014883, intron 2 of 23) intron (NM_014883, intron 2 of 23) 32838 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 1336.17 chr20 14337275 14337816 + 6 NA promoter-TSS (NM_198391) promoter-TSS (NM_198391) 67 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 1164.5 chr1 145845364 145845800 + 6 NA promoter-TSS (NM_001012758) promoter-TSS (NM_001012758) -48 NM_001012758 200035 Hs.585066 NM_001012758 ENSG00000186364 NUDT17 - nudix hydrolase 17 protein-coding 1717.67 chr2 180123962 180124873 + 6 NA Intergenic Intergenic -117120 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 2373.83-2 chr8 101326765 101327374 + 6 NA Intergenic Intergenic -41824 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 1639.83 chr10 109884078 109884608 + 6 NA intron (NM_020383, intron 8 of 20) intron (NM_020383, intron 8 of 20) 38903 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 1968.5-2 chr9 132799941 132801089 + 6 NA intron (NM_001317959, intron 12 of 14) intron (NM_001317959, intron 12 of 14) -77829 NM_001316898 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 732.667 chr13 100572756 100573342 + 6 NA intron (NM_001195087, intron 2 of 2) intron (NM_001195087, intron 2 of 2) 15743 NM_001195087 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 1849.33 chr12 119649010 119649851 + 6 NA Intergenic Intergenic -18703 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 2523.17 chr7 25093234 25094689 + 6 NA Intergenic AluY|SINE|Alu 31400 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 1282.5 chr11 7986846 7987348 + 6 NA promoter-TSS (NM_003754) promoter-TSS (NM_003754) -240 NM_003754 8665 Hs.516023 NM_003754 ENSG00000175390 EIF3F EIF3S5|MRT67|eIF3-p47 eukaryotic translation initiation factor 3 subunit F protein-coding 1782.83-2 chr8 103073420 103074242 + 6 NA TTS (NM_001695) TTS (NM_001695) -47201 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 878.5 chr1 163071897 163072365 + 6 NA 5' UTR (NM_001113380, exon 1 of 5) 5' UTR (NM_001113380, exon 1 of 5) 226 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 2176.33 chr12 51047480 51048310 + 6 NA promoter-TSS (NM_001351334) promoter-TSS (NM_001351334) -325 NR_147098 25875 Hs.655272 NM_015416 ENSG00000050426 LETMD1 1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3 LETM1 domain containing 1 protein-coding 1324.5 chr11 94897214 94897718 + 6 NA Intergenic Intergenic 76090 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 1187.83 chr1 235416883 235417534 + 6 NA intron (NM_001287801, intron 4 of 17).2 intron (NM_001287801, intron 4 of 17).2 49781 NM_003193 6905 Hs.744998 NM_003193 ENSG00000284770 TBCE HRD|KCS|KCS1|PEAMO|pac2 tubulin folding cofactor E protein-coding 1813.17-2 chr22 20563722 20564714 + 6 NA intron (NM_001003891, intron 5 of 17) intron (NM_001003891, intron 5 of 17) 56171 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 848.333 chr1 165601537 165602127 + 6 NA Intergenic Intergenic -19677 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LRRC52-AS1 - LRRC52 antisense RNA 1 ncRNA 1697 chr22 40646356 40646848 + 6 NA Intergenic AluY|SINE|Alu -9883 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 2202.33 chr12 13255352 13256246 + 6 NA Intergenic Intergenic 59073 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 2028-2 chr11 41460876 41461669 + 6 NA Intergenic Intergenic -1620 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1454.83 chr8 17152374 17153056 + 6 NA Intergenic Intergenic -3767 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 1333.5 chr19 47244056 47244962 + 6 NA Intergenic Intergenic -11842 NM_001127240 27113 Hs.467020 NM_014417 ENSG00000105327 BBC3 JFY-1|JFY1|PUMA BCL2 binding component 3 protein-coding 979.834-2 chr15 55168125 55169044 + 6 NA Intergenic Intergenic 28357 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 1731.17 chr2 172806169 172806965 + 6 NA intron (NM_007023, intron 3 of 30) intron (NM_007023, intron 3 of 30) -15020 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 1223.17 chr17 42024810 42025298 + 6 NA TTS (NM_001242704) TTS (NM_001242704) 4964 NM_001144928 28511 Hs.632252 NM_017595 ENSG00000168256 NKIRAS2 KBRAS2|kappaB-Ras2 NFKB inhibitor interacting Ras like 2 protein-coding 1550.33-2 chr8 81708374 81709311 + 6 NA intron (NR_033193, intron 5 of 7) MIR|SINE|MIR 12458 NM_024699 79752 Hs.655453 NM_024699 ENSG00000104231 ZFAND1 - zinc finger AN1-type containing 1 protein-coding 1082.67 chr1 237806513 237807209 + 6 NA intron (NM_001035, intron 99 of 104) intron (NM_001035, intron 99 of 104) -55314 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 1818 chr10 34636978 34638224 + 6 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 177695 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1284.83 chr12 46124836 46125306 + 6 NA Intergenic Intergenic -134497 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 1200 chr3 90093175 90093548 + 6 NA Intergenic Intergenic 985740 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1193.5-2 chr2 20098142 20098626 + 5.83333 NA Intergenic Intergenic -46756 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 1606.5-2 chr10 101213510 101214095 + 5.83333 NA Intergenic CpG 15158 NM_006562 10660 Hs.37128 NM_006562 ENSG00000138136 LBX1 HPX-6|HPX6|LBX1H|homeobox ladybird homeobox 1 protein-coding 1556 chr15 57732158 57732974 + 5.83333 NA Intergenic Intergenic 25852 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 2264.5 chr14 59918609 59919606 + 5.83333 NA promoter-TSS (NM_001355272) promoter-TSS (NM_001355272) -606 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 1745 chr8 119866854 119867569 + 5.83333 NA Intergenic MER20B|DNA|hAT-Charlie -6444 NM_001283012 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 1096.67 chr1 224922477 224923143 + 5.83333 NA Intergenic LTR41B|LTR|ERVL -6844 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 2584.5 chr14 51780029 51781211 + 5.83333 NA Intergenic Intergenic 63337 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 1468.5 chr11 48109909 48110509 + 5.83333 NA intron (NM_001098503, intron 2 of 8) AluSx|SINE|Alu 13427 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 684.5-2 chr16 66357474 66357764 + 5.83333 NA Intergenic Intergenic -9072 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 1552.33 chr6 55980390 55981034 + 5.83333 NA Intergenic Intergenic -105122 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 1149.67 chr1 74689942 74690389 + 5.83333 NA Intergenic L2c|LINE|L2 -16373 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 2793.33 chr5 148732791 148734016 + 5.83333 NA Intergenic HAL1b|LINE|L1 -78876 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 2151.33 chr7 5085187 5086065 + 5.83333 NA Intergenic Intergenic 13566 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1118.83 chr1 115807659 115808289 + 5.83333 NA Intergenic Intergenic 32729 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 2711 chr5 16456172 16457073 + 5.83333 NA intron (NM_033414, intron 4 of 5) intron (NM_033414, intron 4 of 5) 9178 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 1977 chr8 86088135 86089501 + 5.83333 NA Intergenic Intergenic -10092 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 2672.67 chr3 40191040 40192323 + 5.83333 NA intron (NM_001284424, intron 10 of 15) MIRb|SINE|MIR 91670 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 1683.5 chr1 158203581 158204387 + 5.83333 NA Intergenic Intergenic 24037 NM_001319145 912 Hs.1799 NM_001766 ENSG00000158473 CD1D CD1A|R3|R3G1 CD1d molecule protein-coding 1910 chr5 5418950 5420198 + 5.83333 NA Intergenic Intergenic -3103 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 1792.83 chr10 15878569 15879317 + 5.83333 NA Intergenic Charlie14a|DNA|hAT-Charlie -18410 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 1078.5 chr6 27795998 27796620 + 5.83333 NA Intergenic Intergenic 11622 NM_003519 8340 Hs.137594 NM_003519 ENSG00000185130 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1 H2B family member l protein-coding 2173.5 chr1 48201502 48202994 + 5.83333 NA Intergenic Intergenic -19820 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 574.166-2 chr6 1436647 1436928 + 5.83333 NA Intergenic Intergenic -46376 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 1766.83 chr18 11553040 11553983 + 5.83333 NA Intergenic Intergenic -56047 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 1040.33 chr2 88739747 88740480 + 5.83333 NA intron (NM_144563, intron 8 of 8) intron (NM_144563, intron 8 of 8) -25789 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 1406.17 chr15 38690689 38691461 + 5.83333 NA Intergenic Intergenic -5523 NR_160786 2069 chr21 31604119 31605144 + 5.83333 NA Intergenic Intergenic 45398 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 2532.33 chr9 127734249 127735505 + 5.83333 NA intron (NM_001085347, intron 1 of 4) intron (NM_001085347, intron 1 of 4) 417 NM_001252023 27433 Hs.444106 NM_130459 ENSG00000160404 TOR2A TORP1 torsin family 2 member A protein-coding 1279.67 chr11 39375040 39375722 + 5.83333 NA Intergenic Intergenic 726523 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 1431.67 chr5 10627838 10628365 + 5.83333 NA intron (NM_001164440, intron 2 of 3) intron (NM_001164440, intron 2 of 3) 64031 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 1594.83 chr14 35814307 35814934 + 5.83333 NA Intergenic L1PA16|LINE|L1 -5325 NM_001330075 253959 Hs.113150 NM_014990 ENSG00000174373 RALGAPA1 GARNL1|GRIPE|RalGAPalpha1|TULIP1|p240 Ral GTPase activating protein catalytic alpha subunit 1 protein-coding 1647.5-2 chr17 81101124 81102336 + 5.83333 NA intron (NM_001144888, intron 7 of 13) intron (NM_001144888, intron 7 of 13) 23643 NR_030394 724027 NR_030394 ENSG00000207736 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 947.834-2 chr6 7243621 7243884 + 5.83333 NA intron (NM_001003700, intron 11 of 11) intron (NM_001003700, intron 11 of 11) 69447 NR_120448 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 1443.17 chr2 143259500 143259889 + 5.83333 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 130275 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 998.334 chr1 40338651 40339164 + 5.83333 NA Intergenic Intergenic -21621 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 833.667-4 chr4 113394574 113395209 + 5.83333 NA Intergenic Intergenic 102052 NM_001354282 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 2388 chr18 3771089 3772010 + 5.83333 NA intron (NM_001242762, intron 2 of 9) CpG 73809 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 1042.83-2 chr12 48795755 48796480 + 5.83333 NA Intergenic Intergenic 6541 NR_110020 100506125 Hs.306727 NR_110019 ENSG00000257660 ADCY6-DT - ADCY6 divergent transcript ncRNA 2181.5 chr8 87694961 87695738 + 5.83333 NA Intergenic L2c|LINE|L2 178666 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 1393.33 chr16 30657878 30658848 + 5.83333 NA promoter-TSS (NM_001105079) promoter-TSS (NM_001105079) -68 NM_001105079 64319 Hs.247186 NM_022452 ENSG00000156860 FBRS FBS|FBS1 fibrosin protein-coding 1183.5-2 chr14 54329004 54329592 + 5.83333 NA Intergenic Intergenic -67570 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 2342 chr15 81479958 81481213 + 5.83333 NA Intergenic MIR3|SINE|MIR -106372 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 795.333-2 chr4 125313572 125313866 + 5.83333 NA Intergenic Intergenic -2693 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 1613 chr8 40993733 40994332 + 5.83333 NA Intergenic Intergenic -96206 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 1246.33 chr14 60184284 60184591 + 5.83333 NA Intergenic Intergenic -14573 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 1631 chr5 150449740 150450471 + 5.83333 NA promoter-TSS (NM_001025070) promoter-TSS (NM_001025070) -366 NM_005617 6208 Hs.744846 NM_005617 ENSG00000164587 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 1445.33-2 chr7 98106322 98106831 + 5.83333 NA promoter-TSS (NM_014916) promoter-TSS (NM_014916) -286 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 1861 chr12 124906678 124907705 + 5.83333 NA Intergenic Intergenic 7459 NM_021009 7316 Hs.520348 NM_021009 ENSG00000150991 UBC HMG20 ubiquitin C protein-coding 1857.17 chr17 40803319 40803934 + 5.83333 NA Intergenic Intergenic -3667 NM_181535 162605 Hs.59736 NM_181535 ENSG00000173908 KRT28 K25IRS4|KRT25D keratin 28 protein-coding 1372-2 chr7 3194454 3195236 + 5.83333 NA Intergenic MER74A|LTR|ERVL -36272 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 2125.17 chr20 2521872 2522597 + 5.83333 NA intron (NM_001282495, intron 1 of 6) intron (NM_001282495, intron 1 of 6) 2288 NM_001282495 79175 Hs.516846 NM_024325 ENSG00000088876 ZNF343 dJ734P14.5 zinc finger protein 343 protein-coding 1270.33 chr5 64634992 64635485 + 5.83333 NA Intergenic Intergenic -55265 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 1222.5-2 chr8 11765405 11765957 + 5.83333 NA Intergenic Intergenic -4029 NR_146182 252969 Hs.293818 NM_145043 ENSG00000154328 NEIL2 NEH2|NEI2 nei like DNA glycosylase 2 protein-coding 1612.67 chr19 4790773 4791653 + 5.83333 NA promoter-TSS (NM_018708) promoter-TSS (NM_018708) -521 NM_018708 55527 Hs.515082 NM_018708 ENSG00000141965 FEM1A EPRAP fem-1 homolog A protein-coding 1247 chr2 118882485 118882844 + 5.83333 NA Intergenic Intergenic -34481 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 1797.33-2 chr22 30088808 30089546 + 5.83333 NA intron (NM_001329457, intron 2 of 11) intron (NM_001329457, intron 2 of 11) 8713 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 1854.5 chr2 177334535 177335544 + 5.83333 NA intron (NR_026966, intron 2 of 8) MIR3|SINE|MIR -21157 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 1678.5 chr16 2903702 2904738 + 5.83333 NA Intergenic CpG -7759 NM_020912 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 2040.5 chr15 78422533 78423400 + 5.83333 NA Intergenic Intergenic -14465 NM_001354994 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA iron responsive element binding protein 2 protein-coding 1504.5 chr1 192473669 192474324 + 5.83333 NA Intergenic Intergenic -101777 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 1728 chr19 36127634 36128474 + 5.83333 NA Intergenic CpG -12012 NM_001003962 826 Hs.515371 NM_001749 ENSG00000126247 CAPNS1 CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain small subunit 1 protein-coding 2127.33 chr5 149268841 149269625 + 5.83333 NA Intergenic Tigger16a|DNA|TcMar-Tigger -2605 NM_001323063 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 2047.67 chr1 33094871 33095624 + 5.83333 NA intron (NM_001350399, intron 7 of 10) intron (NM_001350399, intron 7 of 10) 13069 NM_001350402 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 1137.83 chr3 129825183 129825429 + 5.83333 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) -30694 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 1790.67 chr8 107908103 107908950 + 5.83333 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 173413 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 2945.33 chr6 112042925 112044582 + 5.83333 NA Intergenic Intergenic -10322 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 1766.67 chr3 65784756 65785776 + 5.83333 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -108550 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 1587.5 chr12 109393909 109394704 + 5.83333 NA intron (NM_001101421, intron 2 of 30) intron (NM_001101421, intron 2 of 30) 5587 NM_001101421 283446 Hs.512008 NM_173597 ENSG00000174527 MYO1H - myosin IH protein-coding 843.333 chr3 142987226 142987645 + 5.83333 NA intron (NR_125393, intron 2 of 4) intron (NR_125393, intron 2 of 4) 14032 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 1392.17 chr2 23824506 23825072 + 5.83333 NA intron (NR_125717, intron 15 of 28) intron (NR_125717, intron 15 of 28) 102334 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 1660.33 chr15 59724343 59725311 + 5.83333 NA Intergenic AluSx|SINE|Alu -35507 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 1407 chr1 21195137 21195760 + 5.83333 NA Intergenic Intergenic -18551 NM_001198801 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 1801.5 chr15 33700502 33701742 + 5.83333 NA intron (NM_001243996, intron 42 of 102) intron (NM_001243996, intron 42 of 102) -267375 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 1447.67 chr15 100572556 100573255 + 5.83333 NA non-coding (NR_148019, exon 6 of 7) non-coding (NR_148019, exon 6 of 7) -13622 NR_073405 441733 Hs.12250 NR_073405 PRKXP1 - PRKX pseudogene 1 pseudo 1534.17-3 chr3 118884608 118885095 + 5.83333 NA Intergenic Intergenic -58225 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 755.5 chr1 115771774 115772431 + 5.83333 NA Intergenic Intergenic -3297 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 1729.83 chr1 220775209 220775903 + 5.83333 NA intron (NM_001331042, intron 4 of 4) L1PA15|LINE|L1 -11357 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 1428 chr2 26503317 26503847 + 5.83333 NA intron (NM_194248, intron 6 of 46) CpG -25458 NM_194323 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 1296-2 chr2 60642035 60642712 + 5.83333 NA Intergenic Intergenic -88719 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 1968.5 chr2 50529073 50530179 + 5.83333 NA intron (NM_001330093, intron 11 of 22) intron (NM_001330093, intron 11 of 22) 166636 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 1965.17 chr5 4941768 4942872 + 5.83333 NA Intergenic Intergenic -92039 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 1082.17 chr1 209747591 209748283 + 5.83333 NA Intergenic CpG -5375 NR_134510 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 3415.33 chr11 112279808 112281055 + 5.83333 NA intron (NR_126004, intron 1 of 3) L3|LINE|CR1 9682 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 1669 chr6 122530379 122531190 + 5.83333 NA intron (NM_001270393, intron 3 of 7) L1M4|LINE|L1 58867 NM_001270393 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 2034 chr3 15107930 15108489 + 5.83333 NA Intergenic Intergenic -9052 NR_126155 64145 Hs.475565 NM_022340 ENSG00000131381 RBSN Rabenosyn-5|ZFYVE20 rabenosyn, RAB effector protein-coding 1228.83 chr1 241610782 241611397 + 5.83333 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 24841 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 1639.17 chr11 38791110 38792013 + 5.83333 NA Intergenic Intergenic 142703 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 1255 chr11 111586197 111586752 + 5.83333 NA Intergenic Intergenic -15975 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 1139 chr8 126567053 126567525 + 5.83333 NA Intergenic LTR43|LTR|ERV1 -8811 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 394.5-7 chr3 111967804 111967949 + 5.83333 NA intron (NM_001134437, intron 15 of 17) intron (NM_001134437, intron 15 of 17) -11150 NM_001272069 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 1539.17-2 chr5 79556311 79556739 + 5.83333 NA Intergenic Intergenic -42391 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 864.167 chr5 8908100 8908645 + 5.83333 NA Intergenic Intergenic 68640 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 852.5 chr2 118003273 118003948 + 5.83333 NA intron (NM_019044, intron 3 of 23) intron (NM_019044, intron 3 of 23) 10460 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 2540.34 chr14 22929405 22930798 + 5.83333 NA promoter-TSS (NM_001282953) promoter-TSS (NM_001282953) 492 NR_110002 101926933 Hs.727321 NR_110002 ENSG00000257285 LOC101926933 - uncharacterized LOC101926933 ncRNA 1388.17 chr10 70146745 70147191 + 5.83333 NA promoter-TSS (NR_073581) promoter-TSS (NR_073581) -228 NR_073582 219743 Hs.533655 NM_173555 ENSG00000156521 TYSND1 NET41 trypsin domain containing 1 protein-coding 1326.67 chr2 45936182 45936818 + 5.83333 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 284825 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 1675.17 chr19 39540203 39540710 + 5.83333 NA promoter-TSS (NM_153232) promoter-TSS (NM_153232) -295 NM_153232 163126 Hs.18949 NM_153232 ENSG00000176396 EID2 CRI2|EID-2 EP300 interacting inhibitor of differentiation 2 protein-coding 1086.5 chr6 166106199 166106659 + 5.83333 NA Intergenic Intergenic 8709 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 1326 chr9 107172333 107172782 + 5.83333 NA Intergenic MIR3|SINE|MIR -69569 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 1432.33 chr5 154649950 154650733 + 5.83333 NA Intergenic Intergenic -32638 NM_001367715 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 1849.83 chr10 19819323 19819982 + 5.83333 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 3220 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 1184.5 chr2 96858003 96858453 + 5.83333 NA promoter-TSS (NM_016466) promoter-TSS (NM_016466) -212 NM_016466 51239 Hs.709507 NM_016466 ENSG00000213337 ANKRD39 - ankyrin repeat domain 39 protein-coding 2012.17 chr6 134173516 134174948 + 5.83333 NA intron (NM_001291995, intron 2 of 10) intron (NM_001291995, intron 2 of 10) 634 NM_001291995 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 1610.17 chr5 17203186 17203994 + 5.83333 NA intron (NR_027253, intron 1 of 2) L2a|LINE|L2 -13233 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 1545.17 chr9 91727398 91728042 + 5.83333 NA intron (NM_001318204, intron 7 of 7) intron (NM_001318204, intron 7 of 7) -91375 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 1352.5 chr2 70994911 70995873 + 5.83333 NA promoter-TSS (NM_144582) promoter-TSS (NM_144582) -519 NM_144582 113419 Hs.516087 NM_144582 ENSG00000144043 TEX261 TEG-261 testis expressed 261 protein-coding 2568.17 chr7 80018806 80019821 + 5.83333 NA Intergenic Intergenic -115518 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 1294.67 chr3 19866853 19867195 + 5.83333 NA Intergenic Intergenic 67193 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 4495 chr15 99702946 99705308 + 5.83333 NA intron (NM_001319206, intron 9 of 11) intron (NM_001319206, intron 9 of 11) 29310 NM_152449 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 1321.67-3 chrX 70197164 70197679 + 5.83333 NA intron (NM_198512, intron 1 of 6) intron (NM_198512, intron 1 of 6) 19938 NM_198512 347516 Hs.454355 NM_198512 ENSG00000184210 DGAT2L6 DC3 diacylglycerol O-acyltransferase 2 like 6 protein-coding 1785 chr11 84557529 84558672 + 5.83333 NA intron (NM_001351274, intron 5 of 26) L2a|LINE|L2 162842 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 1539.17 chr11 74255570 74256337 + 5.83333 NA Intergenic Intergenic -55409 NR_120556 101928580 Hs.569025 NR_120556 ENSG00000246211 P4HA3-AS1 - P4HA3 antisense RNA 1 ncRNA 1287.33-2 chr6 123715478 123715898 + 5.83333 NA Intergenic Intergenic -78595 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 1079 chr11 102390616 102390899 + 5.83333 NA Intergenic L1P4d|LINE|L1 43383 NM_001256163 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 1848.17 chr14 21014364 21015210 + 5.83333 NA Intergenic Intergenic 8599 NR_106774 102465428 NR_106774 ENSG00000284122 MIR6717 hsa-mir-6717 microRNA 6717 ncRNA 1215.33-3 chr5 83564293 83565377 + 5.83333 NA intron (NM_001164098, intron 11 of 13) intron (NM_001164098, intron 11 of 13) -2521 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 2746.33 chr1 24198541 24199827 + 5.83333 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -1056 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 1478.67-2 chr20 54102954 54103709 + 5.83333 NA Intergenic Intergenic -32566 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 1316.83-2 chr14 101707215 101707681 + 5.83333 NA Intergenic Intergenic -22989 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 770.5-2 chr7 5558981 5559471 + 5.83333 NA Intergenic Intergenic -28625 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 2501.67 chr14 81989885 81991225 + 5.83333 NA Intergenic Intergenic -247417 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 1151.83 chr6 155327465 155328131 + 5.83333 NA Intergenic Intergenic -13314 NR_146725 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 1124.17 chr22 17171333 17171598 + 5.83333 NA Intergenic CpG -6178 NM_017829 27440 Hs.26890 NM_017829 ENSG00000069998 HDHD5 CECR5 haloacid dehalogenase like hydrolase domain containing 5 protein-coding 2210.5-2 chr3 69120617 69121574 + 5.83333 NA intron (NM_001304418, intron 2 of 3) intron (NM_001304418, intron 2 of 3) 1500 NM_001304418 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 1816.17 chr11 22875651 22876673 + 5.83333 NA Intergenic Intergenic -15688 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 1148.17-4 chr5 170638487 170639108 + 5.83333 NA TTS (NR_136214) TTS (NR_136214) 42673 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 2429.67 chr17 34542238 34543267 + 5.83333 NA Intergenic L1MD3|LINE|L1 36617 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 2036-2 chr19 35114355 35115006 + 5.83333 NA Intergenic Intergenic -1143 NM_001136011 5349 Hs.301350 NM_005971 ENSG00000089356 FXYD3 MAT8|PLML FXYD domain containing ion transport regulator 3 protein-coding 919.333-3 chr20 59560524 59560789 + 5.83333 NA Intergenic Intergenic -16853 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1333.67 chr2 39379519 39380068 + 5.83333 NA intron (NM_003618, intron 1 of 33) intron (NM_003618, intron 1 of 33) 57492 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 1531.17 chr17 61551046 61551638 + 5.83333 NA Intergenic Intergenic 39877 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 1416.17 chr10 99276855 99277296 + 5.83333 NA Intergenic Intergenic -41200 NM_001166245 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 2504.33 chr22 24850110 24851195 + 5.83333 NA intron (NM_001098498, intron 5 of 23) intron (NM_001098498, intron 5 of 23) 44431 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 1912.5 chr17 33751263 33751901 + 5.83333 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -217822 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 1233.33 chr2 70340955 70341433 + 5.83333 NA Intergenic MLT1F|LTR|ERVL-MaLR -39127 NM_032822 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 2054.5 chr4 44759450 44760655 + 5.83333 NA Intergenic Intergenic -33418 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 1728.5 chr12 62798899 62799751 + 5.83333 NA intron (NM_020700, intron 3 of 9) intron (NM_020700, intron 3 of 9) 135825 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 1627.33 chr7 124155251 124156103 + 5.83333 NA Intergenic Intergenic -122610 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 1695.33 chr1 201709282 201709871 + 5.83333 NA intron (NR_046696, intron 2 of 2) intron (NR_046696, intron 2 of 2) -9932 NR_049823 100847050 NR_049823 ENSG00000264802 MIR5191 - microRNA 5191 ncRNA 1869.33-2 chr10 99560267 99561131 + 5.83333 NA Intergenic Intergenic 27757 NM_145285 159296 Hs.243272 NM_145285 ENSG00000119919 NKX2-3 CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3 NK2 homeobox 3 protein-coding 2195.17 chr5 79133129 79134050 + 5.83333 NA Intergenic Intergenic 21780 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 1919.17 chr1 181937040 181937656 + 5.83333 NA Intergenic L1PA15|LINE|L1 124364 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 424.833-3 chr3 66816314 66816604 + 5.83333 NA Intergenic Intergenic -78123 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 1192.67-3 chr2 113249123 113249391 + 5.83333 NA intron (NM_013952, intron 2 of 11) intron (NM_013952, intron 2 of 11) 12988 NR_015377 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 1819.33-2 chr2 69723951 69724942 + 5.66667 NA intron (NM_001320698, intron 3 of 14) MER91A|DNA|hAT-Tip100 -17688 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 1396.33 chr3 48435951 48436846 + 5.66667 NA intron (NM_024661, intron 1 of 3) intron (NM_024661, intron 1 of 3) 3721 NM_001256968 79714 Hs.187657 NM_024661 ENSG00000164051 CCDC51 - coiled-coil domain containing 51 protein-coding 2120.17 chr1 115706516 115707402 + 5.66667 NA intron (NM_001232, intron 8 of 10) intron (NM_001232, intron 8 of 10) 61846 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 1081.17-3 chr8 78924717 78925381 + 5.66667 NA Intergenic Intergenic 87520 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 1924.5 chr11 63035183 63036197 + 5.66667 NA Intergenic Intergenic -19845 NM_001184733 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 1502.17 chr10 49512373 49512857 + 5.66667 NA intron (NM_001346440, intron 5 of 20) Tigger4b|DNA|TcMar-Tigger 11666 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 1809 chr7 25180344 25181164 + 5.66667 NA promoter-TSS (NM_001371351) promoter-TSS (NM_001371351) -400 NM_001371352 534.333 chr2 62412072 62412336 + 5.66667 NA Intergenic Intergenic 93991 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 812.501 chr15 71011323 71011735 + 5.66667 NA intron (NM_017691, intron 13 of 15) intron (NM_017691, intron 13 of 15) 119086 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 1554.67 chr17 51461403 51462042 + 5.66667 NA Intergenic LTR50|LTR|ERVL 26295 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 1192 chr2 31523824 31524402 + 5.66667 NA 3' UTR (NM_000348, exon 5 of 5) 3' UTR (NM_000348, exon 5 of 5) 56825 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 852.666 chr1 201704338 201704637 + 5.66667 NA intron (NR_046696, intron 2 of 2) intron (NR_046696, intron 2 of 2) -15021 NR_049823 100847050 NR_049823 ENSG00000264802 MIR5191 - microRNA 5191 ncRNA 1577.17 chr15 80969980 80970465 + 5.66667 NA intron (NR_126328, intron 1 of 2) intron (NR_126328, intron 1 of 2) 19597 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 1840 chr2 64646114 64647113 + 5.66667 NA intron (NM_014755, intron 1 of 1) intron (NM_014755, intron 1 of 1) 7300 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 1997 chr12 107091450 107092561 + 5.66667 NA intron (NM_004075, intron 1 of 12) L2a|LINE|L2 1544 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 2113.5-2 chr5 39570398 39571071 + 5.66667 NA Intergenic Intergenic 50303 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 1830.66 chr17 71472606 71473985 + 5.66667 NA Intergenic Intergenic -271116 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1056.33 chr3 30042173 30042491 + 5.66667 NA Intergenic Intergenic -108176 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 1630.67 chr20 56550334 56550894 + 5.66667 NA Intergenic L1MC4a|LINE|L1 17368 NM_001013646 388799 Hs.287759 NM_001013646 ENSG00000213714 FAM209B C20orf107|dJ1153D9.4 family with sequence similarity 209 member B protein-coding 940.667-2 chr3 132399109 132399733 + 5.66667 NA Intergenic Intergenic -18081 NM_015268 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 1207.33-2 chr5 36079079 36079624 + 5.66667 NA Intergenic L1PA17|LINE|L1 -12469 NM_174914 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 478.833-6 chr5 41708228 41708388 + 5.66667 NA Intergenic L1PA7|LINE|L1 135349 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 904.334 chr3 184777979 184778256 + 5.66667 NA Intergenic L2c|LINE|L2 -4962 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LINC02069 - long intergenic non-protein coding RNA 2069 ncRNA 596-6 chr8 11279468 11279745 + 5.66667 NA Intergenic Intergenic -5210 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 1419.5 chr22 46013317 46014003 + 5.66667 NA Intergenic Intergenic 7044 NR_027240 730668 Hs.640071 NR_027240 ENSG00000280424 LOC730668 - dynein heavy chain -like pseudogene pseudo 618.333 chr1 90579004 90579462 + 5.66667 NA Intergenic L2b|LINE|L2 -78517 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 2516.67 chr12 50111528 50112707 + 5.66667 NA promoter-TSS (NM_032901) promoter-TSS (NM_032901) -119 NM_032901 84987 Hs.388645 NM_032901 ENSG00000178449 COX14 C12orf62|PCAG1 cytochrome c oxidase assembly factor COX14 protein-coding 1506.67-2 chr5 123371557 123372153 + 5.66667 NA intron (NM_153223, intron 18 of 20) intron (NM_153223, intron 18 of 20) 51737 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 1337.67 chr20 38435104 38435877 + 5.66667 NA promoter-TSS (NR_015366) promoter-TSS (NR_015366) -113 NR_152756 388796 Hs.400876 NR_015366 ENSG00000196756 SNHG17 - small nucleolar RNA host gene 17 ncRNA 1151.67-3 chr6 44152020 44152451 + 5.66667 NA intron (NM_001318792, intron 19 of 23) MIR3|SINE|MIR -6585 NM_007058 11131 Hs.225953 NM_007058 ENSG00000137225 CAPN11 calpain11 calpain 11 protein-coding 974 chr1 181479033 181479574 + 5.66667 NA Intergenic Intergenic -4214 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 1251.67 chr8 109735030 109735669 + 5.66667 NA Intergenic Intergenic -43558 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 1469.5 chr8 81253489 81254309 + 5.66667 NA Intergenic Intergenic -26637 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 1149.33 chr7 77651423 77651820 + 5.66667 NA Intergenic Intergenic 44644 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 1644.17 chr20 19205352 19206406 + 5.66667 NA Intergenic Intergenic -6763 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 1468.67 chr10 69639219 69639890 + 5.66667 NA Intergenic Intergenic 9307 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 1251-2 chr4 173416966 173417821 + 5.66667 NA intron (NM_001329597, intron 2 of 3) intron (NM_001329597, intron 2 of 3) -18277 NM_007281 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 1916.83 chr17 7989916 7990821 + 5.66667 NA Intergenic CpG -12302 NM_000180 3000 Hs.592109 NM_000180 ENSG00000132518 GUCY2D CACD1|CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC guanylate cyclase 2D, retinal protein-coding 1848.5 chr14 23929565 23930356 + 5.66667 NA Intergenic Intergenic -23810 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 1901.5 chr21 36989568 36990527 + 5.66667 NA intron (NM_001352515, intron 1 of 10) CpG 164 NM_000411 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 1536-2 chr17 60435647 60436407 + 5.66667 NA Intergenic Intergenic 13538 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 1646.33 chr15 98518859 98519657 + 5.66667 NA Intergenic Intergenic -4922 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 1193.33 chr11 20387185 20387585 + 5.66667 NA promoter-TSS (NM_001145166) promoter-TSS (NM_001145166) -145 NM_001145167 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 964 chr16 23727788 23728444 + 5.66667 NA Intergenic Intergenic -14894 NM_001308220 10595 Hs.592041 NM_033266 ENSG00000134398 ERN2 IRE1-BETA|IRE1b|IRE2p|hIRE2p endoplasmic reticulum to nucleus signaling 2 protein-coding 679.334 chr4 107183178 107183634 + 5.66667 NA Intergenic Intergenic -147093 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 1464.83 chr10 80663650 80664315 + 5.66667 NA Intergenic Arthur1B|DNA|hAT-Tip100 14185 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 2500.83 chr4 54217663 54218430 + 5.66667 NA Intergenic Intergenic -11247 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 891.667-2 chr4 44448758 44449328 + 5.66667 NA promoter-TSS (NM_198353) promoter-TSS (NM_198353) -234 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 977.333 chr4 174764063 174764365 + 5.66667 NA intron (NM_006529, intron 3 of 9) intron (NM_006529, intron 3 of 9) 65033 NM_001042543 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 1347.17 chr2 217166145 217166816 + 5.66667 NA Intergenic Intergenic -116253 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 1108.33 chr1 154479609 154480274 + 5.66667 NA non-coding (NR_135169, exon 6 of 6) non-coding (NR_135169, exon 6 of 6) -22278 NM_182499 126668 Hs.387671 NM_182499 ENSG00000163239 TDRD10 - tudor domain containing 10 protein-coding 1572.17 chr6 41424350 41424961 + 5.66667 NA Intergenic Intergenic -77789 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 1613.33 chr9 77457775 77458438 + 5.66667 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 10457 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 2012.33 chr15 98311336 98312238 + 5.66667 NA Intergenic Intergenic 19771 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 1652.67 chr3 195106386 195107073 + 5.66667 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) 12141 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 1720.5 chr5 31581253 31582148 + 5.66667 NA Intergenic Intergenic 49399 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 2091.33 chr2 27303313 27304369 + 5.66667 NA intron (NM_032546, intron 4 of 9) L1MEd|LINE|L1 4604 NM_003353 7349 Hs.534363 NM_003353 ENSG00000163794 UCN UI|UROC urocortin protein-coding 1951 chr1 183234764 183235388 + 5.66667 NA intron (NM_005562, intron 15 of 22) intron (NM_005562, intron 15 of 22) 48812 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 1328.67 chr9 120619660 120620170 + 5.66667 NA intron (NM_001080497, intron 3 of 5) intron (NM_001080497, intron 3 of 5) -39745 NM_001272039 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 2304.83 chr12 3885072 3885940 + 5.66667 NA Intergenic Intergenic -12058 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 1736.67 chr5 30039993 30040925 + 5.66667 NA Intergenic Intergenic 159899 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1376-4 chr3 157081706 157082430 + 5.66667 NA non-coding (NR_034007, exon 4 of 4) non-coding (NR_034007, exon 4 of 4) 227 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 2107 chr20 54194235 54195004 + 5.66667 NA Intergenic MamRep137|DNA|TcMar-Tigger -13468 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 3002.67 chr19 45485193 45486377 + 5.66667 NA exon (NM_206900, exon 10 of 10) exon (NM_206900, exon 10 of 10) 7468 NM_206901 6253 Hs.47517 NM_005619 ENSG00000125744 RTN2 NSP2|NSPL1|NSPLI|SPG12 reticulon 2 protein-coding 1213.83-3 chr6 42044311 42044672 + 5.66667 NA intron (NM_001287434, intron 1 of 4) intron (NM_001287434, intron 1 of 4) 4403 NM_001287434 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 1491.5-2 chr7 26667256 26668015 + 5.66667 NA 3' UTR (NM_001303468, exon 13 of 13) 3' UTR (NM_001303468, exon 13 of 13) 29764 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 1723.16 chr6 49409743 49410640 + 5.66667 NA Intergenic Intergenic 53062 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 1239.5 chr14 39015523 39016107 + 5.66667 NA Intergenic Intergenic -87325 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 1307 chr4 78864579 78865003 + 5.66667 NA intron (NM_017593, intron 9 of 13) intron (NM_017593, intron 9 of 13) 74647 NR_146463 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 1434.17-2 chr7 6435495 6436287 + 5.66667 NA intron (NM_139179, intron 3 of 14) MIR3|SINE|MIR 12063 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 1255.83 chr11 19951234 19951905 + 5.66667 NA intron (NM_182964, intron 10 of 37) intron (NM_182964, intron 10 of 37) -70987 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 1627.83 chr17 54993006 54993623 + 5.66667 NA intron (NM_178509, intron 4 of 17) intron (NM_178509, intron 4 of 17) -24529 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 1506.67 chr22 26835780 26836530 + 5.66667 NA Intergenic Intergenic -24056 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 1667.83 chr3 17258633 17259344 + 5.66667 NA intron (NM_014744, intron 15 of 21) intron (NM_014744, intron 15 of 21) 325792 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 1864.5 chr1 213244382 213245332 + 5.66667 NA intron (NM_001136138, intron 11 of 13) intron (NM_001136138, intron 11 of 13) 193616 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 1135.33-2 chr7 43721388 43721894 + 5.66667 NA intron (NM_001371314, intron 1 of 7) L1MD2|LINE|L1 7882 NM_001371309 1416.5 chr10 102503431 102503939 + 5.66667 NA promoter-TSS (NM_016169) promoter-TSS (NM_016169) -277 NM_016169 51684 Hs.404089 NM_016169 ENSG00000107882 SUFU JBTS32|PRO1280|SUFUH|SUFUXL SUFU negative regulator of hedgehog signaling protein-coding 2365.5 chr18 14086338 14087599 + 5.66667 NA intron (NR_033354, intron 1 of 5) L1M3e|LINE|L1 45467 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 544.167 chr1 207797472 207797740 + 5.66667 NA Intergenic Intergenic 4333 NR_029832 407026 NR_029832 ENSG00000284214 MIR29C MIRN29C|miRNA29C|mir-29c microRNA 29c ncRNA 892.833 chr19 49766396 49766695 + 5.66667 NA promoter-TSS (NM_014203) promoter-TSS (NM_014203) -456 NM_014203 160 Hs.467125 NM_014203 ENSG00000196961 AP2A1 ADTAA|AP2-ALPHA|CLAPA1 adaptor related protein complex 2 subunit alpha 1 protein-coding 2119.17 chr4 76504621 76505271 + 5.66667 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -68622 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 1387 chr5 67209009 67209794 + 5.66667 NA Intergenic Intergenic -12602 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 1526 chr18 70490137 70490986 + 5.66667 NA Intergenic Intergenic -105970 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 544.333 chr2 37168358 37168673 + 5.66667 NA intron (NM_001367551, intron 6 of 6) intron (NM_001367551, intron 6 of 6) -11468 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 1812.17 chr5 154467435 154468458 + 5.66667 NA Intergenic Intergenic 10281 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 2365.17 chr8 63110858 63111858 + 5.66667 NA Intergenic Intergenic -25305 NM_000370 7274 Hs.69049 NM_000370 ENSG00000137561 TTPA ATTP|AVED|TTP1|alphaTTP alpha tocopherol transfer protein protein-coding 1636.67 chr20 38730852 38731884 + 5.66667 NA Intergenic Intergenic 6882 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 3324.33 chr9 90141305 90143372 + 5.66667 NA Intergenic Intergenic -100839 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 979.834-3 chr3 157618264 157618767 + 5.66667 NA Intergenic Intergenic 75171 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 2475.33 chr16 63360306 63361444 + 5.66667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -1324437 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 2614.67 chr2 60707126 60708650 + 5.66667 NA Intergenic Intergenic -48380 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 2606.83 chr7 93621957 93622687 + 5.66667 NA Intergenic Intergenic -47592 NM_001164737 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 1297.17-2 chr12 12563998 12564473 + 5.66667 NA Intergenic Intergenic -1372 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 2029-2 chr12 44948393 44949208 + 5.66667 NA Intergenic Intergenic -34872 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 1329.83 chr3 56494429 56495155 + 5.66667 NA Intergenic Intergenic -26325 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 1015.83-2 chr2 138827581 138828018 + 5.66667 NA Intergenic Intergenic -47409 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 1563.83-2 chr12 55072971 55073810 + 5.66667 NA Intergenic L1M4|LINE|L1 53416 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 2410.67 chr1 31548798 31549825 + 5.66667 NA Intergenic L2a|LINE|L2 -27174 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 1915 chr4 41280607 41281789 + 5.66667 NA Intergenic Intergenic 24270 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 1620.17-2 chr5 88727628 88728325 + 5.66667 NA intron (NM_001131005, intron 10 of 10) intron (NM_001131005, intron 10 of 10) -36935 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 781-3 chr7 108180670 108181561 + 5.66667 NA intron (NM_001371137, intron 20 of 25) intron (NM_001371137, intron 20 of 25) -50754 NM_001318047 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 1065 chr2 26577550 26578603 + 5.66667 NA intron (NM_001322426, intron 4 of 4) intron (NM_001322426, intron 4 of 4) 15489 NM_001105519 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 1288.67-2 chr20 32031276 32032122 + 5.66667 NA 3' UTR (NM_001365692, exon 10 of 10) 3' UTR (NM_001365692, exon 10 of 10) -20543 NM_001172131 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 1226.83-2 chr18 70454866 70455338 + 5.66667 NA Intergenic MamSINE1|SINE|tRNA-RTE -70511 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 3094.33 chr1 31181348 31183352 + 5.66667 NA intron (NM_024522, intron 5 of 6) intron (NM_024522, intron 5 of 6) 57537 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 1649.5 chr4 40976091 40976720 + 5.66667 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -119213 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 1791 chr4 183073204 183074115 + 5.66667 NA Intergenic Intergenic 25540 NR_024008 152641 Hs.745108 NM_153008 ENSG00000251359 WWC2-AS2 C4orf38 WWC2 antisense RNA 2 ncRNA 1465.17 chr17 73255526 73256222 + 5.66667 NA intron (NM_001129885, intron 3 of 5) intron (NM_001129885, intron 3 of 5) 6006 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 1429.83 chr7 111089778 111090253 + 5.66667 NA promoter-TSS (NM_001099660) promoter-TSS (NM_001099660) -991 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 1082.33 chr11 4626127 4626653 + 5.66667 NA Intergenic HUERS-P3b-int|LTR|ERV1 -13325 NM_001004751 390038 Hs.553728 NM_001004751 ENSG00000197428 OR51D1 OR11-14|OR51D1Q olfactory receptor family 51 subfamily D member 1 protein-coding 1553.33 chr10 30590498 30591840 + 5.66667 NA Intergenic Intergenic 38584 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 1351.17-2 chr7 81482484 81483157 + 5.66667 NA Intergenic Intergenic 78999 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 840.833-4 chr2 175282305 175283015 + 5.66667 NA Intergenic Intergenic -100950 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 1548.33 chr11 69101165 69101753 + 5.66667 NA Intergenic Intergenic 18283 NR_036122 100422846 NR_036122 ENSG00000265539 MIR3164 - microRNA 3164 ncRNA 964.5-2 chr12 57905415 57905987 + 5.66667 NA Intergenic Intergenic -9219 NR_148947 283387 Hs.727244 NR_148947 ENSG00000245651 LOC283387 - uncharacterized LOC283387 ncRNA 2240.5 chr10 29590248 29591560 + 5.66667 NA intron (NM_001323599, intron 3 of 38) intron (NM_001323599, intron 3 of 38) 11442 NR_030634 100126327 NR_030634 ENSG00000216035 MIR938 MIRN938|hsa-mir-938 microRNA 938 ncRNA 1267.83 chr14 72513966 72514447 + 5.66667 NA intron (NM_001370288, intron 14 of 16) intron (NM_001370288, intron 14 of 16) -2614 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 1450.83 chr6 134641051 134641595 + 5.66667 NA Intergenic Intergenic -101318 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 1055.67-2 chr5 109409987 109410566 + 5.66667 NA promoter-TSS (NM_014819) promoter-TSS (NM_014819) -302 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 1090.33 chr12 110887817 110888609 + 5.66667 NA intron (NM_152591, intron 8 of 11) intron (NM_152591, intron 8 of 11) 32387 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 1346.33-2 chrX 74133589 74134032 + 5.66667 NA intron (NR_028379, intron 5 of 6) HUERS-P3-int|LTR|ERV1 84651 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 1457-2 chr14 95560628 95561630 + 5.66667 NA Intergenic Intergenic -12433 NR_146449 100506999 Hs.112858 NR_146449 ENSG00000258390 LINC02318 - long intergenic non-protein coding RNA 2318 ncRNA 1069.5-2 chr18 70433805 70434431 + 5.66667 NA Intergenic MLT1B|LTR|ERVL-MaLR -49527 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 2082 chr17 61412089 61413157 + 5.66667 NA non-coding (NR_160788, exon 1 of 1) non-coding (NR_160788, exon 1 of 1) 872 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 2477.17-2 chr6 63763898 63765263 + 5.66667 NA intron (NM_001292009, intron 40 of 43) intron (NM_001292009, intron 40 of 43) -42256 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 1057-3 chr3 97658894 97659392 + 5.66667 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -105378 NM_177976 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 2198.17 chr1 28248048 28249084 + 5.66667 NA Intergenic Intergenic -10952 NM_031459 83667 Hs.469543 NM_031459 ENSG00000130766 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 1611.17 chr10 92965144 92965691 + 5.66667 NA intron (NM_001319195, intron 17 of 21) intron (NM_001319195, intron 17 of 21) -95381 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 1576.83-4 chr8 117303882 117304598 + 5.66667 NA Intergenic Intergenic 169245 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 1391.5 chr1 235415316 235415950 + 5.66667 NA intron (NM_001287801, intron 4 of 17).2 intron (NM_001287801, intron 4 of 17).2 48206 NM_003193 6905 Hs.744998 NM_003193 ENSG00000284770 TBCE HRD|KCS|KCS1|PEAMO|pac2 tubulin folding cofactor E protein-coding 2048.83-2 chr6 40587619 40588263 + 5.66667 NA promoter-TSS (NM_020737) promoter-TSS (NM_020737) -577 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 1158.67-2 chr18 62425317 62426042 + 5.66667 NA Intergenic Intergenic -97346 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 1487.33 chr5 34898250 34898856 + 5.66667 NA intron (NM_001317949, intron 10 of 10) intron (NM_001317949, intron 10 of 10) 16951 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 1387.33 chr14 57532751 57533484 + 5.66667 NA Intergenic Intergenic -39260 NM_001283056 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 1250.83 chr2 98384937 98386163 + 5.66667 NA intron (NM_001298, intron 5 of 7) L1ME4a|LINE|L1 39094 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 1796.67 chr11 27705676 27706333 + 5.66667 NA intron (NM_170731, intron 1 of 1) intron (NM_170731, intron 1 of 1) -4371 NM_170733 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 992.334-3 chr6 111709671 111710495 + 5.66667 NA intron (NM_153047, intron 5 of 13) intron (NM_153047, intron 5 of 13) 49048 NM_153048 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 1515.67 chr18 10851519 10852316 + 5.66667 NA intron (NM_022068, intron 7 of 51) intron (NM_022068, intron 7 of 51) -92268 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 1138.17 chr1 40078476 40079023 + 5.66667 NA intron (NM_001363695, intron 6 of 7) intron (NM_001363695, intron 6 of 7) 18503 NM_001142604 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 1764.83-2 chr14 67359786 67360449 + 5.66667 NA promoter-TSS (NM_004094) promoter-TSS (NM_004094) -211 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 1067.33 chr17 59853329 59853920 + 5.66667 NA Intergenic Intergenic 12358 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 2529.67 chr1 145926684 145927908 + 5.66667 NA non-coding (NR_147182, exon 2 of 3) non-coding (NR_147182, exon 2 of 3) 240 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 2740.5 chr20 31723318 31724293 + 5.66667 NA promoter-TSS (NM_001191) promoter-TSS (NM_001191) 158 NM_001322240 598 Hs.516966 NM_001191 ENSG00000171552 BCL2L1 BCL-XL/S|BCL2L|BCLX|Bcl-X|PPP1R52 BCL2 like 1 protein-coding 1798.83 chr6 166097692 166098534 + 5.66667 NA non-coding (NR_147704, exon 1 of 2) non-coding (NR_147704, exon 1 of 2) 393 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 1309.83 chrX 51614117 51614866 + 5.66667 NA Intergenic Intergenic 4427 NM_001355276 347549 NM_001355276 ENSG00000224109 CENPVL3 CENPVP3 centromere protein V like 3 protein-coding 717.5 chr2 14903612 14904168 + 5.66667 NA Intergenic Intergenic 271173 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 1347.33 chr19 51660902 51661456 + 5.66667 NA Intergenic Intergenic -14300 NM_001098612 100049587 Hs.707374 NM_001098612 ENSG00000254415 SIGLEC14 - sialic acid binding Ig like lectin 14 protein-coding 1470.83 chr2 44479131 44480032 + 5.66667 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 117634 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 2038.67 chr17 69568549 69569713 + 5.66667 NA Intergenic Intergenic -24856 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 2303.5 chr4 42281454 42282448 + 5.66667 NA Intergenic Intergenic 109317 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 1358.67 chr8 119070620 119071632 + 5.66667 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -2344 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 2073 chr10 62244265 62245495 + 5.66667 NA intron (NM_001282941, intron 3 of 4) intron (NM_001282941, intron 3 of 4) 23964 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 1023.33-2 chr17 17641954 17642243 + 5.66667 NA Intergenic Intergenic 35590 NR_131243 105371564 Hs.369680 NR_131243 ENSG00000223979 SMCR2 TCONS_00025215 Smith-Magenis syndrome chromosome region, candidate 2 ncRNA 1475.5 chr1 182962250 182962800 + 5.66667 NA Intergenic Intergenic -9359 NM_001345928 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 2181.66 chr8 144477699 144479423 + 5.66667 NA intron (NM_001329444, intron 1 of 11) MIRc|SINE|MIR 210 NM_001329445 84988 Hs.521937 NM_032902 ENSG00000160972 PPP1R16A MYPT3 protein phosphatase 1 regulatory subunit 16A protein-coding 1590.5-3 chr6 132300077 132300965 + 5.66667 NA intron (NM_015529, intron 10 of 11) intron (NM_015529, intron 10 of 11) 100954 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 1564.5 chr11 13772246 13772851 + 5.66667 NA Intergenic Intergenic -11838 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 1088 chr3 141561506 141561873 + 5.66667 NA intron (NM_006506, intron 9 of 23) intron (NM_006506, intron 9 of 23) 74662 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 1409.67 chr12 48618565 48618906 + 5.66667 NA Intergenic Intergenic 35783 NR_002968 677815 Hs.689717 NR_002968 ENSG00000221491 SNORA2C ACA34|MIR1291|SNORA34 small nucleolar RNA, H/ACA box 2C snoRNA 1375.67 chr4 80215331 80216218 + 5.66667 NA Intergenic Intergenic 18271 NM_001099403 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 1414.5 chr1 119611330 119611824 + 5.66667 NA Intergenic Intergenic -12286 NR_036540 644242 Hs.515383 NR_036540 ENSG00000260941 LINC00622 - long intergenic non-protein coding RNA 622 ncRNA 1156.83 chr7 111763106 111763609 + 5.66667 NA intron (NM_001363540, intron 39 of 52) intron (NM_001363540, intron 39 of 52) -45148 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 627.834-3 chr12 105053208 105053679 + 5.66667 NA intron (NR_027752, intron 10 of 22) MIRc|SINE|MIR 31015 NM_001034173 160428 Hs.42572 NM_001034173 ENSG00000136010 ALDH1L2 mtFDH aldehyde dehydrogenase 1 family member L2 protein-coding 1163.83-4 chr17 29931295 29931945 + 5.66667 NA intron (NM_001145053, intron 1 of 14) intron (NM_001145053, intron 1 of 14) -1392 NM_001282129 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 861.833-2 chr8 126603794 126604066 + 5.66667 NA Intergenic Intergenic -45452 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 1758.17 chr2 205947910 205948689 + 5.66667 NA Intergenic Intergenic 137875 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 1057.33 chr1 27556540 27557244 + 5.66667 NA intron (NM_001029882, intron 3 of 6) intron (NM_001029882, intron 3 of 6) 46602 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 1315.5 chr2 162297774 162298488 + 5.5 NA intron (NM_022168, intron 3 of 15) intron (NM_022168, intron 3 of 15) 20553 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 704.834-3 chr16 58487552 58488087 + 5.5 NA exon (NM_001130487, exon 2 of 16) exon (NM_001130487, exon 2 of 16) -12324 NR_040072 65009 Hs.322430 NM_020465 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 1577.33-2 chr14 73825544 73826129 + 5.5 NA intron (NR_135238, intron 1 of 1) intron (NR_135238, intron 1 of 1) 4299 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 1493.33-2 chr21 14862957 14863813 + 5.5 NA intron (NR_146322, intron 1 of 3) intron (NR_146322, intron 1 of 3) 55283 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 2200.83 chr4 110510867 110511599 + 5.5 NA intron (NM_001977, intron 6 of 19) intron (NM_001977, intron 6 of 19) 35078 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 713 chr12 14664401 14664676 + 5.5 NA intron (NM_004963, intron 10 of 26) intron (NM_004963, intron 10 of 26) 32061 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 1615.33 chr13 92187322 92187955 + 5.5 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 164569 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 1588.33 chr1 23634913 23635615 + 5.5 NA intron (NM_001348075, intron 4 of 6) MIR|SINE|MIR 7930 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 1268.67 chr1 246002937 246003898 + 5.5 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 413995 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 1416.83 chr1 151933763 151934247 + 5.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -24494 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 413.167 chr13 75695784 75696048 + 5.5 NA intron (NM_001306080, intron 1 of 30) intron (NM_001306080, intron 1 of 30) 59586 NM_001306080 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 1915-2 chr7 28389191 28390051 + 5.5 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -22897 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 1009.17-4 chr2 11124631 11124972 + 5.5 NA intron (NR_040080, intron 3 of 8) intron (NR_040080, intron 3 of 8) 7375 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 1239.33 chr11 8225555 8226142 + 5.5 NA intron (NM_002315, intron 3 of 3) intron (NM_002315, intron 3 of 3) 38030 NR_073006 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 1180.67-2 chr2 25950781 25951785 + 5.5 NA intron (NM_002254, intron 5 of 7) intron (NM_002254, intron 5 of 7) 31214 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 1252 chr2 119702441 119703032 + 5.5 NA intron (NR_148341, intron 12 of 16) intron (NR_148341, intron 12 of 16) 23535 NM_030577 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 1587 chr10 112314588 112315484 + 5.5 NA intron (NR_028134, intron 14 of 18) intron (NR_028134, intron 14 of 18) -15348 NR_106772 102465427 NR_106772 ENSG00000283688 MIR6715B hsa-mir-6715b microRNA 6715b ncRNA 2700.83 chr6 16331306 16332344 + 5.5 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 93238 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 782.666 chr16 70653873 70654184 + 5.5 NA intron (NM_152456, intron 2 of 6) intron (NM_152456, intron 2 of 6) 30036 NM_001172772 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 1079-3 chr2 104849066 104850032 + 5.5 NA intron (NR_037883, intron 1 of 3) intron (NR_037883, intron 1 of 3) 1927 NR_131234 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 1213.83-2 chr5 91499839 91500222 + 5.5 NA Intergenic Intergenic -116713 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 1226.33 chr15 96326691 96327832 + 5.5 NA promoter-TSS (NR_125738) promoter-TSS (NR_125738) 100 NR_102743 644192 Hs.58690 NR_102743 ENSG00000247809 NR2F2-AS1 - NR2F2 antisense RNA 1 ncRNA 2828.83 chr15 100349355 100350476 + 5.5 NA non-coding (NR_028139, exon 1 of 2) non-coding (NR_028139, exon 1 of 2) 318 NR_028140 388182 Hs.136982 NM_207383 ENSG00000189419 SPATA41 HSD47 spermatogenesis associated 41 ncRNA 964-2 chr5 38382632 38383223 + 5.5 NA intron (NM_152403, intron 6 of 21) intron (NM_152403, intron 6 of 21) 20544 NR_102750 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 1150.17 chr1 160291024 160291762 + 5.5 NA exon (NM_004371, exon 31 of 33) exon (NM_004371, exon 31 of 33) -6242 NR_036493 5824 Hs.517232 NM_002857 ENSG00000162735 PEX19 D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1 peroxisomal biogenesis factor 19 protein-coding 1282.83 chr10 63216746 63217293 + 5.5 NA intron (NM_001322258, intron 4 of 24) intron (NM_001322258, intron 4 of 24) 52204 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 1519.67-2 chr2 97697238 97697867 + 5.5 NA intron (NR_038386, intron 7 of 9) intron (NR_038386, intron 7 of 9) -16016 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 1656.83-3 chr6 131534311 131534971 + 5.5 NA Intergenic Intergenic -38585 NM_001369020 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 1343.67 chr15 90319802 90320467 + 5.5 NA Intergenic Intergenic 29313 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 903.833 chr6 119129179 119129613 + 5.5 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) 19797 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 1468.5-2 chr6 129251828 129252556 + 5.5 NA exon (NM_001079823, exon 14 of 64) exon (NM_001079823, exon 14 of 64) 369051 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 1028.33-2 chr2 135913719 135914476 + 5.5 NA intron (NM_001293312, intron 11 of 14) intron (NM_001293312, intron 11 of 14) -37654 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 1148.17 chr1 202571946 202572487 + 5.5 NA intron (NM_002481, intron 23 of 23) intron (NM_002481, intron 23 of 23) 32102 NM_001197131 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 1834.5 chr3 17412622 17413533 + 5.5 NA intron (NM_001349091, intron 2 of 19) intron (NM_001349091, intron 2 of 19) 286943 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 1066 chr16 13923321 13924068 + 5.5 NA intron (NM_005236, intron 2 of 10) MIRb|SINE|MIR 3537 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 1615.17 chr12 130031524 130032071 + 5.5 NA Intergenic Intergenic 10545 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 1781.5 chr12 44930395 44931810 + 5.5 NA Intergenic Intergenic -17174 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 1467.5 chr20 44609721 44610407 + 5.5 NA intron (NM_001281444, intron 4 of 5) intron (NM_001281444, intron 4 of 5) 27485 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 1620.33 chr16 55712001 55712683 + 5.5 NA Intergenic Intergenic -12583 NR_033740 390732 Hs.554599 NR_033740 CES1P2 - carboxylesterase 1 pseudogene 2 pseudo 2150 chr5 113611548 113612459 + 5.5 NA Intergenic Charlie4z|DNA|hAT-Charlie 98309 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 1309.33 chr13 60431334 60431635 + 5.5 NA intron (NM_001146070, intron 1 of 13) intron (NM_001146070, intron 1 of 13) 34264 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 1632.33 chr17 72725397 72725995 + 5.5 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -85224 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 1653.33 chr4 48578116 48578890 + 5.5 NA intron (NM_015030, intron 23 of 63) intron (NM_015030, intron 23 of 63) 88251 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 1100.83-3 chr2 186503899 186504299 + 5.5 NA exon (NM_018471, exon 6 of 10) exon (NM_018471, exon 6 of 10) 17839 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 1440 chr14 66624228 66624769 + 5.5 NA intron (NM_001024218, intron 1 of 21) HERVL40-int|LTR|ERVL 117091 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 2061.83 chr5 172712798 172713590 + 5.5 NA Intergenic Intergenic -42309 NR_161233 101928093 Hs.646902 NR_161233 LOC101928093 - uncharacterized LOC101928093 ncRNA 2466.67 chr8 121829667 121830822 + 5.5 NA Intergenic Intergenic -188804 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 2715 chr8 65561780 65562922 + 5.5 NA intron (NR_033893, intron 1 of 4) intron (NR_033893, intron 1 of 4) 315 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 1880.67 chr3 38520927 38521978 + 5.5 NA intron (NR_134938, intron 6 of 7) intron (NR_134938, intron 6 of 7) 25112 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 1151.17-2 chr3 117719309 117719738 + 5.5 NA Intergenic Intergenic -28598 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 2321.67 chr4 102431230 102432374 + 5.5 NA intron (NR_136202, intron 2 of 4) intron (NR_136202, intron 2 of 4) -69557 NM_001165412 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 2635.5 chr11 75383988 75385628 + 5.5 NA Intergenic Intergenic -14683 NM_001260507 6188 Hs.546286 NM_001005 ENSG00000149273 RPS3 S3 ribosomal protein S3 protein-coding 906.333-2 chr1 28359583 28359895 + 5.5 NA Intergenic Intergenic -10001 NM_001350161 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 1353.83-3 chr22 37199203 37200050 + 5.5 NA promoter-TSS (NM_001365878) promoter-TSS (NM_001365878) -203 NM_001365878 114904 Hs.22011 NM_031910 ENSG00000133466 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and TNF related 6 protein-coding 2090.67 chr6 42661339 42662331 + 5.5 NA intron (NM_015255, intron 30 of 46) intron (NM_015255, intron 30 of 46) 60762 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 2163.33 chr20 59850010 59850811 + 5.5 NA Intergenic Intergenic 83227 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 1222.17 chr1 184075341 184075999 + 5.5 NA intron (NM_001363643, intron 3 of 3) intron (NM_001363643, intron 3 of 3) 23940 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 1653.83 chr1 111507774 111508453 + 5.5 NA intron (NM_001081976, intron 1 of 5) intron (NM_001081976, intron 1 of 5) -3992 NM_000677 140 Hs.281342 NM_000677 ENSG00000282608 ADORA3 A3AR adenosine A3 receptor protein-coding 973.5 chr5 175729689 175730298 + 5.5 NA Intergenic Intergenic -66540 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 1975.5 chr6 160519565 160521038 + 5.5 NA Intergenic Intergenic -9177 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 2630.67 chr6 53718312 53720008 + 5.5 NA Intergenic Intergenic -53404 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 1933.67 chr4 55866408 55867631 + 5.5 NA intron (NM_001024924, intron 4 of 18) intron (NM_001024924, intron 4 of 18) 13369 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 3882.67 chr3 184249474 184250742 + 5.5 NA promoter-TSS (NM_001006941) promoter-TSS (NM_001006941) 436 NM_014693 110599583 Hs.146161 NM_014693 ENSG00000284917 EEF1AKMT4-ECE2 ECE-2|ECE2 EEF1AKMT4-ECE2 readthrough protein-coding 1559.17 chr17 76398138 76398617 + 5.5 NA exon (NM_022066, exon 12 of 18) exon (NM_022066, exon 12 of 18) 13099 NM_001142602 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 1368.5 chr10 11782538 11783237 + 5.5 NA Intergenic Intergenic -40469 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 858.334 chr11 115324536 115325226 + 5.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -8696 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 1337.17 chr11 14249353 14249788 + 5.5 NA intron (NM_006108, intron 7 of 15) intron (NM_006108, intron 7 of 15) 108915 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 1601.83 chr10 99246886 99247745 + 5.5 NA Intergenic Intergenic -11440 NM_001166245 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 2477.17 chr18 7037982 7038762 + 5.5 NA intron (NM_005559, intron 11 of 62) intron (NM_005559, intron 11 of 62) 79425 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 2719.83 chr2 182185761 182186965 + 5.5 NA intron (NM_005019, intron 12 of 14) intron (NM_005019, intron 12 of 14) 55700 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 1287 chr11 69918794 69919547 + 5.5 NA Intergenic Intergenic -99754 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 1306.17 chr12 949490 950221 + 5.5 NA promoter-TSS (NR_123713) promoter-TSS (NR_123713) -133 NR_123713 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 1813-2 chr4 83644502 83645360 + 5.5 NA Intergenic Intergenic 108823 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 1227.67-2 chr10 117175839 117176703 + 5.5 NA Intergenic Intergenic -7216 NR_121650 101927704 Hs.342943 NR_121650 ENSG00000234474 MIR3663HG - MIR3663 host gene ncRNA 1387.67-2 chr9 131336213 131336899 + 5.5 NA Intergenic Intergenic 46833 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 1590.33 chr20 46022374 46023300 + 5.5 NA promoter-TSS (NR_147699) promoter-TSS (NR_147699) -764 NR_147699 109729184 Hs.675276 NR_147699 ENSG00000204044 SLC12A5-AS1 - SLC12A5 and MMP9 antisense RNA 1 ncRNA 1640.67 chr10 24642825 24643289 + 5.5 NA intron (NM_001367447, intron 4 of 24) intron (NM_001367447, intron 4 of 24) -20214 NR_160025 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 1181.17 chr17 27654523 27655300 + 5.5 NA Intergenic Intergenic 23723 NM_002308 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 1467.33 chr2 121079945 121080752 + 5.5 NA Intergenic Intergenic 204854 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 1242.17-3 chr7 33242742 33243746 + 5.5 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 113680 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 1653.5 chr16 48630227 48630848 + 5.5 NA Intergenic Intergenic -20357 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 2299.17 chr2 168118821 168120482 + 5.5 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) 127944 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 969.334 chr12 52980521 52981470 + 5.5 NA Intergenic Intergenic -25461 NM_001417 1975 Hs.648394 NM_001417 ENSG00000063046 EIF4B EIF-4B|PRO1843 eukaryotic translation initiation factor 4B protein-coding 915.833 chr11 72144086 72144449 + 5.5 NA Intergenic Intergenic 8542 NM_000804 2352 Hs.352 NM_000804 ENSG00000110203 FOLR3 FR-G|FR-gamma|FRgamma|gamma-hFR folate receptor gamma protein-coding 2902.5 chr7 38105786 38107867 + 5.5 NA Intergenic AluSz|SINE|Alu -71419 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 761.835 chr2 234881806 234882251 + 5.5 NA Intergenic MER45B|DNA|hAT-Tip100 -69989 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 1092 chr1 116138733 116139237 + 5.5 NA Intergenic AluSx1|SINE|Alu 27230 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 1608.5 chr9 34633709 34634500 + 5.5 NA TTS (NM_001282206) TTS (NM_001282206) 3683 NM_005866 10280 Hs.522087 NM_005866 ENSG00000147955 SIGMAR1 ALS16|DSMA2|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R sigma non-opioid intracellular receptor 1 protein-coding 2840.5 chr8 117037641 117038971 + 5.5 NA intron (NM_001172813, intron 2 of 10) intron (NM_001172813, intron 2 of 10) 87331 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 2051.5 chr18 57561337 57562461 + 5.5 NA intron (NM_001371095, intron 7 of 11) intron (NM_001371095, intron 7 of 11) 24803 NM_001371094 1411-2 chr2 187499744 187500434 + 5.5 NA intron (NM_001318941, intron 3 of 7) intron (NM_001318941, intron 3 of 7) -51837 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 1678.83-2 chr8 105907839 105908710 + 5.5 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 152229 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 1350.83 chr4 69617229 69618025 + 5.5 NA intron (NM_001301239, intron 1 of 4) intron (NM_001301239, intron 1 of 4) 22015 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 1515.17 chr1 9181191 9181883 + 5.5 NA promoter-TSS (NR_132738) promoter-TSS (NR_132738) -667 NR_132738 102724571 Hs.599298 NR_132738 ENSG00000234546 LNCTAM34A GUARDIN|LINC01759 long non coding transcriptional activator of miR34a ncRNA 1159.33 chr1 186375172 186375719 + 5.5 NA promoter-TSS (NM_017847) promoter-TSS (NM_017847) -192 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 939.5-3 chr7 84658790 84659068 + 5.5 NA Intergenic Intergenic 126453 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 1092.17 chr1 29340869 29341348 + 5.5 NA intron (NR_110758, intron 1 of 2) LTR41C|LTR|ERVL 9006 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 1164.33 chr15 52208348 52208827 + 5.5 NA exon (NM_018728, exon 36 of 41) exon (NM_018728, exon 36 of 41) -17195 NM_016194 10681 Hs.155090 NM_006578 ENSG00000069966 GNB5 GB5|IDDCA|LADCI G protein subunit beta 5 protein-coding 1976.83 chr22 30920311 30921338 + 5.5 NA intron (NR_146603, intron 1 of 2) L1M3|LINE|L1 955 NR_146603 107985544 Hs.638287 NR_146603 LOC107985544 - uncharacterized LOC107985544 ncRNA 2395.33 chr16 71881994 71883047 + 5.5 NA intron (NM_001318238, intron 2 of 7) intron (NM_001318238, intron 2 of 7) 1021 NM_001201553 55565 Hs.744055 NM_017530 ENSG00000102984 ZNF821 - zinc finger protein 821 protein-coding 1377.33 chr16 57418614 57419379 + 5.5 NA Intergenic Intergenic 14229 NM_002987 6361 Hs.546294 NM_002987 ENSG00000102970 CCL17 A-152E5.3|ABCD-2|SCYA17|TARC C-C motif chemokine ligand 17 protein-coding 1560.17-2 chr5 31186456 31187369 + 5.5 NA Intergenic Intergenic -6774 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1082.17-2 chr3 63232971 63233624 + 5.5 NA Intergenic Intergenic -45011 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 1871.33 chr2 10668255 10669108 + 5.5 NA exon (NM_001261392, exon 6 of 20) exon (NM_001261392, exon 6 of 20) 21294 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 1196.33-2 chr3 193605863 193606502 + 5.5 NA intron (NM_001354663, intron 2 of 29) intron (NM_001354663, intron 2 of 29) 12974 NM_001354663 4976 Hs.594504 NM_015560 ENSG00000198836 OPA1 BERHS|MGM1|MTDPS14|NPG|NTG|largeG OPA1 mitochondrial dynamin like GTPase protein-coding 1286-2 chr5 38809632 38810321 + 5.5 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 35853 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 1651.17 chr1 101520003 101520694 + 5.5 NA Intergenic L1MA4|LINE|L1 196511 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 988.834 chr6 68876959 68877416 + 5.5 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 241905 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 1262.5 chr7 82605231 82605881 + 5.5 NA Intergenic Intergenic -161600 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 1726.17 chr18 5879218 5879969 + 5.5 NA Intergenic Intergenic 16361 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 1657.83 chr5 73536565 73537383 + 5.5 NA Intergenic Intergenic 28665 NM_023039 57763 Hs.239154 NM_023039 ENSG00000164331 ANKRA2 ANKRA ankyrin repeat family A member 2 protein-coding 2734.5 chr17 76623074 76624468 + 5.5 NA TTS (NM_018414) TTS (NM_018414) 19986 NM_001289107 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 1147.17 chr1 66764741 66765385 + 5.5 NA intron (NM_152665, intron 2 of 4) L2a|LINE|L2 12604 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 724.666-2 chr5 18281809 18282413 + 5.5 NA Intergenic Intergenic 474837 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 1801 chr7 43260923 43261890 + 5.5 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 110511 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 1663.33-2 chr8 104130124 104130807 + 5.5 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -92870 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 1625.33 chr3 18988744 18989700 + 5.5 NA Intergenic Intergenic -159288 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 1002.67 chr20 45771114 45771557 + 5.5 NA Intergenic Intergenic 20548 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 1698.67 chr4 112951152 112952103 + 5.5 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) 90640 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 1226.67-2 chr8 119354094 119354653 + 5.5 NA Intergenic Intergenic 29202 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 1149.5 chr5 103224635 103225052 + 5.5 NA Intergenic L1PA17|LINE|L1 -33920 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 1166.5 chr1 235513575 235514148 + 5.5 NA Intergenic MER94|DNA|hAT-Blackjack -9409 NM_152490 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 828 chr10 15106229 15106857 + 5.5 NA 3' UTR (NM_004808, exon 12 of 12) 3' UTR (NM_004808, exon 12 of 12) 9188 NM_001097590 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 852 chr11 44911231 44911965 + 5.5 NA intron (NM_130783, intron 5 of 9) intron (NM_130783, intron 5 of 9) 38562 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 1783 chr12 108803422 108804160 + 5.5 NA intron (NM_018984, intron 10 of 14) intron (NM_018984, intron 10 of 14) 23760 NM_001161331 54434 Hs.199763 NM_018984 ENSG00000084112 SSH1 SSH1L slingshot protein phosphatase 1 protein-coding 555.833 chr16 66728091 66728556 + 5.5 NA intron (NM_006141, intron 9 of 12) intron (NM_006141, intron 9 of 12) 23286 NM_006141 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 2342.67 chr19 45178025 45179018 + 5.5 NA promoter-TSS (NM_001270892) promoter-TSS (NM_001270892) -224 NM_212550 388552 Hs.103902 NM_212550 ENSG00000189114 BLOC1S3 BLOS3|HPS8|RP biogenesis of lysosomal organelles complex 1 subunit 3 protein-coding 1537.17 chr4 81069445 81070380 + 5.5 NA Intergenic Intergenic 39204 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 911-2 chr5 123423356 123423778 + 5.5 NA promoter-TSS (NM_001166226) promoter-TSS (NM_001166226) 25 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 1938.83 chr12 115997797 115998480 + 5.5 NA intron (NM_015335, intron 14 of 30) intron (NM_015335, intron 14 of 30) 150516 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 1992.17 chr20 45290791 45292011 + 5.5 NA Intergenic Intergenic -15439 NM_001281448 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 1274 chr17 39958892 39959374 + 5.5 NA Intergenic Intergenic -3871 NM_178171 284110 Hs.448873 NM_178171 ENSG00000167914 GSDMA FKSG9|GSDM|GSDM1 gasdermin A protein-coding 1479.5-2 chr8 64567239 64567887 + 5.5 NA Intergenic Intergenic 9700 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 2211.17 chr8 40199550 40200282 + 5.5 NA Intergenic Intergenic 46434 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 1441.83-2 chr4 74675855 74676436 + 5.5 NA Intergenic Intergenic 118378 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 1196.67 chr12 69154749 69155265 + 5.5 NA Intergenic MamRep605|LTR?|LTR? -84562 NM_001300947 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 2207.5-2 chr6 35522579 35523423 + 5.5 NA Intergenic Intergenic -10105 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 1481 chr10 6088280 6088891 + 5.5 NA promoter-TSS (NM_001145547) promoter-TSS (NM_001145547) -449 NM_032905 84991 Hs.498548 NM_032905 ENSG00000134453 RBM17 SPF45 RNA binding motif protein 17 protein-coding 1939.83 chr8 24229275 24230177 + 5.5 NA Intergenic Intergenic -64314 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 879.167-4 chr7 25159811 25160261 + 5.5 NA intron (NM_138811, intron 4 of 9) intron (NM_138811, intron 4 of 9) 20318 NM_001371351 1087.83 chr6 6057209 6057876 + 5.5 NA Intergenic Intergenic -49937 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 2052-2 chr6 75208611 75209579 + 5.5 NA Intergenic Intergenic -3042 NM_080645 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 1588.33-3 chr18 45974200 45974881 + 5.5 NA Intergenic Intergenic -7211 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 1479.17 chr5 55159853 55160264 + 5.5 NA promoter-TSS (NR_131337) promoter-TSS (NR_131337) -113 NM_001306197 493869 Hs.289044 NM_001008397 ENSG00000164294 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 1808.67 chr12 42332204 42333012 + 5.5 NA intron (NM_001364834, intron 1 of 9) intron (NM_001364834, intron 1 of 9) 810 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 1362.17 chr14 36373935 36374576 + 5.5 NA Intergenic Intergenic -53579 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 1810.5 chr3 98596538 98597376 + 5.5 NA Intergenic Intergenic -3346 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 1192.5 chr9 130682382 130683112 + 5.5 NA 3' UTR (NM_021619, exon 5 of 5) 3' UTR (NM_021619, exon 5 of 5) -11013 NM_001282708 23404 Hs.654643 NM_014285 ENSG00000130713 EXOSC2 RRP4|Rrp4p|SHRF|hRrp4p|p7 exosome component 2 protein-coding 2312 chr7 114025927 114026915 + 5.5 NA Intergenic Intergenic -59906 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 1796.17 chr10 13160879 13161580 + 5.5 NA promoter-TSS (NM_182751) promoter-TSS (NM_182751) -329 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 1439.33-3 chr7 31122560 31123180 + 5.5 NA Intergenic Intergenic 70409 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 1165.67 chr12 97308778 97309216 + 5.5 NA Intergenic Intergenic -153779 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 2827.33 chr14 49852187 49854191 + 5.5 NA promoter-TSS (NM_004713) promoter-TSS (NM_004713) 14 NM_001301732 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 1503 chr4 64539155 64540067 + 5.5 NA Intergenic Intergenic -130151 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1676.83 chr2 15637019 15637775 + 5.5 NA Intergenic Intergenic 45529 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 1622.83-2 chr7 27196033 27196794 + 5.5 NA 3' UTR (NM_000522, exon 2 of 2) 3' UTR (NM_000522, exon 2 of 2) 3678 NM_000522 3209 Hs.592172 NM_000522 ENSG00000106031 HOXA13 HOX1|HOX1J homeobox A13 protein-coding 1003.5-2 chr3 51941878 51942248 + 5.5 NA promoter-TSS (NM_005485) promoter-TSS (NM_005485) -159 NM_004704 9136 Hs.153768 NM_004704 ENSG00000114767 RRP9 RNU3IP2|U3-55K ribosomal RNA processing 9, U3 small nucleolar RNA binding protein protein-coding 1298.33-2 chr8 89718216 89718671 + 5.5 NA intron (NR_125822, intron 4 of 4) intron (NR_125822, intron 4 of 4) 39268 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 1612.67-2 chr20 46562425 46563158 + 5.5 NA intron (NM_001193340, intron 12 of 12) (TC)n|Simple_repeat|Simple_repeat -12137 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 1699.67 chr10 92884530 92885315 + 5.5 NA intron (NM_001319195, intron 1 of 21) intron (NM_001319195, intron 1 of 21) 36402 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 1614.17 chr7 85030518 85031638 + 5.5 NA intron (NM_152754, intron 10 of 16) intron (NM_152754, intron 10 of 16) 90853 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 1248.17-2 chr20 50992662 50993374 + 5.5 NA Intergenic LTR33|LTR|ERVL 30089 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 1349.17 chr3 99023370 99023829 + 5.5 NA Intergenic Intergenic -121904 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 624.667-4 chr8 97595747 97596210 + 5.5 NA Intergenic Intergenic -48206 NM_001363137 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 1489 chr11 72642942 72643478 + 5.5 NA promoter-TSS (NM_001243784) promoter-TSS (NM_001243784) -750 NM_001243784 5138 Hs.503163 NM_002599 ENSG00000186642 PDE2A CGS-PDE|PDE2A1|PED2A4|cGSPDE phosphodiesterase 2A protein-coding 1622.17-3 chr5 39948609 39949429 + 5.5 NA Intergenic Intergenic -103272 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 1348.83 chr6 142474366 142474958 + 5.5 NA Intergenic Intergenic 163174 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 1830-2 chr8 83824895 83825744 + 5.5 NA Intergenic Intergenic -357468 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1542.67 chr9 94065059 94066013 + 5.5 NA intron (NM_177995, intron 2 of 9) intron (NM_177995, intron 2 of 9) -18893 NM_152422 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 1127.33 chr1 118077175 118077729 + 5.5 NA intron (NM_206996, intron 15 of 48) intron (NM_206996, intron 15 of 48) 107776 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 1205.83 chr22 42437417 42437906 + 5.5 NA intron (NM_001371362, intron 1 of 7) Tigger16a|DNA|TcMar-Tigger 325 NM_001371362 1098.67-3 chr8 25169949 25170435 + 5.5 NA Intergenic MIRb|SINE|MIR -14497 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 2010.5-2 chr6 148947747 148948631 + 5.5 NA intron (NM_005715, intron 3 of 7) intron (NM_005715, intron 3 of 7) 16495 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 1194.17-3 chrX 22192877 22193315 + 5.5 NA TTS (NR_073010) TTS (NR_073010) -20113 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 2155.83 chr10 22010512 22011474 + 5.5 NA Intergenic Intergenic -7263 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 1510.67-2 chrX 71859606 71860122 + 5.5 NA Intergenic Intergenic -51224 NM_001013627 340527 Hs.397836 NM_001013627 ENSG00000204131 NHSL2 - NHS like 2 protein-coding 1723.33 chr8 81870674 81871672 + 5.5 NA Intergenic Intergenic -28887 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 1745.17 chr3 3998123 3998840 + 5.5 NA Intergenic Intergenic -197606 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 771.667-3 chr6 41306164 41306863 + 5.5 NA Intergenic Intergenic -19768 NR_136332 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 1864.67 chr12 62793864 62794609 + 5.5 NA intron (NM_020700, intron 3 of 9) intron (NM_020700, intron 3 of 9) 140914 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 1650.33 chr22 22156459 22157299 + 5.5 NA Intergenic Intergenic -87907 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 731-3 chr8 86342368 86342625 + 5.5 NA promoter-TSS (NM_007013) promoter-TSS (NM_007013) -51 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 1267.67 chr10 103884407 103885283 + 5.5 NA intron (NM_024928, intron 9 of 9) intron (NM_024928, intron 9 of 9) -29439 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 1413.17-2 chr5 80672118 80672850 + 5.5 NA intron (NM_002439, intron 5 of 23) intron (NM_002439, intron 5 of 23) -17501 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 2632.5 chr7 77758987 77760263 + 5.5 NA intron (NM_198467, intron 3 of 7) intron (NM_198467, intron 3 of 7) 38809 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 457.667-3 chr19 10388834 10389118 + 5.5 NA Intergenic Intergenic -8404 NM_003331 7297 Hs.75516 NM_003331 ENSG00000105397 TYK2 IMD35|JTK1 tyrosine kinase 2 protein-coding 1278.33 chr7 19713387 19713919 + 5.5 NA Intergenic Intergenic -4616 NM_001002926 221830 Hs.353035 NM_001002926 ENSG00000105849 TWISTNB - TWIST neighbor protein-coding 1492.5 chr18 8654231 8655096 + 5.5 NA Intergenic Intergenic 45218 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 1231.33 chr1 78114500 78115219 + 5.5 NA intron (NM_001304725, intron 3 of 5) L1MC1|LINE|L1 68893 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 1909.17 chr5 113606311 113607191 + 5.5 NA Intergenic HUERS-P3b-int|LTR|ERV1 93057 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 1037.33-2 chr5 158695104 158695990 + 5.5 NA TTS (NM_024007) TTS (NM_024007) -285774 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 1009-4 chrX 68196783 68197148 + 5.5 NA intron (NM_002547, intron 12 of 24) MIRb|SINE|MIR 236530 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 2210.5 chr1 48092869 48094302 + 5.5 NA Intergenic Intergenic 88843 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 1163.5-3 chr8 142472035 142472582 + 5.5 NA intron (NM_001702, intron 2 of 30) intron (NM_001702, intron 2 of 30) 22659 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 1478.83-3 chr11 121194517 121195510 + 5.5 NA Intergenic Intergenic 92347 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 1649.83 chr2 224357129 224357724 + 5.5 NA Intergenic Intergenic 44568 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 1397.67 chr3 111717445 111718303 + 5.5 NA intron (NM_153268, intron 3 of 3) intron (NM_153268, intron 3 of 3) -14622 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 3750.34 chr7 26368805 26370629 + 5.5 NA intron (NM_001318199, intron 5 of 6) intron (NM_001318199, intron 5 of 6) 5392 NM_001199838 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 2256.66 chr3 11059660 11060881 + 5.5 NA Intergenic Intergenic -41046 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 938.666-2 chr19 41439540 41440040 + 5.33333 NA promoter-TSS (NM_001320841) promoter-TSS (NM_001320841) 122 NR_030765 55101 Hs.351099 NM_018035 ENSG00000105341 DMAC2 ATP5SL distal membrane arm assembly complex 2 protein-coding 1017 chr1 27284633 27285336 + 5.33333 NA intron (NM_001276252, intron 5 of 15) intron (NM_001276252, intron 5 of 15) -37161 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 1257.17 chr2 39058993 39059840 + 5.33333 NA intron (NM_005633, intron 2 of 22) intron (NM_005633, intron 2 of 22) 61047 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 1057.83-3 chr8 28787731 28788188 + 5.33333 NA intron (NR_026826, intron 8 of 14) intron (NR_026826, intron 8 of 14) 86458 NR_073469 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 1866.67-2 chr5 58871500 58872352 + 5.33333 NA Intergenic Intergenic 127972 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1728.83 chr11 32052023 32052775 + 5.33333 NA Intergenic Intergenic -11081 NR_120526 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 575.833 chr8 18197232 18197598 + 5.33333 NA intron (NM_001160179, intron 2 of 4) MER20|DNA|hAT-Charlie -12688 NM_001160173 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 1480.17 chr12 12334309 12334964 + 5.33333 NA intron (NM_001363613, intron 4 of 4) intron (NM_001363613, intron 4 of 4) 15606 NM_018050 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 1663.5 chr20 50987631 50988324 + 5.33333 NA Intergenic Intergenic 29159 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 1207.33 chr10 99392375 99392828 + 5.33333 NA non-coding (NR_144311, exon 11 of 11) non-coding (NR_144311, exon 11 of 11) 38023 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 1552.5 chr17 75904820 75905451 + 5.33333 NA promoter-TSS (NM_032478) promoter-TSS (NM_032478) -35 NM_032478 64978 Hs.442609 NM_032478 ENSG00000204316 MRPL38 HSPC262|L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 1079.17 chr5 115586388 115586918 + 5.33333 NA intron (NM_001164469, intron 3 of 3) intron (NM_001164469, intron 3 of 3) -15502 NR_109875 101927100 Hs.745340 NR_109874 LOC101927100 - uncharacterized LOC101927100 ncRNA 1655.17 chr17 43760289 43761014 + 5.33333 NA Intergenic Intergenic -1860 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 1368.17 chr1 212782600 212783249 + 5.33333 NA intron (NM_015471, intron 3 of 5) intron (NM_015471, intron 3 of 5) 8853 NM_001042549 25936 Hs.497692 NM_015471 ENSG00000117697 NSL1 C1orf48|DC8|MIS14 NSL1 component of MIS12 kinetochore complex protein-coding 1570 chr17 76370285 76371408 + 5.33333 NA Intergenic Intergenic -12358 NM_001355139 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 2855.67 chr14 21103333 21104759 + 5.33333 NA TTS (NM_001146683) TTS (NM_001146683) 658 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 1789.67 chr6 43174131 43174973 + 5.33333 NA intron (NM_001292001, intron 2 of 6) intron (NM_001292001, intron 2 of 6) 2156 NM_001292001 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 669.667 chr12 57583434 57583723 + 5.33333 NA intron (NM_004984, intron 28 of 28) intron (NM_004984, intron 28 of 28) -7614 NM_001146259 79837 Hs.745011 NM_024779 ENSG00000166908 PIP4K2C PIP5K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma protein-coding 2093.83 chr3 46704760 46705607 + 5.33333 NA intron (NM_147196, intron 1 of 3) intron (NM_147196, intron 1 of 3) 3850 NM_147196 259236 Hs.185777 NM_147196 ENSG00000181585 TMIE DFNB6 transmembrane inner ear protein-coding 839.167 chr18 62584266 62585060 + 5.33333 NA non-coding (NR_126534, exon 15 of 15) non-coding (NR_126534, exon 15 of 15) 61638 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 756 chr20 53939729 53940303 + 5.33333 NA Intergenic Intergenic -64307 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1508.17 chr5 73792516 73793384 + 5.33333 NA intron (NM_001177693, intron 7 of 35) intron (NM_001177693, intron 7 of 35) -20596 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 1070 chr5 7927717 7928239 + 5.33333 NA Intergenic Intergenic 58830 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 1283.17 chr5 40879345 40879850 + 5.33333 NA Intergenic Intergenic -29900 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 1116 chr6 37381448 37382057 + 5.33333 NA intron (NR_046399, intron 7 of 7) intron (NR_046399, intron 7 of 7) 27769 NM_003958 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 2600.67 chr21 30043839 30045260 + 5.33333 NA Intergenic Intergenic -104497 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 1234.17 chr1 99180163 99180751 + 5.33333 NA Intergenic Intergenic -83835 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 1704.33 chr1 160006316 160007114 + 5.33333 NA Intergenic Intergenic 25275 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 1585.67 chr12 4421163 4421950 + 5.33333 NA Intergenic L1MA5A|LINE|L1 24058 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 2465 chr21 25385782 25386771 + 5.33333 NA non-coding (NR_024027, exon 5 of 5) non-coding (NR_024027, exon 5 of 5) 45425 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 3087.5 chr11 59171148 59172092 + 5.33333 NA promoter-TSS (NM_015177) promoter-TSS (NM_015177) 190 NM_001300727 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 1519.67 chr10 115171084 115171906 + 5.33333 NA TTS (NR_074088) TTS (NR_074088) 78130 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 1634.5 chr12 120646696 120647363 + 5.33333 NA intron (NM_001033677, intron 1 of 5) intron (NM_001033677, intron 1 of 5) -3248 NM_004276 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 1406 chr1 27388347 27388977 + 5.33333 NA Intergenic Intergenic -3960 NM_005281 2827 Hs.66542 NM_005281 ENSG00000181773 GPR3 ACCA G protein-coupled receptor 3 protein-coding 2033.17 chr6 47413779 47414549 + 5.33333 NA Intergenic Intergenic -63625 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 2391.83 chr12 34218308 34218908 + 5.33333 NA Intergenic Intergenic 196112 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1546.17-2 chr2 165293455 165294360 + 5.33333 NA promoter-TSS (NM_021007) promoter-TSS (NM_021007) -148 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 1030.83 chr19 46529485 46530140 + 5.33333 NA intron (NM_001370550, intron 1 of 2) intron (NM_001370550, intron 1 of 2) -33945 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 1202.5 chr18 11937787 11938285 + 5.33333 NA Intergenic Intergenic -29719 NM_001330563 65258 Hs.712666 NM_023075 ENSG00000154889 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 1056.33-2 chr3 64484318 64484842 + 5.33333 NA Intergenic Intergenic -76766 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 1145.33-2 chr17 47946871 47947498 + 5.33333 NA 3' UTR (NM_018129, exon 7 of 7) 3' UTR (NM_018129, exon 7 of 7) 5613 NM_018129 55163 Hs.631742 NM_018129 ENSG00000108439 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 1731.17-2 chr5 157148514 157149424 + 5.33333 NA Intergenic Intergenic -6104 NM_004270 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 1339.83 chr20 31822724 31823205 + 5.33333 NA intron (NM_033118, intron 4 of 12) CpG 3589 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 2678.5 chr2 73779265 73780730 + 5.33333 NA exon (NM_003584, exon 1 of 9) exon (NM_003584, exon 1 of 9) 160 NM_003584 8446 Hs.14611 NM_003584 ENSG00000144048 DUSP11 PIR1 dual specificity phosphatase 11 protein-coding 1336.83 chr7 27576315 27576928 + 5.33333 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -39353 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 1018-2 chr19 48646276 48646843 + 5.33333 NA promoter-TSS (NM_001217) promoter-TSS (NM_001217) -372 NR_136241 770 Hs.428446 NM_001217 ENSG00000063180 CA11 CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1 carbonic anhydrase 11 protein-coding 2681 chr10 88933946 88935906 + 5.33333 NA TTS (NM_001320855) TTS (NM_001320855) 2242 NR_125373 100132116 NR_125373 ENSG00000180139 ACTA2-AS1 UC001kfo|ZXF1|uc001kfo.1 ACTA2 antisense RNA 1 ncRNA 1820 chr12 128069365 128070034 + 5.33333 NA Intergenic Intergenic -42533 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 1611.67 chr1 30929370 30930211 + 5.33333 NA Intergenic MIRc|SINE|MIR 5986 NR_033295 692235 NR_033295 SNORD103B U103B small nucleolar RNA, C/D box 103B snoRNA 2097.67 chr10 11819393 11820771 + 5.33333 NA Intergenic AluY|SINE|Alu -3274 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 1058.5 chr7 128426500 128427712 + 5.33333 NA Intergenic MER119|DNA|hAT-Charlie -17124 NM_183243 3614 Hs.654401 NM_000883 ENSG00000106348 IMPDH1 IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608 inosine monophosphate dehydrogenase 1 protein-coding 1982.67 chr7 48110090 48110741 + 5.33333 NA Intergenic Intergenic 21150 NM_001287429 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 954.333 chr1 228139677 228140174 + 5.33333 NA promoter-TSS (NM_001242839) promoter-TSS (NM_001242839) -159 NM_001242839 2987 Hs.376933 NM_000858 ENSG00000143774 GUK1 GMK guanylate kinase 1 protein-coding 1202.5-3 chr6 8982899 8983635 + 5.33333 NA Intergenic Intergenic 331058 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 1963.33 chr17 65987777 65988604 + 5.33333 NA intron (NM_001353129, intron 17 of 26) L1M3f|LINE|L1 -161647 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 906.167 chr19 29263593 29264229 + 5.33333 NA Intergenic Intergenic -50760 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1619.83 chr14 45426077 45427110 + 5.33333 NA Intergenic A-rich|Low_complexity|Low_complexity -173391 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 727 chr19 40285432 40285712 + 5.33333 NA promoter-TSS (NM_001243028) promoter-TSS (NM_001243028) -227 NM_001626 208 Hs.631535 NM_001626 ENSG00000105221 AKT2 HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA AKT serine/threonine kinase 2 protein-coding 1726 chr2 38115109 38115969 + 5.33333 NA Intergenic Intergenic -15566 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 1803.83 chr14 64983548 64984229 + 5.33333 NA intron (NM_001202559, intron 3 of 13) intron (NM_001202559, intron 3 of 13) -3007 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 2121.67 chr9 126704429 126705504 + 5.33333 NA Intergenic Intergenic 90523 NM_001174147 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 2859.34 chr1 174998448 174999659 + 5.33333 NA promoter-TSS (NM_014412) promoter-TSS (NM_014412) -382 NM_001007214 27101 Hs.508524 NM_014412 ENSG00000116161 CACYBP GIG5|PNAS-107|S100A6BP|SIP calcyclin binding protein protein-coding 1151.5 chr7 129472274 129472767 + 5.33333 NA intron (NM_020704, intron 18 of 20) intron (NM_020704, intron 18 of 20) -30011 NM_001195243 100287482 Hs.178144 NM_001195243 ENSG00000240204 SMKR1 - small lysine rich protein 1 protein-coding 1488.5 chr1 19661652 19662320 + 5.33333 NA Intergenic L1ME3Cz|LINE|L1 -2889 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 1630.83 chr2 231055960 231057147 + 5.33333 NA promoter-TSS (NR_034059) promoter-TSS (NR_034059) -311 NM_001191037 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 1822.83 chr8 66609447 66610294 + 5.33333 NA intron (NM_001294282, intron 1 of 14) MIR3|SINE|MIR 3348 NM_001080416 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 1987.5 chr9 73199851 73201421 + 5.33333 NA Intergenic Intergenic 48771 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 1591.33-2 chr3 124468141 124468816 + 5.33333 NA intron (NM_001024660, intron 25 of 59) intron (NM_001024660, intron 25 of 59) 94146 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 1449.33 chr5 174419172 174420028 + 5.33333 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 83246 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 1832 chr1 206634236 206634726 + 5.33333 NA Intergenic Intergenic -1055 NM_003582 8444 Hs.164267 NM_003582 ENSG00000143479 DYRK3 DYRK5|RED|REDK|hYAK3-2 dual specificity tyrosine phosphorylation regulated kinase 3 protein-coding 2674.67 chr1 206725115 206726865 + 5.33333 NA intron (NM_004759, intron 1 of 9) L2c|LINE|L2 41085 NM_032960 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 822.166-2 chr8 129681845 129682450 + 5.33333 NA Intergenic Intergenic -1908 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 1637.17-2 chr6 139364088 139365136 + 5.33333 NA Intergenic Intergenic 9601 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 1058.33-2 chr3 151439451 151439971 + 5.33333 NA intron (NM_178822, intron 5 of 5) intron (NM_178822, intron 5 of 5) 1069 NM_001178145 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 1901.83 chr10 52729475 52730230 + 5.33333 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 25552 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 2504 chr13 27826427 27827824 + 5.33333 NA intron (NR_047484, intron 3 of 4) intron (NR_047484, intron 3 of 4) 34642 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 891.333-3 chr19 41308658 41308918 + 5.33333 NA Intergenic Intergenic -1384 NM_052848 90324 Hs.437497 NM_052848 ENSG00000142039 CCDC97 - coiled-coil domain containing 97 protein-coding 640 chr11 20647948 20648271 + 5.33333 NA intron (NM_004211, intron 14 of 15) intron (NM_004211, intron 14 of 15) -21442 NM_001288713 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 1372.17 chr20 7375879 7376718 + 5.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 4690 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 780.833 chr11 114774327 114775036 + 5.33333 NA Intergenic Intergenic 96154 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 907.5-2 chr19 47210490 47210858 + 5.33333 NA TTS (NR_027280) TTS (NR_027280) -16268 NR_036158 100422899 NR_036158 ENSG00000265134 MIR3190 mir-3190 microRNA 3190 ncRNA 1564.5-2 chr12 58345819 58346622 + 5.33333 NA Intergenic Intergenic -245482 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 998.833-2 chr11 106087617 106088078 + 5.33333 NA intron (NM_015423, intron 2 of 5) intron (NM_015423, intron 2 of 5) -10109 NM_152433 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 1070.33 chr12 102816983 102817516 + 5.33333 NA intron (NR_033855, intron 3 of 4) Charlie2b|DNA|hAT-Charlie 7150 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 2071.33 chr21 31198046 31199290 + 5.33333 NA intron (NM_001353686, intron 12 of 27) intron (NM_001353686, intron 12 of 27) -37728 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 1540.5 chr10 74265797 74266593 + 5.33333 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 89432 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 2094.34 chr22 45863037 45864355 + 5.33333 NA Intergenic L2|LINE|L2 103172 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 726.333 chr7 106542378 106542890 + 5.33333 NA Intergenic Intergenic 118524 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 1251.5-3 chr16 59192643 59193111 + 5.33333 NA Intergenic LTR16C|LTR|ERVL -458561 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 1695.33-2 chr12 9039250 9040049 + 5.33333 NA Intergenic Intergenic 25421 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 1482 chr19 51472821 51473387 + 5.33333 NA Intergenic Intergenic -5539 NM_001278392 729767 Hs.653111 NM_001080405 ENSG00000213822 CEACAM18 - carcinoembryonic antigen related cell adhesion molecule 18 protein-coding 1711.17 chr2 211455095 211455980 + 5.33333 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 837966 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 1527.67 chr12 4848801 4849615 + 5.33333 NA intron (NM_002235, intron 1 of 1) intron (NM_002235, intron 1 of 1) 40032 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 572.167 chr3 50227389 50227568 + 5.33333 NA promoter-TSS (NR_106714) promoter-TSS (NR_106714) 42 NR_106714 102464817 NR_106714 ENSG00000275334 MIR5787 hsa-mir-5787 microRNA 5787 ncRNA 1377.17 chr12 89019123 89019726 + 5.33333 NA intron (NR_038385, intron 1 of 2) intron (NR_038385, intron 1 of 2) 268 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 1588.33-4 chr2 178414560 178415263 + 5.33333 NA intron (NR_110206, intron 1 of 2) intron (NR_110206, intron 1 of 2) 1252 NR_110206 101927027 Hs.715694 NR_110204 ENSG00000223960 CHROMR CHROME|PRKRA-AS1 cholesterol induced regulator of metabolism RNA ncRNA 1158 chr8 97553331 97554119 + 5.33333 NA Intergenic Intergenic -90459 NM_001363137 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 1209.33 chr6 165850401 165851000 + 5.33333 NA Intergenic Intergenic -136851 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 1379.17 chr10 21495426 21496049 + 5.33333 NA TTS (NR_031736) TTS (NR_031736) 904 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 1886.5 chr11 102941216 102941768 + 5.33333 NA Intergenic Intergenic 14240 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 1103.33-2 chr7 137605868 137606292 + 5.33333 NA intron (NM_001321710, intron 10 of 32) L1MA4A|LINE|L1 240252 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 2985.67 chr19 38930137 38931167 + 5.33333 NA promoter-TSS (NM_033363) promoter-TSS (NM_033363) -56 NM_033362 6183 Hs.411125 NM_021107 ENSG00000128626 MRPS12 MPR-S12|MT-RPS12|RPMS12|RPS12|RPSM12 mitochondrial ribosomal protein S12 protein-coding 1069.17-2 chr3 134479549 134479940 + 5.33333 NA intron (NM_001242375, intron 2 of 2) intron (NM_001242375, intron 2 of 2) -5980 NM_001042384 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 1770.83 chr3 36958280 36959187 + 5.33333 NA Intergenic Intergenic -13679 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 1969 chr8 140831026 140831720 + 5.33333 NA intron (NM_001352746, intron 4 of 30) intron (NM_001352746, intron 4 of 30) -98720 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 744.667 chr10 103781470 103781943 + 5.33333 NA intron (NM_014631, intron 2 of 13) intron (NM_014631, intron 2 of 13) 34927 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 1009-2 chr15 94412696 94413359 + 5.33333 NA intron (NM_001159643, intron 16 of 19) intron (NM_001159643, intron 16 of 19) 57097 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 1601 chr14 65163878 65164533 + 5.33333 NA Intergenic L2a|LINE|L2 58142 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 1183.83 chr18 8480283 8480948 + 5.33333 NA Intergenic Intergenic -113581 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 1395 chr16 55464964 55465551 + 5.33333 NA Intergenic Intergenic -2960 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 1878.5 chr16 84622064 84623258 + 5.33333 NA Intergenic AluJr|SINE|Alu -4583 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 1334.83 chr3 117997315 117998166 + 5.33333 NA Intergenic Intergenic -306815 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 1622.17 chr12 12376574 12377213 + 5.33333 NA intron (NM_001300742, intron 2 of 3).2 intron (NM_001300742, intron 2 of 3).2 19815 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 492 chr10 101041140 101041472 + 5.33333 NA TTS (NR_157572) TTS (NR_157572) 10067 NM_030971 81855 Hs.283844 NM_030971 ENSG00000107819 SFXN3 BA108L7.2|SFX3|SLC56A3 sideroflexin 3 protein-coding 1476.83 chr1 114346370 114346834 + 5.33333 NA Intergenic Intergenic 164601 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 1670.67 chr17 76005526 76006040 + 5.33333 NA non-coding (NR_037709, exon 10 of 10) non-coding (NR_037709, exon 10 of 10) 4877 NM_001258 1018 Hs.706766 NM_001258 ENSG00000250506 CDK3 - cyclin dependent kinase 3 protein-coding 991.666 chr11 88016149 88016808 + 5.33333 NA Intergenic Intergenic 158965 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 1361 chr8 80997905 80999071 + 5.33333 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 113580 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 1203.33-2 chr18 7022281 7023084 + 5.33333 NA intron (NM_005559, intron 19 of 62) intron (NM_005559, intron 19 of 62) 68005 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 708.166 chr17 2786219 2786577 + 5.33333 NA intron (NM_001330058, intron 1 of 24) intron (NM_001330058, intron 1 of 24) 9640 NM_001330058 23108 Hs.499659 NM_015085 ENSG00000132359 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 1480 chr11 77126986 77127714 + 5.33333 NA promoter-TSS (NM_001369365) promoter-TSS (NM_001369365) -896 NM_001369365 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 948.834 chr3 98812573 98813227 + 5.33333 NA intron (NM_080927, intron 9 of 15) intron (NM_080927, intron 9 of 15) 49593 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 1184 chr9 15134934 15135605 + 5.33333 NA Intergenic Intergenic 114949 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 1480-2 chr5 80091593 80092318 + 5.33333 NA Intergenic Intergenic -8290 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 1634 chr16 84276984 84277883 + 5.33333 NA Intergenic Intergenic -17445 NM_001282466 58189 Hs.36688 NM_021197 ENSG00000103175 WFDC1 PS20 WAP four-disulfide core domain 1 protein-coding 3200.5 chr7 1176115 1177461 + 5.33333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 16003 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 1096.17 chr2 216516509 216517180 + 5.33333 NA Intergenic Intergenic 18000 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 1286.33 chr7 34320688 34321393 + 5.33333 NA Intergenic Intergenic -337178 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 1375.33 chr19 40139565 40140217 + 5.33333 NA Intergenic MLT1F|LTR|ERVL-MaLR -48948 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 854 chr1 161792594 161793192 + 5.33333 NA intron (NM_007348, intron 6 of 15) intron (NM_007348, intron 6 of 15) 26573 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 2283.67 chr14 60331139 60332563 + 5.33333 NA Intergenic Intergenic 8655 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 1249 chr11 111878311 111879489 + 5.33333 NA promoter-TSS (NM_001330371) promoter-TSS (NM_001330371) 265 NM_138378 91893 Hs.697132 NM_138378 ENSG00000255561 FDXACB1 hCG_2033039 ferredoxin-fold anticodon binding domain containing 1 protein-coding 1137.5 chr12 30807393 30807913 + 5.33333 NA Intergenic L1M3f|LINE|L1 11972 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 1404.67 chr10 43461818 43462336 + 5.33333 NA intron (NM_001355446, intron 2 of 4) L2|LINE|L2 24966 NM_001355444 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 2308.67 chr12 12915853 12916746 + 5.33333 NA TTS (NR_030345) TTS (NR_030345) 470 NR_030345 693199 NR_030345 ENSG00000283759 MIR614 MIRN614|hsa-mir-614 microRNA 614 ncRNA 854.166-2 chr7 23277325 23277593 + 5.33333 NA Intergenic MER5A|DNA|hAT-Charlie -21880 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 1874.67-2 chr9 89575868 89576898 + 5.33333 NA Intergenic Intergenic -28629 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 1324.67 chr10 98045709 98046877 + 5.33333 NA Intergenic L2c|LINE|L2 -15465 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 1409.17 chr5 55936047 55936664 + 5.33333 NA non-coding (NR_120480, exon 18 of 18) non-coding (NR_120480, exon 18 of 18) 58608 NM_001364277 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 1879 chr20 6142167 6142830 + 5.33333 NA Intergenic Intergenic -18954 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 1924.33-2 chr8 87581792 87582515 + 5.33333 NA Intergenic Intergenic 291862 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 1572.83-2 chr1 231756156 231757213 + 5.33333 NA intron (NM_001164540, intron 4 of 10) MIR3|SINE|MIR 61833 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 632-2 chr10 91006202 91006643 + 5.33333 NA Intergenic LTR104_Mam|LTR|Gypsy -26744 NR_134319 105378430 Hs.512240 NR_134319 LOC105378430 - uncharacterized LOC105378430 ncRNA 1119.17 chr10 99612192 99612846 + 5.33333 NA intron (NM_031212, intron 3 of 3) intron (NM_031212, intron 3 of 3) 7920 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 1964.33 chr10 102501932 102503111 + 5.33333 NA intron (NM_005736, intron 1 of 10) CpG 191 NM_005736 10121 Hs.153961 NM_005736 ENSG00000138107 ACTR1A ARP1|Arp1A|CTRN1 actin related protein 1A protein-coding 2098.67 chr7 92424268 92425079 + 5.33333 NA intron (NR_145992, intron 5 of 9) intron (NR_145992, intron 5 of 9) 12641 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 700.667 chr10 59181806 59182256 + 5.33333 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 4564 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 1498.33 chr16 85114668 85115470 + 5.33333 NA Intergenic Intergenic -2597 NM_198491 339145 Hs.125713 NM_198491 ENSG00000153789 FAM92B - family with sequence similarity 92 member B protein-coding 956.166-2 chr8 67490422 67490701 + 5.33333 NA intron (NM_020361, intron 6 of 10) intron (NM_020361, intron 6 of 10) 146727 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 1971.17 chr9 124852954 124853812 + 5.33333 NA promoter-TSS (NM_001276374) promoter-TSS (NM_001276374) -34 NM_001276374 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 1823.33 chr11 36746801 36747572 + 5.33333 NA Intergenic Intergenic -148907 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 1388.83 chr9 99184482 99184992 + 5.33333 NA Intergenic Intergenic 37205 NR_024532 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2 alpha-1,3/1,6-mannosyltransferase protein-coding 1388.67 chr11 103682008 103682555 + 5.33333 NA Intergenic Intergenic -167625 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 1283.5 chr10 102072781 102073479 + 5.33333 NA Intergenic Intergenic 7763 NM_024747 79803 Hs.125133 NM_024747 ENSG00000166189 HPS6 BLOC2S3 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 protein-coding 1500.17 chr9 89278931 89279436 + 5.33333 NA Intergenic Intergenic -32012 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 2226.33 chr1 178310164 178311056 + 5.33333 NA intron (NM_170692, intron 3 of 17) intron (NM_170692, intron 3 of 17) -30841 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 748-3 chr12 19757241 19757551 + 5.33333 NA Intergenic Intergenic -257289 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 1948.83 chr1 154559401 154560107 + 5.33333 NA Intergenic Intergenic -1092 NM_017582 55585 Hs.607928 NM_017582 ENSG00000160714 UBE2Q1 GTAP|NICE-5|NICE5|PRO3094|UBE2Q ubiquitin conjugating enzyme E2 Q1 protein-coding 2251.67-2 chr5 83717743 83718850 + 5.33333 NA intron (NM_001884, intron 1 of 4) intron (NM_001884, intron 1 of 4) 2559 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 2583.5 chr22 27879582 27880512 + 5.33333 NA intron (NM_001284278, intron 7 of 11) MIRb|SINE|MIR 39167 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 1006 chr4 121192124 121192993 + 5.33333 NA intron (NM_001128843, intron 2 of 12) intron (NM_001128843, intron 2 of 12) 24069 NM_001128843 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 1028.33-3 chr20 41734361 41734847 + 5.33333 NA Intergenic Intergenic -116227 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 759.5 chr10 99620509 99621003 + 5.33333 NA promoter-TSS (NM_031212) promoter-TSS (NM_031212) -317 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 838.5-2 chr12 50039115 50039458 + 5.33333 NA Intergenic Intergenic -13729 NM_001320002 29127 Hs.505469 NM_013277 ENSG00000161800 RACGAP1 CYK4|HsCYK-4|ID-GAP|MgcRacGAP Rac GTPase activating protein 1 protein-coding 1285.83-2 chr2 97806547 97807218 + 5.33333 NA intron (NM_015348, intron 19 of 40) intron (NM_015348, intron 19 of 40) 72476 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 1839.83 chr14 54175240 54176116 + 5.33333 NA Intergenic Intergenic -218787 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 1744.67 chr9 36190066 36190892 + 5.33333 NA promoter-TSS (NM_001184762) promoter-TSS (NM_001184762) -377 NM_001184762 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 1063 chrX 65451597 65452097 + 5.33333 NA Intergenic Intergenic -36888 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 788 chr12 113980283 113980929 + 5.33333 NA Intergenic Intergenic -14281 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 791.834 chr12 52372276 52372784 + 5.33333 NA Intergenic Intergenic -5049 NM_002283 3891 Hs.182507 NM_002283 ENSG00000135443 KRT85 ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5 keratin 85 protein-coding 2659 chr12 12032832 12034098 + 5.33333 NA Intergenic Intergenic -16396 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 1358-2 chr12 19186708 19187323 + 5.33333 NA intron (NM_019012, intron 3 of 25) intron (NM_019012, intron 3 of 25) -18310 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 1148.33 chr4 53197110 53197663 + 5.33333 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 168675 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 2212.33 chr20 46752123 46753057 + 5.33333 NA Intergenic Intergenic 42941 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 1456.67-2 chr5 91419385 91420109 + 5.33333 NA non-coding (NR_027435, exon 3 of 3) non-coding (NR_027435, exon 3 of 3) -36430 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 1491.67 chr8 80023524 80024072 + 5.33333 NA intron (NM_014018, intron 1 of 2) intron (NM_014018, intron 1 of 2) 6461 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 1941.33 chr7 100725137 100726051 + 5.33333 NA Intergenic AluSx1|SINE|Alu 5126 NM_000799 2056 Hs.2303 NM_000799 ENSG00000130427 EPO DBAL|ECYT5|EP|MVCD2 erythropoietin protein-coding 862.833-2 chr9 126491492 126491872 + 5.33333 NA intron (NM_033446, intron 9 of 9) intron (NM_033446, intron 9 of 9) -81178 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-coding repressor of NFAT ncRNA 1968 chr16 65117670 65118772 + 5.16667 NA intron (NM_001330576, intron 1 of 11) intron (NM_001330576, intron 1 of 11) 3842 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 1493.33 chr14 45990152 45991024 + 5.16667 NA Intergenic Intergenic -73571 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 729.5 chr2 168759352 168759806 + 5.16667 NA intron (NM_001256126, intron 8 of 10) intron (NM_001256126, intron 8 of 10) 26850 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 822.333 chr17 48791134 48791457 + 5.16667 NA intron (NM_001130918, intron 9 of 15) intron (NM_001130918, intron 9 of 15) 3029 NM_173623 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 1110.83 chr1 50704193 50704790 + 5.16667 NA intron (NM_007051, intron 7 of 18) intron (NM_007051, intron 7 of 18) 255776 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 1311.33 chr11 59753518 59754346 + 5.16667 NA Intergenic AluJb|SINE|Alu -1444 NM_004177 6809 Hs.180711 NM_004177 ENSG00000166900 STX3 STX3A syntaxin 3 protein-coding 2005.33 chr2 45494167 45495316 + 5.16667 NA intron (NM_018079, intron 14 of 20) intron (NM_018079, intron 14 of 20) 116526 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 1231.83-2 chr4 86922229 86922636 + 5.16667 NA Intergenic LTR41C|LTR|ERVL 12418 NR_038841 100506746 Hs.657766 NR_038841 AFF1-AS1 - AFF1 antisense RNA 1 ncRNA 1130.33-5 chr9 19048910 19049428 + 5.16667 NA promoter-TSS (NM_006570) promoter-TSS (NM_006570) 185 NM_001287049 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 1352.33 chr1 44835638 44836236 + 5.16667 NA intron (NM_003738, intron 2 of 21) intron (NM_003738, intron 2 of 21) 7007 NM_001166292 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 3475.83 chr8 134685096 134686225 + 5.16667 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 10895 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 3304.5 chr9 34701059 34702758 + 5.16667 NA Intergenic Intergenic 8228 NM_002989 6366 Hs.57907 NM_002989 ENSG00000137077 CCL21 6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 C-C motif chemokine ligand 21 protein-coding 1251.5-2 chr12 54596245 54596866 + 5.16667 NA Intergenic Intergenic -7896 NM_006741 5502 Hs.505662 NM_006741 ENSG00000135447 PPP1R1A I1|IPP1 protein phosphatase 1 regulatory inhibitor subunit 1A protein-coding 1396-2 chr8 11553865 11554367 + 5.16667 NA intron (NM_001330465, intron 5 of 11).2 Charlie22a|DNA|hAT-Charlie -22419 NR_040035 83655 Hs.742430 NR_040035 ENSG00000170983 LINC00208 C8orf14|NCRNA00208|VIR35 long intergenic non-protein coding RNA 208 ncRNA 702.5 chr6 123316691 123317154 + 5.16667 NA intron (NM_006073, intron 23 of 40) intron (NM_006073, intron 23 of 40) -122682 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 1874.33 chr15 97909105 97910025 + 5.16667 NA Intergenic Intergenic -35136 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 1171.83-2 chr2 188524058 188525175 + 5.16667 NA intron (NM_016315, intron 5 of 11) (TT)n|Simple_repeat|Simple_repeat 227124 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 2099.83 chr8 143974123 143975460 + 5.16667 NA intron (NM_000445, intron 2 of 32) CpG-27770 -1262 NM_201378 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 1858 chr3 181700175 181701308 + 5.16667 NA intron (NR_075089, intron 3 of 3) intron (NR_075089, intron 3 of 3) -11184 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 546.667-2 chr20 44116775 44117140 + 5.16667 NA intron (NM_020433, intron 3 of 5) intron (NM_020433, intron 3 of 5) 70231 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 1295.33-2 chr4 81052374 81053028 + 5.16667 NA intron (NM_001201, intron 2 of 2) intron (NM_001201, intron 2 of 2) 21993 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 770.334-3 chr5 113678886 113679355 + 5.16667 NA Intergenic Intergenic 165426 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 1206.67 chr3 62188596 62189285 + 5.16667 NA intron (NM_002841, intron 8 of 29) intron (NM_002841, intron 8 of 29) 130007 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 922-3 chr9 71284962 71285743 + 5.16667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 161619 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 1387.17-2 chr5 91101151 91102371 + 5.16667 NA intron (NR_003149, intron 86 of 89) intron (NR_003149, intron 86 of 89) 212641 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 778-4 chr5 44952006 44952541 + 5.16667 NA Intergenic L1MB8|LINE|L1 143326 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 1134 chr3 120622918 120623237 + 5.16667 NA Intergenic HERVIP10FH-int|LTR|ERV1 26741 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 1321.67-2 chr2 18387291 18388240 + 5.16667 NA Intergenic Intergenic 172888 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 1962.5 chr22 26364027 26364873 + 5.16667 NA intron (NM_001184777, intron 12 of 14) AluJb|SINE|Alu -64810 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 1974.83 chr16 71412133 71413540 + 5.16667 NA intron (NR_146574, intron 2 of 2) intron (NR_146574, intron 2 of 2) 13628 NR_146574 105371333 Hs.578738 NR_146574 ENSG00000261348 LINC02136 - long intergenic non-protein coding RNA 2136 ncRNA 1493 chr17 19514024 19514613 + 5.16667 NA Intergenic Charlie2b|DNA|hAT-Charlie -19536 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 1668.5 chr2 158753457 158754685 + 5.16667 NA Intergenic Intergenic -19069 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 1727.83 chr2 43609228 43610133 + 5.16667 NA Intergenic Intergenic -13634 NM_022065 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 1160.67-3 chr15 98421587 98422199 + 5.16667 NA promoter-TSS (NR_146567) promoter-TSS (NR_146567) -895 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 1984.5 chr20 57345745 57346993 + 5.16667 NA Intergenic Intergenic -4886 NM_003610 8480 Hs.371698 NM_003610 ENSG00000101146 RAE1 Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1 ribonucleic acid export 1 protein-coding 1793.67-2 chr6 52020911 52021581 + 5.16667 NA intron (NM_138694, intron 33 of 66) intron (NM_138694, intron 33 of 66) 66367 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 1256.33 chr7 55415000 55415996 + 5.16667 NA intron (NM_018697, intron 6 of 8) intron (NM_018697, intron 6 of 8) 50050 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 1495.33 chr11 69888168 69889022 + 5.16667 NA Intergenic Intergenic -69179 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 1798.33 chr10 80662582 80663503 + 5.16667 NA Intergenic Intergenic 13245 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 2090.83 chr14 45253165 45254294 + 5.16667 NA promoter-TSS (NM_018353) promoter-TSS (NM_018353) -527 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 593.667 chr1 37990124 37990447 + 5.16667 NA promoter-TSS (NM_001320830) promoter-TSS (NM_001320830) -263 NM_001320830 10946 Hs.77897 NM_006802 ENSG00000183431 SF3A3 PRP9|PRPF9|SAP61|SF3a60 splicing factor 3a subunit 3 protein-coding 1788.5-2 chr3 90091182 90092037 + 5.16667 NA Intergenic Intergenic 983988 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1955 chr4 186038081 186038874 + 5.16667 NA Intergenic Intergenic -30678 NM_003265 7098 Hs.657724 NM_003265 ENSG00000164342 TLR3 CD283|IIAE2 toll like receptor 3 protein-coding 1335.5 chr2 204145008 204145705 + 5.16667 NA Intergenic Intergenic 208608 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 1226.17 chr1 16187554 16188268 + 5.16667 NA Intergenic Intergenic 24741 NM_153213 128272 Hs.591532 NM_153213 ENSG00000142632 ARHGEF19 WGEF Rho guanine nucleotide exchange factor 19 protein-coding 2134.5 chr10 76984530 76985576 + 5.16667 NA intron (NM_001322838, intron 19 of 29) intron (NM_001322838, intron 19 of 29) 97009 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 833.334 chr5 147627858 147628502 + 5.16667 NA intron (NM_001282282, intron 15 of 20) FAM|SINE|Alu 68186 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 750.167-2 chr2 26785750 26786294 + 5.16667 NA promoter-TSS (NM_001809) promoter-TSS (NM_001809) 7 NM_001042426 1058 Hs.1594 NM_001809 ENSG00000115163 CENPA CENP-A|CenH3 centromere protein A protein-coding 1125.83 chr19 47963115 47963637 + 5.16667 NA Intergenic Intergenic 7694 NR_024217 100170218 Hs.723092 NR_024217 SNAR-C2 - small NF90 (ILF3) associated RNA C2 snRNA 1725.33-2 chr17 55356408 55357181 + 5.16667 NA Intergenic Intergenic 65041 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 2038.83 chr11 64304087 64304906 + 5.16667 NA intron (NM_001039496, intron 4 of 4) intron (NM_001039496, intron 4 of 4) -1028 NM_004451 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding 1221.67-2 chr19 1848811 1849291 + 5.16667 NA promoter-TSS (NM_020695) promoter-TSS (NM_020695) -568 NM_020695 57455 Hs.192477 NM_020695 ENSG00000079313 REXO1 ELOABP1|EloA-BP1|REX1|TCEB3BP1 RNA exonuclease 1 homolog protein-coding 2532.83 chr4 38856684 38858049 + 5.16667 NA promoter-TSS (NM_006068) promoter-TSS (NM_006068) -549 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 1055.17-2 chr3 149273057 149273631 + 5.16667 NA Intergenic Intergenic -51515 NR_046371 1356 Hs.558314 NM_000096 ENSG00000047457 CP CP-2 ceruloplasmin protein-coding 1636.83 chr8 78720151 78721075 + 5.16667 NA TTS (NM_016010) TTS (NM_016010) 3761 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 1359 chr10 78047085 78047849 + 5.16667 NA intron (NM_001142285, intron 4 of 4) intron (NM_001142285, intron 4 of 4) 13604 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 797.167 chr1 112369771 112370168 + 5.16667 NA Intergenic Intergenic -26245 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 1344 chr1 65059781 65060358 + 5.16667 NA intron (NM_001321853, intron 2 of 26) intron (NM_001321853, intron 2 of 26) -1561 NR_029516 406893 NR_029516 ENSG00000199135 MIR101-1 MIRN101-1|mir-101-1 microRNA 101-1 ncRNA 820.167 chr7 80659381 80660017 + 5.16667 NA intron (NM_001371079, intron 4 of 13) intron (NM_001371079, intron 4 of 13) 13046 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 1949.67 chr12 119544691 119545840 + 5.16667 NA Intergenic Intergenic -48509 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 1636 chr18 6886259 6887302 + 5.16667 NA intron (NM_001010000, intron 10 of 16) MIR|SINE|MIR 43089 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 1182.33 chr8 3284088 3285006 + 5.16667 NA intron (NM_033225, intron 25 of 69) intron (NM_033225, intron 25 of 69) -556096 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 1230.5 chr9 35789826 35790656 + 5.16667 NA Intergenic Intergenic -2168 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 1910.5 chr20 8721663 8723096 + 5.16667 NA exon (NM_015192, exon 15 of 32) exon (NM_015192, exon 15 of 32) -108806 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 1407.33 chr1 181424834 181425612 + 5.16667 NA Intergenic Intergenic -58294 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 2086.67 chr4 65007105 65008480 + 5.16667 NA Intergenic MIRc|SINE|MIR -3292 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 1343.83 chr19 34145730 34146365 + 5.16667 NA Intergenic Intergenic -26457 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 1463.17 chr12 3073315 3073809 + 5.16667 NA Intergenic Intergenic -3793 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 1725.33 chr16 78437007 78437820 + 5.16667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 337759 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 1098 chr11 15100850 15101557 + 5.16667 NA Intergenic ORSL-2a|DNA|hAT-Tip100 -11221 NM_001031853 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 1112.5 chr10 97791735 97792435 + 5.16667 NA Intergenic Intergenic -20086 NM_003015 6425 Hs.279565 NM_003015 ENSG00000120057 SFRP5 SARP3 secreted frizzled related protein 5 protein-coding 1463.5 chr1 47726198 47726873 + 5.16667 NA Intergenic Intergenic 270850 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 1961.83 chr6 153947766 153948629 + 5.16667 NA Intergenic Intergenic -62299 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 1662.83 chr1 48497887 48499194 + 5.16667 NA Intergenic MamGypLTR3|LTR|Gypsy -26332 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 1446.67 chr2 73163383 73164340 + 5.16667 NA Intergenic Intergenic -38713 NM_001134462 344022 Hs.694384 NM_001134462 ENSG00000214513 NOTO - notochord homeobox protein-coding 1841.83 chr8 90000214 90001831 + 5.16667 NA promoter-TSS (NM_001359) promoter-TSS (NM_001359) -330 NM_001330575 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 1009.33-4 chr7 103297108 103297457 + 5.16667 NA promoter-TSS (NM_004279) promoter-TSS (NM_004279) -153 NM_004279 9512 Hs.184211 NM_004279 ENSG00000105819 PMPCB Beta-MPP|MPP11|MPPB|MPPP52|P-52 peptidase, mitochondrial processing beta subunit protein-coding 2013-2 chr11 86041596 86042681 + 5.16667 NA intron (NM_001206947, intron 1 of 18) intron (NM_001206947, intron 1 of 18) 26946 NM_001008660 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 1334.33-2 chrX 101415276 101416005 + 5.16667 NA Intergenic Intergenic -2638 NR_028407 100131755 Hs.729062 NM_152583 ENSG00000196440 ARMCX4 CXorf35|GASP4 armadillo repeat containing X-linked 4 protein-coding 1089 chr17 56715587 56716369 + 5.16667 NA Intergenic MIRb|SINE|MIR 117942 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 602.833 chr2 73177473 73177820 + 5.16667 NA Intergenic CpG -24928 NM_001134462 344022 Hs.694384 NM_001134462 ENSG00000214513 NOTO - notochord homeobox protein-coding 1941.17 chr8 127733265 127734675 + 5.16667 NA promoter-TSS (NR_117102) promoter-TSS (NR_117102) -3 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 1314-2 chr20 35144824 35145575 + 5.16667 NA intron (NM_001145025, intron 1 of 9) intron (NM_001145025, intron 1 of 9) 2137 NR_026728 55741 Hs.720177 NM_018217 ENSG00000088298 EDEM2 C20orf31|C20orf49|bA4204.1 ER degradation enhancing alpha-mannosidase like protein 2 protein-coding 1323.5 chr1 44652782 44653476 + 5.16667 NA TTS (NM_001300746) TTS (NM_001300746) 17927 NR_145816 109623472 NR_145816 SNORD145 - small nucleolar RNA, C/D box 145 snoRNA 1603.83 chr10 95430105 95430771 + 5.16667 NA intron (NM_001034955, intron 4 of 30) AluJb|SINE|Alu 10742 NM_001290298 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 1643.67 chr5 111531325 111531946 + 5.16667 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -19038 NM_001308056 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 1103.5 chr1 157090034 157090937 + 5.16667 NA Intergenic MER20|DNA|hAT-Charlie 9323 NM_001004341 440695 Hs.127138 NM_001004341 ENSG00000253831 ETV3L - ETS variant 3 like protein-coding 947.833 chr3 36729403 36729700 + 5.16667 NA intron (NM_033403, intron 2 of 4) intron (NM_033403, intron 2 of 4) 10310 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 2079 chr20 5448045 5449126 + 5.16667 NA Intergenic Intergenic -2837 NR_038240 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 754-5 chr7 87236884 87237353 + 5.16667 NA Intergenic Intergenic -16531 NM_001329474 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 1026.83 chr1 22963977 22964912 + 5.16667 NA intron (NM_001289974, intron 3 of 7) MLT1H2|LTR|ERVL-MaLR 8422 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 2191.5 chr14 53306421 53307262 + 5.16667 NA Intergenic Intergenic 153487 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 1095.5-3 chr5 76601413 76601723 + 5.16667 NA intron (NM_006633, intron 11 of 35) intron (NM_006633, intron 11 of 35) 7401 NR_134278 101929109 Hs.665172 NR_134278 ENSG00000249713 LOC101929109 - uncharacterized LOC101929109 ncRNA 1080.5-3 chr3 192812353 192813188 + 5.16667 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) -85229 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 2339.67 chr4 64158275 64159336 + 5.16667 NA Intergenic Intergenic 250645 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 818.333-2 chr6 142942776 142943254 + 5.16667 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 2161 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 1245.33 chr14 88667144 88667707 + 5.16667 NA intron (NM_183387, intron 21 of 42) intron (NM_183387, intron 21 of 42) 73005 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 1920.67 chr9 75186501 75187571 + 5.16667 NA Intergenic Intergenic 98522 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 927.333 chr14 60247765 60248319 + 5.16667 NA intron (NM_177952, intron 1 of 5) intron (NM_177952, intron 1 of 5) -1179 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 1995.17 chr4 40926889 40928154 + 5.16667 NA intron (NM_173075, intron 9 of 16) AluJb|SINE|Alu -70329 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 1349.67-2 chr5 115246395 115247151 + 5.16667 NA intron (NM_005023, intron 2 of 8) MER5B|DNA|hAT-Charlie 16104 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 2894.17 chr8 87559904 87561108 + 5.16667 NA Intergenic Intergenic 313509 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 844.667 chr1 17054049 17054581 + 5.16667 NA promoter-TSS (NM_003000) promoter-TSS (NM_003000) -145 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 1698.5 chr8 125696633 125697465 + 5.16667 NA Intergenic Intergenic 254148 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 962.666-2 chr22 31665403 31666192 + 5.16667 NA Intergenic Intergenic -3233 NM_001326411 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 966.166-2 chr6 134123721 134124195 + 5.16667 NA Intergenic Intergenic -6278 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 1437.33 chr1 41268088 41268801 + 5.16667 NA Intergenic Intergenic -26138 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 708.5 chr13 75687373 75687598 + 5.16667 NA intron (NM_001306080, intron 1 of 30) intron (NM_001306080, intron 1 of 30) 51155 NM_001306080 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 1738.5 chr2 204325155 204326232 + 5.16667 NA Intergenic Intergenic -219782 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 2056.83 chr1 87292434 87293293 + 5.16667 NA Intergenic Intergenic -36017 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 892.834 chr13 110915015 110915490 + 5.16667 NA promoter-TSS (NR_104586) promoter-TSS (NR_104586) -183 NM_017664 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 666.834 chr1 14731920 14732531 + 5.16667 NA intron (NM_201628, intron 1 of 14) MER119|DNA|hAT-Charlie 133508 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 1151.67 chr2 46464007 46465409 + 5.16667 NA Intergenic Intergenic -14857 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000284701 TMEM247 - transmembrane protein 247 protein-coding 957.833-2 chr6 11585380 11586005 + 5.16667 NA Intergenic Intergenic 47943 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 1221.67-4 chr7 15015839 15016681 + 5.16667 NA Intergenic Intergenic -41402 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 987.166 chr1 88607928 88608319 + 5.16667 NA intron (NR_110682, intron 1 of 3) L1ME4a|LINE|L1 -76021 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 1113.5 chr11 40293479 40294545 + 5.16667 NA promoter-TSS (NR_047673) promoter-TSS (NR_047673) -882 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1377.5-2 chr8 121710468 121711891 + 5.16667 NA Intergenic Intergenic -69739 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 1376-3 chr20 4085085 4085829 + 5.16667 NA Intergenic Intergenic -63322 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 1676.17 chr18 58180724 58181711 + 5.16667 NA intron (NM_001144965, intron 2 of 30) intron (NM_001144965, intron 2 of 30) -14188 NM_001144970 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 1053.33 chr9 131178236 131178529 + 5.16667 NA exon (NM_005085, exon 24 of 36) exon (NM_005085, exon 24 of 36) -11757 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 1695.33-3 chr6 137641324 137642107 + 5.16667 NA Intergenic Intergenic -23931 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 666-2 chr7 22488986 22489311 + 5.16667 NA intron (NM_001164460, intron 4 of 4) intron (NM_001164460, intron 4 of 4) 11134 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 1735.5 chr10 77173516 77174453 + 5.16667 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 33153 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 864.333-2 chrX 11532962 11533358 + 5.16667 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) -105342 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 1151.33 chr11 82681946 82682447 + 5.16667 NA Intergenic HUERS-P3b-int|LTR|ERV1 51668 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 1714.5 chr3 85576002 85577064 + 5.16667 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 71474 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 904.667-2 chr5 7754822 7755431 + 5.16667 NA intron (NM_020546, intron 15 of 24) intron (NM_020546, intron 15 of 24) 96007 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 921.333-2 chr17 43878483 43879039 + 5.16667 NA intron (NM_001278371, intron 11 of 11) intron (NM_001278371, intron 11 of 11) 21863 NM_001278376 4355 Hs.514208 NM_005374 ENSG00000108852 MPP2 DLG2 membrane palmitoylated protein 2 protein-coding 2123.83 chr10 101161447 101162254 + 5.16667 NA Intergenic Intergenic -14472 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 456.167-2 chr12 103560622 103560838 + 5.16667 NA TTS (NR_110103) TTS (NR_110103) 12936 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LINC02401 - long intergenic non-protein coding RNA 2401 ncRNA 950.333-2 chr7 86469585 86470416 + 5.16667 NA Intergenic Intergenic -173909 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 873.667 chr10 77004687 77005540 + 5.16667 NA intron (NM_001161352, intron 18 of 27) intron (NM_001161352, intron 18 of 27) 117069 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 979.667-3 chr13 36420315 36420617 + 5.16667 NA Intergenic Intergenic -11364 NM_001111047 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 1454.5-2 chr9 36008412 36009260 + 5.16667 NA Intergenic Tigger2|DNA|TcMar-Tigger -28077 NM_001316348 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 875.667-2 chr15 79184541 79184815 + 5.16667 NA Intergenic Intergenic -25110 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 1266.67-2 chr11 75867574 75868260 + 5.16667 NA intron (NM_003369, intron 3 of 14) Kanga1|DNA|TcMar-Tc2 52707 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 1036-3 chr3 193665016 193665637 + 5.16667 NA intron (NM_130831, intron 24 of 27) L1ME4a|LINE|L1 -37994 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 1327.83 chr3 141303185 141304003 + 5.16667 NA Intergenic Intergenic -20592 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 1049.67-3 chr2 166128117 166128504 + 5.16667 NA promoter-TSS (NM_001353954) promoter-TSS (NM_001353954) -290 NR_148667 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 1171.33 chr5 56900759 56901261 + 5.16667 NA Intergenic Intergenic -8250 NR_136556 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 1605.33 chr10 52644609 52645121 + 5.16667 NA intron (NR_155748, intron 1 of 2) Tigger16a|DNA|TcMar-Tigger 110539 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 1187.83-2 chr5 137320210 137320650 + 5.16667 NA intron (NM_004598, intron 2 of 10) L1M3d|LINE|L1 178896 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 1156.67 chr14 74860863 74861461 + 5.16667 NA intron (NM_001243007, intron 1 of 3) intron (NM_001243007, intron 1 of 3) 2672 NM_001080408 283571 Hs.675293 NM_001080408 ENSG00000119608 PROX2 PROX-2 prospero homeobox 2 protein-coding 1305.83-2 chr3 53299320 53299964 + 5.16667 NA intron (NM_001290207, intron 4 of 7) intron (NM_001290207, intron 4 of 7) 33485 NR_145715 109617024 NR_145715 ENSG00000207109 SNORD38C - small nucleolar RNA, C/D box 38C snoRNA 1908.33 chr2 11477874 11478512 + 5.16667 NA Intergenic Intergenic -12016 NM_001278278 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 1369 chr10 84613545 84613956 + 5.16667 NA Intergenic Intergenic 188581 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 1332.17-2 chr9 101530079 101530891 + 5.16667 NA Intergenic Intergenic -3368 NM_019592 56254 Hs.729085 NM_019592 ENSG00000155827 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20 protein-coding 918-2 chr2 169528124 169528818 + 5.16667 NA TTS (NM_001322046) TTS (NM_001322046) 18769 NM_006063 10324 Hs.50550 NM_006063 ENSG00000239474 KLHL41 KBTBD10|Krp1|SARCOSIN kelch like family member 41 protein-coding 876.167 chr3 179563315 179563688 + 5.16667 NA intron (NM_178042, intron 1 of 13) CpG 575 NM_004301 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 1358.17-2 chr19 42439916 42440790 + 5.16667 NA intron (NM_198477, intron 1 of 3) intron (NM_198477, intron 1 of 3) 2593 NR_133910 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 1215.17 chr11 81237067 81237680 + 5.16667 NA Intergenic Intergenic -474570 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 1328.5-2 chr8 120939095 120939759 + 5.16667 NA Intergenic THE1C|LTR|ERVL-MaLR -127381 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 1143-2 chr9 124773982 124774867 + 5.16667 NA Intergenic L2b|LINE|L2 -2709 NM_182487 169611 Hs.357004 NM_182487 ENSG00000185585 OLFML2A PRO34319 olfactomedin like 2A protein-coding 1155.33 chr19 48152438 48152907 + 5.16667 NA intron (NR_135500, intron 5 of 27) MER119|DNA|hAT-Charlie 17672 NR_135501 3978 Hs.1770 NM_000234 ENSG00000105486 LIG1 - DNA ligase 1 protein-coding 641.167 chr17 79087718 79087972 + 5.16667 NA 3' UTR (NM_001042573, exon 14 of 14) 3' UTR (NM_001042573, exon 14 of 14) 12908 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 922.334-2 chr8 116765823 116766449 + 5.16667 NA promoter-TSS (NM_032334) promoter-TSS (NM_032334) -388 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 1000.5 chr20 62301907 62302261 + 5.16667 NA promoter-TSS (NM_175573) promoter-TSS (NM_175573) -812 NM_001281438 11047 Hs.90107 NM_007002 ENSG00000130706 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 892.166 chrX 101287645 101287862 + 5.16667 NA intron (NM_024885, intron 1 of 12) intron (NM_024885, intron 1 of 12) 3581 NM_001168474 54457 Hs.223806 NM_024885 ENSG00000102387 TAF7L CT40|TAF2Q TATA-box binding protein associated factor 7 like protein-coding 1775.5 chr17 30093298 30094349 + 5.16667 NA intron (NM_198529, intron 22 of 22) intron (NM_198529, intron 22 of 22) -22984 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 1659.16 chr1 241531035 241532535 + 5.16667 NA promoter-TSS (NM_003679) promoter-TSS (NM_003679) -593 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 1353.67 chr10 61284203 61285021 + 5.16667 NA Intergenic Intergenic -168027 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 938 chr12 6753153 6754122 + 5.16667 NA promoter-TSS (NM_005439) promoter-TSS (NM_005439) -496 NR_026581 8079 Hs.524214 NM_005439 ENSG00000089693 MLF2 NTN4 myeloid leukemia factor 2 protein-coding 831.667 chr1 75991448 75991742 + 5.16667 NA Intergenic Intergenic -19729 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 670.166 chr10 15725688 15726053 + 5.16667 NA Intergenic Intergenic -5535 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 1178 chr20 59455487 59456255 + 5.16667 NA Intergenic Intergenic -121638 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1846.33 chr2 152925635 152927154 + 5.16667 NA Intergenic LTR50|LTR|ERVL 207757 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 1412.67 chr2 98569007 98569613 + 5.16667 NA intron (NM_001351428, intron 22 of 24) L2c|LINE|L2 39202 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 1093.17-2 chr11 117817614 117818316 + 5.16667 NA promoter-TSS (NM_001367905) promoter-TSS (NM_001367905) -451 NM_001367905 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 953 chr17 30476849 30477407 + 5.16667 NA promoter-TSS (NM_001007024) promoter-TSS (NM_001007024) -280 NM_004871 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 1590 chr1 202236004 202236594 + 5.16667 NA intron (NM_001017404, intron 4 of 15) intron (NM_001017404, intron 4 of 15) 22144 NM_001017404 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 1417.17 chr19 42438402 42438889 + 5.16667 NA intron (NM_198477, intron 1 of 3) L1MC4a|LINE|L1 4301 NR_133910 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 1280.5 chr14 67137747 67138193 + 5.16667 NA intron (NM_001024218, intron 16 of 21) intron (NM_001024218, intron 16 of 21) -51470 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 2989 chr10 52307030 52308661 + 5.16667 NA intron (NR_038277, intron 3 of 5) intron (NR_038277, intron 3 of 5) 6283 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 1218.5-2 chr4 20422001 20422572 + 5.16667 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) 30097 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 716.667-2 chr15 76185619 76186251 + 5.16667 NA intron (NM_152335, intron 8 of 10) MIR3|SINE|MIR -4449 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 836.334 chr18 10520038 10520525 + 5.16667 NA Intergenic Intergenic -5746 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 2716.33 chr12 64801414 64802629 + 5.16667 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) 21266 NM_001330188 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 1042.83-3 chr18 21997718 21997991 + 5.16667 NA Intergenic Intergenic -166448 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 1324 chr4 24979855 24980497 + 5.16667 NA promoter-TSS (NM_173463) promoter-TSS (NM_173463) 28 NM_173463 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 2381.83 chr12 129911175 129912084 + 5.16667 NA Intergenic Intergenic -7604 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 1865.67 chr16 82263091 82264124 + 5.16667 NA Intergenic Intergenic -93383 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 1499.17 chr11 62394173 62395266 + 5.16667 NA Intergenic Intergenic -24314 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 1417.83 chr3 51669230 51669904 + 5.16667 NA TTS (NM_001322256) TTS (NM_001322256) -1608 NM_001243727 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264, ER-phagy receptor protein-coding 1456.83 chr7 85553897 85554892 + 5.16667 NA Intergenic Intergenic 133272 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 947.834 chr16 48353521 48354037 + 5.16667 NA 3' UTR (NM_001300948, exon 14 of 14) 3' UTR (NM_001300948, exon 14 of 14) 12108 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 1571.83 chr3 43769365 43770028 + 5.16667 NA Intergenic Intergenic -78102 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 1334.33 chr22 20784182 20785033 + 5.16667 NA intron (NM_000185, intron 3 of 4) MIRb|SINE|MIR 10494 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 1021.33 chr11 64847226 64847658 + 5.16667 NA Intergenic MIRc|SINE|MIR -2789 NM_017525 55561 Hs.293590 NM_017525 ENSG00000171219 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma protein-coding 1497.67 chr16 82230175 82231448 + 5.16667 NA Intergenic Intergenic -60587 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 777.333 chr10 36881006 36881520 + 5.16667 NA Intergenic Intergenic -244594 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 1349.67 chr18 34787835 34788581 + 5.16667 NA intron (NM_001198945, intron 4 of 10) intron (NM_001198945, intron 4 of 10) -29754 NM_001198943 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 928.667-3 chr7 135645466 135645739 + 5.16667 NA intron (NM_015135, intron 41 of 42) intron (NM_015135, intron 41 of 42) -16912 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 692 chr11 8603854 8604374 + 5.16667 NA Intergenic L1MC4|LINE|L1 -9886 NM_001352395 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 1468.33 chr7 31736322 31736820 + 5.16667 NA Intergenic Intergenic 49356 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 1872.67 chr12 124036352 124037191 + 5.16667 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 63556 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 1734 chr20 2351201 2352269 + 5.16667 NA Intergenic Intergenic -29166 NM_001254734 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 1623.33 chr12 27732593 27733636 + 5.16667 NA intron (NM_001190864, intron 5 of 6) intron (NM_001190864, intron 5 of 6) 22282 NM_021821 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding 1357.17 chr12 15269084 15269709 + 5.16667 NA Intergenic Intergenic -47979 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 2022.5 chr14 36068809 36069905 + 5 NA Intergenic Intergenic -1070 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 1844 chr4 69896130 69897146 + 5 NA Intergenic Intergenic -34430 NM_001890 1446 Hs.3155 NM_001890 ENSG00000126545 CSN1S1 CASA|CSN1 casein alpha s1 protein-coding 898.334 chr10 118423893 118424318 + 5 NA Intergenic Intergenic 66997 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 1236.33 chr1 19715313 19716013 + 5 NA intron (NM_001349112, intron 12 of 14) intron (NM_001349112, intron 12 of 14) 50788 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 1533.33 chr17 45197714 45198476 + 5 NA intron (NR_147507, intron 2 of 2) intron (NR_147507, intron 2 of 2) 23670 NR_147507 339192 Hs.560498 NR_147507 ENSG00000267121 LOC339192 - uncharacterized LOC339192 ncRNA 1502.83 chr21 42117156 42117836 + 5 NA intron (NM_001004416, intron 14 of 22) intron (NM_001004416, intron 14 of 22) -8962 NR_027243 150147 Hs.558646 NM_152507 ENSG00000184385 UMODL1-AS1 C21orf128 UMODL1 antisense RNA 1 ncRNA 1085.17-2 chr19 4633350 4633889 + 5 NA Intergenic Intergenic -5897 NM_152362 126282 Hs.465643 NM_152362 ENSG00000185361 TNFAIP8L1 TIPE1 TNF alpha induced protein 8 like 1 protein-coding 1148.17-3 chr17 41666921 41667753 + 5 NA Intergenic L2b|LINE|L2 -21548 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 1536.67 chr11 32176132 32176804 + 5 NA Intergenic Intergenic -32556 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 993.5 chr16 53945693 53946154 + 5 NA intron (NM_001363894, intron 9 of 9) intron (NM_001363894, intron 9 of 9) -93470 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 2364.83 chr8 123763225 123764016 + 5 NA Intergenic Intergenic -4819 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 1705.33 chr14 20327187 20327739 + 5 NA promoter-TSS (NR_003693) promoter-TSS (NR_003693) -924 NR_003693 100113391 NR_003693 SNORD126 MIR1201|MIRN1201 small nucleolar RNA, C/D box 126 snoRNA 1348.5-2 chr3 73100868 73101485 + 5 NA Intergenic Intergenic 39517 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 1100.67-3 chr5 54905910 54906406 + 5 NA Intergenic Intergenic 79435 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 1579 chr6 154154191 154154855 + 5 NA TTS (NM_001130700) TTS (NM_001130700) 64761 NM_001285528 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 1648.33 chr5 151115167 151116121 + 5 NA intron (NM_001193544, intron 19 of 24) L2b|LINE|L2 26040 NM_001193544 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 920.666 chr4 82360505 82361003 + 5 NA intron (NM_001003810, intron 1 of 6) intron (NM_001003810, intron 1 of 6) 13237 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 1532.83 chr12 48987880 48988768 + 5 NA Intergenic Intergenic 10002 NM_005430 7471 Hs.248164 NM_005430 ENSG00000125084 WNT1 BMND16|INT1|OI15 Wnt family member 1 protein-coding 1012-3 chr7 98168580 98169075 + 5 NA intron (NM_014916, intron 6 of 13) intron (NM_014916, intron 6 of 13) -43427 NM_177455 168620 Hs.511979 NM_177455 ENSG00000180535 BHLHA15 BHLHB8|MIST1 basic helix-loop-helix family member a15 protein-coding 1767.5-2 chr5 141567363 141568280 + 5 NA intron (NM_005219, intron 17 of 27) intron (NM_005219, intron 17 of 27) 9510 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 1595.17 chr12 128259157 128259932 + 5 NA Intergenic Intergenic -7859 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 620.667 chr2 20411374 20412057 + 5 NA Intergenic L1M2a|LINE|L1 -35359 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 1309.17 chr17 43673767 43674436 + 5 NA Intergenic Intergenic -12179 NM_004527 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 866.001 chr7 98745484 98746254 + 5 NA Intergenic Intergenic 124145 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 1269.83 chr1 247681048 247681697 + 5 NA Intergenic Intergenic -8331 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 1524 chr11 86869698 86870623 + 5 NA intron (NR_120592, intron 2 of 2) intron (NR_120592, intron 2 of 2) -12206 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 949.5 chr1 176073320 176074092 + 5 NA intron (NM_022457, intron 11 of 19) intron (NM_022457, intron 11 of 19) -105166 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 835 chr2 205766698 205767048 + 5 NA intron (NM_201266, intron 15 of 16) intron (NM_201266, intron 15 of 16) 84372 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 1035.33-2 chr2 219277441 219277918 + 5 NA Intergenic MLT1N2|LTR|ERVL-MaLR -1687 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 855.333-2 chr8 130691904 130692641 + 5 NA Intergenic L1P4d|LINE|L1 -248598 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 1640.5 chr17 68972005 68972883 + 5 NA Intergenic Intergenic -17052 NM_007168 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 1167.5 chr14 38867710 38868202 + 5 NA intron (NR_039982, intron 2 of 4) intron (NR_039982, intron 2 of 4) -14640 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 1960.17 chr17 66165373 66166576 + 5 NA intron (NM_001353129, intron 4 of 26) intron (NM_001353129, intron 4 of 26) 25918 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 882.166 chr2 95022242 95022907 + 5 NA Intergenic Intergenic -3081 NM_022438 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 727.001 chr8 23287828 23288345 + 5 NA promoter-TSS (NM_001136108) promoter-TSS (NM_001136108) -6 NM_001301650 203069 Hs.458644 NM_001136108 ENSG00000104679 R3HCC1 - R3H domain and coiled-coil containing 1 protein-coding 1414.17 chr20 45293906 45294576 + 5 NA intron (NM_003833, intron 9 of 10) MIRb|SINE|MIR -12599 NM_001281448 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 435.5-2 chr11 113532864 113533272 + 5 NA Intergenic Intergenic -57670 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 1625.33-3 chr8 144900061 144900696 + 5 NA promoter-TSS (NM_001363103) promoter-TSS (NM_001363103) -73 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 1374.5 chr5 144203548 144204323 + 5 NA intron (NM_020768, intron 2 of 3) intron (NM_020768, intron 2 of 3) -1456 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 2094.5 chr20 44684926 44685715 + 5 NA Intergenic Intergenic -13581 NR_034104 79015 Hs.671450 NM_024049 ENSG00000283440 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 611.001 chr14 53010234 53010622 + 5 NA Intergenic L1ME4b|LINE|L1 -59331 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 1883.17 chr16 6642967 6644281 + 5 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -130185 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 1362-2 chr3 28328562 28329197 + 5 NA intron (NM_022461, intron 6 of 7) intron (NM_022461, intron 6 of 7) -19842 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 1799.5 chr8 63390850 63391690 + 5 NA Intergenic Intergenic -74579 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 639.167 chr14 75709162 75709474 + 5 NA intron (NM_015072, intron 9 of 31) intron (NM_015072, intron 9 of 31) 48072 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 1400.83-2 chr7 35519968 35520852 + 5 NA Intergenic Intergenic 174725 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 995.333-2 chr11 47153240 47153892 + 5 NA intron (NM_001003677, intron 4 of 8) MIRb|SINE|MIR 23313 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 870.5-2 chr5 56314756 56314982 + 5 NA Intergenic Intergenic -81539 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 1283.33 chr7 99313055 99313539 + 5 NA Intergenic Intergenic -12576 NM_001190996 10552 Hs.124126 NM_006409 ENSG00000241685 ARPC1A Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L actin related protein 2/3 complex subunit 1A protein-coding 1413.17 chr1 117895632 117896371 + 5 NA intron (NM_001135589, intron 8 of 12) L2c|LINE|L2 33620 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 1517.33 chr5 36739452 36740145 + 5 NA Intergenic L2c|LINE|L2 133192 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 1637 chr1 167058951 167059595 + 5 NA intron (NM_005814, intron 4 of 6) intron (NM_005814, intron 4 of 6) 31104 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 493.834 chr17 5439123 5439319 + 5 NA promoter-TSS (NM_001212) promoter-TSS (NM_001212) -66 NM_001212 708 Hs.555866 NM_001212 ENSG00000108561 C1QBP COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32 complement C1q binding protein protein-coding 1235.33-2 chr9 101449196 101449739 + 5 NA Intergenic CpG -13693 NM_000035 229 Hs.530274 NM_000035 ENSG00000136872 ALDOB ALDB|ALDO2 aldolase, fructose-bisphosphate B protein-coding 1918.16 chr18 3998329 3999679 + 5 NA intron (NR_102696, intron 4 of 4) L1MC5|LINE|L1 36651 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 889-2 chr4 140609976 140610635 + 5 NA Intergenic Intergenic 32775 NR_077215 644962 Hs.676500 NR_077215 TNRC18P1 - trinucleotide repeat containing 18 pseudogene 1 pseudo 2152.5 chr8 64381691 64382644 + 5 NA non-coding (NR_109792, exon 3 of 3) non-coding (NR_109792, exon 3 of 3) 3018 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 1050.83 chr17 28041138 28041772 + 5 NA Intergenic A-rich|Low_complexity|Low_complexity -1222 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 1408.33-2 chr7 31744045 31744889 + 5 NA Intergenic Intergenic 57252 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 2011.67 chr3 63193622 63194395 + 5 NA Intergenic Intergenic -84300 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 1844.17 chr8 124592853 124593770 + 5 NA intron (NM_001282971, intron 3 of 14) L1M5|LINE|L1 54188 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 1194.83 chr12 9925967 9926501 + 5 NA intron (NM_207375, intron 2 of 4) intron (NM_207375, intron 2 of 4) 6136 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 1891 chr15 68306250 68307044 + 5 NA intron (NM_001004439, intron 28 of 29) intron (NM_001004439, intron 28 of 29) 28902 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 1479.5 chr7 13276634 13277504 + 5 NA Intergenic Intergenic 589436 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 1702.17 chr1 179002609 179003711 + 5 NA Intergenic Intergenic -22644 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 1329.34 chr5 35777586 35778565 + 5 NA intron (NM_024867, intron 29 of 36) intron (NM_024867, intron 29 of 36) -78816 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 1432.67 chr12 9330388 9331366 + 5 NA Intergenic L1ME3A|LINE|L1 -36587 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 772.167-2 chr17 28749909 28750500 + 5 NA 3' UTR (NM_004295, exon 7 of 7) 3' UTR (NM_004295, exon 7 of 7) 6193 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding 1023-3 chr7 93231791 93232334 + 5 NA promoter-TSS (NM_017667) promoter-TSS (NM_017667) 136 NM_001346642 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 1330.17-3 chr8 142726551 142727081 + 5 NA promoter-TSS (NM_001363000) promoter-TSS (NM_001363000) 157 NR_038925 100288181 Hs.716823 NR_038925 ENSG00000253741 LNCOC1 Lnc-OC1 lncRNA associated with ovarian cancer 1 ncRNA 2212.67 chr11 47552774 47553807 + 5 NA promoter-TSS (NM_006560) promoter-TSS (NM_006560) -158 NM_006560 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 1982.5 chr17 43846239 43847376 + 5 NA promoter-TSS (NM_001168324) promoter-TSS (NM_001168324) -369 NM_001168322 146894 Hs.147313 NM_145273 ENSG00000161649 CD300LG CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4 CD300 molecule like family member g protein-coding 718.333-2 chr11 58567878 58568153 + 5 NA intron (NM_001143995, intron 2 of 8) BLACKJACK|DNA|hAT-Blackjack 7902 NM_004811 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 1130.67-2 chr6 127302583 127303195 + 5 NA intron (NM_001002030, intron 5 of 5) intron (NM_001002030, intron 5 of 5) 36051 NM_001242845 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 1183.5 chr1 16440322 16440665 + 5 NA promoter-TSS (NM_001145278) promoter-TSS (NM_001145278) -179 NM_001145277 55707 Hs.437385 NM_018090 ENSG00000157191 NECAP2 - NECAP endocytosis associated 2 protein-coding 628.999 chr12 53743742 53744027 + 5 NA Intergenic Intergenic 7951 NR_104333 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 602.667 chr2 231677665 231678037 + 5 NA Intergenic Intergenic -30674 NM_002823 5757 Hs.459927 NM_002823 ENSG00000187514 PTMA TMSA prothymosin alpha protein-coding 1344.67 chr22 28019787 28020698 + 5 NA intron (NM_001145418, intron 13 of 22) intron (NM_001145418, intron 13 of 22) -99630 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 1037.67-2 chr21 43646697 43647137 + 5 NA intron (NM_007031, intron 3 of 8) intron (NM_007031, intron 3 of 8) 12571 NM_007031 11077 Hs.406157 NM_007031 ENSG00000160207 HSF2BP - heat shock transcription factor 2 binding protein protein-coding 910.167-2 chr9 33473907 33474364 + 5 NA promoter-TSS (NM_022917) promoter-TSS (NM_022917) -192 NM_139235 65083 Hs.493709 NM_022917 ENSG00000165271 NOL6 NRAP|UTP22|bA311H10.1 nucleolar protein 6 protein-coding 1150.83 chr21 33605660 33606362 + 5 NA intron (NM_145858, intron 6 of 12) intron (NM_145858, intron 6 of 12) -17327 NM_017613 29980 Hs.436341 NM_017613 ENSG00000159147 DONSON B17|C21orf60|MIMIS|MISSLA downstream neighbor of SON protein-coding 978.001 chr10 100046185 100046470 + 5 NA intron (NM_001308, intron 8 of 8) intron (NM_001308, intron 8 of 8) 35542 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 1623.17-2 chr16 78122375 78123413 + 5 NA intron (NM_001291997, intron 3 of 7) AluSz|SINE|Alu 23240 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 1544.5 chr4 48127419 48128440 + 5 NA intron (NM_003328, intron 1 of 14) intron (NM_003328, intron 1 of 14) 6321 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 1234.33 chr6 27188502 27189068 + 5 NA Intergenic HERVKC4-int|LTR|ERVK 41159 NR_036096 100422934 NR_036096 ENSG00000265565 MIR3143 mir-3143 microRNA 3143 ncRNA 802.5 chr10 33010289 33010657 + 5 NA Intergenic Intergenic -52243 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 1328.5-3 chr8 141174835 141175362 + 5 NA intron (NR_148197, intron 14 of 23) intron (NR_148197, intron 14 of 23) 46509 NM_001352891 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 1065-3 chr9 38362980 38363631 + 5 NA Intergenic Intergenic -29397 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 2023.83 chr2 172931209 172932903 + 5 NA intron (NM_001282901, intron 1 of 24) intron (NM_001282901, intron 1 of 24) 3851 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 1085.17 chr15 76139430 76140095 + 5 NA intron (NM_152335, intron 3 of 10) intron (NM_152335, intron 3 of 10) 41724 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 1578.17 chr13 110819260 110820158 + 5 NA non-coding (NR_158538, exon 2 of 2) non-coding (NR_158538, exon 2 of 2) 6004 NR_158538 105370362 NR_158538 LOC105370362 - uncharacterized LOC105370362 ncRNA 1430.67 chr1 209860051 209860729 + 5 NA Intergenic Intergenic 32418 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 386.5-12 chrX 100636917 100637113 + 5 NA promoter-TSS (NM_003270) promoter-TSS (NM_003270) 89 NM_001278742 7105 Hs.43233 NM_003270 ENSG00000000003 TSPAN6 T245|TM4SF6|TSPAN-6 tetraspanin 6 protein-coding 840.834 chr13 78121423 78122099 + 5 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 66906 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 1737.33 chr1 152347107 152347693 + 5 NA intron (NR_103779, intron 2 of 2) intron (NR_103779, intron 2 of 2) 10332 NR_103779 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 2115.17 chr6 49606623 49607867 + 5 NA intron (NM_000324, intron 7 of 9) intron (NM_000324, intron 7 of 9) 29629 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 1854 chr3 50245746 50246848 + 5 NA promoter-TSS (NM_001166425) promoter-TSS (NM_001166425) -613 NM_001166425 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 1547.83 chr1 61049588 61050337 + 5 NA Intergenic Intergenic -27265 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 1222.67-2 chr2 192162167 192162857 + 5 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 32421 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 609.167 chr11 35630037 35630229 + 5 NA Intergenic Intergenic 11673 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 1623.17 chr15 66946458 66947441 + 5 NA intron (NR_135687, intron 1 of 2) intron (NR_135687, intron 1 of 2) 9566 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 1916 chr2 212567413 212568238 + 5 NA Intergenic Intergenic -29023 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 1276.33 chr3 89851692 89852662 + 5 NA Intergenic L3|LINE|CR1 744556 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 639.667 chr10 121823873 121824529 + 5 NA intron (NM_001001976, intron 10 of 11) intron (NM_001001976, intron 10 of 11) 103830 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 859.166 chr12 26701404 26702259 + 5 NA intron (NM_002223, intron 9 of 56) intron (NM_002223, intron 9 of 56) 131363 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 1457.83-2 chr6 83066997 83067702 + 5 NA promoter-TSS (NM_001199942) promoter-TSS (NM_001199942) -317 NM_001199942 23033 Hs.520246 NM_015018 ENSG00000083097 DOP1A DOP1|DOPEY1|KIAA1117|dJ202D23.2 DOP1 leucine zipper like protein A protein-coding 1422.33 chr3 188954413 188955234 + 5 NA Intergenic Intergenic -7184 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 1417.67 chr15 94670166 94670835 + 5 NA Intergenic Intergenic -184863 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 1373.67 chr3 167684410 167685028 + 5 NA intron (NM_145859, intron 8 of 8) intron (NM_145859, intron 8 of 8) -26796 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 933.333-2 chr10 43689845 43690263 + 5 NA Intergenic CpG -41173 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 2158.33 chr12 7638244 7639676 + 5 NA Intergenic HUERS-P3-int|LTR|ERV1 26948 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 1327 chr1 152034500 152034992 + 5 NA intron (NM_005620, intron 1 of 2) intron (NM_005620, intron 1 of 2) 2258 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 685.833-2 chr5 132820265 132820576 + 5 NA Intergenic Intergenic 5890 NM_133456 134549 Hs.519574 NM_133456 ENSG00000164403 SHROOM1 APXL2 shroom family member 1 protein-coding 956.334 chr1 39098225 39098893 + 5 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 14392 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 1578.83 chr17 64028643 64029493 + 5 NA Intergenic Intergenic -8434 NM_001099787 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 1400.17-2 chr6 70371072 70371963 + 5 NA Intergenic Intergenic -22685 NR_125857 101928353 NR_125857 EVADR - uncharacterized LOC101928353 ncRNA 1192.17 chr7 88242699 88243517 + 5 NA Intergenic Intergenic -16115 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 1560.5 chr7 30938600 30939383 + 5 NA Intergenic Intergenic -24962 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 958-2 chr15 66287620 66287936 + 5 NA Intergenic Intergenic -5531 NM_001323937 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 1458.5 chr1 114282373 114283290 + 5 NA Intergenic (TTG)n|Simple_repeat|Simple_repeat -128962 NM_001366224 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 1080.67 chr1 45493088 45493768 + 5 NA TTS (NR_033297) TTS (NR_033297) -2265 NM_007170 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 564-9 chr19 9930841 9931253 + 5 NA intron (NM_058164, intron 1 of 5) intron (NM_058164, intron 1 of 5) 5468 NM_058164 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 1045 chr9 98791240 98791740 + 5 NA intron (NM_173551, intron 1 of 14) intron (NM_173551, intron 1 of 14) 5065 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 675.667 chr1 209202975 209203364 + 5 NA Intergenic Intergenic -122287 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 1338 chr1 40143736 40144831 + 5 NA Intergenic MIRb|SINE|MIR -17104 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 949.167-2 chr8 6816204 6816803 + 5 NA intron (NM_207411, intron 5 of 6).2 intron (NM_207411, intron 5 of 6).2 19021 NM_207411 389610 Hs.558840 NM_207411 ENSG00000275591 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK related 5 protein-coding 1382 chr16 86760907 86761878 + 5 NA Intergenic Intergenic 39301 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 838 chr20 50071227 50071875 + 5 NA Intergenic Intergenic -29922 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 885.667 chr13 104571559 104572143 + 5 NA Intergenic Intergenic -894016 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 1051.5 chr11 19071016 19071820 + 5 NA Intergenic Intergenic -10701 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 1587-3 chr12 42024089 42024962 + 5 NA Intergenic Intergenic 120349 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 870 chr11 113796786 113797226 + 5 NA TTS (NM_001346261) TTS (NM_001346261) 17210 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 757.833 chr1 209565991 209566530 + 5 NA Intergenic Intergenic -17454 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 1403.5 chr2 115165341 115166021 + 5 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 3526 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 725.333 chr17_KI270729v1_random 27560 27876 + 5 NA NA (GAATG)n|Satellite|Satellite NA NA 997.501 chr3 185308100 185308699 + 5 NA intron (NM_001242317, intron 2 of 12) L1M3d|LINE|L1 25438 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 1595.17-2 chr2 118855311 118856265 + 5 NA Intergenic CpG -7605 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 1097 chr10 101843627 101843889 + 5 NA promoter-TSS (NM_014591) promoter-TSS (NM_014591) 42 NM_173193 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 1455 chr17 47949015 47949833 + 5 NA TTS (NM_018129) TTS (NM_018129) 7853 NM_018129 55163 Hs.631742 NM_018129 ENSG00000108439 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 1022 chr14 64429704 64430566 + 5 NA intron (NM_005956, intron 12 of 27) intron (NM_005956, intron 12 of 27) -35364 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 936.501 chr20 45311535 45312083 + 5 NA intron (NM_014276, intron 4 of 11) CpG -3280 NM_003833 8785 Hs.278489 NM_003833 ENSG00000124159 MATN4 - matrilin 4 protein-coding 1169.33-3 chr7 25862179 25862855 + 5 NA Intergenic Intergenic -72398 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 1455.33 chr1 204398581 204399257 + 5 NA Intergenic Intergenic 12898 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 1153 chr5 123344785 123345569 + 5 NA 3' UTR (NM_001166226, exon 20 of 20) 3' UTR (NM_001166226, exon 20 of 20) 78415 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 1288 chr11 22304114 22305100 + 5 NA Intergenic Intergenic -33774 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 913.499 chr6 130872209 130872697 + 5 NA intron (NM_001350307, intron 12 of 18) intron (NM_001350307, intron 12 of 18) 45048 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 455.833-4 chr8 54551595 54551881 + 5 NA Intergenic Intergenic -64358 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 1829.17 chr14 67943634 67944492 + 5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 120471 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 454.333-2 chr17 34361613 34361950 + 5 NA intron (NM_002981, intron 2 of 2) intron (NM_002981, intron 2 of 2) 1452 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 1261 chr2 216114387 216115406 + 5 NA intron (NM_021141, intron 2 of 20) MER50C|LTR|ERV1 5548 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 1333-2 chr6 139369402 139369866 + 5 NA Intergenic Intergenic 4579 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 1000.17 chr11 19557408 19558109 + 5 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -17552 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 920.667 chr11 111446533 111447198 + 5 NA Intergenic MER33|DNA|hAT-Charlie -28679 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 1045.67 chr3 24679973 24680890 + 5 NA Intergenic Intergenic -148892 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 1026.17-2 chr22 21646642 21647329 + 5 NA Intergenic Intergenic 4683 NM_022044 23753 Hs.303116 NM_022044 ENSG00000128228 SDF2L1 - stromal cell derived factor 2 like 1 protein-coding 610.333 chr6 35449377 35450010 + 5 NA Intergenic MER91B|DNA|hAT-Tip100 -2668 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE FA complementation group E protein-coding 937.333 chr3 185768187 185768708 + 5 NA promoter-TSS (NR_049838).6 promoter-TSS (NR_049838).6 -543 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 2385.83 chr14 57317049 57317816 + 5 NA Intergenic Intergenic 48461 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 475.667 chr10 111598453 111598759 + 5 NA Intergenic Intergenic 484315 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 1435.33 chr11 87290093 87290734 + 5 NA intron (NR_033149, intron 5 of 13) intron (NR_033149, intron 5 of 13) 252479 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 1999 chr10 33008219 33009957 + 5 NA Intergenic Intergenic -50858 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 2170.5 chr2 227890230 227891039 + 5 NA intron (NM_178821, intron 3 of 12) intron (NM_178821, intron 3 of 12) 19003 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 1293 chr4 16025928 16026981 + 5 NA intron (NM_001371408, intron 4 of 24) intron (NM_001371408, intron 4 of 24) 49664 NM_001145849 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 1409.67-2 chr14 61456333 61457198 + 5 NA intron (NM_006255, intron 7 of 13) intron (NM_006255, intron 7 of 13) 113429 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 919.333-2 chr15 88246732 88247234 + 5 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) -5747 NR_038229 283738 Hs.578429 NR_038229 ENSG00000260305 NTRK3-AS1 - NTRK3 antisense RNA 1 ncRNA 1459-3 chr5 60677452 60678306 + 5 NA intron (NM_001145208, intron 2 of 9) intron (NM_001145208, intron 2 of 9) 22287 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 908.667 chr2 30115663 30116245 + 5 NA Intergenic Intergenic -31053 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 1475.5-4 chr9 105841908 105842662 + 5 NA Intergenic Intergenic 147744 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 1232.5 chr12 27821190 27821603 + 5 NA Intergenic Intergenic 41163 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 1864.33 chr12 91326370 91327059 + 5 NA Intergenic Intergenic -143897 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 1884.33 chr12 27383959 27384800 + 5 NA intron (NM_001248003, intron 3 of 14) intron (NM_001248003, intron 3 of 14) 51543 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 749.5 chr17 79874345 79874778 + 5 NA Intergenic L1MD2|LINE|L1 -35121 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 914.5 chr8 109325781 109326294 + 5 NA intron (NM_032869, intron 1 of 9) intron (NM_032869, intron 1 of 9) 3896 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 724.333-4 chrX 66110273 66110704 + 5 NA Intergenic Intergenic -52183 NM_138737 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 1369.5 chr2 105235389 105236126 + 5 NA Intergenic Intergenic -5986 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 1418.17 chr19 7829608 7830167 + 5 NA promoter-TSS (NM_145245) promoter-TSS (NM_145245) -331 NM_145245 115704 Hs.26870 NM_145245 ENSG00000142459 EVI5L - ecotropic viral integration site 5 like protein-coding 1838.5 chr11 32792637 32793532 + 5 NA intron (NM_001008391, intron 1 of 17) intron (NM_001008391, intron 1 of 17) 1574 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 1285.5-2 chr17 57671843 57672388 + 5 NA intron (NM_138962, intron 11 of 13) intron (NM_138962, intron 11 of 13) -63703 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 1761.17 chr17 69394351 69395156 + 5 NA Intergenic AluSx1|SINE|Alu -19944 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 1324.33 chr6 110528167 110528644 + 5 NA Intergenic Intergenic -51792 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 639-4 chrX 104166235 104166459 + 5 NA promoter-TSS (NM_207318) promoter-TSS (NM_207318) -106 NM_207318 139231 Hs.496535 NM_207318 ENSG00000123575 FAM199X CXorf39 family with sequence similarity 199, X-linked protein-coding 1093.5 chr5 174910154 174910589 + 5 NA Intergenic Intergenic 85360 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 1098-2 chr8 71828044 71828508 + 5 NA Intergenic Intergenic -14847 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 1250.17 chr17 32676248 32676854 + 5 NA intron (NM_015194, intron 16 of 21) intron (NM_015194, intron 16 of 21) 189558 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 1547.5 chr4 164731819 164732468 + 5 NA Intergenic Intergenic -21988 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 913.833 chr1 73998518 73998960 + 5 NA Intergenic Intergenic 199437 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 486.667-5 chr7 22103649 22103959 + 5 NA Intergenic Intergenic 89941 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 1190.83-2 chr10 76036284 76037007 + 5 NA intron (NM_001305581, intron 3 of 6) intron (NM_001305581, intron 3 of 6) 253884 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 789.666 chr14 96424341 96424830 + 5 NA intron (NM_001350890, intron 5 of 16) intron (NM_001350890, intron 5 of 16) 32457 NM_001350891 122481 Hs.667462 NM_152327 ENSG00000140057 AK7 AK 7|SPGF27 adenylate kinase 7 protein-coding 1106.5-3 chr16 84952155 84952643 + 5 NA Intergenic Intergenic 59136 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 984.667 chr11 59919246 59919586 + 5 NA Intergenic A-rich|Low_complexity|Low_complexity -23463 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 2385.33 chr15 45714297 45715705 + 5 NA intron (NR_135680, intron 1 of 4) intron (NR_135680, intron 1 of 4) 9806 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 702.001-3 chr8 66667278 66667539 + 5 NA promoter-TSS (NM_025054) promoter-TSS (NM_025054) -177 NM_025054 80124 Hs.632066 NM_025054 ENSG00000175073 VCPIP1 DUBA3|VCIP135 valosin containing protein interacting protein 1 protein-coding 972.667-2 chr9 109244469 109244686 + 5 NA intron (NM_019114, intron 14 of 25) AluSx|SINE|Alu 76387 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 768.5-2 chr8 69946117 69946558 + 5 NA Intergenic Intergenic -111359 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 1383 chr4 180664717 180665578 + 5 NA Intergenic Intergenic 494002 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 1059 chr4 72469075 72469546 + 5 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 99911 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 1419.83 chr3 88004863 88005689 + 5 NA Intergenic Intergenic 22700 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 1161.17-2 chr2 227884004 227884839 + 5 NA intron (NM_001330004, intron 2 of 13) L1MDb|LINE|L1 12790 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 1453.67 chr5 16790915 16791469 + 5 NA intron (NM_012334, intron 4 of 40) intron (NM_012334, intron 4 of 40) 145096 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 1620.17 chr2 74919504 74920589 + 5 NA intron (NR_125792, intron 1 of 4) CpG 10915 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 863.834 chr5 36265375 36265670 + 5 NA intron (NM_001323278, intron 4 of 13) intron (NM_001323278, intron 4 of 13) -23243 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 1968.67 chr22 22720054 22720593 + 5 NA Intergenic Intergenic 74011 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 1138 chr1 225474686 225475366 + 5 NA Intergenic MIR|SINE|MIR -46171 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 1302.5 chr14 30004857 30005559 + 5 NA Intergenic Intergenic -77361 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 1305 chr1 186985703 186986304 + 5 NA intron (NM_024420, intron 17 of 17) intron (NM_024420, intron 17 of 17) -106839 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 1574.33 chr2 162890280 162891184 + 5 NA Intergenic Intergenic -51965 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 1106.83-2 chr9 35646576 35646956 + 5 NA non-coding (NR_135130, exon 2 of 2) non-coding (NR_135130, exon 2 of 2) 496 NR_135130 101926948 Hs.639412 NR_135130 LOC101926948 - uncharacterized LOC101926948 ncRNA 1667.33 chr22 39496250 39496855 + 5 NA Intergenic MIR|SINE|MIR -3548 NM_001304564 54471 Hs.728085 NM_013298 ENSG00000100335 MIEF1 AltMIEF1|HSU79252|MID51|MIEF1-MP|SMCR7L|dJ1104E15.3 mitochondrial elongation factor 1 protein-coding 1016.83-3 chr3 45656618 45657347 + 5 NA intron (NM_014240, intron 2 of 7) intron (NM_014240, intron 2 of 7) 31900 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 1418.67 chr18 63578345 63578878 + 5 NA Intergenic Intergenic -8689 NM_001307923 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 1169.67 chr4 115234341 115234770 + 5 NA Intergenic Intergenic -120935 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 1563 chr8 131245570 131246820 + 5 NA Intergenic Intergenic -205286 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 671.666 chr11 85595113 85595781 + 5 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 31823 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 1374 chr16 35391096 35391992 + 5 NA TTS (NR_027079) TTS (NR_027079) 28013 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 1754.33-2 chr5 5141311 5142247 + 5 NA intron (NM_139056, intron 2 of 22) intron (NM_139056, intron 2 of 22) 1449 NR_136935 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 630.833-4 chr3 125150496 125150737 + 5 NA TTS (NR_049815) TTS (NR_049815) 936 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 1331.5 chrX 100768676 100769538 + 5 NA Intergenic L1M4c|LINE|L1 -36986 NM_001370162 94121 Hs.592224 NM_080737 ENSG00000102362 SYTL4 SLP4 synaptotagmin like 4 protein-coding 1062.5-2 chr7 143240350 143241061 + 4.83333 NA intron (NM_001130026, intron 8 of 10) intron (NM_001130026, intron 8 of 10) 18668 NM_176882 259286 Hs.352241 NM_176882 ENSG00000221937 TAS2R40 GPR60|T2R40|T2R58 taste 2 receptor member 40 protein-coding 1383.5-2 chr7 33757409 33758151 + 4.83333 NA Intergenic Intergenic -147135 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 1286.17 chr20 45319298 45320109 + 4.83333 NA Intergenic Intergenic -11174 NM_003833 8785 Hs.278489 NM_003833 ENSG00000124159 MATN4 - matrilin 4 protein-coding 1728.33 chr4 75724071 75724712 + 4.83333 NA promoter-TSS (NM_001290049) promoter-TSS (NM_001290049) -131 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 1199.83-3 chr2 212686140 212686513 + 4.83333 NA Intergenic Intergenic -109005 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 1108.17 chr1 207884702 207885268 + 4.83333 NA 3' UTR (NM_001025109, exon 8 of 8) 3' UTR (NM_001025109, exon 8 of 8) 26140 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 882-2 chr9 89310746 89311182 + 4.83333 NA promoter-TSS (NM_001827) promoter-TSS (NM_001827) -231 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 669.166 chr12 6924168 6924646 + 4.83333 NA promoter-TSS (NM_001007026) promoter-TSS (NM_001007026) -52 NM_001007026 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 1043.5 chr20 41095232 41095833 + 4.83333 NA intron (NM_003286, intron 9 of 20) intron (NM_003286, intron 9 of 20) -42011 NM_182811 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 1821 chr2 44044099 44044687 + 4.83333 NA Intergenic Intergenic -48404 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 934.833 chr13 38530628 38530940 + 4.83333 NA Intergenic Intergenic -36940 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 1048.83 chr11 46314825 46315722 + 4.83333 NA intron (NM_052854, intron 8 of 11) intron (NM_052854, intron 8 of 11) -17653 NM_201532 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding 1337.33 chr18 7177063 7177757 + 4.83333 NA Intergenic Intergenic -53694 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 1578 chr9 6054495 6055593 + 4.83333 NA Intergenic Intergenic -39420 NM_012416 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 2029.67 chr8 107779486 107780560 + 4.83333 NA Intergenic Intergenic -282105 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 1414.83 chr3 87167777 87168374 + 4.83333 NA Intergenic Intergenic 58202 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 1764.67 chr8 109561230 109562162 + 4.83333 NA intron (NM_198120, intron 6 of 6) intron (NM_198120, intron 6 of 6) 21070 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 2792.5 chr4 41692811 41694264 + 4.83333 NA intron (NM_001330786, intron 22 of 22) intron (NM_001330786, intron 22 of 22) 55433 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 2179.33 chr8 100540795 100541978 + 4.83333 NA intron (NM_001270377, intron 1 of 4) intron (NM_001270377, intron 1 of 4) 18373 NM_001270377 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 1219.33 chr5 32589957 32590628 + 4.83333 NA intron (NM_006713, intron 2 of 4) intron (NM_006713, intron 2 of 4) 4735 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 1442.67-3 chrX 52995203 52995987 + 4.83333 NA promoter-TSS (NM_001242489) promoter-TSS (NM_001242489) -123 NM_001242492 29057 Hs.6451 NM_014138 ENSG00000268350 FAM156A PRO0659|TMEM29 family with sequence similarity 156 member A protein-coding 1286.33-2 chr9 35954698 35955537 + 4.83333 NA Intergenic Intergenic 3037 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 1012.83 chr4 35934477 35935001 + 4.83333 NA Intergenic Intergenic 309200 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 1360.67 chr7 12389028 12389514 + 4.83333 NA exon (NM_001346972, exon 3 of 27) exon (NM_001346972, exon 3 of 27) 14594 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 819-2 chr3 28317360 28317601 + 4.83333 NA intron (NR_138585, intron 3 of 3) intron (NR_138585, intron 3 of 3) -31241 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 1478.83-2 chr1 156385234 156385839 + 4.83333 NA TTS (NM_001256395) TTS (NM_001256395) 16325 NM_001256396 57127 Hs.131835 NM_020407 ENSG00000132677 RHBG SLC42A2 Rh family B glycoprotein (gene/pseudogene) protein-coding 1629.83 chr14 49879446 49880487 + 4.83333 NA Intergenic L1MDa|LINE|L1 -13116 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 1788.17 chr6 122491672 122492743 + 4.83333 NA intron (NM_001270393, intron 3 of 7) intron (NM_001270393, intron 3 of 7) 20290 NM_001270393 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 1068 chr2 135797500 135797906 + 4.83333 NA intron (NM_002299, intron 13 of 16) intron (NM_002299, intron 13 of 16) -22488 NR_045486 100507600 Hs.662020 NR_045486 ENSG00000226806 LOC100507600 - uncharacterized LOC100507600 ncRNA 719.5 chr14 68788956 68789542 + 4.83333 NA 3' UTR (NM_004926, exon 2 of 2) 3' UTR (NM_004926, exon 2 of 2) 4665 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 1634-2 chr3 185943260 185944232 + 4.83333 NA Intergenic LTR41|LTR|ERVL -5732 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 1160.5-2 chr5 40736424 40736967 + 4.83333 NA intron (NM_012382, intron 2 of 4) MIR|SINE|MIR 19266 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 1471.5 chr14 87616281 87617057 + 4.83333 NA Intergenic Intergenic 38625 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 962.833-2 chr4 72702135 72702465 + 4.83333 NA Intergenic Intergenic -133079 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 1450.17-2 chr2 123993591 123994330 + 4.83333 NA Intergenic Intergenic 31214 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1226 chr5 50325079 50326199 + 4.83333 NA Intergenic Intergenic 115649 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1211.67 chr1 233304285 233304740 + 4.83333 NA Intergenic Intergenic -8787 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 721.667 chr8 56248075 56248566 + 4.83333 NA Intergenic Intergenic 36531 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 680.667 chr4 98027962 98028326 + 4.83333 NA intron (NM_174952, intron 5 of 10) MLT1D-int|LTR|ERVL-MaLR 115332 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 882.333 chr6 105087180 105087830 + 4.83333 NA Intergenic Intergenic 48841 NM_147147 11149 Hs.221660 NM_007073 ENSG00000112276 BVES CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1 blood vessel epicardial substance protein-coding 1472.5 chr11 75248393 75249105 + 4.83333 NA Intergenic Intergenic 7975 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 1696.83 chr14 52473561 52474164 + 4.83333 NA intron (NM_001160047, intron 14 of 20) intron (NM_001160047, intron 14 of 20) 78643 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 1122.67-3 chr9 129642140 129642863 + 4.83333 NA promoter-TSS (NM_017873) promoter-TSS (NM_017873) -332 NM_001202403 140459 Hs.125037 NM_017873 ENSG00000148331 ASB6 - ankyrin repeat and SOCS box containing 6 protein-coding 738.334-2 chr5 66306291 66306804 + 4.83333 NA Intergenic Intergenic -97101 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 1671.5 chr19 42450211 42450889 + 4.83333 NA intron (NR_073179, intron 1 of 1) intron (NR_073179, intron 1 of 1) -7604 NM_198477 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 787.5 chr1 201119401 201119652 + 4.83333 NA Intergenic MamGypLTR3|LTR|Gypsy -4154 NM_001270601 647219 Hs.143949 NM_001270601 ENSG00000232237 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 687.5-2 chr5 39599815 39599992 + 4.83333 NA Intergenic Intergenic 79472 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 1472.33 chr14 64510976 64511710 + 4.83333 NA intron (NM_001123329, intron 1 of 1) intron (NM_001123329, intron 1 of 1) -6130 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 1291.17 chr4 44927017 44927796 + 4.83333 NA Intergenic Intergenic -200772 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 1754 chr8 131036309 131037359 + 4.83333 NA intron (NM_001115, intron 1 of 17) L2a|LINE|L2 4075 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 856.333-2 chr6 168370156 168370468 + 4.83333 NA Intergenic Intergenic -50535 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 1156-2 chr2 178109627 178110303 + 4.83333 NA Intergenic Intergenic -1626 NM_001077197 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 1761.5 chr6 49622900 49623490 + 4.83333 NA intron (NM_000324, intron 1 of 9) intron (NM_000324, intron 1 of 9) 13679 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 909.666 chr19 48266716 48267254 + 4.83333 NA Intergenic AluSg|SINE|Alu -3096 NM_153608 163071 Hs.511883 NM_153608 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 713.666 chr10 95842060 95842498 + 4.83333 NA intron (NM_001164182, intron 3 of 8) intron (NM_001164182, intron 3 of 8) -65686 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 1787 chr2 40554255 40555515 + 4.83333 NA Intergenic Intergenic -42450 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 1261.5 chr11 87722347 87723312 + 4.83333 NA Intergenic Intergenic -3418 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 735.501 chr5 103139187 103139717 + 4.83333 NA intron (NM_001345878, intron 5 of 28) L1MA3|LINE|L1 19151 NM_001345873 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 1326.17 chr15 59532551 59533269 + 4.83333 NA Intergenic Intergenic -78873 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 648.166-2 chr3 37996805 37997287 + 4.83333 NA intron (NM_015873, intron 4 of 18) intron (NM_015873, intron 4 of 18) 2908 NR_163266 50853 Hs.103665 NM_015873 ENSG00000136059 VILL - villin like protein-coding 3264.33 chr2 219159535 219161320 + 4.83333 NA intron (NM_024782, intron 1 of 7) CpG 438 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 733.833 chr17 19992881 19993234 + 4.83333 NA Intergenic FRAM|SINE|Alu -15201 NM_001330152 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 1811.66 chr14 50320803 50321496 + 4.83333 NA intron (NM_001370605, intron 2 of 5) intron (NM_001370605, intron 2 of 5) 8825 NM_001003803 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 1036.67 chr1 159798969 159799360 + 4.83333 NA Intergenic Intergenic -1348 NM_001284217 343413 Hs.196955 NM_001004310 ENSG00000181036 FCRL6 FcRH6 Fc receptor like 6 protein-coding 781.5-2 chr6 37325615 37326215 + 4.83333 NA intron (NR_130108, intron 12 of 12) intron (NR_130108, intron 12 of 12) -28068 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 1627.83-2 chr20 49534014 49534965 + 4.83333 NA intron (NM_000961, intron 5 of 9) intron (NM_000961, intron 5 of 9) 33648 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 1519.17 chr16 30021305 30021939 + 4.83333 NA Intergenic CpG -1712 NM_001109660 146378 Hs.651588 NM_001109659 ENSG00000167194 C16orf92 - chromosome 16 open reading frame 92 protein-coding 1970.67 chr5 43105248 43106134 + 4.83333 NA Intergenic Intergenic -15223 NM_001330704 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 840.167 chr11 7694832 7695107 + 4.83333 NA intron (NM_198185, intron 12 of 14) L2a|LINE|L2 11508 NM_198185 341277 Hs.532475 NM_198185 ENSG00000183378 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 1192.33 chr1 177181603 177182164 + 4.83333 NA intron (NM_021165, intron 1 of 7) CpG 10925 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 841-2 chr3 104563984 104564586 + 4.83333 NA Intergenic Intergenic -802428 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 1239.17 chr15 85858554 85859147 + 4.83333 NA Intergenic Intergenic 33215 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 1546.17-3 chr2 228681222 228682052 + 4.83333 NA Intergenic Intergenic -70242 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 1978 chr6 133916508 133917404 + 4.83333 NA Intergenic MLT2F|LTR|ERVL 27834 NM_003206 6943 Hs.78061 NM_003206 ENSG00000118526 TCF21 POD1|bHLHa23 transcription factor 21 protein-coding 688.833-2 chr3 42191281 42191588 + 4.83333 NA intron (NM_001349247, intron 6 of 16) intron (NM_001349247, intron 6 of 16) 31241 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 1496.5 chr10 94629817 94630721 + 4.83333 NA Intergenic Intergenic -53460 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 1616.83 chr5 96336302 96337176 + 4.83333 NA intron (NR_130776, intron 3 of 4) intron (NR_130776, intron 3 of 4) 95420 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 2083.5 chr2 62456527 62457588 + 4.83333 NA Intergenic CpG 49138 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 1250.33-3 chr3 63349510 63350124 + 4.83333 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 71509 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 1340.67 chr1 175151975 175152443 + 4.83333 NA Intergenic Intergenic 40567 NM_014656 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 836.834 chr4 64713048 64713841 + 4.83333 NA Intergenic Intergenic 291056 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 807.166 chr3 113913057 113913544 + 4.83333 NA intron (NM_001172105, intron 4 of 12) AluSx|SINE|Alu 15800 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 1287-3 chr2 48106559 48107237 + 4.83333 NA Intergenic Intergenic -201105 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 1492.33 chr10 28179474 28180281 + 4.83333 NA intron (NR_134518, intron 2 of 16) intron (NR_134518, intron 2 of 16) 102246 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 1848.5-2 chr16 11407248 11407958 + 4.83333 NA intron (NM_001370704, intron 46 of 66) intron (NM_001370704, intron 46 of 66) -57657 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 1020.83-2 chr14 74905644 74906218 + 4.83333 NA non-coding (NR_163406, exon 12 of 12) non-coding (NR_163406, exon 12 of 12) 16511 NR_163406 83694 Hs.414481 NM_031464 ENSG00000198208 RPS6KL1 RSKL2 ribosomal protein S6 kinase like 1 protein-coding 1557.33 chr7 50632746 50633551 + 4.83333 NA intron (NM_001350816, intron 6 of 17) L1PB4|LINE|L1 -67743 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 1015.83 chr11 55715154 55715435 + 4.83333 NA Intergenic Intergenic 50127 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 1337.5-2 chr22 37643194 37643686 + 4.83333 NA intron (NM_018957, intron 6 of 17) intron (NM_018957, intron 6 of 17) 3771 NM_018957 23616 Hs.601143 NM_018957 ENSG00000100092 SH3BP1 ARHGAP43 SH3 domain binding protein 1 protein-coding 2020 chr5 69007333 69008814 + 4.83333 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 21854 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 2133.33 chr17 74960402 74962017 + 4.83333 NA intron (NM_030630, intron 6 of 18) MER33|DNA|hAT-Charlie -9480 NR_110878 102723641 NR_110878 ENSG00000263586 HID1-AS1 - HID1 antisense RNA 1 ncRNA 996.833-2 chr7 11211941 11212827 + 4.83333 NA Intergenic Intergenic 238512 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 1604.67-2 chr9 18254734 18255503 + 4.83333 NA Intergenic Intergenic -219035 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 1235.67 chr20 37534104 37534963 + 4.83333 NA Intergenic Intergenic -6602 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 1000.33-2 chr11 72471224 72471546 + 4.83333 NA Intergenic LTR16C|LTR|ERVL -36701 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 1249.5 chr1 182143051 182143657 + 4.83333 NA Intergenic Intergenic -81642 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 1624.83 chr1 113835263 113836106 + 4.83333 NA intron (NM_012411, intron 11 of 18) intron (NM_012411, intron 11 of 18) -20951 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 774 chr13 95478338 95478940 + 4.83333 NA TTS (NR_046533) TTS (NR_046533) 45040 NM_182848 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|HELIX|OSP-L|OSPL claudin 10 protein-coding 1558.83 chr2 32772160 32773000 + 4.83333 NA intron (NM_017735, intron 13 of 19) MER47A|DNA|TcMar-Tigger -52853 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 865.333 chr1 62175258 62175744 + 4.83333 NA Intergenic Intergenic -19348 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 1044.67 chr1 202343366 202344250 + 4.83333 NA Intergenic Intergenic -1842 NM_001310326 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 740.834-2 chr20 44747402 44747910 + 4.83333 NA intron (NM_022358, intron 1 of 1) intron (NM_022358, intron 1 of 1) -1429 NR_132377 106144538 Hs.255479 NR_132377 KCNK15-AS1 - KCNK15 and WISP2 antisense RNA 1 ncRNA 1012.5-2 chr8 130764296 130764910 + 4.83333 NA Intergenic Intergenic 276306 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 1296.33 chr17 55513910 55514635 + 4.83333 NA Intergenic Intergenic -92437 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 1267.5 chr11 133078316 133079178 + 4.83333 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -134979 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 1399.83-2 chr22 35583025 35583672 + 4.83333 NA Intergenic Intergenic 33981 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 1374-2 chr5 116137540 116138545 + 4.83333 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 52580 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 1731.83 chr4 87150619 87151237 + 4.83333 NA Intergenic Intergenic 69340 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 880-2 chr1 239986958 239987579 + 4.83333 NA Intergenic Intergenic -20256 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 1577.5 chr2 183038412 183039058 + 4.83333 NA promoter-TSS (NM_205842) promoter-TSS (NM_205842) -278 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 1565.5 chr7 13279646 13280444 + 4.83333 NA Intergenic Intergenic 592412 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 807.833 chr6 70369568 70369922 + 4.83333 NA Intergenic Intergenic -24457 NR_125857 101928353 NR_125857 EVADR - uncharacterized LOC101928353 ncRNA 1264.67 chr8 30227553 30228287 + 4.83333 NA Intergenic Intergenic 71551 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 1277.67-2 chr7 94087693 94088215 + 4.83333 NA Intergenic Intergenic -83599 NM_001317739 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 731.333-2 chr5 38265498 38266023 + 4.83333 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) 7201 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 2137.33 chr9 74773479 74774507 + 4.83333 NA intron (NM_017662, intron 24 of 38) intron (NM_017662, intron 24 of 38) 113354 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 853.667 chr11 59208106 59208593 + 4.83333 NA TTS (NM_001039396) TTS (NM_001039396) 4578 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 1656.83-2 chr16 58814013 58814883 + 4.83333 NA Intergenic Intergenic -80132 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 956.667 chr5 112174929 112175456 + 4.83333 NA intron (NM_001347887, intron 18 of 23) intron (NM_001347887, intron 18 of 23) 13707 NR_002922 654322 Hs.689709 NR_002922 ENSG00000238363 SNORA13 ACA13 small nucleolar RNA, H/ACA box 13 snoRNA 2157.67-2 chr2 110755309 110756123 + 4.83333 NA intron (NM_001371254, intron 1 of 18) intron (NM_001371254, intron 1 of 18) 23143 NM_001371254 1373.5-2 chr22 37606739 37607483 + 4.83333 NA Intergenic MIR3|SINE|MIR -1363 NM_001363771 26088 Hs.499158 NM_013365 ENSG00000100083 GGA1 - golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 716.834 chr10 78029536 78029917 + 4.83333 NA promoter-TSS (NM_007055) promoter-TSS (NM_007055) -211 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 1415.67-2 chr5 38192921 38193893 + 4.83333 NA Intergenic Intergenic 44927 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 1016.17 chr8 57343282 57343990 + 4.83333 NA promoter-TSS (NR_125818) promoter-TSS (NR_125818) -151 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 560.166 chr12 3770822 3771204 + 4.83333 NA Intergenic L1ME1|LINE|L1 -17904 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 1243 chr22 19910097 19910523 + 4.83333 NA intron (NR_147957, intron 7 of 16) intron (NR_147957, intron 7 of 16) 22243 NM_001352301 10587 Hs.443430 NM_006440 ENSG00000184470 TXNRD2 GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2 thioredoxin reductase 2 protein-coding 3676.67 chr10 89216787 89218292 + 4.83333 NA intron (NM_001127605, intron 8 of 9) intron (NM_001127605, intron 8 of 9) -10222 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 1177.17 chr17 61635683 61636362 + 4.83333 NA Intergenic L1MA4|LINE|L1 -44803 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 1159-2 chr7 106009424 106009997 + 4.83333 NA intron (NM_152750, intron 8 of 18) CpG 46446 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 943.333-2 chr2 172710200 172711104 + 4.83333 NA Intergenic Intergenic -25193 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 1004.5-2 chr6 151765310 151765856 + 4.83333 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) -40090 NM_001291241 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 1499.5 chr1 152052462 152053732 + 4.83333 NA Intergenic AluJb|SINE|Alu -16093 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 1372.17-2 chr3 113626667 113627417 + 4.83333 NA intron (NR_136285, intron 20 of 20) intron (NR_136285, intron 20 of 20) 32166 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 907.166 chr5 160345468 160346013 + 4.83333 NA Intergenic MER96B|DNA|hAT-Tip100 -6148 NR_131769 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 2077 chr1 182445853 182446791 + 4.83333 NA Intergenic Intergenic -3824 NM_001366934 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 1727.67 chr10 76086571 76087408 + 4.83333 NA intron (NM_001305581, intron 5 of 6) UCON89|DNA|hAT? 304228 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 992.833 chr2 149313381 149314014 + 4.83333 NA Intergenic L1MEi|LINE|L1 -16288 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 1294.17 chr2 237572151 237572788 + 4.83333 NA Intergenic Intergenic 5895 NM_015893 51052 Hs.247710 NM_015893 ENSG00000071677 PRLH PRH|PRRP prolactin releasing hormone protein-coding 1625.33-2 chr5 28344417 28345387 + 4.83333 NA Intergenic MLT2B4|LTR|ERVL -57237 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 1546.17-4 chr5 93801002 93801877 + 4.83333 NA intron (NM_032042, intron 8 of 10) intron (NM_032042, intron 8 of 10) -59839 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 862 chr1 198088246 198088527 + 4.83333 NA Intergenic Intergenic -68612 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 991.5 chr15 41904644 41904962 + 4.83333 NA intron (NM_139265, intron 5 of 5) intron (NM_139265, intron 5 of 5) -10750 NM_016642 51332 Hs.709819 NM_016642 ENSG00000137877 SPTBN5 BSPECV|HUBSPECV|HUSPECV spectrin beta, non-erythrocytic 5 protein-coding 2153.17 chr1 78676164 78677174 + 4.83333 NA Intergenic Intergenic 26838 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 1043 chr18 64037585 64038402 + 4.83333 NA Intergenic Intergenic -66098 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 3495 chr7 23712130 23714217 + 4.83333 NA intron (NM_031414, intron 3 of 23) Tigger3b|DNA|TcMar-Tigger 2954 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 1650.67 chr11 115504469 115505068 + 4.83333 NA promoter-TSS (NM_001301043) promoter-TSS (NM_001301043) -353 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 1266.33 chr17 75113980 75114673 + 4.83333 NA 3' UTR (NM_001304273, exon 3 of 3) 3' UTR (NM_001304273, exon 3 of 3) 4357 NM_001304272 79637 Hs.413047 NM_024585 ENSG00000125449 ARMC7 - armadillo repeat containing 7 protein-coding 2032.67 chr18 63518096 63519269 + 4.83333 NA Intergenic Intergenic -37478 NM_080474 89777 Hs.348541 NM_080474 ENSG00000166634 SERPINB12 YUKOPIN serpin family B member 12 protein-coding 632.5 chr20 49541592 49542202 + 4.83333 NA intron (NM_000961, intron 4 of 9) L2a|LINE|L2 26240 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 1993.84 chr2 227237832 227238747 + 4.83333 NA intron (NR_102371, intron 9 of 13) A-rich|Low_complexity|Low_complexity 73724 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 668.167-2 chr2 178280276 178280954 + 4.83333 NA intron (NM_001201480, intron 1 of 25) intron (NM_001201480, intron 1 of 25) -39627 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 1736.17 chr11 111230160 111231058 + 4.83333 NA Intergenic Intergenic -15116 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 1718.16 chr13 106917804 106918883 + 4.83333 NA Intergenic Intergenic 264463 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 1471 chr14 47916902 47917758 + 4.83333 NA Intergenic Intergenic -122316 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 1227.33 chr9 129726387 129726973 + 4.83333 NA Intergenic Intergenic -7974 NR_132102 101929437 Hs.112596 NR_132102 ENSG00000236024 PRRX2-AS1 - PRRX2 antisense RNA 1 ncRNA 459.667 chr10 116386174 116386463 + 4.83333 NA Intergenic Intergenic -41529 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 919.333 chr12 62123839 62124116 + 4.83333 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 68862 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 971.166 chr17 70144392 70144690 + 4.83333 NA Intergenic Intergenic 24861 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 1416.83-2 chr16 83825802 83826534 + 4.83333 NA Intergenic Intergenic 18190 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 1411.83 chr20 46747837 46748553 + 4.83333 NA Intergenic Intergenic 38546 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 1663.5-2 chr6 159252771 159253471 + 4.83333 NA intron (NM_032532, intron 17 of 22) MamRTE1|LINE|RTE-BovB -83114 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 940.167 chr17 34170876 34171451 + 4.83333 NA intron (NR_110748, intron 5 of 5) MER30|DNA|hAT-Charlie 12469 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 864.666 chr16 4956135 4956776 + 4.83333 NA Intergenic L2c|LINE|L2 -1875 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 1574.67-2 chr11 124644134 124645231 + 4.83333 NA intron (NM_001199922, intron 9 of 11) intron (NM_001199922, intron 9 of 11) 21818 NR_016021 84897 Hs.436410 NM_032811 ENSG00000154144 TBRG1 NIAM|TB-5 transforming growth factor beta regulator 1 protein-coding 918.333 chr12 2291147 2291650 + 4.83333 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 21622 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 1353.83-2 chr20 8043299 8044143 + 4.83333 NA Intergenic Intergenic -23960 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 1478.67 chr1 152185517 152186285 + 4.83333 NA Intergenic Intergenic -26673 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 1085.33 chr20 3710835 3711336 + 4.83333 NA intron (NM_023068, intron 1 of 21) intron (NM_023068, intron 1 of 21) 1515 NM_023068 6614 Hs.31869 NM_023068 ENSG00000088827 SIGLEC1 CD169|SIGLEC-1|SN sialic acid binding Ig like lectin 1 protein-coding 1546.83-2 chr5 58462103 58463139 + 4.83333 NA Intergenic Intergenic -2482 NM_001252226 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 1898.17-2 chr14 24241911 24243377 + 4.83333 NA promoter-TSS (NM_001363668) promoter-TSS (NM_001363668) -21 NM_001099274 26277 Hs.496191 NM_012461 ENSG00000092330 TINF2 DKCA3|TIN2 TERF1 interacting nuclear factor 2 protein-coding 1520.67 chr7 47819257 47819939 + 4.83333 NA non-coding (NR_161268, exon 3 of 3) non-coding (NR_161268, exon 3 of 3) 24307 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 2094 chr1 42173279 42174144 + 4.83333 NA Intergenic MIR|SINE|MIR -8966 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 1298.5-2 chr14 79010602 79011344 + 4.83333 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -189009 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 991.166 chr6 18595996 18596623 + 4.83333 NA intron (NR_149116, intron 4 of 7) intron (NR_149116, intron 4 of 7) 24525 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 1731.33 chr6 137571584 137572646 + 4.83333 NA Intergenic Intergenic -77721 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 1858.5 chr7 43838601 43839703 + 4.83333 NA Intergenic Intergenic 30365 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 961.501 chr8 63222184 63222751 + 4.83333 NA Intergenic Intergenic 53464 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 1008.33-2 chr5 151742590 151743510 + 4.83333 NA intron (NM_004045, intron 3 of 3) intron (NM_004045, intron 3 of 3) 15581 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 1201.67 chr15 59501111 59502128 + 4.83333 NA intron (NM_152450, intron 4 of 8) intron (NM_152450, intron 4 of 8) 63433 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 1477.83-3 chr8 104417904 104418638 + 4.83333 NA intron (NM_001385, intron 7 of 9) intron (NM_001385, intron 7 of 9) 48784 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 2010.5 chr2 71298919 71300020 + 4.83333 NA Intergenic Plat_L3|LINE|CR1 -32286 NM_001252612 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 890.333-2 chr9 82961493 82961987 + 4.83333 NA Intergenic Intergenic 101402 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 1460.17 chr2 72887435 72888425 + 4.83333 NA intron (NM_003124, intron 1 of 2) intron (NM_003124, intron 1 of 2) 522 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 1082.5-2 chr3 64530355 64530950 + 4.83333 NA intron (NM_001318781, intron 37 of 38) intron (NM_001318781, intron 37 of 38) -30694 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 505.5-9 chrX 132740465 132740738 + 4.83333 NA intron (NM_001077188, intron 3 of 5) intron (NM_001077188, intron 3 of 5) 72959 NR_046691 100874102 Hs.619341 NR_046691 ENSG00000235849 HS6ST2-AS1 - HS6ST2 antisense RNA 1 ncRNA 1270.5-2 chr3 182683104 182684029 + 4.83333 NA Intergenic Intergenic -109938 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 1260.33 chr1 21963735 21964546 + 4.83333 NA Intergenic Intergenic -12882 NM_007352 23436 Hs.728752 NM_007352 ENSG00000219073 CELA3B CBPP|ELA3B chymotrypsin like elastase 3B protein-coding 1006.67-2 chr5 151446855 151447823 + 4.83333 NA promoter-TSS (NM_001308150) promoter-TSS (NM_001308150) -264 NM_078483 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 1018.5-3 chr3 42443884 42444448 + 4.83333 NA Intergenic Intergenic -33556 NM_144634 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 1359.83 chr2 102753243 102753957 + 4.83333 NA intron (NM_001321346, intron 1 of 3) AluJo|SINE|Alu -8431 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 1478 chr7 21256116 21256918 + 4.83333 NA Intergenic Intergenic -171566 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 1750 chr18 9073363 9074130 + 4.83333 NA Intergenic Intergenic -28953 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 1672.67-2 chr6 131116566 131117401 + 4.83333 NA Intergenic L1MEd|LINE|L1 -18484 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 2003.67 chr14 60349723 60350519 + 4.83333 NA Intergenic Intergenic 26925 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 738-2 chr4 121307536 121308213 + 4.83333 NA Intergenic Intergenic 73144 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 1171-2 chr6 62149611 62150721 + 4.83333 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 136059 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 1117.5-2 chr4 105520775 105521241 + 4.83333 NA Intergenic Intergenic -31612 NM_001242729 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 1211.5 chr18 66495876 66496539 + 4.83333 NA Intergenic Intergenic 107883 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 2779.16 chr1 180481790 180483505 + 4.83333 NA intron (NM_032360, intron 3 of 7) intron (NM_032360, intron 3 of 7) 19930 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 1333.17 chr12 15590240 15590975 + 4.83333 NA intron (NM_030671, intron 13 of 13) intron (NM_030671, intron 13 of 13) 43996 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 872 chr5 66757198 66757940 + 4.83333 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) -71204 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 2414.5 chr1 111031938 111032877 + 4.83333 NA Intergenic Intergenic -68463 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 1878.33 chr16 79602060 79603229 + 4.83333 NA Intergenic Intergenic -1907 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 1116.67 chr8 28621927 28622414 + 4.83333 NA Intergenic CpG 79294 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 1085.17-4 chr8 132145068 132145503 + 4.83333 NA intron (NM_001204824, intron 9 of 14) intron (NM_001204824, intron 9 of 14) -40020 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 1085.5-2 chr5 59174347 59174829 + 4.83333 NA intron (NM_001364602, intron 5 of 5) intron (NM_001364602, intron 5 of 5) 101527 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1087.17 chr2 113390460 113390946 + 4.83333 NA Intergenic MIR3|SINE|MIR -46988 NM_001330339 150472 Hs.531330 NM_172003 ENSG00000136682 CBWD2 - COBW domain containing 2 protein-coding 2161.67 chr2 24083783 24084975 + 4.83333 NA promoter-TSS (NM_001206802) promoter-TSS (NM_001206802) -48 NM_001206802 9540 Hs.50649 NM_004881 ENSG00000115129 TP53I3 PIG3 tumor protein p53 inducible protein 3 protein-coding 1584.33 chr9 72271964 72272641 + 4.83333 NA Intergenic Intergenic -33134 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 950.5 chr12 54439757 54440092 + 4.83333 NA intron (NR_120487, intron 3 of 3) intron (NR_120487, intron 3 of 3) 20139 NR_120488 102724050 Hs.670941 NR_120486 ENSG00000258137 LOC102724050 - uncharacterized LOC102724050 ncRNA 1199.83 chr10 25080658 25081425 + 4.83333 NA Intergenic Intergenic -18762 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 1408.67 chr3 33131396 33132167 + 4.83333 NA intron (NM_006371, intron 4 of 6) intron (NM_006371, intron 4 of 6) 17823 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 860.166-2 chr6 95431395 95431762 + 4.83333 NA Intergenic Intergenic 145873 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 1601.83-2 chr7 25892579 25893287 + 4.83333 NA Intergenic Intergenic 57053 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 1056.17 chr16 74862669 74863117 + 4.83333 NA Intergenic Intergenic -88073 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 1558.67 chr2 124803812 124804770 + 4.83333 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 779004 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 1415.67 chr14 75295031 75296544 + 4.83333 NA intron (NR_038421, intron 2 of 2) intron (NR_038421, intron 2 of 2) 1383 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 1452.33 chr3 86563152 86564224 + 4.83333 NA Intergenic Intergenic 81745 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 1324.83 chr15 32994826 32995424 + 4.83333 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 73049 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 1874.5 chr20 35092373 35094062 + 4.83333 NA promoter-TSS (NM_015638) promoter-TSS (NM_015638) -402 NM_199368 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 1684.83 chr3 194682430 194683328 + 4.83333 NA Intergenic Intergenic -3004 NM_153690 131583 Hs.435080 NM_153690 ENSG00000185112 FAM43A - family with sequence similarity 43 member A protein-coding 955.5-3 chr4 153128074 153128377 + 4.83333 NA Intergenic Intergenic -24109 NM_001351056 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 1030.33 chr1 112337161 112337435 + 4.83333 NA Intergenic Intergenic -58916 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 1598.33 chr14 102523931 102525141 + 4.83333 NA Intergenic AluJr|SINE|Alu -14760 NM_001348651 122416 Hs.432945 NM_152326 ENSG00000156381 ANKRD9 - ankyrin repeat domain 9 protein-coding 1343.67-2 chr8 33681072 33681977 + 4.83333 NA Intergenic Intergenic -81418 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 945.834 chr12 62006301 62006877 + 4.83333 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 186250 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 1096.5 chr11 45104945 45105956 + 4.83333 NA intron (NM_001359633, intron 2 of 7) MIR3|SINE|MIR 11437 NM_001359633 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 878.834-2 chr15 68383411 68384111 + 4.83333 NA intron (NM_001004439, intron 2 of 29) intron (NM_001004439, intron 2 of 29) 48402 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 930.333 chr10 87656262 87657049 + 4.83333 NA Intergenic Intergenic -3223 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 1230.83-2 chr11 87420815 87421818 + 4.83333 NA Intergenic Intergenic 298095 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 1573.33 chr3 128617486 128618270 + 4.83333 NA Intergenic CpG 32940 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 1536.33 chr15 59492822 59493522 + 4.83333 NA intron (NM_152450, intron 4 of 8) intron (NM_152450, intron 4 of 8) 54986 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 536-5 chr8 9831105 9831478 + 4.83333 NA Intergenic Intergenic 72038 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 1696.5 chr10 52740684 52741535 + 4.83333 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 14295 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 714 chr15 34210017 34210661 + 4.83333 NA promoter-TSS (NM_024713) promoter-TSS (NM_024713) -243 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 1577.33 chr10 69515557 69516460 + 4.83333 NA Intergenic L2a|LINE|L2 57414 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 1798.5 chr16 23557090 23557743 + 4.83333 NA promoter-TSS (NR_003501) promoter-TSS (NR_003501) -41 NR_003501 124454 Hs.620541 NM_001083614 ENSG00000103356 EARS2 COXPD12|MSE1|gluRS|mtGlnRS glutamyl-tRNA synthetase 2, mitochondrial protein-coding 1084-2 chr20 13546498 13547035 + 4.83333 NA intron (NM_001323602, intron 4 of 9) intron (NM_001323602, intron 4 of 9) 92166 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 1758 chr1 25997818 25998659 + 4.83333 NA promoter-TSS (NM_000437) promoter-TSS (NM_000437) -175 NM_000437 5051 Hs.477083 NM_000437 ENSG00000158006 PAFAH2 HSD-PLA2 platelet activating factor acetylhydrolase 2 protein-coding 1825.67 chr2 71510124 71510856 + 4.83333 NA intron (NM_001130985, intron 4 of 54) intron (NM_001130985, intron 4 of 54) 43791 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 1095.83 chr15 100873040 100873639 + 4.83333 NA non-coding (NR_160707, exon 3 of 3) non-coding (NR_160707, exon 3 of 3) -6492 NM_000693 220 Hs.459538 NM_000693 ENSG00000184254 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family member A3 protein-coding 2103.83 chr1 111222133 111223410 + 4.83333 NA Intergenic Intergenic -4888 NM_001025197 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 1049.5-2 chr2 7202718 7203390 + 4.83333 NA Intergenic Intergenic -125174 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 1658.83 chr10 94320022 94320973 + 4.83333 NA intron (NM_001165979, intron 28 of 31) intron (NM_001165979, intron 28 of 31) -33427 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 1584 chr9 84315192 84316082 + 4.83333 NA intron (NM_022127, intron 2 of 18) intron (NM_022127, intron 2 of 18) 25121 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 1402 chr13 112606252 112607038 + 4.83333 NA Intergenic Intergenic -18460 NM_001286279 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 549.334 chr11 76734019 76734293 + 4.83333 NA Intergenic Intergenic -12367 NR_024042 390226 Hs.440026 NR_024042 GUCY2EP GC-E|GCD|GUCY2E guanylate cyclase 2E, pseudogene pseudo 1511 chr2 84302867 84303397 + 4.83333 NA Intergenic Intergenic 12450 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 1246.5 chr13 37074565 37075122 + 4.83333 NA Intergenic L1MC5a|LINE|L1 -15130 NM_017569 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 1215.17-2 chr2 176814620 176815196 + 4.83333 NA Intergenic Intergenic 177154 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 982.167 chr6 68638000 68638702 + 4.83333 NA intron (NM_001704, intron 2 of 31) intron (NM_001704, intron 2 of 31) 3069 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 2225.67 chr7 54773673 54774410 + 4.83333 NA intron (NR_110040, intron 1 of 2) intron (NR_110040, intron 1 of 2) 14728 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 1137.5-2 chr18 59459287 59459822 + 4.83333 NA intron (NM_133459, intron 5 of 10) intron (NM_133459, intron 5 of 10) -100289 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 1851.5 chr17 45060822 45061808 + 4.83333 NA promoter-TSS (NM_001321326) promoter-TSS (NM_001321326) -2 NM_021079 4836 Hs.532790 NM_021079 ENSG00000136448 NMT1 NMT N-myristoyltransferase 1 protein-coding 1882 chr1 156688942 156690207 + 4.83333 NA Intergenic Intergenic -12167 NM_006617 10763 Hs.527971 NM_006617 ENSG00000132688 NES Nbla00170 nestin protein-coding 577.5-4 chr17 65027337 65027790 + 4.83333 NA intron (NM_006572, intron 2 of 3) L2c|LINE|L2 28211 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 741.5 chr13 53250211 53250586 + 4.83333 NA Intergenic Intergenic -98498 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 1225.5 chr12 40010947 40011966 + 4.83333 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 94625 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 1120.17 chr14 70567866 70568515 + 4.83333 NA Intergenic L1PA17|LINE|L1 32500 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 1612.83 chr16 80824614 80825413 + 4.83333 NA Intergenic Intergenic -20415 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 1001-3 chr8 86044000 86044706 + 4.83333 NA Intergenic Intergenic 25315 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 1412.5-2 chr8 78232447 78233158 + 4.83333 NA Intergenic Eulor8|DNA|TcMar? -283538 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 1572.84 chr17 69245871 69247357 + 4.66667 NA 3' UTR (NM_172232, exon 39 of 39) 3' UTR (NM_172232, exon 39 of 39) -1799 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 1077.17 chr16 85821317 85821780 + 4.66667 NA Intergenic Intergenic 21853 NM_001318788 1327 Hs.433419 NM_001861 ENSG00000131143 COX4I1 COX IV-1|COX4|COX4-1|COXIV|COXIV-1 cytochrome c oxidase subunit 4I1 protein-coding 984 chr15 40274641 40275168 + 4.66667 NA intron (NM_001128629, intron 9 of 9) intron (NM_001128629, intron 9 of 9) 7682 NM_001190479 100131244 Hs.711376 NM_001190479 ENSG00000230778 ANKRD63 - ankyrin repeat domain 63 protein-coding 1291.5 chr11 79076483 79076980 + 4.66667 NA intron (NM_001098816, intron 4 of 33) intron (NM_001098816, intron 4 of 33) 325378 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 1733.17 chr14 32575725 32577343 + 4.66667 NA intron (NM_004274, intron 4 of 13) intron (NM_004274, intron 4 of 13) 247236 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 830.167 chr11 103325656 103326166 + 4.66667 NA intron (NM_001377, intron 82 of 88) L1P4a|LINE|L1 216485 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 1130.83 chr5 36944578 36945376 + 4.66667 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 68208 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 1863.83 chr2 234550377 234551411 + 4.66667 NA Intergenic Intergenic -53813 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 1269.67 chr9 113112271 113112997 + 4.66667 NA promoter-TSS (NR_024376) promoter-TSS (NR_024376) -262 NR_024366 286333 Hs.99052 NR_024366 ENSG00000231528 FAM225A C9orf109|LINC00256A|NCRNA00256A family with sequence similarity 225 member A ncRNA 1942.83-2 chr9 87336618 87337444 + 4.66667 NA Intergenic Intergenic -160197 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 724.333 chr15 101300070 101300822 + 4.66667 NA Intergenic Intergenic -5198 NR_135506 6627 Hs.528763 NM_003090 ENSG00000131876 SNRPA1 Lea1|U2A' small nuclear ribonucleoprotein polypeptide A' protein-coding 1670.5 chr8 10825449 10826349 + 4.66667 NA promoter-TSS (NR_031711) promoter-TSS (NR_031711) -456 NR_031711 100302166 NR_031711 ENSG00000283210 MIR1322 MIRN1322|hsa-mir-1322 microRNA 1322 ncRNA 1623.83 chr2 224283959 224284968 + 4.66667 NA Intergenic Intergenic 117531 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 992-2 chr8 27323558 27324109 + 4.66667 NA intron (NM_173174, intron 5 of 35) intron (NM_173174, intron 5 of 35) 1431 NM_004103 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 554.833-3 chr7 135512020 135512487 + 4.66667 NA Intergenic MER20B|DNA|hAT-Charlie -2126 NM_001190850 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 1026.5 chr1 109112401 109113224 + 4.66667 NA promoter-TSS (NM_001366201) promoter-TSS (NM_001366201) -65 NM_001245025 127003 Hs.446962 NM_001122961 ENSG00000179902 C1orf194 - chromosome 1 open reading frame 194 protein-coding 2114 chr5 97162832 97163827 + 4.66667 NA intron (NM_018343, intron 9 of 9) intron (NM_018343, intron 9 of 9) 19918 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 663.166 chr6 68967951 68968506 + 4.66667 NA intron (NM_001704, intron 8 of 31) intron (NM_001704, intron 8 of 31) 332946 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 989.167-2 chr8 75257107 75257926 + 4.66667 NA intron (NR_103849, intron 1 of 1) intron (NR_103849, intron 1 of 1) 20965 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 896.667 chr8 103764094 103764513 + 4.66667 NA intron (NM_001348496, intron 3 of 23) intron (NM_001348496, intron 3 of 23) -54917 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 1234.67-2 chr2 239991884 239992433 + 4.66667 NA intron (NR_136157, intron 6 of 7) intron (NR_136157, intron 6 of 7) 33184 NM_004544 4705 Hs.277677 NM_004544 ENSG00000130414 NDUFA10 CI-42KD|CI-42k|MC1DN22 NADH:ubiquinone oxidoreductase subunit A10 protein-coding 1194.67-2 chr8 4837542 4838374 + 4.66667 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 156956 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1254.5 chr10 46030162 46031143 + 4.66667 NA promoter-TSS (NM_001145263) promoter-TSS (NM_001145263) 62 NM_001145261 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 1576.83-2 chr16 75788925 75789771 + 4.66667 NA Intergenic Intergenic -62858 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 1046.5 chr15 92797281 92797699 + 4.66667 NA TTS (NR_033769) TTS (NR_033769) 2006 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 1502.67-2 chr7 45917489 45918410 + 4.66667 NA intron (NM_000598, intron 1 of 4) MER5A|DNA|hAT-Charlie 3323 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 1253.17 chr5 93915080 93915637 + 4.66667 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -173758 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 1629.5 chr6 27792009 27793054 + 4.66667 NA Intergenic Intergenic 15400 NM_003519 8340 Hs.137594 NM_003519 ENSG00000185130 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1 H2B family member l protein-coding 1278.17 chr14 78959445 78960109 + 4.66667 NA intron (NR_073547, intron 10 of 20) intron (NR_073547, intron 10 of 20) -240205 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 691.333-2 chr19 14574145 14574471 + 4.66667 NA Intergenic Intergenic -2242 NM_004146 4713 Hs.532853 NM_004146 ENSG00000099795 NDUFB7 B18|CI-B18 NADH:ubiquinone oxidoreductase subunit B7 protein-coding 1408.67-2 chr5 126339096 126339607 + 4.66667 NA Intergenic Intergenic -20769 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 1711.33 chr19 45691492 45692659 + 4.66667 NA promoter-TSS (NM_177542) promoter-TSS (NM_177542) -83 NM_177542 6633 Hs.515472 NM_004597 ENSG00000125743 SNRPD2 SMD2|SNRPD1|Sm-D2 small nuclear ribonucleoprotein D2 polypeptide protein-coding 1408.33 chr5 91641336 91642143 + 4.66667 NA Intergenic Intergenic -258422 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 682.667-3 chr7 90629388 90629944 + 4.66667 NA intron (NM_001287135, intron 2 of 14) MER20B|DNA|hAT-Charlie 33345 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 1759 chr9 32579266 32580335 + 4.66667 NA Intergenic L1MC5|LINE|L1 -6616 NM_001199987 4712 Hs.493668 NM_002493 ENSG00000165264 NDUFB6 B17|CI NADH:ubiquinone oxidoreductase subunit B6 protein-coding 2010.67 chr2 163191158 163192102 + 4.66667 NA Intergenic Intergenic -352863 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 431.167-2 chrX 45187024 45187553 + 4.66667 NA intron (NM_024689, intron 2 of 2) intron (NM_024689, intron 2 of 2) 13588 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 1297.17 chr1 155176518 155177206 + 4.66667 NA intron (NM_001256599, intron 3 of 9) intron (NM_001256599, intron 3 of 9) 2108 NR_046329 80128 Hs.287735 NM_025058 ENSG00000163462 TRIM46 GENEY|TRIFIC tripartite motif containing 46 protein-coding 739.833 chr1 202341615 202342218 + 4.66667 NA promoter-TSS (NM_014176) promoter-TSS (NM_014176) 20 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 895.333-2 chr1 157193399 157194094 + 4.66667 NA Intergenic Intergenic -55155 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 685.666 chr10 69716904 69717371 + 4.66667 NA Intergenic Intergenic -84769 NM_001368895 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 808.167 chr4 64617785 64617968 + 4.66667 NA Intergenic Intergenic -208416 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1315-2 chr8 97559764 97560419 + 4.66667 NA Intergenic Intergenic -84093 NM_001363137 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 975 chr2 47334858 47335310 + 4.66667 NA promoter-TSS (NR_001568) promoter-TSS (NR_001568) -231 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 634.833 chr1 33470613 33471033 + 4.66667 NA Intergenic Intergenic -1822 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 1385 chr5 81194964 81195697 + 4.66667 NA intron (NM_006909, intron 18 of 26) intron (NM_006909, intron 18 of 26) -37990 NM_001099736 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 916.833-2 chr7 116588798 116589546 + 4.66667 NA intron (NR_120506, intron 2 of 4) intron (NR_120506, intron 2 of 4) 25648 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 988.001 chr13 112874476 112875265 + 4.66667 NA intron (NM_032189, intron 27 of 28) intron (NM_032189, intron 27 of 28) 93768 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 1099.17-2 chr8 119509593 119510268 + 4.66667 NA Intergenic Intergenic 83078 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 1882.17 chr8 113437262 113438520 + 4.66667 NA promoter-TSS (NM_198123) promoter-TSS (NM_198123) -952 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 1553.17-2 chr3 197186659 197187860 + 4.66667 NA intron (NM_001290983, intron 5 of 25) intron (NM_001290983, intron 5 of 25) -3128 NM_001204387 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 1106.5 chr10 123132547 123133240 + 4.66667 NA Intergenic CpG -3077 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 1036-2 chr2 70871247 70872036 + 4.66667 NA Intergenic CpG -16230 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 2285.67 chr2 160251832 160252849 + 4.66667 NA Intergenic Intergenic 19555 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 1340.5-2 chr6 88780729 88781424 + 4.66667 NA intron (NM_001286428, intron 10 of 13) MER20|DNA|hAT-Charlie 182542 NM_001286428 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 572.667 chr5 66987906 66988201 + 4.66667 NA intron (NM_001290226, intron 1 of 26) intron (NM_001290226, intron 1 of 26) 16101 NR_111908 101928794 Hs.672435 NR_111908 MAST4-AS1 - MAST4 antisense RNA 1 ncRNA 550.667-2 chr4 24488535 24489046 + 4.66667 NA Intergenic Intergenic -15885 NM_001330751 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 2209.67 chr17 76181956 76182830 + 4.66667 NA intron (NM_052916, intron 2 of 18) intron (NM_052916, intron 2 of 18) -41148 NM_001454 2302 Hs.651204 NM_001454 ENSG00000129654 FOXJ1 FKHL13|HFH-4|HFH4 forkhead box J1 protein-coding 1400.83 chr4 43131623 43132419 + 4.66667 NA Intergenic Intergenic 238755 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 1007.17 chr10 73529280 73529750 + 4.66667 NA exon (NM_001320441, exon 15 of 15) exon (NM_001320441, exon 15 of 15) 23825 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 1176 chr5 88729261 88729895 + 4.66667 NA intron (NM_001131005, intron 8 of 10) intron (NM_001131005, intron 8 of 10) -38537 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 658.833 chr18 8478639 8479112 + 4.66667 NA Intergenic GA-rich|Low_complexity|Low_complexity -111841 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 371.667-10 chr8 75401912 75402336 + 4.66667 NA Intergenic Intergenic -5525 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 786 chr14 88013684 88014351 + 4.66667 NA 3' UTR (NM_003608, exon 2 of 2) 3' UTR (NM_003608, exon 2 of 2) 8882 NM_003608 8477 Hs.443243 NM_003608 ENSG00000140030 GPR65 TDAG8|hTDAG8 G protein-coupled receptor 65 protein-coding 1387.5 chr9 28073236 28073896 + 4.66667 NA intron (NM_152570, intron 5 of 6) Kanga1a|DNA|TcMar-Tc2 -499700 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 850.667-2 chr19 35510234 35510584 + 4.66667 NA promoter-TSS (NM_001352332) promoter-TSS (NM_001352332) 61 NM_001308380 93099 Hs.417795 NM_033317 ENSG00000161249 DMKN UNQ729|ZD52F10 dermokine protein-coding 1171 chr5 170632923 170633678 + 4.66667 NA intron (NM_001278339, intron 1 of 7) intron (NM_001278339, intron 1 of 7) 48170 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 1150.17-3 chr3 168211245 168211695 + 4.66667 NA Intergenic Intergenic -38052 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 1046.33 chr17 29370321 29370660 + 4.66667 NA Intergenic Intergenic -20172 NR_039749 100616122 NR_039749 ENSG00000284162 MIR4523 - microRNA 4523 ncRNA 1360.33 chr10 95246352 95247315 + 4.66667 NA intron (NM_020992, intron 5 of 6) intron (NM_020992, intron 5 of 6) 44170 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 918.501 chr20 21702897 21703582 + 4.66667 NA intron (NR_109878, intron 1 of 4) CpG 346 NR_109878 101929608 Hs.694665 NR_109878 ENSG00000280350 LINC01726 - long intergenic non-protein coding RNA 1726 ncRNA 1249.67 chr21 31580910 31581384 + 4.66667 NA Intergenic MER5A1|DNA|hAT-Charlie 21914 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 774-2 chr4 74228674 74229120 + 4.66667 NA intron (NM_001144978, intron 6 of 7) intron (NM_001144978, intron 6 of 7) 70779 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 1414-2 chr6 36340464 36341608 + 4.66667 NA Intergenic Intergenic -4148 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 1538.33 chr2 164716804 164717811 + 4.66667 NA intron (NM_001365670, intron 7 of 13) intron (NM_001365670, intron 7 of 13) -29530 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 1253.33-2 chr2 85728683 85729394 + 4.66667 NA Intergenic Intergenic -24953 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding 926.5 chr1 241627655 241628091 + 4.66667 NA TTS (NM_001821) TTS (NM_001821) 8057 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 1475.5-3 chr7 16564722 16565312 + 4.66667 NA intron (NM_001195280, intron 5 of 8) intron (NM_001195280, intron 5 of 8) 38192 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 1468.17 chr15 99076693 99077263 + 4.66667 NA Intergenic Intergenic -28102 NM_145728 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 794.333-2 chr22 33923527 33924288 + 4.66667 NA Intergenic Intergenic -1019 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 2258.83 chr6 44237593 44238531 + 4.66667 NA Intergenic Intergenic -8104 NM_001271970 3326 Hs.509736 NM_007355 ENSG00000096384 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90 alpha family class B member 1 protein-coding 1095.5-4 chr6 116287433 116288111 + 4.66667 NA intron (NR_136524, intron 1 of 4) MER20B|DNA|hAT-Charlie -7655 NM_003309 7259 Hs.458358 NM_003309 ENSG00000189241 TSPYL1 TSPYL TSPY like 1 protein-coding 1741.83 chr18 6521217 6522376 + 4.66667 NA intron (NR_120518, intron 2 of 5) L1MB2|LINE|L1 10380 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 1190.33-2 chr5 174951067 174951505 + 4.66667 NA intron (NR_046113, intron 2 of 2) intron (NR_046113, intron 2 of 2) 44445 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 977.667-2 chr20 50635868 50636473 + 4.66667 NA intron (NM_001290268, intron 1 of 21) intron (NM_001290268, intron 1 of 21) 748 NM_080829 140876 Hs.372578 NM_080829 ENSG00000042062 RIPOR3 C20orf175|C20orf176|FAM65C RIPOR family member 3 protein-coding 1561.5 chr12 128975852 128976849 + 4.66667 NA intron (NM_144669, intron 7 of 7) MER5A|DNA|hAT-Charlie 122872 NR_133646 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 743.833-3 chr8 120984798 120985081 + 4.66667 NA Intergenic Intergenic -172893 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 1690.67 chr6 146784774 146785457 + 4.66667 NA intron (NM_024694, intron 31 of 35) intron (NM_024694, intron 31 of 35) 18709 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 1190.67 chr12 62210180 62210768 + 4.66667 NA Intergenic Intergenic -17635 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 1851.33 chr3 192444034 192445851 + 4.66667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -35893 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 1310 chr10 43455355 43456159 + 4.66667 NA intron (NM_001355444, intron 1 of 3) CpG 18646 NM_001355444 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 1281 chr12 54201083 54201747 + 4.66667 NA Intergenic Intergenic -12421 NM_001351262 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 1086.33-3 chr5 150217957 150218747 + 4.66667 NA Intergenic Intergenic 28290 NM_014228 6534 Hs.241597 NM_014228 ENSG00000011083 SLC6A7 PROT solute carrier family 6 member 7 protein-coding 765.167 chr1 94025625 94026135 + 4.66667 NA intron (NM_000350, intron 30 of 49) L2a|LINE|L2 95268 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 602.001-2 chr2 24827591 24828034 + 4.66667 NA intron (NM_001320613, intron 14 of 21) intron (NM_001320613, intron 14 of 21) 34387 NM_001322101 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 1132.5-2 chr17 63406645 63407187 + 4.66667 NA intron (NM_025185, intron 20 of 25) intron (NM_025185, intron 20 of 25) 33351 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 869.834 chr2 116510209 116510452 + 4.66667 NA Intergenic L1PA16|LINE|L1 1166515 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1561.5-2 chr21 29089568 29090480 + 4.66667 NA intron (NM_001286622, intron 2 of 8) intron (NM_001286622, intron 2 of 8) -2230 NM_001286619 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 334.834-5 chr4 87375585 87375980 + 4.66667 NA intron (NM_016245, intron 2 of 6) intron (NM_016245, intron 2 of 6) 15406 NM_016245 51170 Hs.594923 NM_016245 ENSG00000198189 HSD17B11 17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2 hydroxysteroid 17-beta dehydrogenase 11 protein-coding 971.5 chr10 63084067 63084562 + 4.66667 NA Intergenic Intergenic -48933 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 674 chr19 39671914 39672440 + 4.66667 NA Intergenic HUERS-P3-int|LTR|ERV1 -7197 NR_034156 400696 Hs.456377 NM_207646 ENSG00000226025 LGALS17A - galectin 14 pseudogene pseudo 1218.67 chr17 65198749 65199266 + 4.66667 NA intron (NM_003835, intron 13 of 18) intron (NM_003835, intron 13 of 18) 61637 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 2085.33 chr1 91165004 91166505 + 4.66667 NA Intergenic LTR78|LTR|ERV1 -143499 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 1436-2 chr7 73855341 73856139 + 4.66667 NA Intergenic CpG -5419 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 826.167 chr5 135551559 135552264 + 4.66667 NA Intergenic Intergenic -15947 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 689.001 chr10 84352183 84352710 + 4.66667 NA intron (NM_018999, intron 1 of 10) intron (NM_018999, intron 1 of 10) 23857 NM_001284241 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 1338.67 chr2 190319531 190320374 + 4.66667 NA promoter-TSS (NM_014362) promoter-TSS (NM_014362) -126 NM_198047 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 1536.5 chr20 59525291 59526321 + 4.66667 NA Intergenic Intergenic -51703 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1086.83 chr2 53715377 53716153 + 4.66667 NA intron (NM_001201965, intron 5 of 8) intron (NM_001201965, intron 5 of 8) -52018 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 1132 chr2 207475008 207475491 + 4.66667 NA Intergenic Intergenic -54713 NR_163946 1509.17 chr1 159071711 159072735 + 4.66667 NA intron (NM_001348247, intron 1 of 4) intron (NM_001348247, intron 1 of 4) 4543 NM_004833 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 1936.17 chr2 212776230 212777402 + 4.66667 NA Intergenic Intergenic -18515 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 765.334 chr3 149968645 149968868 + 4.66667 NA intron (NM_053024, intron 1 of 2) intron (NM_053024, intron 1 of 2) 2139 NM_053024 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 617.333 chr11 64917240 64917564 + 4.66667 NA promoter-TSS (NM_001367971) promoter-TSS (NM_001367971) -193 NM_001367972 23130 Hs.370671 NM_015104 ENSG00000110046 ATG2A - autophagy related 2A protein-coding 2799.67 chr11 22333401 22335022 + 4.66667 NA Intergenic Intergenic -4170 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 2226.84 chr12 40921171 40922305 + 4.66667 NA intron (NM_001256064, intron 4 of 15) intron (NM_001256064, intron 4 of 15) 13381 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 1364 chr17 54891203 54891844 + 4.66667 NA Intergenic Intergenic -9168 NM_001321175 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 1644.5 chr18 6542727 6543737 + 4.66667 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 31816 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 1411.17 chr8 51525803 51526742 + 4.66667 NA intron (NM_144651, intron 4 of 22) intron (NM_144651, intron 4 of 22) 283173 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 618.667-3 chrX 47030267 47030719 + 4.66667 NA intron (NM_001077445, intron 6 of 10) intron (NM_001077445, intron 6 of 10) -47862 NM_001282848 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 1080.83 chr2 178396484 178397776 + 4.66667 NA 3' UTR (NM_001201481, exon 24 of 24) 3' UTR (NM_001201481, exon 24 of 24) -16529 NR_110205 101927027 Hs.715694 NR_110204 ENSG00000223960 CHROMR CHROME|PRKRA-AS1 cholesterol induced regulator of metabolism RNA ncRNA 1949.17 chr8 86702738 86704041 + 4.66667 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 40286 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 1713.33 chr1 146007064 146007879 + 4.66667 NA Intergenic Intergenic -10892 NM_006472 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 514-3 chrX 150689175 150689350 + 4.66667 NA Intergenic LTR40A1|LTR|ERVL -3700 NM_001353994 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 1333.83-2 chr17 48024673 48025615 + 4.66667 NA Intergenic CpG -7738 NR_162100 113218499 NR_162100 MIR10226 - microRNA 10226 ncRNA 1299-2 chr13 111067618 111068202 + 4.66667 NA Intergenic Intergenic -27928 NR_120415 101927802 Hs.559193 NR_120415 LINC00368 - long intergenic non-protein coding RNA 368 ncRNA 1637.17 chr1 224050635 224051416 + 4.66667 NA Intergenic Intergenic 58295 NR_136593 100287497 Hs.568390 NR_136590 LOC100287497 - septin 7 pseudogene pseudo 1677.67-2 chr9 76704525 76705263 + 4.66667 NA non-coding (NR_131751, exon 7 of 16) non-coding (NR_131751, exon 7 of 16) -12479 NM_001308049 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 1106.33 chr17 60638364 60639339 + 4.66667 NA intron (NM_003620, intron 3 of 5) intron (NM_003620, intron 3 of 5) 38668 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 767.333-2 chr5 95858826 95859122 + 4.66667 NA non-coding (NR_026936, exon 3 of 3) non-coding (NR_026936, exon 3 of 3) 6742 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 1094.17 chr19 15418823 15419532 + 4.66667 NA promoter-TSS (NR_111971) promoter-TSS (NR_111971) -189 NM_001291478 26993 Hs.399800 NM_014371 ENSG00000011243 AKAP8L HA95|HAP95|NAKAP|NAKAP95 A-kinase anchoring protein 8 like protein-coding 1988 chr12 85057204 85057935 + 4.66667 NA intron (NM_001079910, intron 8 of 26) intron (NM_001079910, intron 8 of 26) 21218 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 1514.83-3 chr4 95165705 95166396 + 4.66667 NA 3' UTR (NM_003728, exon 16 of 16) 3' UTR (NM_003728, exon 16 of 16) 74559 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 1320.83 chr9 105881648 105882341 + 4.66667 NA Intergenic Intergenic 187453 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 1005.17-2 chr17 51152701 51153580 + 4.66667 NA promoter-TSS (NM_000269) promoter-TSS (NM_000269) -396 NR_037149 654364 Hs.463456 NM_001018136 ENSG00000011052 NME1-NME2 NM23-LV|NMELV NME1-NME2 readthrough protein-coding 1180.5 chr10 112307675 112308507 + 4.66667 NA TTS (NR_028134) TTS (NR_028134) -8403 NR_106772 102465427 NR_106772 ENSG00000283688 MIR6715B hsa-mir-6715b microRNA 6715b ncRNA 1083.83-3 chr22 28600438 28600792 + 4.66667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 79250 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 1819.83 chr1 93021326 93022026 + 4.66667 NA Intergenic Intergenic -57559 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 1580.67-2 chr6 56314325 56315132 + 4.66667 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) -67148 NM_030820 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 956.666 chr10 29658608 29659606 + 4.66667 NA intron (NM_001323599, intron 2 of 38) intron (NM_001323599, intron 2 of 38) -24136 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 1179.83 chr12 119413103 119413784 + 4.66667 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 78714 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 1412 chr17 66906843 66907723 + 4.66667 NA Intergenic MER113|DNA|hAT-Charlie -57424 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 1342.5-2 chr20 41339907 41340846 + 4.66667 NA promoter-TSS (NR_126051) promoter-TSS (NR_126051) -445 NM_001301860 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 1780.17 chr7 31633646 31634643 + 4.66667 NA intron (NM_194300, intron 8 of 12) intron (NM_194300, intron 8 of 12) -52873 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 1067.83 chr3 25647667 25648204 + 4.66667 NA intron (NM_001330700, intron 1 of 35) L1MB2|LINE|L1 16437 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 547.667 chr1 108746449 108746668 + 4.66667 NA promoter-TSS (NM_007269) promoter-TSS (NM_007269) -116 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 1169.83 chr14 69129021 69129915 + 4.66667 NA intron (NM_003861, intron 1 of 8) intron (NM_003861, intron 1 of 8) 23131 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 1544.83 chr5 43389536 43390333 + 4.66667 NA intron (NM_001301874, intron 1 of 3) intron (NM_001301874, intron 1 of 3) 7203 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 1663.67 chrUn_KI270466v1 137 1215 + 4.66667 NA NA SAR|Satellite|Satellite NA NA 1023-2 chr6 122839423 122839919 + 4.66667 NA Intergenic Intergenic 50413 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 1401 chr12 121334603 121335472 + 4.66667 NA intron (NM_001137559, intron 7 of 16) intron (NM_001137559, intron 7 of 16) 17374 NM_016237 51433 Hs.7101 NM_016237 ENSG00000089053 ANAPC5 APC5 anaphase promoting complex subunit 5 protein-coding 1332.83 chr5 97161594 97162594 + 4.66667 NA 3' UTR (NM_018343, exon 10 of 10) 3' UTR (NM_018343, exon 10 of 10) -19483 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 982.334 chr20 7285890 7286373 + 4.66667 NA Intergenic Intergenic 21301 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 1262.33 chr1 110087830 110088372 + 4.66667 NA intron (NR_126382, intron 1 of 3) intron (NR_126382, intron 1 of 3) 5413 NR_126382 104355139 Hs.628193 NR_126382 ENSG00000258673 LINC01397 - long intergenic non-protein coding RNA 1397 ncRNA 1019.67 chr1 206911038 206911688 + 4.66667 NA intron (NM_005449, intron 4 of 7) MER33|DNA|hAT-Charlie 10578 NM_001193338 9214 Hs.58831 NM_005449 ENSG00000162894 FCMR FAIM3|TOSO Fc fragment of IgM receptor protein-coding 405 chr1 211655339 211655519 + 4.66667 NA TTS (NR_131925) TTS (NR_131925) 15621 NR_131925 105748977 Hs.553186 NR_131925 LINC01693 - long intergenic non-protein coding RNA 1693 ncRNA 1478.83 chr1 149961961 149962620 + 4.66667 NA intron (NM_020205, intron 6 of 11) intron (NM_020205, intron 6 of 11) -25411 NM_001145862 10903 Hs.425144 NM_006697 ENSG00000014914 MTMR11 CRA myotubularin related protein 11 protein-coding 1244.33-3 chr7 85890164 85890760 + 4.66667 NA Intergenic Intergenic 469340 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 1281.33 chr22 22342511 22343085 + 4.66667 NA Intergenic Intergenic 44700 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 1282.66 chr12 85029374 85030226 + 4.66667 NA intron (NM_001100917, intron 2 of 8) intron (NM_001100917, intron 2 of 8) 6477 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 1825.33-2 chr3 78645430 78646524 + 4.66667 NA intron (NM_002941, intron 21 of 30) intron (NM_002941, intron 21 of 30) 373482 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 1672.83 chr5 116947727 116948372 + 4.66667 NA Intergenic Intergenic -185840 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 1608 chr8 109346419 109347479 + 4.66667 NA TTS (NR_036471) TTS (NR_036471) 12602 NM_020189 56943 Hs.492555 NM_020189 ENSG00000120533 ENY2 DC6|Sus1|e(y)2 ENY2 transcription and export complex 2 subunit protein-coding 617.333-2 chr17 76279434 76279876 + 4.66667 NA intron (NM_032134, intron 12 of 18) intron (NM_032134, intron 12 of 18) 14307 NM_182565 283991 Hs.744981 NM_182565 ENSG00000185262 UBALD2 FAM100B UBA like domain containing 2 protein-coding 1193.67 chr4 73593448 73594091 + 4.66667 NA intron (NM_001270392, intron 2 of 9) intron (NM_001270392, intron 2 of 9) 26667 NM_001270391 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 1731.17-3 chr7 11427425 11428122 + 4.66667 NA intron (NM_015204, intron 14 of 26) intron (NM_015204, intron 14 of 26) 404425 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 1245.33-2 chr22 22955697 22956464 + 4.66667 NA Intergenic Intergenic 68264 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 1669.33 chr10 102009726 102010283 + 4.66667 NA exon (NM_024541, exon 12 of 26) exon (NM_024541, exon 12 of 26) 46169 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 1290.33 chr14 36553569 36554059 + 4.66667 NA Intergenic Intergenic 28800 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 848.167-2 chr4 89226889 89227528 + 4.66667 NA Intergenic Intergenic 80592 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 1531 chr1 184805268 184806244 + 4.66667 NA intron (NM_052966, intron 11 of 13) intron (NM_052966, intron 11 of 13) -50898 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 1409.17-2 chr8 26374088 26374735 + 4.66667 NA Intergenic Intergenic 8542 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 434.833 chr1 29793154 29793387 + 4.66667 NA Intergenic LTR41B|LTR|ERVL 244342 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 1225.17-2 chr17 79388438 79388915 + 4.66667 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 127472 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 768.667-2 chr14 54509469 54509882 + 4.66667 NA promoter-TSS (NM_006568) promoter-TSS (NM_006568) -231 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 1242.33 chr19 52237483 52238529 + 4.66667 NA Intergenic FRAM|SINE|Alu 15986 NR_106859 102466984 NR_106859 ENSG00000274380 MIR6801 hsa-mir-6801 microRNA 6801 ncRNA 1162.5-3 chr18 21600684 21601348 + 4.66667 NA promoter-TSS (NM_052911) promoter-TSS (NM_052911) -312 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 861.167 chr1 52001916 52003054 + 4.66667 NA Intergenic Intergenic -11785 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 455.167-3 chr12 219914 220300 + 4.66667 NA TTS (NM_016615) TTS (NM_016615) -5950 NM_001122848 6539 Hs.437174 NM_003044 ENSG00000111181 SLC6A12 BGT-1|BGT1|GAT2 solute carrier family 6 member 12 protein-coding 676.334 chr20 34312562 34312973 + 4.66667 NA promoter-TSS (NM_001161766) promoter-TSS (NM_001161766) -965 NM_001161766 191 Hs.388004 NM_000687 ENSG00000101444 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 819-3 chr5 172958855 172959373 + 4.66667 NA promoter-TSS (NM_016093) promoter-TSS (NM_016093) 205 NM_001317980 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 683.834 chr17 76465795 76466383 + 4.66667 NA 5' UTR (NM_001166579, exon 4 of 7) 5' UTR (NM_001166579, exon 4 of 7) -1514 NR_110548 15 Hs.431417 NM_001088 ENSG00000129673 AANAT DSPS|SNAT aralkylamine N-acetyltransferase protein-coding 800.167-2 chr15 62781858 62782446 + 4.66667 NA intron (NM_015059, intron 41 of 55) intron (NM_015059, intron 41 of 55) -41805 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 1248.67 chr9 34252877 34253480 + 4.66667 NA TTS (NM_001171204) TTS (NM_001171204) 74135 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 1743.17 chr6 39865165 39865854 + 4.66667 NA intron (NM_015345, intron 5 of 24) intron (NM_015345, intron 5 of 24) 31871 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 874.834-2 chr7 94448948 94449335 + 4.66667 NA Intergenic Intergenic 54580 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 1570.17 chr12 10674036 10674738 + 4.66667 NA promoter-TSS (NM_018423) promoter-TSS (NM_018423) -335 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 1294.33 chr19 53746261 53746986 + 4.66667 NA Intergenic LTR13|LTR|ERVK -2013 NR_030216 574494 NR_030216 ENSG00000207634 MIR521-1 MIRN521-1|mir-521-1 microRNA 521-1 ncRNA 1133.5 chr6 150815261 150815875 + 4.66667 NA intron (NM_001329803, intron 8 of 13) intron (NM_001329803, intron 8 of 13) -50111 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 1153.67-2 chr4 12852025 12852734 + 4.66667 NA Intergenic Intergenic 628928 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 1211.83-2 chr5 121949314 121950529 + 4.66667 NA Intergenic Intergenic -12054 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 2075.84 chr7 55254764 55256238 + 4.66667 NA intron (NR_110426, intron 1 of 3) CpG-25849 134 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 1689.33 chr10 77643686 77644557 + 4.66667 NA Intergenic Intergenic -6313 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 1177.33 chr11 78564391 78565270 + 4.66667 NA intron (NM_024678, intron 4 of 13) intron (NM_024678, intron 4 of 13) 10034 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 1622.83 chr16 24516786 24517452 + 4.66667 NA Intergenic Intergenic -22447 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 1459-2 chr3 15557383 15558054 + 4.66667 NA Intergenic Intergenic -36012 NM_080539 8292 Hs.146735 NM_005677 ENSG00000206561 COLQ CMS5|EAD collagen like tail subunit of asymmetric acetylcholinesterase protein-coding 1555.17 chr1 200510069 200510626 + 4.66667 NA Intergenic Intergenic -100311 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 815.5 chr10 32795549 32795804 + 4.66667 NA intron (NM_001321115, intron 30 of 43) L1M3f|LINE|L1 105796 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 1387.17 chr10 63157927 63158656 + 4.66667 NA Intergenic Intergenic 24963 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 1699.33 chr9 80174879 80175884 + 4.66667 NA Intergenic Intergenic 200358 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1665.67 chr10 80505520 80506277 + 4.66667 NA intron (NM_030927, intron 3 of 8) LTR24B|LTR|ERV1 30044 NR_120661 101929574 Hs.593663 NR_120661 ENSG00000226659 LOC101929574 - uncharacterized LOC101929574 ncRNA 1109.67 chr16 77235981 77236504 + 4.66667 NA Intergenic Intergenic 36834 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 970.667 chr1 53860548 53861098 + 4.66667 NA intron (NR_036639, intron 9 of 11) intron (NR_036639, intron 9 of 11) -22527 NM_001168551 55706 Hs.476525 NM_018087 ENSG00000058804 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 1039.83 chr16 3031571 3031936 + 4.66667 NA promoter-TSS (NR_047572) promoter-TSS (NR_047572) -728 NR_047572 100128770 Hs.666223 NR_047572 ENSG00000205890 LOC100128770 - uncharacterized LOC100128770 ncRNA 796-2 chr10 36779015 36779682 + 4.66667 NA Intergenic Intergenic -346509 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 979.667-2 chr11 100930107 100930629 + 4.66667 NA intron (NM_001367945, intron 8 of 25) intron (NM_001367945, intron 8 of 25) -3906 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 1055.83-3 chr4 181143047 181143418 + 4.66667 NA intron (NR_033918, intron 2 of 2) intron (NR_033918, intron 2 of 2) 15917 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 795.167 chr10 122435209 122435702 + 4.66667 NA 3' UTR (NM_001001974, exon 12 of 12) 3' UTR (NM_001001974, exon 12 of 12) 18490 NR_037506 100500866 NR_037506 ENSG00000265442 MIR3941 - microRNA 3941 ncRNA 852.667-2 chr9 69549361 69549983 + 4.66667 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 122699 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 1560.83 chr8 82307252 82308084 + 4.66667 NA Intergenic Intergenic -465382 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 836.333-3 chr6 131915130 131915762 + 4.66667 NA Intergenic Intergenic 35926 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 664.167-2 chr19 46395672 46395981 + 4.66667 NA Intergenic Intergenic 17738 NM_032040 83987 Hs.97876 NM_032040 ENSG00000169515 CCDC8 3M3|PPP1R20|p90 coiled-coil domain containing 8 protein-coding 1095.17-2 chr16 82639950 82640314 + 4.66667 NA intron (NM_001220488, intron 2 of 14) L2a|LINE|L2 13163 NM_001220489 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 1499.67 chr1 10941763 10942477 + 4.66667 NA Intergenic Intergenic 24567 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 1807.33 chr6 37207754 37208611 + 4.66667 NA Intergenic L2a|LINE|L2 38030 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 1786.17 chr12 52879445 52880589 + 4.66667 NA Intergenic Intergenic 18967 NR_162090 113218482 NR_162090 MIR9898 - microRNA 9898 ncRNA 1462.34 chr8 101301278 101302001 + 4.66667 NA Intergenic Intergenic -67254 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 1632 chr1 247389855 247390744 + 4.66667 NA Intergenic Intergenic -25857 NM_001127461 114548 Hs.159483 NM_004895 ENSG00000162711 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1 NLR family pyrin domain containing 3 protein-coding 766.333-2 chr22 33018184 33018753 + 4.66667 NA intron (NM_003490, intron 1 of 13) intron (NM_003490, intron 1 of 13) -11647 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 1193.67-2 chr7 29408668 29409389 + 4.66667 NA intron (NM_001293072, intron 6 of 12) intron (NM_001293072, intron 6 of 12) -70684 NR_120525 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 487.5-12 chr6 112180021 112180340 + 4.66667 NA intron (NM_001105206, intron 9 of 38) intron (NM_001105206, intron 9 of 38) -56416 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 1739 chr1 234326493 234327212 + 4.66667 NA Intergenic Intergenic 20385 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 1447 chr2 75466751 75467387 + 4.66667 NA Intergenic Intergenic -56999 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 1911 chr8 56447656 56448573 + 4.66667 NA intron (NR_125813, intron 1 of 3) CpG -1473 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 1285.5 chr11 6022661 6023378 + 4.66667 NA Intergenic MamGypLTR3|LTR|Gypsy 4722 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 946.667-2 chr5 103475812 103476245 + 4.66667 NA Intergenic Intergenic 65957 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 1465.83-2 chr5 32612797 32613410 + 4.66667 NA Intergenic Intergenic 27546 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 1839.67 chr2 218897955 218899007 + 4.66667 NA Intergenic CpG 17629 NM_025216 80326 Hs.121540 NM_025216 ENSG00000135925 WNT10A OODD|SSPS|STHAG4 Wnt family member 10A protein-coding 626.833 chr7 6306436 6306854 + 4.66667 NA Intergenic L1MB3|LINE|L1 -34021 NM_001367580 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 1814 chr18 9971102 9971928 + 4.66667 NA Intergenic Intergenic 57499 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 1190.83-3 chr21 29372023 29372780 + 4.66667 NA promoter-TSS (NR_046564) promoter-TSS (NR_046564) -100 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 743.833-4 chrX 153928307 153928625 + 4.66667 NA TTS (NM_001256120) TTS (NM_001256120) -2202 NM_001666 393 Hs.701324 NM_001666 ENSG00000089820 ARHGAP4 C1|RGC1|RhoGAP4|SrGAP4|p115 Rho GTPase activating protein 4 protein-coding 1668.67 chr20 57596577 57597493 + 4.66667 NA Intergenic Intergenic 23391 NM_001160417 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 1137.17 chr11 82867344 82868006 + 4.66667 NA intron (NM_005040, intron 1 of 8) intron (NM_005040, intron 1 of 8) 32755 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 684.167-2 chr3 42247340 42247725 + 4.66667 NA Intergenic Tigger7|DNA|TcMar-Tigger 16415 NM_001174138 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 1498.67 chr8 52112159 52112924 + 4.66667 NA 3' UTR (NM_001352827, exon 27 of 27) 3' UTR (NM_001352827, exon 27 of 27) -81821 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 1315.67-2 chr11 44095135 44096104 + 4.66667 NA promoter-TSS (NM_001178083) promoter-TSS (NM_001178083) -59 NM_001178083 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 1078.83-2 chr14 72948478 72949054 + 4.66667 NA intron (NM_001352448, intron 8 of 13) intron (NM_001352448, intron 8 of 13) 22302 NM_001352447 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 676.5-2 chr12 53324597 53325004 + 4.66667 NA Intergenic L2b|LINE|L2 -3190 NM_001173466 8086 Hs.369144 NM_015665 ENSG00000094914 AAAS AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003 aladin WD repeat nucleoporin protein-coding 1027.17-2 chr8 28072649 28073633 + 4.66667 NA intron (NM_001010906, intron 2 of 18) AluJb|SINE|Alu 10795 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 1319.83 chr11 10207833 10208519 + 4.66667 NA intron (NM_030962, intron 1 of 39) MIRc|SINE|MIR 86031 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 985-2 chr2 78351119 78351636 + 4.66667 NA Intergenic Intergenic -60646 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 1247.5 chr2 18520285 18521159 + 4.66667 NA Intergenic Intergenic 39931 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 685.667 chrX 66731549 66732177 + 4.66667 NA Intergenic Intergenic -92565 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 1571 chr10 63719796 63720832 + 4.66667 NA Intergenic Intergenic -198424 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 1034.17 chr22 46542248 46542726 + 4.66667 NA Intergenic Intergenic -4867 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 705.833-2 chr2 74199136 74199416 + 4.66667 NA intron (NM_006636, intron 1 of 7) CpG 661 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 1808.67-2 chr18 3869687 3871234 + 4.66667 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 3842 NM_001242764 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 1342.5 chr15 67456667 67457354 + 4.66667 NA intron (NR_040052, intron 3 of 5) intron (NR_040052, intron 3 of 5) 63963 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 432.834-4 chr20 53547865 53548181 + 4.66667 NA Intergenic Intergenic -4747 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 1377.17-2 chr8 104442062 104442938 + 4.66667 NA intron (NM_001385, intron 4 of 9) intron (NM_001385, intron 4 of 9) 24555 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 752.499 chr5 42889459 42889751 + 4.66667 NA Intergenic Intergenic -77529 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 845.667 chr6 41318824 41319752 + 4.66667 NA Intergenic Intergenic -16320 NM_001199509 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 1332.17 chr3 36700885 36701907 + 4.66667 NA Intergenic Intergenic 38465 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 1006.17-2 chr2 165239106 165239762 + 4.66667 NA promoter-TSS (NM_001040142) promoter-TSS (NM_001040142) 20 NM_001371246 1080.67-2 chr1 236489871 236490322 + 4.66667 NA Intergenic Intergenic -28118 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 1549 chr13 112942656 112943332 + 4.66667 NA Intergenic Intergenic 25644 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 1237-2 chr5 44332369 44332815 + 4.66667 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -56140 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 1328.5 chr21 28940089 28940804 + 4.66667 NA intron (NM_015565, intron 25 of 29) intron (NM_015565, intron 25 of 29) 52431 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 1191.83 chr12 63825650 63826418 + 4.66667 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat 2371 NR_162118 113218505 NR_162118 MIR10527 - microRNA 10527 ncRNA 433.667-3 chr7 67371738 67372062 + 4.66667 NA Intergenic Intergenic 35924 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 1090.83 chr10 7525327 7525981 + 4.66667 NA Intergenic Intergenic 94019 NM_032817 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 1234.33-2 chr6 39361948 39362852 + 4.66667 NA intron (NM_001289020, intron 16 of 21) intron (NM_001289020, intron 16 of 21) -39432 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 1347-2 chr6 33585513 33586160 + 4.66667 NA TTS (NR_027908) TTS (NR_027908) 2137 NR_028361 449520 Hs.582973 NM_001005478 ENSG00000204188 GGNBP1 - gametogenetin binding protein 1 (pseudogene) pseudo 1443-2 chr3 68893605 68894333 + 4.66667 NA intron (NM_001005527, intron 1 of 5) intron (NM_001005527, intron 1 of 5) 38578 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 1270.83 chr4 78951649 78952467 + 4.66667 NA Intergenic Intergenic -12620 NR_146465 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 1659 chr3 87503805 87504502 + 4.66667 NA Intergenic Intergenic -227569 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 1714.67 chr8 90571019 90571848 + 4.66667 NA Intergenic Intergenic 34630 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 1246.17 chr1 13665587 13666119 + 4.66667 NA Intergenic Intergenic -34335 NM_001135610 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 1564.33 chr14 49173714 49174388 + 4.66667 NA Intergenic L1MA8|LINE|L1 412329 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 530.833-4 chr8 54010404 54010733 + 4.5 NA intron (NM_006756, intron 1 of 9) intron (NM_006756, intron 1 of 9) 11880 NR_109901 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 1146.83 chr12 65313330 65313952 + 4.5 NA intron (NM_001031679, intron 2 of 6) intron (NM_001031679, intron 2 of 6) 34654 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 1212.33 chr1 78617287 78617959 + 4.5 NA Intergenic LTR41|LTR|ERVL -2825 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 2976.33 chr4 54233243 54234801 + 4.5 NA promoter-TSS (NM_001347830) promoter-TSS (NM_001347830) 62 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 557.666-2 chr19 49546864 49547405 + 4.5 NA Intergenic Intergenic 19131 NM_020650 57333 Hs.567550 NM_020650 ENSG00000142552 RCN3 RLP49 reticulocalbin 3 protein-coding 1638 chr8 109333873 109334736 + 4.5 NA promoter-TSS (NR_036471) promoter-TSS (NR_036471) -43 NR_036472 56943 Hs.492555 NM_020189 ENSG00000120533 ENY2 DC6|Sus1|e(y)2 ENY2 transcription and export complex 2 subunit protein-coding 1363-2 chr4 87848794 87849172 + 4.5 NA Intergenic Intergenic 14280 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 931.834 chr10 117496429 117496775 + 4.5 NA intron (NR_002791, intron 2 of 3) L2a|LINE|L2 -45843 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 1418.67-2 chr2 137838351 137839126 + 4.5 NA Intergenic Intergenic 89194 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 528.334-2 chr2 238462788 238463512 + 4.5 NA Intergenic L1MB7|LINE|L1 36223 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 1288.17 chr20 44384207 44384787 + 4.5 NA intron (NR_109949, intron 3 of 3) MLT1I|LTR|ERVL-MaLR 11209 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 1699.83 chr6 70884166 70884986 + 4.5 NA intron (NM_080742, intron 2 of 3) L2c|LINE|L2 72484 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 1128.5 chr6 36623296 36623835 + 4.5 NA Intergenic Intergenic -1053 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 867.667-2 chr11 74453321 74453555 + 4.5 NA Intergenic L2a|LINE|L2 14117 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 1147.5-2 chr18 43587511 43588180 + 4.5 NA Intergenic Intergenic -310355 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 946.667-3 chrX 99301789 99302246 + 4.5 NA Intergenic Intergenic 1108256 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 860.5-2 chr17 50397488 50397831 + 4.5 NA promoter-TSS (NM_018509) promoter-TSS (NM_018509) -136 NM_018509 55379 Hs.370927 NM_018509 ENSG00000108829 LRRC59 PRO1855|p34 leucine rich repeat containing 59 protein-coding 1711.33-2 chr22 25048488 25049162 + 4.5 NA intron (NM_001145206, intron 3 of 10) intron (NM_001145206, intron 3 of 10) 20851 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 889 chr14 60562241 60562571 + 4.5 NA Intergenic Intergenic 53260 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 1829.83 chr12 53321263 53322038 + 4.5 NA promoter-TSS (NM_001173466) promoter-TSS (NM_001173466) -40 NM_001173466 8086 Hs.369144 NM_015665 ENSG00000094914 AAAS AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003 aladin WD repeat nucleoporin protein-coding 1303.67 chr8 13377315 13378092 + 4.5 NA intron (NM_024767, intron 4 of 4) intron (NM_024767, intron 4 of 4) -100919 NM_001348083 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 1494.33 chr13 96958075 96958809 + 4.5 NA intron (NR_051966, intron 1 of 2) intron (NR_051966, intron 1 of 2) 25730 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 1241.83-3 chr8 67063703 67064314 + 4.5 NA promoter-TSS (NM_001363131) promoter-TSS (NM_001363131) -360 NM_024790 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 1051-2 chr15 25507862 25508640 + 4.5 NA Intergenic Intergenic -69195 NM_000462 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 1354.5 chr6 149933893 149934611 + 4.5 NA promoter-TSS (NR_134598) promoter-TSS (NR_134598) -261 NR_134598 105378052 Hs.549678 NR_134598 ENSG00000216621 LOC105378052 - uncharacterized LOC105378052 ncRNA 1170.33 chr10 89425818 89426669 + 4.5 NA Intergenic Intergenic 11675 NM_012420 24138 Hs.252839 NM_012420 ENSG00000152778 IFIT5 ISG58|P58|RI58 interferon induced protein with tetratricopeptide repeats 5 protein-coding 1019 chr2 102240634 102241407 + 4.5 NA Intergenic Intergenic 53706 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 2193.5 chr17 73428935 73430379 + 4.5 NA intron (NM_001144952, intron 12 of 44) intron (NM_001144952, intron 12 of 44) -84026 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 1115.67-2 chr3 151838670 151839440 + 4.5 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) 24939 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 1395.17 chr16 19086202 19087183 + 4.5 NA Intergenic CpG 18045 NM_001370489 10229 Hs.157113 NM_016138 ENSG00000167186 COQ7 CAT5|CLK-1|CLK1|COQ10D8 coenzyme Q7, hydroxylase protein-coding 1888.83 chr12 13277540 13278619 + 4.5 NA Intergenic Intergenic 81353 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 1002.33 chr16 87203078 87203415 + 4.5 NA Intergenic L1MD2|LINE|L1 -8869 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 809 chr7 76291467 76292066 + 4.5 NA Intergenic X9_LINE|LINE|L1 -10907 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 1504.33 chr16 84970454 84971154 + 4.5 NA Intergenic Intergenic 40731 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 1532.83-2 chr6 133837524 133838420 + 4.5 NA intron (NR_027030, intron 2 of 2) intron (NR_027030, intron 2 of 2) 16825 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 1210.67 chr10 100535404 100536156 + 4.5 NA promoter-TSS (NM_017902) promoter-TSS (NM_017902) -163 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 1541 chr7 95916296 95917221 + 4.5 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 144252 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 1361.33 chr2 147937523 147938282 + 4.5 NA intron (NM_001190881, intron 10 of 10) intron (NM_001190881, intron 10 of 10) 82835 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 1364.83 chr15 60328240 60329332 + 4.5 NA Intergenic Charlie20a|DNA|hAT-Charlie 69200 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 1441.33 chr5 101678342 101679356 + 4.5 NA Intergenic MamRTE1|LINE|RTE-BovB 617435 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 1071.17 chr15 69058806 69059436 + 4.5 NA 3' UTR (NM_001184779, exon 16 of 16) 3' UTR (NM_001184779, exon 16 of 16) -21729 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 1171-3 chr9 91734237 91734780 + 4.5 NA intron (NM_001318204, intron 5 of 7) intron (NM_001318204, intron 5 of 7) -98163 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 1740.17 chr11 95835790 95836777 + 4.5 NA exon (NM_201278, exon 16 of 17) exon (NM_201278, exon 16 of 17) 45785 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 724.667-2 chr21 44793487 44793740 + 4.5 NA intron (NM_003343, intron 1 of 5) intron (NM_003343, intron 1 of 5) 8207 NM_001202489 7327 Hs.529420 NM_003343 ENSG00000184787 UBE2G2 UBC7 ubiquitin conjugating enzyme E2 G2 protein-coding 956.166 chr1 21270154 21270618 + 4.5 NA intron (NM_001113347, intron 2 of 16) intron (NM_001113347, intron 2 of 16) 9229 NM_001113347 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 1653 chr13 43905216 43906048 + 4.5 NA Intergenic Intergenic 25728 NM_001350642 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 1061.67-2 chr10 30639777 30640445 + 4.5 NA Intergenic Intergenic -10358 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 2037.33 chr4 72302910 72304126 + 4.5 NA intron (NM_014243, intron 17 of 21) L1ME4b|LINE|L1 264386 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 567.333-3 chr1 183915937 183916323 + 4.5 NA intron (NM_001297669, intron 16 of 18) intron (NM_001297669, intron 16 of 18) 111010 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 1362.33 chr20 43749468 43750131 + 4.5 NA Intergenic Intergenic -22797 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 773.833-3 chr2 208175264 208175958 + 4.5 NA intron (NM_001099334, intron 6 of 8) intron (NM_001099334, intron 6 of 8) -12022 NM_014617 1418 Hs.122566 NM_014617 ENSG00000168582 CRYGA CRY-g-A|CRYG1|CRYG5 crystallin gamma A protein-coding 1370.33 chr2 174462342 174463094 + 4.5 NA intron (NM_001267051, intron 6 of 14) intron (NM_001267051, intron 6 of 14) 24311 NM_001033045 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 1028.17-2 chrX 29478606 29479315 + 4.5 NA intron (NM_014271, intron 5 of 10) L2a|LINE|L2 -95318 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 1673 chr2 121076635 121077580 + 4.5 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 208095 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 475.833 chr1 204127625 204127877 + 4.5 NA TTS (NM_005686) TTS (NM_005686) -13657 NR_123739 101929441 Hs.736889 NR_123739 ENSG00000230550 ERLNC1 ElncRNA1|TC0101441 estrogen receptor responsive lncRNA 1 ncRNA 1002.83 chr14 20454650 20455449 + 4.5 NA promoter-TSS (NM_080648) promoter-TSS (NM_080648) -177 NM_080649 328 Hs.73722 NM_001641 ENSG00000100823 APEX1 APE|APE1|APEN|APEX|APX|HAP1|REF1 apurinic/apyrimidinic endodeoxyribonuclease 1 protein-coding 1683.33 chr2 42089223 42090122 + 4.5 NA Intergenic Intergenic 41651 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 1945 chr18 80157016 80158186 + 4.5 NA 3' UTR (NM_032510, exon 3 of 3) 3' UTR (NM_032510, exon 3 of 3) 9677 NR_028339 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 1486 chr1 41432292 41433254 + 4.5 NA Intergenic Intergenic 51910 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 1235.5-2 chr4 44425447 44426284 + 4.5 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 22944 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 2110.17 chr10 6677591 6678945 + 4.5 NA Intergenic Intergenic 43198 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 1718.5-2 chr6 141562096 141563433 + 4.5 NA Intergenic Intergenic 526035 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 577 chr17 4215272 4215888 + 4.5 NA intron (NR_047571, intron 3 of 23) intron (NR_047571, intron 3 of 23) 48267 NM_001257999 51479 Hs.696087 NM_016376 ENSG00000185722 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 1182 chr11 33835002 33835671 + 4.5 NA Intergenic LTR84a|LTR|ERVL 34542 NM_001142316 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1185.67 chr12 111404954 111405800 + 4.5 NA promoter-TSS (NM_005475) promoter-TSS (NM_005475) -571 NM_005475 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 921.999 chrX 74015353 74015994 + 4.5 NA intron (NR_024582, intron 3 of 4) L1MA5|LINE|L1 71349 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 966.5 chr11 103601372 103601693 + 4.5 NA Intergenic MER39|LTR|ERV1 -248374 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 1009.5-2 chr6 44593392 44593844 + 4.5 NA Intergenic MIR|SINE|MIR -41737 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 1700.66 chr6 27161608 27162638 + 4.5 NA Intergenic Intergenic 14497 NR_036096 100422934 NR_036096 ENSG00000265565 MIR3143 mir-3143 microRNA 3143 ncRNA 921-2 chr22 50620555 50620822 + 4.5 NA Intergenic Intergenic 7464 NM_001085428 410 Hs.88251 NM_000487 ENSG00000100299 ARSA ASA|MLD arylsulfatase A protein-coding 593.5 chr12 49945278 49945914 + 4.5 NA Intergenic LTR85c|LTR|Gypsy? -5145 NM_000486 359 Hs.130730 NM_000486 ENSG00000167580 AQP2 AQP-CD|WCH-CD aquaporin 2 protein-coding 1766.17 chr8 54431374 54432302 + 4.5 NA Intergenic Intergenic -26097 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 1626.17 chr15 65304190 65305257 + 4.5 NA promoter-TSS (NR_002757) promoter-TSS (NR_002757) 46 NR_002757 26832 NR_002757 ENSG00000200156 RNU5B-1 RNU5B|RNU5B-1P|U5B1 RNA, U5B small nuclear 1 snRNA 1325 chr12 48853117 48853911 + 4.5 NA Intergenic MIRb|SINE|MIR -1351 NM_004818 9416 Hs.130098 NM_004818 ENSG00000174243 DDX23 PRPF28|SNRNP100|U5-100K|U5-100KD|prp28 DEAD-box helicase 23 protein-coding 1437.33-3 chr2 120174982 120175790 + 4.5 NA 3' UTR (NM_020909, exon 25 of 25) 3' UTR (NM_020909, exon 25 of 25) 48014 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 1139.83 chr17 31216056 31216754 + 4.5 NA intron (NM_001042492, intron 13 of 57) intron (NM_001042492, intron 13 of 57) 80834 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 1656-2 chr4 41888081 41889074 + 4.5 NA Intergenic Intergenic -5966 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 1208.17 chr8 130881328 130881843 + 4.5 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 159324 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 924 chr10 51063412 51063889 + 4.5 NA intron (NR_120678, intron 1 of 1) intron (NR_120678, intron 1 of 1) 4902 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 1325.83-2 chr16 86519857 86520514 + 4.5 NA Intergenic Intergenic 9658 NM_001451 2294 Hs.155591 NM_001451 ENSG00000103241 FOXF1 ACDMPV|FKHL5|FREAC1 forkhead box F1 protein-coding 1362 chr17 28726345 28727080 + 4.5 NA promoter-TSS (NM_138463) promoter-TSS (NM_138463) 219 NM_001160407 116238 Hs.499952 NM_138463 ENSG00000160606 TLCD1 - TLC domain containing 1 protein-coding 1238.5 chr2 176454898 176455558 + 4.5 NA Intergenic Intergenic 145824 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 955.167 chr2 161222851 161223518 + 4.5 NA TTS (NR_110593) TTS (NR_110593) -21555 NR_110164 100996579 Hs.660929 NR_110163 ENSG00000227403 LINC01806 - long intergenic non-protein coding RNA 1806 ncRNA 914.001 chr6 147390850 147391155 + 4.5 NA TTS (NM_001127715) TTS (NM_001127715) -117688 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 1310.67 chr16 3939044 3939631 + 4.5 NA Intergenic CpG 11107 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 1530.67 chr9 14768431 14769775 + 4.5 NA intron (NR_163242, intron 3 of 11) intron (NR_163242, intron 3 of 11) 10430 NM_001177704 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 1084.67 chr1 92831524 92832401 + 4.5 NA promoter-TSS (NR_146333) promoter-TSS (NR_146333) -24 NR_146333 6125 Hs.532359 NM_000969 ENSG00000122406 RPL5 L5|MSTP030|PPP1R135|uL18 ribosomal protein L5 protein-coding 760-3 chr14 73458516 73458882 + 4.5 NA promoter-TSS (NM_001320114) promoter-TSS (NM_001320114) -119 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 1198.33-2 chr1 214331758 214332459 + 4.5 NA exon (NM_020197, exon 10 of 12) exon (NM_020197, exon 10 of 12) 50949 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 613.167 chr11 57800631 57801116 + 4.5 NA intron (NM_001331, intron 6 of 18) intron (NM_001331, intron 6 of 18) 39071 NM_001085459 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 1556.83 chr12 108731575 108732197 + 4.5 NA promoter-TSS (NM_014325) promoter-TSS (NM_014325) -336 NM_014325 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 1516.5-2 chr19 35495105 35495826 + 4.5 NA Intergenic Intergenic -5001 NM_001244847 388533 Hs.112457 NM_207392 ENSG00000188508 KRTDAP KDAP|UNQ467 keratinocyte differentiation associated protein protein-coding 780-3 chr4 49657237 49657798 + 4.5 NA Intergenic (GAATG)n|Satellite|Satellite 670875 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1126.17-2 chr17 79045806 79046111 + 4.5 NA intron (NR_049769, intron 2 of 3) intron (NR_049769, intron 2 of 3) 11659 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 1130.33 chr1 204431093 204431747 + 4.5 NA intron (NM_002646, intron 29 of 33) intron (NM_002646, intron 29 of 33) -19603 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 1606.5 chr1 66242317 66243310 + 4.5 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -89295 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 826.5-2 chr1 28409682 28409938 + 4.5 NA intron (NM_001350160, intron 3 of 14) intron (NM_001350160, intron 3 of 14) -28340 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 1094.83-2 chr21 34692540 34693492 + 4.5 NA intron (NM_053277, intron 1 of 5) intron (NM_053277, intron 1 of 5) 24022 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 1157.33-2 chr17 56819554 56820084 + 4.5 NA intron (NM_001085430, intron 4 of 7) intron (NM_001085430, intron 4 of 7) 14101 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 583.667-5 chr3 49449034 49449369 + 4.5 NA Intergenic Intergenic -19502 NM_001177643 1605 Hs.76111 NM_004393 ENSG00000173402 DAG1 156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9 dystroglycan 1 protein-coding 868.834-3 chr4 159202951 159203401 + 4.5 NA intron (NM_001351724, intron 3 of 30) intron (NM_001351724, intron 3 of 30) -24456 NM_001351726 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 1560.33-2 chr3 37779288 37780363 + 4.5 NA intron (NM_002207, intron 24 of 27) intron (NM_002207, intron 24 of 27) 81955 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 1623.67 chr1 109639622 109640810 + 4.5 NA Intergenic Intergenic -15860 NR_024538 2948 Hs.348387 NM_000850 ENSG00000168765 GSTM4 GSTM4-4|GTM4 glutathione S-transferase mu 4 protein-coding 1332.5 chr11 124071107 124071784 + 4.5 NA Intergenic Intergenic -32444 NM_001004463 390265 Hs.553761 NM_001004463 ENSG00000182634 OR10G7 OR11-283 olfactory receptor family 10 subfamily G member 7 protein-coding 1826.33 chr8 130880392 130881254 + 4.5 NA intron (NM_001115, intron 8 of 17) MER94|DNA|hAT-Blackjack 160086 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 1893.5 chr5 173293849 173294900 + 4.5 NA Intergenic Intergenic -9356 NR_162132 113219469 NR_162132 MIR12118 - microRNA 12118 ncRNA 819.001 chr5 41856439 41856867 + 4.5 NA intron (NR_157114, intron 3 of 15) intron (NR_157114, intron 3 of 15) -12996 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 1679-2 chr19 40750516 40751186 + 4.5 NA promoter-TSS (NM_001353809) promoter-TSS (NM_001353809) -298 NR_148548 284325 Hs.585105 NM_198476 ENSG00000188493 C19orf54 - chromosome 19 open reading frame 54 protein-coding 1618.17 chr5 58460446 58461180 + 4.5 NA promoter-TSS (NM_001252226) promoter-TSS (NM_001252226) -674 NM_001252226 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 1661 chr11 45771122 45772456 + 4.5 NA intron (NR_027134, intron 1 of 1) intron (NR_027134, intron 1 of 1) 357 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 LINC02716 DKFZp779M0652 long intergenic non-protein coding RNA 2716 ncRNA 1182.17 chr7 30510072 30510968 + 4.5 NA Intergenic MIR|SINE|MIR -5679 NM_001199816 79017 Hs.530024 NM_024051 ENSG00000006625 GGCT C7orf24|CRF21|GCTG|GGC gamma-glutamylcyclotransferase protein-coding 1400.67 chr14 74038098 74039236 + 4.5 NA intron (NM_025057, intron 4 of 11) intron (NM_025057, intron 4 of 11) 19318 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 1185.67-3 chr20 38057094 38058069 + 4.5 NA exon (NM_021215, exon 4 of 7) exon (NM_021215, exon 4 of 7) 23835 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 1273.83 chr12 49347376 49347856 + 4.5 NA intron (NM_024902, intron 1 of 2) intron (NM_024902, intron 1 of 2) 728 NM_024902 79962 Hs.659300 NM_024902 ENSG00000178401 DNAJC22 wus DnaJ heat shock protein family (Hsp40) member C22 protein-coding 1064.67 chr1 177948131 177948821 + 4.5 NA intron (NR_151492, intron 21 of 22) MIRc|SINE|MIR 21446 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 1298-2 chr7 112550204 112550911 + 4.5 NA Intergenic LTR41C|LTR|ERVL -67508 NR_110159 100996249 Hs.561749 NR_110159 LOC100996249 - uncharacterized LOC100996249 ncRNA 942.167-2 chr2 121974602 121975417 + 4.5 NA Intergenic Intergenic 219358 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 1869.33 chr10 24196355 24197195 + 4.5 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -12016 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 849.5-2 chr5 77867271 77867584 + 4.5 NA Intergenic Intergenic -17229 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 1104.5 chr1 56584804 56585470 + 4.5 NA Intergenic Intergenic -5574 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 543.667 chr10 67855529 67856001 + 4.5 NA Intergenic Intergenic -17577 NM_021800 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 1408.5 chr1 116724519 116725273 + 4.5 NA Intergenic Intergenic -29534 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 1588.33-5 chr4 122757562 122758435 + 4.5 NA Intergenic Intergenic 25294 NM_152618 166379 Hs.400698 NM_152618 ENSG00000181004 BBS12 C4orf24 Bardet-Biedl syndrome 12 protein-coding 933.333 chr1 23637307 23637998 + 4.5 NA intron (NM_001348075, intron 4 of 6) intron (NM_001348075, intron 4 of 6) 10318 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 1403.5-2 chr3 50614015 50614491 + 4.5 NA intron (NM_001243926, intron 3 of 12) intron (NM_001243926, intron 3 of 12) 2391 NM_001243926 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 1504.5-2 chr19 41263482 41264325 + 4.5 NA promoter-TSS (NM_001321208) promoter-TSS (NM_001321208) -469 NM_001321208 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 1637-2 chr11 102666103 102667153 + 4.5 NA Intergenic Intergenic 39141 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 1086 chr21 18368994 18369680 + 4.5 NA intron (NM_002772, intron 6 of 24) intron (NM_002772, intron 6 of 24) 34448 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 978.5 chr5 40904459 40905144 + 4.5 NA Intergenic Intergenic -4696 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 813.333 chr14 64343336 64344403 + 4.5 NA Intergenic L1MC4|LINE|L1 3742 NR_033777 441687 Hs.685242 NR_033777 TEX21P - testis expressed 21, pseudogene pseudo 728.333 chr11 36266187 36266612 + 4.5 NA Intergenic Intergenic 23025 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 573.666-3 chr16 87017414 87017669 + 4.5 NA Intergenic Intergenic -40243 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 813.168 chr10 80596557 80597045 + 4.5 NA intron (NM_207372, intron 4 of 6) intron (NM_207372, intron 4 of 6) -52996 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 1903-2 chr3 4633208 4634008 + 4.5 NA intron (NM_001168272, intron 5 of 60) intron (NM_001168272, intron 5 of 60) 117982 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 411 chr2 163133026 163133298 + 4.5 NA Intergenic Intergenic -294395 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 753.667 chr19 10653846 10654230 + 4.5 NA promoter-TSS (NM_017620) promoter-TSS (NM_017620) -166 NR_024333 147727 Hs.631616 NR_024333 ENSG00000267100 ILF3-DT ILF3-AS1 ILF3 divergent transcript ncRNA 1089.67 chr5 154180242 154180771 + 4.5 NA Intergenic MER5B|DNA|hAT-Charlie -10227 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 854.166-3 chr8 98163487 98164169 + 4.5 NA Intergenic Intergenic 45988 NM_015029 10940 Hs.252828 NM_015029 ENSG00000104356 POP1 ANXD2 POP1 homolog, ribonuclease P/MRP subunit protein-coding 1267 chr2 129849643 129850380 + 4.5 NA Intergenic Intergenic 27480 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 1546.83 chr3 125585549 125586262 + 4.5 NA intron (NM_022776, intron 1 of 12) intron (NM_022776, intron 1 of 12) 9592 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 1674.33 chr8 132488922 132490330 + 4.5 NA Intergenic Intergenic -8531 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 1061.17 chr11 70467446 70468082 + 4.5 NA TTS (NM_012309) TTS (NM_012309) 69235 NM_001184740 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 1332-2 chr14 91177037 91177759 + 4.5 NA intron (NM_001102368, intron 7 of 13) intron (NM_001102368, intron 7 of 13) 50972 NR_003709 100124539 Hs.693444 NR_003709 ENSG00000221102 SNORA11B - small nucleolar RNA, H/ACA box 11B snoRNA 1052.5 chr8 117861917 117862451 + 4.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 58729 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 602.333-2 chr3 56702440 56702895 + 4.5 NA Intergenic Intergenic -19402 NM_001365638 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 815.666-2 chr7 25259354 25259878 + 4.5 NA Intergenic Intergenic -31130 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 1414.67-2 chr6 46089903 46090531 + 4.5 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) -9869 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 1241.83 chr16 23434289 23434980 + 4.5 NA intron (NM_153603, intron 5 of 16) intron (NM_153603, intron 5 of 16) 18555 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 551.833-2 chr3 184811803 184812239 + 4.5 NA promoter-TSS (NM_015303) promoter-TSS (NM_015303) -122 NM_001349297 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 1514.17 chr20 44190075 44190996 + 4.5 NA Intergenic AluJb|SINE|Alu -2957 NM_020433 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 1069.67 chr6 39347556 39348238 + 4.5 NA intron (NM_001289020, intron 18 of 21) intron (NM_001289020, intron 18 of 21) -24929 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 1577 chr3 116139580 116140468 + 4.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -220000 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 2047.17 chr6 75210796 75212254 + 4.5 NA Intergenic Intergenic -5472 NM_080645 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 893.666 chr1 33127041 33127725 + 4.5 NA Intergenic CpG 45205 NM_001350402 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 1130.5 chr1 67213908 67214559 + 4.5 NA intron (NM_144701, intron 6 of 10) intron (NM_144701, intron 6 of 10) 47779 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 1183.83-2 chr7 107743186 107743818 + 4.5 NA promoter-TSS (NM_024814) promoter-TSS (NM_024814) 130 NR_144536 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 1101.33-2 chr5 141134768 141135635 + 4.5 NA promoter-TSS (NM_015669) promoter-TSS (NM_015669) -5 NM_015669 26167 Hs.119693 NM_015669 ENSG00000113209 PCDHB5 PCDH-BETA5 protocadherin beta 5 protein-coding 873.667-3 chr8 140159525 140160090 + 4.5 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -59272 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1014.5-4 chr8 69941968 69942755 + 4.5 NA Intergenic Intergenic -107383 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 597.333-4 chr20 31612918 31613421 + 4.5 NA Intergenic Intergenic 5983 NR_036161 100422904 NR_036161 ENSG00000264395 MIR3193 - microRNA 3193 ncRNA 975.833-2 chr6 70108475 70108875 + 4.5 NA intron (NM_001858, intron 16 of 50) intron (NM_001858, intron 16 of 50) 174522 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 846.166 chr13 48769042 48769585 + 4.5 NA Intergenic Intergenic 115384 NM_001308468 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 923.666 chr2 20661330 20661957 + 4.5 NA Intergenic Intergenic -5501 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 773.5-2 chr9 33264792 33265224 + 4.5 NA promoter-TSS (NM_001172415) promoter-TSS (NM_001172415) -41 NM_016410 51510 Hs.635313 NM_016410 ENSG00000086065 CHMP5 C9orf83|CGI-34|HSPC177|PNAS-2|SNF7DC2|Vps60 charged multivesicular body protein 5 protein-coding 1348.5 chr17 49394719 49395507 + 4.5 NA Intergenic Intergenic 19745 NM_001281496 5245 Hs.514303 NM_002634 ENSG00000167085 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 1163.83-3 chr14 33849123 33849804 + 4.5 NA Intergenic Intergenic 101611 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 1444.67 chr12 53675950 53676675 + 4.5 NA promoter-TSS (NM_001369757) promoter-TSS (NM_001369757) 18 NM_001369755 517 Hs.524464 NM_005176 ENSG00000135390 ATP5MC2 ATP5A|ATP5G2 ATP synthase membrane subunit c locus 2 protein-coding 1013.17-2 chr4 47564152 47564818 + 4.5 NA intron (NM_020453, intron 15 of 22) intron (NM_020453, intron 15 of 22) 79210 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 1084.83 chr20 59571489 59571963 + 4.5 NA Intergenic Intergenic -5783 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 605.666 chr17 29219397 29219797 + 4.5 NA Intergenic Intergenic -27260 NM_005208 1411 Hs.46275 NM_005208 ENSG00000108255 CRYBA1 CRYB1|CTRCT10 crystallin beta A1 protein-coding 1372 chr1 204791305 204792356 + 4.5 NA Intergenic Intergenic -36822 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 1109 chr12 57078755 57079116 + 4.5 NA promoter-TSS (NM_015257) promoter-TSS (NM_015257) -144 NM_015257 23306 Hs.591040 NM_015257 ENSG00000166881 NEMP1 TMEM194|TMEM194A nuclear envelope integral membrane protein 1 protein-coding 1463.83 chr18 2541714 2542465 + 4.5 NA intron (NM_001308401, intron 7 of 7) intron (NM_001308401, intron 7 of 7) 29416 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 955.167-2 chr3 194333689 194334417 + 4.5 NA Intergenic CpG 17275 NM_001080513 1370 Hs.528368 NM_001309 ENSG00000178772 CPN2 ACBP carboxypeptidase N subunit 2 protein-coding 990.5-2 chr18 61581790 61582254 + 4.5 NA Intergenic Intergenic -166154 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 704.834-2 chr12 66107163 66107840 + 4.5 NA Intergenic Intergenic 23249 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 1780 chr15 67863139 67864153 + 4.5 NA Intergenic CpG -23601 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 1280.17-2 chr9 19925831 19926750 + 4.5 NA Intergenic Intergenic -139271 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 988.834-2 chr7 93055568 93056080 + 4.5 NA Intergenic Intergenic 62155 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 1319.5 chr12 7933021 7933526 + 4.5 NA intron (NM_006931, intron 2 of 9) intron (NM_006931, intron 2 of 9) 2914 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 922.833 chr17 44141699 44142384 + 4.5 NA 5' UTR (NM_001321310, exon 1 of 7) 5' UTR (NM_001321310, exon 1 of 7) 111 NM_001171251 78995 Hs.437059 NM_024032 ENSG00000125319 C17orf53 - chromosome 17 open reading frame 53 protein-coding 934.834 chr10 69392137 69393241 + 4.5 NA intron (NM_033496, intron 15 of 17) intron (NM_033496, intron 15 of 17) 24229 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 718.5-4 chr4 140523888 140524204 + 4.5 NA promoter-TSS (NM_153702) promoter-TSS (NM_153702) -122 NM_153702 255520 Hs.450105 NM_153702 ENSG00000179387 ELMOD2 9830169G11Rik ELMO domain containing 2 protein-coding 903-2 chr3 64575453 64575899 + 4.5 NA intron (NM_001318781, intron 27 of 38) MIRb|SINE|MIR 14330 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 1061.83 chr14 54805665 54806329 + 4.5 NA Intergenic Intergenic 51164 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 1421.67 chr8 102814744 102815207 + 4.5 NA Intergenic Intergenic 8153 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 996.833-3 chr7 27160714 27161408 + 4.5 NA Intergenic CpG -4386 NM_006896 3204 Hs.660918 NM_006896 ENSG00000122592 HOXA7 ANTP|HOX1|HOX1.1|HOX1A homeobox A7 protein-coding 1179.67 chr6 42726349 42727104 + 4.5 NA promoter-TSS (NR_037141) promoter-TSS (NR_037141) -850 NR_037141 442211 Hs.563394 NR_037141 ATP6V0CP3 - ATPase H+ transporting V0 subunit c pseudogene 3 pseudo 1197.5 chr10 59434765 59435282 + 4.5 NA Intergenic Intergenic -71842 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 1140.33 chr1 111714642 111715423 + 4.5 NA 3' UTR (NM_001010935, exon 9 of 9) 3' UTR (NM_001010935, exon 9 of 9) 24363 NM_019099 55924 Hs.193406 NM_019099 ENSG00000197852 INKA2 C1orf183|FAM212B inka box actin regulator 2 protein-coding 1012.67 chr12 13233976 13234684 + 4.5 NA Intergenic Intergenic 37604 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 936.333 chr15 69475457 69476212 + 4.5 NA Intergenic Intergenic 23016 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 1414 chr10 115706070 115706888 + 4.5 NA intron (NM_207303, intron 26 of 28) MLT1D|LTR|ERVL-MaLR 488310 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 1857.67 chr2 176653625 176654309 + 4.5 NA intron (NR_110599, intron 2 of 3) intron (NR_110599, intron 2 of 3) 16213 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 1181.17-2 chr6 62775235 62775894 + 4.5 NA Intergenic Intergenic -489337 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 999.834 chr3 99753313 99753795 + 4.5 NA intron (NM_001850, intron 3 of 4) intron (NM_001850, intron 3 of 4) -64308 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 1367.33 chr11 94504633 94505326 + 4.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -7482 NM_001190462 643037 NM_001190462 ENSG00000257057 C11orf97 LINC01171 chromosome 11 open reading frame 97 protein-coding 1721.17 chr2 46461375 46462144 + 4.5 NA Intergenic L2b|LINE|L2 -17806 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000284701 TMEM247 - transmembrane protein 247 protein-coding 1085.83 chr9 130684005 130684504 + 4.5 NA Intergenic Intergenic -9506 NM_001282708 23404 Hs.654643 NM_014285 ENSG00000130713 EXOSC2 RRP4|Rrp4p|SHRF|hRrp4p|p7 exosome component 2 protein-coding 679.667-2 chr17 67374553 67375124 + 4.5 NA Intergenic Intergenic -2443 NM_012417 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein cytoplasmic 1 protein-coding 968.333 chr4 157978569 157979208 + 4.5 NA Intergenic Intergenic -191864 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 357.333-3 chr1 182595778 182596184 + 4.5 NA Intergenic Intergenic -6725 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 1167.67 chr5 129771469 129771985 + 4.5 NA Intergenic Intergenic 23633 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 469.834 chr15 81939768 81940128 + 4.5 NA Intergenic Intergenic 106070 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 1291.5-3 chr15 41603995 41604574 + 4.5 NA Intergenic Intergenic 44312 NM_001330264 7301 Hs.381282 NM_006293 ENSG00000092445 TYRO3 BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif TYRO3 protein tyrosine kinase protein-coding 657.333 chr14 67836593 67837284 + 4.5 NA intron (NM_133509, intron 4 of 10) intron (NM_133509, intron 4 of 10) 13346 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 1267.33-2 chr22 38868804 38869360 + 4.5 NA intron (NM_014292, intron 4 of 4) intron (NM_014292, intron 4 of 4) 3134 NM_001303494 23466 Hs.592201 NM_014292 ENSG00000183741 CBX6 - chromobox 6 protein-coding 1772.67 chr6 129597829 129598986 + 4.5 NA intron (NM_033515, intron 12 of 14) intron (NM_033515, intron 12 of 14) 111770 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 1748.83 chr1 110829887 110830576 + 4.5 NA Intergenic Intergenic -40968 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 1179 chr11 72793609 72794113 + 4.5 NA promoter-TSS (NM_006645) promoter-TSS (NM_006645) -156 NM_006645 10809 Hs.188606 NM_006645 ENSG00000214530 STARD10 CGI-52|NY-CO-28|PCTP2|SDCCAG28 StAR related lipid transfer domain containing 10 protein-coding 1477.83 chr2 78979590 78980414 + 4.5 NA Intergenic Intergenic -45700 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 1460.67-2 chr12 62192549 62193298 + 4.5 NA promoter-TSS (NM_178539) promoter-TSS (NM_178539) -84 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 1396 chr11 112218916 112220270 + 4.5 NA TTS (NM_001256400) TTS (NM_001256400) -6835 NM_000317 5805 Hs.503860 NM_000317 ENSG00000150787 PTS PTPS 6-pyruvoyltetrahydropterin synthase protein-coding 581.5 chr1 212995427 212995932 + 4.5 NA intron (NM_144567, intron 8 of 8) intron (NM_144567, intron 8 of 8) 19830 NM_001300755 90806 Hs.157078 NM_144567 ENSG00000174606 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 protein-coding 1070.33-2 chr14 55089497 55090042 + 4.5 NA Intergenic Intergenic 38122 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 1055.83-4 chr8 24244773 24245317 + 4.5 NA Intergenic Intergenic -48995 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 1291.5-2 chr13 79423537 79424424 + 4.5 NA non-coding (NR_038991, exon 7 of 7) non-coding (NR_038991, exon 7 of 7) 17671 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 583.167-3 chr4 16001454 16001866 + 4.5 NA intron (NM_001371408, intron 12 of 24) L2|LINE|L2 -38485 NM_031950 83888 Hs.98785 NM_031950 ENSG00000137441 FGFBP2 HBP17RP|KSP37 fibroblast growth factor binding protein 2 protein-coding 688.5-2 chr2 109546163 109546533 + 4.5 NA intron (NM_001321508, intron 5 of 5) intron (NM_001321508, intron 5 of 5) 67319 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 1369-3 chr2 27753832 27754533 + 4.5 NA Intergenic MER5A|DNA|hAT-Charlie -17535 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 1062 chr17 34199643 34200412 + 4.5 NA Intergenic Intergenic -16395 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 1685.5 chr2 163155037 163155770 + 4.5 NA Intergenic Intergenic -316636 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 1543.33 chr20 46405947 46407284 + 4.5 NA promoter-TSS (NM_001318253) promoter-TSS (NM_001318253) 0 NM_001318253 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 1478.5 chr1 31964022 31964556 + 4.5 NA Intergenic Intergenic -25921 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 1071.33 chr6 135451569 135452025 + 4.5 NA intron (NM_017651, intron 10 of 27) intron (NM_017651, intron 10 of 27) 45943 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 1891.67 chr6 52049238 52049979 + 4.5 NA intron (NM_138694, intron 22 of 66) intron (NM_138694, intron 22 of 66) 38005 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 1437.33-2 chr1 44318076 44318757 + 4.5 NA intron (NM_001301698, intron 3 of 7) intron (NM_001301698, intron 3 of 7) 36841 NM_001301698 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 801-3 chr9 71818930 71819389 + 4.5 NA Intergenic Intergenic -50646 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 1420.33 chr5 40688278 40689036 + 4.5 NA intron (NM_000958, intron 2 of 2) MIR3|SINE|MIR 8742 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 823-3 chr6 10801300 10801805 + 4.5 NA intron (NR_134935, intron 8 of 14) intron (NR_134935, intron 8 of 14) 29325 NM_005906 4117 Hs.446125 NM_005906 ENSG00000111837 MAK RP62 male germ cell associated kinase protein-coding 1277.83-2 chr21 36927266 36928100 + 4.5 NA intron (NM_001352515, intron 5 of 10) intron (NM_001352515, intron 5 of 10) 34675 NM_001352518 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 1861.17 chr8 23472194 23472921 + 4.5 NA Intergenic Intergenic -14826 NM_001128930 9583 Hs.444389 NM_004901 ENSG00000197217 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 728.334 chr17 43766408 43766814 + 4.5 NA 3' UTR (NM_004090, exon 3 of 3) 3' UTR (NM_004090, exon 3 of 3) -7820 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 805.833 chr7 126802830 126803697 + 4.5 NA intron (NM_001371085, intron 6 of 10) intron (NM_001371085, intron 6 of 10) 254921 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 1129.33 chr1 246450696 246451229 + 4.5 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -33550 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 1143.33 chr1 17661513 17661999 + 4.5 NA intron (NR_137287, intron 26 of 29) intron (NR_137287, intron 26 of 29) 43443 NM_001319838 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 863.333 chr3 52001468 52001760 + 4.5 NA Intergenic Intergenic -5719 NM_000992 6159 Hs.425125 NM_000992 ENSG00000162244 RPL29 HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370 ribosomal protein L29 protein-coding 1085.5-3 chr6 15623502 15623944 + 4.5 NA intron (NR_036448, intron 6 of 9) intron (NR_036448, intron 6 of 9) 39305 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 1250.17-2 chr4 74376194 74377135 + 4.5 NA intron (NM_001432, intron 1 of 4) intron (NM_001432, intron 1 of 4) 11519 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 1460.33-2 chr2 7426750 7427704 + 4.5 NA intron (NR_038432, intron 2 of 5) intron (NR_038432, intron 2 of 5) 5966 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 573.667 chr20 5205146 5205796 + 4.5 NA Intergenic Intergenic 78463 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 1124.83 chr8 117040861 117041726 + 4.5 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) 90318 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 807.667-2 chr7 76178044 76178254 + 4.5 NA Intergenic Intergenic -23747 NM_001110199 222183 Hs.511025 NM_001039212 ENSG00000177679 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 526.5-2 chr8 30812685 30813145 + 4.5 NA promoter-TSS (NM_001009552) promoter-TSS (NM_001009552) -97 NM_001009552 5516 Hs.491440 NM_004156 ENSG00000104695 PPP2CB PP2Abeta|PP2CB protein phosphatase 2 catalytic subunit beta protein-coding 913.335 chr10 86960365 86960868 + 4.5 NA intron (NM_001330120, intron 5 of 6) intron (NM_001330120, intron 5 of 6) 2017 NM_003087 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 447.667-2 chr10 71896473 71896695 + 4.5 NA Intergenic Intergenic -45333 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 2475.5-2 chr14 22556368 22557819 + 4.5 NA promoter-TSS (NR_146543) promoter-TSS (NR_146543) -31 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 1769.83 chr1 159160601 159161846 + 4.5 NA Intergenic Intergenic -10392 NM_021189 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 1345 chr11 62081999 62082665 + 4.5 NA Intergenic Intergenic -41679 NM_020238 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 900.667 chr4 153083280 153084141 + 4.5 NA Intergenic Intergenic -68624 NM_001351056 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 1143.33-2 chr3 42839572 42840094 + 4.5 NA intron (NM_001296, intron 2 of 2) intron (NM_001296, intron 2 of 2) 30388 NM_001296 1238 Hs.146346 NM_001296 ENSG00000144648 ACKR2 CCBP2|CCR10|CCR9|CMKBR9|D6|hD6 atypical chemokine receptor 2 protein-coding 708.666-2 chr3 119820866 119821544 + 4.5 NA TTS (NM_001146156) TTS (NM_001146156) 38495 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 1038 chr20 45629084 45629747 + 4.5 NA promoter-TSS (NM_080753) promoter-TSS (NM_080753) -324 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 1446.83 chr2 78992358 78992993 + 4.5 NA Intergenic Intergenic -33027 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 967.166 chr19 40602115 40602794 + 4.5 NA intron (NM_001042545, intron 1 of 29) intron (NM_001042545, intron 1 of 29) 1085 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 1134.17 chr2 17851663 17852141 + 4.5 NA Intergenic Intergenic -25945 NM_001282428 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 1343.83-2 chr8 81234981 81235858 + 4.5 NA Intergenic Intergenic -45117 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 1507.17 chr22 39170690 39171268 + 4.5 NA Intergenic Intergenic -18299 NM_175709 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 1489.17 chr5 82350366 82352376 + 4.5 NA Intergenic Intergenic 71909 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 2036.5 chr8 29314951 29315986 + 4.5 NA Intergenic Intergenic 33337 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 773.5 chr2 208466129 208466742 + 4.5 NA intron (NM_005048, intron 9 of 12) MamRTE1|LINE|RTE-BovB 59605 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 1316.83 chr1 165392478 165393523 + 4.5 NA Intergenic Intergenic 31984 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 988.333 chr15 51192596 51193484 + 4.5 NA intron (NR_146310, intron 1 of 2) intron (NR_146310, intron 1 of 2) -49150 NR_039863 100616369 NR_039863 ENSG00000266593 MIR4713 - microRNA 4713 ncRNA 752.167 chr15 94327275 94327524 + 4.5 NA intron (NM_018349, intron 3 of 21) intron (NM_018349, intron 3 of 21) -28531 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 1153.67 chr10 73643946 73644726 + 4.5 NA TTS (NM_024875) TTS (NM_024875) -2862 NM_021245 58529 Hs.238756 NM_021245 ENSG00000177791 MYOZ1 CS-2|FATZ|MYOZ myozenin 1 protein-coding 680.334 chr14 28635218 28635625 + 4.5 NA Intergenic Intergenic 129898 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 630-3 chr5 20210399 20210698 + 4.5 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -95003 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 1199.67-2 chr14 24678826 24679403 + 4.5 NA Intergenic Intergenic -44924 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 1484.67 chr8 122678419 122679317 + 4.5 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 15238 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 885.166-3 chr7 19747723 19748179 + 4.5 NA intron (NM_001366627, intron 1 of 4) intron (NM_001366627, intron 1 of 4) 24830 NM_152774 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 1173 chr1 113677659 113678518 + 4.5 NA intron (NM_001142782, intron 19 of 20) intron (NM_001142782, intron 19 of 20) 81067 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 718.5 chr17 74493363 74493752 + 4.5 NA Intergenic Intergenic 26923 NM_001330457 11314 Hs.9688 NM_007261 ENSG00000167851 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 981.333 chr17 67387090 67387370 + 4.5 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) 9949 NM_181671 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein cytoplasmic 1 protein-coding 972.167-2 chr18 3297615 3298086 + 4.5 NA Intergenic L1PB3|LINE|L1 35131 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 1180.33 chr1 209692855 209693511 + 4.5 NA intron (NM_181755, intron 1 of 6) intron (NM_181755, intron 1 of 6) 7003 NM_001206741 3290 Hs.195040 NM_005525 ENSG00000117594 HSD11B1 11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1 hydroxysteroid 11-beta dehydrogenase 1 protein-coding 1104.33 chr3 30693691 30694132 + 4.5 NA 3' UTR (NM_003242, exon 7 of 7) 3' UTR (NM_003242, exon 7 of 7) 87310 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 889.833-2 chr19 10568940 10569415 + 4.5 NA promoter-TSS (NM_079421) promoter-TSS (NM_079421) -198 NM_001800 1032 Hs.435051 NM_001800 ENSG00000129355 CDKN2D INK4D|p19|p19-INK4D cyclin dependent kinase inhibitor 2D protein-coding 1076.5 chr4 74134203 74134709 + 4.5 NA intron (NM_001351311, intron 2 of 7) L1MA4|LINE|L1 11183 NM_001351310 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 2635.83 chr17 49569139 49570248 + 4.5 NA intron (NR_103773, intron 1 of 2) intron (NR_103773, intron 1 of 2) 4371 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 1612.5 chr2 153519257 153520420 + 4.5 NA Intergenic Intergenic -41076 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 1080.67-3 chr9 112361503 112362147 + 4.5 NA Intergenic L1M4c|LINE|L1 -18084 NM_001195822 84263 Hs.59486 NM_032303 ENSG00000119471 HSDL2 C9orf99|SDR13C1 hydroxysteroid dehydrogenase like 2 protein-coding 1230.83-3 chr3 146189406 146190171 + 4.5 NA Intergenic Intergenic -28293 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 1206.33-2 chr17 59004662 59005476 + 4.5 NA intron (NR_148346, intron 22 of 23) intron (NR_148346, intron 22 of 23) 101811 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 1145.83-2 chr14 59055232 59055877 + 4.5 NA Intergenic Intergenic -133113 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 1306.83 chr19 28325219 28326114 + 4.5 NA Intergenic Intergenic -281022 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 1678.83 chr2 174699820 174700523 + 4.5 NA Intergenic Intergenic -17272 NM_001077269 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 1574.5 chr3 167882086 167882673 + 4.5 NA Intergenic Intergenic -13569 NR_033843 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 904.667 chr17 3737428 3738136 + 4.5 NA intron (NM_002208, intron 20 of 30) Charlie4z|DNA|hAT-Charlie 13879 NM_031965 83903 Hs.534059 NM_031965 ENSG00000177602 HASPIN GSG2 histone H3 associated protein kinase protein-coding 1083.83 chr15 73240658 73241479 + 4.5 NA intron (NM_002499, intron 8 of 28) intron (NM_002499, intron 8 of 28) -58842 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 1483.83 chr1 147892655 147893457 + 4.5 NA Intergenic Intergenic -9739 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 1995.33 chr11 36510037 36510757 + 4.5 NA promoter-TSS (NM_004620) promoter-TSS (NM_004620) -125 NM_004620 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 1399.5 chr1 215710194 215711156 + 4.5 NA intron (NM_206933, intron 61 of 71) intron (NM_206933, intron 61 of 71) 143371 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 1298.5 chr1 234065546 234066276 + 4.5 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -148300 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 354.667-12 chr4 109978008 109978354 + 4.5 NA intron (NM_001357021, intron 12 of 19) L1MA8|LINE|L1 65298 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 1020.17 chr2 133844509 133844917 + 4.5 NA Intergenic MIR|SINE|MIR -275222 NM_001371457 1074.83-2 chr2 10072360 10072816 + 4.5 NA intron (NM_001037160, intron 1 of 2) intron (NM_001037160, intron 1 of 2) 7823 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 1594.33 chr7 7102734 7104015 + 4.5 NA Intergenic Intergenic -6588 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 1279.83-3 chr5 167722903 167723712 + 4.5 NA intron (NM_001368145, intron 1 of 26) L2b|LINE|L2 -31622 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 1804.83 chr11 28697695 28698675 + 4.5 NA Intergenic Intergenic -220637 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 875-3 chr3 98994294 98994809 + 4.5 NA Intergenic Intergenic -92856 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 1099.67-2 chr3 56988871 56989447 + 4.5 NA intron (NM_001128615, intron 2 of 12) intron (NM_001128615, intron 2 of 12) 49119 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 1364.5 chr8 132193693 132194485 + 4.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -88824 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 870-2 chr3 58640263 58641024 + 4.5 NA intron (NM_138805, intron 6 of 9) intron (NM_138805, intron 6 of 9) -13033 NM_001282714 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 1355.33 chr19 43519195 43520029 + 4.5 NA intron (NM_001320869, intron 1 of 4) intron (NM_001320869, intron 1 of 4) 7589 NM_001320869 23474 Hs.7486 NM_014297 ENSG00000105755 ETHE1 HSCO|YF13H12 ETHE1 persulfide dioxygenase protein-coding 1043.67-2 chr17 78708397 78708962 + 4.5 NA 5' UTR (NM_001365038, exon 3 of 14) 5' UTR (NM_001365038, exon 3 of 14) 8353 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 1264.17 chr9 76810291 76810846 + 4.5 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) 46132 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 1704.5 chr17 50026215 50027721 + 4.5 NA Intergenic Intergenic 28771 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 PICART1 - p53 inducible cancer associated RNA transcript 1 ncRNA 1087-2 chr2 121402165 121402921 + 4.5 NA intron (NM_015282, intron 26 of 38) intron (NM_015282, intron 26 of 38) -117341 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 1083 chr1 174726387 174726897 + 4.5 NA intron (NM_001366451, intron 2 of 12) intron (NM_001366451, intron 2 of 12) 25647 NM_001366452 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 1331.33 chr3 189961101 189961989 + 4.5 NA intron (NM_018192, intron 14 of 14) intron (NM_018192, intron 14 of 14) 131623 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 809.833 chr18 70086769 70087175 + 4.5 NA intron (NM_001318520, intron 30 of 47) intron (NM_001318520, intron 30 of 47) 118715 NM_173630 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 922.833-2 chr5 52948121 52948726 + 4.5 NA intron (NM_181501, intron 28 of 28) intron (NM_181501, intron 28 of 28) -40929 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 1081.67 chr3 32175589 32176073 + 4.5 NA Intergenic Intergenic -62848 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 1318.17 chr2 155377066 155377992 + 4.5 NA Intergenic Intergenic 678834 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 2551.67 chr11 65013420 65014836 + 4.5 NA promoter-TSS (NR_037650) promoter-TSS (NR_037650) 15 NR_037650 100528018 Hs.80132 NR_037650 ENSG00000273003 ARL2-SNX15 - ARL2-SNX15 readthrough (NMD candidate) ncRNA 1090.5-2 chr9 135602625 135603079 + 4.5 NA Intergenic L1M5|LINE|L1 27927 NR_109814 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 1183 chr1 44595024 44595715 + 4.5 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 49876 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 1198 chr8 75581952 75582464 + 4.5 NA Intergenic L1MC1|LINE|L1 42240 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 1221.83 chr20 6765341 6766151 + 4.5 NA Intergenic Intergenic -1940 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 669.834 chr4 33089652 33090230 + 4.5 NA Intergenic MIR|SINE|MIR 738903 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 389-12 chr5 138575681 138575802 + 4.5 NA promoter-TSS (NM_004134) promoter-TSS (NM_004134) -340 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 513-3 chr2 60998876 60999334 + 4.5 NA intron (NM_144709, intron 4 of 17) intron (NM_144709, intron 4 of 17) 18107 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 1656.67 chr16 75464395 75465149 + 4.5 NA promoter-TSS (NM_145254) promoter-TSS (NM_145254) -35 NM_001304998 124491 Hs.487510 NM_145254 ENSG00000166822 TMEM170A TMEM170 transmembrane protein 170A protein-coding 1408.67-3 chr5 147188660 147189605 + 4.5 NA intron (NR_147190, intron 2 of 3) intron (NR_147190, intron 2 of 3) 45727 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 1373.33 chr14 75307694 75308254 + 4.5 NA Intergenic Intergenic 13570 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 995 chr14 101628664 101629210 + 4.5 NA Intergenic MIRb|SINE|MIR 67586 NM_001362 1735 Hs.49322 NM_001362 ENSG00000197406 DIO3 5DIII|D3|DIOIII|TXDI3 iodothyronine deiodinase 3 protein-coding 896.5-2 chr6 50264895 50265422 + 4.5 NA Intergenic Intergenic -215229 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 696.667-3 chr6 52995006 52995530 + 4.5 NA promoter-TSS (NM_001512) promoter-TSS (NM_001512) 16 NM_001512 2941 Hs.485557 NM_001512 ENSG00000170899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 967.5 chr3 82163863 82164401 + 4.5 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 177990 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 1827.5 chr5 94967958 94969263 + 4.5 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 113256 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 2050.83 chr8 139630648 139631806 + 4.5 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 71896 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 529 chr15 80475991 80476153 + 4.5 NA intron (NM_014862, intron 5 of 18) Tigger9b|DNA|TcMar-Tigger 71690 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 1332.33 chr1 62841329 62842169 + 4.5 NA intron (NM_178221, intron 10 of 10) intron (NM_178221, intron 10 of 10) 57617 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 692.167-3 chr7 29106301 29106811 + 4.5 NA intron (NM_001371268, intron 3 of 9) LTR41B|LTR|ERVL -18477 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 880.001 chr2 80238868 80239304 + 4.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 65666 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 1322.67 chr20 50185778 50186832 + 4.5 NA non-coding (NR_125739, exon 7 of 7) non-coding (NR_125739, exon 7 of 7) -4278 NM_001285878 1051 Hs.517106 NM_005194 ENSG00000172216 CEBPB C/EBP-beta|IL6DBP|NF-IL6|TCF5 CCAAT enhancer binding protein beta protein-coding 1216.33 chr14 31509958 31510663 + 4.5 NA Intergenic Intergenic -22271 NM_001197184 2856 Hs.727479 NM_001197184 ENSG00000214943 GPR33 - G protein-coupled receptor 33 (gene/pseudogene) protein-coding 803.167 chr6 134822684 134823682 + 4.5 NA Intergenic Intergenic 126918 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 1114.17 chr3 166012793 166013333 + 4.5 NA Intergenic Intergenic -175640 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 899.167-2 chr6 159654438 159654960 + 4.5 NA Intergenic Intergenic 38542 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 913.5 chr2 190781579 190782170 + 4.33333 NA Intergenic L1MC4|LINE|L1 -98947 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 1267.83-2 chr7 122219070 122219694 + 4.33333 NA Intergenic Intergenic -75133 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 1102.5-2 chr2 152740678 152741265 + 4.33333 NA intron (NR_146431, intron 3 of 3) intron (NR_146431, intron 3 of 3) 22334 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 1616.67-2 chr3 63818422 63818970 + 4.33333 NA promoter-TSS (NM_001355236) promoter-TSS (NM_001355236) -603 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 1637-3 chr4 70687627 70688710 + 4.33333 NA promoter-TSS (NM_020368) promoter-TSS (NM_020368) -364 NM_020368 57050 Hs.322901 NM_020368 ENSG00000132467 UTP3 CRL1|CRLZ1|SAS10 UTP3 small subunit processome component protein-coding 1305.83 chr2 84925568 84926238 + 4.33333 NA Intergenic Intergenic 20247 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 1718.83 chr4 168076980 168077719 + 4.33333 NA Intergenic Intergenic -15188 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 1423.83 chr12 7109092 7109894 + 4.33333 NA promoter-TSS (NM_016546) promoter-TSS (NM_016546) -279 NM_001297643 51279 Hs.631730 NM_016546 ENSG00000139178 C1RL C1RL1|C1RLP|C1r-LP|CLSPa complement C1r subcomponent like protein-coding 1185.67-2 chr15 48861426 48862244 + 4.33333 NA intron (NM_203349, intron 6 of 11) intron (NM_203349, intron 6 of 11) -16299 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 852.167 chr1 23868152 23868915 + 4.33333 NA promoter-TSS (NM_000147) promoter-TSS (NM_000147) -164 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 1216 chr1 100868183 100868788 + 4.33333 NA Intergenic Intergenic 26357 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 1582.5 chr1 29202883 29204002 + 4.33333 NA intron (NM_001349715, intron 5 of 10) intron (NM_001349715, intron 5 of 10) -21542 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 1076 chr2 177332484 177332991 + 4.33333 NA intron (NR_026966, intron 3 of 8) intron (NR_026966, intron 3 of 8) -18855 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 1203.83 chr1 183655159 183655724 + 4.33333 NA intron (NM_001297670, intron 1 of 17) intron (NM_001297670, intron 1 of 17) -2125 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 832.667 chr7 18666254 18666710 + 4.33333 NA exon (NM_001204148, exon 11 of 11) exon (NM_001204148, exon 11 of 11) 157212 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 886.834 chr6 41846638 41847326 + 4.33333 NA intron (NM_001286554, intron 1 of 5) L1MB2|LINE|L1 24655 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 1563.5 chr4 76067316 76068239 + 4.33333 NA intron (NM_001130017, intron 1 of 9) MamGypLTR2c|LTR|Gypsy -6918 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 579.667 chr5 39376161 39376664 + 4.33333 NA intron (NM_001343, intron 12 of 14) intron (NM_001343, intron 12 of 14) -11917 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 475.167-2 chr3 133663845 133664157 + 4.33333 NA intron (NM_001354703, intron 1 of 22) intron (NM_001354703, intron 1 of 22) 2003 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 1706.33 chr5 10863571 10864538 + 4.33333 NA Intergenic Intergenic -102820 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 1770.67 chr10 69092922 69093920 + 4.33333 NA intron (NM_001321054, intron 1 of 1) MER33|DNA|hAT-Charlie 5318 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 994.5-3 chr14 88491566 88492417 + 4.33333 NA intron (NM_007039, intron 10 of 18) intron (NM_007039, intron 10 of 18) 63016 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 1275.17 chr10 20858067 20858520 + 4.33333 NA exon (NM_006393, exon 9 of 28) exon (NM_006393, exon 9 of 28) 39309 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 1118.83-2 chr2 165014843 165015538 + 4.33333 NA Intergenic Intergenic -59665 NM_001351540 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 1291.33 chr3 124564790 124565605 + 4.33333 NA intron (NM_001024660, intron 34 of 59) intron (NM_001024660, intron 34 of 59) -19461 NM_001322995 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 706.5 chr7 78587438 78587674 + 4.33333 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 240314 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 1079-2 chr12 120439101 120439822 + 4.33333 NA intron (NM_004373, intron 2 of 2) AluSq2|SINE|Alu 1348 NM_004373 1337 Hs.369624 NM_004373 ENSG00000111775 COX6A1 CMTRID|COX6A|COX6AL cytochrome c oxidase subunit 6A1 protein-coding 984.166-2 chr9 9606470 9606951 + 4.33333 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -192682 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 630.833-3 chr12 106920046 106920354 + 4.33333 NA Intergenic Intergenic -35522 NM_001319661 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 1152.83 chr5 83711796 83712482 + 4.33333 NA intron (NM_001884, intron 1 of 4) intron (NM_001884, intron 1 of 4) 8716 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 1386.17 chr4 48086940 48087751 + 4.33333 NA intron (NM_003328, intron 9 of 14) intron (NM_003328, intron 9 of 14) 46905 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 891.333-2 chr14 32710779 32711282 + 4.33333 NA intron (NM_004274, intron 9 of 13) MER58A|DNA|hAT-Charlie -227849 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 2171.83 chr2 185738415 185739729 + 4.33333 NA promoter-TSS (NR_110215) promoter-TSS (NR_110215) 21 NR_110214 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 1516.5 chr1 44674190 44674897 + 4.33333 NA promoter-TSS (NM_001300746) promoter-TSS (NM_001300746) -62 NM_024587 79639 Hs.22157 NM_024587 ENSG00000126106 TMEM53 NET4 transmembrane protein 53 protein-coding 1246.83 chr12 39273174 39273760 + 4.33333 NA Intergenic Intergenic 169653 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 1383.5 chr15 98659390 98659823 + 4.33333 NA intron (NM_000875, intron 1 of 20) intron (NM_000875, intron 1 of 20) -8385 NR_126453 104472848 Hs.349049 NR_126453 IRAIN IGF1R-AS IGF1R antisense imprinted non-protein coding RNA ncRNA 1291.67-2 chr3 98329500 98330158 + 4.33333 NA Intergenic L1P4a|LINE|L1 -24025 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 1095.17-3 chr8 22137359 22137953 + 4.33333 NA TTS (NM_001316965) TTS (NM_001316965) 4251 NM_001316964 80346 Hs.289063 NM_025232 ENSG00000168476 REEP4 C8orf20|PP432|Yip2c receptor accessory protein 4 protein-coding 779.167 chr10 92516967 92517609 + 4.33333 NA intron (NR_136399, intron 4 of 25) intron (NR_136399, intron 4 of 25) -19527 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 757.5-2 chr3 195914848 195915466 + 4.33333 NA Intergenic Intergenic -6148 NM_005781 10188 Hs.518513 NM_005781 ENSG00000061938 TNK2 ACK|ACK-1|ACK1|p21cdc42Hs tyrosine kinase non receptor 2 protein-coding 1209.5 chr10 9331338 9331973 + 4.33333 NA Intergenic Intergenic -36062 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 1330.17 chr20 23995953 23997050 + 4.33333 NA Intergenic Intergenic -7722 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 1337.33-2 chr4 86498169 86499175 + 4.33333 NA Intergenic Intergenic 43880 NR_039657 100616463 NR_039657 ENSG00000266515 MIR4452 - microRNA 4452 ncRNA 1674-2 chr6 55241013 55241847 + 4.33333 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) -86039 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 1142.67 chr5 36728737 36729185 + 4.33333 NA Intergenic Intergenic 122355 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 959.667-2 chr6 18323927 18324405 + 4.33333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -59636 NM_001134709 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 1191.17 chr2 150610638 150611563 + 4.33333 NA Intergenic Intergenic -17797 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 2132 chr2 162300474 162301756 + 4.33333 NA intron (NM_022168, intron 3 of 15) intron (NM_022168, intron 3 of 15) 17569 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 1507.33-2 chr3 159259238 159260561 + 4.33333 NA intron (NM_001197113, intron 3 of 10) intron (NM_001197113, intron 3 of 10) -13348 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 931.5 chr11 119533967 119534299 + 4.33333 NA Intergenic Intergenic -109148 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 964.667 chr1 172399490 172400067 + 4.33333 NA intron (NM_001350206, intron 20 of 20) intron (NM_001350206, intron 20 of 20) -20907 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 970.834 chr1 109196954 109197649 + 4.33333 NA intron (NM_001284352, intron 14 of 20) AluJo|SINE|Alu 10752 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 580.167-2 chr14 36557061 36557268 + 4.33333 NA Intergenic Intergenic 25450 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 932.501 chr15 58770712 58771614 + 4.33333 NA promoter-TSS (NR_135474) promoter-TSS (NR_135474) -139 NM_001040450 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 2609.5 chr14 49861641 49863205 + 4.33333 NA TTS (NR_027260) TTS (NR_027260) 426 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 682.667 chr14 21456092 21456438 + 4.33333 NA promoter-TSS (NM_001170629) promoter-TSS (NM_001170629) -142 NM_001170629 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 711.333-2 chr15 86624702 86625300 + 4.33333 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -307879 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 1700.33 chr2 102449332 102450199 + 4.33333 NA intron (NM_003853, intron 10 of 11) intron (NM_003853, intron 10 of 11) 17476 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 791.499 chr1 203216320 203216663 + 4.33333 NA non-coding (NR_045785, exon 12 of 12) non-coding (NR_045785, exon 12 of 12) 13182 NM_001256125 1118 Hs.201688 NM_003465 ENSG00000133063 CHIT1 CHI3|CHIT|CHITD chitinase 1 protein-coding 1058.83-2 chr5 111550491 111551358 + 4.33333 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -38327 NM_001308056 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 1641 chr10 120336901 120337483 + 4.33333 NA Intergenic L1ME3E|LINE|L1 18031 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 899.167 chr6 37691956 37692617 + 4.33333 NA intron (NM_153487, intron 1 of 16) intron (NM_153487, intron 1 of 16) 5597 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 943.999 chr11 82718137 82718447 + 4.33333 NA Intergenic Intergenic 15572 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 1594.17 chr1 231211458 231212012 + 4.33333 NA intron (NM_001300889, intron 10 of 11) intron (NM_001300889, intron 10 of 11) -24108 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 890.334 chr11 61947555 61948079 + 4.33333 NA Intergenic Intergenic -2004 NM_001363592 7439 Hs.524910 NM_004183 ENSG00000167995 BEST1 ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2 bestrophin 1 protein-coding 1585.5 chr4 169810234 169810990 + 4.33333 NA Intergenic Intergenic -52668 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 926.834 chr1 212749724 212750286 + 4.33333 NA intron (NM_015471, intron 4 of 5) MER20B|DNA|hAT-Charlie 41772 NM_001042549 25936 Hs.497692 NM_015471 ENSG00000117697 NSL1 C1orf48|DC8|MIS14 NSL1 component of MIS12 kinetochore complex protein-coding 695.833 chr6 3061570 3061919 + 4.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -2223 NM_001354932 8737 Hs.519842 NM_003804 ENSG00000137275 RIPK1 IMD57|RIP|RIP-1|RIP1 receptor interacting serine/threonine kinase 1 protein-coding 2081.5 chr10 95445215 95446457 + 4.33333 NA intron (NM_001290295, intron 2 of 24) intron (NM_001290295, intron 2 of 24) -4656 NM_001290297 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 1193.17-2 chr8 52014124 52014882 + 4.33333 NA Intergenic MER90a|LTR|ERV1 -115317 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 1005.5 chr3 132642238 132642785 + 4.33333 NA intron (NM_032169, intron 3 of 19) intron (NM_032169, intron 3 of 19) -11935 NM_198329 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 1921.83 chr19 28709957 28710910 + 4.33333 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 17261 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 874.333 chr11 97140891 97141743 + 4.33333 NA Intergenic Intergenic 632892 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1333.83 chr10 86688226 86688887 + 4.33333 NA intron (NM_001368066, intron 6 of 14) intron (NM_001368066, intron 6 of 14) 19992 NM_001080116 11155 Hs.657271 NM_007078 ENSG00000122367 LDB3 CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP LIM domain binding 3 protein-coding 1050-3 chr2 44086953 44087392 + 4.33333 NA Intergenic CpG -81631 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 2231.83 chr6 137271144 137272555 + 4.33333 NA Intergenic Intergenic -52419 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 1240.17 chr18 11154404 11155346 + 4.33333 NA Intergenic Intergenic -6113 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 946.5-2 chr2 195318326 195318962 + 4.33333 NA Intergenic Intergenic -338314 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 986.334 chr14 86035856 86036331 + 4.33333 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 101415 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 2318.33 chr7 25894737 25895956 + 4.33333 NA Intergenic Intergenic 54640 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 847.834-2 chr9 109440621 109441130 + 4.33333 NA intron (NM_001145368, intron 7 of 24) L2b|LINE|L2 10509 NM_001145369 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase non-receptor type 3 protein-coding 1297.67 chr1 155017247 155018103 + 4.33333 NA TTS (NM_144622) TTS (NM_144622) 15045 NR_045515 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding 765.499 chrX 102067932 102068214 + 4.33333 NA Intergenic Intergenic -57606 NM_080390 140597 Hs.401835 NM_080390 ENSG00000184905 TCEAL2 MY0876G05|WEX1|my048 transcription elongation factor A like 2 protein-coding 802.833 chr2 163345778 163346151 + 4.33333 NA Intergenic Intergenic 390044 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 1392 chr15 51162837 51163326 + 4.33333 NA intron (NR_146310, intron 1 of 2) intron (NR_146310, intron 1 of 2) -57805 NM_207381 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 1606.67 chr12 41276294 41277508 + 4.33333 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 88581 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 1638.5-2 chr19 49676154 49677208 + 4.33333 NA promoter-TSS (NM_001207042) promoter-TSS (NM_001207042) -471 NM_001536 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 1477.83-2 chr3 133578331 133579278 + 4.33333 NA intron (NM_001282765, intron 2 of 4) intron (NM_001282765, intron 2 of 4) 4370 NM_001282763 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 1086.33 chr15 44066081 44066639 + 4.33333 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) 128086 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 1670.33 chr5 173581612 173582222 + 4.33333 NA TTS (NR_027109) TTS (NR_027109) 2283 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 1114 chr1 169809607 169810203 + 4.33333 NA intron (NM_001320047, intron 9 of 24) MLT1A0|LTR|ERVL-MaLR 14865 NM_001366771 55732 Hs.443551 NM_018186 ENSG00000000460 C1orf112 - chromosome 1 open reading frame 112 protein-coding 623-4 chr6 36027473 36027818 + 4.33333 NA promoter-TSS (NM_001315) promoter-TSS (NM_001315) -32 NM_139014 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 1149-2 chr8 111443961 111444661 + 4.33333 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 67672 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 1058.33 chr20 51594813 51595638 + 4.33333 NA Intergenic Intergenic -32386 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 727.501 chr16 84186949 84187668 + 4.33333 NA promoter-TSS (NM_001243159) promoter-TSS (NM_001243159) -238 NM_001243157 9013 Hs.153022 NM_005679 ENSG00000103168 TAF1C MGC:39976|SL1|TAFI110|TAFI95 TATA-box binding protein associated factor, RNA polymerase I subunit C protein-coding 1244.33 chr14 72292013 72293008 + 4.33333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -224310 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 988.166 chr10 43205076 43205434 + 4.33333 NA intron (NM_145313, intron 2 of 12) intron (NM_145313, intron 2 of 12) 24484 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 869.5 chr15 91271667 91272179 + 4.33333 NA intron (NM_001323036, intron 8 of 11) intron (NM_001323036, intron 8 of 11) 170127 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 1001-2 chr2 96536300 96536664 + 4.33333 NA promoter-TSS (NM_001319085) promoter-TSS (NM_001319085) -270 NM_001319085 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 1043.17 chr10 5441830 5442498 + 4.33333 NA intron (NM_001047160, intron 3 of 11) intron (NM_001047160, intron 3 of 11) -4387 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 1781.67 chr18 1585660 1586461 + 4.33333 NA Intergenic Intergenic -226431 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1221.5-2 chr8 118418814 118419668 + 4.33333 NA intron (NM_001349811, intron 3 of 4) MIRc|SINE|MIR -201760 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 859.666 chr21 35051375 35051823 + 4.33333 NA Intergenic Intergenic -2301 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 1299.5 chr1 187051472 187052026 + 4.33333 NA Intergenic Intergenic -41093 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 699.166 chr5 73596660 73597277 + 4.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR -29190 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 1090 chr15 89739757 89740446 + 4.33333 NA intron (NM_001284395, intron 16 of 16) MIR|SINE|MIR 11208 NM_018670 55897 Hs.447531 NM_018670 ENSG00000166823 MESP1 bHLHc5 mesoderm posterior bHLH transcription factor 1 protein-coding 398.666-2 chr5 138352400 138352550 + 4.33333 NA promoter-TSS (NM_016604) promoter-TSS (NM_016604) -210 NM_016604 51780 Hs.483486 NM_016604 ENSG00000120733 KDM3B 5qNCA|C5orf7|JMJD1B|NET22 lysine demethylase 3B protein-coding 476.5-2 chr19 34501528 34501986 + 4.33333 NA 3' UTR (NM_001080436, exon 8 of 8) 3' UTR (NM_001080436, exon 8 of 8) 19999 NM_001080436 126374 Hs.585010 NM_001080436 ENSG00000142279 WTIP - WT1 interacting protein protein-coding 720.667-2 chr2 113203604 113204179 + 4.33333 NA 3' UTR (NM_012455, exon 17 of 17) 3' UTR (NM_012455, exon 17 of 17) 29920 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 923.334-3 chr12 91361473 91362208 + 4.33333 NA Intergenic Intergenic -179023 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 1270 chr1 246497116 246497716 + 4.33333 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) 9863 NM_001167740 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 1088.33-2 chr12 49110530 49111057 + 4.33333 NA 5' UTR (NM_001300750, exon 1 of 18) 5' UTR (NM_001300750, exon 1 of 18) 107 NM_018113 55716 Hs.272838 NM_018113 ENSG00000139636 LMBR1L LIMR limb development membrane protein 1 like protein-coding 1378-2 chr5 174316710 174317919 + 4.33333 NA Intergenic Intergenic -19040 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 1166.67-3 chr3 40580300 40580794 + 4.33333 NA Intergenic Intergenic 55587 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 1193.17 chr12 24991375 24992191 + 4.33333 NA Intergenic Intergenic 5682 NM_001101339 196415 Hs.434453 NM_001101339 C12orf77 - chromosome 12 open reading frame 77 protein-coding 1777.5 chr8 38410780 38411927 + 4.33333 NA 3' UTR (NM_023110, exon 18 of 18) 3' UTR (NM_023110, exon 18 of 18) 24222 NM_001199660 137994 Hs.696457 NM_144652 ENSG00000165046 LETM2 SLC55A2 leucine zipper and EF-hand containing transmembrane protein 2 protein-coding 888.166 chr16 78503316 78503921 + 4.33333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 403964 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 1035.67 chr7 29589127 29589756 + 4.33333 NA Intergenic (T)n|Simple_repeat|Simple_repeat 23908 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 937.333-2 chr5 157761818 157762571 + 4.33333 NA Intergenic Intergenic 18482 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 1218.5-4 chrX 49919432 49920259 + 4.33333 NA Intergenic Intergenic -2751 NM_001272102 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 670.5 chr2 168136339 168136765 + 4.33333 NA intron (NM_013233, intron 8 of 17) intron (NM_013233, intron 8 of 17) 111043 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 1151.67-4 chrX 100685461 100686346 + 4.33333 NA intron (NM_001370164, intron 14 of 17) intron (NM_001370164, intron 14 of 17) 41704 NM_014467 27286 Hs.306339 NM_014467 ENSG00000102359 SRPX2 BPP|CBPS|PMGX|RESDX|SRPUL sushi repeat containing protein X-linked 2 protein-coding 614.333-2 chr7 97144840 97145273 + 4.33333 NA intron (NM_020186, intron 1 of 1) L1PB1|LINE|L1 28463 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 557.833-2 chr2 235766216 235766586 + 4.33333 NA intron (NM_001037131, intron 6 of 17) intron (NM_001037131, intron 6 of 17) -248480 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 1225.5-2 chr3 133423397 133424227 + 4.33333 NA intron (NM_003571, intron 1 of 6) intron (NM_003571, intron 1 of 6) 23756 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 1040-3 chr19 44844745 44845483 + 4.33333 NA Intergenic Intergenic -1183 NM_001042724 5819 Hs.655455 NM_002856 ENSG00000130202 NECTIN2 CD112|HVEB|PRR2|PVRL2|PVRR2 nectin cell adhesion molecule 2 protein-coding 1708.83 chr1 68119972 68120726 + 4.33333 NA intron (NR_040077, intron 7 of 9) intron (NR_040077, intron 7 of 9) 63261 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 854.667-2 chr2 231612277 231612758 + 4.33333 NA Intergenic Intergenic 19653 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 1168.67-2 chr17 8410136 8410729 + 4.33333 NA Intergenic Intergenic -12605 NM_001146684 643904 Hs.526550 NM_001146684 ENSG00000189051 RNF222 - ring finger protein 222 protein-coding 1348.33 chr1 25101221 25102022 + 4.33333 NA Intergenic Intergenic 78118 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 871.667 chr13 25574272 25574720 + 4.33333 NA intron (NM_016529, intron 18 of 36) MER46C|DNA|TcMar-Tigger 105722 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 940.5 chr9 34985298 34985834 + 4.33333 NA non-coding (NR_109756, exon 2 of 2) non-coding (NR_109756, exon 2 of 2) 3813 NR_109756 101926900 Hs.545814 NR_109756 ENSG00000281491 DNAJB5-DT DNAJB5-AS1 DNAJB5 divergent transcript ncRNA 1591 chr11 133134198 133135060 + 4.33333 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -190861 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 1086-2 chr6 41066794 41067499 + 4.33333 NA 3' UTR (NM_001329692, exon 5 of 5) 3' UTR (NM_001329692, exon 5 of 5) 4694 NM_001329688 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 646.166 chr2 232013785 232014245 + 4.33333 NA intron (NR_046477, intron 1 of 18) intron (NR_046477, intron 1 of 18) 52302 NR_046476 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 1321.67 chr10 116521358 116522067 + 4.33333 NA Intergenic Intergenic -24219 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 1993.17 chr11 12893989 12895030 + 4.33333 NA intron (NM_021961, intron 9 of 12) intron (NM_021961, intron 9 of 12) 95039 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 791.333 chr8 103776360 103776702 + 4.33333 NA intron (NM_001348497, intron 3 of 22) BLACKJACK|DNA|hAT-Blackjack -42689 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 1435.17 chr17 50272888 50273970 + 4.33333 NA intron (NM_001168215, intron 1 of 5) intron (NM_001168215, intron 1 of 5) -1037 NM_153229 162461 Hs.224630 NM_153229 ENSG00000167105 TMEM92 - transmembrane protein 92 protein-coding 1460.33 chr1 89804517 89805903 + 4.33333 NA Intergenic Intergenic -15822 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 414.5-3 chr11 75547537 75547947 + 4.33333 NA Intergenic Intergenic -14511 NM_001207014 871 Hs.596449 NM_001235 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46 serpin family H member 1 protein-coding 991.833-2 chr22 22206101 22206718 + 4.33333 NA Intergenic Intergenic -38377 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 887-2 chr2 96509004 96509975 + 4.33333 NA Intergenic Intergenic -1380 NR_104346 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 1110.5 chr1 28877160 28877685 + 4.33333 NA Intergenic Intergenic -9669 NM_203342 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 1989 chr2 70919434 70920443 + 4.33333 NA intron (NM_012476, intron 1 of 2) intron (NM_012476, intron 1 of 2) -15962 NM_001692 525 Hs.64173 NM_001692 ENSG00000116039 ATP6V1B1 ATP6B1|RTA1B|VATB|VMA2|VPP3 ATPase H+ transporting V1 subunit B1 protein-coding 1312.5 chrX 101407904 101408710 + 4.33333 NA promoter-TSS (NM_000169) promoter-TSS (NM_000169) 85 NM_019597 3188 Hs.432485 NM_019597 ENSG00000126945 HNRNPH2 FTP3|HNRPH'|HNRPH2|MRXSB|NRPH2|hnRNPH' heterogeneous nuclear ribonucleoprotein H2 protein-coding 1667.33-2 chr4 40897357 40898595 + 4.33333 NA intron (NM_173075, intron 9 of 16) intron (NM_173075, intron 9 of 16) -40784 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 1169.33-2 chr2 17645996 17646515 + 4.33333 NA intron (NM_001366805, intron 2 of 2) intron (NM_001366805, intron 2 of 2) 105559 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 866.666 chr1 95041817 95042099 + 4.33333 NA intron (NM_001305242, intron 2 of 4) intron (NM_001305242, intron 2 of 4) -19638 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 1016.83 chr10 13659803 13660355 + 4.33333 NA intron (NM_001318336, intron 19 of 23) intron (NM_001318336, intron 19 of 23) 47488 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 1178.67 chr1 58739672 58740436 + 4.33333 NA Intergenic Intergenic -39992 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 745.5-2 chr3 173220763 173221142 + 4.33333 NA Intergenic L1M3f|LINE|L1 -79717 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 1462 chrX 49043547 49044351 + 4.33333 NA promoter-TSS (NM_006521) promoter-TSS (NM_006521) -592 NM_001282142 7030 Hs.730740 NM_006521 ENSG00000068323 TFE3 RCCP2|RCCX1|TFEA|bHLHe33 transcription factor binding to IGHM enhancer 3 protein-coding 720.834 chr6 138766069 138766606 + 4.33333 NA intron (NR_161205, intron 1 of 2) intron (NR_161205, intron 1 of 2) -7183 NM_015439 25901 Hs.412019 NM_015439 ENSG00000024862 CCDC28A C6orf80|CCRL1AP coiled-coil domain containing 28A protein-coding 726.667-2 chrX 47193261 47193852 + 4.33333 NA promoter-TSS (NM_003334) promoter-TSS (NM_003334) -273 NM_003334 7317 Hs.533273 NM_003334 ENSG00000130985 UBA1 A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X ubiquitin like modifier activating enzyme 1 protein-coding 1026.17 chr2 39229746 39230702 + 4.33333 NA promoter-TSS (NM_001346911) promoter-TSS (NM_001346911) -636 NM_001346911 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 1656.83 chr1 71080948 71081691 + 4.33333 NA promoter-TSS (NR_046217) promoter-TSS (NR_046217) -5 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 866.166 chr4 49032308 49032576 + 4.33333 NA intron (NM_001286791, intron 11 of 15) intron (NM_001286791, intron 11 of 15) 45800 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1737.83 chr12 59149619 59150663 + 4.33333 NA Intergenic Intergenic -229603 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 1031.67-3 chr9 3732509 3732861 + 4.33333 NA Intergenic Intergenic 64599 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 1129.5 chr12 27014352 27015045 + 4.33333 NA promoter-TSS (NM_016551) promoter-TSS (NM_016551) -314 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 2072 chr1 110765801 110766716 + 4.33333 NA Intergenic Intergenic -91318 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 1185.33 chr7 55641084 55641627 + 4.33333 NA Intergenic L1M3f|LINE|L1 46677 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 885.166-2 chr12 17641992 17642563 + 4.33333 NA Intergenic Intergenic -31022 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 1331 chr1 101357238 101357837 + 4.33333 NA intron (NR_126402, intron 4 of 4) intron (NR_126402, intron 4 of 4) 33700 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 782.166 chr2 100381059 100381817 + 4.33333 NA Intergenic Intergenic 36230 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 1057-4 chr9 94555025 94555405 + 4.33333 NA non-coding (NR_121566, exon 1 of 3) non-coding (NR_121566, exon 1 of 3) 170 NR_121566 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 ncRNA 1185.5-2 chr9 35902915 35903591 + 4.33333 NA Intergenic Intergenic -2949 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 968.334 chr10 49518924 49519620 + 4.33333 NA intron (NM_001277058, intron 5 of 5) intron (NM_001277058, intron 5 of 5) 5009 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 1008.67 chr1 106022279 106022979 + 4.33333 NA intron (NR_146609, intron 3 of 5) intron (NR_146609, intron 3 of 5) 5624 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 999.667 chr10 101060686 101061212 + 4.33333 NA promoter-TSS (NM_001319303) promoter-TSS (NM_001319303) -293 NM_001319303 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 906.333 chr1 11262542 11262960 + 4.33333 NA promoter-TSS (NM_004958) promoter-TSS (NM_004958) -200 NM_004958 2475 Hs.338207 NM_004958 ENSG00000198793 MTOR FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS mechanistic target of rapamycin kinase protein-coding 630 chr1 233791269 233791623 + 4.33333 NA Intergenic Intergenic -113230 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 974.501 chr3 143951271 143952024 + 4.33333 NA Intergenic Intergenic -20151 NM_001363944 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 972.167 chr1 119870868 119871356 + 4.33333 NA Intergenic Intergenic 25403 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 1123.17 chr5 35926378 35927303 + 4.33333 NA intron (NM_144647, intron 1 of 4) intron (NM_144647, intron 1 of 4) 11782 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 575.833-2 chr8 142609022 142609535 + 4.33333 NA Intergenic Intergenic 5201 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 1376.33 chr14 49461368 49462405 + 4.33333 NA Intergenic MIRb|SINE|MIR 124494 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 1313.17 chr1 188782020 188782682 + 4.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 1338723 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 1176.66 chr18 48445285 48446014 + 4.33333 NA Intergenic Intergenic -33064 NM_001371287 1774.83 chr1 209823016 209824065 + 4.33333 NA Intergenic Intergenic -4432 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 1390.33 chr19 44500174 44501027 + 4.33333 NA promoter-TSS (NM_001288762) promoter-TSS (NM_001288762) -78 NM_001278508 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 877.166 chr14 56579256 56579771 + 4.33333 NA promoter-TSS (NM_017799) promoter-TSS (NM_017799) -285 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 2058.33 chr10 63976363 63977752 + 4.33333 NA Intergenic Intergenic -455167 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 1520.5 chr20 47724931 47725739 + 4.33333 NA intron (NM_198596, intron 3 of 20) MER20B|DNA|hAT-Charlie 60729 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 1147.33 chr6 26065542 26066305 + 4.33333 NA Intergenic Intergenic -9452 NM_005319 3006 Hs.7644 NM_005319 ENSG00000187837 HIST1H1C H1.2|H1C|H1F2|H1s-1 histone cluster 1 H1 family member c protein-coding 627.666 chr5 151684732 151685043 + 4.33333 NA intron (NR_109873, intron 3 of 4) intron (NR_109873, intron 3 of 4) 2028 NM_001309444 6678 Hs.111779 NM_003118 ENSG00000113140 SPARC BM-40|OI17|ON secreted protein acidic and cysteine rich protein-coding 1394-3 chr3 88003003 88003913 + 4.33333 NA Intergenic Intergenic 20882 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 1128.33 chr8 61809807 61810467 + 4.33333 NA Intergenic Intergenic -79702 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 1255.83-2 chr4 56301335 56301969 + 4.33333 NA intron (NM_020722, intron 4 of 10) intron (NM_020722, intron 4 of 10) 85839 NM_001323899 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 1800.17 chr6 83514823 83515695 + 4.33333 NA intron (NM_153362, intron 1 of 1) intron (NM_153362, intron 1 of 1) 2725 NM_153362 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 1380.17 chr8 27596883 27597624 + 4.33333 NA non-coding (NR_045494, exon 9 of 9) non-coding (NR_045494, exon 9 of 9) 13498 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 1359-2 chr2 189412110 189413790 + 4.33333 NA Intergenic Intergenic -28483 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 1140.33-2 chr11 88103508 88103912 + 4.33333 NA Intergenic LTR41C|LTR|ERVL 71733 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 1251.5-4 chr5 58497726 58498806 + 4.33333 NA Intergenic Intergenic 6831 NM_001304429 202309 Hs.547697 NM_152687 ENSG00000175857 GAPT C5orf29 GRB2 binding adaptor protein, transmembrane protein-coding 1309.5 chr6 146857389 146857961 + 4.33333 NA intron (NR_034115, intron 8 of 10) intron (NR_034115, intron 8 of 10) -53851 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 1069.5 chr15 66851103 66851845 + 4.33333 NA Intergenic Intergenic 105041 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 1178.83 chr2 96174422 96175132 + 4.33333 NA Intergenic Intergenic -29337 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 1191.33-2 chr8 79684386 79685013 + 4.33333 NA Intergenic GA-rich|Low_complexity|Low_complexity 73582 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 771.834-3 chr6 108541927 108542287 + 4.33333 NA Intergenic Intergenic -17718 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 857.833 chr20 3676474 3676849 + 4.33333 NA intron (NM_153202, intron 3 of 20) AluSx|SINE|Alu 6029 NM_001282447 80332 Hs.173716 NM_025220 ENSG00000149451 ADAM33 C20orf153|DJ964F7.1 ADAM metallopeptidase domain 33 protein-coding 1294.17-2 chr20 14055087 14055613 + 4.33333 NA intron (NM_001351663, intron 2 of 17) intron (NM_001351663, intron 2 of 17) 59834 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 1361.83 chr16 2926967 2927944 + 4.33333 NA intron (NM_020912, intron 2 of 8) HERVK-int|LTR|ERVK 15476 NM_032296 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 705.667-2 chr3 185677310 185677649 + 4.33333 NA intron (NR_138486, intron 7 of 15) L1MB2|LINE|L1 -35773 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 743.834 chr14 78758285 78758738 + 4.33333 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 354792 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1548.5-2 chr8 60051755 60052663 + 4.33333 NA Intergenic Intergenic 229191 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 2324.5 chr6 55444535 55446213 + 4.33333 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 117905 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 967.333-2 chr1 207868936 207869518 + 4.33333 NA Intergenic CpG 41898 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 920.833 chr2 164737553 164737867 + 4.33333 NA intron (NM_001365670, intron 3 of 13) intron (NM_001365670, intron 3 of 13) -49933 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 681.334 chr2 147082792 147083022 + 4.33333 NA Intergenic Intergenic 495850 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 2081.17 chr2 76197402 76199164 + 4.33333 NA Intergenic Intergenic -487368 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 1066.67 chr2 235746475 235747083 + 4.33333 NA intron (NM_001037131, intron 5 of 17) intron (NM_001037131, intron 5 of 17) -228858 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 1576.83 chr16 49491909 49492651 + 4.33333 NA intron (NM_001271620, intron 7 of 7) intron (NM_001271620, intron 7 of 7) 26305 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 804.666 chr7 93442535 93443122 + 4.33333 NA intron (NM_001164738, intron 8 of 12) intron (NM_001164738, intron 8 of 12) 40027 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 1285.83-3 chr20 13105637 13106293 + 4.33333 NA intron (NM_001349945, intron 7 of 12) intron (NM_001349945, intron 7 of 12) 96993 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 1296 chr12 87848034 87849210 + 4.33333 NA Intergenic Intergenic -63911 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 1420.83 chr6 41681988 41682634 + 4.33333 NA Intergenic Intergenic 43843 NM_001300806 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 1682.5-2 chr5 98771113 98772173 + 4.33333 NA intron (NR_033932, intron 1 of 1) intron (NR_033932, intron 1 of 1) 1441 NR_033932 503569 Hs.586188 NR_033932 ENSG00000246763 RGMB-AS1 - RGMB antisense RNA 1 ncRNA 819.5 chr1 119743849 119744469 + 4.33333 NA TTS (NM_006623) TTS (NM_006623) 24773 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 906.333-4 chr6 90479283 90479812 + 4.33333 NA Intergenic Intergenic 107525 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 1774.33 chr8 74365754 74366675 + 4.33333 NA 3' UTR (NM_001362929, exon 6 of 6) 3' UTR (NM_001362929, exon 6 of 6) 15811 NM_018972 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 2316 chr20 58209217 58210491 + 4.33333 NA Intergenic Intergenic 18799 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 437.834-2 chr3 115836910 115837396 + 4.33333 NA intron (NM_001318915, intron 6 of 8) intron (NM_001318915, intron 6 of 8) 67973 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 1124-2 chr8 106080645 106081428 + 4.33333 NA Intergenic Intergenic -20533 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 1677.67 chr18 70491344 70492469 + 4.33333 NA Intergenic Intergenic -107315 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 1188 chr8 55520758 55521339 + 4.33333 NA promoter-TSS (NR_134323) promoter-TSS (NR_134323) -70 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 1136.5 chr12 62438072 62438934 + 4.33333 NA Intergenic Intergenic -28323 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 1510.17 chr11 30127889 30128749 + 4.33333 NA Intergenic Intergenic -102695 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 1359.67 chr2 102806046 102806860 + 4.33333 NA intron (NM_001321345, intron 4 of 4) intron (NM_001321345, intron 4 of 4) 44422 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 693.833 chr19 12563986 12564219 + 4.33333 NA Intergenic Intergenic -12620 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 1194.33-2 chr14 67618338 67619246 + 4.33333 NA Intergenic Intergenic -1128 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 964.833 chr5 127313567 127314583 + 4.33333 NA intron (NM_001308119, intron 2 of 14) intron (NM_001308119, intron 2 of 14) 23279 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 1108.33-2 chr2 189750848 189751478 + 4.33333 NA intron (NR_148883, intron 7 of 8) intron (NR_148883, intron 7 of 8) -11617 NR_102429 101409258 Hs.738558 NR_102429 OSGEPL1-AS1 - OSGEPL1 antisense RNA 1 ncRNA 1451.67 chr1 96235927 96237116 + 4.33333 NA Intergenic Intergenic 137604 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 851.668 chr3 15202638 15203432 + 4.33333 NA intron (NR_027927, intron 1 of 4) intron (NR_027927, intron 1 of 4) 2924 NR_027927 344875 Hs.722756 NR_027927 ENSG00000230524 COL6A4P1 COL6A4|COL6A4P|DIVA|DVWA|VWA6 collagen type VI alpha 4 pseudogene 1 pseudo 997.834 chr1 91997425 91998022 + 4.33333 NA intron (NM_001726, intron 15 of 18) intron (NM_001726, intron 15 of 18) -32262 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 949.833 chr10 100878324 100878824 + 4.33333 NA Intergenic Intergenic -34389 NM_018121 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 1502.67 chr10 73885993 73886695 + 4.33333 NA Intergenic Intergenic -11753 NM_001204492 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 1175.83 chr2 158024214 158024750 + 4.33333 NA intron (NM_001135098, intron 2 of 8) intron (NM_001135098, intron 2 of 8) 29303 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 832.833 chr12 56223906 56224461 + 4.33333 NA promoter-TSS (NM_024068) promoter-TSS (NM_024068) -159 NM_024068 79035 Hs.240170 NM_024068 ENSG00000139579 NABP2 OBFC2B|SOSS-B1|SSB1|hSSB1 nucleic acid binding protein 2 protein-coding 1672.17 chr9 34603497 34604321 + 4.33333 NA Intergenic Intergenic 8188 NM_148179 138716 Hs.15961 NM_148178 ENSG00000164967 RPP25L C9orf23|bA296L22.5 ribonuclease P/MRP subunit p25 like protein-coding 921.833 chr17 49707728 49708375 + 4.33333 NA promoter-TSS (NM_005827) promoter-TSS (NM_005827) -87 NM_001278784 10237 Hs.154073 NM_005827 ENSG00000121073 SLC35B1 UGTREL1 solute carrier family 35 member B1 protein-coding 1086.33-4 chr7 107879266 107880114 + 4.33333 NA Intergenic Intergenic -11417 NM_001289752 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 521.166-2 chr6 53651113 53651399 + 4.33333 NA 3' UTR (NM_001003760, exon 3 of 3) 3' UTR (NM_001003760, exon 3 of 3) 14500 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 1483.67 chr1 25520434 25521096 + 4.33333 NA Intergenic Intergenic -22820 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 447.5-2 chr12 24778917 24779143 + 4.33333 NA Intergenic Intergenic 123192 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 1257-2 chr4 52376073 52376549 + 4.33333 NA Intergenic Intergenic 280228 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 1041-2 chr6 26607240 26607768 + 4.33333 NA Intergenic LTR50|LTR|ERVL 10551 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 1656.33 chr15 100627694 100628325 + 4.33333 NA intron (NM_198243, intron 4 of 5) intron (NM_198243, intron 4 of 5) 25420 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 1450.17 chr1 28517718 28518539 + 4.33333 NA promoter-TSS (NM_001048194) promoter-TSS (NM_001048194) -98 NM_001048195 1104 Hs.469723 NM_001269 ENSG00000180198 RCC1 CHC1|RCC1-I|SNHG3-RCC1 regulator of chromosome condensation 1 protein-coding 1227.67 chr10 66925315 66926239 + 4.33333 NA promoter-TSS (NM_178011) promoter-TSS (NM_178011) -259 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 1453 chr1 240149267 240150131 + 4.33333 NA intron (NM_020066, intron 2 of 17) intron (NM_020066, intron 2 of 17) 57816 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 993.168 chr1 88800325 88800812 + 4.33333 NA intron (NM_001320707, intron 8 of 20) MER119|DNA|hAT-Charlie 90999 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 1166.5-4 chr9 130770534 130771342 + 4.33333 NA intron (NM_007313, intron 1 of 10) intron (NM_007313, intron 1 of 10) 57057 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 1276 chr12 51341184 51341964 + 4.33333 NA intron (NM_001971, intron 4 of 7) intron (NM_001971, intron 4 of 7) 5105 NM_001971 1990 Hs.348395 NM_001971 ENSG00000139610 CELA1 ELA1 chymotrypsin like elastase 1 protein-coding 1959 chr12 22683878 22685459 + 4.33333 NA intron (NM_018638, intron 7 of 7) intron (NM_018638, intron 7 of 7) 59497 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 1060-3 chr6 10429752 10430248 + 4.33333 NA non-coding (NR_027793, exon 3 of 3) non-coding (NR_027793, exon 3 of 3) -4329 NR_132993 106660610 Hs.575376 NR_132993 ENSG00000229401 MIR5689HG - MIR5689 host gene ncRNA 1377.5 chr15 97235245 97236253 + 4.33333 NA Intergenic Intergenic 286062 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 1509.17-2 chr19 17346033 17346650 + 4.33333 NA Intergenic Intergenic 8788 NM_032620 84705 Hs.334885 NM_032620 ENSG00000130299 GTPBP3 COXPD23|GTPBG3|MSS1|MTGP1|THDF1 GTP binding protein 3, mitochondrial protein-coding 1506.17 chr7 7595003 7596211 + 4.33333 NA intron (NR_163250, intron 9 of 11) intron (NR_163250, intron 9 of 11) 27581 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 1050.5 chr19 42184540 42185061 + 4.33333 NA Intergenic L2c|LINE|L2 32877 NR_073046 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 718.666 chr4 122577810 122578239 + 4.33333 NA Intergenic Charlie23a|DNA|hAT-Charlie -40959 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 1583.66 chr3 85820833 85822033 + 4.33333 NA intron (NR_046752, intron 1 of 3) intron (NR_046752, intron 1 of 3) 6617 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 1412.67-2 chr5 154072042 154072922 + 4.33333 NA Intergenic Intergenic 33515 NM_005927 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibril associated protein 3 protein-coding 461.5 chr2 25991652 25991929 + 4.33333 NA Intergenic Intergenic -9293 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 1154.67 chr11 123023046 123023588 + 4.33333 NA Intergenic Intergenic 5751 NR_027288 341056 Hs.620309 NR_027288 LOC341056 - SUMO1 activating enzyme subunit 1 pseudogene pseudo 1269.33 chr11 102733036 102733663 + 4.33333 NA Intergenic Intergenic -8395 NM_001304442 4317 Hs.161839 NM_002424 ENSG00000118113 MMP8 CLG1|HNC|MMP-8|PMNL-CL matrix metallopeptidase 8 protein-coding 2316.5 chr8 105905704 105906788 + 4.33333 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 154257 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 1027.83 chr15 71532707 71533302 + 4.33333 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -14232 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 975.499 chr2 238263473 238263923 + 4.33333 NA intron (NM_022817, intron 9 of 22) intron (NM_022817, intron 9 of 22) -23660 NM_001142853 55502 Hs.42949 NM_018645 ENSG00000144485 HES6 C-HAIRY1|HES-6|bHLHb41|bHLHc23 hes family bHLH transcription factor 6 protein-coding 1224.67 chr14 20855652 20856134 + 4.33333 NA Intergenic Intergenic -35510 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 765.666 chr3 196519300 196519799 + 4.33333 NA Intergenic HUERS-P3-int|LTR|ERV1 -4203 NM_001077657 255798 Hs.631933 NM_001077657 ENSG00000214097 SMCO1 C3orf43 single-pass membrane protein with coiled-coil domains 1 protein-coding 638 chr17 41579497 41579824 + 4.33333 NA Intergenic Intergenic 7235 NM_000526 3861 Hs.654380 NM_000526 ENSG00000186847 KRT14 CK14|EBS3|EBS4|K14|NFJ keratin 14 protein-coding 1166.67 chr12 117849834 117850497 + 4.33333 NA intron (NM_173598, intron 3 of 19) intron (NM_173598, intron 3 of 19) 118825 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 1033.5-2 chr2 118881311 118881971 + 4.33333 NA Intergenic Intergenic -33458 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 622.166 chr5 96752604 96752918 + 4.33333 NA intron (NM_001042446, intron 15 of 26) intron (NM_001042446, intron 15 of 26) 9159 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 1838.83 chr7 93374283 93375225 + 4.33333 NA Intergenic Intergenic 108101 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 1562.17 chr9 34403588 34404411 + 4.33333 NA intron (NM_001184943, intron 2 of 5) intron (NM_001184943, intron 2 of 5) -6189 NM_032596 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 1641.33 chr17 59154251 59155949 + 4.33333 NA promoter-TSS (NM_018304) promoter-TSS (NM_018304) 86 NM_182620 348235 Hs.463607 NM_182620 ENSG00000182628 SKA2 FAM33A spindle and kinetochore associated complex subunit 2 protein-coding 1293-2 chr8 105772782 105773660 + 4.33333 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 287282 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 580.833-2 chr12 52327610 52328120 + 4.33333 NA Intergenic Intergenic -6467 NM_002282 3889 Hs.720768 NM_002282 ENSG00000170523 KRT83 EKVP5|HB3|Hb-3|KRTHB3|MNLIX keratin 83 protein-coding 1008.5 chr1 161486785 161487466 + 4.33333 NA Intergenic HUERS-P3-int|LTR|ERV1 -18332 NM_021642 2212 Hs.352642 NM_021642 ENSG00000143226 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG receptor IIa protein-coding 1749.5 chr2 88350683 88351442 + 4.33333 NA Intergenic CpG 101631 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 1010.17-2 chr2 54838497 54839127 + 4.33333 NA intron (NM_001039753, intron 6 of 40) intron (NM_001039753, intron 6 of 40) 113800 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 811.167 chr4 74874715 74875188 + 4.33333 NA Intergenic Intergenic -58165 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 856.667-2 chr8 117650200 117650617 + 4.33333 NA Intergenic Intergenic 129695 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 1178-3 chr7 14691486 14692124 + 4.33333 NA intron (NM_001350717, intron 9 of 24) intron (NM_001350717, intron 9 of 24) 149645 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 1087.67 chr5 151239208 151239708 + 4.33333 NA Intergenic Intergenic -13727 NM_000405 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 945.833 chr14 71103814 71104453 + 4.33333 NA intron (NM_014982, intron 32 of 35) intron (NM_014982, intron 32 of 35) 196674 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 1103 chr20 47383936 47384617 + 4.33333 NA non-coding (NR_146494, exon 4 of 4) non-coding (NR_146494, exon 4 of 4) 27118 NR_146494 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 1089.5 chr10 29304522 29305373 + 4.33333 NA intron (NM_032517, intron 3 of 4) intron (NM_032517, intron 3 of 4) 15877 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 1367.17 chr8 100827046 100827870 + 4.33333 NA Intergenic Intergenic -105370 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 1607.5-2 chr14 59483283 59484516 + 4.33333 NA promoter-TSS (NM_001331159) promoter-TSS (NM_001331159) -324 NM_001331159 112849 Hs.729061 NM_144581 ENSG00000126790 L3HYPDH C14orf149 trans-L-3-hydroxyproline dehydratase protein-coding 2065.83 chr11 96463647 96465715 + 4.33333 NA intron (NR_047481, intron 1 of 4) intron (NR_047481, intron 1 of 4) 42196 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 847.666 chr1 39538997 39539779 + 4.33333 NA intron (NR_144357, intron 8 of 11) MER20B|DNA|hAT-Charlie 20310 NR_144357 728448 Hs.472508 NR_003929 ENSG00000243970 PPIEL PPIEP1 peptidylprolyl isomerase E like pseudogene pseudo 1730.33 chr12 7018577 7019267 + 4.33333 NA promoter-TSS (NM_005768) promoter-TSS (NM_005768) -446 NM_005768 10162 Hs.655248 NM_005768 ENSG00000111684 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 1796.67-2 chr6 161418309 161419351 + 4.33333 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -52147 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 1195.17-2 chr2 56749062 56749625 + 4.33333 NA Intergenic Intergenic -563573 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1575.5 chr2 178891263 178892393 + 4.33333 NA intron (NM_001316745, intron 8 of 11) L2c|LINE|L2 -84405 NM_133379 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 1400.67-2 chr3 58463366 58464199 + 4.33333 NA Intergenic Intergenic -28314 NM_001128214 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 749.167 chr1 163528678 163529300 + 4.33333 NA Intergenic Intergenic -105798 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 1327.5-2 chr3 45659481 45660325 + 4.33333 NA intron (NM_014240, intron 2 of 7) intron (NM_014240, intron 2 of 7) 28979 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 1375.5-2 chr2 72579543 72580189 + 4.33333 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 246167 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 1743.33 chr10 67779650 67781363 + 4.33333 NA Intergenic AluJb|SINE|Alu 57673 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 1499.83 chr10 28431894 28432562 + 4.33333 NA TTS (NR_134496) TTS (NR_134496) 63585 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 1144.33 chr6 56637155 56638187 + 4.33333 NA intron (NM_001144770, intron 19 of 94) intron (NM_001144770, intron 19 of 94) 5218 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 707.167 chr20 1469806 1470537 + 4.33333 NA Intergenic LTR60|LTR|ERV1 -2479 NM_016143 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 875 chr12 53099374 53099837 + 4.33333 NA intron (NM_002178, intron 1 of 3) intron (NM_002178, intron 1 of 3) 1938 NM_002178 3489 Hs.274313 NM_002178 ENSG00000167779 IGFBP6 IBP6 insulin like growth factor binding protein 6 protein-coding 876.5-2 chr17 82767078 82767789 + 4.33333 NA intron (NM_005993, intron 4 of 38) AluSx|SINE|Alu 15368 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 1282 chr17 68435922 68436774 + 4.33333 NA intron (NM_001320772, intron 4 of 11) intron (NM_001320772, intron 4 of 11) -11800 NR_030365 693220 NR_030365 ENSG00000207561 MIR635 MIRN635|hsa-mir-635 microRNA 635 ncRNA 2078.17 chr5 147949090 147950582 + 4.33333 NA Intergenic Intergenic -43298 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 433-7 chr2 36009304 36009500 + 4.33333 NA Intergenic Intergenic 346168 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 1546.17 chr10 110136760 110137622 + 4.33333 NA Intergenic Intergenic -70414 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 1481-2 chr12 54748989 54750039 + 4.33333 NA Intergenic Intergenic -101149 NM_001300854 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 1346.67 chr20 22312553 22313510 + 4.33333 NA Intergenic Intergenic -30230 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 1201.5 chr1 159214126 159214974 + 4.33333 NA Intergenic Intergenic 9675 NM_001122951 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 1604.33-2 chr8 72847116 72848107 + 4.33333 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 115566 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 1438.83 chr8 79615077 79616047 + 4.33333 NA intron (NM_007029, intron 1 of 4) intron (NM_007029, intron 1 of 4) 4445 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 1107 chr1 175480883 175481349 + 4.33333 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) 262479 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 426.833-6 chr8 125700465 125700886 + 4.33333 NA Intergenic Intergenic 250522 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1933 chr6 99745906 99747347 + 4.33333 NA Intergenic Intergenic 139852 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 1213 chr3 23888452 23889032 + 4.33333 NA intron (NM_003341, intron 4 of 5) intron (NM_003341, intron 4 of 5) -27803 NM_002948 6138 Hs.381219 NM_002948 ENSG00000174748 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 851.333 chr18 59837474 59838064 + 4.33333 NA Intergenic Intergenic -62227 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 1335.17-2 chr4 10157570 10158232 + 4.33333 NA Intergenic Intergenic -41102 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 950.5-2 chr14 22872695 22873153 + 4.33333 NA intron (NM_001329226, intron 2 of 7) MIRc|SINE|MIR 1184 NM_014045 26020 Hs.525232 NM_014045 ENSG00000197324 LRP10 LRP-10|LRP9|MST087|MSTP087 LDL receptor related protein 10 protein-coding 1105.33-2 chr8 64417887 64418294 + 4.33333 NA Intergenic Intergenic 38941 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 1274.33 chr13 114226646 114227341 + 4.33333 NA Intergenic AluJb|SINE|Alu -7852 NM_001330105 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 1355.17 chr3 119098442 119099513 + 4.16667 NA intron (NM_152538, intron 3 of 8) intron (NM_152538, intron 3 of 8) 47043 NM_001353322 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 846.834 chr13 60448792 60449305 + 4.16667 NA intron (NM_030794, intron 3 of 13) intron (NM_030794, intron 3 of 13) 51828 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 1395.83-2 chr3 94004067 94004904 + 4.16667 NA intron (NM_001174151, intron 2 of 8) intron (NM_001174151, intron 2 of 8) 24112 NM_001001850 415117 Hs.679768 NM_001001850 ENSG00000178750 STX19 - syntaxin 19 protein-coding 1310-3 chr2 88918895 88919764 + 4.16667 NA Intergenic L1MD2|LINE|L1 106959 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 1386.67 chr3 181709287 181709998 + 4.16667 NA intron (NR_075089, intron 3 of 3) intron (NR_075089, intron 3 of 3) -2283 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 1036 chr12 12788563 12789275 + 4.16667 NA 3' UTR (NM_001130415, exon 2 of 2) 3' UTR (NM_001130415, exon 2 of 2) 3260 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 620.5 chr17 73210283 73210478 + 4.16667 NA intron (NM_001289410, intron 1 of 1) intron (NM_001289410, intron 1 of 1) 17325 NM_018714 9382 Hs.103555 NM_018714 ENSG00000166685 COG1 CDG2G|LDLB component of oligomeric golgi complex 1 protein-coding 1303.83-2 chr7 50467602 50468227 + 4.16667 NA intron (NM_001242888, intron 10 of 12) intron (NM_001242888, intron 10 of 12) -17508 NM_001287495 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 1332 chr14 22986041 22986800 + 4.16667 NA TTS (NM_001282969) TTS (NM_001282969) -3869 NM_001289097 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding 1002.33-3 chr7 36670932 36671610 + 4.16667 NA intron (NM_001177507, intron 2 of 19) L2c|LINE|L2 53223 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 1450.67 chr12 91381530 91382473 + 4.16667 NA Intergenic Intergenic -199184 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 558.333 chr1 33612737 33613098 + 4.16667 NA intron (NM_052896, intron 40 of 69) intron (NM_052896, intron 40 of 69) 140272 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 1437.17 chr2 38274552 38275266 + 4.16667 NA Intergenic L2a|LINE|L2 101621 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 1128-2 chr5 4879454 4880001 + 4.16667 NA Intergenic Intergenic 106246 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 920.834 chr10 101050174 101050470 + 4.16667 NA Intergenic CpG -10920 NM_001319303 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 1410 chr17 55717827 55718769 + 4.16667 NA Intergenic Intergenic 4566 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 1828.5 chr16 53054411 53055742 + 4.16667 NA promoter-TSS (NM_025134) promoter-TSS (NM_025134) 85 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 786.334-2 chr9 36328785 36329271 + 4.16667 NA Intergenic Intergenic -51972 NM_001190388 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 614.334-2 chr9 33081223 33081600 + 4.16667 NA Intergenic Intergenic -4737 NM_018225 55234 Hs.655351 NM_018225 ENSG00000122692 SMU1 BWD|SMU-1|fSAP57 SMU1 DNA replication regulator and spliceosomal factor protein-coding 1466 chr10 35635269 35636178 + 4.16667 NA Intergenic Intergenic 5529 NR_039831 100616500 NR_039831 ENSG00000284265 MIR4683 - microRNA 4683 ncRNA 1015.33 chr16 74107707 74108236 + 4.16667 NA Intergenic Intergenic 107550 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 879.833 chr2 161273117 161273753 + 4.16667 NA Intergenic Intergenic -18792 NR_110593 101929512 Hs.666488 NR_110593 LOC101929512 - uncharacterized LOC101929512 ncRNA 739.001 chr17 19449021 19449319 + 4.16667 NA Intergenic LTR47B4|LTR|ERVL 37938 NM_007148 7732 Hs.189482 NM_007148 ENSG00000128482 RNF112 BFP|ZNF179 ring finger protein 112 protein-coding 1837.83-2 chr3 87297617 87298823 + 4.16667 NA Intergenic Intergenic -21636 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 1490.33 chr2 199739550 199740448 + 4.16667 NA Intergenic Intergenic 111174 NM_001350854 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 620.334 chr8 13654654 13655293 + 4.16667 NA Intergenic Intergenic 25283 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 1010.33 chr2 36672082 36672633 + 4.16667 NA Intergenic Intergenic -24333 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 955.833 chr3 112519320 112520255 + 4.16667 NA Intergenic MIRb|SINE|MIR -20315 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 1172.67 chr11 85854545 85855260 + 4.16667 NA promoter-TSS (NM_173556) promoter-TSS (NM_173556) -199 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 1290.5-2 chr16 20383295 20384383 + 4.16667 NA intron (NM_174924, intron 3 of 11) intron (NM_174924, intron 3 of 11) 20898 NM_174924 204474 Hs.376025 NM_174924 ENSG00000169340 PDILT PDIA7 protein disulfide isomerase like, testis expressed protein-coding 1489.5 chr3 185977072 185977974 + 4.16667 NA intron (NR_151491, intron 3 of 3) intron (NR_151491, intron 3 of 3) 17580 NR_151491 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 700.167-4 chrX 80809900 80810537 + 4.16667 NA promoter-TSS (NM_153252) promoter-TSS (NM_153252) -341 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 1138.83 chr9 89318744 89319214 + 4.16667 NA 5' UTR (NM_001282690, exon 1 of 17) 5' UTR (NM_001282690, exon 1 of 17) 128 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 1093.17-3 chr2 119174368 119174950 + 4.16667 NA Intergenic Intergenic -15908 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 1883.66 chr20 19662348 19663269 + 4.16667 NA intron (NM_020689, intron 7 of 16) intron (NM_020689, intron 7 of 16) -223713 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 1031.67 chr5 90783638 90784280 + 4.16667 NA exon (NM_032119, exon 67 of 90) exon (NM_032119, exon 67 of 90) 225162 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 682.167-3 chr5 152532521 152533082 + 4.16667 NA Intergenic Intergenic -127522 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 849.5 chr11 64305093 64305462 + 4.16667 NA promoter-TSS (NM_001282450) promoter-TSS (NM_001282450) -247 NM_004451 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding 1754.33 chr2 43484091 43485185 + 4.16667 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 111336 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 987 chr8 9029743 9030206 + 4.16667 NA exon (NM_001354635, exon 7 of 7).2 exon (NM_001354635, exon 7 of 7).2 -18471 NR_039804 100616350 NR_039804 ENSG00000263407 MIR4660 - microRNA 4660 ncRNA 1368.5-3 chr3 192566434 192567145 + 4.16667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 51767 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 1076-4 chr7 80453830 80454360 + 4.16667 NA Intergenic Intergenic 57969 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 1362.67 chr11 69915212 69915889 + 4.16667 NA Intergenic Intergenic -96134 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 698.167 chr15 40893868 40894537 + 4.16667 NA promoter-TSS (NM_020857) promoter-TSS (NM_020857) -248 NM_020857 57617 Hs.23876 NM_020857 ENSG00000104142 VPS18 PEP3 VPS18 core subunit of CORVET and HOPS complexes protein-coding 823.999 chr8 121369884 121370298 + 4.16667 NA Intergenic Tigger5b|DNA|TcMar-Tigger -269255 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 1892.67 chr3 138935681 138936635 + 4.16667 NA non-coding (NR_121649, exon 3 of 3) non-coding (NR_121649, exon 3 of 3) 7862 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 1341.33 chr15 76057100 76057869 + 4.16667 NA Intergenic Intergenic -2501 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 1572.67 chr2 19863130 19863853 + 4.16667 NA Intergenic Intergenic -5363 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 1002 chr17 40358083 40359082 + 4.16667 NA TTS (NM_000964) TTS (NM_000964) 6155 NM_152219 125111 Hs.444663 NM_152219 ENSG00000183153 GJD3 CX31.9|Cx30.2|GJA11|GJC1 gap junction protein delta 3 protein-coding 699.834 chr1 210448437 210448770 + 4.16667 NA intron (NM_001122834, intron 7 of 11) intron (NM_001122834, intron 7 of 11) 119237 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 1318 chr4 84529071 84529764 + 4.16667 NA Intergenic Intergenic -31183 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 1723.5-2 chr4 81466998 81468509 + 4.16667 NA intron (NM_152545, intron 1 of 13) intron (NM_152545, intron 1 of 13) 4154 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 1345.83 chr10 28627847 28628709 + 4.16667 NA Intergenic Intergenic -49243 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 1000 chr10 97676402 97677084 + 4.16667 NA TTS (NM_018425) TTS (NM_018425) 10498 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 844.834 chr14 52823522 52823806 + 4.16667 NA Intergenic Intergenic -32057 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 952.001 chr1 55277393 55277950 + 4.16667 NA Intergenic Intergenic 52030 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 876.001 chr22 50327079 50327385 + 4.16667 NA promoter-TSS (NM_001001794) promoter-TSS (NM_001001794) -220 NM_001001794 414918 Hs.530380 NM_001001794 ENSG00000205593 DENND6B AFI1B|FAM116B DENN domain containing 6B protein-coding 949.333 chr1 201512610 201513368 + 4.16667 NA intron (NR_160747, intron 1 of 1) L2c|LINE|L2 5776 NR_160747 107985246 NR_160746 LOC107985246 - uncharacterized LOC107985246 ncRNA 536.667-2 chr6 74708756 74709019 + 4.16667 NA Intergenic Intergenic 419895 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 967.333 chr1 204941441 204942174 + 4.16667 NA intron (NM_001160332, intron 2 of 27) intron (NM_001160332, intron 2 of 27) -2419 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 539.167 chr5 83322047 83322332 + 4.16667 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -149485 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 1430.17 chr2 230847795 230848865 + 4.16667 NA Intergenic L1ME4a|LINE|L1 -15855 NM_001287240 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 1292.33 chr2 18749681 18750886 + 4.16667 NA Intergenic Intergenic -160703 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 576.5-2 chr12 54032457 54032789 + 4.16667 NA promoter-TSS (NM_018953) promoter-TSS (NM_018953) -425 NM_018953 3222 Hs.549040 NM_018953 ENSG00000172789 HOXC5 CP11|HOX3|HOX3D homeobox C5 protein-coding 535.834 chr1 169550351 169550840 + 4.16667 NA intron (NM_000130, intron 9 of 24) intron (NM_000130, intron 9 of 24) 35936 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 1681.17 chr21 22791535 22792629 + 4.16667 NA Intergenic Intergenic -287202 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 1240.33 chr14 55437608 55438448 + 4.16667 NA intron (NM_199047, intron 1 of 6) intron (NM_199047, intron 1 of 6) 2517 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 1121.67 chr4 32416835 32417696 + 4.16667 NA Intergenic L1MA9|LINE|L1 66227 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1230.33-2 chr2 225001949 225002484 + 4.16667 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 8324 NR_039641 100616207 NR_039641 ENSG00000263828 MIR4439 - microRNA 4439 ncRNA 1659.67 chr3 107927292 107928151 + 4.16667 NA intron (NR_015394, intron 2 of 2) CpG 44516 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 1164.17-3 chr6 166786165 166787334 + 4.16667 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 75776 NM_001006932 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 980.667 chr11 4539386 4540080 + 4.16667 NA Intergenic Intergenic -5458 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 663.833 chr7 128425910 128426209 + 4.16667 NA Intergenic Intergenic -16077 NM_183243 3614 Hs.654401 NM_000883 ENSG00000106348 IMPDH1 IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608 inosine monophosphate dehydrogenase 1 protein-coding 775.5 chr1 112718406 112718901 + 4.16667 NA Intergenic Intergenic -1914 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 1141.33-2 chr8 78250705 78251507 + 4.16667 NA Intergenic Intergenic -265234 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 1385.83 chr19 48993122 48993925 + 4.16667 NA promoter-TSS (NR_135578) promoter-TSS (NR_135578) 75 NM_001321191 10856 Hs.515846 NM_006666 ENSG00000183207 RUVBL2 CGI-46|ECP-51|ECP51|INO80J|REPTIN|RVB2|TAP54-beta|TIH2|TIP48|TIP49B RuvB like AAA ATPase 2 protein-coding 639.667-2 chr12 6944153 6945080 + 4.16667 NA TTS (NR_023317) TTS (NR_023317) 594 NM_138425 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 1662.5 chr2 213805846 213806588 + 4.16667 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 48150 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 1191.83-2 chr5 146446704 146447304 + 4.16667 NA promoter-TSS (NM_001040006) promoter-TSS (NM_001040006) -329 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 1780.33 chr11 65027241 65027990 + 4.16667 NA non-coding (NR_037650, exon 4 of 11) non-coding (NR_037650, exon 4 of 11) 176 NM_013306 29907 Hs.80132 NM_013306 ENSG00000110025 SNX15 HSAF001435 sorting nexin 15 protein-coding 659 chr3 172711168 172711486 + 4.16667 NA promoter-TSS (NM_001146278) promoter-TSS (NM_001146278) -260 NM_001146276 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 972.667 chr19 44723629 44724272 + 4.16667 NA Intergenic Intergenic -24758 NM_005178 602 Hs.31210 NM_005178 ENSG00000069399 BCL3 BCL4|D19S37 BCL3 transcription coactivator protein-coding 1042.5 chr4 98939954 98940458 + 4.16667 NA Intergenic Intergenic -9569 NM_001968 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 1453.17 chr10 25875379 25876147 + 4.16667 NA Intergenic Intergenic 57947 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 1229.5 chr12 1939666 1940548 + 4.16667 NA Intergenic Intergenic -3531 NR_036546 100271702 Hs.737031 NR_036546 ENSG00000235049 LINC00940 - long intergenic non-protein coding RNA 940 ncRNA 712.5 chr10 84783028 84783684 + 4.16667 NA Intergenic L1MA7|LINE|L1 358187 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 996.5-2 chr2 30208143 30208583 + 4.16667 NA Intergenic MIRc|SINE|MIR 20929 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 1472.17 chr19 48291177 48292063 + 4.16667 NA Intergenic AluSx1|SINE|Alu 20333 NM_001369812 163071 Hs.511883 NM_153608 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 632.167-3 chr3 58560781 58561172 + 4.16667 NA Intergenic Intergenic 16415 NM_001076778 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 614.5-4 chr7 49099572 49099830 + 4.16667 NA Intergenic Intergenic 175154 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 1259.67-2 chr8 11564339 11565034 + 4.16667 NA TTS (NM_001715).2 TTS (NM_001715).2 -11849 NR_040035 83655 Hs.742430 NR_040035 ENSG00000170983 LINC00208 C8orf14|NCRNA00208|VIR35 long intergenic non-protein coding RNA 208 ncRNA 1025.83-3 chr6 138115591 138116128 + 4.16667 NA Intergenic Intergenic -8440 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 950.334 chr1 218171273 218171776 + 4.16667 NA Intergenic Intergenic -113769 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 412.833-4 chr17 40533201 40533532 + 4.16667 NA Intergenic Intergenic 27028 NM_001301718 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 1497.33 chr12 29073211 29074089 + 4.16667 NA Intergenic MLT1J2|LTR|ERVL-MaLR -75628 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 1094 chr3 159252621 159253385 + 4.16667 NA intron (NM_001197113, intron 3 of 10) intron (NM_001197113, intron 3 of 10) -20244 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 1139.83-2 chr22 28253158 28253798 + 4.16667 NA intron (NM_001145418, intron 5 of 22) L2a|LINE|L2 -206391 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 1350 chr3 101803083 101803606 + 4.16667 NA intron (NR_145993, intron 5 of 6) intron (NR_145993, intron 5 of 6) 23680 NM_001348996 91775 Hs.595933 NM_145037 ENSG00000144815 NXPE3 FAM55C|MST115|MSTP115 neurexophilin and PC-esterase domain family member 3 protein-coding 852.833 chr12 119115097 119115709 + 4.16667 NA intron (NM_194286, intron 3 of 12) intron (NM_194286, intron 3 of 12) 61081 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 839.666 chr22 29625103 29625737 + 4.16667 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 21787 NM_181825 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 1493.67 chr9 34379006 34380046 + 4.16667 NA intron (NM_032596, intron 6 of 6) intron (NM_032596, intron 6 of 6) 2063 NM_147169 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 1328.17-4 chr2 34096424 34097193 + 4.16667 NA intron (NR_126403, intron 4 of 5) L2a|LINE|L2 29582 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 847.5 chr6 107675200 107675464 + 4.16667 NA Intergenic Intergenic 56818 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 1074 chr11 45872468 45873245 + 4.16667 NA intron (NM_001127457, intron 11 of 11) intron (NM_001127457, intron 11 of 11) -12795 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding 682.167-2 chr4 15882588 15883072 + 4.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 55910 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 755.667-6 chr8 129303285 129303653 + 4.16667 NA Intergenic L1PA15-16|LINE|L1 -62229 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 1564.17 chr10 11986448 11987276 + 4.16667 NA intron (NM_080599, intron 8 of 21) intron (NM_080599, intron 8 of 21) 55947 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 905.167 chr1 39918919 39919723 + 4.16667 NA Intergenic Intergenic -17404 NM_001033081 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 MYCL proto-oncogene, bHLH transcription factor protein-coding 622.666 chr11 122854110 122854399 + 4.16667 NA intron (NM_019604, intron 4 of 9) intron (NM_019604, intron 4 of 9) -8077 NM_001304782 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 1483.5 chr3 113050851 113051793 + 4.16667 NA Intergenic Intergenic -31651 NM_001319111 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 842.5-2 chr14 22387334 22387831 + 4.16667 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) 45171 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 1121.17 chr14 59511694 59512299 + 4.16667 NA intron (NM_001164399, intron 17 of 19) L1ME1|LINE|L1 27479 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 1219.83-3 chr18 2931985 2932574 + 4.16667 NA intron (NM_014646, intron 8 of 19) intron (NM_014646, intron 8 of 19) 14344 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 487.5-13 chr8 27426091 27426418 + 4.16667 NA intron (NM_173175, intron 5 of 29) intron (NM_173175, intron 5 of 29) -7116 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 840.667 chr11 110173777 110174750 + 4.16667 NA TTS (NM_001260493) TTS (NM_001260493) 80871 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 856.668 chr19 43785285 43785872 + 4.16667 NA Intergenic L2a|LINE|L2 -4605 NM_002250 3783 Hs.10082 NM_002250 ENSG00000104783 KCNN4 DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4 potassium calcium-activated channel subfamily N member 4 protein-coding 1084 chr12 119659132 119660099 + 4.16667 NA Intergenic Intergenic -8518 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 920.167 chr15 94324061 94324856 + 4.16667 NA intron (NM_018349, intron 3 of 21) intron (NM_018349, intron 3 of 21) 26257 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 1205.5 chr10 19788265 19788719 + 4.16667 NA Intergenic MIRb|SINE|MIR -27940 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 1128.83 chr4 104860475 104860979 + 4.16667 NA Intergenic Intergenic -285148 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 1052.33-2 chr8 20376100 20376823 + 4.16667 NA Intergenic Intergenic -72498 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 962.333 chr5 112757753 112758198 + 4.16667 NA intron (NM_001354895, intron 2 of 15) L1MC5|LINE|L1 20090 NM_001354898 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 761.166-2 chr9 100324500 100325016 + 4.16667 NA intron (NM_001161584, intron 9 of 14) intron (NM_001161584, intron 9 of 14) 27813 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 1482.83 chr7 7182083 7182823 + 4.16667 NA promoter-TSS (NM_020156) promoter-TSS (NM_020156) -162 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 593.333-3 chr9 93566235 93566670 + 4.16667 NA TTS (NM_014612) TTS (NM_014612) -10132 NM_005392 5253 Hs.211441 NM_005392 ENSG00000197724 PHF2 CENP-35|GRC5|JHDM1E|KDM7C PHD finger protein 2 protein-coding 520.167-4 chr5 151500701 151501135 + 4.16667 NA Intergenic Intergenic 21230 NR_106752 102465246 NR_106752 ENSG00000276622 MIR6499 hsa-mir-6499|mir-6499 microRNA 6499 ncRNA 528.5-3 chr12 18320001 18320289 + 4.16667 NA intron (NM_001288774, intron 6 of 32) intron (NM_001288774, intron 6 of 32) 58605 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 472.667-2 chr8 125957841 125958009 + 4.16667 NA Intergenic L2|LINE|L2 -6728 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 924.834 chr6 158605412 158605877 + 4.16667 NA intron (NM_020823, intron 7 of 16) intron (NM_020823, intron 7 of 16) -4063 NR_106981 102465694 NR_106981 ENSG00000278571 MIR7161 hsa-mir-7161 microRNA 7161 ncRNA 1295.67 chr13 20828653 20829157 + 4.16667 NA intron (NM_022459, intron 6 of 22) L1MC5|LINE|L1 -54944 NM_001318939 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 EEF1A lysine methyltransferase 1 protein-coding 1662.67 chr2 75627702 75628871 + 4.16667 NA Intergenic Intergenic -18497 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 890.833 chr6 52284527 52285271 + 4.16667 NA promoter-TSS (NM_001366371) promoter-TSS (NM_001366371) -157 NM_001366372 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 647.667 chr4 154806983 154807631 + 4.16667 NA intron (NM_144979, intron 4 of 4) intron (NM_144979, intron 4 of 4) 25802 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 1684.83-2 chr5 59673337 59674643 + 4.16667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 29713 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 1215.5 chr5 155139381 155140009 + 4.16667 NA Intergenic Intergenic 125940 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 1328.16 chr9 126498971 126499679 + 4.16667 NA intron (NM_033446, intron 9 of 9) intron (NM_033446, intron 9 of 9) -88821 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-coding repressor of NFAT ncRNA 1744.5-2 chr4 153085117 153085653 + 4.16667 NA Intergenic Intergenic -66949 NM_001351056 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 603.166 chr1 62407362 62408025 + 4.16667 NA Intergenic Intergenic -28611 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 1023.83-3 chr5 34523065 34523585 + 4.16667 NA Intergenic Intergenic -133003 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 1591.33 chr20 32091644 32092492 + 4.16667 NA intron (NM_001172131, intron 10 of 12) intron (NM_001172131, intron 10 of 12) -17646 NM_014742 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 556.167-6 chr5 149439887 149440292 + 4.16667 NA Intergenic Intergenic 9443 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 1201.17 chr5 158074605 158075469 + 4.16667 NA Intergenic Intergenic -215892 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 909.667-2 chr18 33232008 33232635 + 4.16667 NA intron (NM_001308126, intron 15 of 23) intron (NM_001308126, intron 15 of 23) 208250 NM_001371121 817.5 chr1 92993843 92994516 + 4.16667 NA Intergenic ERVL-E-int|LTR|ERVL -32657 NM_001252273 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 744.334 chr12 95534352 95534841 + 4.16667 NA intron (NM_032147, intron 1 of 5) intron (NM_032147, intron 1 of 5) 13642 NM_001278393 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 1457 chr1 105793389 105794002 + 4.16667 NA Intergenic Intergenic -174760 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 997.501-2 chr5 152142822 152143288 + 4.16667 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 184157 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 1159 chr2 164495682 164496600 + 4.16667 NA intron (NM_004490, intron 12 of 13) intron (NM_004490, intron 12 of 13) 72354 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 1056.17-2 chr7 70856640 70857466 + 4.16667 NA Intergenic Intergenic -275091 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 1465 chr14 76647664 76648848 + 4.16667 NA Intergenic MIRb|SINE|MIR -113212 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 547-3 chr12 106226746 106227000 + 4.16667 NA Intergenic Intergenic 21147 NM_006825 10970 Hs.74368 NM_006825 ENSG00000136026 CKAP4 CLIMP-63|ERGIC-63|p63 cytoskeleton associated protein 4 protein-coding 1135.83-2 chr9 87662816 87663507 + 4.16667 NA intron (NM_004938, intron 18 of 25) intron (NM_004938, intron 18 of 25) -62958 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 1819.5 chr17 40200968 40202444 + 4.16667 NA Intergenic AluSx1|SINE|Alu 8109 NR_106927 102465523 NR_106927 ENSG00000274621 MIR6867 hsa-mir-6867 microRNA 6867 ncRNA 1797.67 chr2 21042092 21043509 + 4.16667 NA intron (NM_000384, intron 2 of 28) intron (NM_000384, intron 2 of 28) 1273 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 2151.83 chr1 80217237 80218738 + 4.16667 NA Intergenic Intergenic -317768 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 1226.5 chr1 18906884 18907546 + 4.16667 NA 3' UTR (NM_001136265, exon 9 of 9) 3' UTR (NM_001136265, exon 9 of 9) -4416 NM_001319218 8659 Hs.77448 NM_003748 ENSG00000159423 ALDH4A1 ALDH4|P5CD|P5CDh aldehyde dehydrogenase 4 family member A1 protein-coding 1371.83 chr7 12496575 12497608 + 4.16667 NA promoter-TSS (NR_136262) promoter-TSS (NR_136262) -155 NR_136262 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 1153.33 chr6 145214666 145215224 + 4.16667 NA Intergenic Intergenic 471932 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 821.667 chr1 224457691 224458053 + 4.16667 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 23023 NM_001322304 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 1942.83 chr5 41843358 41844103 + 4.16667 NA promoter-TSS (NM_001364303) promoter-TSS (NM_001364303) -73 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 1243.33 chr19 45798852 45799683 + 4.16667 NA intron (NM_030785, intron 5 of 5) intron (NM_030785, intron 5 of 5) -6422 NM_004943 1762 Hs.515474 NM_004943 ENSG00000185800 DMWD D19S593E|DMR-N9|DMRN9|gene59 DM1 locus, WD repeat containing protein-coding 772.833 chr11 86218624 86219016 + 4.16667 NA Intergenic Intergenic -25564 NM_001330334 8726 Hs.503510 NM_003797 ENSG00000074266 EED COGIS|HEED|WAIT1 embryonic ectoderm development protein-coding 1051.33 chr1 9784326 9784971 + 4.16667 NA intron (NM_001009566, intron 1 of 18) intron (NM_001009566, intron 1 of 18) 39878 NM_001302883 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 1023.33 chr11 93652218 93652714 + 4.16667 NA Intergenic UCON132b|DNA|hAT-Tip100 -9216 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 1303.83 chr5 169302248 169303077 + 4.16667 NA Intergenic Intergenic -1523 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 1064.33 chr1 111746778 111747676 + 4.16667 NA non-coding (NR_038951, exon 3 of 3) non-coding (NR_038951, exon 3 of 3) 7386 NR_038952 100506343 Hs.485810 NR_038951 ENSG00000227811 INKA2-AS1 FAM212B-AS1 INKA2 antisense RNA 1 ncRNA 574.834 chr13 48095122 48095432 + 4.16667 NA promoter-TSS (NM_001270629) promoter-TSS (NM_001270629) -136 NM_001270629 29079 Hs.181112 NM_014166 ENSG00000136146 MED4 ARC36|DRIP36|HSPC126|TRAP36|VDRIP mediator complex subunit 4 protein-coding 1008.33 chr11 111931663 111932012 + 4.16667 NA intron (NM_001278542, intron 2 of 5) intron (NM_001278542, intron 2 of 5) 4693 NM_001278542 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 2028.33 chr17 47229327 47230351 + 4.16667 NA Intergenic Intergenic 20491 NM_002476 4635 Hs.463300 NM_002476 ENSG00000198336 MYL4 ALC1|AMLC|GT1|PRO1957 myosin light chain 4 protein-coding 935.666-2 chr8 120956768 120957258 + 4.16667 NA Intergenic Intergenic -144967 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 1080-2 chr12 59164927 59165550 + 4.16667 NA Intergenic Intergenic -244700 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 1050.33 chr18 10787110 10787726 + 4.16667 NA intron (NM_022068, intron 15 of 51) intron (NM_022068, intron 15 of 51) -27769 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 989.834-3 chr8 94592422 94592842 + 4.16667 NA Intergenic Intergenic -39114 NM_183009 25962 Hs.202238 NM_015496 ENSG00000164944 VIRMA KIAA1429|MSTP054|fSAP121 vir like m6A methyltransferase associated protein-coding 593.167-2 chr14 21868401 21868840 + 4.16667 NA Intergenic Intergenic -197603 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 1663.33 chr12 14995605 14996577 + 4.16667 NA Intergenic L1MA8|LINE|L1 -5742 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 853.667-3 chr22 42820338 42820787 + 4.16667 NA intron (NM_001142293, intron 8 of 14) MIRb|SINE|MIR 36711 NM_001142293 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 875.5-2 chr9 101601884 101602318 + 4.16667 NA intron (NM_133445, intron 6 of 8) MamTip2|DNA|hAT-Tip100 -7132 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 1221.67-3 chr2 56130406 56131080 + 4.16667 NA Intergenic Intergenic -40361 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 905.833 chr20 35338911 35339426 + 4.16667 NA intron (NM_001184977, intron 5 of 7) intron (NM_001184977, intron 5 of 7) -46743 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 953-2 chr5 97230767 97231211 + 4.16667 NA Intergenic Intergenic -47742 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 1939 chrX 102899924 102901028 + 4.16667 NA intron (NR_146584, intron 15 of 18) intron (NR_146584, intron 15 of 18) -36796 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 986.834-2 chr2 133171283 133171951 + 4.16667 NA intron (NM_207481, intron 5 of 17) intron (NM_207481, intron 5 of 17) -94578 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 1529.5-2 chr11 5475797 5476661 + 4.16667 NA intron (NM_001005567, intron 1 of 4) MIR|SINE|MIR -12456 NM_001005163 390066 Hs.553734 NM_001005163 ENSG00000181609 OR52D1 OR11-43 olfactory receptor family 52 subfamily D member 1 protein-coding 1649.83-2 chr6 157667048 157667925 + 4.16667 NA intron (NM_153746, intron 8 of 8) intron (NM_153746, intron 8 of 8) 138354 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 1154.5 chr3 190883857 190884641 + 4.16667 NA Intergenic MIR3|SINE|MIR 6319 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 1268.17-2 chr8 123822993 123823791 + 4.16667 NA Intergenic Intergenic -28595 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 1355.33-2 chr3 115814582 115815222 + 4.16667 NA intron (NM_002338, intron 6 of 6) intron (NM_002338, intron 6 of 6) 90224 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 840.166 chr9 124415407 124415981 + 4.16667 NA promoter-TSS (NM_002799) promoter-TSS (NM_002799) -252 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 909.834-2 chr2 208254425 208254855 + 4.16667 NA promoter-TSS (NM_001282387) promoter-TSS (NM_001282387) -182 NM_001282386 3417 Hs.593422 NM_005896 ENSG00000138413 IDH1 HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD isocitrate dehydrogenase (NADP(+)) 1, cytosolic protein-coding 1744.33 chr14 34722881 34723761 + 4.16667 NA Intergenic MER119|DNA|hAT-Charlie -8498 NR_028131 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 1296.67 chr18 54392467 54393071 + 4.16667 NA Intergenic Intergenic 34852 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 1827.33 chr5 132064606 132065590 + 4.16667 NA Intergenic Intergenic 4443 NM_000588 3562 Hs.694 NM_000588 ENSG00000164399 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 687 chr2 161250756 161251451 + 4.16667 NA non-coding (NR_110593, exon 2 of 4) non-coding (NR_110593, exon 2 of 4) 3540 NR_110593 101929512 Hs.666488 NR_110593 LOC101929512 - uncharacterized LOC101929512 ncRNA 742.667 chr13 63124662 63125374 + 4.16667 NA Intergenic Intergenic 203076 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 816.333-4 chr8 144373492 144374054 + 4.16667 NA promoter-TSS (NM_174922) promoter-TSS (NM_174922) -274 NM_174922 203054 Hs.283374 NM_174922 ENSG00000173137 ADCK5 - aarF domain containing kinase 5 protein-coding 1894 chr22 28008874 28010234 + 4.16667 NA intron (NM_001145418, intron 14 of 22) intron (NM_001145418, intron 14 of 22) -88942 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 970.167-2 chr8 82443670 82444268 + 4.16667 NA Intergenic Intergenic -468135 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 924.5-3 chr2 142140090 142140762 + 4.16667 NA Intergenic Intergenic -8725 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 1619.83-2 chr22 32266078 32266742 + 4.16667 NA intron (NR_149072, intron 2 of 3) intron (NR_149072, intron 2 of 3) -11063 NM_014227 6527 Hs.130101 NM_014227 ENSG00000100191 SLC5A4 DJ90G24.4|SAAT1|SGLT3 solute carrier family 5 member 4 protein-coding 1433.83 chr17 43909890 43910473 + 4.16667 NA promoter-TSS (NM_001278370) promoter-TSS (NM_001278370) -470 NM_001278370 4355 Hs.514208 NM_005374 ENSG00000108852 MPP2 DLG2 membrane palmitoylated protein 2 protein-coding 1628.83 chr2 163182173 163183264 + 4.16667 NA Intergenic Intergenic -343951 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 822.167 chr5 157342775 157343028 + 4.16667 NA exon (NM_001001343, exon 2 of 2) exon (NM_001001343, exon 2 of 2) 2776 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 1102.83 chr13 57627417 57628101 + 4.16667 NA Intergenic Intergenic -3985 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 990.5 chr1 116574248 116574848 + 4.16667 NA 3' UTR (NM_001542, exon 12 of 12) 3' UTR (NM_001542, exon 12 of 12) -3455 NM_001144822 965 Hs.34341 NM_001779 ENSG00000116815 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 360-7 chr16 86016386 86016804 + 4.16667 NA Intergenic Intergenic 98248 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 832.167 chr14 37593962 37594398 + 4.16667 NA intron (NM_004496, intron 1 of 1) intron (NM_004496, intron 1 of 1) 1069 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 811 chr3 13496217 13496507 + 4.16667 NA intron (NM_001330636, intron 3 of 6) MIR3|SINE|MIR 16056 NM_001330636 79885 Hs.744132 NM_024827 ENSG00000163517 HDAC11 HD11 histone deacetylase 11 protein-coding 1052.83 chr7 101077471 101078134 + 4.16667 NA Intergenic Intergenic -7679 NM_030961 81844 Hs.521092 NM_030961 ENSG00000169871 TRIM56 RNF109 tripartite motif containing 56 protein-coding 1261.83 chr11 16613665 16614637 + 4.16667 NA intron (NM_001367872, intron 2 of 16) CpG 124326 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 1072 chr1 63691753 63692383 + 4.16667 NA Intergenic Intergenic 68852 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 875.667 chr13 36282823 36283239 + 4.16667 NA intron (NM_001198910, intron 2 of 15) intron (NM_001198910, intron 2 of 15) 14783 NM_001144985 728591 Hs.656745 NM_001144981 ENSG00000242715 CCDC169 C13orf38 coiled-coil domain containing 169 protein-coding 696.833 chr16 72400056 72400511 + 4.16667 NA intron (NR_126330, intron 7 of 13) Charlie2b|DNA|hAT-Charlie -227833 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 1163.5 chr1 109776514 109777231 + 4.16667 NA Intergenic Intergenic -12949 NM_133181 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 1388 chr7 91880398 91881174 + 4.16667 NA promoter-TSS (NM_006980) promoter-TSS (NM_006980) -84 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 587.167-3 chr4 45402165 45402375 + 4.16667 NA Intergenic MER57A-int|LTR|ERV1 -675636 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 407.5-4 chr12 53791696 53791890 + 4.16667 NA Intergenic Intergenic -34759 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 1681.83-2 chr3 137032164 137033089 + 4.16667 NA Intergenic CpG 74643 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 951-2 chr20 45043895 45044463 + 4.16667 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 56948 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 1735.5-3 chr20 36919357 36920348 + 4.16667 NA intron (NM_015474, intron 6 of 15) intron (NM_015474, intron 6 of 15) 31856 NM_001363733 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 1022.5 chr9 133742924 133743509 + 4.16667 NA Intergenic Intergenic -3261 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 837.167-2 chr8 26327183 26327990 + 4.16667 NA intron (NM_001177591, intron 2 of 9) intron (NM_001177591, intron 2 of 9) 34370 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 1323 chr16 69339138 69339780 + 4.16667 NA promoter-TSS (NM_001199434) promoter-TSS (NM_001199434) -53 NM_001199434 51388 Hs.585728 NM_016101 ENSG00000132603 NIP7 CGI-37|HSPC031|KD93 nucleolar pre-rRNA processing protein NIP7 protein-coding 1776.17 chr2 70948017 70949066 + 4.16667 NA promoter-TSS (NR_110273) promoter-TSS (NR_110273) 70 NR_110273 101927750 Hs.676120 NR_110273 ENSG00000239322 ATP6V1B1-AS1 - ATP6V1B1 antisense RNA 1 ncRNA 530.833 chr16 83446672 83447086 + 4.16667 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -61467 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 1866.17 chr5 59187901 59189023 + 4.16667 NA intron (NM_006203, intron 3 of 14) intron (NM_006203, intron 3 of 14) 87653 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 841.833-3 chr5 5422199 5422655 + 4.16667 NA promoter-TSS (NM_015325) promoter-TSS (NM_015325) -250 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 1253 chr1 39653424 39654348 + 4.16667 NA Intergenic Intergenic -14243 NM_014571 26508 Hs.472566 NM_014571 ENSG00000163909 HEYL HESR3|HEY3|HRT3|bHLHb33 hes related family bHLH transcription factor with YRPW motif like protein-coding 930.334 chr10 17257608 17258160 + 4.16667 NA Intergenic Intergenic -27899 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 1719.33 chr12 24596335 24597889 + 4.16667 NA Intergenic Intergenic -12944 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 1016.83-4 chr7 35906611 35907382 + 4.16667 NA 3' UTR (NM_001242956, exon 12 of 12) 3' UTR (NM_001242956, exon 12 of 12) 105777 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 622-2 chr3 185354231 185354478 + 4.16667 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) -8782 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 961.334 chr1 180533288 180534004 + 4.16667 NA Intergenic Intergenic -25328 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 583-2 chr2 166904450 166904872 + 4.16667 NA intron (NM_152381, intron 2 of 10) MER124|DNA?|DNA? 16174 NM_152381 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 1257 chr13 42970706 42971211 + 4.16667 NA intron (NM_033255, intron 1 of 10) LTR78|LTR|ERV1 21283 NM_001331228 94240 Hs.546467 NM_033255 ENSG00000133106 EPSTI1 BRESI1 epithelial stromal interaction 1 protein-coding 456.5-2 chr19 4400666 4400969 + 4.16667 NA promoter-TSS (NM_001199944) promoter-TSS (NM_001199944) -270 NM_001199943 6455 Hs.97616 NM_003025 ENSG00000141985 SH3GL1 CNSA1|EEN|SH3D2B|SH3P8 SH3 domain containing GRB2 like 1, endophilin A2 protein-coding 1027.33-2 chr14 59028502 59029150 + 4.16667 NA Intergenic Intergenic -159841 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 1101 chr14 55270940 55271582 + 4.16667 NA promoter-TSS (NM_017943) promoter-TSS (NM_017943) -160 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 1379 chr2 132546941 132547540 + 4.16667 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 113529 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 1750.5 chr14 39490679 39491482 + 4.16667 NA Intergenic Intergenic -58580 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 1587-2 chr11 57277713 57278467 + 4.16667 NA Intergenic Intergenic -40637 NM_005161 187 Hs.438311 NM_005161 ENSG00000134817 APLNR AGTRL1|APJ|APJR|HG11 apelin receptor protein-coding 1476.67 chr12 40622196 40622846 + 4.16667 NA Intergenic Intergenic -69918 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 1015 chr17 28965327 28965824 + 4.16667 NA intron (NM_001290202, intron 4 of 16) AluJr|SINE|Alu -14057 NM_001290131 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 1460.67 chr11 11787351 11788532 + 4.16667 NA Intergenic Intergenic -4719 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 347-5 chr13 108895165 108895456 + 4.16667 NA intron (NM_015011, intron 14 of 34) intron (NM_015011, intron 14 of 34) 265699 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 810.166 chr14 69475083 69475583 + 4.16667 NA Intergenic Intergenic -9395 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 984-2 chr22 37260848 37261640 + 4.16667 NA Intergenic L2|LINE|L2 -16975 NM_002872 5880 Hs.517601 NM_002872 ENSG00000128340 RAC2 EN-7|Gx|HSPC022|p21-Rac2 Rac family small GTPase 2 protein-coding 1618.67-2 chr6 44313070 44313874 + 4.16667 NA promoter-TSS (NM_020745) promoter-TSS (NM_020745) -125 NM_020745 57505 Hs.158381 NM_020745 ENSG00000124608 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 889.834 chr13 102870522 102870771 + 4.16667 NA intron (NM_000123, intron 12 of 14) intron (NM_000123, intron 12 of 14) -9453 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 782-2 chr8 12866615 12867075 + 4.16667 NA Intergenic Intergenic -55367 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 862.834 chr14 21711575 21712082 + 4.16667 NA Intergenic Intergenic -40811 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 1371 chr3 122679095 122679950 + 4.16667 NA Intergenic Intergenic -1317 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 765.501 chr1 22704227 22704712 + 4.16667 NA Intergenic Intergenic -6369 NM_004442 2048 Hs.380705 NM_004442 ENSG00000133216 EPHB2 CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5 EPH receptor B2 protein-coding 1824.83 chr4 41660968 41662345 + 4.16667 NA intron (NM_001330786, intron 11 of 22) intron (NM_001330786, intron 11 of 22) 48754 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 1873 chr6 53171273 53172626 + 4.16667 NA Intergenic Intergenic -23108 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 772 chr16 7268068 7268542 + 4.16667 NA intron (NM_018723, intron 4 of 15) L2a|LINE|L2 -64540 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 895.667-3 chr5 137751575 137752002 + 4.16667 NA 3' UTR (NM_006805, exon 1 of 1) 3' UTR (NM_006805, exon 1 of 1) 2575 NM_006805 10949 Hs.96996 NM_006805 ENSG00000177733 HNRNPA0 HNRPA0 heterogeneous nuclear ribonucleoprotein A0 protein-coding 589.167 chr1 29033992 29034269 + 4.16667 NA intron (NM_001166007, intron 9 of 17) intron (NM_001166007, intron 9 of 17) 88371 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 1109.67-3 chr17 82236298 82236951 + 4.16667 NA promoter-TSS (NR_106845) promoter-TSS (NR_106845) -44 NR_106845 102465472 NR_106845 ENSG00000284574 MIR6787 hsa-mir-6787 microRNA 6787 ncRNA 1916.33 chr3 190811305 190812638 + 4.16667 NA Intergenic Intergenic 50723 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 1428-2 chr6 71383485 71384306 + 4.16667 NA Intergenic Intergenic -6864 NR_029598 407032 NR_029598 ENSG00000199094 MIR30C2 MIRN30C2|mir-30c-2 microRNA 30c-2 ncRNA 1224.83 chr8 80682892 80683558 + 4.16667 NA intron (NM_001033723, intron 4 of 8) intron (NM_001033723, intron 4 of 8) 191243 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 612.667 chr2 231795608 231795851 + 4.16667 NA intron (NM_001369483, intron 4 of 6) intron (NM_001369483, intron 4 of 6) 9284 NM_001282950 64708 Hs.335061 NM_022730 ENSG00000144524 COPS7B CSN7B|SGN7b COP9 signalosome subunit 7B protein-coding 1153.83 chr2 96407282 96407770 + 4.16667 NA Intergenic Intergenic 71760 NM_015341 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 731.5 chr14 77551420 77551790 + 4.16667 NA intron (NM_004863, intron 9 of 11) intron (NM_004863, intron 9 of 11) -52789 NM_199296 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 1309 chr5 149141014 149142104 + 4.16667 NA promoter-TSS (NM_001301015) promoter-TSS (NM_001301015) 112 NM_001345858 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 956.333-2 chr2 43542503 43542999 + 4.16667 NA intron (NM_001083953, intron 20 of 37) intron (NM_001083953, intron 20 of 37) 53223 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 993.833-2 chr17 75674740 75675325 + 4.16667 NA intron (NR_126037, intron 3 of 8) intron (NR_126037, intron 3 of 8) 7694 NM_013260 29115 Hs.655088 NM_013260 ENSG00000161526 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 1102.5 chr16 28070481 28071225 + 4.16667 NA Intergenic Intergenic -7139 NM_001323901 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 1405.67 chr3 187164621 187165892 + 4.16667 NA Intergenic Intergenic -25760 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 1036.67-3 chr18 6919748 6920307 + 4.16667 NA Intergenic L2|LINE|L2 9842 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 877.833 chr5 60287106 60287623 + 4.16667 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 85299 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1510.67 chr6 24282740 24283881 + 4.16667 NA intron (NM_016356, intron 6 of 9) intron (NM_016356, intron 6 of 9) -73593 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 922.334 chr12 59403413 59403711 + 4.16667 NA Intergenic Intergenic -192467 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 1338.5 chr7 16071407 16072236 + 4.16667 NA Intergenic Intergenic -138665 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 690.5 chr8 22574242 22574623 + 4.16667 NA intron (NM_001018003, intron 9 of 9) intron (NM_001018003, intron 9 of 9) -4309 NM_021630 64236 Hs.632034 NM_021630 ENSG00000120913 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 protein-coding 549.667 chr11 65110238 65110536 + 4.16667 NA intron (NR_073519, intron 7 of 9) intron (NR_073519, intron 7 of 9) -1467 NM_001277233 7108 Hs.31130 NM_003273 ENSG00000149809 TM7SF2 ANG1|C14SR|DHCR14A|NET47 transmembrane 7 superfamily member 2 protein-coding 1218.5 chr14 46651583 46652408 + 4.16667 NA promoter-TSS (NM_080746) promoter-TSS (NM_080746) -214 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 1001.5-3 chr8 142447608 142447942 + 4.16667 NA Intergenic Intergenic -1874 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 1259.83 chr4 38061219 38062236 + 4.16667 NA intron (NM_001253912, intron 14 of 20) intron (NM_001253912, intron 14 of 20) -48454 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 2369.67 chr14 22852777 22854017 + 4.16667 NA Intergenic Intergenic 16812 NM_004995 4323 Hs.2399 NM_004995 ENSG00000157227 MMP14 MMP-14|MMP-X1|MT-MMP|MT-MMP 1|MT1-MMP|MT1MMP|MTMMP1|WNCHRS matrix metallopeptidase 14 protein-coding 826.666 chr10 63872127 63872534 + 4.16667 NA Intergenic Intergenic -350440 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 1238 chr14 80954283 80955091 + 4.16667 NA promoter-TSS (NM_001018036) promoter-TSS (NM_001018036) -934 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 1127.83-4 chr7 27150285 27151223 + 4.16667 NA intron (NR_038831, intron 1 of 2) CpG -2980 NM_024014 3203 Hs.679517 NM_024014 ENSG00000106006 HOXA6 HOX1|HOX1.2|HOX1B homeobox A6 protein-coding 1052.67 chr3 165854350 165854810 + 4.16667 NA Intergenic Intergenic -17157 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 650.667 chr1 167715303 167715672 + 4.16667 NA Intergenic Intergenic -6495 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 1146.67 chr20 34769669 34770496 + 4.16667 NA intron (NM_001242539, intron 2 of 11) AluSc|SINE|Alu 12322 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 1567.5-2 chr15 37134531 37135802 + 4.16667 NA Intergenic Intergenic -33855 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 854.167 chr16 712715 713299 + 4.16667 NA Intergenic L1MB3|LINE|L1 -2111 NM_024042 79006 Hs.533772 NM_024042 ENSG00000103260 METRN C16orf23|c380A1.2 meteorin, glial cell differentiation regulator protein-coding 811.5 chr12 52163701 52164319 + 4.16667 NA Intergenic Intergenic 28004 NM_001081492 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 1001.17 chr2 178795967 178796573 + 4.16667 NA intron (NM_133379, intron 6 of 45) intron (NM_133379, intron 6 of 45) 11153 NM_003319 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 615-2 chr15 65161714 65161919 + 4.16667 NA intron (NM_006660, intron 6 of 13) intron (NM_006660, intron 6 of 13) 23526 NR_133680 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 1857.33 chr15 57860829 57861911 + 4.16667 NA Intergenic Intergenic 152653 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 602.5 chr1 38012397 38013082 + 4.16667 NA promoter-TSS (NM_016037) promoter-TSS (NM_016037) 5 NM_016037 51118 Hs.472038 NM_016037 ENSG00000183520 UTP11 CGI-94|CGI94|UTP11L UTP11 small subunit processome component protein-coding 1420.17 chr5 67156855 67157514 + 4.16667 NA intron (NM_001297651, intron 23 of 25) intron (NM_001297651, intron 23 of 25) 39615 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 764-2 chr12 55973539 55974019 + 4.16667 NA promoter-TSS (NM_001252037) promoter-TSS (NM_001252037) -134 NM_001252036 5869 Hs.157659 NM_002868 ENSG00000111540 RAB5B - RAB5B, member RAS oncogene family protein-coding 1623.33-3 chr8 137846680 137847697 + 4.16667 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 236357 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 1531.67-2 chr8 25458450 25459165 + 4.16667 NA promoter-TSS (NM_001317907) promoter-TSS (NM_001317907) -124 NM_001317906 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 1443.33 chr8 51850291 51851098 + 4.16667 NA intron (NM_001286783, intron 1 of 5) intron (NM_001286783, intron 1 of 5) -41249 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 1338.17 chr12 48164947 48165893 + 4.16667 NA Intergenic L2a|LINE|L2 -7905 NM_001319296 140461 Hs.432699 NM_024095 ENSG00000177981 ASB8 PP14212 ankyrin repeat and SOCS box containing 8 protein-coding 1307.5 chr13 43874476 43875320 + 4.16667 NA 5' UTR (NM_001350618, exon 2 of 5) 5' UTR (NM_001350618, exon 2 of 5) -4280 NM_001128303 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 1547.83-2 chr21 31865610 31866646 + 4.16667 NA Intergenic MIRc|SINE|MIR -6892 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 1145.33 chr14 69242358 69243076 + 4.16667 NA non-coding (NR_034164, exon 11 of 11) non-coding (NR_034164, exon 11 of 11) -17441 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 1150.67 chr12 17991875 17992685 + 4.16667 NA Intergenic Intergenic 97913 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 578.5 chr11 73142324 73142695 + 4.16667 NA promoter-TSS (NM_014824) promoter-TSS (NM_014824) -191 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 532.5-4 chr9 113591770 113592197 + 4.16667 NA intron (NM_001282922, intron 4 of 7) intron (NM_001282922, intron 4 of 7) -1937 NM_144489 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 1117.33 chr6 8219333 8219961 + 4.16667 NA Intergenic Intergenic -117052 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 603.667 chr20 1466845 1467237 + 4.16667 NA non-coding (NR_038164, exon 1 of 8) non-coding (NR_038164, exon 1 of 8) 651 NR_038164 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 729.501-3 chr20 818777 819216 + 4.16667 NA Intergenic AluY|SINE|Alu -14719 NM_001289145 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 965.833-2 chr16 81403278 81403887 + 4.16667 NA Intergenic Intergenic 18564 NR_039871 100616150 NR_039871 ENSG00000284473 MIR4720 - microRNA 4720 ncRNA 805.834 chr15 42926646 42927164 + 4.16667 NA Intergenic Intergenic -6127 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 665 chr20 8790416 8791001 + 4.16667 NA intron (NM_015192, intron 31 of 31) intron (NM_015192, intron 31 of 31) -40477 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 996.001 chr11 26753602 26754092 + 4.16667 NA Intergenic Intergenic -31787 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 1445.67-2 chr7 122528665 122529442 + 4.16667 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 170064 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 1092.5-3 chr5 64074503 64075100 + 4.16667 NA Intergenic Intergenic -91042 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 1044 chr2 236352847 236353358 + 4.16667 NA intron (NR_073043, intron 15 of 19) L1M5|LINE|L1 -88757 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 664.333-3 chr12 120971954 120972280 + 4.16667 NA non-coding (NR_024345, exon 1 of 1) non-coding (NR_024345, exon 1 of 1) 175 NR_024345 283460 Hs.612351 NR_024345 ENSG00000241388 HNF1A-AS1 C12orf27|HAS1|NCRNA00262 HNF1A antisense RNA 1 ncRNA 857-2 chr4 185134348 185134603 + 4.16667 NA Intergenic Intergenic -8791 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 874.333-2 chr5 118611406 118611947 + 4.16667 NA intron (NR_104998, intron 3 of 4) intron (NR_104998, intron 3 of 4) 15488 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 1015.67-2 chr10 124403265 124404108 + 4.16667 NA intron (NM_001322969, intron 7 of 10) intron (NM_001322969, intron 7 of 10) 15237 NM_001322971 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 1604.67 chr12 55188913 55189571 + 4.16667 NA Intergenic Intergenic -31783 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 987.167-2 chr18 8389568 8390243 + 4.16667 NA intron (NM_002845, intron 29 of 30) intron (NM_002845, intron 29 of 30) -22871 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 1157 chr10 127694510 127695236 + 4.16667 NA Intergenic LTR50|LTR|ERVL -42312 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 2000.17 chr11 2151562 2152382 + 4.16667 NA intron (NR_003512, intron 2 of 6) Charlie16a|DNA|hAT-Charlie -2369 NM_001007139 3481 Hs.272259 NM_000612 ENSG00000167244 IGF2 C11orf43|GRDF|IGF-II|PP9974 insulin like growth factor 2 protein-coding 1410.67 chr3 86773687 86774500 + 4.16667 NA Intergenic Intergenic 217056 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 895.5-2 chr9 21813793 21814079 + 4.16667 NA intron (NM_002451, intron 1 of 7) intron (NM_002451, intron 1 of 7) 11300 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 1984.83 chr22 45978497 45979455 + 4.16667 NA Intergenic CpG-19213 -1814 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 1061 chr14 64294557 64295256 + 4.16667 NA promoter-TSS (NM_001040275) promoter-TSS (NM_001040275) -496 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 1465.67-2 chr9 69919371 69920236 + 4.16667 NA Intergenic Intergenic 98986 NR_131757 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 523.5-4 chr8 138727488 138727890 + 4.16667 NA intron (NM_152888, intron 23 of 64) intron (NM_152888, intron 23 of 64) 186352 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 1382.5 chr12 5988309 5989348 + 4.16667 NA intron (NM_000552, intron 38 of 51) intron (NM_000552, intron 38 of 51) -42596 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 835.167-2 chr4 124322176 124322812 + 4.16667 NA Intergenic Intergenic 235940 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 847.834 chr11 57493393 57493801 + 4.16667 NA intron (NM_001198810, intron 8 of 14) intron (NM_001198810, intron 8 of 14) 21312 NM_001198810 8501 Hs.591952 NM_003627 ENSG00000149150 SLC43A1 LAT3|PB39|POV1|R00504 solute carrier family 43 member 1 protein-coding 791.001 chr12 47779287 47779977 + 4.16667 NA intron (NM_017842, intron 2 of 2) intron (NM_017842, intron 2 of 2) 6394 NM_017842 55652 Hs.438867 NM_017842 ENSG00000211584 SLC48A1 HRG-1|HRG1|hHRG-1 solute carrier family 48 member 1 protein-coding 1438 chr2 25700010 25700751 + 4.16667 NA Intergenic Intergenic -26706 NM_001256304 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 645.5-4 chr6 125769787 125770315 + 4.16667 NA Intergenic Intergenic -11064 NM_001199620 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 1246.17-2 chr11 110376778 110377360 + 4.16667 NA intron (NR_135100, intron 2 of 3) MER57B2|LTR|ERV1 21955 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 1644.33 chr2 222938630 222939790 + 4.16667 NA intron (NM_004457, intron 16 of 16) L1MB2|LINE|L1 78174 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 1020.67 chr3 125437775 125438576 + 4.16667 NA Intergenic MIRb|SINE|MIR -62821 NM_001348436 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 905.501 chr1 167687887 167688572 + 4.16667 NA intron (NM_052862, intron 3 of 6) intron (NM_052862, intron 3 of 6) -33753 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 804.334-2 chr16 66873067 66873521 + 4.16667 NA Intergenic CpG -7221 NM_001329931 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 1174.83-2 chr5 147578385 147579038 + 4.16667 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 18717 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 535.167 chr1 177185031 177185607 + 4.16667 NA intron (NM_021165, intron 1 of 7) MER103C|DNA|hAT-Charlie 14361 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 1041.5 chr2 191052179 191052937 + 4.16667 NA intron (NM_003151, intron 14 of 23) intron (NM_003151, intron 14 of 23) 31032 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 891.667 chr10 82969426 82970035 + 4.16667 NA intron (NR_163253, intron 8 of 10) intron (NR_163253, intron 8 of 10) 707359 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1262.83 chr5 32489027 32489848 + 4.16667 NA Intergenic AluSx|SINE|Alu -44697 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 1335.17 chr17 45135167 45136121 + 4.16667 NA promoter-TSS (NM_001135705) promoter-TSS (NM_001135705) -43 NM_001135707 79777 Hs.110298 NM_024722 ENSG00000181513 ACBD4 HMFT0700 acyl-CoA binding domain containing 4 protein-coding 1984.17 chr1 212034904 212035804 + 4.16667 NA promoter-TSS (NM_016448) promoter-TSS (NM_016448) -199 NM_001286229 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 1065.67-3 chr5 64229128 64229755 + 4.16667 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 63598 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 950.5-4 chr7 23546888 23547537 + 4.16667 NA Intergenic Intergenic -15171 NM_001282758 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 2013 chr11 12043803 12044995 + 4.16667 NA intron (NR_135109, intron 1 of 1) intron (NR_135109, intron 1 of 1) 13524 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 864.833 chr1 24415355 24416112 + 4.16667 NA promoter-TSS (NM_001199012) promoter-TSS (NM_001199012) -17 NM_001322863 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 1015.67 chr10 70549655 70550284 + 4.16667 NA intron (NM_014431, intron 18 of 19) intron (NM_014431, intron 18 of 19) 52772 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 932 chr22 26398608 26399250 + 4.16667 NA Intergenic Intergenic -30331 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 1080-3 chr16 6334932 6335654 + 4.16667 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 315590 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 1368.5-2 chr17 39634361 39634848 + 4.16667 NA intron (NM_032192, intron 5 of 6) intron (NM_032192, intron 5 of 6) -2476 NM_001165937 10948 Hs.728838 NM_006804 ENSG00000131748 STARD3 CAB1|MLN64|es64 StAR related lipid transfer domain containing 3 protein-coding 1032.5-2 chr8 40252869 40253387 + 4.16667 NA Intergenic Intergenic 90235 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 910.167 chr4 46274902 46275380 + 4.16667 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 114238 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 372.334 chr10 12656681 12656845 + 4.16667 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) -3566 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 1014.5-2 chr4 186296592 186297233 + 4.16667 NA intron (NR_033900, intron 1 of 3) intron (NR_033900, intron 1 of 3) 30723 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 1527.83 chr4 99055875 99056547 + 4.16667 NA intron (NM_015143, intron 9 of 10) intron (NM_015143, intron 9 of 10) 32577 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 1051.17 chr11 59158621 59159192 + 4.16667 NA Intergenic HERVL40-int|LTR|ERVL -12524 NM_001300727 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 1524.67 chr15 98442055 98443035 + 4.16667 NA intron (NM_182562, intron 5 of 6) intron (NM_182562, intron 5 of 6) -21547 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 564.166-2 chr10 77037271 77037515 + 4.16667 NA intron (NM_001271519, intron 15 of 28) Charlie8|DNA|hAT-Charlie -103438 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 350-22 chr9 96317475 96317657 + 4.16667 NA intron (NR_104627, intron 12 of 12) intron (NR_104627, intron 12 of 12) -15390 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 529.834-2 chr4 42371572 42371835 + 4.16667 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 19565 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 421-4 chr17 10618257 10618577 + 4.16667 NA intron (NR_125367, intron 10 of 10) intron (NR_125367, intron 10 of 10) 38892 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 867 chr5 95664077 95664548 + 4.16667 NA intron (NR_125330, intron 2 of 7) intron (NR_125330, intron 2 of 7) 17433 NM_173362 317671 Hs.399758 NM_173362 ENSG00000175449 RFESD - Rieske Fe-S domain containing protein-coding 1007.67 chr1 199684531 199685118 + 4.16667 NA Intergenic Intergenic -342886 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 1285.67 chr12 124771816 124772568 + 4.16667 NA Intergenic Intergenic 67479 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 1128-3 chr8 108703745 108704273 + 4.16667 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 83585 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 585.333-4 chr3 105040981 105041589 + 4.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -325428 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 716.5 chr14 73472220 73472660 + 4.16667 NA Intergenic AluSx1|SINE|Alu -8798 NR_135251 101928143 Hs.654609 NR_135251 ENSG00000284930 LOC101928143 - uncharacterized LOC101928143 ncRNA 1210 chr10 102393847 102394662 + 4.16667 NA promoter-TSS (NM_001077494) promoter-TSS (NM_001077494) 144 NM_001322935 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 966.667 chr1 155173263 155173673 + 4.16667 NA promoter-TSS (NM_001282378) promoter-TSS (NM_001282378) -140 NM_173852 200185 Hs.516671 NM_173852 ENSG00000163463 KRTCAP2 KCP2 keratinocyte associated protein 2 protein-coding 660.666 chr5 167587896 167588199 + 4.16667 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 14388 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 931 chr10 110138357 110138939 + 4 NA Intergenic Intergenic -68957 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 603.833 chr3 8111119 8111622 + 4 NA Intergenic Intergenic -95063 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 914.666 chr12 118055061 118055712 + 4 NA intron (NM_001278557, intron 1 of 8) intron (NM_001278557, intron 1 of 8) 5825 NM_001278558 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding 934.333 chr1 110312523 110313245 + 4 NA intron (NR_036595, intron 2 of 3) intron (NR_036595, intron 2 of 3) 26287 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 689.5-2 chr10 111076024 111076731 + 4 NA promoter-TSS (NM_000681) promoter-TSS (NM_000681) -652 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 420.167-2 chr1 156090666 156090950 + 4 NA intron (NM_001282625, intron 3 of 12) intron (NM_001282625, intron 3 of 12) 8262 NM_001282625 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 669.167-2 chr3 19348856 19349319 + 4 NA intron (NM_144633, intron 5 of 15) intron (NM_144633, intron 5 of 15) -34156 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 840.167-3 chr8 144566955 144567373 + 4 NA intron (NM_025251, intron 2 of 10) LTR13|LTR|ERVK -38053 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 1096.33 chr3 119241377 119241995 + 4 NA promoter-TSS (NM_212543) promoter-TSS (NM_212543) -808 NM_003778 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 1395.83 chr21 20971255 20972138 + 4 NA Intergenic Intergenic -26713 NM_001352593 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 2401.33 chr3 187678794 187680426 + 4 NA Intergenic Intergenic -9216 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 1693.67 chr5 6820693 6821412 + 4 NA intron (NR_146281, intron 1 of 1) Tigger16a|DNA|TcMar-Tigger 6869 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 1508.67 chr12 122793287 122794214 + 4 NA intron (NR_027918, intron 6 of 12) AluJr4|SINE|Alu 19178 NM_201435 84660 Hs.592008 NM_032573 ENSG00000130783 CCDC62 CT109|ERAP75|TSP-NY coiled-coil domain containing 62 protein-coding 986.166 chr21 29849579 29850177 + 4 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 90118 NM_001330993 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 1103.67-2 chr7 143215013 143215526 + 4 NA intron (NM_001130026, intron 8 of 10) intron (NM_001130026, intron 8 of 10) -6768 NM_176882 259286 Hs.352241 NM_176882 ENSG00000221937 TAS2R40 GPR60|T2R40|T2R58 taste 2 receptor member 40 protein-coding 1738.83 chr1 56709174 56709838 + 4 NA 3' UTR (NM_006252, exon 9 of 9) 3' UTR (NM_006252, exon 9 of 9) -64188 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 1287.33 chr1 26789117 26789914 + 4 NA intron (NM_001202554, intron 1 of 3) intron (NM_001202554, intron 1 of 3) 1327 NM_001202554 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 633.333 chr14 55448250 55448734 + 4 NA Intergenic Intergenic -7947 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 1171.83-4 chr6 46626137 46626905 + 4 NA intron (NM_016593, intron 6 of 11) intron (NM_016593, intron 6 of 11) 26297 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 1119 chr1 119647545 119648709 + 4 NA 5' UTR (NM_001080470, exon 1 of 3) 5' UTR (NM_001080470, exon 1 of 3) 139 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 1490.17 chr5 54419543 54420137 + 4 NA Intergenic Intergenic -35859 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 521.5-3 chr3 165339739 165339996 + 4 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 132907 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 1073.33 chr5 31270189 31270860 + 4 NA intron (NM_001362435, intron 2 of 10) MER119|DNA|hAT-Charlie 76838 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1394-2 chr2 88159754 88160498 + 4 NA Intergenic Intergenic -10169 NM_001244676 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 1845.5 chr11 4636057 4637536 + 4 NA Intergenic Intergenic -2919 NM_001004751 390038 Hs.553728 NM_001004751 ENSG00000197428 OR51D1 OR11-14|OR51D1Q olfactory receptor family 51 subfamily D member 1 protein-coding 1157.5-3 chr8 100143623 100144373 + 4 NA intron (NM_001029860, intron 1 of 4) AluSx1|SINE|Alu 1819 NM_001029860 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 1196.33 chr3 61381617 61382264 + 4 NA Intergenic Intergenic -130479 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 1017.17-2 chr9 77011888 77012471 + 4 NA Intergenic Intergenic -7476 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 748 chr10 98028398 98028788 + 4 NA intron (NM_001206528, intron 1 of 14) intron (NM_001206528, intron 1 of 14) 2028 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 1068.33-3 chr7 82044275 82045160 + 4 NA intron (NM_000722, intron 10 of 38) intron (NM_000722, intron 10 of 38) 35540 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 1313.33 chrX 81195540 81196492 + 4 NA intron (NM_030763, intron 1 of 6) intron (NM_030763, intron 1 of 6) 5897 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 544.666-4 chr3 172490302 172490517 + 4 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 33021 NM_001190942 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL TNF superfamily member 10 protein-coding 1291.67 chr21 21163839 21164334 + 4 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 16924 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 826.001-2 chr5 127564069 127564784 + 4 NA Intergenic Intergenic 46786 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 1201.17-2 chr8 117044411 117045378 + 4 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -90101 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 1245.5 chr1 51191825 51192902 + 4 NA Intergenic MER20|DNA|hAT-Charlie 42733 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 474.333 chr2 95333905 95334179 + 4 NA intron (NM_013434, intron 2 of 8) intron (NM_013434, intron 2 of 8) -12616 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 1630 chr11 20353714 20354598 + 4 NA Intergenic Intergenic -9529 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 1552.83 chr15 63047491 63048709 + 4 NA promoter-TSS (NM_001365782) promoter-TSS (NM_001365782) -389 NM_001365781 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 989.833-2 chrX 49915365 49915845 + 4 NA Intergenic L2|LINE|L2 -6991 NM_001272102 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 928 chr13 108961480 108961768 + 4 NA exon (NM_001198950, exon 18 of 35) exon (NM_001198950, exon 18 of 35) 205679 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 1149.17-2 chr2 158901074 158901732 + 4 NA Intergenic Intergenic -67231 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 830.667 chr11 106721359 106721721 + 4 NA intron (NM_000855, intron 6 of 7) intron (NM_000855, intron 6 of 7) 296936 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 511.667 chr7 37284848 37285316 + 4 NA intron (NM_001206480, intron 4 of 21) LTR41C|LTR|ERVL 68586 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 989.833 chr21 36260333 36260734 + 4 NA intron (NM_005128, intron 23 of 36) intron (NM_005128, intron 23 of 36) -59656 NM_001320446 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 792.167-2 chr4 38782748 38783273 + 4 NA promoter-TSS (NM_030956) promoter-TSS (NM_030956) -20 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 532.167 chr5 145681548 145682002 + 4 NA Intergenic Intergenic 153567 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 1114.5 chr20 57513459 57514466 + 4 NA intron (NR_072975, intron 6 of 10) intron (NR_072975, intron 6 of 10) 10905 NM_001269044 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 856 chr14 55212980 55213489 + 4 NA Intergenic Intergenic -21649 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 1154.17-2 chr2 124026777 124027570 + 4 NA intron (NM_130773, intron 1 of 23) (TTC)n|Simple_repeat|Simple_repeat 1886 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 1190.5 chr1 76330683 76331563 + 4 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 256377 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 813.667 chr3 65732498 65733093 + 4 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -161021 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 855.499 chr13 95494018 95494532 + 4 NA intron (NR_046533, intron 3 of 3) intron (NR_046533, intron 3 of 3) 39635 NR_046533 100874194 Hs.569229 NR_046533 ENSG00000223392 CLDN10-AS1 - CLDN10 antisense RNA 1 ncRNA 776 chr20 49982504 49982841 + 4 NA promoter-TSS (NM_005985) promoter-TSS (NM_005985) -308 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 1250.17-3 chr7 87312162 87313062 + 4 NA Intergenic Intergenic 32880 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 902-2 chr5 52007189 52007896 + 4 NA promoter-TSS (NR_147166) promoter-TSS (NR_147166) -489 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 654.333-2 chr12 16165345 16165679 + 4 NA Intergenic Intergenic 112173 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 942.833 chr12 90944912 90945416 + 4 NA intron (NR_038868, intron 3 of 4) intron (NR_038868, intron 3 of 4) 10012 NR_130711 196477 Hs.128574 NM_152638 ENSG00000197651 CCER1 C12orf12 coiled-coil glutamate rich protein 1 protein-coding 838.167 chr19 10580904 10581411 + 4 NA intron (NM_001300887, intron 6 of 11) intron (NM_001300887, intron 6 of 11) 6155 NM_005498 10053 Hs.18894 NM_005498 ENSG00000129354 AP1M2 AP1-mu2|HSMU1B|MU-1B|MU1B|mu2 adaptor related protein complex 1 subunit mu 2 protein-coding 1551.83-2 chr19 45642675 45643558 + 4 NA TTS (NR_130728) TTS (NR_130728) 613 NM_001352053 24139 Hs.24178 NM_012155 ENSG00000125746 EML2 ELP70|EMAP-2|EMAP2 EMAP like 2 protein-coding 766.5-2 chr2 219736346 219736741 + 4 NA Intergenic Intergenic 108913 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 1846.17 chr4 90292873 90294265 + 4 NA intron (NM_207491, intron 1 of 7) intron (NM_207491, intron 1 of 7) 58538 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1663.5-3 chr7 36967067 36967932 + 4 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 17613 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 763 chr2 170235689 170236396 + 4 NA non-coding (NR_045684, exon 7 of 35) non-coding (NR_045684, exon 7 of 35) 57895 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 1147 chr10 6580356 6580909 + 4 NA promoter-TSS (NM_001323266) promoter-TSS (NM_001323266) 14 NM_001323265 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 1071.5-3 chr4 81351605 81352587 + 4 NA Intergenic Intergenic 119811 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 1213.33 chr12 126069503 126070198 + 4 NA Intergenic LTR55|LTR|ERVL? -26142 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 1071 chr17 42322493 42323219 + 4 NA intron (NM_001369512, intron 20 of 23) intron (NM_001369512, intron 20 of 23) 34800 NM_001288719 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 1033.67-3 chr2 178914117 178914693 + 4 NA intron (NM_001316745, intron 7 of 11) intron (NM_001316745, intron 7 of 11) -106982 NM_133379 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 1439.33 chr13 97359383 97360065 + 4 NA intron (NM_207304, intron 6 of 6) intron (NM_207304, intron 6 of 6) -74445 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 1009.5 chr1 208652045 208652962 + 4 NA Intergenic Intergenic -76185 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 584.334-2 chr12 111813300 111813728 + 4 NA 3' UTR (NM_001204889, exon 12 of 12) 3' UTR (NM_001204889, exon 12 of 12) 13680 NR_106819 102465456 NR_106819 ENSG00000274697 MIR6761 hsa-mir-6761 microRNA 6761 ncRNA 1110 chr8 140637305 140637918 + 4 NA Intergenic Intergenic -1978 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 1199.83-2 chr2 209208305 209208772 + 4 NA Intergenic Intergenic -215509 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 1553.33-2 chr7 38796167 38797329 + 4 NA exon (NM_080631, exon 7 of 28) exon (NM_080631, exon 7 of 28) -109659 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 1204.5-2 chr2 130920014 130920869 + 4 NA intron (NM_001367493, intron 2 of 13) intron (NM_001367493, intron 2 of 13) 83527 NM_001367493 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 941.833-2 chr3 77320529 77321205 + 4 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 222855 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 1018.83 chr11 10307719 10308315 + 4 NA promoter-TSS (NR_103765) promoter-TSS (NR_103765) -296 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 965.833 chr12 116702989 116703628 + 4 NA Intergenic Intergenic 34761 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 1020.5 chr5 157476923 157477600 + 4 NA TTS (NM_033274) TTS (NM_033274) -17161 NR_136205 102724404 Hs.570889 NR_136204 LOC102724404 - uncharacterized LOC102724404 ncRNA 1551.67 chr8 38721087 38722178 + 4 NA Intergenic Intergenic -6554 NR_148053 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 1307.17 chr14 73294994 73295801 + 4 NA intron (NM_001005743, intron 7 of 12) intron (NM_001005743, intron 7 of 12) -49396 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 1163.83-2 chr11 66222332 66223452 + 4 NA intron (NM_018026, intron 10 of 23) intron (NM_018026, intron 10 of 23) -34402 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 830.5 chr17 20226681 20227381 + 4 NA intron (NM_001033553, intron 4 of 14) intron (NM_001033553, intron 4 of 14) 70959 NM_001033554 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 1219.83-2 chr15 101258103 101258713 + 4 NA Intergenic Intergenic -6360 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 1416.33 chr11 18763956 18764678 + 4 NA intron (NM_001278236, intron 3 of 14) L3|LINE|CR1 27481 NM_006906 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 1206.83-2 chr14 68795765 68796508 + 4 NA exon (NM_001244701, exon 1 of 3) exon (NM_001244701, exon 1 of 3) 107 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 511.333-5 chr12 31749262 31749556 + 4 NA Intergenic LTR8B|LTR|ERV1 -20235 NR_103522 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 1263 chr17 72559963 72560804 + 4 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 32421 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 1409.67-3 chr3 114152390 114153108 + 4 NA intron (NM_000796, intron 3 of 6) intron (NM_000796, intron 3 of 6) 26027 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 799-3 chr19 51514698 51515558 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -13328 NM_053003 89858 Hs.249741 NM_033329 ENSG00000254521 SIGLEC12 S2V|SIGLECL1|SLG|Siglec-XII sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding 1091.83 chr6 35205071 35205489 + 4 NA Intergenic Intergenic -8676 NM_001303136 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 1150.33 chr6 149517460 149518047 + 4 NA intron (NM_139126, intron 10 of 12) intron (NM_139126, intron 10 of 12) 28290 NM_139126 85313 Hs.744238 NM_139126 ENSG00000131013 PPIL4 HDCME13P peptidylprolyl isomerase like 4 protein-coding 1050 chr1 206489858 206490291 + 4 NA intron (NM_001193321, intron 15 of 20) MIRb|SINE|MIR 15271 NR_106919 102466202 NR_106919 ENSG00000278465 MIR6769B hsa-mir-6769b microRNA 6769b ncRNA 1076.33 chr8 62983956 62984626 + 4 NA non-coding (NR_027378, exon 1 of 1) non-coding (NR_027378, exon 1 of 1) 6430 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 579.666 chr1 212011684 212012181 + 4 NA intron (NM_015434, intron 4 of 19) intron (NM_015434, intron 4 of 19) -23621 NM_001286229 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 849.168 chr14 61269680 61270137 + 4 NA Intergenic Intergenic 11430 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 786-3 chr5 23840034 23840334 + 4 NA Intergenic Intergenic -111164 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 758.5 chr2 70070846 70071432 + 4 NA intron (NR_033872, intron 4 of 10) intron (NR_033872, intron 4 of 10) 15876 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 2340.67 chr17 57999199 58000657 + 4 NA TTS (NR_034041) TTS (NR_034041) 7318 NM_001078166 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 1563.83-3 chr15 61835448 61836654 + 4 NA Intergenic Intergenic 106133 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 743.167-3 chr15 57537147 57537598 + 4 NA intron (NM_032866, intron 14 of 18) intron (NM_032866, intron 14 of 18) -54532 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 1839.17 chr7 35624435 35625539 + 4 NA Intergenic MIRc|SINE|MIR 70148 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 879.167-2 chr11 65769586 65770210 + 4 NA Intergenic L1MC4|LINE|L1 11078 NM_138368 91056 Hs.591957 NM_138368 ENSG00000254470 AP5B1 AP-5|PP1030 adaptor related protein complex 5 subunit beta 1 protein-coding 1158.83 chr11 77188270 77188899 + 4 NA intron (NM_001127180, intron 27 of 48) intron (NM_001127180, intron 27 of 48) 60338 NM_000260 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 1158.83-2 chr2 68709337 68710108 + 4 NA Intergenic Intergenic -25089 NM_001364820 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 907.667 chr10 89954498 89955005 + 4 NA intron (NR_110655, intron 3 of 3) MIRb|SINE|MIR 2622 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 1565.83 chr10 58177104 58177795 + 4 NA Intergenic Intergenic 90445 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 998.833-4 chr3 185558757 185559499 + 4 NA Intergenic Intergenic -6540 NM_139248 200879 Hs.68864 NM_139248 ENSG00000163898 LIPH AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1 lipase H protein-coding 1217 chr4 175536759 175537373 + 4 NA Intergenic Intergenic 250610 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 1241.5 chr6 75296825 75297418 + 4 NA intron (NM_001300866, intron 6 of 6) intron (NM_001300866, intron 6 of 6) 12107 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 1029.17-2 chr8 33106556 33107389 + 4 NA Intergenic Intergenic 366174 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 1644.67 chr11 59429469 59430670 + 4 NA Intergenic Intergenic -7116 NM_001001954 219981 Hs.553648 NM_001001954 ENSG00000172324 OR5A2 - olfactory receptor family 5 subfamily A member 2 protein-coding 1169.33 chr10 72364222 72364726 + 4 NA Intergenic Intergenic -9555 NM_001365081 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 1210.67-3 chr20 63223103 63223736 + 4 NA Intergenic Intergenic -7288 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 597 chr16 53503441 53503674 + 4 NA promoter-TSS (NM_001012398) promoter-TSS (NM_001012398) -253 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 1344.5 chr3 81910018 81910692 + 4 NA Intergenic Intergenic -75787 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 962.833 chr22 38114137 38114890 + 4 NA intron (NM_001199562, intron 13 of 15) MIR3|SINE|MIR -3829 NM_025045 80115 Hs.474822 NM_025045 ENSG00000128298 BAIAP2L2 - BAI1 associated protein 2 like 2 protein-coding 2533.17 chr19 56837602 56839639 + 4 NA promoter-TSS (NM_001369733) promoter-TSS (NM_001369733) -812 NM_001369733 5178 Hs.731875 NM_006210 ENSG00000198300 PEG3 PW1|ZKSCAN22|ZNF904|ZSCAN24 paternally expressed 3 protein-coding 655.167-3 chrX 53244597 53244830 + 4 NA intron (NM_001111125, intron 8 of 14) L1ME4a|LINE|L1 -19291 NM_001146702 8242 Hs.631768 NM_004187 ENSG00000126012 KDM5C DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169 lysine demethylase 5C protein-coding 799.501 chr12 57725786 57726590 + 4 NA promoter-TSS (NR_027032) promoter-TSS (NR_027032) -52 NR_027032 100130776 Hs.656080 NR_027032 ENSG00000255737 AGAP2-AS1 PUNISHER AGAP2 antisense RNA 1 ncRNA 1101.83 chr1 109532254 109532969 + 4 NA Intergenic Intergenic -7261 NM_031936 83873 Hs.709782 NM_031936 ENSG00000156097 GPR61 BALGR|GPCR3 G protein-coupled receptor 61 protein-coding 754-4 chr6 73180965 73181583 + 4 NA intron (NM_001160132, intron 11 of 13) intron (NM_001160132, intron 11 of 13) -37760 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 1055.83 chr12 54399185 54399721 + 4 NA intron (NM_002205, intron 27 of 29) intron (NM_002205, intron 27 of 29) -8155 NM_001130967 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 1175.67 chr15 58070791 58071854 + 4 NA non-coding (NR_147215, exon 3 of 3) non-coding (NR_147215, exon 3 of 3) -5399 NM_001206897 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 949.167 chr1 58515443 58516019 + 4 NA intron (NM_145243, intron 7 of 8) intron (NM_145243, intron 7 of 8) 30995 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 604.667-2 chr2 100422280 100422746 + 4 NA Intergenic Intergenic -4845 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 978.667-2 chr6 70220615 70221349 + 4 NA intron (NM_001851, intron 37 of 37) L1MA5A|LINE|L1 62215 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 581.667-6 chr8 94059527 94059824 + 4 NA Intergenic MER4D|LTR|ERV1 142728 NM_001161779 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 915.667 chr20 54668492 54668925 + 4 NA Intergenic MER20|DNA|hAT-Charlie 193115 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 999.833 chr1 7667438 7667818 + 4 NA intron (NM_001349608, intron 8 of 21) intron (NM_001349608, intron 8 of 21) -2102 NM_001349614 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 469.333-6 chr5 155686213 155686356 + 4 NA Intergenic HAL1|LINE|L1 -640473 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 1390.5 chr16 5490341 5491690 + 4 NA Intergenic Tigger3d|DNA|TcMar-Tigger 125235 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 831.333 chr6 6315843 6316080 + 4 NA intron (NM_000129, intron 2 of 14) intron (NM_000129, intron 2 of 14) 4730 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 1287-2 chr17 32877274 32877827 + 4 NA promoter-TSS (NM_001303279) promoter-TSS (NM_001303279) -426 NM_015194 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 422-3 chr11 47355119 47355537 + 4 NA exon (NM_003120, exon 5 of 5) exon (NM_003120, exon 5 of 5) -2626 NM_000256 4607 Hs.524906 NM_000256 ENSG00000134571 MYBPC3 CMD1MM|CMH4|FHC|LVNC10|MYBP-C myosin binding protein C, cardiac protein-coding 2124.5 chr6 42547160 42548335 + 4 NA Intergenic Intergenic -16275 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 1006.5-3 chr2 6826246 6826940 + 4 NA Intergenic L2a|LINE|L2 13871 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 1160.67-2 chr11 65329861 65330396 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -3724 NM_001330308 5977 Hs.13495 NM_006268 ENSG00000133884 DPF2 CSS7|REQ|UBID4|ubi-d4 double PHD fingers 2 protein-coding 1310.5 chr1 206864512 206865309 + 4 NA promoter-TSS (NM_018724) promoter-TSS (NM_018724) -899 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 1602.67 chr1 166478986 166480007 + 4 NA intron (NR_146890, intron 1 of 2) intron (NR_146890, intron 1 of 2) 10543 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 935.333 chr3 78659178 78659960 + 4 NA intron (NM_002941, intron 17 of 30) intron (NM_002941, intron 17 of 30) 359890 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 1394.5 chr7 16917966 16919103 + 4 NA Intergenic Intergenic -36551 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 1632.33-2 chr9 22452375 22453335 + 4 NA 3' UTR (NM_022160, exon 2 of 2) 3' UTR (NM_022160, exon 2 of 2) 6031 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 1236.67 chr14 24734862 24735570 + 4 NA Intergenic Intergenic -101026 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 935.834 chr14 30375135 30375717 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -183697 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 1074.67-2 chr5 43305764 43306620 + 4 NA intron (NM_002130, intron 1 of 9) intron (NM_002130, intron 1 of 9) 6989 NM_001324219 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 564-3 chr11 10208717 10209020 + 4 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 85339 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 1549.5 chr14 22614027 22614788 + 4 NA Intergenic Intergenic 16169 NM_022060 63874 Hs.445665 NM_022060 ENSG00000100439 ABHD4 ABH4 abhydrolase domain containing 4 protein-coding 1245.5-2 chr14 21990011 21990652 + 4 NA Intergenic Intergenic -319314 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 677.5-2 chr8 4875561 4875852 + 4 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 119208 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1280.17 chr5 153965029 153965740 + 4 NA Intergenic MIRb|SINE|MIR -66397 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 776.5 chr1 226608896 226609304 + 4 NA 3' UTR (NM_001003665, exon 4 of 4) 3' UTR (NM_001003665, exon 4 of 4) 60336 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 575.167 chr13 30848050 30848271 + 4 NA Intergenic Intergenic -34402 NR_103813 440132 Hs.729493 NR_103813 ENSG00000236094 LINC00545 - long intergenic non-protein coding RNA 545 ncRNA 1198.33-3 chr11 65117451 65118183 + 4 NA promoter-TSS (NM_014205) promoter-TSS (NM_014205) -116 NM_014205 741 Hs.121025 NM_014205 ENSG00000174276 ZNHIT2 C11orf5|FON zinc finger HIT-type containing 2 protein-coding 1376.17 chr19 35352576 35353407 + 4 NA TTS (NM_005303) TTS (NM_005303) 1449 NM_005303 2864 Hs.248127 NM_005303 ENSG00000126266 FFAR1 FFA1R|GPCR40|GPR40 free fatty acid receptor 1 protein-coding 783.333-2 chr8 10590046 10590328 + 4 NA Intergenic Intergenic 64655 NM_001197020 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 948.334 chr12 32060469 32061429 + 4 NA Intergenic Intergenic -45858 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 629.166-2 chr3 148379706 148380037 + 4 NA intron (NR_146712, intron 4 of 4) intron (NR_146712, intron 4 of 4) 98980 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 557.833-3 chr5 39488398 39488844 + 4 NA Intergenic (ATTATAT)n|Simple_repeat|Simple_repeat -31810 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 625.333 chr20 2454884 2455344 + 4 NA Intergenic AluSp|SINE|Alu 7933 NR_003684 100113378 NR_003684 SNORD119 - small nucleolar RNA, C/D box 119 snoRNA 448.667-5 chr17 35747455 35747705 + 4 NA intron (NM_139285, intron 4 of 5) MamRep1879|DNA|hAT-Tip100? 5298 NM_139285 246176 Hs.591194 NM_139285 ENSG00000270765 GAS2L2 CILD41|GAR17 growth arrest specific 2 like 2 protein-coding 754 chr10 60816487 60816762 + 4 NA Intergenic Intergenic 38146 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 894.833-2 chr6 36094986 36095918 + 4 NA intron (NM_001315, intron 8 of 11) intron (NM_001315, intron 8 of 11) -35061 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 715.666 chr1 220046457 220046800 + 4 NA promoter-TSS (NM_004446) promoter-TSS (NM_004446) -123 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 1314.67 chr2 20015441 20016207 + 4 NA Intergenic Intergenic -3156 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 1237.83 chr15 60326781 60327479 + 4 NA Intergenic Intergenic 70856 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 1246.17-3 chr17 39621824 39622404 + 4 NA Intergenic Intergenic -4838 NM_032192 84152 Hs.286192 NM_032192 ENSG00000131771 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding 835.667-2 chr5 147935155 147935785 + 4 NA Intergenic Intergenic -28932 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 677.667 chr10 118720959 118721457 + 4 NA intron (NM_153810, intron 3 of 8) intron (NM_153810, intron 3 of 8) 33762 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 1256.83 chr22 38705337 38706145 + 4 NA promoter-TSS (NM_004286) promoter-TSS (NM_004286) -203 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 924.833 chr4 8468484 8468975 + 4 NA intron (NM_152544, intron 9 of 10) intron (NM_152544, intron 9 of 10) 27932 NM_001350233 152992 Hs.566191 NM_024950 ENSG00000155275 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog protein-coding 1203.83-4 chr5 165209120 165209753 + 4 NA Intergenic Intergenic 739157 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 2173.5-2 chr12 6284800 6286066 + 4 NA Intergenic Charlie25|DNA|hAT-Charlie -25003 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 553.333 chr1 240967011 240967510 + 4 NA intron (NM_001350116, intron 4 of 16) LTR104_Mam|LTR|Gypsy -165012 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 700-3 chr5 923342 923897 + 4 NA Intergenic Intergenic 30735 NM_001166260 9319 Hs.436187 NM_004237 ENSG00000071539 TRIP13 16E1BP|MVA3 thyroid hormone receptor interactor 13 protein-coding 1378-3 chr9 78035157 78035865 + 4 NA Intergenic Intergenic -3700 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 1141.5-2 chr2 74178869 74179283 + 4 NA promoter-TSS (NM_001317110) promoter-TSS (NM_001317110) -197 NM_001317110 55233 Hs.602092 NM_018221 ENSG00000114978 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 470.667 chr10 30241207 30241409 + 4 NA Intergenic Intergenic 29456 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 1005.17-4 chr5 134526870 134527671 + 4 NA intron (NM_015288, intron 1 of 10) CpG-22436 1162 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 1860.5 chr5 108259767 108261539 + 4 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 121445 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 806.166 chr12 96516742 96517203 + 4 NA intron (NM_001306084, intron 5 of 67) intron (NM_001306084, intron 5 of 67) 27395 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 539.666-3 chr11 5380884 5381198 + 4 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) -8336 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 1571.17 chr12 49234708 49235670 + 4 NA intron (NM_001303114, intron 1 of 3) intron (NM_001303114, intron 1 of 3) 7170 NM_001303115 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 512-3 chr2 211658179 211658504 + 4 NA intron (NM_001042599, intron 15 of 26) intron (NM_001042599, intron 15 of 26) 768019 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 1590-2 chr4 67327219 67328231 + 4 NA Intergenic Intergenic 94275 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 813 chr2 30090749 30091124 + 4 NA Intergenic Intergenic -56071 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 968.501 chr20 59598558 59599214 + 4 NA intron (NM_001199505, intron 1 of 12) intron (NM_001199505, intron 1 of 12) -5654 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1494.5-2 chr7 25098320 25099161 + 4 NA Intergenic Intergenic 26621 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 806.333-2 chr8 49301264 49301608 + 4 NA Intergenic Intergenic 210744 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 1015.17-2 chr11 83156024 83157024 + 4 NA promoter-TSS (NM_015885) promoter-TSS (NM_015885) -607 NM_001346414 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 1152.33 chr22 36470154 36470707 + 4 NA intron (NM_012473, intron 3 of 3) intron (NM_012473, intron 3 of 3) 11210 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2|TXN thioredoxin 2 protein-coding 643.334-2 chr10 100508846 100509139 + 4 NA intron (NM_015490, intron 5 of 25) intron (NM_015490, intron 5 of 25) 10869 NM_015490 25956 Hs.18889 NM_015490 ENSG00000075826 SEC31B SEC31B-1|SEC31L2 SEC31 homolog B, COPII coat complex component protein-coding 965.334 chr1 6475502 6475943 + 4 NA intron (NM_001042663, intron 4 of 21) intron (NM_001042663, intron 4 of 21) -9527 NM_001039664 8718 Hs.462529 NM_003790 ENSG00000215788 TNFRSF25 APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR TNF receptor superfamily member 25 protein-coding 1093.33-2 chr7 44921863 44922688 + 4 NA Intergenic Intergenic -36745 NM_033224 5814 Hs.349150 NM_033224 ENSG00000146676 PURB PURBETA purine rich element binding protein B protein-coding 1357.83 chr8 129820032 129820795 + 4 NA Intergenic Intergenic -33789 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 464.167-3 chr19 39970889 39971115 + 4 NA promoter-TSS (NM_006503) promoter-TSS (NM_006503) -3 NM_153001 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome 26S subunit, ATPase 4 protein-coding 588.333 chr2 50536290 50536567 + 4 NA intron (NM_001330093, intron 10 of 22) intron (NM_001330093, intron 10 of 22) 159834 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 713.001 chr8 98470997 98471620 + 4 NA intron (NM_006281, intron 10 of 10) intron (NM_006281, intron 10 of 10) 44350 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 1448.33 chr6 134096886 134097805 + 4 NA Intergenic Intergenic 20335 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 1902.5 chr3 56447038 56447864 + 4 NA intron (NR_132749, intron 1 of 17) intron (NR_132749, intron 1 of 17) 21016 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 1761.84 chr3 196684335 196685414 + 4 NA Intergenic MIRb|SINE|MIR 27376 NM_032898 84984 Hs.282800 NM_032898 ENSG00000174007 CEP19 C3orf34|MOSPGF centrosomal protein 19 protein-coding 879.167 chr1 207052976 207053665 + 4 NA promoter-TSS (NM_001018053) promoter-TSS (NM_001018053) 45 NM_001018053 5208 Hs.282702 NM_006212 ENSG00000123836 PFKFB2 PFK-2/FBPase-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding 1163.5-2 chr17 27805017 27805944 + 4 NA Intergenic Intergenic -4951 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 636.833-2 chr5 73083029 73083367 + 4 NA intron (NM_001146032, intron 23 of 24) U2|snRNA|snRNA -37377 NM_001161342 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 1376.83 chr12 118404569 118405370 + 4 NA intron (NM_022491, intron 10 of 11) intron (NM_022491, intron 10 of 11) 28414 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 1503.83 chr11 19904841 19905882 + 4 NA intron (NM_182964, intron 6 of 37) intron (NM_182964, intron 6 of 37) -117195 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 545.667-2 chr2 138846332 138846629 + 4 NA Intergenic MER91B|DNA|hAT-Tip100 -50844 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 1961.5 chr7 40134197 40135399 + 4 NA promoter-TSS (NM_001193313) promoter-TSS (NM_001193313) -176 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 1072.67-2 chr19 29528242 29528790 + 4 NA intron (NM_001146339, intron 3 of 4) CpG-14189 1932 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 1260.67 chr9 97615360 97616175 + 4 NA intron (NM_139246, intron 4 of 9) intron (NM_139246, intron 4 of 9) 17601 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 1211.33-2 chr5 28014752 28015445 + 4 NA Intergenic LTR9C|LTR|ERV1 272567 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 1459.67 chr2 13006814 13007455 + 4 NA promoter-TSS (NR_038434) promoter-TSS (NR_038434) -121 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 928-2 chr8 10425331 10425913 + 4 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -48943 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 615.333 chr1 51878820 51879167 + 4 NA promoter-TSS (NM_001242361) promoter-TSS (NM_001242361) -56 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 548.5 chr12 56118041 56118274 + 4 NA promoter-TSS (NM_001303124) promoter-TSS (NM_001303124) -109 NM_032786 84872 Hs.632706 NM_032786 ENSG00000135482 ZC3H10 ZC3HDC10 zinc finger CCCH-type containing 10 protein-coding 878-4 chr21 34367308 34368111 + 4 NA intron (NM_172201, intron 1 of 1) intron (NM_172201, intron 1 of 1) 3685 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 890.667 chr10 23703043 23703541 + 4 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 8565 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 1316.5-2 chr9 74776975 74777559 + 4 NA intron (NM_017662, intron 23 of 38) intron (NM_017662, intron 23 of 38) 110080 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 1330.17-4 chr9 129624099 129624938 + 4 NA intron (NM_001286797, intron 1 of 3) intron (NM_001286797, intron 1 of 3) -1635 NM_001286803 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 980.333 chr10 71314044 71314505 + 4 NA Intergenic AluJr|SINE|Alu -4979 NR_033413 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 903.667-2 chr22 30387450 30387881 + 4 NA promoter-TSS (NM_001017981) promoter-TSS (NM_001017981) -254 NM_001017981 200312 Hs.592194 NM_001017981 ENSG00000099999 RNF215 - ring finger protein 215 protein-coding 833.667-2 chr22 41448457 41448886 + 4 NA Intergenic Intergenic -1870 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 1076-3 chr7 5665169 5665977 + 4 NA intron (NR_046834, intron 2 of 2) intron (NR_046834, intron 2 of 2) 14888 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 1285.83-4 chr22 38870016 38870838 + 4 NA intron (NM_014292, intron 4 of 4) intron (NM_014292, intron 4 of 4) 1789 NM_001303494 23466 Hs.592201 NM_014292 ENSG00000183741 CBX6 - chromobox 6 protein-coding 939-2 chr8 99859987 99860595 + 4 NA intron (NM_017890, intron 57 of 61) intron (NM_017890, intron 57 of 61) 33416 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 1472.17-2 chr21 19321979 19322606 + 4 NA Intergenic Intergenic -562480 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 1263.17 chr7 123797619 123798413 + 4 NA Intergenic Intergenic -7305 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 1310.5-3 chr9 86947796 86948860 + 4 NA promoter-TSS (NM_002048) promoter-TSS (NM_002048) -370 NR_049794 100506834 Hs.553987 NR_049794 ENSG00000226237 GAS1RR LncRNA-Hh GAS1 adjacent regulatory RNA ncRNA 573.5 chr18 59084106 59084426 + 4 NA Intergenic Intergenic 48587 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 786.667-2 chr6 25223255 25223955 + 4 NA Intergenic Intergenic 37802 NR_110863 101928663 Hs.561600 NR_110862 LOC101928663 - uncharacterized LOC101928663 ncRNA 944 chr1 201223012 201223496 + 4 NA intron (NM_001164586, intron 20 of 23) intron (NM_001164586, intron 20 of 23) 32429 NM_001164586 91156 Hs.519024 NM_178275 ENSG00000163395 IGFN1 EEF1A2BP1 immunoglobulin like and fibronectin type III domain containing 1 protein-coding 728.5 chr4 72285999 72286665 + 4 NA intron (NM_014243, intron 21 of 21) intron (NM_014243, intron 21 of 21) 247200 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 1514 chr16 81885660 81887059 + 4 NA intron (NM_002661, intron 9 of 32) intron (NM_002661, intron 9 of 32) 107068 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 970.833 chr1 201346574 201347062 + 4 NA Intergenic Intergenic 30862 NM_000364 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 546.167-4 chr6 39377394 39377732 + 4 NA intron (NM_001289020, intron 15 of 21) intron (NM_001289020, intron 15 of 21) 53827 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 794.333 chr1 157156182 157156609 + 4 NA Intergenic Intergenic -17804 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 1193.83 chr11 45339849 45340581 + 4 NA Intergenic Intergenic -15156 NR_120558 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 1217-2 chr6 71349208 71350236 + 4 NA Intergenic Intergenic 27309 NR_029598 407032 NR_029598 ENSG00000199094 MIR30C2 MIRN30C2|mir-30c-2 microRNA 30c-2 ncRNA 1614.33 chr4 146241204 146242166 + 4 NA Intergenic Intergenic 27147 NM_001371071 1197.83 chr6 75526518 75527291 + 4 NA Intergenic Intergenic -33104 NR_110608 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 1030.67 chr2 84314767 84315267 + 4 NA Intergenic Intergenic 24335 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 660-2 chr22 44684851 44685567 + 4 NA intron (NM_001198721, intron 2 of 9) intron (NM_001198721, intron 2 of 9) 8124 NM_001198721 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 743.667 chr17 81097521 81097818 + 4 NA intron (NM_001144888, intron 6 of 13) intron (NM_001144888, intron 6 of 13) 27704 NR_030394 724027 NR_030394 ENSG00000207736 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 1373.17 chr10 120942622 120943697 + 4 NA Intergenic Intergenic 91797 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 1348.33-3 chr20 47272579 47273268 + 4 NA intron (NM_001281774, intron 12 of 23) intron (NM_001281774, intron 12 of 23) -45579 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 754.334 chr10 101602591 101603354 + 4 NA intron (NM_001329743, intron 4 of 5) intron (NM_001329743, intron 4 of 5) -1475 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 645.333 chr17 81239086 81239372 + 4 NA promoter-TSS (NM_001363764) promoter-TSS (NM_001363764) -82 NM_001353402 284184 Hs.356545 NM_001086521 ENSG00000224877 NDUFAF8 C17orf89 NADH:ubiquinone oxidoreductase complex assembly factor 8 protein-coding 822.667 chr11 17230051 17230632 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -22355 NM_001321380 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 759.667 chr3 157572551 157573180 + 4 NA intron (NM_001130002, intron 4 of 4) MIRb|SINE|MIR 29521 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 868.834 chr15 66497847 66498126 + 4 NA promoter-TSS (NM_001329615) promoter-TSS (NM_001329615) -171 NM_001329614 10302 Hs.30174 NM_006049 ENSG00000174446 SNAPC5 SNAP19 small nuclear RNA activating complex polypeptide 5 protein-coding 927 chr1 6554582 6555045 + 4 NA promoter-TSS (NM_138697) promoter-TSS (NM_138697) -300 NM_024654 79707 Hs.59425 NM_024654 ENSG00000162408 NOL9 Grc3|NET6 nucleolar protein 9 protein-coding 1015.33-2 chr19 39532497 39533366 + 4 NA promoter-TSS (NM_152361) promoter-TSS (NM_152361) -79 NM_152361 126272 Hs.135181 NM_152361 ENSG00000176401 EID2B EID-2B|EID-3 EP300 interacting inhibitor of differentiation 2B protein-coding 689 chr10 15897932 15898265 + 4 NA Intergenic Intergenic -37565 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 1218.33 chr11 118689695 118690392 + 4 NA Intergenic Intergenic -10393 NM_007180 11181 Hs.129712 NM_007180 ENSG00000118094 TREH TRE|TREA|TREHD trehalase protein-coding 873.5-3 chr5 24641805 24642438 + 4 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 2857 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 892.668 chr19 45681299 45681958 + 4 NA exon (NM_000164, exon 13 of 14) exon (NM_000164, exon 13 of 14) -6620 NR_037512 100500845 NR_037512 ENSG00000283212 MIR642B mir-642b microRNA 642b ncRNA 1289-2 chr4 112031820 112032356 + 4 NA Intergenic Intergenic -113366 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 2152.17 chr18 3593428 3594906 + 4 NA promoter-TSS (NR_024101) promoter-TSS (NR_024101) 53 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 724.334 chr17 55005539 55005958 + 4 NA intron (NM_178509, intron 7 of 17) intron (NM_178509, intron 7 of 17) -36963 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 1123.67-2 chr5 32707364 32707818 + 4 NA intron (NM_001364458, intron 1 of 7) intron (NM_001364458, intron 1 of 7) -3046 NM_001204376 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 719.333 chr14 26984724 26985277 + 4 NA Intergenic Intergenic 76358 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 908 chr12 74415623 74416360 + 4 NA Intergenic Intergenic -121844 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 812 chr15 66619085 66619585 + 4 NA intron (NR_110372, intron 1 of 4) intron (NR_110372, intron 1 of 4) 37145 NR_110372 102723165 Hs.636703 NR_110372 ENSG00000259471 LINC01169 - long intergenic non-protein coding RNA 1169 ncRNA 424.333-2 chr16 57859304 57859765 + 4 NA Intergenic Intergenic 48897 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 727.333-2 chr2 119290848 119291329 + 4 NA Intergenic Intergenic -42017 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 1070.17 chr16 77971504 77972165 + 4 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -50714 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 1009.17-3 chr18 42298277 42298954 + 4 NA intron (NR_046457, intron 4 of 6) intron (NR_046457, intron 4 of 6) 111947 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 1002-2 chr3 127652105 127652569 + 4 NA intron (NM_015720, intron 2 of 7) intron (NM_015720, intron 2 of 7) -20601 NR_033429 80325 Hs.107812 NM_032548 ENSG00000114626 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP|PP2259 ankyrin repeat and BTB domain containing 1 protein-coding 1101.17 chr18 13159376 13160068 + 4 NA Intergenic Intergenic -59038 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 621.333-3 chr3 47789082 47789627 + 4 NA Intergenic AluY|SINE|Alu -7461 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 1607.5 chr12 52884447 52885204 + 4 NA Intergenic LTR24|LTR|ERV1 14159 NR_162090 113218482 NR_162090 MIR9898 - microRNA 9898 ncRNA 1347.5 chr3 5121582 5122347 + 4 NA promoter-TSS (NM_018184) promoter-TSS (NM_018184) -328 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 1438.17-2 chr4 21768521 21769576 + 4 NA intron (NM_147182, intron 1 of 8) L1M5|LINE|L1 -71353 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 931.667 chr3 56799192 56799883 + 4 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) 2412 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 1413.5 chr1 206664153 206664790 + 4 NA Intergenic Intergenic -20434 NM_004759 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 1831.67 chr6 149431916 149432935 + 4 NA Intergenic Intergenic 32163 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 1206.33 chr12 47637125 47637872 + 4 NA Intergenic L1PB1|LINE|L1 68532 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 938.833-3 chr2 151238867 151239491 + 4 NA Intergenic Intergenic 22684 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 1238.67 chr12 6617482 6618116 + 4 NA Intergenic Intergenic -10420 NM_001363606 1108 Hs.162233 NM_001273 ENSG00000111642 CHD4 CHD-4|Mi-2b|Mi2-BETA|SIHIWES chromodomain helicase DNA binding protein 4 protein-coding 1500.67-2 chr8 107495650 107496385 + 4 NA intron (NM_001199859, intron 1 of 8) LFSINE_Vert|SINE|tRNA 1901 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 588-2 chr19 30030293 30030630 + 4 NA Intergenic L1MB7|LINE|L1 88222 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 790.333 chr13 41222390 41223205 + 4 NA intron (NM_001354074, intron 9 of 9) MLT1E1A|LTR|ERVL-MaLR -28228 NM_032138 84078 Hs.63841 NM_032138 ENSG00000120696 KBTBD7 - kelch repeat and BTB domain containing 7 protein-coding 578.5-2 chr2 79936493 79936869 + 4 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -70098 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 1217.17 chr2 191521601 191522431 + 4 NA Intergenic Intergenic -156056 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 741.833-2 chr15 81274977 81275313 + 4 NA intron (NM_001352686, intron 6 of 18) GA-rich|Low_complexity|Low_complexity -21825 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 342.833-18 chr6 106444881 106445168 + 4 NA intron (NM_001371242, intron 1 of 21) intron (NM_001371242, intron 1 of 21) 12224 NR_134603 105377924 Hs.741855 NR_134603 ENSG00000282408 LOC105377924 - uncharacterized LOC105377924 ncRNA 935.834-2 chr3 196537295 196537722 + 4 NA Intergenic Intergenic -22162 NM_001077657 255798 Hs.631933 NM_001077657 ENSG00000214097 SMCO1 C3orf43 single-pass membrane protein with coiled-coil domains 1 protein-coding 1581 chr12 49966332 49967670 + 4 NA Intergenic Intergenic -4077 NR_110589 101927318 Hs.668233 NR_110589 ENSG00000257588 LOC101927318 - uncharacterized LOC101927318 ncRNA 1173.17 chr1 152189480 152190342 + 4 NA Intergenic Intergenic -30683 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 1034.5-3 chr5 157312123 157312866 + 4 NA intron (NM_001037333, intron 11 of 30) intron (NM_001037333, intron 11 of 30) 33183 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 729.667-3 chr3 37308400 37308659 + 4 NA intron (NM_001172713, intron 11 of 22) Charlie1|DNA|hAT-Charlie -64334 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 515.5 chr14 54773302 54773563 + 4 NA intron (NM_015589, intron 8 of 11) intron (NM_015589, intron 8 of 11) 18599 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 1375.5 chr2 46650452 46651024 + 4 NA Intergenic Intergenic 33523 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 361.166-2 chr19 46704460 46704695 + 4 NA exon (NM_001079880, exon 5 of 19) exon (NM_001079880, exon 5 of 19) 4777 NR_036157 100422913 NR_036157 ENSG00000211513 MIR320E mir-320e microRNA 320e ncRNA 1514.83-2 chr19 50556146 50557204 + 4 NA intron (NM_001080457, intron 1 of 2) L2a|LINE|L2 -5633 NM_001348568 94030 Hs.120873 NM_001080457 ENSG00000131409 LRRC4B HSM|LRIG4|NGL-3 leucine rich repeat containing 4B protein-coding 581.667-4 chr22 19144726 19145071 + 4 NA promoter-TSS (NR_134304) promoter-TSS (NR_134304) -247 NM_022719 8220 Hs.517407 NM_022719 ENSG00000100056 ESS2 DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1 ess-2 splicing factor homolog protein-coding 1213.67 chr3 146218517 146219175 + 4 NA intron (NM_001128306, intron 3 of 6) intron (NM_001128306, intron 3 of 6) 31769 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 1360.33-2 chr9 132268627 132269370 + 4 NA intron (NM_001351527, intron 25 of 25) intron (NM_001351527, intron 25 of 25) 85858 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 918-3 chr21 29499832 29500199 + 4 NA intron (NR_146594, intron 1 of 1) intron (NR_146594, intron 1 of 1) 3968 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 788-2 chr16 3101021 3101860 + 4 NA Intergenic MIRb|SINE|MIR -2146 NM_001365272 84891 Hs.334515 NM_032805 ENSG00000130182 ZSCAN10 ZFP206|ZNF206 zinc finger and SCAN domain containing 10 protein-coding 969 chr2 29923037 29923560 + 4 NA Intergenic Intergenic -1712 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 820.833-2 chr11 15208440 15209198 + 4 NA intron (NM_001042536, intron 7 of 12) intron (NM_001042536, intron 7 of 12) 59717 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 666.667-2 chr17 13017725 13018293 + 4 NA promoter-TSS (NM_018127) promoter-TSS (NM_018127) 18 NM_018127 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 1151.67-2 chr2 74334953 74335468 + 4 NA intron (NM_133478, intron 3 of 30) intron (NM_133478, intron 3 of 30) 8206 NM_133478 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 299.833-9 chr17 29807866 29808002 + 4 NA intron (NM_033389, intron 1 of 14) intron (NM_033389, intron 1 of 14) -46502 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 1115.67 chr17 33725445 33726361 + 4 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -192143 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 710.667-2 chr11 124402265 124402542 + 4 NA Intergenic Intergenic -5052 NM_001005467 390271 Hs.690456 NM_001005467 ENSG00000284609 OR8B3 OR11-311 olfactory receptor family 8 subfamily B member 3 protein-coding 691.667 chr8 105781716 105782046 + 4 NA intron (NR_125796, intron 7 of 7) intron (NR_125796, intron 7 of 7) 278622 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 864.834 chr5 56270407 56271112 + 4 NA Intergenic Intergenic -37429 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 803.5 chr18 44130193 44130521 + 4 NA Intergenic Intergenic 401340 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 1542.33 chr2 64487766 64488659 + 4 NA intron (NR_147011, intron 1 of 2) intron (NR_147011, intron 1 of 2) 1859 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 1308.17-2 chr2 68925265 68925933 + 4 NA Intergenic Intergenic 27294 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 1284.67 chr15 78108061 78108965 + 4 NA intron (NM_001271889, intron 2 of 3) intron (NM_001271889, intron 2 of 3) 15928 NM_001101404 646892 Hs.569511 NM_001101404 ENSG00000183476 SH2D7 - SH2 domain containing 7 protein-coding 1038.67-2 chr15 63751703 63752294 + 4 NA intron (NM_003922, intron 8 of 77) intron (NM_003922, intron 8 of 77) 81950 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 1144 chr8 68853814 68854901 + 4 NA Intergenic Intergenic 249833 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 853.833 chr2 75403475 75404565 + 4 NA Intergenic AluSq|SINE|Alu -120048 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 2041.83 chr10 123994462 123995617 + 4 NA Intergenic MIR3|SINE|MIR 97367 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 570.833-3 chr6 123571968 123572156 + 4 NA intron (NM_001256020, intron 1 of 8) intron (NM_001256020, intron 1 of 8) 64888 NM_001251987 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 477.833 chr17 5592351 5592811 + 4 NA Intergenic Intergenic -8072 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 742.499-4 chr9 129138899 129139867 + 4 NA intron (NM_178001, intron 9 of 10) intron (NM_178001, intron 9 of 10) 27695 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 960.5 chr1 202192232 202192626 + 4 NA Intergenic SVA_D|Retroposon|SVA -1561 NM_001017403 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 1517.5 chr2 57720681 57721437 + 4 NA Intergenic Intergenic -186592 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 992.167 chr18 35386491 35387072 + 4 NA Intergenic LTR41|LTR|ERVL -9444 NM_001322290 252884 Hs.351005 NM_145756 ENSG00000186496 ZNF396 ZSCAN14 zinc finger protein 396 protein-coding 1443.67 chr15 79380957 79381569 + 4 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) -51253 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 1306.83-2 chr4 124333654 124334518 + 4 NA Intergenic Intergenic 224348 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 1145.5-2 chr19 17573744 17574505 + 4 NA intron (NM_024656, intron 6 of 11) intron (NM_024656, intron 6 of 11) 18475 NM_024656 79709 Hs.418795 NM_024656 ENSG00000130309 COLGALT1 BSVD3|ColGalT 1|GLT25D1 collagen beta(1-O)galactosyltransferase 1 protein-coding 535-5 chr9 34664156 34664534 + 4 NA non-coding (NR_135148, exon 3 of 3) non-coding (NR_135148, exon 3 of 3) -1688 NM_006664 10850 Hs.648124 NM_006664 ENSG00000213927 CCL27 ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27 C-C motif chemokine ligand 27 protein-coding 1078.33 chr1 40952443 40953055 + 4 NA Intergenic Intergenic -26947 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 3497.66 chr2 48599784 48601572 + 4 NA intron (NM_172311, intron 3 of 10) intron (NM_172311, intron 3 of 10) -17102 NM_001193487 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 1177.67 chr18 54982736 54983734 + 4 NA Intergenic Intergenic -23774 NM_025214 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 726.999 chr10 98170633 98171025 + 4 NA intron (NM_001256621, intron 3 of 7) intron (NM_001256621, intron 3 of 7) 36172 NM_001351013 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 514.667-3 chr11 44565259 44565499 + 4 NA promoter-TSS (NM_002231) promoter-TSS (NM_002231) -284 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 2129.34 chr11 34359141 34360269 + 4 NA Intergenic Intergenic -1695 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 1132.17-2 chr4 37383562 37384459 + 4 NA intron (NM_001144990, intron 3 of 6) L1PA10|LINE|L1 -69915 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 757.499 chr9 73184003 73184452 + 4 NA Intergenic Intergenic 32362 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 1597.67 chr4 42519692 42520437 + 4 NA intron (NM_001105529, intron 21 of 35) intron (NM_001105529, intron 21 of 35) 122576 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 735 chr17 18889294 18889626 + 4 NA intron (NM_001353099, intron 7 of 11) intron (NM_001353099, intron 7 of 11) 23991 NM_001243940 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 915 chr1 48688312 48688985 + 4 NA intron (NM_001323575, intron 6 of 12) intron (NM_001323575, intron 6 of 12) 88243 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 1015.17-3 chr2 215454056 215454585 + 4 NA intron (NR_110607, intron 1 of 3) intron (NR_110607, intron 1 of 3) 613 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 1803.83-2 chr2 62774479 62775823 + 4 NA intron (NM_001142615, intron 5 of 22) intron (NM_001142615, intron 5 of 22) 68254 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 1221.33 chr15 60507240 60508193 + 4 NA intron (NM_134260, intron 6 of 11) intron (NM_134260, intron 6 of 11) 28538 NR_120342 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 513-2 chr19 55809458 55810217 + 4 NA exon (NM_145007, exon 5 of 12) exon (NM_145007, exon 5 of 12) 22257 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 917.166 chr13 37640428 37640889 + 4 NA intron (NM_001135956, intron 7 of 10) intron (NM_001135956, intron 7 of 10) -41814 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 857.667-2 chr3 120417157 120417731 + 4 NA intron (NM_007085, intron 2 of 10) intron (NM_007085, intron 2 of 10) -21715 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 827.5-2 chr3 132034848 132035508 + 4 NA 5' UTR (NM_130808, exon 1 of 16) 5' UTR (NM_130808, exon 1 of 16) 264 NM_130808 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 1399.5-2 chr17 35763867 35764748 + 4 NA exon (NM_145272, exon 2 of 3) exon (NM_145272, exon 2 of 3) 3420 NM_145272 146853 Hs.127194 NM_145272 ENSG00000270806 C17orf50 - chromosome 17 open reading frame 50 protein-coding 339.5-16 chr8 103795600 103795881 + 4 NA intron (NM_001348497, intron 3 of 22) intron (NM_001348497, intron 3 of 22) -23480 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 808.5 chr8 66428485 66429213 + 4 NA promoter-TSS (NM_015169) promoter-TSS (NM_015169) 128 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 1016.17-2 chr9 25963945 25964594 + 4 NA Intergenic HUERS-P3b-int|LTR|ERV1 -102406 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 1074.33 chr1 156625637 156626567 + 4 NA TTS (NM_021817) TTS (NM_021817) -4174 NR_135113 101928177 Hs.571810 NR_135113 LOC101928177 - uncharacterized LOC101928177 ncRNA 1016.83-5 chr7 85022848 85023827 + 4 NA intron (NM_152754, intron 10 of 16) intron (NM_152754, intron 10 of 16) 98594 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 1358 chr10 118459519 118460366 + 4 NA Intergenic Intergenic 102834 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 1562.83-2 chr8 106192714 106193864 + 4 NA Intergenic Intergenic -76889 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 359.333-3 chr12 120453969 120454140 + 4 NA intron (NM_176818, intron 2 of 3) intron (NM_176818, intron 2 of 3) 7610 NM_176818 283459 Hs.706889 NM_176818 ENSG00000257218 GATC 15E1.2 glutamyl-tRNA amidotransferase subunit C protein-coding 1143.83 chr7 64618737 64619540 + 4 NA TTS (NR_077227) TTS (NR_077227) 36528 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 766.5-3 chr20 63537838 63538371 + 4 NA promoter-TSS (NM_005975) promoter-TSS (NM_005975) -728 NM_005975 5753 Hs.51133 NM_005975 ENSG00000101213 PTK6 BRK protein tyrosine kinase 6 protein-coding 838.834 chr3 88203301 88203984 + 3.83333 NA Intergenic Intergenic 53683 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 729.166 chr1 192610042 192610294 + 3.83333 NA Intergenic Intergenic -25979 NM_002927 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 1611.5-2 chr2 68751294 68752207 + 3.83333 NA intron (NM_001364821, intron 1 of 10) intron (NM_001364821, intron 1 of 10) 16373 NM_001364821 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 579.499 chr1 229227457 229227864 + 3.83333 NA Intergenic Intergenic -43402 NR_073545 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 642.666-2 chr5 26700750 26701007 + 3.83333 NA Intergenic Intergenic 337708 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1039.83-2 chr7 99912907 99913276 + 3.83333 NA intron (NM_033091, intron 1 of 5) intron (NM_033091, intron 1 of 5) 6439 NM_033091 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 839.166 chr7 112898900 112899308 + 3.83333 NA intron (NM_152556, intron 2 of 4) L1M1|LINE|L1 40771 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 1506.5 chr19 46757070 46758483 + 3.83333 NA 3' UTR (NM_024301, exon 4 of 4) 3' UTR (NM_024301, exon 4 of 4) -11326 NM_013403 29888 Hs.631590 NM_013403 ENSG00000090372 STRN4 PPP2R6C|ZIN|zinedin striatin 4 protein-coding 697 chr15 93030590 93030793 + 3.83333 NA Intergenic Intergenic 42465 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 706.833 chr1 9005119 9005577 + 3.83333 NA intron (NM_207420, intron 10 of 11) MER106B|DNA|hAT-Charlie 20997 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 377.333-3 chr2 224650975 224651271 + 3.83333 NA Intergenic Intergenic -65726 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 762.5 chr11 82676659 82676924 + 3.83333 NA Intergenic HUERS-P3b-int|LTR|ERV1 57073 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 585.667 chr10 65682753 65683004 + 3.83333 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 111453 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 1263.67 chr16 71610789 71611635 + 3.83333 NA Intergenic Intergenic -14972 NM_001017967 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 926.166 chr1 235093761 235094073 + 3.83333 NA Intergenic Intergenic -24099 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 646.333-3 chr4 158850786 158851235 + 3.83333 NA intron (NM_001346043, intron 7 of 15) intron (NM_001346043, intron 7 of 15) 45171 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 764.833 chr2 231412259 231412976 + 3.83333 NA Intergenic Intergenic 16907 NM_145236 93010 Hs.299329 NM_145236 ENSG00000156966 B3GNT7 beta3GnT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding 762.667 chr16 57462302 57462717 + 3.83333 NA promoter-TSS (NM_032940) promoter-TSS (NM_032940) -170 NM_032940 5432 Hs.79402 NM_002694 ENSG00000102978 POLR2C RPB3|RPB31|hRPB33|hsRPB3 RNA polymerase II subunit C protein-coding 917.666-2 chr3 3179826 3180352 + 3.83333 NA promoter-TSS (NM_016302) promoter-TSS (NM_016302) -372 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 509.833-4 chr3 72851287 72851692 + 3.83333 NA Intergenic Intergenic -3044 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 1029.17 chr13 76903170 76904186 + 3.83333 NA Intergenic Intergenic -17273 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 382.833-3 chr12 79887052 79887317 + 3.83333 NA intron (NM_001244990, intron 2 of 24) intron (NM_001244990, intron 2 of 24) 26727 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 655.167-2 chr6 37051223 37051818 + 3.83333 NA Intergenic Intergenic 45865 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 1008 chr11 67630176 67630747 + 3.83333 NA promoter-TSS (NM_001243750) promoter-TSS (NM_001243750) -524 NM_181843 254552 Hs.433329 NM_181843 ENSG00000167799 NUDT8 - nudix hydrolase 8 protein-coding 1072-4 chr9 2857463 2858408 + 3.83333 NA Intergenic Intergenic -13840 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 751-2 chr12 105383495 105383849 + 3.83333 NA Intergenic Intergenic 52981 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 966.833 chr4 85147252 85147677 + 3.83333 NA Intergenic Intergenic 179980 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 1072.17 chr20 5528653 5529298 + 3.83333 NA Intergenic Intergenic -18973 NR_109860 101929207 Hs.516871 NR_109860 ENSG00000225640 LINC01729 - long intergenic non-protein coding RNA 1729 ncRNA 797.167-2 chr14 35422028 35422980 + 3.83333 NA Intergenic Intergenic -17750 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 958.833 chr14 55051251 55051770 + 3.83333 NA promoter-TSS (NM_144578) promoter-TSS (NM_144578) -137 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 1584.83 chr9 84260899 84261743 + 3.83333 NA Intergenic Intergenic 79437 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 643.666 chr1 207499434 207499751 + 3.83333 NA intron (NM_000573, intron 1 of 38) L1MCa|LINE|L1 3435 NM_000573 1378 Hs.334019 NM_000573 ENSG00000203710 CR1 C3BR|C4BR|CD35|KN complement C3b/C4b receptor 1 (Knops blood group) protein-coding 1061.5 chr17 17860092 17860622 + 3.83333 NA intron (NM_001350332, intron 12 of 15) intron (NM_001350332, intron 12 of 15) -23346 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP1|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 941.666 chr11 123554635 123555343 + 3.83333 NA intron (NM_020716, intron 1 of 19) LTR41C|LTR|ERVL -5273 NM_001286564 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 1548.5 chr2 22355574 22356443 + 3.83333 NA Intergenic Intergenic -180471 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 684.833-2 chr4 31045531 31045941 + 3.83333 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -125408 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 1341.83 chr7 47088822 47089561 + 3.83333 NA Intergenic Intergenic 375612 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 672.667-3 chr8 64429062 64429316 + 3.83333 NA Intergenic MIRb|SINE|MIR 50040 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 868 chr1 86833367 86834041 + 3.83333 NA Intergenic Intergenic 80422 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 1069-2 chr9 76403056 76403727 + 3.83333 NA Intergenic Intergenic 4792 NR_026890 653162 Hs.655646 NR_026890 RPSAP9 LAMR1P9|RPSA_20_986 ribosomal protein SA pseudogene 9 pseudo 693.334 chr17 49860893 49861313 + 3.83333 NA Intergenic Intergenic -13086 NM_001077505 255061 Hs.652130 NM_170685 ENSG00000176358 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 protein-coding 528.833-2 chr14 64913951 64914520 + 3.83333 NA promoter-TSS (NM_145165) promoter-TSS (NM_145165) -126 NM_001204063 91612 Hs.731537 NM_145165 ENSG00000258289 CHURC1 C14orf52|My015|chch churchill domain containing 1 protein-coding 1212.33-2 chr17 33778872 33779533 + 3.83333 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -245442 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 908.833-2 chr18 74342374 74342979 + 3.83333 NA intron (NM_001174123, intron 10 of 13) intron (NM_001174123, intron 10 of 13) 26837 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 900.834 chr3 50226170 50227079 + 3.83333 NA promoter-TSS (NR_106714) promoter-TSS (NR_106714) -444 NM_001282619 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 1650.67-3 chr6 133568795 133569974 + 3.83333 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -251763 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 1019-2 chr3 183122249 183122955 + 3.83333 NA 3' UTR (NM_014398, exon 6 of 6) 3' UTR (NM_014398, exon 6 of 6) -23015 NM_001363880 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 1378 chr13 90868068 90868874 + 3.83333 NA Intergenic Intergenic 58126 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 1270.17 chr15 40216818 40217719 + 3.83333 NA promoter-TSS (NM_001128628) promoter-TSS (NM_001128628) -160 NM_001128629 106821730 Hs.732375 NM_001128628 ENSG00000259288 BUB1B-PAK6 PAK-5|PAK-6|PAK5|PAK6 BUB1B-PAK6 readthrough protein-coding 1106.83 chr15 74901358 74902209 + 3.83333 NA non-coding (NR_135847, exon 6 of 6) non-coding (NR_135847, exon 6 of 6) 5068 NR_135852 57184 Hs.367690 NM_020447 ENSG00000178761 FAM219B C15orf17 family with sequence similarity 219 member B protein-coding 997-2 chrX 69537915 69538631 + 3.83333 NA Intergenic Intergenic 33038 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 1398.83 chr8 27855261 27855883 + 3.83333 NA Intergenic Intergenic -17755 NM_001278945 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 959.333-2 chr8 100125896 100126368 + 3.83333 NA Intergenic Intergenic 19685 NM_001029860 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 1697.66 chr6 132217835 132218610 + 3.83333 NA Intergenic Intergenic 84244 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 382.833-2 chr1 46747807 46748030 + 3.83333 NA Intergenic Intergenic -28804 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 673.333-2 chr3 37212955 37213398 + 3.83333 NA Intergenic Intergenic -30095 NM_002078 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 1429 chr21 16082219 16082943 + 3.83333 NA intron (NR_111005, intron 1 of 6) (TTTTG)n|Simple_repeat|Simple_repeat 11467 NR_111005 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 1284.83-2 chr3 184543705 184544453 + 3.83333 NA Intergenic Intergenic 12839 NR_046593 100874079 Hs.574899 NR_046593 ENSG00000230215 LINC01840 EIF2B5-AS1 long intergenic non-protein coding RNA 1840 ncRNA 857.834-2 chr16 67562016 67562498 + 3.83333 NA promoter-TSS (NR_158165) promoter-TSS (NR_158165) 52 NR_158165 107984813 Hs.385760 NR_158165 LOC107984813 - uncharacterized LOC107984813 ncRNA 1420.33-3 chr7 19665064 19665839 + 3.83333 NA Intergenic Intergenic 39985 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 610.833 chr1 204565800 204566481 + 3.83333 NA Intergenic Intergenic 49734 NM_002393 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 995.333 chr10 75235841 75236587 + 3.83333 NA promoter-TSS (NM_144589) promoter-TSS (NM_144589) -257 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 964.5-3 chr2 136384819 136385263 + 3.83333 NA Intergenic MamGypsy2-LTR|LTR|Gypsy -266886 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 544.167-5 chr3 20511665 20512211 + 3.83333 NA Intergenic L1PA15-16|LINE|L1 169470 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 788-3 chr8 89071455 89072155 + 3.83333 NA Intergenic L1PA16|LINE|L1 685906 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 606.5-3 chr4 3480443 3481078 + 3.83333 NA intron (NM_173660, intron 4 of 6) intron (NM_173660, intron 4 of 6) -3784 NM_001256896 285489 Hs.122110 NM_173660 ENSG00000175920 DOK7 C4orf25|CMS10|CMS1B|FADS3 docking protein 7 protein-coding 1156.33-3 chr19 53841985 53842736 + 3.83333 NA Intergenic Intergenic -17957 NM_001277129 91662 Hs.631573 NM_033297 ENSG00000142405 NLRP12 CLR19.3|FCAS2|NALP12|PAN6|PYPAF7|RNO|RNO2 NLR family pyrin domain containing 12 protein-coding 1022.67 chr1 87325147 87326397 + 3.83333 NA Intergenic Intergenic -3108 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 845.166-2 chr17 74199347 74200256 + 3.83333 NA Intergenic Intergenic -3877 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 652.667 chr7 120987384 120987845 + 3.83333 NA Intergenic Intergenic -1097 NM_024913 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 1221.33-3 chr4 47668651 47669315 + 3.83333 NA intron (NM_006587, intron 10 of 21) intron (NM_006587, intron 10 of 21) 16314 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 1891.33 chr7 25568214 25569379 + 3.83333 NA Intergenic Intergenic 94344 NR_157825 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 1083.17 chr19 45248819 45249460 + 3.83333 NA Intergenic Intergenic -2132 NM_001199867 57787 Hs.34314 NM_031417 ENSG00000007047 MARK4 MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D microtubule affinity regulating kinase 4 protein-coding 937.5 chr12 53508523 53509020 + 3.83333 NA intron (NR_073163, intron 12 of 12) intron (NR_073163, intron 12 of 12) -1287 NM_001320296 8620 Hs.733076 NM_003717 ENSG00000139574 NPFF FMRFAL neuropeptide FF-amide peptide precursor protein-coding 1536.67-3 chr16 77584178 77584915 + 3.83333 NA Intergenic Intergenic -137946 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 861.333 chr13 62119586 62120152 + 3.83333 NA Intergenic Intergenic -90321 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 334.667-15 chr9 35477314 35477470 + 3.83333 NA intron (NR_003581, intron 14 of 17) intron (NR_003581, intron 14 of 17) -12719 NM_001330740 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 1881 chr12 127381048 127382024 + 3.83333 NA Intergenic Intergenic -41464 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 770.5 chr6 52352430 52352927 + 3.83333 NA Intergenic Intergenic -9473 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 791.833-2 chr19 48445521 48446165 + 3.83333 NA promoter-TSS (NM_031485) promoter-TSS (NM_031485) -140 NM_031485 83743 Hs.400625 NM_031485 ENSG00000105447 GRWD1 CDW4|GRWD|RRB1|WDR28 glutamate rich WD repeat containing 1 protein-coding 1010.67-2 chr2 216666476 216667251 + 3.83333 NA Intergenic Intergenic 7296 NM_001313990 3485 Hs.438102 NM_000597 ENSG00000115457 IGFBP2 IBP2|IGF-BP53 insulin like growth factor binding protein 2 protein-coding 975.5 chr16 6081508 6081852 + 3.83333 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 61977 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 581-2 chr18 32157970 32158557 + 3.83333 NA Intergenic Intergenic -31776 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 790.833-2 chr3 161273419 161273829 + 3.83333 NA Intergenic Intergenic 52334 NM_015938 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 951.668 chrX 93538733 93539160 + 3.83333 NA Intergenic Intergenic 134632 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 859.666-2 chr5 122195576 122196014 + 3.83333 NA Intergenic Intergenic 35619 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 761.5 chr2 237774703 237775154 + 3.83333 NA intron (NM_001137551, intron 11 of 11) intron (NM_001137551, intron 11 of 11) -23817 NM_001080504 375316 Hs.607265 NM_198852 ENSG00000177483 RBM44 - RNA binding motif protein 44 protein-coding 1015.17 chr10 34655387 34656313 + 3.83333 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 159446 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 1204.17-2 chr2 181904202 181904691 + 3.83333 NA intron (NM_006751, intron 8 of 16) intron (NM_006751, intron 8 of 16) 12716 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 630.167-3 chr3 141441181 141441695 + 3.83333 NA intron (NM_001350099, intron 5 of 5) intron (NM_001350099, intron 5 of 5) 39089 NM_001350100 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 722.001 chr1 48530710 48531188 + 3.83333 NA Intergenic Intergenic -58741 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 777 chr1 205591741 205592138 + 3.83333 NA intron (NM_181644, intron 6 of 9) intron (NM_181644, intron 6 of 9) -22634 NR_027086 284578 Hs.537020 NR_027086 MFSD4A-AS1 - MFSD4A antisense RNA 1 ncRNA 864.166 chr1 94045395 94045885 + 3.83333 NA intron (NM_000350, intron 19 of 49) intron (NM_000350, intron 19 of 49) 75508 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 902.667 chr1 193182827 193183189 + 3.83333 NA intron (NM_003783, intron 1 of 1) intron (NM_003783, intron 1 of 1) 3605 NM_003783 8707 Hs.518834 NM_003783 ENSG00000162630 B3GALT2 BETA3GALT2|GLCT2|beta3Gal-T2 beta-1,3-galactosyltransferase 2 protein-coding 307.5-3 chr1 63674543 63674673 + 3.83333 NA Intergenic Intergenic 51392 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 668.833 chr11 14455232 14455452 + 3.83333 NA Intergenic Intergenic 44516 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 1014.5 chr17 68172295 68172880 + 3.83333 NA Intergenic Intergenic -26073 NR_027283 440461 Hs.661522 NR_027283 ARHGAP27P2 - Rho GTPase activating protein 27 pseudogene 2 pseudo 1043.67 chr14 57871678 57872119 + 3.83333 NA Intergenic Intergenic -5806 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 1232.83 chr10 94279793 94280710 + 3.83333 NA non-coding (NR_033969, exon 4 of 4) non-coding (NR_033969, exon 4 of 4) 6819 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 659.001-2 chr4 107736962 107737432 + 3.83333 NA Intergenic PABL_B-int|LTR|ERV1 -16963 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 781.5 chr12 4604567 4605040 + 3.83333 NA promoter-TSS (NM_001282286) promoter-TSS (NM_001282286) -60 NM_001282286 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 840.5 chr16 21656962 21657415 + 3.83333 NA 3' UTR (NM_001288659, exon 5 of 5) 3' UTR (NM_001288659, exon 5 of 5) -4580 NM_005849 10261 Hs.530902 NM_005849 ENSG00000140749 IGSF6 DORA immunoglobulin superfamily member 6 protein-coding 1164.33-2 chr15 79853256 79854265 + 3.83333 NA intron (NR_037654, intron 2 of 2) intron (NR_037654, intron 2 of 2) 43237 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 342.167-2 chr1 48697253 48697650 + 3.83333 NA intron (NR_136623, intron 5 of 12) MIRc|SINE|MIR 79440 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 868.833 chr15 89206686 89207088 + 3.83333 NA Intergenic Intergenic 14692 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 1230.17 chr20 4956150 4956802 + 3.83333 NA intron (NM_005116, intron 2 of 16) intron (NM_005116, intron 2 of 16) 45034 NM_005116 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 1566.5 chr18 54119408 54120070 + 3.83333 NA Intergenic Intergenic 102673 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 1189.67 chr18 5023001 5023962 + 3.83333 NA Intergenic LTR41B|LTR|ERVL -57701 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 923.167 chr17 48884440 48885072 + 3.83333 NA intron (NR_135674, intron 2 of 3) AluSp|SINE|Alu -8031 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5MC1 ATP5A|ATP5G|ATP5G1 ATP synthase membrane subunit c locus 1 protein-coding 1292.5 chr1 170967013 170967503 + 3.83333 NA intron (NM_001163629, intron 7 of 21) intron (NM_001163629, intron 7 of 21) 31724 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 791.167 chr10 110279371 110279818 + 3.83333 NA intron (NM_001008541, intron 3 of 4) intron (NM_001008541, intron 3 of 4) 25326 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 1009-3 chr4 106369307 106369932 + 3.83333 NA Intergenic Intergenic -2184 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 693 chr1 85254903 85255438 + 3.83333 NA intron (NR_024113, intron 3 of 3) intron (NR_024113, intron 3 of 3) 4492 NM_198077 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 568.667-2 chr17 78187033 78187300 + 3.83333 NA promoter-TSS (NM_001010982) promoter-TSS (NM_001010982) 38 NM_001363848 7083 Hs.515122 NM_003258 ENSG00000167900 TK1 TK2 thymidine kinase 1 protein-coding 866.5 chr2 11863406 11864047 + 3.83333 NA Intergenic Intergenic -26740 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 845.5-2 chr7 28078094 28078988 + 3.83333 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -101916 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 821.833 chr1 237851172 237851620 + 3.83333 NA Intergenic Intergenic -10779 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 611.333-4 chr3 123652175 123652610 + 3.83333 NA intron (NM_001321309, intron 23 of 32) intron (NM_001321309, intron 23 of 32) -31844 NM_053032 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 525-3 chr17 49290696 49291032 + 3.83333 NA non-coding (NR_135579, exon 8 of 8) non-coding (NR_135579, exon 8 of 8) -2410 NR_106745 102465137 NR_106745 ENSG00000273500 MIR6129 hsa-mir-6129 microRNA 6129 ncRNA 984.166 chr19 34712828 34713323 + 3.83333 NA Intergenic HUERS-P3-int|LTR|ERV1 -21168 NM_001145665 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 1332.5-2 chr16 76264763 76265860 + 3.83333 NA Intergenic L1MB2|LINE|L1 -12090 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 1117 chr1 244273152 244273902 + 3.83333 NA Intergenic MIRc|SINE|MIR -79108 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 924.5-2 chr14 63799544 63799882 + 3.83333 NA Intergenic (T)n|Simple_repeat|Simple_repeat -53252 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 935.667-2 chrX 57821615 57822298 + 3.83333 NA Intergenic Intergenic 88677 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 1069.17-3 chr7 101542553 101543349 + 3.83333 NA intron (NM_133457, intron 5 of 12) intron (NM_133457, intron 5 of 12) 26055 NR_103747 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 957.834 chr3 139427305 139427758 + 3.83333 NA intron (NR_121609, intron 3 of 4) intron (NR_121609, intron 3 of 4) 37728 NR_121609 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 1168.33 chr8 6830024 6830746 + 3.83333 NA intron (NM_001289973, intron 2 of 7) intron (NM_001289973, intron 2 of 7) 5139 NM_207411 389610 Hs.558840 NM_207411 ENSG00000275591 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK related 5 protein-coding 1282.5-2 chr5 101977608 101978669 + 3.83333 NA Intergenic Intergenic 318146 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 930.167 chr11 26551281 26551779 + 3.83333 NA intron (NM_031418, intron 12 of 26) intron (NM_031418, intron 12 of 26) 20733 NM_001135091 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 1635 chr1 112390414 112391435 + 3.83333 NA Intergenic Intergenic -5290 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 928.167 chr5 114101014 114101598 + 3.83333 NA Intergenic Intergenic -260764 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 600.5-3 chr6 125192031 125192557 + 3.83333 NA intron (NR_149043, intron 1 of 3) intron (NR_149043, intron 1 of 3) 5523 NR_149043 100126584 Hs.640031 NR_149043 LOC100126584 - uncharacterized LOC100126584 ncRNA 780.167-2 chr16 81405609 81406021 + 3.83333 NA Intergenic Intergenic 20797 NR_039871 100616150 NR_039871 ENSG00000284473 MIR4720 - microRNA 4720 ncRNA 1432.67-2 chr8 78851874 78852688 + 3.83333 NA Intergenic Intergenic 14752 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 564-2 chr10 25688794 25688986 + 3.83333 NA intron (NR_108067, intron 2 of 4) (TATAATA)n|Simple_repeat|Simple_repeat 37178 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 1090.33-2 chr9 100437827 100438799 + 3.83333 NA intron (NM_001198806, intron 1 of 2) L1M5|LINE|L1 -3593 NM_001198812 100526694 Hs.598100 NM_001198812 MSANTD3-TMEFF1 C9orf2|C9orf3-TMEFF1|C9orf30-TMEFF1|H7365|TMEFF1|TR-1 MSANTD3-TMEFF1 readthrough protein-coding 1325.83 chr14 51776146 51776725 + 3.83333 NA Intergenic Intergenic 59152 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 945.167 chr17 47970556 47971320 + 3.83333 NA promoter-TSS (NM_001278216) promoter-TSS (NM_001278216) -18 NM_001278216 80279 Hs.20157 NM_025197 ENSG00000108465 CDK5RAP3 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553 CDK5 regulatory subunit associated protein 3 protein-coding 1249.33 chr20 33298976 33299526 + 3.83333 NA intron (NM_033197, intron 7 of 15) intron (NM_033197, intron 7 of 15) 16037 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 1481.83 chr8 56010292 56011183 + 3.83333 NA 3' UTR (NM_001111097, exon 13 of 13) 3' UTR (NM_001111097, exon 13 of 13) 63164 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 651.166-2 chr2 37414312 37414787 + 3.83333 NA Intergenic Intergenic 69919 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 896.334-2 chr2 176638057 176638567 + 3.83333 NA promoter-TSS (NR_040001) promoter-TSS (NR_040001) 558 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 496.5-2 chr2 110101430 110101562 + 3.83333 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) -14973 NR_039941 100616123 NR_039941 ENSG00000264979 MIR4436B1 MIR4436B|hsa-mir-4436b-1 microRNA 4436b-1 ncRNA 1380.67 chr12 32755877 32756638 + 3.83333 NA promoter-TSS (NM_001040436) promoter-TSS (NM_001040436) -360 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 641.333-2 chr12 49357242 49357660 + 3.83333 NA Intergenic L1ME4c|LINE|L1 -9454 NM_023071 65244 Hs.654826 NM_023071 ENSG00000123352 SPATS2 Nbla00526|P59SCR|SCR59|SPATA10 spermatogenesis associated serine rich 2 protein-coding 1030 chr17 27602800 27603544 + 3.83333 NA intron (NM_014238, intron 12 of 20) MER81|DNA|hAT-Blackjack -28016 NM_001330163 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 1106.5-2 chr13 94361984 94362858 + 3.83333 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) 117261 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 731.667 chr1 48109350 48109822 + 3.83333 NA intron (NR_026749, intron 9 of 9) intron (NR_026749, intron 9 of 9) 72842 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 924.166 chr3 58305907 58306553 + 3.83333 NA promoter-TSS (NM_001348712) promoter-TSS (NM_001348712) -15 NM_001348713 109703458 Hs.446320 NM_001348712 ENSG00000255154 HTD2 - hydroxyacyl-thioester dehydratase type 2 protein-coding 1319.17 chr1 184222402 184223371 + 3.83333 NA Intergenic Intergenic -164143 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 2586.83 chr3 195270634 195272077 + 3.83333 NA promoter-TSS (NM_152531) promoter-TSS (NM_152531) -196 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 794 chr2 165203936 165204458 + 3.83333 NA promoter-TSS (NM_001081676) promoter-TSS (NM_001081676) -147 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 1578.33 chr10 32190821 32191428 + 3.83333 NA Intergenic Intergenic -134699 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 976.334 chr2 164599820 164600407 + 3.83333 NA intron (NM_004490, intron 2 of 13) intron (NM_004490, intron 2 of 13) 21369 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 1033.67-2 chr2 85707368 85707977 + 3.83333 NA Intergenic Tigger3a|DNA|TcMar-Tigger 13314 NM_006433 10578 Hs.105806 NM_006433 ENSG00000115523 GNLY D2S69E|LAG-2|LAG2|NKG5|TLA519 granulysin protein-coding 755.5-4 chr8 105660664 105660972 + 3.83333 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 341275 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 801.667-3 chr3 70120113 70120594 + 3.83333 NA Intergenic Intergenic 120609 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 1499.5-2 chr2 7097027 7097853 + 3.83333 NA Intergenic Intergenic -19560 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 1145.5 chr10 25700640 25701201 + 3.83333 NA intron (NR_108067, intron 3 of 4) intron (NR_108067, intron 3 of 4) 49208 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 771.167 chr11 94602810 94603496 + 3.83333 NA intron (NM_152431, intron 12 of 19) intron (NM_152431, intron 12 of 19) 35785 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 938.666 chr14 67426999 67427674 + 3.83333 NA Intergenic Intergenic 14594 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 1253.5-2 chr20 63224404 63224884 + 3.83333 NA Intergenic Intergenic -8513 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 676.166 chr6 79814090 79814290 + 3.83333 NA Intergenic MIRb|SINE|MIR -1944 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 1323.17 chr6 72411906 72412617 + 3.83333 NA Intergenic Intergenic 45515 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 749.167-2 chr11 74702270 74702606 + 3.83333 NA intron (NM_001304390, intron 8 of 10) MamTip2|DNA|hAT-Tip100 8929 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 1089.33-3 chr9 129610653 129611410 + 3.83333 NA intron (NM_001286796, intron 1 of 3) intron (NM_001286796, intron 1 of 3) 2147 NM_001286796 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 1705.17 chr8 32554096 32554926 + 3.83333 NA intron (NM_013960, intron 1 of 12) intron (NM_013960, intron 1 of 12) 6200 NM_001160007 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 1640.5-2 chr2 177164302 177165138 + 3.83333 NA Intergenic Intergenic 47691 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 1106.5-5 chr2 46601373 46602279 + 3.83333 NA intron (NM_173074, intron 4 of 6) intron (NM_173074, intron 4 of 6) 15215 NM_002643 5281 Hs.468415 NM_002643 ENSG00000151665 PIGF - phosphatidylinositol glycan anchor biosynthesis class F protein-coding 1059.17 chr11 83836549 83837425 + 3.83333 NA intron (NM_001142699, intron 16 of 27) L1MDa|LINE|L1 -154562 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 1107.17 chr7 95794853 95795340 + 3.83333 NA intron (NM_004411, intron 1 of 16) intron (NM_004411, intron 1 of 16) 22590 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 358.167 chr1 94335779 94336077 + 3.83333 NA Intergenic Intergenic -82449 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 998.833-3 chr3 128970063 128970783 + 3.83333 NA TTS (NM_001348523) TTS (NM_001348523) 21474 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 926 chr7 29102522 29103235 + 3.83333 NA intron (NM_001371268, intron 3 of 9) L3b|LINE|CR1 -22155 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 1012 chr5 108521608 108522261 + 3.83333 NA Intergenic Intergenic -139836 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 1285.67-2 chr14 71752732 71753549 + 3.83333 NA Intergenic Intergenic 166842 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 1208.5-2 chr4 185039507 185040361 + 3.83333 NA Intergenic Intergenic -11962 NR_147059 101928877 Hs.246506 NR_147059 ENSG00000250754 LINC02436 - long intergenic non-protein coding RNA 2436 ncRNA 732.833-2 chr9 88578404 88578739 + 3.83333 NA Intergenic Intergenic 43393 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 1192.33-2 chr4 89437760 89438459 + 3.83333 NA Intergenic Intergenic -130309 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 911.167-3 chr7 38398521 38399392 + 3.83333 NA intron (NM_139316, intron 16 of 19) intron (NM_139316, intron 16 of 19) 57379 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 1055.17 chr10 21078530 21079428 + 3.83333 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -95011 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 1659-2 chr7 1579097 1580093 + 3.83333 NA intron (NR_027328, intron 3 of 3) intron (NR_027328, intron 3 of 3) 9522 NR_021487 114796 Hs.436146 NR_021487 ENSG00000230487 PSMG3-AS1 - PSMG3 antisense RNA 1 (head to head) ncRNA 1217-3 chr6 136226270 136226899 + 3.83333 NA Intergenic Intergenic 23727 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 567.999 chr4 174222229 174222810 + 3.83333 NA Intergenic Intergenic -2121 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 636.667-3 chr8 107781429 107781995 + 3.83333 NA Intergenic Intergenic -283794 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 1127.83-3 chr5 12023615 12024123 + 3.83333 NA Intergenic Intergenic -119423 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 1236.83 chr16 29815967 29816423 + 3.83333 NA promoter-TSS (NM_024516) promoter-TSS (NM_024516) 43 NM_024516 79447 Hs.702841 NM_024516 ENSG00000280789 PAGR1 C16orf53|GAS|PA1 PAXIP1 associated glutamate rich protein 1 protein-coding 485.834 chr7 31842425 31842658 + 3.83333 NA intron (NM_001191059, intron 10 of 18) L1ME2|LINE|L1 155326 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 769.333 chr8 73665600 73665992 + 3.83333 NA intron (NM_001164383, intron 1 of 9) MER2|DNA|TcMar-Tigger 81044 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 808.667 chr19 42606508 42607007 + 3.83333 NA intron (NR_073180, intron 2 of 2) intron (NR_073180, intron 2 of 2) -11833 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 784.666 chr8 25615563 25615908 + 3.83333 NA Intergenic L1M4c|LINE|L1 156502 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 1157.83 chr1 201895704 201896490 + 3.83333 NA TTS (NM_012134) TTS (NM_012134) 7420 NM_198149 149345 Hs.632471 NM_198149 ENSG00000198892 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 1684.5 chr12 47020994 47021911 + 3.83333 NA Intergenic Intergenic -58151 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 1047.83 chr1 235971898 235972503 + 3.83333 NA Intergenic Intergenic -88487 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 1610 chr3 157532348 157533351 + 3.83333 NA Intergenic Intergenic -10463 NR_024016 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 761 chr10 61896849 61897318 + 3.83333 NA Intergenic Intergenic -4616 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 919.834 chr6 152268411 152268835 + 3.83333 NA intron (NM_182961, intron 99 of 145) intron (NM_182961, intron 99 of 145) -83245 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 1008-3 chr5 88690949 88691597 + 3.83333 NA promoter-TSS (NR_152232) promoter-TSS (NR_152232) -232 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 746.166 chr1 212456101 212456634 + 3.83333 NA Intergenic Intergenic 23447 NM_013349 29937 Hs.461787 NM_013349 ENSG00000117691 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 871.5 chr17 10845191 10845945 + 3.83333 NA Intergenic Intergenic -7481 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 849.5-3 chr5 146130451 146130694 + 3.83333 NA intron (NM_016460, intron 23 of 30) intron (NM_016460, intron 23 of 30) -24995 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 717.333-2 chr9 136787549 136788047 + 3.83333 NA Intergenic HERVK-int|LTR|ERVK -3546 NM_032928 85014 Hs.356744 NM_032928 ENSG00000244187 TMEM141 - transmembrane protein 141 protein-coding 606 chr15 55109007 55109653 + 3.83333 NA Intergenic Intergenic 52583 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 1778.33 chr1 64246171 64247014 + 3.83333 NA TTS (NR_158768) TTS (NR_158768) 42969 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 694.167 chr6 33771265 33771733 + 3.83333 NA 3' UTR (NM_001348709, exon 9 of 9) 3' UTR (NM_001348709, exon 9 of 9) 15443 NM_001143944 221496 Hs.444845 NM_181336 ENSG00000161904 LEMD2 CTRCT42|LEM2|NET25|dJ482C21.1 LEM domain containing 2 protein-coding 945.666-2 chr7 38433774 38434102 + 3.83333 NA intron (NM_001635, intron 12 of 20) intron (NM_001635, intron 12 of 20) 92361 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 1139.33 chr3 113577825 113578296 + 3.83333 NA intron (NR_136285, intron 4 of 20) intron (NR_136285, intron 4 of 20) -16816 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 519.167-3 chr17 40111608 40111953 + 3.83333 NA Intergenic Intergenic -10191 NM_001012241 339287 Hs.532786 NM_001012241 ENSG00000188895 MSL1 MSL-1 MSL complex subunit 1 protein-coding 728.667 chr22 17742544 17743029 + 3.83333 NA intron (NM_001244570, intron 1 of 3) MER5B|DNA|hAT-Charlie 21473 NR_036168 100423025 NR_036168 ENSG00000264757 MIR3198-1 MIR3198|mir-3198-1 microRNA 3198-1 ncRNA 1247.5-2 chr2 45585173 45585792 + 3.83333 NA intron (NM_018079, intron 5 of 20) intron (NM_018079, intron 5 of 20) 25785 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 1247.5-3 chr2 148509392 148510129 + 3.83333 NA intron (NM_018328, intron 13 of 14) intron (NM_018328, intron 13 of 14) -134991 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 1114.5-3 chr6 116535916 116536576 + 3.83333 NA intron (NM_153036, intron 1 of 2) intron (NM_153036, intron 1 of 2) 7203 NM_153036 221301 Hs.350750 NM_153036 ENSG00000164451 CALHM4 C6orf78|FAM26D calcium homeostasis modulator family member 4 protein-coding 1082.83 chr1 108898171 108898717 + 3.83333 NA intron (NM_013296, intron 5 of 14) intron (NM_013296, intron 5 of 14) 21459 NM_001321039 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 967-4 chr2 233053894 233054750 + 3.83333 NA Intergenic Intergenic -6020 NM_001017915 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 1060-2 chr22 45435627 45436126 + 3.83333 NA Intergenic Intergenic 22183 NM_015653 26150 Hs.475110 NM_015653 ENSG00000128408 RIBC2 C22orf11|TRIB RIB43A domain with coiled-coils 2 protein-coding 1279.83 chr17 43994887 43995508 + 3.83333 NA intron (NM_004160, intron 1 of 6) intron (NM_004160, intron 1 of 6) 9272 NM_004160 5697 Hs.169249 NM_004160 ENSG00000131096 PYY PYY-I|PYY1 peptide YY protein-coding 1121.5 chr17 57995304 57996162 + 3.83333 NA Intergenic Intergenic -7479 NM_007146 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 1251.17 chr2 223993297 223994203 + 3.83333 NA intron (NM_001136530, intron 3 of 8) intron (NM_001136530, intron 3 of 8) 36287 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 1282.17 chr1 50873282 50874088 + 3.83333 NA intron (NM_007051, intron 1 of 18) MER66A|LTR|ERV1 86582 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 819.834 chr20 54096502 54097065 + 3.83333 NA Intergenic Intergenic -26018 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 901.166 chr15 77543405 77543789 + 3.83333 NA Intergenic MIR1_Amn|SINE|MIR 18002 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 731.833-2 chr1 230310741 230311082 + 3.83333 NA Intergenic Intergenic 115421 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 821.667-3 chr14 99885330 99885977 + 3.83333 NA intron (NM_004434, intron 4 of 21) intron (NM_004434, intron 4 of 21) -85769 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 718.5-8 chr9 109520608 109520930 + 3.83333 NA Intergenic Intergenic -9224 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 1535.33 chr9 134449248 134450043 + 3.83333 NA Intergenic Intergenic 43085 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 754.167-2 chr18 34322474 34323116 + 3.83333 NA Intergenic Intergenic -99244 NM_001353232 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 1241.17 chr14 21557499 21558174 + 3.83333 NA Intergenic Intergenic 12908 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 722.666 chr1 165075736 165076173 + 3.83333 NA Intergenic MER20|DNA|hAT-Charlie 280287 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 617.167-3 chr7 26853672 26853935 + 3.83333 NA intron (NM_003930, intron 3 of 12) intron (NM_003930, intron 3 of 12) 3920 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 606.499 chr8 91393648 91393941 + 3.83333 NA intron (NM_134266, intron 16 of 18) intron (NM_134266, intron 16 of 18) 144475 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 2752.83 chrX 102950878 102952461 + 3.83333 NA intron (NR_146589, intron 10 of 11) intron (NR_146589, intron 10 of 11) 14397 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 1709.5 chr7 15720757 15721511 + 3.83333 NA Intergenic Intergenic 32756 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 1578.33-2 chr15 50145265 50146196 + 3.83333 NA Intergenic Intergenic -26497 NR_073596 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 1251.5 chr1 203266989 203267752 + 3.83333 NA Intergenic Intergenic -19782 NR_117097 100506775 Hs.443859 NR_117097 ENSG00000231507 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 1685.33 chr11 17979449 17980691 + 3.83333 NA intron (NR_104040, intron 8 of 11) intron (NR_104040, intron 8 of 11) 32977 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 772.833-3 chr8 123693640 123694372 + 3.83333 NA intron (NM_001003954, intron 7 of 11) intron (NM_001003954, intron 7 of 11) -40205 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 413.333-9 chr3 188749138 188749446 + 3.83333 NA intron (NM_001167672, intron 6 of 9) MIR3|SINE|MIR 60511 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 1295.17 chr15 63487047 63487699 + 3.83333 NA Intergenic Intergenic -17138 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 694-2 chr5 171207193 171207516 + 3.83333 NA intron (NM_022897, intron 20 of 27) intron (NM_022897, intron 20 of 27) -101894 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 758.167 chr2 46062856 46063326 + 3.83333 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -234316 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 784.667-2 chr10 97234629 97235429 + 3.83333 NA intron (NM_032900, intron 9 of 11) intron (NM_032900, intron 9 of 11) 35628 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 1314.83 chr10 118241212 118241972 + 3.83333 NA Intergenic Intergenic 100732 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 1049.67-2 chr2 60674478 60675554 + 3.83333 NA Intergenic Intergenic -81252 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 849.167 chr12 126747497 126748108 + 3.83333 NA intron (NR_033878, intron 2 of 4) intron (NR_033878, intron 2 of 4) 10795 NR_038256 100507206 Hs.662298 NR_038256 LINC00943 - long intergenic non-protein coding RNA 943 ncRNA 791.833 chr12 8912809 8913103 + 3.83333 NA Intergenic Intergenic -1553 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 1298 chr7 39896277 39897193 + 3.83333 NA Intergenic AluSx1|SINE|Alu 52684 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 351.833-5 chr18 36942408 36942658 + 3.83333 NA intron (NM_001353918, intron 5 of 9) intron (NM_001353918, intron 5 of 9) -18719 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 886.666 chr2 110811855 110812257 + 3.83333 NA intron (NM_001371254, intron 9 of 18) intron (NM_001371254, intron 9 of 18) 79483 NM_001371254 809.333 chr11 117947063 117947344 + 3.83333 NA Intergenic Intergenic -17750 NM_001206790 84000 Hs.266308 NM_032046 ENSG00000137747 TMPRSS13 MSP|MSPL|MSPS|TMPRSS11 transmembrane serine protease 13 protein-coding 884 chr15 66566983 66567488 + 3.83333 NA Intergenic L2c|LINE|L2 -1237 NM_001278562 197021 Hs.680983 NM_207338 ENSG00000188501 LCTL KLG|KLPH lactase like protein-coding 395 chr1 209354468 209354871 + 3.83333 NA Intergenic ORSL-2a|DNA|hAT-Tip100 -17386 NR_146491 101929476 Hs.568721 NR_146491 LINC01698 - long intergenic non-protein coding RNA 1698 ncRNA 2026.83 chr10 74243948 74244829 + 3.83333 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 67625 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 812.833 chr1 89358435 89358789 + 3.83333 NA Intergenic Intergenic -5265 NM_001320257 163351 Hs.254338 NM_198460 ENSG00000183347 GBP6 - guanylate binding protein family member 6 protein-coding 882.167 chr16 48164612 48165315 + 3.83333 NA TTS (NM_032583) TTS (NM_032583) -18193 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 1157.5-2 chr3 183385659 183386628 + 3.83333 NA intron (NM_015078, intron 2 of 29) intron (NM_015078, intron 2 of 29) 42126 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 769.666 chr21 33641742 33642403 + 3.83333 NA promoter-TSS (NM_145858) promoter-TSS (NM_145858) -331 NM_145858 9946 Hs.352671 NM_145311 ENSG00000205758 CRYZL1 4P11|QOH-1 crystallin zeta like 1 protein-coding 880.833-2 chr3 25856920 25857751 + 3.83333 NA Intergenic Intergenic 16360 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 817.168 chr16 7025370 7026053 + 3.83333 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 251902 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 1079.5 chr2 224778199 224779097 + 3.83333 NA intron (NM_001290263, intron 50 of 55) intron (NM_001290263, intron 50 of 55) 168401 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 542 chr14 43908514 43908717 + 3.83333 NA Intergenic L1M5|LINE|L1 598668 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 506.167-2 chr2 135785084 135785243 + 3.83333 NA TTS (NM_014607) TTS (NM_014607) -35028 NR_045486 100507600 Hs.662020 NR_045486 ENSG00000226806 LOC100507600 - uncharacterized LOC100507600 ncRNA 1902.67 chr2 101011994 101013053 + 3.83333 NA intron (NM_001102426, intron 17 of 19) L1MB8|LINE|L1 10234 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 382.667 chr1 24070794 24071047 + 3.83333 NA intron (NM_152372, intron 25 of 36) MER20B|DNA|hAT-Charlie 41215 NM_152372 127294 Hs.523413 NM_152372 ENSG00000142661 MYOM3 - myomesin 3 protein-coding 1648.83 chr5 62353826 62354570 + 3.83333 NA intron (NM_001098511, intron 6 of 20) intron (NM_001098511, intron 6 of 20) 48036 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 1009.5-3 chr8 69621575 69622235 + 3.83333 NA intron (NR_156414, intron 13 of 20) intron (NR_156414, intron 13 of 20) 29005 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 598.333-3 chr8 42805485 42805752 + 3.83333 NA Intergenic AluSz6|SINE|Alu -36832 NM_001199279 8973 Hs.103128 NM_004198 ENSG00000147434 CHRNA6 CHNRA6 cholinergic receptor nicotinic alpha 6 subunit protein-coding 1472.83 chr2 10408795 10409693 + 3.83333 NA intron (NM_134421, intron 3 of 5) intron (NM_134421, intron 3 of 5) 37605 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 863.5 chr17 61583241 61583971 + 3.83333 NA Intergenic Intergenic 7613 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 433-11 chr5 73454578 73454927 + 3.83333 NA intron (NR_126410, intron 4 of 4) intron (NR_126410, intron 4 of 4) -5975 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 817.333 chr8 86785318 86785707 + 3.83333 NA Intergenic L1M3d|LINE|L1 -41837 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 1258.5 chr1 176880934 176881566 + 3.83333 NA intron (NM_207108, intron 20 of 21) intron (NM_207108, intron 20 of 21) 148195 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 1118 chr8 89848019 89848641 + 3.83333 NA Intergenic Intergenic -53538 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 1147-2 chr7 36986763 36987643 + 3.83333 NA promoter-TSS (NM_130442) promoter-TSS (NM_130442) -937 NM_130442 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 944-2 chr10 116796629 116797349 + 3.83333 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) 30579 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 1266.67 chr11 45102968 45103826 + 3.83333 NA intron (NM_001359633, intron 2 of 7) GA-rich|Low_complexity|Low_complexity 9384 NM_001359633 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 786.167 chr5 141992344 141992871 + 3.83333 NA Intergenic Intergenic 20420 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 1866.67 chr16 28277394 28278377 + 3.83333 NA Intergenic Intergenic -14640 NM_001024401 388228 Hs.97837 NM_001024401 ENSG00000188322 SBK1 SBK SH3 domain binding kinase 1 protein-coding 1223.17-2 chr6 148144660 148145144 + 3.83333 NA Intergenic Intergenic -127426 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 1403.17 chr18 22798690 22800063 + 3.83333 NA Intergenic Intergenic -12539 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 629.5 chr12 119938088 119938650 + 3.83333 NA Intergenic Intergenic -50867 NM_001367886 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 777.833 chr5 112160451 112161121 + 3.83333 NA promoter-TSS (NR_002922) promoter-TSS (NR_002922) 260 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 1591.67 chr6 159042249 159043157 + 3.83333 NA promoter-TSS (NM_001278733) promoter-TSS (NM_001278733) -350 NM_001278733 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 519.833-3 chr2 33134045 33134565 + 3.83333 NA promoter-TSS (NM_001166266) promoter-TSS (NM_001166266) -292 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 1787-2 chr6 151324155 151325504 + 3.83333 NA promoter-TSS (NM_144497) promoter-TSS (NM_144497) -702 NM_144497 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 1826.83 chr2 112599761 112600828 + 3.83333 NA Intergenic Intergenic 15440 NM_001304354 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|CHTM1|MIC14|MIX14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 1342.83 chr4 139651399 139652006 + 3.83333 NA Intergenic Intergenic -14066 NM_001204367 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 1004.5 chr20 31068085 31068946 + 3.83333 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -189149 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 696.667-2 chr2 201232135 201232707 + 3.83333 NA Intergenic LTR41C|LTR|ERVL -1022 NM_001228 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 298.833-6 chr14 64841299 64841508 + 3.83333 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) -18023 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 843.5 chr3 83523391 83523935 + 3.83333 NA Intergenic Intergenic 1345912 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 806.667 chr4 48033403 48034528 + 3.83333 NA intron (NM_207330, intron 4 of 5) intron (NM_207330, intron 4 of 5) 17193 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 751.166 chr11 59550389 59550668 + 3.83333 NA Intergenic Intergenic 35615 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 901.5 chr11 36564349 36565139 + 3.83333 NA Intergenic Intergenic -3269 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 264.667-7 chr18 43596272 43596386 + 3.83333 NA Intergenic Intergenic -318839 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 1072-2 chr10 55501094 55501899 + 3.83333 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -97546 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 1086.17-3 chr7 40052460 40053092 + 3.83333 NA intron (NM_003718, intron 7 of 13) intron (NM_003718, intron 7 of 13) 81846 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 884.833 chr2 25196580 25197043 + 3.83333 NA Intergenic L2a|LINE|L2 -7502 NR_132378 106144568 Hs.580474 NR_132378 ENSG00000230452 LINC01381 DADOT long intergenic non-protein coding RNA 1381 ncRNA 1334 chr4 173013069 173014007 + 3.83333 NA intron (NM_001034845, intron 11 of 12) intron (NM_001034845, intron 11 of 12) -155273 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 748.333 chr17 16363697 16364241 + 3.83333 NA Intergenic Intergenic -10500 NM_181716 201161 Hs.433422 NM_181716 ENSG00000166582 CENPV 3110013H01Rik|CENP-V|PRR6|p30 centromere protein V protein-coding 932.166 chr2 11446598 11447243 + 3.83333 NA intron (NM_001278276, intron 7 of 7) L1M3b|LINE|L1 19241 NM_198256 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 1417 chr8 72287127 72288178 + 3.83333 NA Intergenic Intergenic -36018 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 953.666 chr13 32310248 32310563 + 3.83333 NA intron (NM_001136571, intron 2 of 3) intron (NM_001136571, intron 2 of 3) 1549 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 838.333 chr10 105691714 105692212 + 3.83333 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 128370 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 401.167-4 chr11 18115602 18115892 + 3.83333 NA intron (NR_026576, intron 1 of 2) intron (NR_026576, intron 1 of 2) 385 NR_026576 6290 Hs.454496 NR_026576 ENSG00000166787 SAA3P SAA3 serum amyloid A3, pseudogene pseudo 632.833-4 chr6 10030916 10031340 + 3.83333 NA Intergenic Intergenic -373374 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 632.833-3 chr2 37536351 37536614 + 3.83333 NA Intergenic Intergenic 135717 NM_001270438 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 797 chr17 69567739 69568100 + 3.83333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -26068 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 977.833 chr3 114418814 114419309 + 3.83333 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -34532 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 800.167 chr12 57112297 57112759 + 3.83333 NA Intergenic Intergenic -1166 NM_003153 6778 Hs.524518 NM_003153 ENSG00000166888 STAT6 D12S1644|IL-4-STAT|STAT6B|STAT6C signal transducer and activator of transcription 6 protein-coding 1629 chr5 24633471 24634179 + 3.83333 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 11153 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 640.667-2 chr8 108327472 108328030 + 3.83333 NA Intergenic Intergenic -79034 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 917.5 chr12 50055913 50056365 + 3.83333 NA Intergenic Intergenic -1457 NM_020039 41 Hs.274361 NM_001095 ENSG00000110881 ASIC1 ACCN2|ASIC|BNaC2 acid sensing ion channel subunit 1 protein-coding 1793.67 chr10 14396073 14397256 + 3.83333 NA Intergenic Intergenic -13387 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 607.667 chr3 54428208 54428425 + 3.83333 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 211541 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 697.333 chr4 46937655 46938102 + 3.83333 NA intron (NM_001204267, intron 7 of 7) intron (NM_001204267, intron 7 of 7) -28633 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 327.167-4 chr11 8328914 8329050 + 3.83333 NA Intergenic Intergenic -60195 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 764.501-2 chr7 81447333 81447797 + 3.83333 NA Intergenic Intergenic 114254 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 1136 chr3 137946341 137946999 + 3.83333 NA Intergenic Intergenic -52146 NM_001002026 51208 Hs.655324 NM_016369 ENSG00000066405 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 1014.67-4 chr20 16821449 16821991 + 3.83333 NA Intergenic L1PA16|LINE|L1 73367 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 1426.5 chr1 110460178 110461234 + 3.83333 NA Intergenic Intergenic 9557 NM_032414 84432 Hs.514793 NM_032414 ENSG00000143125 PROK1 EGVEGF|PK1|PRK1 prokineticin 1 protein-coding 1267.5-3 chr7 41711467 41712456 + 3.83333 NA non-coding (NR_027119, exon 3 of 3) non-coding (NR_027119, exon 3 of 3) -8871 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 1839.33 chr17 58576889 58577993 + 3.83333 NA exon (NM_001201457, exon 22 of 33) exon (NM_001201457, exon 22 of 33) -33113 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 1035.33-3 chr9 37913547 37914086 + 3.83333 NA Intergenic Intergenic -9463 NR_024872 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 1321.83 chr3 94249119 94249723 + 3.83333 NA Intergenic Intergenic 186360 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 980.333-2 chr4 54440981 54441477 + 3.83333 NA Intergenic Intergenic 108337 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 1563.67 chr19 42034633 42035375 + 3.83333 NA intron (NM_002088, intron 11 of 18) AluSp|SINE|Alu 30801 NM_002088 2901 Hs.367799 NM_002088 ENSG00000105737 GRIK5 EAA2|GRIK2|GluK5|KA2 glutamate ionotropic receptor kainate type subunit 5 protein-coding 333.166-2 chr13 109685851 109686023 + 3.83333 NA Intergenic Intergenic -42337 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 1392.67 chr20 31412898 31413923 + 3.83333 NA promoter-TSS (NM_001171832) promoter-TSS (NM_001171832) -572 NM_001171832 245934 Hs.272294 NM_001011878 ENSG00000204548 DEFB121 DEFB21|ESC42RELC defensin beta 121 protein-coding 1246.17-4 chr5 146965988 146966661 + 3.83333 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) -46818 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 801.834 chr17 42819706 42820117 + 3.83333 NA intron (NM_001313999, intron 2 of 9) intron (NM_001313999, intron 2 of 9) 3968 NM_001313999 8678 Hs.716464 NM_003766 ENSG00000126581 BECN1 ATG6|VPS30|beclin1 beclin 1 protein-coding 1666.17-2 chr20 22338608 22339648 + 3.83333 NA Intergenic Intergenic -56327 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 465-3 chr19 14529298 14529597 + 3.83333 NA promoter-TSS (NR_030369) promoter-TSS (NR_030369) -96 NR_030369 693224 NR_030369 ENSG00000283822 MIR639 MIRN639|hsa-mir-639 microRNA 639 ncRNA 841.666 chr14 74302017 74302492 + 3.83333 NA intron (NR_148472, intron 1 of 17) L1ME5|LINE|L1 680 NR_148472 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 881.167 chr11 60342717 60343512 + 3.83333 NA Intergenic HUERS-P3-int|LTR|ERV1 8232 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 1531.5 chr3 195894331 195895419 + 3.83333 NA intron (NM_005781, intron 1 of 14) intron (NM_005781, intron 1 of 14) 473 NM_001010938 10188 Hs.518513 NM_005781 ENSG00000061938 TNK2 ACK|ACK-1|ACK1|p21cdc42Hs tyrosine kinase non receptor 2 protein-coding 1439.83 chr1 169347832 169349101 + 3.83333 NA intron (NR_104229, intron 1 of 12) intron (NR_104229, intron 1 of 12) 19331 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 1739.17 chr2 160994313 160995495 + 3.83333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -142051 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 276.333-6 chr21 36939568 36939849 + 3.83333 NA intron (NM_001352515, intron 2 of 10) intron (NM_001352515, intron 2 of 10) 22650 NM_001352518 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 1560 chr19 28242116 28243101 + 3.83333 NA Intergenic MER5B|DNA|hAT-Charlie -364080 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 1243.17 chr1 172719338 172720194 + 3.83333 NA Intergenic (CTTTT)n|Simple_repeat|Simple_repeat 60663 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 1336.33 chr5 58891317 58892282 + 3.83333 NA Intergenic Intergenic 108099 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 444.166-2 chr11 81658690 81658914 + 3.83333 NA Intergenic L1PA17|LINE|L1 232034 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 515-2 chr19 8615546 8616077 + 3.83333 NA Intergenic Intergenic -5096 NM_030957 81794 Hs.657508 NM_030957 ENSG00000142303 ADAMTS10 ADAM-TS10|ADAMTS-10|WMS|WMS1 ADAM metallopeptidase with thrombospondin type 1 motif 10 protein-coding 735.833-4 chr5 141520934 141521657 + 3.83333 NA intron (NM_001314007, intron 27 of 28) intron (NM_001314007, intron 27 of 28) 32054 NM_032407 56097 Hs.368160 NM_018929 ENSG00000240764 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 672.333 chr8 24419201 24419660 + 3.83333 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -21596 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 819.5-2 chr22 23539513 23539844 + 3.83333 NA intron (NR_109832, intron 2 of 3) HERVK-int|LTR|ERVK 1576 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 ncRNA 823.499 chr6 46993637 46994135 + 3.83333 NA Intergenic L2|LINE|L2 -38947 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 1479-2 chr7 29921400 29922289 + 3.83333 NA 3' UTR (NM_001145513, exon 8 of 8) 3' UTR (NM_001145513, exon 8 of 8) 67957 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 544.5-4 chr11 112588081 112588582 + 3.83333 NA Intergenic Intergenic -32529 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 841.5 chr1 16008792 16009394 + 3.83333 NA TTS (NM_178840) TTS (NM_178840) 4857 NM_178840 149563 Hs.29190 NM_178840 ENSG00000183888 SRARP C1orf64|ERRF steroid receptor associated and regulated protein protein-coding 836.333 chr16 10521510 10521968 + 3.83333 NA intron (NR_149081, intron 1 of 1) intron (NR_149081, intron 1 of 1) 6459 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 741 chr7 106792758 106793434 + 3.83333 NA Intergenic Intergenic -72186 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 235.333-7 chr19 38887638 38887712 + 3.83333 NA intron (NR_034146, intron 6 of 13).2 intron (NR_034146, intron 6 of 13).2 6480 NR_034146 22933 Hs.466693 NM_012237 ENSG00000068903 SIRT2 SIR2|SIR2L|SIR2L2 sirtuin 2 protein-coding 1333.33 chr12 40152552 40153345 + 3.83333 NA Intergenic Intergenic -3291 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 314.833 chr1 35715306 35715704 + 3.83333 NA 3' UTR (NM_001348691, exon 2 of 2) 3' UTR (NM_001348691, exon 2 of 2) 1406 NM_001348691 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 370.667-4 chr20 5569023 5569310 + 3.83333 NA intron (NM_019593, intron 12 of 19) intron (NM_019593, intron 12 of 19) 41840 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 1074.67-3 chr9 4762306 4762940 + 3.83333 NA Intergenic AluSc8|SINE|Alu -20580 NM_001199853 50808 Hs.732022 NM_016282 ENSG00000147853 AK3 AK3L1|AK6|AKL3L|AKL3L1|FIX adenylate kinase 3 protein-coding 1324.17 chr1 37454799 37455326 + 3.83333 NA non-coding (NR_038842, exon 3 of 3) non-coding (NR_038842, exon 3 of 3) 19381 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 1728.67 chr12 94101588 94102884 + 3.83333 NA Intergenic CpG -46341 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 695.333 chr10 93080211 93080469 + 3.83333 NA Intergenic Intergenic 6447 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 605.667-4 chr7 6453826 6454212 + 3.83333 NA Intergenic MER77|LTR|ERVL -6007 NM_001142936 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 1038.83 chr5 86968185 86968924 + 3.83333 NA Intergenic Intergenic 146400 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 1279.83-2 chr3 49021561 49022135 + 3.83333 NA promoter-TSS (NM_018114) promoter-TSS (NM_018114) 207 NM_199070 25915 Hs.31387 NM_199069 ENSG00000178057 NDUFAF3 2P1|C3orf60|E3-3|MC1DN18 NADH:ubiquinone oxidoreductase complex assembly factor 3 protein-coding 1095 chr3 136075167 136075976 + 3.83333 NA intron (NM_181897, intron 5 of 12) intron (NM_181897, intron 5 of 12) 52829 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 562.5 chr18 46658233 46658599 + 3.83333 NA Intergenic Intergenic -1383 NM_144612 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 793.334 chr1 67213236 67213601 + 3.83333 NA intron (NM_144701, intron 6 of 10) intron (NM_144701, intron 6 of 10) 46964 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 1129 chr7 3300343 3301138 + 3.83333 NA promoter-TSS (NM_152744) promoter-TSS (NM_152744) -512 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1889.67 chr17 35089414 35090279 + 3.83333 NA promoter-TSS (NR_037713) promoter-TSS (NR_037713) -620 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 663.333-2 chr17 50482569 50482974 + 3.83333 NA intron (NM_018346, intron 5 of 8) MIR|SINE|MIR 3911 NM_018346 55316 Hs.8033 NM_018346 ENSG00000136444 RSAD1 HemW radical S-adenosyl methionine domain containing 1 protein-coding 906.5 chr3 49539610 49540147 + 3.83333 NA Intergenic CpG 14488 NR_038866 100132677 Hs.435651 NR_038866 ENSG00000226913 BSN-DT BSN-AS2 BSN divergent transcript ncRNA 1045.17-2 chr4 1130489 1131015 + 3.83333 NA intron (NR_134676, intron 1 of 2) intron (NR_134676, intron 1 of 2) -7588 NR_033768 100379220 Hs.635208 NR_033768 ENSG00000215367 TMED11P p24a1|p24alpha1 transmembrane p24 trafficking protein 11, pseudogene pseudo 1199 chr9 27726071 27726807 + 3.83333 NA Intergenic Intergenic -152573 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 736.166 chr11 90458729 90459233 + 3.83333 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 96876 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 1399 chr12 119667421 119668282 + 3.83333 NA promoter-TSS (NM_006253) promoter-TSS (NM_006253) -282 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 1204.17-3 chr5 98827100 98827986 + 3.83333 NA Intergenic Intergenic 53880 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 303.667-5 chr14 100246943 100247084 + 3.83333 NA intron (NM_003403, intron 1 of 4) intron (NM_003403, intron 1 of 4) 7869 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 1212.17 chr5 94326465 94327047 + 3.83333 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -215057 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 1049.67 chr17 2352952 2353670 + 3.83333 NA intron (NM_001346700, intron 2 of 22) intron (NM_001346700, intron 2 of 22) 15810 NM_014853 9905 Hs.513861 NM_014853 ENSG00000141258 SGSM2 RUTBC1 small G protein signaling modulator 2 protein-coding 1035.33 chr1 59699409 59699973 + 3.83333 NA TTS (NR_103473) TTS (NR_103473) 33605 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 1665.83-2 chr5 55343954 55344814 + 3.83333 NA intron (NM_015360, intron 8 of 26) intron (NM_015360, intron 8 of 26) 36395 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 1177-3 chr8 126383609 126384589 + 3.83333 NA Intergenic Intergenic 58604 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 1150 chr7 27605225 27606220 + 3.83333 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -10252 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 1578.67 chr17 32783061 32783765 + 3.83333 NA intron (NM_015194, intron 1 of 21) FLAM_A|SINE|Alu 93711 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 1204.67 chr21 20999437 21000139 + 3.83333 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 1379 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 910 chr1 21231723 21232351 + 3.83333 NA intron (NM_001113347, intron 12 of 16) intron (NM_001113347, intron 12 of 16) 47578 NM_001113347 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 925.333-2 chr8 22588981 22589247 + 3.83333 NA intron (NM_198042, intron 5 of 7) intron (NM_198042, intron 5 of 7) 8639 NM_001368120 64236 Hs.632034 NM_021630 ENSG00000120913 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 protein-coding 1111.17 chr10 80699287 80699813 + 3.83333 NA Intergenic Intergenic 49753 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 1186.67 chr12 117366657 117367416 + 3.83333 NA Intergenic Charlie4z|DNA|hAT-Charlie -5234 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 1528.17-2 chrX 43958077 43958722 + 3.83333 NA intron (NR_046631, intron 3 of 5) intron (NR_046631, intron 3 of 5) 8667 NR_046631 100873919 NR_046631 ENSG00000236276 NDP-AS1 - NDP antisense RNA 1 ncRNA 957.334 chr8 8272865 8273607 + 3.83333 NA Intergenic Intergenic 44666 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 688.333-3 chr18 48412348 48412640 + 3.83333 NA promoter-TSS (NM_001371287) promoter-TSS (NM_001371287) 91 NM_001371287 1027 chr15 70811999 70812651 + 3.83333 NA Intergenic Intergenic -40914 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 750.833 chr12 20950001 20950638 + 3.83333 NA intron (NM_001371097, intron 13 of 15) HUERS-P3-int|LTR|ERV1 -65377 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 302.833-5 chr13 106620092 106620220 + 3.83333 NA intron (NR_051977, intron 1 of 3) intron (NR_051977, intron 1 of 3) 2346 NR_051977 283483 Hs.651365 NR_051977 ENSG00000272274 LINC00551 - long intergenic non-protein coding RNA 551 ncRNA 1110.17-2 chr2 39228047 39228725 + 3.83333 NA intron (NM_001009565, intron 1 of 7) intron (NM_001009565, intron 1 of 7) 1202 NR_144520 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 1002.5-2 chr4 47662944 47663562 + 3.83333 NA intron (NM_006587, intron 11 of 21) intron (NM_006587, intron 11 of 21) 10584 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 510-9 chr6 132798961 132799411 + 3.83333 NA promoter-TSS (NM_052831) promoter-TSS (NM_052831) -549 NM_052831 116843 Hs.347144 NM_052831 ENSG00000146409 SLC18B1 C6orf192|dJ55C23.6 solute carrier family 18 member B1 protein-coding 505.833 chr1 24527343 24527618 + 3.83333 NA intron (NM_001251985, intron 1 of 1) intron (NM_001251985, intron 1 of 1) 13166 NM_001251980 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 1095.5 chr2 119407523 119408174 + 3.83333 NA Intergenic Intergenic -24006 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 930.5-3 chr18 62249277 62249920 + 3.83333 NA intron (NR_144409, intron 12 of 31) intron (NR_144409, intron 12 of 31) 62343 NR_144403 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 1084.17-2 chr22 25361972 25362584 + 3.83333 NA 5' UTR (NM_182492, exon 1 of 4) 5' UTR (NM_182492, exon 1 of 4) 279 NM_182492 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 766.667-2 chr3 12892040 12892377 + 3.83333 NA Intergenic Intergenic -6997 NR_136189 105376955 Hs.561179 NR_136189 ENSG00000232746 LINC02022 - long intergenic non-protein coding RNA 2022 ncRNA 1161 chr2 152635580 152636272 + 3.83333 NA intron (NM_052905, intron 21 of 25) AluJo|SINE|Alu 81535 NM_001365599 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 1245.67 chr19 46028676 46029314 + 3.83333 NA Intergenic Intergenic -5942 NM_005091 8993 Hs.137583 NM_005091 ENSG00000008438 PGLYRP1 PGLYRP|PGRP|PGRP-S|PGRPS|TAG7|TNFSF3L peptidoglycan recognition protein 1 protein-coding 1265.17-2 chr2 191690866 191691768 + 3.83333 NA intron (NR_131917, intron 1 of 2) intron (NR_131917, intron 1 of 2) 1136 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 1012.83-2 chr6 49452965 49453794 + 3.83333 NA intron (NM_000255, intron 5 of 12) intron (NM_000255, intron 5 of 12) 9874 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 518.833 chr12 31636586 31637257 + 3.83333 NA Intergenic (TTGG)n|Simple_repeat|Simple_repeat -10239 NM_001135864 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 1402-2 chr17 28719361 28720173 + 3.83333 NA promoter-TSS (NR_000013) promoter-TSS (NR_000013) -218 NM_000984 6147 Hs.419463 NM_000984 ENSG00000198242 RPL23A L23A|MDA20 ribosomal protein L23a protein-coding 945.334 chr5 7816217 7816688 + 3.83333 NA intron (NM_020546, intron 22 of 24) LTR33|LTR|ERVL 34681 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 2085.5 chr15 58227254 58228177 + 3.83333 NA Intergenic Intergenic 89334 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 885.334 chr2 46986926 46987626 + 3.83333 NA intron (NM_001288951, intron 5 of 20) intron (NM_001288951, intron 5 of 20) -45421 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 804.667 chr1 115981169 115981839 + 3.83333 NA intron (NM_018420, intron 1 of 11) intron (NM_018420, intron 1 of 11) -4228 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 750-2 chr8 24414871 24415636 + 3.83333 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -25773 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 430.167 chr1 187265110 187265392 + 3.83333 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 172409 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 1183.5-3 chr14 68816503 68817414 + 3.83333 NA Intergenic Intergenic -20715 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 435.666-6 chr5 38551455 38551865 + 3.83333 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 4986 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 791.166 chr12 114625118 114625705 + 3.83333 NA Intergenic Intergenic 58764 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 504.5-6 chr9 92790704 92791087 + 3.83333 NA Intergenic MER21-int|LTR|ERVL 17192 NR_136301 101929748 Hs.551296 NR_136301 LOC101929748 - uncharacterized LOC101929748 ncRNA 1622.17-2 chr2 225660426 225661610 + 3.83333 NA intron (NM_001371273, intron 7 of 7) intron (NM_001371273, intron 7 of 7) 260132 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 850.666 chr10 62593959 62594421 + 3.83333 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 73742 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 478.167-4 chr13 44969997 44970317 + 3.83333 NA intron (NM_012345, intron 5 of 9) intron (NM_012345, intron 5 of 9) 19314 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 878-2 chr2 68909812 68910230 + 3.66667 NA Intergenic Intergenic -38624 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 833.667-3 chr4 4519063 4519443 + 3.66667 NA intron (NM_001346282, intron 1 of 10) intron (NM_001346282, intron 1 of 10) 22795 NM_001346281 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 955.5 chr14 70086767 70087570 + 3.66667 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -6951 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 1001.33 chr17 64492527 64493152 + 3.66667 NA intron (NM_007215, intron 2 of 7) intron (NM_007215, intron 2 of 7) 4215 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 1328.17-2 chr12 64549005 64549983 + 3.66667 NA Intergenic Intergenic -61001 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 1100.17 chr9 89592853 89593500 + 3.66667 NA Intergenic Intergenic -11836 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 1252.33 chr2 50401984 50402957 + 3.66667 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -54714 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 612-4 chr2 232365721 232365990 + 3.66667 NA Intergenic Intergenic -12896 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|ALPI|IAP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 1116.83 chr5 164504048 164504808 + 3.66667 NA intron (NR_105065, intron 2 of 3) intron (NR_105065, intron 2 of 3) 34149 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 791.666 chr12 25387355 25387871 + 3.66667 NA Intergenic Intergenic -136684 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 641.333 chr10 30534443 30535038 + 3.66667 NA Intergenic Intergenic 95013 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 830.834 chr2 113079626 113080304 + 3.66667 NA Intergenic Intergenic 7647 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 728-3 chr4 27048114 27048767 + 3.66667 NA Intergenic Intergenic -169039 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 483.5-2 chr1 145977423 145977907 + 3.66667 NA intron (NM_032305, intron 5 of 7) intron (NM_032305, intron 5 of 7) 12975 NM_032305 84265 Hs.591456 NM_032305 ENSG00000121851 POLR3GL RPC32HOM|flj32422 RNA polymerase III subunit G like protein-coding 1878.17 chr13 108155259 108156525 + 3.66667 NA Intergenic Intergenic 58890 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 917.334-2 chr5 33435822 33436317 + 3.66667 NA Intergenic Intergenic -4627 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 882 chr14 22314120 22314927 + 3.66667 NA Intergenic Intergenic 118230 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 1093.17 chr1 64268763 64269220 + 3.66667 NA Intergenic AluSx3|SINE|Alu 65368 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 755.167 chr6 73610223 73610902 + 3.66667 NA intron (NM_012434, intron 8 of 10) intron (NM_012434, intron 8 of 10) 43430 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 1099.17 chr2 118032098 118032917 + 3.66667 NA Intergenic (ATGG)n|Simple_repeat|Simple_repeat -18437 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 896.5 chr6 4155891 4156480 + 3.66667 NA non-coding (NR_103764, exon 4 of 4) non-coding (NR_103764, exon 4 of 4) 20113 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 553-4 chr15 62344899 62345487 + 3.66667 NA Intergenic Intergenic 2164 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 1747.67 chr14 22084077 22084951 + 3.66667 NA Intergenic Intergenic 348239 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 783.5 chr8 85435830 85436300 + 3.66667 NA Intergenic Intergenic -2794 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 1325.67 chr8 138935989 138937141 + 3.66667 NA Intergenic Intergenic -22524 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 650.833 chr2 39642386 39642855 + 3.66667 NA Intergenic Intergenic -22878 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 309.667-20 chr7 18590773 18590973 + 3.66667 NA intron (NM_001321885, intron 4 of 10) intron (NM_001321885, intron 4 of 10) 81603 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 1032.17 chr12 121794854 121795476 + 3.66667 NA TTS (NR_002809) TTS (NR_002809) -1477 NM_019034 54509 Hs.707579 NM_019034 ENSG00000139725 RHOF ARHF|RIF ras homolog family member F, filopodia associated protein-coding 666.5-2 chr4 186587584 186588125 + 3.66667 NA TTS (NM_005245) TTS (NM_005245) -32287 NM_005958 4543 Hs.243467 NM_005958 ENSG00000168412 MTNR1A MEL-1A-R|MT1 melatonin receptor 1A protein-coding 942-2 chr8 126066659 126067144 + 3.66667 NA Intergenic Intergenic -115704 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1019.83 chr2 69914440 69915046 + 3.66667 NA promoter-TSS (NM_002357) promoter-TSS (NM_002357) -298 NM_001202514 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 635.833-2 chr15 35444233 35444833 + 3.66667 NA intron (NM_080650, intron 5 of 8) intron (NM_080650, intron 5 of 8) -72169 NR_037507 100500904 NR_037507 ENSG00000265102 MIR3942 - microRNA 3942 ncRNA 771.834 chr10 52595187 52595484 + 3.66667 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -124802 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 885 chr5 170070928 170071382 + 3.66667 NA intron (NR_156756, intron 47 of 52) intron (NR_156756, intron 47 of 52) -34742 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 754.5 chr12 53757309 53757719 + 3.66667 NA promoter-TSS (NR_104332) promoter-TSS (NR_104332) -480 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 695.167-2 chr6 130760096 130760615 + 3.66667 NA Intergenic L1MA4|LINE|L1 -67050 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 1621.83-3 chr8 104325072 104326258 + 3.66667 NA Intergenic Intergenic -14131 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 612.166-2 chr17 75779831 75780196 + 3.66667 NA promoter-TSS (NM_005324) promoter-TSS (NM_005324) -234 NM_005324 3021 Hs.180877 NM_005324 ENSG00000132475 H3F3B H3.3B H3 histone family member 3B protein-coding 1528.17 chr2 20962753 20964197 + 3.66667 NA Intergenic Intergenic 80598 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 1082.83-2 chr4 55321572 55322590 + 3.66667 NA Intergenic MER33|DNA|hAT-Charlie -24161 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 409.666-2 chr11 14892250 14892473 + 3.66667 NA promoter-TSS (NM_024514) promoter-TSS (NM_024514) -156 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 898.5-3 chr17 59521260 59521886 + 3.66667 NA intron (NR_110813, intron 1 of 2) intron (NR_110813, intron 1 of 2) 5284 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 933.667-2 chr20 13119319 13120099 + 3.66667 NA intron (NM_001349945, intron 9 of 12) intron (NM_001349945, intron 9 of 12) -101565 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 1132-2 chr6 138988307 138988992 + 3.66667 NA promoter-TSS (NM_001286611) promoter-TSS (NM_001286611) -388 NM_001286612 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 785.333-3 chr2 34012586 34012970 + 3.66667 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -54448 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 642.167-4 chr5 52356537 52356864 + 3.66667 NA Intergenic Intergenic 348669 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 549.667-5 chr8 82551845 82552079 + 3.66667 NA Intergenic Intergenic -360142 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 997.334-2 chr7 8296165 8296637 + 3.66667 NA intron (NR_125740, intron 3 of 5) intron (NR_125740, intron 3 of 5) -33789 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 1070.5 chr1 161165765 161166661 + 3.66667 NA promoter-TSS (NM_001122764) promoter-TSS (NM_001122764) -213 NM_001350130 5498 Hs.517373 NM_000309 ENSG00000143224 PPOX PPO|V290M|VP protoporphyrinogen oxidase protein-coding 1431.5 chr10 60646999 60647747 + 3.66667 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) -74417 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 669.5 chr12 54216931 54217700 + 3.66667 NA Intergenic Intergenic 14161 NR_039851 100616400 NR_039851 ENSG00000283803 MIR3198-2 mir-3198-2 microRNA 3198-2 ncRNA 873.834 chr10 30359807 30360086 + 3.66667 NA Intergenic Intergenic 8719 NR_106985 102466227 NR_106985 ENSG00000284277 MIR7162 hsa-mir-7162 microRNA 7162 ncRNA 640.666 chr22 19299926 19300234 + 3.66667 NA Intergenic PRIMAX-int|LTR|ERV1 -8361 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 946.167 chr2 218038975 218039456 + 3.66667 NA intron (NR_034176, intron 2 of 13) intron (NR_034176, intron 2 of 13) 4281 NR_034176 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 979.667 chr11 45655201 45655621 + 3.66667 NA intron (NM_003654, intron 1 of 3) intron (NM_003654, intron 1 of 3) 10211 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 538.166 chr10 114786325 114786903 + 3.66667 NA Intergenic Intergenic -18310 NM_001322884 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 2000.33 chr4 73019191 73020290 + 3.66667 NA Intergenic Intergenic 49976 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 661-3 chr19 35947207 35947613 + 3.66667 NA TTS (NM_024509) TTS (NM_024509) 295 NR_136525 105372383 Hs.641592 NR_136525 LOC105372383 - uncharacterized LOC105372383 ncRNA 701.667 chr12 32312236 32312738 + 3.66667 NA intron (NR_148725, intron 4 of 9) intron (NR_148725, intron 4 of 9) -87071 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 1204 chr5 99104087 99104673 + 3.66667 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -174666 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 1013.17 chr11 108008547 108009341 + 3.66667 NA promoter-TSS (NM_003478) promoter-TSS (NM_003478) 46 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 608.834 chr1 115608292 115608584 + 3.66667 NA Intergenic LTR16E2|LTR|ERVL -33532 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 737.5-2 chr7 86914066 86914853 + 3.66667 NA intron (NM_001291991, intron 12 of 20) intron (NM_001291991, intron 12 of 20) 51440 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 569-6 chr8 56060211 56060531 + 3.66667 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 13530 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 502.834 chr1 34005447 34005633 + 3.66667 NA intron (NM_052896, intron 3 of 69) intron (NM_052896, intron 3 of 69) 136584 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 465.167-5 chr8 60135960 60136525 + 3.66667 NA Intergenic Intergenic 145158 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 1109.67-2 chr16 84065302 84066385 + 3.66667 NA intron (NM_003791, intron 17 of 22) intron (NM_003791, intron 17 of 22) -23686 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 665.166 chr12 66693854 66694126 + 3.66667 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) -14914 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 981.333-2 chr5 33440627 33441536 + 3.66667 NA non-coding (NR_047678, exon 1 of 18) non-coding (NR_047678, exon 1 of 18) 305 NR_047678 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 1200.17 chr1 89987002 89987840 + 3.66667 NA Intergenic Intergenic 7545 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 407.833-6 chr7 49852801 49853244 + 3.66667 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 77689 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 1092.5-2 chr20 46767080 46767562 + 3.66667 NA Intergenic Intergenic 57672 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 1133.67 chr4 67393480 67394149 + 3.66667 NA Intergenic Intergenic 28186 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 1012.33-2 chr8 78921301 78921970 + 3.66667 NA Intergenic Intergenic 84106 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 1812.83 chr8 144508071 144509162 + 3.66667 NA promoter-TSS (NM_138431) promoter-TSS (NM_138431) -420 NR_130120 113655 Hs.7678 NM_138431 ENSG00000167700 MFSD3 - major facilitator superfamily domain containing 3 protein-coding 1373.17-3 chr8 134886027 134886837 + 3.66667 NA Intergenic Intergenic 36497 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 739.167-2 chr5 90386299 90386790 + 3.66667 NA Intergenic Intergenic 23242 NM_004365 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 351.334-8 chr8 79471367 79471533 + 3.66667 NA Intergenic MSTB1|LTR|ERVL-MaLR 139262 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 750.167 chr10 4815980 4816359 + 3.66667 NA Intergenic Intergenic -10008 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 1531.5-2 chr6 35583381 35584453 + 3.66667 NA 3' UTR (NM_001145777, exon 7 of 7) 3' UTR (NM_001145777, exon 7 of 7) -71021 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 657.834 chr6 57324727 57325111 + 3.66667 NA intron (NM_000947, intron 4 of 13) intron (NM_000947, intron 4 of 13) 7289 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 765.167-2 chr13 38915590 38915915 + 3.66667 NA Intergenic AluSx|SINE|Alu 75079 NM_145286 161003 Hs.327794 NM_145286 ENSG00000133115 STOML3 Epb7.2l|SRO stomatin like 3 protein-coding 542.833 chr19 33235210 33235819 + 3.66667 NA Intergenic Intergenic -9664 NM_019849 56301 Hs.58679 NM_019849 ENSG00000130876 SLC7A10 ASC1|HASC-1|asc-1 solute carrier family 7 member 10 protein-coding 929.167 chr16 12896296 12897218 + 3.66667 NA Intergenic MER20|DNA|hAT-Charlie -4841 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 678 chr12 118182175 118182422 + 3.66667 NA intron (NM_001346490, intron 15 of 21) MIRb|SINE|MIR 8237 NM_001346497 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 896.834-2 chr14 69603235 69603806 + 3.66667 NA Intergenic MER20B|DNA|hAT-Charlie -8076 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 685.834 chr1 184663892 184664385 + 3.66667 NA Intergenic CpG 90720 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 1313.83 chr9 33225713 33226455 + 3.66667 NA Intergenic L1ME2|LINE|L1 -14083 NM_014471 27290 Hs.555934 NM_014471 ENSG00000122711 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 1398 chr7 107167510 107169029 + 3.66667 NA promoter-TSS (NM_012257).2 promoter-TSS (NM_012257).2 -692 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 867.166 chr16 86072695 86073218 + 3.66667 NA Intergenic Intergenic -123225 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 653.833-4 chr7 47180136 47180655 + 3.66667 NA Intergenic Intergenic 284408 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 843.334 chr14 37874617 37875070 + 3.66667 NA Intergenic Intergenic 27281 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 955.167-3 chr7 131945311 131945787 + 3.66667 NA intron (NR_110836, intron 5 of 5) CpG 35329 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 1351 chr13 48037555 48038343 + 3.66667 NA intron (NM_001304745, intron 1 of 1) CpG 223 NM_018283 55270 Hs.144407 NM_018283 ENSG00000136159 NUDT15 MTH2|NUDT15D nudix hydrolase 15 protein-coding 520.001 chr17 17237456 17237653 + 3.66667 NA promoter-TSS (NM_001353229) promoter-TSS (NM_001353229) -386 NM_144997 201163 Hs.31652 NM_144606 ENSG00000154803 FLCN BHD|DENND8B|FLCL folliculin protein-coding 880 chr1 102191852 102192233 + 3.66667 NA Intergenic Intergenic -194808 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 760.001 chr8 11411384 11411640 + 3.66667 NA intron (NR_026814, intron 3 of 6) intron (NR_026814, intron 3 of 6) 43110 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 1510.83 chr2 70301173 70302487 + 3.66667 NA exon (NM_001329752, exon 1 of 3) exon (NM_001329752, exon 1 of 3) 237 NM_001329753 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 1743-3 chr3 126982152 126983033 + 3.66667 NA Intergenic CpG -6002 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 812.5 chr6 130697876 130698548 + 3.66667 NA Intergenic Intergenic -129193 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 1090.67-3 chr18 36809442 36810374 + 3.66667 NA intron (NM_001330572, intron 2 of 6) intron (NM_001330572, intron 2 of 6) 19094 NM_015476 25941 Hs.436636 NM_015476 ENSG00000134779 TPGS2 C18orf10|HMFN0601|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 549.5 chr16 85245589 85245834 + 3.66667 NA Intergenic Intergenic -37247 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 742.501 chr17 31558888 31559187 + 3.66667 NA promoter-TSS (NR_029710) promoter-TSS (NR_029710) -959 NR_029710 406968 NR_029710 ENSG00000207614 MIR193A MIRN193|MIRN193A|mir-193a microRNA 193a ncRNA 1424.83-2 chr5 165629967 165630856 + 3.66667 NA Intergenic Intergenic 1160132 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 834 chr12 49514132 49514523 + 3.66667 NA intron (NR_120663, intron 10 of 14) intron (NR_120663, intron 10 of 14) -24703 NM_001314030 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 787-4 chr5 177113635 177114110 + 3.66667 NA Intergenic AluSz6|SINE|Alu -19207 NM_172349 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 868.334 chr19 46661187 46661542 + 3.66667 NA promoter-TSS (NR_040041) promoter-TSS (NR_040041) -114 NR_040041 100506068 Hs.434327 NR_040041 ENSG00000245598 DACT3-AS1 - DACT3 antisense RNA 1 ncRNA 1317.17-2 chr5 50750640 50751977 + 3.66667 NA intron (NM_024615, intron 3 of 25) intron (NM_024615, intron 3 of 25) 83894 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 1436.17 chr5 74648548 74649524 + 3.66667 NA intron (NM_001292004, intron 1 of 13) intron (NM_001292004, intron 1 of 13) -7612 NM_001256576 8507 Hs.104925 NM_003633 ENSG00000171617 ENC1 CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10 ectodermal-neural cortex 1 protein-coding 712.333-2 chr4 108018699 108019144 + 3.66667 NA intron (NM_005327, intron 3 of 7) intron (NM_005327, intron 3 of 7) 14257 NM_001331027 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 863.499 chrX 36908911 36909348 + 3.66667 NA Intergenic Intergenic -99230 NM_001013736 442444 Hs.535216 NM_001013736 ENSG00000198173 FAM47C - family with sequence similarity 47 member C protein-coding 690.667 chr1 30707909 30708552 + 3.66667 NA Intergenic Intergenic -10542 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 474.334-5 chr8 129610243 129610456 + 3.66667 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -35331 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 1793.83 chr17 32998095 32998972 + 3.66667 NA TTS (NM_001317225) TTS (NM_001317225) 5682 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 489.834 chr1 31815653 31816360 + 3.66667 NA promoter-TSS (NM_001281988) promoter-TSS (NM_001281988) 45 NM_001281987 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 853.667-2 chr20 9610106 9610499 + 3.66667 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -95304 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 1376.33-2 chr14 67599721 67600564 + 3.66667 NA exon (NM_001363694, exon 1 of 4) exon (NM_001363694, exon 1 of 4) 126 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 1110.17 chr17 48351375 48352231 + 3.66667 NA intron (NM_001075099, intron 3 of 12) intron (NM_001075099, intron 3 of 12) 57456 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 770.999 chr15 85864775 85865485 + 3.66667 NA Intergenic Intergenic 39495 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 759.5-3 chr12 87953389 87953741 + 3.66667 NA Intergenic Intergenic 75836 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 1016.67-2 chr8 48318423 48319307 + 3.66667 NA Intergenic Intergenic -232702 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 1651.5 chr19 42268343 42269182 + 3.66667 NA intron (NM_001304815, intron 1 of 20) CpG 225 NM_001304815 23152 Hs.388236 NM_015125 ENSG00000079432 CIC MRD45 capicua transcriptional repressor protein-coding 1432.5 chr3 153025707 153026526 + 3.66667 NA Intergenic Intergenic -136110 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 1187.17 chr2 10435028 10435887 + 3.66667 NA Intergenic Intergenic 11392 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 957.5-2 chr20 40968691 40969335 + 3.66667 NA Intergenic Intergenic -11700 NR_145524 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 1018.33 chr5 132419195 132420015 + 3.66667 NA intron (NR_161242, intron 1 of 3) intron (NR_161242, intron 1 of 3) 8676 NR_161242 441108 Hs.658288 NM_001013717 C5orf56 - chromosome 5 open reading frame 56 ncRNA 1063.5-2 chr5 87781052 87781593 + 3.66667 NA Intergenic Intergenic 119280 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 2055 chr4 38730808 38732213 + 3.66667 NA Intergenic MIR|SINE|MIR 51480 NM_030956 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 917.168 chr6 146699927 146700645 + 3.66667 NA intron (NM_024694, intron 12 of 35) intron (NM_024694, intron 12 of 35) 101314 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 909.667 chr13 28796778 28797279 + 3.66667 NA Intergenic Intergenic -23311 NM_001366650 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 1794 chr10 32367362 32368627 + 3.66667 NA intron (NR_104163, intron 1 of 1) intron (NR_104163, intron 1 of 1) 10775 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 678.666-2 chr2 223970060 223970489 + 3.66667 NA Intergenic Intergenic 12811 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 1159.17-2 chr20 37195313 37195983 + 3.66667 NA intron (NM_001324306, intron 2 of 15) intron (NM_001324306, intron 2 of 15) -16100 NM_152503 140699 Hs.349125 NM_152503 ENSG00000101353 MROH8 C20orf131|C20orf132 maestro heat like repeat family member 8 protein-coding 2065.33 chr14 75710790 75712431 + 3.66667 NA intron (NM_015072, intron 9 of 31) intron (NM_015072, intron 9 of 31) 50364 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 488-6 chr9 35732234 35732479 + 3.66667 NA promoter-TSS (NM_006368) promoter-TSS (NM_006368) -161 NM_006289 7094 Hs.471014 NM_006289 ENSG00000137076 TLN1 ILWEQ|TLN|talin-1 talin 1 protein-coding 869.833 chr3 32144255 32144743 + 3.66667 NA intron (NM_015141, intron 4 of 7) intron (NM_015141, intron 4 of 7) 37988 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 1369.5-2 chr5 129852507 129853395 + 3.66667 NA Intergenic Intergenic -51514 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 1144.5 chr12 120648716 120649609 + 3.66667 NA intron (NM_001033677, intron 1 of 5) intron (NM_001033677, intron 1 of 5) -1115 NM_004276 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 1634.67 chr21 18499371 18500250 + 3.66667 NA Intergenic Intergenic -96025 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 1395-2 chr2 217988338 217989338 + 3.66667 NA intron (NR_135524, intron 3 of 3) MIRb|SINE|MIR 10131 NR_135524 105373878 Hs.630709 NR_135524 ENSG00000223923 LOC105373878 - uncharacterized LOC105373878 ncRNA 877.501 chr1 119286510 119287029 + 3.66667 NA Intergenic Intergenic -41483 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 919.5 chr11 55707186 55707824 + 3.66667 NA Intergenic Intergenic 42338 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 854-2 chr10 29535398 29536121 + 3.66667 NA intron (NM_021738, intron 7 of 37) intron (NM_021738, intron 7 of 37) 9338 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 1107.33-2 chr3 183469132 183469742 + 3.66667 NA Intergenic Intergenic 15623 NR_145763 109617007 NR_145763 ENSG00000199363 SNORA63E - small nucleolar RNA, H/ACA box 63E snoRNA 436.167-3 chr19 45059427 45059878 + 3.66667 NA intron (NR_103529, intron 8 of 20) intron (NR_103529, intron 8 of 20) -15975 NM_001319055 79760 Hs.466919 NM_024707 ENSG00000142252 GEMIN7 SIP3 gem nuclear organelle associated protein 7 protein-coding 995-2 chr2 84077317 84078120 + 3.66667 NA Intergenic MIR3|SINE|MIR -212964 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 1487.17 chr9 101977341 101978220 + 3.66667 NA Intergenic Intergenic -239200 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 670.167 chr11 8192473 8193052 + 3.66667 NA Intergenic Intergenic -23737 NM_001135109 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 845.833 chr17_KI270729v1_random 2801 3639 + 3.66667 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 889.667 chr12 120086991 120087715 + 3.66667 NA intron (NM_001367886, intron 8 of 9) intron (NM_001367886, intron 8 of 9) 29400 NM_001167606 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 1206.17 chr4 52911484 52912260 + 3.66667 NA intron (NM_152540, intron 6 of 8) LTR50|LTR|ERVL 49555 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 1085.33-2 chr5 141557817 141558305 + 3.66667 NA promoter-TSS (NR_038333) promoter-TSS (NR_038333) -250 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 724.5-3 chr2 25361838 25362453 + 3.66667 NA Intergenic Intergenic -19555 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 451.834 chr14 20972123 20972385 + 3.66667 NA Intergenic L2a|LINE|L2 16767 NM_002934 6036 Hs.728 NM_002934 ENSG00000169385 RNASE2 EDN|RAF3|RNS2 ribonuclease A family member 2 protein-coding 852.167-2 chr9 121212818 121213791 + 3.66667 NA intron (NM_001353054, intron 5 of 25) intron (NM_001353054, intron 5 of 25) -11435 NM_016322 51552 Hs.371563 NM_016322 ENSG00000119396 RAB14 FBP|RAB-14 RAB14, member RAS oncogene family protein-coding 835.334 chr8 72319575 72319971 + 3.66667 NA Intergenic Intergenic -68139 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 332.667-3 chr11 123478509 123478673 + 3.66667 NA intron (NM_001367421, intron 2 of 20) intron (NM_001367421, intron 2 of 20) -31325 NM_001330396 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 1108.83 chr15 65856253 65857295 + 3.66667 NA Intergenic AluSx1|SINE|Alu -12717 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 606-3 chr5 38208707 38209041 + 3.66667 NA Intergenic Intergenic -49685 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 492-5 chr9 4759315 4759616 + 3.66667 NA Intergenic Intergenic -17422 NM_001199853 50808 Hs.732022 NM_016282 ENSG00000147853 AK3 AK3L1|AK6|AKL3L|AKL3L1|FIX adenylate kinase 3 protein-coding 1347 chr12 12812992 12813716 + 3.66667 NA promoter-TSS (NM_016355) promoter-TSS (NM_016355) 8 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 349.833-6 chr2 190070272 190070596 + 3.66667 NA Intergenic Intergenic -7705 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 789.834 chr1 160990239 160990899 + 3.66667 NA Intergenic Intergenic 30583 NM_001348091 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 1277.67 chr13 21638046 21639237 + 3.66667 NA Intergenic Intergenic -32432 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 2050-2 chr2 152175052 152176469 + 3.66667 NA promoter-TSS (NM_005843) promoter-TSS (NM_005843) 3 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 1005.17 chr14 35140652 35141192 + 3.66667 NA intron (NM_014672, intron 4 of 7) intron (NM_014672, intron 4 of 7) 18370 NM_014672 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 947.667 chr4 18593768 18594220 + 3.66667 NA Intergenic Intergenic -572119 NR_158565 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 1535.83 chr5 54242999 54244016 + 3.66667 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 67066 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 497.334 chr1 179944191 179944348 + 3.66667 NA Intergenic L1ME3E|LINE|L1 -10541 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 900.167 chr16 52912497 52913038 + 3.66667 NA Intergenic Intergenic 140106 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 405-7 chr17 69575098 69575276 + 3.66667 NA Intergenic MIRc|SINE|MIR -18800 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 1252.67 chr1 65687423 65688334 + 3.66667 NA Intergenic Intergenic -104632 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 974.001 chr15 89177737 89178313 + 3.66667 NA intron (NM_007011, intron 10 of 14) intron (NM_007011, intron 10 of 14) 43554 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 720.833 chr2 133780218 133780565 + 3.66667 NA Intergenic Intergenic -211928 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 708.666-3 chr8 131860986 131861476 + 3.66667 NA Intergenic Intergenic -42862 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 1495.83 chr17 41801060 41802446 + 3.66667 NA TTS (NM_006455) TTS (NM_006455) 10196 NM_006455 10609 Hs.446459 NM_006455 ENSG00000141696 P3H4 LEPREL4|NO55|NOL55|SC65 prolyl 3-hydroxylase family member 4 (non-enzymatic) protein-coding 687.5 chr4 111854250 111854954 + 3.66667 NA Intergenic Intergenic -290852 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 1374.83 chr14 59444115 59445013 + 3.66667 NA Intergenic AluY|SINE|Alu 20816 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 1059.5-2 chr9 93963109 93964020 + 3.66667 NA Intergenic AluJb|SINE|Alu 7730 NR_144455 101928040 Hs.375820 NR_144455 ENSG00000235601 BARX1-DT BARX1-AS1 BARX1 divergent transcript ncRNA 1566.83 chr9 97923139 97924181 + 3.66667 NA Intergenic Intergenic -1090 NM_001330725 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 1136.83 chr3 15405564 15406506 + 3.66667 NA Intergenic Intergenic 21509 NM_001330662 131965 Hs.149487 NM_152396 ENSG00000206562 METTL6 - methyltransferase like 6 protein-coding 912.168 chr17 80082381 80083083 + 3.66667 NA intron (NM_017950, intron 12 of 19) intron (NM_017950, intron 12 of 19) -16096 NR_039607 100616121 NR_039607 ENSG00000265561 MIR1268B - microRNA 1268b ncRNA 1221.5 chr2 168961506 168962496 + 3.66667 NA intron (NM_003742, intron 18 of 27) intron (NM_003742, intron 18 of 27) 60710 NM_001081686 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 1376-2 chr11 44774949 44776184 + 3.66667 NA intron (NM_130783, intron 2 of 9) intron (NM_130783, intron 2 of 9) 48604 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 535.334 chr12 2812619 2812874 + 3.66667 NA promoter-TSS (NR_147202) promoter-TSS (NR_147202) 78 NM_018463 55846 Hs.239 NM_018463 ENSG00000111203 ITFG2 FGGAP1|MDS028 integrin alpha FG-GAP repeat containing 2 protein-coding 1188.5 chr12 117856602 117857231 + 3.66667 NA intron (NM_173598, intron 2 of 19) intron (NM_173598, intron 2 of 19) 112074 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 712.833 chr8 72007393 72007844 + 3.66667 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 67966 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 940.833 chr4 60805472 60805934 + 3.66667 NA Intergenic L2|LINE|L2 -116916 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 1209.67 chr1 42657697 42658473 + 3.66667 NA promoter-TSS (NM_001330510) promoter-TSS (NM_001330510) -338 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 855.167 chr4 84971434 84972142 + 3.66667 NA intron (NR_152782, intron 2 of 3) Ricksha_c|DNA|MULE-MuDR 4304 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 744.833-2 chr4 99884993 99885517 + 3.66667 NA intron (NM_021970, intron 5 of 6) intron (NM_021970, intron 5 of 6) 9172 NM_021970 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 1203-2 chrX 50747531 50748058 + 3.66667 NA intron (NR_027121, intron 1 of 9) intron (NR_027121, intron 1 of 9) 66250 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 1172.33 chr3 179322217 179322984 + 3.66667 NA promoter-TSS (NM_001303426) promoter-TSS (NM_001303426) -431 NM_001303426 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 1103.83 chr10 95374446 95375073 + 3.66667 NA intron (NM_001034955, intron 17 of 30) Tigger16a|DNA|TcMar-Tigger 66421 NM_001290298 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 971.5-2 chr17 28951851 28952631 + 3.66667 NA promoter-TSS (NM_020889) promoter-TSS (NM_020889) -723 NM_001290131 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 596-7 chr8 85974028 85974344 + 3.66667 NA Intergenic MIR|SINE|MIR 95482 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 1616.67 chr1 186212316 186213268 + 3.66667 NA Intergenic Intergenic -83481 NM_005807 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 1098.5-2 chr20 8721047 8721571 + 3.66667 NA intron (NM_182734, intron 14 of 32) intron (NM_182734, intron 14 of 32) -109876 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 1589.17 chr10 25113068 25113791 + 3.66667 NA non-coding (NR_120649, exon 1 of 8) non-coding (NR_120649, exon 1 of 8) 371 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 826.334 chr11 65818369 65818767 + 3.66667 NA Intergenic Intergenic -15395 NM_152760 254122 Hs.591950 NM_152760 ENSG00000172803 SNX32 SNX6B sorting nexin 32 protein-coding 1203.83-2 chr16 19502456 19503282 + 3.66667 NA non-coding (NR_136689, exon 6 of 6) non-coding (NR_136689, exon 6 of 6) 19229 NM_001324066 51573 Hs.512607 NM_016641 ENSG00000006007 GDE1 363E6.2|MIR16 glycerophosphodiester phosphodiesterase 1 protein-coding 378.333-5 chr14 101722268 101722404 + 3.66667 NA Intergenic L1ME3Cz|LINE|L1 -8101 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 1649.17 chr18 62131229 62131993 + 3.66667 NA intron (NM_176787, intron 14 of 30) Looper|DNA|PiggyBac 55445 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 1129.83 chr2 29841015 29841824 + 3.66667 NA intron (NM_004304, intron 1 of 28) L3|LINE|CR1 80167 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 1600.67 chr1 26275476 26276168 + 3.66667 NA intron (NM_022778, intron 12 of 13) intron (NM_022778, intron 12 of 13) -4264 NM_031286 83442 Hs.109051 NM_031286 ENSG00000142669 SH3BGRL3 HEL-S-297|SH3BP-1|TIP-B1 SH3 domain binding glutamate rich protein like 3 protein-coding 634.333-2 chr11 61796784 61797569 + 3.66667 NA TTS (NM_004111) TTS (NM_004111) 4265 NM_004111 2237 Hs.409065 NM_004111 ENSG00000168496 FEN1 FEN-1|MF1|RAD2 flap structure-specific endonuclease 1 protein-coding 1144.33-2 chr7 13262691 13263611 + 3.66667 NA Intergenic Intergenic 575518 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 696.667 chr10 73211492 73211735 + 3.66667 NA intron (NM_173348, intron 7 of 13) intron (NM_173348, intron 7 of 13) 35642 NM_015190 23234 Hs.408577 NM_015190 ENSG00000213551 DNAJC9 HDJC9|JDD1|SB73 DnaJ heat shock protein family (Hsp40) member C9 protein-coding 456.834 chr1 41783265 41783459 + 3.66667 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 135560 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 793.667 chr10 110600661 110601112 + 3.66667 NA intron (NM_005445, intron 22 of 28) intron (NM_005445, intron 22 of 28) 33195 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 1108.5 chr15 70722577 70723079 + 3.66667 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) -20546 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 1164.33-3 chr8 141726567 141727382 + 3.66667 NA Intergenic Intergenic 59339 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 1230.83 chr1 157170219 157170942 + 3.66667 NA Intergenic Intergenic -31989 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 448.5-6 chr17 11880687 11881095 + 3.66667 NA intron (NM_001372, intron 54 of 68) MER91B|DNA|hAT-Tip100 -2011 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 1165.5 chr20 44867534 44868208 + 3.66667 NA Intergenic Intergenic -17834 NM_139323 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 1175.33-3 chr2 134897805 134898565 + 3.66667 NA intron (NR_036549, intron 1 of 4) intron (NR_036549, intron 1 of 4) 20421 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 916.167 chr14 46580825 46581527 + 3.66667 NA Intergenic Intergenic 70605 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 1372.67 chr6 89367654 89368546 + 3.66667 NA exon (NM_021244, exon 7 of 7) exon (NM_021244, exon 7 of 7) -15378 NM_016021 51465 Hs.163776 NM_016021 ENSG00000198833 UBE2J1 CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p ubiquitin conjugating enzyme E2 J1 protein-coding 1347-3 chr7 116929980 116930838 + 3.66667 NA Intergenic AluJo|SINE|Alu -23092 NM_018412 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 760-4 chr2 178761746 178762227 + 3.66667 NA intron (NM_133379, intron 43 of 45) intron (NM_133379, intron 43 of 45) -14940 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 743 chr19 47868829 47869160 + 3.66667 NA Intergenic Intergenic 17321 NM_003167 6822 Hs.515835 NM_003167 ENSG00000105398 SULT2A1 DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa sulfotransferase family 2A member 1 protein-coding 1177-2 chr3 63961737 63962262 + 3.66667 NA intron (NM_001177387, intron 4 of 12) intron (NM_001177387, intron 4 of 12) -5795 NM_001128149 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7|SGF73 ataxin 7 protein-coding 944.5 chr5 32092816 32093676 + 3.66667 NA intron (NM_178140, intron 21 of 24) intron (NM_178140, intron 21 of 24) 81073 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 1404.17 chr1 108827885 108828519 + 3.66667 NA intron (NM_152763, intron 10 of 15) intron (NM_152763, intron 10 of 15) 28892 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 865.833 chr4 169005602 169006130 + 3.66667 NA intron (NM_032783, intron 3 of 4) intron (NM_032783, intron 3 of 4) 4389 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 506.834-2 chr20 52484390 52484751 + 3.66667 NA Intergenic Intergenic -136268 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 1028.5 chr9 26856532 26857018 + 3.66667 NA intron (NM_001167575, intron 5 of 5) L3|LINE|CR1 36027 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 783-2 chr5 44536230 44537068 + 3.66667 NA Intergenic A-rich|Low_complexity|Low_complexity -26367 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 887.334 chr1 232635533 232636031 + 3.66667 NA Intergenic Intergenic -82289 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 246-8 chr14 44913760 44913911 + 3.66667 NA Intergenic Intergenic -1918 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 1219.67 chr2 137467202 137467681 + 3.66667 NA intron (NM_001316349, intron 15 of 27) MER5A1|DNA|hAT-Charlie 460491 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 715.667 chr2 72892568 72892963 + 3.66667 NA TTS (NM_003124) TTS (NM_003124) 5357 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 835.999 chr13 69537220 69537987 + 3.66667 NA Intergenic Intergenic 315257 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 1301.83 chr6 36360292 36361085 + 3.66667 NA intron (NM_001207035, intron 7 of 7) intron (NM_001207035, intron 7 of 7) -23800 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 1327.67 chr11 84384376 84385081 + 3.66667 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -67389 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 1278.5 chr15 83571879 83572736 + 3.66667 NA intron (NM_001324185, intron 5 of 9) intron (NM_001324185, intron 5 of 9) 81693 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 718.334 chr20 13820126 13820949 + 3.66667 NA non-coding (NR_029377, exon 12 of 12) non-coding (NR_029377, exon 12 of 12) 35509 NR_147980 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 1018.5-4 chr5 79020750 79021683 + 3.66667 NA non-coding (NR_104003, exon 10 of 10) non-coding (NR_104003, exon 10 of 10) -35258 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 858.334-2 chr6 74091301 74091974 + 3.66667 NA intron (NR_110856, intron 1 of 3) L2a|LINE|L2 22186 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 816.333-2 chr6 134110771 134111616 + 3.66667 NA Intergenic Intergenic 6487 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 1437.67 chr5 133110727 133111614 + 3.66667 NA Intergenic Intergenic 59157 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 758.833-2 chr5 159133076 159133566 + 3.66667 NA Intergenic Intergenic 32838 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 1058.83 chr11 17383677 17384484 + 3.66667 NA Intergenic Intergenic 4579 NM_000525 3767 Hs.248141 NM_000525 ENSG00000187486 KCNJ11 BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3 potassium voltage-gated channel subfamily J member 11 protein-coding 1016.5 chr8 130207365 130208563 + 3.66667 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 88569 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 1050.67 chr12 6195275 6196096 + 3.66667 NA Intergenic Intergenic -4261 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 1087.33-2 chrX 148530225 148531006 + 3.66667 NA intron (NM_001169124, intron 1 of 19) intron (NM_001169124, intron 1 of 19) 29998 NM_002025 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 608.334 chr10 5443093 5443313 + 3.66667 NA intron (NM_001047160, intron 3 of 11) MIRb|SINE|MIR -3348 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 1326.5 chr6 106565770 106567144 + 3.66667 NA intron (NM_001371242, intron 21 of 21) intron (NM_001371242, intron 21 of 21) 54602 NM_001624 202 Hs.724262 NM_001624 ENSG00000112297 CRYBG1 AIM1|ST4 crystallin beta-gamma domain containing 1 protein-coding 855.166 chr6 138590755 138591413 + 3.66667 NA Intergenic Intergenic -18515 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 1954.5-2 chr2 130371925 130373030 + 3.66667 NA exon (NM_001142370, exon 9 of 11) exon (NM_001142370, exon 9 of 11) 16421 NM_014369 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase non-receptor type 18 protein-coding 573.167-2 chr3 113035310 113035789 + 3.66667 NA Intergenic LTR50|LTR|ERVL -15878 NM_001319111 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 1253.67 chr14 100192713 100193306 + 3.66667 NA Intergenic CpG -33364 NM_206918 123099 Hs.159643 NM_206918 ENSG00000168350 DEGS2 C14orf66|DES2|FADS8 delta 4-desaturase, sphingolipid 2 protein-coding 1418 chr17 76506154 76507215 + 3.66667 NA Intergenic Intergenic -5257 NM_024599 79651 Hs.464157 NM_024599 ENSG00000129667 RHBDF2 RHBDL5|RHBDL6|TEC|TOC|TOCG|iRhom2 rhomboid 5 homolog 2 protein-coding 1091.83-2 chr6 132484076 132484593 + 3.66667 NA intron (NM_001326579, intron 2 of 9) intron (NM_001326579, intron 2 of 9) 28449 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 1265.33 chr6 55953226 55954018 + 3.66667 NA Intergenic Intergenic -78032 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 896.501 chr10 103686092 103686606 + 3.66667 NA intron (NM_014631, intron 6 of 13) intron (NM_014631, intron 6 of 13) -8134 NM_001365079 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 1166.67-2 chr15 57559409 57560404 + 3.66667 NA Intergenic Intergenic -31998 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 712.5-5 chr9 72038269 72039198 + 3.66667 NA Intergenic Intergenic 21872 NM_001128618 138240 Hs.371235 NM_001128618 ENSG00000204669 C9orf57 - chromosome 9 open reading frame 57 protein-coding 1524.33 chr8 132191386 132192619 + 3.66667 NA intron (NM_004519, intron 1 of 14) L2c|LINE|L2 -86737 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 509.667 chr19 8580596 8581139 + 3.66667 NA 3' UTR (NM_030957, exon 26 of 26) 3' UTR (NM_030957, exon 26 of 26) -3425 NM_012335 4542 Hs.465818 NM_012335 ENSG00000142347 MYO1F - myosin IF protein-coding 772.333-3 chr4 77240278 77240740 + 3.66667 NA Intergenic Intergenic 83302 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 1491.33 chr5 141040402 141041647 + 3.66667 NA Intergenic Intergenic -10352 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 1396.83 chr8 102810871 102811600 + 3.66667 NA TTS (NR_149020) TTS (NR_149020) 4413 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 1440.67 chr22 33210096 33210886 + 3.66667 NA Intergenic Intergenic 101962 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 1009 chr1 225975878 225976771 + 3.66667 NA Intergenic Intergenic 23019 NM_152608 163859 Hs.520192 NM_152608 ENSG00000143751 SDE2 C1orf55|dJ671D7.1 SDE2 telomere maintenance homolog protein-coding 1110.67 chr6 152947964 152948650 + 3.66667 NA Intergenic Intergenic 34734 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 951 chr15 23648837 23649574 + 3.66667 NA Intergenic Intergenic -1338 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 919.667 chr8 64695670 64696185 + 3.66667 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 102810 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 849 chr2 218292333 218292796 + 3.66667 NA promoter-TSS (NM_001321433) promoter-TSS (NM_001321433) 13 NM_001321433 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 666.166 chr20 49334101 49334380 + 3.66667 NA Intergenic Intergenic 53557 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 789 chr1 11037349 11038204 + 3.66667 NA exon (NM_006610, exon 7 of 11) exon (NM_006610, exon 7 of 11) 9463 NM_139208 10747 Hs.655645 NM_006610 ENSG00000009724 MASP2 MAP19|MASP-2|MASP1P1|sMAP mannan binding lectin serine peptidase 2 protein-coding 1203 chr14 83300062 83301270 + 3.66667 NA Intergenic Intergenic 658034 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 833.166 chr2 179129613 179130254 + 3.66667 NA intron (NM_178123, intron 10 of 17) L1MC5|LINE|L1 -79796 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 384-8 chr6 139568953 139569275 + 3.66667 NA Intergenic L3|LINE|CR1 -94518 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 1529.66 chr12 125532799 125534061 + 3.66667 NA intron (NM_052907, intron 4 of 8) intron (NM_052907, intron 4 of 8) -89022 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 1187 chr12 6563377 6563860 + 3.66667 NA exon (NM_001258309, exon 8 of 17) exon (NM_001258309, exon 8 of 17) 4673 NM_001258308 4839 Hs.534334 NM_006170 ENSG00000111641 NOP2 NOL1|NOP120|NSUN1|p120 NOP2 nucleolar protein protein-coding 412.667-3 chr14 64645404 64645708 + 3.66667 NA Intergenic Intergenic -58868 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 910.501 chr22 28829547 28830338 + 3.66667 NA Intergenic MIRb|SINE|MIR -29370 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 1220 chr18 6482465 6483279 + 3.66667 NA Intergenic Intergenic -28544 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 563.834-2 chr5 36151707 36152136 + 3.66667 NA promoter-TSS (NM_001243120) promoter-TSS (NM_001243120) -34 NM_001007527 92255 Hs.294103 NM_001007527 ENSG00000164187 LMBRD2 - LMBR1 domain containing 2 protein-coding 685-2 chr11 75532509 75533014 + 3.66667 NA Intergenic Charlie1a|DNA|hAT-Charlie -6820 NM_030792 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 590.667-6 chr9 36001011 36001304 + 3.66667 NA Intergenic L1MC5|LINE|L1 -35756 NM_001316348 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 823-2 chr5 154406118 154406511 + 3.66667 NA intron (NM_198321, intron 8 of 11) intron (NM_198321, intron 8 of 11) 39508 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 290.667-14 chr3 142586954 142587072 + 3.66667 NA Intergenic Intergenic -8280 NM_001184 545 Hs.271791 NM_001184 ENSG00000175054 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 379-4 chr17 8073559 8073854 + 3.66667 NA exon (NM_001139, exon 13 of 15) exon (NM_001139, exon 13 of 15) 14010 NM_001139 242 Hs.136574 NM_001139 ENSG00000179477 ALOX12B 12R-LOX|ARCI2 arachidonate 12-lipoxygenase, 12R type protein-coding 840.833 chr1 39799773 39800272 + 3.66667 NA Intergenic MIR|SINE|MIR 11046 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 719.667 chr14 22111964 22112570 + 3.66667 NA Intergenic Intergenic 320486 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 939.5-2 chr5 172714677 172715136 + 3.66667 NA Intergenic Intergenic -40597 NR_161233 101928093 Hs.646902 NR_161233 LOC101928093 - uncharacterized LOC101928093 ncRNA 636.001 chr20 35303781 35304059 + 3.66667 NA 3' UTR (NM_199487, exon 9 of 9) 3' UTR (NM_199487, exon 9 of 9) -11495 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 1049.83 chr1 43073586 43074191 + 3.66667 NA Intergenic Intergenic -74016 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 1396.5 chr3 108489379 108490107 + 3.66667 NA intron (NM_014981, intron 10 of 41) intron (NM_014981, intron 10 of 41) 39579 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 868.834-2 chr2 196066644 196067275 + 3.66667 NA intron (NM_018897, intron 1 of 64) intron (NM_018897, intron 1 of 64) 1878 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 1295.33 chr19 47125387 47126226 + 3.66667 NA Intergenic L1MB5|LINE|L1 -5029 NM_001145713 10055 Hs.515500 NM_005500 ENSG00000142230 SAE1 AOS1|HSPC140|SUA1|UBLE1A SUMO1 activating enzyme subunit 1 protein-coding 617-2 chr19 45523555 45523995 + 3.66667 NA intron (NM_003370, intron 8 of 12) intron (NM_003370, intron 8 of 12) 16296 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator stimulated phosphoprotein protein-coding 568.334 chr1 152458507 152458851 + 3.66667 NA Intergenic Intergenic -44416 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 573.167 chr1 220809830 220810324 + 3.66667 NA intron (NM_022746, intron 6 of 6) intron (NM_022746, intron 6 of 6) -14194 NR_157260 106481171 NR_157260 RNU6ATAC35P - RNA, U6atac small nuclear 35, pseudogene pseudo 1005 chr5 140351711 140352223 + 3.66667 NA Intergenic MER20B|DNA|hAT-Charlie -5364 NM_001945 1839 Hs.799 NM_001945 ENSG00000113070 HBEGF DTR|DTS|DTSF|HEGFL heparin binding EGF like growth factor protein-coding 1750.33 chr11 65888185 65889372 + 3.66667 NA promoter-TSS (NM_198897) promoter-TSS (NM_198897) -307 NM_004214 9158 Hs.7768 NM_004214 ENSG00000172500 FIBP FGFIBP|FIBP-1|TROFAS FGF1 intracellular binding protein protein-coding 1003.67 chr10 77111867 77112628 + 3.66667 NA intron (NM_001271519, intron 7 of 28) intron (NM_001271519, intron 7 of 28) -28584 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 534.5 chr3 145767968 145768320 + 3.66667 NA Intergenic Intergenic 301041 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 258-12 chr15 98085164 98085266 + 3.66667 NA intron (NR_120325, intron 2 of 3) intron (NR_120325, intron 2 of 3) 3538 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 292.333-19 chr4 99949100 99949217 + 3.66667 NA intron (NM_002106, intron 3 of 4) intron (NM_002106, intron 3 of 4) 1117 NM_002106 3015 Hs.119192 NM_002106 ENSG00000164032 H2AFZ H2A.Z-1|H2A.z|H2A/z|H2AZ H2A histone family member Z protein-coding 739.5 chr12 84874299 84874702 + 3.66667 NA intron (NM_182767, intron 6 of 11) MIR|SINE|MIR 38299 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 732.5 chr12 65123629 65124201 + 3.66667 NA Intergenic Intergenic -2610 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 746.667 chr14 22303308 22303742 + 3.66667 NA Intergenic Intergenic 129228 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 902.667-2 chr1 236759202 236759852 + 3.66667 NA intron (NM_001278344, intron 20 of 22) intron (NM_001278344, intron 20 of 22) -35754 NM_001291939 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 633.334 chr3 159804919 159805477 + 3.66667 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -34663 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 1262.17 chr2 216696372 216697164 + 3.66667 NA Intergenic Intergenic -1219 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 771.667-2 chr20 63183275 63183939 + 3.66667 NA Intergenic Intergenic 5107 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 1222.67 chr17 7687568 7688658 + 3.66667 NA promoter-TSS (NM_000546) promoter-TSS (NM_000546) -236 NM_018081 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 1341.5 chr11 26276999 26277911 + 3.66667 NA intron (NM_001313726, intron 1 of 27) L2c|LINE|L2 10552 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 1375 chr6 164927452 164928195 + 3.66667 NA Intergenic UCON80_AMi|Unknown|Unknown -105760 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 879.5 chr11 60450121 60450807 + 3.66667 NA Intergenic L1ME3D|LINE|L1 -5345 NM_152866 931 Hs.712553 NM_021950 ENSG00000156738 MS4A1 B1|Bp35|CD20|CVID5|LEU-16|MS4A2|S7 membrane spanning 4-domains A1 protein-coding 618.333-2 chr17 43393415 43394171 + 3.66667 NA Intergenic AluJr|SINE|Alu -4895 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 593.5-2 chr6 42214695 42214990 + 3.66667 NA intron (NM_018141, intron 1 of 6) intron (NM_018141, intron 1 of 6) 3019 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 1034.5-2 chr3 42539769 42540294 + 3.66667 NA Intergenic Intergenic -7425 NR_046654 100874007 Hs.600642 NR_046654 VIPR1-AS1 - VIPR1 antisense RNA 1 ncRNA 785.333 chr12 120356243 120356869 + 3.66667 NA intron (NM_002442, intron 9 of 14) L2b|LINE|L2 12608 NM_002442 4440 Hs.158311 NM_002442 ENSG00000135097 MSI1 - musashi RNA binding protein 1 protein-coding 781.667-2 chr14 86082454 86082987 + 3.66667 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 148042 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 1712.33 chr14 68248116 68248838 + 3.66667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 380310 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1014.17-2 chr3 98601975 98602653 + 3.66667 NA Intergenic Intergenic -8703 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 1206.83 chr13 38872656 38873422 + 3.66667 NA intron (NM_207361, intron 17 of 23) intron (NM_207361, intron 17 of 23) -45448 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 685.834-5 chr6 13336393 13336732 + 3.66667 NA Intergenic Tigger4b|DNA|TcMar-Tigger -7979 NM_001318805 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 814.334 chr2 104944439 104945102 + 3.66667 NA intron (NR_110603, intron 2 of 2) intron (NR_110603, intron 2 of 2) -72175 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 774.333-3 chr8 56970861 56971348 + 3.66667 NA intron (NM_017813, intron 3 of 4) intron (NM_017813, intron 3 of 4) 22763 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 1037 chr15 40279347 40279782 + 3.66667 NA 3' UTR (NM_001190479, exon 1 of 1) 3' UTR (NM_001190479, exon 1 of 1) 3022 NM_001190479 100131244 Hs.711376 NM_001190479 ENSG00000230778 ANKRD63 - ankyrin repeat domain 63 protein-coding 1346.33 chr15 33292560 33293100 + 3.66667 NA Intergenic Intergenic 17415 NR_120326 101928134 Hs.133851 NR_120326 ENSG00000259446 LOC101928134 - uncharacterized LOC101928134 ncRNA 527.334-5 chr9 136484749 136485421 + 3.66667 NA 3' UTR (NM_152571, exon 1 of 1) 3' UTR (NM_152571, exon 1 of 1) -1326 NM_001276418 9919 Hs.522500 NM_014866 ENSG00000148396 SEC16A KIAA0310|SEC16L|p250 SEC16 homolog A, endoplasmic reticulum export factor protein-coding 2354.5 chr16 77675080 77676680 + 3.66667 NA Intergenic Intergenic -46612 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 1001.67 chr11 130862100 130862408 + 3.66667 NA promoter-TSS (NR_125383) promoter-TSS (NR_125383) -144 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 1210.67-2 chr17 40415119 40415944 + 3.66667 NA intron (NM_001067, intron 4 of 34) intron (NM_001067, intron 4 of 34) 2365 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A DNA topoisomerase II alpha protein-coding 656.333-4 chr3 32296292 32296916 + 3.66667 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) 57924 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 1924.83 chr3 109023443 109024154 + 3.66667 NA intron (NM_014429, intron 17 of 27) intron (NM_014429, intron 17 of 27) -69919 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 510.5-3 chr3 186617202 186617503 + 3.66667 NA intron (NM_001622, intron 4 of 6) intron (NM_001622, intron 4 of 6) 4292 NM_001622 197 Hs.324746 NM_001622 ENSG00000145192 AHSG A2HS|AHS|APMR1|FETUA|HSGA alpha 2-HS glycoprotein protein-coding 1606.83 chr4 46270745 46271619 + 3.66667 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 118197 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 634.167-4 chr6 137707647 137708068 + 3.66667 NA Intergenic Intergenic 31180 NR_121618 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 1091.5 chr4 74320386 74321264 + 3.66667 NA Intergenic Intergenic 12355 NM_001270992 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 1034.5 chr1 54181516 54182332 + 3.66667 NA intron (NM_001353354, intron 5 of 6) AluJb|SINE|Alu 18106 NM_001353354 606495 Hs.591426 NM_001031672 ENSG00000215883 CYB5RL - cytochrome b5 reductase like protein-coding 1278.17-2 chr8 52495852 52496870 + 3.66667 NA Intergenic Intergenic 69069 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 1315.67-4 chr8 28419455 28419957 + 3.66667 NA Intergenic Intergenic -33246 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 1259.5 chr3 13648114 13648862 + 3.66667 NA Intergenic Intergenic -2233 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 945.168 chr15 79595926 79596765 + 3.66667 NA Intergenic L3|LINE|CR1 163829 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 1083.5 chr18 44098436 44099171 + 3.66667 NA Intergenic L1PA16|LINE|L1 432894 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 724.667-3 chrX 76555685 76556050 + 3.66667 NA Intergenic HUERS-P3-int|LTR|ERV1 128157 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 1085.17-3 chr6 44074325 44075069 + 3.66667 NA promoter-TSS (NR_125864) promoter-TSS (NR_125864) -45 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 630-4 chrX 140056566 140057161 + 3.66667 NA Intergenic Intergenic -34804 NM_001271560 389895 Hs.127679 NM_001271560 LOC389895 - chromosome 16 open reading frame 72-like protein-coding 1453-2 chr3 4981448 4982228 + 3.66667 NA intron (NM_003670, intron 4 of 4) intron (NM_003670, intron 4 of 4) -1877 NR_125916 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 974.001-3 chr8 104759629 104760296 + 3.66667 NA Intergenic Intergenic -170938 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 986.667 chr11 104151104 104151988 + 3.66667 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 12601 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 1223.33 chr4 40908398 40909337 + 3.66667 NA intron (NM_173075, intron 9 of 16) intron (NM_173075, intron 9 of 16) -51675 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 420.334-2 chr13 99900320 99900644 + 3.66667 NA intron (NR_104592, intron 8 of 9) intron (NR_104592, intron 8 of 9) 56683 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 775.5-2 chr11 70191505 70192172 + 3.66667 NA Intergenic Intergenic -11325 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 939.834 chr7 32347216 32347697 + 3.66667 NA intron (NM_001322059, intron 1 of 17) MLT1E1A|LTR|ERVL-MaLR -48128 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 914.167 chr5 33588567 33589348 + 3.66667 NA intron (NM_001324512, intron 15 of 21) L2c|LINE|L2 148181 NR_047678 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 866.501 chr5 7896831 7897266 + 3.66667 NA intron (NR_157177, intron 13 of 14) intron (NR_157177, intron 13 of 14) 27900 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 1643.16 chr20 21719364 21720588 + 3.66667 NA Intergenic Intergenic 14312 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 1463 chr8 122638630 122639381 + 3.66667 NA Intergenic Intergenic 55101 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 851.334 chr16 81890337 81890855 + 3.66667 NA intron (NM_002661, intron 10 of 32) intron (NM_002661, intron 10 of 32) 111305 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 1529.33 chr17 59753237 59754032 + 3.66667 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 45980 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 1288.67 chr12 7460558 7461242 + 3.66667 NA Intergenic L1PA13|LINE|L1 -16715 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 541 chr1 173202484 173202973 + 3.66667 NA intron (NM_003326, intron 1 of 2) L2a|LINE|L2 2804 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 739.833-2 chr3 42961567 42961963 + 3.66667 NA Intergenic Intergenic -17546 NM_001129908 729085 Hs.729533 NM_001129908 ENSG00000144649 GASK1A C3orf41|FAM198A golgi associated kinase 1A protein-coding 887.5 chr12 47032405 47032881 + 3.66667 NA Intergenic Intergenic -46960 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 875.834 chr20 51306714 51307365 + 3.66667 NA Intergenic Intergenic 145938 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 1171.17 chr7 7424126 7424810 + 3.66667 NA intron (NM_001037763, intron 25 of 34) intron (NM_001037763, intron 25 of 34) 111405 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 559.167-2 chr10 93352643 93353334 + 3.66667 NA intron (NM_013451, intron 32 of 53) intron (NM_013451, intron 32 of 53) 129346 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 1557 chr1 162847243 162848311 + 3.66667 NA Intergenic MER103C|DNA|hAT-Charlie 21038 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 799.166 chr3 94036827 94037551 + 3.66667 NA intron (NR_135621, intron 4 of 8) MER20|DNA|hAT-Charlie -8592 NM_001001850 415117 Hs.679768 NM_001001850 ENSG00000178750 STX19 - syntaxin 19 protein-coding 290.834-3 chr12 46675797 46675895 + 3.66667 NA Intergenic Intergenic 150151 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 578.667-3 chr6 133846629 133846813 + 3.66667 NA intron (NR_109982, intron 1 of 8) intron (NR_109982, intron 1 of 8) 25574 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 861.666 chr1 168439691 168440300 + 3.66667 NA Intergenic Intergenic -17339 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 647.001 chr10 104614409 104614899 + 3.66667 NA Intergenic Intergenic -26636 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 560.667-3 chr11 12888693 12889198 + 3.66667 NA intron (NM_021961, intron 9 of 12) intron (NM_021961, intron 9 of 12) 100603 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 1110.5-3 chrX 85544585 85545270 + 3.66667 NA Intergenic L1PA16|LINE|L1 -165262 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 458.5-3 chr2 10408275 10408575 + 3.66667 NA intron (NM_001258359, intron 2 of 4) intron (NM_001258359, intron 2 of 4) 38424 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 1057.67 chr3 52154452 52154904 + 3.66667 NA promoter-TSS (NM_001161580) promoter-TSS (NM_001161580) -255 NM_001161580 25886 Hs.476306 NM_015426 ENSG00000164087 POC1A PIX2|SOFT|WDR51A POC1 centriolar protein A protein-coding 961.667 chr21 26881131 26881881 + 3.66667 NA Intergenic Intergenic -36097 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 924.5 chr10 30392471 30393258 + 3.66667 NA Intergenic Intergenic -20957 NR_120609 729668 Hs.652158 NR_003524 GOLGA2P6 - GOLGA2 pseudogene 6 pseudo 298.334-4 chr3 120244401 120244521 + 3.66667 NA promoter-TSS (NM_153002) promoter-TSS (NM_153002) -166 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 733 chr11 75280076 75280530 + 3.66667 NA intron (NM_004041, intron 7 of 15) intron (NM_004041, intron 7 of 15) 39529 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 1443 chr10 49594017 49594775 + 3.66667 NA Intergenic AluSx3|SINE|Alu -14699 NM_020984 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 1356.33 chr3 151227542 151228175 + 3.66667 NA intron (NM_014879, intron 1 of 2) MER20|DNA|hAT-Charlie 21133 NM_001081455 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 669.167 chr11 66002136 66002510 + 3.66667 NA promoter-TSS (NM_001242483) promoter-TSS (NM_001242483) -166 NM_001242481 84285 Hs.425178 NM_032325 ENSG00000175376 EIF1AD OBELIX|haponin eukaryotic translation initiation factor 1A domain containing protein-coding 745.167 chr3 71652973 71653436 + 3.66667 NA Intergenic Intergenic -69215 NM_032682 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1436 chr7 27179644 27180366 + 3.66667 NA promoter-TSS (NR_037939) promoter-TSS (NR_037939) -144 NR_037939 3206 Hs.110637 NM_018951 ENSG00000253293 HOXA10 HOX1|HOX1.8|HOX1H|PL homeobox A10 protein-coding 1157.83-2 chr1 206606597 206607419 + 3.66667 NA intron (NM_006893, intron 4 of 14) L1ME3G|LINE|L1 5457 NM_006893 1939 Hs.497581 NM_006893 ENSG00000143486 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 608.333 chr12 14803531 14803917 + 3.66667 NA promoter-TSS (NM_175874) promoter-TSS (NM_175874) 54 NM_175874 144608 Hs.659951 NM_175874 ENSG00000182993 C12orf60 - chromosome 12 open reading frame 60 protein-coding 443.833-4 chr2 85285583 85285849 + 3.66667 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 42273 NM_001368095 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 2038.83-2 chr8 70834127 70835371 + 3.66667 NA Intergenic Intergenic 165410 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 629.833-2 chr1 35568661 35569314 + 3.66667 NA Intergenic L2c|LINE|L2 -4327 NM_178548 339488 Hs.567844 NM_178548 ENSG00000116819 TFAP2E AP2E transcription factor AP-2 epsilon protein-coding 837.834 chr15 59751623 59752130 + 3.66667 NA Intergenic Intergenic -62556 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 942.666-2 chr7 2555501 2556071 + 3.66667 NA promoter-TSS (NM_001350627) promoter-TSS (NM_001350627) -262 NR_146879 221927 Hs.520623 NM_152743 ENSG00000106009 BRAT1 BAAT1|C7orf27|NEDCAS|RMFSL BRCA1 associated ATM activator 1 protein-coding 972-2 chr20 5788287 5788829 + 3.66667 NA intron (NM_152504, intron 2 of 2) intron (NM_152504, intron 2 of 2) 38157 NM_001303479 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 754.999 chr11 35391611 35392504 + 3.66667 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 27501 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 864 chr1 161741447 161741945 + 3.66667 NA Intergenic Intergenic -8090 NM_007240 11266 Hs.416216 NM_007240 ENSG00000081721 DUSP12 DUSP1|YVH1 dual specificity phosphatase 12 protein-coding 951.667 chr11 86938645 86939471 + 3.66667 NA non-coding (NR_120591, exon 3 of 5) non-coding (NR_120591, exon 3 of 5) 16337 NM_012193 8322 Hs.591968 NM_012193 ENSG00000174804 FZD4 CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4 frizzled class receptor 4 protein-coding 897.833-2 chr6 99434775 99435514 + 3.66667 NA non-coding (NR_144345, exon 17 of 17) non-coding (NR_144345, exon 17 of 17) -9799 NM_001322412 25957 Hs.520287 NM_015491 ENSG00000132424 PNISR C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2 PNN interacting serine and arginine rich protein protein-coding 1127.5 chr19 45994893 45995408 + 3.66667 NA promoter-TSS (NM_001267723) promoter-TSS (NM_001267723) -317 NM_001267723 729440 Hs.515479 NM_001080402 ENSG00000104983 CCDC61 - coiled-coil domain containing 61 protein-coding 926.667 chr11 85590917 85591316 + 3.66667 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 36154 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 744.334-2 chr14 21977536 21978395 + 3.66667 NA Intergenic L1PA16|LINE|L1 -306948 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 691.167 chr17 40026911 40027471 + 3.66667 NA promoter-TSS (NR_106944) promoter-TSS (NR_106944) 454 NR_102369 101340251 NR_102369 ENSG00000238793 SNORD124 - small nucleolar RNA, C/D box 124 snoRNA 897 chr8 58807812 58808348 + 3.66667 NA intron (NM_014729, intron 8 of 8) intron (NM_014729, intron 8 of 8) -148227 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 488.334-3 chr2 134450969 134451448 + 3.66667 NA 3' UTR (NM_002410, exon 16 of 16) 3' UTR (NM_002410, exon 16 of 16) 197136 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 681.334-2 chr20 63786158 63786410 + 3.66667 NA intron (NM_001369741, intron 2 of 4) intron (NM_001369741, intron 2 of 4) 19219 NM_025224 140685 Hs.585028 NM_025224 ENSG00000130584 ZBTB46 BTBD4|BZEL|RINZF|ZNF340|dJ583P15.7|dJ583P15.8 zinc finger and BTB domain containing 46 protein-coding 1268.83-2 chr2 57759524 57760576 + 3.66667 NA Intergenic Intergenic -147601 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 1549.17 chr1 11336904 11337950 + 3.66667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 64229 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 606.667-2 chrX 53435926 53436481 + 3.66667 NA Intergenic L2a|LINE|L2 -1827 NM_004493 3028 Hs.171280 NM_004493 ENSG00000072506 HSD17B10 17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1 hydroxysteroid 17-beta dehydrogenase 10 protein-coding 756.001-2 chr15 55846157 55846713 + 3.66667 NA intron (NM_198400, intron 11 of 21) intron (NM_198400, intron 11 of 21) 70696 NM_001284340 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 879.834 chr6 35736266 35736780 + 3.66667 NA promoter-TSS (NM_001286576) promoter-TSS (NM_001286576) 424 NR_027117 285847 Hs.407190 NR_027117 LOC285847 - uncharacterized LOC285847 ncRNA 1047.83-2 chr17 58587076 58587882 + 3.66667 NA intron (NM_031272, intron 17 of 31) intron (NM_031272, intron 17 of 31) -43151 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 815.334-2 chr2 25851185 25852153 + 3.66667 NA intron (NM_018263, intron 1 of 11) intron (NM_018263, intron 1 of 11) -20768 NM_001369346 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 839.334 chr1 53278159 53278644 + 3.66667 NA intron (NM_004631, intron 4 of 18) MamRep564|Unknown|Unknown 39791 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 1132.5 chr11 36492658 36493554 + 3.66667 NA intron (NM_145803, intron 6 of 7) intron (NM_145803, intron 6 of 7) 17166 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 1175.33 chr14 69090068 69090800 + 3.66667 NA 3' UTR (NM_001284208, exon 7 of 7) 3' UTR (NM_001284208, exon 7 of 7) 62165 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 527.167-4 chr6 52652140 52652692 + 3.66667 NA Intergenic L1MD2|LINE|L1 -11985 NR_024405 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 865.834 chr10 70115948 70116618 + 3.66667 NA intron (NM_001198696, intron 7 of 8) intron (NM_001198696, intron 7 of 8) 16542 NM_032797 84883 Hs.650680 NM_032797 ENSG00000042286 AIFM2 AMID|PRG3 apoptosis inducing factor mitochondria associated 2 protein-coding 1085.67 chr10 104622452 104623694 + 3.66667 NA Intergenic L1MD1|LINE|L1 -18217 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 1621.83 chr11 66385746 66386802 + 3.66667 NA Intergenic AluSx3|SINE|Alu -13798 NM_001300869 3177 Hs.569017 NM_001532 ENSG00000174669 SLC29A2 DER12|ENT2|HNP36 solute carrier family 29 member 2 protein-coding 1755.67 chr2 230611131 230612121 + 3.66667 NA Intergenic Intergenic 88903 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 939.667-4 chr9 128702221 128702694 + 3.66667 NA promoter-TSS (NM_001317926) promoter-TSS (NM_001317926) -46 NM_001317926 29941 Hs.300485 NM_013355 ENSG00000160447 PKN3 UTDP4-1 protein kinase N3 protein-coding 917.334 chr4 105715529 105716115 + 3.66667 NA intron (NM_001031720, intron 1 of 11) intron (NM_001031720, intron 1 of 11) 5009 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 1391.67 chr1 219203010 219204198 + 3.66667 NA intron (NM_001300770, intron 3 of 4) intron (NM_001300770, intron 3 of 4) 28635 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 1176.83 chr5 180293200 180294050 + 3.66667 NA Intergenic Intergenic -1542 NM_139069 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 989.167 chr15 89647063 89647714 + 3.66667 NA intron (NM_198525, intron 6 of 18) intron (NM_198525, intron 6 of 18) 8079 NM_198525 374654 Hs.513134 NM_198525 ENSG00000166813 KIF7 ACLS|AGBK|HLS2|JBTS12|UNQ340 kinesin family member 7 protein-coding 841.001 chr11 9015442 9016185 + 3.66667 NA Intergenic Intergenic -11812 NM_020645 56675 Hs.523467 NM_020645 ENSG00000175352 NRIP3 C11orf14|NY-SAR-105 nuclear receptor interacting protein 3 protein-coding 784.834 chr12 32305155 32305568 + 3.66667 NA intron (NR_148725, intron 3 of 9) intron (NR_148725, intron 3 of 9) -94197 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 220.667-26 chr22 28112908 28112988 + 3.66667 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -192336 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 1672.67 chr19 49443105 49444137 + 3.66667 NA Intergenic CpG -2094 NM_020309 57030 Hs.375616 NM_020309 ENSG00000104888 SLC17A7 BNPI|VGLUT1 solute carrier family 17 member 7 protein-coding 842.334 chr10 74991271 74992156 + 3.66667 NA intron (NM_001370144, intron 11 of 15) intron (NM_001370144, intron 11 of 15) -30020 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 703.333 chr16 1723360 1723957 + 3.66667 NA intron (NM_001040439, intron 1 of 30) intron (NM_001040439, intron 1 of 30) -11327 NR_036138 100423012 NR_036138 ENSG00000265820 MIR3177 mir-3177 microRNA 3177 ncRNA 1161.17 chr11 67317274 67317814 + 3.66667 NA promoter-TSS (NR_024469) promoter-TSS (NR_024469) -295 NR_024469 100130987 Hs.664585 NR_024469 LOC100130987 - uncharacterized LOC100130987 ncRNA 1718.5 chr4 31370464 31371482 + 3.66667 NA Intergenic Intergenic -135571 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 440.167-3 chr11 65740693 65740858 + 3.66667 NA Intergenic MER66-int|LTR|ERV1 -19837 NM_032193 84153 Hs.718438 NM_032193 ENSG00000172922 RNASEH2C AGS3|AYP1 ribonuclease H2 subunit C protein-coding 355.333-5 chr5 60649417 60649582 + 3.66667 NA intron (NM_001145208, intron 2 of 9) intron (NM_001145208, intron 2 of 9) 50667 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 1131.17-2 chr5 96601720 96602305 + 3.66667 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -60025 NM_001190442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 1235 chr5 170267785 170268362 + 3.66667 NA intron (NM_005565, intron 8 of 20) intron (NM_005565, intron 8 of 20) 29704 NM_005565 3937 Hs.304475 NM_005565 ENSG00000043462 LCP2 SLP-76|SLP76 lymphocyte cytosolic protein 2 protein-coding 1521.17 chr7 47253682 47255148 + 3.66667 NA Intergenic CpG 210388 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 877.833-2 chr8 103344507 103345275 + 3.66667 NA Intergenic Intergenic -26647 NM_138455 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 779.166-2 chr8 54165901 54166626 + 3.66667 NA Intergenic Intergenic 31022 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 1108.83-2 chr4 167021297 167021999 + 3.66667 NA intron (NM_001204354, intron 2 of 9) intron (NM_001204354, intron 2 of 9) 212778 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 474-8 chr5 150458772 150459292 + 3.66667 NA Intergenic Intergenic -9293 NM_005617 6208 Hs.744846 NM_005617 ENSG00000164587 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 1188.83-2 chr3 120558734 120559777 + 3.66667 NA Intergenic Intergenic -37081 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 681.334-3 chr21 15592213 15592681 + 3.66667 NA Intergenic Intergenic -137487 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 758.333 chr22 37077546 37078011 + 3.66667 NA intron (NM_153609, intron 10 of 17) Charlie1b|DNA|hAT-Charlie 25875 NM_153609 164656 Hs.370885 NM_153609 ENSG00000187045 TMPRSS6 IRIDA transmembrane serine protease 6 protein-coding 601.167-4 chr5 88707236 88707536 + 3.66667 NA intron (NR_146284, intron 2 of 3) HERVL40-int|LTR|ERVL -16345 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 1694.67 chr1 240190517 240191503 + 3.66667 NA intron (NM_001348094, intron 4 of 14) intron (NM_001348094, intron 4 of 14) 99127 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 1121.33 chr15 93087593 93088400 + 3.66667 NA intron (NM_020211, intron 1 of 3) intron (NM_020211, intron 1 of 3) 527 NM_001166287 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 772-2 chr7 157273505 157274027 + 3.66667 NA Intergenic Intergenic -63238 NM_001363676 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 713.333-2 chr12 52279134 52279580 + 3.66667 NA intron (NM_001320198, intron 2 of 10) intron (NM_001320198, intron 2 of 10) 4712 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 416.5-3 chr13 91134345 91134643 + 3.66667 NA intron (NR_047004, intron 2 of 3) intron (NR_047004, intron 2 of 3) -44877 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 761.001 chr11 108655139 108655450 + 3.66667 NA Intergenic Intergenic -9775 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 1216.83-4 chr3 195850933 195851850 + 3.66667 NA intron (NR_134939, intron 1 of 1) intron (NR_134939, intron 1 of 1) 2837 NR_134940 101929697 Hs.551750 NR_134939 LINC01983 - long intergenic non-protein coding RNA 1983 ncRNA 814.001 chr10 37976437 37977226 + 3.66667 NA promoter-TSS (NR_138068) promoter-TSS (NR_138068) -184 NR_138062 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 1183.17-2 chr6 133512311 133513060 + 3.66667 NA intron (NR_109982, intron 6 of 8) intron (NR_109982, intron 6 of 8) 271186 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 1004-2 chr5 173616699 173617767 + 3.66667 NA promoter-TSS (NM_001159651) promoter-TSS (NM_001159651) -570 NM_001159651 91272 Hs.425091 NM_138369 ENSG00000145919 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 962.667-2 chr3 62201242 62201785 + 3.66667 NA exon (NM_002841, exon 11 of 30) exon (NM_002841, exon 11 of 30) 117434 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 881.501 chr10 120735439 120736202 + 3.66667 NA Intergenic Intergenic 115359 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 659.5 chr17 6665796 6666157 + 3.66667 NA Intergenic Alu|SINE|Alu 8257 NR_045985 100652883 Hs.549540 NR_045985 ALOX15P1 ALOX15P arachidonate 15-lipoxygenase pseudogene 1 pseudo 1033.67 chr12 62581903 62582423 + 3.66667 NA intron (NM_001278469, intron 32 of 35) intron (NM_001278469, intron 32 of 35) 21271 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 1353.5 chr18 49858612 49859265 + 3.66667 NA intron (NM_001080467, intron 29 of 39) intron (NM_001080467, intron 29 of 39) 44915 NR_003003 677769 NR_003003 ENSG00000267322 SCARNA17 U91 small Cajal body-specific RNA 17 ncRNA 793.834 chr12 57069387 57069841 + 3.66667 NA intron (NM_001130963, intron 3 of 8) intron (NM_001130963, intron 3 of 8) 9177 NM_001130963 23306 Hs.591040 NM_015257 ENSG00000166881 NEMP1 TMEM194|TMEM194A nuclear envelope integral membrane protein 1 protein-coding 776.833 chr11 44936364 44936873 + 3.66667 NA non-coding (NR_134612, exon 6 of 8) non-coding (NR_134612, exon 6 of 8) 13542 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 1073 chr17 41786442 41787023 + 3.66667 NA promoter-TSS (NM_001352773) promoter-TSS (NM_001352773) -21 NM_002230 3728 Hs.514174 NM_002230 ENSG00000173801 JUP CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 1017.67 chr7 121396151 121396906 + 3.66667 NA promoter-TSS (NM_014888) promoter-TSS (NM_014888) -160 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 1093 chr12 9813270 9814653 + 3.66667 NA intron (NR_159359, intron 1 of 5) L1M2|LINE|L1 -13520 NR_159360 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 953.501 chr21 31180498 31181159 + 3.66667 NA intron (NM_001353686, intron 15 of 27) intron (NM_001353686, intron 15 of 27) -19888 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 586 chr1 160078517 160079215 + 3.66667 NA Intergenic (TGA)n|Simple_repeat|Simple_repeat -2672 NM_004983 3765 Hs.66726 NM_004983 ENSG00000162728 KCNJ9 GIRK3|KIR3.3 potassium voltage-gated channel subfamily J member 9 protein-coding 642.833-2 chr3 27357614 27358112 + 3.66667 NA intron (NM_152534, intron 2 of 38) intron (NM_152534, intron 2 of 38) 11520 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 1177.83 chr12 22335408 22336056 + 3.66667 NA Intergenic CpG -1018 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 901.167 chr16 68902335 68902775 + 3.66667 NA intron (NM_024562, intron 9 of 17) intron (NM_024562, intron 9 of 17) 59024 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 617.5 chr10 95250126 95250395 + 3.66667 NA intron (NM_020992, intron 4 of 6) intron (NM_020992, intron 4 of 6) 40743 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 967.834 chrX 65595520 65596091 + 3.66667 NA Intergenic MIR3|SINE|MIR -43384 NR_033742 83957 Hs.652967 NR_033742 ENSG00000227942 FRMD8P1 - FERM domain containing 8 pseudogene 1 pseudo 934 chr9 36406799 36407639 + 3.66667 NA Intergenic Intergenic -6021 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 767.167 chr12 14629841 14630708 + 3.66667 NA intron (NM_004963, intron 19 of 26) intron (NM_004963, intron 19 of 26) -62391 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 914.833 chr22 40922581 40923289 + 3.66667 NA intron (NM_022098, intron 8 of 9) intron (NM_022098, intron 8 of 9) -28443 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 620-4 chr3 79361665 79362027 + 3.66667 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -49881 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 660.667 chr9 96218375 96218638 + 3.5 NA Intergenic MIRc|SINE|MIR -27957 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 1307.67 chr6 37171882 37172883 + 3.5 NA intron (NM_001243186, intron 4 of 5) intron (NM_001243186, intron 4 of 5) 2230 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 1043.67-3 chr2 21165305 21165951 + 3.5 NA Intergenic Intergenic 41642 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 1284 chr19 44570638 44571471 + 3.5 NA Intergenic MER20|DNA|hAT-Charlie -14137 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 507.834 chr14 23588931 23589517 + 3.5 NA Intergenic Intergenic -10434 NM_001146028 84502 Hs.597841 NM_032452 ENSG00000092051 JPH4 JP4|JPHL1 junctophilin 4 protein-coding 1262.33-2 chr20 54680746 54681970 + 3.5 NA Intergenic Intergenic 205765 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 671 chr12 74316940 74317602 + 3.5 NA Intergenic Intergenic -24640 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 1279-2 chr3 196252653 196254029 + 3.5 NA intron (NM_005017, intron 4 of 9) AluSx1|SINE|Alu 34385 NM_001312673 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 980.334 chr13 99441848 99442655 + 3.5 NA Intergenic Charlie4a|DNA|hAT-Charlie 57055 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 772.166 chr11 121249162 121249707 + 3.5 NA Intergenic Intergenic -43337 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 716.167 chr1 152001690 152002155 + 3.5 NA Intergenic Intergenic -8063 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 759.167 chr19 55631906 55632721 + 3.5 NA Intergenic MIR1_Amn|SINE|MIR -7738 NM_203374 147808 Hs.53996 NM_203374 ENSG00000179922 ZNF784 - zinc finger protein 784 protein-coding 635.167-4 chr19 6863173 6863814 + 3.5 NA Intergenic Intergenic -24086 NM_001256253 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 1315 chr22 30005006 30005818 + 3.5 NA intron (NM_153051, intron 9 of 18) intron (NM_153051, intron 9 of 18) -1637 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 2108.5 chr8 17576039 17577833 + 3.5 NA intron (NM_006207, intron 1 of 6) intron (NM_006207, intron 1 of 6) 503 NM_006207 5157 Hs.458573 NM_006207 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet derived growth factor receptor like protein-coding 936 chr1 33099392 33099888 + 3.5 NA intron (NM_001350399, intron 9 of 10) intron (NM_001350399, intron 9 of 10) 17462 NM_001350402 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 1024 chr1 219660868 219661337 + 3.5 NA Intergenic Intergenic -47957 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 383.833-3 chr16 84671959 84672709 + 3.5 NA Intergenic Intergenic 23823 NM_024731 79786 Hs.222731 NM_024731 ENSG00000135686 KLHL36 C16orf44 kelch like family member 36 protein-coding 485.166-4 chr5 149667661 149668120 + 3.5 NA Intergenic Tigger12c|DNA|TcMar-Tigger -62420 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 989.001 chr4 15729709 15730457 + 3.5 NA intron (NM_004334, intron 8 of 8) intron (NM_004334, intron 8 of 8) 27018 NM_004334 683 Hs.720344 NM_004334 ENSG00000109743 BST1 CD157 bone marrow stromal cell antigen 1 protein-coding 1190.5-2 chr1 212062803 212063275 + 3.5 NA intron (NM_001286229, intron 5 of 12) intron (NM_001286229, intron 5 of 12) -10988 NR_026911 100131205 Hs.126774 NR_026911 ENSG00000220749 RPL21P28 RPL21_8_160 ribosomal protein L21 pseudogene 28 pseudo 592.5-2 chr11 75723101 75723383 + 3.5 NA intron (NM_025098, intron 2 of 5) AluSq|SINE|Alu 5404 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 700.5 chr15 71801322 71801599 + 3.5 NA Intergenic Plat_L3|LINE|CR1 -9094 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 957.833 chr14 63134972 63135604 + 3.5 NA Intergenic L1MC5a|LINE|L1 -69155 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 930.667-2 chr9 36632636 36633319 + 3.5 NA intron (NM_001256691, intron 7 of 15) intron (NM_001256691, intron 7 of 15) 60082 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 1190.17 chr5 123670625 123671279 + 3.5 NA Intergenic (T)n|Simple_repeat|Simple_repeat 125535 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 1239-2 chr8 61095684 61096651 + 3.5 NA Intergenic Intergenic -128419 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 946.667 chr12 65983420 65984178 + 3.5 NA Intergenic Intergenic 39927 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 662.833-4 chrX 68511207 68511478 + 3.5 NA intron (NM_001195214, intron 1 of 5) intron (NM_001195214, intron 1 of 5) 12291 NM_173834 286451 Hs.82719 NM_173834 ENSG00000181704 YIPF6 FinGER6 Yip1 domain family member 6 protein-coding 1068.5 chr8 143281663 143282165 + 3.5 NA promoter-TSS (NR_120682) promoter-TSS (NR_120682) -214 NR_120682 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long non-coding RNA ncRNA 660.834 chr3 31132329 31132626 + 3.5 NA Intergenic Intergenic 29310 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 970.167 chr1 156126005 156126680 + 3.5 NA intron (NM_001257374, intron 1 of 12) intron (NM_001257374, intron 1 of 12) 172 NM_001257374 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 571.001 chr1 104647944 104648292 + 3.5 NA Intergenic Intergenic 575095 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 774.333 chr10 92434963 92435454 + 3.5 NA Intergenic Intergenic 16547 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 960.167 chr2 17670839 17671726 + 3.5 NA intron (NM_024624, intron 24 of 26) L1MC5|LINE|L1 82528 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 1153.67-3 chr4 30715941 30716980 + 3.5 NA Intergenic Intergenic -3909 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 545.166 chr5 79024278 79024701 + 3.5 NA intron (NM_013391, intron 13 of 15) intron (NM_013391, intron 13 of 15) -38531 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 1387-2 chr6 138001131 138002163 + 3.5 NA Intergenic Intergenic -55847 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 777.167 chr12 74537453 74537779 + 3.5 NA promoter-TSS (NM_001136262) promoter-TSS (NM_001136262) -219 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 1802 chr2 172465390 172466369 + 3.5 NA non-coding (NR_157573, exon 1 of 2) non-coding (NR_157573, exon 1 of 2) 143 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 975.666 chr18 36687967 36688538 + 3.5 NA intron (NM_001281740, intron 16 of 28) intron (NM_001281740, intron 16 of 28) -24834 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 294-12 chr21 36141361 36141666 + 3.5 NA non-coding (NR_038894, exon 3 of 3) non-coding (NR_038894, exon 3 of 3) 6434 NM_001236 874 Hs.154510 NM_001236 ENSG00000159231 CBR3 HEL-S-25|SDR21C2|hCBR3 carbonyl reductase 3 protein-coding 896.334 chr11 9613093 9613612 + 3.5 NA Intergenic Intergenic 38665 NM_001143976 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 776.167-2 chr5 16550269 16551089 + 3.5 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -41681 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 480-6 chr7 116137903 116138586 + 3.5 NA Intergenic Intergenic -72295 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 1232-2 chr4 47685869 47686441 + 3.5 NA intron (NM_006587, intron 6 of 21) intron (NM_006587, intron 6 of 21) 33486 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 450.667-2 chr2 165697923 165698113 + 3.5 NA Intergenic Intergenic 96229 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 561.333-2 chr3 37855354 37855822 + 3.5 NA intron (NR_110532, intron 1 of 5) intron (NR_110532, intron 1 of 5) 6192 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 1424.83 chr5 131417068 131417913 + 3.5 NA Intergenic Intergenic 153481 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 589.166 chr5 11267179 11267680 + 3.5 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 321488 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 603 chr12 8045839 8046793 + 3.5 NA intron (NM_018416, intron 6 of 10) L1MC5a|LINE|L1 13600 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 417-8 chrX 76278974 76279252 + 3.5 NA Intergenic L1MA8|LINE|L1 106051 NM_016500 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 859.667 chr11 79708020 79708960 + 3.5 NA Intergenic LTR41C|LTR|ERVL -267460 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 345.5-3 chr11 128831283 128831581 + 3.5 NA Intergenic Intergenic 11037 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 812.667-2 chr2 238256639 238257264 + 3.5 NA exon (NM_022817, exon 17 of 23) exon (NM_022817, exon 17 of 23) -16913 NM_001142853 55502 Hs.42949 NM_018645 ENSG00000144485 HES6 C-HAIRY1|HES-6|bHLHb41|bHLHc23 hes family bHLH transcription factor 6 protein-coding 600.167-4 chr4 110959476 110959819 + 3.5 NA Intergenic Intergenic -99000 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 1178.83-2 chr20 645474 646111 + 3.5 NA TTS (NM_080725) TTS (NM_080725) 7408 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 656.5 chr19 11587714 11588149 + 3.5 NA Intergenic Intergenic -8956 NM_001111035 54 Hs.1211 NM_001611 ENSG00000102575 ACP5 HPAP|TRACP5a|TRACP5b|TRAP|TrATPase acid phosphatase 5, tartrate resistant protein-coding 1219.83 chr14 58072575 58073402 + 3.5 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 79225 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 595.167-3 chr16 11532073 11532295 + 3.5 NA Intergenic AluSx1|SINE|Alu -4937 NM_001370704 400499 Hs.459937 NM_001370704 ENSG00000188897 LOC400499 - putative uncharacterized protein LOC400499 protein-coding 1693.67-2 chr5 55171988 55173252 + 3.5 NA promoter-TSS (NR_031572) promoter-TSS (NR_031572) -267 NR_031572 100313923 NR_031572 ENSG00000251856 MIR449C mir-449c microRNA 449c ncRNA 1232.17 chr4 81039785 81040866 + 3.5 NA intron (NM_001201, intron 1 of 2) intron (NM_001201, intron 1 of 2) 9617 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 1125 chr17 59914192 59914964 + 3.5 NA intron (NM_001272042, intron 3 of 13) intron (NM_001272042, intron 3 of 13) 21457 NR_161458 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 763.834 chr20 32789985 32790667 + 3.5 NA intron (NM_175848, intron 7 of 21) intron (NM_175848, intron 7 of 21) 10474 NM_175850 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 461-4 chr6 5402585 5402967 + 3.5 NA intron (NM_006567, intron 2 of 6) L1MC4a|LINE|L1 55299 NR_125847 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 673.501 chrX 154373399 154373677 + 3.5 NA intron (NM_001110556, intron 1 of 47) intron (NM_001110556, intron 1 of 47) 1096 NM_001110556 2316 Hs.195464 NM_001456 ENSG00000196924 FLNA ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD filamin A protein-coding 1104.33-2 chr4 70651625 70652364 + 3.5 NA Intergenic L1ME3Cz|LINE|L1 14283 NM_001368133 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 860.5 chr10 70879995 70880454 + 3.5 NA 3' UTR (NM_003901, exon 15 of 15) 3' UTR (NM_003901, exon 15 of 15) 7657 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 911 chr15 53962359 53963297 + 3.5 NA Intergenic Intergenic -15613 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 1302.17 chr8 13662075 13662968 + 3.5 NA Intergenic Intergenic 32831 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 756.501 chr7 25389470 25390164 + 3.5 NA Intergenic Intergenic -161331 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 1728.5-2 chr2 157335830 157336559 + 3.5 NA Intergenic Intergenic -8482 NM_001009959 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 638.667 chr1 151099721 151100064 + 3.5 NA intron (NM_001323912, intron 5 of 7) MIR|SINE|MIR 29131 NM_001323912 126626 Hs.15671 NM_144618 ENSG00000143458 GABPB2 GABPB-2 GA binding protein transcription factor subunit beta 2 protein-coding 846.333 chr3 4979986 4980869 + 3.5 NA promoter-TSS (NR_037903) promoter-TSS (NR_037903) -466 NR_125916 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 1509.5 chr18 59402312 59403391 + 3.5 NA Intergenic MIRc|SINE|MIR -43586 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 648.001 chr20 17431690 17432186 + 3.5 NA intron (NM_002594, intron 7 of 11) intron (NM_002594, intron 7 of 11) 99441 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 429.334-4 chr22 40498468 40498873 + 3.5 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -23130 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 778.001 chr14 60191334 60191826 + 3.5 NA Intergenic Intergenic -21716 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 567.5-2 chr17 47615678 47616105 + 3.5 NA intron (NM_001330257, intron 20 of 23) intron (NM_001330257, intron 20 of 23) -34028 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 952 chr3 157493501 157494240 + 3.5 NA intron (NM_024621, intron 2 of 13) intron (NM_024621, intron 2 of 13) 1636 NM_001167917 79674 Hs.658046 NM_024621 ENSG00000197415 VEPH1 MELT|VEPH ventricular zone expressed PH domain containing 1 protein-coding 531.501-2 chr3 184727442 184727699 + 3.5 NA intron (NR_160768, intron 2 of 4) intron (NR_160768, intron 2 of 4) 15327 NR_160768 107986163 NR_160768 LOC107986163 - uncharacterized LOC107986163 ncRNA 445-6 chr9 85671257 85671542 + 3.5 NA intron (NM_015239, intron 7 of 25) L1M5|LINE|L1 70630 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 670.167-2 chr5 133552703 133553126 + 3.5 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 59627 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 750.166-2 chr12 109713368 109713743 + 3.5 NA promoter-TSS (NM_032829) promoter-TSS (NM_032829) -270 NM_032829 84915 Hs.661785 NM_032829 ENSG00000139438 FAM222A C12orf34 family with sequence similarity 222 member A protein-coding 682.833-2 chr12 76791144 76791399 + 3.5 NA intron (NM_015336, intron 1 of 16) intron (NM_015336, intron 1 of 16) 27013 NM_001359626 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 486-2 chr8 37779770 37780070 + 3.5 NA TTS (NM_001349346) TTS (NM_001349346) -16963 NM_032777 25960 Hs.274136 NM_032777 ENSG00000020181 ADGRA2 GPR124|TEM5 adhesion G protein-coupled receptor A2 protein-coding 1229 chrX 103176241 103177193 + 3.5 NA Intergenic Intergenic -38375 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 868.5 chr8 119638501 119639393 + 3.5 NA promoter-TSS (NM_001040092) promoter-TSS (NM_001040092) -108 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 316.5 chr1 167533926 167534191 + 3.5 NA Intergenic Intergenic -15448 NM_198053 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 268.666-2 chr3 6994393 6994514 + 3.5 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -100436 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 1350.5 chr4 67909976 67910782 + 3.5 NA 3' UTR (NM_182606, exon 10 of 10) 3' UTR (NM_182606, exon 10 of 10) -26377 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 863.167 chr6 13574525 13575602 + 3.5 NA intron (NM_012241, intron 1 of 9) L2a|LINE|L2 462 NM_012241 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 1654 chr12 47837523 47838498 + 3.5 NA Intergenic MIR|SINE|MIR -18107 NM_001098416 51564 Hs.200063 NM_015401 ENSG00000061273 HDAC7 HD7|HD7A|HDAC7A histone deacetylase 7 protein-coding 302.667-8 chr4 74370991 74371085 + 3.5 NA intron (NM_001432, intron 1 of 4) MER20|DNA|hAT-Charlie 5893 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 791.167-3 chr2 25228885 25229213 + 3.5 NA non-coding (NR_135490, exon 24 of 24) non-coding (NR_135490, exon 24 of 24) 23082 NM_001320893 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 1068.33-2 chr12 81627364 81628025 + 3.5 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) -29323 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 691 chr15 27016987 27017507 + 3.5 NA intron (NM_001270873, intron 2 of 5) intron (NM_001270873, intron 2 of 5) 46066 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 624.834-2 chr1 147627725 147628228 + 3.5 NA Intergenic Intergenic 42548 NR_136636 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 737.834 chr11 103055237 103055651 + 3.5 NA 3' UTR (NM_032299, exon 8 of 8) 3' UTR (NM_032299, exon 8 of 8) 36716 NM_001318740 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 834.167 chr12 25130685 25131146 + 3.5 NA intron (NR_147910, intron 7 of 11) intron (NR_147910, intron 7 of 11) 64245 NM_001352066 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 385.5-5 chr3 197081242 197081445 + 3.5 NA intron (NM_001366216, intron 15 of 23) (TA)n|Simple_repeat|Simple_repeat -51526 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 1294.83 chr7 100852061 100852910 + 3.5 NA promoter-TSS (NM_001267812) promoter-TSS (NM_001267812) 129 NR_146550 105375430 Hs.638778 NR_146550 ENSG00000236305 SLC12A9-AS1 - SLC12A9 antisense RNA 1 ncRNA 990.5-3 chr3 39667985 39669038 + 3.5 NA Intergenic Intergenic -140403 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 1428.67 chr19 28736792 28737590 + 3.5 NA Intergenic Intergenic -9497 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 597.5-5 chr2 211583216 211583440 + 3.5 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 843032 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 907.5 chr12 6778978 6779666 + 3.5 NA TTS (NM_002286) TTS (NM_002286) 6802 NM_002286 3902 Hs.409523 NM_002286 ENSG00000089692 LAG3 CD223 lymphocyte activating 3 protein-coding 689.833 chr1 55022065 55022537 + 3.5 NA Intergenic Intergenic -17175 NM_174936 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 1214.5 chr5 146533159 146533716 + 3.5 NA Intergenic Intergenic -17324 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 529.167-2 chr9 121545920 121546367 + 3.5 NA Intergenic Intergenic -20959 NM_032552 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 552.834 chr12 54336430 54336802 + 3.5 NA promoter-TSS (NR_029894) promoter-TSS (NR_029894) -600 NR_029894 442892 NR_029894 ENSG00000199122 MIR148B MIRN148B|mir-148b microRNA 148b ncRNA 779.667-2 chr2 65573192 65573630 + 3.5 NA Intergenic (A)n|Simple_repeat|Simple_repeat -140812 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 1060 chr16 81004559 81005255 + 3.5 NA intron (NM_001351967, intron 1 of 4) intron (NM_001351967, intron 1 of 4) -1591 NM_001100625 55839 Hs.726537 NM_018455 ENSG00000166451 CENPN BM039|C16orf60|CENP-N|ICEN32 centromere protein N protein-coding 583.5-2 chr7 22001524 22001892 + 3.5 NA Intergenic Intergenic -55809 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 602.334 chr1 59903125 59903379 + 3.5 NA intron (NR_134981, intron 6 of 7) L3|LINE|CR1 23521 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 1081.17-2 chr2 1817440 1818119 + 3.5 NA intron (NM_015025, intron 21 of 24) intron (NM_015025, intron 21 of 24) -73264 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 220.667-40 chrX 147804118 147804207 + 3.5 NA Intergenic Intergenic 107655 NR_024502 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 784.667-3 chr11 57457084 57457731 + 3.5 NA Intergenic Intergenic -3121 NM_178570 349667 Hs.502618 NM_178570 ENSG00000186907 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor like 2 protein-coding 968.833-3 chr7 6322958 6323613 + 3.5 NA Intergenic Intergenic 25682 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 1711.33-3 chr4 138680964 138682223 + 3.5 NA Intergenic Intergenic 331053 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 1086.17-2 chr4 73653613 73654659 + 3.5 NA Intergenic Intergenic -33505 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 710.334 chr11 26649775 26650201 + 3.5 NA intron (NM_031418, intron 24 of 26) intron (NM_031418, intron 24 of 26) 72072 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 1590.5-2 chr2 85813757 85814935 + 3.5 NA promoter-TSS (NR_038888) promoter-TSS (NR_038888) -784 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 1369.5-3 chr7 6516059 6516858 + 3.5 NA intron (NM_001145118, intron 7 of 21) LTR13_|LTR|ERVK -32306 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 478.5 chr1 11894083 11894341 + 3.5 NA Intergenic Intergenic -13942 NR_002754 26829 NR_002754 ENSG00000199347 RNU5E-1 RNU5E|U5E RNA, U5E small nuclear 1 snRNA 1514.83 chr1 88998014 88998962 + 3.5 NA Intergenic Intergenic -5528 NM_001008662 56267 Hs.481898 NM_001008661 ENSG00000137944 KYAT3 CCBL2|KAT3|KATIII kynurenine aminotransferase 3 protein-coding 873.334 chr14 21106774 21107287 + 3.5 NA Intergenic Intergenic -2326 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 1014.5-3 chr5 164012646 164013503 + 3.5 NA Intergenic Intergenic 454328 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 424.5-12 chr4 42995496 42995909 + 3.5 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 102436 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 797.501 chr5 108748785 108749266 + 3.5 NA promoter-TSS (NM_001308038) promoter-TSS (NM_001308038) 77 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 813.334 chr10 35218241 35219137 + 3.5 NA Intergenic Intergenic 22787 NM_001267570 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 690.667-2 chr10 81019038 81019367 + 3.5 NA Intergenic Intergenic 369405 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 448.833-3 chr14 75306735 75307321 + 3.5 NA Intergenic ORSL|DNA|hAT-Tip100 12624 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 485.166 chr10 48289797 48290077 + 3.5 NA Intergenic MSTA|LTR|ERVL-MaLR -15241 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 606.501 chr4 72296094 72296523 + 3.5 NA intron (NM_014243, intron 18 of 21) intron (NM_014243, intron 18 of 21) 257176 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 1211.5-2 chr3 158727711 158728197 + 3.5 NA intron (NM_206963, intron 1 of 5) intron (NM_206963, intron 1 of 5) 4503 NM_206963 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 1045.67-2 chr7 43439732 43440663 + 3.5 NA intron (NM_001287059, intron 8 of 27) intron (NM_001287059, intron 8 of 27) 82345 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 902 chr15 48507402 48507886 + 3.5 NA intron (NM_000138, intron 15 of 65) intron (NM_000138, intron 15 of 65) 138144 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 831.001 chr12 101414457 101414903 + 3.5 NA Intergenic Intergenic -6860 NM_001301068 400 Hs.372616 NM_001177 ENSG00000120805 ARL1 ARFL1 ADP ribosylation factor like GTPase 1 protein-coding 891.5 chr14 74084320 74084987 + 3.5 NA promoter-TSS (NM_001278594) promoter-TSS (NM_001278594) -200 NM_001278594 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 941.5 chr2 170873147 170873626 + 3.5 NA Intergenic Intergenic -55091 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 1218.83 chr12 5003150 5003923 + 3.5 NA Intergenic L1MA9|LINE|L1 -40343 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 945 chr12 15522523 15523152 + 3.5 NA intron (NM_030667, intron 10 of 26) intron (NM_030667, intron 10 of 26) -23774 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 623-2 chr16 73288610 73288979 + 3.5 NA Intergenic Intergenic -98011 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 1130.33-2 chr10 100482269 100483002 + 3.5 NA exon (NM_003393, exon 6 of 6) exon (NM_003393, exon 6 of 6) 19626 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 1105.33 chr11 20355019 20355667 + 3.5 NA Intergenic MER5B|DNA|hAT-Charlie -8342 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 808.334 chr13 29362726 29363820 + 3.5 NA intron (NM_001033602, intron 6 of 13) intron (NM_001033602, intron 6 of 13) -65387 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 679.333 chr19 47247527 47247876 + 3.5 NA Intergenic Intergenic -8824 NM_015603 26093 Hs.227782 NM_015603 ENSG00000105321 CCDC9 - coiled-coil domain containing 9 protein-coding 796.333 chr18 62423256 62423554 + 3.5 NA Intergenic Intergenic 98095 NM_001278268 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 731.333 chr4 154559334 154559977 + 3.5 NA Intergenic Intergenic -3325 NM_005141 2244 Hs.300774 NM_005141 ENSG00000171564 FGB HEL-S-78p fibrinogen beta chain protein-coding 1011.67 chr7 52018157 52018851 + 3.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -625248 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 1649.5-2 chr7 130758088 130759072 + 3.5 NA Intergenic Intergenic -24547 NM_138693 136259 Hs.125240 NM_138693 ENSG00000266265 KLF14 BTEB5 Kruppel like factor 14 protein-coding 714.333-2 chr3 138417448 138417738 + 3.5 NA Intergenic Intergenic -16980 NR_136409 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 916.501 chrX 24752343 24752812 + 3.5 NA intron (NM_016937, intron 26 of 36) intron (NM_016937, intron 26 of 36) 8136 NR_003007 677773 Hs.689695 NR_003007 ENSG00000251869 SCARNA23 ACA12 small Cajal body-specific RNA 23 ncRNA 446.167-6 chr8 117885547 117885949 + 3.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 35165 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 596-4 chr3 132535966 132536147 + 3.5 NA intron (NM_001329126, intron 56 of 56) MER119|DNA|hAT-Charlie -61214 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 1072-3 chr6 66925855 66926509 + 3.5 NA Intergenic HUERS-P3-int|LTR|ERV1 -1129169 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 636-2 chr3 151839645 151839928 + 3.5 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) 25670 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 1152.17 chr17 60569419 60570191 + 3.5 NA intron (NR_126009, intron 2 of 3) intron (NR_126009, intron 2 of 3) 5259 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 690.666-2 chr7 137626638 137627011 + 3.5 NA intron (NM_001321710, intron 6 of 32) intron (NM_001321710, intron 6 of 32) 219508 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 524.833 chr10 25283395 25283647 + 3.5 NA intron (NM_020752, intron 2 of 10) MER85|DNA|PiggyBac -107245 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 973.666-2 chr7 48336974 48337711 + 3.5 NA intron (NM_152701, intron 28 of 61) MIRb|SINE|MIR 165884 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 735.833-5 chr7 4744867 4745293 + 3.5 NA intron (NM_001037165, intron 2 of 8) intron (NM_001037165, intron 2 of 8) -30543 NM_001364858 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 subunit zeta 1 protein-coding 631.666 chr1 160607225 160607536 + 3.5 NA TTS (NR_104400) TTS (NR_104400) -27864 NM_001184882 8832 Hs.398093 NM_003874 ENSG00000066294 CD84 LY9B|SLAMF5|hCD84|mCD84 CD84 molecule protein-coding 887.832 chr12 94133991 94134488 + 3.5 NA Intergenic Intergenic -14338 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 944.834 chr1 205485418 205485927 + 3.5 NA Intergenic Intergenic -18997 NM_002596 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 1029.33 chr15 33021572 33022177 + 3.5 NA intron (NM_001277313, intron 6 of 20) intron (NM_001277313, intron 6 of 20) 46300 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 757.333-2 chr9 132259055 132259600 + 3.5 NA Intergenic Intergenic 95529 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 1068.33 chr12 48716568 48717121 + 3.5 NA promoter-TSS (NM_001277842) promoter-TSS (NM_001277842) -137 NM_001277842 904 Hs.92308 NM_001240 ENSG00000129315 CCNT1 CCNT|CYCT1|HIVE1 cyclin T1 protein-coding 1231.17-2 chr2 179751186 179752165 + 3.5 NA intron (NM_001352809, intron 3 of 10) intron (NM_001352809, intron 3 of 10) -5165 NR_148059 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 1190.33 chr17 70629696 70630573 + 3.5 NA Intergenic Intergenic 460599 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 484.333-3 chr3 114400618 114401029 + 3.5 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -17181 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 334.5-15 chr3 66822291 66822518 + 3.5 NA Intergenic Intergenic -84068 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 576-3 chr7 102390732 102391188 + 3.5 NA intron (NR_038967, intron 4 of 8) intron (NR_038967, intron 4 of 8) -5403 NM_024653 79706 Hs.722104 NM_024653 ENSG00000128563 PRKRIP1 C114|KRBOX3 PRKR interacting protein 1 protein-coding 763.667 chr2 230987346 230987678 + 3.5 NA non-coding (NR_033879, exon 5 of 6) non-coding (NR_033879, exon 5 of 6) 8520 NR_033879 348761 Hs.404807 NR_033879 ENSG00000238062 SPATA3-AS1 - SPATA3 antisense RNA 1 (head to head) ncRNA 855.333 chr8 26670676 26670979 + 3.5 NA Intergenic Intergenic 92422 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 1311.17 chr2 36770254 36771273 + 3.5 NA intron (NM_001177969, intron 7 of 14) intron (NM_001177969, intron 7 of 14) 74056 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 819.167 chr15 38707448 38707968 + 3.5 NA Intergenic (TTTATAA)n|Simple_repeat|Simple_repeat 11110 NR_160786 918.999 chr4 41214707 41215558 + 3.5 NA promoter-TSS (NM_004307) promoter-TSS (NM_004307) -590 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 623 chr1 89455390 89455728 + 3.5 NA Intergenic Intergenic 47880 NR_003133 400759 Hs.661968 NR_003133 ENSG00000225492 GBP1P1 - guanylate binding protein 1 pseudogene 1 pseudo 1054.83 chr22 22877409 22878187 + 3.5 NA Intergenic Intergenic -8469 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 1367 chr2 66428794 66429793 + 3.5 NA intron (NR_046438, intron 3 of 3) intron (NR_046438, intron 3 of 3) 4177 NR_046438 730198 Hs.526753 NR_046438 MEIS1-AS3 - MEIS1 antisense RNA 3 ncRNA 955.5-2 chr17 47776509 47776968 + 3.5 NA Intergenic Intergenic 43502 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 489.167-2 chr4 114659189 114659817 + 3.5 NA intron (NM_003360, intron 1 of 4) intron (NM_003360, intron 1 of 4) 2744 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 1604.33 chr3 57099824 57100710 + 3.5 NA intron (NM_001318864, intron 12 of 13) intron (NM_001318864, intron 12 of 13) -20999 NM_001128615 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 471.667-3 chr3 115147661 115148033 + 3.5 NA promoter-TSS (NM_001348803) promoter-TSS (NM_001348803) -559 NM_001348801 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 997.5 chr20 50169301 50169780 + 3.5 NA Intergenic Intergenic -3030 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 771.5-2 chr9 36023163 36023842 + 3.5 NA Intergenic Intergenic -13411 NM_001316348 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 1037.5 chr3 184017568 184017987 + 3.5 NA intron (NR_135125, intron 1 of 6) CpG 107 NM_005688 10057 Hs.368563 NM_005688 ENSG00000114770 ABCC5 ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 ATP binding cassette subfamily C member 5 protein-coding 992.334-2 chr20 59222618 59223450 + 3.5 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 32014 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 742.499-2 chr5 132089943 132090561 + 3.5 NA Intergenic HERV16-int|LTR|ERVL 16463 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 CSF|GMCSF colony stimulating factor 2 protein-coding 1028.33 chr11 18731864 18732737 + 3.5 NA intron (NM_001278236, intron 12 of 14) intron (NM_001278236, intron 12 of 14) -6112 NR_160413 283284 Hs.434152 NM_173588 ENSG00000179057 IGSF22 IGFN2 immunoglobulin superfamily member 22 protein-coding 1166.5-3 chr2 85552034 85552795 + 3.5 NA intron (NM_001142269, intron 9 of 13) intron (NM_001142269, intron 9 of 13) 9079 NM_001311312 2677 Hs.77719 NM_000821 ENSG00000115486 GGCX VKCFD1 gamma-glutamyl carboxylase protein-coding 739.667 chr2 31170311 31170900 + 3.5 NA Intergenic Intergenic -32165 NM_001329096 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 1194 chr10 67665751 67666946 + 3.5 NA promoter-TSS (NM_001291133) promoter-TSS (NM_001291133) -663 NM_001127384 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 692.667 chr1 109089308 109089620 + 3.5 NA Intergenic Intergenic -1300 NR_136242 56900 Hs.82933 NM_020141 ENSG00000215717 TMEM167B AD-020|C1orf119 transmembrane protein 167B protein-coding 840.667-2 chr3 11651971 11652653 + 3.5 NA intron (NM_014667, intron 2 of 5) intron (NM_014667, intron 2 of 5) -8397 NM_001128219 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 944.667 chr2 26145072 26145648 + 3.5 NA Intergenic Intergenic -27728 NM_001168241 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 887.5-2 chr14 28609346 28609857 + 3.5 NA Intergenic Intergenic 155718 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 448.333 chr1 156767182 156767415 + 3.5 NA promoter-TSS (NM_005973) promoter-TSS (NM_005973) -237 NM_005973 5546 Hs.516948 NM_005973 ENSG00000143294 PRCC RCCP1|TPRC proline rich mitotic checkpoint control factor protein-coding 772.5 chr22 36978200 36978653 + 3.5 NA Intergenic Intergenic 13178 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 808.167-3 chr8 142738630 142739456 + 3.5 NA Intergenic Intergenic 3363 NM_020427 57152 Hs.103505 NM_020427 ENSG00000126233 SLURP1 ANUP|ARS|ArsB|LY6-MT|LY6LS|MDM secreted LY6/PLAUR domain containing 1 protein-coding 714.666-2 chr15 33737322 33737874 + 3.5 NA intron (NM_001243996, intron 49 of 102) intron (NM_001243996, intron 49 of 102) -230899 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 550-3 chr14 77068409 77068863 + 3.5 NA TTS (NR_110553) TTS (NR_110553) 7555 NR_110553 102724190 Hs.562528 NR_110553 ENSG00000258819 LINC02289 - long intergenic non-protein coding RNA 2289 ncRNA 993.167 chr14 24090368 24090993 + 3.5 NA intron (NM_006177, intron 1 of 3).2 intron (NM_006177, intron 1 of 3).2 -3631 NM_001018073 5106 Hs.75812 NM_004563 ENSG00000100889 PCK2 PEPCK|PEPCK-M|PEPCK2 phosphoenolpyruvate carboxykinase 2, mitochondrial protein-coding 860.834 chr10 112140058 112141067 + 3.5 NA Intergenic Intergenic 43203 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 1406.33 chr10 17607131 17607918 + 3.5 NA intron (NM_014241, intron 1 of 6) intron (NM_014241, intron 1 of 6) 9850 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 791 chr1 28736310 28736939 + 3.5 NA promoter-TSS (NM_016258) promoter-TSS (NM_016258) 3 NM_001173128 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 1140.5 chr1 109643112 109643856 + 3.5 NA Intergenic CpG -12592 NR_024538 2948 Hs.348387 NM_000850 ENSG00000168765 GSTM4 GSTM4-4|GTM4 glutathione S-transferase mu 4 protein-coding 1586.33 chr11 91248103 91249139 + 3.5 NA Intergenic Intergenic -379419 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 991.667 chr10 60444368 60445100 + 3.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -54859 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 630-2 chr20 44683712 44683941 + 3.5 NA Intergenic MIRb|SINE|MIR -12087 NR_034104 79015 Hs.671450 NM_024049 ENSG00000283440 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 756.999 chr11 13210321 13210932 + 3.5 NA Intergenic Intergenic -66026 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 414.334 chr10 108204449 108204724 + 3.5 NA Intergenic Intergenic -135293 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 1540.83 chr1 149887973 149888849 + 3.5 NA promoter-TSS (NM_175065) promoter-TSS (NM_175065) -495 NM_175065 317772 Hs.664173 NM_175065 ENSG00000184270 HIST2H2AB H2AB histone cluster 2 H2A family member b protein-coding 1065-2 chr3 44323341 44323811 + 3.5 NA intron (NM_001145030, intron 18 of 19) intron (NM_001145030, intron 18 of 19) -14543 NM_001029840 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 697-4 chr3 72818076 72818563 + 3.5 NA intron (NM_018130, intron 6 of 10) L1MC5|LINE|L1 30126 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 1042.83-4 chr20 9617823 9618533 + 3.5 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -103180 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 1300.17-2 chr7 116591373 116592279 + 3.5 NA intron (NR_120506, intron 2 of 4) intron (NR_120506, intron 2 of 4) 22994 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 841 chr2 44390016 44390393 + 3.5 NA intron (NM_024766, intron 2 of 10) intron (NM_024766, intron 2 of 10) 28257 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 901 chr10 21269775 21270366 + 3.5 NA Intergenic Intergenic 95768 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 1064.67-3 chr2 157628909 157629577 + 3.5 NA promoter-TSS (NM_001111033) promoter-TSS (NM_001111033) -379 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 970.834-2 chr3 42780629 42781267 + 3.5 NA Intergenic Intergenic -7695 NM_144719 152206 Hs.604182 NM_144719 ENSG00000244607 CCDC13 - coiled-coil domain containing 13 protein-coding 959.168 chr12 7092289 7092863 + 3.5 NA promoter-TSS (NM_001733) promoter-TSS (NM_001733) -131 NM_001733 715 Hs.524224 NM_001733 ENSG00000159403 C1R EDSPD1 complement C1r protein-coding 645.667-2 chr4 90419041 90419405 + 3.5 NA intron (NM_207491, intron 4 of 7) intron (NM_207491, intron 4 of 7) 184192 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 496.333-2 chr19 3108862 3109118 + 3.5 NA intron (NM_002067, intron 1 of 6) MLT1F1|LTR|ERVL-MaLR 14628 NM_002067 2767 Hs.650575 NM_002067 ENSG00000088256 GNA11 FBH|FBH2|FHH2|GNA-11|HHC2|HYPOC2 G protein subunit alpha 11 protein-coding 595.666 chr11 93234487 93235012 + 3.5 NA Intergenic Intergenic -36758 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 1313.17-2 chr14 83463325 83464296 + 3.5 NA Intergenic Intergenic 821178 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 792.333 chr4 23135620 23136189 + 3.5 NA Intergenic Intergenic 421815 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 775.833 chr12 59113691 59114161 + 3.5 NA Intergenic LTR41B|LTR|ERVL -193388 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 661-2 chr1 211135100 211135863 + 3.5 NA Intergenic Intergenic -1333 NM_172362 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 1268.5 chr9 38160391 38161031 + 3.5 NA Intergenic L1ME3F|LINE|L1 -91484 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 508.167 chr1 175520419 175520848 + 3.5 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) 222962 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 654.833 chr18 23131360 23132202 + 3.5 NA Intergenic MIRc|SINE|MIR -2783 NM_001256438 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 663.667 chr1 205524440 205524705 + 3.5 NA intron (NM_212503, intron 4 of 15) intron (NM_212503, intron 4 of 15) 19903 NM_212502 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 726.334 chr4 6250440 6250871 + 3.5 NA Intergenic Intergenic -19195 NM_001145853 7466 Hs.518602 NM_006005 ENSG00000109501 WFS1 CTRCT41|WFRS|WFS|WFSL wolframin ER transmembrane glycoprotein protein-coding 861.667 chr12 117154858 117155465 + 3.5 NA intron (NM_015002, intron 11 of 11) intron (NM_015002, intron 11 of 11) 35309 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 978.168 chr6 152552536 152553099 + 3.5 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 84034 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 759.5-2 chr11 44093874 44094815 + 3.5 NA Intergenic Intergenic -1205 NM_207122 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 618.834-2 chr17 40218869 40219357 + 3.5 NA promoter-TSS (NM_133264) promoter-TSS (NM_133264) -191 NM_133264 147179 Hs.421622 NM_133264 ENSG00000171475 WIPF2 WICH|WIRE WAS/WASL interacting protein family member 2 protein-coding 1134.17-2 chr6 125753527 125754473 + 3.5 NA intron (NM_012259, intron 3 of 4) intron (NM_012259, intron 3 of 4) 4368 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 1213.17-3 chr4 56544444 56545455 + 3.5 NA intron (NM_001256475, intron 1 of 8) CpG 14343 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 1298.33 chr2 170815413 170816371 + 3.5 NA promoter-TSS (NM_000817) promoter-TSS (NM_000817) -798 NM_013445 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 903.333 chr9 21709424 21710147 + 3.5 NA Intergenic MIR3|SINE|MIR -92851 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 1793-2 chr5 110625198 110626671 + 3.5 NA intron (NM_001039763, intron 6 of 13) intron (NM_001039763, intron 6 of 13) 100737 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 1040 chr13 49847929 49848601 + 3.5 NA Intergenic Intergenic -42144 NR_003268 220429 Hs.448219 NR_003268 ENSG00000181358 CTAGE10P - CTAGE family member 10, pseudogene pseudo 471.167-3 chr18 47756557 47756803 + 3.5 NA Intergenic Intergenic 173979 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 1173-4 chr5 156816034 156816669 + 3.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -33944 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 702.5-2 chr9 18442601 18443332 + 3.5 NA Intergenic Intergenic -31187 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 402.667-14 chr22 44975539 44975870 + 3.5 NA intron (NM_001284296, intron 2 of 13) intron (NM_001284296, intron 2 of 13) 27915 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 1352.67 chr8 84604526 84605404 + 3.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -100962 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 355.667-3 chr19 1240499 1240787 + 3.5 NA Intergenic Intergenic -1108 NM_001687 513 Hs.418668 NM_001687 ENSG00000099624 ATP5F1D ATP5D|MC5DN5 ATP synthase F1 subunit delta protein-coding 1094.17-2 chr6 33744124 33744991 + 3.5 NA intron (NM_001142883, intron 1 of 6) intron (NM_001142883, intron 1 of 6) 2348 NM_054111 117283 Hs.17253 NM_054111 ENSG00000161896 IP6K3 IHPK3|INSP6K3 inositol hexakisphosphate kinase 3 protein-coding 1190.83 chr1 23184488 23185090 + 3.5 NA Intergenic Intergenic 9940 NM_000864 3352 Hs.121482 NM_000864 ENSG00000179546 HTR1D 5-HT1D|HT1DA|HTR1DA|HTRL|RDC4 5-hydroxytryptamine receptor 1D protein-coding 1077.17-2 chr2 97699927 97700633 + 3.5 NA intron (NR_038386, intron 8 of 9) LTR85a|LTR|Gypsy? -13288 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 622.334-2 chr9 110452149 110452402 + 3.5 NA intron (NM_153366, intron 22 of 47) intron (NM_153366, intron 22 of 47) -114391 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 875-2 chr14 81452907 81453804 + 3.5 NA Intergenic Intergenic -3198 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 297.667-8 chr12 110431489 110431852 + 3.5 NA Intergenic AluY|SINE|Alu 18667 NM_001278556 10094 Hs.524741 NM_001278556 ENSG00000111229 ARPC3 ARC21|p21-Arc actin related protein 2/3 complex subunit 3 protein-coding 885.667-2 chr5 122192833 122193397 + 3.5 NA Intergenic Intergenic 32939 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 782 chr6 129936152 129936965 + 3.5 NA Intergenic MIR3|SINE|MIR -75243 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 841.999 chr11 63738714 63739277 + 3.5 NA intron (NM_001265589, intron 3 of 8) intron (NM_001265589, intron 3 of 8) 29780 NM_001144936 65998 Hs.191073 NM_001144936 ENSG00000188070 C11orf95 - chromosome 11 open reading frame 95 protein-coding 1247.83 chr3 53113714 53114406 + 3.5 NA intron (NM_052859, intron 6 of 12) intron (NM_052859, intron 6 of 12) 16375 NM_052859 91869 Hs.631910 NM_052859 ENSG00000163933 RFT1 CDG1N RFT1 homolog protein-coding 551 chr4 164012694 164013083 + 3.5 NA intron (NM_001166373, intron 2 of 7) L1MA4|LINE|L1 184823 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 1586.17 chr4 95155700 95156597 + 3.5 NA 3' UTR (NM_001203, exon 13 of 13) 3' UTR (NM_001203, exon 13 of 13) 64657 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 664.167 chr15 100341819 100342590 + 3.5 NA promoter-TSS (NM_139057) promoter-TSS (NM_139057) -229 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 1261.5-2 chr8 88320360 88321104 + 3.5 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 6751 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 913.999 chr6 154155817 154156315 + 3.5 NA 3' UTR (NM_001130700, exon 12 of 12) 3' UTR (NM_001130700, exon 12 of 12) 66304 NM_001285528 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 528-2 chr14 55557219 55557434 + 3.5 NA Intergenic MamRTE1|LINE|RTE-BovB 22766 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 869.666 chrX 72126548 72127148 + 3.5 NA TTS (NM_001024455) TTS (NM_001024455) 5067 NM_001024455 340526 Hs.512180 NM_001024455 ENSG00000242732 RTL5 6430402L03Rik|MAR5|MART5|RGAG4|SIRH8 retrotransposon Gag like 5 protein-coding 909-2 chrX 131752680 131753277 + 3.5 NA intron (NR_026975, intron 9 of 12) intron (NR_026975, intron 9 of 12) 77665 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 812.667 chr1 206658243 206658692 + 3.5 NA Intergenic Intergenic 22931 NM_001004023 8444 Hs.164267 NM_003582 ENSG00000143479 DYRK3 DYRK5|RED|REDK|hYAK3-2 dual specificity tyrosine phosphorylation regulated kinase 3 protein-coding 1053.83-3 chr2 179410784 179411276 + 3.5 NA Intergenic Intergenic -146198 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 924.833-2 chr5 132883052 132883875 + 3.5 NA exon (NM_014423, exon 20 of 21) exon (NM_014423, exon 20 of 21) 9795 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 679-2 chr18 3233879 3234206 + 3.5 NA Intergenic MIR|SINE|MIR -13440 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 1127.83-2 chr2 119476087 119476661 + 3.5 NA promoter-TSS (NR_147846) promoter-TSS (NR_147846) -80 NR_147846 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 1207.17 chr1 91282580 91283150 + 3.5 NA intron (NM_001017975, intron 30 of 38) intron (NM_001017975, intron 30 of 38) 121972 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 697.167 chr3 179104965 179105240 + 3.5 NA intron (NR_125401, intron 2 of 2) intron (NR_125401, intron 2 of 2) -33293 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 1122.67-2 chr8 100846894 100847730 + 3.5 NA Intergenic Intergenic 103259 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 929.334 chr11 59135633 59136348 + 3.5 NA intron (NR_110184, intron 3 of 3) intron (NR_110184, intron 3 of 3) -6756 NM_001142520 63901 Hs.150651 NM_022074 ENSG00000166801 FAM111A GCLEB|KCS2 family with sequence similarity 111 member A protein-coding 556.5-4 chr3 108914959 108915454 + 3.5 NA intron (NM_005459, intron 3 of 3) intron (NM_005459, intron 3 of 3) 38640 NM_001363884 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 686-2 chr18 72762289 72762766 + 3.5 NA intron (NR_148694, intron 7 of 11) intron (NR_148694, intron 7 of 11) 90855 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 962.666 chr17 62968268 62969080 + 3.5 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 2439 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 1097-3 chr7 90262612 90263309 + 3.5 NA intron (NM_001039706, intron 4 of 22) intron (NM_001039706, intron 4 of 22) 17786 NM_001363438 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 478.167 chr11 83071728 83072098 + 3.5 NA promoter-TSS (NM_001286060) promoter-TSS (NM_001286060) -16 NM_001286060 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 1173.33-2 chr3 128680666 128681329 + 3.5 NA Intergenic CpG -30179 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 432.834-2 chr10 53895821 53896006 + 3.5 NA intron (NM_001354411, intron 27 of 34) MIRb|SINE|MIR -590317 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 735.833-3 chr12 69253893 69254388 + 3.5 NA intron (NM_007007, intron 3 of 9) L2a|LINE|L2 14571 NM_007007 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 1043.83 chr4 82268721 82269190 + 3.5 NA Intergenic Intergenic 105036 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 484.333 chr1 17406292 17406572 + 3.5 NA TTS (NM_018715) TTS (NM_018715) 32104 NM_001136204 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 821.667-2 chr12 32365268 32365968 + 3.5 NA intron (NM_001354186, intron 9 of 10) intron (NM_001354186, intron 9 of 10) -33940 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 429.833 chr1 247684756 247685074 + 3.5 NA Intergenic L1MA8|LINE|L1 -11874 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 595.833-2 chr5 78886575 78887044 + 3.5 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 98501 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 436.5-7 chr8 108245601 108245994 + 3.5 NA intron (NM_001568, intron 1 of 12) L2a|LINE|L2 2920 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 857.5 chr4 158255902 158256394 + 3.5 NA TTS (NM_018342) TTS (NM_018342) 45662 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 681.667-2 chrX 37926487 37926908 + 3.5 NA Intergenic Intergenic -64082 NM_012274 25763 Hs.122959 NM_012274 ENSG00000187516 HYPM CXorf27|HIP17 huntingtin interacting protein M protein-coding 1028.17 chr12 56987518 56987943 + 3.5 NA Intergenic Intergenic -6762 NM_007264 11318 Hs.483909 NM_007264 ENSG00000166856 GPR182 7TMR|ADMR|AM-R|AMR|G10D|L1-R|gamrh|hrhAMR G protein-coupled receptor 182 protein-coding 817.667 chr1 230641923 230642780 + 3.5 NA promoter-TSS (NM_001145036) promoter-TSS (NM_001145036) -130 NM_007357 22796 Hs.211800 NM_007357 ENSG00000135775 COG2 CDG2Q|LDLC component of oligomeric golgi complex 2 protein-coding 1007.5-2 chr8 26088420 26089143 + 3.5 NA Intergenic Intergenic -43368 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 831.5 chr1 62135665 62136011 + 3.5 NA intron (NM_001350145, intron 41 of 43) intron (NM_001350145, intron 41 of 43) -56982 NR_036059 100422946 NR_036059 ENSG00000283690 MIR3116-2 - microRNA 3116-2 ncRNA 1054.5 chr8 67820287 67821152 + 3.5 NA Intergenic L1PB4|LINE|L1 -74359 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 638-2 chr2 62705326 62705712 + 3.5 NA promoter-TSS (NM_001354221) promoter-TSS (NM_001354221) -105 NM_001354212 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 1313.5 chr12 5745046 5745871 + 3.5 NA intron (NM_001278596, intron 11 of 25) intron (NM_001278596, intron 11 of 25) 199801 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 695.667 chr17 34420076 34420724 + 3.5 NA Intergenic Intergenic -57167 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 781.833 chr1 86473602 86474243 + 3.5 NA intron (NM_001285, intron 3 of 13) intron (NM_001285, intron 3 of 13) 4995 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 1445.66 chr2 172103557 172104266 + 3.5 NA intron (NR_126376, intron 1 of 4) intron (NR_126376, intron 1 of 4) 905 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 1216.83-5 chrX 80876825 80877490 + 3.5 NA Intergenic Intergenic -67280 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 1177.83-3 chr5 174311904 174312729 + 3.5 NA Intergenic CpG -24038 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 270-32 chr5 131110130 131110236 + 3.5 NA Intergenic Intergenic 55073 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 1059-2 chr4 155795843 155796635 + 3.5 NA intron (NM_001291951, intron 8 of 14) intron (NM_001291951, intron 8 of 14) 37218 NM_001291954 2983 Hs.77890 NM_000857 ENSG00000061918 GUCY1B1 GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3 guanylate cyclase 1 soluble subunit beta 1 protein-coding 1777.33 chr7 100704886 100706051 + 3.5 NA promoter-TSS (NM_005837) promoter-TSS (NM_005837) -653 NM_005837 10248 Hs.416994 NM_005837 ENSG00000172336 POP7 0610037N12Rik|RPP2|RPP20 POP7 homolog, ribonuclease P/MRP subunit protein-coding 598.5 chr10 32207432 32207872 + 3.5 NA Intergenic Intergenic 139506 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 501.5-6 chr6 159134663 159135100 + 3.5 NA Intergenic Intergenic -34519 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 1502-2 chrX 83759179 83760745 + 3.5 NA Intergenic Intergenic -101164 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 805.667 chr11 82695624 82696150 + 3.5 NA Intergenic Intergenic 37977 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 944-3 chr15 67839775 67840681 + 3.5 NA promoter-TSS (NR_104080).5 promoter-TSS (NR_104080).5 -183 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 1064.67-2 chr11 15074506 15075385 + 3.5 NA intron (NM_000728, intron 2 of 4) intron (NM_000728, intron 2 of 4) 1352 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 594.334 chr10 106711304 106711707 + 3.5 NA intron (NM_001206569, intron 6 of 25) intron (NM_001206569, intron 6 of 25) 453201 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 471.167-2 chr11 30569552 30569809 + 3.5 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 10813 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 1133 chr2 218876171 218877015 + 3.5 NA Intergenic Intergenic -4259 NM_025216 80326 Hs.121540 NM_025216 ENSG00000135925 WNT10A OODD|SSPS|STHAG4 Wnt family member 10A protein-coding 1280.33 chr20 16475757 16476708 + 3.5 NA intron (NM_001199866, intron 12 of 22) intron (NM_001199866, intron 12 of 22) 97216 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 979.665 chrX 51804717 51805389 + 3.5 NA intron (NM_001005332, intron 1 of 12) intron (NM_001005332, intron 1 of 12) 1977 NM_001005332 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 385.5-4 chr2 175689974 175690383 + 3.5 NA Intergenic Intergenic 312089 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 748.667-2 chr1 211323398 211324186 + 3.5 NA Intergenic Intergenic -2823 NM_004619 7188 Hs.523930 NM_004619 ENSG00000082512 TRAF5 MGC:39780|RNF84 TNF receptor associated factor 5 protein-coding 358.5-8 chr14 101665236 101665762 + 3.5 NA Intergenic L1MEg|LINE|L1 -64938 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 349.833-13 chr8 38120342 38120811 + 3.5 NA intron (NM_004674, intron 9 of 15) intron (NM_004674, intron 9 of 15) 14783 NM_001261832 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like, histone lysine methyltransferase complex subunit protein-coding 1363 chr22 30634125 30634861 + 3.5 NA Intergenic MER5A|DNA|hAT-Charlie -1288 NM_001318371 339665 Hs.660384 NM_001001479 ENSG00000100036 SLC35E4 - solute carrier family 35 member E4 protein-coding 450.333-7 chr2 77247863 77248082 + 3.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 262007 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 897.833-3 chr6 150080348 150081050 + 3.5 NA Intergenic Intergenic -11578 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 401.667-4 chr13 57291399 57291712 + 3.5 NA Intergenic L1ME2z|LINE|L1 124358 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 688.333-2 chr14 86057163 86057927 + 3.5 NA intron (NR_110155, intron 1 of 3) (TATTTA)n|Simple_repeat|Simple_repeat 122867 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 1556.17 chr11 61516589 61517514 + 3.5 NA 3' UTR (NM_001365809, exon 13 of 13) 3' UTR (NM_001365809, exon 13 of 13) 8302 NM_001145077 390205 Hs.441122 NM_001145077 ENSG00000204950 LRRC10B - leucine rich repeat containing 10B protein-coding 712.167-2 chr7 139340311 139340597 + 3.5 NA promoter-TSS (NM_197964) promoter-TSS (NM_197964) 4 NR_073059 154791 Hs.718441 NM_197964 ENSG00000164898 FMC1 C7orf55|HSPC268 formation of mitochondrial complex V assembly factor 1 homolog protein-coding 894.833 chr1 31939558 31940387 + 3.5 NA Intergenic Intergenic -1604 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 1681.33 chr5 64784234 64785171 + 3.5 NA intron (NM_001297645, intron 4 of 10) intron (NM_001297645, intron 4 of 10) 15772 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 542.667-2 chr14 79045355 79045796 + 3.5 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -154407 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 853 chr11 118565920 118566777 + 3.5 NA promoter-TSS (NM_020153) promoter-TSS (NM_020153) -272 NM_020153 56912 Hs.533738 NM_020153 ENSG00000118096 IFT46 C11orf2|C11orf60|CFAP32 intraflagellar transport 46 protein-coding 996.001-2 chr3 39189543 39190212 + 3.5 NA intron (NM_194293, intron 1 of 1) intron (NM_194293, intron 1 of 1) 2718 NM_194293 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 1032.5 chr17 77088151 77089334 + 3.5 NA promoter-TSS (NR_027058) promoter-TSS (NR_027058) 57 NM_001204408 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 571-2 chr6 100099668 100099864 + 3.5 NA Intergenic Intergenic -105528 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 1345.67 chr1 153677444 153678221 + 3.5 NA promoter-TSS (NM_000906) promoter-TSS (NM_000906) -856 NM_000906 4881 Hs.490330 NM_000906 ENSG00000169418 NPR1 ANPRA|ANPa|GUC2A|GUCY2A|NPRA natriuretic peptide receptor 1 protein-coding 854.166 chr16 23596314 23596771 + 3.5 NA promoter-TSS (NM_005003) promoter-TSS (NM_005003) -226 NM_005003 4706 Hs.189716 NM_005003 ENSG00000004779 NDUFAB1 ACP|ACP1|FASN2A|SDAP NADH:ubiquinone oxidoreductase subunit AB1 protein-coding 764.501 chr16 80614804 80615536 + 3.5 NA intron (NM_152342, intron 4 of 6) intron (NM_152342, intron 4 of 6) -42362 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 1310.17 chr18 59987889 59988663 + 3.5 NA Intergenic Intergenic 88280 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 1346.67-2 chr7 12321931 12323042 + 3.5 NA Intergenic Intergenic 81379 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 850.334-2 chr2 69817086 69817525 + 3.5 NA intron (NM_001320700, intron 9 of 12) intron (NM_001320700, intron 9 of 12) -12355 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 624.667-3 chr6 8499452 8499662 + 3.5 NA intron (NR_038980, intron 2 of 4) intron (NR_038980, intron 2 of 4) 63934 NR_038980 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 1005.33 chr15 43769388 43770053 + 3.5 NA intron (NM_005313, intron 10 of 12) intron (NM_005313, intron 10 of 12) 7246 NM_025165 80237 Hs.706346 NM_025165 ENSG00000128886 ELL3 - elongation factor for RNA polymerase II 3 protein-coding 868.167 chr2 57905907 57906372 + 3.5 NA Intergenic Intergenic -1512 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 400.334-3 chr11 3854995 3855152 + 3.5 NA promoter-TSS (NM_003156) promoter-TSS (NM_003156) -591 NM_001277962 6786 Hs.501735 NM_003156 ENSG00000167323 STIM1 D11S4896E|GOK|IMD10|STRMK|TAM|TAM1 stromal interaction molecule 1 protein-coding 1465.5 chr5 66813846 66815063 + 3.5 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -14319 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 653.5-2 chr7 17301641 17301910 + 3.5 NA intron (NM_001621, intron 1 of 10) L2a|LINE|L2 3123 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 1006.83-3 chr3 190697135 190697881 + 3.5 NA Intergenic Intergenic 165186 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 508-2 chr2 200889454 200889873 + 3.5 NA promoter-TSS (NM_032472) promoter-TSS (NM_032472) 278 NM_021824 60491 Hs.145284 NM_021824 ENSG00000196290 NIF3L1 ALS2CR1|CALS-7|MDS015 NGG1 interacting factor 3 like 1 protein-coding 694.833-2 chr20 56171029 56171530 + 3.5 NA Intergenic Intergenic -77453 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 670 chr17 78019296 78020163 + 3.5 NA intron (NM_018996, intron 2 of 20) intron (NM_018996, intron 2 of 20) 15492 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 1327.67-2 chr2 27703486 27704290 + 3.5 NA Intergenic Intergenic 11844 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 921 chr14 72420890 72421406 + 3.5 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -95672 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 833.834-3 chr2 182979884 182980464 + 3.5 NA intron (NM_013436, intron 13 of 30) intron (NM_013436, intron 13 of 30) 58283 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 697-3 chr2 95207235 95207576 + 3.5 NA Intergenic CpG 41596 NM_001282398 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 1161.5 chr18 12730094 12730876 + 3.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 18937 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 929.5 chr8 58721453 58722038 + 3.5 NA Intergenic Intergenic -61892 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 552 chr1 27857970 27858454 + 3.5 NA Intergenic Intergenic -14331 NM_004848 9473 Hs.10649 NM_004848 ENSG00000130775 THEMIS2 C1orf38|ICB-1|ICB1 thymocyte selection associated family member 2 protein-coding 379.167-9 chr5 51868609 51868745 + 3.5 NA Intergenic Intergenic -139354 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 637.667 chr5 147393829 147394052 + 3.5 NA 3' UTR (NM_001387, exon 14 of 14) 3' UTR (NM_001387, exon 14 of 14) 59752 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 1194.33-4 chr3 169863197 169863779 + 3.5 NA intron (NM_024727, intron 1 of 8) intron (NM_024727, intron 1 of 8) 6447 NM_001277128 79782 Hs.411295 NM_024727 ENSG00000114248 LRRC31 HEL-S-293 leucine rich repeat containing 31 protein-coding 784.5-2 chr8 74344771 74345483 + 3.5 NA Intergenic L1ME3A|LINE|L1 -5256 NM_001040875 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 1195.67 chr2 136378391 136379213 + 3.5 NA Intergenic Intergenic -260647 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 693.167-3 chr3 70064016 70064389 + 3.5 NA Intergenic Intergenic 64458 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 810-2 chr4 40309343 40309762 + 3.5 NA intron (NR_121641, intron 2 of 3) intron (NR_121641, intron 2 of 3) 2367 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 1632.17 chr2 231052626 231053522 + 3.5 NA Intergenic CpG -3790 NM_001191037 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 673.167-3 chr6 113980891 113981338 + 3.5 NA intron (NR_125845, intron 1 of 9) MamGypLTR3|LTR|Gypsy -9966 NR_033441 3066 Hs.3352 NM_001527 ENSG00000196591 HDAC2 HD2|KDAC2|RPD3|YAF1 histone deacetylase 2 protein-coding 881 chr11 32809183 32809695 + 3.5 NA Intergenic Intergenic -14781 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 1549.17-2 chr10 90879182 90880694 + 3.5 NA intron (NM_006413, intron 5 of 10) intron (NM_006413, intron 5 of 10) 7964 NM_001104546 10556 Hs.139120 NM_006413 ENSG00000148688 RPP30 TSG15 ribonuclease P/MRP subunit p30 protein-coding 1248.33 chr12 114662335 114663020 + 3.5 NA Intergenic Intergenic 21498 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 958.667 chr12 50132330 50132953 + 3.5 NA intron (NM_001331072, intron 10 of 10) intron (NM_001331072, intron 10 of 10) 20405 NM_001257133 84987 Hs.388645 NM_032901 ENSG00000178449 COX14 C12orf62|PCAG1 cytochrome c oxidase assembly factor COX14 protein-coding 310.5-6 chr14 21477047 21477172 + 3.5 NA promoter-TSS (NM_032846) promoter-TSS (NM_032846) -86 NM_001303523 9878 Hs.555910 NM_014828 ENSG00000092203 TOX4 C14orf92|KIAA0737|LCP1|MIG7 TOX high mobility group box family member 4 protein-coding 552.167 chr10 115417808 115418272 + 3.5 NA intron (NM_207303, intron 20 of 28) L1MA6|LINE|L1 324675 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 647.834 chr1 201999571 202000051 + 3.5 NA TTS (NR_146472) TTS (NR_146472) -3313 NR_106798 102465443 NR_106798 ENSG00000275207 MIR6740 hsa-mir-6740 microRNA 6740 ncRNA 713.166 chr12 59835136 59835486 + 3.5 NA Intergenic L1MC3|LINE|L1 145941 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 1475.67 chr12 107912248 107912994 + 3.5 NA Intergenic Intergenic -8850 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 644.833-2 chr2 189674243 189674845 + 3.5 NA Intergenic CpG -1441 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 880.667 chr19 10416695 10417166 + 3.5 NA 5' UTR (NM_001243121, exon 2 of 17) 5' UTR (NM_001243121, exon 2 of 17) 157 NM_001243121 5141 Hs.89901 NM_006202 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A protein-coding 1174.83 chr14 69398058 69398918 + 3.5 NA promoter-TSS (NM_001252148) promoter-TSS (NM_001252148) 104 NM_001252152 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 390.5-2 chr12 48995494 48995803 + 3.5 NA 3' UTR (NM_015086, exon 2 of 2) 3' UTR (NM_015086, exon 2 of 2) -2699 NR_147179 105369758 Hs.120228 NR_147178 ENSG00000257913 DDN-AS1 CAT1507 DDN and PRKAG1 antisense RNA 1 ncRNA 1213.83 chr4 186472641 186473503 + 3.5 NA intron (NR_033901, intron 1 of 6) intron (NR_033901, intron 1 of 6) 27986 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 1320.67 chr12 81268245 81269085 + 3.5 NA intron (NM_001282536, intron 25 of 29) intron (NM_001282536, intron 25 of 29) -10524 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 732.667-2 chr8 140431867 140432210 + 3.5 NA intron (NM_001160372, intron 4 of 22) intron (NM_001160372, intron 4 of 22) 25706 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 583.333-2 chr11 5004611 5004886 + 3.5 NA Intergenic LTR41B|LTR|ERVL 5765 NM_001004755 119682 Hs.553559 NM_001004755 ENSG00000176798 OR51L1 OR11-31 olfactory receptor family 51 subfamily L member 1 protein-coding 822.5 chr1 161192244 161192874 + 3.5 NA intron (NM_005099, intron 7 of 8) MIRb|SINE|MIR 6495 NM_001320336 9507 Hs.211604 NM_005099 ENSG00000158859 ADAMTS4 ADAMTS-2|ADAMTS-4|ADMP-1 ADAM metallopeptidase with thrombospondin type 1 motif 4 protein-coding 930.334-3 chr3 69948225 69948858 + 3.5 NA intron (NM_198178, intron 4 of 8) intron (NM_198178, intron 4 of 8) 11941 NM_000248 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 525.666 chr10 89553342 89553611 + 3.5 NA Intergenic Intergenic -17882 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 1928.83 chr3 62665111 62666507 + 3.5 NA intron (NM_003716, intron 3 of 29) MIRb|SINE|MIR 209607 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 686.333 chr10 113704834 113705306 + 3.5 NA intron (NM_001227, intron 2 of 6) intron (NM_001227, intron 2 of 6) -4275 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 829.833 chr18 76686877 76687231 + 3.5 NA Intergenic Intergenic -2975 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 1475.5-2 chr14 48398646 48399848 + 3.5 NA Intergenic Intergenic -604233 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 661 chr1 156445556 156446265 + 3.5 NA Intergenic Intergenic -16362 NR_135263 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 307-14 chr6 57314021 57314210 + 3.5 NA promoter-TSS (NM_001282488) promoter-TSS (NM_001282488) -690 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 922 chr22 21952926 21953565 + 3.5 NA promoter-TSS (NM_014634) promoter-TSS (NM_014634) -397 NM_014634 9647 Hs.112728 NM_014634 ENSG00000100034 PPM1F CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2 protein phosphatase, Mg2+/Mn2+ dependent 1F protein-coding 1570.33 chr3 69306122 69306981 + 3.5 NA intron (NM_015123, intron 3 of 22) intron (NM_015123, intron 3 of 22) 79537 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 1128.67-2 chr20 58179401 58180144 + 3.5 NA Intergenic CpG 28870 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 854.833 chr11 33996928 33997432 + 3.5 NA Intergenic Intergenic -54551 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 683.001 chr4 119286237 119286811 + 3.5 NA intron (NM_001371398, intron 16 of 16) intron (NM_001371398, intron 16 of 16) 14121 NM_001001701 401152 Hs.173705 NM_001001701 ENSG00000164096 C4orf3 ALN|HCVFTP1 chromosome 4 open reading frame 3 protein-coding 719.667-2 chr14 73662256 73662922 + 3.5 NA intron (NM_001201366, intron 5 of 8) MLT1D|LTR|ERVL-MaLR 17603 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 1312.33-2 chr17 57857750 57858698 + 3.5 NA Intergenic UCON132b|DNA|hAT-Tip100 -8180 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 990.167 chr7 4610758 4611241 + 3.5 NA Intergenic Zaphod2|DNA|hAT-Tip100 -71296 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1003.33 chr2 26605200 26605844 + 3.5 NA intron (NM_001029881, intron 3 of 6) intron (NM_001029881, intron 3 of 6) 35844 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 455.167-2 chr11 119030889 119031139 + 3.5 NA promoter-TSS (NM_001164278).2 promoter-TSS (NM_001164278).2 -108 NM_001164277 2542 Hs.719203 NM_001467 ENSG00000137700 SLC37A4 G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|TRG-19|TRG19 solute carrier family 37 member 4 protein-coding 416.667-11 chr7 79117319 79117460 + 3.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 108401 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 894.166 chr22 19730552 19730991 + 3.5 NA Intergenic CpG 7228 NM_000407 2812 Hs.283743 NM_000407 ENSG00000203618 GP1BB BDPLT1|BS|CD42C|GPIBB|GPIbbeta glycoprotein Ib platelet subunit beta protein-coding 595 chr1 245078962 245079192 + 3.5 NA intron (NM_032328, intron 4 of 7) intron (NM_032328, intron 4 of 7) -75908 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 348.667-3 chr10 93357810 93357979 + 3.5 NA intron (NM_013451, intron 29 of 53) intron (NM_013451, intron 29 of 53) 124440 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 644.667 chr1 64823830 64824605 + 3.5 NA intron (NM_001366165, intron 11 of 11) intron (NM_001366165, intron 11 of 11) 79142 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 740 chr15 42059867 42060157 + 3.5 NA Intergenic Intergenic -9309 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 595.833 chr12 82326862 82327314 + 3.5 NA Intergenic Intergenic 31299 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 1194.17-2 chr8 74965675 74966481 + 3.5 NA Intergenic Intergenic -18427 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 1419.17 chr1 235504314 235504999 + 3.5 NA promoter-TSS (NM_001277155).2 promoter-TSS (NM_001277155).2 -204 NM_152490 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 706 chr10 50972917 50973282 + 3.5 NA Intergenic Intergenic -17789 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 539.5-2 chr4 44250291 44250674 + 3.5 NA intron (NM_198353, intron 1 of 1) MIR|SINE|MIR 198327 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 1020 chr5 157816402 157817275 + 3.5 NA intron (NM_014666, intron 2 of 11) intron (NM_014666, intron 2 of 11) 42307 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 292.667-12 chr3 28720445 28720576 + 3.5 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 145232 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 840.334 chr20 62791510 62792201 + 3.5 NA Intergenic Intergenic -4618 NM_018270 55257 Hs.443260 NM_018270 ENSG00000101189 MRGBP C20orf20|Eaf7|MRG15BP|URCC4 MRG domain binding protein protein-coding 1482.67 chr8 119416517 119417586 + 3.5 NA intron (NM_002514, intron 2 of 4) intron (NM_002514, intron 2 of 4) 605 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 999.166 chr15 63093522 63094218 + 3.5 NA Intergenic Intergenic -27991 NM_171846 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 951.5 chr8 61563357 61563697 + 3.5 NA intron (NM_004318, intron 17 of 24) intron (NM_004318, intron 17 of 24) 126284 NM_032468 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 692.834 chr16 56701866 56702470 + 3.5 NA Intergenic Intergenic 19698 NM_005952 4501 Hs.374950 NM_005952 ENSG00000187193 MT1X MT-1l|MT1 metallothionein 1X protein-coding 1122.67 chr17 43389276 43389929 + 3.5 NA promoter-TSS (NR_027412) promoter-TSS (NR_027412) -704 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 792.334 chr5 39074522 39075022 + 3.5 NA promoter-TSS (NM_152756) promoter-TSS (NM_152756) -373 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 612.5 chr13 73754661 73755159 + 3.5 NA intron (NM_007249, intron 6 of 7) intron (NM_007249, intron 6 of 7) 190666 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 830.833 chr3 50542421 50542899 + 3.5 NA Intergenic Intergenic 25087 NM_001171743 51161 Hs.517860 NM_016210 ENSG00000088543 C3orf18 G20 chromosome 3 open reading frame 18 protein-coding 427.667-5 chr2 74458223 74458440 + 3.5 NA promoter-TSS (NM_012477) promoter-TSS (NM_012477) -107 NM_012477 23559 Hs.516114 NM_012477 ENSG00000239779 WBP1 WBP-1 WW domain binding protein 1 protein-coding 706.167-4 chr2 19955416 19956041 + 3.5 NA intron (NM_001006657, intron 12 of 27) intron (NM_001006657, intron 12 of 27) 34377 NM_020779 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 1139.17 chr2 117785670 117786566 + 3.5 NA Intergenic Intergenic -28573 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 764.667-2 chr4 25234661 25235215 + 3.5 NA intron (NM_018323, intron 1 of 9) intron (NM_018323, intron 1 of 9) 905 NR_144633 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 442.334-5 chrX 15493256 15493420 + 3.5 NA promoter-TSS (NM_001018109) promoter-TSS (NM_001018109) -5 NM_001018109 8544 Hs.495728 NM_003662 ENSG00000087842 PIR - pirin protein-coding 598 chr1 241986076 241986252 + 3.5 NA Intergenic Intergenic 12934 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 1806.33 chr2 168346219 168347672 + 3.5 NA Intergenic Intergenic -99350 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 800.333-2 chr7 79271710 79272334 + 3.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -180935 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 1172.17 chr1 84772143 84773099 + 3.5 NA Intergenic Intergenic -82153 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 817.5-2 chr8 86791803 86792561 + 3.5 NA Intergenic Intergenic -48507 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 656.333-3 chr3 22563992 22564362 + 3.5 NA Intergenic AluSx|SINE|Alu 607038 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 884.334 chr5 116068049 116068497 + 3.5 NA Intergenic Intergenic -16752 NR_146218 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 204-37 chr7 120733274 120733346 + 3.5 NA intron (NM_012281, intron 2 of 5) intron (NM_012281, intron 2 of 5) 124834 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 498.667-3 chr7 130832010 130832456 + 3.5 NA Intergenic L1ME3A|LINE|L1 44577 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 717.5-3 chr6 110039561 110040328 + 3.5 NA Intergenic Intergenic 61633 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 992.834 chr9 34929480 34930047 + 3.5 NA Intergenic Intergenic -27724 NR_136307 23349 Hs.7989 NM_015297 ENSG00000122733 PHF24 - PHD finger protein 24 protein-coding 1004.67 chr8 9368916 9369630 + 3.5 NA Intergenic Intergenic 44222 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 718.5-5 chr6 36850865 36851694 + 3.5 NA Intergenic Intergenic -11835 NM_001314017 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 920.167-2 chr2 190023828 190024544 + 3.5 NA Intergenic Intergenic 38543 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 1287.17-2 chr7 90427601 90428242 + 3.5 NA Intergenic Intergenic 24460 NM_001185073 9069 Hs.731917 NM_012129 ENSG00000157224 CLDN12 - claudin 12 protein-coding 718.5-2 chr18 60549151 60550131 + 3.5 NA Intergenic Intergenic -176866 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 779.166 chr14 73172899 73173455 + 3.5 NA intron (NM_000021, intron 4 of 11) intron (NM_000021, intron 4 of 11) 36670 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 786-2 chr15 70526681 70527075 + 3.5 NA Intergenic Intergenic -20950 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 650.999 chr5 169161073 169161487 + 3.5 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 102414 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 1388-2 chr8 58388246 58389290 + 3.5 NA Intergenic Intergenic -22496 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 308.5-21 chr5 139968971 139969067 + 3.5 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 74280 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 952.833-2 chr22 20268410 20268950 + 3.5 NA promoter-TSS (NM_023004) promoter-TSS (NM_023004) -362 NM_023004 65078 Hs.30868 NM_023004 ENSG00000040608 RTN4R NGR|NOGOR reticulon 4 receptor protein-coding 2080 chr5 87400033 87401022 + 3.5 NA intron (NR_157069, intron 5 of 8) intron (NR_157069, intron 5 of 8) 12377 NM_001199189 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 601.5 chr11 17972994 17973295 + 3.5 NA intron (NR_104040, intron 8 of 11) intron (NR_104040, intron 8 of 11) 39903 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 806.333 chr5 148179131 148179449 + 3.5 NA Intergenic Intergenic 10744 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 1597.17 chr2 176140042 176141136 + 3.5 NA TTS (NR_148241) TTS (NR_148241) -3491 NR_038435 100506783 Hs.667234 NR_038435 HOXD-AS2 - HOXD cluster antisense RNA 2 ncRNA 817.667-3 chr5 123611052 123611718 + 3.5 NA intron (NM_001044723, intron 12 of 12) intron (NM_001044723, intron 12 of 12) 65968 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 894.334 chr5 90932006 90932581 + 3.5 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 373496 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 310.833-15 chrX 18425352 18425468 + 3.5 NA promoter-TSS (NM_001323289) promoter-TSS (NM_001323289) -195 NM_003159 6792 Hs.659851 NM_003159 ENSG00000008086 CDKL5 CFAP247|EIEE2|ISSX|STK9 cyclin dependent kinase like 5 protein-coding 1026.83-2 chr7 123701388 123702053 + 3.5 NA intron (NM_003941, intron 5 of 10) intron (NM_003941, intron 5 of 10) 45854 NM_207163 442721 Hs.592260 NM_207163 ENSG00000170807 LMOD2 C-LMOD|CLMOD leiomodin 2 protein-coding 816.333 chr5 12292172 12292866 + 3.5 NA Intergenic Intergenic -282338 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 1310-2 chr19 38849423 38850667 + 3.5 NA promoter-TSS (NM_001533) promoter-TSS (NM_001533) -68 NM_001533 3191 Hs.644906 NM_001533 ENSG00000104824 HNRNPL HNRPL|P/OKcl.14|hnRNP-L heterogeneous nuclear ribonucleoprotein L protein-coding 695.999 chr11 88544314 88544786 + 3.5 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 39974 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 1361.17 chr15 82139607 82140418 + 3.5 NA intron (NM_001040610, intron 16 of 17) intron (NM_001040610, intron 16 of 17) 51418 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 1071.5 chr1 94481168 94482002 + 3.5 NA intron (NM_002858, intron 9 of 22) MLT1L|LTR|ERVL-MaLR 60174 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 456.167-3 chr3 48663839 48664286 + 3.5 NA intron (NR_111921, intron 1 of 2) CpG 294 NR_111921 102724368 Hs.663571 NR_111921 ENSG00000228350 LINC02585 CELSR3-AS1 long intergenic non-protein coding RNA 2585 ncRNA 1216.17-2 chr7 135621183 135621655 + 3.5 NA intron (NM_015135, intron 30 of 42) intron (NM_015135, intron 30 of 42) -41095 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 1883 chr1 65957787 65959320 + 3.5 NA intron (NM_002600, intron 3 of 16) L1M4|LINE|L1 -34063 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 675.834 chr1 171245311 171245919 + 3.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -2856 NM_001282694 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 1373.33-2 chr20 58236779 58237649 + 3.5 NA intron (NR_003505, intron 14 of 16) intron (NR_003505, intron 14 of 16) -8561 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 409.667-5 chr20 55561385 55561558 + 3.5 NA Intergenic L1PA16|LINE|L1 -134274 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 728.5-2 chr9 105415192 105416071 + 3.5 NA intron (NM_001330731, intron 15 of 15) intron (NM_001330731, intron 15 of 15) -32403 NM_001287191 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 1288.17-2 chr3 124688775 124689546 + 3.5 NA intron (NM_007064, intron 18 of 26) intron (NM_007064, intron 18 of 26) -41206 NR_033437 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 893.667-2 chr14 37903485 37904292 + 3.5 NA Intergenic Intergenic -1764 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 313-3 chr10 17910213 17910573 + 3.5 NA exon (NM_002438, exon 30 of 30) exon (NM_002438, exon 30 of 30) -41446 NM_152725 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 847.666-2 chr12 99043154 99043581 + 3.5 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) -49992 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 787.333 chr17 66625393 66625879 + 3.5 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -161436 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 1167.33-2 chr2 9142383 9143135 + 3.5 NA Intergenic Intergenic -64006 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 1536 chr15 64067691 64068695 + 3.5 NA Intergenic MIR|SINE|MIR -21708 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 1395-3 chr4 48109445 48110340 + 3.5 NA intron (NM_003328, intron 5 of 14) intron (NM_003328, intron 5 of 14) 24358 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 1502.33 chr14 70027536 70028400 + 3.5 NA intron (NM_022137, intron 11 of 11) intron (NM_022137, intron 11 of 11) 49835 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 695.834 chr1 38587026 38587483 + 3.5 NA Intergenic MamGyp-int|LTR|Gypsy 112058 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 791.833-4 chr5 138077022 138077547 + 3.5 NA Intergenic Intergenic -6608 NM_058244 7478 Hs.591274 NM_031933 ENSG00000061492 WNT8A WNT8D Wnt family member 8A protein-coding 582.5 chr1 84433798 84434236 + 3.5 NA Intergenic (TTGCT)n|Simple_repeat|Simple_repeat 25666 NM_058248 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 575.5-3 chr2 219298800 219299253 + 3.5 NA intron (NM_001199764, intron 12 of 22) intron (NM_001199764, intron 12 of 22) -4826 NR_029688 406944 NR_029688 ENSG00000207647 MIR153-1 MIRN153-1|mir-153-1 microRNA 153-1 ncRNA 938.833-2 chr15 89442289 89442947 + 3.5 NA Intergenic Intergenic 42447 NR_160724 105371031 NR_160724 LOC105371031 - uncharacterized LOC105371031 ncRNA 935 chr8 25509706 25510318 + 3.5 NA Intergenic Intergenic 50779 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 1515.5 chr7 23696787 23697510 + 3.5 NA intron (NM_001127365, intron 3 of 4) intron (NM_001127365, intron 3 of 4) -13071 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 643-2 chr7 19491596 19492557 + 3.5 NA Intergenic Intergenic 213360 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 804.5 chr16 12095257 12095743 + 3.5 NA intron (NM_032167, intron 11 of 20) intron (NM_032167, intron 11 of 20) 118766 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 460.833 chr10 97463472 97463754 + 3.5 NA intron (NM_001289403, intron 18 of 29) intron (NM_001289403, intron 18 of 29) 17438 NM_198046 84287 Hs.76662 NM_032327 ENSG00000171307 ZDHHC16 APH2|DHHC-16 zinc finger DHHC-type containing 16 protein-coding 1113 chr16 75385528 75386186 + 3.5 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) 47646 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 1067.17-2 chr2 173027387 173028031 + 3.5 NA intron (NM_001282901, intron 19 of 24) intron (NM_001282901, intron 19 of 24) -48137 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 1117.5-3 chr5 172461901 172462959 + 3.5 NA Intergenic Intergenic -7905 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 1519 chr10 97210265 97210981 + 3.5 NA intron (NR_037909, intron 11 of 14) intron (NR_037909, intron 11 of 14) -24664 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 1078.33-2 chr14 64764610 64765384 + 3.5 NA intron (NM_001024858, intron 31 of 34) intron (NM_001024858, intron 31 of 34) 20689 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 770.167 chr1 153568383 153568951 + 3.5 NA Intergenic Intergenic -2823 NM_005978 6273 Hs.516484 NM_005978 ENSG00000196754 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 709 chr11 129363520 129364586 + 3.5 NA Intergenic Intergenic -11795 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 737.834-3 chr3 16247384 16247952 + 3.5 NA Intergenic LTR37A|LTR|ERV1 17275 NM_001047434 285381 Hs.388087 NM_206831 ENSG00000154813 DPH3 DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 diphthamide biosynthesis 3 protein-coding 921.667 chr4 84503988 84504416 + 3.5 NA Intergenic Intergenic -5968 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 1317.17 chr20 9616601 9617432 + 3.5 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -102018 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 677 chr11 7442736 7443339 + 3.5 NA intron (NR_103855, intron 4 of 4) L2b|LINE|L2 22798 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 817.667-2 chr20 44216918 44217563 + 3.5 NA intron (NR_038337, intron 2 of 2) intron (NR_038337, intron 2 of 2) 6154 NR_038337 100505783 Hs.159049 NR_038337 ENSG00000223891 OSER1-DT OSER1-AS1 OSER1 divergent transcript ncRNA 686.167-3 chr18 77650816 77651292 + 3.5 NA Intergenic Intergenic 342673 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 407.167-7 chr4 159446656 159446958 + 3.5 NA Intergenic Intergenic 178998 NM_001351728 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 864-2 chr2 121811153 121811703 + 3.5 NA Intergenic Intergenic 55777 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 765.166 chr2 177772070 177773008 + 3.5 NA intron (NM_001077197, intron 10 of 20) intron (NM_001077197, intron 10 of 20) 99217 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 880.334 chr10 26606529 26606945 + 3.5 NA Intergenic L1PA3|LINE|L1 16872 NR_026793 645528 Hs.634511 NR_026793 ENSG00000233261 FAM238A C10orf50|LINC00264|NCRNA00264|bA128B16.2 family with sequence similarity 238 member A ncRNA 1079.17-2 chr9 75001941 75002675 + 3.5 NA intron (NM_001320497, intron 3 of 7) intron (NM_001320497, intron 3 of 7) 24843 NM_001320497 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 792.501 chr1 172742370 172743157 + 3.5 NA Intergenic Intergenic 83660 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 1397.83 chr6 122869007 122869972 + 3.5 NA Intergenic Intergenic 80231 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 718.833 chr4 72326674 72327309 + 3.5 NA intron (NM_014243, intron 5 of 21) intron (NM_014243, intron 5 of 21) 242230 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 419.167-4 chr19 46280716 46281170 + 3.5 NA Intergenic Intergenic -16099 NM_152795 64344 Hs.420830 NM_022462 ENSG00000124440 HIF3A HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17 hypoxia inducible factor 3 subunit alpha protein-coding 1100.33-3 chr19 49640206 49640917 + 3.5 NA promoter-TSS (NM_006270) promoter-TSS (NM_006270) -418 NM_006270 6237 Hs.515536 NM_006270 ENSG00000126458 RRAS R-Ras RAS related protein-coding 1027.33 chr10 69237331 69238067 + 3.5 NA intron (NM_025130, intron 4 of 17) intron (NM_025130, intron 4 of 17) -5209 NR_120648 101928994 Hs.562925 NR_120648 ENSG00000229261 LOC101928994 - uncharacterized LOC101928994 ncRNA 720-2 chr4 72072964 72073278 + 3.5 NA intron (NM_001144756, intron 2 of 4) L1M4c|LINE|L1 33989 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 654.167-2 chr13 101144582 101145124 + 3.5 NA exon (NM_052867, exon 16 of 44) exon (NM_052867, exon 16 of 44) -200489 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 1107-2 chr6 114096317 114097225 + 3.5 NA intron (NR_125845, intron 5 of 9) intron (NR_125845, intron 5 of 9) -33894 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 846.667 chr1 174983044 174983667 + 3.5 NA intron (NM_001366454, intron 8 of 8) intron (NM_001366454, intron 8 of 8) -16080 NM_001007214 27101 Hs.508524 NM_014412 ENSG00000116161 CACYBP GIG5|PNAS-107|S100A6BP|SIP calcyclin binding protein protein-coding 593.667-4 chr8 64690697 64691038 + 3.5 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 107870 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 950.667 chr8 127400179 127401156 + 3.5 NA non-coding (NR_109834, exon 1 of 1) non-coding (NR_109834, exon 1 of 1) 268 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 1395.83-3 chr9 94213289 94214303 + 3.5 NA intron (NR_160773, intron 1 of 2) intron (NR_160773, intron 1 of 2) -9230 NR_046163 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 1315.67-3 chr8 11566829 11567902 + 3.5 NA Intergenic Intergenic -9170 NR_040035 83655 Hs.742430 NR_040035 ENSG00000170983 LINC00208 C8orf14|NCRNA00208|VIR35 long intergenic non-protein coding RNA 208 ncRNA 1483 chr17 69522804 69523861 + 3.5 NA intron (NM_001330450, intron 7 of 11) intron (NM_001330450, intron 7 of 11) 21070 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 689.833-3 chr17 68777145 68777695 + 3.5 NA Intergenic Intergenic 149266 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 439.666-2 chr4 107047717 107047961 + 3.5 NA Intergenic L1M5|LINE|L1 -11526 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 1228.16 chr2 17672841 17673484 + 3.5 NA intron (NM_024624, intron 24 of 26) L1ME3|LINE|L1 80648 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 800.833 chr2 16772990 16773357 + 3.5 NA Intergenic Intergenic -107339 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 786.667 chr10 60099945 60100610 + 3.5 NA intron (NM_001204403, intron 29 of 43) intron (NM_001204403, intron 29 of 43) 40739 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 989.667 chr2 18404647 18405168 + 3.5 NA Intergenic MER91C|DNA|hAT-Tip100 155746 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 1146.17 chr1 89085310 89086296 + 3.5 NA Intergenic Intergenic -20595 NM_002053 2633 Hs.62661 NM_002053 ENSG00000117228 GBP1 - guanylate binding protein 1 protein-coding 498.501 chr11 68460317 68460649 + 3.5 NA promoter-TSS (NM_001352360) promoter-TSS (NM_001352360) -269 NR_147970 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 825.166 chr12 49088044 49088692 + 3.5 NA 3' UTR (NM_021044, exon 3 of 3) 3' UTR (NM_021044, exon 3 of 3) 6433 NM_021044 50846 Hs.524382 NM_021044 ENSG00000139549 DHH GDXYM|HHG-3|SRXY7 desert hedgehog signaling molecule protein-coding 574.5-2 chr8 116755805 116756097 + 3.5 NA promoter-TSS (NM_003756) promoter-TSS (NM_003756) -128 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 1005.5-2 chr4 94127538 94128246 + 3.5 NA intron (NR_125922, intron 6 of 8) intron (NR_125922, intron 6 of 8) 79664 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 773.667-2 chr4 158259738 158260172 + 3.5 NA Intergenic Intergenic 49469 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 1300.5 chr2 198309261 198310097 + 3.5 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 65418 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 806.833-2 chr19 47295857 47296332 + 3.5 NA Intergenic AluJr|SINE|Alu -13767 NM_001736 728 Hs.2161 NM_001736 ENSG00000197405 C5AR1 C5A|C5AR|C5R1|CD88 complement C5a receptor 1 protein-coding 991.5-2 chr4 73446490 73447060 + 3.5 NA intron (NM_001354717, intron 7 of 14) intron (NM_001354717, intron 7 of 14) 10554 NM_001134 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 780.167-3 chr7 88111325 88111836 + 3.5 NA intron (NM_001324421, intron 5 of 28) intron (NM_001324421, intron 5 of 28) -105080 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 1191.33 chr12 5022208 5022944 + 3.5 NA Intergenic Intergenic -21303 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 823 chr17 12180450 12180980 + 3.5 NA Intergenic MIR|SINE|MIR 98816 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 895.333 chr1 43946242 43947175 + 3.5 NA promoter-TSS (NM_014652) promoter-TSS (NM_014652) -242 NM_014652 9670 Hs.158497 NM_014652 ENSG00000117408 IPO13 IMP13|KAP13|LGL2|RANBP13 importin 13 protein-coding 1268.17 chr16 18969000 18969862 + 3.5 NA Intergenic Intergenic -14503 NR_136733 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 640.167 chr1 235782887 235783433 + 3.5 NA intron (NM_000081, intron 14 of 52) intron (NM_000081, intron 14 of 52) 69900 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 986.5 chr2 75608846 75609691 + 3.5 NA Intergenic MamGypLTR3|LTR|Gypsy -37515 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 662.5-2 chr8 120605838 120606096 + 3.5 NA intron (NM_021021, intron 3 of 6) MER91A|DNA|hAT-Tip100 -155286 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 255.5-38 chr8 81996476 81996560 + 3.5 NA Intergenic Intergenic -154232 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 450.833-2 chr11 95149713 95149932 + 3.5 NA promoter-TSS (NR_110303) promoter-TSS (NR_110303) -717 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 950 chr11 75814389 75815213 + 3.33333 NA promoter-TSS (NR_144531) promoter-TSS (NR_144531) -4 NR_144531 100506113 Hs.720913 NR_144531 ENSG00000255507 UVRAG-DT - UVRAG divergent transcript ncRNA 480.5 chr1 8986400 8986686 + 3.33333 NA Intergenic AluJo|SINE|Alu 39802 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 1163 chr1 39973665 39974164 + 3.33333 NA Intergenic L2a|LINE|L2 18769 NM_001287809 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 613.666 chr15 85486140 85486353 + 3.33333 NA intron (NM_007200, intron 2 of 36) L1M4|LINE|L1 105643 NM_006738 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 948.001 chr12 44015105 44015847 + 3.33333 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 179395 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 1086.5-2 chr9 119289556 119290220 + 3.33333 NA intron (NM_014618, intron 2 of 7) L2|LINE|L2 79547 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 760.667 chr19 29730174 29730929 + 3.33333 NA Intergenic Intergenic -14762 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 677.999 chr13 101101767 101101985 + 3.33333 NA intron (NM_001350749, intron 26 of 43) intron (NM_001350749, intron 26 of 43) -157512 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 976.167 chr11 59615752 59616457 + 3.33333 NA promoter-TSS (NM_002556) promoter-TSS (NM_002556) -330 NM_002556 5007 Hs.597091 NM_002556 ENSG00000110048 OSBP OSBP1 oxysterol binding protein protein-coding 2090.33 chr10 58951651 58953101 + 3.33333 NA Intergenic Intergenic -47142 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 645.167-2 chr14 70317983 70318589 + 3.33333 NA Intergenic Intergenic 41397 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 823.833 chr6 71478896 71479506 + 3.33333 NA Intergenic Intergenic 58174 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 688.666 chr11 48116770 48116992 + 3.33333 NA intron (NM_001098503, intron 3 of 8) intron (NM_001098503, intron 3 of 8) 20099 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 876.833-3 chr19 32104268 32105449 + 3.33333 NA non-coding (NR_110694, exon 1 of 4) non-coding (NR_110694, exon 1 of 4) 1058 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 1721.67 chr1 218329494 218330479 + 3.33333 NA intron (NM_016052, intron 4 of 4) intron (NM_016052, intron 4 of 4) -15298 NM_001135599 7042 Hs.133379 NM_003238 ENSG00000092969 TGFB2 G-TSF|LDS4|TGF-beta2 transforming growth factor beta 2 protein-coding 360.999-4 chr9 9791668 9791885 + 3.33333 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) -7616 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 450.666-5 chr19 40570592 40570800 + 3.33333 NA exon (NM_020971, exon 33 of 36) exon (NM_020971, exon 33 of 36) -6177 NM_138392 92799 Hs.26506 NM_138392 ENSG00000160410 SHKBP1 PP203|Sb1 SH3KBP1 binding protein 1 protein-coding 703.5-2 chr4 93199741 93200047 + 3.33333 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -628859 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 468.833-2 chr17 7614987 7615291 + 3.33333 NA promoter-TSS (NM_004860) promoter-TSS (NM_004860) -242 NM_004860 9513 Hs.52788 NM_004860 ENSG00000129245 FXR2 FMR1L2|FXR2P FMR1 autosomal homolog 2 protein-coding 871.999 chr22 21713082 21713411 + 3.33333 NA intron (NM_013313, intron 1 of 4) L1MB3|LINE|L1 22548 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 834.833 chr5 141692038 141692677 + 3.33333 NA Intergenic CpG -10127 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 991.666-2 chr15 62060437 62061071 + 3.33333 NA promoter-TSS (NM_017684) promoter-TSS (NM_017684) 251 NR_135690 101928907 Hs.552949 NR_135690 LOC101928907 - uncharacterized LOC101928907 ncRNA 786.833 chrX 51420505 51420951 + 3.33333 NA Intergenic Intergenic 13780 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 827.334-2 chr2 99818616 99819236 + 3.33333 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 286657 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 1411.34 chr14 67117918 67118797 + 3.33333 NA intron (NM_001024218, intron 15 of 21) MER34A1|LTR|ERV1 -71083 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 610.5-3 chr6 136967924 136968397 + 3.33333 NA Intergenic Intergenic 25071 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 1645.33-2 chr3 132342643 132343624 + 3.33333 NA intron (NM_001292037, intron 5 of 8) intron (NM_001292037, intron 5 of 8) 25726 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 647.333 chr17 7329392 7329717 + 3.33333 NA promoter-TSS (NM_001005408) promoter-TSS (NM_001005408) -219 NM_032442 84461 Hs.654794 NM_032442 ENSG00000215041 NEURL4 - neuralized E3 ubiquitin protein ligase 4 protein-coding 512.333-2 chr17 45277214 45277711 + 3.33333 NA intron (NM_003954, intron 6 of 15) intron (NM_003954, intron 6 of 15) -15368 NM_152343 124783 Hs.412719 NM_152343 ENSG00000184361 SPATA32 AEP2|C17orf46|TEX34|VAD1.2 spermatogenesis associated 32 protein-coding 1062.5 chr10 132903970 132904665 + 3.33333 NA intron (NM_001200049, intron 22 of 57) intron (NM_001200049, intron 22 of 57) 38253 NM_001200049 54777 Hs.298038 NM_017609 ENSG00000171811 CFAP46 C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3 cilia and flagella associated protein 46 protein-coding 517.833 chr1 160124824 160125116 + 3.33333 NA intron (NM_000702, intron 6 of 22) MIRc|SINE|MIR 9211 NM_000702 477 Hs.34114 NM_000702 ENSG00000018625 ATP1A2 FHM2|MHP2 ATPase Na+/K+ transporting subunit alpha 2 protein-coding 633.333-2 chr14 61596244 61596619 + 3.33333 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -25778 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 298.333-19 chr9 83583218 83583369 + 3.33333 NA Intergenic Intergenic -39756 NM_001256915 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 799.167-2 chrX 38753878 38754526 + 3.33333 NA Intergenic Intergenic -47230 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 894 chr9 124551563 124552177 + 3.33333 NA intron (NM_001278546, intron 3 of 9) intron (NM_001278546, intron 3 of 9) -44471 NM_004959 2516 Hs.495108 NM_004959 ENSG00000136931 NR5A1 AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1 nuclear receptor subfamily 5 group A member 1 protein-coding 995.167 chr7 90454998 90456036 + 3.33333 NA Intergenic Intergenic -14122 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 435.334 chr4 74264175 74264444 + 3.33333 NA intron (NR_147097, intron 8 of 9) L1M4|LINE|L1 -44161 NM_001270993 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 1095.67-2 chr6 116971767 116972482 + 3.33333 NA Intergenic Intergenic 94882 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 1132.5-3 chr4 87973093 87973999 + 3.33333 NA Intergenic Intergenic -2104 NM_001251830 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 1202.33 chr3 30012687 30013322 + 3.33333 NA Intergenic Intergenic -78848 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 458.833 chr11 103110492 103110864 + 3.33333 NA intron (NM_001377, intron 1 of 88) intron (NM_001377, intron 1 of 88) 1252 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 707.334 chr1 61453239 61453986 + 3.33333 NA intron (NM_001134673, intron 10 of 10) intron (NM_001134673, intron 10 of 10) -200094 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 1081.17 chr15 64809668 64810513 + 3.33333 NA Intergenic Intergenic 15557 NM_001286499 80119 Hs.112160 NM_025049 ENSG00000140451 PIF1 C15orf20|PIF PIF1 5'-to-3' DNA helicase protein-coding 626.666-4 chr4 10549818 10550177 + 3.33333 NA intron (NM_052964, intron 8 of 18) intron (NM_052964, intron 8 of 18) -92571 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 806.833 chr11 75408043 75408366 + 3.33333 NA intron (NM_001256802, intron 6 of 6) L1ME3A|LINE|L1 3783 NR_000025 114599 Hs.689080 NR_000025 ENSG00000207445 SNORD15B RNU15B|U15B small nucleolar RNA, C/D box 15B snoRNA 905.667 chr20 52379714 52380262 + 3.33333 NA Intergenic Intergenic -188003 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 545.333-2 chr15 48811064 48811599 + 3.33333 NA promoter-TSS (NM_001194998) promoter-TSS (NM_001194998) -262 NM_014985 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 2552 chr11 65711280 65712834 + 3.33333 NA promoter-TSS (NM_182709) promoter-TSS (NM_182709) -195 NM_001206833 10524 Hs.397010 NM_006388 ENSG00000172977 KAT5 ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2 lysine acetyltransferase 5 protein-coding 573.333 chr19 42666081 42666409 + 3.33333 NA Intergenic L1MB3|LINE|L1 -71321 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 916.167-3 chr22 30287906 30288473 + 3.33333 NA intron (NM_001037666, intron 2 of 8) intron (NM_001037666, intron 2 of 8) 1438 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 CASTOR1 GATSL3 cytosolic arginine sensor for mTORC1 subunit 1 protein-coding 745.333 chr12 66861145 66861858 + 3.33333 NA Intergenic Intergenic -57232 NM_001366723 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 1035.5 chr11 122628631 122629462 + 3.33333 NA Intergenic Intergenic -26676 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 918.499-2 chr8 103511771 103512666 + 3.33333 NA intron (NM_001348497, intron 1 of 22) LTR41C|LTR|ERVL -10308 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 670.999 chr4 71732500 71732973 + 3.33333 NA Intergenic Intergenic 51343 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 694.333 chr5 146291435 146291941 + 3.33333 NA Intergenic Intergenic -47151 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 500.5-2 chr9 36555730 36556177 + 3.33333 NA Intergenic L1MC5|LINE|L1 -16909 NM_001256687 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 1002.17 chr8 136714282 136715051 + 3.33333 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 183868 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1210.67-4 chr8 19267394 19268157 + 3.33333 NA Intergenic Intergenic -22253 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 837.167 chr1 4652496 4653008 + 3.33333 NA Intergenic Intergenic -1857 NM_018836 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 668.833-2 chr8 18868552 18869053 + 3.33333 NA intron (NM_015310, intron 3 of 15) intron (NM_015310, intron 3 of 15) 18255 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 997.5-2 chr5 111157879 111158556 + 3.33333 NA Intergenic Intergenic -65366 NM_001323375 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 415.833-5 chr2 63827186 63827356 + 3.33333 NA Intergenic Intergenic -13693 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 310.5-20 chr8 127890051 127890252 + 3.33333 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 58572 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 910.833 chr14 53458307 53459077 + 3.33333 NA Intergenic Intergenic 305338 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 494.667 chr1 203861320 203861578 + 3.33333 NA promoter-TSS (NM_003094) promoter-TSS (NM_003094) -150 NR_130746 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 357.333-14 chr7 16801104 16801332 + 3.33333 NA intron (NM_006408, intron 3 of 7) intron (NM_006408, intron 3 of 7) 3781 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 1117-2 chr2 74482797 74483659 + 3.33333 NA promoter-TSS (NM_032779) promoter-TSS (NM_032779) 147 NM_022492 64427 Hs.557709 NM_022492 ENSG00000115282 TTC31 - tetratricopeptide repeat domain 31 protein-coding 770.334 chr13 35164330 35164775 + 3.33333 NA intron (NM_015678, intron 24 of 57) intron (NM_015678, intron 24 of 57) 222265 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 360.667-2 chr12 49342523 49342736 + 3.33333 NA Intergenic CpG -4259 NM_001304944 79962 Hs.659300 NM_024902 ENSG00000178401 DNAJC22 wus DnaJ heat shock protein family (Hsp40) member C22 protein-coding 646.833 chr16 31105760 31106067 + 3.33333 NA Intergenic CpG -2473 NM_001271926 10295 Hs.513520 NM_005881 ENSG00000103507 BCKDK BCKDKD|BDK branched chain keto acid dehydrogenase kinase protein-coding 1059.5 chr1 207404815 207405371 + 3.33333 NA Intergenic Intergenic -49207 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 1427.83 chr19 51338422 51339247 + 3.33333 NA intron (NM_001163922, intron 5 of 9) intron (NM_001163922, intron 5 of 9) 3290 NM_001163922 147645 Hs.293236 NM_001163922 ENSG00000186806 VSIG10L - V-set and immunoglobulin domain containing 10 like protein-coding 882.668 chr12 89050847 89051483 + 3.33333 NA Intergenic Intergenic -31473 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 522.333-2 chr20 9407842 9408459 + 3.33333 NA intron (NM_000933, intron 18 of 35) intron (NM_000933, intron 18 of 35) 100350 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 375.833-3 chr1 202999256 202999642 + 3.33333 NA intron (NR_036557, intron 1 of 4) intron (NR_036557, intron 1 of 4) 7816 NR_036557 100506747 Hs.642024 NR_036557 LOC100506747 - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog pseudo 303.333-15 chr6 75268575 75268755 + 3.33333 NA intron (NM_018247, intron 1 of 6) MER21C|LTR|ERVL 16127 NM_001143958 55754 Hs.108530 NM_018247 ENSG00000112697 TMEM30A C6orf67|CDC50A transmembrane protein 30A protein-coding 979.167 chr12 7108321 7108910 + 3.33333 NA intron (NR_026947, intron 1 of 11) intron (NR_026947, intron 1 of 11) 307 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 890.166 chr1 24201722 24202323 + 3.33333 NA intron (NR_027087, intron 1 of 2) intron (NR_027087, intron 1 of 2) 1782 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 951.001 chr16 11641351 11641827 + 3.33333 NA Intergenic Intergenic -26866 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 604.166 chr8 33334963 33335150 + 3.33333 NA Intergenic Intergenic 138090 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 806.667-2 chr7 786029 786561 + 3.33333 NA non-coding (NR_075098, exon 13 of 13) non-coding (NR_075098, exon 13 of 13) -29262 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 1218.5-3 chr9 129783524 129784371 + 3.33333 NA Intergenic Intergenic -19196 NR_133948 27348 Hs.252682 NM_014506 ENSG00000136816 TOR1B DQ1 torsin family 1 member B protein-coding 740.833 chr11 95764432 95764985 + 3.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 25074 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 1189 chr11 16788227 16788989 + 3.33333 NA 3' UTR (NM_175058, exon 23 of 23) 3' UTR (NM_175058, exon 23 of 23) 49961 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 906.667-2 chr4 70559000 70559869 + 3.33333 NA Intergenic Intergenic -32822 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 710.333 chr7 29609542 29610179 + 3.33333 NA Intergenic Intergenic 44327 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 702.667-2 chr8 106764912 106765485 + 3.33333 NA intron (NM_139166, intron 1 of 1) intron (NM_139166, intron 1 of 1) 5046 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 586.333-2 chr9 95167726 95168379 + 3.33333 NA intron (NM_001243744, intron 6 of 13) intron (NM_001243744, intron 6 of 13) -81958 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 1592.17 chr14 53054488 53055701 + 3.33333 NA intron (NM_030637, intron 10 of 11) intron (NM_030637, intron 10 of 11) 98229 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 722.499 chr20 31560620 31561287 + 3.33333 NA intron (NM_178580, intron 9 of 12) intron (NM_178580, intron 9 of 12) 12310 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 1018.5 chr18 68735984 68736895 + 3.33333 NA intron (NM_001093729, intron 3 of 9) intron (NM_001093729, intron 3 of 9) 21223 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 569-4 chr5 21803048 21803310 + 3.33333 NA intron (NM_004061, intron 9 of 14) intron (NM_004061, intron 9 of 14) -81275 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 940.667 chr11 57349553 57350291 + 3.33333 NA intron (NM_002559, intron 7 of 11) CpG 11570 NM_002559 5024 Hs.146738 NM_002559 ENSG00000109991 P2RX3 P2X3 purinergic receptor P2X 3 protein-coding 886.167 chr9 132901747 132902404 + 3.33333 NA intron (NM_000368, intron 18 of 22) MER119|DNA|hAT-Charlie 23177 NM_001316900 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 484.833 chr14 71143531 71144093 + 3.33333 NA Intergenic MER21C|LTR|ERVL -176664 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 571.333 chr20 15641780 15641953 + 3.33333 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 281448 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 735-2 chr22 21629999 21630531 + 3.33333 NA promoter-TSS (NR_163923) promoter-TSS (NR_163923) -243 NR_163924 1661.5 chr1 209190439 209191232 + 3.33333 NA Intergenic Intergenic -134621 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 718.333-3 chr2 47323029 47324036 + 3.33333 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -11783 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 487.5-11 chr5 90265433 90265853 + 3.33333 NA intron (NR_120601, intron 1 of 5) intron (NR_120601, intron 1 of 5) 24428 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 1442.67-2 chr12 39990434 39991096 + 3.33333 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 115316 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 737.334 chr2 138829341 138829743 + 3.33333 NA Intergenic Intergenic -49152 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 674.333 chr1 79496864 79497722 + 3.33333 NA Intergenic Intergenic -490563 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 654.499 chr17 71237732 71238005 + 3.33333 NA Intergenic Intergenic -35689 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1124.33 chr4 82201812 82202814 + 3.33333 NA Intergenic L1MA3|LINE|L1 171678 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 1297.5 chr19 40425259 40426471 + 3.33333 NA intron (NM_013376, intron 1 of 1) CpG 127 NM_013376 29950 Hs.269898 NM_013376 ENSG00000197019 SERTAD1 SEI1|TRIP-Br1|TRIPBR1 SERTA domain containing 1 protein-coding 706.167 chr1 96362436 96362757 + 3.33333 NA intron (NR_110693, intron 1 of 5) L2a|LINE|L2 11529 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 1170.5 chr20 61262860 61263524 + 3.33333 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 10931 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 1240.17-2 chr2 106572503 106573131 + 3.33333 NA Intergenic Intergenic 85453 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 1118.33 chr20 43448738 43449402 + 3.33333 NA Intergenic L3|LINE|CR1 -8826 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 810.333 chr12 53159278 53159963 + 3.33333 NA intron (NM_001244705, intron 16 of 16) intron (NM_001244705, intron 16 of 16) 4873 NM_001244706 51380 Hs.279815 NM_015989 ENSG00000139631 CSAD CSD|PCAP cysteine sulfinic acid decarboxylase protein-coding 533.833 chr1 173431329 173431605 + 3.33333 NA intron (NR_125960, intron 1 of 1) intron (NR_125960, intron 1 of 1) 29895 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 1498 chr6 80605337 80605922 + 3.33333 NA Intergenic Intergenic 498958 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 627.833 chr12 13941867 13942361 + 3.33333 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 38242 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 619-3 chr2 55232345 55232666 + 3.33333 NA promoter-TSS (NM_001353785) promoter-TSS (NM_001353785) 58 NM_001135598 130162 Hs.347014 NM_152385 ENSG00000162994 CLHC1 C2orf63 clathrin heavy chain linker domain containing 1 protein-coding 1135.83 chr12 85951696 85952300 + 3.33333 NA Intergenic Intergenic 77703 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 372-16 chr8 122575896 122576119 + 3.33333 NA Intergenic Intergenic -7363 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 227.833-11 chr19 18251957 18252035 + 3.33333 NA intron (NR_036575, intron 2 of 3) intron (NR_036575, intron 2 of 3) 3423 NR_036575 729966 Hs.710873 NR_036575 ENSG00000284797 LOC729966 - uncharacterized LOC729966 ncRNA 673.167-4 chr6 151675482 151675854 + 3.33333 NA Intergenic Intergenic -14828 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 713.667 chr20 46307023 46307472 + 3.33333 NA intron (NM_021248, intron 1 of 11) intron (NM_021248, intron 1 of 11) 1251 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 605.5 chr15 65270739 65271377 + 3.33333 NA exon (NM_017851, exon 2 of 6) exon (NM_017851, exon 2 of 6) 14533 NR_145768 109617003 NR_145768 ENSG00000206903 SNORA24B - small nucleolar RNA, H/ACA box 24B snoRNA 1162.67 chr11 73335194 73335934 + 3.33333 NA intron (NM_014786, intron 1 of 20) intron (NM_014786, intron 1 of 20) -26203 NR_147696 100287837 Hs.573929 NR_147696 ENSG00000257038 LOC100287837 - uncharacterized LOC100287837 ncRNA 760.501 chr12 127108531 127109054 + 3.33333 NA Intergenic Intergenic -48395 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 754.5-2 chr4 169492721 169493530 + 3.33333 NA intron (NM_001199400, intron 20 of 32) L1P4a|LINE|L1 119458 NM_001199399 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 397.5-5 chr11 36258938 36259230 + 3.33333 NA Intergenic Intergenic 30340 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 802.5-2 chr2 39124518 39124824 + 3.33333 NA Intergenic L2|LINE|L2 -4208 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 1435.83 chr2 70553797 70554842 + 3.33333 NA promoter-TSS (NM_001099691) promoter-TSS (NM_001099691) -493 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 514-2 chr8 47203061 47203335 + 3.33333 NA Intergenic Intergenic 13891 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 961.333-2 chr19 982655 983396 + 3.33333 NA Intergenic CpG -1303 NM_024100 57418 Hs.325321 NM_024100 ENSG00000065268 WDR18 Ipi3|R32184_1 WD repeat domain 18 protein-coding 656.333 chr10 126504056 126504703 + 3.33333 NA non-coding (NR_146939, exon 4 of 12) non-coding (NR_146939, exon 4 of 12) 17114 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 1037.67 chr12 77011160 77011593 + 3.33333 NA Intergenic Charlie2b|DNA|hAT-Charlie 54193 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 890.333 chr19 50046636 50047444 + 3.33333 NA exon (NM_001006656, exon 5 of 5) exon (NM_001006656, exon 5 of 5) -3549 NR_138096 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 440.333-4 chr2 128244471 128244611 + 3.33333 NA Intergenic L1MC1|LINE|L1 74327 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 1113.17 chr2 177724455 177725118 + 3.33333 NA intron (NM_001077197, intron 13 of 20) intron (NM_001077197, intron 13 of 20) 51464 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 551.999-2 chr15 51776850 51777241 + 3.33333 NA intron (NM_001142885, intron 5 of 8) intron (NM_001142885, intron 5 of 8) 25448 NM_014548 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 277.333 chr1 39410984 39411161 + 3.33333 NA exon (NM_015038, exon 1 of 1) exon (NM_015038, exon 1 of 1) 1999 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 619.667 chr12 44982739 44983363 + 3.33333 NA Intergenic L1ME1|LINE|L1 68048 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 522.666 chr1 171644666 171645298 + 3.33333 NA intron (NM_000261, intron 1 of 2) intron (NM_000261, intron 1 of 2) 7706 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 1041 chr5 141968531 141969200 + 3.33333 NA promoter-TSS (NM_004290) promoter-TSS (NM_004290) -21 NM_183400 9604 Hs.483616 NM_004290 ENSG00000013561 RNF14 ARA54|HFB30|HRIHFB2038|TRIAD2 ring finger protein 14 protein-coding 1682.17 chr15 74373566 74374790 + 3.33333 NA Intergenic CpG -4904 NR_146881 105370894 NR_146881 LINC02255 - long intergenic non-protein coding RNA 2255 ncRNA 844.833 chr3 147192002 147192602 + 3.33333 NA Intergenic Intergenic 200128 NR_033119 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 1100.33-2 chr15 79455241 79455884 + 3.33333 NA intron (NM_015206, intron 1 of 3) L1ME1|LINE|L1 23046 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 354-8 chr18 12377455 12377762 + 3.33333 NA promoter-TSS (NM_006796) promoter-TSS (NM_006796) -332 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 1182-3 chr2 149561269 149562085 + 3.33333 NA Intergenic Intergenic -25681 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 1111.83 chr10 97072770 97073239 + 3.33333 NA intron (NM_003061, intron 4 of 36) intron (NM_003061, intron 4 of 36) -29752 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 331.167-14 chr6 971085 971230 + 3.33333 NA intron (NR_027116, intron 2 of 3) intron (NR_027116, intron 2 of 3) 102659 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 1111.83-2 chr8 123022344 123023025 + 3.33333 NA exon (NM_001363963, exon 4 of 7) exon (NM_001363963, exon 4 of 7) 3088 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 264-17 chr16 71961534 71961670 + 3.33333 NA intron (NM_181536, intron 16 of 29) MLT1H1|LTR|ERVL-MaLR 38376 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 985 chr10 110610211 110610714 + 3.33333 NA Intergenic Intergenic -33874 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 352.5-4 chr12 2813558 2814176 + 3.33333 NA promoter-TSS (NR_146317) promoter-TSS (NR_146317) -943 NR_146317 283440 Hs.448720 NR_033958 ENSG00000256150 ITFG2-AS1 - ITFG2 antisense RNA 1 ncRNA 287-7 chr14 21825261 21825529 + 3.33333 NA Intergenic Intergenic -154378 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 1192.83-2 chr7 78020239 78020983 + 3.33333 NA intron (NM_001301128, intron 20 of 20) MER30|DNA|hAT-Charlie 180481 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 985.5 chr6 132962628 132963243 + 3.33333 NA Intergenic Intergenic -125145 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 696.168 chr10 30687413 30688174 + 3.33333 NA Intergenic Intergenic -4481 NR_036438 645954 Hs.408581 NR_036438 SVIL2P SVILP1 supervillin family member 2, pseudogene pseudo 1712.83 chr12 85872463 85873315 + 3.33333 NA Intergenic Intergenic -1406 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 590 chr22 46767470 46767664 + 3.33333 NA intron (NR_104292, intron 1 of 13) L2a|LINE|L2 3825 NR_104292 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 997.001 chr12 80763775 80764462 + 3.33333 NA intron (NR_120468, intron 2 of 4) intron (NR_120468, intron 2 of 4) 964 NR_120469 101928420 Hs.739989 NR_120468 ENSG00000257741 LINC01490 - long intergenic non-protein coding RNA 1490 ncRNA 666.833 chr8 112055671 112056127 + 3.33333 NA Intergenic L1PA15|LINE|L1 -587594 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 958-3 chr2 191030551 191031241 + 3.33333 NA non-coding (NR_136318, exon 2 of 3) non-coding (NR_136318, exon 2 of 3) 9370 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 655.833 chr4 174632139 174632583 + 3.33333 NA Intergenic Intergenic -109463 NM_001256306 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 626.167 chr12 45990319 45990931 + 3.33333 NA promoter-TSS (NM_004719) promoter-TSS (NM_004719) -51 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 1073-2 chr20 50165531 50166334 + 3.33333 NA Intergenic Intergenic -6638 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 638.333 chr3 38024921 38025259 + 3.33333 NA promoter-TSS (NR_024071) promoter-TSS (NR_024071) -570 NR_024071 5333 Hs.80776 NM_006225 ENSG00000187091 PLCD1 NDNC3|PLC-III phospholipase C delta 1 protein-coding 1225.33 chr2 7083907 7084844 + 3.33333 NA Intergenic L1P4a|LINE|L1 -6495 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 939 chr11 116879615 116880241 + 3.33333 NA intron (NM_001366686, intron 6 of 24) intron (NM_001366686, intron 6 of 24) -41978 NM_001318021 335 Hs.93194 NM_000039 ENSG00000118137 APOA1 apo(a) apolipoprotein A1 protein-coding 443.5 chr1 95805874 95806098 + 3.33333 NA Intergenic L2c|LINE|L2 -186082 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 1091.67 chr1 27154964 27155638 + 3.33333 NA promoter-TSS (NM_003047) promoter-TSS (NM_003047) -176 NR_046474 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 790-4 chr3 63786785 63787230 + 3.33333 NA Intergenic Intergenic -32292 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 706.166 chr1 40774127 40774555 + 3.33333 NA Intergenic Intergenic -9446 NM_004700 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 918.499 chr11 43282887 43283543 + 3.33333 NA Intergenic Intergenic -13846 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 913.334 chr11 61733326 61734017 + 3.33333 NA intron (NM_006133, intron 9 of 19) L2a|LINE|L2 -18965 NM_001127392 745 Hs.473109 NM_013279 ENSG00000124920 MYRF 11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 1267-3 chr5 140157062 140157589 + 3.33333 NA promoter-TSS (NR_130738) promoter-TSS (NR_130738) 6 NR_130738 101929719 Hs.150064 NR_130738 ENSG00000254363 LOC101929719 - uncharacterized LOC101929719 ncRNA 507.167-4 chr6 24695361 24695937 + 3.33333 NA intron (NM_001160094, intron 2 of 3) L2c|LINE|L2 23505 NM_030939 81688 Hs.744857 NM_030939 ENSG00000112308 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 646.667-2 chr19 46850847 46851442 + 3.33333 NA promoter-TSS (NM_001301081) promoter-TSS (NM_001301081) -298 NM_021575 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 subunit sigma 1 protein-coding 675-4 chrX 40651351 40651805 + 3.33333 NA 3' UTR (NM_004229, exon 31 of 31) 3' UTR (NM_004229, exon 31 of 31) -4017 NM_144970 159013 Hs.495961 NM_144970 ENSG00000185753 CXorf38 - chromosome X open reading frame 38 protein-coding 457.5-2 chr22 37432129 37432605 + 3.33333 NA Intergenic Intergenic -4888 NM_052906 114794 Hs.344170 NM_052906 ENSG00000166897 ELFN2 LRRC62|PPP1R29 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding 513-5 chr8 93571988 93572219 + 3.33333 NA intron (NR_033858, intron 5 of 10) intron (NR_033858, intron 5 of 10) 128330 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 775 chr18 62957734 62958644 + 3.33333 NA intron (NM_194449, intron 12 of 16) AluSx|SINE|Alu 242648 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 1077.67 chrX 73127512 73128272 + 3.33333 NA non-coding (NR_027291, exon 1 of 1) non-coding (NR_027291, exon 1 of 1) 188 NR_027291 645996 Hs.617486 NR_027291 ENSG00000204118 NAP1L6 - nucleosome assembly protein 1 like 6 pseudo 444-4 chr19 19063648 19063908 + 3.33333 NA promoter-TSS (NM_001321544) promoter-TSS (NM_001321544) -216 NM_001321544 284439 Hs.303669 NM_178526 ENSG00000181035 SLC25A42 MECREN solute carrier family 25 member 42 protein-coding 681.166-2 chr2 128233680 128233976 + 3.33333 NA Intergenic Intergenic 85040 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 548.5-2 chr17 82554385 82554874 + 3.33333 NA intron (NM_004514, intron 1 of 8) intron (NM_004514, intron 1 of 8) 34897 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 1752.83 chr14 89040082 89041311 + 3.33333 NA Intergenic Intergenic 216045 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 1253.17-2 chr6 132822557 132823372 + 3.33333 NA Intergenic Intergenic 5745 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 1119.17-2 chr14 43894405 43895306 + 3.33333 NA Intergenic LTR16E2|LTR|ERVL 612428 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1260.83 chr1 200307201 200307914 + 3.33333 NA Intergenic Intergenic 66235 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 766.834 chr5 98349226 98350154 + 3.33333 NA Intergenic L1MA4|LINE|L1 -188451 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 438-2 chr12 66036286 66036494 + 3.33333 NA Intergenic Intergenic -5324 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 654.333 chr1 14915170 14915513 + 3.33333 NA intron (NM_201628, intron 1 of 14) MIRb|SINE|MIR -8788 NM_001370229 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 370.333-8 chr22 29813735 29814170 + 3.33333 NA intron (NM_001369943, intron 5 of 17) MIRc|SINE|MIR 24322 NM_001369926 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 970 chr2 126971841 126972430 + 3.33333 NA Intergenic CpG 73245 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 575.5-4 chr7 48257654 48258049 + 3.33333 NA intron (NM_152701, intron 15 of 61) L1PA16|LINE|L1 86393 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 353-8 chr19 1438042 1438397 + 3.33333 NA promoter-TSS (NM_001018) promoter-TSS (NM_001018) -145 NM_001018 6209 Hs.406683 NM_001018 ENSG00000115268 RPS15 RIG|S15 ribosomal protein S15 protein-coding 1086.33-2 chr18 44325697 44326511 + 3.33333 NA intron (NR_110792, intron 3 of 4) intron (NR_110792, intron 3 of 4) 205593 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 992.333 chr4 33060992 33061543 + 3.33333 NA Intergenic Intergenic 710229 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1175.33-2 chr17 73369582 73370423 + 3.33333 NA intron (NM_001144952, intron 36 of 44) intron (NM_001144952, intron 36 of 44) -58001 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 836 chr2 68282987 68283611 + 3.33333 NA TTS (NM_001111101) TTS (NM_001111101) -30767 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 948.667 chr8 39056929 39057348 + 3.33333 NA intron (NR_027638, intron 14 of 20) Tigger3a|DNA|TcMar-Tigger -38453 NR_145988 109616979 NR_145736 ENSG00000207199 SNORD38D - small nucleolar RNA, C/D box 38D snoRNA 755.5-3 chr8 74966667 74967297 + 3.33333 NA Intergenic Intergenic -17523 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 1025 chr6 122730601 122731209 + 3.33333 NA Intergenic Intergenic -18296 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 605.833 chr1 200838193 200838691 + 3.33333 NA intron (NM_001297707, intron 7 of 17) intron (NM_001297707, intron 7 of 17) -34539 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 1066.83 chr1 22976270 22976884 + 3.33333 NA Intergenic Intergenic -3711 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 783.999 chr3 150721230 150721725 + 3.33333 NA Intergenic Intergenic 17502 NR_121674 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 1029.83 chr1 88303037 88303850 + 3.33333 NA Intergenic Intergenic -380701 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 723.333 chr6 100001494 100002066 + 3.33333 NA intron (NR_038384, intron 2 of 2) intron (NR_038384, intron 2 of 2) -7542 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 705.667 chr20 50929468 50929914 + 3.33333 NA intron (NM_001282531, intron 1 of 5) intron (NM_001282531, intron 1 of 5) -1293 NR_110007 101927631 Hs.301898 NR_110007 ENSG00000259456 ADNP-AS1 - ADNP antisense RNA 1 ncRNA 731.833 chr1 176559420 176560032 + 3.33333 NA intron (NM_021936, intron 2 of 4) intron (NM_021936, intron 2 of 4) 96551 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 639.333-2 chr6 27126819 27127265 + 3.33333 NA Intergenic Intergenic 5754 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 664.666 chr13 31236384 31236790 + 3.33333 NA intron (NM_194318, intron 4 of 14) intron (NM_194318, intron 4 of 14) 36612 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 706.999-2 chr3 40327455 40327851 + 3.33333 NA Intergenic Intergenic 17946 NM_005875 10289 Hs.315230 NM_005875 ENSG00000114784 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 513.334-2 chr21 29221240 29221547 + 3.33333 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 27899 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 773.833 chr12 54958023 54958473 + 3.33333 NA intron (NR_147062, intron 11 of 12) intron (NR_147062, intron 11 of 12) 15484 NM_001351148 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 1536.83 chr5 174044982 174045964 + 3.33333 NA promoter-TSS (NM_015980) promoter-TSS (NM_015980) -233 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 589.833-2 chr19 2069843 2070266 + 3.33333 NA TTS (NM_130807) TTS (NM_130807) -18810 NM_199054 2872 Hs.515032 NM_017572 ENSG00000099875 MKNK2 GPRK7|MNK2 MAPK interacting serine/threonine kinase 2 protein-coding 1277 chr7 10412660 10413359 + 3.33333 NA Intergenic Intergenic -289667 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 826.666-2 chr2 41414289 41414657 + 3.33333 NA Intergenic Intergenic -463082 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 275.833-6 chr11 43278778 43278888 + 3.33333 NA Intergenic Intergenic -9464 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 815.333-2 chr3 148943712 148944349 + 3.33333 NA Intergenic Intergenic -47378 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 1412-2 chr3 353746 354988 + 3.33333 NA intron (NM_001253388, intron 8 of 24) intron (NM_001253388, intron 8 of 24) 31428 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 1156 chr11 121591356 121592218 + 3.33333 NA intron (NM_003105, intron 31 of 47) intron (NM_003105, intron 31 of 47) 139473 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 1185.5 chr2 164559790 164560788 + 3.33333 NA intron (NM_004490, intron 2 of 13) intron (NM_004490, intron 2 of 13) 8206 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 589.833 chr18 63155356 63155663 + 3.33333 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 163871 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 723.834 chr11 62171120 62171809 + 3.33333 NA Intergenic Intergenic -18752 NM_006552 10648 Hs.202686 NM_006552 ENSG00000168515 SCGB1D1 LIPA|LPHA|LPNA secretoglobin family 1D member 1 protein-coding 726.166 chr3 24963539 24963951 + 3.33333 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 134422 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 1164.67-2 chr10 95183083 95183902 + 3.33333 NA Intergenic CpG -10708 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 556 chr2 72859586 72860021 + 3.33333 NA Intergenic Intergenic -27605 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 959.166 chr5 15003323 15004097 + 3.33333 NA Intergenic Intergenic -131932 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 1173-3 chr15 39583210 39584214 + 3.33333 NA intron (NM_003246, intron 4 of 21) intron (NM_003246, intron 4 of 21) 2633 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 843.833-2 chr5 151164709 151165649 + 3.33333 NA Intergenic Intergenic -7400 NM_001363114 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 430-5 chr5 125864026 125864169 + 3.33333 NA Intergenic Intergenic -315480 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 380.666-2 chr17 19327185 19327561 + 3.33333 NA intron (NM_014964, intron 7 of 10) L1ME3B|LINE|L1 17201 NR_031591 100302256 NR_031591 ENSG00000221540 MIR1180 MIRN1180|hsa-mir-1180|mir-1180 microRNA 1180 ncRNA 902.334 chr3 22117235 22118384 + 3.33333 NA Intergenic Intergenic 160670 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 513.834 chr16 74430224 74430638 + 3.33333 NA Intergenic MLT2D|LTR|ERVL -8961 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 500-5 chr4 163109319 163109547 + 3.33333 NA Intergenic Intergenic -15805 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 794.834 chr1 7752835 7753504 + 3.33333 NA intron (NM_001349624, intron 11 of 11) intron (NM_001349624, intron 11 of 11) -18127 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 497.501 chr2 197206911 197207286 + 3.33333 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) 9107 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 827.5 chr20 39080992 39081761 + 3.33333 NA Intergenic Intergenic 119032 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 664.666-3 chr6 163170946 163171186 + 3.33333 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 20936 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 1512.17 chr2 159806972 159808068 + 3.33333 NA intron (NM_002349, intron 33 of 34) intron (NM_002349, intron 33 of 34) -9265 NM_001198764 9936 Hs.130014 NM_014880 ENSG00000241399 CD302 BIMLEC|CLEC13A|DCL-1|DCL1 CD302 molecule protein-coding 992 chr12 69290924 69291456 + 3.33333 NA Intergenic Intergenic -17972 NR_031692 100302182 NR_031692 ENSG00000283476 MIR1279 MIRN1279|hsa-mir-1279 microRNA 1279 ncRNA 560.667-4 chr19 8268802 8269089 + 3.33333 NA Intergenic LTR13|LTR|ERVK 39413 NM_016579 51293 Hs.558499 NM_016579 ENSG00000167775 CD320 8D6|8D6A|TCBLR|TCN2R CD320 molecule protein-coding 333.166-10 chr7 33800244 33800425 + 3.33333 NA Intergenic Intergenic -104581 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 376.167-7 chr17 51372730 51372918 + 3.33333 NA Intergenic MLT1J1|LTR|ERVL-MaLR 36109 NR_122104 440446 Hs.626751 NR_122104 ENSG00000267452 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 493.167-5 chrX 106894171 106894623 + 3.33333 NA Intergenic MIRb|SINE|MIR -5767 NM_001171092 9075 Hs.522746 NM_020384 ENSG00000165376 CLDN2 - claudin 2 protein-coding 799.5 chr8 40033895 40034427 + 3.33333 NA Intergenic Intergenic 99206 NM_194294 169355 Hs.676257 NM_194294 ENSG00000188676 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 660.333 chr15 70679578 70680016 + 3.33333 NA intron (NM_018003, intron 9 of 18) intron (NM_018003, intron 9 of 18) 22485 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 608.334-4 chr3 102225530 102225983 + 3.33333 NA Intergenic MIR3|SINE|MIR 62051 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 942.333 chr10 25226997 25227799 + 3.33333 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -51122 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 1309.33-2 chr18 73842446 73843332 + 3.33333 NA Intergenic Intergenic 304945 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 474.167 chr12 55817764 55818133 + 3.33333 NA promoter-TSS (NM_014182) promoter-TSS (NM_014182) -93 NM_014182 29095 Hs.534450 NM_014182 ENSG00000123353 ORMDL2 HSPC160|MST095|MSTP095|adoplin-2 ORMDL sphingolipid biosynthesis regulator 2 protein-coding 674.833 chr1 117067557 117067950 + 3.33333 NA intron (NM_003594, intron 3 of 22) intron (NM_003594, intron 3 of 22) 7427 NM_003594 8458 Hs.32333 NM_003594 ENSG00000116830 TTF2 HuF2|ZGRF6 transcription termination factor 2 protein-coding 1310.5-2 chr8 125118190 125118778 + 3.33333 NA intron (NM_001349486, intron 3 of 7) MER5A|DNA|hAT-Charlie 26624 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 507.999 chr11 20647119 20647347 + 3.33333 NA intron (NM_004211, intron 14 of 15) (TA)n|Simple_repeat|Simple_repeat -22318 NM_001288713 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 706.333-3 chrX 96112877 96113302 + 3.33333 NA Intergenic L1MA9|LINE|L1 224813 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 774.333-2 chr5 58461223 58461828 + 3.33333 NA Intergenic MER34C_|LTR|ERV1 -1386 NM_001252226 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 418.333-2 chr16 84618834 84619019 + 3.33333 NA promoter-TSS (NM_021149) promoter-TSS (NM_021149) -848 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 491 chr1 152976863 152977405 + 3.33333 NA Intergenic Intergenic 6486 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 489.333-7 chr8 124538106 124538628 + 3.33333 NA promoter-TSS (NM_005005) promoter-TSS (NM_005005) 718 NM_032026 83940 Hs.170568 NM_032026 ENSG00000147687 TATDN1 CDA11 TatD DNase domain containing 1 protein-coding 839.833 chr2 61658842 61659289 + 3.33333 NA Intergenic Intergenic -120709 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 929 chr14 75653963 75654773 + 3.33333 NA intron (NM_007176, intron 3 of 4) intron (NM_007176, intron 3 of 4) 6508 NM_007176 11161 Hs.15106 NM_007176 ENSG00000133935 ERG28 C14orf1|NET51 ergosterol biosynthesis 28 homolog protein-coding 912.666 chr15 45162769 45163461 + 3.33333 NA intron (NM_175940, intron 31 of 33) intron (NM_175940, intron 31 of 33) 18092 NM_001301171 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 419.833-4 chr19 51259489 51259794 + 3.33333 NA intron (NM_173635, intron 1 of 5) MER21-int|LTR|ERVL 1931 NM_173635 284369 Hs.381087 NM_173635 ENSG00000179213 SIGLECL1 C19orf75|SIGLEC23P|SIGLECP7 SIGLEC family like 1 protein-coding 671.833-2 chr3 193461599 193462056 + 3.33333 NA intron (NM_032279, intron 13 of 29) intron (NM_032279, intron 13 of 29) -83074 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 1430.83 chr9 111759450 111760548 + 3.33333 NA promoter-TSS (NM_001080551) promoter-TSS (NM_001080551) -463 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 848.834 chr5 138503928 138504444 + 3.33333 NA Intergenic Intergenic 37525 NM_001291974 2107 Hs.483494 NM_004730 ENSG00000120705 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 459.166 chr2 230691045 230691295 + 3.33333 NA non-coding (NR_040038, exon 4 of 4) non-coding (NR_040038, exon 4 of 4) 9359 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 1094.33 chr7 121107581 121108460 + 3.33333 NA intron (NM_001105533, intron 6 of 17) intron (NM_001105533, intron 6 of 17) 118629 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 885.166 chr12 12704657 12705335 + 3.33333 NA Intergenic Intergenic -8813 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 1603.83-2 chr3 79497277 79498460 + 3.33333 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -10019 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 787.5-2 chr15 71448463 71449208 + 3.33333 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -98401 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 1062.67 chr7 134547217 134547835 + 3.33333 NA Intergenic HERVI-int|LTR|ERV1 -1584 NM_001080538 441282 Hs.729418 NM_001080538 ENSG00000227471 AKR1B15 AKR1B10L|AKR1B10L, AK1R1B7|AKR1R1B7 aldo-keto reductase family 1 member B15 protein-coding 654.5 chr10 132453284 132453527 + 3.33333 NA Intergenic CpG 8216 NR_149317 170393 Hs.375059 NR_149317 C10orf91 - chromosome 10 open reading frame 91 (putative) ncRNA 851.5 chr3 123642238 123642986 + 3.33333 NA intron (NM_001321309, intron 26 of 32) intron (NM_001321309, intron 26 of 32) -22064 NM_053032 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 997.668 chr1 67760234 67760875 + 3.33333 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) -71734 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 684.666 chr17 55735863 55736318 + 3.33333 NA Intergenic Intergenic -4009 NM_001099640 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 557.833 chr13 72808769 72809082 + 3.33333 NA intron (NR_146206, intron 5 of 16) intron (NR_146206, intron 5 of 16) 26792 NM_001349655 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 609.666 chr3 79517782 79518221 + 3.33333 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 10114 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 1065.67-2 chr11 30855143 30856017 + 3.33333 NA Intergenic Intergenic 137106 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 1107.67 chr11 34890801 34891618 + 3.33333 NA intron (NM_015957, intron 2 of 6) intron (NM_015957, intron 2 of 6) -24921 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 708.666 chr2 120680213 120680478 + 3.33333 NA Intergenic Intergenic -55523 NM_001371271 792.833 chr4 162496969 162497979 + 3.33333 NA Intergenic Intergenic -333440 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 490.666 chr1 36275953 36276472 + 3.33333 NA intron (NM_001321471, intron 3 of 12) L1M4|LINE|L1 -30156 NM_001162530 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 1893.84 chr5 147576925 147577907 + 3.33333 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 17422 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 1128 chr12 125403168 125403876 + 3.33333 NA intron (NM_052907, intron 2 of 8) intron (NM_052907, intron 2 of 8) 76906 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 1162.83 chr3 112582015 112582644 + 3.33333 NA intron (NM_001348908, intron 4 of 4) intron (NM_001348908, intron 4 of 4) 19640 NR_109779 100506621 Hs.86538 NR_109779 LINC01279 - long intergenic non-protein coding RNA 1279 ncRNA 734.333 chr1 77200433 77200942 + 3.33333 NA intron (NM_005482, intron 3 of 10) intron (NM_005482, intron 3 of 10) 18743 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 709.667 chr10 69179659 69179953 + 3.33333 NA promoter-TSS (NM_001301683) promoter-TSS (NM_001301683) -428 NR_136627 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 441.833-5 chr3 50235680 50235991 + 3.33333 NA promoter-TSS (NM_002070) promoter-TSS (NM_002070) -369 NM_001282618 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 670.499-3 chr2 166181720 166182043 + 3.33333 NA intron (NR_110260, intron 3 of 11) L1P4d|LINE|L1 -32720 NM_001353950 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 737.167 chr22 31633822 31634237 + 3.33333 NA intron (NM_001326416, intron 3 of 10) intron (NM_001326416, intron 3 of 10) -3205 NM_014338 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 1311.67 chr13 36735729 36736680 + 3.33333 NA Intergenic Intergenic 62184 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 1178.67-2 chr1 196148032 196148545 + 3.33333 NA Intergenic Intergenic -59573 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 895.334-2 chr14 60266128 60266641 + 3.33333 NA intron (NM_177951, intron 2 of 3) L1M6|LINE|L1 17163 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 486.667-7 chr9 35905946 35906202 + 3.33333 NA promoter-TSS (NM_001039792) promoter-TSS (NM_001039792) -128 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 594.833-3 chr9 129249826 129250093 + 3.33333 NA Intergenic L1MB7|LINE|L1 -32457 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 402.667-8 chr16 72740715 72740904 + 3.33333 NA Intergenic Intergenic -75839 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 708.834 chr12 64698023 64698458 + 3.33333 NA TTS (NM_178169) TTS (NM_178169) 61166 NM_002076 2799 Hs.334534 NM_002076 ENSG00000135677 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 1749.33 chr6 53492454 53493600 + 3.33333 NA Intergenic Intergenic 52074 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 293.166 chr10 117537573 117537816 + 3.33333 NA intron (NR_002791, intron 2 of 3) CpG -4751 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 906.666 chr8 89616891 89617554 + 3.33333 NA Intergenic Intergenic 140489 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 574.167-4 chr19 40528837 40529445 + 3.33333 NA intron (NM_020971, intron 18 of 35) intron (NM_020971, intron 18 of 35) -1350 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 344.5-18 chrX 63595691 63595976 + 3.33333 NA Intergenic L1MA3|LINE|L1 -34738 NR_152609 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 1220.67 chr2 112958735 112959618 + 3.33333 NA Intergenic L2a|LINE|L2 -18830 NM_001278568 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 916.833 chr4 54318589 54319299 + 3.33333 NA Intergenic Intergenic -13948 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 774.666-2 chr7 130062906 130063383 + 3.33333 NA Intergenic AluJr|SINE|Alu -7390 NM_014997 23008 Hs.520710 NM_014997 ENSG00000128607 KLHDC10 slim kelch domain containing 10 protein-coding 887.499 chr5 15013687 15014447 + 3.33333 NA Intergenic Intergenic -142289 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 645.833 chr2 168948547 168949035 + 3.33333 NA intron (NM_003742, intron 19 of 27) intron (NM_003742, intron 19 of 27) 47500 NM_001081686 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 852.834 chr7 93902646 93903257 + 3.33333 NA Intergenic MER20B|DNA|hAT-Charlie -3616 NM_021955 2792 Hs.732212 NM_021955 ENSG00000127928 GNGT1 GNG1 G protein subunit gamma transducin 1 protein-coding 735.666 chr1 201385083 201385496 + 3.33333 NA intron (NM_005558, intron 4 of 9) intron (NM_005558, intron 4 of 9) -7609 NM_001001432 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 371-6 chr2 10876598 10876784 + 3.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR -1576 NR_110575 101929733 Hs.736697 NR_110575 ENSG00000271952 LINC01954 - long intergenic non-protein coding RNA 1954 ncRNA 1100 chr2 216518926 216519596 + 3.33333 NA Intergenic Intergenic 20417 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 617.666 chr15 55648272 55648570 + 3.33333 NA intron (NM_173814, intron 11 of 19) intron (NM_173814, intron 11 of 19) -59450 NM_015617 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 907.499 chr10 90751175 90751816 + 3.33333 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 106544 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 788.333-2 chr20 38408428 38409090 + 3.33333 NA Intergenic Intergenic 16571 NR_002910 26776 Hs.400876 NR_002910 ENSG00000235408 SNORA71B RNU71B|U71b small nucleolar RNA, H/ACA box 71B snoRNA 361.833-2 chr2 102592748 102593039 + 3.33333 NA Intergenic Intergenic -26660 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 972.167-3 chr2 204260061 204260702 + 3.33333 NA Intergenic Intergenic -285094 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 636.333-2 chr6 15690940 15691788 + 3.33333 NA Intergenic Intergenic -28306 NM_183040 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 906 chr14 54893114 54893868 + 3.33333 NA intron (NM_001024071, intron 1 of 5) intron (NM_001024071, intron 1 of 5) 9333 NM_001024024 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 874.834 chr5 10283690 10284772 + 3.33333 NA intron (NM_138809, intron 4 of 5) intron (NM_138809, intron 4 of 5) 23671 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 2022.33 chr2 217509981 217511805 + 3.33333 NA intron (NR_026597, intron 2 of 12) L1MC4|LINE|L1 228160 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 630.834-2 chr10 93916379 93916721 + 3.33333 NA Intergenic Intergenic 22572 NM_001134658 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 1123.83 chr3 107421140 107421744 + 3.33333 NA Intergenic Intergenic -9488 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 903.334 chr18 22563074 22563824 + 3.33333 NA Intergenic Intergenic -145534 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 481.668 chr8 130994916 130995203 + 3.33333 NA intron (NM_001115, intron 1 of 17) L1ME4b|LINE|L1 45850 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 925.667 chr2 102848036 102848651 + 3.33333 NA Intergenic L1MC5a|LINE|L1 47379 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 1794.67 chr19 40598204 40599190 + 3.33333 NA intron (NM_001042544, intron 1 of 32) intron (NM_001042544, intron 1 of 32) 1462 NM_001042544 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 793.334-3 chr9 130236307 130236869 + 3.33333 NA 3' UTR (NM_001128826, exon 8 of 8) 3' UTR (NM_001128826, exon 8 of 8) -4799 NR_162140 113219459 NR_162140 MIR12126 - microRNA 12126 ncRNA 922.501 chr19 43446719 43447467 + 3.33333 NA Intergenic Intergenic 18515 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 899.833 chr10 97196357 97196774 + 3.33333 NA intron (NR_037909, intron 11 of 14) intron (NR_037909, intron 11 of 14) -10606 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 526.834 chr1 22416559 22416829 + 3.33333 NA Intergenic Intergenic -35157 NM_014870 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 596.667-2 chr2 112884667 112885432 + 3.33333 NA Intergenic Intergenic -27922 NM_173204 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 1228-2 chr9 136790611 136791811 + 3.33333 NA promoter-TSS (NM_032928) promoter-TSS (NM_032928) -133 NM_032928 85014 Hs.356744 NM_032928 ENSG00000244187 TMEM141 - transmembrane protein 141 protein-coding 1065.67 chr10 79196826 79197444 + 3.33333 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 128169 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 947.333 chr5 54234450 54235108 + 3.33333 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 75794 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 540.167 chr17 50783234 50783579 + 3.33333 NA Intergenic Intergenic 14756 NR_107026 102466918 NR_107026 ENSG00000278672 MIR8059 hsa-mir-8059 microRNA 8059 ncRNA 575.999 chr11 96308509 96308737 + 3.33333 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -32815 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 394.833 chr13 65475876 65476088 + 3.33333 NA Intergenic Intergenic -390065 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 526.834-4 chr7 116176857 116177246 + 3.33333 NA Intergenic MIRc|SINE|MIR -33488 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 675-3 chr9 74570810 74571164 + 3.33333 NA intron (NM_006914, intron 1 of 9) (AATA)n|Simple_repeat|Simple_repeat -44547 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 519.5-3 chr6 41966608 41967229 + 3.33333 NA intron (NM_001136017, intron 1 of 4) intron (NM_001136017, intron 1 of 4) -25070 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 1327.5 chr17 49996805 49997481 + 3.33333 NA Intergenic CpG -1919 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 730 chr19 46515544 46516226 + 3.33333 NA intron (NM_001205281, intron 3 of 3) AluSx3|SINE|Alu -20018 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 511.333 chr1 30778600 30778988 + 3.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR -21020 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 1205.5-2 chr7 30800309 30801160 + 3.33333 NA intron (NR_037598, intron 7 of 19) intron (NR_037598, intron 7 of 19) 29317 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 597.333-2 chr13 44483474 44483899 + 3.33333 NA intron (NM_183422, intron 1 of 2) AluYm1|SINE|Alu -9385 NM_001243798 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 1317.5 chr7 113710267 113710986 + 3.33333 NA Intergenic Intergenic 208383 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 565.333 chr6 117555853 117556136 + 3.33333 NA intron (NM_173674, intron 14 of 14) MIRc|SINE|MIR 46517 NM_020399 57120 Hs.191539 NM_020399 ENSG00000047932 GOPC CAL|FIG|GOPC1|PIST|dJ94G16.2 golgi associated PDZ and coiled-coil motif containing protein-coding 406.333-6 chr22 32985971 32986403 + 3.33333 NA intron (NM_003490, intron 2 of 13) MER91B|DNA|hAT-Tip100 20634 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 921.334 chr2 19363164 19363822 + 3.33333 NA Intergenic Intergenic -4870 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 892 chr14 91286404 91287091 + 3.33333 NA intron (NM_001080414, intron 25 of 29) intron (NM_001080414, intron 25 of 29) -32867 NM_001348437 8111 Hs.8882 NM_003485 ENSG00000119714 GPR68 AI2A6|GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 760.167-2 chr10 133144025 133144411 + 3.33333 NA Intergenic LTR13|LTR|ERVK -16001 NM_001347865 85442 Hs.530685 NM_152643 ENSG00000171798 KNDC1 C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND kinase non-catalytic C-lobe domain containing 1 protein-coding 396-4 chr2 125892598 125892802 + 3.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 225285 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 931.666 chr14 90235322 90236013 + 3.33333 NA Intergenic Intergenic -20886 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 532.666-2 chr12 41319922 41320177 + 3.33333 NA intron (NM_001164595, intron 3 of 9) MamRTE1|LINE|RTE-BovB -117690 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 1219 chr10 12263875 12264903 + 3.33333 NA Intergenic Intergenic 68201 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 1358.17 chr12 91577786 91578397 + 3.33333 NA Intergenic Intergenic -395274 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 719.334 chr11 73295195 73295878 + 3.33333 NA intron (NM_001277207, intron 2 of 2) MIR1_Amn|SINE|MIR -12740 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding 908.833 chr12 31681878 31682491 + 3.33333 NA intron (NR_103522, intron 7 of 8) intron (NR_103522, intron 7 of 8) 22496 NM_001135863 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 559-2 chr10 44857912 44858328 + 3.33333 NA intron (NR_033842, intron 2 of 7) MIRc|SINE|MIR -53196 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 648.833 chr1 165367128 165367760 + 3.33333 NA Intergenic Intergenic -10729 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 1092-2 chr15 70487986 70488775 + 3.33333 NA Intergenic Intergenic 17548 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 616.333 chr10 123582103 123582668 + 3.33333 NA Intergenic Intergenic -83970 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 621.666 chr2 11780909 11781239 + 3.33333 NA intron (NM_001349203, intron 7 of 20) intron (NM_001349203, intron 7 of 20) 13630 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 1038-2 chr6 20291610 20292225 + 3.33333 NA Intergenic Intergenic -79448 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 972 chr14 52299615 52300318 + 3.33333 NA Intergenic Intergenic -14346 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 463.333 chr10 14904373 14904818 + 3.33333 NA TTS (NR_146962) TTS (NR_146962) 25695 NM_024670 79723 Hs.554883 NM_024670 ENSG00000152455 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 protein-coding 1115.33 chr1 62082533 62083287 + 3.33333 NA intron (NM_001350145, intron 32 of 43) intron (NM_001350145, intron 32 of 43) -4054 NR_036059 100422946 NR_036059 ENSG00000283690 MIR3116-2 - microRNA 3116-2 ncRNA 421-8 chr6 47631236 47631510 + 3.33333 NA Intergenic AluJo|SINE|Alu -25099 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 767.834 chr13 36346471 36346858 + 3.33333 NA promoter-TSS (NM_001142296) promoter-TSS (NM_001142296) 133 NM_001142295 23111 Hs.440414 NM_015087 ENSG00000133104 SPART SPG20|TAHCCP1 spartin protein-coding 939.667 chr1 209335023 209335825 + 3.33333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 9968 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 915.334 chr3 56254682 56255281 + 3.33333 NA intron (NR_132749, intron 3 of 17) intron (NR_132749, intron 3 of 17) 213486 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 769.167-3 chr5 129400265 129400927 + 3.33333 NA Intergenic Intergenic -3449 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 480.333-2 chr2 55014902 55015287 + 3.33333 NA intron (NM_153828, intron 1 of 6) intron (NM_153828, intron 1 of 6) -4822 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 816.501 chr19 12777462 12777968 + 3.33333 NA Intergenic Intergenic -2163 NM_013312 29911 Hs.30792 NM_013312 ENSG00000095066 HOOK2 HK2 hook microtubule tethering protein 2 protein-coding 679.167-3 chr7 124856470 124856897 + 3.33333 NA intron (NM_001042594, intron 8 of 17) intron (NM_001042594, intron 8 of 17) -65873 NM_001024603 154872 Hs.444163 NM_001024603 ENSG00000275356 C7orf77 - chromosome 7 open reading frame 77 protein-coding 478-5 chr7 11423111 11423347 + 3.33333 NA intron (NM_015204, intron 15 of 26) L3b|LINE|CR1 408969 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 808-2 chr2 64767454 64768471 + 3.33333 NA Intergenic CpG 95669 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 583.667 chr10 72695321 72695531 + 3.33333 NA intron (NM_001270680, intron 1 of 7) intron (NM_001270680, intron 1 of 7) 2807 NM_001270680 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 1365 chr8 71774422 71776120 + 3.33333 NA Intergenic Intergenic -67852 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 986.166-2 chr7 72494008 72494477 + 3.33333 NA Intergenic Intergenic -47099 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 958.667-2 chr16 67183414 67184128 + 3.33333 NA TTS (NM_178516) TTS (NM_178516) 192 NM_001369684 653319 Hs.651201 NM_001040715 ENSG00000196123 KIAA0895L - KIAA0895 like protein-coding 373.166-2 chr10 30413968 30414236 + 3.33333 NA Intergenic MamGypLTR3a|LTR|Gypsy -19919 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 1199.5 chr9 78820927 78821911 + 3.33333 NA Intergenic MER51A|LTR|ERV1 324247 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 593.166 chr3 150865223 150865486 + 3.33333 NA Intergenic Intergenic 40085 NM_001351281 646951 Hs.380222 NM_001351281 MINDY4B C3orf76|FAM188B2 MINDY family member 4B protein-coding 284.333 chr1 16951827 16951934 + 3.33333 NA intron (NM_014675, intron 20 of 36) MER91B|DNA|hAT-Tip100 28740 NM_002403 4237 Hs.389137 NM_002403 ENSG00000117122 MFAP2 MAGP|MAGP-1|MAGP1 microfibril associated protein 2 protein-coding 547.5-3 chr2 119126788 119127023 + 3.33333 NA Intergenic Intergenic 31846 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 556.167-5 chr12 56636818 56637258 + 3.33333 NA promoter-TSS (NM_013449) promoter-TSS (NM_013449) -679 NM_013449 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 660.334-2 chr12 108618271 108618722 + 3.33333 NA Intergenic Intergenic 13585 NM_001206609 6404 Hs.591014 NM_003006 ENSG00000110876 SELPLG CD162|CLA|PSGL-1|PSGL1 selectin P ligand protein-coding 1250.33-2 chr14 77094522 77095282 + 3.33333 NA Intergenic Intergenic -3356 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 852.166 chr5 126656339 126656983 + 3.33333 NA Intergenic Intergenic 24956 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 476.167-5 chr9 129143082 129143388 + 3.33333 NA intron (NM_178001, intron 10 of 10) intron (NM_178001, intron 10 of 10) 31547 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 743.834-2 chr5 136212045 136212745 + 3.33333 NA TTS (NM_001167576) TTS (NM_001167576) -14260 NR_133682 106478968 Hs.637713 NR_133682 ENSG00000250947 TRPC7-AS2 CTB-28J9.2 TRPC7 antisense RNA 2 ncRNA 570.333-4 chr3 172666966 172667260 + 3.33333 NA intron (NM_001146276, intron 1 of 4) HUERS-P3b-int|LTR|ERV1 43954 NM_001146277 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 847-2 chr15 56245773 56246822 + 3.33333 NA Intergenic Intergenic -1215 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 996.668 chr15 90647825 90648552 + 3.33333 NA intron (NR_120372, intron 2 of 3) intron (NR_120372, intron 2 of 3) -12046 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 942.499 chr6 125956618 125957767 + 3.33333 NA intron (NM_138571, intron 1 of 4) CpG 422 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 742.167-2 chr3 107271312 107272134 + 3.33333 NA intron (NR_028302, intron 1 of 3) intron (NR_028302, intron 1 of 3) 31031 NR_028302 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 577.833 chr17 68534266 68534501 + 3.33333 NA TTS (NM_001369389) TTS (NM_001369389) 18989 NM_001276290 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 745 chr13 102915674 102916191 + 3.33333 NA Intergenic Intergenic 35833 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 648.999 chr9 21812698 21813123 + 3.33333 NA intron (NM_002451, intron 1 of 7) MIR|SINE|MIR 10274 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 655.166-2 chr2 119660205 119660464 + 3.33333 NA Intergenic Intergenic -18833 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 801.334 chr11 99739650 99740294 + 3.33333 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 183827 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 250.167-19 chr9 33778906 33779190 + 3.33333 NA intron (NM_001197098, intron 1 of 4) L1PA16|LINE|L1 -16513 NM_002771 5646 Hs.654513 NM_002771 ENSG00000010438 PRSS3 MTG|PRSS4|T9|TRY3|TRY4 serine protease 3 protein-coding 475.833-6 chr3 116928533 116929001 + 3.33333 NA intron (NR_121607, intron 1 of 1) Charlie19a|DNA|hAT-Charlie 7336 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 609.5 chr10 85547932 85548545 + 3.33333 NA Intergenic L1ME1|LINE|L1 -29493 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 1176.17-2 chr10 26725943 26726716 + 3.33333 NA intron (NM_001321978, intron 8 of 9) intron (NM_001321978, intron 8 of 9) 28628 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 651.166 chr15 80455538 80456269 + 3.33333 NA intron (NM_014862, intron 2 of 18) intron (NM_014862, intron 2 of 18) 51521 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 1527.5 chr2 211744945 211745969 + 3.33333 NA intron (NM_001042599, intron 5 of 26) intron (NM_001042599, intron 5 of 26) 680903 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 826.001 chr2 73212169 73212889 + 3.33333 NA TTS (NM_001134462) TTS (NM_001134462) -1716 NM_006062 10322 Hs.631882 NM_006062 ENSG00000135632 SMYD5 NN8-4AG|RAI15|RRG1|ZMYND23 SMYD family member 5 protein-coding 676 chr13 67238326 67238772 + 3.33333 NA Intergenic Intergenic -8213 NM_001318373 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 665.667 chr19 3163422 3164042 + 3.33333 NA TTS (NM_002068) TTS (NM_002068) -8557 NR_110670 100996351 NR_110670 ENSG00000267551 LOC100996351 - uncharacterized LOC100996351 ncRNA 406.167-3 chr10 77524519 77524910 + 3.33333 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 113094 NM_001271519 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 529.333-5 chr5 73591055 73591634 + 3.33333 NA Intergenic Intergenic 25601 NM_032175 84135 Hs.406703 NM_032175 ENSG00000164338 UTP15 NET21 UTP15 small subunit processome component protein-coding 877 chr9 35696683 35697166 + 3.33333 NA TTS (NM_006289) TTS (NM_006289) -6868 NM_001301227 7169 Hs.300772 NM_003289 ENSG00000198467 TPM2 AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB tropomyosin 2 protein-coding 1807.67 chr1 155084077 155085809 + 3.33333 NA intron (NM_004952, intron 1 of 4) CpG 6106 NM_004952 1944 Hs.516656 NM_004952 ENSG00000143590 EFNA3 EFL2|EPLG3|Ehk1-L|LERK3 ephrin A3 protein-coding 837.333 chr14 95994300 95994789 + 3.33333 NA Intergenic Intergenic -44780 NM_001282464 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 317-3 chr14 65875771 65875912 + 3.33333 NA Intergenic L1PA13|LINE|L1 404739 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 773 chr5 115634479 115635142 + 3.33333 NA Intergenic Intergenic -8631 NM_001164469 100302736 NM_001164468 ENSG00000251201 TMED7-TICAM2 MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM TMED7-TICAM2 readthrough protein-coding 1486.5 chr10 18104277 18105167 + 3.33333 NA Intergenic L2a|LINE|L2 -35702 NM_201571 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 1100.83 chr14 50317867 50318570 + 3.33333 NA intron (NM_001370605, intron 2 of 5) intron (NM_001370605, intron 2 of 5) 5894 NM_001003803 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 848.833-2 chr7 73451653 73452370 + 3.33333 NA intron (NM_001370402, intron 13 of 18) intron (NM_001370402, intron 13 of 18) 18233 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 367.333-3 chr17 65871114 65871334 + 3.33333 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -44681 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 925.5 chr20 34538569 34539069 + 3.33333 NA intron (NR_104032, intron 4 of 4) intron (NR_104032, intron 4 of 4) -8025 NM_181509 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 510-7 chr5 5145871 5146334 + 3.33333 NA intron (NM_139056, intron 2 of 22) intron (NM_139056, intron 2 of 22) 5772 NR_136935 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 662-2 chr3 81242692 81243129 + 3.33333 NA Intergenic Intergenic 249042 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 1146.83-2 chr12 81643854 81645081 + 3.33333 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) -46096 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 643 chr2 46918980 46919278 + 3.33333 NA intron (NM_001288953, intron 2 of 20) intron (NM_001288953, intron 2 of 20) -3017 NM_001171507 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 1028.67-2 chr5 107571819 107572490 + 3.33333 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 98783 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 561.834 chr4 68175663 68176312 + 3.33333 NA Intergenic Intergenic -6305 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 506.667 chr10 63707347 63707790 + 3.33333 NA Intergenic Intergenic -185678 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 825.833 chr10 17230370 17231093 + 3.33333 NA promoter-TSS (NR_108061) promoter-TSS (NR_108061) -746 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 604.501 chr15 44663478 44664046 + 3.33333 NA promoter-TSS (NM_001160227) promoter-TSS (NM_001160227) -100 NM_001160227 80208 Hs.656271 NM_025137 ENSG00000104133 SPG11 ALS5|CMT2X|KIAA1840 SPG11 vesicle trafficking associated, spatacsin protein-coding 600 chr1 90114370 90114942 + 3.33333 NA Intergenic Intergenic 119546 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 2243.17 chr10 100997501 100999735 + 3.33333 NA intron (NM_001318099, intron 1 of 4) CpG-3258 339 NM_001318099 84445 Hs.523221 NM_032429 ENSG00000107816 LZTS2 LAPSER1 leucine zipper tumor suppressor 2 protein-coding 1026-2 chr9 109817440 109818536 + 3.33333 NA intron (NM_053016, intron 1 of 6) intron (NM_053016, intron 1 of 6) 37790 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 1580.5 chr15 89430590 89431565 + 3.33333 NA Intergenic Intergenic 30906 NR_160724 105371031 NR_160724 LOC105371031 - uncharacterized LOC105371031 ncRNA 721.333 chr2 202103946 202104490 + 3.33333 NA intron (NM_001277372, intron 8 of 23) L1ME2|LINE|L1 12840 NR_135244 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 1099.33-2 chr16 72124828 72125328 + 3.33333 NA intron (NM_031293, intron 16 of 20) intron (NM_031293, intron 16 of 20) -30700 NM_001142318 54957 Hs.134406 NM_017853 ENSG00000140830 TXNL4B DLP|Dim2 thioredoxin like 4B protein-coding 651-2 chr10 102583606 102584337 + 3.33333 NA intron (NM_001178133, intron 3 of 10) intron (NM_001178133, intron 3 of 10) -60524 NR_144321 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 394-11 chr5 116035239 116035381 + 3.33333 NA Intergenic Intergenic -16156 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 569.333 chr8 139143320 139143588 + 3.33333 NA Intergenic Intergenic -229413 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 385.833-4 chr2 233443708 233444096 + 3.33333 NA intron (NM_152879, intron 10 of 29) intron (NM_152879, intron 10 of 29) 55748 NM_003648 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 785.666 chr2 71609701 71610374 + 3.33333 NA intron (NM_001130985, intron 36 of 54) MER91B|DNA|hAT-Tip100 143338 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 912.501 chr3 5226726 5227174 + 3.33333 NA Intergenic Intergenic 23305 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 875.5 chr4 31673970 31674946 + 3.33333 NA Intergenic Intergenic 167914 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 1000.17-2 chr11 75554079 75554800 + 3.33333 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -7814 NM_001207014 871 Hs.596449 NM_001235 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46 serpin family H member 1 protein-coding 544.166 chr11 74611128 74611575 + 3.33333 NA intron (NM_001363597, intron 3 of 11) intron (NM_001363597, intron 3 of 11) 18769 NR_046410 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 1442.33 chr1 212595647 212596595 + 3.33333 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) -12640 NM_001206484 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 748-2 chr11 119361080 119361604 + 3.33333 NA intron (NM_001243759, intron 1 of 11) intron (NM_001243759, intron 1 of 11) 2866 NM_171997 9099 Hs.524085 NM_004205 ENSG00000036672 USP2 UBP41|USP9 ubiquitin specific peptidase 2 protein-coding 637.833-2 chr7 18321148 18321537 + 3.33333 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 31250 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 1782 chr20 33291747 33292856 + 3.33333 NA intron (NM_033197, intron 6 of 15) MER63B|DNA|hAT-Blackjack 9087 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 815 chr1 109075607 109076409 + 3.33333 NA promoter-TSS (NM_005645) promoter-TSS (NM_005645) -5 NM_005645 6884 Hs.632426 NM_005645 ENSG00000197780 TAF13 MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18 TATA-box binding protein associated factor 13 protein-coding 1502.17-2 chr16 77169453 77170401 + 3.33333 NA Intergenic Intergenic -21263 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 1335.67 chr8 58395061 58395906 + 3.33333 NA Intergenic Intergenic -15781 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 795.667-2 chrX 80285381 80286191 + 3.33333 NA intron (NR_110646, intron 5 of 5) L1MA6|LINE|L1 49532 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 347-4 chr12 46984141 46984401 + 3.33333 NA Intergenic L1PA8|LINE|L1 -95332 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 810.333-2 chr16 83356356 83356801 + 3.33333 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -151768 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 1073.17 chr6 16182891 16184361 + 3.33333 NA Intergenic Intergenic 42070 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 951.667-2 chr13 111223281 111223858 + 3.33333 NA intron (NM_001330597, intron 5 of 18) intron (NM_001330597, intron 5 of 18) -17605 NM_001354061 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 716.166 chr16 30430060 30430387 + 3.33333 NA promoter-TSS (NR_134471) promoter-TSS (NR_134471) -193 NM_024096 79077 Hs.632191 NM_024096 ENSG00000179958 DCTPP1 CDA03|RS21C6|XTP3TPA dCTP pyrophosphatase 1 protein-coding 693.333-2 chr4 39181995 39182565 + 3.33333 NA promoter-TSS (NM_001317924) promoter-TSS (NM_001317924) -249 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 1074.83 chr16 25838481 25839141 + 3.33333 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 146852 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 1087.33 chr7 101538406 101539270 + 3.33333 NA intron (NM_133457, intron 4 of 12) intron (NM_133457, intron 4 of 12) 30168 NR_103747 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 998.5 chr6 121055055 121056223 + 3.33333 NA Intergenic L1M8|LINE|L1 278841 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 873.5 chr10 130127872 130128219 + 3.33333 NA Intergenic Intergenic -8330 NM_001199868 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 571.499 chr11 83827802 83828183 + 3.33333 NA intron (NM_001142699, intron 17 of 27) intron (NM_001142699, intron 17 of 27) -145567 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 1058.17 chr3 134492441 134493100 + 3.33333 NA intron (NM_001353122, intron 2 of 12) intron (NM_001353122, intron 2 of 12) 6597 NM_001353124 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 798.167 chr15 57527241 57527942 + 3.33333 NA intron (NM_032866, intron 12 of 18) intron (NM_032866, intron 12 of 18) -64313 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 1056 chr14 51219787 51220253 + 3.33333 NA Intergenic Intergenic -20227 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 1156.33-2 chr12 80412062 80413037 + 3.33333 NA Intergenic Intergenic -31686 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 900.666 chr1 24391209 24392060 + 3.33333 NA exon (NM_001199012, exon 3 of 9) exon (NM_001199012, exon 3 of 9) -21853 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 656.166 chr19 46750064 46750283 + 3.33333 NA intron (NM_001039885, intron 3 of 3) intron (NM_001039885, intron 3 of 3) -3723 NM_013403 29888 Hs.631590 NM_013403 ENSG00000090372 STRN4 PPP2R6C|ZIN|zinedin striatin 4 protein-coding 785.666-2 chr3 146577842 146578333 + 3.33333 NA intron (NM_001321245, intron 7 of 7) intron (NM_001321245, intron 7 of 7) 28129 NM_001321245 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 1635.67 chr5 7745922 7746917 + 3.33333 NA intron (NM_020546, intron 15 of 24) intron (NM_020546, intron 15 of 24) 104714 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 552.833-2 chr6 44630333 44630551 + 3.33333 NA Intergenic Intergenic -78561 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 402.167-12 chr5 132283570 132284004 + 3.33333 NA Intergenic LTR57-int|LTR|ERVL -10607 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 1253.67-2 chr2 106587188 106587996 + 3.33333 NA Intergenic Intergenic 100228 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 526.667-2 chr5 102536291 102536670 + 3.33333 NA Intergenic Intergenic -37479 NM_001289002 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 1069.5-4 chr9 132410691 132411513 + 3.33333 NA intron (NM_001282957, intron 1 of 5) intron (NM_001282957, intron 1 of 5) 891 NM_207417 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 883.333 chr11 128859591 128860275 + 3.33333 NA intron (NM_153766, intron 1 of 2) intron (NM_153766, intron 1 of 2) 7440 NM_153765 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 865.834-2 chr11 113305495 113306119 + 3.33333 NA Intergenic L2b|LINE|L2 -8776 NR_147891 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 933.833 chr1 28785021 28785638 + 3.33333 NA Intergenic Intergenic -26841 NM_000911 4985 Hs.372 NM_000911 ENSG00000116329 OPRD1 DOP|DOR|DOR1|OPRD opioid receptor delta 1 protein-coding 1057-2 chr2 174985600 174986129 + 3.33333 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 19389 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 1036.33 chr10 84264127 84265037 + 3.33333 NA Intergenic Intergenic -15398 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 460.333 chr1 151340704 151341306 + 3.33333 NA 3' UTR (NM_000449, exon 11 of 11) 3' UTR (NM_000449, exon 11 of 11) -6005 NR_131972 101927886 Hs.634042 NR_131972 GBAT2 - glioblastoma multiforme-associated transcript 2 ncRNA 470.833-3 chr15 90157656 90158212 + 3.33333 NA Intergenic (GAAA)n|Simple_repeat|Simple_repeat -26986 NM_020210 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 405.5 chr10 47047408 47047788 + 3.33333 NA Intergenic Intergenic 135876 NM_001042361 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 877.167 chr14 23058169 23058629 + 3.33333 NA promoter-TSS (NM_022478) promoter-TSS (NM_022478) -861 NM_022478 64403 Hs.155912 NM_022478 ENSG00000139880 CDH24 CDH11L cadherin 24 protein-coding 691.667-2 chr8 129901615 129902068 + 3.33333 NA intron (NM_001353243, intron 3 of 13) Charlie4a|DNA|hAT-Charlie 37970 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 1194.17 chr11 115334605 115335239 + 3.33333 NA intron (NR_135108, intron 1 of 1) intron (NR_135108, intron 1 of 1) 1345 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 757.5 chr17 40113022 40113669 + 3.33333 NA Intergenic Intergenic -8626 NM_001012241 339287 Hs.532786 NM_001012241 ENSG00000188895 MSL1 MSL-1 MSL complex subunit 1 protein-coding 999.333 chr5 137778717 137779381 + 3.33333 NA Intergenic L1PB4|LINE|L1 -22144 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 621.167-2 chr16 6684015 6684496 + 3.33333 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -89554 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 512.5 chr11 109697388 109697671 + 3.33333 NA Intergenic L1PA16|LINE|L1 275339 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 957.499 chrX 68018511 68019047 + 3.33333 NA Intergenic L1M1|LINE|L1 414716 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 626.667 chr2 101205497 101206161 + 3.33333 NA Intergenic AluSx|SINE|Alu -47057 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 255.833-13 chr18 29874550 29874780 + 3.33333 NA Intergenic HERVIP10B3-int|LTR|ERV1 -424245 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 513.5-2 chr9 129131423 129132067 + 3.33333 NA intron (NM_178001, intron 6 of 10) intron (NM_178001, intron 6 of 10) 20057 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 456.333 chr2 107808690 107809033 + 3.33333 NA intron (NR_126370, intron 2 of 4) intron (NR_126370, intron 2 of 4) 17908 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 255.333-11 chr2 16405100 16405237 + 3.33333 NA Intergenic Intergenic 260666 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 690.999 chr19 48489606 48489914 + 3.33333 NA intron (NM_001080434, intron 15 of 15) MIR|SINE|MIR 20391 NM_004228 9266 Hs.144011 NM_004228 ENSG00000105443 CYTH2 ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2 cytohesin 2 protein-coding 1163.67 chr6 54717478 54718450 + 3.33333 NA Intergenic Intergenic -128807 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 815.166 chr10 81116929 81117473 + 3.33333 NA Intergenic Intergenic 467404 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 511.001 chr8 42692600 42692926 + 3.33333 NA Intergenic Intergenic -4603 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 458.333-2 chr17 32755195 32755666 + 3.33333 NA intron (NM_015194, intron 11 of 21) intron (NM_015194, intron 11 of 21) 121694 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 632.166 chr6 33768378 33768975 + 3.33333 NA Intergenic Intergenic 18266 NM_001143944 221496 Hs.444845 NM_181336 ENSG00000161904 LEMD2 CTRCT42|LEM2|NET25|dJ482C21.1 LEM domain containing 2 protein-coding 901.832-2 chr22 17171779 17172363 + 3.33333 NA Intergenic CpG -6784 NM_017829 27440 Hs.26890 NM_017829 ENSG00000069998 HDHD5 CECR5 haloacid dehalogenase like hydrolase domain containing 5 protein-coding 891.833-2 chr19 48103033 48103517 + 3.33333 NA intron (NM_001159323, intron 4 of 16) MER91C|DNA|hAT-Tip100 7542 NM_003706 8605 Hs.631562 NM_003706 ENSG00000105499 PLA2G4C CPLA2-gamma phospholipase A2 group IVC protein-coding 337.167-8 chr16 57300693 57300981 + 3.33333 NA Intergenic Intergenic -16165 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 809.334 chr20 59526787 59527220 + 3.33333 NA Intergenic Intergenic -50506 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1215.67 chr1 63537802 63538445 + 3.33333 NA intron (NM_032437, intron 6 of 13) intron (NM_032437, intron 6 of 13) -10857 NR_002771 79469 Hs.659291 NR_002771 DLEU2L BCMSUNL deleted in lymphocytic leukemia 2 like ncRNA 693.167 chr1 22674059 22675126 + 3.33333 NA Intergenic MIR|SINE|MIR 21356 NM_000491 713 Hs.8986 NM_000491 ENSG00000173369 C1QB - complement C1q B chain protein-coding 308.5-20 chr5 59507889 59508054 + 3.33333 NA intron (NM_001349242, intron 1 of 16) L1ME3A|LINE|L1 78527 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 981.999 chr9 83333979 83334685 + 3.33333 NA intron (NM_001244960, intron 6 of 13) intron (NM_001244960, intron 6 of 13) -2371 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 440.167-12 chr8 136314407 136314734 + 3.33333 NA Intergenic Intergenic -216228 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 792.5-2 chr5 108642014 108642645 + 3.33333 NA Intergenic L2a|LINE|L2 85932 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 601.999-2 chr3 14261075 14261381 + 3.33333 NA Intergenic Intergenic 82411 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 593.167-3 chr5 96997197 96997676 + 3.33333 NA intron (NM_005575, intron 7 of 17) intron (NM_005575, intron 7 of 17) 39003 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 707.166 chr3 196528663 196528959 + 3.33333 NA Intergenic CpG -13465 NM_001077657 255798 Hs.631933 NM_001077657 ENSG00000214097 SMCO1 C3orf43 single-pass membrane protein with coiled-coil domains 1 protein-coding 734.5-4 chr12 81450967 81451697 + 3.33333 NA intron (NM_001282536, intron 2 of 29) intron (NM_001282536, intron 2 of 29) 61059 NM_001282536 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 814 chr9 9353152 9353576 + 3.33333 NA intron (NM_002839, intron 9 of 45) MIR3|SINE|MIR -446028 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 541.834-2 chr3 148861238 148861479 + 3.33333 NA Intergenic Intergenic -3938 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 849.334 chr10 80046804 80047464 + 3.33333 NA non-coding (NR_027428, exon 6 of 6) non-coding (NR_027428, exon 6 of 6) -31512 NM_001270371 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 822.166 chr6 50144585 50145610 + 3.33333 NA Intergenic Intergenic -95168 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 308.333-12 chr22 32020167 32020335 + 3.33333 NA intron (NR_149128, intron 4 of 4) intron (NR_149128, intron 4 of 4) -23010 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 633.666 chr12 122860178 122860453 + 3.33333 NA intron (NM_003959, intron 26 of 31) intron (NM_003959, intron 26 of 31) 24858 NM_003959 9026 Hs.524815 NM_003959 ENSG00000130787 HIP1R HIP12|HIP3|ILWEQ huntingtin interacting protein 1 related protein-coding 895.5 chr7 34823445 34824095 + 3.33333 NA intron (NM_207172, intron 4 of 8) intron (NM_207172, intron 4 of 8) 10561 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 906.334 chr1 15791868 15792555 + 3.33333 NA Intergenic Intergenic 15488 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 1074.5 chr15 43285376 43286180 + 3.33333 NA intron (NM_052955, intron 6 of 12) MamRTE1|LINE|RTE-BovB 16477 NM_052955 116179 Hs.164661 NM_052955 ENSG00000159495 TGM7 TGMZ transglutaminase 7 protein-coding 1098.67 chr5 43729531 43730280 + 3.33333 NA Intergenic Intergenic -126675 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 1364.67 chr3 39291793 39293251 + 3.33333 NA Intergenic MIRc|SINE|MIR -10787 NM_001171174 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 804.334 chr12 6763840 6764617 + 3.33333 NA Intergenic Intergenic -2135 NM_001330333 5763 Hs.504613 NM_002824 ENSG00000159335 PTMS ParaT parathymosin protein-coding 1635.33-2 chr5 58886384 58887509 + 3.33333 NA Intergenic Intergenic 112952 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 402.167-5 chr2 173082932 173083174 + 3.33333 NA intron (NM_133646, intron 1 of 11) intron (NM_133646, intron 1 of 11) 7207 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 1067.5 chr7 25391075 25391749 + 3.33333 NA Intergenic Intergenic -162926 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 458.666 chr2 13046641 13046969 + 3.33333 NA Intergenic Intergenic -39792 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 697.165 chrX 47144785 47145221 + 3.33333 NA promoter-TSS (NM_001204467) promoter-TSS (NM_001204467) 207 NM_001135998 54539 Hs.521969 NM_019056 ENSG00000147123 NDUFB11 CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3 NADH:ubiquinone oxidoreductase subunit B11 protein-coding 387-17 chr5 32942585 32942826 + 3.33333 NA Intergenic Intergenic -4738 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 941.833-3 chr7 80059994 80061033 + 3.33333 NA Intergenic Intergenic -74318 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 508 chr2 42086596 42087053 + 3.33333 NA Intergenic Intergenic 38803 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 1551.83 chr14 37232454 37233508 + 3.33333 NA intron (NM_138731, intron 2 of 13) intron (NM_138731, intron 2 of 13) 35044 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 643.334 chr10 52004501 52004916 + 3.33333 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -305113 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 898.5 chr1 156725716 156726731 + 3.33333 NA intron (NM_001370151, intron 2 of 3) intron (NM_001370151, intron 2 of 3) 2216 NM_001303095 81875 Hs.301904 NM_030980 ENSG00000143319 ISG20L2 HSD38 interferon stimulated exonuclease gene 20 like 2 protein-coding 259.833-7 chr14 74251676 74251774 + 3.33333 NA intron (NM_182894, intron 3 of 4) intron (NM_182894, intron 3 of 4) 12276 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 1192.67-4 chr3 4710988 4712182 + 3.33333 NA intron (NM_001168272, intron 37 of 60) intron (NM_001168272, intron 37 of 60) 40005 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 1013 chr10 12214313 12215127 + 3.33333 NA intron (NM_006023, intron 4 of 12) intron (NM_006023, intron 4 of 12) 18532 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 620.167-2 chr7 5529533 5530036 + 3.33333 NA intron (NM_001101, intron 1 of 5) CpG-25504 817 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 532.666-3 chr6 56571201 56571504 + 3.33333 NA intron (NM_001144770, intron 45 of 94) intron (NM_001144770, intron 45 of 94) 71537 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 1086.83-2 chr20 35463456 35464111 + 3.33333 NA intron (NM_007186, intron 5 of 34) intron (NM_007186, intron 5 of 34) 3800 NM_001318219 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1|CRDHL2 centrosomal protein 250 protein-coding 771.667 chr10 97685572 97686040 + 3.33333 NA intron (NM_021732, intron 1 of 2) intron (NM_021732, intron 1 of 2) 1435 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 547-2 chr11 73307174 73307566 + 3.33333 NA promoter-TSS (NM_014786) promoter-TSS (NM_014786) -906 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding 705.001 chr5 39816151 39816556 + 3.33333 NA Intergenic Intergenic -235938 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 938.833 chr12 50247015 50247673 + 3.33333 NA intron (NM_016357, intron 2 of 10) MLT1G1|LTR|ERVL-MaLR -13132 NR_031625 100302220 NR_031625 ENSG00000221604 MIR1293 MIRN1293|hsa-mir-1293|mir-1293 microRNA 1293 ncRNA 1420.33-2 chr5 99060131 99061078 + 3.33333 NA Intergenic Intergenic -130890 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 1063.33 chr3 12841296 12842078 + 3.33333 NA promoter-TSS (NM_000994) promoter-TSS (NM_000994) -105 NM_001007073 6161 Hs.265174 NM_000994 ENSG00000144713 RPL32 L32|PP9932 ribosomal protein L32 protein-coding 1070.33-3 chrX 46408758 46409606 + 3.33333 NA Intergenic Intergenic -38007 NM_017776 55634 Hs.632800 NM_017776 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 255-23 chr3 115788943 115789125 + 3.33333 NA Intergenic Intergenic 116092 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 261.167-11 chr17 77331519 77331670 + 3.33333 NA intron (NM_006640, intron 1 of 10) intron (NM_006640, intron 1 of 10) 12079 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 1323.67 chr12 125182717 125183528 + 3.33333 NA Intergenic Intergenic -3264 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 928.5 chr1 211469736 211470525 + 3.33333 NA Intergenic Intergenic 22787 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 618.5-2 chr11 3849203 3849732 + 3.33333 NA Intergenic Intergenic -6197 NM_001277962 6786 Hs.501735 NM_003156 ENSG00000167323 STIM1 D11S4896E|GOK|IMD10|STRMK|TAM|TAM1 stromal interaction molecule 1 protein-coding 768.333 chr2 42662767 42663909 + 3.33333 NA intron (NM_001330444, intron 8 of 15) intron (NM_001330444, intron 8 of 15) 94706 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 540.666-3 chr20 43072101 43072348 + 3.33333 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 103481 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 1074.67 chr12 10771016 10771688 + 3.33333 NA intron (NR_120463, intron 2 of 6) intron (NR_120463, intron 2 of 6) 21118 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 699.667-2 chr6 83535811 83536646 + 3.33333 NA Intergenic Intergenic 23694 NM_153362 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 778.334-2 chr6 72084934 72085380 + 3.33333 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) -127736 NM_001350419 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 469.5-2 chr10 12068663 12068953 + 3.33333 NA promoter-TSS (NM_018706) promoter-TSS (NM_018706) -146 NM_018706 55526 Hs.104980 NM_018706 ENSG00000181192 DHTKD1 AMOXAD|CMT2Q dehydrogenase E1 and transketolase domain containing 1 protein-coding 2056.66 chr5 75336003 75337286 + 3.33333 NA promoter-TSS (NM_000859) promoter-TSS (NM_000859) -524 NM_001364187 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 568.499 chr17 61966539 61966842 + 3.33333 NA intron (NM_005121, intron 18 of 29) intron (NM_005121, intron 18 of 29) -38708 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 733.333-2 chr8 142739539 142739987 + 3.33333 NA Intergenic CpG 2643 NM_020427 57152 Hs.103505 NM_020427 ENSG00000126233 SLURP1 ANUP|ARS|ArsB|LY6-MT|LY6LS|MDM secreted LY6/PLAUR domain containing 1 protein-coding 1286 chr15 83559225 83559969 + 3.33333 NA intron (NM_001324185, intron 3 of 9) intron (NM_001324185, intron 3 of 9) 68983 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 840.001 chr20 53943679 53944469 + 3.33333 NA 3' UTR (NM_001366296, exon 11 of 11) 3' UTR (NM_001366296, exon 11 of 11) -68365 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 366.5-4 chr18 1499372 1499783 + 3.33333 NA Intergenic Intergenic -139948 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 634-2 chr18 2387500 2387913 + 3.33333 NA Intergenic L1ME1|LINE|L1 183799 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 723.833 chr15 42471706 42471992 + 3.33333 NA intron (NM_001366844, intron 2 of 19) intron (NM_001366844, intron 2 of 19) -14282 NM_022473 64397 Hs.511143 NM_022473 ENSG00000103994 ZNF106 SH3BP3|ZFP106|ZNF474 zinc finger protein 106 protein-coding 1188.33 chr2 102472417 102473689 + 3.33333 NA promoter-TSS (NM_001011552) promoter-TSS (NM_001011552) -173 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 543.166 chr20 58388798 58389167 + 3.33333 NA promoter-TSS (NM_004738) promoter-TSS (NM_004738) -137 NM_004738 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 651.667 chr1 36224207 36225006 + 3.33333 NA intron (NM_001321473, intron 1 of 11) intron (NM_001321473, intron 1 of 11) 163 NM_001321471 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 BCLAF2|TRAP150 thyroid hormone receptor associated protein 3 protein-coding 1407.67-2 chr19 45584345 45585357 + 3.33333 NA promoter-TSS (NM_001017989) promoter-TSS (NM_001017989) -49 NM_025136 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 outer mitochondrial membrane lipid metabolism regulator OPA3 protein-coding 765.166-3 chr20 46021699 46022006 + 3.33333 NA exon (NM_001134771, exon 1 of 26) exon (NM_001134771, exon 1 of 26) 166 NM_001134771 57468 Hs.21413 NM_020708 ENSG00000124140 SLC12A5 EIEE34|EIG14|KCC2|hKCC2 solute carrier family 12 member 5 protein-coding 1080 chr1 177945914 177946390 + 3.33333 NA non-coding (NR_151492, exon 23 of 23) non-coding (NR_151492, exon 23 of 23) 23770 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 892.666-2 chr2 165874489 165875220 + 3.33333 NA intron (NM_024753, intron 28 of 28) intron (NM_024753, intron 28 of 28) -2913 NR_045375 100506124 Hs.709870 NR_045375 LOC100506124 - uncharacterized LOC100506124 ncRNA 1220.33 chr2 47272175 47272979 + 3.33333 NA intron (NR_110207, intron 1 of 2) CpG -62738 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 205.833-18 chr2 231852394 231852518 + 3.33333 NA Intergenic Intergenic 39842 NR_031717 100302126 NR_031717 ENSG00000222246 MIR1471 MIRN1471|hsa-mir-1471 microRNA 1471 ncRNA 608.667-3 chr3 56251493 56251815 + 3.33333 NA intron (NR_132749, intron 3 of 17) intron (NR_132749, intron 3 of 17) 216813 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 760.334 chr20 6828744 6829105 + 3.33333 NA Intergenic Intergenic 61238 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 403.166 chr1 218738866 218739046 + 3.33333 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 179555 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 559-3 chr6 55693884 55694137 + 3.33333 NA Intergenic Intergenic -114796 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 344.167-6 chr18 54558930 54559340 + 3.33333 NA Intergenic Intergenic -28624 NM_001307955 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 1318.33 chr2 120675294 120676577 + 3.33333 NA Intergenic Intergenic -59933 NM_001371271 664 chr20 61229082 61229619 + 3.33333 NA Intergenic Intergenic -22911 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 1003.5 chr12 3135362 3135846 + 3.33333 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 58225 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 853.001 chr17 63612036 63612909 + 3.33333 NA Intergenic Intergenic -9945 NM_001330431 4215 Hs.29282 NM_002401 ENSG00000198909 MAP3K3 MAPKKK3|MEKK3 mitogen-activated protein kinase kinase kinase 3 protein-coding 2063.33 chr8 86124715 86125890 + 3.33333 NA intron (NM_152565, intron 2 of 7) intron (NM_152565, intron 2 of 7) 26392 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 739.166 chr20 39874084 39874678 + 3.33333 NA Intergenic Intergenic -130080 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 1012.33 chr4 74207409 74208253 + 3.33333 NA intron (NM_001144978, intron 5 of 7) intron (NM_001144978, intron 5 of 7) 49713 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 1060.67 chr11 94519273 94520075 + 3.33333 NA intron (NM_001190462, intron 2 of 3) intron (NM_001190462, intron 2 of 3) 7213 NM_001190462 643037 NM_001190462 ENSG00000257057 C11orf97 LINC01171 chromosome 11 open reading frame 97 protein-coding 618 chr1 5514467 5514689 + 3.33333 NA Intergenic L2a|LINE|L2 348163 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 857.499 chr8 46956848 46957581 + 3.33333 NA Intergenic Intergenic 116328 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 976.333 chr6 62283667 62284471 + 3.33333 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 2156 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 351.166 chr14 100385136 100385341 + 3.33333 NA intron (NM_001350948, intron 2 of 6) L2c|LINE|L2 8753 NM_001350947 79446 Hs.497599 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 1374.17 chr3 9302516 9303286 + 3.33333 NA Intergenic Intergenic 53145 NR_146969 101927440 NR_146969 ENSG00000235830 SRGAP3-AS4 - SRGAP3 antisense RNA 4 ncRNA 356.667-11 chr7 44857039 44857220 + 3.33333 NA Intergenic LTR50|LTR|ERVL -9003 NM_201517 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 2086.5 chr8 119262859 119264354 + 3.33333 NA Intergenic Intergenic -16749 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 275.5-8 chr11 34366025 34366167 + 3.33333 NA Intergenic Intergenic -8086 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 774.333-4 chr8 112465247 112465642 + 3.33333 NA intron (NM_052900, intron 31 of 68) LTR52-int|LTR|ERVL -178049 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 594.666 chr5 18762778 18763082 + 3.33333 NA Intergenic Intergenic 955656 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 990.499 chr3 40584275 40584748 + 3.33333 NA Intergenic MIRb|SINE|MIR 59551 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 607.5-3 chrX 154841015 154841517 + 3.33333 NA intron (NM_019863, intron 4 of 4) intron (NM_019863, intron 4 of 4) -6604 NM_001162936 100132963 Hs.220762 NM_001162936 ENSG00000203870 SMIM9 CXorf68 small integral membrane protein 9 protein-coding 828.334 chr10 28394125 28394563 + 3.33333 NA Intergenic Intergenic -91280 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 564.166 chr1 69991339 69991568 + 3.33333 NA intron (NM_001370785, intron 10 of 26) L4_C_Mam|LINE|RTE-X 72131 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 1230.33 chr13 26930205 26930879 + 3.33333 NA Intergenic Intergenic -169756 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 1177 chr2 107936449 107937313 + 3.33333 NA Intergenic Intergenic -49643 NM_001305007 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 1247.33 chr4 78644173 78645170 + 3.33333 NA Intergenic Intergenic -1323 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 289.5 chr1 179079084 179079356 + 3.33333 NA Intergenic MER5A1|DNA|hAT-Charlie -2850 NM_022371 64222 Hs.584957 NM_022371 ENSG00000186283 TOR3A ADIR|ADIR2 torsin family 3 member A protein-coding 632.333-4 chr5 85077543 85077744 + 3.33333 NA Intergenic Intergenic -692763 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 858.667 chr19 12736906 12737535 + 3.33333 NA promoter-TSS (NM_004317) promoter-TSS (NM_004317) -277 NM_004317 439 Hs.465985 NM_004317 ENSG00000198356 GET3 ARSA-I|ARSA1|ASNA-I|ASNA1|TRC40 guided entry of tail-anchored proteins factor 3, ATPase protein-coding 816 chr10 84537384 84537846 + 3.33333 NA Intergenic Intergenic 112446 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 1635-2 chr12 11580722 11581797 + 3.33333 NA Intergenic L1PB2|LINE|L1 33229 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 433.5-8 chr8 101381965 101382143 + 3.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 13161 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 751 chr1 163069337 163069677 + 3.33333 NA exon (NM_005613, exon 1 of 5) exon (NM_005613, exon 1 of 5) 253 NM_001113381 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 1677 chr14 69726641 69727604 + 3.33333 NA Intergenic CpG -40020 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 540.666-4 chr4 165131410 165131667 + 3.33333 NA Intergenic Intergenic -18678 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 313.334-7 chr9 91433356 91433508 + 3.33333 NA Intergenic Intergenic -8806 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 748.999 chr10 125982447 125982825 + 3.33333 NA intron (NM_001363549, intron 2 of 10) intron (NM_001363549, intron 2 of 10) -9363 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 357.166-3 chr3 88420319 88420446 + 3.33333 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 81926 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 774.333-5 chr9 37904089 37904783 + 3.33333 NA promoter-TSS (NM_033412) promoter-TSS (NM_033412) -83 NR_024872 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 888.667 chr3 124928409 124928980 + 3.33333 NA intron (NM_033049, intron 1 of 11) intron (NM_033049, intron 1 of 11) 6057 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 610.5-2 chr17 10327333 10327966 + 3.33333 NA intron (NM_003802, intron 22 of 40) intron (NM_003802, intron 22 of 40) 45357 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 946.5 chr16 19886210 19886881 + 3.33333 NA promoter-TSS (NM_001304771) promoter-TSS (NM_001304771) -911 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 895.666 chr1 182396831 182397295 + 3.33333 NA Intergenic Intergenic 3604 NM_172000 127670 Hs.156977 NM_172000 ENSG00000203730 TEDDM1 EDDM9|Epdd1|HE9|HEL-S-45e|TMEM45C transmembrane epididymal protein 1 protein-coding 888 chr10 122300735 122301200 + 3.33333 NA intron (NM_001318189, intron 9 of 15) intron (NM_001318189, intron 9 of 15) 29671 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 710.667-3 chr12 29519212 29519790 + 3.33333 NA intron (NM_001367875, intron 14 of 19) intron (NM_001367875, intron 14 of 19) -19808 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 664.166-3 chr7 73725731 73726158 + 3.33333 NA Intergenic Intergenic -6275 NM_001165903 6804 Hs.647024 NM_004603 ENSG00000106089 STX1A HPC-1|P35-1|STX1|SYN1A syntaxin 1A protein-coding 295.333-5 chr10 30215982 30216148 + 3.33333 NA intron (NR_120653, intron 1 of 2) intron (NR_120653, intron 1 of 2) 4213 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 832.833-2 chr20 23668310 23668808 + 3.33333 NA Intergenic Intergenic 20466 NM_001899 1472 Hs.654549 NM_001899 ENSG00000101441 CST4 - cystatin S protein-coding 1148.67 chr2 94956696 94957216 + 3.33333 NA Intergenic Intergenic -9614 NR_037597 442028 Hs.611545 NR_037597 ENSG00000259848 LOC442028 - uncharacterized LOC442028 ncRNA 799.5-2 chr9 33466602 33467165 + 3.33333 NA TTS (NR_106910) TTS (NR_106910) 1052 NR_106910 102465512 NR_106910 ENSG00000275651 MIR6851 hsa-mir-6851 microRNA 6851 ncRNA 569.667-2 chr5 36502717 36503102 + 3.33333 NA Intergenic Intergenic -103446 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 603.333 chr1 76668476 76668894 + 3.33333 NA Intergenic Intergenic 110582 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 618.167-4 chrX 153947262 153947636 + 3.33333 NA TTS (NM_005334) TTS (NM_005334) -2806 NM_002910 5973 Hs.158331 NM_002910 ENSG00000102032 RENBP RBP|RNBP renin binding protein protein-coding 1548.67 chr1 153986478 153987209 + 3.33333 NA promoter-TSS (NM_002870) promoter-TSS (NM_002870) -504 NR_073553 5872 Hs.151536 NM_002870 ENSG00000143545 RAB13 GIG4 RAB13, member RAS oncogene family protein-coding 463.666 chr19 3572535 3572886 + 3.33333 NA promoter-TSS (NM_006339) promoter-TSS (NM_006339) -234 NM_006339 10362 Hs.406534 NM_006339 ENSG00000064961 HMG20B BRAF25|BRAF35|HMGX2|HMGXB2|PP7706|SMARCE1r|SOXL|pp8857 high mobility group 20B protein-coding 339.834-4 chr5 39842715 39842962 + 3.33333 NA Intergenic Intergenic -209453 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 1157.5 chr16 46908570 46909309 + 3.33333 NA intron (NM_001142466, intron 5 of 11) intron (NM_001142466, intron 5 of 11) -22465 NR_145840 109623466 NR_145840 SNORD148 - small nucleolar RNA, C/D box 148 snoRNA 1866.33 chr9 124771388 124772779 + 3.33333 NA promoter-TSS (NM_033334) promoter-TSS (NM_033334) -772 NM_001278546 2649 Hs.20131 NM_001489 ENSG00000148200 NR6A1 CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR nuclear receptor subfamily 6 group A member 1 protein-coding 544.334 chr5 13250451 13250893 + 3.33333 NA Intergenic Intergenic -217786 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 507.667-3 chr7 131040606 131041139 + 3.16667 NA intron (NR_109850, intron 3 of 5) intron (NR_109850, intron 3 of 5) 66158 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 657.667 chr12 16237477 16237698 + 3.16667 NA intron (NM_001170798, intron 5 of 8) intron (NM_001170798, intron 5 of 8) 40098 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 706.334 chr10 54402362 54402813 + 3.16667 NA intron (NM_001142773, intron 2 of 31) Tigger1|DNA|TcMar-Tigger -83643 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 668.168 chr6 145633820 145634650 + 3.16667 NA TTS (NM_001368130) TTS (NM_001368130) 52642 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 533.667-4 chr8 17333918 17334409 + 3.16667 NA TTS (NM_001363172) TTS (NM_001363172) 79188 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 760.833-2 chr5 63963059 63963656 + 3.16667 NA Intergenic Intergenic -1065 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 789.501 chr14 23727490 23728104 + 3.16667 NA Intergenic MIRc|SINE|MIR 91433 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 910.5-2 chr4 25439864 25440449 + 3.16667 NA Intergenic Intergenic 62893 NM_001286756 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 992.667 chr17 73191120 73192117 + 3.16667 NA Intergenic Intergenic -1437 NM_018714 9382 Hs.103555 NM_018714 ENSG00000166685 COG1 CDG2G|LDLB component of oligomeric golgi complex 1 protein-coding 596.5-3 chr8 68577329 68577886 + 3.16667 NA intron (NR_146186, intron 7 of 12) intron (NR_146186, intron 7 of 12) -246116 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 644.667-3 chr16 51762272 51762569 + 3.16667 NA promoter-TSS (NR_110916) promoter-TSS (NR_110916) -99 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 830.501 chr11 119323500 119324028 + 3.16667 NA Intergenic Intergenic -6634 NM_006500 4162 Hs.599039 NM_006500 ENSG00000076706 MCAM CD146|HEMCAM|METCAM|MUC18|MelCAM melanoma cell adhesion molecule protein-coding 512.667-4 chr8 29722920 29723244 + 3.16667 NA intron (NR_026765, intron 3 of 3) intron (NR_026765, intron 3 of 3) 25027 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 418.334-3 chr2 129263173 129263319 + 3.16667 NA intron (NR_122042, intron 1 of 3) intron (NR_122042, intron 1 of 3) 10645 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 976.167-2 chr4 166091713 166092450 + 3.16667 NA intron (NM_012464, intron 19 of 20) intron (NM_012464, intron 19 of 20) 218844 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 459.834-3 chr2 51072645 51072813 + 3.16667 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 40128 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 560.834-2 chr4 40840943 40841493 + 3.16667 NA intron (NM_001166051, intron 1 of 6) intron (NM_001166051, intron 1 of 6) 15937 NM_001166052 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 765-2 chr7 82726700 82727406 + 3.16667 NA Intergenic Intergenic -283097 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 985.833 chr10 25016218 25017049 + 3.16667 NA promoter-TSS (NR_072992) promoter-TSS (NR_072992) 21 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 1354.67-2 chr8 104512081 104512948 + 3.16667 NA intron (NM_001135703, intron 1 of 5) intron (NM_001135703, intron 1 of 5) -28049 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 1139.67 chr1 206544706 206545203 + 3.16667 NA intron (NM_182664, intron 2 of 4) intron (NM_182664, intron 2 of 4) -12210 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 630.833 chr1 151909230 151909822 + 3.16667 NA promoter-TSS (NM_053055) promoter-TSS (NM_053055) -15 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 541.5 chr11 37657590 37657880 + 3.16667 NA Intergenic Intergenic -280866 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 650.166 chr10 67479021 67479432 + 3.16667 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -75816 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 1093-2 chr9 100505505 100506396 + 3.16667 NA intron (NM_001198812, intron 2 of 9) intron (NM_001198812, intron 2 of 9) 32801 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 731.5-2 chr3 185733790 185734351 + 3.16667 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 20818 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 1348.17 chr7 82481242 82482294 + 3.16667 NA Intergenic Intergenic -37812 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 326.167 chr12 26877764 26878210 + 3.16667 NA Intergenic AluSx3|SINE|Alu -44793 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 976.666-3 chr5 26024512 26025349 + 3.16667 NA Intergenic AluJb|SINE|Alu 833977 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 437.834 chr15 66853346 66853675 + 3.16667 NA Intergenic Intergenic 103005 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 816.833 chr18 3151186 3151839 + 3.16667 NA intron (NM_019856, intron 12 of 36) intron (NM_019856, intron 12 of 36) 68456 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 517.167 chr1 188557495 188557693 + 3.16667 NA Intergenic Intergenic 1113966 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 623.501 chr21 14738104 14738445 + 3.16667 NA Intergenic Intergenic -95167 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 1300.17 chr10 17742827 17743423 + 3.16667 NA Intergenic AluSp|SINE|Alu -9076 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 837.667 chr3 39990570 39991027 + 3.16667 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -109213 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 989.667-2 chr3 194471967 194472502 + 3.16667 NA intron (NM_001367549, intron 2 of 33) intron (NM_001367549, intron 2 of 33) -3995 NM_024524 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 502.166 chr1 154863579 154863976 + 3.16667 NA intron (NM_001204087, intron 1 of 8) intron (NM_001204087, intron 1 of 8) -3901 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 651.834 chr16 740973 741554 + 3.16667 NA promoter-TSS (NM_022493) promoter-TSS (NM_022493) -266 NM_022493 64428 Hs.513247 NM_022493 ENSG00000103245 CIAO3 HPRN|IOP1|LET1L|NAR1|NARFL|PRN cytosolic iron-sulfur assembly component 3 protein-coding 542.5-4 chr4 108650323 108650562 + 3.16667 NA promoter-TSS (NM_001267818) promoter-TSS (NM_001267818) -143 NM_001267817 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 534.666-2 chr20 32652814 32653336 + 3.16667 NA intron (NM_182584, intron 1 of 5) intron (NM_182584, intron 1 of 5) 20866 NM_182584 284805 Hs.353262 NM_182584 ENSG00000198547 C20orf203 - chromosome 20 open reading frame 203 protein-coding 1158.67 chr1 172443701 172444653 + 3.16667 NA promoter-TSS (NM_153747) promoter-TSS (NM_153747) -108 NM_002642 5279 Hs.188456 NM_002642 ENSG00000135845 PIGC GPI2|GPIBD16|MRT62 phosphatidylinositol glycan anchor biosynthesis class C protein-coding 844.999 chr1 203339825 203340647 + 3.16667 NA TTS (NM_002023) TTS (NM_002023) 10886 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 275.333-17 chr7 100407700 100407823 + 3.16667 NA intron (NM_001258008, intron 10 of 15) intron (NM_001258008, intron 10 of 15) 20942 NM_001258008 55063 Hs.105191 NM_017984 ENSG00000078487 ZCWPW1 ZCW1 zinc finger CW-type and PWWP domain containing 1 protein-coding 748.834 chr2 101832067 101832610 + 3.16667 NA intron (NM_145686, intron 7 of 30) intron (NM_145686, intron 7 of 30) 134631 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 755.001-2 chr6 85482710 85483328 + 3.16667 NA intron (NM_002526, intron 3 of 8) intron (NM_002526, intron 3 of 8) 32936 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 600.001 chr19 41951851 41952086 + 3.16667 NA Intergenic Intergenic 7353 NM_006423 10567 Hs.11417 NM_006423 ENSG00000105404 RABAC1 PRA1|PRAF1|YIP3 Rab acceptor 1 protein-coding 465 chr12 6537837 6538458 + 3.16667 NA TTS (NR_036467) TTS (NR_036467) 2883 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 1210.33 chr17 48671244 48672398 + 3.16667 NA Intergenic Intergenic -39262 NR_029582 406972 NR_029582 ENSG00000210741 MIR196A1 MIRN196-1|MIRN196A1|mir-196a-1 microRNA 196a-1 ncRNA 890.499 chr7 83907472 83907976 + 3.16667 NA Intergenic Intergenic -258585 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 282.667-26 chr7 40232609 40232745 + 3.16667 NA intron (NM_024728, intron 6 of 14) intron (NM_024728, intron 6 of 14) 97701 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 650.667-2 chr14 32252258 32252547 + 3.16667 NA Intergenic Intergenic -49133 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 608.834-2 chr1 181142324 181142876 + 3.16667 NA Intergenic Intergenic -31884 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 367.334 chr13 53778711 53779151 + 3.16667 NA Intergenic Intergenic -36488 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 800.501 chr10 5629803 5630217 + 3.16667 NA Intergenic MER91C|DNA|hAT-Tip100 -33892 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LINC02657 - long intergenic non-protein coding RNA 2657 ncRNA 1351.17 chr18 45722830 45723335 + 3.16667 NA Intergenic Intergenic -1099 NM_001308279 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 807.667 chr11 81496988 81497677 + 3.16667 NA Intergenic Intergenic 393504 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 469.667-5 chr2 218085848 218086254 + 3.16667 NA intron (NR_034176, intron 12 of 13) HAL1|LINE|L1 17036 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 703.833-2 chr2 69911968 69912424 + 3.16667 NA Intergenic Intergenic -2845 NM_001202514 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 962.333-2 chr6 35737487 35738253 + 3.16667 NA promoter-TSS (NR_027117) promoter-TSS (NR_027117) 838 NM_145028 221481 Hs.533066 NM_145028 ENSG00000157343 ARMC12 C6orf81 armadillo repeat containing 12 protein-coding 307.999-2 chr12 24614401 24614600 + 3.16667 NA Intergenic L1M3e|LINE|L1 -30332 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 962.167 chr6 113935922 113936564 + 3.16667 NA TTS (NR_073443) TTS (NR_073443) 31856 NR_027060 285759 Hs.376634 NM_173673 ENSG00000175967 FLJ34503 - uncharacterized FLJ34503 ncRNA 974.666 chr12 54379704 54380315 + 3.16667 NA intron (NM_015481, intron 1 of 6) intron (NM_015481, intron 1 of 6) 4724 NM_015481 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 556.667 chr10 53010666 53010965 + 3.16667 NA Intergenic Intergenic -239115 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 729.834 chr2 205925699 205926304 + 3.16667 NA Intergenic CpG 160173 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 1507.33 chr2 177147112 177148284 + 3.16667 NA Intergenic Intergenic 64713 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 351-10 chr4 107895900 107896363 + 3.16667 NA intron (NM_152621, intron 2 of 5) intron (NM_152621, intron 2 of 5) 2867 NM_001136257 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 656.167-3 chr2 182077828 182078097 + 3.16667 NA intron (NM_001261425, intron 4 of 5) AluSx3|SINE|Alu 92109 NM_001261424 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 548.5-3 chr3 124559788 124560482 + 3.16667 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -24523 NM_001322995 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 494.167-3 chr12 63843717 63844244 + 3.16667 NA promoter-TSS (NM_020762) promoter-TSS (NM_020762) -720 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 891.166 chr1 18100454 18101099 + 3.16667 NA Intergenic Intergenic -7022 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 438-3 chr17 67717513 67717933 + 3.16667 NA promoter-TSS (NM_015462) promoter-TSS (NM_015462) -110 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 488 chr11 67606572 67607161 + 3.16667 NA promoter-TSS (NM_007103) promoter-TSS (NM_007103) -70 NM_001166102 4723 Hs.7744 NM_007103 ENSG00000167792 NDUFV1 CI-51K|CI51KD|MC1DN4|UQOR1 NADH:ubiquinone oxidoreductase core subunit V1 protein-coding 755 chr1 43763307 43763843 + 3.16667 NA intron (NM_001270465, intron 2 of 7) intron (NM_001270465, intron 2 of 7) -36232 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 846.668 chr17 42517361 42517891 + 3.16667 NA intron (NM_005177, intron 20 of 20) intron (NM_005177, intron 20 of 20) 3438 NR_049808 100847046 NR_049808 ENSG00000283929 MIR5010 mir-5010 microRNA 5010 ncRNA 1326.33-3 chr17 55295651 55296715 + 3.16667 NA intron (NM_001330375, intron 2 of 3) intron (NM_001330375, intron 2 of 3) 29961 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 1279.17 chr10 115355114 115355664 + 3.16667 NA intron (NM_207303, intron 19 of 28) L1MA4|LINE|L1 262024 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 1498.5 chr5 36695992 36697047 + 3.16667 NA Intergenic Intergenic 89913 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 1127.67 chr11 63837141 63837779 + 3.16667 NA Intergenic Intergenic -1468 NM_001039469 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 1507.84 chr12 6868894 6870003 + 3.16667 NA intron (NM_000365, intron 4 of 6) intron (NM_000365, intron 4 of 6) 1334 NM_001258026 7167 Hs.524219 NM_000365 ENSG00000111669 TPI1 HEL-S-49|TIM|TPI|TPID triosephosphate isomerase 1 protein-coding 483.334 chr14 50860498 50860898 + 3.16667 NA Intergenic Intergenic -11355 NM_001206673 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 921.167 chr6 142112369 142113335 + 3.16667 NA intron (NM_001324308, intron 1 of 2) (AATT)n|Simple_repeat|Simple_repeat -20307 NM_001358410 100126572 NM_001358410 ENSG00000203733 GJE1 CX23 gap junction protein epsilon 1 protein-coding 445.5-3 chr2 22358453 22358758 + 3.16667 NA Intergenic Intergenic -177874 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 619.5-5 chr6 157034340 157034846 + 3.16667 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -1834 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 369.167 chr11 83292828 83293182 + 3.16667 NA Intergenic Intergenic -6598 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 815.833 chr10 125934014 125934714 + 3.16667 NA intron (NM_001363549, intron 1 of 10) L1ME3D|LINE|L1 37558 NM_001363549 92565 Hs.352591 NM_145235 ENSG00000203780 FANK1 HSD13 fibronectin type III and ankyrin repeat domains 1 protein-coding 341.5 chr1 1375253 1375393 + 3.16667 NA promoter-TSS (NM_017900) promoter-TSS (NM_017900) -116 NM_001127230 54998 Hs.632515 NM_017900 ENSG00000175756 AURKAIP1 AIP|AKIP|MRP-S38 aurora kinase A interacting protein 1 protein-coding 472.001-2 chr22 43273877 43274158 + 3.16667 NA intron (NM_173050, intron 4 of 21) intron (NM_173050, intron 4 of 21) -1925 NR_134582 101927447 Hs.621227 NR_134582 ENSG00000203527 LOC101927447 - uncharacterized LOC101927447 ncRNA 2335 chr11 14907163 14909440 + 3.16667 NA Intergenic L3b|LINE|CR1 -16096 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 986.501 chr1 93813958 93814602 + 3.16667 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -32552 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 1034.67 chr17 64497007 64497773 + 3.16667 NA promoter-TSS (NM_007215) promoter-TSS (NM_007215) -336 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 287-10 chr15 26973912 26974334 + 3.16667 NA intron (NM_001270873, intron 1 of 5) intron (NM_001270873, intron 1 of 5) 2942 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 720.499 chr20 45095750 45096369 + 3.16667 NA intron (NM_001322799, intron 3 of 3) MER20|DNA|hAT-Charlie 5068 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 637.834-4 chr20 11274236 11274519 + 3.16667 NA promoter-TSS (NR_038972) promoter-TSS (NR_038972) -994 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 836.334-2 chr22 19630062 19630689 + 3.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -63536 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 999 chr11 20127964 20128671 + 3.16667 NA Intergenic Intergenic 32158 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 461.001-2 chr12 108838417 108838696 + 3.16667 NA intron (NM_018984, intron 2 of 14) intron (NM_018984, intron 2 of 14) -1550 NR_030350 693204 NR_030350 ENSG00000207622 MIR619 MIRN619|hsa-mir-619 microRNA 619 ncRNA 580.167-5 chr20 44460445 44461111 + 3.16667 NA TTS (NR_132342) TTS (NR_132342) 4566 NR_132342 140834 Hs.357589 NM_001287807 ENSG00000168746 LINC01620 C20orf62|dJ1013A22.3 long intergenic non-protein coding RNA 1620 ncRNA 837.666 chr7 37853639 37854102 + 3.16667 NA intron (NM_016616, intron 5 of 17) intron (NM_016616, intron 5 of 17) 5273 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 1595.17-3 chr9 98205440 98206506 + 3.16667 NA intron (NR_051978, intron 8 of 11) intron (NR_051978, intron 8 of 11) 7578 NM_001267572 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 805 chr9 37465211 37465910 + 3.16667 NA promoter-TSS (NM_014872) promoter-TSS (NM_014872) -110 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 1006.83 chr1 42577874 42578630 + 3.16667 NA intron (NM_001080850, intron 8 of 16) L1ME3|LINE|L1 45232 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 975.167 chr5 130108895 130109374 + 3.16667 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 204669 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 1029.5 chr2 11132519 11133007 + 3.16667 NA promoter-TSS (NR_040080) promoter-TSS (NR_040080) -365 NM_001371321 1395.5 chr3 184227071 184227851 + 3.16667 NA Intergenic Intergenic -2892 NM_138345 90113 Hs.584997 NM_138345 ENSG00000145198 VWA5B2 - von Willebrand factor A domain containing 5B2 protein-coding 1154.17 chr11 19259170 19260221 + 3.16667 NA Intergenic (CATC)n|Simple_repeat|Simple_repeat -18040 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 472.833-2 chr15 89416197 89416520 + 3.16667 NA intron (NR_160724, intron 2 of 2) intron (NR_160724, intron 2 of 2) 16187 NR_160724 105371031 NR_160724 LOC105371031 - uncharacterized LOC105371031 ncRNA 561.667-3 chr17 41688610 41688883 + 3.16667 NA promoter-TSS (NM_005801) promoter-TSS (NM_005801) -139 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 922.5 chr2 230008124 230008566 + 3.16667 NA intron (NM_174899, intron 3 of 3) intron (NM_174899, intron 3 of 3) 60579 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 1071-2 chr5 112146730 112147581 + 3.16667 NA intron (NM_001347887, intron 22 of 23) intron (NM_001347887, intron 22 of 23) -13371 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 1145.33-3 chr3 32374815 32375478 + 3.16667 NA Intergenic AluJb|SINE|Alu -16707 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 411.666-4 chr3 141464863 141465111 + 3.16667 NA Intergenic Intergenic -22040 NM_001303245 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 839.667 chr15 59919015 59919561 + 3.16667 NA Intergenic MIR3|SINE|MIR -85023 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 595.499 chr2 15636086 15636445 + 3.16667 NA Intergenic Intergenic 44397 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 640.667 chr6 97436962 97437413 + 3.16667 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 131601 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 301-12 chr2 121921246 121921407 + 3.16667 NA Intergenic AluSc|SINE|Alu 165675 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 429.667-3 chr4 57152364 57152608 + 3.16667 NA intron (NR_034081, intron 1 of 4) L1ME4b|LINE|L1 -42101 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 866.5-2 chr4 144174014 144174512 + 3.16667 NA Intergenic L1MA5|LINE|L1 -33545 NM_001308190 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 914.334 chr17 68771675 68772541 + 3.16667 NA Intergenic Intergenic 143954 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 428.667-7 chr3 45499465 45499927 + 3.16667 NA intron (NM_001368263, intron 13 of 20) intron (NM_001368263, intron 13 of 20) 9849 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 799.834 chr9 126558238 126558860 + 3.16667 NA Intergenic Intergenic -55894 NM_001174146 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 793.833 chr15 42137815 42138213 + 3.16667 NA Intergenic MER47C|DNA|TcMar-Tigger 18622 NR_033151 255189 Hs.231873 NM_213600 ENSG00000168907 PLA2G4F PLA2G4FZ phospholipase A2 group IVF protein-coding 1652.83 chr12 113461683 113462814 + 3.16667 NA 3' UTR (NM_022363, exon 5 of 5) 3' UTR (NM_022363, exon 5 of 5) 9623 NM_022363 64211 Hs.302029 NM_022363 ENSG00000089116 LHX5 - LIM homeobox 5 protein-coding 768.667-3 chr3 70550526 70550992 + 3.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -238121 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 372.667-10 chr6 36914188 36914449 + 3.16667 NA exon (NM_001286637, exon 5 of 9) exon (NM_001286637, exon 5 of 9) 28366 NM_152734 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 670.501 chr20 57089392 57089824 + 3.16667 NA Intergenic Intergenic -124088 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 448.5-2 chr10 79562061 79562264 + 3.16667 NA Intergenic L1MC4|LINE|L1 -1755 NM_001320813 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 857 chr1 165593184 165593881 + 3.16667 NA Intergenic MIRb|SINE|MIR -11377 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LRRC52-AS1 - LRRC52 antisense RNA 1 ncRNA 471.667 chr2 100260824 100261162 + 3.16667 NA Intergenic Intergenic 52739 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 1130.33-4 chr4 73433806 73434851 + 3.16667 NA Intergenic L2a|LINE|L2 -1893 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 535.167-5 chr4 183407247 183407717 + 3.16667 NA Intergenic Intergenic -37154 NM_001317343 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 440-2 chr10 99845716 99846203 + 3.16667 NA intron (NM_000392, intron 29 of 31) intron (NM_000392, intron 29 of 31) 63319 NM_000392 1244 Hs.368243 NM_000392 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP binding cassette subfamily C member 2 protein-coding 851.167-2 chr9 7052365 7053077 + 3.16667 NA intron (NM_001353997, intron 17 of 22) intron (NM_001353997, intron 17 of 22) 295371 NM_001304339 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 1074.5-2 chr9 20940912 20941616 + 3.16667 NA intron (NM_017794, intron 30 of 45) intron (NM_017794, intron 30 of 45) 90376 NM_001321883 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 684.333 chr5 98905835 98906397 + 3.16667 NA intron (NM_001364113, intron 2 of 36) intron (NM_001364113, intron 2 of 36) 20418 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 866.168 chr5 39713920 39714786 + 3.16667 NA Intergenic Intergenic 193922 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 1208.5 chr1 240026726 240027538 + 3.16667 NA Intergenic Intergenic 19608 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 680.834 chr9 32968636 32969082 + 3.16667 NA Intergenic Intergenic 32717 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 368.667-4 chr11 118145427 118145677 + 3.16667 NA promoter-TSS (NM_001142349) promoter-TSS (NM_001142349) -119 NM_001142349 6330 Hs.65239 NM_174934 ENSG00000177098 SCN4B ATFB17|LQT10|Navbeta4 sodium voltage-gated channel beta subunit 4 protein-coding 692.5 chr1 112880719 112881321 + 3.16667 NA Intergenic Intergenic -1030 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 848.5-2 chr11 68209059 68210013 + 3.16667 NA intron (NR_161380, intron 1 of 10) intron (NR_161380, intron 1 of 10) 3760 NM_001369424 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 297-13 chr2 192190591 192190843 + 3.16667 NA intron (NM_001305134, intron 2 of 9) intron (NM_001305134, intron 2 of 9) 4216 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 916.167-4 chr9 133144143 133144857 + 3.16667 NA intron (NM_001042368, intron 1 of 17) CpG 4710 NM_001042368 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 394 chr1 88595614 88595801 + 3.16667 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -88437 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 605.668 chr7 23357584 23358095 + 3.16667 NA intron (NM_006547, intron 5 of 14) intron (NM_006547, intron 5 of 14) -38607 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 848.5-3 chr19 18866412 18867137 + 3.16667 NA 3' UTR (NM_001297549, exon 24 of 24) 3' UTR (NM_001297549, exon 24 of 24) 29384 NM_021267 10715 Hs.412355 NM_021267 ENSG00000223802 CERS1 EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1 ceramide synthase 1 protein-coding 666.667-3 chr2 219459227 219459626 + 3.16667 NA intron (NM_005876, intron 6 of 40) intron (NM_005876, intron 6 of 40) -1386 NM_001173476 10290 Hs.21639 NM_005876 ENSG00000072195 SPEG APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta striated muscle enriched protein kinase protein-coding 891.833 chr12 53379478 53380140 + 3.16667 NA promoter-TSS (NM_001251825) promoter-TSS (NM_001251825) -367 NM_001251825 6667 Hs.620754 NM_003109 ENSG00000185591 SP1 - Sp1 transcription factor protein-coding 523.333-3 chr3 84547963 84548317 + 3.16667 NA Intergenic L1PA16|LINE|L1 321435 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 618.501-2 chr8 83427818 83428557 + 3.16667 NA Intergenic Intergenic 24429 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 683.667-3 chr6 141989173 141989481 + 3.16667 NA Intergenic Intergenic 99472 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 630.834-3 chr16 77699097 77699502 + 3.16667 NA Intergenic Intergenic -23193 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 697.834 chr12 54759681 54759992 + 3.16667 NA Intergenic L1MA4|LINE|L1 -94680 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 621.833 chr1 115135121 115135544 + 3.16667 NA Intergenic Intergenic -45829 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 291.167-14 chr6 153032434 153032605 + 3.16667 NA intron (NM_012419, intron 2 of 4) intron (NM_012419, intron 2 of 4) -29704 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 317.667-10 chr5 64055011 64055114 + 3.16667 NA Intergenic LTR85a|LTR|Gypsy? -92770 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 721.167-3 chr8 27764037 27764438 + 3.16667 NA intron (NR_156432, intron 2 of 7) intron (NR_156432, intron 2 of 7) 8403 NM_001304530 55246 Hs.445512 NM_018246 ENSG00000147419 CCDC25 - coiled-coil domain containing 25 protein-coding 387.834-5 chr6 40829028 40829228 + 3.16667 NA Intergenic L1MD2|LINE|L1 194152 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 1323.33 chr1 179194006 179194787 + 3.16667 NA intron (NM_007314, intron 1 of 11) intron (NM_007314, intron 1 of 11) 35281 NM_001168236 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 1266.5 chr14 72103504 72104397 + 3.16667 NA intron (NM_001370288, intron 2 of 16) MIR|SINE|MIR 170423 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 752.5 chr15 65610754 65611581 + 3.16667 NA promoter-TSS (NM_001136043) promoter-TSS (NM_001136043) -36 NR_045104 81556 Hs.6686 NM_030800 ENSG00000138614 INTS14 C15orf44|VWA9 integrator complex subunit 14 protein-coding 692.167 chr1 168178770 168179355 + 3.16667 NA promoter-TSS (NM_001031800) promoter-TSS (NM_001031800) 100 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 685.834-4 chr5 113378867 113379195 + 3.16667 NA intron (NM_001085377, intron 2 of 18) intron (NM_001085377, intron 2 of 18) 55958 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 632.001 chr1 102454969 102455176 + 3.16667 NA Intergenic Intergenic -457838 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 414.167-4 chr10 43348445 43348703 + 3.16667 NA Intergenic Intergenic -23062 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 498.833-2 chr19 39843928 39844340 + 3.16667 NA intron (NM_001436, intron 1 of 8).2 L2|LINE|L2 2245 NM_001436 2091 Hs.299002 NM_001436 ENSG00000105202 FBL FIB|FLRN|Nop1|RNU3IP1 fibrillarin protein-coding 1606 chr1 44799406 44800289 + 3.16667 NA promoter-TSS (NM_004073) promoter-TSS (NM_004073) -530 NM_004073 1263 Hs.632415 NM_004073 ENSG00000173846 PLK3 CNK|FNK|PLK-3|PRK polo like kinase 3 protein-coding 647-3 chr18 13216039 13216499 + 3.16667 NA Intergenic Intergenic -2491 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 517.834-2 chr3 76895012 76895249 + 3.16667 NA Intergenic Intergenic -144969 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 237.167-12 chr2 191555224 191555319 + 3.16667 NA Intergenic Intergenic -122801 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 488.167-3 chr2 78999179 78999854 + 3.16667 NA Intergenic AluSx|SINE|Alu -26186 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 777.667 chr7 30983347 30984335 + 3.16667 NA Intergenic Intergenic 19888 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 728.833 chr10 33261089 33261468 + 3.16667 NA intron (NM_001244973, intron 4 of 16) intron (NM_001244973, intron 4 of 16) 73389 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 1127.17 chr2 231924970 231925657 + 3.16667 NA intron (NM_024409, intron 2 of 2) CpG 1083 NM_024409 4880 Hs.247916 NM_024409 ENSG00000163273 NPPC CNP|CNP2 natriuretic peptide C protein-coding 550.166 chr18 11655192 11655468 + 3.16667 NA promoter-TSS (NR_106975) promoter-TSS (NR_106975) -389 NR_106975 102465690 NR_106975 ENSG00000283492 MIR7153 hsa-mir-7153|mir-7153 microRNA 7153 ncRNA 575.166 chr1 104130801 104131088 + 3.16667 NA Intergenic L2b|LINE|L2 57921 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 1027.33-3 chr8 17117349 17118272 + 3.16667 NA intron (NR_146233, intron 14 of 15) AluSz|SINE|Alu -38672 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 779.5-2 chr2 218068937 218069320 + 3.16667 NA non-coding (NR_034176, exon 4 of 14) non-coding (NR_034176, exon 4 of 14) 113 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 1412.33 chr5 163347445 163348556 + 3.16667 NA Intergenic Intergenic -89571 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 896.834 chr11 111841295 111841878 + 3.16667 NA intron (NM_001352418, intron 8 of 13) intron (NM_001352418, intron 8 of 13) 29695 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 352.834-5 chr2 206783865 206784123 + 3.16667 NA promoter-TSS (NR_036077) promoter-TSS (NR_036077) -686 NR_036077 100422993 NR_036077 ENSG00000283469 MIR3130-1 MIR3130-3|mir-3130-1 microRNA 3130-1 ncRNA 1221.33-2 chr3 126521999 126522751 + 3.16667 NA Intergenic Intergenic -1780 NM_152889 166012 Hs.292375 NM_152889 ENSG00000180767 CHST13 C4ST3 carbohydrate sulfotransferase 13 protein-coding 887 chr16 24504642 24505183 + 3.16667 NA Intergenic Intergenic -34654 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 784.166-2 chr7 47945177 47945642 + 3.16667 NA intron (NM_138295, intron 1 of 56) intron (NM_138295, intron 1 of 56) 3082 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 458.667-2 chr6 140854742 140854960 + 3.16667 NA Intergenic Intergenic 171037 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 1015.67-3 chr17 44865120 44865800 + 3.16667 NA intron (NM_001142605, intron 12 of 26) intron (NM_001142605, intron 12 of 26) 17577 NR_073504 51751 Hs.151787 NM_016438 ENSG00000131097 HIGD1B CLST11240|CLST11240-15 HIG1 hypoxia inducible domain family member 1B protein-coding 946 chr10 113521077 113521981 + 3.16667 NA Intergenic Intergenic -29302 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 647-4 chr19 12832521 12833020 + 3.16667 NA intron (NM_001270440, intron 2 of 6) CpG 1806 NM_001270442 83546 Hs.21162 NM_031429 ENSG00000132026 RTBDN - retbindin protein-coding 751.334 chr5 151658856 151659323 + 3.16667 NA Intergenic Intergenic -17856 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CLMAT3 CTB-113P19.1|SPARC-AS1 colorectal liver metastasis associated transcript 3 ncRNA 849-2 chr5 68962856 68963588 + 3.16667 NA Intergenic Intergenic 66705 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 1196.67-2 chr16 10514530 10515272 + 3.16667 NA TTS (NR_149081) TTS (NR_149081) 13297 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 300.5-4 chr12 51112194 51112344 + 3.16667 NA intron (NM_005653, intron 4 of 14) L1MA5A|LINE|L1 -28673 NR_045072 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 862.334-2 chr5 69024115 69024603 + 3.16667 NA intron (NR_130778, intron 1 of 3) MER91C|DNA|hAT-Tip100 5568 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 1163.17 chr2 101341624 101342654 + 3.16667 NA Intergenic MIRb|SINE|MIR 32689 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 1048-3 chr6 131628033 131628777 + 3.16667 NA promoter-TSS (NM_004830) promoter-TSS (NM_004830) -163 NM_001270521 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 776.501 chr14 99628802 99629456 + 3.16667 NA intron (NM_001329411, intron 2 of 8) intron (NM_001329411, intron 2 of 8) -15981 NM_001127258 84439 Hs.131714 NM_032425 ENSG00000182218 HHIPL1 KIAA1822|UNQ9245 HHIP like 1 protein-coding 808.834 chr18 9516603 9517337 + 3.16667 NA exon (NM_006788, exon 3 of 10) exon (NM_006788, exon 3 of 10) 41457 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 699.5 chr14 67622802 67623876 + 3.16667 NA intron (NM_001172, intron 2 of 7) intron (NM_001172, intron 2 of 7) 3419 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 619.167-2 chr9 16133722 16133998 + 3.16667 NA Intergenic MLT1J2|LTR|ERVL-MaLR 119247 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 944.334 chr10 7686727 7687677 + 3.16667 NA Intergenic Intergenic -16114 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 851.5-2 chr4 48341199 48341687 + 3.16667 NA promoter-TSS (NM_020846) promoter-TSS (NM_020846) -86 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 1356.33-2 chr4 70504844 70506086 + 3.16667 NA Intergenic Intergenic -13104 NM_212557 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 474.167-6 chr6 55827578 55827824 + 3.16667 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 47889 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 1186.67-2 chr8 56787230 56788455 + 3.16667 NA Intergenic L1MA10|LINE|L1 206025 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 541.5-3 chr13 79679171 79679962 + 3.16667 NA Intergenic Intergenic 112839 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 805.334 chr3 17233082 17233813 + 3.16667 NA intron (NM_014744, intron 17 of 21) intron (NM_014744, intron 17 of 21) 300251 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 442.667-2 chr13 80364142 80364323 + 3.16667 NA Intergenic Intergenic -23106 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 717.5-2 chr4 47490367 47490995 + 3.16667 NA intron (NM_020453, intron 1 of 22) intron (NM_020453, intron 1 of 22) 5406 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 638.833 chr3 192188111 192188649 + 3.16667 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -50250 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 632.5-3 chr4 103091790 103092363 + 3.16667 NA intron (NM_020139, intron 4 of 9) intron (NM_020139, intron 4 of 9) 7758 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 440.5-3 chr18 41391750 41392145 + 3.16667 NA Intergenic Intergenic 128730 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 729.333 chr13 30132335 30132797 + 3.16667 NA Intergenic L1MA8|LINE|L1 20508 NR_138041 102157400 Hs.639879 NR_138041 LINC00384 - long intergenic non-protein coding RNA 384 ncRNA 874 chrX 103464746 103465187 + 3.16667 NA Intergenic Intergenic 54523 NM_080879 142684 Hs.706904 NM_080879 ENSG00000172476 RAB40A RAR2|RAR2A RAB40A, member RAS oncogene family protein-coding 826.5 chr1 10428199 10428713 + 3.16667 NA Intergenic AluJb|SINE|Alu -1977 NM_198544 100526739 Hs.412311 NM_198544 ENSG00000251503 CENPS-CORT APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1 CENPS-CORT readthrough protein-coding 637.666 chr2 231800319 231800760 + 3.16667 NA intron (NM_001369483, intron 6 of 6) intron (NM_001369483, intron 6 of 6) 14094 NM_001282950 64708 Hs.335061 NM_022730 ENSG00000144524 COPS7B CSN7B|SGN7b COP9 signalosome subunit 7B protein-coding 441.167 chr16 48360663 48360879 + 3.16667 NA 3' UTR (NM_001006610, exon 2 of 2) 3' UTR (NM_001006610, exon 2 of 2) 5116 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 860.166 chr20 62808236 62808875 + 3.16667 NA intron (NM_007346, intron 3 of 6) MER58B|DNA|hAT-Charlie -2968 NR_102430 101409261 Hs.593952 NR_102430 ENSG00000229873 OGFR-AS1 - OGFR antisense RNA 1 ncRNA 383.667-5 chr2 46010600 46011074 + 3.16667 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -286570 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 966.334 chr3 153042675 153043471 + 3.16667 NA Intergenic Intergenic -119153 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 992.666 chr1 10209855 10210485 + 3.16667 NA promoter-TSS (NM_015074) promoter-TSS (NM_015074) -400 NM_183416 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 474.334-6 chr9 76447621 76447879 + 3.16667 NA intron (NM_001097634, intron 1 of 2) intron (NM_001097634, intron 1 of 2) 6084 NM_001097634 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 841.833 chr2 179421842 179422613 + 3.16667 NA Intergenic Intergenic 140361 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 791.501 chr15 74127129 74127912 + 3.16667 NA non-coding (NR_027073, exon 2 of 2) non-coding (NR_027073, exon 2 of 2) 1758 NR_152622 283731 Hs.631696 NR_027073 ENSG00000248540 LOC283731 - uncharacterized LOC283731 ncRNA 1042.83 chr1 240887743 240888451 + 3.16667 NA intron (NM_001282773, intron 4 of 15) intron (NM_001282773, intron 4 of 15) -244175 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 1087 chr10 29513181 29513941 + 3.16667 NA intron (NM_001323599, intron 17 of 38) intron (NM_001323599, intron 17 of 38) 31536 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 778.501 chr10 106624728 106625065 + 3.16667 NA intron (NM_001206569, intron 19 of 25) intron (NM_001206569, intron 19 of 25) 484731 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 841.001-2 chr20 22247787 22248478 + 3.16667 NA Intergenic Intergenic 34669 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 1405.17-2 chr18 3246918 3247823 + 3.16667 NA promoter-TSS (NM_001303047) promoter-TSS (NM_001303047) -112 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 948.833 chr2 156335031 156335740 + 3.16667 NA Intergenic Intergenic -2664 NM_173173 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 812.333-2 chr6 45922890 45923568 + 3.16667 NA intron (NR_045673, intron 1 of 4) intron (NR_045673, intron 1 of 4) 14368 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 1141.5 chr18 11040718 11041630 + 3.16667 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 107588 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 667.166 chr1 158496422 158497012 + 3.16667 NA Intergenic Intergenic 16839 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 845.167 chr17 53032700 53033419 + 3.16667 NA Intergenic L1MA3|LINE|L1 47554 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 629.667-2 chr19 27741958 27742579 + 3.16667 NA Intergenic HSAT4|Satellite|centr -51163 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1175.5 chr18 12038918 12039576 + 3.16667 NA Intergenic CpG -54596 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 555.833-2 chr16 76653414 76654149 + 3.16667 NA intron (NR_110934, intron 2 of 3) intron (NR_110934, intron 2 of 3) 18783 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 494.5-7 chr5 39159948 39160229 + 3.16667 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 59475 NM_001349333 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 625.166 chr11 107549185 107549809 + 3.16667 NA intron (NM_138775, intron 7 of 11) intron (NM_138775, intron 7 of 11) 16238 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 794.667 chr9 130700928 130701282 + 3.16667 NA intron (NM_001282709, intron 5 of 7) intron (NM_001282709, intron 5 of 7) 7325 NM_014285 23404 Hs.654643 NM_014285 ENSG00000130713 EXOSC2 RRP4|Rrp4p|SHRF|hRrp4p|p7 exosome component 2 protein-coding 628-2 chr12 112992691 112993081 + 3.16667 NA intron (NM_002535, intron 2 of 9) intron (NM_002535, intron 2 of 9) 14367 NM_016817 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 682.167 chr2 127479208 127479725 + 3.16667 NA Intergenic Intergenic 47023 NM_017969 55677 Hs.469879 NM_017969 ENSG00000163166 IWS1 - interacts with SUPT6H, CTD assembly factor 1 protein-coding 363.667-9 chr22 26873776 26874022 + 3.16667 NA intron (NR_146604, intron 3 of 5) L1ME3Cz|LINE|L1 13688 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 600.501 chr5 76710212 76710561 + 3.16667 NA Intergenic Intergenic -2017 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 1074.83-3 chr8 80029705 80030367 + 3.16667 NA exon (NM_014018, exon 1 of 3) exon (NM_014018, exon 1 of 3) 223 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 766.667-3 chr3 46378109 46379067 + 3.16667 NA intron (NR_125406, intron 2 of 3) intron (NR_125406, intron 2 of 3) 8446 NM_000579 1234 Hs.450802 NM_000579 ENSG00000160791 CCR5 CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22 C-C motif chemokine receptor 5 (gene/pseudogene) protein-coding 502.5 chr1 117055271 117056056 + 3.16667 NA intron (NR_110786, intron 1 of 3) intron (NR_110786, intron 1 of 3) 3827 NR_110786 101929099 Hs.559118 NR_110786 ENSG00000236137 LOC101929099 - uncharacterized LOC101929099 ncRNA 1184.33-3 chr7 88219780 88220578 + 3.16667 NA promoter-TSS (NM_003130) promoter-TSS (NM_003130) -95 NM_003130 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 280.166 chr1 94325821 94326015 + 3.16667 NA Intergenic Intergenic -78172 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 1501.67 chr15 45705341 45706092 + 3.16667 NA intron (NR_135680, intron 1 of 4) MIRb|SINE|MIR 521 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 1002.5-3 chr7 14457758 14458432 + 3.16667 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 383355 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 798.667 chr15 70824863 70825639 + 3.16667 NA Intergenic Intergenic -27988 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 1233 chr1 115112551 115113454 + 3.16667 NA Intergenic Intergenic -23499 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 997.333 chr7 42941317 42941868 + 3.16667 NA Intergenic Intergenic 9216 NR_156497 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 1096.17-2 chr3 3200570 3201104 + 3.16667 NA Intergenic Intergenic -21120 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 1048 chr16 1863571 1864226 + 3.16667 NA intron (NM_001163560, intron 3 of 13) AluJo|SINE|Alu 8266 NM_001163560 254528 Hs.729604 NM_152764 ENSG00000162039 MEIOB C16orf73|SPGF22|gs129 meiosis specific with OB-fold protein-coding 916.167-2 chr17 75749807 75750501 + 3.16667 NA exon (NM_000213, exon 28 of 40) exon (NM_000213, exon 28 of 40) 15038 NM_000154 2584 Hs.407966 NM_000154 ENSG00000108479 GALK1 GALK|GK1|HEL-S-19 galactokinase 1 protein-coding 700-2 chr4 109422170 109422757 + 3.16667 NA Intergenic Intergenic -11252 NM_001042734 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 1123.67 chr4 20773321 20773976 + 3.16667 NA intron (NM_025221, intron 2 of 7) intron (NM_025221, intron 2 of 7) 73190 NM_001130727 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 1159.17 chr1 160726593 160727379 + 3.16667 NA Intergenic LTR36|LTR|ERV1 -12071 NM_001282594 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 521-2 chr12 27306446 27306625 + 3.16667 NA intron (NM_015000, intron 3 of 13) intron (NM_015000, intron 3 of 13) -26301 NM_020183 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 728 chr10 42691540 42692033 + 3.16667 NA promoter-TSS (NR_120656) promoter-TSS (NR_120656) -27 NR_120656 101929397 Hs.729796 NR_120656 LINC01518 - long intergenic non-protein coding RNA 1518 ncRNA 828-3 chr6 122475832 122476355 + 3.16667 NA intron (NM_181794, intron 1 of 6) intron (NM_181794, intron 1 of 6) 4176 NM_001270393 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 820 chr3 115091932 115092439 + 3.16667 NA intron (NM_001348800, intron 1 of 11) intron (NM_001348800, intron 1 of 11) 8123 NM_001348804 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 838.501 chr11 60333794 60334440 + 3.16667 NA promoter-TSS (NM_139249) promoter-TSS (NM_139249) -765 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 753.333 chr11 120108349 120108889 + 3.16667 NA Intergenic OldhAT1|DNA|hAT-Ac 20234 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 445.334-3 chr17 19310085 19310368 + 3.16667 NA intron (NM_014964, intron 5 of 10) intron (NM_014964, intron 5 of 10) -3965 NR_048576 100874018 Hs.621672 NR_048576 ENSG00000235397 EPN2-AS1 - EPN2 antisense RNA 1 ncRNA 672.001 chr2 85017705 85018255 + 3.16667 NA intron (NM_020122, intron 1 of 6) intron (NM_020122, intron 1 of 6) 46819 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 456.5-6 chr7 108482900 108483086 + 3.16667 NA intron (NM_001256009, intron 7 of 9) intron (NM_001256009, intron 7 of 9) -26273 NM_001371124 1111-2 chr2 208373055 208374039 + 3.16667 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) 13855 NM_001309516 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 868.167-2 chr22 26672673 26673418 + 3.16667 NA non-coding (NR_003491, exon 5 of 5) non-coding (NR_003491, exon 5 of 5) 202 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 1226.5-2 chr15 72155720 72156671 + 3.16667 NA Intergenic Intergenic 37792 NM_145204 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 762.5-2 chr6 56902775 56903315 + 3.16667 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) -51129 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 1231.83 chr11 114260810 114261625 + 3.16667 NA Intergenic Intergenic -34596 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 742.499 chr12 85867183 85867763 + 3.16667 NA Intergenic Intergenic -6822 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 1257.5 chr13 44917714 44918780 + 3.16667 NA Intergenic Intergenic 71224 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 485-2 chr17 59106841 59107110 + 3.16667 NA promoter-TSS (NM_015294) promoter-TSS (NM_015294) -95 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 362 chr1 56630862 56631074 + 3.16667 NA intron (NR_135111, intron 2 of 2) intron (NR_135111, intron 2 of 2) -14346 NM_006252 5563 Hs.437039 NM_006252 ENSG00000162409 PRKAA2 AMPK|AMPK2|AMPKa2|PRKAA protein kinase AMP-activated catalytic subunit alpha 2 protein-coding 1203.33 chr11 111282926 111283894 + 3.16667 NA intron (NM_198498, intron 3 of 4) intron (NM_198498, intron 3 of 4) -15136 NM_001271458 120376 Hs.31409 NM_001136105 ENSG00000214290 COLCA2 C11orf93|CASC13|LOH11CR1G colorectal cancer associated 2 protein-coding 885.833 chr22 20916717 20917316 + 3.16667 NA promoter-TSS (NM_005207) promoter-TSS (NM_005207) -391 NR_156180 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 641.167-4 chr5 15105304 15106021 + 3.16667 NA Intergenic Intergenic 160898 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 733.001-3 chr4 146095013 146095522 + 3.16667 NA Intergenic Intergenic 26646 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 1238.17 chr5 153974318 153974853 + 3.16667 NA Intergenic Intergenic 64325 NM_001317993 10827 Hs.166551 NM_018691 ENSG00000055147 FAM114A2 133K02|C5orf3 family with sequence similarity 114 member A2 protein-coding 1068.67-2 chr8 144233551 144234466 + 3.16667 NA intron (NM_001288814, intron 13 of 41) AluY|SINE|Alu 28729 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 1274.33-4 chr8 132215410 132216095 + 3.16667 NA intron (NM_004519, intron 1 of 14) LTR16A2|LTR|ERVL -110487 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 916.333 chr19 42693536 42694452 + 3.16667 NA Intergenic Intergenic 46487 NM_021016 5671 Hs.654413 NM_021016 ENSG00000221826 PSG3 - pregnancy specific beta-1-glycoprotein 3 protein-coding 926.5-3 chr16 58511663 58512505 + 3.16667 NA non-coding (NR_040072, exon 14 of 14) non-coding (NR_040072, exon 14 of 14) -3395 NM_024860 79918 Hs.731691 NM_024860 ENSG00000103037 SETD6 - SET domain containing 6, protein lysine methyltransferase protein-coding 1115.33-4 chr21 32258022 32258909 + 3.16667 NA Intergenic Intergenic 20584 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 259.833-19 chr8 128183269 128183463 + 3.16667 NA Intergenic Intergenic 33250 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 332.333 chr1 35202239 35202530 + 3.16667 NA Intergenic Intergenic -9239 NR_136703 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 264.834-11 chr8 19031834 19031917 + 3.16667 NA Intergenic MIR3|SINE|MIR -18172 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 797.001 chr2 181742706 181743258 + 3.16667 NA Intergenic Intergenic -62317 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 772.333-2 chr2 160324120 160324595 + 3.16667 NA intron (NM_002897, intron 2 of 13) intron (NM_002897, intron 2 of 13) -52462 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 482.167-2 chr20 13771823 13772078 + 3.16667 NA intron (NM_001276380, intron 5 of 13) intron (NM_001276380, intron 5 of 13) 12936 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 760-2 chr12 64256161 64256598 + 3.16667 NA Intergenic Intergenic -34083 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 770.501 chr11 64448734 64449045 + 3.16667 NA promoter-TSS (NR_073177) promoter-TSS (NR_073177) -168 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LINC02724 - long intergenic non-protein coding RNA 2724 ncRNA 1017.83 chr18 3245990 3246711 + 3.16667 NA Intergenic Intergenic -1132 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 878.833-2 chr20 57654224 57654658 + 3.16667 NA intron (NM_001255976, intron 2 of 3) intron (NM_001255976, intron 2 of 3) -34015 NR_136660 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 835.834 chrX 100413160 100413825 + 3.16667 NA Intergenic Intergenic -3219 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 647.001-2 chr7 7761050 7761716 + 3.16667 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -42776 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 1109.5 chr1 220873922 220874651 + 3.16667 NA intron (NR_046901, intron 1 of 2) intron (NR_046901, intron 1 of 2) -5157 NM_021958 3142 Hs.74870 NM_021958 ENSG00000136630 HLX HB24|HLX1 H2.0 like homeobox protein-coding 248.5-19 chr2 97590866 97591202 + 3.16667 NA Intergenic Intergenic -1069 NM_025190 57730 Hs.532921 NM_020970 ENSG00000196912 ANKRD36B KIAA1641 ankyrin repeat domain 36B protein-coding 924.334-2 chr4 154854129 154854862 + 3.16667 NA Intergenic Intergenic 72990 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 789.334 chr14 21767848 21768395 + 3.16667 NA Intergenic MER5A1|DNA|hAT-Charlie -97104 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 493.832 chr13 36797353 36797671 + 3.16667 NA Intergenic Intergenic -21690 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 977.167 chr14 51995482 51996375 + 3.16667 NA intron (NM_016039, intron 3 of 7) intron (NM_016039, intron 3 of 7) 6382 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 1157.33-3 chr3 27658976 27659811 + 3.16667 NA Intergenic Intergenic 62930 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 788.667 chr1 110412291 110412722 + 3.16667 NA intron (NR_102697, intron 2 of 2) intron (NR_102697, intron 2 of 2) -4582 NM_006402 10542 Hs.439815 NM_006402 ENSG00000134248 LAMTOR5 HBXIP|XIP late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 protein-coding 419-5 chr15 43913447 43913691 + 3.16667 NA intron (NM_032892, intron 4 of 13) intron (NM_032892, intron 4 of 13) -35398 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 761.167 chr3 159988430 159988975 + 3.16667 NA promoter-TSS (NM_001354583) promoter-TSS (NM_001354583) -133 NM_000882 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 288.834-11 chrX 38166581 38166715 + 3.16667 NA intron (NM_001170751, intron 3 of 8) intron (NM_001170751, intron 3 of 8) 54223 NM_006307 8406 Hs.15154 NM_006307 ENSG00000101955 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi repeat containing protein X-linked protein-coding 785.333-5 chr8 22562041 22562820 + 3.16667 NA intron (NM_005775, intron 7 of 20) intron (NM_005775, intron 7 of 20) -3299 NM_001018003 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 1433.17 chr5 122101175 122102625 + 3.16667 NA Intergenic Intergenic -23641 NM_002317 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 1366.67 chr6 35139691 35140637 + 3.16667 NA 5' UTR (NM_001261821, exon 3 of 11) 5' UTR (NM_001261821, exon 3 of 11) 1175 NM_001366323 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 582.166-2 chr2 68715386 68715883 + 3.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR -19177 NM_001364820 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 683.5-2 chr8 85297229 85297626 + 3.16667 NA Intergenic Intergenic 44287 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 1746.83 chr22 25110828 25111815 + 3.16667 NA intron (NR_038941, intron 2 of 4) intron (NR_038941, intron 2 of 4) 1371 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 798.834 chr22 43388031 43388669 + 3.16667 NA Intergenic Intergenic -11981 NR_146918 105373054 NR_146918 ENSG00000236117 LINC01639 - long intergenic non-protein coding RNA 1639 ncRNA 1193.5 chr1 12124540 12125209 + 3.16667 NA intron (NM_001243, intron 10 of 14) (AAACA)n|Simple_repeat|Simple_repeat -42069 NR_107000 102465836 NR_107000 ENSG00000283789 MIR7846 hsa-mir-7846 microRNA 7846 ncRNA 625.334 chr2 77156772 77157153 + 3.16667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 170997 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 964.333-2 chr3 79086384 79086897 + 3.16667 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -67181 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 898.833-2 chr2 161586094 161586988 + 3.16667 NA Intergenic Intergenic -37794 NM_001178016 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 303.5-4 chr17 47844776 47845038 + 3.16667 NA TTS (NM_001258248) TTS (NM_001258248) -3634 NM_001145023 90507 Hs.239718 NM_138355 ENSG00000141295 SCRN2 Ses2 secernin 2 protein-coding 1163.17-2 chr8 71975008 71975911 + 3.16667 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 100125 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 866.667 chr13 58960829 58961401 + 3.16667 NA Intergenic Intergenic -727998 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 1053.83 chr1 109984232 109984842 + 3.16667 NA promoter-TSS (NM_006621) promoter-TSS (NM_006621) -228 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 1014.67-3 chr11 64553198 64553991 + 3.16667 NA Intergenic Intergenic -2347 NM_018484 55867 Hs.220844 NM_018484 ENSG00000168065 SLC22A11 OAT4|hOAT4 solute carrier family 22 member 11 protein-coding 397.834-3 chr7 25125360 25125523 + 3.16667 NA promoter-TSS (NM_018947) promoter-TSS (NM_018947) -80 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 958 chr14 22983176 22983720 + 3.16667 NA promoter-TSS (NM_032876) promoter-TSS (NM_032876) -897 NM_001289097 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding 1242.67 chr17 8079335 8080551 + 3.16667 NA intron (NM_001139, intron 6 of 14) CpG-10659 7773 NM_001139 242 Hs.136574 NM_001139 ENSG00000179477 ALOX12B 12R-LOX|ARCI2 arachidonate 12-lipoxygenase, 12R type protein-coding 592.667-2 chr2 181572921 181573293 + 3.16667 NA intron (NM_001160277, intron 2 of 12) intron (NM_001160277, intron 2 of 12) 83998 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 978.999 chr1 237562150 237562821 + 3.16667 NA intron (NM_001035, intron 27 of 104) intron (NM_001035, intron 27 of 104) 91366 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 721.167-2 chr17 71424007 71424373 + 3.16667 NA Intergenic Intergenic -222011 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1199.83-4 chr8 100559563 100560467 + 3.16667 NA promoter-TSS (NM_198401) promoter-TSS (NM_198401) -256 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 693.167-2 chr20 47196096 47196574 + 3.16667 NA Intergenic L1ME3|LINE|L1 29368 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 647.333-2 chr5 9361405 9361968 + 3.16667 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -149647 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 393.5-4 chr14 91980257 91980447 + 3.16667 NA intron (NM_004239, intron 16 of 20) intron (NM_004239, intron 16 of 20) -32650 NM_006329 10516 Hs.332708 NM_006329 ENSG00000140092 FBLN5 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|HNARMD|UP50 fibulin 5 protein-coding 986.834 chr14 29548668 29549420 + 3.16667 NA Intergenic Intergenic 378052 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 875.167 chr2 9813780 9814239 + 3.16667 NA Intergenic Intergenic -29433 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 465.834-5 chr8 115127772 115128342 + 3.16667 NA Intergenic Intergenic 539956 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 1125.33 chr8 99167939 99168697 + 3.16667 NA intron (NM_017890, intron 15 of 61) intron (NM_017890, intron 15 of 61) 155052 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 930.167-2 chr5 23139374 23140243 + 3.16667 NA Intergenic Intergenic -286464 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 790.5 chr20 56554318 56555245 + 3.16667 NA Intergenic L1ME4b|LINE|L1 21535 NM_001013646 388799 Hs.287759 NM_001013646 ENSG00000213714 FAM209B C20orf107|dJ1153D9.4 family with sequence similarity 209 member B protein-coding 1204.17 chr1 99808107 99808907 + 3.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -41854 NM_000642 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 576.167-2 chr2 70645673 70646178 + 3.16667 NA Intergenic Intergenic -92099 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 1735.67 chr12 130013657 130014848 + 3.16667 NA Intergenic Intergenic 28090 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 366.167-2 chr18 13832035 13832349 + 3.16667 NA Intergenic Intergenic 8043 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 853.668 chr16 57417012 57417522 + 3.16667 NA Intergenic Intergenic 12500 NM_002987 6361 Hs.546294 NM_002987 ENSG00000102970 CCL17 A-152E5.3|ABCD-2|SCYA17|TARC C-C motif chemokine ligand 17 protein-coding 1039.17 chr8 46029409 46030120 + 3.16667 NA Intergenic Intergenic 587879 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 1207.67 chr10 122980144 122980718 + 3.16667 NA promoter-TSS (NM_001363531) promoter-TSS (NM_001363531) 30 NM_001363531 118672 Hs.281004 NM_153336 ENSG00000179988 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 671.5-2 chr5 143968166 143968465 + 3.16667 NA Intergenic Intergenic 156154 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 797.333-3 chr3 189710504 189710927 + 3.16667 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) -78944 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 378.334 chr11 24782717 24782878 + 3.16667 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 285744 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 1001.67-3 chr20 2452077 2452754 + 3.16667 NA Intergenic LTR41|LTR|ERVL 10632 NR_003684 100113378 NR_003684 SNORD119 - small nucleolar RNA, C/D box 119 snoRNA 937.001 chr8 38384724 38385449 + 3.16667 NA Intergenic Intergenic -1355 NM_001330515 137994 Hs.696457 NM_144652 ENSG00000165046 LETM2 SLC55A2 leucine zipper and EF-hand containing transmembrane protein 2 protein-coding 474-10 chr8 63602414 63602885 + 3.16667 NA Intergenic Intergenic 136800 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 422-4 chr12 10582801 10582943 + 3.16667 NA Intergenic Intergenic 16963 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 551.333 chr17 79042471 79042942 + 3.16667 NA intron (NM_198593, intron 1 of 3) intron (NM_198593, intron 1 of 3) 8407 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 612.167 chr3 53710402 53710658 + 3.16667 NA intron (NM_001128840, intron 9 of 47) intron (NM_001128840, intron 9 of 47) 135889 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 670.5-2 chr3 140737021 140737514 + 3.16667 NA Intergenic Intergenic 59203 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 453 chr1 44714917 44715353 + 3.16667 NA intron (NM_001145636, intron 6 of 11) intron (NM_001145636, intron 6 of 11) 6766 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 1134.83 chr6 137314005 137314978 + 3.16667 NA Intergenic Intergenic -95061 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 384.667-6 chr4 79962064 79962282 + 3.16667 NA intron (NM_001286781, intron 16 of 16) intron (NM_001286781, intron 16 of 16) 111056 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 1988.5 chr3 138915292 138916532 + 3.16667 NA Intergenic CpG 28108 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 429.666-3 chr19 39986180 39986428 + 3.16667 NA Intergenic L1MA4A|LINE|L1 -10756 NM_178544 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 1049.17-2 chr2 21316911 21317907 + 3.16667 NA Intergenic Intergenic 193423 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 414.667-5 chr20 57698289 57698501 + 3.16667 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -7709 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 1231.5 chr2 72745607 72746399 + 3.16667 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 80030 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 644.501 chr12 98698827 98699122 + 3.16667 NA intron (NM_001160, intron 16 of 25) intron (NM_001160, intron 16 of 25) 53674 NM_181869 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 512.334-2 chr20 45450595 45450844 + 3.16667 NA Intergenic MIR3|SINE|MIR -19034 NM_006103 10406 Hs.2719 NM_006103 ENSG00000101443 WFDC2 EDDM4|HE4|WAP5|dJ461P17.6 WAP four-disulfide core domain 2 protein-coding 975-2 chr6 151763817 151764716 + 3.16667 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) -41407 NM_001291241 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 967.666 chr10 29949285 29949888 + 3.16667 NA Intergenic Intergenic 110000 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 373.334 chr1 210095934 210096156 + 3.16667 NA intron (NM_153262, intron 5 of 7) MIRb|SINE|MIR -136751 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 304-26 chr5 108907829 108908107 + 3.16667 NA intron (NR_146155, intron 10 of 19) intron (NR_146155, intron 10 of 19) -16638 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 611.334 chr11 7665660 7666154 + 3.16667 NA non-coding (NR_126508, exon 9 of 10) non-coding (NR_126508, exon 9 of 10) 6984 NM_001302827 51700 Hs.414362 NM_016229 ENSG00000166394 CYB5R2 B5R.2 cytochrome b5 reductase 2 protein-coding 1192.83 chr2 11778958 11779710 + 3.16667 NA intron (NM_001349203, intron 6 of 20) intron (NM_001349203, intron 6 of 20) 11890 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 963.167 chr7 26365047 26365764 + 3.16667 NA intron (NM_001318199, intron 5 of 6) intron (NM_001318199, intron 5 of 6) 1080 NM_001199838 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 513.833 chr10 69696131 69696502 + 3.16667 NA Intergenic MER119|DNA|hAT-Charlie 66069 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 409.167 chr12 98373118 98373374 + 3.16667 NA Intergenic Intergenic 83899 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 1207.5 chr6 100116239 100117125 + 3.16667 NA Intergenic Intergenic -122444 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 1053.83-4 chr20 45987015 45987689 + 3.16667 NA Intergenic Intergenic -15149 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 659.001 chr3 42229774 42230018 + 3.16667 NA Intergenic MamGypLTR2c|LTR|Gypsy 34051 NM_001174138 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 1123.33 chr10 102229680 102230378 + 3.16667 NA TTS (NM_005029) TTS (NM_005029) 3730 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 718.5-6 chr6 152952943 152953454 + 3.16667 NA Intergenic Intergenic 29843 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 1871.17 chr5 80083007 80084206 + 3.16667 NA promoter-TSS (NR_109930) promoter-TSS (NR_109930) 59 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 693.666-2 chr3 136391153 136391949 + 3.16667 NA intron (NM_005862, intron 22 of 33) AluSc|SINE|Alu 141211 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 804.834 chr3 99789347 99789918 + 3.16667 NA intron (NM_001850, intron 3 of 4) MamRep434|DNA|TcMar-Tigger -28230 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 402.5-2 chr16 2003933 2004123 + 3.16667 NA intron (NM_178167, intron 3 of 13) CpG 5793 NM_178167 90850 Hs.343828 NM_178167 ENSG00000167962 ZNF598 HEL2 zinc finger protein 598 protein-coding 531.667-6 chr4 179307527 179307990 + 3.16667 NA Intergenic L1M3f|LINE|L1 -1399822 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 785.166 chr1 119367357 119367946 + 3.16667 NA Intergenic Intergenic -1134 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 1125-2 chr7 116235764 116236722 + 3.16667 NA intron (NM_015641, intron 2 of 6) intron (NM_015641, intron 2 of 6) 13290 NM_152829 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 979.667-4 chr2 172127210 172127937 + 3.16667 NA Intergenic L1MEf|LINE|L1 24567 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 1046.83 chr11 110447877 110448470 + 3.16667 NA intron (NM_004109, intron 2 of 3) intron (NM_004109, intron 2 of 3) 18225 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 1115.33-2 chr12 117836918 117837879 + 3.16667 NA intron (NM_173598, intron 3 of 19) intron (NM_173598, intron 3 of 19) 131592 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 393.501 chr14 74536921 74537153 + 3.16667 NA intron (NM_000428, intron 8 of 35) intron (NM_000428, intron 8 of 35) 43272 NM_194279 122961 Hs.291079 NM_194279 ENSG00000165898 ISCA2 HBLD1|ISA2|MMDS4|c14_5557 iron-sulfur cluster assembly 2 protein-coding 954.5 chr19 55653561 55654342 + 3.16667 NA promoter-TSS (NM_007279) promoter-TSS (NM_007279) -99 NM_007279 11338 Hs.528007 NM_007279 ENSG00000063244 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 1173.5 chr2 228039527 228040398 + 3.16667 NA intron (NM_030623, intron 3 of 10) intron (NM_030623, intron 3 of 10) 141683 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 577.5-6 chr8 8750678 8751173 + 3.16667 NA Intergenic Intergenic 48988 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 976.166 chr2 102615789 102616604 + 3.16667 NA Intergenic Intergenic -3357 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 671.833 chr1 12208840 12209293 + 3.16667 NA 3' UTR (NM_001066, exon 10 of 10) 3' UTR (NM_001066, exon 10 of 10) 17353 NR_039775 100616438 NR_039775 ENSG00000263676 MIR4632 - microRNA 4632 ncRNA 1642.83 chr13 31537773 31538567 + 3.16667 NA Intergenic Intergenic -201356 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 852.334 chr20 58238041 58238596 + 3.16667 NA intron (NR_003505, intron 13 of 16) intron (NR_003505, intron 13 of 16) -9665 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 660.333-2 chr9 128863533 128864104 + 3.16667 NA intron (NM_001352997, intron 1 of 13) intron (NM_001352997, intron 1 of 13) -3286 NR_148225 883 Hs.495250 NM_004059 ENSG00000171097 KYAT1 CCBL1|GTK|KAT1|KATI kynurenine aminotransferase 1 protein-coding 246-9 chr14 47992683 47992838 + 3.16667 NA Intergenic L1M4|LINE|L1 -197746 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 826.667 chr20 54219472 54220040 + 3.16667 NA 3' UTR (NM_002623, exon 4 of 4) 3' UTR (NM_002623, exon 4 of 4) 11669 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 453.5-2 chr12 68686501 68686751 + 3.16667 NA promoter-TSS (NM_001330192) promoter-TSS (NM_001330192) 233 NR_038930 100507250 Hs.600731 NR_038930 ENSG00000247363 LOC100507250 - uncharacterized LOC100507250 ncRNA 737.667 chr4 4488194 4488934 + 3.16667 NA intron (NM_001346282, intron 1 of 10) intron (NM_001346282, intron 1 of 10) -6864 NR_126434 104472519 Hs.691848 NR_126434 ENSG00000248221 STX18-IT1 - STX18 intronic transcript 1 ncRNA 464.667-3 chr15 38440213 38440673 + 3.16667 NA Intergenic L1PB4|LINE|L1 -13684 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 695.834-2 chr1 235468877 235469201 + 3.16667 NA intron (NM_152490, intron 6 of 11) intron (NM_152490, intron 6 of 11) 35413 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 1049.5 chr14 25406730 25407426 + 3.16667 NA Intergenic Intergenic -356781 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 767.833-3 chr5 1174400 1174982 + 3.16667 NA intron (NR_109911, intron 3 of 4) intron (NR_109911, intron 3 of 4) 3914 NR_109911 101928857 Hs.593732 NR_109911 ENSG00000249201 CTD-3080P12.3 - uncharacterized LOC101928857 ncRNA 689.167 chr10 112137184 112137636 + 3.16667 NA Intergenic Intergenic 46355 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 990.667 chr2 64049511 64050106 + 3.16667 NA Intergenic Intergenic -30380 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 355.834-4 chr15 62850840 62851240 + 3.16667 NA Intergenic Intergenic 27083 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 692.833 chr14 27672216 27672774 + 3.16667 NA intron (NR_148992, intron 1 of 2) L1M4a1|LINE|L1 726 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 944.001 chr1 153509546 153510657 + 3.16667 NA Intergenic Intergenic 25890 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA|S10A6 S100 calcium binding protein A6 protein-coding 1547.67 chr19 11381034 11382158 + 3.16667 NA intron (NR_033663, intron 4 of 7) CpG-13730 2718 NR_033663 2057 Hs.631624 NM_000121 ENSG00000187266 EPOR EPO-R erythropoietin receptor protein-coding 1226.83 chr16 56513725 56514437 + 3.16667 NA intron (NM_031885, intron 2 of 16) intron (NM_031885, intron 2 of 16) 5943 NM_031885 583 Hs.333738 NM_031885 ENSG00000125124 BBS2 BBS|RP74 Bardet-Biedl syndrome 2 protein-coding 857.501 chr22 39121958 39122556 + 3.16667 NA Intergenic Intergenic 25013 NM_001166002 164668 Hs.440515 NM_181773 ENSG00000100298 APOBEC3H A3H|ARP-10|ARP10 apolipoprotein B mRNA editing enzyme catalytic subunit 3H protein-coding 924.334-3 chr8 102807378 102808026 + 3.16667 NA non-coding (NR_149020, exon 1 of 2) non-coding (NR_149020, exon 1 of 2) 880 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 886.5-2 chr9 122464798 122465688 + 3.16667 NA Intergenic MER54B|LTR|ERVL 12683 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 1321.17 chr2 231714429 231715634 + 3.16667 NA Intergenic MIRc|SINE|MIR 1717 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 761.501 chr9 97633329 97633839 + 3.16667 NA promoter-TSS (NM_002486) promoter-TSS (NM_002486) 161 NM_001351506 4686 Hs.595669 NM_002486 ENSG00000136937 NCBP1 CBP80|NCBP|Sto1 nuclear cap binding protein subunit 1 protein-coding 1003.83 chr4 86895618 86896336 + 3.16667 NA Intergenic Intergenic -3555 NM_001369888 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 478.167-3 chr13 41054180 41054519 + 3.16667 NA intron (NM_001370329, intron 1 of 9) intron (NM_001370329, intron 1 of 9) 7037 NM_001370329 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 457.667-4 chr19 51097060 51097672 + 3.16667 NA TTS (NM_145232) TTS (NM_145232) 11043 NM_145232 90353 Hs.148425 NM_145232 ENSG00000142544 CTU1 ATPBD3|NCS6 cytosolic thiouridylase subunit 1 protein-coding 502.667 chr16 19055357 19055540 + 3.16667 NA intron (NR_136733, intron 13 of 14) AluSx1|SINE|Alu 12035 NR_119382 102723385 Hs.569608 NR_119379 ENSG00000261465 LOC102723385 - uncharacterized LOC102723385 ncRNA 691.5-3 chr2 227862397 227862772 + 3.16667 NA Intergenic Intergenic -8792 NM_001330004 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 577.5-3 chr16 82456762 82457239 + 3.16667 NA Intergenic Intergenic -169969 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 630.167 chr17 81601533 81601957 + 3.16667 NA intron (NM_001369698, intron 8 of 16) intron (NM_001369698, intron 8 of 16) -24312 NR_130139 55666 Hs.464333 NM_017921 ENSG00000182446 NPLOC4 NPL4 NPL4 homolog, ubiquitin recognition factor protein-coding 795.833-2 chr3 51799845 51800327 + 3.16667 NA Intergenic Charlie7|DNA|hAT-Charlie -17517 NR_038214 100506840 Hs.254808 NR_038213 ENSG00000224792 IQCF4 - IQ motif containing F5 pseudogene pseudo 493.334-2 chr2 100243171 100243437 + 3.16667 NA intron (NR_103730, intron 1 of 2) intron (NR_103730, intron 1 of 2) 35050 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 463.5 chr15 34061820 34062367 + 3.16667 NA intron (NM_012125, intron 2 of 2) intron (NM_012125, intron 2 of 2) -22889 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 1115.33-3 chr2 44392358 44393116 + 3.16667 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 30790 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 285.5-10 chr16 709691 709863 + 3.16667 NA Intergenic Intergenic -3976 NM_153350 146330 Hs.513244 NM_153350 ENSG00000127585 FBXL16 C16orf22|Fbl16|c380A1.1 F-box and leucine rich repeat protein 16 protein-coding 1020.33 chr3 82329255 82329882 + 3.16667 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 343426 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 787.5-3 chr7 26368132 26368752 + 3.16667 NA intron (NM_001318199, intron 5 of 6) intron (NM_001318199, intron 5 of 6) 4117 NM_001199838 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 474.833-2 chr15 56491092 56491401 + 3.16667 NA Intergenic Intergenic -26109 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 359-8 chr2 96532090 96532385 + 3.16667 NA promoter-TSS (NR_135564) promoter-TSS (NR_135564) 69 NR_135564 105373496 Hs.570138 NR_135564 ENSG00000235480 LOC105373496 - uncharacterized LOC105373496 ncRNA 577.666-2 chr2 6897120 6897948 + 3.16667 NA 3' UTR (NM_080657, exon 6 of 6) 3' UTR (NM_080657, exon 6 of 6) 19757 NM_080657 91543 Hs.17518 NM_080657 ENSG00000134321 RSAD2 2510004L01Rik|cig33|cig5|vig1 radical S-adenosyl methionine domain containing 2 protein-coding 1279.5 chr16 72241485 72242310 + 3.16667 NA Intergenic Intergenic -69447 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 347-24 chr7 118613575 118613819 + 3.16667 NA Intergenic Intergenic 388993 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 632.5-2 chr22 36612045 36612356 + 3.16667 NA intron (NM_006078, intron 1 of 3) MIR|SINE|MIR -83034 NR_156418 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 760.5 chr5 115839145 115839626 + 3.16667 NA intron (NM_004707, intron 1 of 3) intron (NM_004707, intron 1 of 3) 2180 NR_033362 9140 Hs.264482 NM_004707 ENSG00000145782 ATG12 APG12|APG12L|FBR93|HAPG12 autophagy related 12 protein-coding 933.834 chr9 38672288 38672774 + 3.16667 NA Intergenic Intergenic 51443 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 777.167-2 chr22 22883688 22884563 + 3.16667 NA Intergenic Intergenic -2142 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 966.666 chr6 41602924 41603576 + 3.16667 NA TTS (NM_001012426) TTS (NM_001012426) 4527 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 413.5-5 chr6 97440722 97440976 + 3.16667 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 135263 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 646.5 chr1 203038323 203038652 + 3.16667 NA intron (NM_001304331, intron 1 of 29) intron (NM_001304331, intron 1 of 29) 11996 NM_001304332 8497 Hs.153648 NM_015053 ENSG00000143847 PPFIA4 - PTPRF interacting protein alpha 4 protein-coding 671.667-3 chr19 51657124 51657566 + 3.16667 NA Intergenic L1MCb|LINE|L1 -10466 NM_001098612 100049587 Hs.707374 NM_001098612 ENSG00000254415 SIGLEC14 - sialic acid binding Ig like lectin 14 protein-coding 808.333 chr17 49764197 49764685 + 3.16667 NA promoter-TSS (NM_030802) promoter-TSS (NM_030802) -310 NM_030802 81558 Hs.514308 NM_030802 ENSG00000121104 FAM117A - family with sequence similarity 117 member A protein-coding 439.834-4 chr2 47360244 47360521 + 3.16667 NA Intergenic Intergenic -8766 NM_002354 4072 Hs.542050 NM_002354 ENSG00000119888 EPCAM DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1 epithelial cell adhesion molecule protein-coding 615.5-2 chr8 46668421 46668820 + 3.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie -50977 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 305.834-8 chr5 14648607 14648821 + 3.16667 NA Intergenic Intergenic 3668 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 768.5 chr3 187616040 187616895 + 3.16667 NA Intergenic Intergenic 53927 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 474.667-7 chr6 155177538 155177788 + 3.16667 NA intron (NM_012454, intron 9 of 25) intron (NM_012454, intron 9 of 25) -39303 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 967.667 chr3 51100025 51100754 + 3.16667 NA intron (NM_004947, intron 9 of 52) L1MEa|LINE|L1 -284902 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 588.001-2 chr5 6576819 6577555 + 3.16667 NA Intergenic MLT2C1|LTR|ERVL -4949 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 1009.33-2 chr19 33125698 33126291 + 3.16667 NA intron (NR_135270, intron 19 of 20) intron (NR_135270, intron 19 of 20) -6120 NM_173479 126248 Hs.211046 NM_173479 ENSG00000166359 WDR88 PQWD WD repeat domain 88 protein-coding 1222.83 chr3 107235584 107236348 + 3.16667 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 4672 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 650.167 chr13 32001245 32001490 + 3.16667 NA Intergenic Intergenic 30272 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 396.834-2 chr14 46192441 46192775 + 3.16667 NA intron (NR_102702, intron 1 of 3) L1M1|LINE|L1 128449 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 733.001-2 chr4 109406081 109406789 + 3.16667 NA Intergenic Intergenic -27280 NM_001042734 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 908.167 chr6 124870469 124870880 + 3.16667 NA Intergenic Intergenic -91871 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 588.834 chr10 122980781 122981315 + 3.16667 NA intron (NM_153336, intron 1 of 6) MamRep137|DNA|TcMar-Tigger 647 NM_001363531 118672 Hs.281004 NM_153336 ENSG00000179988 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 1067.17 chr11 20132411 20133195 + 3.16667 NA Intergenic L1M3f|LINE|L1 27672 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 1001.83-2 chr9 122350483 122351238 + 3.16667 NA Intergenic Intergenic -19673 NM_001271368 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 1150.17-2 chr3 4350422 4351478 + 3.16667 NA Intergenic A-rich|Low_complexity|Low_complexity 47646 NM_006515 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 1051 chr11 7098156 7098842 + 3.16667 NA Intergenic Intergenic 9501 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 385.167-4 chr10 57439070 57439289 + 3.16667 NA Intergenic Intergenic -134620 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 677.834 chr1 242017746 242018128 + 3.16667 NA Intergenic Intergenic -18839 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 533.334 chr2 155251058 155251316 + 3.16667 NA Intergenic Intergenic 552492 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 239.334-14 chr8 66919429 66919582 + 3.16667 NA 3' UTR (NM_173518, exon 15 of 15) 3' UTR (NM_173518, exon 15 of 15) 3044 NR_002598 641648 NR_002598 ENSG00000254341 SNORD87 HBII-276|U87 small nucleolar RNA, C/D box 87 snoRNA 732.833 chr5 66829665 66830050 + 3.16667 NA intron (NM_015183, intron 1 of 27) (TAATAT)n|Simple_repeat|Simple_repeat 1084 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 883.667-3 chr3 114290573 114291255 + 3.16667 NA Intergenic Intergenic -3114 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 947 chr3 123558992 123559702 + 3.16667 NA intron (NM_001329784, intron 3 of 8) intron (NM_001329784, intron 3 of 8) 25270 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 503.333-2 chr19 33778043 33778519 + 3.16667 NA Intergenic CpG -18589 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 1312.33 chr11 20111635 20113067 + 3.16667 NA intron (NM_182964, intron 36 of 37) intron (NM_182964, intron 36 of 37) 48124 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 652.666-2 chr9 113401061 113401707 + 3.16667 NA promoter-TSS (NM_001317745) promoter-TSS (NM_001317745) -46 NM_001003945 210 Hs.1227 NM_000031 ENSG00000148218 ALAD ALADH|PBGS aminolevulinate dehydratase protein-coding 1101.5 chr12 122356055 122356586 + 3.16667 NA intron (NM_198240, intron 5 of 23) MER119|DNA|hAT-Charlie -39222 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 923.334-2 chr11 66067925 66068776 + 3.16667 NA intron (NM_006842, intron 21 of 21) intron (NM_006842, intron 21 of 21) -1922 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 898.001-2 chr4 163554610 163555307 + 3.16667 NA intron (NM_017923, intron 2 of 3) intron (NM_017923, intron 2 of 3) 58576 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 734.001 chr4 185597713 185598210 + 3.16667 NA intron (NM_001145672, intron 18 of 20) intron (NM_001145672, intron 18 of 20) 58785 NM_001145675 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 467.5-2 chr13 94601625 94601917 + 3.16667 NA promoter-TSS (NM_180989) promoter-TSS (NM_180989) -86 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 1034 chr4_GL383527v1_alt 126327 127035 + 3.16667 NA Intergenic MIRb|SINE|MIR -8198 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 1072.67 chr10 70815181 70816102 + 3.16667 NA promoter-TSS (NM_003901) promoter-TSS (NM_003901) -307 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 825.834 chr16 29943679 29944509 + 3.16667 NA Intergenic L2c|LINE|L2 -17868 NM_178863 253980 Hs.534590 NM_178863 ENSG00000174943 KCTD13 BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1 potassium channel tetramerization domain containing 13 protein-coding 295.667 chr1 87377478 87377654 + 3.16667 NA Intergenic L1PREC2|LINE|L1 -5911 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 809.334-2 chr5 83567619 83568432 + 3.16667 NA intron (NM_001164098, intron 11 of 13) intron (NM_001164098, intron 11 of 13) -5711 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 809.834 chr5 44774470 44774928 + 3.16667 NA intron (NR_109865, intron 1 of 2) L1MA2|LINE|L1 34094 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 796.666 chr11 19311320 19311990 + 3.16667 NA Intergenic Intergenic -39069 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 1023.83-2 chr3 196608740 196609507 + 3.16667 NA Intergenic Intergenic 23464 NR_132101 101929769 Hs.518527 NR_132101 ENSG00000232065 LINC01063 - long intergenic non-protein coding RNA 1063 ncRNA 955 chr8 100258487 100259108 + 3.16667 NA exon (NM_001353838, exon 10 of 10) exon (NM_001353838, exon 10 of 10) 43396 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 653.833-3 chr7 5487002 5487462 + 3.16667 NA intron (NM_024963, intron 4 of 4) intron (NM_024963, intron 4 of 4) 8685 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 654.166 chr1 214585038 214585578 + 3.16667 NA Intergenic Intergenic -17887 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 517.333-6 chr7 76317896 76318217 + 3.16667 NA Intergenic Intergenic 15383 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 915.834 chr19 13879932 13880501 + 3.16667 NA intron (NM_001098622, intron 1 of 1) CpG 2967 NM_001098622 342977 Hs.127982 NM_001098622 ENSG00000187556 NANOS3 NANOS1L|NOS3|ZC2HC12C nanos C2HC-type zinc finger 3 protein-coding 590.333 chr4 112633251 112633642 + 3.16667 NA intron (NM_018392, intron 1 of 27) (ATAA)n|Simple_repeat|Simple_repeat -3518 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 836.333-2 chr22 40044258 40045002 + 3.16667 NA promoter-TSS (NM_001024843) promoter-TSS (NM_001024843) -100 NR_163486 114841040 Hs.474880 NR_163486 LOC114841040 - uncharacterized LOC114841040 ncRNA 783.667 chr5 114450024 114450513 + 3.16667 NA intron (NR_130785, intron 11 of 12) intron (NR_130785, intron 11 of 12) 16757 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 474.667-4 chr2 169753067 169753224 + 3.16667 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 19313 NM_144711 151230 Hs.655150 NM_144711 ENSG00000213160 KLHL23 DITHP kelch like family member 23 protein-coding 887.167-2 chr5 112551358 112552080 + 3.16667 NA Intergenic Intergenic -76717 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 1171.83 chr16 35505967 35507005 + 3.16667 NA non-coding (NR_034018, exon 1 of 3) non-coding (NR_034018, exon 1 of 3) 684 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 907.5-3 chr9 97398968 97399734 + 3.16667 NA Intergenic Intergenic -2660 NR_026847 286359 Hs.132262 NM_182600 LOC286359 - uncharacterized LOC286359 ncRNA 985.834 chr10 120423311 120424038 + 3.16667 NA Intergenic Intergenic -33280 NR_134516 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 440.334-2 chr11 3852680 3852886 + 3.16667 NA Intergenic L1MB2|LINE|L1 -2881 NM_001277962 6786 Hs.501735 NM_003156 ENSG00000167323 STIM1 D11S4896E|GOK|IMD10|STRMK|TAM|TAM1 stromal interaction molecule 1 protein-coding 590.501-2 chr2 88454962 88455336 + 3.16667 NA Intergenic Intergenic -2456 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 901.501 chr6 118800271 118800913 + 3.16667 NA Intergenic Intergenic 17884 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 1020.17-2 chr4 41962802 41963337 + 3.16667 NA Intergenic Intergenic -18687 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 905.334 chr5 177500890 177501470 + 3.16667 NA TTS (NM_001144876) TTS (NM_001144876) -3575 NM_213636 9260 Hs.533040 NM_005451 ENSG00000196923 PDLIM7 LMP1|LMP3 PDZ and LIM domain 7 protein-coding 1264.5 chr1 23771478 23772574 + 3.16667 NA intron (NR_038280, intron 3 of 3) AluJb|SINE|Alu 6271 NR_038280 100506963 Hs.592549 NR_038280 ENSG00000236810 ELOA-AS1 TCEB3-AS1 ELOA antisense RNA 1 ncRNA 1164.17 chr17 35119285 35120263 + 3.16667 NA promoter-TSS (NR_037712) promoter-TSS (NR_037712) -16 NM_133629 5892 Hs.631757 NM_002878 ENSG00000185379 RAD51D BROVCA4|R51H3|RAD51L3|TRAD RAD51 paralog D protein-coding 807.333 chr1 95043305 95043993 + 3.16667 NA intron (NM_001305242, intron 2 of 4) intron (NM_001305242, intron 2 of 4) -17947 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 400.333 chr11 94501952 94502155 + 3.16667 NA Intergenic Intergenic 8069 NM_017704 54851 Hs.29052 NM_017704 ENSG00000168876 ANKRD49 FGIF|GBIF ankyrin repeat domain 49 protein-coding 528.834 chr13 62387499 62387883 + 3.16667 NA Intergenic Intergenic 64034 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 1004 chr1 69737499 69738051 + 3.16667 NA intron (NM_001366839, intron 3 of 25) LTR55|LTR|ERVL? 168434 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 431-11 chr4 61456363 61456520 + 3.16667 NA intron (NM_001371343, intron 2 of 23) (AT)n|Simple_repeat|Simple_repeat 254269 NM_001371342 567.833 chr18 33839426 33839808 + 3.16667 NA Intergenic Intergenic 208995 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 936.499 chr17 65277821 65278545 + 3.16667 NA Intergenic Intergenic 140813 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 256.667-4 chr10 71270284 71270526 + 3.16667 NA intron (NM_001244889, intron 1 of 15) L2a|LINE|L2 -48848 NR_033413 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 1502.5 chr6 52996193 52997033 + 3.16667 NA TTS (NR_001445) TTS (NR_001445) 993 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 596.167 chr1 23691427 23691710 + 3.16667 NA promoter-TSS (NM_000975) promoter-TSS (NM_000975) -211 NM_001199802 6135 Hs.719951 NM_000975 ENSG00000142676 RPL11 DBA7|GIG34|L11|uL5 ribosomal protein L11 protein-coding 1393.66 chr4 80360527 80361723 + 3.16667 NA intron (NM_152770, intron 1 of 5) intron (NM_152770, intron 1 of 5) 25405 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 759.5-5 chr22 20961654 20962099 + 3.16667 NA intron (NR_110537, intron 1 of 1) intron (NR_110537, intron 1 of 1) -3296 NM_144704 150209 Hs.723246 NM_144704 ENSG00000183773 AIFM3 AIFL apoptosis inducing factor mitochondria associated 3 protein-coding 676.333 chr2 28396909 28397278 + 3.16667 NA intron (NM_005253, intron 1 of 3) intron (NM_005253, intron 1 of 3) -2421 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 925.501 chr1 101238808 101239353 + 3.16667 NA exon (NM_001400, exon 2 of 2) exon (NM_001400, exon 2 of 2) 2331 NM_001320730 1901 Hs.154210 NM_001400 ENSG00000170989 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 820.001 chr10 76311666 76312176 + 3.16667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 529160 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 1387.67 chr2 1886305 1886940 + 3.16667 NA intron (NM_015025, intron 17 of 24) intron (NM_015025, intron 17 of 24) -142107 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 438-11 chr9 122123108 122123383 + 3.16667 NA Intergenic Intergenic -3078 NR_039690 100616312 NR_039690 ENSG00000266583 MIR4478 mir-4478 microRNA 4478 ncRNA 817.5-3 chr9 68582480 68583558 + 3.16667 NA Intergenic L1MA8|LINE|L1 -36417 NR_109769 101927015 Hs.406454 NR_109769 ENSG00000234506 LINC01506 - long intergenic non-protein coding RNA 1506 ncRNA 269.833-4 chr12 38316554 38316677 + 3.16667 NA promoter-TSS (NM_001308340) promoter-TSS (NM_001308340) -159 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 336.667-5 chr16 10954055 10954302 + 3.16667 NA intron (NM_015226, intron 1 of 22) L1M5|LINE|L1 9614 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 644.834 chr2 240914308 240914755 + 3.16667 NA intron (NM_001351305, intron 1 of 31) intron (NM_001351305, intron 1 of 31) 8195 NM_001351305 728763 Hs.647892 NM_001351305 ENSG00000226321 CROCC2 - ciliary rootlet coiled-coil, rootletin family member 2 protein-coding 438.5-5 chr4 170259654 170260090 + 3.16667 NA intron (NR_125889, intron 1 of 2) LTR33C|LTR|ERVL 33281 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 435.166-2 chr12 59409646 59409852 + 3.16667 NA Intergenic Intergenic -186280 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 1513.5 chr11 26296261 26297653 + 3.16667 NA intron (NM_001313726, intron 1 of 27) L3|LINE|CR1 -8950 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 624.667 chr3 122942820 122943102 + 3.16667 NA intron (NR_046079, intron 4 of 22) intron (NR_046079, intron 4 of 22) 33173 NM_001256347 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 931.501 chr2 181058730 181059375 + 3.16667 NA intron (NM_001278555, intron 4 of 5) intron (NM_001278555, intron 4 of 5) -64785 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 292.834-5 chr3 127249176 127249363 + 3.16667 NA Intergenic LTR38-int|LTR|ERV1 38777 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 807.834 chr1 205335341 205336113 + 3.16667 NA TTS (NM_018203) TTS (NM_018203) -13982 NM_030952 81788 Hs.497512 NM_030952 ENSG00000163545 NUAK2 SNARK NUAK family kinase 2 protein-coding 1518.83 chr10 18238247 18239339 + 3.16667 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) -21929 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 244.5-15 chr19 7568470 7568696 + 3.16667 NA Intergenic Intergenic -27280 NM_001080429 57662 Hs.17686 NM_020902 ENSG00000076826 CAMSAP3 KIAA1543|NEZHA|PPP1R80 calmodulin regulated spectrin associated protein family member 3 protein-coding 493.167-2 chr18 1984297 1984505 + 3.16667 NA Intergenic Intergenic 587104 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 1090.67 chr11 65884589 65885389 + 3.16667 NA exon (NM_198897, exon 7 of 10) exon (NM_198897, exon 7 of 10) 3482 NM_198897 9158 Hs.7768 NM_004214 ENSG00000172500 FIBP FGFIBP|FIBP-1|TROFAS FGF1 intracellular binding protein protein-coding 1300 chr5 28766293 28767194 + 3.16667 NA Intergenic Intergenic -160127 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 556.167-4 chr12 54603112 54603458 + 3.16667 NA Intergenic Intergenic 7177 NR_003039 644076 Hs.483519 NR_003039 ENSG00000257780 GLYCAM1 - glycosylation dependent cell adhesion molecule 1 (pseudogene) pseudo 427.167-2 chr1 156130112 156130820 + 3.16667 NA intron (NM_001282624, intron 2 of 10) intron (NM_001282624, intron 2 of 10) 4296 NM_001257374 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 869 chr10 104291152 104292058 + 3.16667 NA intron (NM_001191014, intron 3 of 4) intron (NM_001191014, intron 3 of 4) 16439 NM_001191014 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 699.334-2 chr5 139775036 139775320 + 3.16667 NA Intergenic Intergenic -20630 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 686.834-2 chr6 88870887 88871235 + 3.16667 NA intron (NM_001286428, intron 7 of 13) intron (NM_001286428, intron 7 of 13) 92557 NM_001286428 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 1128.67 chr19 48971052 48971738 + 3.16667 NA intron (NM_002103, intron 12 of 15) intron (NM_002103, intron 12 of 15) 6086 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 875.501 chr3 115217492 115218045 + 3.16667 NA Intergenic Intergenic -70480 NM_001348801 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 473.333-8 chrX 55907880 55908407 + 3.16667 NA promoter-TSS (NM_001324105) promoter-TSS (NM_001324105) 20 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 753.667-2 chrX 53093072 53094049 + 3.16667 NA promoter-TSS (NR_145976) promoter-TSS (NR_145976) -597 NR_145976 102723508 Hs.633244 NR_110456 KANTR LINC01155|Spasm KDM5C adjacent transcript ncRNA 938.5 chr10 127715777 127716403 + 3.16667 NA Intergenic Intergenic -21095 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 281.333-9 chr12 31585415 31585552 + 3.16667 NA intron (NM_001308339, intron 1 of 22) intron (NM_001308339, intron 1 of 22) -4440 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 645.834-2 chr11 15819508 15819838 + 3.16667 NA Intergenic MamGypLTR3|LTR|Gypsy 149948 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 666.667 chr16 2423102 2423510 + 3.16667 NA intron (NR_003574, intron 14 of 16) intron (NR_003574, intron 14 of 16) -6141 NM_001323538 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 362.167 chr1 151251886 151252108 + 3.16667 NA Intergenic Intergenic -2737 NM_001330692 5710 Hs.505059 NM_002810 ENSG00000159352 PSMD4 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 proteasome 26S subunit, non-ATPase 4 protein-coding 467-6 chr3 142994156 142994586 + 3.16667 NA intron (NR_125393, intron 3 of 4) intron (NR_125393, intron 3 of 4) 7096 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 632.834-3 chr13 66986569 66986921 + 3.16667 NA TTS (NR_046636) TTS (NR_046636) -4141 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 939.334 chr3 61371051 61371926 + 3.16667 NA Intergenic Intergenic -120027 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 372.167-4 chr20 35641109 35641317 + 3.16667 NA intron (NM_001198863, intron 1 of 15) MIR3|SINE|MIR 12696 NM_003915 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 635.167 chr10 88565029 88565558 + 3.16667 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 18025 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 1479 chr21 14253079 14254032 + 3.16667 NA Intergenic Intergenic -20244 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 964.334 chr6 131923313 131923939 + 3.16667 NA Intergenic MamGypLTR3a|LTR|Gypsy 27746 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 424.667-3 chr7 23262002 23262429 + 3.16667 NA intron (NM_002510, intron 6 of 10) intron (NM_002510, intron 6 of 10) 15440 NM_002510 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 1422.17 chr10 4814490 4815479 + 3.16667 NA Intergenic Intergenic -11193 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 770.833-2 chr9 128035314 128035761 + 3.16667 NA Intergenic Intergenic 31783 NM_197956 203245 Hs.373606 NM_197956 ENSG00000171169 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 641-2 chr22 30605616 30606083 + 3.16667 NA intron (NM_001282327, intron 1 of 16) intron (NM_001282327, intron 1 of 16) 1164 NM_001282328 23481 Hs.517543 NM_014303 ENSG00000100029 PES1 NOP7|PES pescadillo ribosomal biogenesis factor 1 protein-coding 851 chr1 25895204 25895934 + 3.16667 NA intron (NM_001145454, intron 4 of 4) MER102b|DNA|hAT-Charlie 10584 NM_203401 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 848.167 chr1 68111558 68112281 + 3.16667 NA intron (NR_040077, intron 6 of 9) intron (NR_040077, intron 6 of 9) -60288 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 428.666 chr1 152442831 152443124 + 3.16667 NA Intergenic Intergenic -28714 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 735.832 chr22 43992954 43993404 + 3.16667 NA intron (NM_015380, intron 14 of 14) intron (NM_015380, intron 14 of 14) -6032 NM_001003828 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 1024.17 chr16 48622920 48624048 + 3.16667 NA Intergenic Intergenic -13304 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 1175.67-2 chr6 151475488 151476491 + 3.16667 NA Intergenic Intergenic -18028 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 651.5-2 chr9 100602104 100602743 + 3.16667 NA Intergenic L2b|LINE|L2 24344 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 432.333 chr11 66417863 66418508 + 3.16667 NA Intergenic Intergenic -2819 NM_001318804 266743 Hs.256036 NM_178864 ENSG00000174576 NPAS4 Le-PAS|NXF|PASD10|bHLHe79 neuronal PAS domain protein 4 protein-coding 658.666 chr7 8436843 8437341 + 3.16667 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 3483 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 245-35 chr8 33323938 33324037 + 3.16667 NA Intergenic MLT1J1|LTR|ERVL-MaLR 149159 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 1360.83 chr12 72016620 72017288 + 3.16667 NA intron (NM_173353, intron 8 of 10) GA-rich|Low_complexity|Low_complexity 78109 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 727.833 chr20 44734890 44735493 + 3.16667 NA intron (NR_132377, intron 3 of 4) intron (NR_132377, intron 3 of 4) -10674 NM_022358 60598 Hs.528664 NM_022358 ENSG00000124249 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium two pore domain channel subfamily K member 15 protein-coding 401.167-5 chr17 48048132 48048302 + 3.16667 NA promoter-TSS (NM_001330261) promoter-TSS (NM_001330261) -142 NM_001330261 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 891.333 chr1 209627462 209628308 + 3.16667 NA intron (NM_001017402, intron 10 of 21) intron (NM_001017402, intron 10 of 21) -4375 NR_036213 100422894 NR_036213 ENSG00000283876 MIR4260 - microRNA 4260 ncRNA 313.5-13 chr19 43555089 43555383 + 3.16667 NA intron (NM_006297, intron 3 of 16) LTR50|LTR|ERVL 20342 NM_006297 7515 Hs.98493 NM_006297 ENSG00000073050 XRCC1 RCC|SCAR26 X-ray repair cross complementing 1 protein-coding 519.167-7 chr9 75077126 75077588 + 3.16667 NA intron (NM_001330679, intron 4 of 9) intron (NM_001330679, intron 4 of 9) 10798 NM_001330679 54981 Hs.494186 NM_017881 ENSG00000106733 NMRK1 C9orf95|NRK1|bA235O14.2 nicotinamide riboside kinase 1 protein-coding 719.833 chr14 51304811 51305281 + 3.16667 NA intron (NR_145423, intron 1 of 1) intron (NR_145423, intron 1 of 1) 23339 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 629.334-4 chr3 2447477 2447737 + 3.16667 NA intron (NM_175607, intron 3 of 24) (TGTA)n|Simple_repeat|Simple_repeat 208778 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 486.667-3 chr21 8994723 8994979 + 3.16667 NA Intergenic L1M5|LINE|L1 7234 NR_162105 113218501 NR_162105 MIR10396A - microRNA 10396a ncRNA 491.166 chr11 78715621 78716047 + 3.16667 NA intron (NM_001098816, intron 25 of 33) MIRc|SINE|MIR -140970 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 574.833-4 chr5 161774669 161774957 + 3.16667 NA Intergenic Intergenic -72378 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 539.667-4 chr3 143975544 143975965 + 3.16667 NA intron (NM_001134470, intron 1 of 2) L3|LINE|CR1 2673 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 849.501-2 chr17 60677325 60677758 + 3.16667 NA promoter-TSS (NM_001353146) promoter-TSS (NM_001353146) -310 NM_001353145 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 1265 chr14 65221925 65222882 + 3.16667 NA promoter-TSS (NR_103769) promoter-TSS (NR_103769) -56 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 1162 chr13 91017238 91017850 + 3.16667 NA Intergenic Intergenic 72073 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 602.834-2 chr2 108182181 108182940 + 3.16667 NA intron (NR_131251, intron 2 of 4) MER34A1|LTR|ERV1 35281 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 733.834 chr17 4903527 4903783 + 3.16667 NA promoter-TSS (NM_000080) promoter-TSS (NM_000080) -557 NM_000080 1145 Hs.654535 NM_000080 ENSG00000108556 CHRNE ACHRE|CMS1D|CMS1E|CMS2A|CMS4A|CMS4B|CMS4C|FCCMS|SCCMS cholinergic receptor nicotinic epsilon subunit protein-coding 517.167-4 chrX 101357013 101357306 + 3.16667 NA intron (NM_000061, intron 13 of 18) intron (NM_000061, intron 13 of 18) -8417 NM_001145951 1678 Hs.447877 NM_004085 ENSG00000126953 TIMM8A DDP|DDP1|DFN1|MTS|TIM8 translocase of inner mitochondrial membrane 8A protein-coding 745.499-2 chr15 69265182 69265805 + 3.16667 NA intron (NM_001324093, intron 5 of 5) intron (NM_001324093, intron 5 of 5) -33419 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 810.167 chr12 119780637 119781253 + 3.16667 NA intron (NM_007174, intron 13 of 46) intron (NM_007174, intron 13 of 46) -67221 NR_031589 100302274 NR_031589 ENSG00000283768 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 1399.83 chr15 70460134 70461252 + 3.16667 NA Intergenic MER20|DNA|hAT-Charlie 45235 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 1229.17 chr1 219812313 219813063 + 3.16667 NA Intergenic Intergenic 115963 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 710 chr18 3624667 3625083 + 3.16667 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 21138 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 385.667-11 chr7 46717207 46717384 + 3.16667 NA Intergenic Intergenic -20173 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 866 chr1 64137239 64137686 + 3.16667 NA exon (NM_001083592, exon 5 of 7) exon (NM_001083592, exon 5 of 7) -23671 NR_110665 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 1077.5 chr18 77748897 77749659 + 3.16667 NA Intergenic Intergenic 244449 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 537.833 chr18 74652153 74652659 + 3.16667 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 21443 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 412.833-5 chr6 9250729 9250993 + 3.16667 NA Intergenic Intergenic 598652 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 908.5 chr17 81860688 81861317 + 3.16667 NA promoter-TSS (NM_000918) promoter-TSS (NM_000918) -467 NM_000918 5034 Hs.464336 NM_000918 ENSG00000185624 P4HB CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB prolyl 4-hydroxylase subunit beta protein-coding 641.001-2 chr6 6676711 6677095 + 3.16667 NA Intergenic Intergenic -54077 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 662.166 chr4 77618390 77618933 + 3.16667 NA Intergenic Intergenic 106908 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 792-2 chr7 135281194 135281613 + 3.16667 NA Intergenic Intergenic 49424 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 706-3 chr13 27379819 27380191 + 3.16667 NA Intergenic Intergenic -44614 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 691.5 chr11 86193471 86194174 + 3.16667 NA Intergenic Intergenic -50562 NM_001330334 8726 Hs.503510 NM_003797 ENSG00000074266 EED COGIS|HEED|WAIT1 embryonic ectoderm development protein-coding 506.167 chr1 66239771 66240034 + 3.16667 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -92206 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 886.5 chr4 163550191 163550864 + 3.16667 NA intron (NM_017923, intron 2 of 3) intron (NM_017923, intron 2 of 3) 55837 NM_018352 55319 Hs.267446 NM_018352 ENSG00000198498 TMA16 C4orf43 translation machinery associated 16 homolog protein-coding 661.667 chr10 110226115 110226447 + 3.16667 NA exon (NM_005962, exon 1 of 6) exon (NM_005962, exon 1 of 6) 285 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 716 chr11 5123876 5124524 + 3.16667 NA Intergenic Intergenic 8442 NM_001005160 390054 Hs.546593 NM_001005160 ENSG00000171944 OR52A5 OR11-33 olfactory receptor family 52 subfamily A member 5 protein-coding 1289 chr19 42596489 42597598 + 3.16667 NA intron (NR_073180, intron 2 of 2) intron (NR_073180, intron 2 of 2) -2119 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 786.334 chr22 30108453 30109060 + 3.16667 NA intron (NM_001329457, intron 6 of 11) L2c|LINE|L2 28292 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 502.167 chr8 133942243 133942449 + 3.16667 NA Intergenic Intergenic 55850 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 398.334-8 chr8 72191854 72192044 + 3.16667 NA Intergenic Intergenic 59685 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 1126 chr15 94163639 94164427 + 3.16667 NA Intergenic MER104|DNA|TcMar-Tc2 -56095 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 417-7 chr7 90579341 90579510 + 3.16667 NA Intergenic Intergenic -16896 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 422.833-4 chr17 57850101 57850474 + 3.16667 NA promoter-TSS (NM_016070) promoter-TSS (NM_016070) -243 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 335 chr1 43526223 43526403 + 3.16667 NA intron (NM_001329137, intron 1 of 34) AluJb|SINE|Alu 276 NM_001329137 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 1001.5 chr19 28704714 28705305 + 3.16667 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 22685 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 820.833 chr1 67765864 67766639 + 3.16667 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) -66037 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 267.167-14 chr8 96333288 96333392 + 3.16667 NA intron (NM_014754, intron 12 of 12) intron (NM_014754, intron 12 of 12) 53308 NR_125829 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 894.834 chr1 231603784 231604513 + 3.16667 NA intron (NR_034037, intron 1 of 1) intron (NR_034037, intron 1 of 1) 7942 NR_034037 100287814 Hs.25555 NR_034037 ENSG00000229228 LINC00582 - long intergenic non-protein coding RNA 582 ncRNA 377-8 chr21 36976953 36977315 + 3.16667 NA intron (NM_001352515, intron 1 of 10) intron (NM_001352515, intron 1 of 10) 3763 NM_001352516 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 899.334-2 chr11 118930226 118930690 + 3.16667 NA Intergenic Intergenic 19750 NR_039713 100616376 NR_039713 ENSG00000264211 MIR4492 mir-4492 microRNA 4492 ncRNA 478.833-3 chr17 49315594 49316200 + 3.16667 NA intron (NR_135579, intron 3 of 7) intron (NR_135579, intron 3 of 7) -27443 NR_106745 102465137 NR_106745 ENSG00000273500 MIR6129 hsa-mir-6129 microRNA 6129 ncRNA 478.666 chr2 229780685 229781138 + 3.16667 NA intron (NM_001348330, intron 34 of 41) intron (NM_001348330, intron 34 of 41) -66356 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 1100.33 chr12 42372146 42372768 + 3.16667 NA intron (NM_001364830, intron 3 of 6) intron (NM_001364830, intron 3 of 6) 40659 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 633.666-2 chr22 44820530 44821108 + 3.16667 NA intron (NM_181335, intron 5 of 11) intron (NM_181335, intron 5 of 11) 68261 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 833.833 chr1 50368244 50368980 + 3.16667 NA Intergenic Intergenic 54831 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 1215.33-2 chr4 63717179 63718167 + 3.16667 NA Intergenic Intergenic 691777 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 564.167-4 chr6 25264182 25264489 + 3.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -2928 NR_110862 101928663 Hs.561600 NR_110862 LOC101928663 - uncharacterized LOC101928663 ncRNA 1184.5-2 chr8 64263882 64264627 + 3.16667 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 104304 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 683.832 chr1 209357016 209357663 + 3.16667 NA Intergenic Intergenic -14716 NR_146491 101929476 Hs.568721 NR_146491 LINC01698 - long intergenic non-protein coding RNA 1698 ncRNA 319.501 chr16 69311199 69311531 + 3.16667 NA promoter-TSS (NM_013245) promoter-TSS (NM_013245) 15 NM_013245 27183 Hs.128420 NM_013245 ENSG00000132612 VPS4A SKD1|SKD1A|SKD2|VPS4|VPS4-1 vacuolar protein sorting 4 homolog A protein-coding 755.667-5 chr4 124111640 124112467 + 3.16667 NA Intergenic Intergenic 337789 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 540.168 chr22 30763723 30764037 + 3.16667 NA promoter-TSS (NM_001282740) promoter-TSS (NM_001282740) -373 NM_001282740 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 915.001 chr20 35454793 35455375 + 3.16667 NA promoter-TSS (NR_031620) promoter-TSS (NR_031620) -335 NM_001319138 8200 Hs.1573 NM_000557 ENSG00000125965 GDF5 BDA1C|BMP-14|BMP14|CDMP1|LAP-4|LAP4|OS5|SYM1B|SYNS2 growth differentiation factor 5 protein-coding 496.001 chr17 55526313 55526609 + 3.16667 NA Intergenic Intergenic -104626 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 653-2 chrX 74382852 74383456 + 3.16667 NA Intergenic Intergenic -38339 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 660 chr17 7988840 7989375 + 3.16667 NA Intergenic Intergenic -13563 NM_000180 3000 Hs.592109 NM_000180 ENSG00000132518 GUCY2D CACD1|CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC guanylate cyclase 2D, retinal protein-coding 1712 chr5 35003146 35004180 + 3.16667 NA intron (NM_031900, intron 13 of 13) intron (NM_031900, intron 13 of 13) 44286 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 1195 chr15 97744863 97746028 + 3.16667 NA intron (NR_024173, intron 1 of 1) intron (NR_024173, intron 1 of 1) 128984 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 582.5-4 chr7 41916386 41916785 + 3.16667 NA Intergenic Intergenic -213495 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 558.667-2 chr2 181571016 181571437 + 3.16667 NA intron (NM_001160277, intron 2 of 12) intron (NM_001160277, intron 2 of 12) 85879 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 603.666-2 chr16 85612332 85612657 + 3.16667 NA promoter-TSS (NM_014615) promoter-TSS (NM_014615) -828 NM_014615 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 1174.33 chr10 15433267 15434458 + 3.16667 NA Intergenic Intergenic -62573 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 650-2 chr7 4103306 4103806 + 3.16667 NA intron (NM_152744, intron 22 of 44) intron (NM_152744, intron 22 of 44) -26129 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 346.167-3 chr12 71637802 71638069 + 3.16667 NA intron (NM_144982, intron 7 of 34) intron (NM_144982, intron 7 of 34) 25913 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 989.834 chr17 38982958 38983380 + 3.16667 NA Intergenic Intergenic -15766 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 796-3 chr19 51393945 51394546 + 3.16667 NA Intergenic Intergenic -3654 NM_001193623 147646 Hs.148344 NM_001193623 ENSG00000262874 C19orf84 - chromosome 19 open reading frame 84 protein-coding 464.334-2 chr2 20062751 20062974 + 3.16667 NA Intergenic Intergenic -11234 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 1299 chr11 74739652 74740408 + 3.16667 NA Intergenic Intergenic -8604 NM_015424 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 561.167 chr10 118374380 118374704 + 3.16667 NA Intergenic Intergenic 17434 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 715.667-2 chr20 50510007 50510469 + 3.16667 NA promoter-TSS (NM_001278618) promoter-TSS (NM_001278618) -83 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 1315.83 chrX 41253209 41254247 + 3.16667 NA Intergenic CpG -22011 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 1162.5-2 chr14 77315696 77316806 + 3.16667 NA intron (NM_013382, intron 1 of 20) HERVL40-int|LTR|ERVL 4631 NM_013382 29954 Hs.132989 NM_013382 ENSG00000009830 POMT2 LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2 protein O-mannosyltransferase 2 protein-coding 513 chr19 46487646 46488082 + 3.16667 NA intron (NM_001205281, intron 3 of 3) MER5A|DNA|hAT-Charlie 8003 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 572.334 chr16 70771303 70771582 + 3.16667 NA intron (NR_034083, intron 5 of 5) intron (NR_034083, intron 5 of 5) 16347 NR_034083 100130894 Hs.678899 NR_034083 ENSG00000214353 VAC14-AS1 - VAC14 antisense RNA 1 ncRNA 902.833-2 chr5 28647947 28648822 + 3.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR -278486 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 628.334 chr6 110682190 110682759 + 3.16667 NA intron (NM_001300963, intron 3 of 13) intron (NM_001300963, intron 3 of 13) -132147 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 654.834-2 chr2 164430403 164430799 + 3.16667 NA Intergenic Intergenic 137894 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 904.834 chr16 57576100 57576941 + 3.16667 NA 3' UTR (NM_001318481, exon 11 of 11) 3' UTR (NM_001318481, exon 11 of 11) 33877 NM_001304376 221188 Hs.187884 NM_153837 ENSG00000159618 ADGRG5 GPR114|PGR27 adhesion G protein-coupled receptor G5 protein-coding 486.167 chr10 15105008 15105254 + 3.16667 NA TTS (NM_001265601) TTS (NM_001265601) 7776 NM_001097590 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 895.334 chr11 113289723 113290350 + 3.16667 NA Intergenic MIRb|SINE|MIR -16135 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 627.5-3 chr6 104682843 104683290 + 3.16667 NA Intergenic Intergenic 176480 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 907.834 chr10 29120143 29120615 + 3.16667 NA Intergenic Intergenic -168691 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 379.667-2 chr1 43414604 43415026 + 3.16667 NA intron (NM_015284, intron 4 of 70) intron (NM_015284, intron 4 of 70) 24916 NM_015284 23334 Hs.643560 NM_015284 ENSG00000198198 SZT2 C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B SZT2 subunit of KICSTOR complex protein-coding 619.833 chr11 67374141 67374883 + 3.16667 NA promoter-TSS (NM_013246) promoter-TSS (NM_013246) -335 NM_001166212 23529 Hs.502977 NM_013246 ENSG00000175505 CLCF1 BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6 cardiotrophin like cytokine factor 1 protein-coding 685.167-2 chr8 70088670 70089191 + 3.16667 NA Intergenic Intergenic -17678 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 464.667-9 chr8 90373902 90374179 + 3.16667 NA intron (NR_051989, intron 3 of 3) L1MDb|LINE|L1 152552 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 702.001-2 chr17 3682919 3683539 + 3.16667 NA intron (NM_175080, intron 8 of 10) intron (NM_175080, intron 8 of 10) 12926 NM_001204520 5026 Hs.731607 NM_002561 ENSG00000083454 P2RX5 LRH-1|P2X5|P2X5R purinergic receptor P2X 5 protein-coding 1154 chr7 34133997 34134830 + 3.16667 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 228874 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 880.167 chr15 83248193 83248992 + 3.16667 NA Intergenic Intergenic 34865 NM_001301206 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 549-2 chr5 32329585 32329771 + 3.16667 NA Intergenic Intergenic -16739 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 512.833-5 chr5 156824805 156825211 + 3.16667 NA Intergenic Intergenic -25287 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 1379.33 chr2 201235981 201237009 + 3.16667 NA intron (NM_033355, intron 2 of 9) intron (NM_033355, intron 2 of 9) 3032 NM_033358 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 459.666-3 chr6 122033766 122034018 + 3.16667 NA Intergenic MIR3|SINE|MIR -365659 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 1036.67-4 chr8 81590796 81591854 + 3.16667 NA Intergenic L2a|LINE|L2 39952 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 1784.83 chr17 69608506 69609884 + 3.16667 NA intron (NR_109972, intron 2 of 4) intron (NR_109972, intron 2 of 4) 15208 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 740.833-2 chr8 29340142 29340828 + 3.16667 NA intron (NM_001394, intron 1 of 3) intron (NM_001394, intron 1 of 3) 8320 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 862.167 chr14 46048051 46048613 + 3.16667 NA Intergenic L1M1|LINE|L1 -15827 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 764.667-4 chr8 10547799 10548462 + 3.16667 NA intron (NM_001197020, intron 4 of 4) intron (NM_001197020, intron 4 of 4) 22598 NM_001197020 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 946.5-3 chr4 133146402 133147052 + 3.16667 NA intron (NR_125885, intron 2 of 8) intron (NR_125885, intron 2 of 8) 2389 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 581.667-5 chr7 25215584 25216090 + 3.16667 NA Intergenic Intergenic 12649 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 700.834-2 chr5 23720235 23720698 + 3.16667 NA Intergenic L2a|LINE|L2 212811 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 278.834-2 chr12 120581423 120581576 + 3.16667 NA promoter-TSS (NM_198202) promoter-TSS (NM_198202) -97 NM_015918 51367 Hs.279913 NM_015918 ENSG00000167272 POP5 HSPC004|RPP2|RPP20|hPop5 POP5 homolog, ribonuclease P/MRP subunit protein-coding 289.5-7 chr20 33720188 33720420 + 3.16667 NA promoter-TSS (NM_007238) promoter-TSS (NM_007238) 6 NM_007238 11264 Hs.654857 NM_007238 ENSG00000101417 PXMP4 PMP24 peroxisomal membrane protein 4 protein-coding 596.166 chr4 108683378 108683665 + 3.16667 NA Intergenic MIR3|SINE|MIR 32922 NM_001267818 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 348.834-4 chr7 46792135 46792317 + 3.16667 NA Intergenic L1M4b|LINE|L1 -95104 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 977.667 chr18 31555805 31556327 + 3.16667 NA non-coding (NR_045216, exon 1 of 6) non-coding (NR_045216, exon 1 of 6) 845 NR_045216 100652770 Hs.562766 NR_045216 ENSG00000264859 DSG2-AS1 - DSG2 antisense RNA 1 ncRNA 629.667 chr1 147496770 147497343 + 3.16667 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 20819 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 635.167-5 chr3 167941411 167941772 + 3.16667 NA Intergenic Intergenic 45643 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 604.333-2 chr1 40948925 40949450 + 3.16667 NA Intergenic Intergenic -30509 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 541.667 chr16 25276627 25276862 + 3.16667 NA Intergenic Intergenic -18899 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 1099.33 chr14 63174501 63175352 + 3.16667 NA Intergenic Intergenic -29517 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 868.5-2 chr9 98263728 98264355 + 3.16667 NA Intergenic Intergenic -8392 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 534.667-4 chr8 28490563 28490853 + 3.16667 NA promoter-TSS (NM_172366) promoter-TSS (NM_172366) -390 NM_001258211 157574 Hs.741522 NM_172366 ENSG00000214050 FBXO16 FBX16 F-box protein 16 protein-coding 1000.83 chr12 111313673 111314198 + 3.16667 NA intron (NM_015267, intron 16 of 21) intron (NM_015267, intron 16 of 21) 9793 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 884.834 chr19 42683893 42684571 + 3.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 56249 NM_021016 5671 Hs.654413 NM_021016 ENSG00000221826 PSG3 - pregnancy specific beta-1-glycoprotein 3 protein-coding 569.833-2 chr4 75848240 75848829 + 3.16667 NA Intergenic AluSx1|SINE|Alu 53918 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 1000.33-4 chr4 112099576 112100080 + 3.16667 NA Intergenic Intergenic -45626 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 1084.17 chr14 29536909 29537663 + 3.16667 NA Intergenic Intergenic 389810 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 799.501-2 chr16 31142301 31142827 + 3.16667 NA exon (NM_173502, exon 10 of 15) exon (NM_173502, exon 10 of 15) -6837 NM_002773 5652 Hs.75799 NM_002773 ENSG00000052344 PRSS8 CAP1|PROSTASIN serine protease 8 protein-coding 429.666 chr11 60485726 60486320 + 3.16667 NA Intergenic Intergenic -6755 NM_017716 54860 Hs.272789 NM_017716 ENSG00000071203 MS4A12 Ms4a10 membrane spanning 4-domains A12 protein-coding 368.834-3 chr14 75577573 75577920 + 3.16667 NA promoter-TSS (NM_017791) promoter-TSS (NM_017791) -874 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 516.834 chr17 75201871 75202140 + 3.16667 NA Intergenic (TTGTT)n|Simple_repeat|Simple_repeat -3431 NM_001330472 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 1279 chr19 58519227 58520167 + 3.16667 NA promoter-TSS (NM_001316978) promoter-TSS (NM_001316978) -95 NM_001316978 84878 Hs.515662 NM_032792 ENSG00000119574 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 716.167-3 chr14 22570239 22570928 + 3.16667 NA intron (NM_001344, intron 2 of 2) intron (NM_001344, intron 2 of 2) -13521 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 432.5-2 chr12 127677417 127678152 + 3 NA Intergenic Intergenic -22196 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 781.834 chr4 77385143 77386001 + 3 NA Intergenic Intergenic -126181 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 624-2 chr19 14348616 14349049 + 3 NA intron (NR_134908, intron 1 of 3) L2b|LINE|L2 15089 NR_134916 101928845 Hs.531617 NR_134916 ENSG00000267147 LINC01842 - long intergenic non-protein coding RNA 1842 ncRNA 963.333 chr16 81723339 81724010 + 3 NA Intergenic AluSx1|SINE|Alu -55617 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 865.667 chr1 83904987 83905960 + 3 NA intron (NM_001350215, intron 16 of 19) intron (NM_001350215, intron 16 of 19) -44477 NR_119375 101927587 Hs.621230 NR_119375 ENSG00000233008 LINC01725 - long intergenic non-protein coding RNA 1725 ncRNA 357.667-7 chr19 12141288 12141537 + 3 NA intron (NR_037802, intron 4 of 7) intron (NR_037802, intron 4 of 7) -1062 NM_001203250 7568 Hs.512823 NM_021143 ENSG00000132010 ZNF20 KOX13 zinc finger protein 20 protein-coding 422.167-2 chr17 42155047 42155277 + 3 NA promoter-TSS (NM_001252039) promoter-TSS (NM_001252039) -173 NM_201434 5878 Hs.650382 NM_004583 ENSG00000108774 RAB5C L1880|RAB5CL|RAB5L|RABL RAB5C, member RAS oncogene family protein-coding 551.833 chr19 30664920 30665178 + 3 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 292665 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 956.333-3 chr4 72325994 72326584 + 3 NA intron (NM_014243, intron 5 of 21) intron (NM_014243, intron 5 of 21) 242932 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 1098.67-2 chr7 83976005 83976796 + 3 NA intron (NM_006080, intron 15 of 16) intron (NM_006080, intron 15 of 16) 218389 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 735.833 chr1 162613416 162614105 + 3 NA Intergenic Intergenic -17103 NM_001354983 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 438.333-4 chr12 57007840 57008356 + 3 NA Intergenic Intergenic -1552 NM_014830 9880 Hs.591025 NM_014830 ENSG00000166860 ZBTB39 ZNF922 zinc finger and BTB domain containing 39 protein-coding 1193.83-2 chr4 52983425 52984236 + 3 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 121513 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 436.5-2 chr10 34385962 34386172 + 3 NA intron (NM_001184789, intron 7 of 22) intron (NM_001184789, intron 7 of 22) 429229 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 429-2 chr11 61628298 61628724 + 3 NA intron (NR_002775, intron 2 of 4) MIR|SINE|MIR 13475 NR_002775 113157 Hs.502733 NR_002775 ENSG00000243742 RPLP0P2 RPLP0L2|RPLP0_3_1146 ribosomal protein lateral stalk subunit P0 pseudogene 2 pseudo 635.667-5 chr8 57420473 57420946 + 3 NA Intergenic LTR43-int|LTR|ERV1 76922 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 757.333 chr2 209977416 209977882 + 3 NA intron (NM_032504, intron 57 of 63) intron (NM_032504, intron 57 of 63) -24916 NM_001278289 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 355.666 chr7 71775598 71775875 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -467966 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 989.501 chr4 49709431 49710172 + 3 NA Intergenic SAR|Satellite|Satellite 723159 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 741.166-2 chr21 34361591 34362162 + 3 NA Intergenic Intergenic -2148 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 1127.83 chr12 121793981 121794670 + 3 NA promoter-TSS (NM_019034) promoter-TSS (NM_019034) -637 NM_019034 54509 Hs.707579 NM_019034 ENSG00000139725 RHOF ARHF|RIF ras homolog family member F, filopodia associated protein-coding 520.666-2 chrX 27186868 27187115 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR 276350 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 795.5 chr14 83071839 83072427 + 3 NA Intergenic Intergenic 429501 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 450.833-3 chr5 7455358 7455633 + 3 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 59357 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 671.666-2 chr16 49556655 49557000 + 3 NA intron (NM_001271620, intron 5 of 7) intron (NM_001271620, intron 5 of 7) -38242 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 420.666-3 chr2 54206727 54206991 + 3 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 49370 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 956.5-2 chr8 70745268 70746074 + 3 NA Intergenic Intergenic 76332 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 514.5-4 chr5 31579571 31579893 + 3 NA Intergenic (ATAATT)n|Simple_repeat|Simple_repeat 47431 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 502.833-4 chr8 99286625 99286850 + 3 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 249993 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 670.333-2 chr7 85021246 85021650 + 3 NA intron (NM_152754, intron 11 of 16) intron (NM_152754, intron 11 of 16) 100483 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 1016.67-3 chr8 68021753 68022804 + 3 NA intron (NM_024870, intron 4 of 39) intron (NM_024870, intron 4 of 39) 70232 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 577.833-3 chr3 8663591 8663976 + 3 NA Intergenic Intergenic -11699 NM_015931 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog protein-coding 183.5-38 chr5 101363445 101363518 + 3 NA Intergenic Intergenic -460199 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 1389.83 chr3 105518656 105519532 + 3 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 152185 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 778.667 chr1 156892013 156892496 + 3 NA Intergenic MIRb|SINE|MIR -1464 NM_001353683 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 581.667-3 chr18 68894713 68895119 + 3 NA intron (NM_001093729, intron 7 of 9) intron (NM_001093729, intron 7 of 9) 96836 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 595.5 chr14 71142105 71142697 + 3 NA Intergenic Intergenic -178075 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 418-4 chr17 42600488 42600733 + 3 NA intron (NM_178126, intron 1 of 8) L1MC5|LINE|L1 8764 NM_178126 162427 Hs.632262 NM_178126 ENSG00000141699 RETREG3 FAM134C reticulophagy regulator family member 3 protein-coding 293.333 chr1 46223399 46223716 + 3 NA Intergenic Intergenic -3252 NM_001243766 55624 Hs.525134 NM_017739 ENSG00000085998 POMGNT1 GNTI.2|GnT I.2|LGMD2O|LGMDR15|MEB|MGAT1.2|RP76|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 594.667 chr10 48215242 48215699 + 3 NA intron (NM_001018071, intron 12 of 28) MIRb|SINE|MIR 36287 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 395.5 chr11 34366336 34367033 + 3 NA Intergenic Intergenic -8674 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 490.5-2 chr8 70610212 70610458 + 3 NA intron (NR_038881, intron 1 of 3) MER2|DNA|TcMar-Tigger 1758 NR_038881 286190 Hs.662204 NR_038881 ENSG00000246366 LACTB2-AS1 - LACTB2 antisense RNA 1 ncRNA 734.333-3 chr8 56925229 56925837 + 3 NA Intergenic Intergenic 68334 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 419.5-7 chr3 123258989 123259402 + 3 NA intron (NM_012430, intron 5 of 6) intron (NM_012430, intron 5 of 6) 57252 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 1040-2 chr13 52450585 52451432 + 3 NA promoter-TSS (NM_001282169) promoter-TSS (NM_001282169) -374 NM_016075 51028 Hs.109520 NM_016075 ENSG00000136100 VPS36 C13orf9|CGI-145|EAP45 vacuolar protein sorting 36 homolog protein-coding 1182-2 chr11 55942381 55943576 + 3 NA Intergenic Intergenic -6578 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 652.167 chr11 126480907 126481310 + 3 NA intron (NM_001301097, intron 4 of 15) L2a|LINE|L2 75021 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 1007.17-2 chr3 178385221 178385953 + 3 NA Intergenic Intergenic -33614 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 214-31 chr2 102113454 102113556 + 3 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) 8901 NM_001320986 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 307.834-2 chr1 178242097 178242256 + 3 NA intron (NM_170692, intron 1 of 17) L1MDb|LINE|L1 -99275 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 732.167 chr15 71591057 71591590 + 3 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 44087 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 394.833-2 chr2 25617770 25617955 + 3 NA intron (NM_033147, intron 4 of 19) AluSz6|SINE|Alu 32360 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 974.001-2 chr7 38222461 38223092 + 3 NA intron (NM_001363347, intron 7 of 8) intron (NM_001363347, intron 7 of 8) 44531 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 1131.83 chr6 70705933 70707095 + 3 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 37984 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 1010 chr1 17502199 17502862 + 3 NA Intergenic Intergenic -37168 NR_137287 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 538-3 chr4 32975751 32976121 + 3 NA Intergenic Intergenic 624898 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 450.5 chr12 754885 755135 + 3 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 2087 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 703.999 chr15 59174588 59175080 + 3 NA intron (NM_004998, intron 19 of 27) intron (NM_004998, intron 19 of 27) -3572 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 665.333 chr17 42806764 42807160 + 3 NA intron (NM_173478, intron 5 of 6) intron (NM_173478, intron 5 of 6) 8101 NM_173478 124817 Hs.12272 NM_173478 ENSG00000176563 CNTD1 CNTD|COSA1 cyclin N-terminal domain containing 1 protein-coding 234.167-20 chr5 1644999 1645266 + 3 NA Intergenic CpG -11127 NR_003713 728613 Hs.720393 NR_003713 LOC728613 - programmed cell death 6 pseudogene pseudo 416.333-4 chr15 94121078 94121278 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -13240 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 858 chr3 42830845 42831815 + 3 NA intron (NM_001296, intron 2 of 2) LTR41B|LTR|ERVL 21885 NM_001296 1238 Hs.146346 NM_001296 ENSG00000144648 ACKR2 CCBP2|CCR10|CCR9|CMKBR9|D6|hD6 atypical chemokine receptor 2 protein-coding 300.5-10 chr17 60547793 60548002 + 3 NA Intergenic L1MEf|LINE|L1 -16649 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 325.5-20 chr6 51236425 51236553 + 3 NA Intergenic Intergenic -385381 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 353.333-13 chr9 19102902 19103302 + 3 NA promoter-TSS (NM_017645) promoter-TSS (NM_017645) -198 NM_017645 54801 Hs.533468 NM_017645 ENSG00000147874 HAUS6 Dgt6|FAM29A HAUS augmin like complex subunit 6 protein-coding 656.334 chr3 69161358 69161754 + 3 NA Intergenic MIRb|SINE|MIR -38961 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 740.167 chr13 27374475 27375070 + 3 NA Intergenic Intergenic -49847 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 315.667-18 chr8 137022544 137022743 + 3 NA Intergenic Intergenic 390945 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1570.5 chr12 47741491 47742624 + 3 NA intron (NM_001098532, intron 17 of 26) L2a|LINE|L2 16341 NM_001098532 10411 Hs.8578 NM_006105 ENSG00000079337 RAPGEF3 CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910 Rap guanine nucleotide exchange factor 3 protein-coding 1304.5 chr10 103333816 103334775 + 3 NA intron (NM_032154, intron 3 of 6) L1MA9|LINE|L1 16845 NM_001011663 84108 Hs.335808 NM_032154 ENSG00000156374 PCGF6 MBLR|RNF134 polycomb group ring finger 6 protein-coding 717.666-2 chr5 143825270 143825895 + 3 NA Intergenic MIR3|SINE|MIR 13421 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 395.5-8 chr6 75266667 75267019 + 3 NA intron (NM_001143958, intron 1 of 5) intron (NM_001143958, intron 1 of 5) -16545 NM_001366292 1347 Hs.70312 NM_001865 ENSG00000112695 COX7A2 COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL cytochrome c oxidase subunit 7A2 protein-coding 409-10 chrX 65534813 65535001 + 3 NA promoter-TSS (NM_031206) promoter-TSS (NM_031206) -101 NM_001170649 81887 Hs.522675 NM_031206 ENSG00000001497 LAS1L Las1-like|WTS|dJ475B7.2 LAS1 like, ribosome biogenesis factor protein-coding 299.833-14 chr5 59380628 59380898 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -23793 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 961.333 chr16 87062461 87063099 + 3 NA non-coding (NR_126008, exon 3 of 3) non-coding (NR_126008, exon 3 of 3) 4996 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 515-5 chr2 49839710 49839901 + 3 NA Intergenic Intergenic 134398 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 759.833-2 chr6 44267673 44268161 + 3 NA Intergenic MIR1_Amn|SINE|MIR -2129 NM_004556 4794 Hs.458276 NM_004556 ENSG00000146232 NFKBIE IKBE NFKB inhibitor epsilon protein-coding 1026 chr3 130276126 130276644 + 3 NA Intergenic Intergenic 63565 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 1111 chr1 244796612 244797258 + 3 NA Intergenic Intergenic -38371 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 1639.5 chr5 79024747 79025612 + 3 NA intron (NM_013391, intron 13 of 15) intron (NM_013391, intron 13 of 15) -39221 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 425.334 chr13 19293663 19293869 + 3 NA intron (NR_027248, intron 13 of 20) intron (NR_027248, intron 13 of 20) 51207 NR_027248 100101938 Hs.129283 NR_027248 ANKRD26P3 LINC00414 ankyrin repeat domain 26 pseudogene 3 pseudo 1324.33-2 chr6 119741364 119742647 + 3 NA intron (NR_134600, intron 2 of 3) L2c|LINE|L2 192197 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 803.333 chr19 50142761 50143404 + 3 NA Intergenic Intergenic -2762 NR_024243 100170227 Hs.717309 NR_024243 SNAR-D - small NF90 (ILF3) associated RNA D snRNA 523.499 chr10 69788986 69789606 + 3 NA Intergenic Intergenic -12610 NM_001368895 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 591.5 chr1 90721372 90721822 + 3 NA Intergenic Intergenic -4295 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 344.666 chr16 22730249 22730416 + 3 NA Intergenic MER1B|DNA|hAT-Charlie -83830 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 576.5 chr12 52865314 52865743 + 3 NA Intergenic Intergenic -16534 NM_173352 196374 Hs.665267 NM_173352 ENSG00000170423 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 790-2 chr16 19555294 19556176 + 3 NA promoter-TSS (NR_158161) promoter-TSS (NR_158161) 32 NM_001365293 57020 Hs.654964 NM_020314 ENSG00000103544 VPS35L C16orf62 VPS35 endosomal protein sorting factor like protein-coding 238.333-31 chr4 44921284 44921371 + 3 NA Intergenic Intergenic -194693 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 731.834 chr12 57462489 57463070 + 3 NA intron (NM_001160045, intron 1 of 9) intron (NM_001160045, intron 1 of 9) 2628 NM_001167609 2735 Hs.632702 NM_005269 ENSG00000111087 GLI1 GLI|PAPA8|PPD1 GLI family zinc finger 1 protein-coding 350.5-2 chr14 69503902 69504158 + 3 NA intron (NM_001161498, intron 6 of 12) MIR|SINE|MIR 19302 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 763.666 chr9 133103145 133103642 + 3 NA intron (NM_001271775, intron 11 of 17) intron (NM_001271775, intron 11 of 17) 17847 NM_006266 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 573.001 chr7 140003995 140004706 + 3 NA intron (NM_001366537, intron 8 of 11) MER45B|DNA|hAT-Tip100 59371 NR_130117 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 404.167-3 chr1 210438742 210439061 + 3 NA intron (NM_001122834, intron 7 of 11) MIR|SINE|MIR 109535 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 1217.33 chr3 161423828 161424627 + 3 NA Intergenic Intergenic -2200 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 1366 chr3 35908159 35909199 + 3 NA Intergenic Intergenic 164203 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 387.333 chr12 14416790 14417212 + 3 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 31720 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 632 chr1 28246963 28247752 + 3 NA Intergenic CpG 11233 NM_016311 93974 Hs.744914 NM_016311 ENSG00000130770 ATP5IF1 ATPI|ATPIF1|ATPIP|IP ATP synthase inhibitory factor subunit 1 protein-coding 1145 chr9 10060178 10060902 + 3 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 261148 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 706.166-4 chr3 112642717 112643356 + 3 NA Intergenic Intergenic -1893 NM_199511 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 942.167 chr12 27015538 27016506 + 3 NA Intergenic Intergenic -1638 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 1436.33-2 chr1 115469658 115470378 + 3 NA Intergenic L2a|LINE|L2 -131782 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 1145.83 chr10 83871422 83872075 + 3 NA Intergenic Intergenic -194659 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 872.333 chr11 128172227 128172991 + 3 NA Intergenic Intergenic -36157 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 347.667-14 chr8 77387148 77387330 + 3 NA Intergenic Intergenic -63458 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 508.333 chr11 60762984 60763242 + 3 NA intron (NM_152717, intron 1 of 5) intron (NM_152717, intron 1 of 5) 6246 NM_001278242 219995 Hs.207465 NM_152717 ENSG00000166961 MS4A15 - membrane spanning 4-domains A15 protein-coding 629.334 chr10 112976265 112976652 + 3 NA intron (NM_001367943, intron 4 of 14) L2c|LINE|L2 26208 NM_001146285 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 812.333 chr12 12803329 12804106 + 3 NA Intergenic Intergenic -9629 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 693.499-2 chr10 73879813 73880193 + 3 NA Intergenic MIRb|SINE|MIR -5412 NM_001204492 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 667.499 chr1 84936358 84937107 + 3 NA intron (NM_153259, intron 11 of 13) intron (NM_153259, intron 11 of 13) -43526 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 1037-3 chr3 154334748 154335352 + 3 NA 3' UTR (NM_001038705, exon 4 of 4) 3' UTR (NM_001038705, exon 4 of 4) -10553 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 857.667 chr19 41785524 41786177 + 3 NA Intergenic Intergenic -10737 NM_001815 1084 Hs.11 NM_001815 ENSG00000170956 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding 440.667-4 chr14 52886906 52887134 + 3 NA intron (NM_006832, intron 4 of 14) intron (NM_006832, intron 4 of 14) 64030 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 673 chr10 63904865 63905214 + 3 NA Intergenic Intergenic -383149 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 590.167-3 chr16 25233489 25233937 + 3 NA Intergenic AluSx|SINE|Alu 16766 NM_001169 343 Hs.176658 NM_001169 ENSG00000103375 AQP8 AQP-8 aquaporin 8 protein-coding 833.833-2 chr8 31107349 31107933 + 3 NA intron (NM_000553, intron 18 of 34) intron (NM_000553, intron 18 of 34) -74285 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 430.5-5 chr3 174728010 174728264 + 3 NA Intergenic L1MC1|LINE|L1 -131197 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 403-3 chr16 67017917 67018174 + 3 NA Intergenic MER91C|DNA|hAT-Tip100 -11104 NM_001755 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor subunit beta protein-coding 583.833-2 chr4 1693337 1693790 + 3 NA 3' UTR (NM_001306074, exon 7 of 7) 3' UTR (NM_001306074, exon 7 of 7) -9250 NM_001174070 152877 Hs.143314 NM_001013622 ENSG00000174137 FAM53A DNTNP family with sequence similarity 53 member A protein-coding 420.5-9 chr5 102152931 102153575 + 3 NA Intergenic Intergenic 143031 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 677.333 chr6 149026482 149027025 + 3 NA TTS (NR_134599) TTS (NR_134599) 5908 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 649.667 chr11 9810395 9810637 + 3 NA non-coding (NR_036485, exon 3 of 3) non-coding (NR_036485, exon 3 of 3) -28626 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 651 chr1 63124624 63124951 + 3 NA Intergenic Intergenic -112316 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 769.167-2 chr2 105521041 105521617 + 3 NA Intergenic Intergenic -82816 NM_001318897 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 485-8 chr6 92231501 92231794 + 3 NA Intergenic Intergenic -541219 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 523.166-4 chr6 160138143 160138416 + 3 NA intron (NM_153187, intron 6 of 9) MIR|SINE|MIR 16448 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 402.5-8 chr5 38323000 38323451 + 3 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -32239 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 1301-2 chr3 143674166 143675147 + 3 NA intron (NM_173653, intron 5 of 15) intron (NM_173653, intron 5 of 15) 173812 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 685.834-3 chr3 102536630 102537114 + 3 NA Intergenic Intergenic 101857 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 614.334 chr13 102649303 102649746 + 3 NA intron (NM_001367947, intron 23 of 29) intron (NM_001367947, intron 23 of 29) 44997 NM_001010977 196541 Hs.508623 NM_001010977 ENSG00000139780 METTL21C C13orf39 methyltransferase like 21C protein-coding 825.167 chr4 125283678 125284297 + 3 NA Intergenic Intergenic -32425 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 829.999 chr8 30019292 30019998 + 3 NA Intergenic AluJo|SINE|Alu -62297 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 584 chr20 296735 297224 + 3 NA promoter-TSS (NM_033089) promoter-TSS (NM_033089) -591 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 1195.33-2 chr2 71100180 71100916 + 3 NA Intergenic Intergenic 29681 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 716.666 chr11 64449217 64449749 + 3 NA non-coding (NR_073177, exon 1 of 2) non-coding (NR_073177, exon 1 of 2) 426 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LINC02724 - long intergenic non-protein coding RNA 2724 ncRNA 386-8 chr5 38468319 38468503 + 3 NA Intergenic Intergenic 22865 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 477.667 chr18 3746663 3747072 + 3 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 98491 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 454.833-5 chr3 160006473 160006972 + 3 NA intron (NR_108088, intron 6 of 9) intron (NR_108088, intron 6 of 9) -13927 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 643.667-2 chr4 164748354 164748895 + 3 NA Intergenic Intergenic -5507 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 381.833-3 chr13 45500906 45501075 + 3 NA intron (NM_031431, intron 13 of 22) L1MC3|LINE|L1 36051 NM_031431 83548 Hs.507948 NM_031431 ENSG00000136152 COG3 SEC34 component of oligomeric golgi complex 3 protein-coding 855.5 chr9 31542516 31543087 + 3 NA Intergenic Intergenic -161311 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 414.833-6 chr2 174697348 174697663 + 3 NA Intergenic Intergenic -14606 NM_001077269 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 988.5-2 chr9 78439279 78439875 + 3 NA Intergenic Intergenic 142452 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 509.334 chr3 141737903 141738287 + 3 NA promoter-TSS (NM_014245) promoter-TSS (NM_014245) -114 NM_001201370 9616 Hs.134623 NM_014245 ENSG00000114125 RNF7 CKBBP1|ROC2|SAG|rbx2 ring finger protein 7 protein-coding 509.666-2 chr6 63272623 63272974 + 3 NA Intergenic Intergenic 47179 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 347.834-9 chr5 89555745 89555930 + 3 NA Intergenic Intergenic 460883 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 1083.33 chr1 147172345 147173189 + 3 NA promoter-TSS (NM_005399) promoter-TSS (NM_005399) 20 NM_001348451 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 600-4 chr20 63008945 63009464 + 3 NA promoter-TSS (NR_033370) promoter-TSS (NR_033370) -179 NR_033370 63930 Hs.640084 NR_033370 ENSG00000272259 LINC01749 - long intergenic non-protein coding RNA 1749 ncRNA 949.501 chr1 159211379 159212123 + 3 NA Intergenic Intergenic 6876 NM_001122951 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 632.167-4 chr8 135828463 135829145 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 371348 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 256.667-21 chr5 14999076 14999180 + 3 NA Intergenic MER94|DNA|hAT-Blackjack -127350 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 638.666 chr13 85827975 85828513 + 3 NA Intergenic Intergenic -28825 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 1192.67-2 chr18 12236942 12237623 + 3 NA Intergenic Intergenic -17079 NM_001318383 1149 Hs.249129 NM_001279 ENSG00000176194 CIDEA CIDE-A cell death inducing DFFA like effector a protein-coding 654.834 chr16 85416067 85416718 + 3 NA Intergenic Intergenic -110067 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 812.666 chr1 165113837 165114497 + 3 NA Intergenic Intergenic 242074 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 515.667 chr6 109527122 109527598 + 3 NA intron (NM_001145128, intron 29 of 40) intron (NM_001145128, intron 29 of 40) -44123 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 462.667-2 chr5 43313511 43313952 + 3 NA promoter-TSS (NM_001330663) promoter-TSS (NM_001330663) -319 NM_001324220 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 476.667-2 chr11 48109326 48109728 + 3 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) 12745 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 551.167-6 chr9 28102666 28103020 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -528977 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1235.5 chr17 21043207 21044026 + 3 NA promoter-TSS (NM_015276) promoter-TSS (NM_015276) -605 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 1138.67 chr2 137865702 137866530 + 3 NA Intergenic Intergenic 61816 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 618.834-3 chr2 166057515 166057963 + 3 NA intron (NR_148667, intron 4 of 28) intron (NR_148667, intron 4 of 28) -23792 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 997.832 chr1 147641734 147642450 + 3 NA TTS (NM_016361) TTS (NM_016361) 28432 NR_136636 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 397-3 chr12 113966119 113966544 + 3 NA promoter-TSS (NM_001146699) promoter-TSS (NM_001146699) -6 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 895.667-2 chr20 2386659 2387365 + 3 NA intron (NM_198994, intron 1 of 12) intron (NM_198994, intron 1 of 12) 6111 NM_198994 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 1080.33 chr15 93996709 93997473 + 3 NA intron (NR_120320, intron 3 of 8) intron (NR_120320, intron 3 of 8) 96390 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 497.167-3 chr5 135834567 135835056 + 3 NA non-coding (NR_146141, exon 1 of 9) non-coding (NR_146141, exon 1 of 9) 135 NM_145282 153328 Hs.412418 NM_145282 ENSG00000145832 SLC25A48 - solute carrier family 25 member 48 protein-coding 831 chr1 22105373 22105908 + 3 NA Intergenic MIRb|SINE|MIR 37457 NM_030761 54361 Hs.25766 NM_030761 ENSG00000162552 WNT4 SERKAL|WNT-4 Wnt family member 4 protein-coding 759.334-2 chr1 119948569 119949229 + 3 NA intron (NM_001200001, intron 16 of 21) intron (NM_001200001, intron 16 of 21) -52384 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 401.666-3 chr3 112097479 112097649 + 3 NA intron (NM_024616, intron 2 of 5) intron (NM_024616, intron 2 of 5) 11229 NM_024616 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 394.667-6 chr5 88377500 88377707 + 3 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) -14592 NR_105020 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 1294.33-2 chr6 142566029 142567388 + 3 NA intron (NR_027312, intron 1 of 2) intron (NR_027312, intron 1 of 2) 71128 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 408.333-6 chr5 124373627 124373832 + 3 NA intron (NR_125774, intron 4 of 5) MLT1N2|LTR|ERVL-MaLR 64791 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 413-3 chr11 62862670 62863100 + 3 NA intron (NM_001012664, intron 1 of 9) intron (NM_001012664, intron 1 of 9) 6776 NM_001012662 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 531.667-4 chr2 88038680 88038934 + 3 NA intron (NM_001304526, intron 1 of 3) THE1C|LTR|ERVL-MaLR 16976 NM_001304526 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 934.166 chr2 20446810 20447446 + 3 NA promoter-TSS (NM_004040) promoter-TSS (NM_004040) 54 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 309.5-13 chr4 44634604 44634812 + 3 NA intron (NM_182592, intron 3 of 5) L1ME4a|LINE|L1 16933 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 434.833-2 chr12 84503294 84503914 + 3 NA Intergenic MER50-int|LTR|ERV1 409195 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 547.333-3 chr8 77546867 77547305 + 3 NA Intergenic L1PA16|LINE|L1 96389 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 1439.83-2 chr4 139656320 139657455 + 3 NA Intergenic Intergenic -8881 NM_001204367 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 780-4 chr5 126539133 126539900 + 3 NA Intergenic Intergenic 55703 NM_001182 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 687.667 chr22 49767037 49767432 + 3 NA Intergenic L1M3f|LINE|L1 57097 NM_001349942 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 516.5-2 chr22 30485197 30485795 + 3 NA Intergenic Intergenic -3740 NR_001580 376844 Hs.534651 NR_001580 SDC4P - syndecan 4 pseudogene pseudo 850.667-3 chr3 50272820 50273322 + 3 NA promoter-TSS (NM_001290062) promoter-TSS (NM_001290062) -48 NR_110697 7869 Hs.82222 NM_004636 ENSG00000012171 SEMA3B LUCA-1|SEMA5|SEMAA|SemA|semaV semaphorin 3B protein-coding 1026.5-2 chr1 201792616 201793630 + 3 NA intron (NM_020443, intron 13 of 29) intron (NM_020443, intron 13 of 29) -15488 NR_031599 100302158 NR_031599 ENSG00000221028 MIR1231 MIRN1231|hsa-mir-1231 microRNA 1231 ncRNA 978.167 chr1 50080905 50081778 + 3 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) -22568 NM_001144776 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 1011.33 chr5 81425223 81426074 + 3 NA intron (NM_001345886, intron 15 of 15) intron (NM_001345886, intron 15 of 15) -31514 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 932.167 chr16 30814019 30814845 + 3 NA Intergenic CpG -27227 NM_001080417 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 749 chr17 74176775 74177202 + 3 NA Intergenic Intergenic -26690 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 1146.17-2 chr11 105862773 105863568 + 3 NA intron (NR_046356, intron 4 of 16) intron (NR_046356, intron 4 of 16) 159070 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 390.333-10 chr6 112986202 112986405 + 3 NA Intergenic Intergenic 447144 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 1114.67 chr22 46006136 46007651 + 3 NA non-coding (NR_027240, exon 1 of 1) non-coding (NR_027240, exon 1 of 1) 277 NR_027240 730668 Hs.640071 NR_027240 ENSG00000280424 LOC730668 - dynein heavy chain -like pseudogene pseudo 683.666-2 chr2 22239322 22239683 + 3 NA Intergenic Intergenic -296977 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 1081.67-2 chr7 28926633 28927512 + 3 NA Intergenic Intergenic 31258 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 1023.83 chr11 120510806 120511461 + 3 NA promoter-TSS (NM_014619) promoter-TSS (NM_014619) -613 NM_014619 2900 Hs.538738 NM_014619 ENSG00000149403 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate ionotropic receptor kainate type subunit 4 protein-coding 752-2 chr20 50981440 50981854 + 3 NA Intergenic Intergenic 22829 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 470.5-3 chr14 78836754 78837439 + 3 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -362886 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 1033.83 chr16 83215443 83216104 + 3 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -225475 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 688.166 chr10 53998053 53998541 + 3 NA intron (NM_001354411, intron 21 of 34) intron (NM_001354411, intron 21 of 34) -487933 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 436-4 chr9 111299495 111299755 + 3 NA Intergenic Intergenic -28411 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 1014.67-2 chr10 60963163 60963918 + 3 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) -18814 NM_001350911 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 1038.67 chr1 27045568 27046290 + 3 NA Intergenic Intergenic -33079 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 TENT5B FAM46B terminal nucleotidyltransferase 5B protein-coding 642.833-3 chr9 108761919 108762391 + 3 NA Intergenic MIRb|SINE|MIR 93831 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 896.999 chr8 137725643 137726481 + 3 NA Intergenic Intergenic -312474 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1105.17 chr15 26888871 26889932 + 3 NA intron (NM_001165037, intron 6 of 10) intron (NM_001165037, intron 6 of 10) 22275 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 1095.5-2 chr3 6799173 6800083 + 3 NA intron (NR_110125, intron 1 of 3) intron (NR_110125, intron 1 of 3) 5821 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 771.666 chr1 18883910 18884564 + 3 NA promoter-TSS (NR_039844) promoter-TSS (NR_039844) -962 NR_039844 100616120 NR_039844 ENSG00000265606 MIR4695 - microRNA 4695 ncRNA 1006.33 chr2 100984655 100985302 + 3 NA intron (NM_002518, intron 16 of 20) intron (NM_002518, intron 16 of 20) -7817 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 786.5 chr3 64533184 64533919 + 3 NA intron (NM_001318781, intron 36 of 38) MIRb|SINE|MIR -27795 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 678.167-2 chr2 24228473 24228919 + 3 NA intron (NM_001348182, intron 28 of 38) L1MEd|LINE|L1 53643 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 970.5 chr1 79353186 79353823 + 3 NA Intergenic Intergenic -346774 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 609.833 chr10 67697705 67698158 + 3 NA Intergenic Intergenic -1736 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 968.667 chr1 15033003 15033692 + 3 NA intron (NM_001370231, intron 3 of 8) L1MB8|LINE|L1 87428 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 1250.33 chr11 36701914 36703241 + 3 NA Intergenic Intergenic -104298 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 837.334 chr12 26884714 26885569 + 3 NA Intergenic LTR41B|LTR|ERVL -51947 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 635.666 chr1 222166988 222167454 + 3 NA Intergenic Intergenic -188701 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 588.167-3 chr5 14270195 14270616 + 3 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 127063 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 589.333 chr2 27320881 27321546 + 3 NA intron (NM_002437, intron 2 of 7) intron (NM_002437, intron 2 of 7) 1884 NM_002437 4358 Hs.75659 NM_002437 ENSG00000115204 MPV17 CMT2EE|MTDPS6|SYM1 mitochondrial inner membrane protein MPV17 protein-coding 1057 chr16 69395815 69396868 + 3 NA Intergenic Intergenic -10334 NM_005652 7014 Hs.63335 NM_005652 ENSG00000132604 TERF2 TRBF2|TRF2 telomeric repeat binding factor 2 protein-coding 1512 chr1 99481358 99482136 + 3 NA intron (NR_125951, intron 1 of 2) intron (NR_125951, intron 1 of 2) 6057 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 956.167 chr1 156608895 156609817 + 3 NA Intergenic L1ME4a|LINE|L1 -7869 NM_182679 54865 Hs.193832 NM_015590 ENSG00000160818 GPATCH4 GPATC4 G-patch domain containing 4 protein-coding 1000.33-3 chr3 99498956 99499835 + 3 NA Intergenic Intergenic -139199 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 815.333 chr2 101418979 101419629 + 3 NA intron (NM_001145664, intron 4 of 11) intron (NM_001145664, intron 4 of 11) -31801 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 1002.5 chr1 167066190 167067135 + 3 NA intron (NM_005814, intron 3 of 6) intron (NM_005814, intron 3 of 6) 23715 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 683.167 chr1 46528180 46528633 + 3 NA Intergenic Intergenic 7109 NM_001357063 105378696 NM_001357063 ENSG00000282881 TMEM275 - transmembrane protein 275 protein-coding 627.5-2 chr4 88033054 88033538 + 3 NA intron (NR_156488, intron 2 of 13) AluJb|SINE|Alu 25661 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 323.833-2 chr13 39942724 39943009 + 3 NA Intergenic Intergenic -238943 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 970.334 chr8 108918156 108918804 + 3 NA Intergenic Intergenic -130886 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 730.5 chr12 2057139 2057803 + 3 NA intron (NM_199460, intron 1 of 49).2 intron (NM_199460, intron 1 of 49).2 4186 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 809.501 chr17 70552559 70553314 + 3 NA Intergenic Intergenic 383401 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 401.499 chr1 186605675 186605904 + 3 NA Intergenic L1M1|LINE|L1 74634 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 396.833 chr1 23377539 23377876 + 3 NA Intergenic Intergenic -7871 NM_001077195 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 291.5-3 chr10 61831752 61831964 + 3 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat -69841 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 274-34 chr8 82658558 82658703 + 3 NA Intergenic Tigger9b|DNA|TcMar-Tigger -253474 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 313-17 chrX 10909302 10909458 + 3 NA Intergenic LTR101_Mam|LTR|ERVL -75697 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 599.833-3 chr2 233974414 233974904 + 3 NA intron (NM_024080, intron 17 of 25) intron (NM_024080, intron 17 of 25) 57286 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 451.167 chr2 45993369 45993745 + 3 NA intron (NM_005400, intron 6 of 14) intron (NM_005400, intron 6 of 14) -303850 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 1124.83-2 chr8 141173332 141173919 + 3 NA non-coding (NR_148197, exon 14 of 24) non-coding (NR_148197, exon 14 of 24) 45036 NM_001352891 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 703.999-2 chr17 39653843 39654326 + 3 NA intron (NM_001165938, intron 2 of 13) intron (NM_001165938, intron 2 of 13) -11262 NM_003673 8557 Hs.77628 NM_003673 ENSG00000173991 TCAP CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin titin-cap protein-coding 716.167-4 chr3 184417590 184418256 + 3 NA intron (NR_161198, intron 1 of 2) intron (NR_161198, intron 1 of 2) 16386 NR_161199 105374250 Hs.129464 NR_161198 LINC02054 - long intergenic non-protein coding RNA 2054 ncRNA 781.833-2 chr16 77306052 77306572 + 3 NA intron (NM_199355, intron 16 of 22) intron (NM_199355, intron 16 of 22) 106904 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 761.5-2 chr9 98315474 98315945 + 3 NA intron (NM_005458, intron 13 of 18) intron (NM_005458, intron 13 of 18) -60060 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 1100.5 chr3 172750457 172750948 + 3 NA promoter-TSS (NM_001349104) promoter-TSS (NM_001349104) 17 NM_001258316 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 933.667 chr2 195660266 195660781 + 3 NA intron (NM_020342, intron 1 of 9) intron (NM_020342, intron 1 of 9) 3297 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 1170.17 chr5 159106534 159107400 + 3 NA intron (NR_109890, intron 1 of 2) CpG 6484 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 243-19 chr6 1424217 1424533 + 3 NA Intergenic Intergenic -33964 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 418.999 chr2 38607662 38607977 + 3 NA Intergenic Intergenic -4783 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 587.833-3 chr5 154812029 154812501 + 3 NA intron (NM_001367714, intron 19 of 19) intron (NM_001367714, intron 19 of 19) -17193 NR_039667 100616306 NR_039667 ENSG00000263361 MIR378H - microRNA 378h ncRNA 424.166-3 chr2 26846020 26846834 + 3 NA Intergenic Intergenic -1705 NM_020134 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 584.667-3 chr8 48320909 48321433 + 3 NA Intergenic MER63B|DNA|hAT-Blackjack -230396 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 696.5 chr10 112460460 112460926 + 3 NA intron (NM_001365712, intron 2 of 8) intron (NM_001365712, intron 2 of 8) -13090 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 963.333-2 chr8 6840214 6841022 + 3 NA intron (NR_045217, intron 2 of 2) intron (NR_045217, intron 2 of 2) 5064 NR_045217 100652791 Hs.369771 NR_045217 ENSG00000245857 GS1-24F4.2 - uncharacterized LOC100652791 ncRNA 382.667-11 chr8 103714688 103714843 + 3 NA intron (NM_001348497, intron 2 of 22) intron (NM_001348497, intron 2 of 22) -104455 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 844.834-2 chr2 149597285 149597920 + 3 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -9827 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 704.334-2 chr4 67988192 67989006 + 3 NA Intergenic Intergenic 8840 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 970.501 chr14 56474402 56475147 + 3 NA Intergenic Intergenic -39557 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 337.167-4 chr11 130904557 130904818 + 3 NA TTS (NM_001347921) TTS (NM_001347921) 11800 NM_001347926 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 427.5-4 chr4 103009087 103009682 + 3 NA intron (NR_047515, intron 1 of 10) intron (NR_047515, intron 1 of 10) 10321 NR_047513 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 1149.5-2 chr7 145036172 145036821 + 3 NA Intergenic (AAGATTT)n|Simple_repeat|Simple_repeat -200443 NM_001350886 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 679.501 chr19 36170706 36171244 + 3 NA Intergenic Intergenic -18528 NM_001864 1346 Hs.421621 NM_001864 ENSG00000161281 COX7A1 COX7A|COX7AH|COX7AM cytochrome c oxidase subunit 7A1 protein-coding 797.333-2 chr3 176872514 176873155 + 3 NA Intergenic L1M1|LINE|L1 -55833 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 778.166 chr3 70358780 70359414 + 3 NA Intergenic Intergenic -46459 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 656-2 chr2 169451706 169452311 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie -27486 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 424.5-4 chr11 26227373 26227829 + 3 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 38478 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 783.501 chr3 27311661 27312491 + 3 NA intron (NM_152534, intron 9 of 38) intron (NM_152534, intron 9 of 38) 57307 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 531.834 chr15 46311732 46312365 + 3 NA Intergenic Intergenic 606853 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 575.667-2 chr16 2140550 2141005 + 3 NA Intergenic Intergenic -4648 NR_037467 100500916 NR_037467 ENSG00000264397 MIR3180-5 mir-3180-5 microRNA 3180-5 ncRNA 548.333-2 chr17 40354607 40354955 + 3 NA intron (NM_001024809, intron 6 of 7) MIR|SINE|MIR 9956 NM_152219 125111 Hs.444663 NM_152219 ENSG00000183153 GJD3 CX31.9|Cx30.2|GJA11|GJC1 gap junction protein delta 3 protein-coding 597.5-6 chr4 121112395 121112867 + 3 NA Intergenic Intergenic -40096 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 479 chr10 126121416 126121690 + 3 NA intron (NM_001288974, intron 5 of 18) (AT)n|Simple_repeat|Simple_repeat -148280 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 665.834 chr13 61410685 61411115 + 3 NA 3' UTR (NM_022843, exon 2 of 2) 3' UTR (NM_022843, exon 2 of 2) 4622 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 829.834 chrX 132292523 132293386 + 3 NA intron (NR_110410, intron 2 of 2) intron (NR_110410, intron 2 of 2) -73474 NR_073150 57826 Hs.119889 NM_021183 ENSG00000123728 RAP2C - RAP2C, member of RAS oncogene family protein-coding 896.167 chr10 117174754 117175515 + 3 NA Intergenic Intergenic -6079 NR_121650 101927704 Hs.342943 NR_121650 ENSG00000234474 MIR3663HG - MIR3663 host gene ncRNA 660.5-2 chr2 149573903 149574507 + 3 NA intron (NM_015702, intron 6 of 7) intron (NM_015702, intron 6 of 7) -13153 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 633-2 chr2 183390891 183391267 + 3 NA Intergenic L1MEg|LINE|L1 266636 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 535-3 chr2 61633857 61634121 + 3 NA Intergenic Intergenic -95633 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 313.5-17 chr3 38137153 38137274 + 3 NA promoter-TSS (NM_001607) promoter-TSS (NM_001607) 29 NM_001130410 30 Hs.643487 NM_001607 ENSG00000060971 ACAA1 ACAA|PTHIO|THIO acetyl-CoA acyltransferase 1 protein-coding 321-8 chr14 53052457 53052633 + 3 NA intron (NM_001160148, intron 11 of 12) intron (NM_001160148, intron 11 of 12) 100778 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 791.667 chr9 122124899 122125704 + 3 NA Intergenic Intergenic -5134 NR_039690 100616312 NR_039690 ENSG00000266583 MIR4478 mir-4478 microRNA 4478 ncRNA 343-3 chr10 76914975 76915127 + 3 NA intron (NM_001271519, intron 23 of 28) intron (NM_001271519, intron 23 of 28) 27007 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 872.667 chr5 2151007 2151724 + 3 NA Intergenic Intergenic 160836 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 578.833-2 chr3 168165884 168166100 + 3 NA Intergenic Intergenic -70068 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 406.5-8 chr7 24820868 24821089 + 3 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -63039 NM_004403 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 311.5-15 chr4 152846656 152846861 + 3 NA intron (NM_001025595, intron 2 of 8) intron (NM_001025595, intron 2 of 8) 66804 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 1018.33-2 chr9 5186200 5186884 + 3 NA promoter-TSS (NM_007179) promoter-TSS (NM_007179) -903 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 1156.33 chr12 32455081 32456243 + 3 NA intron (NM_001370298, intron 1 of 16) intron (NM_001370298, intron 1 of 16) -30310 NM_001330374 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 394.667-4 chr17 39979082 39979313 + 3 NA Intergenic Intergenic -1610 NM_002809 5709 Hs.12970 NM_002809 ENSG00000108344 PSMD3 P58|RPN3|S3|TSTA2 proteasome 26S subunit, non-ATPase 3 protein-coding 437-3 chr19 42035729 42036159 + 3 NA intron (NM_002088, intron 11 of 18) intron (NM_002088, intron 11 of 18) 29861 NM_002088 2901 Hs.367799 NM_002088 ENSG00000105737 GRIK5 EAA2|GRIK2|GluK5|KA2 glutamate ionotropic receptor kainate type subunit 5 protein-coding 750.167-4 chr6 37183720 37184114 + 3 NA Intergenic AluSq2|SINE|Alu 13765 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 727.667 chr4 38319062 38319618 + 3 NA Intergenic Intergenic -47574 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 866.667-2 chr8 24891544 24892207 + 3 NA Intergenic Intergenic -21886 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 464.333 chr1 200139560 200139859 + 3 NA intron (NM_205860, intron 7 of 7) L1PB|LINE|L1 96884 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 708.667 chr2 127649678 127650175 + 3 NA intron (NM_001161416, intron 2 of 2) intron (NM_001161416, intron 2 of 2) -1673 NM_001256542 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 705.666 chr12 47071309 47071693 + 3 NA Intergenic MIRb|SINE|MIR -8102 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 658.333-3 chr6 52504126 52504515 + 3 NA intron (NM_012288, intron 10 of 10) intron (NM_012288, intron 10 of 10) 72740 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 1364.17 chr18 80171162 80172080 + 3 NA non-coding (NR_028339, exon 3 of 3) non-coding (NR_028339, exon 3 of 3) 23697 NR_028339 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 930.5 chr1 202315485 202316040 + 3 NA intron (NM_001017403, intron 17 of 17) intron (NM_001017403, intron 17 of 17) 26174 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 1224.84 chr7 38369605 38370690 + 3 NA intron (NR_040085, intron 3 of 3) L1MD2|LINE|L1 28570 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 1154.17-3 chr6 148464518 148465421 + 3 NA intron (NM_001346506, intron 5 of 20) intron (NM_001346506, intron 5 of 20) -43530 NM_001346507 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 616.667-5 chr7 82234267 82234868 + 3 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 209210 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 486.334 chr11 95716053 95716410 + 3 NA Intergenic Intergenic 73551 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 440.167-11 chr7 113014816 113015239 + 3 NA Intergenic Intergenic -19384 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 497.5-2 chrX 119516212 119516442 + 3 NA Intergenic LTR16A|LTR|ERVL -47207 NR_028443 100303728 Hs.714405 NR_028443 ENSG00000224281 SLC25A5-AS1 - SLC25A5 antisense RNA 1 ncRNA 401.5-7 chr5 101634203 101634397 + 3 NA Intergenic L1MC4|LINE|L1 661984 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 672.001-3 chr6 44469763 44470220 + 3 NA Intergenic Intergenic 34350 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 929.334-2 chr11 65859349 65860222 + 3 NA promoter-TSS (NM_001350283) promoter-TSS (NM_001350283) -648 NM_001350283 80198 Hs.288798 NM_025128 ENSG00000172732 MUS81 SLX3 MUS81 structure-specific endonuclease subunit protein-coding 500.166 chr11 7688501 7688847 + 3 NA Intergenic Intergenic -14407 NM_001302826 51700 Hs.414362 NM_016229 ENSG00000166394 CYB5R2 B5R.2 cytochrome b5 reductase 2 protein-coding 542.334-2 chr7 128387660 128387928 + 3 NA intron (NR_148338, intron 2 of 2) intron (NR_148338, intron 2 of 2) 1112 NR_148339 107986845 Hs.592261 NR_148338 LOC107986845 - uncharacterized LOC107986845 ncRNA 364-13 chr7 35800898 35801102 + 3 NA promoter-TSS (NM_001242956) promoter-TSS (NM_001242956) 14 NM_001788 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 689.667-3 chr8 71810948 71811427 + 3 NA Intergenic Intergenic -31936 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 497-5 chr4 112029741 112030125 + 3 NA Intergenic Intergenic -115521 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 1092.67 chr11 86455611 86456514 + 3 NA intron (NM_001014811, intron 7 of 13) intron (NM_001014811, intron 7 of 13) 81175 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 856.667 chr22 38052210 38052731 + 3 NA Intergenic Intergenic -4785 NM_001039584 9463 Hs.180871 NM_012407 ENSG00000100151 PICK1 PICK|PRKCABP protein interacting with PRKCA 1 protein-coding 902.833 chr17 56960842 56961714 + 3 NA promoter-TSS (NM_004645) promoter-TSS (NM_004645) -228 NM_004645 8161 Hs.532795 NM_004645 ENSG00000121058 COIL CLN80|p80-coilin coilin protein-coding 595.501 chr10 109773811 109774277 + 3 NA Intergenic HAL1M8|LINE|L1 149202 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 1108 chr10 29735736 29736698 + 3 NA promoter-TSS (NM_001323600) promoter-TSS (NM_001323600) -293 NM_001323600 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 910.334 chr3 168864726 168865421 + 3 NA Intergenic Intergenic -36872 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 643-3 chr8 25065714 25066000 + 3 NA Intergenic Intergenic -108988 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 557.5 chr1 10377284 10377546 + 3 NA 3' UTR (NM_015074, exon 47 of 47) 3' UTR (NM_015074, exon 47 of 47) -21649 NM_002631 5226 Hs.464071 NM_002631 ENSG00000142657 PGD 6PGD phosphogluconate dehydrogenase protein-coding 377.166-2 chr2 48589316 48589565 + 3 NA intron (NM_172311, intron 2 of 10) intron (NM_172311, intron 2 of 10) 8853 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 1104 chr10 9209136 9209785 + 3 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -66153 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 693.666-4 chr5 172716443 172717470 + 3 NA Intergenic Intergenic -38547 NR_161233 101928093 Hs.646902 NR_161233 LOC101928093 - uncharacterized LOC101928093 ncRNA 871.833 chr1 40848130 40848927 + 3 NA Intergenic AluJr|SINE|Alu 13835 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 859.333 chr2 112726683 112727526 + 3 NA intron (NM_001350494, intron 15 of 16) intron (NM_001350494, intron 15 of 16) 5618 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 721-2 chr14 26473210 26473468 + 3 NA intron (NM_001366391, intron 4 of 5) intron (NM_001366391, intron 4 of 5) 80091 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 525.833-3 chr3 22685748 22686045 + 3 NA Intergenic MER20|DNA|hAT-Charlie 516682 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 694.833 chr2 68122350 68122987 + 3 NA Intergenic Intergenic 34859 NM_138458 116143 Hs.631877 NM_138458 ENSG00000243667 WDR92 - WD repeat domain 92 protein-coding 1050-2 chr15 69575537 69576519 + 3 NA Intergenic Intergenic 14308 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 1163.17-3 chr8 72018183 72019022 + 3 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 56982 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 541-5 chr4 86530516 86530867 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 11861 NR_039657 100616463 NR_039657 ENSG00000266515 MIR4452 - microRNA 4452 ncRNA 684.5 chr15 62306974 62307529 + 3 NA Intergenic Intergenic -2517 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 945-3 chr2 32553752 32554258 + 3 NA intron (NM_016252, intron 65 of 73) intron (NM_016252, intron 65 of 73) 20813 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 628.5 chr7 29877884 29878235 + 3 NA intron (NM_001080529, intron 3 of 8) intron (NM_001080529, intron 3 of 8) 71505 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 666.5 chr2 196768538 196768871 + 3 NA intron (NM_012086, intron 16 of 17) L1MC5|LINE|L1 30979 NM_001206774 9330 Hs.470996 NM_012086 ENSG00000119041 GTF3C3 TFIIIC102|TFIIICgamma|TFiiiC2-102 general transcription factor IIIC subunit 3 protein-coding 471.667-4 chr7 136393659 136393915 + 3 NA Intergenic L1MEc|LINE|L1 -416428 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 587.999 chr3 10758393 10758769 + 3 NA TTS (NR_027102) TTS (NR_027102) 5628 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 815.666 chr5 55691956 55692499 + 3 NA intron (NM_001258287, intron 1 of 13) MER113A|DNA|hAT-Charlie 826 NR_047649 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 715.499 chr8 105932808 105933286 + 3 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 127456 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 414.666-4 chr8 95611552 95611709 + 3 NA intron (NR_038205, intron 2 of 2) L1PA15|LINE|L1 336718 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 785.001 chr11 66834025 66834584 + 3 NA intron (NM_001302084, intron 12 of 14) intron (NM_001302084, intron 12 of 14) -9137 NM_001032279 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 792 chr12 7144389 7144931 + 3 NA intron (NM_014718, intron 12 of 17) intron (NM_014718, intron 12 of 17) 14289 NM_014718 9746 Hs.535378 NM_014718 ENSG00000139182 CLSTN3 CDHR14|CSTN3|alcbeta calsyntenin 3 protein-coding 659.333 chr16 29691911 29692208 + 3 NA intron (NM_001318249, intron 1 of 2) intron (NM_001318249, intron 1 of 2) 12879 NM_014298 23475 Hs.513484 NM_014298 ENSG00000103485 QPRT HEL-S-90n|QPRTase quinolinate phosphoribosyltransferase protein-coding 575 chr17 10317391 10317932 + 3 NA intron (NM_003802, intron 27 of 40) intron (NM_003802, intron 27 of 40) 55345 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 961.167-2 chr4 89254531 89255402 + 3 NA intron (NM_198281, intron 1 of 1) MER102a|DNA|hAT-Charlie 52834 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 397.5-2 chr1 182786648 182787115 + 3 NA Intergenic Intergenic -2568 NM_030769 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 644.666 chr1 226626254 226626687 + 3 NA Intergenic Intergenic 48598 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 ncRNA 1355.5 chr1 31394282 31395048 + 3 NA Intergenic Intergenic -15112 NM_001199038 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 473.333-4 chr18 7547755 7548046 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -19416 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 918 chr10 43105346 43105992 + 3 NA intron (NM_020630, intron 4 of 18) CpG 937 NM_001355216 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 671.667-2 chr17 7306942 7307392 + 3 NA promoter-TSS (NM_001143761) promoter-TSS (NM_001143761) 165 NM_001370420 1984 Hs.534314 NM_001970 ENSG00000132507 EIF5A EIF-5A|EIF5A1|eIF5AI eukaryotic translation initiation factor 5A protein-coding 1078.33-3 chr14 80055767 80056785 + 3 NA Intergenic Intergenic -155143 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 1105 chr1 68116280 68117224 + 3 NA intron (NR_040077, intron 6 of 9) L2a|LINE|L2 -65121 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 706.333-2 chr7 116809628 116809933 + 3 NA Intergenic Intergenic -52807 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 460.333-2 chr1 214628131 214628354 + 3 NA intron (NM_016343, intron 7 of 19) intron (NM_016343, intron 7 of 19) 25047 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 224.5-22 chr2 60343792 60343919 + 3 NA Intergenic L1MEc|LINE|L1 39181 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 876.166 chr15 88904522 88904997 + 3 NA intron (NM_001114614, intron 5 of 6) intron (NM_001114614, intron 5 of 6) 8409 NM_001310321 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 973.166 chr11 79493184 79494167 + 3 NA Intergenic Intergenic -52645 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 551.834-2 chr18 50287705 50287974 + 3 NA 5' UTR (NM_014593, exon 1 of 15) 5' UTR (NM_014593, exon 1 of 15) 483 NM_001101654 30827 Hs.180933 NM_014593 ENSG00000154832 CXXC1 2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP CXXC finger protein 1 protein-coding 694.833-3 chr7 102272142 102272788 + 3 NA intron (NM_001913, intron 14 of 22) intron (NM_001913, intron 14 of 22) -12676 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 1015.83-3 chr9 90914633 90915339 + 3 NA Intergenic Intergenic 87566 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 452.166-4 chr15 51650080 51650533 + 3 NA Intergenic Intergenic -27535 NM_001174116 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 554-3 chr17 57662899 57663273 + 3 NA intron (NM_138962, intron 11 of 13) intron (NM_138962, intron 11 of 13) -54674 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 437.667-2 chr2 79982656 79983064 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -116277 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 798 chr5 141591792 141592472 + 3 NA intron (NM_005219, intron 1 of 27) intron (NM_005219, intron 1 of 27) 26868 NM_001079812 1729 Hs.529451 NM_005219 ENSG00000131504 DIAPH1 DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1 diaphanous related formin 1 protein-coding 1698.83 chr14 50542637 50543676 + 3 NA intron (NM_001127713, intron 1 of 13) ERVL-E-int|LTR|ERVL 10074 NM_001127713 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 1023 chr3 414026 414621 + 3 NA Intergenic Intergenic -28528 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 991 chr1 31162556 31163106 + 3 NA Intergenic Intergenic 77056 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 471-5 chr22 41175782 41176009 + 3 NA intron (NM_001429, intron 29 of 30) intron (NM_001429, intron 29 of 30) 21606 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 372-13 chr7 38919124 38919264 + 3 NA Intergenic Intergenic -9994 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 491.167-2 chr20 49121475 49121656 + 3 NA intron (NM_004602, intron 8 of 13) intron (NM_004602, intron 8 of 13) 66805 NM_017452 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 1130.33-3 chr17 61836823 61837868 + 3 NA intron (NM_032043, intron 6 of 19) GA-rich|Low_complexity|Low_complexity 26214 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 442.834-4 chr3 123723707 123724032 + 3 NA intron (NM_001321309, intron 11 of 32) MER58B|DNA|hAT-Charlie 34225 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 609.833-3 chr19 14353343 14353642 + 3 NA intron (NR_134908, intron 1 of 3) intron (NR_134908, intron 1 of 3) 10498 NR_134908 105372288 Hs.628463 NR_134908 ENSG00000266913 LINC01841 - long intergenic non-protein coding RNA 1841 ncRNA 612-3 chr14 58401683 58402101 + 3 NA intron (NM_207377, intron 2 of 4) intron (NM_207377, intron 2 of 4) 5962 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 1588.33-2 chr10 98041126 98042167 + 3 NA Intergenic Intergenic -10818 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 702 chr13 52127702 52128166 + 3 NA promoter-TSS (NR_110306) promoter-TSS (NR_110306) -961 NR_110306 101929657 Hs.637461 NR_110306 ENSG00000273523 LOC101929657 - uncharacterized LOC101929657 ncRNA 963.834 chr21 29476197 29477089 + 3 NA Intergenic Intergenic -19404 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 569.667 chr18 64119651 64120077 + 3 NA intron (NR_033881, intron 1 of 9) intron (NR_033881, intron 1 of 9) 15773 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 878 chr18 12934606 12935298 + 3 NA Intergenic MLT2C2|LTR|ERVL -13032 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 780.001 chr2 26077210 26077686 + 3 NA intron (NM_016131, intron 1 of 5) intron (NM_016131, intron 1 of 5) 43364 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 621.167 chr1 169106299 169106563 + 3 NA promoter-TSS (NM_001677) promoter-TSS (NM_001677) -259 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 999.334 chr11 27183811 27184565 + 3 NA intron (NR_125767, intron 2 of 4) intron (NR_125767, intron 2 of 4) 34580 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 480.5-4 chr2 199985589 199985874 + 3 NA Intergenic Intergenic -30240 NM_001039693 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 871.333-2 chr21 43938861 43939296 + 3 NA intron (NM_001037553, intron 1 of 8) intron (NM_001037553, intron 1 of 8) 13680 NM_001037553 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 603.167 chr14 86055366 86055925 + 3 NA intron (NR_110155, intron 1 of 3) L2|LINE|L2 120967 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 826.166 chr1 209513479 209513921 + 3 NA Intergenic Intergenic -70014 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 419-4 chr14 52878877 52879173 + 3 NA intron (NM_006832, intron 6 of 14) intron (NM_006832, intron 6 of 14) 72025 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 973.666 chr1 36368773 36369861 + 3 NA intron (NM_032017, intron 1 of 11) intron (NM_032017, intron 1 of 11) 16607 NM_032017 83931 Hs.471768 NM_032017 ENSG00000196182 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 560.667-2 chr10 29496555 29496845 + 3 NA intron (NM_001323599, intron 19 of 38) intron (NM_001323599, intron 19 of 38) 48397 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 772.167 chr16 57084195 57084844 + 3 NA TTS (NM_032206) TTS (NM_032206) -8064 NM_152727 221184 Hs.339809 NM_152727 ENSG00000140848 CPNE2 COPN2|CPN2 copine 2 protein-coding 675.667-2 chr10 44975148 44975411 + 3 NA TTS (NM_007021) TTS (NM_007021) 3530 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 DEPP1 C10orf10|DEPP|FIG|Fseg DEPP1 autophagy regulator protein-coding 1090.67-2 chr11 66022363 66022991 + 3 NA intron (NM_053054, intron 2 of 11) CpG 3802 NM_053054 117144 Hs.189105 NM_053054 ENSG00000175294 CATSPER1 CATSPER|SPGF7 cation channel sperm associated 1 protein-coding 405-13 chr6 125974421 125974828 + 3 NA intron (NM_138571, intron 3 of 4) intron (NM_138571, intron 3 of 4) -11806 NR_146797 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 926.334 chr13 75876309 75876823 + 3 NA promoter-TSS (NR_126373) promoter-TSS (NR_126373) -320 NR_126373 104326189 Hs.671216 NR_126373 ENSG00000223458 LMO7DN-IT1 C13orf45-IT1|TCONS_00021569 LMO7DN intronic transcript 1 ncRNA 941.334 chr15 40104599 40105160 + 3 NA intron (NM_001003940, intron 3 of 4) intron (NM_001003940, intron 3 of 4) 1207 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 824.333 chr16 12455010 12455649 + 3 NA intron (NM_032167, intron 18 of 20) intron (NM_032167, intron 18 of 20) -264992 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 758-2 chr5 132063375 132064038 + 3 NA TTS (NM_000588) TTS (NM_000588) 3051 NM_000588 3562 Hs.694 NM_000588 ENSG00000164399 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 728.167 chr7 123154279 123154890 + 3 NA intron (NM_001324400, intron 7 of 17) HAL1|LINE|L1 45385 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 478.834-2 chr2 74203386 74203684 + 3 NA intron (NR_027405, intron 2 of 8) AluYc|SINE|Alu 4920 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 356.167-4 chr10 14478797 14479055 + 3 NA Intergenic Intergenic 42350 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 1173.33 chr17 65100010 65101389 + 3 NA promoter-TSS (NR_110801) promoter-TSS (NR_110801) -113 NR_110801 100507002 Hs.729924 NR_110801 LOC100507002 - uncharacterized LOC100507002 ncRNA 1171.83-3 chr3 24683756 24684428 + 3 NA Intergenic Intergenic -145231 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 1304.67 chr18 21194921 21196052 + 3 NA Intergenic Intergenic -46756 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 392.667-8 chr9 92293679 92293912 + 3 NA promoter-TSS (NM_002161) promoter-TSS (NM_002161) -39 NM_002161 3376 Hs.445403 NM_002161 ENSG00000196305 IARS GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785 isoleucyl-tRNA synthetase protein-coding 1367.67 chr3 32733179 32734200 + 3 NA intron (NR_046352, intron 10 of 16) intron (NR_046352, intron 10 of 16) 38148 NM_001256742 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 1029.5-3 chr3 187113153 187113742 + 3 NA Intergenic L1MC4|LINE|L1 26049 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 241.333-37 chr7 105401699 105401867 + 3 NA Intergenic LTR50|LTR|ERVL -12393 NM_001350746 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 451.833-3 chr7 774494 774912 + 3 NA intron (NR_075098, intron 10 of 12) CpG-25260 -40854 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 418.5-2 chr11 94968627 94968979 + 3 NA intron (NM_016403, intron 5 of 6) intron (NM_016403, intron 5 of 6) 4753 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 751.666-2 chr2 137947550 137948325 + 3 NA Intergenic Intergenic -16536 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 570.833-2 chr5 141325947 141326285 + 3 NA Intergenic Intergenic -4569 NM_031993 56114 Hs.368160 NM_018912 ENSG00000204956 PCDHGA1 PCDH-GAMMA-A1 protocadherin gamma subfamily A, 1 protein-coding 865.999 chr7 24819990 24820662 + 3 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -62387 NM_004403 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 952.667 chr1 220189358 220190138 + 3 NA exon (NM_012414, exon 17 of 35) exon (NM_012414, exon 17 of 35) 10871 NR_031705 100302234 NR_031705 ENSG00000281696 MIR664A MIR664|MIRN664|hsa-mir-664|hsa-mir-664a|mir-664a microRNA 664a ncRNA 766.5 chr10 56823684 56824557 + 3 NA Intergenic L1PB4|LINE|L1 -462847 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 372-15 chr8 89108873 89109071 + 3 NA Intergenic Intergenic 648739 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 387-8 chr19 11881195 11881467 + 3 NA Intergenic HERVI-int|LTR|ERV1 -6451 NM_001321163 7620 Hs.565280 NM_021915 ENSG00000198429 ZNF69 Cos5|hZNF3 zinc finger protein 69 protein-coding 462.5-6 chr4 6019899 6020247 + 3 NA Intergenic MER67C|LTR|ERV1 -1527 NM_001364690 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 1458 chr10 130110281 130111435 + 3 NA promoter-TSS (NR_034125) promoter-TSS (NR_034125) -28 NM_001355042 387723 Hs.127394 NM_001355042 ENSG00000237489 C10orf143 LINC00959 chromosome 10 open reading frame 143 protein-coding 587 chr2 213252048 213252442 + 3 NA Intergenic Intergenic 31964 NR_161186 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 350.833-5 chr4 6974332 6974651 + 3 NA intron (NM_020773, intron 3 of 13) L1MEf|LINE|L1 -12718 NM_001113363 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 1177.33-2 chr3 192815749 192817079 + 3 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) -88873 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 216.667-7 chr11 81231553 81231704 + 3 NA Intergenic Intergenic -468825 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 578.999 chr3 19046675 19046986 + 3 NA Intergenic MER57A-int|LTR|ERV1 -101680 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 746.5 chr1 205487969 205488504 + 3 NA Intergenic Intergenic -16433 NM_002596 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 685.167 chr3 155701803 155702106 + 3 NA intron (NM_001349252, intron 2 of 24) intron (NM_001349252, intron 2 of 24) 2310 NM_014996 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 445.333-7 chr18 76710015 76710224 + 3 NA Intergenic Tigger19b|DNA|TcMar-Tigger 20090 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 1435.17-2 chr5 115309287 115310404 + 3 NA Intergenic Intergenic -13191 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 627-2 chr2 181105310 181105659 + 3 NA Intergenic Intergenic -18353 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 321.5-11 chr2 133200961 133201163 + 3 NA intron (NM_207481, intron 5 of 17) MER44B|DNA|TcMar-Tigger -65133 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 1060.83 chr18 56575883 56576785 + 3 NA Intergenic Intergenic 62258 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 1042.17 chr21 33923784 33924432 + 3 NA Intergenic Intergenic -7014 NR_134559 100506334 Hs.532855 NM_207472 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 298.5-20 chr7 22154278 22154540 + 3 NA intron (NM_001367601, intron 7 of 13) intron (NM_001367601, intron 7 of 13) 39336 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 898.667 chr14 21940697 21941314 + 3 NA Intergenic Intergenic -269988 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 855-2 chr3 112979187 112979875 + 3 NA Intergenic Intergenic -4428 NM_138939 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 609.834-2 chr20 47464227 47464870 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -37339 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 448.333-4 chr4 161564376 161564774 + 3 NA intron (NM_001128428, intron 8 of 14) intron (NM_001128428, intron 8 of 14) -458158 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 648-3 chr15 61871488 61872155 + 3 NA intron (NM_001018088, intron 79 of 81) intron (NM_001018088, intron 79 of 81) 141903 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 865.333-2 chr11 96426769 96427349 + 3 NA Intergenic Intergenic 37046 NM_003772 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 486.667-4 chr5 112861126 112861457 + 3 NA promoter-TSS (NM_003135) promoter-TSS (NM_003135) 4 NM_003135 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 1069.17 chr17 74368026 74368770 + 3 NA intron (NM_001331076, intron 1 of 3) intron (NM_001331076, intron 1 of 3) 892 NM_001331077 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 648.834-3 chr20 34873926 34874308 + 3 NA promoter-TSS (NM_001242393) promoter-TSS (NM_001242393) -846 NM_001242393 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 476.834-3 chr3 36677623 36677886 + 3 NA Intergenic L1M4|LINE|L1 62107 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 498.667-2 chr17 48804816 48805427 + 3 NA intron (NM_001130918, intron 1 of 15) intron (NM_001130918, intron 1 of 15) -10797 NM_173623 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 532.334-3 chr2 56538816 56539065 + 3 NA Intergenic Intergenic -353170 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1318.5 chr1 26035394 26036169 + 3 NA 3' UTR (NM_004455, exon 11 of 11) 3' UTR (NM_004455, exon 11 of 11) 10337 NM_001004434 7780 Hs.143545 NM_032513 ENSG00000158014 SLC30A2 PP12488|TNZD|ZNT2|ZnT-2 solute carrier family 30 member 2 protein-coding 792.167 chr10 58299429 58299915 + 3 NA Intergenic Intergenic 30007 NR_158219 112268068 Hs.586671 NR_158219 LOC112268068 - uncharacterized LOC112268068 ncRNA 452-3 chr8 100947867 100948242 + 3 NA intron (NM_001135700, intron 2 of 5) intron (NM_001135700, intron 2 of 5) 2517 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 1156.33-4 chr7 123865271 123866372 + 3 NA intron (NM_012269, intron 2 of 4) THE1B|LTR|ERVL-MaLR 20652 NM_012269 23553 Hs.28673 NM_012269 ENSG00000106302 HYAL4 CSHY|HYAL-4 hyaluronidase 4 protein-coding 951.334 chr1 115595590 115596631 + 3 NA Intergenic Intergenic -45860 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 505.5-4 chr20 38243019 38243327 + 3 NA intron (NM_001029864, intron 2 of 13) MamGypLTR3a|LTR|Gypsy -17002 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 332.5 chr10 114270501 114270619 + 3 NA intron (NM_001272046, intron 5 of 13) MIRb|SINE|MIR 30946 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 1029 chr4 51895735 51896243 + 3 NA intron (NM_001040402, intron 7 of 10) intron (NM_001040402, intron 7 of 10) 52410 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 1176.17-3 chr12 23204757 23205839 + 3 NA Intergenic Intergenic 29662 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 339-7 chr2 34049334 34049523 + 3 NA intron (NR_126403, intron 4 of 5) L1MB7|LINE|L1 -17798 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 931.334-2 chr9 128635150 128636109 + 3 NA intron (NM_052844, intron 5 of 8) intron (NM_052844, intron 5 of 8) 21221 NM_052844 89891 Hs.495240 NM_052844 ENSG00000119333 WDR34 DIC5|FAP133|SRTD11|bA216B9.3 WD repeat domain 34 protein-coding 1097.33 chr16 85717683 85718293 + 3 NA intron (NR_161452, intron 2 of 4) intron (NR_161452, intron 2 of 4) 23712 NR_031731 100302261 NR_031731 ENSG00000283416 MIR1910 MIRN1910|hsa-mir-1910|mir-1910 microRNA 1910 ncRNA 969-2 chr6 141677522 141678060 + 3 NA Intergenic Intergenic 411008 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 396.167-9 chr5 110584301 110584485 + 3 NA intron (NM_001039763, intron 10 of 13) L1MB1|LINE|L1 -70478 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 1082.5 chr17 48610569 48611320 + 3 NA promoter-TSS (NM_004502) promoter-TSS (NM_004502) 73 NM_004502 3217 Hs.436181 NM_004502 ENSG00000260027 HOXB7 HHO.C1|HOX2|HOX2C|Hox-2.3 homeobox B7 protein-coding 849.166 chr11 100932441 100933075 + 3 NA intron (NM_001367945, intron 8 of 25) intron (NM_001367945, intron 8 of 25) -1516 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 634.333 chr1 34866502 34866925 + 3 NA intron (NM_001080418, intron 11 of 11) CpG -6964 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 546-2 chr8 51937721 51937972 + 3 NA Intergenic L1MB3|LINE|L1 -38660 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 309.834-10 chr5 74327649 74327813 + 3 NA intron (NR_105010, intron 2 of 2) intron (NR_105010, intron 2 of 2) 5245 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 360.333-6 chr20 50749503 50749764 + 3 NA intron (NM_032521, intron 2 of 2) intron (NM_032521, intron 2 of 2) 18053 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 626.667-2 chr21 18294994 18295497 + 3 NA intron (NM_002772, intron 19 of 24) intron (NM_002772, intron 19 of 24) 49370 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 939.166 chr16 69795727 69796885 + 3 NA intron (NM_001270455, intron 2 of 8) MER47B|DNA|TcMar-Tigger 33974 NM_007014 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 591.667 chr10 103416793 103417405 + 3 NA intron (NM_014976, intron 13 of 35) intron (NM_014976, intron 13 of 35) 20473 NM_014976 22984 Hs.239499 NM_014976 ENSG00000148843 PDCD11 ALG-4|ALG4|NFBP|RRP5 programmed cell death 11 protein-coding 717.334 chr18 8696363 8696991 + 3 NA intron (NR_120598, intron 1 of 1) intron (NR_120598, intron 1 of 1) 10944 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 1065.17 chr4 133154288 133154871 + 3 NA TTS (NM_020815) TTS (NM_020815) 5285 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 792.5 chr2 154623376 154624219 + 3 NA Intergenic Intergenic -74784 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 1990.34 chr4 21789367 21790815 + 3 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) 63097 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 839.667-2 chr7 74401214 74401678 + 3 NA intron (NM_032421, intron 14 of 15) intron (NM_032421, intron 14 of 15) -52460 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 400.333-8 chr8 85527116 85527317 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -62301 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 684.833 chr22 17830137 17830454 + 3 NA intron (NM_015241, intron 21 of 31) intron (NM_015241, intron 21 of 31) 53005 NR_103718 200298 Hs.517397 NR_103718 ENSG00000269220 LINC00528 C22orf37 long intergenic non-protein coding RNA 528 ncRNA 718.333-4 chr8 17602513 17603330 + 3 NA intron (NM_006207, intron 3 of 6) intron (NM_006207, intron 3 of 6) 26488 NM_006207 5157 Hs.458573 NM_006207 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet derived growth factor receptor like protein-coding 450.333 chr10 8381737 8381994 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -113560 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 373.333-13 chr8 98164588 98165021 + 3 NA Intergenic LTR16E2|LTR|ERVL 46964 NM_015029 10940 Hs.252828 NM_015029 ENSG00000104356 POP1 ANXD2 POP1 homolog, ribonuclease P/MRP subunit protein-coding 1225 chr9 137046117 137046934 + 3 NA promoter-TSS (NM_015392) promoter-TSS (NM_015392) -348 NM_015392 56654 Hs.719906 NM_015392 ENSG00000107281 NPDC1 CAB|CAB-|CAB-1|CAB1|NPDC-1 neural proliferation, differentiation and control 1 protein-coding 616.333-2 chr3 183884881 183885236 + 3 NA promoter-TSS (NR_136893) promoter-TSS (NR_136893) -178 NM_018622 55486 Hs.478469 NM_018622 ENSG00000175193 PARL PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1 presenilin associated rhomboid like protein-coding 742.833-2 chr4 36413789 36414477 + 3 NA Intergenic Intergenic 12295 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 742.666 chr12 52870273 52871043 + 3 NA Intergenic Intergenic -21664 NM_173352 196374 Hs.665267 NM_173352 ENSG00000170423 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 622.833-2 chr16 72093632 72094094 + 3 NA promoter-TSS (NM_001142317) promoter-TSS (NM_001142317) 6 NM_001142317 54957 Hs.134406 NM_017853 ENSG00000140830 TXNL4B DLP|Dim2 thioredoxin like 4B protein-coding 810 chr19 12825454 12825959 + 3 NA exon (NM_031429, exon 7 of 7) exon (NM_031429, exon 7 of 7) 4710 NM_001080997 83546 Hs.21162 NM_031429 ENSG00000132026 RTBDN - retbindin protein-coding 632.667 chr11 121063878 121064140 + 3 NA intron (NM_001363644, intron 8 of 8) intron (NM_001363644, intron 8 of 8) -38657 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 460.334-3 chr3 122392700 122393124 + 3 NA intron (NM_014367, intron 1 of 4) MIRb|SINE|MIR 8730 NM_014367 26355 Hs.584881 NM_014367 ENSG00000114023 FAM162A C3orf28|E2IG5|HGTD-P family with sequence similarity 162 member A protein-coding 651.666 chr4 69881266 69881790 + 3 NA Intergenic Intergenic -21383 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 368.666-5 chr3 54951515 54951827 + 3 NA intron (NM_001304389, intron 1 of 2) MIRb|SINE|MIR 15431 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 704.667-2 chr1 47314124 47314702 + 3 NA promoter-TSS (NM_001282937) promoter-TSS (NM_001282937) -266 NM_001282938 6491 Hs.525198 NM_003035 ENSG00000123473 STIL MCPH7|SIL STIL centriolar assembly protein protein-coding 618.334 chr1 66504006 66504380 + 3 NA Intergenic MER45A|DNA|hAT-Tip100 -29400 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 804.166 chr8 68394736 68395187 + 3 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -63470 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 446.666 chr17 66254917 66255262 + 3 NA Intergenic L1ME4b|LINE|L1 -25674 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 1199.67 chr1 213374090 213374796 + 3 NA Intergenic Intergenic 323202 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 406-2 chr10 109330380 109330545 + 3 NA Intergenic Intergenic 592784 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 1293.17-2 chr4 111282951 111283879 + 3 NA Intergenic Intergenic -422768 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 782.333 chr2 227471304 227472283 + 3 NA promoter-TSS (NM_001135189) promoter-TSS (NM_001135189) -339 NR_049888 100847081 NR_049888 ENSG00000284092 MIR5703 mir-5703 microRNA 5703 ncRNA 470.666-2 chr8 27351039 27351286 + 3 NA intron (NM_173175, intron 1 of 29) FRAM|SINE|Alu 25598 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 486.5-5 chr15 74771039 74771261 + 3 NA Intergenic Intergenic -10930 NM_001127190 1445 Hs.77793 NM_004383 ENSG00000103653 CSK - C-terminal Src kinase protein-coding 1445.5 chr14 33792632 33793524 + 3 NA intron (NM_001165893, intron 8 of 10) intron (NM_001165893, intron 8 of 10) 84141 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 644.833 chr19 9934003 9934439 + 3 NA intron (NM_058164, intron 1 of 5) intron (NM_058164, intron 1 of 5) 2294 NM_058164 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 1228 chr4 163332906 163333934 + 3 NA promoter-TSS (NM_000909) promoter-TSS (NM_000909) -824 NM_000909 4886 Hs.519057 NM_000909 ENSG00000164128 NPY1R NPY1-R|NPYR neuropeptide Y receptor Y1 protein-coding 990.666 chr17 64491171 64491874 + 3 NA intron (NM_007215, intron 3 of 7) intron (NM_007215, intron 3 of 7) 5532 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 741.167-3 chr14 24710180 24710827 + 3 NA Intergenic Intergenic -76313 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 1510.33 chr20 36199520 36200722 + 3 NA intron (NM_001258330, intron 14 of 20) intron (NM_001258330, intron 14 of 20) -36296 NM_015511 25980 Hs.11314 NM_015511 ENSG00000131043 AAR2 C20orf4|CGI-23 AAR2 splicing factor protein-coding 342-13 chr5 13038208 13038390 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -5413 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 819.167-2 chr19 39440187 39440658 + 3 NA Intergenic MER91B|DNA|hAT-Tip100 -4473 NM_001020 6217 Hs.397609 NM_001020 ENSG00000105193 RPS16 S16 ribosomal protein S16 protein-coding 465.333-2 chr12 9261343 9261621 + 3 NA non-coding (NR_137429, exon 7 of 7) non-coding (NR_137429, exon 7 of 7) 21479 NR_137431 100499405 Hs.182314 NR_036466 ENSG00000237248 LINC00987 - long intergenic non-protein coding RNA 987 ncRNA 729 chr4 77994358 77994730 + 3 NA Intergenic Intergenic -62779 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 687.333 chr4 38759522 38760079 + 3 NA Intergenic (T)n|Simple_repeat|Simple_repeat 23190 NM_030956 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 636.834 chr1 154324482 154324939 + 3 NA promoter-TSS (NM_001005855) promoter-TSS (NM_001005855) -815 NM_001370596 57198 Hs.435700 NM_020452 ENSG00000143515 ATP8B2 ATPID ATPase phospholipid transporting 8B2 protein-coding 796.666-2 chr19 10572533 10573005 + 3 NA TTS (NM_005498) TTS (NM_005498) -3790 NM_001800 1032 Hs.435051 NM_001800 ENSG00000129355 CDKN2D INK4D|p19|p19-INK4D cyclin dependent kinase inhibitor 2D protein-coding 755-4 chr6 75935070 75935588 + 3 NA intron (NM_001563, intron 14 of 16) intron (NM_001563, intron 14 of 16) 137333 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 924.334 chr20 52150348 52151257 + 3 NA TTS (NM_022088) TTS (NM_022088) 40977 NM_199426 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 745.833 chrX 83916238 83916941 + 3 NA Intergenic Intergenic 55443 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 402.499-3 chr3 81490598 81490867 + 3 NA intron (NM_000158, intron 15 of 15) intron (NM_000158, intron 15 of 15) 270913 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 307.5-7 chr12 3304486 3304672 + 3 NA intron (NR_148995, intron 5 of 11) intron (NR_148995, intron 5 of 11) 61543 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 696-2 chr16 20799419 20799948 + 3 NA intron (NM_080663, intron 7 of 10) intron (NM_080663, intron 7 of 10) 6789 NM_080663 112479 Hs.248437 NM_080663 ENSG00000196678 ERI2 EXOD1|ZGRF5 ERI1 exoribonuclease family member 2 protein-coding 367.5-5 chr5 52149988 52150187 + 3 NA Intergenic Intergenic 142056 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 601.167 chr1 97138202 97138721 + 3 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 42538 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 446.5 chr12 117151260 117151521 + 3 NA intron (NM_015002, intron 11 of 11) intron (NM_015002, intron 11 of 11) 39080 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 439.833-3 chr5 36414743 36415075 + 3 NA Intergenic Intergenic -113007 NM_145000 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 532.667-3 chr5 177309631 177309834 + 3 NA intron (NM_001142935, intron 4 of 5) MIRc|SINE|MIR 2166 NM_031300 83463 Hs.743332 NM_031300 ENSG00000213347 MXD3 BHLHC13|MAD3|MYX MAX dimerization protein 3 protein-coding 326.833-6 chr11 90459418 90459659 + 3 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 96319 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 680.167-2 chr12 33613837 33614111 + 3 NA Intergenic Intergenic -174155 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 561.833-2 chr2 236343466 236343766 + 3 NA intron (NM_001270584, intron 15 of 17) intron (NM_001270584, intron 15 of 17) -79271 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 308.333-4 chr12 24109393 24109687 + 3 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -102881 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 515.333-2 chr6 97497612 97498158 + 3 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 192299 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 264.334-5 chr17 4625912 4626450 + 3 NA Intergenic Intergenic 15497 NM_001140 246 Hs.73809 NM_001140 ENSG00000161905 ALOX15 12-LOX|15-LOX|15-LOX-1|LOG15 arachidonate 15-lipoxygenase protein-coding 467.167-2 chr3 133821718 133822295 + 3 NA TTS (NM_021203) TTS (NM_021203) 16191 NR_163491 58477 Hs.12152 NM_021203 ENSG00000144867 SRPRB APMCF1|SR-beta SRP receptor subunit beta protein-coding 409.333-4 chr2 33395810 33396258 + 3 NA intron (NM_206943, intron 32 of 33) intron (NM_206943, intron 32 of 33) -22482 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 1014.83 chr10 101141983 101142684 + 3 NA Intergenic Intergenic -1067 NR_130724 100038246 Hs.368784 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor ncRNA 441.833-3 chr14 46522625 46522916 + 3 NA Intergenic L1ME3A|LINE|L1 51411 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 321.833-4 chr12 6323197 6323540 + 3 NA intron (NM_001144857, intron 12 of 14) intron (NM_001144857, intron 12 of 14) 10717 NM_001144857 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 1242.17-2 chr19 48584150 48584885 + 3 NA intron (NM_177973, intron 2 of 6) LTR41C|LTR|ERVL 8781 NM_004605 6820 Hs.369331 NM_004605 ENSG00000088002 SULT2B1 ARCI14|HSST2 sulfotransferase family 2B member 1 protein-coding 959.333 chr15 60179564 60180291 + 3 NA Intergenic Intergenic 175616 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 441.667 chr10 84008681 84009302 + 3 NA Intergenic Charlie30a|DNA|hAT-Charlie -130518 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 625.666 chr8 20123670 20124273 + 3 NA Intergenic AluJb|SINE|Alu 59165 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 697.166 chr13 69856865 69857649 + 3 NA intron (NM_001286725, intron 4 of 9) L2c|LINE|L2 -249956 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 1243.83 chr1 196372738 196373413 + 3 NA intron (NR_146057, intron 13 of 26) intron (NR_146057, intron 13 of 26) 209406 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 782.167 chr17 32319458 32319966 + 3 NA intron (NM_001363836, intron 8 of 8) intron (NM_001363836, intron 8 of 8) 22461 NM_022344 64149 Hs.655257 NM_022344 ENSG00000108666 C17orf75 NJMU-R1|SRI2 chromosome 17 open reading frame 75 protein-coding 423.333-2 chr1 218524336 218524545 + 3 NA intron (NR_146760, intron 2 of 2) intron (NR_146760, intron 2 of 2) 14345 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 626.334 chr4 30781840 30782140 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 61621 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 317-11 chr4 143629502 143629686 + 3 NA intron (NM_001168235, intron 2 of 7) intron (NM_001168235, intron 2 of 7) 70122 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 GUSB pseudogene 5 pseudo 357.833-2 chr10 100947414 100947612 + 3 NA intron (NM_018121, intron 14 of 19) intron (NM_018121, intron 14 of 19) -25016 NM_017893 57715 Hs.591923 NM_017893 ENSG00000095539 SEMA4G - semaphorin 4G protein-coding 332.667-4 chr15 74635286 74635628 + 3 NA exon (NM_001351379, exon 6 of 7) exon (NM_001351379, exon 6 of 7) 20463 NM_001130028 1198 Hs.511790 NM_001292 ENSG00000179335 CLK3 PHCLK3|PHCLK3/152 CDC like kinase 3 protein-coding 1173-2 chr11 64887464 64888492 + 3 NA TTS (NR_133639) TTS (NR_133639) 3268 NR_029578 406967 NR_029578 ENSG00000283926 MIR192 MIRN192|miR-192|miRNA192 microRNA 192 ncRNA 408.167-4 chr22 28619083 28619337 + 3 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR 60655 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 904.833 chr4 93764615 93765256 + 3 NA intron (NM_001286838, intron 13 of 14) (CA)n|Simple_repeat|Simple_repeat -63818 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 630.833-2 chr11 117426000 117426618 + 3 NA Intergenic Intergenic 98455 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 637.5 chr4 155787245 155787727 + 3 NA intron (NM_001291951, intron 5 of 14) intron (NM_001291951, intron 5 of 14) 28465 NM_001291954 2983 Hs.77890 NM_000857 ENSG00000061918 GUCY1B1 GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3 guanylate cyclase 1 soluble subunit beta 1 protein-coding 794.166 chr10 93376075 93376610 + 3 NA intron (NM_013451, intron 22 of 53) intron (NM_013451, intron 22 of 53) 105992 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 703.833-3 chr4 20544644 20545312 + 3 NA intron (NM_001289135, intron 20 of 35) intron (NM_001289135, intron 20 of 35) 16703 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 427.334-3 chr12 6965226 6965520 + 3 NA TTS (NM_001267700) TTS (NM_001267700) 1276 NR_029682 406933 NR_029682 ENSG00000207708 MIR141 MIRN141|mir-141 microRNA 141 ncRNA 1237 chr2 236180458 236181793 + 3 NA Intergenic Intergenic -12739 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 672.667 chr11 108616665 108617371 + 3 NA Intergenic Intergenic -23250 NM_015065 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 435.667-4 chr4 73447868 73448231 + 3 NA intron (NM_001354717, intron 8 of 14) intron (NM_001354717, intron 8 of 14) 11828 NM_001134 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 523.5-3 chr20 34466640 34467034 + 3 NA TTS (NR_030374) TTS (NR_030374) 512 NR_030374 693229 NR_030374 ENSG00000207997 MIR644A MIR644|MIRN644|hsa-mir-644|hsa-mir-644a microRNA 644a ncRNA 734.5 chr1 117753841 117754720 + 3 NA Intergenic Intergenic 148232 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 696.499 chr10 80260638 80261257 + 3 NA Intergenic Intergenic 13189 NR_136612 100130698 Hs.447456 NR_136612 LOC100130698 - uncharacterized LOC100130698 ncRNA 319.667-8 chr3 32875891 32876052 + 3 NA intron (NM_001039111, intron 2 of 3) intron (NM_001039111, intron 2 of 3) 57974 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 884.833-2 chr8 85347991 85348717 + 3 NA intron (NM_001128830, intron 1 of 8) intron (NM_001128830, intron 1 of 8) -6640 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 759 chr6 51959732 51960255 + 3 NA exon (NM_170724, exon 36 of 61) exon (NM_170724, exon 36 of 61) 127620 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 751.667 chrX 75603759 75604267 + 3 NA Intergenic Intergenic -80511 NM_001146256 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 553.5 chr5 13479078 13479560 + 3 NA Intergenic L3b|LINE|CR1 -446433 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 674.5-3 chrX 49838354 49838665 + 3 NA Intergenic MIR|SINE|MIR 9206 NM_007003 9506 Hs.441038 NM_007003 ENSG00000101951 PAGE4 CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4 PAGE family member 4 protein-coding 565.833 chr15 67433485 67434127 + 3 NA intron (NR_040052, intron 3 of 5) intron (NR_040052, intron 3 of 5) 87167 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 578.667-4 chr9 134443290 134443647 + 3 NA Intergenic Intergenic 36908 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 432.333-3 chr14 52663677 52663849 + 3 NA intron (NM_014584, intron 8 of 15) intron (NM_014584, intron 8 of 15) 31795 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 838.501-2 chr4 63528335 63529161 + 3 NA Intergenic L1MC4|LINE|L1 880702 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 818.667 chr16 10509511 10510358 + 3 NA Intergenic Intergenic 18264 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 611.333-5 chrX 154917888 154918357 + 3 NA intron (NM_000132, intron 14 of 25) L1MA4|LINE|L1 -30664 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 978.667 chr5 8756318 8757056 + 3 NA Intergenic Intergenic -83045 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 626-2 chr2 199485912 199486453 + 3 NA Intergenic Intergenic -14916 NM_015265 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 840.167-2 chr11 12331242 12331991 + 3 NA intron (NM_032867, intron 6 of 8) MIRb|SINE|MIR 44716 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 1096.5-3 chr6 133921371 133922235 + 3 NA Intergenic Intergenic -30367 NM_001253676 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 711.5-2 chr5 163517298 163517626 + 3 NA intron (NM_013283, intron 5 of 6) intron (NM_013283, intron 5 of 6) 11843 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 555.667 chr19 5689133 5689673 + 3 NA promoter-TSS (NM_033643) promoter-TSS (NM_033643) -892 NM_015414 25873 Hs.408018 NM_015414 ENSG00000130255 RPL36 L36 ribosomal protein L36 protein-coding 284-16 chr2 125577286 125577470 + 3 NA Intergenic Intergenic 540607 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 295.333-10 chr17 32759461 32759609 + 3 NA TTS (NM_001303280) TTS (NM_001303280) 117589 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 581.833-3 chr3 126679367 126679708 + 3 NA Intergenic Intergenic 17456 NR_034158 255330 Hs.145435 NM_174935 ENSG00000198284 NUP210P1 C3orf46 nucleoporin 210 pseudogene 1 pseudo 664.667-2 chr1 162037079 162037364 + 3 NA Intergenic L2c|LINE|L2 -12756 NM_001347700 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 879.833-2 chr2 237277203 237277793 + 3 NA Intergenic L1PREC2|LINE|L1 136666 NM_057164 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 824-2 chr2 134118044 134118740 + 3 NA Intergenic Intergenic -1543 NM_001371457 1389 chr2 85300130 85301373 + 3 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 27238 NM_001368095 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 593.167-4 chr7 2760412 2760726 + 3 NA intron (NM_007353, intron 2 of 3) intron (NM_007353, intron 2 of 3) 2571 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 540.333-2 chr6 12893843 12894306 + 3 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) -63282 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 441.667-5 chr4 58267770 58268037 + 3 NA Intergenic Intergenic 268425 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 1057.83 chr4 52545216 52546037 + 3 NA Intergenic Intergenic 110913 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 1423.5 chr22 26756135 26757293 + 3 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 83871 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 274-36 chr8 96761268 96761373 + 3 NA intron (NM_016134, intron 1 of 7) intron (NM_016134, intron 1 of 7) 116078 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 340.833-8 chr3 43503055 43503299 + 3 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) 118749 NM_001346467 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 672.833 chr16 35207234 35208293 + 3 NA Intergenic CpG 12004 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 968.167 chr5 62443462 62443963 + 3 NA intron (NM_016338, intron 3 of 29) intron (NM_016338, intron 3 of 29) 24828 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 212.5-7 chr10 59809518 59809630 + 3 NA intron (NM_005436, intron 5 of 8) intron (NM_005436, intron 5 of 8) -56119 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 489.333-2 chr12 90646761 90647041 + 3 NA Intergenic Intergenic -271122 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 380.333-3 chr12 5331301 5331741 + 3 NA Intergenic L2c|LINE|L2 -88370 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 436.334 chr1 118145318 118145599 + 3 NA intron (NM_206996, intron 3 of 48) intron (NM_206996, intron 3 of 48) 39770 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 741.833 chr11 133064279 133064696 + 3 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -120719 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 549.334-4 chr5 106844387 106844764 + 3 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 166439 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 567.667 chr11 116219237 116219723 + 3 NA Intergenic Intergenic -419942 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 477.833-3 chr6 4008538 4008880 + 3 NA Intergenic Intergenic -12591 NR_146785 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 413-12 chr8 18798815 18799462 + 3 NA intron (NM_015310, intron 8 of 15) intron (NM_015310, intron 8 of 15) 9729 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 458.334 chr10 91251458 91251821 + 3 NA intron (NM_001256549, intron 6 of 9) intron (NM_001256549, intron 6 of 9) 30976 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 534.5-2 chr5 146182548 146182836 + 3 NA promoter-TSS (NM_001317964) promoter-TSS (NM_001317964) -42 NM_020117 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 536.833 chr1 151300819 151301108 + 3 NA intron (NM_001198773, intron 9 of 12) 7SLRNA|srpRNA|srpRNA 18664 NM_020832 57592 Hs.186756 NM_020832 ENSG00000143373 ZNF687 PDB6 zinc finger protein 687 protein-coding 671.5 chr3 133930301 133930748 + 3 NA promoter-TSS (NR_161373) promoter-TSS (NR_161373) -712 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 379-6 chr2 239138355 239138565 + 3 NA intron (NM_006037, intron 9 of 26) intron (NM_006037, intron 9 of 26) -52534 NR_039643 100616493 NR_039643 ENSG00000264810 MIR4441 - microRNA 4441 ncRNA 364.667-6 chr14 21748700 21749022 + 3 NA Intergenic Intergenic -77844 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 1306.17-2 chr6 3990765 3991421 + 3 NA Intergenic LTR36|LTR|ERV1 -30207 NR_146785 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 1047.67 chr14 87944628 87945568 + 3 NA intron (NM_000153, intron 14 of 16) intron (NM_000153, intron 14 of 16) 48084 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 853.167 chr2 30026565 30027304 + 3 NA Intergenic Intergenic -105348 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 816.834 chr4 55948176 55949174 + 3 NA promoter-TSS (NM_025009) promoter-TSS (NM_025009) -270 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 801.501 chr10 102713392 102714072 + 3 NA promoter-TSS (NR_146992) promoter-TSS (NR_146992) 665 NM_004311 403 Hs.182215 NM_004311 ENSG00000138175 ARL3 ARFL3|JBTS35|RP83 ADP ribosylation factor like GTPase 3 protein-coding 600-7 chr6 99905703 99906206 + 3 NA Intergenic Intergenic -88084 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 771.834-4 chr8 28593788 28594562 + 3 NA Intergenic Intergenic -88993 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 242.5-49 chr9 35111699 35111812 + 3 NA promoter-TSS (NM_001317991) promoter-TSS (NM_001317991) -303 NM_001317991 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 326.333-10 chr8 121304714 121304899 + 3 NA Intergenic Intergenic -334540 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 1401.67 chr5 18304967 18305917 + 3 NA Intergenic Intergenic 498168 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 689.833-2 chr11 30196449 30197041 + 3 NA Intergenic Intergenic -34269 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 619.333 chr15 44550100 44550569 + 3 NA intron (NM_001284336, intron 2 of 5) AluJr|SINE|Alu 13187 NM_003758 8669 Hs.404056 NM_003758 ENSG00000104131 EIF3J EIF3S1|eIF3-alpha|eIF3-p35 eukaryotic translation initiation factor 3 subunit J protein-coding 664.334 chr13 70622922 70623767 + 3 NA Intergenic Intergenic -391797 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 447.667-12 chrX 107777337 107777824 + 3 NA promoter-TSS (NM_001348372) promoter-TSS (NM_001348372) -153 NM_001348372 392517 Hs.522750 NM_001348372 ENSG00000170935 NCBP2L dJ820B18.1 nuclear cap binding protein subunit 2 like protein-coding 449-2 chr3 59857730 59858337 + 3 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -199536 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 559.167-3 chr12 116230563 116230980 + 3 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 46415 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 708.833-4 chr9 17116084 17116925 + 3 NA Intergenic Intergenic -18536 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 859.333-2 chr6 116531913 116532635 + 3 NA intron (NM_153036, intron 1 of 2) FLAM_C|SINE|Alu 3231 NM_153036 221301 Hs.350750 NM_153036 ENSG00000164451 CALHM4 C6orf78|FAM26D calcium homeostasis modulator family member 4 protein-coding 794.001 chr1 116020680 116021131 + 3 NA intron (NM_018420, intron 4 of 11) intron (NM_018420, intron 4 of 11) -43629 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 277.167-6 chr18 21485136 21485484 + 3 NA intron (NM_001142966, intron 17 of 32) intron (NM_001142966, intron 17 of 32) 115394 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 658.333-4 chrX 154715057 154715355 + 3 NA intron (NR_104114, intron 2 of 8) intron (NR_104114, intron 2 of 8) 35871 NM_001282283 139716 Hs.496982 NM_080612 ENSG00000160219 GAB3 - GRB2 associated binding protein 3 protein-coding 1274.33-2 chr3 192466944 192467719 + 3 NA intron (NM_004113, intron 2 of 5) MIR3|SINE|MIR -47691 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 486.666-2 chr11 4757424 4757663 + 3 NA Intergenic L1MB7|LINE|L1 12395 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 991.001 chr6 25556363 25557104 + 3 NA exon (NM_017640, exon 29 of 37) exon (NM_017640, exon 29 of 37) -95482 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 852.499 chr7 42876411 42876899 + 3 NA Intergenic Intergenic 35188 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 1517.17 chr2 43595573 43596741 + 3 NA promoter-TSS (NM_001271643) promoter-TSS (NM_001271643) -111 NM_022065 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 1005.17-3 chr2 210421776 210422558 + 3 NA intron (NR_110606, intron 1 of 4) intron (NR_110606, intron 1 of 4) 54538 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 740.167-2 chr2 157497743 157498262 + 3 NA Intergenic Intergenic -53913 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 697.5 chr18 74040424 74040933 + 3 NA Intergenic MER67D|LTR|ERV1 107156 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 554.833 chr10 17430437 17430972 + 3 NA intron (NM_001004470, intron 2 of 7) L1PB3|LINE|L1 23891 NM_001004470 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 649.5-5 chr6 125114248 125114685 + 3 NA Intergenic Intergenic -39307 NM_001003396 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 1007.83 chr3 157606447 157607142 + 3 NA Intergenic Intergenic 63450 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 893.667 chr12 10139920 10140565 + 3 NA Intergenic Intergenic -9973 NM_197947 64581 Hs.143929 NM_022570 ENSG00000172243 CLEC7A BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2 C-type lectin domain containing 7A protein-coding 1018.67 chr2 69375396 69376345 + 3 NA intron (NM_002056, intron 1 of 18) intron (NM_002056, intron 1 of 18) 11357 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 1351.33 chr18 76803245 76804153 + 3 NA intron (NR_040024, intron 2 of 2) intron (NR_040024, intron 2 of 2) 18596 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 824.833-2 chr7 136009665 136010090 + 3 NA Intergenic Intergenic -32518 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 864.168 chr1 156890033 156890681 + 3 NA Intergenic Intergenic -3361 NM_001353683 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 215.667-46 chrX 55343245 55343357 + 3 NA Intergenic L1PA17|LINE|L1 63213 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 329-4 chr17 40566532 40566772 + 3 NA Intergenic L1MB7|LINE|L1 -1180 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 610.667 chr15 98881799 98882034 + 3 NA intron (NM_000875, intron 2 of 20) L3|LINE|CR1 97490 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 780-2 chr3 50121500 50122245 + 3 NA intron (NR_135301, intron 3 of 3) intron (NR_135301, intron 3 of 3) -20884 NR_045388 100775107 Hs.439480 NR_045388 ENSG00000281691 RBM5-AS1 LUST RBM5 antisense RNA 1 ncRNA 236-7 chr12 121552730 121552863 + 3 NA intron (NM_001005366, intron 4 of 22) intron (NM_001005366, intron 4 of 22) 27450 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 956.5 chr15 50876796 50877348 + 3 NA Intergenic Intergenic -31611 NM_007347 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 subunit epsilon 1 protein-coding 648.666 chr8 105811613 105812038 + 3 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 248678 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 917.667 chr11 13955637 13956308 + 3 NA Intergenic Intergenic -6751 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 620.333-2 chr3 107393035 107393392 + 3 NA Intergenic L2c|LINE|L2 -11054 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 499.334-3 chr20 5126498 5127090 + 3 NA promoter-TSS (NM_002592) promoter-TSS (NM_002592) -172 NM_002592 5111 Hs.147433 NM_002592 ENSG00000132646 PCNA ATLD2 proliferating cell nuclear antigen protein-coding 853.834 chr6 145928892 145929678 + 3 NA intron (NM_001370328, intron 16 of 31) intron (NM_001370328, intron 16 of 31) 34812 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 571.666 chr11 64653040 64653501 + 3 NA intron (NM_138732, intron 10 of 19) intron (NM_138732, intron 10 of 19) -9725 NM_138734 9379 Hs.372938 NM_015080 ENSG00000110076 NRXN2 - neurexin 2 protein-coding 437.667-3 chr2 218847869 218848137 + 3 NA Intergenic MIR1_Amn|SINE|MIR -11802 NM_006522 7475 Hs.29764 NM_006522 ENSG00000115596 WNT6 - Wnt family member 6 protein-coding 573.334-4 chr2 34365067 34365450 + 3 NA Intergenic MIRc|SINE|MIR 298032 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 1009.33 chr17 44778812 44779660 + 3 NA exon (NM_002390, exon 26 of 27) exon (NM_002390, exon 26 of 27) 20248 NM_001318933 4185 Hs.6088 NM_002390 ENSG00000073670 ADAM11 MDC ADAM metallopeptidase domain 11 protein-coding 345-11 chr2 56305250 56305395 + 3 NA intron (NM_001348516, intron 2 of 2) MIR|SINE|MIR -119552 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 575.667 chr12 112411699 112412064 + 3 NA promoter-TSS (NM_001320142) promoter-TSS (NM_001320142) -439 NM_001320142 6128 Hs.528668 NM_000970 ENSG00000089009 RPL6 L6|SHUJUN-2|TAXREB107|TXREB1 ribosomal protein L6 protein-coding 895.667 chr10 112471797 112472471 + 3 NA intron (NM_001365712, intron 3 of 8) intron (NM_001365712, intron 3 of 8) -24531 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 420.334 chr1 68470579 68470805 + 3 NA Intergenic Intergenic -20738 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 529.333 chr10 101835764 101836152 + 3 NA intron (NM_173192, intron 1 of 8) MIR|SINE|MIR 3913 NM_173194 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 348.667-16 chr9 109816654 109816888 + 3 NA intron (NM_053016, intron 1 of 6) L2|LINE|L2 36573 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 1113.67 chr19 10423997 10424965 + 3 NA intron (NM_001111307, intron 1 of 14) CpG 3943 NM_001111307 5141 Hs.89901 NM_006202 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A protein-coding 473.833-2 chr7 98420982 98421364 + 3 NA Intergenic Intergenic -20083 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 950.5-3 chr4 6327230 6328038 + 3 NA intron (NM_001206994, intron 9 of 9) intron (NM_001206994, intron 9 of 9) 54234 NM_181876 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 285-6 chr13 55338958 55339066 + 3 NA Intergenic L1MA7|LINE|L1 164558 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 706.834 chrX 84302336 84302679 + 3 NA Intergenic L1MA1|LINE|L1 -76679 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 708.999 chr8 121811889 121812372 + 3 NA Intergenic Intergenic -170690 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 630.167-2 chr18 21956034 21956396 + 3 NA Intergenic L1MEf|LINE|L1 -124809 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 509.667-2 chr7 42831592 42831892 + 3 NA Intergenic Intergenic 80101 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 888.167 chr20 31503077 31503792 + 3 NA Intergenic AluSx|SINE|Alu -10976 NM_030789 81502 Hs.373741 NM_030789 ENSG00000101294 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1 histocompatibility minor 13 protein-coding 574.333-3 chrX 118603868 118604116 + 3 NA intron (NM_144658, intron 23 of 52) MER20|DNA|hAT-Charlie 108083 NM_144658 139818 Hs.368203 NM_144658 ENSG00000147251 DOCK11 ACG|ZIZ2|bB128O4.1 dedicator of cytokinesis 11 protein-coding 914 chr19 34345740 34346456 + 3 NA intron (NM_014686, intron 10 of 13) intron (NM_014686, intron 10 of 13) -18642 NM_001184722 2821 Hs.466471 NM_000175 ENSG00000105220 GPI AMF|GNPI|NLK|PGI|PHI|SA-36|SA36 glucose-6-phosphate isomerase protein-coding 201.333-9 chr10 116947244 116947409 + 3 NA intron (NM_001127211, intron 7 of 16) intron (NM_001127211, intron 7 of 16) 57861 NM_018330 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 280.833-14 chr5 174327290 174327520 + 3 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -8949 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 611.333-2 chr11 46006284 46006837 + 3 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 83904 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 514.167 chr10 18607514 18607920 + 3 NA intron (NM_182543, intron 6 of 10) MER5A|DNA|hAT-Charlie 43870 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 538.333 chr1 103788310 103788519 + 3 NA Intergenic Intergenic 38573 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 1466.5 chr2 99065812 99066836 + 3 NA intron (NR_146001, intron 14 of 18) intron (NR_146001, intron 14 of 18) 74856 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 696.834-2 chr3 32509935 32510364 + 3 NA Intergenic Intergenic -3760 NR_106753 102465247 NR_106753 ENSG00000276147 MIR548AY hsa-mir-548ay microRNA 548ay ncRNA 387-3 chr11 124867511 124868120 + 3 NA intron (NM_022370, intron 1 of 27) intron (NM_022370, intron 1 of 27) 2383 NM_022370 64221 Hs.435621 NM_022370 ENSG00000154134 ROBO3 HGPPS|HGPPS1|HGPS|RBIG1|RIG1 roundabout guidance receptor 3 protein-coding 870.999 chr1 94806043 94806575 + 3 NA intron (NR_160783, intron 1 of 3) L1M5|LINE|L1 13923 NR_160780 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 731.667-3 chr3 167379901 167380505 + 3 NA promoter-TSS (NM_024687) promoter-TSS (NM_024687) 80 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 413-7 chr2 128205871 128206089 + 3 NA Intergenic L1MEg|LINE|L1 112888 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 1039.5 chr12 8681566 8682463 + 3 NA intron (NR_123740, intron 1 of 8) MER21C|LTR|ERVL 337 NM_001352267 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 1012.17 chr10 9342425 9343308 + 3 NA Intergenic Intergenic -47273 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 460.833-2 chr18 6158202 6158448 + 3 NA intron (NM_001365769, intron 13 of 16) L2b|LINE|L2 -98419 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 650.333-3 chr4 41882564 41883189 + 3 NA promoter-TSS (NR_104143) promoter-TSS (NR_104143) -265 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 504.5 chr12 23385708 23385889 + 3 NA Intergenic L1ME3D|LINE|L1 198788 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 787.999 chr22 16783608 16784353 + 3 NA exon (NM_175878, exon 4 of 4) exon (NM_175878, exon 4 of 4) -35542 NR_134584 101929350 Hs.561087 NR_134584 ENSG00000235343 LINC01665 - long intergenic non-protein coding RNA 1665 ncRNA 390.167-6 chr22 29245646 29246052 + 3 NA intron (NM_001267895, intron 13 of 14) MIR3|SINE|MIR 22132 NR_138044 25807 Hs.106730 NM_012265 ENSG00000100263 RHBDD3 C22orf3|HS984G1A|PTAG rhomboid domain containing 3 protein-coding 789.501-2 chr2 76953648 76954186 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -32048 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 1078.83 chr1 86379806 86380676 + 3 NA intron (NM_001007022, intron 7 of 17) (TAAGAT)n|Simple_repeat|Simple_repeat 15820 NM_001366784 57489 Hs.149360 NM_020729 ENSG00000122417 ODF2L - outer dense fiber of sperm tails 2 like protein-coding 827.5-3 chr5 83430145 83431031 + 3 NA Intergenic Intergenic -41086 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 774.833-3 chr4 85370448 85371026 + 3 NA Intergenic MER20|DNA|hAT-Charlie -104413 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 683.5 chr2 204023956 204025154 + 3 NA Intergenic Intergenic 87807 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 896-2 chr9 4366849 4367369 + 3 NA Intergenic L2b|LINE|L2 -67041 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 858.167 chr3 100462660 100463331 + 3 NA Intergenic Intergenic -29624 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 1611.5 chr15 68559001 68560659 + 3 NA intron (NM_001324014, intron 2 of 12) CpG -19163 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 510-8 chr5 138331872 138332161 + 3 NA promoter-TSS (NR_146628) promoter-TSS (NR_146628) -89 NR_146628 100128966 Hs.666832 NR_146628 ENSG00000120709 LOC100128966 - uncharacterized LOC100128966 ncRNA 719.667-4 chr2 189094161 189094543 + 3 NA intron (NM_000393, intron 6 of 53) intron (NM_000393, intron 6 of 53) 38759 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 1358.17-3 chr2 60560657 60561668 + 3 NA Intergenic Intergenic -7508 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 1061.83-2 chr14 69584782 69585595 + 3 NA Intergenic Intergenic -10317 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 620-5 chr6 158766479 158766841 + 3 NA 3' UTR (NM_001111077, exon 14 of 14) 3' UTR (NM_001111077, exon 14 of 14) -1907 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 293-20 chr5 140786049 140786312 + 3 NA promoter-TSS (NM_018900) promoter-TSS (NM_018900) 44 NM_031410 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 859.167 chr1 244299379 244300193 + 3 NA Intergenic Intergenic -52849 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 920.168 chr5 71782825 71783441 + 3 NA Intergenic Intergenic 63858 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 1033.83-2 chr4 88218827 88219519 + 3 NA intron (NM_001348985, intron 1 of 16) intron (NM_001348985, intron 1 of 16) 12453 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 219-2 chr10 72274862 72274995 + 3 NA exon (NM_019058, exon 3 of 3) exon (NM_019058, exon 3 of 3) 1004 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 1235.33 chr7 23272982 23273723 + 3 NA intron (NM_001005340, intron 9 of 10) intron (NM_001005340, intron 9 of 10) -25987 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 653.334 chr1 28088354 28089010 + 3 NA promoter-TSS (NR_104214) promoter-TSS (NR_104214) -45 NR_104214 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 1335 chr12 6039562 6040600 + 3 NA TTS (NR_145989) TTS (NR_145989) 102 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 591-2 chr2 199596725 199596990 + 3 NA Intergenic Intergenic -11211 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 398.5 chr1 119279576 119279868 + 3 NA Intergenic Intergenic -48530 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 907.666 chr17 71085193 71085751 + 3 NA Intergenic (GTCAGAA)n|Simple_repeat|Simple_repeat 116707 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 641.834-2 chr17 49191726 49192064 + 3 NA Intergenic Intergenic 17486 NM_031498 2793 Hs.181781 NM_031498 ENSG00000167083 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 G protein subunit gamma transducin 2 protein-coding 959.834 chr7 22726265 22727336 + 3 NA promoter-TSS (NM_001318095) promoter-TSS (NM_001318095) -400 NM_001318095 3569 Hs.654458 NM_000600 ENSG00000136244 IL6 BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6 interleukin 6 protein-coding 457-3 chr6 61808961 61809171 + 3 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 234936 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 515-6 chr2 161004591 161004827 + 3 NA Intergenic Intergenic -132246 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 555-3 chr8 81151328 81151643 + 3 NA Intergenic Intergenic -39417 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 457.333-3 chr4 142840759 142840999 + 3 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 5656 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 965.833-3 chr2 70946625 70947417 + 3 NA intron (NM_001692, intron 2 of 13) intron (NM_001692, intron 2 of 13) 1590 NR_110273 101927750 Hs.676120 NR_110273 ENSG00000239322 ATP6V1B1-AS1 - ATP6V1B1 antisense RNA 1 ncRNA 884.334-2 chr9 131762203 131762861 + 3 NA Intergenic CpG -22588 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 405.667-2 chr12 57803263 57803747 + 3 NA TTS (NM_001172697) TTS (NM_001172697) 12564 NM_006576 10677 Hs.584854 NM_006576 ENSG00000135407 AVIL ADVIL|DOC6|p92 advillin protein-coding 782.5 chr2 217713472 217714586 + 3 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 42564 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 541.334 chr15 36705604 36705878 + 3 NA intron (NM_032499, intron 9 of 11) intron (NM_032499, intron 9 of 11) 110864 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 276.666-3 chr14 67187974 67188105 + 3 NA Intergenic Intergenic -1401 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 878.833 chr1 37434254 37434855 + 3 NA Intergenic Intergenic 39889 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 604.5 chr4 68176476 68176919 + 3 NA Intergenic Intergenic -5595 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 544.5-2 chr11 36744811 36745090 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -146671 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 648.166 chr1 102970456 102971076 + 3 NA intron (NM_001854, intron 36 of 66) AluSc8|SINE|Alu 137730 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 820.833-3 chr14 58107547 58108322 + 3 NA intron (NM_001001872, intron 4 of 7) intron (NM_001001872, intron 4 of 7) 44279 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 275.167-22 chr7 32163108 32163403 + 3 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -91819 NM_001322055 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 674.5-2 chr2 155368704 155369207 + 3 NA Intergenic Intergenic 670260 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 405.333-13 chr8 98557982 98558194 + 3 NA intron (NM_006281, intron 8 of 10) intron (NM_006281, intron 8 of 10) 131130 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 1176-2 chr7 21261503 21262197 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -166233 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 725.834 chr11 12224630 12225153 + 3 NA intron (NR_144420, intron 13 of 27) intron (NR_144420, intron 13 of 27) 61208 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 445 chr10 106189346 106189688 + 3 NA TTS (NR_134330) TTS (NR_134330) 49352 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 1249.83 chr5 160508250 160509005 + 3 NA Intergenic Intergenic 23275 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 831.833 chr8 137496055 137496629 + 3 NA Intergenic Intergenic -82754 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 867.333 chr3 192422756 192423259 + 3 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -13958 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 442.667-4 chr5 39403415 39403686 + 3 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 21430 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 503.334 chr1 27671965 27672412 + 3 NA promoter-TSS (NM_002038) promoter-TSS (NM_002038) 4 NM_022873 2537 Hs.523847 NM_002038 ENSG00000126709 IFI6 6-16|FAM14C|G1P3|IFI-6-16|IFI616 interferon alpha inducible protein 6 protein-coding 288.333-8 chr16 86057127 86057308 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger 138870 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 321-5 chr12 48232470 48232637 + 3 NA Intergenic L1M5|LINE|L1 -29261 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 752.334 chr3 17430787 17431499 + 3 NA intron (NM_014744, intron 3 of 21) intron (NM_014744, intron 3 of 21) 268877 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 234-3 chr1 119475955 119476052 + 3 NA Intergenic Intergenic -31200 NM_001328615 3283 Hs.364941 NM_000862 ENSG00000203857 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 357-2 chr10 29890808 29890980 + 3 NA Intergenic LTR37-int|LTR|ERV1 -153958 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 584.166 chr2 88627641 88628119 + 3 NA promoter-TSS (NR_135540) promoter-TSS (NR_135540) 51 NR_135540 101928403 Hs.434326 NR_135540 ENSG00000234028 EIF2AK3-DT - EIF2AK3 divergent transcript ncRNA 664-2 chr6 161393587 161394283 + 3 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -77042 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 192-11 chr13 71469673 71469759 + 3 NA intron (NM_080759, intron 10 of 10) MIR3|SINE|MIR 397476 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 1035 chr11 48307366 48308171 + 3 NA TTS (NM_001004725) TTS (NM_001004725) 1545 NM_001004725 256148 Hs.553657 NM_001004725 ENSG00000176555 OR4S1 OR11-100 olfactory receptor family 4 subfamily S member 1 protein-coding 503.167-3 chr5 89945843 89946058 + 3 NA Intergenic Intergenic 70770 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 507-4 chr14 71022011 71022371 + 3 NA intron (NM_014982, intron 12 of 35) intron (NM_014982, intron 12 of 35) 114732 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 741.667 chr5 18462351 18462646 + 3 NA Intergenic L1ME1|LINE|L1 655224 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 277.5-4 chr11 113690842 113690943 + 3 NA exon (NM_001288751, exon 10 of 13) exon (NM_001288751, exon 10 of 13) 15416 NM_001288750 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 952.833 chr1 211476007 211476614 + 3 NA TTS (NM_001164688) TTS (NM_001164688) 16607 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 1401.5 chr1 184691393 184692168 + 3 NA non-coding (NR_135118, exon 21 of 21) non-coding (NR_135118, exon 21 of 21) 63078 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 433 chr12 20645412 20645574 + 3 NA intron (NM_000921, intron 10 of 15) LTR101_Mam|LTR|ERVL -49862 NM_001145945 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 1018.67-2 chr2 75787280 75788188 + 3 NA Intergenic Intergenic -76819 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 807.5 chr18 30971391 30972040 + 3 NA Intergenic Intergenic 71027 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 1515.17-2 chr16 68528207 68529115 + 3 NA Intergenic MIRb|SINE|MIR -10552 NM_001305204 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 477-4 chr16 51745975 51746189 + 3 NA Intergenic MER92-int|LTR|ERV1 -16437 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 996.5 chr1 9495154 9495799 + 3 NA Intergenic CpG -43989 NM_032315 84275 Hs.568613 NM_032315 ENSG00000171612 SLC25A33 BMSC-MCP|PNC1 solute carrier family 25 member 33 protein-coding 1328.17-3 chr18 67217157 67218134 + 3 NA Intergenic Intergenic 136061 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 743.833 chr1 203870667 203871237 + 3 NA non-coding (NR_130746, exon 4 of 4) non-coding (NR_130746, exon 4 of 4) 9105 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 753 chr1 45303763 45304192 + 3 NA promoter-TSS (NR_024270) promoter-TSS (NR_024270) 67 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 808.167-2 chr6 39166356 39166818 + 3 NA Intergenic Intergenic -51401 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 435.166-3 chr2 101036510 101036927 + 3 NA intron (NM_001102426, intron 8 of 19) intron (NM_001102426, intron 8 of 19) 34429 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 1164.67 chr1 205977117 205977931 + 3 NA non-coding (NR_110984, exon 4 of 4) non-coding (NR_110984, exon 4 of 4) 16915 NM_177403 338382 Hs.534612 NM_177403 ENSG00000276600 RAB7B RAB7 RAB7B, member RAS oncogene family protein-coding 317-6 chr18 74551856 74552201 + 3 NA intron (NM_032649, intron 1 of 11) intron (NM_032649, intron 1 of 11) 17528 NM_032649 84735 Hs.400613 NM_032649 ENSG00000150656 CNDP1 CN1|CPGL2|HsT2308 carnosine dipeptidase 1 protein-coding 809.665 chr21 33127281 33127783 + 3 NA Intergenic Intergenic -3832 NR_109961 101928107 Hs.382669 NR_109961 ENSG00000226527 LOC101928107 - uncharacterized LOC101928107 ncRNA 468.167-3 chr8 17912757 17913234 + 3 NA Intergenic HERVK-int|LTR|ERVK -9862 NM_001315508 5108 Hs.491148 NM_006197 ENSG00000078674 PCM1 PTC4|RET/PCM-1 pericentriolar material 1 protein-coding 662-3 chr5 14370628 14371032 + 3 NA intron (NM_007118, intron 18 of 56) intron (NM_007118, intron 18 of 56) -93153 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 679.667-4 chr22 42473376 42474271 + 3 NA Intergenic MER65-int|LTR|ERV1 -26756 NR_027786 94009 Hs.360940 NM_170694 ENSG00000172250 SERHL BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1 serine hydrolase like (pseudogene) pseudo 1325.5 chr22 35154788 35155563 + 3 NA intron (NR_126356, intron 4 of 5) MER5A1|DNA|hAT-Charlie 75881 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 943.833 chr17 22694859 22695578 + 3 NA Intergenic Intergenic 172107 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 881.167-3 chr7 46352335 46352809 + 3 NA Intergenic Intergenic 344550 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 702.334 chr12 3777324 3777806 + 3 NA Intergenic Intergenic -24456 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 267.333-24 chr7 78531818 78531931 + 3 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 184632 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 415-6 chr4 56420198 56420456 + 3 NA intron (NR_156493, intron 1 of 10) Tigger4b|DNA|TcMar-Tigger 15288 NR_156493 5471 Hs.331420 NM_002703 ENSG00000128059 PPAT ATASE|GPAT|PRAT phosphoribosyl pyrophosphate amidotransferase protein-coding 746.667-2 chr9 86637231 86637631 + 3 NA Intergenic Intergenic -283021 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 459-2 chr11 24326818 24327012 + 3 NA Intergenic L1MC1|LINE|L1 -170138 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 233.334 chr2 14916405 14916499 + 3 NA Intergenic (TTTTC)n|Simple_repeat|Simple_repeat 283735 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 595.667-5 chr5 39716414 39716692 + 3 NA Intergenic Intergenic 196122 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 1192.67 chr10 44386674 44387268 + 3 NA Intergenic Intergenic -1874 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 1273.17 chr20 12924510 12925615 + 3 NA intron (NR_109868, intron 4 of 11) intron (NR_109868, intron 4 of 11) 11901 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 909.834-3 chr2 235593782 235594559 + 3 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -76249 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 591-3 chr4 70904936 70905311 + 3 NA intron (NM_173468, intron 1 of 5) intron (NM_173468, intron 1 of 5) 2754 NM_001244767 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 613.667-2 chrX 136694941 136695293 + 3 NA intron (NM_001306177, intron 8 of 20) intron (NM_001306177, intron 8 of 20) 46940 NM_000074 959 Hs.592244 NM_000074 ENSG00000102245 CD40LG CD154|CD40L|HIGM1|IGM|IMD3|T-BAM|TNFSF5|TRAP|gp39|hCD40L CD40 ligand protein-coding 926.5-2 chr10 131454238 131454670 + 3 NA Intergenic AluJb|SINE|Alu -142733 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 526.167-3 chr6 44387238 44387686 + 3 NA promoter-TSS (NM_001253) promoter-TSS (NM_001253) -244 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 832.999 chr12 63103138 63103696 + 3 NA Intergenic Intergenic 49393 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 796 chr1 171313783 171314208 + 3 NA promoter-TSS (NM_002022) promoter-TSS (NM_002022) -188 NM_002022 2329 Hs.386502 NM_002022 ENSG00000076258 FMO4 FMO2 flavin containing dimethylaniline monoxygenase 4 protein-coding 1194.67 chr19 46748101 46749134 + 3 NA 5' UTR (NM_024301, exon 3 of 4) 5' UTR (NM_024301, exon 3 of 4) -2167 NM_013403 29888 Hs.631590 NM_013403 ENSG00000090372 STRN4 PPP2R6C|ZIN|zinedin striatin 4 protein-coding 455.333-8 chr5 55324766 55325113 + 3 NA intron (NM_015360, intron 3 of 26) intron (NM_015360, intron 3 of 26) 16950 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 475.333 chr1 227235032 227235250 + 3 NA intron (NM_001366019, intron 2 of 36) intron (NM_001366019, intron 2 of 36) 83351 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 631-2 chr20 50980072 50980484 + 3 NA Intergenic Intergenic 21460 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 435.167-4 chr2 219029617 219029905 + 3 NA intron (NM_194302, intron 10 of 34) intron (NM_194302, intron 10 of 34) 11755 NM_001278296 255101 Hs.147762 NM_152389 ENSG00000181378 CFAP65 CCDC108 cilia and flagella associated protein 65 protein-coding 808.667-2 chr3 42547512 42548044 + 3 NA TTS (NM_032970) TTS (NM_032970) -15172 NR_046654 100874007 Hs.600642 NR_046654 VIPR1-AS1 - VIPR1 antisense RNA 1 ncRNA 602.667-5 chr5 108920073 108920455 + 3 NA intron (NR_146155, intron 10 of 19) intron (NR_146155, intron 10 of 19) -4342 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 499.334-4 chr4 73844127 73844340 + 3 NA Intergenic Intergenic 7555 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 884.166 chr10 31808903 31809856 + 3 NA intron (NM_001270696, intron 14 of 17) intron (NM_001270696, intron 14 of 17) 99547 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 626.333 chr16 53507812 53508141 + 3 NA Intergenic Intergenic -4672 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 450-4 chr11 61897598 61898031 + 3 NA 3' UTR (NM_001271686, exon 9 of 9) 3' UTR (NM_001271686, exon 9 of 9) -6269 NM_021727 3995 Hs.21765 NM_021727 ENSG00000221968 FADS3 CYB5RP|LLCDL3 fatty acid desaturase 3 protein-coding 947.166 chr1 64242969 64243453 + 3 NA intron (NM_001366232, intron 8 of 9) intron (NM_001366232, intron 8 of 9) 39588 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 790 chr12 37672491 37673079 + 3 NA Intergenic ALR/Alpha|Satellite|centr -643989 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 444.833-6 chr6 81241719 81242301 + 3 NA Intergenic MIR|SINE|MIR 510671 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 900.833 chr1 233364466 233365085 + 3 NA intron (NM_032435, intron 5 of 9) intron (NM_032435, intron 5 of 9) 37051 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 673.833-3 chr6 142850805 142851136 + 3 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 94206 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 746.334 chr17 40075289 40075954 + 3 NA intron (NM_001190919, intron 2 of 9) intron (NM_001190919, intron 2 of 9) 12656 NM_003250 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor alpha protein-coding 993.5-2 chr4 37802200 37803013 + 3 NA Intergenic Intergenic -24080 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 745-2 chr6 53725840 53726375 + 3 NA Intergenic Intergenic -60351 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 886.166 chr11 82701573 82702290 + 3 NA Intergenic Intergenic 31933 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 634.666 chr6 145861520 145861770 + 3 NA intron (NR_038246, intron 2 of 2) L1MA9|LINE|L1 46769 NR_038245 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 601.833 chr22 28242315 28242653 + 3 NA intron (NM_001145418, intron 5 of 22) Tigger13a|DNA|TcMar-Tigger -217385 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 706.833-2 chr2 115166141 115166860 + 3 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 4345 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 655.666 chr6 42338573 42339264 + 3 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) 113133 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 810.333-3 chr2 16552814 16553497 + 3 NA intron (NM_030797, intron 11 of 11) intron (NM_030797, intron 11 of 11) 112679 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 890.167 chr1 84122884 84123404 + 3 NA intron (NM_002731, intron 1 of 9) intron (NM_002731, intron 1 of 9) -21127 NM_001300916 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 825 chr1 9874718 9875352 + 3 NA intron (NM_020248, intron 3 of 5) intron (NM_020248, intron 3 of 5) 35234 NM_001012329 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 283.5-6 chr17 59913277 59913405 + 3 NA intron (NM_001272042, intron 3 of 13) intron (NM_001272042, intron 3 of 13) 20220 NR_161458 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 451.334-2 chr16 88442938 88443144 + 3 NA Intergenic Intergenic -10239 NM_153813 161882 Hs.632218 NM_153813 ENSG00000179588 ZFPM1 FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A zinc finger protein, FOG family member 1 protein-coding 670.667 chr8 119873524 119874126 + 3 NA 5' UTR (NM_001283012, exon 1 of 7) 5' UTR (NM_001283012, exon 1 of 7) 103 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 1061.17-2 chr7 128461351 128461941 + 3 NA Intergenic Intergenic 5768 NM_013332 29923 Hs.706124 NM_013332 ENSG00000135245 HILPDA C7orf68|HIG-2|HIG2 hypoxia inducible lipid droplet associated protein-coding 981.001 chr5 134183958 134184544 + 3 NA Intergenic Intergenic -7218 NM_006930 6500 Hs.171626 NM_006930 ENSG00000113558 SKP1 EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A S-phase kinase associated protein 1 protein-coding 292.5-7 chr14 70755134 70755293 + 3 NA intron (NM_033141, intron 3 of 12) intron (NM_033141, intron 3 of 12) 28239 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 873.667-2 chr5 148374616 148375359 + 3 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 8863 NR_105057 102546294 Hs.660461 NR_105057 ENSG00000247199 LOC102546294 - uncharacterized LOC102546294 ncRNA 1169.5 chr17 42116425 42117419 + 3 NA intron (NM_021078, intron 11 of 17) intron (NM_021078, intron 11 of 17) -4208 NM_024119 79132 Hs.55918 NM_024119 ENSG00000108771 DHX58 D11LGP2|D11lgp2e|LGP2|RLR-3 DExH-box helicase 58 protein-coding 752-3 chr7 8365729 8366078 + 3 NA Intergenic MIRb|SINE|MIR -67706 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 1142.34 chr7 86925826 86926903 + 3 NA intron (NM_001291991, intron 8 of 20) intron (NM_001291991, intron 8 of 20) 39535 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 900.5 chr14 80850049 80850647 + 3 NA intron (NM_152446, intron 9 of 24) intron (NM_152446, intron 9 of 24) 91390 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 977.334-2 chr2 138373844 138374555 + 3 NA Intergenic Intergenic -127571 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 911.667 chr17 79082866 79083584 + 3 NA intron (NM_001042573, intron 8 of 13) intron (NM_001042573, intron 8 of 13) 8288 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 776.333 chr12 98397362 98398147 + 3 NA Intergenic Intergenic 59391 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 710.5-2 chrX 152632310 152632909 + 3 NA Intergenic Intergenic -5286 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 607.667-3 chr8 11284284 11284748 + 3 NA promoter-TSS (NM_015458).2 promoter-TSS (NM_015458).2 -300 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 661-4 chr5 175444612 175445080 + 3 NA promoter-TSS (NM_000794) promoter-TSS (NM_000794) -664 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 354.5-6 chr3 45040613 45041110 + 3 NA Intergenic Intergenic 10718 NM_001308394 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 1201.5-2 chr11 113895680 113896757 + 3 NA Intergenic Intergenic -8578 NM_006028 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 1431.17 chr17 58249312 58250429 + 3 NA intron (NR_027647, intron 5 of 11) CpG-11471 11286 NR_027647 4025 Hs.234742 NM_006151 ENSG00000167419 LPO SPO lactoperoxidase protein-coding 637.334-2 chr12 13097878 13098432 + 3 NA intron (NM_001080555, intron 1 of 6) (T)n|Simple_repeat|Simple_repeat -2480 NM_001206843 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 406.5-5 chr2 197802875 197803201 + 3 NA Intergenic Intergenic -1555 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 374.167-9 chr7 127492839 127493077 + 3 NA Intergenic L1ME3G|LINE|L1 16075 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 845.5 chr16 3058877 3059458 + 3 NA non-coding (NR_123723, exon 1 of 5) non-coding (NR_123723, exon 1 of 5) 203 NR_123723 100507419 Hs.312579 NR_123723 MMP25-AS1 - MMP25 antisense RNA 1 ncRNA 270.833-20 chrX 19334267 19334423 + 3 NA Intergenic Intergenic -9548 NM_001173456 5160 Hs.530331 NM_000284 ENSG00000131828 PDHA1 PDHA|PDHAD|PDHCE1A|PHE1A pyruvate dehydrogenase E1 alpha 1 subunit protein-coding 522.834-2 chr2 185491095 185491394 + 3 NA Intergenic Intergenic 247475 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 1014.67 chr10 56206456 56207040 + 3 NA Intergenic Intergenic 154511 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 953.167 chr4 158729707 158730396 + 3 NA Intergenic Intergenic -6655 NM_005038 5481 Hs.183958 NM_005038 ENSG00000171497 PPID CYP-40|CYPD peptidylprolyl isomerase D protein-coding 928.667 chr17 69525796 69526426 + 3 NA intron (NM_001330450, intron 9 of 11) intron (NM_001330450, intron 9 of 11) 23849 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 618.167-2 chr19 28633686 28634214 + 3 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 27262 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 295-15 chr3 21654386 21654501 + 3 NA intron (NM_024697, intron 2 of 7) intron (NM_024697, intron 2 of 7) 96767 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 398-10 chr2 9799612 9799882 + 3 NA Intergenic L2b|LINE|L2 -43695 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 271.167-6 chr14 50775435 50775617 + 3 NA intron (NM_016350, intron 7 of 28) intron (NM_016350, intron 7 of 28) -46271 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 573.334-3 chr17 38995094 38995448 + 3 NA Intergenic AluJr|SINE|Alu -27868 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 764.166-2 chr2 135916065 135916599 + 3 NA exon (NM_001349, exon 11 of 16) exon (NM_001349, exon 11 of 16) -39889 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 418.5 chr1 58946082 58946321 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -74275 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 1747.33 chr2 176651540 176653347 + 3 NA intron (NR_110599, intron 2 of 3) intron (NR_110599, intron 2 of 3) 14689 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 1025.83 chr10 61140665 61141410 + 3 NA Intergenic Intergenic 124762 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 860.5-3 chr2 109510030 109510686 + 3 NA Intergenic Intergenic 103309 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 356.833-2 chr10 110919137 110919470 + 3 NA promoter-TSS (NR_136749) promoter-TSS (NR_136749) 63 NM_001195304 92482 Hs.232543 NM_001195304 ENSG00000214413 BBIP1 BBIP10|BBS18|NCRNA00081|bA348N5.3 BBSome interacting protein 1 protein-coding 718.166 chr4 83490498 83491281 + 3 NA Intergenic Intergenic -5789 NM_001345962 84142 Hs.334772 NM_139076 ENSG00000163322 ABRAXAS1 ABRA1|CCDC98|FAM175A abraxas 1, BRCA1 A complex subunit protein-coding 494.5-5 chr20 61589099 61589289 + 3 NA intron (NM_001252338, intron 1 of 14) intron (NM_001252338, intron 1 of 14) -10567 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 331.667-8 chr19 30002120 30002290 + 3 NA intron (NM_001252641, intron 4 of 10) intron (NM_001252641, intron 4 of 10) 59966 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 486.334-2 chr13 18973636 18973922 + 3 NA Intergenic Intergenic -34480 NR_026852 348021 Hs.314114 NR_026852 ENSG00000232685 LINC00442 - long intergenic non-protein coding RNA 442 ncRNA 633.667-2 chr11 12047162 12047514 + 3 NA intron (NR_135109, intron 1 of 1) intron (NR_135109, intron 1 of 1) 16463 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 6966 chr4 54970780 54972197 + 24.8333 NA Intergenic Intergenic 154107 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 8271.83 chr3 98038858 98040203 + 24.3333 NA Intergenic Intergenic -4226 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 6539 chr1 113072339 113073640 + 22.1667 NA promoter-TSS (NM_001312686) promoter-TSS (NM_001312686) 113 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LRIG2-DT - LRIG2 divergent transcript ncRNA 5560 chr4 81405501 81406643 + 21.5 NA Intergenic Intergenic 65835 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 4531.83 chr1 84944540 84945380 + 21.3333 NA intron (NM_153259, intron 7 of 13) intron (NM_153259, intron 7 of 13) -51754 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 5344.01 chr12 52025328 52026246 + 21 NA intron (NM_001202233, intron 1 of 7) intron (NM_001202233, intron 1 of 7) 2955 NM_001202233 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 3973.67 chr8 15378489 15379115 + 20.3333 NA Intergenic Intergenic -140371 NM_139167 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 413 chr1 214602807 214603164 + 2.83333 NA promoter-TSS (NM_016343) promoter-TSS (NM_016343) -210 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 607.833 chr20 31634187 31634471 + 2.83333 NA Intergenic AluSx1|SINE|Alu -3583 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 388.166-3 chr20 24100564 24100898 + 2.83333 NA Intergenic Intergenic -99036 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 717.499-2 chr6 152863828 152864339 + 2.83333 NA Intergenic Intergenic 113286 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 690.833 chr11 71080058 71080431 + 2.83333 NA intron (NM_012309, intron 7 of 24) intron (NM_012309, intron 7 of 24) 144552 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 542.667 chr10 80599343 80599855 + 2.83333 NA intron (NM_207372, intron 4 of 6) intron (NM_207372, intron 4 of 6) -50198 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 401.666-5 chr5 165849770 165849942 + 2.83333 NA Intergenic Intergenic 1076514 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 818.833-2 chr21 36504009 36504650 + 2.83333 NA intron (NM_001146077, intron 2 of 2) intron (NM_001146077, intron 2 of 2) -24207 NM_001146079 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 463.666-4 chr7 37097715 37098104 + 2.83333 NA intron (NM_001206480, intron 14 of 21) intron (NM_001206480, intron 14 of 21) 100113 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 390.5-3 chr12 49331742 49332002 + 2.83333 NA TTS (NM_005480) TTS (NM_005480) 5316 NM_001008223 338761 Hs.380386 NM_001008223 ENSG00000186897 C1QL4 C1QTNF11|CTRP11 complement C1q like 4 protein-coding 402.499-4 chr7 24382075 24382345 + 2.83333 NA Intergenic Intergenic 98020 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 549.166 chr15 65179247 65179517 + 2.83333 NA intron (NM_006660, intron 2 of 13) intron (NM_006660, intron 2 of 13) 5960 NR_133680 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 820.5-3 chr7 103061750 103062373 + 2.83333 NA intron (NR_105043, intron 1 of 20) intron (NR_105043, intron 1 of 20) 12507 NM_145032 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 1036.67-2 chr12 89461749 89462390 + 2.83333 NA intron (NR_037659, intron 8 of 11) intron (NR_037659, intron 8 of 11) 62727 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 347.833-5 chr5 59131927 59132153 + 2.83333 NA intron (NM_001364603, intron 5 of 15) intron (NM_001364603, intron 5 of 15) -92564 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 843.5-2 chr3 190423952 190424891 + 2.83333 NA Intergenic Intergenic 25455 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 871.167 chr9 87678357 87679126 + 2.83333 NA intron (NM_004938, intron 19 of 25) MER20B|DNA|hAT-Charlie -47378 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 1273.33 chr1 40404747 40405969 + 2.83333 NA intron (NM_001198980, intron 1 of 9) AluJr|SINE|Alu 8558 NM_001198980 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 669.666-2 chr6 99790840 99791100 + 2.83333 NA Intergenic Intergenic 184196 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 672-2 chr6 98845895 98846243 + 2.83333 NA Intergenic Intergenic 11495 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 472.833-3 chr21 17906851 17907079 + 2.83333 NA Intergenic Intergenic -10375 NM_001204176 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 680.833 chr12 38328480 38328915 + 2.83333 NA 3' UTR (NM_001308340, exon 3 of 3) 3' UTR (NM_001308340, exon 3 of 3) 11923 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 307.167-9 chr14 58298256 58298474 + 2.83333 NA promoter-TSS (NR_029434) promoter-TSS (NR_029434) -139 NM_023000 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 671.332 chr11 106077605 106077925 + 2.83333 NA promoter-TSS (NM_001330359) promoter-TSS (NM_001330359) -27 NM_152433 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 359.999-3 chr3 29192621 29192836 + 2.83333 NA Intergenic Intergenic 88211 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 827.834 chr16 35432031 35432513 + 2.83333 NA Intergenic Intergenic 48324 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 971.834 chr18 41745276 41746074 + 2.83333 NA Intergenic Intergenic -209559 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 414-8 chrX 100512337 100512888 + 2.83333 NA Intergenic Intergenic -72324 NM_022144 64102 Hs.132957 NM_022144 ENSG00000000005 TNMD BRICD4|CHM1L|TEM tenomodulin protein-coding 467.166-2 chr5 52283535 52283757 + 2.83333 NA Intergenic L1M5|LINE|L1 275615 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 698.666 chr12 38920875 38921668 + 2.83333 NA Intergenic Intergenic -15680 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 980 chr22 35023821 35024658 + 2.83333 NA Intergenic Intergenic -26323 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 478.5-8 chr8 127362161 127362495 + 2.83333 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -38071 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 457.833-2 chr11 76318948 76319221 + 2.83333 NA Intergenic L2b|LINE|L2 61881 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 697.5-2 chr3 187738466 187739510 + 2.83333 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) -2487 NM_001130845 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 575-3 chr4 85127558 85128101 + 2.83333 NA Intergenic Intergenic 160345 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 1073.5 chr3 132726072 132726874 + 2.83333 NA intron (NR_152743, intron 2 of 4) intron (NR_152743, intron 2 of 4) -4014 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 799.667-2 chr15 81105969 81106744 + 2.83333 NA Intergenic Intergenic -27914 NM_001353365 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 778.501-2 chr11 94183656 94184310 + 2.83333 NA Intergenic Intergenic 55142 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 502.833-3 chr7 138886262 138886721 + 2.83333 NA intron (NM_020910, intron 10 of 19) AluJr|SINE|Alu -88295 NM_130840 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 251.666-5 chr2 162989599 162989737 + 2.83333 NA Intergenic Intergenic -150901 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 827.833 chr17 8138074 8139060 + 2.83333 NA Intergenic L2a|LINE|L2 6504 NR_106943 102465532 NR_106943 ENSG00000284117 MIR6883 hsa-mir-6883 microRNA 6883 ncRNA 999.334-2 chr11 62612354 62613067 + 2.83333 NA promoter-TSS (NM_000327) promoter-TSS (NM_000327) -31 NM_000327 6094 Hs.281564 NM_000327 ENSG00000149489 ROM1 ROM|ROSP1|RP7|TSPAN23 retinal outer segment membrane protein 1 protein-coding 967 chr10 101214288 101215128 + 2.83333 NA Intergenic AluJb|SINE|Alu 14252 NM_006562 10660 Hs.37128 NM_006562 ENSG00000138136 LBX1 HPX-6|HPX6|LBX1H|homeobox ladybird homeobox 1 protein-coding 634.666-2 chrX 79412962 79413259 + 2.83333 NA Intergenic Intergenic -45558 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 501.5-2 chr15 78113181 78113610 + 2.83333 NA intron (NM_001271888, intron 1 of 4) MamRep564|Unknown|Unknown 18050 NM_001301224 10518 Hs.129867 NM_006383 ENSG00000136425 CIB2 DFNB48|KIP2|USH1J calcium and integrin binding family member 2 protein-coding 540.499 chr8 97582722 97582964 + 2.83333 NA Intergenic MER3|DNA|hAT-Charlie -61341 NM_001363137 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 255.667-21 chr9 115263087 115263218 + 2.83333 NA intron (NR_163556, intron 2 of 7) L2c|LINE|L2 121334 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 979.666 chr2 38581483 38581954 + 2.83333 NA intron (NM_138394, intron 6 of 12) intron (NM_138394, intron 6 of 12) 21210 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 272-2 chr1 118318211 118318473 + 2.83333 NA Intergenic Intergenic -133114 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 519.666 chr7 7596343 7596742 + 2.83333 NA intron (NM_001370078, intron 7 of 8) intron (NM_001370078, intron 7 of 8) 28516 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 409.833 chr10 19412459 19412969 + 2.83333 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 315836 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 210-49 chrX 132636223 132636332 + 2.83333 NA intron (NM_147175, intron 3 of 3) intron (NM_147175, intron 3 of 3) -31365 NR_046691 100874102 Hs.619341 NR_046691 ENSG00000235849 HS6ST2-AS1 - HS6ST2 antisense RNA 1 ncRNA 677.666 chr12 92650127 92650448 + 2.83333 NA Intergenic Intergenic -52556 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 509.834-2 chr3 38651173 38651827 + 2.83333 NA Intergenic Intergenic -1813 NM_001354701 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 557.166 chr12 3454380 3454709 + 2.83333 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -36659 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 198.167-26 chr5 147369922 147370016 + 2.83333 NA intron (NM_001112724, intron 8 of 12) intron (NM_001112724, intron 8 of 12) 83723 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 493.167-4 chr7 64498929 64499176 + 2.83333 NA Intergenic Intergenic 64019 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 322-4 chr14 50773655 50774196 + 2.83333 NA intron (NM_016350, intron 7 of 28) intron (NM_016350, intron 7 of 28) -47872 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 1050.33-2 chr20 37269438 37270113 + 2.83333 NA Intergenic Intergenic -12867 NM_001184731 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 1100.83-2 chr19 27970817 27971860 + 2.83333 NA intron (NR_146734, intron 6 of 7) intron (NR_146734, intron 6 of 7) -177398 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 1275.83 chr2 88590697 88591805 + 2.83333 NA intron (NM_004836, intron 4 of 16) intron (NM_004836, intron 4 of 16) 33678 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 1534.17 chr20 2524141 2525010 + 2.83333 NA promoter-TSS (NM_001282495) promoter-TSS (NM_001282495) -53 NM_001282495 79175 Hs.516846 NM_024325 ENSG00000088876 ZNF343 dJ734P14.5 zinc finger protein 343 protein-coding 577.5-7 chr8 106869242 106869657 + 2.83333 NA Intergenic MIRb|SINE|MIR -99205 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 625.166-2 chr8 145002740 145003306 + 2.83333 NA promoter-TSS (NR_023392) promoter-TSS (NR_023392) -124 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 335.167-9 chr4 44142382 44142560 + 2.83333 NA Intergenic L2a|LINE|L2 125409 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 726.833 chr9 77433462 77434194 + 2.83333 NA intron (NM_004297, intron 3 of 6) intron (NM_004297, intron 3 of 6) -13821 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 396 chr1 215525818 215526121 + 2.83333 NA Intergenic Intergenic -41335 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 805.001 chr5 41420923 41421543 + 2.83333 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 89368 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 252.167-15 chr3 61820060 61820159 + 2.83333 NA intron (NM_002841, intron 2 of 29) MLT2B1|LTR|ERVL 258538 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 624.834 chr1 69738187 69738591 + 2.83333 NA intron (NM_001366839, intron 3 of 25) intron (NM_001366839, intron 3 of 25) 169048 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 497.666 chr15 63108162 63108444 + 2.83333 NA Intergenic Intergenic -13558 NM_171846 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 1290.5 chr15 72226409 72227663 + 2.83333 NA intron (NM_001206798, intron 1 of 10) intron (NM_001206798, intron 1 of 10) 2875 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase M1/2 protein-coding 464.666 chr19 7004185 7004751 + 2.83333 NA TTS (NR_024372) TTS (NR_024372) 1947 NR_024372 497049 Hs.367930 NM_001011541 FLJ25758 - microtubule affinity regulating kinase 1 pseudogene pseudo 354.333-6 chr2 230908597 230908816 + 2.83333 NA 3' UTR (NM_005683, exon 2 of 2) 3' UTR (NM_005683, exon 2 of 2) 16536 NM_005683 9290 Hs.114545 NM_005683 ENSG00000135898 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 957.833-3 chr9 72024798 72025458 + 2.83333 NA Intergenic MER5A|DNA|hAT-Charlie 35477 NM_001128618 138240 Hs.371235 NM_001128618 ENSG00000204669 C9orf57 - chromosome 9 open reading frame 57 protein-coding 553-7 chr2 178788171 178788503 + 2.83333 NA intron (NM_133379, intron 13 of 45) intron (NM_133379, intron 13 of 45) 11411 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 696.834 chr14 50116891 50117471 + 2.83333 NA promoter-TSS (NM_001040662) promoter-TSS (NM_001040662) -609 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 279.167-6 chr15 100339161 100339403 + 2.83333 NA intron (NM_139057, intron 2 of 21) intron (NM_139057, intron 2 of 21) 2693 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 305.166 chr17 64503771 64503987 + 2.83333 NA intron (NM_004396, intron 4 of 12) intron (NM_004396, intron 4 of 12) 2058 NM_001320597 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 357.833-9 chr5 24935342 24935602 + 2.83333 NA Intergenic Intergenic -94889 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 944.167 chr15 91247502 91248034 + 2.83333 NA intron (NM_001323033, intron 2 of 10) LTR50|LTR|ERVL 145972 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 416.833-4 chr2 174039708 174040160 + 2.83333 NA Intergenic Intergenic 14654 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 441.166-3 chr17 49434680 49435272 + 2.83333 NA Intergenic Intergenic -20071 NM_001281497 5245 Hs.514303 NM_002634 ENSG00000167085 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 835.166 chr18 47283645 47284106 + 2.83333 NA Intergenic L1ME5|LINE|L1 -1849 NR_147192 110175910 Hs.639112 NR_147192 ENSG00000267761 MIR4527HG - MIR4527 host gene ncRNA 590.834 chr12 10331791 10332153 + 2.83333 NA TTS (NR_159946) TTS (NR_159946) 6320 NR_159946 113523642 Hs.539490 NR_159946 LINC02617 - long intergenic non-protein coding RNA 2617 ncRNA 1009.17-5 chr2 71923842 71924352 + 2.83333 NA Intergenic Intergenic 223765 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 554.334 chr4 36148109 36148386 + 2.83333 NA intron (NR_146893, intron 17 of 36) intron (NR_146893, intron 17 of 36) 95692 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 980.666-2 chr7 97027615 97028085 + 2.83333 NA Intergenic Intergenic -3019 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 564-4 chr14 24160919 24161713 + 2.83333 NA promoter-TSS (NM_006084) promoter-TSS (NM_006084) 51 NM_006084 10379 Hs.1706 NM_006084 ENSG00000213928 IRF9 IRF-9|ISGF3|ISGF3G|p48 interferon regulatory factor 9 protein-coding 710.667-4 chr17 12256282 12256916 + 2.83333 NA Intergenic Intergenic 174700 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 562.834 chr2 111072294 111072674 + 2.83333 NA intron (NM_001371254, intron 17 of 18) L1MD2|LINE|L1 43104 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 1285 chr12 48197620 48198328 + 2.83333 NA Intergenic Intergenic 5318 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 561.167-4 chr14 34301089 34301457 + 2.83333 NA Intergenic Intergenic 160967 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 698.832 chr4 109826662 109827024 + 2.83333 NA Intergenic Intergenic -1129 NM_006583 10692 Hs.658310 NM_006583 ENSG00000180245 RRH - retinal pigment epithelium-derived rhodopsin homolog protein-coding 997.167 chr7 20598687 20599324 + 2.83333 NA Intergenic Intergenic -16662 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 1188.83 chr10 24617624 24618583 + 2.83333 NA intron (NM_001367447, intron 8 of 24) MIRb|SINE|MIR 4740 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 530.999-2 chr9 111400174 111400611 + 2.83333 NA intron (NM_001363756, intron 23 of 48) L1MA4|LINE|L1 -70168 NM_205859 26248 Hs.381312 NM_205859 ENSG00000171133 OR2K2 HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P olfactory receptor family 2 subfamily K member 2 protein-coding 503-2 chr3 45551489 45551874 + 2.83333 NA Intergenic Intergenic -42136 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 244.5-31 chr8 30109186 30109310 + 2.83333 NA TTS (NM_015344) TTS (NM_015344) 13840 NM_001128208 23484 Hs.146585 NM_015344 ENSG00000104660 LEPROTL1 HSPC112|Vps55|my047 leptin receptor overlapping transcript like 1 protein-coding 597.999 chr5 145825542 145826249 + 2.83333 NA intron (NM_205846, intron 1 of 6) intron (NM_205846, intron 1 of 6) 9447 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 738.833 chr2 186460486 186460902 + 2.83333 NA Intergenic L1PA14|LINE|L1 -25566 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 901.5-4 chr2 188512435 188513144 + 2.83333 NA intron (NM_001252669, intron 4 of 8) intron (NM_001252669, intron 4 of 8) 215297 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 613.166-2 chr5 135887159 135887572 + 2.83333 NA intron (NM_001349336, intron 7 of 7) Charlie1b|DNA|hAT-Charlie 8476 NM_000590 3578 Hs.960 NM_000590 ENSG00000145839 IL9 HP40|IL-9|P40 interleukin 9 protein-coding 488.167-4 chr5 55669740 55670044 + 2.83333 NA intron (NM_001282429, intron 3 of 14) intron (NM_001282429, intron 3 of 14) 23161 NR_047649 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 1055.83-2 chr2 181714782 181715833 + 2.83333 NA Intergenic Intergenic -34642 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 314.833-13 chr9 26815870 26816060 + 2.83333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 76837 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 570-3 chr5 41270326 41271026 + 2.83333 NA Intergenic Intergenic -9207 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 818.5 chr2 56009688 56010189 + 2.83333 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) -9143 NR_030623 100126319 NR_030623 ENSG00000211520 MIR216B MIRN216B|mir-216b microRNA 216b ncRNA 796-4 chr2 229800929 229801588 + 2.83333 NA intron (NM_001348330, intron 21 of 41) intron (NM_001348330, intron 21 of 41) -86703 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 204.666-5 chr3 149352589 149352700 + 2.83333 NA Intergenic Intergenic -19008 NM_138786 116441 Hs.22026 NM_138786 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 754.667 chr15 88274361 88274971 + 2.83333 NA Intergenic Intergenic -17927 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 422-11 chr7 3431824 3432124 + 2.83333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 130722 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 879.666 chr2 152742952 152743698 + 2.83333 NA intron (NR_146431, intron 3 of 3) intron (NR_146431, intron 3 of 3) 24688 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 1010.17 chr17 28902754 28903334 + 2.83333 NA promoter-TSS (NM_144683) promoter-TSS (NM_144683) 35 NM_144683 147015 Hs.631760 NM_144683 ENSG00000167536 DHRS13 SDR7C5 dehydrogenase/reductase 13 protein-coding 529.832 chr5 91266484 91266790 + 2.83333 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat 47765 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 979.165 chr18 59996213 59996795 + 2.83333 NA Intergenic Intergenic 96508 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 599.166-2 chrX 52934901 52935225 + 2.83333 NA Intergenic CpG 21692 NM_001099684 727866 Hs.6451 NM_001099684 ENSG00000179304 FAM156B TMEM29B family with sequence similarity 156 member B protein-coding 618.333-3 chr3 27681390 27681633 + 2.83333 NA Intergenic Intergenic 40812 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 475.333-6 chr3 2551684 2552189 + 2.83333 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 313107 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 566.501 chr12 85468568 85469323 + 2.83333 NA Intergenic LTR5_Hs|LTR|ERVK 188725 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 810.833 chr14 57884400 57885021 + 2.83333 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -18618 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 679.166 chr2 11476578 11476992 + 2.83333 NA Intergenic L1ME4b|LINE|L1 -10608 NM_001278278 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 1030.5-3 chr6 157274470 157275367 + 2.83333 NA Intergenic CpG 49341 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 499.5-2 chr5 168219514 168220195 + 2.83333 NA intron (NM_001368145, intron 21 of 26) intron (NM_001368145, intron 21 of 26) 12518 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 952.334 chr9 109573863 109574773 + 2.83333 NA Intergenic L1PA15|LINE|L1 -62773 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 818.166 chr5 175464413 175465071 + 2.83333 NA Intergenic Intergenic -13818 NM_022754 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 724.666-3 chr6 159124788 159125510 + 2.83333 NA Intergenic L1ME4a|LINE|L1 -44251 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 573.5-2 chr4 37812715 37813211 + 2.83333 NA Intergenic HAL1|LINE|L1 -13723 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 648.834 chr10 84205555 84206020 + 2.83333 NA intron (NM_033100, intron 9 of 16) intron (NM_033100, intron 9 of 16) 11250 NM_033100 92211 Hs.137556 NM_033100 ENSG00000148600 CDHR1 CORD15|PCDH21|PRCAD|RP65 cadherin related family member 1 protein-coding 598.666 chr1 95234197 95234435 + 2.83333 NA promoter-TSS (NR_125948) promoter-TSS (NR_125948) 106 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 1066.5 chr5 178164157 178164654 + 2.83333 NA Intergenic Intergenic -10445 NM_017838 55651 Hs.744074 NM_017838 ENSG00000145912 NHP2 DKCB2|NHP2P|NOLA2 NHP2 ribonucleoprotein protein-coding 610.167-2 chr5 64811194 64811838 + 2.83333 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 42586 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 343.333-12 chr5 140919398 140919552 + 2.83333 NA intron (NM_018904, intron 1 of 3) L1M4b|LINE|L1 -7242 NM_031882 56135 Hs.199343 NM_018898 ENSG00000248383 PCDHAC1 PCDH-ALPHA-C1 protocadherin alpha subfamily C, 1 protein-coding 1132.17 chr10 48659594 48660560 + 2.83333 NA Intergenic L1MEi|LINE|L1 -3812 NR_045675 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 382.5-8 chr5 120388394 120388619 + 2.83333 NA Intergenic Intergenic -75772 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 871.333 chr17 27332444 27333143 + 2.83333 NA Intergenic CpG 38679 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 646.5-5 chr7 30937402 30937939 + 2.83333 NA Intergenic Intergenic 25817 NM_001329872 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 1167.33 chr17 31842452 31843146 + 2.83333 NA Intergenic Intergenic 16163 NM_001330176 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 562.833 chr2 15939582 15939909 + 2.83333 NA promoter-TSS (NM_001293233) promoter-TSS (NM_001293233) -805 NM_001293233 4613 Hs.25960 NM_005378 ENSG00000134323 MYCN MODED|N-myc|NMYC|ODED|bHLHe37 MYCN proto-oncogene, bHLH transcription factor protein-coding 368.001 chr12 77186188 77186425 + 2.83333 NA Intergenic Intergenic -120737 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 959.667 chr1 205141571 205142278 + 2.83333 NA TTS (NM_015375) TTS (NM_015375) -19946 NM_005057 5929 Hs.519230 NM_005057 ENSG00000117222 RBBP5 RBQ3|SWD1 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding 616.833 chr17 39547845 39548132 + 2.83333 NA Intergenic Intergenic 59932 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 1104.5-2 chr22 24951844 24952912 + 2.83333 NA Intergenic CpG -5683 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 530.5 chr4 87465532 87466408 + 2.83333 NA Intergenic Intergenic 43373 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 693.499 chr10 72875386 72876060 + 2.83333 NA intron (NM_138357, intron 6 of 7) intron (NM_138357, intron 6 of 7) -18016 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 283.5-7 chr18 2872612 2872827 + 2.83333 NA intron (NM_032048, intron 2 of 7) intron (NM_032048, intron 2 of 7) 25713 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 517.833-2 chr2 9333617 9334029 + 2.83333 NA intron (NM_003887, intron 7 of 27) intron (NM_003887, intron 7 of 27) 88768 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 559.999 chr6 83414144 83414502 + 2.83333 NA intron (NM_002395, intron 1 of 13) intron (NM_002395, intron 1 of 13) 16728 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 709.666 chr7 2157845 2158544 + 2.83333 NA intron (NM_001013837, intron 10 of 18) intron (NM_001013837, intron 10 of 18) -69142 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 474-5 chr16 72099325 72100035 + 2.83333 NA intron (NM_014003, intron 7 of 26) intron (NM_014003, intron 7 of 26) -5302 NM_001142318 54957 Hs.134406 NM_017853 ENSG00000140830 TXNL4B DLP|Dim2 thioredoxin like 4B protein-coding 316.333-3 chr11 40214766 40214939 + 2.83333 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 78278 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 410.833-4 chr21 15790476 15790722 + 2.83333 NA intron (NM_001283042, intron 4 of 24) intron (NM_001283042, intron 4 of 24) 60617 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 622.167 chr7 50446421 50446928 + 2.83333 NA exon (NM_001346564, exon 4 of 4) exon (NM_001346564, exon 4 of 4) 3676 NM_001287492 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 352-9 chr3 176939171 176939484 + 2.83333 NA Intergenic Intergenic -122326 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 424-5 chr20 50740094 50740296 + 2.83333 NA intron (NM_032521, intron 2 of 2) intron (NM_032521, intron 2 of 2) 8615 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 570.166 chr5 74640633 74641157 + 2.83333 NA non-coding (NR_046318, exon 1 of 2) non-coding (NR_046318, exon 1 of 2) 529 NM_003633 8507 Hs.104925 NM_003633 ENSG00000171617 ENC1 CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10 ectodermal-neural cortex 1 protein-coding 703 chr16 80466354 80466866 + 2.83333 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -74124 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 379.166-2 chr17 75039206 75039376 + 2.83333 NA intron (NM_001003785, intron 3 of 4) intron (NM_001003785, intron 3 of 4) 6724 NR_110835 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 1049.83-2 chr5 7260629 7261454 + 2.83333 NA Intergenic L1M4b|LINE|L1 8313 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 406.999-2 chr6 151194876 151195135 + 2.83333 NA Intergenic L1M3|LINE|L1 33452 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 817.666 chr1 117512667 117513306 + 2.83333 NA intron (NM_006699, intron 12 of 12) L1ME1|LINE|L1 92784 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 650.833-3 chr4 4995042 4995336 + 2.83333 NA Intergenic Intergenic 24269 NM_018659 54360 Hs.13872 NM_018659 ENSG00000170891 CYTL1 C17|C4orf4 cytokine like 1 protein-coding 567.499 chr10 60422202 60422420 + 2.83333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -32436 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 500 chr1 9868470 9868809 + 2.83333 NA intron (NM_020248, intron 5 of 5) AluSx1|SINE|Alu 41630 NM_001012329 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 636.499 chr17 71117981 71118472 + 2.83333 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 83953 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 703.667 chr17 44331146 44331746 + 2.83333 NA Intergenic Intergenic -6576 NM_001321241 51629 Hs.744880 NM_016016 ENSG00000013306 SLC25A39 CGI-69|CGI69 solute carrier family 25 member 39 protein-coding 433.833 chr1 186496404 186496593 + 2.83333 NA Intergenic Intergenic -35384 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 580.668 chr5 151059345 151059701 + 2.83333 NA intron (NM_001258454, intron 5 of 17) intron (NM_001258454, intron 5 of 17) 5608 NM_001258455 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 778-2 chr3 22887835 22888277 + 2.83333 NA Intergenic Intergenic 314522 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 396.833-6 chr12 130915944 130916418 + 2.83333 NA Intergenic L2a|LINE|L2 -37726 NM_001330497 283383 Hs.719239 NM_198827 ENSG00000111452 ADGRD1 GPR133|PGR25 adhesion G protein-coupled receptor D1 protein-coding 835.999-2 chr20 45778950 45779508 + 2.83333 NA intron (NM_080614, intron 4 of 6) intron (NM_080614, intron 4 of 6) 12654 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 568.499-2 chr3 64030612 64031100 + 2.83333 NA Intergenic Intergenic -6846 NM_001271780 9861 Hs.152536 NM_014814 ENSG00000163636 PSMD6 Rpn7|S10|SGA-113M|p42A|p44S10 proteasome 26S subunit, non-ATPase 6 protein-coding 745.332 chr2 85679115 85679642 + 2.83333 NA Intergenic Intergenic -10637 NM_198843 6439 Hs.512690 NM_000542 ENSG00000168878 SFTPB PSP-B|SFTB3|SFTP3|SMDP1|SP-B surfactant protein B protein-coding 636.666 chr12 42297410 42297771 + 2.83333 NA Intergenic L1MEg|LINE|L1 26269 NR_107005 102467003 NR_107005 ENSG00000278520 MIR7851 hsa-mir-7851 microRNA 7851 ncRNA 1271 chr4 121252057 121253005 + 2.83333 NA Intergenic Intergenic -25048 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 522.5 chr17 39174885 39175499 + 2.83333 NA 3' UTR (NM_000723, exon 14 of 14) 3' UTR (NM_000723, exon 14 of 14) -9031 NM_001143968 390790 Hs.568007 NM_001143968 ENSG00000141748 ARL5C ARL12 ADP ribosylation factor like GTPase 5C protein-coding 217.167-6 chr10 58268954 58269074 + 2.83333 NA promoter-TSS (NM_018464) promoter-TSS (NM_018464) -148 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 399.167-2 chr12 85477122 85477592 + 2.83333 NA Intergenic Intergenic 197137 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 1396.17 chr8 111797088 111798103 + 2.83333 NA Intergenic LTR33C|LTR|ERVL 420956 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 487.334-2 chr4 54232243 54233024 + 2.83333 NA promoter-TSS (NM_001347829) promoter-TSS (NM_001347829) -467 NM_001347829 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 475 chr11 116193215 116193797 + 2.83333 NA Intergenic Intergenic -433306 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 578.833 chr11 77471482 77471804 + 2.83333 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 2420 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 450.666-4 chr19 37242921 37243248 + 2.83333 NA exon (NM_001345947, exon 5 of 5) exon (NM_001345947, exon 5 of 5) -8801 NR_110719 101927667 Hs.633102 NR_110718 ENSG00000226686 LINC01535 - long intergenic non-protein coding RNA 1535 ncRNA 731.999-2 chr8 32225036 32225502 + 2.83333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 199051 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 581.333-2 chr6 45714804 45715181 + 2.83333 NA Intergenic Intergenic 222605 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 997.334 chr2 151437535 151438308 + 2.83333 NA intron (NM_001177665, intron 12 of 33) MIR|SINE|MIR 28019 NM_001177663 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 990.333 chr12 75725018 75725998 + 2.83333 NA Intergenic Intergenic -213899 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 314.334-3 chr1 200807374 200807546 + 2.83333 NA exon (NM_203459, exon 3 of 17) exon (NM_203459, exon 3 of 17) -65521 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 532-3 chr3 10757464 10757899 + 2.83333 NA Intergenic MIR|SINE|MIR 6528 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 1589.5 chr10 113563335 113564084 + 2.83333 NA intron (NM_004132, intron 1 of 12) intron (NM_004132, intron 1 of 12) 10656 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 733.666-2 chr14 78448233 78448668 + 2.83333 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 44731 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 584.332 chr8 91343521 91343962 + 2.83333 NA intron (NM_134266, intron 9 of 18) intron (NM_134266, intron 9 of 18) 94422 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 738.334 chr11 5891175 5891777 + 2.83333 NA Intergenic L1PA16|LINE|L1 7183 NM_001005165 390081 Hs.553739 NM_001005165 ENSG00000180974 OR52E4 OR11-55 olfactory receptor family 52 subfamily E member 4 protein-coding 563.334-5 chr7 77798493 77798947 + 2.83333 NA promoter-TSS (NM_032936) promoter-TSS (NM_032936) -53 NM_001366085 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 896 chr1 221435206 221436224 + 2.83333 NA Intergenic Intergenic -99419 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 666.666-3 chr20 46132333 46132850 + 2.83333 NA Intergenic MIR3|SINE|MIR 14277 NR_126502 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 461-2 chr12 50084790 50085451 + 2.83333 NA promoter-TSS (NM_003076) promoter-TSS (NM_003076) -222 NM_003076 6602 Hs.79335 NM_003076 ENSG00000066117 SMARCD1 BAF60A|CRACD1|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein-coding 1374.5-2 chrX 50691459 50692287 + 2.83333 NA intron (NR_027121, intron 2 of 9) intron (NR_027121, intron 2 of 9) 122171 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 824.833-3 chr8 72155082 72155570 + 2.83333 NA Intergenic Intergenic -79742 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 619.166 chr2 146821495 146822261 + 2.83333 NA Intergenic Intergenic 234821 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 468.333-2 chr3 44198415 44199073 + 2.83333 NA Intergenic Intergenic -43142 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 337-3 chr14 61470639 61470812 + 2.83333 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 99469 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 490.333 chr1 59499593 59499823 + 2.83333 NA intron (NM_001350794, intron 6 of 14) intron (NM_001350794, intron 6 of 14) -15922 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 754.5-3 chr8 101756507 101757086 + 2.83333 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 34173 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 933.5 chr4 158169986 158171042 + 2.83333 NA promoter-TSS (NR_147407) promoter-TSS (NR_147407) -238 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 548.334-3 chr19 40219723 40220103 + 2.83333 NA Intergenic MIR|SINE|MIR -1514 NM_152479 148014 Hs.631572 NM_152479 ENSG00000174521 TTC9B - tetratricopeptide repeat domain 9B protein-coding 650.333 chr12 126784118 126784483 + 2.83333 NA Intergenic Intergenic -12038 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 745.499 chr10 54133151 54133844 + 2.83333 NA intron (NM_001354411, intron 15 of 34) intron (NM_001354411, intron 15 of 34) -352733 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 535.501-4 chr7 129367302 129367792 + 2.83333 NA promoter-TSS (NM_001130723) promoter-TSS (NM_001130723) -833 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 404.333-4 chr18 63422413 63422791 + 2.83333 NA promoter-TSS (NM_004869) promoter-TSS (NM_004869) -126 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 536.333 chr15 68854654 68854882 + 2.83333 NA Intergenic L1MDa|LINE|L1 -33873 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 686.167-2 chr12 56299829 56300746 + 2.83333 NA promoter-TSS (NM_004077) promoter-TSS (NM_004077) 43 NM_004077 1431 Hs.743252 NM_004077 ENSG00000062485 CS - citrate synthase protein-coding 664.166-2 chr13 84844011 84844916 + 2.83333 NA Intergenic Intergenic 60809 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 273.666-2 chr14 73881289 73881470 + 2.83333 NA intron (NM_001371328, intron 7 of 8) intron (NM_001371328, intron 7 of 8) -5480 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 214-25 chr18 57558001 57558255 + 2.83333 NA intron (NM_001371094, intron 6 of 9) intron (NM_001371094, intron 6 of 9) 28574 NM_001371094 338.334-5 chr22 36388136 36388293 + 2.83333 NA promoter-TSS (NM_002473) promoter-TSS (NM_002473) -147 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 557.666-3 chr6 54164264 54164478 + 2.83333 NA intron (NM_001281746, intron 8 of 11) L1MEh|LINE|L1 52928 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 827.667 chr6 44319832 44320440 + 2.83333 NA Intergenic AluSx1|SINE|Alu -6789 NM_020745 57505 Hs.158381 NM_020745 ENSG00000124608 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 567.499-2 chr22 22745478 22745880 + 2.83333 NA Intergenic Intergenic -77097 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 323.166-5 chr4 124716045 124716167 + 2.83333 NA Intergenic Intergenic -3374 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 600.834-2 chrX 41798033 41798473 + 2.83333 NA intron (NM_003688, intron 2 of 26) intron (NM_003688, intron 2 of 26) 74072 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 1107.33 chr11 75444933 75445727 + 2.83333 NA intron (NM_030792, intron 9 of 16) MIR3|SINE|MIR 6997 NM_001351167 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 1535 chr2 31333516 31334464 + 2.83333 NA TTS (NM_000379) TTS (NM_000379) 80752 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 724.5-4 chr20 34129595 34130332 + 2.83333 NA Intergenic HERVK-int|LTR|ERVK -17720 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 217.5-7 chr15 101684447 101684549 + 2.83333 NA intron (NM_152334, intron 11 of 18) L2c|LINE|L2 -32107 NM_025141 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 861.166 chr22 45268693 45269230 + 2.83333 NA Intergenic ORSL|DNA|hAT-Tip100 -15988 NM_001167574 7380 Hs.632787 NM_006953 ENSG00000100373 UPK3A UP3A|UPIII|UPIIIA|UPK3 uroplakin 3A protein-coding 496-2 chr9 75588746 75589226 + 2.83333 NA Intergenic Intergenic -301658 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 690.166 chr18 70171956 70172397 + 2.83333 NA intron (NM_173630, intron 11 of 48) intron (NM_173630, intron 11 of 48) 33511 NM_173630 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 932.333-2 chr22 46122219 46122584 + 2.83333 NA Intergenic Intergenic 8715 NR_029479 406884 NR_029479 ENSG00000284520 MIRLET7B LET7B|MIRNLET7B|hsa-let-7b|let-7b microRNA let-7b ncRNA 380.833-2 chr18 70850295 70850471 + 2.83333 NA Intergenic L2a|LINE|L2 -199429 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 616.834 chr5 150758635 150759081 + 2.83333 NA promoter-TSS (NM_001135644) promoter-TSS (NM_001135644) 237 NM_016221 51164 Hs.675564 NM_016221 ENSG00000132912 DCTN4 DYN4|P62 dynactin subunit 4 protein-coding 607 chr11 67382320 67382963 + 2.83333 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) -8464 NM_001166212 23529 Hs.502977 NM_013246 ENSG00000175505 CLCF1 BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6 cardiotrophin like cytokine factor 1 protein-coding 594.833-2 chr17 51298559 51298964 + 2.83333 NA TTS (NM_016001) TTS (NM_016001) 36401 NR_110751 101927274 Hs.591168 NR_110751 ENSG00000249383 LINC02071 - long intergenic non-protein coding RNA 2071 ncRNA 466.168 chr2 17113173 17113488 + 2.83333 NA Intergenic L1MC5|LINE|L1 405110 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 486.166-2 chr22 37965145 37965640 + 2.83333 NA intron (NR_125371, intron 3 of 4) intron (NR_125371, intron 3 of 4) -2171 NR_106878 102465492 NR_106878 ENSG00000284289 MIR6820 hsa-mir-6820 microRNA 6820 ncRNA 631.501-2 chr2 135709576 135710450 + 2.83333 NA intron (NM_001282798, intron 21 of 25) intron (NM_001282798, intron 21 of 25) -31842 NM_014607 23190 Hs.591242 NM_014607 ENSG00000144224 UBXN4 UBXD2|UBXDC1|erasin UBX domain protein 4 protein-coding 1114.17-2 chr6 111057198 111057840 + 2.83333 NA Intergenic L1ME4b|LINE|L1 -9965 NR_002932 442245 Hs.551627 NR_002932 GSTM2P1 - glutathione S-transferase mu 2 pseudogene 1 pseudo 777.666-2 chrX 83635151 83635886 + 2.83333 NA Intergenic LTR13|LTR|ERVK 127228 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 856.666 chr5 147822498 147823131 + 2.83333 NA Intergenic Intergenic 16417 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 1045.33 chr1 222465018 222465754 + 2.83333 NA Intergenic Intergenic 82718 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 524-2 chr17 28335028 28335766 + 2.83333 NA promoter-TSS (NM_001267778) promoter-TSS (NM_001267778) 75 NM_001267776 90410 Hs.705431 NM_174887 ENSG00000109083 IFT20 - intraflagellar transport 20 protein-coding 302.333-18 chr9 87599914 87600132 + 2.83333 NA intron (NM_004938, intron 2 of 25) Tigger17a|DNA|TcMar-Tigger 46569 NR_146781 100506897 Hs.656160 NR_146781 ENSG00000236709 DAPK1-IT1 - DAPK1 intronic transcript 1 ncRNA 460.166 chr18 21080849 21081199 + 2.83333 NA intron (NM_005406, intron 1 of 32) L1MB4|LINE|L1 30789 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 560.833 chr6 71533765 71534231 + 2.83333 NA Intergenic Intergenic 112971 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 462.5-9 chr6 127329618 127329932 + 2.83333 NA intron (NM_001105545, intron 1 of 3) MER33|DNA|hAT-Charlie 12632 NM_001139510 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 358.333-6 chr5 54220758 54220913 + 2.83333 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 89738 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 589.667 chr5 132501130 132501773 + 2.83333 NA Intergenic Intergenic -10678 NR_149068 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 447.667-4 chr12 92987349 92987651 + 2.83333 NA Intergenic Intergenic -58205 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 285.333-2 chr1 161291523 161291781 + 2.83333 NA Intergenic Intergenic 18316 NM_001315491 4359 Hs.591486 NM_000530 ENSG00000158887 MPZ CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0 myelin protein zero protein-coding 531.667-3 chr15 83565430 83565848 + 2.83333 NA intron (NM_001324185, intron 4 of 9) intron (NM_001324185, intron 4 of 9) 75025 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 845-2 chr3 68878253 68879094 + 2.83333 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 53874 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 456.333-2 chr5 108750324 108750542 + 2.83333 NA intron (NR_146155, intron 1 of 19) intron (NR_146155, intron 1 of 19) 1485 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 743.999 chr5 68252813 68253429 + 2.83333 NA intron (NM_181523, intron 2 of 15) intron (NM_181523, intron 2 of 15) -35398 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 800.333 chr7 50205488 50205846 + 2.83333 NA Intergenic Intergenic -98397 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 425.833-2 chr14 52043836 52044113 + 2.83333 NA intron (NM_007361, intron 5 of 21) intron (NM_007361, intron 5 of 21) 25085 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 365.167 chr12 96525021 96525219 + 2.83333 NA intron (NM_001306084, intron 8 of 67) L1ME4c|LINE|L1 35543 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 903.834 chr4 86495856 86496511 + 2.83333 NA Intergenic Intergenic -42988 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 348 chr10 72567897 72568229 + 2.83333 NA intron (NM_006077, intron 1 of 11) intron (NM_006077, intron 1 of 11) -44077 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 655.499 chr1 156225351 156226000 + 2.83333 NA intron (NM_001199654, intron 2 of 4) intron (NM_001199654, intron 2 of 4) 12687 NM_007221 11243 Hs.530479 NM_007221 ENSG00000160783 PMF1 - polyamine modulated factor 1 protein-coding 766.833 chr2 240233084 240233406 + 2.83333 NA Intergenic Intergenic -92587 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 568.833 chr8 140668395 140669010 + 2.83333 NA intron (NM_001352737, intron 30 of 32) intron (NM_001352737, intron 30 of 32) -33069 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 362.167-4 chr11 57295172 57295358 + 2.83333 NA Intergenic AluJr|SINE|Alu 29687 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 475.833-7 chr5 147857501 147857923 + 2.83333 NA Intergenic Intergenic -18481 NM_003122 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 386.167-3 chr10 53461866 53462048 + 2.83333 NA Intergenic Intergenic -690257 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 605 chr14 59632024 59632561 + 2.83333 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -1478 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 687.5-3 chr5 177071432 177072222 + 2.83333 NA intron (NM_001308213, intron 8 of 8) intron (NM_001308213, intron 8 of 8) -15088 NM_001354984 2264 Hs.165950 NM_002011 ENSG00000160867 FGFR4 CD334|JTK2|TKF fibroblast growth factor receptor 4 protein-coding 672.667-4 chr9 32350695 32351307 + 2.83333 NA Intergenic Intergenic -33602 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 899.166 chr9 34612685 34613209 + 2.83333 NA promoter-TSS (NM_148179) promoter-TSS (NM_148179) -850 NM_148178 138716 Hs.15961 NM_148178 ENSG00000164967 RPP25L C9orf23|bA296L22.5 ribonuclease P/MRP subunit p25 like protein-coding 1099.67 chr11 33808026 33808689 + 2.83333 NA Intergenic Intergenic 33658 NR_120550 101928440 Hs.202343 NR_120550 ENSG00000254508 FBXO3-DT FBXO3-AS1 FBXO3 divergent transcript ncRNA 756.832 chr19 35043924 35044568 + 2.83333 NA intron (NM_002151, intron 3 of 13) (GCT)n|Simple_repeat|Simple_repeat 3740 NM_182983 3249 Hs.182385 NM_002151 ENSG00000105707 HPN TMPRSS1 hepsin protein-coding 720.001 chr11 112156956 112157613 + 2.83333 NA intron (NM_001243211, intron 1 of 4) intron (NM_001243211, intron 1 of 4) 6810 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 459.666 chr1 174817194 174817554 + 2.83333 NA intron (NM_001366446, intron 19 of 25) L2c|LINE|L2 17636 NM_001330989 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 940 chr10 80924144 80924803 + 2.83333 NA Intergenic Intergenic 274676 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 1217.83 chr2 177148622 177149370 + 2.83333 NA Intergenic Intergenic 63415 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 1091.67-2 chr22 31084958 31085627 + 2.83333 NA intron (NM_001207018, intron 1 of 19) CpG 296 NM_001207018 6525 Hs.149098 NM_006932 ENSG00000183963 SMTN - smoothelin protein-coding 632.833 chr11 128031122 128031977 + 2.83333 NA Intergenic Intergenic -177217 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 381.999 chr2 173884293 173884559 + 2.83333 NA Intergenic Intergenic 79454 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 407.833-5 chr6 156564321 156564699 + 2.83333 NA Intergenic Intergenic 185760 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 566.667-2 chr14 76784891 76785189 + 2.83333 NA TTS (NM_015305) TTS (NM_015305) 1684 NR_104183 100506603 Hs.673984 NR_104183 ENSG00000258301 VASH1-AS1 - VASH1 antisense RNA 1 ncRNA 714.333 chr20 31562642 31563193 + 2.83333 NA intron (NM_178580, intron 10 of 12) intron (NM_178580, intron 10 of 12) 10346 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 1284.67-2 chr4 22410433 22411232 + 2.83333 NA intron (NM_145290, intron 14 of 18) intron (NM_145290, intron 14 of 18) -71166 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 248.667-37 chr8 22595314 22595447 + 2.83333 NA 3' UTR (NM_176871, exon 10 of 10) 3' UTR (NM_176871, exon 10 of 10) -4219 NM_001013842 541565 Hs.743508 NM_173686 ENSG00000241852 C8orf58 - chromosome 8 open reading frame 58 protein-coding 1290 chr20 21235408 21236426 + 2.83333 NA intron (NM_018474, intron 11 of 12) intron (NM_018474, intron 11 of 12) -17628 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 723.833-2 chr2 120559495 120560078 + 2.83333 NA Intergenic MLT1B|LTR|ERVL-MaLR -93437 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 480.833-2 chr11 17354573 17354848 + 2.83333 NA intron (NM_001202439, intron 1 of 4) intron (NM_001202439, intron 1 of 4) 2910 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 616.833-4 chr8 140390927 140391469 + 2.83333 NA intron (NM_001160372, intron 7 of 22) intron (NM_001160372, intron 7 of 22) 66546 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 321.333-8 chr19 46545501 46545651 + 2.83333 NA intron (NM_001370550, intron 1 of 2) MIRb|SINE|MIR -49709 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 590.167 chr1 1116132 1116649 + 2.83333 NA promoter-TSS (NM_001330306) promoter-TSS (NM_001330306) -301 NM_017891 54991 Hs.235095 NM_017891 ENSG00000131591 C1orf159 - chromosome 1 open reading frame 159 protein-coding 394.5-8 chr4 167772809 167773015 + 2.83333 NA Intergenic Intergenic -319625 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 512.666 chr8 78855923 78856134 + 2.83333 NA Intergenic Intergenic 18499 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 598.5-2 chr22 30445309 30445594 + 2.83333 NA Intergenic MIR|SINE|MIR 12765 NR_148046 105372990 Hs.565803 NR_148046 LOC105372990 - uncharacterized LOC105372990 ncRNA 760 chr1 54489310 54489849 + 2.83333 NA Intergenic CpG -58649 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 582.999 chr15 91706233 91706845 + 2.83333 NA Intergenic Intergenic -147169 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 613.333-2 chr12 88111046 88111503 + 2.83333 NA exon (NM_025114, exon 22 of 54) exon (NM_025114, exon 22 of 54) 30942 NM_025114 80184 Hs.150444 NM_025114 ENSG00000198707 CEP290 3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16 centrosomal protein 290 protein-coding 304-19 chr21 24581271 24581416 + 2.83333 NA Intergenic Intergenic 152603 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 358.666 chr1 113429045 113429196 + 2.83333 NA intron (NM_001142782, intron 1 of 20) L1M5|LINE|L1 38605 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 406.666-2 chr11 23991784 23991982 + 2.83333 NA Intergenic Intergenic -505170 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 286.5-14 chr6 53437661 53437832 + 2.83333 NA Intergenic Intergenic -88567 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 1388.33 chr14 21913400 21914386 + 2.83333 NA Intergenic Intergenic -242876 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 401.001 chr2 70213042 70213296 + 2.83333 NA intron (NR_147232, intron 10 of 10) intron (NR_147232, intron 10 of 10) -22150 NM_001348760 54980 Hs.720049 NM_017880 ENSG00000115998 C2orf42 - chromosome 2 open reading frame 42 protein-coding 764.5 chr7 81470151 81470537 + 2.83333 NA Intergenic HERVL40-int|LTR|ERVL 91475 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 601.833-2 chr6 158214102 158214408 + 2.83333 NA Intergenic Intergenic 45908 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 208.167-16 chr20 41232506 41232633 + 2.83333 NA intron (NM_015035, intron 2 of 3) MamGypsy2-LTR|LTR|Gypsy 63546 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 629 chr6 92591841 92592112 + 2.83333 NA Intergenic Intergenic 827583 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 482.166-2 chr5 30506509 30506855 + 2.83333 NA Intergenic Intergenic 626122 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 617.499 chr4 139416016 139416253 + 2.83333 NA Intergenic MIR3|SINE|MIR 37907 NR_159963 107984036 Hs.605782 NR_159963 LOC107984036 - uncharacterized LOC107984036 ncRNA 326.834-4 chr2 22656248 22656445 + 2.83333 NA Intergenic Tigger1|DNA|TcMar-Tigger 119867 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 563.333-6 chr7 6602310 6602818 + 2.83333 NA intron (NM_024067, intron 5 of 5) MIRc|SINE|MIR 12543 NM_001303039 79034 Hs.487511 NM_024067 ENSG00000146576 C7orf26 - chromosome 7 open reading frame 26 protein-coding 582.5-3 chr17 40615526 40615889 + 2.83333 NA Intergenic Intergenic 32111 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 604.833-2 chr2 171703580 171704048 + 2.83333 NA intron (NM_001271788, intron 3 of 15) intron (NM_001271788, intron 3 of 15) 16059 NM_001271789 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 1442.67 chr11 19563573 19564542 + 2.83333 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -11253 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 619.999 chr3 42613312 42613728 + 2.83333 NA intron (NR_125400, intron 2 of 2) intron (NR_125400, intron 2 of 2) -12442 NM_001201572 9117 Hs.445892 NM_004206 ENSG00000093183 SEC22C SEC22L3 SEC22 homolog C, vesicle trafficking protein protein-coding 330.833-4 chr11 133835322 133835566 + 2.83333 NA Intergenic Intergenic 10069 NM_174927 219938 Hs.97541 NM_174927 ENSG00000166118 SPATA19 CT132|SPAS1|spergen1 spermatogenesis associated 19 protein-coding 485.333-6 chr4 158172441 158172711 + 2.83333 NA promoter-TSS (NM_016613) promoter-TSS (NM_016613) -203 NM_016613 51313 Hs.567498 NM_016613 ENSG00000164125 GASK1B AD021|AD036|C4orf18|ENED|FAM198B golgi associated kinase 1B protein-coding 346.833-3 chr13 25005086 25005428 + 2.83333 NA Intergenic Intergenic -36788 NR_026730 646405 Hs.620592 NM_001126062 TPTE2P1 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudo 1021.83 chr7 83655933 83656594 + 2.83333 NA Intergenic Intergenic -7124 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 356.666-6 chr7 74233742 74233905 + 2.83333 NA intron (NM_001278791, intron 10 of 10) L1ME1|LINE|L1 20576 NM_181471 5982 Hs.647062 NM_002914 ENSG00000049541 RFC2 RFC40 replication factor C subunit 2 protein-coding 521.333-3 chr17 6911385 6911713 + 2.83333 NA Intergenic L1M1|LINE|L1 17772 NR_120453 245 Hs.378695 NR_002710 ENSG00000262943 ALOX12P2 ALOX12E arachidonate 12-lipoxygenase pseudogene 2 pseudo 727.167 chr15 56429083 56429499 + 2.83333 NA intron (NM_018365, intron 9 of 9) intron (NM_018365, intron 9 of 9) 35846 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 1377.84 chr11 95151216 95152130 + 2.83333 NA non-coding (NR_110303, exon 1 of 3) non-coding (NR_110303, exon 1 of 3) 1134 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 454 chr10 35239918 35240270 + 2.83333 NA Intergenic Intergenic -6931 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 399-13 chr7 120940963 120941317 + 2.83333 NA Intergenic Intergenic -9637 NM_198267 54556 Hs.489811 NM_019071 ENSG00000071243 ING3 Eaf4|ING2|MEAF4|p47ING3 inhibitor of growth family member 3 protein-coding 452.666-2 chr9 27005439 27005699 + 2.83333 NA intron (NM_022901, intron 1 of 4) A-rich|Low_complexity|Low_complexity 103 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 669.5-2 chr14 22276975 22277484 + 2.83333 NA Intergenic Intergenic 155524 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 528.666 chr1 244833650 244833955 + 2.83333 NA Intergenic Intergenic -1504 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 381.999-2 chr6 64267909 64268128 + 2.83333 NA intron (NM_001292009, intron 30 of 43) L1ME4b|LINE|L1 461182 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 547.334 chr15 83436772 83437182 + 2.83333 NA Intergenic Intergenic -10251 NM_001324182 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 641-3 chr4 58242558 58242962 + 2.83333 NA Intergenic LTR86A1|LTR|ERVL 293568 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 1315.67 chr10 69958098 69959107 + 2.83333 NA intron (NM_080801, intron 38 of 38) intron (NM_080801, intron 38 of 38) -94244 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 356.5-8 chr4 46587516 46587850 + 2.83333 NA Intergenic Intergenic -197555 NM_000807 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 442-2 chr11 67583577 67583786 + 2.83333 NA promoter-TSS (NM_000852) promoter-TSS (NM_000852) 86 NM_000852 2950 Hs.523836 NM_000852 ENSG00000084207 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding 642.5 chr11 96393714 96394329 + 2.83333 NA TTS (NM_001261833) TTS (NM_001261833) 4008 NM_003772 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 934.5-3 chr15 71780310 71780966 + 2.83333 NA 3' UTR (NM_024817, exon 17 of 17) 3' UTR (NM_024817, exon 17 of 17) -29916 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 325.5-16 chr3 147500573 147500697 + 2.83333 NA intron (NR_121655, intron 1 of 2) intron (NR_121655, intron 1 of 2) 79308 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 290.333-10 chr19 10936391 10936878 + 2.83333 NA Intergenic AluSx1|SINE|Alu 7823 NM_138358 90580 Hs.164026 NM_138358 ENSG00000142444 TIMM29 C19orf52|TIM29 translocase of inner mitochondrial membrane 29 protein-coding 1157.83-3 chr7 137454026 137454838 + 2.83333 NA intron (NM_001321710, intron 27 of 32) intron (NM_001321710, intron 27 of 32) -110699 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 566.499 chr18 10709568 10709820 + 2.83333 NA intron (NM_022068, intron 36 of 51) intron (NM_022068, intron 36 of 51) 47761 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 451.666-2 chr5 3472477 3472698 + 2.83333 NA intron (NR_033898, intron 2 of 4) L1ME3|LINE|L1 19771 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 1247.17 chr1 204162267 204163080 + 2.83333 NA intron (NM_000537, intron 1 of 9) intron (NM_000537, intron 1 of 9) 3664 NM_000537 5972 Hs.3210 NM_000537 ENSG00000143839 REN HNFJ2 renin protein-coding 718.666-2 chr4 147866553 147867253 + 2.83333 NA intron (NM_024605, intron 7 of 22) intron (NM_024605, intron 7 of 22) 84308 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 649.5-4 chr3 115692488 115693372 + 2.83333 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 69420 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 570.666-3 chr3 161509007 161509279 + 2.83333 NA Intergenic MamRep564|Unknown|Unknown 12335 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 393.5-6 chr19 28239460 28239741 + 2.83333 NA Intergenic L2c|LINE|L2 -367088 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 726.667 chr9 15837002 15837434 + 2.83333 NA intron (NM_001355547, intron 20 of 24) intron (NM_001355547, intron 20 of 24) 273240 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 457.667 chr1 35564802 35565233 + 2.83333 NA intron (NM_014284, intron 6 of 6) MIR|SINE|MIR 7218 NM_014284 23154 Hs.121870 NM_014284 ENSG00000020129 NCDN - neurochondrin protein-coding 588.501-2 chr8 118746864 118747270 + 2.83333 NA Intergenic Zaphod3|DNA|hAT-Tip100 -125104 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 384.167 chr10 99658859 99659472 + 2.83333 NA promoter-TSS (NM_001349963) promoter-TSS (NM_001349963) -344 NM_020354 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 689.5-3 chr2 43877635 43878520 + 2.83333 NA 3' UTR (NM_022437, exon 13 of 13) 3' UTR (NM_022437, exon 13 of 13) 39106 NM_001357321 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 618.167-3 chr8 61468876 61469369 + 2.83333 NA intron (NM_173519, intron 5 of 5) L2b|LINE|L2 181152 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 416 chr1 48677234 48677523 + 2.83333 NA intron (NM_001323575, intron 6 of 12) intron (NM_001323575, intron 6 of 12) 99513 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 361.667-13 chr3 141012210 141012768 + 2.83333 NA Intergenic MLT1J|LTR|ERVL-MaLR -38858 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 767.333 chr3 158313297 158313759 + 2.83333 NA intron (NM_001271838, intron 5 of 9) intron (NM_001271838, intron 5 of 9) 203439 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 580.833 chr1 3619131 3619436 + 2.83333 NA Intergenic Intergenic -5732 NM_182752 127262 Hs.20529 NM_182752 ENSG00000158109 TPRG1L FAM79A|h-mover|mover tumor protein p63 regulated 1 like protein-coding 486.334-3 chr20 1340798 1341212 + 2.83333 NA intron (NR_040047, intron 1 of 2) Kanga11a|DNA|TcMar-Tc2 -11866 NM_080489 27111 Hs.657015 NM_015685 ENSG00000125775 SDCBP2 SITAC|SITAC18|ST-2|ST2 syndecan binding protein 2 protein-coding 735.5 chr11 77191688 77192410 + 2.83333 NA intron (NM_001127180, intron 30 of 48) intron (NM_001127180, intron 30 of 48) 63803 NM_000260 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 353.334-9 chr7 83657250 83657419 + 2.83333 NA Intergenic Intergenic -8195 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 955.666 chr9 133485895 133486775 + 2.83333 NA Intergenic MIRc|SINE|MIR -7236 NM_017585 11182 Hs.244378 NM_017585 ENSG00000160326 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 member 6 protein-coding 1225.17 chr16 12067479 12068480 + 2.83333 NA intron (NM_032167, intron 9 of 20) intron (NM_032167, intron 9 of 20) 91245 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 608.833-2 chr8 123160350 123160837 + 2.83333 NA intron (NM_001363151, intron 19 of 19) CpG -18454 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 1290.83 chr8 73174152 73175000 + 2.83333 NA Intergenic Intergenic -81404 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 541.5-5 chr18 77927925 77928273 + 2.83333 NA Intergenic L1MB3|LINE|L1 65628 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 715.167 chr7 6104410 6104950 + 2.83333 NA promoter-TSS (NM_001365764) promoter-TSS (NM_001365764) -269 NM_032172 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 778.499 chr3 127970938 127971572 + 2.83333 NA intron (NM_001370224, intron 5 of 6) MamGypLTR1b|LTR|Gypsy 56023 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 1340.67-2 chr7 3897252 3898229 + 2.83333 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -231945 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 906.499 chr13 106376509 106377115 + 2.83333 NA intron (NR_163477, intron 1 of 2) intron (NR_163477, intron 1 of 2) 248 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 721.5-2 chr2 104033192 104033602 + 2.83333 NA Intergenic Intergenic 374935 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 630.835 chr1 44378125 44378653 + 2.83333 NA Intergenic Intergenic -23110 NM_001301700 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 471.168 chr11 50371343 50371665 + 2.83333 NA Intergenic ALR/Alpha|Satellite|centr -37643 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 487.833-4 chr6 116217896 116218324 + 2.83333 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) 35965 NM_021648 23270 Hs.284141 NM_021648 ENSG00000187189 TSPYL4 dJ486I3.2 TSPY like 4 protein-coding 384.667-3 chr12 118181670 118181937 + 2.83333 NA intron (NM_001346490, intron 15 of 21) MIRb|SINE|MIR 8732 NM_001346497 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 398.833-8 chr3 111976161 111976368 + 2.83333 NA 3' UTR (NM_001134438, exon 18 of 18) 3' UTR (NM_001134438, exon 18 of 18) -2762 NM_001272069 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 250.666-6 chr4 93837930 93838088 + 2.83333 NA Intergenic Intergenic 9256 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 620.166 chr6 147382714 147383172 + 2.83333 NA exon (NM_001127715, exon 27 of 28) exon (NM_001127715, exon 27 of 28) -125747 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 252.833-12 chr4 134125067 134125179 + 2.83333 NA Intergenic Intergenic 76666 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 504.834-3 chr8 125644781 125645170 + 2.83333 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat 212766 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 397-12 chr3 112630337 112630589 + 2.83333 NA intron (NM_199512, intron 2 of 7) intron (NM_199512, intron 2 of 7) 10680 NM_199512 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 1103.17 chr2 1140222 1141015 + 2.83333 NA intron (NM_018968, intron 6 of 16) intron (NM_018968, intron 6 of 16) -189226 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 257.5-32 chr9 119963967 119964085 + 2.83333 NA Intergenic Intergenic 28966 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 504.334-2 chr3 137105318 137105821 + 2.83333 NA Intergenic Intergenic 147586 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 577.333 chr21 20494741 20495050 + 2.83333 NA Intergenic THE1C|LTR|ERVL-MaLR -236210 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 423.5-2 chr15 45204505 45204749 + 2.83333 NA Intergenic MARNA|DNA|TcMar-Mariner -3511 NM_138356 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 1373.17-2 chr15 56496143 56497115 + 2.83333 NA Intergenic Intergenic -31492 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 827.167-2 chr16 10963778 10964253 + 2.83333 NA intron (NM_015226, intron 3 of 22) intron (NM_015226, intron 3 of 22) 19451 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 441.001 chr10 66747349 66747785 + 2.83333 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -178469 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 580.5-2 chr3 58321136 58321587 + 2.83333 NA 3' UTR (NM_007042, exon 6 of 6) 3' UTR (NM_007042, exon 6 of 6) -11529 NM_001349520 54899 Hs.190544 NM_017771 ENSG00000168297 PXK MONAKA|SLOB PX domain containing serine/threonine kinase like protein-coding 348.167-8 chr3 170486264 170486462 + 2.83333 NA exon (NM_020949, exon 5 of 8) exon (NM_020949, exon 5 of 8) 19078 NR_135555 101928583 Hs.407600 NR_135555 ENSG00000285051 SLC7A14-AS1 - SLC7A14 antisense RNA 1 ncRNA 563.666 chr6 63089556 63089819 + 2.83333 NA Intergenic Intergenic 230290 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 478-2 chr17 30339801 30340388 + 2.83333 NA Intergenic MIRb|SINE|MIR -6037 NM_001319942 388364 Hs.371005 NM_206832 ENSG00000182271 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 492.834 chr4 177339912 177340168 + 2.83333 NA intron (NM_018248, intron 5 of 9) intron (NM_018248, intron 5 of 9) 30166 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 641.834 chr10 48656134 48656661 + 2.83333 NA promoter-TSS (NR_045675) promoter-TSS (NR_045675) -132 NR_045675 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 427-7 chr2 81264206 81264454 + 2.83333 NA Intergenic Intergenic 202616 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1344-2 chr7 38374241 38375183 + 2.83333 NA intron (NR_040085, intron 3 of 3) intron (NR_040085, intron 3 of 3) 33135 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 923.5 chr12 120686381 120686988 + 2.83333 NA promoter-TSS (NM_001303628) promoter-TSS (NM_001303628) -465 NM_014730 9761 Hs.744910 NM_014730 ENSG00000110917 MLEC KIAA0152 malectin protein-coding 322.667-2 chr1 212285110 212285331 + 2.83333 NA promoter-TSS (NR_125984) promoter-TSS (NR_125984) -190 NM_006243 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 708.833-2 chr8 33421278 33421613 + 2.83333 NA intron (NM_032664, intron 3 of 4) intron (NM_032664, intron 3 of 4) 51701 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 887.666 chr11 64148527 64149036 + 2.83333 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) 17332 NM_014067 28992 Hs.602898 NM_014067 ENSG00000133315 MACROD1 LRP16 mono-ADP ribosylhydrolase 1 protein-coding 934.667 chr19 7799513 7800422 + 2.83333 NA Intergenic HERVKC4-int|LTR|ERVK 12483 NR_002931 440508 Hs.568222 NR_002931 CLEC4GP1 - C-type lectin domain family 4 member G pseudogene 1 pseudo 1074.17 chr3 130893004 130893496 + 2.83333 NA promoter-TSS (NM_001199183) promoter-TSS (NM_001199183) -765 NM_001001485 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 778.833 chr2 174341434 174341775 + 2.83333 NA Intergenic CpG 6650 NM_001145250 100131390 NM_001145250 ENSG00000217236 SP9 ZNF990 Sp9 transcription factor protein-coding 921.334-2 chr3 40178723 40179453 + 2.83333 NA intron (NR_033965, intron 2 of 2) intron (NR_033965, intron 2 of 2) 79077 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 708.5-2 chr17 8746383 8746805 + 2.83333 NA TTS (NM_001128076) TTS (NM_001128076) -1758 NM_144681 146849 Hs.121438 NM_144681 ENSG00000161973 CCDC42 CCDC42A coiled-coil domain containing 42 protein-coding 857.666 chr3 96862710 96863696 + 2.83333 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 48609 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 287.333-14 chr5 121807707 121807900 + 2.83333 NA Intergenic Intergenic -44079 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 953.833 chr10 69914782 69915306 + 2.83333 NA intron (NM_080801, intron 16 of 38) intron (NM_080801, intron 16 of 38) 113138 NM_001320951 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 788.333 chr11 44616817 44617410 + 2.83333 NA intron (NM_001024844, intron 6 of 8) intron (NM_001024844, intron 6 of 8) 51450 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 985.667 chr2 112582219 112582726 + 2.83333 NA Intergenic Intergenic -1975 NM_001304353 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|CHTM1|MIC14|MIX14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 484.166-4 chr17 62998007 62998191 + 2.83333 NA intron (NM_025185, intron 1 of 25) L1PA14|LINE|L1 31864 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 576.167 chr11 66958356 66958799 + 2.83333 NA promoter-TSS (NM_000920) promoter-TSS (NM_000920) -194 NM_000920 5091 Hs.89890 NM_000920 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 531.333 chr1 46406474 46406766 + 2.83333 NA intron (NM_001441, intron 7 of 14) AluYm1|SINE|Alu 12303 NM_001441 2166 Hs.720143 NM_001441 ENSG00000117480 FAAH FAAH-1|PSAB fatty acid amide hydrolase protein-coding 688.5-3 chr6 125307516 125308044 + 2.83333 NA Intergenic Intergenic -5813 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 463.166 chr4 54595733 54596275 + 2.83333 NA Intergenic LTR16A|LTR|ERVL 11127 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 619.833-2 chr17 35141729 35142766 + 2.83333 NA promoter-TSS (NM_001014445) promoter-TSS (NM_001014445) 4 NM_001014445 54475 Hs.85570 NM_018096 ENSG00000073536 NLE1 NLE notchless homolog 1 protein-coding 608.834-4 chr3 116179961 116180426 + 2.83333 NA intron (NM_001318915, intron 1 of 8) L2b|LINE|L2 -179831 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 711.333-3 chr9 126860001 126860600 + 2.83333 NA promoter-TSS (NM_001099270) promoter-TSS (NM_001099270) -339 NM_001099270 403341 Hs.177633 NM_203482 ENSG00000177125 ZBTB34 ZNF918 zinc finger and BTB domain containing 34 protein-coding 230.166-3 chr15 70475179 70475313 + 2.83333 NA Intergenic Intergenic 30682 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 529.833-2 chr2 160399067 160399477 + 2.83333 NA intron (NM_002897, intron 1 of 13) Charlie4z|DNA|hAT-Charlie 8610 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 547.5-2 chr2 5365860 5366298 + 2.83333 NA Intergenic Intergenic 325039 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 1231.33-2 chr5 150801191 150802013 + 2.83333 NA Intergenic MER5A|DNA|hAT-Charlie 23656 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 542.5 chr10 61607235 61607533 + 2.83333 NA Intergenic Intergenic -55545 NM_001366909 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 602.999 chr16 68237318 68237885 + 2.83333 NA Intergenic CpG-9862 -1474 NM_001365265 80004 Hs.436585 NM_024939 ENSG00000103067 ESRP2 RBM35B epithelial splicing regulatory protein 2 protein-coding 522.667-2 chr2 171722994 171723380 + 2.83333 NA intron (NM_001271787, intron 5 of 15) intron (NM_001271787, intron 5 of 15) 35432 NM_001271789 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 1101.33 chr12 38138442 38139163 + 2.83333 NA Intergenic CpG -177972 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1060.83-2 chr6 56592533 56593664 + 2.83333 NA intron (NM_001144770, intron 40 of 94) intron (NM_001144770, intron 40 of 94) 49791 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 565.666 chr12 40536163 40536451 + 2.83333 NA intron (NM_173600, intron 129 of 173) intron (NM_173600, intron 129 of 173) 142913 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 798.833-2 chr9 102507890 102508215 + 2.83333 NA Intergenic L1M5|LINE|L1 -11585 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 345.666 chr16 11618460 11618742 + 2.83333 NA Intergenic Intergenic -31135 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 1083.83-2 chr2 72862171 72862919 + 2.83333 NA Intergenic Intergenic -24863 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 952.834 chr8 72542245 72542903 + 2.83333 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 5349 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 1102.83-2 chr6 18503921 18504433 + 2.83333 NA Intergenic Intergenic -18570 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 597.333-3 chr17 41696183 41696414 + 2.83333 NA Intergenic Intergenic 7413 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 808.833 chr8 58701718 58702188 + 2.83333 NA Intergenic Intergenic -42100 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 920.5 chr14 74608634 74609512 + 2.83333 NA intron (NM_000428, intron 1 of 35) intron (NM_000428, intron 1 of 35) 3164 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 681.166 chr1 27332733 27333243 + 2.83333 NA intron (NM_032125, intron 3 of 5) intron (NM_032125, intron 3 of 5) -9034 NM_032872 84958 Hs.469175 NM_032872 ENSG00000142765 SYTL1 JFC1|SLP1 synaptotagmin like 1 protein-coding 510-4 chr2 97005524 97005871 + 2.83333 NA Intergenic Intergenic -19117 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 433.5-6 chr14 70622077 70622575 + 2.83333 NA intron (NR_110071, intron 2 of 2) L1M4|LINE|L1 18972 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 552.5-2 chr4 40998767 40999074 + 2.83333 NA intron (NM_004307, intron 6 of 17) Tigger7|DNA|TcMar-Tigger -141728 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 1643 chr5 73215542 73216525 + 2.83333 NA Intergenic CpG -14072 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 660.5 chr2 119208755 119209387 + 2.83333 NA Intergenic Intergenic -14763 NM_001008410 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 544.666-3 chr21 28965178 28965446 + 2.83333 NA intron (NM_001320766, intron 10 of 28) intron (NM_001320766, intron 10 of 28) 27565 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 577.167-2 chr15 61543472 61543726 + 2.83333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -186319 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 503.333-3 chr4 132642455 132642746 + 2.83333 NA intron (NR_126401, intron 1 of 3) intron (NR_126401, intron 1 of 3) 51511 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 327.167-10 chr8 121012558 121012760 + 2.83333 NA Intergenic Intergenic -200613 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 1369.17 chr2 108194363 108195885 + 2.83333 NA intron (NR_131251, intron 1 of 4) intron (NR_131251, intron 1 of 4) 22717 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 733.999 chr12 114476109 114476605 + 2.83333 NA Intergenic MER91B|DNA|hAT-Tip100 -67915 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 234.333-15 chr2 58448181 58448311 + 2.83333 NA Intergenic L2c|LINE|L2 -72507 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 1262.83-2 chr7 27784349 27785369 + 2.83333 NA intron (NM_001362794, intron 5 of 16) AluJo|SINE|Alu 44764 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 398.333-16 chr8 112768839 112769121 + 2.83333 NA intron (NM_001363185, intron 11 of 66) L2|LINE|L2 125487 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 477.834-2 chr10 119859418 119859827 + 2.83333 NA intron (NM_024834, intron 2 of 15) intron (NM_024834, intron 2 of 15) 13261 NM_001256378 79892 Hs.124246 NM_024834 ENSG00000197771 MCMBP C10orf119|MCM-BP minichromosome maintenance complex binding protein protein-coding 835.166-2 chr5 39080468 39081178 + 2.83333 NA Intergenic Intergenic -6424 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 421.167 chr1 46477545 46477805 + 2.83333 NA Intergenic Intergenic -12161 NM_172225 127343 Hs.375623 NM_147192 ENSG00000197587 DMBX1 MBX|OTX3|PAXB diencephalon/mesencephalon homeobox 1 protein-coding 993.834 chr22 31976929 31977621 + 2.83333 NA intron (NR_149128, intron 2 of 4) AluSp|SINE|Alu 6452 NR_149128 105372999 Hs.512525 NR_149128 LINC02558 - long intergenic non-protein coding RNA 2558 ncRNA 1027.17 chr12 107607488 107607990 + 2.83333 NA intron (NM_001018072, intron 4 of 16) intron (NM_001018072, intron 4 of 16) 26865 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 255-24 chr4 29280564 29280735 + 2.83333 NA Intergenic Intergenic 66357 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 1326.33-2 chr14 65959053 65960064 + 2.83333 NA Intergenic Intergenic 488456 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 454.499-2 chr4 46039214 46039485 + 2.83333 NA 3' UTR (NM_173536, exon 9 of 9) 3' UTR (NM_173536, exon 9 of 9) 84705 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 1004.33 chr6 44655234 44655731 + 2.83333 NA Intergenic Intergenic -103601 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 702.333 chr9 99807206 99807827 + 2.83333 NA intron (NR_109802, intron 1 of 6) intron (NR_109802, intron 1 of 6) 12373 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 221-29 chr5 45639243 45639332 + 2.83333 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 57093 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 586-3 chr13 97799757 97800520 + 2.83333 NA Intergenic Intergenic -153537 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 695-2 chr13 100235086 100235648 + 2.83333 NA intron (NR_148031, intron 7 of 22) intron (NR_148031, intron 7 of 22) 146274 NR_148030 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 891.166-2 chr11 93196833 93197485 + 2.83333 NA intron (NM_152313, intron 1 of 10) intron (NM_152313, intron 1 of 10) 267 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 451.166 chr5 151116513 151116737 + 2.83333 NA intron (NM_001193544, intron 19 of 24) L2a|LINE|L2 25059 NM_001193544 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 486.666-3 chr3 30779265 30779900 + 2.83333 NA intron (NM_207359, intron 13 of 14) MADE1|DNA|TcMar-Mariner 115079 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 258.167-13 chr16 74275192 74275555 + 2.83333 NA Intergenic Intergenic -21441 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 548 chr1 78145006 78145302 + 2.83333 NA Intergenic Intergenic -84445 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 487.834-3 chr3 133543493 133543832 + 2.83333 NA Intergenic MLT1C|LTR|ERVL-MaLR -30024 NM_001134422 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 411.499-2 chr3 191051748 191052076 + 2.83333 NA Intergenic Intergenic -147329 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 410.166-4 chr9 29878556 29878753 + 2.83333 NA Intergenic Intergenic 529800 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 588.5-2 chr8 71819568 71820324 + 2.83333 NA Intergenic Intergenic -23177 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 257.167-3 chr14 56282614 56282782 + 2.83333 NA intron (NM_021255, intron 3 of 5) intron (NM_021255, intron 3 of 5) 164287 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 594.333 chr11 2531338 2531811 + 2.83333 NA intron (NM_181798, intron 2 of 15) intron (NM_181798, intron 2 of 15) 70120 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 434.166 chr2 75979417 75979678 + 2.83333 NA Intergenic L1PA7|LINE|L1 -268632 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 645.833-3 chr8 109720312 109720673 + 2.83333 NA Intergenic Intergenic -28701 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 915.166 chr1 151280875 151281437 + 2.83333 NA promoter-TSS (NM_001304764) promoter-TSS (NM_001304764) -366 NM_001304764 57592 Hs.186756 NM_020832 ENSG00000143373 ZNF687 PDB6 zinc finger protein 687 protein-coding 263.666-3 chr22 27987691 27987788 + 2.83333 NA intron (NM_001145418, intron 21 of 22) intron (NM_001145418, intron 21 of 22) -67127 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 941.667 chr6 123802306 123802789 + 2.83333 NA Intergenic Intergenic -1299 NM_153355 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 824.666 chr1 33632703 33633510 + 2.83333 NA intron (NM_052896, intron 32 of 69) L1ME4a|LINE|L1 160461 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 419-11 chr3 172808927 172809395 + 2.83333 NA intron (NM_001349095, intron 22 of 25) L3|LINE|CR1 58159 NM_001349096 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 400-10 chr6 132669733 132670050 + 2.83333 NA Intergenic Intergenic -23865 NM_138327 134864 Hs.375030 NM_138327 ENSG00000146399 TAAR1 TA1|TAR1|TRAR1 trace amine associated receptor 1 protein-coding 858.499 chr3 108552399 108552965 + 2.83333 NA intron (NM_020890, intron 19 of 20) intron (NM_020890, intron 19 of 20) -23360 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 456.666 chr7 102991581 102991999 + 2.83333 NA intron (NR_105043, intron 7 of 20) intron (NR_105043, intron 7 of 20) 18360 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 504.833 chr15 86361718 86361956 + 2.83333 NA intron (NM_152336, intron 17 of 24) L1MA9|LINE|L1 -44869 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 461.667-2 chr2 219406934 219407348 + 2.83333 NA Intergenic L3b|LINE|CR1 -7134 NM_001319116 23549 Hs.258551 NM_012100 ENSG00000123992 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 706.333 chr11 65366016 65366706 + 2.83333 NA Intergenic AluSx1|SINE|Alu 11610 NM_145719 220359 Hs.632121 NM_145719 ENSG00000173825 TIGD3 - tigger transposable element derived 3 protein-coding 474.5-2 chr10 21993033 21993310 + 2.83333 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 10559 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 437.666-2 chr1 236619627 236619848 + 2.83333 NA Intergenic Intergenic -15221 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 1459 chr2 191811468 191812543 + 2.83333 NA intron (NR_157850, intron 3 of 4) intron (NR_157850, intron 3 of 4) 19165 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 324-15 chr5 55921868 55922029 + 2.83333 NA intron (NM_001242637, intron 15 of 15) intron (NM_001242637, intron 15 of 15) 68626 NM_001242636 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 779.667 chr12 53352394 53353040 + 2.83333 NA Intergenic Intergenic -7924 NM_001300837 121340 Hs.209402 NM_152860 ENSG00000170374 SP7 OI11|OI12|OSX|osterix Sp7 transcription factor protein-coding 541.833-3 chr19 12760513 12761124 + 2.83333 NA Intergenic L2a|LINE|L2 9027 NM_017682 54831 Hs.435611 NM_017682 ENSG00000039987 BEST2 VMD2L1 bestrophin 2 protein-coding 447.833-4 chr7 52655741 52656036 + 2.83333 NA Intergenic Intergenic -379745 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 1162.5 chr11 103035573 103036440 + 2.83333 NA Intergenic MLT1B|LTR|ERVL-MaLR 56154 NM_001318740 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 1235.83 chr18 7789487 7790269 + 2.83333 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 222562 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 370.666-2 chr10 25713325 25713691 + 2.83333 NA intron (NR_108067, intron 3 of 4) AluSq|SINE|Alu 61796 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 421.999-2 chr10 30449052 30449274 + 2.83333 NA intron (NM_001244134, intron 3 of 7) L1ME3A|LINE|L1 14517 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 498.833 chr12 126640427 126640666 + 2.83333 NA Intergenic L1PA6|LINE|L1 49772 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 331.666-3 chr5 55188649 55188891 + 2.83333 NA Intergenic Intergenic -15593 NM_001145734 166979 Hs.669184 NM_152623 ENSG00000164287 CDC20B G6VTS76519 cell division cycle 20B protein-coding 909.834 chr1 233440786 233441520 + 2.83333 NA Intergenic Intergenic 113429 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 527.334-2 chr14 45167534 45167842 + 2.83333 NA TTS (NM_001308134) TTS (NM_001308134) 31749 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 637.166 chr7 101192448 101192954 + 2.83333 NA Intergenic Intergenic 8335 NM_001287147 346606 Hs.512217 NM_178176 ENSG00000106384 MOGAT3 DC7|DGAT2L2|MGAT3 monoacylglycerol O-acyltransferase 3 protein-coding 731.334-2 chr6 73326552 73327036 + 2.83333 NA Intergenic Intergenic -16429 NR_027005 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 527 chr12 48936283 48936795 + 2.83333 NA 3' UTR (NM_001659, exon 5 of 5) 3' UTR (NM_001659, exon 5 of 5) -10992 NM_001143782 51303 Hs.655103 NM_016594 ENSG00000134285 FKBP11 FKBP19 FKBP prolyl isomerase 11 protein-coding 1218.83-2 chr6 143575165 143575932 + 2.83333 NA Intergenic Intergenic -6209 NR_027113 285740 Hs.432656 NR_027113 ENSG00000235740 PHACTR2-AS1 - PHACTR2 antisense RNA 1 ncRNA 619.5-4 chr6 27518470 27518942 + 2.83333 NA Intergenic Intergenic -45588 NM_007149 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 348.666 chr1 190850078 190850327 + 2.83333 NA Intergenic L1ME3|LINE|L1 225312 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 408.666 chr11 39864617 39864830 + 2.83333 NA Intergenic L1M4b|LINE|L1 428407 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 164.833-24 chrX 81174487 81174565 + 2.83333 NA intron (NM_030763, intron 1 of 6) L2c|LINE|L2 27387 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 697.667 chr1 156728420 156728819 + 2.83333 NA promoter-TSS (NM_001303095) promoter-TSS (NM_001303095) 147 NM_001370151 81875 Hs.301904 NM_030980 ENSG00000143319 ISG20L2 HSD38 interferon stimulated exonuclease gene 20 like 2 protein-coding 591.334-3 chr20 46681178 46681972 + 2.83333 NA intron (NM_001193340, intron 1 of 12) intron (NM_001193340, intron 1 of 12) 2910 NM_001193340 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 559.666 chr13 39144694 39145075 + 2.83333 NA Intergenic ERV24_Prim-int|LTR|ERV1 106428 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 970.666-2 chr21 14259428 14260100 + 2.83333 NA Intergenic ERVL-E-int|LTR|ERVL -14035 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 755.334 chr1 168082202 168082814 + 2.83333 NA 3' UTR (NM_001349634, exon 8 of 8) 3' UTR (NM_001349634, exon 8 of 8) 53928 NM_001267612 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 728-2 chr12 65300646 65301369 + 2.83333 NA intron (NM_001193461, intron 1 of 6) MLT1I|LTR|ERVL-MaLR 22020 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 618.334-2 chrX 115642667 115643105 + 2.83333 NA intron (NM_001136025, intron 9 of 15) intron (NM_001136025, intron 9 of 15) 49335 NM_001172335 5358 Hs.496622 NM_005032 ENSG00000102024 PLS3 BMND18|T-plastin plastin 3 protein-coding 1214.83 chr5 31232127 31233120 + 2.83333 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 38937 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 376.166 chr11 126440791 126441088 + 2.83333 NA intron (NM_001301097, intron 10 of 15) L2c|LINE|L2 34852 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 412.833-3 chr15 72199829 72200092 + 2.83333 NA intron (NM_182470, intron 10 of 10) intron (NM_182470, intron 10 of 10) -2173 NM_001012642 196996 Hs.596332 NM_001012642 ENSG00000175318 GRAMD2A GRAMD2 GRAM domain containing 2A protein-coding 419.001 chr2 44562882 44563169 + 2.83333 NA intron (NM_024766, intron 3 of 10) MIRb|SINE|MIR 201078 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 752.5-3 chr7 70698296 70698683 + 2.83333 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -433655 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 570-5 chr9 31097697 31098103 + 2.83333 NA Intergenic L1MD1|LINE|L1 283590 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 645.833-2 chr4 108834695 108834997 + 2.83333 NA intron (NR_045756, intron 27 of 35) intron (NR_045756, intron 27 of 35) -71793 NM_001146590 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 427.666 chr10 58152712 58153124 + 2.83333 NA Intergenic Intergenic 114976 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 656 chr12 816208 816859 + 2.83333 NA intron (NM_001184985, intron 2 of 27) AluJo|SINE|Alu 63610 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 716.668 chr11 110201114 110201742 + 2.83333 NA intron (NM_001260493, intron 14 of 15) intron (NM_001260493, intron 14 of 15) 95284 NM_001260496 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 724.333-3 chr3 69671066 69671688 + 2.83333 NA Intergenic Intergenic -68087 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 290.5-4 chr12 58877607 58877741 + 2.83333 NA exon (NM_001136051, exon 15 of 19) exon (NM_001136051, exon 15 of 19) 41872 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 265.333-9 chr17 52829370 52829469 + 2.83333 NA Intergenic Intergenic -32702 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 490.167-2 chr8 117398969 117399270 + 2.83333 NA Intergenic Intergenic -121594 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 509.833-5 chr4 12729325 12729949 + 2.83333 NA Intergenic Intergenic 506186 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 664.166-4 chr9 78601718 78602159 + 2.83333 NA Intergenic Intergenic 304813 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 695.167 chr5 33272026 33272557 + 2.83333 NA Intergenic Intergenic 42556 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 925 chr10 51001548 51002193 + 2.83333 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 10982 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 416.667-2 chr1 143698162 143698488 + 2.83333 NA Intergenic Intergenic 1294 NR_104078 101954269 NR_104078 ENSG00000207349 RNVU1-17 RNU1-127|vU1.17 RNA, variant U1 small nuclear 17 snRNA 454.667-3 chr10 131875013 131875352 + 2.83333 NA Intergenic Intergenic -25826 NR_033191 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 458-6 chr22 24521874 24522349 + 2.83333 NA intron (NM_016327, intron 8 of 9) intron (NM_016327, intron 8 of 9) 26779 NM_016327 51733 Hs.731656 NM_016327 ENSG00000100024 UPB1 BUP1 beta-ureidopropionase 1 protein-coding 755.667-2 chr1 228165671 228166197 + 2.83333 NA promoter-TSS (NR_103540) promoter-TSS (NR_103540) 130 NM_001010867 200205 Hs.237017 NM_001010867 ENSG00000181873 IBA57 C1orf69|MMDS3|SPG74 iron-sulfur cluster assembly factor IBA57 protein-coding 593.001-2 chr6 62543300 62543630 + 2.83333 NA Intergenic Intergenic -257238 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 775.167 chr4 161256574 161257140 + 2.83333 NA Intergenic HUERS-P3-int|LTR|ERV1 -765876 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 349.5-14 chr8 73180834 73181149 + 2.83333 NA Intergenic Intergenic 78511 NM_001243237 100130301 Hs.202296 NM_001243237 ENSG00000274443 C8orf89 - chromosome 8 open reading frame 89 protein-coding 177.5-26 chr17 73421131 73421223 + 2.83333 NA intron (NM_001144952, intron 15 of 44) L2b|LINE|L2 -92506 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 331.5-4 chr10 98349341 98349613 + 2.83333 NA Intergenic Intergenic 45830 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 433.166-2 chr11 42521966 42522291 + 2.83333 NA Intergenic L1M4|LINE|L1 -268438 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 954.167 chr10 28991432 28992232 + 2.83333 NA Intergenic Intergenic 145424 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 306-4 chr14 30912861 30912980 + 2.83333 NA intron (NM_001083893, intron 10 of 17) intron (NM_001083893, intron 10 of 17) -23112 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 432.833-4 chr5 94071514 94071805 + 2.83333 NA intron (NM_001163418, intron 1 of 8) L1MD2|LINE|L1 40004 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 699 chr1 39258590 39259107 + 2.83333 NA intron (NM_012090, intron 5 of 92) intron (NM_012090, intron 5 of 92) -150225 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 737.999 chr14 34672320 34672777 + 2.83333 NA Intergenic Intergenic 41269 NM_021914 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 629.833-4 chr2 28452446 28452915 + 2.83333 NA Intergenic Intergenic -43380 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 723.166 chr6 38871711 38872477 + 2.83333 NA intron (NM_001371, intron 48 of 91) LTR16A2|LTR|ERVL 81013 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 618.5 chr1 205374475 205374876 + 2.83333 NA intron (NR_038425, intron 1 of 3) intron (NR_038425, intron 1 of 3) 1423 NR_038425 284576 Hs.585440 NR_038425 ENSG00000226235 LEMD1-AS1 - LEMD1 antisense RNA 1 ncRNA 616.333-3 chr5 140401348 140401828 + 2.83333 NA promoter-TSS (NM_017978) promoter-TSS (NM_017978) -226 NM_020690 404734 Hs.594084 NM_020690 ENSG00000254996 ANKHD1-EIF4EBP3 MASK-BP3|MASK-BP3ARF ANKHD1-EIF4EBP3 readthrough protein-coding 411.333-6 chr13 94593443 94593708 + 2.83333 NA intron (NM_001304430, intron 2 of 11) intron (NM_001304430, intron 2 of 11) 2577 NR_130731 23483 Hs.12393 NM_014305 ENSG00000088451 TGDS CATMANS|SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 540.167-2 chr8 119707157 119707716 + 2.83333 NA Intergenic L2c|LINE|L2 -34046 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 582.166 chr16 68040385 68040987 + 2.83333 NA intron (NM_017803, intron 3 of 16) intron (NM_017803, intron 3 of 16) -16819 NM_018380 55794 Hs.458313 NM_018380 ENSG00000182810 DDX28 MDDX28 DEAD-box helicase 28 protein-coding 840 chr12 101323726 101324269 + 2.83333 NA intron (NM_014503, intron 25 of 61) AluSg|SINE|Alu 43892 NM_014503 27340 Hs.295732 NM_014503 ENSG00000120800 UTP20 1A6/DRIM|DRIM UTP20 small subunit processome component protein-coding 1296.83 chr17 65136826 65137758 + 2.83333 NA promoter-TSS (NM_001081955) promoter-TSS (NM_001081955) -46 NM_001165933 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 384.166-2 chr4 45751668 45751981 + 2.83333 NA Intergenic Intergenic 372230 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 765.5 chr10 52491963 52492577 + 2.83333 NA Intergenic Intergenic -21737 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 392.667-7 chr6 93368106 93368364 + 2.83333 NA intron (NM_004440, intron 3 of 16) intron (NM_004440, intron 3 of 16) 51324 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 402.666-4 chr21 19093721 19094020 + 2.83333 NA Intergenic MER20|DNA|hAT-Charlie -334058 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 573.666 chr1 34598009 34598298 + 2.83333 NA Intergenic LTR88b|LTR|Gypsy? 71541 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 272-29 chr8 91535146 91535302 + 2.83333 NA Intergenic MLT1J2|LTR|ERVL-MaLR 285905 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 487.166 chr16 84177093 84177311 + 2.83333 NA TTS (NM_001243159) TTS (NM_001243159) 9855 NM_005679 9013 Hs.153022 NM_005679 ENSG00000103168 TAF1C MGC:39976|SL1|TAFI110|TAFI95 TATA-box binding protein associated factor, RNA polymerase I subunit C protein-coding 704.5 chr3 46935569 46936192 + 2.83333 NA intron (NM_144716, intron 3 of 7) L1MD|LINE|L1 40621 NR_102269 151903 Hs.631918 NM_144716 ENSG00000160799 CCDC12 - coiled-coil domain containing 12 protein-coding 1064.67-4 chr3 163951045 163952015 + 2.83333 NA Intergenic Intergenic 220026 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 558 chr19 5987135 5987490 + 2.83333 NA intron (NR_046376, intron 1 of 3) L1MC4a|LINE|L1 8909 NR_046376 100128568 Hs.624525 NR_046376 ENSG00000266983 LOC100128568 - uncharacterized LOC100128568 ncRNA 773.666 chr10 89213231 89213712 + 2.83333 NA TTS (NM_001288979) TTS (NM_001288979) -6154 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 435.166-5 chr7 9991372 9991682 + 2.83333 NA Intergenic Intergenic 357257 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 965.001 chr18 2223824 2224483 + 2.83333 NA Intergenic Intergenic 347352 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 338.333-13 chr9 36633568 36633879 + 2.83333 NA intron (NM_001256691, intron 8 of 15) Charlie1a|DNA|hAT-Charlie 60828 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 670.333-3 chr8 118503005 118504105 + 2.83333 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -117446 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 278.333-15 chr2 124114241 124114430 + 2.83333 NA intron (NM_130773, intron 1 of 23) L1M5|LINE|L1 89048 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 264.5-20 chr4 186014432 186014550 + 2.83333 NA Intergenic Intergenic -54664 NM_003265 7098 Hs.657724 NM_003265 ENSG00000164342 TLR3 CD283|IIAE2 toll like receptor 3 protein-coding 860.001 chr4 39976385 39977217 + 2.83333 NA intron (NM_001100399, intron 1 of 32) CpG 1110 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 688.166-2 chr17 28318731 28319582 + 2.83333 NA promoter-TSS (NM_014573) promoter-TSS (NM_014573) -44 NM_014573 27346 Hs.199695 NM_014573 ENSG00000109084 TMEM97 MAC30 transmembrane protein 97 protein-coding 469.833 chr12 133181149 133181538 + 2.83333 NA promoter-TSS (NM_001165882) promoter-TSS (NM_001165882) -152 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 563.834-4 chr9 98074168 98075267 + 2.83333 NA intron (NM_018946, intron 2 of 5) intron (NM_018946, intron 2 of 5) 17985 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 598.834 chr4 95510030 95510572 + 2.83333 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 38672 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 264.333-29 chr9 99123727 99123853 + 2.83333 NA intron (NM_004612, intron 1 of 8) intron (NM_004612, intron 1 of 8) 18677 NM_001306210 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 434.5-2 chr20 15863105 15863397 + 2.83333 NA intron (NM_001351663, intron 9 of 17) intron (NM_001351663, intron 9 of 17) 60063 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 298-16 chr5 133979711 133980069 + 2.83333 NA intron (NM_003374, intron 6 of 8) L1ME1|LINE|L1 11201 NR_134247 105379183 Hs.543907 NR_134247 LOC105379183 - uncharacterized LOC105379183 ncRNA 417.166-6 chr19 7651947 7652243 + 2.83333 NA Intergenic Intergenic 14985 NM_001127396 6813 Hs.515104 NM_006949 ENSG00000076944 STXBP2 FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122 syntaxin binding protein 2 protein-coding 888.167-2 chr21 26717046 26717668 + 2.83333 NA Intergenic Intergenic 128052 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 253-2 chr1 155530223 155530361 + 2.83333 NA intron (NM_018489, intron 1 of 27) L2a|LINE|L2 -31750 NR_147963 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 1065.33 chr12 11553516 11554414 + 2.83333 NA non-coding (NR_033890, exon 5 of 8) non-coding (NR_033890, exon 5 of 8) 5935 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 464.5-3 chr10 132376930 132377211 + 2.83333 NA 3' UTR (NM_030626, exon 11 of 11) 3' UTR (NM_030626, exon 11 of 11) -20130 NM_001098637 170394 Hs.527751 NM_138499 ENSG00000171813 PWWP2B PWWP2|bA432J24.1|pp8607 PWWP domain containing 2B protein-coding 396.666-8 chrX 131830722 131831076 + 2.83333 NA promoter-TSS (NR_152876) promoter-TSS (NR_152876) -256 NR_026975 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 871.166 chr6 127516369 127517107 + 2.83333 NA intron (NM_001012279, intron 1 of 11) intron (NM_001012279, intron 1 of 11) 2286 NM_001012279 387104 Hs.319247 NM_001012279 ENSG00000255330 SOGA3 C6orf174|dJ403A15.3 SOGA family member 3 protein-coding 1029.83-2 chr12 63419870 63420638 + 2.83333 NA Intergenic Intergenic 248239 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 557.5-2 chr3 71729840 71730272 + 2.83333 NA promoter-TSS (NM_001134650) promoter-TSS (NM_001134650) -938 NM_001134650 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 819.5-5 chr8 26329574 26329953 + 2.83333 NA intron (NM_001177591, intron 2 of 9) intron (NM_001177591, intron 2 of 9) 36547 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 429.833-2 chr10 83917426 83918070 + 2.83333 NA Intergenic Intergenic -221761 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 606.667 chr11 94786253 94786919 + 2.83333 NA intron (NM_001301007, intron 1 of 11) (TTCTTTT)n|Simple_repeat|Simple_repeat 18230 NM_130847 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 798.501 chr13 101941560 101942191 + 2.83333 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -25230 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 505.167 chr1 26144963 26145540 + 2.83333 NA Intergenic Intergenic -13828 NM_024869 79927 Hs.694119 NM_024869 ENSG00000197245 FAM110D GRRP1 family with sequence similarity 110 member D protein-coding 858.333 chr6 148179757 148180262 + 2.83333 NA Intergenic Intergenic -92319 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 411.667-6 chr2 69437425 69437744 + 2.83333 NA promoter-TSS (NM_015700) promoter-TSS (NM_015700) 44 NM_001002756 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 840.666 chr5 148957584 148958195 + 2.83333 NA Intergenic Intergenic 104520 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 604.333 chr1 17059601 17059857 + 2.83333 NA Intergenic MIRb|SINE|MIR -5559 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 683.333-2 chr11 27158777 27159442 + 2.83333 NA intron (NR_125767, intron 2 of 4) intron (NR_125767, intron 2 of 4) 59659 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 713.833 chr10 13586043 13586822 + 2.83333 NA promoter-TSS (NM_003675) promoter-TSS (NM_003675) -533 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 708 chr17 8158687 8159184 + 2.83333 NA TTS (NM_001330125) TTS (NM_001330125) 3941 NM_001330125 6844 Hs.25348 NM_014232 ENSG00000220205 VAMP2 SYB2|VAMP-2 vesicle associated membrane protein 2 protein-coding 544.167-3 chr2 74197851 74198641 + 2.83333 NA promoter-TSS (NR_027405) promoter-TSS (NR_027405) -317 NR_027405 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 332.666-3 chr8 75964485 75964657 + 2.83333 NA Intergenic Intergenic 424603 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 407.5-14 chr7 113081068 113081345 + 2.83333 NA 3' UTR (NM_018970, exon 3 of 3) 3' UTR (NM_018970, exon 3 of 3) 5132 NM_001146266 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 419.5 chr1 224852808 224853185 + 2.83333 NA Intergenic (TATGTACG)n|Simple_repeat|Simple_repeat -76658 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 233.333-3 chr10 86710994 86711324 + 2.83333 NA intron (NM_001368066, intron 10 of 14) CpG 42595 NM_001080116 11155 Hs.657271 NM_007078 ENSG00000122367 LDB3 CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP LIM domain binding 3 protein-coding 520.5 chr15 50314596 50314813 + 2.83333 NA intron (NM_016654, intron 1 of 8) MER20B|DNA|hAT-Charlie -39470 NR_024490 100129387 Hs.659360 NR_024490 GABPB1-AS1 - GABPB1 antisense RNA 1 ncRNA 1316 chr7 27744843 27746078 + 2.83333 NA intron (NM_001362794, intron 1 of 16) intron (NM_001362794, intron 1 of 16) 5365 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 226.167-2 chr1 109498073 109498535 + 2.83333 NA 3' UTR (NM_001134402, exon 2 of 2) 3' UTR (NM_001134402, exon 2 of 2) 4210 NM_001134404 284613 Hs.514682 NM_182580 ENSG00000174151 CYB561D1 - cytochrome b561 family member D1 protein-coding 355.667-5 chr19 39078624 39078816 + 2.83333 NA Intergenic Intergenic -5648 NM_001004318 390928 Hs.448934 NM_001004318 ENSG00000183760 ACP7 PAPL|PAPL1 acid phosphatase 7, tartrate resistant (putative) protein-coding 606.5 chr1 211474681 211475190 + 2.83333 NA Intergenic Intergenic 17982 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 550-4 chr2 177161908 177162278 + 2.83333 NA Intergenic Intergenic 50318 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 1700.83 chr11 118927738 118928888 + 2.83333 NA Intergenic Intergenic 17605 NR_039713 100616376 NR_039713 ENSG00000264211 MIR4492 mir-4492 microRNA 4492 ncRNA 264.5-11 chr19 13718828 13718946 + 2.83333 NA Intergenic Intergenic -12865 NM_001320565 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 545.499 chr17 49585636 49585921 + 2.83333 NA Intergenic Intergenic 9907 NM_007225 11248 Hs.55069 NM_007225 ENSG00000182575 NXPH3 NPH3 neurexophilin 3 protein-coding 378.166-3 chr10 68473384 68473640 + 2.83333 NA Intergenic Intergenic -1391 NR_102264 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 921.333-3 chr2 225665159 225665769 + 2.83333 NA intron (NM_001371273, intron 7 of 7) intron (NM_001371273, intron 7 of 7) 264578 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 814.666 chr20 43187886 43188376 + 2.83333 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 1775 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 767.667-2 chr3 901944 902574 + 2.83333 NA Intergenic L1MA6|LINE|L1 -190765 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 300.333-8 chr4 75577310 75577439 + 2.83333 NA 3' UTR (NM_001330724, exon 14 of 14) 3' UTR (NM_001330724, exon 14 of 14) 21308 NM_001206981 152816 Hs.24510 NM_178497 ENSG00000174792 ODAPH AI2A4|C4orf26 odontogenesis associated phosphoprotein protein-coding 561.833 chr2 231900260 231900901 + 2.83333 NA Intergenic CpG -8282 NR_031717 100302126 NR_031717 ENSG00000222246 MIR1471 MIRN1471|hsa-mir-1471 microRNA 1471 ncRNA 405.333-6 chr17 67691697 67691924 + 2.83333 NA intron (NM_181671, intron 9 of 9) AluJo|SINE|Alu -26023 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 1349.5 chr15 65400968 65401748 + 2.83333 NA intron (NM_020962, intron 4 of 19) MIR3|SINE|MIR 21589 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 461-3 chr15 96355913 96356241 + 2.83333 NA Intergenic Intergenic 22312 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 349.167-9 chr7 4051015 4051255 + 2.83333 NA intron (NM_152744, intron 18 of 44) (TATATAT)n|Simple_repeat|Simple_repeat -78550 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 464.333-8 chr7 121547289 121547823 + 2.83333 NA Intergenic Intergenic -151188 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 646.499 chr1 39816701 39817045 + 2.83333 NA Intergenic MIR|SINE|MIR 27897 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 746.168 chr17 28494666 28495321 + 2.83333 NA intron (NM_001145975, intron 9 of 11) intron (NM_001145975, intron 9 of 11) -11355 NM_001369369 8456 Hs.58611 NM_003593 ENSG00000109101 FOXN1 FKHL20|RONU|WHN forkhead box N1 protein-coding 290.834-7 chr2 184902733 184902961 + 2.83333 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 264225 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 602.666-2 chr3 171566953 171567328 + 2.83333 NA Intergenic Intergenic -106732 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 603.333-2 chr8 85054387 85054898 + 2.83333 NA Intergenic Intergenic -52596 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 467.833-4 chr16 87871603 87872027 + 2.83333 NA Intergenic Intergenic -2308 NM_003486 8140 Hs.513797 NM_003486 ENSG00000103257 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16 solute carrier family 7 member 5 protein-coding 624.167 chr21 24896055 24896603 + 2.83333 NA intron (NR_046198, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 55779 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 749.833 chr3 194633516 194633937 + 2.83333 NA promoter-TSS (NM_001166306) promoter-TSS (NM_001166306) -307 NM_001166305 93109 Hs.478729 NM_138399 ENSG00000145014 TMEM44 - transmembrane protein 44 protein-coding 636 chr13 59301010 59301331 + 2.83333 NA Intergenic L2a|LINE|L2 -711548 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 790.501 chr17 80865820 80866554 + 2.83333 NA intron (NM_001163034, intron 13 of 29) L1ME1|LINE|L1 -60555 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 814.166 chr5 96868523 96869254 + 2.83333 NA Intergenic Intergenic -7051 NM_001130140 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 853-2 chr9 75200631 75201501 + 2.83333 NA Intergenic Intergenic 112552 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 849.501 chr15 97755069 97755557 + 2.83333 NA intron (NR_024173, intron 1 of 1) intron (NR_024173, intron 1 of 1) 119116 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 627 chr1 6784785 6785321 + 2.83333 NA promoter-TSS (NR_149049) promoter-TSS (NR_149049) -73 NR_149049 110841581 NR_149049 CAMTA1-DT lncCAMTA1 CAMTA1 divergent transcript ncRNA 556.5-2 chr10 110056966 110057296 + 2.83333 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -48750 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 873.167-2 chr6 50655550 50656371 + 2.83333 NA Intergenic Intergenic -57584 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 350.167-9 chr21 27571837 27572181 + 2.83333 NA Intergenic Intergenic -150370 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 371.834-2 chr8 123058254 123058513 + 2.83333 NA Intergenic Intergenic -14324 NM_001363151 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 765.5-2 chr11 61531933 61532713 + 2.83333 NA intron (NM_001370211, intron 4 of 7) intron (NM_001370211, intron 4 of 7) 10553 NM_001370210 9066 Hs.131188 NM_004200 ENSG00000011347 SYT7 IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII synaptotagmin 7 protein-coding 444.833-3 chr16 3871993 3872276 + 2.83333 NA intron (NM_004380, intron 1 of 30) intron (NM_004380, intron 1 of 30) 7986 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 978.166 chr15 69394361 69395180 + 2.83333 NA intron (NM_001104554, intron 6 of 8) intron (NM_001104554, intron 6 of 8) -19579 NR_160296 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 753.332 chr14 64311829 64312149 + 2.83333 NA intron (NM_001291712, intron 2 of 13) L1MDa|LINE|L1 -17579 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 283.333-22 chr9 120755827 120756104 + 2.83333 NA Intergenic Intergenic 37451 NM_012164 26190 Hs.494985 NM_012164 ENSG00000119402 FBXW2 FBW2|Fwd2|Md6 F-box and WD repeat domain containing 2 protein-coding 557 chr1 55140343 55140758 + 2.83333 NA intron (NM_015306, intron 24 of 67) intron (NM_015306, intron 24 of 67) 74814 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 841.334 chr3 79032652 79033394 + 2.83333 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -13564 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 411.167 chr11 50732039 50732308 + 2.83333 NA Intergenic ALR/Alpha|Satellite|centr 323026 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 483-3 chr5 13976652 13977075 + 2.83333 NA Intergenic Intergenic -32383 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 560.333 chr12 25436125 25436731 + 2.83333 NA Intergenic Intergenic 116855 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 712.5-3 chr20 51335515 51336089 + 2.83333 NA Intergenic Intergenic 117175 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 1180.67 chr1 237863866 237864802 + 2.83333 NA intron (NR_027247, intron 2 of 11) LTR88a|LTR|Gypsy? 2159 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 485.666-2 chr3 48486314 48486486 + 2.83333 NA intron (NM_001272065, intron 2 of 5) (ATATATT)n|Simple_repeat|Simple_repeat -13242 NM_001272083 51246 Hs.414579 NM_016479 ENSG00000164054 SHISA5 SCOTIN shisa family member 5 protein-coding 1343.5 chr15 96356741 96357380 + 2.83333 NA Intergenic CpG 23295 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 353.667-2 chr1 152441038 152441278 + 2.83333 NA Intergenic Intergenic -26895 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 669.666 chr5 123545532 123546154 + 2.83333 NA intron (NM_001364150, intron 2 of 11) intron (NM_001364150, intron 2 of 11) 426 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 508.334-6 chr17 63621985 63622306 + 2.83333 NA promoter-TSS (NM_001363768) promoter-TSS (NM_001363768) -272 NM_001330431 4215 Hs.29282 NM_002401 ENSG00000198909 MAP3K3 MAPKKK3|MEKK3 mitogen-activated protein kinase kinase kinase 3 protein-coding 1168.67 chr10 52779930 52780704 + 2.83333 NA Intergenic Intergenic -8617 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 573.666-2 chr11 69801696 69802102 + 2.83333 NA Intergenic Intergenic 17517 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 370.333-7 chr20 49320476 49320785 + 2.83333 NA Intergenic MIRb|SINE|MIR 39947 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 346.833-7 chr4 45024379 45024602 + 2.83333 NA Intergenic Intergenic -297856 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 1166 chr5 149551420 149552483 + 2.83333 NA promoter-TSS (NM_001892) promoter-TSS (NM_001892) -512 NM_001025105 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 701.999 chr5 174793641 174794551 + 2.83333 NA Intergenic MIR|SINE|MIR 42362 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 505.666-2 chr9 35518184 35518420 + 2.83333 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) -20330 NM_001135999 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 761.999 chr8 115360338 115360764 + 2.83333 NA Intergenic L1MEd|LINE|L1 307462 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 880.5-2 chr6 130885076 130885796 + 2.83333 NA intron (NM_001350320, intron 9 of 15) intron (NM_001350320, intron 9 of 15) 58031 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 623.834 chr15 82108248 82108640 + 2.83333 NA Intergenic MIRb|SINE|MIR 19850 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 680.166 chr1 39192291 39192721 + 2.83333 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 108339 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 463.666-2 chr19 49937227 49937810 + 2.83333 NA Intergenic AluSx|SINE|Alu 4454 NR_039906 100616483 NR_039906 ENSG00000283842 MIR4751 - microRNA 4751 ncRNA 749.166 chr6 142692636 142693278 + 2.83333 NA Intergenic Intergenic -55068 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 363.833 chr12 113221220 113221698 + 2.83333 NA promoter-TSS (NM_001351346) promoter-TSS (NM_001351346) -5 NM_017901 53373 Hs.524763 NM_017901 ENSG00000186815 TPCN1 TPC1 two pore segment channel 1 protein-coding 819.5-3 chr5 142866340 142867259 + 2.83333 NA intron (NR_046680, intron 3 of 5) intron (NR_046680, intron 3 of 5) 2111 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 502.333 chr13 84238243 84238530 + 2.83333 NA intron (NR_046871, intron 1 of 6) intron (NR_046871, intron 1 of 6) 97784 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 683.333-3 chr7 278718 279005 + 2.83333 NA Intergenic Intergenic 86290 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 991-2 chr3 141962323 141962975 + 2.83333 NA intron (NM_006286, intron 8 of 10) AluSx|SINE|Alu 37738 NM_001178140 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 406.333-11 chrX 17888720 17888907 + 2.83333 NA Intergenic L1MD1|LINE|L1 -27476 NM_001172743 10742 Hs.446680 NM_021785 ENSG00000131831 RAI2 - retinoic acid induced 2 protein-coding 769.499 chr11 8813382 8814156 + 2.83333 NA intron (NM_005418, intron 3 of 22) intron (NM_005418, intron 3 of 22) -2434 NM_139157 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 973.167 chr5 62460443 62461100 + 2.83333 NA intron (NM_016338, intron 5 of 29) intron (NM_016338, intron 5 of 29) 41887 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 716.667 chr13 30865564 30866606 + 2.83333 NA Intergenic Intergenic -16477 NR_103813 440132 Hs.729493 NR_103813 ENSG00000236094 LINC00545 - long intergenic non-protein coding RNA 545 ncRNA 533.667 chr4 182938061 182938423 + 2.83333 NA Intergenic MLT1B|LTR|ERVL-MaLR -20765 NM_001351748 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 481-4 chr5 150435990 150436631 + 2.83333 NA Intergenic Intergenic 13429 NM_001025071 6208 Hs.744846 NM_005617 ENSG00000164587 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 849.834 chr8 24977643 24978257 + 2.83333 NA Intergenic Intergenic -21081 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 519.167-5 chr2 219119417 219119851 + 2.83333 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) 41231 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 516.5-5 chr4 77977360 77977750 + 2.83333 NA Intergenic L1M3|LINE|L1 -79768 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 548-5 chrX 23756276 23756507 + 2.83333 NA Intergenic Intergenic -13115 NM_001037171 23597 Hs.298885 NM_001033583 ENSG00000123130 ACOT9 ACATE2|CGI-16|MT-ACT48|MTACT48 acyl-CoA thioesterase 9 protein-coding 1419 chr1 182084506 182085330 + 2.83333 NA Intergenic Intergenic -23206 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 1372-3 chrX 85110847 85111828 + 2.83333 NA intron (NM_001367857, intron 2 of 7) intron (NM_001367857, intron 2 of 7) -2369 NM_001012980 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 917 chr11 17991728 17992222 + 2.83333 NA intron (NR_104040, intron 7 of 11) intron (NR_104040, intron 7 of 11) 21072 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 591.666-3 chr6 148177577 148177960 + 2.83333 NA Intergenic Intergenic -94560 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 588.999 chr5 58380626 58380882 + 2.83333 NA Intergenic MER41-int|LTR|ERV1 79332 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 462.666-3 chr16 84979270 84979592 + 2.83333 NA intron (NM_001145548, intron 5 of 8) intron (NM_001145548, intron 5 of 8) 32104 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 635.333-2 chr12 123801083 123801773 + 2.83333 NA exon (NM_207437, exon 15 of 78) exon (NM_207437, exon 15 of 78) 38933 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 770.666 chr2 176118911 176119377 + 2.83333 NA exon (NM_002148, exon 2 of 2) exon (NM_002148, exon 2 of 2) 2380 NM_002148 3236 Hs.123070 NM_002148 ENSG00000128710 HOXD10 HOX4|HOX4D|HOX4E|Hox-4.4 homeobox D10 protein-coding 373.833 chr14 25537616 25538086 + 2.83333 NA Intergenic Intergenic -487554 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 500.333 chr1 156212993 156213281 + 2.83333 NA TTS (NM_001286184) TTS (NM_001286184) 149 NM_007221 11243 Hs.530479 NM_007221 ENSG00000160783 PMF1 - polyamine modulated factor 1 protein-coding 582.333 chr4 36711574 36712039 + 2.83333 NA Intergenic MER5A1|DNA|hAT-Charlie -69906 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 491-10 chr5 147630485 147631105 + 2.83333 NA intron (NM_001282282, intron 13 of 20) Tigger19b|DNA|TcMar-Tigger 70801 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 1478.33 chr2 113136297 113137531 + 2.83333 NA Intergenic Intergenic 9316 NM_173842 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 960.832 chr9 71001919 71002405 + 2.83333 NA intron (NM_001366143, intron 1 of 25) L2b|LINE|L2 119459 NM_001366152 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 733.001 chr11 78646535 78647139 + 2.83333 NA Intergenic Intergenic -71973 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 910.333-2 chr8 6928070 6928955 + 2.83333 NA Intergenic Intergenic -2436 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin alpha 6 protein-coding 1889.67-2 chr3 161559168 161560506 + 2.83333 NA Intergenic Intergenic 63029 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 258.667-4 chr11 15258564 15259057 + 2.83333 NA Intergenic Intergenic 109708 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 1117.67 chr17 28952991 28953759 + 2.83333 NA Intergenic Intergenic -1857 NM_001290131 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 430.166 chr14 55401426 55401659 + 2.83333 NA intron (NM_014924, intron 1 of 9) intron (NM_014924, intron 1 of 9) 10316 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 456-8 chr6 38381911 38382115 + 2.83333 NA intron (NM_052893, intron 7 of 11) L1M4|LINE|L1 -99583 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 907.333 chr18 48023233 48023948 + 2.83333 NA Intergenic Intergenic -92444 NM_001135937 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 664.333 chr1 169546343 169546808 + 2.83333 NA exon (NM_000130, exon 11 of 25) exon (NM_000130, exon 11 of 25) 39956 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 1931.33 chr7 45921916 45923721 + 2.83333 NA Intergenic Intergenic -1546 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 493.5 chr1 210310981 210311554 + 2.83333 NA Intergenic Intergenic -16985 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 758.667-2 chr2 63488113 63488722 + 2.83333 NA intron (NR_148704, intron 3 of 18) intron (NR_148704, intron 3 of 18) -50410 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 898.833 chr2 160970143 160970694 + 2.83333 NA Intergenic Intergenic -166537 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 279.666-5 chr16 78233900 78234030 + 2.83333 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 134311 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 985.833-2 chr8 125230592 125231681 + 2.83333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 139276 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 325.667-13 chr8 86480563 86480785 + 2.83333 NA intron (NM_001286719, intron 4 of 8) intron (NM_001286719, intron 4 of 8) 28012 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 668.334-2 chr5 168712169 168713146 + 2.83333 NA intron (NR_130737, intron 4 of 6) MIRb|SINE|MIR 5730 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 598.833-3 chr8 141100554 141100989 + 2.83333 NA Intergenic Intergenic -27818 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 488.999-4 chr5 123797032 123797343 + 2.83333 NA Intergenic Intergenic 251770 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 565.666-2 chr2 198314688 198315306 + 2.83333 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 60100 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 1111.17-2 chr18 59823506 59824208 + 2.83333 NA Intergenic Intergenic -76139 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 564-6 chr15 64153680 64153981 + 2.83333 NA intron (NR_073534, intron 5 of 6) intron (NR_073534, intron 5 of 6) 2099 NM_024798 79856 Hs.744250 NM_024798 ENSG00000157734 SNX22 - sorting nexin 22 protein-coding 531.167-3 chr3 48812719 48813020 + 2.83333 NA intron (NM_001321982, intron 1 of 11) intron (NM_001321982, intron 1 of 11) 35005 NM_004157 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 1206-2 chr7 125059233 125060084 + 2.83333 NA intron (NR_125718, intron 4 of 10) intron (NR_125718, intron 4 of 10) -124911 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 381.5-12 chrX 70030071 70030722 + 2.83333 NA intron (NM_001005609, intron 5 of 7) intron (NM_001005609, intron 5 of 7) 7539 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 362.166-4 chrX 64891273 64891435 + 2.83333 NA Intergenic MLT1D|LTR|ERVL-MaLR 85096 NM_018684 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 642.333-2 chr15 68526251 68526708 + 2.83333 NA intron (NM_001324014, intron 1 of 12) L1ME1|LINE|L1 8106 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 320.666 chr1 30167284 30167416 + 2.83333 NA Intergenic L1ME1|LINE|L1 -129738 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 760.833 chr22 50526160 50526497 + 2.83333 NA promoter-TSS (NM_001169111) promoter-TSS (NM_001169111) 111 NM_001169109 9997 Hs.180903 NM_005138 ENSG00000130489 SCO2 CEMCOX1|ECGF1|Gliostatin|MYP6|PD-ECGF|SCO1L|TP|TYMP|TdRPase SCO cytochrome c oxidase assembly protein 2 protein-coding 494-3 chr2 10097513 10097884 + 2.83333 NA Intergenic Intergenic -17287 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 395.167-6 chr2 216775162 216775501 + 2.83333 NA Intergenic Intergenic -79782 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 792.833-2 chr6 72623988 72624739 + 2.83333 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 2520 NM_001160132 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 308.833-18 chr9 29829774 29830210 + 2.83333 NA Intergenic L2|LINE|L2 578462 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 619 chr12 57409261 57409687 + 2.83333 NA intron (NM_001351204, intron 1 of 25) intron (NM_001351204, intron 1 of 25) 21569 NM_001351207 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 1543.83 chr12 750536 752425 + 2.83333 NA Intergenic Intergenic -1099 NM_014823 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 559.667 chr2 30145965 30146746 + 2.83333 NA promoter-TSS (NM_001127399) promoter-TSS (NM_001127399) -652 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 486.5-3 chr14 61759585 61759801 + 2.83333 NA Intergenic L1ME3F|LINE|L1 -2727 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 377.667-2 chr10 100338457 100338893 + 2.83333 NA Intergenic Intergenic -8447 NM_001253837 9033 Hs.159241 NM_016112 ENSG00000107593 PKD2L1 PCL|PKD2L|PKDL|TRPP3 polycystin 2 like 1, transient receptor potential cation channel protein-coding 660.666-2 chr7 77678663 77679280 + 2.83333 NA intron (NR_134251, intron 2 of 3) intron (NR_134251, intron 2 of 3) 17294 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 879.166 chr6 27312579 27313098 + 2.83333 NA promoter-TSS (NM_033482) promoter-TSS (NM_033482) -606 NM_033482 94026 Hs.729955 NM_033482 ENSG00000158553 POM121L2 POM121-L|POM121L POM121 transmembrane nucleoporin like 2 protein-coding 474-9 chr7 23013890 23014414 + 2.83333 NA promoter-TSS (NM_001363466) promoter-TSS (NM_001363466) -22 NM_032581 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 931.334 chr7 4479188 4480149 + 2.83333 NA Intergenic MIR3|SINE|MIR -202627 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 553.833 chr8 26046392 26046928 + 2.83333 NA Intergenic CpG-27103 -1247 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 624.333-2 chr11 116224525 116224815 + 2.83333 NA Intergenic L2c|LINE|L2 -414752 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 866.167 chr7 103065848 103066295 + 2.83333 NA intron (NR_105043, intron 1 of 20) LTR41C|LTR|ERVL 8497 NM_145032 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 511.999 chr14 57469190 57469463 + 2.83333 NA TTS (NM_001283057) TTS (NM_001283057) 24531 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 705.833 chr15 65032802 65033518 + 2.83333 NA Intergenic Intergenic -3521 NM_139242 123263 Hs.531615 NM_139242 ENSG00000103707 MTFMT COXPD15|FMT1|MC1DN27 mitochondrial methionyl-tRNA formyltransferase protein-coding 487.5-4 chr1 220680025 220680441 + 2.83333 NA Intergenic Intergenic -10130 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 458.833-2 chr22 41666578 41666916 + 2.83333 NA Intergenic MER2|DNA|TcMar-Tigger 22120 NM_001003796 4809 Hs.182255 NM_005008 ENSG00000100138 SNU13 15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1 small nuclear ribonucleoprotein 13 protein-coding 713.499 chr2 63117332 63117592 + 2.83333 NA TTS (NR_036635) TTS (NR_036635) 2080 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 410.5-2 chr3 98608278 98608573 + 2.83333 NA Intergenic Intergenic -14814 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 327-20 chr9 78802619 78802826 + 2.83333 NA Intergenic MER94|DNA|hAT-Blackjack 342944 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 929.167-2 chr17 32444067 32444616 + 2.83333 NA promoter-TSS (NM_001270482) promoter-TSS (NM_001270482) -169 NM_002815 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 546.833-3 chr14 64846030 64846668 + 2.83333 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) -22969 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 279-25 chr3 18295278 18295476 + 2.83333 NA Intergenic L1MA4A|LINE|L1 129962 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 938.001 chr3 58217328 58217964 + 2.83333 NA Intergenic Intergenic -6643 NM_001256560 1776 Hs.476453 NM_004944 ENSG00000163687 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease 1 like 3 protein-coding 188.667-49 chr8 66036591 66036719 + 2.83333 NA intron (NM_033105, intron 1 of 5) intron (NM_033105, intron 1 of 5) 15102 NR_146171 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 322-6 chr19 38402867 38403151 + 2.83333 NA promoter-TSS (NM_174905) promoter-TSS (NM_174905) -126 NM_174905 147965 Hs.355162 NM_174905 ENSG00000130244 FAM98C - family with sequence similarity 98 member C protein-coding 780.333 chr17 51764143 51764823 + 2.83333 NA intron (NM_001082533, intron 4 of 9) L2c|LINE|L2 329056 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 779.666 chr10 133519843 133520434 + 2.83333 NA Intergenic Intergenic -7225 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 1174 chr6 46781384 46782322 + 2.83333 NA Intergenic Intergenic -11536 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 349.333-4 chr17 29124104 29124323 + 2.83333 NA intron (NM_001346767, intron 2 of 39) intron (NM_001346767, intron 2 of 39) 16176 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 433.166 chr1 31573955 31574337 + 2.83333 NA Intergenic Intergenic -2339 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 194.833-11 chr15 90482539 90482630 + 2.83333 NA intron (NM_003870, intron 28 of 37) intron (NM_003870, intron 28 of 37) -47339 NM_001042574 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 732.166 chr5 88726823 88727542 + 2.83333 NA intron (NM_001131005, intron 10 of 10) intron (NM_001131005, intron 10 of 10) -36141 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 615.333-3 chr10 109852598 109852878 + 2.83333 NA Intergenic Intergenic 70508 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 467.5 chr11 83635678 83636104 + 2.83333 NA intron (NM_001142699, intron 18 of 27) L1MC|LINE|L1 46534 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 400.834 chr19 28163857 28164132 + 2.83333 NA Intergenic Intergenic -370054 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 1078.67 chr10 67520831 67521526 + 2.83333 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -117768 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 901.832 chr12 122471596 122472050 + 2.83333 NA 3' UTR (NM_017612, exon 14 of 14) 3' UTR (NM_017612, exon 14 of 14) 29109 NM_017612 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 803.667-2 chr3 181702238 181703017 + 2.83333 NA intron (NR_075089, intron 3 of 3) intron (NR_075089, intron 3 of 3) -9298 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 441.666-4 chr9 9862382 9862610 + 2.83333 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) 63104 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 307.167-8 chr12 17589163 17589397 + 2.83333 NA promoter-TSS (NR_146522) promoter-TSS (NR_146522) -202 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 763.499 chr10 88932584 88933095 + 2.83333 NA non-coding (NR_125373, exon 1 of 5) non-coding (NR_125373, exon 1 of 5) 155 NR_125373 100132116 NR_125373 ENSG00000180139 ACTA2-AS1 UC001kfo|ZXF1|uc001kfo.1 ACTA2 antisense RNA 1 ncRNA 953.833-2 chr18 70781604 70782106 + 2.83333 NA Intergenic Intergenic -130901 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 642.667 chr7 150778645 150779169 + 2.83333 NA Intergenic Intergenic 21457 NM_001101312 28959 Hs.647090 NM_014020 ENSG00000106565 TMEM176B LR8|MS4B2 transmembrane protein 176B protein-coding 238.333-21 chr2 46889171 46889423 + 2.83333 NA Intergenic AluY|SINE|Alu 26509 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 400-4 chr12 15478038 15478305 + 2.83333 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -68440 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 703.334-2 chr3 73502630 73503307 + 2.83333 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -18354 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 970.001 chr6 150891461 150892306 + 2.83333 NA intron (NM_001350486, intron 7 of 27) intron (NM_001350486, intron 7 of 27) 25397 NM_001350491 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 470.833-2 chr11 86752398 86752637 + 2.83333 NA Intergenic LTR102_Mam|LTR|ERVL -38554 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 642.166 chr11 74929704 74930388 + 2.83333 NA intron (NM_001270380, intron 6 of 14) MIRc|SINE|MIR 19045 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 1105.17-2 chr17 40560201 40561061 + 2.83333 NA promoter-TSS (NM_001301718) promoter-TSS (NM_001301718) -237 NM_001301718 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 2039.5 chr6 154732610 154734052 + 2.83333 NA promoter-TSS (NM_001286189) promoter-TSS (NM_001286189) -47 NM_001286189 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 847.166 chr20 2172186 2172778 + 2.83333 NA Intergenic L2b|LINE|L2 -34446 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 1033.17 chr17 27893144 27894228 + 2.83333 NA promoter-TSS (NM_001076680) promoter-TSS (NM_001076680) -321 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 623.5 chr5 36928953 36929315 + 2.83333 NA intron (NM_015384, intron 1 of 45) L1ME1|LINE|L1 52365 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 315.333-22 chr6 70228994 70229239 + 2.83333 NA intron (NM_001851, intron 36 of 37) intron (NM_001851, intron 36 of 37) 54081 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 434.499 chr10 87816305 87816699 + 2.83333 NA intron (NM_001321967, intron 1 of 9) L2c|LINE|L2 1729 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 435.5-6 chr8 75258244 75258430 + 2.83333 NA intron (NR_103849, intron 1 of 1) MIR|SINE|MIR 20144 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 623.667 chr20 42531076 42531780 + 2.83333 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -154055 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 589.167-3 chr12 26691491 26692035 + 2.83333 NA intron (NM_002223, intron 10 of 56) intron (NM_002223, intron 10 of 56) 141431 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 351.166-3 chr7 28091223 28091428 + 2.83333 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -89132 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 891.834 chr15 58957279 58958252 + 2.83333 NA Intergenic MLT1F|LTR|ERVL-MaLR -24086 NM_024755 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 533.833-5 chr6 121035318 121035965 + 2.83333 NA Intergenic Intergenic 298839 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 424.5-7 chr14 77097908 77098254 + 2.83333 NA promoter-TSS (NM_033426) promoter-TSS (NM_033426) -177 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 751.666 chr2 54704647 54705333 + 2.83333 NA Intergenic Intergenic -20022 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 239-35 chr7 26688601 26688723 + 2.83333 NA intron (NM_003930, intron 10 of 12) intron (NM_003930, intron 10 of 12) 50791 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 628.333 chr9 103553008 103553297 + 2.83333 NA Intergenic L1M4|LINE|L1 -228119 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 509.833-2 chr17 74791415 74791957 + 2.83333 NA intron (NM_017728, intron 6 of 9) intron (NM_017728, intron 6 of 9) 15187 NM_017728 54868 Hs.370262 NM_017728 ENSG00000109066 TMEM104 - transmembrane protein 104 protein-coding 826.832 chr9 105608902 105609429 + 2.83333 NA intron (NR_147213, intron 7 of 9) intron (NR_147213, intron 7 of 9) 51034 NM_001351499 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 698.499 chr22 45635160 45635460 + 2.83333 NA Intergenic AluSq2|SINE|Alu -29663 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 1426.33 chr5 140806389 140807408 + 2.83333 NA promoter-TSS (NM_018907) promoter-TSS (NM_018907) -170 NM_018907 56144 Hs.199343 NM_018907 ENSG00000204967 PCDHA4 CNR1|CNRN1|CRNR1|PCDH-ALPHA4 protocadherin alpha 4 protein-coding 448.667-3 chr15 84928176 84928796 + 2.83333 NA intron (NM_001287761, intron 11 of 14) intron (NM_001287761, intron 11 of 14) 43824 NM_001321722 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 534.833 chr1 67060865 67061244 + 2.83333 NA Intergenic MER65B|LTR|ERV1 -6906 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 753.167 chr11 133163321 133163687 + 2.83333 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -219736 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 1112.5-2 chr2 177982760 177983723 + 2.83333 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) -60404 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 593.166-2 chr5 23751742 23752008 + 2.83333 NA Intergenic Intergenic -199473 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 816.333-3 chr7 106462535 106463000 + 2.83333 NA Intergenic Intergenic -177784 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 911.499-2 chr8 104776717 104777432 + 2.83333 NA Intergenic Kanga1d|DNA|TcMar-Tc2 -188050 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 281.167-18 chr5 9508097 9508252 + 2.83333 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -3159 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 1018-3 chr5 78268749 78269824 + 2.83333 NA intron (NM_003664, intron 1 of 26) intron (NM_003664, intron 1 of 26) 25412 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 825.999 chr5 54489054 54489975 + 2.83333 NA Intergenic Intergenic -28245 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 474-2 chr1 104414207 104414574 + 2.83333 NA Intergenic Intergenic 341367 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 600.167-3 chr14 78021863 78022725 + 2.83333 NA Intergenic Intergenic -148079 NR_158975 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 388.334-3 chr10 78974706 78975011 + 2.83333 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 92590 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 527.5-2 chr16 68707507 68708029 + 2.83333 NA Intergenic Intergenic -29524 NM_001317185 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 1029.5-2 chr3 48548422 48549230 + 2.83333 NA intron (NM_001317138, intron 3 of 14) intron (NM_001317138, intron 3 of 14) 1195 NR_106881 102465494 NR_106881 ENSG00000278799 MIR6823 hsa-mir-6823 microRNA 6823 ncRNA 960.166 chrX 82218104 82218539 + 2.83333 NA Intergenic L1PA13|LINE|L1 1016219 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 501.167-2 chr10 62226402 62226682 + 2.83333 NA intron (NM_145307, intron 6 of 11) intron (NM_145307, intron 6 of 11) 42302 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 1186 chr16 46947383 46948372 + 2.83333 NA Intergenic L1ME4c|LINE|L1 25797 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 868.334-2 chr2 162006950 162007674 + 2.83333 NA intron (NM_001935, intron 22 of 25) intron (NM_001935, intron 22 of 25) 66903 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 649.5-3 chr17 33520185 33520828 + 2.83333 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 13254 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 428.667 chr19 10390710 10391090 + 2.83333 NA TTS (NM_007065) TTS (NM_007065) -10328 NM_003331 7297 Hs.75516 NM_003331 ENSG00000105397 TYK2 IMD35|JTK1 tyrosine kinase 2 protein-coding 547.5-5 chr3 196064532 196064833 + 2.83333 NA intron (NM_001313966, intron 8 of 16) intron (NM_001313966, intron 8 of 16) 17408 NM_001313965 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 464.333-5 chr6 108050082 108050532 + 2.83333 NA intron (NM_014028, intron 4 of 5) L2a|LINE|L2 24434 NM_014028 28962 Hs.226780 NM_014028 ENSG00000081087 OSTM1 GIPN|GL|HSPC019|OPTB5 osteoclastogenesis associated transmembrane protein 1 protein-coding 734.834 chr17 52106606 52107118 + 2.83333 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 51852 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 976.666-2 chr4 124261928 124262644 + 2.83333 NA Intergenic Intergenic 296148 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 884.5 chr17 10875753 10876372 + 2.83333 NA Intergenic Intergenic -37975 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 731.333-4 chr7 101363521 101364187 + 2.83333 NA intron (NM_133457, intron 1 of 12) CpG 979 NM_001278563 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 340.666-4 chr5 149434405 149434685 + 2.83333 NA Intergenic Intergenic 3899 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 224.167-23 chr3 151156766 151156869 + 2.83333 NA intron (NM_053002, intron 5 of 42) intron (NM_053002, intron 5 of 42) 46399 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 212-15 chr11 108222867 108222963 + 2.83333 NA promoter-TSS (NM_002519) promoter-TSS (NM_002519) 83 NM_000051 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 270.5-24 chr3 24254889 24255076 + 2.83333 NA intron (NM_001354708, intron 2 of 9) intron (NM_001354708, intron 2 of 9) 103658 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 966.167 chr9 34500441 34501243 + 2.83333 NA intron (NM_001281428, intron 11 of 19) intron (NM_001281428, intron 11 of 19) 22148 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 485.667-8 chr4 112655285 112655717 + 2.83333 NA intron (NM_001370981, intron 12 of 12) intron (NM_001370981, intron 12 of 12) -5450 NR_146092 109864269 Hs.642978 NR_146092 ENSG00000249532 MIR302CHG - miR-302/367 cluster host gene ncRNA 473.166 chr13 54143542 54144000 + 2.83333 NA Intergenic Intergenic -10900 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 935.667 chr2 64522686 64523550 + 2.83333 NA non-coding (NR_136167, exon 1 of 1) non-coding (NR_136167, exon 1 of 1) 1037 NR_136167 101927402 Hs.187018 NR_136167 ENSG00000260101 LOC101927402 - uncharacterized LOC101927402 ncRNA 1225.17-3 chr8 9338413 9339272 + 2.83333 NA Intergenic Intergenic 13791 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 469.5 chr1 28881981 28882645 + 2.83333 NA Intergenic Intergenic -4778 NM_203342 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 813.166 chr1 118150921 118151889 + 2.83333 NA intron (NM_206996, intron 1 of 48) intron (NM_206996, intron 1 of 48) 33823 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 657.167 chr9 90102360 90102926 + 2.83333 NA Intergenic Intergenic -61144 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 692.334 chr10 68153618 68154205 + 2.83333 NA intron (NR_045663, intron 6 of 17) intron (NR_045663, intron 6 of 17) 44423 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 1068.83 chr7 28020106 28020789 + 2.83333 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -160010 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 358.5-12 chr8 9563377 9563660 + 2.83333 NA intron (NM_003747, intron 1 of 26) MER58A|DNA|hAT-Charlie 7606 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 616.833-2 chr6 91913779 91914198 + 2.83333 NA Intergenic Intergenic -223560 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 629.5-2 chr5 42422972 42423363 + 2.83333 NA promoter-TSS (NM_000163) promoter-TSS (NM_000163) -272 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 385.666-4 chr20 47863618 47863843 + 2.83333 NA Intergenic L1ME3G|LINE|L1 -77114 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 1103.67 chr17 22703448 22704031 + 2.83333 NA Intergenic Intergenic 180628 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 582.333-2 chr5 61450384 61450659 + 2.83333 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 118263 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 372.834 chr10 69217266 69217524 + 2.83333 NA intron (NR_120648, intron 4 of 4) intron (NR_120648, intron 4 of 4) -2937 NM_025130 80201 Hs.522988 NM_025130 ENSG00000156510 HKDC1 - hexokinase domain containing 1 protein-coding 450.167-4 chr9 113274374 113274662 + 2.83333 NA intron (NM_139286, intron 1 of 3) intron (NM_139286, intron 1 of 3) 1054 NM_139286 246184 Hs.727648 NM_139286 ENSG00000176386 CDC26 ANAPC12|APC12|C9orf17 cell division cycle 26 protein-coding 615.5 chr13 33228501 33228797 + 2.83333 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -22599 NM_001243474 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 569.5-3 chr4 48315946 48316850 + 2.83333 NA Intergenic Intergenic -25131 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 938.333 chr19 39328033 39328713 + 2.83333 NA TTS (NM_001301008) TTS (NM_001301008) 7670 NM_004877 9535 Hs.5210 NM_004877 ENSG00000130755 GMFG GMF-GAMMA glia maturation factor gamma protein-coding 224.833-25 chr7 91852517 91852613 + 2.83333 NA Intergenic L1PA17|LINE|L1 28137 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 946.167-2 chr7 41976885 41977530 + 2.83333 NA intron (NM_000168, intron 12 of 14) intron (NM_000168, intron 12 of 14) 260002 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 1116.5 chr16 55542858 55544200 + 2.83333 NA intron (NM_017839, intron 8 of 13) intron (NM_017839, intron 8 of 13) -23155 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 CSS2 calpain small subunit 2 protein-coding 525-2 chr14 58427385 58427993 + 2.83333 NA promoter-TSS (NR_130752) promoter-TSS (NR_130752) -30 NM_001329945 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 609.167-3 chr2 119264773 119265582 + 2.83333 NA 3' UTR (NM_182915, exon 6 of 6) 3' UTR (NM_182915, exon 6 of 6) -16106 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 1061.83-3 chr2 222708186 222708886 + 2.83333 NA intron (NM_058165, intron 5 of 5) intron (NM_058165, intron 5 of 5) 36878 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 799-2 chr13 42969451 42970039 + 2.83333 NA intron (NM_001331228, intron 1 of 9) intron (NM_001331228, intron 1 of 9) 22496 NM_001331228 94240 Hs.546467 NM_033255 ENSG00000133106 EPSTI1 BRESI1 epithelial stromal interaction 1 protein-coding 530.167-4 chr8 130094839 130095131 + 2.83333 NA intron (NM_018482, intron 24 of 29) intron (NM_018482, intron 24 of 29) -10217 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 431.333 chr11 19938186 19938455 + 2.83333 NA intron (NM_182964, intron 7 of 37) MER102b|DNA|hAT-Charlie -84236 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 315.666-3 chr2 205674550 205674766 + 2.83333 NA Intergenic Intergenic -7842 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 1008-2 chr2 65264814 65265589 + 2.83333 NA intron (NM_001005386, intron 9 of 9) intron (NM_001005386, intron 9 of 9) 37506 NM_001005386 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 618.166 chr16 10971182 10971656 + 2.83333 NA intron (NM_001243403, intron 5 of 20) intron (NM_001243403, intron 5 of 20) 26855 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 393.166-4 chr14 78968809 78969056 + 2.83333 NA intron (NR_073547, intron 13 of 20) MIRb|SINE|MIR -231050 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 609.833-2 chr12 56302526 56303150 + 2.83333 NA Intergenic AluSx3|SINE|Alu -2508 NM_004077 1431 Hs.743252 NM_004077 ENSG00000062485 CS - citrate synthase protein-coding 521.333 chr1 40096792 40097035 + 2.83333 NA intron (NM_001363695, intron 1 of 7) intron (NM_001363695, intron 1 of 7) 339 NM_001142604 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 1046 chr1 59759158 59760220 + 2.83333 NA intron (NM_001350794, intron 14 of 14) intron (NM_001350794, intron 14 of 14) -13106 NR_110627 101926944 Hs.720353 NR_110627 LOC101926944 - uncharacterized LOC101926944 ncRNA 562.5-2 chr20 24918284 24918774 + 2.83333 NA Intergenic CpG -30740 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 580.999 chr7 157432725 157433128 + 2.83333 NA Intergenic Intergenic -33305 NR_110157 101927914 Hs.623826 NR_110157 ENSG00000234210 LOC101927914 - uncharacterized LOC101927914 ncRNA 510.334-2 chr3 145776762 145777273 + 2.83333 NA Intergenic Intergenic 292168 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 462 chr2 192749546 192749813 + 2.83333 NA promoter-TSS (NR_002769) promoter-TSS (NR_002769) -166 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 288.166-3 chr11 95013453 95013597 + 2.83333 NA Intergenic L1MB3|LINE|L1 -11733 NM_001161630 390245 Hs.714692 NM_001161630 ENSG00000235268 KDM4E JMJD2E|KDM4DL|KDM5E lysine demethylase 4E protein-coding 370.666-4 chr8 132246345 132246562 + 2.83333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -141188 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 369.333-6 chr7 75762601 75762909 + 2.83333 NA Intergenic Intergenic -23814 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 817.666-2 chr11 62555924 62556963 + 2.83333 NA Intergenic Intergenic 3863 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 920.667-2 chrUn_KI270438v1 109016 109726 + 2.83333 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 303.166-6 chr3 116758181 116758452 + 2.83333 NA Intergenic Intergenic 48528 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 475.5-3 chr4 92970131 92970446 + 2.83333 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 665889 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 466.833 chr2 152054391 152054893 + 2.83333 NA intron (NM_000726, intron 2 of 13) L1MB7|LINE|L1 44121 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 452.334 chr10 4672863 4673211 + 2.83333 NA intron (NR_024475, intron 1 of 3) intron (NR_024475, intron 1 of 3) 5033 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 355.5-3 chr2 218186086 218186889 + 2.83333 NA Intergenic Intergenic -19525 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 267.5-3 chr10 60296537 60296743 + 2.83333 NA intron (NM_001204403, intron 2 of 43) L2c|LINE|L2 93235 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 647.833 chr16 83926612 83927377 + 2.83333 NA TTS (NM_012213) TTS (NM_012213) -26246 NM_182981 29948 Hs.128055 NM_013370 ENSG00000140961 OSGIN1 BDGI|OKL38 oxidative stress induced growth inhibitor 1 protein-coding 682.166 chr10 125868189 125868582 + 2.83333 NA intron (NM_018180, intron 1 of 10) intron (NM_018180, intron 1 of 10) 12907 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 906.833 chr3 172332392 172332895 + 2.83333 NA intron (NM_001135095, intron 13 of 25) intron (NM_001135095, intron 13 of 25) 115813 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 538.833-2 chr9 96327593 96328167 + 2.83333 NA intron (NM_001286990, intron 6 of 8) AluJr|SINE|Alu -25704 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 576.666-2 chr4 128384086 128384418 + 2.83333 NA Intergenic L2c|LINE|L2 -43764 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 963.667 chr9 133184170 133185767 + 2.83333 NA Intergenic L1MB5|LINE|L1 -21054 NM_001288572 26301 Hs.495419 NM_021996 ENSG00000148288 GBGT1 A3GALNT|FS|UNQ2513 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) protein-coding 450.5-2 chr12 31659142 31659394 + 2.83333 NA promoter-TSS (NM_001135863) promoter-TSS (NM_001135863) 65 NM_173802 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 665.334-2 chr5 13987697 13988369 + 2.83333 NA Intergenic Intergenic -43553 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 717.168 chr6 54412837 54413294 + 2.83333 NA Intergenic L2|LINE|L2 104624 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 454-11 chr6 78611881 78612325 + 2.83333 NA Intergenic Intergenic -72794 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 482.333 chr1 221203605 221203899 + 2.83333 NA Intergenic Intergenic 132544 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 686.167-4 chr3 156509661 156510289 + 2.83333 NA intron (NM_172159, intron 8 of 13) intron (NM_172159, intron 8 of 13) 44150 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 487.167-3 chr5 177312074 177312513 + 2.83333 NA promoter-TSS (NM_031300) promoter-TSS (NM_031300) -395 NM_001142935 83463 Hs.743332 NM_031300 ENSG00000213347 MXD3 BHLHC13|MAD3|MYX MAX dimerization protein 3 protein-coding 1243.17-2 chr5 141191844 141192579 + 2.83333 NA promoter-TSS (NM_018930) promoter-TSS (NM_018930) -142 NM_018930 56126 Hs.657953 NM_018930 ENSG00000120324 PCDHB10 PCDH-BETA10|PCHB10 protocadherin beta 10 protein-coding 963.666 chr1 63441216 63442200 + 2.83333 NA intron (NM_001347145, intron 7 of 7) intron (NM_001347145, intron 7 of 7) 74081 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 998.334-2 chr5 128844252 128844946 + 2.83333 NA Intergenic Intergenic -120528 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 662.667 chr1 207896937 207897335 + 2.83333 NA intron (NM_001025109, intron 4 of 7) intron (NM_001025109, intron 4 of 7) 13989 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 1130.67 chr3 113287887 113288834 + 2.83333 NA TTS (NM_033254) TTS (NM_033254) 76244 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 835.333 chr1 162877702 162878478 + 2.83333 NA Intergenic Intergenic -9275 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 916 chr4 121096282 121096902 + 2.83333 NA Intergenic Intergenic -24057 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 751.834 chr10 28180446 28180907 + 2.83333 NA intron (NR_134518, intron 2 of 16) MLT1I|LTR|ERVL-MaLR 101447 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 903.168 chr2 79935665 79936182 + 2.83333 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -69340 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 980.333-3 chr9 97386893 97387357 + 2.83333 NA Intergenic Intergenic 9566 NR_026847 286359 Hs.132262 NM_182600 LOC286359 - uncharacterized LOC286359 ncRNA 875.499 chr9 135412529 135413209 + 2.83333 NA Intergenic Intergenic 59380 NR_038969 100506599 Hs.561897 NR_038969 ENSG00000225361 PPP1R26-AS1 - PPP1R26 antisense RNA 1 ncRNA 1599 chr8 64574648 64575876 + 2.83333 NA non-coding (NR_015374, exon 2 of 2) non-coding (NR_015374, exon 2 of 2) 2001 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 563-3 chr5 36693273 36693759 + 2.83333 NA Intergenic MER5A|DNA|hAT-Charlie 86910 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 941.833 chr2 150487488 150488237 + 2.83333 NA promoter-TSS (NM_001254738) promoter-TSS (NM_001254738) -167 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 1062.17 chr8 31595812 31596502 + 2.83333 NA Intergenic Intergenic -43595 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 418.5-3 chr17 55607951 55608221 + 2.83333 NA Intergenic Intergenic 114778 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 304.5-16 chr2 237187439 237187641 + 2.83333 NA Intergenic Intergenic 101651 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 619.5-2 chr16 50671447 50671879 + 2.83333 NA TTS (NR_110908) TTS (NR_110908) 2808 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 580-2 chr16 66315187 66315835 + 2.83333 NA Intergenic Intergenic -51180 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 700.833 chr12 120437691 120438320 + 2.83333 NA promoter-TSS (NM_004373) promoter-TSS (NM_004373) -108 NM_004373 1337 Hs.369624 NM_004373 ENSG00000111775 COX6A1 CMTRID|COX6A|COX6AL cytochrome c oxidase subunit 6A1 protein-coding 779.833 chr15 52256119 52257148 + 2.83333 NA intron (NM_018728, intron 11 of 40) intron (NM_018728, intron 11 of 40) 20567 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 1100.67-4 chr9 35116319 35117325 + 2.83333 NA promoter-TSS (NR_134455) promoter-TSS (NR_134455) -960 NM_025182 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 621.833-2 chr8 118120711 118121348 + 2.83333 NA Intergenic Intergenic -9210 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 406.333 chr10 81581635 81581904 + 2.83333 NA Intergenic Intergenic -293425 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 212-30 chr22 30669722 30669797 + 2.83333 NA TTS (NM_001318371) TTS (NM_001318371) -1884 NM_152511 150290 Hs.517544 NM_152511 ENSG00000167065 DUSP18 DSP18|DUSP20|LMWDSP20 dual specificity phosphatase 18 protein-coding 368.166-2 chr4 44738756 44739027 + 2.83333 NA Intergenic Intergenic -12257 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 340-3 chr10 96396075 96396365 + 2.83333 NA intron (NM_012465, intron 11 of 20) intron (NM_012465, intron 11 of 20) -36855 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 341.333-9 chr3 88165000 88165186 + 2.83333 NA Intergenic MIR3|SINE|MIR 15134 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 932.666 chr12 19288574 19289187 + 2.83333 NA intron (NM_019012, intron 12 of 25) intron (NM_019012, intron 12 of 25) 83555 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 256.167-13 chr21 33199729 33199996 + 2.83333 NA Intergenic Intergenic -29626 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 541.332 chr13 113187325 113187878 + 2.83333 NA 5' UTR (NM_001353095, exon 8 of 15) 5' UTR (NM_001353095, exon 8 of 15) -20592 NM_001278513 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 825.166-2 chr18 49510599 49511105 + 2.83333 NA Intergenic Intergenic -18388 NM_001199342 6139 Hs.293653 NM_000985 ENSG00000265681 RPL17 L17|PD-1|RPL23 ribosomal protein L17 protein-coding 471.5 chr1 167225797 167226060 + 2.83333 NA intron (NM_001198786, intron 1 of 14) intron (NM_001198786, intron 1 of 14) 5042 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 597.333 chr1 100050520 100050955 + 2.83333 NA intron (NM_033055, intron 2 of 11) intron (NM_033055, intron 2 of 11) 12642 NM_033055 64645 Hs.124156 NM_033055 ENSG00000156875 MFSD14A HIAT1 major facilitator superfamily domain containing 14A protein-coding 740.667 chr9 97411241 97411905 + 2.83333 NA promoter-TSS (NM_014290) promoter-TSS (NM_014290) -523 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 902.5-3 chr3 112561930 112562492 + 2.83333 NA promoter-TSS (NM_022488) promoter-TSS (NM_022488) 166 NM_017945 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 1035.5-2 chr13 35157163 35157762 + 2.83333 NA intron (NM_015678, intron 21 of 57) MIR3|SINE|MIR 215175 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 609.167-5 chr7 37944528 37945188 + 2.83333 NA intron (NM_001242948, intron 1 of 2) intron (NM_001242948, intron 1 of 2) 23539 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 897.334 chr4 120070952 120071753 + 2.83333 NA Intergenic Intergenic -4504 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 433-6 chr16 80924385 80924721 + 2.83333 NA Intergenic Intergenic -31957 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 448.333-2 chr2 203935915 203936344 + 2.83333 NA promoter-TSS (NM_012092) promoter-TSS (NM_012092) -619 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 539.834-2 chr2 32079930 32080412 + 2.83333 NA intron (NM_001363875, intron 1 of 15) L1M4|LINE|L1 16560 NM_001363823 6683 Hs.468091 NM_014946 ENSG00000021574 SPAST ADPSP|FSP2|SPG4 spastin protein-coding 960.5-2 chr18 55415143 55415869 + 2.83333 NA intron (NM_001348217, intron 4 of 18) intron (NM_001348217, intron 4 of 18) 6791 NM_001348213 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 888.166-2 chrX 68827321 68828202 + 2.83333 NA Intergenic Intergenic -1236 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 655.167 chr2 184611557 184612167 + 2.83333 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 13333 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 798.833 chr11 67508158 67508794 + 2.83333 NA promoter-TSS (NM_001271849) promoter-TSS (NM_001271849) 252 NM_005851 10263 Hs.523835 NM_005851 ENSG00000167797 CDK2AP2 DOC-1R|p14 cyclin dependent kinase 2 associated protein 2 protein-coding 323.667-18 chr21 31636030 31636198 + 2.83333 NA Intergenic L1M4|LINE|L1 -23508 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 626.666-3 chr22 28449005 28449515 + 2.83333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -10609 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 754.833 chr4 119558962 119559306 + 2.83333 NA intron (NM_033437, intron 7 of 20) intron (NM_033437, intron 7 of 20) 68603 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 562.334 chr19 47483915 47484305 + 2.83333 NA promoter-TSS (NR_038452) promoter-TSS (NR_038452) 109 NR_111923 11133 Hs.25441 NM_007059 ENSG00000118162 KPTN 2E4|MRT41 kaptin, actin binding protein protein-coding 544.5-6 chr2 101831401 101831717 + 2.83333 NA intron (NM_145686, intron 6 of 30) intron (NM_145686, intron 6 of 30) 133852 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 792.166 chr8 16763924 16764860 + 2.83333 NA Intergenic Intergenic 237953 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 709.167 chr1 75632271 75633131 + 2.83333 NA Intergenic Intergenic -16538 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 449.5-2 chr2 232327236 232327579 + 2.83333 NA intron (NR_046476, intron 14 of 20) intron (NR_046476, intron 14 of 20) -51344 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|ALPI|IAP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 484.999 chr4 8918136 8918418 + 2.83333 NA Intergenic MER53|DNA|hAT -46438 NM_018942 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 693.333-3 chr9 116860767 116861142 + 2.83333 NA intron (NM_014010, intron 10 of 21) intron (NM_014010, intron 10 of 21) 173649 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 750.833-2 chrX 78555005 78555688 + 2.83333 NA Intergenic Charlie1a|DNA|hAT-Charlie 103982 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 604.501-2 chr4 165493132 165493509 + 2.83333 NA intron (NM_001873, intron 7 of 8) intron (NM_001873, intron 7 of 8) 107078 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 649.333 chr2 69012809 69013289 + 2.83333 NA promoter-TSS (NM_053034) promoter-TSS (NM_053034) -95 NM_018153 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 680.666 chr11 7571465 7571915 + 2.83333 NA intron (NM_003621, intron 3 of 23) intron (NM_003621, intron 3 of 23) -5077 NM_001351861 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 676.5 chr1 51896726 51897278 + 2.83333 NA Intergenic Intergenic -18065 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 631-3 chr3 15916814 15917083 + 2.83333 NA Intergenic L1MC5|LINE|L1 43177 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 878.5-2 chr8 127735957 127736727 + 2.83333 NA 5' UTR (NM_001354870, exon 1 of 3) 5' UTR (NM_001354870, exon 1 of 3) 111 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 407.5-2 chr10 122703996 122704462 + 2.83333 NA Intergenic Intergenic -4383 NM_001010912 399814 Hs.363649 NM_001010912 ENSG00000183559 C10orf120 bA318C4.1 chromosome 10 open reading frame 120 protein-coding 317.333-11 chr3 42536545 42536820 + 2.83333 NA 3' UTR (NM_001251882, exon 14 of 14) 3' UTR (NM_001251882, exon 14 of 14) -4076 NR_046654 100874007 Hs.600642 NR_046654 VIPR1-AS1 - VIPR1 antisense RNA 1 ncRNA 511.999-3 chr4 44115657 44115921 + 2.83333 NA Intergenic Intergenic 98727 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 702.834 chr5 88680198 88681004 + 2.83333 NA intron (NR_146284, intron 1 of 3) CpG -2153 NR_152239 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 512-2 chr10 104264877 104265438 + 2.83333 NA intron (NM_001191003, intron 4 of 5) L1ME3A|LINE|L1 3248 NR_039702 100616323 NR_039702 ENSG00000266852 MIR4482 MIR4482-1|hsa-mir-4482-1 microRNA 4482 ncRNA 561.833-3 chr6 119350803 119351134 + 2.83333 NA Intergenic Intergenic -1207 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 1126.83 chr12 29551938 29552957 + 2.83333 NA intron (NM_001367875, intron 12 of 19) MER33|DNA|hAT-Charlie -52754 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 772.333 chr17 75783201 75783930 + 2.83333 NA TTS (NR_039892) TTS (NR_039892) 1042 NR_039892 100616282 NR_039892 ENSG00000283853 MIR4738 - microRNA 4738 ncRNA 612.166 chr17 44006992 44007481 + 2.83333 NA intron (NM_153006, intron 4 of 6) CpG-11225 2614 NM_153006 162417 Hs.8876 NM_153006 ENSG00000161653 NAGS AGAS|ARGA N-acetylglutamate synthase protein-coding 684.166 chr4 176789723 176790210 + 2.83333 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 2956 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 729.501 chr18 13630076 13630612 + 2.83333 NA intron (NM_001003675, intron 2 of 2) intron (NM_001003675, intron 2 of 2) -11414 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 677.999-2 chr20 9409252 9409653 + 2.83333 NA intron (NM_000933, intron 20 of 35) intron (NM_000933, intron 20 of 35) 101652 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 483.333-2 chr14 103391074 103391308 + 2.83333 NA intron (NM_001128920, intron 1 of 15) MER20|DNA|hAT-Charlie 5776 NM_001128918 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a|VIPB microtubule affinity regulating kinase 3 protein-coding 373.5 chr10 91493158 91493724 + 2.83333 NA exon (NM_001348365, exon 14 of 21) exon (NM_001348365, exon 14 of 21) 83156 NM_173497 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 378.333-9 chr7 27344852 27345149 + 2.83333 NA Intergenic Intergenic -97771 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 568.166-2 chr7 6372537 6373061 + 2.83333 NA Intergenic (T)n|Simple_repeat|Simple_repeat -1728 NM_006908 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 559.333-2 chr18 76983107 76983708 + 2.83333 NA intron (NM_001025081, intron 6 of 6) intron (NM_001025081, intron 6 of 6) 33648 NM_001025081 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 1434.5 chr8 103796377 103797387 + 2.83333 NA intron (NM_001348497, intron 3 of 22) MER91C|DNA|hAT-Tip100 -22338 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 980.666 chr20 3795506 3796309 + 2.83333 NA 5' UTR (NM_021872, exon 1 of 15) 5' UTR (NM_021872, exon 1 of 15) 168 NM_004358 994 Hs.153752 NM_004358 ENSG00000101224 CDC25B - cell division cycle 25B protein-coding 497.167-2 chr2 222139303 222139527 + 2.83333 NA Intergenic Intergenic -158732 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 1036.83 chr14 59506606 59507765 + 2.83333 NA intron (NM_001164399, intron 19 of 19) intron (NM_001164399, intron 19 of 19) 22668 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 363.834 chr11 57645177 57645473 + 2.83333 NA 3' UTR (NM_001363487, exon 6 of 6) 3' UTR (NM_001363487, exon 6 of 6) 4127 NR_029673 406919 NR_029673 ENSG00000208009 MIR130A MIRN130A|miRNA130A|mir-130a microRNA 130a ncRNA 399.5-5 chr14 71050189 71050591 + 2.83333 NA intron (NM_014982, intron 22 of 35) intron (NM_014982, intron 22 of 35) 142931 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 559.333-5 chr4 46328700 46329509 + 2.83333 NA intron (NM_001286827, intron 3 of 9) intron (NM_001286827, intron 3 of 9) 60275 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 397.334-3 chr2 178804695 178805017 + 2.83333 NA intron (NM_133379, intron 1 of 45) intron (NM_133379, intron 1 of 45) 2567 NM_003319 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 580.834 chr1 241896110 241896568 + 2.83333 NA Intergenic MIR3|SINE|MIR 47608 NM_003686 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 590.667-3 chr15 33233159 33233521 + 2.83333 NA Intergenic Intergenic 14215 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 703.166 chr1 200279621 200280021 + 2.83333 NA Intergenic MIRb|SINE|MIR 93971 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 671.166 chr3 94069196 94069716 + 2.83333 NA intron (NM_022072, intron 2 of 5) intron (NM_022072, intron 2 of 5) 6395 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 585.834-2 chr20 17536673 17537133 + 2.83333 NA intron (NM_001278608, intron 3 of 9) MLT1B|LTR|ERVL-MaLR -5524 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 448.167 chr1 110975298 110975470 + 2.83333 NA Intergenic L1MEg|LINE|L1 -11440 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 368.333-2 chr1 118492749 118492996 + 2.83333 NA Intergenic L2|LINE|L2 -307644 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 519.5-5 chr8 106858014 106858350 + 2.83333 NA Intergenic MIR|SINE|MIR -87938 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 646.5-3 chr2 112259362 112259816 + 2.83333 NA Intergenic MER20|DNA|hAT-Charlie -4547 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 724.332 chr9 90980812 90981232 + 2.83333 NA Intergenic L1ME2z|LINE|L1 94110 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 470.833-8 chr2 194378992 194379184 + 2.83333 NA intron (NR_110222, intron 4 of 5) intron (NR_110222, intron 4 of 5) 34819 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 746.499 chr8 140768643 140769190 + 2.83333 NA intron (NM_001352718, intron 14 of 32) intron (NM_001352718, intron 14 of 32) -36263 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 911.5-2 chr5 171911990 171912583 + 2.83333 NA intron (NM_033645, intron 1 of 11) intron (NM_033645, intron 1 of 11) 94587 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 622.501 chr13 46160261 46160932 + 2.83333 NA intron (NM_002298, intron 1 of 15) intron (NM_002298, intron 1 of 15) 21581 NM_002298 3936 Hs.381099 NM_002298 ENSG00000136167 LCP1 CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2 lymphocyte cytosolic protein 1 protein-coding 779.333 chr1 98749113 98749900 + 2.83333 NA intron (NM_015976, intron 8 of 8) intron (NM_015976, intron 8 of 8) 87785 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 700.667-2 chr8 128322509 128322876 + 2.83333 NA Intergenic MLT1H|LTR|ERVL-MaLR 172576 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 344.666-5 chr8 40790446 40790667 + 2.83333 NA intron (NM_024645, intron 2 of 6) L1MC2|LINE|L1 107270 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 565.167-4 chr6 43506493 43507125 + 2.83333 NA TTS (NM_001146018) TTS (NM_001146018) 3534 NM_001012974 221424 Hs.445552 NM_001012974 ENSG00000204052 LRRC73 C6orf154 leucine rich repeat containing 73 protein-coding 594 chr4 140861118 140861584 + 2.83333 NA 3' UTR (NM_020724, exon 7 of 7) 3' UTR (NM_020724, exon 7 of 7) -104966 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 601.166 chr9 33162489 33162880 + 2.83333 NA intron (NM_001497, intron 1 of 5) intron (NM_001497, intron 1 of 5) -4264 NR_108110 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 577.5-2 chr16 3174190 3174699 + 2.83333 NA Intergenic Intergenic -13760 NM_001370641 4992 Hs.664502 NM_012360 ENSG00000168124 OR1F1 OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023 olfactory receptor family 1 subfamily F member 1 protein-coding 1045.83 chr12 19915463 19916071 + 2.83333 NA Intergenic Intergenic -98918 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 521.166 chr12 111451599 111451901 + 2.83333 NA TTS (NM_002973) TTS (NM_002973) 16888 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 1387.33-2 chrX 8815240 8816230 + 2.83333 NA Intergenic MER20|DNA|hAT-Charlie -14352 NM_174951 171482 Hs.382062 NM_174951 ENSG00000183304 FAM9A TEX39A family with sequence similarity 9 member A protein-coding 364-4 chr13 78241233 78241588 + 2.83333 NA intron (NR_047001, intron 2 of 5) intron (NR_047001, intron 2 of 5) 186555 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 699.833-2 chr5 63401263 63402035 + 2.83333 NA Intergenic Intergenic 560643 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 765.833 chr16 66878016 66878617 + 2.83333 NA Intergenic L2b|LINE|L2 -2199 NM_001329931 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 349.167-8 chr3 132253362 132253673 + 2.83333 NA Intergenic Intergenic -63890 NM_001292037 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 654.334 chr17 29536974 29537398 + 2.83333 NA intron (NM_025142, intron 17 of 17) intron (NM_025142, intron 17 of 17) 29851 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding 704.834 chr11 35238097 35238886 + 2.83333 NA Intergenic Intergenic 75541 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 782.167-3 chr8 8736830 8737508 + 2.83333 NA Intergenic Intergenic 35232 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 912.666-2 chr16 78235039 78235686 + 2.83333 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 135708 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 567.166-2 chr8 88321240 88321751 + 2.83333 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 5988 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 364.167-5 chr5 147404232 147404486 + 2.83333 NA intron (NM_001197294, intron 8 of 13) intron (NM_001197294, intron 8 of 13) 49333 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 505.667-8 chrX 83416293 83416751 + 2.83333 NA Intergenic Intergenic -91768 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 419-6 chr17 70744682 70744921 + 2.83333 NA Intergenic Intergenic 457378 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 528.666-3 chr3 14791252 14791485 + 2.83333 NA Intergenic Intergenic 20046 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 1552.83-2 chr8 48921169 48922421 + 2.83333 NA promoter-TSS (NM_003068) promoter-TSS (NM_003068) -366 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 286.667-19 chr4 117134460 117134861 + 2.66667 NA Intergenic Intergenic -49084 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 666.832 chr8 80084343 80084866 + 2.66667 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) -3773 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 650.667-3 chr17 58317014 58317932 + 2.66667 NA intron (NM_024418, intron 13 of 30) intron (NM_024418, intron 13 of 30) -7977 NR_038410 100506779 Hs.718477 NR_038410 ENSG00000265148 TSPOAP1-AS1 BZRAP1-AS1 TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 ncRNA 477.333-8 chr9 6008545 6008893 + 2.66667 NA promoter-TSS (NM_001017969) promoter-TSS (NM_001017969) -237 NM_001017969 158358 Hs.535060 NM_001017969 ENSG00000183354 KIAA2026 - KIAA2026 protein-coding 1061.67 chr1 59947207 59947944 + 2.66667 NA Intergenic Intergenic -20777 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 680.167-3 chr5 7469096 7469437 + 2.66667 NA intron (NM_020546, intron 2 of 24) L1ME4a|LINE|L1 73128 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 1121.33-2 chr20 32945586 32946718 + 2.66667 NA intron (NM_001143967, intron 23 of 26) L1ME4a|LINE|L1 58281 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 767 chr1 8560922 8561572 + 2.66667 NA intron (NM_001042681, intron 4 of 22) intron (NM_001042681, intron 4 of 22) -66334 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 524.5 chr10 96910594 96911068 + 2.66667 NA intron (NM_001170766, intron 4 of 8) intron (NM_001170766, intron 4 of 8) 77886 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 254-7 chr11 6703584 6703733 + 2.66667 NA Intergenic Intergenic 18221 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 1097-2 chr13 24997171 24997963 + 2.66667 NA Intergenic Intergenic -29098 NR_026730 646405 Hs.620592 NM_001126062 TPTE2P1 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudo 343.334 chr11 111385316 111385485 + 2.66667 NA Intergenic L1MEh|LINE|L1 -6125 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 649.667-2 chr9 93003467 93003926 + 2.66667 NA intron (NM_001369952, intron 4 of 16) intron (NM_001369952, intron 4 of 16) 11248 NR_121565 101927954 Hs.673794 NR_121565 LOC101927954 - uncharacterized LOC101927954 ncRNA 480.167 chr14 55731680 55732271 + 2.66667 NA Intergenic Charlie7a|DNA|hAT-Charlie -34270 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 365-7 chr6 36689215 36689399 + 2.66667 NA Intergenic ERVL-E-int|LTR|ERVL -8519 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 838.334 chr5 116575681 116576283 + 2.66667 NA intron (NR_147170, intron 1 of 2) intron (NR_147170, intron 1 of 2) -1159 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 768 chr3 76044797 76045631 + 2.66667 NA Intergenic Intergenic -259665 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 362.334-2 chr11 115547074 115547336 + 2.66667 NA Intergenic MIR|SINE|MIR -42790 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 964.333 chr14 60559084 60559806 + 2.66667 NA Intergenic Intergenic 50299 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 517.333-5 chr3 159266751 159267035 + 2.66667 NA TTS (NM_001042705) TTS (NM_001042705) -6354 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 749.501 chr9 12639750 12640663 + 2.66667 NA Intergenic Intergenic -53179 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 514.333 chr13 39616028 39616354 + 2.66667 NA Intergenic Intergenic -12998 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 274.5-18 chr3 126216535 126216681 + 2.66667 NA Intergenic Intergenic -35422 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 620 chr11 59822601 59823188 + 2.66667 NA Intergenic Intergenic -12116 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 441.334-5 chr7 70696651 70697043 + 2.66667 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -435297 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 479.333-5 chr17 28540916 28541152 + 2.66667 NA Intergenic AluJo|SINE|Alu 11590 NM_001330166 9094 Hs.410455 NM_005148 ENSG00000109103 UNC119 HRG4|IMD13|POC7|POC7A unc-119 lipid binding chaperone protein-coding 366.334-9 chr3 118875254 118875473 + 2.66667 NA Intergenic Intergenic -64530 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 403.667-5 chr5 150847224 150847570 + 2.66667 NA intron (NM_001346557, intron 1 of 3) intron (NM_001346557, intron 1 of 3) 874 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 822.334 chr5 115841288 115842104 + 2.66667 NA promoter-TSS (NM_001318094) promoter-TSS (NM_001318094) -131 NR_033363 9140 Hs.264482 NM_004707 ENSG00000145782 ATG12 APG12|APG12L|FBR93|HAPG12 autophagy related 12 protein-coding 910.334-2 chr5 138178686 138179298 + 2.66667 NA promoter-TSS (NM_001300962) promoter-TSS (NM_001300962) -120 NM_005733 10112 Hs.718626 NM_005733 ENSG00000112984 KIF20A MKLP2|RAB6KIFL kinesin family member 20A protein-coding 575.834-2 chr2 714219 714754 + 2.66667 NA Intergenic MLT1I|LTR|ERVL-MaLR -37080 NM_152834 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 712.501 chr5 138579022 138579875 + 2.66667 NA Intergenic Intergenic -4047 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 865.667-3 chr6 64012173 64012874 + 2.66667 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 205687 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 611.5-2 chr17 64145733 64146130 + 2.66667 NA promoter-TSS (NR_132278) promoter-TSS (NR_132278) -39 NR_132278 105376843 Hs.405444 NR_132278 ENSG00000266402 SNHG25 - small nucleolar RNA host gene 25 ncRNA 477.001 chr8 61618742 61619035 + 2.66667 NA intron (NM_004318, intron 14 of 24) intron (NM_004318, intron 14 of 24) 70923 NM_032468 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 1330.17-2 chr3 195521674 195523015 + 2.66667 NA intron (NR_133014, intron 3 of 4) intron (NR_133014, intron 3 of 4) 20981 NM_001291505 5504 Hs.535731 NM_006241 ENSG00000184203 PPP1R2 IPP-2|IPP2|PPP1R2A protein phosphatase 1 regulatory inhibitor subunit 2 protein-coding 455.5-3 chr14 21917667 21918046 + 2.66667 NA Intergenic Intergenic -246839 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 334.334-3 chr11 112958777 112959028 + 2.66667 NA TTS (NR_120563) TTS (NR_120563) -2518 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 364.5-9 chr3 4271775 4272457 + 2.66667 NA Intergenic Intergenic -31188 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 325.667-6 chr3 153029419 153029592 + 2.66667 NA Intergenic Intergenic -132721 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 751.334-2 chr7 23862799 23863306 + 2.66667 NA Intergenic Intergenic 152833 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 402.666 chr10 26774780 26775010 + 2.66667 NA intron (NM_001012750, intron 3 of 10) L1M5|LINE|L1 77194 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 589.5-2 chr6 164922000 164922459 + 2.66667 NA Intergenic L1ME3E|LINE|L1 -100166 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 285.5-15 chr2 178500314 178500656 + 2.66667 NA intron (NM_019091, intron 6 of 7) intron (NM_019091, intron 6 of 7) 20028 NM_019091 65977 Hs.41086 NM_019091 ENSG00000116095 PLEKHA3 FAPP1 pleckstrin homology domain containing A3 protein-coding 718.333 chr1 31422287 31422977 + 2.66667 NA intron (NM_001199039, intron 2 of 10) L2c|LINE|L2 8819 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 174.667-42 chr4 176237742 176237835 + 2.66667 NA intron (NM_080874, intron 1 of 6) intron (NM_080874, intron 1 of 6) 31434 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 382.667-10 chr8 87443948 87444098 + 2.66667 NA Intergenic L1MEg|LINE|L1 429992 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 1371.5-2 chr2 25376075 25377111 + 2.66667 NA TTS (NM_021907) TTS (NM_021907) -34003 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 554.001 chr5 172932535 172932827 + 2.66667 NA intron (NM_001031711, intron 8 of 9) intron (NM_001031711, intron 8 of 9) 17598 NR_162113 113218510 NR_162113 MIR10523 - microRNA 10523 ncRNA 879.833-4 chr7 104156220 104157528 + 2.66667 NA intron (NM_002553, intron 12 of 13) intron (NM_002553, intron 12 of 13) 51139 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 509.834 chr12 65828257 65828888 + 2.66667 NA intron (NM_001300918, intron 2 of 4) intron (NM_001300918, intron 2 of 4) -1598 NR_026825 204010 Hs.558686 NR_026825 ENSG00000241749 RPSAP52 RPSA_17_1251 ribosomal protein SA pseudogene 52 pseudo 480-5 chr5 157253090 157253713 + 2.66667 NA 3' UTR (NM_005546, exon 17 of 17) 3' UTR (NM_005546, exon 17 of 17) -12722 NM_001037333 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 503-5 chr4 71183881 71184437 + 2.66667 NA Intergenic MIR|SINE|MIR -3100 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 725.667-3 chr17 64418884 64419319 + 2.66667 NA Intergenic AluSz6|SINE|Alu -28241 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 308.167-9 chr2 72367950 72368138 + 2.66667 NA intron (NR_135774, intron 17 of 19) L1MA2|LINE|L1 -220182 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 751.833 chr15 92082438 92083191 + 2.66667 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 228510 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 580.167-8 chr7 99040317 99040676 + 2.66667 NA exon (NM_181349, exon 13 of 18) exon (NM_181349, exon 13 of 18) 27331 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 405-12 chr6 11616970 11617216 + 2.66667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 79344 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 449.167-5 chr7 7640490 7641017 + 2.66667 NA promoter-TSS (NM_001302348) promoter-TSS (NM_001302348) 1 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 283.5-2 chr1 172429232 172429547 + 2.66667 NA intron (NM_139240, intron 1 of 6) intron (NM_139240, intron 1 of 6) 8704 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 411.999 chr17 51558775 51559043 + 2.66667 NA Intergenic Intergenic 123482 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 714.668 chr1 65209234 65209714 + 2.66667 NA intron (NM_001005353, intron 3 of 5) intron (NM_001005353, intron 3 of 5) -55220 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 643.5-2 chr12 56221931 56222457 + 2.66667 NA promoter-TSS (NR_040053) promoter-TSS (NR_040053) -225 NM_194359 10193 Hs.524502 NM_005785 ENSG00000181852 RNF41 FLRF|NRDP1|SBBI03 ring finger protein 41 protein-coding 321.5-13 chr20 13458830 13459012 + 2.66667 NA intron (NM_017714, intron 11 of 13) intron (NM_017714, intron 11 of 13) 180011 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 516.334-2 chr7 11373295 11373751 + 2.66667 NA 3' UTR (NM_015204, exon 27 of 27) 3' UTR (NM_015204, exon 27 of 27) 399651 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 491-8 chr4 158253561 158253780 + 2.66667 NA 3' UTR (NM_018342, exon 13 of 13) 3' UTR (NM_018342, exon 13 of 13) 43184 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 378-9 chr17 21457120 21457426 + 2.66667 NA Intergenic Intergenic 80916 NM_021012 3768 Hs.200629 NM_021012 ENSG00000184185 KCNJ12 IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x potassium voltage-gated channel subfamily J member 12 protein-coding 218.334-9 chr4 89434473 89434637 + 2.66667 NA Intergenic Intergenic -126755 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 487.167-5 chr8 101635508 101636026 + 2.66667 NA intron (NM_024915, intron 11 of 15) intron (NM_024915, intron 11 of 15) 143328 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 510.501 chr10 91410784 91411111 + 2.66667 NA intron (NM_182765, intron 1 of 20) (TGCC)n|Simple_repeat|Simple_repeat 662 NM_173497 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 340.834-7 chr3 95145920 95146143 + 2.66667 NA Intergenic Intergenic 207768 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 1078.67-2 chr12 55068197 55069014 + 2.66667 NA Intergenic Intergenic 48631 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 864-4 chr8 107813235 107813858 + 2.66667 NA Intergenic Intergenic 268393 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 473.834-3 chr3 81611744 81611999 + 2.66667 NA intron (NM_000158, intron 7 of 15) intron (NM_000158, intron 7 of 15) 149774 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 196.5-16 chr16 30409353 30409690 + 2.66667 NA intron (NM_001142305, intron 2 of 2) intron (NM_001142305, intron 2 of 2) 1915 NM_001142305 51333 Hs.148584 NM_016643 ENSG00000179965 ZNF771 DSC43 zinc finger protein 771 protein-coding 206.667-50 chr7 84601882 84601992 + 2.66667 NA Intergenic Intergenic 69461 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 204.167-24 chr8 118439818 118439903 + 2.66667 NA exon (NM_001363274, exon 3 of 5) exon (NM_001363274, exon 3 of 5) -181141 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 876.333 chr1 204207249 204207969 + 2.66667 NA intron (NM_198447, intron 1 of 4) intron (NM_198447, intron 1 of 4) 6379 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 475.167 chr14 56659825 56660158 + 2.66667 NA Intergenic Intergenic 80193 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 592.001 chr3 73455574 73455924 + 2.66667 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) 18883 NM_001303141 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 947.167 chr4 70183591 70184460 + 2.66667 NA Intergenic Intergenic -12502 NM_017855 54959 Hs.143811 NM_017855 ENSG00000109205 ODAM APIN odontogenic, ameloblast associated protein-coding 964.834 chr4 147590148 147590953 + 2.66667 NA Intergenic Intergenic -26847 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 755.667 chr1 68443017 68443687 + 2.66667 NA intron (NM_000329, intron 5 of 13) MER20B|DNA|hAT-Charlie 6602 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 504.501 chr2 99856012 99856347 + 2.66667 NA intron (NM_001025108, intron 6 of 23) L1MC3|LINE|L1 249404 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 428.334-2 chr10 63312423 63312745 + 2.66667 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) -43341 NM_001318153 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 715.666-3 chr5 180471190 180471586 + 2.66667 NA Intergenic MER5B|DNA|hAT-Charlie -22991 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 554.666-3 chr7 85041384 85041891 + 2.66667 NA intron (NM_152754, intron 8 of 16) intron (NM_152754, intron 8 of 16) 80294 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 450.667-7 chr7 149518169 149518358 + 2.66667 NA Intergenic L1MA4|LINE|L1 -20454 NM_152557 155061 Hs.24643 NM_152557 ENSG00000181220 ZNF746 PARIS zinc finger protein 746 protein-coding 959.667-3 chr7 8724068 8724713 + 2.66667 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 290781 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 381.334-2 chr2 108476389 108476720 + 2.66667 NA intron (NR_028063, intron 8 of 21) intron (NR_028063, intron 8 of 21) 27348 NR_028063 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 796.501 chr17 75105738 75106574 + 2.66667 NA TTS (NM_001369668) TTS (NM_001369668) -3813 NM_001304271 79637 Hs.413047 NM_024585 ENSG00000125449 ARMC7 - armadillo repeat containing 7 protein-coding 799.501-3 chr8 27726996 27727871 + 2.66667 NA Intergenic Intergenic -25666 NR_037418 100500871 NR_037418 ENSG00000265075 MIR3622B - microRNA 3622b ncRNA 205.167-24 chr4 138090572 138090694 + 2.66667 NA intron (NR_038380, intron 1 of 6) intron (NR_038380, intron 1 of 6) 1619 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 264.5-27 chr8 95278261 95278514 + 2.66667 NA intron (NR_038206, intron 1 of 4) intron (NR_038206, intron 1 of 4) -9186 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 1001.67-2 chr12 69900215 69901202 + 2.66667 NA intron (NM_182530, intron 10 of 24) intron (NM_182530, intron 10 of 24) 75481 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 801.334-2 chr6 43334426 43335314 + 2.66667 NA Intergenic Intergenic -26044 NM_206922 401262 Hs.653165 NM_206922 ENSG00000146215 CRIP3 CRP-3|TLP|TLP-A|h6LIMo cysteine rich protein 3 protein-coding 983.833 chr2 210198808 210199779 + 2.66667 NA intron (NM_001608, intron 8 of 10) intron (NM_001608, intron 8 of 10) 26154 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 633.501 chr6 144218974 144219573 + 2.66667 NA Intergenic Intergenic 68756 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 642.834 chr11 9862022 9862553 + 2.66667 NA intron (NM_030962, intron 17 of 39) intron (NM_030962, intron 17 of 39) 23145 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 932.333 chr22 39532793 39533383 + 2.66667 NA promoter-TSS (NR_130151) promoter-TSS (NR_130151) -340 NR_130151 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 962.668 chr2 49687122 49687983 + 2.66667 NA Intergenic L2c|LINE|L2 286651 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 345.667-11 chr8 15277283 15277490 + 2.66667 NA Intergenic L1MC1|LINE|L1 -38955 NM_139167 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 490.501 chr8 61652614 61652982 + 2.66667 NA intron (NM_032468, intron 5 of 14) intron (NM_032468, intron 5 of 14) 37013 NM_032468 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 1062-2 chr20 1437034 1438085 + 2.66667 NA Intergenic L1ME4b|LINE|L1 30133 NR_038164 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 468.833-6 chr4 155809755 155810050 + 2.66667 NA Intergenic Intergenic 50881 NM_001291954 2983 Hs.77890 NM_000857 ENSG00000061918 GUCY1B1 GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3 guanylate cyclase 1 soluble subunit beta 1 protein-coding 657.5-4 chr8 76367597 76368393 + 2.66667 NA Intergenic Intergenic -38659 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 261.834-5 chr3 179321620 179321981 + 2.66667 NA Intergenic Intergenic -1231 NM_001303426 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 452.334-7 chrX 20067404 20067761 + 2.66667 NA intron (NM_152780, intron 1 of 15) MIR|SINE|MIR 49058 NM_001168467 256714 Hs.127951 NM_152780 ENSG00000184368 MAP7D2 - MAP7 domain containing 2 protein-coding 449.334-2 chr2 136737736 136737965 + 2.66667 NA Intergenic Intergenic -27695 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 512.834 chr8 95145020 95145275 + 2.66667 NA intron (NM_024613, intron 1 of 1) intron (NM_024613, intron 1 of 1) 11362 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 487.001-2 chr8 115004676 115004919 + 2.66667 NA Intergenic MLT1A1|LTR|ERVL-MaLR 663216 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 251.834-9 chr8 129815758 129815906 + 2.66667 NA Intergenic L1PA16|LINE|L1 -29208 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 417.833-10 chr3 170848479 170848765 + 2.66667 NA Intergenic Intergenic 21573 NR_135259 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 561.667 chr1 196723111 196723486 + 2.66667 NA intron (NM_000186, intron 11 of 21) L1PA15-16|LINE|L1 -51502 NM_021023 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 357.666-2 chr21 38218993 38219278 + 2.66667 NA Intergenic Intergenic -10791 NM_001276437 3772 Hs.411299 NM_002243 ENSG00000157551 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium voltage-gated channel subfamily J member 15 protein-coding 1093.83 chr10 23293049 23293931 + 2.66667 NA intron (NM_001365862, intron 5 of 15) intron (NM_001365862, intron 5 of 15) -50467 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 584.667-2 chr5 167397658 167397924 + 2.66667 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -175868 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 732.5-2 chr6 159862836 159863743 + 2.66667 NA Intergenic Intergenic -27699 NM_002377 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 415.5-5 chr20 22363092 22363311 + 2.66667 NA Intergenic L1MB3|LINE|L1 57442 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 244.667-22 chr3 63853462 63853573 + 2.66667 NA intron (NM_025075, intron 1 of 7) MIRb|SINE|MIR -7128 NR_104326 100874039 NR_104326 ENSG00000240549 THOC7-AS1 - THOC7 antisense RNA 1 ncRNA 358.667-4 chr2 39598736 39599081 + 2.66667 NA intron (NR_037875, intron 5 of 5) Arthur1|DNA|hAT-Tip100 -66590 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 608-2 chr3 161274918 161275223 + 2.66667 NA Intergenic MER20B|DNA|hAT-Charlie 53780 NM_015938 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 188.833-25 chr20 22106469 22106757 + 2.66667 NA Intergenic Intergenic 52523 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 765.166-2 chr2 196276926 196277416 + 2.66667 NA intron (NM_020760, intron 15 of 28) intron (NM_020760, intron 15 of 28) 17147 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 720.667 chr1 154335000 154335757 + 2.66667 NA intron (NM_001370597, intron 11 of 27) intron (NM_001370597, intron 11 of 27) 6580 NM_001367934 57198 Hs.435700 NM_020452 ENSG00000143515 ATP8B2 ATPID ATPase phospholipid transporting 8B2 protein-coding 290.334 chr1 10960830 10961250 + 2.66667 NA intron (NM_001366227, intron 3 of 10) intron (NM_001366227, intron 3 of 10) 5647 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 612.667-2 chr22 25448872 25449482 + 2.66667 NA intron (NR_033734, intron 1 of 4) intron (NR_033734, intron 1 of 4) 1090 NR_033733 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 632.834 chr1 184981859 184982725 + 2.66667 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -7784 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 831-2 chr6 165884499 165885453 + 2.66667 NA Intergenic Intergenic -102575 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 168.667-23 chr2 213309800 213309908 + 2.66667 NA intron (NR_047660, intron 3 of 14) L2a|LINE|L2 25390 NR_047660 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 1113.67-2 chr7 125671155 125671761 + 2.66667 NA Intergenic Intergenic -407167 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 304.167-2 chr12 121479045 121479298 + 2.66667 NA intron (NM_001005366, intron 12 of 22) AluYm1|SINE|Alu -34819 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 430.667-5 chr5 152698206 152698410 + 2.66667 NA intron (NR_109877, intron 3 of 4) (TGTGTATA)n|Simple_repeat|Simple_repeat 274041 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 1239 chr11 58653772 58654595 + 2.66667 NA Intergenic Intergenic 31518 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 284.334-5 chr2 51775699 51775874 + 2.66667 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -594862 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 526.334 chr11 59176328 59176703 + 2.66667 NA intron (NM_015177, intron 1 of 8) L2a|LINE|L2 4383 NM_015177 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 615.834 chr9 385732 386307 + 2.66667 NA intron (NM_001190458, intron 21 of 45) intron (NM_001190458, intron 21 of 45) -84272 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 304.834-3 chr7 88653444 88653654 + 2.66667 NA Intergenic L1MEi|LINE|L1 -106151 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 556.333-2 chr15 26866590 26867064 + 2.66667 NA promoter-TSS (NM_000810) promoter-TSS (NM_000810) -235 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 488.166 chr19 30315803 30316099 + 2.66667 NA Intergenic L1ME3G|LINE|L1 -56433 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 966.667-2 chr3 112111737 112112232 + 2.66667 NA promoter-TSS (NR_030292) promoter-TSS (NR_030292) -817 NR_030292 693152 NR_030292 ENSG00000207940 MIR567 MIRN567|hsa-mir-567 microRNA 567 ncRNA 430.833-2 chr13 30112823 30113226 + 2.66667 NA Intergenic Intergenic -4149 NR_046998 100874146 Hs.574116 NR_046998 ENSG00000224511 LINC00365 - long intergenic non-protein coding RNA 365 ncRNA 355.834-2 chr10 108749534 108749801 + 2.66667 NA Intergenic Intergenic -680374 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 638.001 chr8 130062239 130062702 + 2.66667 NA intron (NM_001362925, intron 27 of 29) intron (NM_001362925, intron 27 of 29) 22298 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 254.334-4 chr17 33927995 33928158 + 2.66667 NA intron (NM_001094, intron 1 of 9) Charlie22a|DNA|hAT-Charlie 228730 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 397.834 chr21 43975630 43975868 + 2.66667 NA intron (NM_001369881, intron 7 of 9) (T)n|Simple_repeat|Simple_repeat -36560 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 398.667 chr11 82872883 82873269 + 2.66667 NA intron (NM_005040, intron 1 of 8) intron (NM_005040, intron 1 of 8) 27354 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 378.666 chr1 81230151 81230422 + 2.66667 NA Intergenic Intergenic -75906 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 969.166 chr4 74531589 74532606 + 2.66667 NA Intergenic Intergenic 86961 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 249.334-9 chr7 130293059 130293161 + 2.66667 NA promoter-TSS (NM_001163446) promoter-TSS (NM_001163446) -24 NM_016352 51200 Hs.93764 NM_016352 ENSG00000128510 CPA4 CPA3 carboxypeptidase A4 protein-coding 1064 chr11 60362778 60364081 + 2.66667 NA Intergenic Intergenic -15056 NM_206938 58475 Hs.530735 NM_021201 ENSG00000166927 MS4A7 4SPAN2|CD20L4|CFFM4|MS4A8 membrane spanning 4-domains A7 protein-coding 476-6 chr5 127757625 127757941 + 2.66667 NA intron (NM_001317938, intron 3 of 6) (AC)n|Simple_repeat|Simple_repeat 54394 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 427.333-2 chr18 46073903 46074166 + 2.66667 NA Intergenic Intergenic -1774 NM_024430 9050 Hs.567384 NM_024430 ENSG00000152229 PSTPIP2 MAYP proline-serine-threonine phosphatase interacting protein 2 protein-coding 878.667 chr7 129163663 129164379 + 2.66667 NA intron (NM_178562, intron 4 of 7) intron (NM_178562, intron 4 of 7) 19314 NM_178562 340348 Hs.27267 NM_178562 ENSG00000158457 TSPAN33 PEN|PEN.|TSPAN-33 tetraspanin 33 protein-coding 724.666 chr17 76014011 76014445 + 2.66667 NA intron (NM_001988, intron 18 of 21) intron (NM_001988, intron 18 of 21) 13078 NM_001988 2125 Hs.500635 NM_001988 ENSG00000167880 EVPL EVPK envoplakin protein-coding 425.5-6 chr2 101767024 101767311 + 2.66667 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 69460 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 593.999 chr6 75205936 75206403 + 2.66667 NA promoter-TSS (NM_004370) promoter-TSS (NM_004370) -116 NM_080645 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 458.667-3 chrX 133839329 133839552 + 2.66667 NA intron (NM_001164619, intron 1 of 6) L1MA9|LINE|L1 -58003 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 900.333 chr11 120334750 120335380 + 2.66667 NA Intergenic Intergenic -1348 NM_001198665 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 485.334-2 chr8 109698016 109698290 + 2.66667 NA Intergenic L1ME4a|LINE|L1 -6362 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 495.833 chr1 23751460 23751842 + 2.66667 NA exon (NM_003198, exon 4 of 11) exon (NM_003198, exon 4 of 11) 8285 NM_003198 6924 Hs.15535 NM_003198 ENSG00000011007 ELOA SIII|SIII p110|TCEB3|TCEB3A elongin A protein-coding 866.333-2 chr3 65672731 65673336 + 2.66667 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -220783 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 1000.33 chr1 228500864 228501374 + 2.66667 NA Intergenic MER77B|LTR|ERVL 11169 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 1057.83-2 chr7 88789156 88789853 + 2.66667 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) 6233 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 460.667-2 chr12 15304849 15305117 + 2.66667 NA Intergenic L1M1|LINE|L1 -17525 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 441.334-3 chr4 85588358 85588682 + 2.66667 NA intron (NM_001025616, intron 2 of 9) L2c|LINE|L2 113370 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 879 chr17 47840903 47841622 + 2.66667 NA promoter-TSS (NM_001145023) promoter-TSS (NM_001145023) 11 NM_138355 90507 Hs.239718 NM_138355 ENSG00000141295 SCRN2 Ses2 secernin 2 protein-coding 368.334-3 chr15 36445147 36445361 + 2.66667 NA Intergenic Intergenic -134372 NM_001321757 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 355-12 chr5 34736749 34737072 + 2.66667 NA intron (NM_001145525, intron 4 of 19) MER1B|DNA|hAT-Charlie 49351 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 630.834 chr1 27300743 27301371 + 2.66667 NA intron (NM_001276252, intron 12 of 15) intron (NM_001276252, intron 12 of 15) -21088 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 475.001 chr14 54312279 54312567 + 2.66667 NA Intergenic Intergenic -84445 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 1297.33 chr2 106596637 106597851 + 2.66667 NA Intergenic Intergenic 109880 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 616.833-3 chr7 144835844 144836428 + 2.66667 NA promoter-TSS (NM_001350885) promoter-TSS (NM_001350885) -83 NM_001350886 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 505.5-7 chr6 63731041 63731403 + 2.66667 NA intron (NM_001142800, intron 41 of 42) L1ME3G|LINE|L1 -75614 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 442.999 chr12 12035953 12036238 + 2.66667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -13766 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 1032.83 chr20 43538018 43538495 + 2.66667 NA intron (NM_032107, intron 19 of 21) intron (NM_032107, intron 19 of 21) -20771 NM_170693 10110 Hs.300863 NM_016276 ENSG00000101049 SGK2 H-SGK2|dJ138B7.2 serum/glucocorticoid regulated kinase 2 protein-coding 798.001 chr11 122581221 122581712 + 2.66667 NA Intergenic Intergenic -74256 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 463.167-3 chr2 79043125 79043434 + 2.66667 NA Intergenic L1ME1|LINE|L1 17577 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 724-2 chr2 104412289 104412954 + 2.66667 NA non-coding (NR_135589, exon 2 of 2) non-coding (NR_135589, exon 2 of 2) 1410 NR_135589 101927331 Hs.352254 NR_135589 ENSG00000225765 LINC01831 - long intergenic non-protein coding RNA 1831 ncRNA 731.834-2 chr6 45608084 45608889 + 2.66667 NA Intergenic Intergenic 186211 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 488.667-2 chr19 52189620 52190050 + 2.66667 NA promoter-TSS (NR_033500) promoter-TSS (NR_033500) -217 NR_033500 5518 Hs.467192 NM_014225 ENSG00000105568 PPP2R1A MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A protein phosphatase 2 scaffold subunit Aalpha protein-coding 368.667-3 chr1 182080961 182081409 + 2.66667 NA Intergenic L2a|LINE|L2 -19473 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 1016.67 chr1 20493629 20494475 + 2.66667 NA Intergenic Intergenic -7842 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 742.167 chr2 41853587 41854105 + 2.66667 NA Intergenic Intergenic -23709 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 663.166-2 chr8 130149037 130149707 + 2.66667 NA intron (NM_001362925, intron 14 of 29) intron (NM_001362925, intron 14 of 29) -64604 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 777.334 chr8 71610564 71610990 + 2.66667 NA Intergenic Intergenic -62683 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 427.667-4 chr19 49869464 49869798 + 2.66667 NA 3' UTR (NM_001278160, exon 5 of 5) 3' UTR (NM_001278160, exon 5 of 5) -2055 NM_007254 11284 Hs.78016 NM_007254 ENSG00000039650 PNKP AOA4|EIEE10|MCSZ|PNK polynucleotide kinase 3'-phosphatase protein-coding 440.667-3 chr11 132065000 132065279 + 2.66667 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) 154321 NR_147851 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 750.667 chr10 50310842 50311258 + 2.66667 NA intron (NM_147156, intron 9 of 10) intron (NM_147156, intron 9 of 10) -62440 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 712-3 chr4 27861115 27861928 + 2.66667 NA Intergenic L1M3f|LINE|L1 644042 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 341.334-5 chr6 9332878 9333130 + 2.66667 NA Intergenic MIR3|SINE|MIR 680795 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 482-7 chr20 48625574 48625876 + 2.66667 NA 3' UTR (NM_020820, exon 40 of 40) 3' UTR (NM_020820, exon 40 of 40) 202274 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 678.667 chr15 82047086 82047576 + 2.66667 NA Intergenic CpG-8510 -1313 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 520.667-4 chr7 100559917 100560505 + 2.66667 NA intron (NM_006076, intron 6 of 11) AluSz6|SINE|Alu 13689 NM_001348680 100316904 Hs.633863 NM_001168682 ENSG00000205307 SAP25 - Sin3A associated protein 25 protein-coding 1030.5 chr14 47538901 47539630 + 2.66667 NA intron (NM_001113498, intron 1 of 16) LTR41B|LTR|ERVL 135689 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 237.833-12 chr2 78705196 78705352 + 2.66667 NA Intergenic Intergenic 159743 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 864.001 chr7 31372847 31373784 + 2.66667 NA Intergenic Intergenic -32589 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 340.667-10 chr4 165356066 165356339 + 2.66667 NA Intergenic MIRb|SINE|MIR -22806 NM_001873 1363 Hs.75360 NM_001873 ENSG00000109472 CPE CPH carboxypeptidase E protein-coding 650.333-2 chr17 27076976 27077576 + 2.66667 NA intron (NR_135673, intron 2 of 3) AluJb|SINE|Alu 11965 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 473.5-6 chr8 17919543 17919791 + 2.66667 NA Intergenic Intergenic -3190 NM_001315508 5108 Hs.491148 NM_006197 ENSG00000078674 PCM1 PTC4|RET/PCM-1 pericentriolar material 1 protein-coding 568.001 chr7 151244520 151244762 + 2.66667 NA intron (NM_001003801, intron 2 of 12) intron (NM_001003801, intron 2 of 12) 4053 NM_001003801 6604 Hs.647067 NM_003078 ENSG00000082014 SMARCD3 BAF60C|CRACD3|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 614.501 chr3 116517476 116517772 + 2.66667 NA Intergenic Intergenic -34849 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 734.333-2 chr11 61129861 61130398 + 2.66667 NA TTS (NM_017966) TTS (NM_017966) 27640 NM_014207 921 Hs.58685 NM_014207 ENSG00000110448 CD5 LEU1|T1 CD5 molecule protein-coding 334.5-14 chr19 51367600 51367878 + 2.66667 NA intron (NM_152353, intron 2 of 3) CpG-15033 1264 NM_152353 125875 Hs.720536 NM_152353 ENSG00000160318 CLDND2 - claudin domain containing 2 protein-coding 462.5 chr15 87369395 87369749 + 2.66667 NA Intergenic L1PA16|LINE|L1 -207357 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 704-3 chr3 149966881 149967369 + 2.66667 NA intron (NM_053024, intron 2 of 2) intron (NM_053024, intron 2 of 2) 3770 NM_053024 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 339.334-5 chr2 211656047 211656295 + 2.66667 NA intron (NM_001042599, intron 16 of 26) L1ME3A|LINE|L1 770189 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 931.333 chr14 61025367 61025933 + 2.66667 NA intron (NR_033344, intron 5 of 16) intron (NR_033344, intron 5 of 16) -43960 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 414.666-2 chr4 98084107 98084402 + 2.66667 NA intron (NM_174952, intron 5 of 10) L1ME2|LINE|L1 59222 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 1238.84 chr16 81006270 81007937 + 2.66667 NA promoter-TSS (NM_001351968) promoter-TSS (NM_001351968) -184 NR_147841 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 517-5 chr9 117159805 117160040 + 2.66667 NA intron (NM_001365068, intron 3 of 22) intron (NM_001365068, intron 3 of 22) 21279 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 444.666-4 chr6 74574958 74575279 + 2.66667 NA intron (NR_110856, intron 2 of 3) MLT1L|LTR|ERVL-MaLR 505667 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 420.167-8 chr7 50230106 50230398 + 2.66667 NA Intergenic Intergenic -73812 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 506.667-6 chr2 74690384 74690742 + 2.66667 NA Intergenic Intergenic 36316 NM_001271661 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 542.334 chr2 49770649 49771037 + 2.66667 NA Intergenic MLT1A|LTR|ERVL-MaLR 203360 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 386-11 chr8 67173668 67173865 + 2.66667 NA intron (NM_001363133, intron 22 of 27) MIRb|SINE|MIR 89918 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 665.334 chr2 6526349 6526782 + 2.66667 NA Intergenic Intergenic 107222 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 320.5-12 chr5 7887057 7887531 + 2.66667 NA intron (NR_157171, intron 7 of 13) intron (NR_157171, intron 7 of 13) 18146 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 274.666-5 chr2 102383215 102383382 + 2.66667 NA intron (NM_003855, intron 6 of 10) L1MEg2|LINE|L1 27015 NM_001282399 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 946.333 chr10 126386713 126387755 + 2.66667 NA intron (NM_001288974, intron 1 of 18) intron (NM_001288974, intron 1 of 18) 1243 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 967-2 chr12 22709173 22710012 + 2.66667 NA Intergenic Intergenic 84421 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 312.667-15 chr3 196818683 196818894 + 2.66667 NA intron (NM_002577, intron 12 of 14) MIR|SINE|MIR -49068 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 493.5-5 chr2 231103925 231104753 + 2.66667 NA intron (NM_001191037, intron 16 of 23) intron (NM_001191037, intron 16 of 23) 20703 NM_001320758 3357 Hs.421649 NM_000867 ENSG00000135914 HTR2B 5-HT(2B)|5-HT-2B|5-HT2B 5-hydroxytryptamine receptor 2B protein-coding 349.333-11 chr9 31137104 31137315 + 2.66667 NA Intergenic Intergenic 244281 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 811.334 chr1 77147752 77148432 + 2.66667 NA intron (NM_005482, intron 9 of 10) intron (NM_005482, intron 9 of 10) 71338 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 634.501 chr15 77024006 77024707 + 2.66667 NA intron (NR_135552, intron 3 of 11) intron (NR_135552, intron 3 of 11) 29230 NM_001321135 9051 Hs.129758 NM_003978 ENSG00000140368 PSTPIP1 CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP proline-serine-threonine phosphatase interacting protein 1 protein-coding 757.334 chr1 26363761 26364414 + 2.66667 NA intron (NM_001114759, intron 4 of 5) intron (NM_001114759, intron 4 of 5) 8707 NM_001114759 257101 Hs.353208 NM_173574 ENSG00000176083 ZNF683 Hobit zinc finger protein 683 protein-coding 343.833-9 chr3 97444367 97444539 + 2.66667 NA intron (NM_001278300, intron 2 of 12) intron (NM_001278300, intron 2 of 12) 4846 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 718.167 chr17 69060245 69060958 + 2.66667 NA intron (NM_080283, intron 1 of 38) intron (NM_080283, intron 1 of 38) 326 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 393.667-2 chr12 124399792 124400225 + 2.66667 NA intron (NM_001077261, intron 17 of 47) MER102c|DNA|hAT-Charlie -62766 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 1033.5 chr2 64330396 64331296 + 2.66667 NA Intergenic Intergenic -9913 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 846.001 chr2 28594174 28594902 + 2.66667 NA intron (NR_138141, intron 13 of 35) intron (NR_138141, intron 13 of 35) 28181 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 408-7 chr5 121359119 121359413 + 2.66667 NA Intergenic Intergenic 36716 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 1244.17 chr12 4276721 4277905 + 2.66667 NA intron (NM_001759, intron 2 of 4) intron (NM_001759, intron 2 of 4) -1129 NR_125790 103752584 Hs.577711 NR_125790 ENSG00000255920 CCND2-AS1 CCND2-AS2 CCND2 antisense RNA 1 ncRNA 634.834 chr18 61502459 61502939 + 2.66667 NA intron (NM_031891, intron 4 of 11) intron (NM_031891, intron 4 of 11) 169269 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 902.167 chr10 95601140 95602298 + 2.66667 NA Intergenic Intergenic -40348 NM_015385 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 827.167 chr11 4892088 4892827 + 2.66667 NA Intergenic L2c|LINE|L2 10757 NM_001004759 401665 NM_001004759 ENSG00000176900 OR51T1 OR11-26 olfactory receptor family 51 subfamily T member 1 protein-coding 574.5 chr17 8785644 8786406 + 2.66667 NA Intergenic Intergenic 13340 NM_152599 162387 Hs.213603 NM_152599 ENSG00000185156 MFSD6L - major facilitator superfamily domain containing 6 like protein-coding 598.166 chr1 208654095 208654528 + 2.66667 NA Intergenic Intergenic -74377 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 602.834-3 chr2 217496295 217496615 + 2.66667 NA intron (NR_026597, intron 2 of 12) MER72B|LTR|ERV1 213722 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 460.667-9 chr3 5600449 5600647 + 2.66667 NA Intergenic Intergenic -350293 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 1283.83 chr2 88903157 88904380 + 2.66667 NA Intergenic Intergenic 91398 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 1075.67 chr7 141533180 141534172 + 2.66667 NA Intergenic Intergenic -17734 NM_001364948 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 700.001-2 chr9 71249691 71250265 + 2.66667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -128357 NM_001366149 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 926.834-2 chr7 47265615 47266612 + 2.66667 NA Intergenic MIR|SINE|MIR 198690 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 473.667-2 chr19 28324529 28324768 + 2.66667 NA Intergenic MER4D1|LTR|ERV1 -282040 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 511.167 chr4 53706407 53707037 + 2.66667 NA intron (NR_125918, intron 1 of 2) intron (NR_125918, intron 1 of 2) 10821 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 578.167-3 chr22 32836203 32836832 + 2.66667 NA intron (NM_000362, intron 1 of 4) intron (NM_000362, intron 1 of 4) 35701 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 475.667-4 chr16 52069804 52070274 + 2.66667 NA intron (NM_001242473, intron 1 of 5) intron (NM_001242473, intron 1 of 5) 3896 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 527.834 chr20 7159152 7159434 + 2.66667 NA intron (NR_110609, intron 5 of 7) intron (NR_110609, intron 5 of 7) 94909 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 400.168-2 chr8 67248994 67249246 + 2.66667 NA intron (NM_006421, intron 19 of 38) intron (NM_006421, intron 19 of 38) 94661 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 1216.83 chr17 54172220 54173433 + 2.66667 NA Intergenic Intergenic 349899 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 633.499 chr2 134460460 134461176 + 2.66667 NA intron (NM_030923, intron 6 of 7) intron (NM_030923, intron 6 of 7) 206746 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 1006.5 chr11 6353259 6354046 + 2.66667 NA Intergenic Intergenic -33151 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 CAVIN3 HSRBC|PRKCDBP|SRBC|cavin-3 caveolae associated protein 3 protein-coding 279.167-10 chr3 114404723 114405023 + 2.66667 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -21231 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 279.334-7 chr5 72523075 72523269 + 2.66667 NA Intergenic L1MEg|LINE|L1 -15762 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 692.666 chr12 65306314 65306946 + 2.66667 NA intron (NM_001193461, intron 1 of 6) intron (NM_001193461, intron 1 of 6) 27643 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 406.001-3 chr4 75494039 75494242 + 2.66667 NA exon (NM_001278536, exon 3 of 8) exon (NM_001278536, exon 3 of 8) 15156 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 674.167-3 chr21 35840272 35840714 + 2.66667 NA Intergenic Intergenic -45952 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 545.5 chr18 58494033 58494481 + 2.66667 NA intron (NM_052947, intron 12 of 12) intron (NM_052947, intron 12 of 12) -43105 NR_039899 100616357 NR_039899 ENSG00000207778 MIR3591 - microRNA 3591 ncRNA 1002.33-2 chr6 6556578 6557528 + 2.66667 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -31667 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 512.501-2 chr9 30796999 30797268 + 2.66667 NA Intergenic MLT1H2|LTR|ERVL-MaLR -388679 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 539-2 chr5 120653735 120654256 + 2.66667 NA intron (NM_001308088, intron 3 of 3) MLT1J|LTR|ERVL-MaLR 122531 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 1358.17-4 chr2 198296421 198297283 + 2.66667 NA Intergenic Intergenic 78245 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 460.667-4 chr17 61002151 61002766 + 2.66667 NA intron (NM_001330413, intron 15 of 25) intron (NM_001330413, intron 15 of 25) 324607 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 961.167 chr10 69644370 69645020 + 2.66667 NA Intergenic Intergenic 14448 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 1100.67-2 chr14 92686642 92687349 + 2.66667 NA intron (NM_024832, intron 9 of 9) CpG 61632 NM_005606 5641 Hs.18069 NM_005606 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 500-4 chr2 160061010 160061226 + 2.66667 NA intron (NM_001007267, intron 1 of 26) intron (NM_001007267, intron 1 of 26) 1497 NM_001195641 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 358.167-4 chr15 68384524 68384849 + 2.66667 NA intron (NM_001004439, intron 2 of 29) intron (NM_001004439, intron 2 of 29) 47477 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 458.001-2 chr12 105705632 105705880 + 2.66667 NA intron (NR_110108, intron 1 of 2) L1MA2|LINE|L1 -1018 NR_110111 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 559.834 chr7 104231348 104231829 + 2.66667 NA Intergenic Intergenic -23541 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 587.667-7 chr8 129710589 129710999 + 2.66667 NA Intergenic Intergenic -30555 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 641.167-2 chr3 128608274 128608983 + 2.66667 NA Intergenic CpG -32542 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 488-4 chr2 198374256 198374680 + 2.66667 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 629 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 941.001 chr15 46303984 46304869 + 2.66667 NA Intergenic Intergenic 599231 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 239-13 chr17 29748776 29748923 + 2.66667 NA intron (NM_033389, intron 2 of 14) L1M5|LINE|L1 12583 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 893.834 chr4 176375769 176376458 + 2.66667 NA Intergenic Intergenic 56147 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 702.334-2 chr19 2887504 2887959 + 2.66667 NA Intergenic Intergenic -13197 NM_173480 126295 Hs.591378 NM_173480 ENSG00000171970 ZNF57 ZNF424 zinc finger protein 57 protein-coding 383.667-4 chr19 49987070 49987380 + 2.66667 NA intron (NM_001308420, intron 12 of 12) L2|LINE|L2 17561 NM_001348364 400709 Hs.568076 NM_001348364 SIGLEC16 SIGLECP16|Siglec-P16 sialic acid binding Ig like lectin 16 (gene/pseudogene) protein-coding 833.667 chr12 115917178 115917820 + 2.66667 NA Intergenic Intergenic 231155 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 602 chr12 43282047 43282380 + 2.66667 NA Intergenic Intergenic 126898 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 625.167-2 chr3 186540277 186540733 + 2.66667 NA intron (NM_017541, intron 1 of 2) intron (NM_017541, intron 1 of 2) 3875 NM_017541 1427 Hs.376209 NM_017541 ENSG00000213139 CRYGS CRYG8|CTRCT20 crystallin gamma S protein-coding 983.501 chr1 41578891 41579526 + 2.66667 NA intron (NM_024503, intron 4 of 8) intron (NM_024503, intron 4 of 8) -94525 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 329.333-4 chr13 46649963 46650203 + 2.66667 NA intron (NM_001164213, intron 1 of 18) intron (NM_001164213, intron 1 of 18) 96913 NM_001164213 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 686.667 chr10 108358997 108359433 + 2.66667 NA Intergenic Intergenic -289922 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 311.999-2 chr6 118581030 118581239 + 2.66667 NA intron (NM_001042475, intron 2 of 12) HUERS-P3-int|LTR|ERV1 32838 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 458-4 chr2 75112401 75112628 + 2.66667 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) 21702 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 907.167 chr22 43385439 43386420 + 2.66667 NA Intergenic Intergenic -14402 NR_146918 105373054 NR_146918 ENSG00000236117 LINC01639 - long intergenic non-protein coding RNA 1639 ncRNA 662 chr10 50937291 50937695 + 2.66667 NA Intergenic Intergenic -51818 NM_138932 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 897.833 chr2 189142719 189143602 + 2.66667 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) -10049 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 917.834 chr10 110893457 110894152 + 2.66667 NA intron (NM_001199492, intron 8 of 11) intron (NM_001199492, intron 8 of 11) -4286 NR_039828 100616113 NR_039828 ENSG00000284482 MIR4680 - microRNA 4680 ncRNA 774.833-2 chr3 197256656 197257267 + 2.66667 NA intron (NM_001366216, intron 4 of 23) intron (NM_001366216, intron 4 of 23) 36987 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 505.834 chr1 94514040 94514259 + 2.66667 NA intron (NM_002858, intron 21 of 22) intron (NM_002858, intron 21 of 22) 27610 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 1462.33 chr1 67849995 67851478 + 2.66667 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -17269 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 575-2 chr2 127355379 127355875 + 2.66667 NA Intergenic Tigger1|DNA|TcMar-Tigger -12398 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 771.666-2 chr7 104160357 104161035 + 2.66667 NA intron (NM_002553, intron 12 of 13) intron (NM_002553, intron 12 of 13) 47317 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 389.334-4 chr22 24736360 24736665 + 2.66667 NA intron (NM_001008496, intron 12 of 20) intron (NM_001008496, intron 12 of 20) -27989 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 736.668 chr11 22702654 22703177 + 2.66667 NA intron (NM_005256, intron 2 of 6) intron (NM_005256, intron 2 of 6) 28141 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 556.667-2 chr15 85331045 85331559 + 2.66667 NA Intergenic Intergenic -49294 NR_106993 102465803 NR_106993 ENSG00000284160 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 599.833 chr1 68599908 68600531 + 2.66667 NA Intergenic Intergenic -103137 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 289.834-6 chr5 87446645 87446805 + 2.66667 NA Intergenic Intergenic -33692 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 417.5-8 chr15 73992253 73992491 + 2.66667 NA promoter-TSS (NM_001256672) promoter-TSS (NM_001256672) -24 NM_001256677 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 767.001 chr20 48905004 48905630 + 2.66667 NA Intergenic Intergenic -16394 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 774.666 chr4 45453004 45453834 + 2.66667 NA Intergenic LTR41B|LTR|ERVL 670635 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 589.167-2 chr11 87878130 87878459 + 2.66667 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -158883 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 291.667-2 chr1 84247377 84247563 + 2.66667 NA Intergenic MLT1G|LTR|ERVL-MaLR -51068 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 377.5-10 chr7 116631501 116631800 + 2.66667 NA Intergenic Intergenic -16830 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 807.834-2 chr2 217899478 217900083 + 2.66667 NA TTS (NR_106867) TTS (NR_106867) 848 NR_106867 102465485 NR_106867 ENSG00000275458 MIR6809 hsa-mir-6809 microRNA 6809 ncRNA 518 chr17 66951894 66952301 + 2.66667 NA Intergenic Intergenic -12610 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 710.001 chr3 90182399 90182693 + 2.66667 NA Intergenic AluSx1|SINE|Alu 1074925 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 298-6 chr13 108485984 108486191 + 2.66667 NA Intergenic L1MA2|LINE|L1 -109818 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 705.167 chr9 116571946 116572561 + 2.66667 NA intron (NM_014010, intron 18 of 21) intron (NM_014010, intron 18 of 21) 67970 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 336.667-7 chr18 72365137 72365373 + 2.66667 NA Intergenic L1ME3E|LINE|L1 179087 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 331.834-2 chr11 13210990 13211159 + 2.66667 NA Intergenic Intergenic -65578 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 548.334 chr1 165914343 165914769 + 2.66667 NA Intergenic FLAM_A|SINE|Alu 6635 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 504-2 chr2 40733351 40733699 + 2.66667 NA Intergenic Intergenic -221090 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 709.667-2 chr3 193572297 193572970 + 2.66667 NA Intergenic Intergenic -17738 NM_032279 84239 Hs.674423 NM_032279 ENSG00000127249 ATP13A4 - ATPase 13A4 protein-coding 367.167-2 chr2 234157630 234157873 + 2.66667 NA Intergenic HAL1b|LINE|L1 107049 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 339.833-8 chr3 86989568 86989795 + 2.66667 NA intron (NM_001320493, intron 1 of 3) intron (NM_001320493, intron 1 of 3) 1468 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 543-3 chr15 91055745 91055985 + 2.66667 NA Intergenic Intergenic 33243 NR_110104 101926911 Hs.459366 NR_110104 ENSG00000214432 VPS33B-DT - VPS33B divergent transcript ncRNA 374.5-6 chr21 16330150 16330689 + 2.66667 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -45651 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 746 chr1 44217264 44217939 + 2.66667 NA intron (NM_019100, intron 3 of 9) L2b|LINE|L2 4130 NM_001034024 55929 Hs.8008 NM_019100 ENSG00000178028 DMAP1 DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4 DNA methyltransferase 1 associated protein 1 protein-coding 626.001 chr9 92520872 92521298 + 2.66667 NA intron (NM_001197296, intron 2 of 9) L1MB5|LINE|L1 6973 NR_039817 100616351 NR_039817 ENSG00000264158 MIR4670 - microRNA 4670 ncRNA 421-6 chr5 130871414 130871894 + 2.66667 NA Intergenic Intergenic 293602 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 402.667-9 chr17 53055122 53055322 + 2.66667 NA Intergenic Intergenic 69717 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 515.5-4 chr7 155598587 155599162 + 2.66667 NA Intergenic Intergenic -28128 NM_001369813 285888 Hs.146751 NM_001103176 ENSG00000146910 CNPY1 - canopy FGF signaling regulator 1 protein-coding 309.167-4 chr11 18243877 18244384 + 2.66667 NA intron (NM_001127380, intron 3 of 3) intron (NM_001127380, intron 3 of 3) 4538 NM_001199744 100528017 Hs.731376 NM_001199744 ENSG00000255071 SAA2-SAA4 - SAA2-SAA4 readthrough protein-coding 398-7 chr17 82022956 82023303 + 2.66667 NA promoter-TSS (NM_144998) promoter-TSS (NM_144998) -176 NM_144999 201255 Hs.143774 NM_144999 ENSG00000169683 LRRC45 - leucine rich repeat containing 45 protein-coding 329.334 chr10 44023503 44023715 + 2.66667 NA Intergenic Intergenic 111207 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 769.166 chr16 11395810 11396425 + 2.66667 NA intron (NM_001370704, intron 54 of 66) MIR|SINE|MIR 50658 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 513.334-3 chr3 58005449 58005833 + 2.66667 NA Intergenic Tigger3|DNA|TcMar-Tigger -2781 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 748-4 chr14 61860013 61860778 + 2.66667 NA intron (NM_001367656, intron 1 of 7) L2|LINE|L2 47692 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 1119.83 chr5 77560292 77561260 + 2.66667 NA Intergenic Intergenic -68460 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 715 chrX 56248418 56249005 + 2.66667 NA intron (NM_001324099, intron 1 of 3) intron (NM_001324099, intron 1 of 3) 15553 NR_136704 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 378.834 chr13 39684524 39684763 + 2.66667 NA intron (NM_001145079, intron 8 of 18) intron (NM_001145079, intron 8 of 18) -20508 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 884.667 chr12 26017403 26018035 + 2.66667 NA intron (NM_001164747, intron 2 of 5) LTR41|LTR|ERVL -34845 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 594.834 chr10 43129392 43129818 + 2.66667 NA 3' UTR (NM_020975, exon 20 of 20) 3' UTR (NM_020975, exon 20 of 20) -8840 NR_135077 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 1141.33 chr1 27669271 27669841 + 2.66667 NA intron (NM_022873, intron 1 of 4) intron (NM_022873, intron 1 of 4) 2636 NM_022873 2537 Hs.523847 NM_002038 ENSG00000126709 IFI6 6-16|FAM14C|G1P3|IFI-6-16|IFI616 interferon alpha inducible protein 6 protein-coding 689.667-2 chr3 56042308 56042784 + 2.66667 NA intron (NR_132749, intron 7 of 17) intron (NR_132749, intron 7 of 17) -189952 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 488-2 chr17 44919972 44920418 + 2.66667 NA Intergenic Intergenic -4643 NM_001363846 2670 Hs.514227 NM_002055 ENSG00000131095 GFAP ALXDRD glial fibrillary acidic protein protein-coding 1089.33-2 chr7 18345623 18346459 + 2.66667 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 55949 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 252.167-13 chr20 35616357 35616591 + 2.66667 NA intron (NM_003116, intron 1 of 11) intron (NM_003116, intron 1 of 11) 590 NM_001317931 6676 Hs.123159 NM_003116 ENSG00000061656 SPAG4 CT127|SUN4 sperm associated antigen 4 protein-coding 766.167 chrX 79081671 79082327 + 2.66667 NA Intergenic Intergenic -88973 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 677.833-3 chr6 165729456 165729870 + 2.66667 NA Intergenic Intergenic -67383 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 219.167-20 chr8 80091506 80091828 + 2.66667 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) -10836 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 202-23 chr20 51015238 51015357 + 2.66667 NA intron (NM_002237, intron 1 of 2) L2b|LINE|L2 7810 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 626.168 chr1 224767527 224767866 + 2.66667 NA Intergenic Intergenic 151379 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 495.834 chrX 44032393 44032651 + 2.66667 NA Intergenic Intergenic -59132 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 905 chr17 72540462 72541297 + 2.66667 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 51925 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 406.166-2 chr8 132488041 132488294 + 2.66667 NA Intergenic MLT1B|LTR|ERVL-MaLR -7072 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 864.334 chr12 27434142 27435226 + 2.66667 NA intron (NR_109975, intron 1 of 3) intron (NR_109975, intron 1 of 3) 11950 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 315.833-2 chr1 197526169 197526360 + 2.66667 NA intron (NR_125340, intron 17 of 19) intron (NR_125340, intron 17 of 19) 249216 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 872.334 chr3 66253690 66254247 + 2.66667 NA intron (NM_001350992, intron 2 of 8) intron (NM_001350992, intron 2 of 8) 32965 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 686.167 chr11 90249324 90249712 + 2.66667 NA Intergenic Intergenic -1714 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 1245.33-3 chr3 43543553 43544780 + 2.66667 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) 77760 NM_001346467 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 417.333-6 chr3 123028626 123028951 + 2.66667 NA promoter-TSS (NM_001256348) promoter-TSS (NM_001256348) -183 NR_046079 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 1482.34 chr8 84648185 84649361 + 2.66667 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -57154 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 601.666-3 chr3 38999735 39000324 + 2.66667 NA intron (NM_001349253, intron 2 of 29) intron (NM_001349253, intron 2 of 29) -49468 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 440.5-9 chr9 77795734 77796081 + 2.66667 NA intron (NM_002072, intron 4 of 6) intron (NM_002072, intron 4 of 6) -147585 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 380-11 chr2 222842727 222842936 + 2.66667 NA Intergenic Intergenic -18205 NM_203372 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 623.167 chr1 225480744 225481138 + 2.66667 NA Intergenic LTR53|LTR|ERVL -52086 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 401.333-7 chr6 28332468 28332685 + 2.66667 NA intron (NM_001243242, intron 1 of 3) MIR|SINE|MIR 3558 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 934.666 chr16 2155010 2155778 + 2.66667 NA promoter-TSS (NR_132114) promoter-TSS (NR_132114) -36 NR_132114 100507303 Hs.369728 NR_132114 ENSG00000260260 SNHG19 SNORD60HG small nucleolar RNA host gene 19 ncRNA 1420 chr4 109432578 109433837 + 2.66667 NA promoter-TSS (NM_001318085) promoter-TSS (NM_001318085) -508 NM_001042734 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 272.667-10 chr12 26614375 26614580 + 2.66667 NA intron (NM_002223, intron 26 of 56) intron (NM_002223, intron 26 of 56) 218717 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 813.334-2 chr2 10124483 10125174 + 2.66667 NA exon (NM_001165931, exon 5 of 10) exon (NM_001165931, exon 5 of 10) 2089 NM_001034 6241 Hs.226390 NM_001034 ENSG00000171848 RRM2 R2|RR2|RR2M ribonucleotide reductase regulatory subunit M2 protein-coding 264.5-12 chr19 17496366 17496558 + 2.66667 NA intron (NR_147835, intron 1 of 2) intron (NR_147835, intron 1 of 2) -15187 NM_012088 25796 Hs.466165 NM_012088 ENSG00000130313 PGLS 6PGL|HEL-S-304 6-phosphogluconolactonase protein-coding 366.667-6 chr4 118278508 118278875 + 2.66667 NA promoter-TSS (NR_003584) promoter-TSS (NR_003584) -71 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 472.667 chr15 95417895 95418249 + 2.66667 NA Intergenic Intergenic -15021 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 616.667-4 chr6 88982608 88983225 + 2.66667 NA Intergenic Intergenic -19298 NM_003800 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 511.5-2 chr12 15899526 15899797 + 2.66667 NA intron (NM_007178, intron 7 of 9) intron (NM_007178, intron 7 of 9) -11671 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 574.001 chr20 38633774 38634047 + 2.66667 NA intron (NM_001164431, intron 5 of 14) intron (NM_001164431, intron 5 of 14) 32101 NM_001164431 343578 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 803.667 chr12 63068833 63069446 + 2.66667 NA Intergenic Intergenic 83671 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 601.834-2 chr19 13276915 13277792 + 2.66667 NA intron (NM_023035, intron 22 of 46) MER91B|DNA|hAT-Tip100 126942 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 286.334-5 chr2 154102136 154102309 + 2.66667 NA intron (NM_052917, intron 3 of 12) L1PB4|LINE|L1 157828 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 526.501 chr8 129247494 129248144 + 2.66667 NA Intergenic Intergenic -6579 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 387-24 chr9 98035776 98036158 + 2.66667 NA Intergenic AluSg|SINE|Alu -20765 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 547-4 chr21 30257755 30258201 + 2.66667 NA Intergenic Intergenic 24972 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 613.999-2 chr9 23408029 23408564 + 2.66667 NA Intergenic L1MCb|LINE|L1 264103 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 787 chr1 113978168 113978714 + 2.66667 NA promoter-TSS (NM_001286353) promoter-TSS (NM_001286353) -950 NM_001286353 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 611.166 chr19 43766378 43766758 + 2.66667 NA TTS (NM_002250) TTS (NM_002250) -11606 NM_019108 56006 Hs.466875 NM_019108 ENSG00000105771 SMG9 C19orf61|F17127_1|HBMS SMG9 nonsense mediated mRNA decay factor protein-coding 612.834-2 chr8 126868740 126869493 + 2.66667 NA Intergenic MIR|SINE|MIR -144038 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 756-2 chr3 134212704 134213149 + 2.66667 NA intron (NM_001005861, intron 2 of 14) intron (NM_001005861, intron 2 of 14) 37818 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 381-2 chr10 26269905 26270247 + 2.66667 NA intron (NM_000818, intron 9 of 16) intron (NM_000818, intron 9 of 16) 53302 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 720.166 chr2 205763480 205764180 + 2.66667 NA exon (NM_201267, exon 13 of 16) exon (NM_201267, exon 13 of 16) 81329 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 224.667-5 chr1 229710972 229711066 + 2.66667 NA Intergenic L1MEc|LINE|L1 84772 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 439.834-3 chr10 48382815 48383054 + 2.66667 NA intron (NM_001323302, intron 3 of 13) (TA)n|Simple_repeat|Simple_repeat -18678 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 273.833-6 chr19 47048699 47048841 + 2.66667 NA promoter-TSS (NM_017854) promoter-TSS (NM_017854) -146 NM_017854 54958 Hs.105606 NM_017854 ENSG00000130748 TMEM160 - transmembrane protein 160 protein-coding 1180.83 chr9 86486956 86487675 + 2.66667 NA Intergenic Intergenic -132905 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 415.001 chr14 49505397 49505659 + 2.66667 NA Intergenic LTR32|LTR|ERVL 80852 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 601.501 chr2 149883924 149884270 + 2.66667 NA Intergenic Intergenic -24906 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 603.5-2 chr4 100093210 100093917 + 2.66667 NA Intergenic Intergenic -96470 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 608.667-5 chr6 53064457 53065360 + 2.66667 NA promoter-TSS (NM_033480) promoter-TSS (NM_033480) -90 NM_033481 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 396.667 chr14 66909500 66909924 + 2.66667 NA intron (NM_001024218, intron 5 of 21) intron (NM_001024218, intron 5 of 21) -279728 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 530.667 chr10 17223280 17223545 + 2.66667 NA intron (NR_108060, intron 1 of 3) intron (NR_108060, intron 1 of 3) 3486 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 797.666 chr9 85425295 85425781 + 2.66667 NA Intergenic Intergenic 316491 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 431.667-2 chr15 90071230 90071661 + 2.66667 NA intron (NM_198526, intron 2 of 4) intron (NM_198526, intron 2 of 4) 10762 NR_146321 109729181 Hs.655249 NR_146321 ENSG00000259291 ZNF710-AS1 - ZNF710 antisense RNA 1 ncRNA 478.833-7 chr8 130533280 130533704 + 2.66667 NA Intergenic Tigger1|DNA|TcMar-Tigger -89818 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 685.833 chr2 97664022 97664551 + 2.66667 NA promoter-TSS (NM_005735) promoter-TSS (NM_005735) -242 NM_005735 10120 Hs.98791 NM_005735 ENSG00000115073 ACTR1B ARP1B|CTRN2|PC3 actin related protein 1B protein-coding 766.667 chr12 15172370 15172883 + 2.66667 NA intron (NM_032918, intron 2 of 4) L1MB8|LINE|L1 20703 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 316.334-3 chr14 51344014 51344200 + 2.66667 NA intron (NR_038358, intron 1 of 4) intron (NR_038358, intron 1 of 4) 10714 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 531.5-3 chr8 42152699 42153029 + 2.66667 NA promoter-TSS (NM_001134296) promoter-TSS (NM_001134296) -82 NM_001134296 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 414.001-2 chr2 135281900 135282154 + 2.66667 NA intron (NM_001286569, intron 8 of 21) L1MB8|LINE|L1 145399 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 450.334 chr2 40448633 40448964 + 2.66667 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 2886 NM_001351489 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 357.333-8 chr2 226210940 226211169 + 2.66667 NA Intergenic L1MD|LINE|L1 68260 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 556.167 chr1 19659818 19660424 + 2.66667 NA Intergenic AluSc|SINE|Alu -4754 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 559.667-4 chr6 12608151 12608485 + 2.66667 NA Intergenic Intergenic -22914 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 443.001 chr15 70697343 70697750 + 2.66667 NA intron (NM_018003, intron 2 of 18) intron (NM_018003, intron 2 of 18) 4736 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 670.833-2 chr8 10928338 10928894 + 2.66667 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) 88590 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 248.5-2 chr1 27725667 27726018 + 2.66667 NA promoter-TSS (NM_001143912) promoter-TSS (NM_001143912) -119 NM_001143912 199870 Hs.469359 NM_152660 ENSG00000009780 FAM76A - family with sequence similarity 76 member A protein-coding 744.5 chr10 71204779 71205266 + 2.66667 NA Intergenic Intergenic -7548 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 350.334-14 chr9 129824071 129824355 + 2.66667 NA promoter-TSS (NM_000113) promoter-TSS (NM_000113) -77 NM_000113 1861 Hs.534312 NM_000113 ENSG00000136827 TOR1A DQ2|DYT1 torsin family 1 member A protein-coding 543 chr1 196317854 196318233 + 2.66667 NA intron (NR_146058, intron 19 of 29) intron (NR_146058, intron 19 of 29) -229328 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 568.334-2 chr21 31091065 31091447 + 2.66667 NA Intergenic L1MA4|LINE|L1 -52780 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 886.501 chr16 83954204 83954834 + 2.66667 NA intron (NM_182981, intron 1 of 5) intron (NM_182981, intron 1 of 5) 1279 NM_182981 29948 Hs.128055 NM_013370 ENSG00000140961 OSGIN1 BDGI|OKL38 oxidative stress induced growth inhibitor 1 protein-coding 1265.17 chr10 5094311 5095441 + 2.66667 NA intron (NM_003739, intron 1 of 8) intron (NM_003739, intron 1 of 8) 462 NM_003739 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 585.334 chrX 68183676 68183993 + 2.66667 NA intron (NM_002547, intron 15 of 24) MER34B|LTR|ERV1 249661 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 338-6 chr19 30800092 30800361 + 2.66667 NA Intergenic Intergenic -367284 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 1430.5-2 chr7 4797543 4798543 + 2.66667 NA 3' UTR (NM_018059, exon 15 of 15) 3' UTR (NM_018059, exon 15 of 15) -9404 NR_039800 100616465 NR_039800 ENSG00000264474 MIR4656 - microRNA 4656 ncRNA 494.499 chr3 157137579 157138036 + 2.66667 NA Intergenic AluY|SINE|Alu -14805 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 328-5 chr11 75706352 75706551 + 2.66667 NA Intergenic Intergenic -11387 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 941.166 chr4 52982530 52983267 + 2.66667 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 120581 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 517.666 chr7 2451531 2451985 + 2.66667 NA Intergenic Intergenic 24625 NM_001291784 402635 NM_001291784 GRIFIN - galectin-related inter-fiber protein protein-coding 201.667-16 chr17 58093906 58094055 + 2.66667 NA 3' UTR (NM_080677, exon 3 of 3) 3' UTR (NM_080677, exon 3 of 3) 10561 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 594.501-2 chr11 67167969 67168466 + 2.66667 NA intron (NR_027473, intron 2 of 20) intron (NR_027473, intron 2 of 20) 48954 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 723.5 chr15 51775968 51776629 + 2.66667 NA intron (NM_001142885, intron 4 of 8) intron (NM_001142885, intron 4 of 8) 24701 NM_014548 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 341-5 chr17 65836295 65836610 + 2.66667 NA intron (NM_001353129, intron 21 of 26) L1MA4|LINE|L1 -9909 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 248.334-15 chr8 117651115 117651224 + 2.66667 NA Intergenic Intergenic 130456 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 709.166 chr12 108951019 108951533 + 2.66667 NA intron (NM_018711, intron 6 of 15) intron (NM_018711, intron 6 of 15) 69792 NM_018711 55530 Hs.4221 NM_018711 ENSG00000166111 SVOP - SV2 related protein protein-coding 283-20 chr7 41144952 41145117 + 2.66667 NA Intergenic Intergenic 43430 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 646.667 chr1 30779749 30780151 + 2.66667 NA Intergenic MIRb|SINE|MIR -22176 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 600.001-2 chr21 45130446 45130699 + 2.66667 NA intron (NR_027674, intron 2 of 11) intron (NR_027674, intron 2 of 11) -21958 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 359-7 chr14 50429034 50429262 + 2.66667 NA intron (NM_198794, intron 28 of 31) intron (NM_198794, intron 28 of 31) -31850 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 708.333 chr8 39891841 39892655 + 2.66667 NA Intergenic Intergenic -21643 NM_002164 3620 Hs.840 NM_002164 ENSG00000131203 IDO1 IDO|IDO-1|INDO indoleamine 2,3-dioxygenase 1 protein-coding 957.5-3 chr8 81780232 81781008 + 2.66667 NA Intergenic Intergenic 48172 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 781-2 chr3 197942950 197943599 + 2.66667 NA intron (NM_001323030, intron 4 of 7) intron (NM_001323030, intron 4 of 7) 6651 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 799.667-3 chr4 109998728 109999424 + 2.66667 NA intron (NM_001357021, intron 17 of 19) intron (NM_001357021, intron 17 of 19) 86193 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 295.333-19 chr4 115537624 115537813 + 2.66667 NA Intergenic Intergenic -424098 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 528.167 chr17 74296768 74297182 + 2.66667 NA intron (NM_023036, intron 6 of 13) L1M4|LINE|L1 22741 NM_023036 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 464.667-4 chr17 69971718 69972017 + 2.66667 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 10160 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 467.834-3 chr4 92785312 92785535 + 2.66667 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 481024 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 798.334 chr15 78909535 78910203 + 2.66667 NA Intergenic Intergenic 35229 NM_001319137 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 780.334-2 chr3 38662439 38663055 + 2.66667 NA Intergenic L1MA4|LINE|L1 -13060 NM_001354701 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 661.334-2 chr2 22903850 22904310 + 2.66667 NA Intergenic Intergenic 367601 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 998.667 chr22 22847747 22848802 + 2.66667 NA Intergenic Intergenic 25498 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 357.834-6 chr5 27564709 27564986 + 2.66667 NA Intergenic Intergenic 92555 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 755.667-4 chr2 232142010 232142514 + 2.66667 NA intron (NR_046476, intron 8 of 20) intron (NR_046476, intron 8 of 20) -30391 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 268.667-7 chr12 60595445 60595556 + 2.66667 NA Intergenic Intergenic 906130 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 635.167-2 chr11 31305798 31306103 + 2.66667 NA intron (NM_181807, intron 5 of 8) intron (NM_181807, intron 5 of 8) 63789 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 1096.67-2 chr2 42946737 42947309 + 2.66667 NA Intergenic Intergenic 92520 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 782.001 chr17 63082024 63082666 + 2.66667 NA intron (NM_025185, intron 3 of 25) intron (NM_025185, intron 3 of 25) 116110 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 655.834 chr1 202119123 202119564 + 2.66667 NA Intergenic AluJo|SINE|Alu -3574 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2|ETBRLP2 G protein-coupled receptor 37 like 1 protein-coding 672.334 chr2 206799997 206800899 + 2.66667 NA Intergenic Intergenic -17140 NR_036077 100422993 NR_036077 ENSG00000283469 MIR3130-1 MIR3130-3|mir-3130-1 microRNA 3130-1 ncRNA 809.334-3 chr7 5563377 5564006 + 2.66667 NA Intergenic Intergenic -29125 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 613.5 chr9 72676417 72676847 + 2.66667 NA intron (NM_138691, intron 5 of 23) MIRb|SINE|MIR 154831 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 471.5-3 chr2 175111077 175111565 + 2.66667 NA intron (NR_045773, intron 9 of 13) intron (NR_045773, intron 9 of 13) 56388 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 544.667 chr19 49983766 49984027 + 2.66667 NA intron (NM_001308420, intron 12 of 12) intron (NM_001308420, intron 12 of 12) 14232 NM_001348364 400709 Hs.568076 NM_001348364 SIGLEC16 SIGLECP16|Siglec-P16 sialic acid binding Ig like lectin 16 (gene/pseudogene) protein-coding 591.666-4 chr9 75855497 75856228 + 2.66667 NA Intergenic Intergenic -34782 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 497 chr12 12194109 12194497 + 2.66667 NA intron (NM_002336, intron 3 of 22).2 L1ME3B|LINE|L1 72741 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 285.167-2 chr1 186851229 186851348 + 2.66667 NA intron (NM_024420, intron 1 of 17) intron (NM_024420, intron 1 of 17) 22339 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 802.167 chr7 48299545 48300156 + 2.66667 NA intron (NM_152701, intron 23 of 61) intron (NM_152701, intron 23 of 61) 128392 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 897.334-2 chr4 127587143 127587889 + 2.66667 NA Intergenic L1PA15-16|LINE|L1 -45441 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 609-4 chr13 107124371 107124785 + 2.66667 NA Intergenic Intergenic 196385 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 353.333-11 chr3 48757147 48757351 + 2.66667 NA intron (NM_001321982, intron 8 of 11) intron (NM_001321982, intron 8 of 11) -39971 NM_001190316 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|InsP6K2|PIUS inositol hexakisphosphate kinase 2 protein-coding 270-44 chr9 21392484 21392686 + 2.66667 NA Intergenic Intergenic -7187 NM_000605 3440 Hs.211575 NM_000605 ENSG00000188379 IFNA2 IFN-alphaA|IFNA|IFNA2B|INFA2 interferon alpha 2 protein-coding 669.501 chr7 51367001 51367690 + 2.66667 NA Intergenic Intergenic 25911 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 537.667-5 chr2 41698783 41699401 + 2.66667 NA Intergenic Intergenic -178463 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 527.5 chr14 48853839 48854263 + 2.66667 NA Intergenic L1MD2|LINE|L1 732329 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 343.334-3 chr2 22075395 22075606 + 2.66667 NA Intergenic L1ME2|LINE|L1 -364848 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 797.167-3 chr8 15238131 15238648 + 2.66667 NA promoter-TSS (NM_001322881) promoter-TSS (NM_001322881) 42 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 688.5 chr1 190453242 190453799 + 2.66667 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 22490 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 797-2 chr18 32549178 32549705 + 2.66667 NA Intergenic Intergenic 37778 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 553.5-2 chr5 177456520 177457033 + 2.66667 NA TTS (NM_001174102) TTS (NM_001174102) 5650 NM_001364152 1627 Hs.130316 NM_004395 ENSG00000113758 DBN1 D0S117E drebrin 1 protein-coding 599.5 chr11 107553522 107553933 + 2.66667 NA intron (NM_138775, intron 4 of 11) intron (NM_138775, intron 4 of 11) 12008 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 436.834 chr8 135854813 135855024 + 2.66667 NA Intergenic Intergenic 397462 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 346.334-3 chr4 86934698 86934919 + 2.66667 NA promoter-TSS (NM_001166693) promoter-TSS (NM_001166693) 42 NR_038841 100506746 Hs.657766 NR_038841 AFF1-AS1 - AFF1 antisense RNA 1 ncRNA 1329.67 chr2 64831440 64832418 + 2.66667 NA Intergenic Intergenic 31702 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 474.334-3 chr11 74417083 74417408 + 2.66667 NA Intergenic AluJr|SINE|Alu 18008 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 827.834-2 chr9 5425218 5425622 + 2.66667 NA intron (NM_018465, intron 3 of 5) intron (NM_018465, intron 3 of 5) 12505 NM_018465 55848 Hs.584242 NM_018465 ENSG00000107020 PLGRKT AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT) plasminogen receptor with a C-terminal lysine protein-coding 343.667-14 chr3 186570392 186570922 + 2.66667 NA promoter-TSS (NM_016306) promoter-TSS (NM_016306) -19 NM_016306 51726 Hs.317192 NM_016306 ENSG00000090520 DNAJB11 ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PKD6|PRO1080|UNQ537 DnaJ heat shock protein family (Hsp40) member B11 protein-coding 844.001 chr8 108889913 108890848 + 2.66667 NA Intergenic Intergenic -102786 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 241-9 chr18 79246652 79246781 + 2.66667 NA intron (NR_148360, intron 11 of 31) intron (NR_148360, intron 11 of 31) -149214 NM_001278669 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 401.5-5 chr4 55409465 55409952 + 2.66667 NA intron (NR_073070, intron 2 of 6) MER20|DNA|hAT-Charlie 13751 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 326.833-5 chr11 62909062 62909379 + 2.66667 NA 3' UTR (NM_000738, exon 2 of 2) 3' UTR (NM_000738, exon 2 of 2) 12143 NM_000738 1128 Hs.632119 NM_000738 ENSG00000168539 CHRM1 HM1|M1|M1R cholinergic receptor muscarinic 1 protein-coding 785.999 chr10 105950055 105950763 + 2.66667 NA Intergenic Intergenic -130076 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 346-7 chr3 47545563 47545746 + 2.66667 NA Intergenic MER3|DNA|hAT-Charlie -31942 NM_001031703 54859 Hs.311100 NM_017713 ENSG00000163832 ELP6 C3orf75|TMEM103 elongator acetyltransferase complex subunit 6 protein-coding 585.834 chr12 113030718 113031386 + 2.66667 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -26805 NM_004416 1840 Hs.372152 NM_004416 ENSG00000135144 DTX1 RNF140|hDx-1 deltex E3 ubiquitin ligase 1 protein-coding 915.334-2 chr7 23055458 23056669 + 2.66667 NA Intergenic Intergenic -41933 NM_032581 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 409-4 chr2 102519726 102520211 + 2.66667 NA intron (NM_001011552, intron 9 of 11) intron (NM_001011552, intron 9 of 11) 46742 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 575.834 chr15 59690714 59691491 + 2.66667 NA Intergenic Intergenic -1782 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 824 chr1 33367577 33368386 + 2.66667 NA intron (NM_001330488, intron 4 of 12) intron (NM_001330488, intron 4 of 12) 7612 NM_001330488 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 1554-2 chr2 105919355 105920296 + 2.66667 NA Intergenic Intergenic 67978 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 778-3 chr3 68972366 68972991 + 2.66667 NA Intergenic Intergenic -40068 NM_001005527 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 350.167-13 chr8 134892651 134892875 + 2.66667 NA Intergenic L1MB7|LINE|L1 42828 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 288.834-5 chr3 44332577 44332719 + 2.66667 NA TTS (NM_001145030) TTS (NM_001145030) -5471 NM_001029840 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 915-2 chr5 79858081 79858919 + 2.66667 NA Intergenic Intergenic -78079 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 456.334 chr14 52530095 52530352 + 2.66667 NA intron (NM_020784, intron 6 of 20) (TA)n|Simple_repeat|Simple_repeat 22282 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 490.334-3 chr4 33489911 33490222 + 2.66667 NA Intergenic Intergenic 549827 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 659.334-2 chr5 36690023 36690842 + 2.66667 NA Intergenic CpG 83826 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 576.834 chr17 4304555 4304948 + 2.66667 NA intron (NM_003342, intron 2 of 5) intron (NM_003342, intron 2 of 5) -32857 NR_110982 103021295 Hs.741319 NR_110982 LOC103021295 - uncharacterized LOC103021295 ncRNA 469.334 chr1 166391953 166392259 + 2.66667 NA Intergenic L2a|LINE|L2 97933 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 344.5-4 chr10 110557002 110557452 + 2.66667 NA Intergenic MLT1E|LTR|ERVL-MaLR -10464 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 838.833 chr3 197223752 197224408 + 2.66667 NA intron (NM_001366216, intron 4 of 23) intron (NM_001366216, intron 4 of 23) -39949 NM_001204387 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 630.168 chr20 22851668 22852156 + 2.66667 NA Intergenic L1MA9|LINE|L1 -166568 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 377.167-10 chrX 82493166 82493334 + 2.66667 NA Intergenic L1M4|LINE|L1 -1015040 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 583.833 chr1 26233501 26234441 + 2.66667 NA promoter-TSS (NM_001281517) promoter-TSS (NM_001281517) -229 NM_022778 64793 Hs.63795 NM_022778 ENSG00000130695 CEP85 CCDC21 centrosomal protein 85 protein-coding 427.834-2 chr15 66838632 66838910 + 2.66667 NA Intergenic Intergenic 117744 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 285.001 chr2 222330193 222330351 + 2.66667 NA intron (NR_136642, intron 1 of 3) intron (NR_136642, intron 1 of 3) 9611 NR_136641 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 938.501 chr2 96960121 96960966 + 2.66667 NA intron (NM_001122646, intron 5 of 16) intron (NM_001122646, intron 5 of 16) 26037 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 554.333 chr21 45136789 45137288 + 2.66667 NA intron (NR_027673, intron 3 of 12) intron (NR_027673, intron 3 of 12) -15492 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 772.001 chr5 56269542 56270134 + 2.66667 NA Intergenic Intergenic -36508 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 577.667-3 chrX 12770564 12770885 + 2.66667 NA Intergenic Intergenic -20631 NM_002765 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 237.667-8 chr14 88330213 88330419 + 2.66667 NA Intergenic Intergenic -3404 NM_021161 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 350-9 chr14 61463710 61464003 + 2.66667 NA intron (NM_006255, intron 9 of 13) L1MA8|LINE|L1 106338 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 558.334 chr5 137344509 137344881 + 2.66667 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 154631 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 471.5-6 chr5 97296819 97297477 + 2.66667 NA Intergenic L1MA3|LINE|L1 -113901 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 174-26 chr2 41869858 41869932 + 2.66667 NA Intergenic Intergenic -7660 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 1394 chr19 50922003 50922888 + 2.66667 NA Intergenic Intergenic -11707 NR_126566 9622 Hs.218366 NM_004917 ENSG00000167749 KLK4 AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein kallikrein related peptidase 4 protein-coding 310-31 chr9 131668724 131669000 + 2.66667 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 40980 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 569.834 chr10 95132737 95133179 + 2.66667 NA Intergenic HUERS-P3-int|LTR|ERV1 -61242 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 723.334-2 chr15 99249142 99249741 + 2.66667 NA non-coding (NR_109947, exon 1 of 13) non-coding (NR_109947, exon 1 of 13) 140 NR_109947 64927 Hs.513195 NM_022905 ENSG00000103852 TTC23 HCC-8 tetratricopeptide repeat domain 23 protein-coding 421.167-3 chr10 30854274 30854466 + 2.66667 NA intron (NM_001143766, intron 6 of 7) L2a|LINE|L2 131151 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 608.667-2 chr2 228657946 228658424 + 2.66667 NA Intergenic Intergenic -46790 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 790.001 chr19 17469493 17470308 + 2.66667 NA promoter-TSS (NM_198580) promoter-TSS (NM_198580) -624 NM_198580 376497 Hs.363138 NM_198580 ENSG00000130304 SLC27A1 ACSVL5|FATP|FATP-1|FATP1 solute carrier family 27 member 1 protein-coding 641.832 chr8 126261159 126261650 + 2.66667 NA Intergenic Intergenic -64091 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 369.667-3 chr1 244205833 244206058 + 2.66667 NA Intergenic Intergenic -146690 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 569.999 chr6 65090158 65090577 + 2.66667 NA intron (NM_001292009, intron 12 of 43) THE1D|LTR|ERVL-MaLR -211051 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 1405.33 chr3 107690134 107691391 + 2.66667 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 167800 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 385-4 chr19 46070397 46070632 + 2.66667 NA intron (NR_163177, intron 1 of 5) intron (NR_163177, intron 1 of 5) 7115 NR_163175 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 523.667-2 chr1 200022173 200022389 + 2.66667 NA Intergenic Intergenic -5429 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 407-4 chr4 91838161 91838436 + 2.66667 NA Intergenic Intergenic 439004 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 440.334 chr10 85995930 85996253 + 2.66667 NA intron (NM_017551, intron 4 of 15) L1MEf|LINE|L1 268697 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 714.333-3 chr4 174120419 174120977 + 2.66667 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 99700 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 579.834 chr12 12985494 12986388 + 2.66667 NA intron (NR_149067, intron 2 of 2) intron (NR_149067, intron 2 of 2) 6104 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 372.167 chr16 23724184 23724537 + 2.66667 NA Intergenic L1M5|LINE|L1 -11138 NM_001308220 10595 Hs.592041 NM_033266 ENSG00000134398 ERN2 IRE1-BETA|IRE1b|IRE2p|hIRE2p endoplasmic reticulum to nucleus signaling 2 protein-coding 612.334 chr12 41264058 41264830 + 2.66667 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 76124 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 716.167-2 chr1 211134267 211134767 + 2.66667 NA promoter-TSS (NM_172362) promoter-TSS (NM_172362) -369 NM_172362 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 337.667-13 chr2 88330327 88330623 + 2.66667 NA Intergenic Intergenic 122218 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 226-30 chr22 20421033 20421119 + 2.66667 NA Intergenic Intergenic 16749 NM_153334 91179 Hs.474251 NM_153334 ENSG00000244486 SCARF2 NSR1|SREC-II|SREC2|SRECRP-1|VDEGS scavenger receptor class F member 2 protein-coding 484.166-3 chr16 58336308 58336866 + 2.66667 NA Intergenic Intergenic -41540 NM_001080492 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 566.167-3 chr7 18352265 18352851 + 2.66667 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 62466 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 444.834 chr3 56340131 56340459 + 2.66667 NA intron (NR_132749, intron 2 of 17) intron (NR_132749, intron 2 of 17) 128172 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 337.167-7 chr15 71730534 71730808 + 2.66667 NA intron (NM_001286429, intron 3 of 11) intron (NM_001286429, intron 3 of 11) -39132 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 988.5 chr2 157327152 157327927 + 2.66667 NA promoter-TSS (NM_001304345) promoter-TSS (NM_001304345) 173 NM_001009959 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 760.333 chr5 35617426 35618025 + 2.66667 NA promoter-TSS (NM_024867) promoter-TSS (NM_024867) -138 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 345.167-4 chr12 50215164 50215300 + 2.66667 NA intron (NM_016357, intron 4 of 10) intron (NM_016357, intron 4 of 10) 7426 NM_001113547 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 801.834-2 chr3 150787575 150788296 + 2.66667 NA Intergenic Intergenic -24766 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 706.334-2 chr6 122372813 122373227 + 2.66667 NA Intergenic Intergenic -26531 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 227.333-26 chr4 173025277 173025540 + 2.66667 NA intron (NM_001034845, intron 12 of 12) intron (NM_001034845, intron 12 of 12) -143403 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 414.334-5 chr2 173894011 173894308 + 2.66667 NA Intergenic Intergenic 69721 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 583.667-6 chr3 111691460 111691908 + 2.66667 NA intron (NM_001185106, intron 1 of 4) intron (NM_001185106, intron 1 of 4) -14251 NR_046733 100874115 Hs.626740 NR_046733 PLCXD2-AS1 - PLCXD2 antisense RNA 1 ncRNA 1106.5-6 chr6 52415748 52416673 + 2.66667 NA Intergenic L2a|LINE|L2 -4132 NM_018100 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 680.5-2 chr5 111278775 111279256 + 2.66667 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 54631 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 169-27 chr19 35067253 35067341 + 2.66667 NA TTS (NM_182983) TTS (NM_182983) 26791 NM_182983 3249 Hs.182385 NM_002151 ENSG00000105707 HPN TMPRSS1 hepsin protein-coding 657.334 chr17 57243238 57243858 + 2.66667 NA Intergenic Intergenic -12303 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 609.5-2 chr12 54404559 54405005 + 2.66667 NA exon (NM_002205, exon 13 of 30) exon (NM_002205, exon 13 of 30) -13484 NM_001130967 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 406.001 chr14 41749808 41750008 + 2.66667 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 143052 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 599.167 chr14 66581177 66581594 + 2.66667 NA intron (NM_001024218, intron 1 of 21) L1MA8|LINE|L1 73978 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 631.333 chr17 47895607 47896571 + 2.66667 NA promoter-TSS (NM_003110) promoter-TSS (NM_003110) -147 NM_003110 6668 Hs.514276 NM_003110 ENSG00000167182 SP2 - Sp2 transcription factor protein-coding 421.001-2 chr3 88927515 88927741 + 2.66667 NA Intergenic Intergenic -179993 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 277-16 chr2 113733515 113733775 + 2.66667 NA intron (NM_001330315, intron 9 of 16) intron (NM_001330315, intron 9 of 16) -12277 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 467.667-4 chr3 53938585 53938887 + 2.66667 NA Intergenic Intergenic -46877 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 443.999 chr2 43694909 43695240 + 2.66667 NA intron (NM_172069, intron 5 of 29) intron (NM_172069, intron 5 of 29) -18645 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 549.999 chr2 3728030 3728481 + 2.66667 NA intron (NM_001365580, intron 3 of 9) intron (NM_001365580, intron 3 of 9) 21413 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 448.167-5 chr3 191416907 191417242 + 2.66667 NA Intergenic AluSq2|SINE|Alu -8450 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 460.334 chr10 4381400 4381731 + 2.66667 NA Intergenic Intergenic -2681 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 892.666 chr12 118979709 118980327 + 2.66667 NA Intergenic Intergenic -1523 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 832.499 chr7 135558429 135558918 + 2.66667 NA intron (NM_015135, intron 1 of 42) MER20B|DNA|hAT-Charlie 756 NM_001329434 23165 Hs.743250 NM_015135 ENSG00000155561 NUP205 C7orf14|NPHS13 nucleoporin 205 protein-coding 667.667-2 chr19 28466058 28466558 + 2.66667 NA intron (NR_110759, intron 6 of 9) intron (NR_110759, intron 6 of 9) -140380 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 387.333-2 chr14 75372922 75373277 + 2.66667 NA Intergenic Intergenic -54625 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 1305.17 chr21 27693422 27694673 + 2.66667 NA Intergenic Intergenic -28332 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 244-25 chr4 110514459 110514565 + 2.66667 NA intron (NM_001977, intron 7 of 19) intron (NM_001977, intron 7 of 19) 38357 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 459.167 chr1 159197767 159198246 + 2.66667 NA non-coding (NR_037870, exon 4 of 4) non-coding (NR_037870, exon 4 of 4) 4416 NR_037870 100131825 Hs.701271 NR_037870 CADM3-AS1 - CADM3 antisense RNA 1 ncRNA 508.666-3 chr14 45208755 45209006 + 2.66667 NA intron (NM_018353, intron 14 of 16) L2-3_Crp|LINE|L2 44322 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 804.333 chr4 94595766 94596551 + 2.66667 NA intron (NM_006457, intron 7 of 12) intron (NM_006457, intron 7 of 12) 144216 NM_001256429 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 605.667-3 chr2 218648643 218649103 + 2.66667 NA exon (NM_001366291, exon 5 of 9) exon (NM_001366291, exon 5 of 9) 10750 NM_001367342 7701 Hs.657969 NM_001105537 ENSG00000115568 ZNF142 HA4654|NEDISHM|pHZ-49 zinc finger protein 142 protein-coding 383.667-7 chr20 56000558 56000757 + 2.66667 NA intron (NM_080617, intron 2 of 2) intron (NM_080617, intron 2 of 2) 4862 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 628 chr1 111755501 111755975 + 2.66667 NA promoter-TSS (NM_198926) promoter-TSS (NM_198926) 59 NM_198926 55924 Hs.193406 NM_019099 ENSG00000197852 INKA2 C1orf183|FAM212B inka box actin regulator 2 protein-coding 408.834-3 chr5 88325624 88325956 + 2.66667 NA intron (NR_105019, intron 6 of 7) Tigger12c|DNA|TcMar-Tigger 56774 NR_039994 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 638.167-2 chr6 149746098 149746819 + 2.66667 NA promoter-TSS (NR_104456) promoter-TSS (NR_104456) 71 NM_198887 348995 Hs.510375 NM_024647 ENSG00000120253 NUP43 bA350J20.1|p42 nucleoporin 43 protein-coding 462.667-3 chr8 82306174 82306504 + 2.66667 NA Intergenic Intergenic -464053 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 340-14 chr6 66899154 66899360 + 2.66667 NA Intergenic Intergenic 1111378 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 519.167-4 chr2 84631199 84631519 + 2.66667 NA intron (NM_001370, intron 29 of 76) MER90|LTR|ERV1 114904 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 1228.5 chr3 79520778 79521438 + 2.66667 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 13221 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 802.834-2 chr6 36680353 36681054 + 2.66667 NA intron (NM_001220778, intron 1 of 2) intron (NM_001220778, intron 1 of 2) 1989 NM_000389 1026 Hs.370771 NM_000389 ENSG00000124762 CDKN1A CAP20|CDKN1|CIP1|MDA-6|P21|SDI1|WAF1|p21CIP1 cyclin dependent kinase inhibitor 1A protein-coding 651.667-2 chr6 106997584 106998317 + 2.66667 NA Intergenic Intergenic -21095 NM_001291738 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 1709.84 chr6 79777780 79779366 + 2.66667 NA Intergenic Intergenic 33673 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 340.334-8 chr6 134017452 134017658 + 2.66667 NA intron (NM_145176, intron 2 of 4) intron (NM_145176, intron 2 of 4) 35069 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 275.834-4 chr3 87991939 87992099 + 2.66667 NA 3' UTR (NM_001322208, exon 3 of 3) 3' UTR (NM_001322208, exon 3 of 3) 9443 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 594.501 chr1 70965775 70966387 + 2.66667 NA intron (NM_198716, intron 2 of 3) intron (NM_198716, intron 2 of 3) -80425 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 353.334-10 chr7 86470672 86470820 + 2.66667 NA Intergenic Intergenic -173163 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 801.667-2 chr18 47749021 47749632 + 2.66667 NA Intergenic Intergenic 181333 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 670.499-2 chr10 110746284 110746849 + 2.66667 NA intron (NM_001134363, intron 1 of 13) intron (NM_001134363, intron 1 of 13) 102230 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 801.5 chr9 121992636 121993254 + 2.66667 NA intron (NM_194252, intron 3 of 3) L1MB3|LINE|L1 100661 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 523.167-6 chr5 179559096 179559740 + 2.66667 NA promoter-TSS (NM_001040451) promoter-TSS (NM_001040451) -313 NM_001040451 80230 Hs.306769 NM_025158 ENSG00000176783 RUFY1 RABIP4|ZFYVE12 RUN and FYVE domain containing 1 protein-coding 511.5-6 chr5 151825276 151825591 + 2.66667 NA intron (NM_001146040, intron 8 of 8) intron (NM_001146040, intron 8 of 8) -53257 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 585.5 chr5 49599471 49600074 + 2.66667 NA Intergenic BSR/Beta|Satellite|Satellite 841516 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 270-9 chr12 15137562 15137788 + 2.66667 NA intron (NM_032918, intron 2 of 4) L1MC1|LINE|L1 -14248 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 553.001-2 chrX 133004969 133005239 + 2.66667 NA Intergenic Intergenic 23168 NM_031907 83844 Hs.333137 NM_031907 ENSG00000134588 USP26 - ubiquitin specific peptidase 26 protein-coding 638.334 chr3 111719080 111719502 + 2.66667 NA intron (NM_153268, intron 3 of 3) L1ME2z|LINE|L1 -13205 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 467.834 chr14 37985999 37986300 + 2.66667 NA Intergenic Intergenic -84025 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 479.167-3 chr6 150395649 150396026 + 2.66667 NA intron (NR_134655, intron 5 of 5) intron (NR_134655, intron 5 of 5) 26825 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 281.167-5 chr11 46920008 46920238 + 2.66667 NA Intergenic Intergenic -1573 NM_002334 4038 Hs.4930 NM_002334 ENSG00000134569 LRP4 CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2 LDL receptor related protein 4 protein-coding 405-9 chr2 128063626 128063873 + 2.66667 NA Intergenic LTR86C|LTR|ERVL -27451 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 618.667-2 chr9 70639952 70640783 + 2.66667 NA intron (NM_001366143, intron 10 of 25) intron (NM_001366143, intron 10 of 25) 169717 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 473.5 chr17 56126377 56126745 + 2.66667 NA Intergenic Intergenic -26914 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 281-6 chr12 3041327 3041793 + 2.66667 NA TTS (NM_003213) TTS (NM_003213) -35795 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 171-54 chr7 144027271 144027657 + 2.66667 NA Intergenic Intergenic -22938 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 289.834 chr1 84144127 84144339 + 2.66667 NA promoter-TSS (NM_182948) promoter-TSS (NM_182948) -38 NM_001300916 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 176.333-32 chr7 140647114 140647279 + 2.66667 NA Intergenic Intergenic -5736 NM_001318053 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 1061.5-2 chr3 107676646 107677678 + 2.66667 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 154200 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 553.667-4 chr9 4604516 4605000 + 2.66667 NA intron (NR_148446, intron 7 of 8) intron (NR_148446, intron 7 of 8) 57465 NR_148448 55064 Hs.179615 NM_017985 ENSG00000106686 SPATA6L C9orf68|bA6J24.2 spermatogenesis associated 6 like protein-coding 334-4 chr15 93082240 93082521 + 2.66667 NA intron (NM_020211, intron 1 of 3) intron (NM_020211, intron 1 of 3) 6143 NM_001166287 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 632.833-2 chr12 54207595 54208374 + 2.66667 NA Intergenic Intergenic -18990 NM_001351262 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 300.5-9 chr14 78848078 78848463 + 2.66667 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -351712 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 924.167 chr2 164061138 164061746 + 2.66667 NA Intergenic Intergenic -325434 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 542.167 chr10 63133097 63133697 + 2.66667 NA promoter-TSS (NM_030759) promoter-TSS (NM_030759) 69 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 522.667 chr2 78405068 78405289 + 2.66667 NA Intergenic Intergenic -114447 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 326.334-9 chr7 37789337 37789515 + 2.66667 NA Intergenic SATR2|Satellite|Satellite -59171 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 483.334-3 chr7 7115656 7115912 + 2.66667 NA Intergenic Intergenic -18998 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 450.667-4 chr4 75606588 75606925 + 2.66667 NA intron (NM_003948, intron 4 of 11) Tigger15a|DNA|TcMar-Tigger 23772 NM_003948 8999 Hs.591698 NM_003948 ENSG00000138769 CDKL2 KKIAMRE|P56 cyclin dependent kinase like 2 protein-coding 164-16 chr12 110043095 110043395 + 2.66667 NA intron (NM_207435, intron 4 of 4) L2a|LINE|L2 5402 NR_148517 400073 Hs.44817 NM_207435 ENSG00000174456 C12orf76 - chromosome 12 open reading frame 76 protein-coding 741.333 chr12 104381970 104382621 + 2.66667 NA Intergenic Intergenic -74653 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 716.5-2 chr15 69465885 69466356 + 2.66667 NA Intergenic Intergenic 13302 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 301.834-4 chr14 40681551 40681763 + 2.66667 NA Intergenic L1PB3|LINE|L1 -273054 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 627.834-2 chr10 70461181 70461619 + 2.66667 NA Intergenic L2b|LINE|L2 -13452 NM_001329906 4838 Hs.370414 NM_018055 ENSG00000156574 NODAL HTX5 nodal growth differentiation factor protein-coding 524.333-2 chr11 75802927 75803482 + 2.66667 NA Intergenic Intergenic 11593 NR_144531 100506113 Hs.720913 NR_144531 ENSG00000255507 UVRAG-DT - UVRAG divergent transcript ncRNA 583.333-4 chr6 56357770 56358134 + 2.66667 NA intron (NM_001318752, intron 1 of 28) Kanga1|DNA|TcMar-Tc2 36176 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 910-2 chr7 36440695 36441442 + 2.66667 NA intron (NM_001284302, intron 20 of 22) intron (NM_001284302, intron 20 of 22) -50711 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 427.167-6 chr19 50537724 50538236 + 2.66667 NA intron (NM_001080457, intron 2 of 2) intron (NM_001080457, intron 2 of 2) 13062 NM_001348568 94030 Hs.120873 NM_001080457 ENSG00000131409 LRRC4B HSM|LRIG4|NGL-3 leucine rich repeat containing 4B protein-coding 915.333 chr1 163358928 163359553 + 2.66667 NA Intergenic Intergenic 37286 NM_145697 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 681.834 chr15 74781568 74781969 + 2.66667 NA promoter-TSS (NM_001127190) promoter-TSS (NM_001127190) -312 NM_001127190 1445 Hs.77793 NM_004383 ENSG00000103653 CSK - C-terminal Src kinase protein-coding 624.334-2 chr17 57783433 57783754 + 2.66667 NA Intergenic Intergenic -38294 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 255.5-26 chr4 15479132 15479380 + 2.66667 NA exon (NM_020785, exon 5 of 7) exon (NM_020785, exon 5 of 7) 9374 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 238.667-19 chr5 81703590 81703706 + 2.66667 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 47605 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 1053.83-2 chr12 121773123 121773948 + 2.66667 NA intron (NM_001080825, intron 9 of 11) intron (NM_001080825, intron 9 of 11) 20153 NM_019034 54509 Hs.707579 NM_019034 ENSG00000139725 RHOF ARHF|RIF ras homolog family member F, filopodia associated protein-coding 668.001-2 chr1 239952950 239953405 + 2.66667 NA Intergenic Intergenic -53305 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 639.667-3 chr4 70447200 70447661 + 2.66667 NA intron (NM_001145006, intron 1 of 3) intron (NM_001145006, intron 1 of 3) 16938 NM_001145006 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 801.168 chr12 6423447 6423983 + 2.66667 NA Intergenic Intergenic -21170 NM_001242 939 Hs.355307 NM_001242 ENSG00000139193 CD27 S152|S152. LPFS2|T14|TNFRSF7|Tp55 CD27 molecule protein-coding 505.667-3 chr3 16290252 16290453 + 2.66667 NA intron (NM_001330670, intron 5 of 8) intron (NM_001330670, intron 5 of 8) 25140 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 561.667-2 chr13 99656249 99656705 + 2.66667 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 13418 NR_036191 100422861 NR_036191 ENSG00000263615 MIR4306 mir-4306 microRNA 4306 ncRNA 949.667 chr10 102169349 102169952 + 2.66667 NA Intergenic Intergenic 17261 NM_004741 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 501.334-3 chr8 81909268 81909542 + 2.66667 NA Intergenic L2c|LINE|L2 -67119 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 553.001 chr4 36213955 36214324 + 2.66667 NA intron (NR_146894, intron 3 of 32) intron (NR_146894, intron 3 of 32) 29800 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 297.333-23 chr9 68685871 68686019 + 2.66667 NA Intergenic Intergenic -19295 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 377.334-3 chr4 31919927 31920188 + 2.66667 NA Intergenic L1ME4a|LINE|L1 -77322 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 439-4 chr3 99842976 99843476 + 2.66667 NA intron (NM_001282794, intron 2 of 2) intron (NM_001282794, intron 2 of 2) -19361 NR_110821 101929357 Hs.741615 NR_110821 HP09053 - uncharacterized LOC101929357 ncRNA 493-2 chr3 146589886 146590350 + 2.66667 NA intron (NM_001085420, intron 5 of 7) intron (NM_001085420, intron 5 of 7) 16098 NM_001321245 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 629.833-5 chr3 155352679 155353072 + 2.66667 NA Intergenic Intergenic -59192 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 713.499-2 chr9 128438415 128439067 + 2.66667 NA intron (NR_031672, intron 2 of 2).4 intron (NR_031672, intron 2 of 2).4 -16414 NM_153436 4957 Hs.129055 NM_002540 ENSG00000136811 ODF2 CT134|ODF2/1|ODF2/2|ODF84 outer dense fiber of sperm tails 2 protein-coding 403.166-2 chr4 69991873 69992154 + 2.66667 NA Intergenic Intergenic -3953 NM_001009181 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 708.833-3 chr8 143311350 143312006 + 2.66667 NA intron (NM_052963, intron 12 of 13) AluSg|SINE|Alu 20261 NM_030895 79943 Hs.512740 NM_030895 ENSG00000185730 ZNF696 - zinc finger protein 696 protein-coding 298.667-24 chrX 96015371 96015497 + 2.66667 NA Intergenic LTR85c|LTR|Gypsy? 322468 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 617.167 chr10 58744140 58744600 + 2.66667 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 29355 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 876.834 chr21 21003319 21003977 + 2.66667 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 5239 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 328-9 chr20 50652878 50653264 + 2.66667 NA intron (NR_111906, intron 2 of 2) L1MB7|LINE|L1 7600 NR_111906 100506175 Hs.658270 NR_111906 ENSG00000234693 LOC100506175 - uncharacterized LOC100506175 ncRNA 1189.17 chr10 59625207 59626450 + 2.66667 NA Intergenic Intergenic 84063 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 468.501 chr10 5281354 5281586 + 2.66667 NA Intergenic Intergenic -10234 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 863.667 chr11 84390036 84390848 + 2.66667 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -73103 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 504-5 chr8 82716430 82717077 + 2.66667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -195351 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 485.167-7 chrX 106415248 106415451 + 2.66667 NA Intergenic Intergenic -196581 NM_001184782 55086 Hs.274267 NM_018015 ENSG00000147231 RADX CXorf57 RPA1 related single stranded DNA binding protein, X-linked protein-coding 702.833 chr5 72269157 72269768 + 2.66667 NA intron (NM_001286748, intron 4 of 11) intron (NM_001286748, intron 4 of 11) 50778 NM_015084 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 749.834 chr2 28821221 28821832 + 2.66667 NA intron (NM_001008779, intron 2 of 4) intron (NM_001008779, intron 2 of 4) 5529 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 386-2 chr16 53022358 53022669 + 2.66667 NA Intergenic Intergenic 30360 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 662.833-3 chr7 33886212 33886922 + 2.66667 NA Intergenic Intergenic -18348 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 688.001 chr17 40168276 40169094 + 2.66667 NA intron (NM_007359, intron 11 of 13) AluSq|SINE|Alu 6752 NR_106926 102466986 NR_106926 ENSG00000284144 MIR6866 hsa-mir-6866 microRNA 6866 ncRNA 361.332 chr5 97417524 97417789 + 2.66667 NA Intergenic MIRb|SINE|MIR -87040 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 663.334 chr19 33998754 33999227 + 2.66667 NA Intergenic Intergenic -173514 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 1016.83-2 chr15 92096898 92097805 + 2.66667 NA intron (NR_135775, intron 3 of 10) intron (NR_135775, intron 3 of 10) 243047 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 299.333-7 chr13 50289945 50290191 + 2.66667 NA intron (NR_109974, intron 2 of 6) MLT2C1|LTR|ERVL 118050 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 585.167-2 chr2 54773643 54774049 + 2.66667 NA intron (NM_001039753, intron 1 of 40) MIRb|SINE|MIR 48834 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 700.167-2 chr10 14196699 14197322 + 2.66667 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 122726 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 541.668 chr14 60520571 60520898 + 2.66667 NA Intergenic Intergenic 11588 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 434.501-2 chr12 5088861 5089213 + 2.66667 NA Intergenic Intergenic 45158 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 742.333 chr3 152474186 152474819 + 2.66667 NA Intergenic Intergenic -133512 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 478.334 chr10 125733919 125734144 + 2.66667 NA intron (NR_110859, intron 11 of 25) intron (NR_110859, intron 11 of 25) 14322 NR_110859 26098 Hs.468688 NM_015608 ENSG00000107938 EDRF1 C10orf137 erythroid differentiation regulatory factor 1 protein-coding 973.501 chr2 154375494 154376625 + 2.66667 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 81379 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 363-2 chr10 98467357 98467685 + 2.66667 NA intron (NM_001166246, intron 11 of 12) GA-rich|Low_complexity|Low_complexity -20558 NM_001311345 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 440-7 chr2 185219478 185219820 + 2.66667 NA Intergenic L1ME1|LINE|L1 -52577 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 992.334 chr2 1545924 1546735 + 2.66667 NA Intergenic Intergenic 131921 NM_175722 7173 Hs.467554 NM_000547 ENSG00000115705 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 295.667-20 chr8 50056515 50056686 + 2.66667 NA intron (NR_135798, intron 1 of 15) MIR|SINE|MIR -107531 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 409.667-2 chr12 122064013 122064285 + 2.66667 NA intron (NR_135044, intron 1 of 3) intron (NR_135044, intron 1 of 3) 859 NR_135044 100506691 Hs.536336 NR_135044 ENSG00000256546 LOC100506691 - uncharacterized LOC100506691 ncRNA 583.667-7 chr6 38136856 38137482 + 2.66667 NA intron (NM_021943, intron 5 of 5) intron (NM_021943, intron 5 of 5) 317442 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 657.5 chr16 84510820 84511765 + 2.66667 NA Intergenic Intergenic -6633 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 237.5-36 chr6 52420166 52420347 + 2.66667 NA promoter-TSS (NM_018100) promoter-TSS (NM_018100) -86 NM_018100 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 588.833 chr2 205675868 205676335 + 2.66667 NA Intergenic Intergenic -6399 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 232.834-7 chr17 12742368 12742504 + 2.66667 NA intron (NM_001146312, intron 7 of 13) intron (NM_001146312, intron 7 of 13) -36301 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 509.501 chr19 37898447 37899097 + 2.66667 NA intron (NM_031951, intron 1 of 5) intron (NM_031951, intron 1 of 5) 7822 NM_031951 83889 Hs.664194 NM_031951 ENSG00000171804 WDR87 NYD-SP11 WD repeat domain 87 protein-coding 355.001 chr1 76998643 76998900 + 2.66667 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) -61372 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 731.333-3 chr6 115838627 115839230 + 2.66667 NA Intergenic MIRb|SINE|MIR -195093 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 639.5-2 chr12 52121697 52122083 + 2.66667 NA Intergenic Intergenic 28321 NR_120440 26628 Hs.524431 NR_120438 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 456-4 chr16 3267517 3267872 + 2.66667 NA TTS (NR_033904) TTS (NR_033904) 3926 NR_033904 283876 Hs.592092 NR_033904 ENSG00000281005 LINC00921 - long intergenic non-protein coding RNA 921 ncRNA 351.001-2 chr14 65478649 65478933 + 2.66667 NA intron (NM_004480, intron 2 of 9) MER57E1|LTR|ERV1 7689 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 487.833-2 chr1 214333629 214334212 + 2.66667 NA intron (NM_020197, intron 10 of 11) intron (NM_020197, intron 10 of 11) 52761 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 590.667-5 chr8 68490909 68491284 + 2.66667 NA intron (NR_146187, intron 4 of 13) intron (NR_146187, intron 4 of 13) -159605 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 457.333 chr18 69469262 69469556 + 2.66667 NA promoter-TSS (NR_134579) promoter-TSS (NR_134579) -522 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 1036.5 chrX 74535963 74536788 + 2.66667 NA Intergenic (TGGCCC)n|Simple_repeat|Simple_repeat 78249 NM_183353 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 376.5-2 chr10 28054302 28054798 + 2.66667 NA intron (NR_134518, intron 16 of 16) intron (NR_134518, intron 16 of 16) 18828 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 536-4 chr2 105545698 105546159 + 2.66667 NA Intergenic Intergenic 64631 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 296.5-22 chr7 31337713 31337841 + 2.66667 NA 3' UTR (NM_022728, exon 2 of 2) 3' UTR (NM_022728, exon 2 of 2) 2949 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 769.001-2 chr19 2648378 2649019 + 2.66667 NA intron (NM_052847, intron 1 of 4) intron (NM_052847, intron 1 of 4) 17983 NR_107004 102465838 NR_107004 ENSG00000277904 MIR7850 hsa-mir-7850 microRNA 7850 ncRNA 434.167-5 chr9 6827316 6827519 + 2.66667 NA intron (NR_148680, intron 4 of 21) intron (NR_148680, intron 4 of 21) 70067 NM_001304339 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 1103.33 chr1 152047720 152049011 + 2.66667 NA Intergenic (GGCTGT)n|Simple_repeat|Simple_repeat -11361 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 221.5-24 chr5 178461213 178461344 + 2.66667 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) 129115 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 371-5 chr16 8655044 8655503 + 2.66667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -19344 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 609.334 chr1 40979386 40979704 + 2.66667 NA promoter-TSS (NM_001905) promoter-TSS (NM_001905) -151 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 588.667 chr10 21292977 21293358 + 2.66667 NA Intergenic Intergenic 79783 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 944.501 chr17 44672308 44672962 + 2.66667 NA intron (NM_001145080, intron 6 of 7) intron (NM_001145080, intron 6 of 7) 16167 NM_001145080 284071 Hs.349758 NM_001033659 ENSG00000180336 MEIOC C17orf104 meiosis specific with coiled-coil domain protein-coding 344.667-15 chr8 47455534 47455713 + 2.66667 NA intron (NM_001080394, intron 8 of 19) L1MB4|LINE|L1 194685 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 315.333-24 chr9 112112715 112113105 + 2.66667 NA intron (NM_022486, intron 6 of 16) intron (NM_022486, intron 6 of 16) 62387 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 780.334 chr2 16147387 16148103 + 2.66667 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat 97318 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 515.167 chr1 22420236 22420585 + 2.66667 NA Intergenic Intergenic -31441 NM_014870 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 601.334 chr16 81737916 81738235 + 2.66667 NA Intergenic MER5B|DNA|hAT-Charlie -41216 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 288.667-17 chr6 162604058 162604308 + 2.66667 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -122949 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 271.5-37 chr7 48875466 48875736 + 2.66667 NA Intergenic Intergenic -48946 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 473.333-6 chr22 20741776 20742225 + 2.66667 NA intron (NM_058004, intron 32 of 54) intron (NM_058004, intron 32 of 54) -32113 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 465.333 chr1 161738800 161739179 + 2.66667 NA Intergenic L3|LINE|CR1 -10797 NM_007240 11266 Hs.416216 NM_007240 ENSG00000081721 DUSP12 DUSP1|YVH1 dual specificity phosphatase 12 protein-coding 470.667-5 chrX 70033010 70033824 + 2.66667 NA exon (NM_001399, exon 7 of 8) exon (NM_001399, exon 7 of 8) 10560 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 615 chr14 23120557 23121023 + 2.66667 NA Intergenic Intergenic -1179 NM_001805 1053 Hs.558308 NM_001805 ENSG00000092067 CEBPE C/EBP-epsilon|CRP1 CCAAT enhancer binding protein epsilon protein-coding 600.167-7 chr9 89602950 89603646 + 2.66667 NA Intergenic Intergenic -1714 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 636.667-2 chr8 10041419 10042145 + 2.66667 NA Intergenic Intergenic -12510 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 1239.5-2 chr17 41737458 41738439 + 2.66667 NA Intergenic L2b|LINE|L2 -3302 NM_001079871 9001 Hs.158300 NM_003949 ENSG00000173805 HAP1 HAP2|HIP5|HLP|hHLP1 huntingtin associated protein 1 protein-coding 999.168 chr10 15585079 15585994 + 2.66667 NA intron (NM_001291494, intron 22 of 28) intron (NM_001291494, intron 22 of 28) 134386 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 355.833-11 chr7 132049332 132049491 + 2.66667 NA Intergenic Intergenic 139191 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 645.5-2 chr1 177209191 177209599 + 2.66667 NA intron (NM_021165, intron 1 of 7) AmnSINE1|SINE|5S-Deu-L2 38437 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 479.5-4 chr8 98705488 98705708 + 2.66667 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 120073 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 466.834 chr3 100253893 100254403 + 2.66667 NA Intergenic Intergenic -6844 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 579.999 chr10 63269295 63269677 + 2.66667 NA promoter-TSS (NM_001318153) promoter-TSS (NM_001318153) -243 NM_001318153 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 818 chr1 8848877 8849503 + 2.66667 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat 17400 NR_106786 102465436 NR_106786 ENSG00000274258 MIR6728 hsa-mir-6728 microRNA 6728 ncRNA 583.166-2 chr5 82749560 82749879 + 2.66667 NA Intergenic Intergenic -90436 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 593.833 chr17 56319453 56320037 + 2.66667 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 166270 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 423.334-9 chr7 119197823 119198166 + 2.66667 NA Intergenic L1PA15-16|LINE|L1 709381 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 232-5 chr10 24008843 24009072 + 2.66667 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -199834 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 835.001 chr15 34342937 34343501 + 2.66667 NA promoter-TSS (NM_001284293) promoter-TSS (NM_001284293) -58 NM_018648 55505 Hs.14317 NM_018648 ENSG00000182117 NOP10 DKCB1|NOLA3|NOP10P NOP10 ribonucleoprotein protein-coding 314.5-12 chr21 40121103 40121525 + 2.66667 NA intron (NR_073202, intron 20 of 32) intron (NR_073202, intron 20 of 32) 91117 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 454-6 chr2 61144855 61145457 + 2.66667 NA promoter-TSS (NM_001367069) promoter-TSS (NM_001367069) 40 NM_001367069 339804 Hs.140617 NM_001143959 ENSG00000237651 C2orf74 - chromosome 2 open reading frame 74 protein-coding 707.833 chr19 56253652 56254173 + 2.66667 NA intron (NM_001322061, intron 2 of 6) Zaphod2|DNA|hAT-Tip100 -18836 NM_001354658 100506374 Hs.631532 NM_001354658 ENSG00000267710 EDDM13 - epididymal protein 13 protein-coding 812.667-3 chr8 18912091 18912611 + 2.66667 NA intron (NM_015310, intron 2 of 15) intron (NM_015310, intron 2 of 15) -25294 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 681.667 chr22 29470281 29470859 + 2.66667 NA Intergenic CpG -9648 NM_021076 4744 Hs.198760 NM_021076 ENSG00000100285 NEFH CMT2CC|NFH neurofilament heavy protein-coding 608.167 chr1 217747103 217747638 + 2.66667 NA intron (NM_138796, intron 6 of 10) intron (NM_138796, intron 6 of 10) 37750 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 829.167-2 chr5 135944794 135945429 + 2.66667 NA Intergenic Intergenic 9872 NM_002302 3950 Hs.512580 NM_002302 ENSG00000145826 LECT2 chm-II|chm2 leukocyte cell derived chemotaxin 2 protein-coding 415.334 chr1 210584267 210584782 + 2.66667 NA intron (NM_001122834, intron 9 of 11) intron (NM_001122834, intron 9 of 11) 255158 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 251.334-7 chr14 75177218 75177405 + 2.66667 NA promoter-TSS (NM_006827) promoter-TSS (NM_006827) -699 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 1445.33 chr22 42443999 42444811 + 2.66667 NA Intergenic Intergenic -6419 NM_001371362 487.5-8 chr17 40287272 40287852 + 2.66667 NA promoter-TSS (NM_001254) promoter-TSS (NM_001254) -317 NM_001254 990 Hs.405958 NM_001254 ENSG00000094804 CDC6 CDC18L|HsCDC18|HsCDC6|MGORS5 cell division cycle 6 protein-coding 530.167-3 chr5 15824503 15824754 + 2.66667 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -110554 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 875.333 chr15 75451553 75452663 + 2.66667 NA promoter-TSS (NM_001145358) promoter-TSS (NM_001145358) -418 NM_015477 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 464.667-6 chr5 137660264 137660707 + 2.66667 NA intron (NM_017415, intron 7 of 14) intron (NM_017415, intron 7 of 14) -12836 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 252.667-2 chr1 105940601 105940862 + 2.66667 NA intron (NR_146609, intron 5 of 5) L1PB1|LINE|L1 87522 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 836.5 chr7 54788454 54789329 + 2.66667 NA intron (NR_110040, intron 2 of 2) intron (NR_110040, intron 2 of 2) 29578 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 420.501 chr4 75895670 75895876 + 2.66667 NA intron (NM_006239, intron 2 of 16) AluJo|SINE|Alu 6679 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 1244.5 chr11 124668783 124669779 + 2.66667 NA intron (NM_001199922, intron 4 of 11) intron (NM_001199922, intron 4 of 11) 4458 NM_170601 54414 Hs.10056 NM_018978 ENSG00000110013 SIAE AIS6|CSE-C|CSEC|LSE|YSG2 sialic acid acetylesterase protein-coding 596.5 chr19 19139798 19140354 + 2.66667 NA Intergenic Intergenic -1598 NM_001256766 54929 Hs.631629 NM_017814 ENSG00000064545 TMEM161A AROS-29 transmembrane protein 161A protein-coding 670.333 chr17 74507778 74508408 + 2.66667 NA Intergenic L1M1|LINE|L1 23382 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 248.333-23 chr3 32399212 32399461 + 2.66667 NA intron (NM_138410, intron 1 of 4) intron (NM_138410, intron 1 of 4) 7483 NM_138410 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 1081 chr1 47738154 47739053 + 2.66667 NA Intergenic Intergenic 258782 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 448.334-2 chr9 92443171 92443393 + 2.66667 NA intron (NM_001286969, intron 4 of 6) L1M5|LINE|L1 -18728 NM_005014 4958 Hs.94070 NM_005014 ENSG00000127083 OMD OSAD|SLRR2C osteomodulin protein-coding 1038.33 chr17 35539545 35540150 + 2.66667 NA Intergenic MER34B-int|LTR|ERV1 -1986 NM_001363830 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 1165.17 chr1 44047808 44048658 + 2.66667 NA Intergenic Intergenic -16771 NM_001328630 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 657.501-2 chr16 53892225 53892586 + 2.66667 NA intron (NM_001363903, intron 7 of 7) intron (NM_001363903, intron 7 of 7) -146988 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 558.834 chr10 12902078 12902601 + 2.66667 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 99374 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 674.334 chr11 7352717 7353214 + 2.66667 NA intron (NM_175733, intron 3 of 6) Charlie7a|DNA|hAT-Charlie 101061 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 597.667-3 chr7 141976011 141976476 + 2.66667 NA Intergenic Intergenic -2470 NM_176817 5726 Hs.647085 NM_176817 ENSG00000257138 TAS2R38 PTC|T2R38|T2R61|THIOT taste 2 receptor member 38 protein-coding 664.999 chr7 129091390 129092079 + 2.66667 NA Intergenic Intergenic -34537 NR_002144 407835 Hs.592273 NR_002144 LOC407835 - mitogen-activated protein kinase kinase 2 pseudogene pseudo 480.5-3 chr12 77999840 78000272 + 2.66667 NA intron (NM_001024383, intron 7 of 39) intron (NM_001024383, intron 7 of 39) 169162 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 932.167-2 chr9 70924546 70925490 + 2.66667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -55966 NM_024971 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 934.5 chr11 33987660 33988402 + 2.66667 NA Intergenic Intergenic -63700 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 293.334-9 chr8 108751167 108751310 + 2.66667 NA intron (NR_136411, intron 1 of 3) MamTip2|DNA|hAT-Tip100 36356 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 629.5-3 chr5 87781713 87782190 + 2.66667 NA Intergenic Intergenic 119909 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 352.334-3 chr17 59714240 59714472 + 2.66667 NA intron (NM_001329394, intron 1 of 11) MSTC|LTR|ERVL-MaLR 6702 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 652.501-2 chr5 154610362 154611209 + 2.66667 NA Intergenic CpG -14713 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 629.333 chr17 55527473 55528035 + 2.66667 NA Intergenic Intergenic -105919 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 994.5 chr13 72696264 72697031 + 2.66667 NA Intergenic (TAATTT)n|Simple_repeat|Simple_repeat 30982 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 829.333 chr7 34087946 34088731 + 2.66667 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 182799 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 836.001 chr1 27608091 27608843 + 2.66667 NA Intergenic L2c|LINE|L2 -4973 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 406.834 chr11 15698497 15698785 + 2.66667 NA intron (NM_001293172, intron 1 of 2) intron (NM_001293172, intron 1 of 2) 54756 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 421.333-4 chr2 177498876 177499093 + 2.66667 NA intron (NM_003659, intron 13 of 19) intron (NM_003659, intron 13 of 19) 53812 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 404.5-8 chr6 42045493 42046019 + 2.66667 NA intron (NM_001287434, intron 1 of 4) intron (NM_001287434, intron 1 of 4) 3138 NM_001287434 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 485.667 chr1 34156731 34156950 + 2.66667 NA intron (NM_052896, intron 1 of 69) intron (NM_052896, intron 1 of 69) 8434 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 939.5 chr10 69629764 69630238 + 2.66667 NA promoter-TSS (NM_145306) promoter-TSS (NM_145306) -246 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 451.334 chr12 1634741 1635201 + 2.66667 NA intron (NM_032642, intron 3 of 4) intron (NM_032642, intron 3 of 4) 5740 NM_032642 81029 Hs.306051 NM_030775 ENSG00000111186 WNT5B - Wnt family member 5B protein-coding 445.334-4 chr18 27599379 27599792 + 2.66667 NA Intergenic Intergenic -256929 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 635.333 chr12 6689132 6689937 + 2.66667 NA promoter-TSS (NM_001039920) promoter-TSS (NM_001039920) 38 NM_001039920 171017 Hs.103315 NM_133476 ENSG00000126746 ZNF384 CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 zinc finger protein 384 protein-coding 795 chr17 47649273 47649939 + 2.66667 NA promoter-TSS (NM_002265) promoter-TSS (NM_002265) -313 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 463.001-2 chr12 16033709 16033968 + 2.66667 NA intron (NM_015954, intron 7 of 8) intron (NM_015954, intron 7 of 8) 122506 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 541.666-3 chr8 118347269 118347669 + 2.66667 NA intron (NM_001363274, intron 4 of 4) MER68|LTR|ERVL -235650 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 594.5 chr1 214332650 214333086 + 2.66667 NA intron (NM_020197, intron 10 of 11) intron (NM_020197, intron 10 of 11) 51709 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 425.667-2 chr2 11222178 11222394 + 2.66667 NA intron (NM_001321643, intron 7 of 32) intron (NM_001321643, intron 7 of 32) 66819 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 620.334-3 chrX 51641485 51641844 + 2.66667 NA Intergenic Intergenic -22746 NM_001355276 347549 NM_001355276 ENSG00000224109 CENPVL3 CENPVP3 centromere protein V like 3 protein-coding 241.333-23 chr3 192481688 192481852 + 2.66667 NA intron (NM_004113, intron 2 of 5) MLT1L|LTR|ERVL-MaLR -33252 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 323.667-11 chr14 69792940 69793066 + 2.66667 NA intron (NM_003049, intron 1 of 4) L1ME3C|LINE|L1 4238 NM_003049 6554 Hs.952 NM_003049 ENSG00000100652 SLC10A1 NTCP solute carrier family 10 member 1 protein-coding 193.167-15 chr2 39913708 39913816 + 2.66667 NA Intergenic Intergenic -3872 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 198.667-8 chr13 92716846 92716938 + 2.66667 NA intron (NR_046520, intron 1 of 3) MIRc|SINE|MIR 3063 NR_049776 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 401.834 chr21 31758182 31758425 + 2.66667 NA Intergenic Intergenic -26185 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 506.834 chr17 79876209 79876565 + 2.66667 NA Intergenic L1MD2|LINE|L1 -36947 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 1201.33 chr6 27751978 27752727 + 2.66667 NA Intergenic LTR41|LTR|ERVL -9392 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 269.667-17 chr3 65102073 65102210 + 2.66667 NA Intergenic Intergenic -414141 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 1070.5-2 chr3 73868484 73869131 + 2.66667 NA intron (NR_146637, intron 2 of 3) intron (NR_146637, intron 2 of 3) 59563 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 414.167-8 chr8 80684059 80684224 + 2.66667 NA intron (NM_001033723, intron 4 of 8) MIRb|SINE|MIR 190327 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 862.334 chr1 200488559 200489279 + 2.66667 NA Intergenic Intergenic -78883 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 297-21 chr4 67871838 67872134 + 2.66667 NA intron (NM_004262, intron 1 of 9) intron (NM_004262, intron 1 of 9) 12016 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 643.167 chr21 18950717 18951031 + 2.66667 NA Intergenic L1ME2z|LINE|L1 -191062 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 1165.33 chr4 115090101 115090937 + 2.66667 NA intron (NM_022569, intron 1 of 13) intron (NM_022569, intron 1 of 13) 23101 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 294.5-16 chr2 187571702 187571936 + 2.66667 NA Intergenic Intergenic -17314 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 492.334 chr14 62321663 62322024 + 2.66667 NA Intergenic Intergenic -181870 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 195-2 chr1 112298674 112298809 + 2.66667 NA Intergenic Intergenic -97473 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 275-30 chr8 53851559 53851959 + 2.66667 NA promoter-TSS (NM_001286674) promoter-TSS (NM_001286674) -36 NM_001286674 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 498.334-2 chr20 4076831 4077227 + 2.66667 NA Intergenic LTR47B4|LTR|ERVL -61471 NM_001134337 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 1184.33-2 chr5 45038166 45039040 + 2.66667 NA Intergenic Intergenic 229656 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 519.166-2 chr1 231866413 231866874 + 2.66667 NA TTS (NM_001012959) TTS (NM_001012959) -48126 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 359.833-5 chr8 81287986 81288326 + 2.66667 NA Intergenic Intergenic 7620 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 619.334 chr1 237386548 237387026 + 2.66667 NA intron (NM_001035, intron 8 of 104) intron (NM_001035, intron 8 of 104) -84332 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 596.334-2 chr14 41925334 41925606 + 2.66667 NA Intergenic Intergenic 318614 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 350.334-3 chr11 13241784 13241981 + 2.66667 NA Intergenic L1ME4c|LINE|L1 -34770 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 818.667-2 chr16 51982459 51983431 + 2.66667 NA Intergenic Intergenic 90990 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 376-2 chr14 25413554 25413784 + 2.66667 NA Intergenic Intergenic -363372 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 493.001 chr16 87580548 87581172 + 2.66667 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -20975 NR_073379 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 638.167 chr13 50087601 50087971 + 2.66667 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 5617 NR_002605 10301 Hs.591229 NM_005887 ENSG00000176124 DLEU1 BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 deleted in lymphocytic leukemia 1 ncRNA 782.833-3 chr3 62332589 62333222 + 2.66667 NA intron (NM_001291941, intron 5 of 5) intron (NM_001291941, intron 5 of 5) 13883 NM_001291941 57415 Hs.47166 NM_020685 ENSG00000114405 C3orf14 HT021 chromosome 3 open reading frame 14 protein-coding 448.5-5 chr15 91951087 91951343 + 2.66667 NA intron (NR_135775, intron 2 of 10) L1MB7|LINE|L1 96911 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 711.333 chr10 11758029 11758523 + 2.66667 NA intron (NM_024693, intron 4 of 4) intron (NM_024693, intron 4 of 4) 15894 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 398.834 chr12 4354142 4354353 + 2.66667 NA 3' UTR (NM_020375, exon 6 of 6) 3' UTR (NM_020375, exon 6 of 6) 25465 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 546.833-5 chr8 124418435 124419037 + 2.66667 NA Intergenic L1MDa|LINE|L1 -32084 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 1007.67-2 chr2 111705675 111706435 + 2.66667 NA Intergenic Intergenic 65079 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 1228.67 chr16 10180846 10182038 + 2.66667 NA intron (NM_001134408, intron 1 of 13) CpG 625 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 827.334 chr1 77683375 77684209 + 2.66667 NA promoter-TSS (NM_001308237) promoter-TSS (NM_001308237) -365 NM_001308237 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 886.501-2 chr2 45607666 45608364 + 2.66667 NA intron (NM_018079, intron 1 of 20) Charlie2a|DNA|hAT-Charlie 3252 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 758.833 chr19 14074992 14075507 + 2.66667 NA TTS (NR_111941) TTS (NR_111941) 1888 NR_106715 102466515 NR_106715 ENSG00000284081 MIR1199 hsa-mir-1199 microRNA 1199 ncRNA 398.167-5 chr4 137996862 137997076 + 2.66667 NA Intergenic Intergenic -92045 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 340.834-10 chr8 57113659 57113914 + 2.66667 NA Intergenic Intergenic -104490 NR_038235 100507651 Hs.371831 NR_038235 ENSG00000253301 LINC01606 - long intergenic non-protein coding RNA 1606 ncRNA 563.334-2 chr10 112720811 112721282 + 2.66667 NA intron (NM_001365713, intron 8 of 8) MIR|SINE|MIR 86876 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 498.833-5 chr4 107050471 107050743 + 2.66667 NA Intergenic Intergenic -14294 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 560.666 chr2 120109542 120110177 + 2.66667 NA intron (NM_001330310, intron 16 of 24) L2a|LINE|L2 96782 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 847.666-3 chrX 48025589 48026102 + 2.66667 NA Intergenic LTR55|LTR|ERVL? 18104 NM_001079900 729201 Hs.319319 NM_001079900 ENSG00000171478 SPACA5B LYZL5B sperm acrosome associated 5B protein-coding 560 chr12 88579042 88579499 + 2.66667 NA intron (NM_000899, intron 1 of 9) intron (NM_000899, intron 1 of 9) 1201 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 480.667-3 chr19 37902341 37902827 + 2.66667 NA intron (NM_031951, intron 1 of 5) intron (NM_031951, intron 1 of 5) 4010 NM_031951 83889 Hs.664194 NM_031951 ENSG00000171804 WDR87 NYD-SP11 WD repeat domain 87 protein-coding 691.001 chr12 3753102 3753635 + 2.66667 NA promoter-TSS (NM_032680) promoter-TSS (NM_032680) -259 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 502.834-5 chr7 56535463 56535796 + 2.66667 NA non-coding (NR_108099, exon 2 of 2) non-coding (NR_108099, exon 2 of 2) 2501 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 459.166-2 chr3 172819880 172820134 + 2.66667 NA intron (NM_001349095, intron 25 of 25) intron (NM_001349095, intron 25 of 25) 69005 NM_001349096 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 437.167 chr15 58645120 58645349 + 2.66667 NA intron (NM_001110, intron 6 of 15) intron (NM_001110, intron 6 of 15) 48373 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 567.834-2 chr3 1086168 1086425 + 2.66667 NA Intergenic A-rich|Low_complexity|Low_complexity -6728 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 942 chr17 74864829 74865485 + 2.66667 NA intron (NM_004110, intron 6 of 11) L2a|LINE|L2 3596 NM_001258016 2232 Hs.69745 NM_004110 ENSG00000161513 FDXR ADR|ADXR|ANOA ferredoxin reductase protein-coding 960.666 chr12 53451370 53452299 + 2.66667 NA promoter-TSS (NM_001128911) promoter-TSS (NM_001128911) -268 NM_001128913 5094 Hs.546271 NM_005016 ENSG00000197111 PCBP2 HNRNPE2|HNRPE2|hnRNP-E2 poly(rC) binding protein 2 protein-coding 606.167 chr10 91298195 91298782 + 2.66667 NA Intergenic Intergenic 77825 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 1096.67-3 chr3 32018913 32019606 + 2.66667 NA Intergenic Intergenic -37409 NM_001174060 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 945-2 chr2 15577043 15577558 + 2.66667 NA Intergenic Intergenic -14568 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 887.166 chr4 111630633 111631281 + 2.66667 NA Intergenic Intergenic -514497 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 599.833-2 chr1 240004060 240004710 + 2.66667 NA Intergenic Intergenic -3139 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 376.167-3 chr10 80829822 80830044 + 2.66667 NA Intergenic L1M1|LINE|L1 180136 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 389 chr1 174747484 174747872 + 2.66667 NA intron (NM_001366451, intron 2 of 12) intron (NM_001366451, intron 2 of 12) 46683 NM_001366452 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 352.167-8 chr20 22798927 22799085 + 2.66667 NA Intergenic Intergenic -113662 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 1115-2 chr1 100455289 100455906 + 2.66667 NA intron (NM_001319211, intron 8 of 14) intron (NM_001319211, intron 8 of 14) -82542 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 234.834-3 chr13 39966417 39966533 + 2.66667 NA Intergenic Intergenic -215334 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 491.334 chr7 41614576 41614836 + 2.66667 NA Intergenic Intergenic -79213 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 523.167-2 chr10 70842186 70842406 + 2.66667 NA intron (NM_003901, intron 2 of 14) L1ME3G|LINE|L1 26348 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 818.168 chr6 16510756 16511326 + 2.66667 NA intron (NM_000332, intron 6 of 8) intron (NM_000332, intron 6 of 8) 249143 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 715.167-2 chr7 77696064 77696708 + 2.66667 NA promoter-TSS (NR_134251) promoter-TSS (NR_134251) -73 NM_198467 222194 Hs.72451 NM_198467 ENSG00000187257 RSBN1L - round spermatid basic protein 1 like protein-coding 538.001 chr11 114892675 114893022 + 2.66667 NA Intergenic Intergenic 214321 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 619.333-2 chr2 100742653 100743076 + 2.66667 NA Intergenic Intergenic -77275 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 923.666-2 chr7 12638473 12639274 + 2.66667 NA intron (NR_156701, intron 10 of 14) intron (NR_156701, intron 10 of 14) -47954 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 901.001 chr5 4511741 4512302 + 2.66667 NA Intergenic Intergenic -261460 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 923.333-2 chr3 169744574 169745029 + 2.66667 NA Intergenic Intergenic 20259 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 614.833-3 chr22 39316400 39317219 + 2.66667 NA promoter-TSS (NR_000026) promoter-TSS (NR_000026) 87 NR_000026 116936 NR_000026 SNORD139 RNU86|U82|U86 small nucleolar RNA, C/D box 139 snoRNA 369.501-2 chr8 71141845 71142090 + 2.66667 NA Intergenic Intergenic 214739 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 553.334-4 chr4 91113060 91113366 + 2.66667 NA intron (NM_001145065, intron 10 of 10) L2c|LINE|L2 878182 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 673.667 chr20 266657 267237 + 2.66667 NA Intergenic Intergenic 9223 NM_207469 400830 Hs.516819 NM_207469 ENSG00000186458 DEFB132 BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827 defensin beta 132 protein-coding 413.334 chr1 16983496 16983656 + 2.66667 NA Intergenic Intergenic -1990 NM_017459 4237 Hs.389137 NM_002403 ENSG00000117122 MFAP2 MAGP|MAGP-1|MAGP1 microfibril associated protein 2 protein-coding 632.5-4 chr5 122704398 122704891 + 2.66667 NA intron (NR_109881, intron 5 of 11) intron (NR_109881, intron 5 of 11) 25916 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 530.168 chr14 51652877 51653262 + 2.66667 NA intron (NM_001267046, intron 1 of 13) intron (NM_001267046, intron 1 of 13) 1159 NM_152330 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 584-2 chr8 54171620 54171924 + 2.66667 NA Intergenic Intergenic 36531 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 1044.5 chr13 97017807 97018605 + 2.66667 NA Intergenic Intergenic -23476 NM_001346197 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 412.667-2 chr13 107205244 107205767 + 2.66667 NA intron (NM_001080396, intron 2 of 2) intron (NM_001080396, intron 2 of 2) 115458 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 459.834 chr1 41313570 41313877 + 2.66667 NA Intergenic MLT1H2|LTR|ERVL-MaLR -47711 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 301.334-5 chr20 61272189 61272367 + 2.66667 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 20017 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 389.834-2 chr6 135144953 135145194 + 2.66667 NA Intergenic Intergenic -36235 NM_001161658 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 553.499 chrX 40573673 40574147 + 2.66667 NA Intergenic MSTD|LTR|ERVL-MaLR -7060 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 450.333-8 chr4 32462929 32463179 + 2.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 112016 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 687.167 chr21 20882342 20882972 + 2.66667 NA Intergenic Intergenic -79549 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 501.667-2 chr17 61548597 61548830 + 2.66667 NA Intergenic L1MEi|LINE|L1 42506 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 614.834-2 chr6 152354469 152354778 + 2.66667 NA intron (NM_033071, intron 67 of 145) intron (NM_033071, intron 67 of 145) -25907 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 759.001 chr1 17128264 17128773 + 2.66667 NA Intergenic LTR24B|LTR|ERV1 -9067 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 504.001-2 chr4 165061111 165061314 + 2.66667 NA Intergenic Intergenic 29213 NM_152620 166655 Hs.368004 NM_152620 ENSG00000176979 TRIM60 RNF129|RNF33 tripartite motif containing 60 protein-coding 317.167-4 chr11 107576521 107577079 + 2.66667 NA Intergenic LTR8|LTR|ERV1 -11065 NM_001301010 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 584.167-2 chr6 4546680 4546975 + 2.66667 NA Intergenic Intergenic 58029 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 699.834-2 chr6 151014285 151014737 + 2.66667 NA intron (NM_001350486, intron 22 of 27) intron (NM_001350486, intron 22 of 27) 7503 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 432.334-4 chr9 114738988 114739307 + 2.66667 NA Intergenic Intergenic 53383 NM_001204344 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 342.167-8 chr5 87611435 87611667 + 2.66667 NA Intergenic Intergenic -50491 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 415.334-2 chr12 40370695 40370926 + 2.66667 NA Intergenic Intergenic -22584 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 297.5-18 chr5 159321389 159321513 + 2.66667 NA intron (NM_002187, intron 4 of 7) L1ME4a|LINE|L1 9022 NM_002187 3593 Hs.674 NM_002187 ENSG00000113302 IL12B CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2 interleukin 12B protein-coding 318.5-15 chr7 130070288 130070546 + 2.66667 NA promoter-TSS (NM_014997) promoter-TSS (NM_014997) -117 NM_014997 23008 Hs.520710 NM_014997 ENSG00000128607 KLHDC10 slim kelch domain containing 10 protein-coding 455.001-2 chr17 29157208 29157497 + 2.66667 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) -16963 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 767.667 chr18 53379742 53380676 + 2.66667 NA intron (NM_005215, intron 15 of 28) intron (NM_005215, intron 15 of 28) 143108 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 686.501 chr15 92918079 92918627 + 2.66667 NA intron (NM_001042572, intron 2 of 12) intron (NM_001042572, intron 2 of 12) 13954 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 554.167 chr17 65294104 65294417 + 2.66667 NA Intergenic Intergenic 156890 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 380.334-6 chr20 31327673 31327840 + 2.66667 NA Intergenic L1MA9|LINE|L1 -19171 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 471.833-3 chr6 2450783 2451138 + 2.66667 NA Intergenic Intergenic -183540 NR_149119 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 696.499-2 chr19 43432664 43433094 + 2.66667 NA Intergenic L1ME3|LINE|L1 17989 NM_001130011 83639 Hs.97978 NM_031451 ENSG00000131126 TEX101 CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP testis expressed 101 protein-coding 261.334-5 chr19 17303355 17303509 + 2.66667 NA promoter-TSS (NM_024527) promoter-TSS (NM_024527) -7 NM_024527 79575 Hs.515664 NM_024527 ENSG00000127220 ABHD8 - abhydrolase domain containing 8 protein-coding 604.999 chr6 24580842 24581219 + 2.66667 NA intron (NM_001350410, intron 7 of 21) intron (NM_001350410, intron 7 of 21) 2197 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 710.001-2 chr7 27577464 27577940 + 2.66667 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -38272 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 258.5-19 chr22 29850142 29850309 + 2.66667 NA Intergenic Intergenic -11951 NM_001369923 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 233.333-33 chr8 62699303 62699450 + 2.66667 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -278485 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 377.333-2 chr16 88743568 88744005 + 2.66667 NA non-coding (NR_120387, exon 2 of 3) non-coding (NR_120387, exon 2 of 3) 1019 NR_120387 339059 Hs.449817 NR_120387 ENSG00000182376 LOC339059 - uncharacterized LOC339059 ncRNA 246.167-4 chr11 57480286 57480558 + 2.66667 NA Intergenic Intergenic 19894 NM_178570 349667 Hs.502618 NM_178570 ENSG00000186907 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor like 2 protein-coding 604.667-3 chr3 160413784 160414276 + 2.66667 NA intron (NM_001002800, intron 8 of 23) intron (NM_001002800, intron 8 of 23) 9285 NR_029525 406951 NR_029525 ENSG00000198987 MIR16-2 MIRN16-2|mir-16-2|mir-16-3 microRNA 16-2 ncRNA 888.5 chr15 63890939 63892080 + 2.66667 NA Intergenic MIR|SINE|MIR -20490 NR_029944 494334 NR_029944 ENSG00000199156 MIR422A MIRN422A microRNA 422a ncRNA 435.834-2 chr2 107046423 107046846 + 2.66667 NA Intergenic Intergenic -159525 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 755-3 chr16 71499708 71500030 + 2.66667 NA Intergenic Intergenic -10545 NM_006961 7567 Hs.660076 NM_006961 ENSG00000157429 ZNF19 KOX12 zinc finger protein 19 protein-coding 1035.17-2 chr15 40891797 40892487 + 2.66667 NA Intergenic FRAM|SINE|Alu -2308 NM_020857 57617 Hs.23876 NM_020857 ENSG00000104142 VPS18 PEP3 VPS18 core subunit of CORVET and HOPS complexes protein-coding 718.667-2 chr6 152338500 152339107 + 2.66667 NA intron (NM_182961, intron 75 of 145) intron (NM_182961, intron 75 of 145) -41727 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 561.5-3 chr7 139074857 139075468 + 2.66667 NA intron (NM_020119, intron 6 of 12) MER20|DNA|hAT-Charlie -31005 NR_162108 113218503 NR_162108 MIR10399 - microRNA 10399 ncRNA 481.167-2 chr10 113384891 113385427 + 2.66667 NA Intergenic Intergenic -165672 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 440.834-5 chr21 8995025 8995490 + 2.66667 NA Intergenic Intergenic 7640 NR_162105 113218501 NR_162105 MIR10396A - microRNA 10396a ncRNA 780.001-2 chr2 163781942 163782425 + 2.66667 NA Intergenic Intergenic -46175 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 1110.83-2 chr1 228130747 228131568 + 2.66667 NA Intergenic ERV24_Prim-int|LTR|ERV1 -8927 NM_001242839 2987 Hs.376933 NM_000858 ENSG00000143774 GUK1 GMK guanylate kinase 1 protein-coding 604.666 chr1 201170523 201170962 + 2.66667 NA intron (NM_001288564, intron 1 of 5) intron (NM_001288564, intron 1 of 5) 840 NM_001288564 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 781.833-3 chr3 49671636 49672335 + 2.66667 NA TTS (NM_003458) TTS (NM_003458) -2366 NM_001640 327 Hs.517969 NM_001640 ENSG00000164062 APEH AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH acylaminoacyl-peptide hydrolase protein-coding 516.167 chr9 76303211 76303496 + 2.66667 NA intron (NM_001190482, intron 27 of 36) intron (NM_001190482, intron 27 of 36) 91073 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 238-22 chr3 177195871 177195996 + 2.66667 NA intron (NM_001321194, intron 1 of 16) intron (NM_001321194, intron 1 of 16) 545 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 365.334-3 chr12 26871610 26871851 + 2.66667 NA Intergenic Intergenic -38536 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 437.333-4 chr6 100271890 100272141 + 2.66667 NA Intergenic Intergenic 191660 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 910.667-2 chr2 26745731 26746515 + 2.66667 NA Intergenic Intergenic -18161 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 462.666-6 chr9 86615258 86615576 + 2.66667 NA Intergenic Intergenic -261007 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 811.833 chr11 13183155 13184007 + 2.66667 NA Intergenic Intergenic -93071 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 530.167-2 chr14 71855635 71855906 + 2.66667 NA Intergenic Intergenic -76401 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 1153.5-2 chr8 130014962 130015698 + 2.66667 NA intron (NM_001353245, intron 1 of 13) intron (NM_001353245, intron 1 of 13) 1230 NM_001353243 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 729.167-2 chr16 13453692 13454376 + 2.66667 NA Intergenic Intergenic -466123 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 1080.5-2 chr2 226985053 226985788 + 2.66667 NA intron (NM_001349069, intron 8 of 8) intron (NM_001349069, intron 8 of 8) 149366 NM_001349071 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 423.333-7 chr18 27363812 27364133 + 2.66667 NA Intergenic Intergenic -21316 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 508.334 chr1 32062600 32062968 + 2.66667 NA Intergenic Intergenic -9247 NM_001319677 55116 Hs.25544 NM_018056 ENSG00000121775 TMEM39B - transmembrane protein 39B protein-coding 690.833-3 chr3 104628269 104628823 + 2.66667 NA Intergenic Intergenic -738167 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 795.666 chr12 54579644 54580139 + 2.66667 NA TTS (NM_001315535) TTS (NM_001315535) 8768 NM_006741 5502 Hs.505662 NM_006741 ENSG00000135447 PPP1R1A I1|IPP1 protein phosphatase 1 regulatory inhibitor subunit 1A protein-coding 526.5 chr1 48870790 48871023 + 2.66667 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -93937 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 450.667 chr11 6712580 6712889 + 2.66667 NA TTS (NR_003945) TTS (NR_003945) 9145 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 238.667-13 chr19 57099289 57099570 + 2.66667 NA Intergenic CpG -20712 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 542.667-4 chrX 68732835 68733141 + 2.66667 NA Intergenic Intergenic 39349 NM_001142504 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 722 chr1 110630557 110631206 + 2.66667 NA intron (NM_001204269, intron 1 of 4) intron (NM_001204269, intron 1 of 4) 559 NM_001204269 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 409.667-3 chr13 79541037 79541866 + 2.66667 NA intron (NM_001161407, intron 4 of 7) intron (NM_001161407, intron 4 of 7) -25276 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 1222 chr8 70839354 70840088 + 2.66667 NA Intergenic Intergenic 170382 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 456-6 chr2 58778610 58778853 + 2.66667 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 257978 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 302.334-10 chr4 55018281 55018490 + 2.66667 NA Intergenic (TTTTTAT)n|Simple_repeat|Simple_repeat 107210 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 225-23 chr3 20054723 20054845 + 2.66667 NA intron (NM_003884, intron 1 of 17) intron (NM_003884, intron 1 of 17) 14338 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 1188.5-2 chr8 139212693 139214049 + 2.66667 NA Intergenic Intergenic -299330 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 959.499 chr15 77959238 77959848 + 2.66667 NA Intergenic Intergenic -14982 NR_157580 440292 NR_157580 LOC440292 - COMM domain containing 4 pseudogene pseudo 641.167-3 chr3 128795003 128795633 + 2.66667 NA intron (NM_004637, intron 1 of 5) intron (NM_004637, intron 1 of 5) -51490 NR_162138 113219457 NR_162138 MIR12124 - microRNA 12124 ncRNA 464.001-3 chr5 96752370 96752546 + 2.66667 NA intron (NM_001042446, intron 15 of 26) intron (NM_001042446, intron 15 of 26) 8856 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 1361.5 chr2 219154652 219155510 + 2.66667 NA intron (NM_024782, intron 3 of 7) intron (NM_024782, intron 3 of 7) 5784 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 621-2 chr2 26330176 26330455 + 2.66667 NA intron (NR_135916, intron 1 of 12) L1MD2|LINE|L1 -11213 NM_001145169 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 272.334-6 chr3 168088536 168088882 + 2.66667 NA intron (NM_001308155, intron 1 of 14) intron (NM_001308155, intron 1 of 14) 7215 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 396.667-4 chr20 59570749 59571318 + 2.66667 NA Intergenic L1MB7|LINE|L1 -6476 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 642.834-3 chrX 107655289 107655680 + 2.66667 NA Intergenic Intergenic 27060 NM_002764 5631 Hs.56 NM_002764 ENSG00000147224 PRPS1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI phosphoribosyl pyrophosphate synthetase 1 protein-coding 285.667-24 chrX 50580124 50580390 + 2.66667 NA Intergenic MER5A|DNA|hAT-Charlie -109432 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 626.834-3 chr8 138830903 138831310 + 2.66667 NA intron (NM_152888, intron 5 of 64) intron (NM_152888, intron 5 of 64) 82935 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 415.501 chr12 25744757 25745044 + 2.66667 NA Intergenic Intergenic -96322 NM_001145727 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 560.167-2 chr2 117772398 117772996 + 2.66667 NA Intergenic Intergenic -41994 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 707.001 chr8 140238082 140238753 + 2.66667 NA intron (NM_001160372, intron 16 of 22) intron (NM_001160372, intron 16 of 22) -137882 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 349.334-6 chr4 56068404 56068658 + 2.66667 NA Intergenic L2a|LINE|L2 -101664 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 299.167-7 chr10 74331179 74331346 + 2.66667 NA intron (NM_001369124, intron 4 of 9) intron (NM_001369124, intron 4 of 9) 154499 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 433.5 chr1 9950230 9950558 + 2.66667 NA TTS (NR_158969) TTS (NR_158969) 6919 NM_022787 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 421.667-3 chr16 68520851 68521157 + 2.66667 NA Intergenic Intergenic -18209 NM_001305204 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 549.333-2 chr4 49710624 49711070 + 2.66667 NA Intergenic SAR|Satellite|Satellite 724205 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 362.333-8 chr16 87968783 87968998 + 2.66667 NA intron (NM_001173542, intron 1 of 12) HAL1ME|LINE|L1 -1128 NM_001173543 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 606.167-2 chr12 101773196 101773728 + 2.66667 NA intron (NM_024312, intron 7 of 20) intron (NM_024312, intron 7 of 20) -33990 NM_001177948 50511 Hs.506504 NM_153694 ENSG00000139351 SYCP3 COR1|RPRGL4|SCP3|SPGF4 synaptonemal complex protein 3 protein-coding 295.333-16 chr22 29603235 29603547 + 2.66667 NA promoter-TSS (NM_016418) promoter-TSS (NM_016418) -165 NM_181833 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 276-8 chr14 46918280 46918406 + 2.66667 NA intron (NM_001113498, intron 10 of 16) intron (NM_001113498, intron 10 of 16) -266562 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 481.834 chr1 25608758 25609014 + 2.66667 NA Intergenic Intergenic -8582 NM_001289010 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 560.333-3 chr17 80008169 80008668 + 2.66667 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) 27454 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 657.667-3 chr5 9207977 9208421 + 2.66667 NA intron (NM_003966, intron 8 of 22) intron (NM_003966, intron 8 of 22) -154304 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 467-8 chr9 100011217 100011487 + 2.66667 NA intron (NM_015051, intron 8 of 11) intron (NM_015051, intron 8 of 11) 87648 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 581.667-2 chr17 71084457 71084856 + 2.66667 NA Intergenic Intergenic 117523 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 355-9 chr3 118950118 118950317 + 2.66667 NA intron (NM_001353325, intron 1 of 7) intron (NM_001353325, intron 1 of 7) 7141 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 703.001 chr3 128846030 128846417 + 2.66667 NA promoter-TSS (NR_162138) promoter-TSS (NR_162138) -585 NR_162138 113219457 NR_162138 MIR12124 - microRNA 12124 ncRNA 432.667-4 chr14 45627745 45627942 + 2.66667 NA Intergenic Intergenic 87759 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 476.5-6 chr8 77954695 77954909 + 2.66667 NA Intergenic Intergenic 504105 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 825-2 chr10 72337120 72337877 + 2.66667 NA intron (NR_157570, intron 6 of 8) intron (NR_157570, intron 6 of 8) 17421 NR_157570 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 673.167-2 chr19 47012861 47013393 + 2.66667 NA Intergenic Intergenic -6710 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 375.333-9 chr6 118283749 118283981 + 2.66667 NA intron (NM_001029858, intron 6 of 7) intron (NM_001029858, intron 6 of 7) 197962 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 848.001 chr19 41363799 41364263 + 2.66667 NA promoter-TSS (NM_001098825) promoter-TSS (NM_001098825) 65 NM_001098825 641649 Hs.709417 NM_001042595 ENSG00000142046 TMEM91 DSPC3|IFITMD6 transmembrane protein 91 protein-coding 187.167-21 chr22 44202596 44202722 + 2.66667 NA intron (NM_022141, intron 12 of 13) intron (NM_022141, intron 12 of 13) 21734 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 441.667-4 chr2 99921058 99921252 + 2.66667 NA intron (NM_001025108, intron 6 of 23) L1ME2|LINE|L1 184428 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 303.833-10 chr5 51795428 51795578 + 2.66667 NA Intergenic Intergenic -212528 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 616-2 chr7 88400954 88401422 + 2.66667 NA Intergenic Intergenic -94294 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 870.999-2 chr3 115085382 115086072 + 2.66667 NA intron (NM_001348800, intron 1 of 11) intron (NM_001348800, intron 1 of 11) -14313 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 645.167-4 chr7 4631741 4632106 + 2.66667 NA Intergenic Intergenic -50372 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 390-10 chr6 132406577 132406867 + 2.66667 NA Intergenic Intergenic -5247 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 769.166-2 chr7 80047795 80048282 + 2.66667 NA Intergenic Intergenic -86793 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 720.501 chr7 16982586 16983058 + 2.66667 NA Intergenic Intergenic -100839 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 399.5-4 chr11 14476347 14476538 + 2.66667 NA intron (NM_016451, intron 12 of 21) intron (NM_016451, intron 12 of 21) 23416 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 425-7 chr2 102352982 102353249 + 2.66667 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat -2681 NM_001371422 406.833-5 chr19 56332574 56332870 + 2.66667 NA intron (NM_001322072, intron 2 of 6) L1PA16|LINE|L1 -17883 NM_001322065 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 630.334 chr2 7672033 7672615 + 2.66667 NA Intergenic Intergenic 227331 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 627-4 chr5 75049619 75050216 + 2.66667 NA intron (NM_001366737, intron 2 of 3) intron (NM_001366737, intron 2 of 3) 2641 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 340.667-8 chr2 69567379 69567521 + 2.66667 NA intron (NM_014911, intron 2 of 21) L2b|LINE|L2 -47279 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 478.333 chr17 75412316 75412860 + 2.66667 NA Intergenic Intergenic 6519 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 402 chr1 224152990 224153238 + 2.66667 NA intron (NM_001136115, intron 3 of 3) intron (NM_001136115, intron 3 of 3) -30126 NM_003676 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 628.167 chr6 132829846 132830426 + 2.66667 NA Intergenic Intergenic 12917 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 562.001 chr12 40944259 40944549 + 2.66667 NA intron (NM_001256064, intron 14 of 15) intron (NM_001256064, intron 14 of 15) 36047 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 583.834 chr8 27592367 27593003 + 2.66667 NA Intergenic Intergenic 18066 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 945.333 chrX 132092579 132093233 + 2.66667 NA intron (NM_194277, intron 5 of 11) L2b|LINE|L2 35114 NM_001306193 90167 Hs.170776 NM_194277 ENSG00000165694 FRMD7 NYS|NYS1|XIPAN FERM domain containing 7 protein-coding 414.167-5 chr12 79420103 79420583 + 2.66667 NA intron (NM_001291901, intron 8 of 9) intron (NM_001291901, intron 8 of 9) 1086 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 511.5-4 chr2 226797100 226797439 + 2.66667 NA exon (NM_005544, exon 1 of 2) exon (NM_005544, exon 1 of 2) 1521 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 644.667-2 chr12 2844228 2844743 + 2.66667 NA intron (NR_147202, intron 14 of 15) AluSx|SINE|Alu -9450 NM_031474 83714 Hs.530816 NM_031474 ENSG00000053702 NRIP2 - nuclear receptor interacting protein 2 protein-coding 1218.33-2 chrX 97446101 97446700 + 2.66667 NA intron (NM_006729, intron 26 of 26) intron (NM_006729, intron 26 of 26) 118135 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 775.834 chr18 25921411 25921954 + 2.66667 NA Intergenic Intergenic 168931 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 511.334-2 chr15 57532835 57533142 + 2.66667 NA intron (NM_032866, intron 14 of 18) intron (NM_032866, intron 14 of 18) -58916 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 611.5-3 chr2 70861729 70862467 + 2.66667 NA Intergenic Intergenic -25773 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 296.5-23 chr8 33022252 33022443 + 2.66667 NA Intergenic L1MD1|LINE|L1 300512 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 702.167 chr2 197378397 197379024 + 2.66667 NA Intergenic Intergenic 56383 NM_012433 23451 Hs.632554 NM_012433 ENSG00000115524 SF3B1 Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 splicing factor 3b subunit 1 protein-coding 263.667-20 chr5 156371234 156371394 + 2.66667 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 44150 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 262.5-19 chr3 173094585 173094800 + 2.66667 NA intron (NM_031955, intron 2 of 10) (T)n|Simple_repeat|Simple_repeat 46543 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 889.167 chr5 90439468 90440076 + 2.66667 NA Intergenic Intergenic 29772 NR_105024 731157 Hs.551062 NR_105024 ENSG00000255647 LOC731157 - uncharacterized LOC731157 ncRNA 1146.83-3 chr20 36773850 36774824 + 2.66667 NA promoter-TSS (NM_001145318) promoter-TSS (NM_001145318) -574 NM_001145317 79980 Hs.632268 NM_024918 ENSG00000149636 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1 component of MIS12 kinetochore complex protein-coding 905.668 chr8 52420630 52421275 + 2.66667 NA Intergenic Intergenic -11073 NM_001352838 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 940.166 chr10 62437472 62438172 + 2.66667 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -62695 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 413-2 chr11 42699663 42700002 + 2.66667 NA Intergenic MIRc|SINE|MIR -446142 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 523.999-3 chr2 187870995 187871307 + 2.66667 NA Intergenic MER39|LTR|ERV1 -316646 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 413.667-2 chr10 91633098 91633312 + 2.66667 NA promoter-TSS (NM_005398) promoter-TSS (NM_005398) -134 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 213.167-29 chr7 77892503 77892617 + 2.66667 NA intron (NM_001366089, intron 2 of 18) intron (NM_001366089, intron 2 of 18) 52430 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 836.667 chr15 71443127 71443919 + 2.66667 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -103713 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 913.168 chr1 7669234 7669910 + 2.66667 NA promoter-TSS (NM_001349614) promoter-TSS (NM_001349614) -158 NM_001349614 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 958.001 chr2 119641394 119642186 + 2.66667 NA intron (NR_073132, intron 22 of 24) intron (NR_073132, intron 22 of 24) -37377 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 274.667-30 chrX 103778105 103778262 + 2.66667 NA intron (NM_001305004, intron 1 of 6) MIRc|SINE|MIR 1330 NM_001305004 5354 Hs.1787 NM_000533 ENSG00000123560 PLP1 GPM6C|HLD1|MMPL|PLP|PLP/DM20|PMD|SPG2 proteolipid protein 1 protein-coding 238.333-34 chr5 144918264 144918378 + 2.66667 NA Intergenic Intergenic 712930 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 534.167 chr1 85708115 85708628 + 2.66667 NA promoter-TSS (NM_001170670) promoter-TSS (NM_001170670) 62 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 1211.17 chr8 66471156 66471993 + 2.66667 NA Intergenic Intergenic -21992 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 312.667-20 chr6 53679555 53679998 + 2.66667 NA Intergenic Intergenic -14020 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 422.167-6 chr5 81507058 81507333 + 2.66667 NA intron (NM_001256734, intron 4 of 15) intron (NM_001256734, intron 4 of 15) -113061 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 691.334 chr4 119628827 119629360 + 2.66667 NA promoter-TSS (NM_001083) promoter-TSS (NM_001083) -289 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 342.833-15 chr5 36404091 36404324 + 2.66667 NA Intergenic Intergenic -102305 NM_145000 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 343.333-4 chr12 25210834 25211044 + 2.66667 NA intron (NM_001369787, intron 4 of 4) intron (NM_001369787, intron 4 of 4) 15702 NM_001001660 144363 Hs.209151 NM_001001660 ENSG00000205707 ETFRF1 LYRM5 electron transfer flavoprotein regulatory factor 1 protein-coding 608.334-2 chr13 102580289 102580727 + 2.66667 NA Intergenic X6B_LINE|LINE|CR1 -16478 NM_001367947 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 561.167-2 chr11 62560487 62560930 + 2.66667 NA promoter-TSS (NR_037427) promoter-TSS (NR_037427) -402 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 277.667-9 chr14 48968247 48968390 + 2.66667 NA Intergenic Intergenic 618062 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 703.666 chr1 160085386 160086144 + 2.66667 NA intron (NM_004983, intron 2 of 2) intron (NM_004983, intron 2 of 2) 4227 NM_004983 3765 Hs.66726 NM_004983 ENSG00000162728 KCNJ9 GIRK3|KIR3.3 potassium voltage-gated channel subfamily J member 9 protein-coding 671.167 chr1 156382893 156383173 + 2.66667 NA intron (NR_046115, intron 9 of 10) intron (NR_046115, intron 9 of 10) 13822 NM_001256396 57127 Hs.131835 NM_020407 ENSG00000132677 RHBG SLC42A2 Rh family B glycoprotein (gene/pseudogene) protein-coding 451.834-5 chr8 46863162 46863331 + 2.66667 NA Intergenic BSR/Beta|Satellite|Satellite 22360 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 360-15 chr6 37719040 37719329 + 2.66667 NA Intergenic Intergenic -21301 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 923.334 chr1 98050699 98051593 + 2.66667 NA Intergenic Intergenic -1453 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 302.167-4 chr12 38743833 38743992 + 2.66667 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 161679 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 513.333 chr5 72822352 72822748 + 2.66667 NA intron (NM_001364292, intron 1 of 24) intron (NM_001364292, intron 1 of 24) 5889 NM_001364295 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 604.167 chr7 100966089 100966416 + 2.66667 NA intron (NM_005960, intron 8 of 11) intron (NM_005960, intron 8 of 11) -3371 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 694.834 chr19 34096254 34096756 + 2.66667 NA Intergenic Intergenic -75999 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 345-12 chr2 202178264 202178503 + 2.66667 NA intron (NM_001277372, intron 15 of 23) intron (NM_001277372, intron 15 of 23) 60214 NM_001005781 7341 Hs.81424 NM_003352 ENSG00000116030 SUMO1 DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1 small ubiquitin like modifier 1 protein-coding 532 chr11 126990528 126990798 + 2.66667 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -2121 NR_036126 100422918 NR_036126 ENSG00000266215 MIR3167 - microRNA 3167 ncRNA 757.334-2 chr2 208072405 208073000 + 2.66667 NA Intergenic L2a|LINE|L2 -46427 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 642.334 chr12 81257895 81258568 + 2.66667 NA 3' UTR (NM_001330242, exon 16 of 16) 3' UTR (NM_001330242, exon 16 of 16) -20958 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 639.5 chr10 6109069 6109395 + 2.66667 NA intron (NM_032905, intron 6 of 11) intron (NM_032905, intron 6 of 11) 19886 NM_001145547 84991 Hs.498548 NM_032905 ENSG00000134453 RBM17 SPF45 RNA binding motif protein 17 protein-coding 505.667-2 chr17 52420757 52420977 + 2.66667 NA intron (NR_146898, intron 1 of 3) L2b|LINE|L2 30345 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 631.168 chr1 185970133 185970618 + 2.66667 NA exon (NM_031935, exon 15 of 107) exon (NM_031935, exon 15 of 107) 235984 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 614.834 chr15 26838513 26838889 + 2.66667 NA Intergenic Intergenic -28361 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 377.333 chr13 60384971 60385165 + 2.66667 NA Intergenic Intergenic -11389 NM_030794 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 327.333-10 chr6 49797741 49797971 + 2.66667 NA Intergenic Intergenic -10571 NM_138733 5232 Hs.367727 NM_138733 ENSG00000170950 PGK2 HEL-S-272|PGKB|PGKPS|dJ417L20.2 phosphoglycerate kinase 2 protein-coding 925.333 chr3 133040943 133041995 + 2.66667 NA intron (NM_023943, intron 1 of 5) intron (NM_023943, intron 1 of 5) 3181 NM_023943 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 256.5-12 chr15 48358269 48358621 + 2.66667 NA Intergenic Intergenic 26248 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 422.667 chr1 115570092 115570352 + 2.66667 NA Intergenic LTR37-int|LTR|ERV1 -71748 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 333.334 chr1 100984369 100984616 + 2.66667 NA Intergenic L1ME1|LINE|L1 41292 NM_015958 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 483.333-4 chr5 129113719 129114032 + 2.66667 NA 3' UTR (NM_016048, exon 5 of 5) 3' UTR (NM_016048, exon 5 of 5) 16187 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 903 chr12 54725142 54725693 + 2.66667 NA Intergenic MER34-int|LTR|ERV1 -77052 NM_001300854 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 993.167-2 chr2 234545063 234545743 + 2.66667 NA Intergenic Intergenic -48322 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 1123.17-2 chr8 125431480 125432469 + 2.66667 NA promoter-TSS (NM_001282985) promoter-TSS (NM_001282985) -235 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 347.667-15 chr8 87340834 87341134 + 2.66667 NA intron (NM_173538, intron 8 of 10) L1M4|LINE|L1 474569 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 799.001 chr14 37796131 37796517 + 2.66667 NA exon (NM_001310135, exon 21 of 33) exon (NM_001310135, exon 21 of 33) 23941 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 271.334-18 chrX 74449735 74449875 + 2.66667 NA intron (NM_006517, intron 1 of 5) intron (NM_006517, intron 1 of 5) 28312 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 938.168 chr22 26460920 26461664 + 2.66667 NA intron (NR_146315, intron 12 of 14) intron (NR_146315, intron 12 of 14) 18196 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 1145.67 chr1 219416446 219417041 + 2.66667 NA Intergenic MER66C|LTR|ERV1 140581 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 439.001 chr17 33686372 33686625 + 2.66667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -152738 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 551.834 chr12 110099949 110100346 + 2.66667 NA Intergenic Intergenic -24210 NM_014055 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19 intraflagellar transport 81 protein-coding 365.5-13 chr6 150729406 150729625 + 2.66667 NA intron (NM_001329803, intron 1 of 13) intron (NM_001329803, intron 1 of 13) 8416 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 249.333-28 chrX 45824638 45824820 + 2.66667 NA Intergenic Intergenic 26761 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 552.666-2 chr5 40835211 40835791 + 2.66667 NA promoter-TSS (NM_000997) promoter-TSS (NM_000997) -279 NR_159993 6167 Hs.80545 NM_000997 ENSG00000145592 RPL37 L37 ribosomal protein L37 protein-coding 540.333 chr17 72609413 72610083 + 2.66667 NA intron (NR_033876, intron 3 of 4) intron (NR_033876, intron 3 of 4) -16944 NR_137281 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 665.5 chr3 190892188 190892484 + 2.66667 NA Intergenic Intergenic 14406 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 460.667-5 chr17 74873141 74873417 + 2.66667 NA promoter-TSS (NM_004110) promoter-TSS (NM_004110) -285 NM_004110 2232 Hs.69745 NM_004110 ENSG00000161513 FDXR ADR|ADXR|ANOA ferredoxin reductase protein-coding 651.334-2 chr5 142699241 142699555 + 2.66667 NA Intergenic Charlie2a|DNA|hAT-Charlie -1328 NM_001257205 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 340.834-5 chr2 9975981 9976219 + 2.66667 NA intron (NM_198182, intron 8 of 15) intron (NM_198182, intron 8 of 15) 24407 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 504.666-6 chr7 139646064 139646330 + 2.66667 NA intron (NM_001113239, intron 2 of 14) intron (NM_001113239, intron 2 of 14) 122512 NM_001353368 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 486.666 chr1 191831721 191832005 + 2.66667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -326599 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 869.334 chr11 33039185 33039978 + 2.66667 NA promoter-TSS (NM_018393) promoter-TSS (NM_018393) 9 NM_018393 55346 Hs.655341 NM_018393 ENSG00000176148 TCP11L1 dJ85M6.3 t-complex 11 like 1 protein-coding 289.167-12 chr20 42446273 42446396 + 2.66667 NA intron (NM_133170, intron 9 of 31) Charlie18a|DNA|hAT-Charlie -239149 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 508.001-2 chr7 100691875 100692100 + 2.66667 NA Intergenic Intergenic -2539 NM_022574 64599 Hs.414396 NM_022574 ENSG00000146830 GIGYF1 GYF1|PERQ1 GRB10 interacting GYF protein 1 protein-coding 640.166 chr14 69248121 69248565 + 2.66667 NA Intergenic Intergenic -11815 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 573.332 chr7 77277766 77278185 + 2.66667 NA intron (NM_020879, intron 11 of 18) intron (NM_020879, intron 11 of 18) -78156 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 711.5-3 chr6 168711040 168711500 + 2.66667 NA Intergenic Intergenic 253112 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 692.333-3 chr4 62709588 62710119 + 2.66667 NA Intergenic Intergenic -548088 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 944.667-2 chr3 124558774 124559635 + 2.66667 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -25454 NM_001322995 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 228.5 chr1 178774317 178774506 + 2.66667 NA intron (NM_152663, intron 1 of 19) intron (NM_152663, intron 1 of 19) 49167 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 396.333 chr1 153060750 153060912 + 2.66667 NA Intergenic Intergenic -3319 NM_005988 6700 Hs.355542 NM_005988 ENSG00000241794 SPRR2A - small proline rich protein 2A protein-coding 578.667 chr1 103514928 103515450 + 2.66667 NA intron (NM_001347929, intron 1 of 5) intron (NM_001347929, intron 1 of 5) 10322 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 722.5 chr5 157328148 157328613 + 2.66667 NA intron (NM_001037333, intron 19 of 30) L2b|LINE|L2 17297 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 398.333-17 chr9 109903718 109904041 + 2.66667 NA intron (NM_053016, intron 3 of 6) intron (NM_053016, intron 3 of 6) 123681 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 568.333-2 chr4 84750404 84750702 + 2.66667 NA intron (NM_014991, intron 36 of 67) intron (NM_014991, intron 36 of 67) 167426 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 329.834-2 chr13 43497945 43498175 + 2.66667 NA intron (NM_001347965, intron 1 of 15) intron (NM_001347965, intron 1 of 15) 49208 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 1101.83-3 chr5 51960391 51961603 + 2.66667 NA Intergenic Intergenic -47034 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 194.667-32 chr19 47699476 47699566 + 2.66667 NA intron (NM_015711, intron 14 of 14) intron (NM_015711, intron 14 of 14) -13901 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 535.167-2 chr18 61435281 61435730 + 2.66667 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 102075 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 819.5-4 chr7 104847929 104848852 + 2.66667 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -44298 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 775.833-2 chr14 32513502 32514007 + 2.66667 NA intron (NM_004274, intron 2 of 13) L1ME4a|LINE|L1 184456 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 916.834 chr10 79929259 79930194 + 2.66667 NA intron (NR_033857, intron 5 of 5) intron (NR_033857, intron 5 of 5) 9548 NR_002724 8512 Hs.733579 NR_002724 ENSG00000242600 MBL1P COLEC3P|MBL1P1 mannose binding lectin 1, pseudogene pseudo 402.5-3 chr19 49391573 49391762 + 2.66667 NA intron (NM_144688, intron 2 of 19) MER33|DNA|hAT-Charlie 3418 NM_144688 147872 Hs.662085 NM_144688 ENSG00000161609 CCDC155 KASH5 coiled-coil domain containing 155 protein-coding 465.834-2 chr20 8751316 8751857 + 2.66667 NA intron (NM_182734, intron 23 of 32) intron (NM_182734, intron 23 of 32) -79599 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 1126-3 chr4 42280317 42280975 + 2.66667 NA Intergenic AluJb|SINE|Alu 110622 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 1644.33-2 chr4 82284248 82285851 + 2.66667 NA Intergenic CpG 88942 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 1186.83 chr17 77086279 77087092 + 2.66667 NA Intergenic Intergenic -1958 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 399.833-2 chr2 191566038 191566636 + 2.66667 NA Intergenic Intergenic -111735 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 404.834-5 chr4 40283807 40284293 + 2.66667 NA Intergenic AluSc|SINE|Alu -23135 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 660.334 chr11 65573845 65574507 + 2.66667 NA TTS (NM_001098784) TTS (NM_001098784) 1638 NM_152832 23625 Hs.731854 NM_152832 ENSG00000176973 FAM89B LRAP25|MTVR|MTVR1 family with sequence similarity 89 member B protein-coding 382.334-8 chr8 79176058 79176337 + 2.66667 NA Intergenic Intergenic -155991 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 320.5-5 chr11 111513923 111514380 + 2.66667 NA promoter-TSS (NM_207430) promoter-TSS (NM_207430) 574 NM_001367974 54766 Hs.128180 NM_017589 ENSG00000137707 BTG4 APRO3|PC3B BTG anti-proliferation factor 4 protein-coding 667.167-2 chr8 81359624 81359974 + 2.66667 NA Intergenic Intergenic 79263 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 423.001-2 chr13 101757614 101758085 + 2.66667 NA intron (NM_175929, intron 3 of 4) intron (NM_175929, intron 3 of 4) 158796 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 813.333-2 chr17 75844959 75845753 + 2.66667 NA promoter-TSS (NM_199242) promoter-TSS (NM_199242) -639 NM_199242 201294 Hs.41045 NM_199242 ENSG00000092929 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D protein-coding 508.667-3 chr9 82606681 82607198 + 2.66667 NA Intergenic Intergenic 456203 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 627.999 chr12 76031987 76032413 + 2.66667 NA promoter-TSS (NM_007350) promoter-TSS (NM_007350) -424 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 366.667-9 chr6 146098355 146098500 + 2.66667 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 69229 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 780.5-2 chrX 153609451 153610128 + 2.66667 NA Intergenic Intergenic 10449 NR_131982 105373383 Hs.547831 NR_131982 ENSG00000260081 LOC105373383 - uncharacterized LOC105373383 ncRNA 458.334-3 chr4 67088060 67088291 + 2.66667 NA Intergenic Intergenic 333825 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 752 chr17 20116841 20117509 + 2.66667 NA intron (NM_001033553, intron 3 of 14) intron (NM_001033553, intron 3 of 14) 30153 NM_001033553 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 463.334 chr10 55488903 55489409 + 2.66667 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -109886 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 537.833-2 chr7 97117475 97118216 + 2.66667 NA exon (NM_020186, exon 1 of 2) exon (NM_020186, exon 1 of 2) 1252 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 483.167-5 chr4 72886902 72887148 + 2.66667 NA Intergenic MIR|SINE|MIR 182691 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 1075.83 chr1 197923831 197924793 + 2.66667 NA intron (NM_001370213, intron 3 of 4) intron (NM_001370213, intron 3 of 4) 6940 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 455.833-2 chr3 129053310 129053567 + 2.66667 NA Intergenic Intergenic -7329 NM_000174 2815 Hs.1144 NM_000174 ENSG00000169704 GP9 CD42a|GPIX glycoprotein IX platelet protein-coding 567.334-2 chr4 85148639 85148887 + 2.66667 NA Intergenic Intergenic 181279 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 306.667-23 chr7 151754060 151754314 + 2.66667 NA intron (NM_016203, intron 3 of 15) intron (NM_016203, intron 3 of 15) -17873 NM_001304527 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 641.166 chr12 13863992 13864591 + 2.66667 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 116065 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 572.5-2 chr7 34133454 34133952 + 2.66667 NA intron (NM_133468, intron 14 of 15) MER21C|LTR|ERVL 228164 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 253.334-9 chr17 50862244 50862381 + 2.66667 NA TTS (NM_001243885) TTS (NM_001243885) 4042 NM_005749 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 1135.33 chr5 18698218 18699354 + 2.66667 NA Intergenic LTR13_|LTR|ERVK 891512 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 410.833-2 chr14 74363203 74363407 + 2.66667 NA Intergenic Intergenic 14834 NM_018228 55237 Hs.578167 NM_018228 ENSG00000133980 VRTN C14orf115|vertnin vertebrae development associated protein-coding 653.833-2 chr22 36180135 36180880 + 2.66667 NA Intergenic LTR57-int|LTR|ERVL -14330 NM_145641 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 664.5 chr10 73263860 73264317 + 2.66667 NA intron (NM_001367801, intron 26 of 27) L1MC4a|LINE|L1 11347 NR_134458 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 570.001 chr18 63994949 63995555 + 2.66667 NA intron (NM_001348367, intron 6 of 7) MER76-int|LTR|ERVL 25171 NM_001348368 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 C18orf53|CAP2|PI-8|PI8|PSS5 serpin family B member 8 protein-coding 369.5-11 chr2 126227186 126227452 + 2.66667 NA Intergenic Intergenic -109334 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 474.834-2 chr5 150939136 150939395 + 2.66667 NA intron (NR_026867, intron 4 of 4) L1MB8|LINE|L1 7319 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 1031.67-2 chr8 41828677 41829596 + 2.66667 NA intron (NM_001142446, intron 1 of 42) CpG -31514 NM_020476 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 286.167-8 chr12 114668209 114668374 + 2.66667 NA Intergenic Intergenic 15884 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 471.999 chr1 121407356 121407656 + 2.66667 NA Intergenic A-rich|Low_complexity|Low_complexity -9601 NR_104189 100873165 Hs.568525 NR_104189 ENSG00000230806 SRGAP2-AS1 - SRGAP2 antisense RNA 1 ncRNA 2196.33 chr19 30668699 30670427 + 2.66667 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 297179 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 777.333-2 chr9 95127768 95128497 + 2.66667 NA intron (NM_001243744, intron 8 of 13) intron (NM_001243744, intron 8 of 13) -42038 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 527.001-2 chr3 38480084 38480394 + 2.66667 NA intron (NM_001106, intron 7 of 10) Charlie1|DNA|hAT-Charlie -16033 NR_153327 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 388.5-8 chrX 27016164 27016431 + 2.66667 NA Intergenic Intergenic 447044 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 519.5-2 chr17 48593926 48594468 + 2.66667 NA promoter-TSS (NM_002147) promoter-TSS (NM_002147) -456 NM_002147 3215 Hs.654456 NM_002147 ENSG00000120075 HOXB5 HHO.C10|HOX2|HOX2A|HU-1|Hox2.1 homeobox B5 protein-coding 435.001 chr11 23658975 23659188 + 2.66667 NA Intergenic Intergenic -239891 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 375.667-11 chr4 22389400 22389730 + 2.66667 NA intron (NM_145290, intron 17 of 18) intron (NM_145290, intron 17 of 18) -49899 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 907.501 chr6 152897738 152898576 + 2.66667 NA Intergenic Intergenic 84884 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 1369.33 chr4 87838188 87840170 + 2.66667 NA intron (NM_020203, intron 3 of 3) intron (NM_020203, intron 3 of 3) 4476 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 349-4 chr10 41875329 41875552 + 2.66667 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 492605 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 599.501 chr22 23591278 23591722 + 2.66667 NA Intergenic Intergenic -11210 NM_020070 3543 Hs.348935 NM_020070 ENSG00000128322 IGLL1 14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2 immunoglobulin lambda like polypeptide 1 protein-coding 568.834-2 chr5 82793775 82794065 + 2.66667 NA Intergenic Intergenic -46235 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 247.833 chr1 236609249 236609380 + 2.66667 NA Intergenic Intergenic -4798 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 170.167-17 chr15 78415544 78415659 + 2.66667 NA Intergenic Intergenic -21830 NM_001354994 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA iron responsive element binding protein 2 protein-coding 473.334-3 chr2 9139642 9139928 + 2.66667 NA Intergenic Intergenic -66980 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 335-15 chrX 95346136 95346340 + 2.66667 NA Intergenic Intergenic -283012 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 1805.5 chr10 46228317 46229749 + 2.66667 NA intron (NR_103828, intron 2 of 2) L1PA17|LINE|L1 40575 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 696.166 chr6 125313643 125314368 + 2.66667 NA Intergenic Intergenic -12038 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 514.167-4 chr9 134778826 134779051 + 2.66667 NA intron (NM_001278074, intron 27 of 65) intron (NM_001278074, intron 27 of 65) 70431 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 264.333 chr1 10731183 10731502 + 2.66667 NA intron (NM_001079843, intron 2 of 20) AluJb|SINE|Alu 65304 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 535-2 chr16 10341921 10342408 + 2.66667 NA Intergenic LTR8B|LTR|ERV1 -43897 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 240.333 chr1 33295431 33295714 + 2.66667 NA intron (NM_001370212, intron 7 of 7) intron (NM_001370212, intron 7 of 7) 25526 NM_001080438 127550 NM_001080438 ENSG00000184389 A3GALT2 A3GALT2P|IGB3S|IGBS3S alpha 1,3-galactosyltransferase 2 protein-coding 1081.83 chr18 864371 864990 + 2.66667 NA Intergenic Intergenic -40191 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 823.5 chr13 48579988 48580792 + 2.66667 NA intron (NR_051983, intron 1 of 2) intron (NR_051983, intron 1 of 2) 511 NR_051983 100129597 Hs.175225 NR_051983 ENSG00000233610 LINC00462 - long intergenic non-protein coding RNA 462 ncRNA 923 chr10 79487862 79488569 + 2.66667 NA Intergenic Intergenic 22767 NR_136625 729815 Hs.564060 NR_136624 ENSG00000235705 LOC729815 - uncharacterized LOC729815 ncRNA 630.667-2 chr14 94486177 94486744 + 2.66667 NA TTS (NM_173850) TTS (NM_173850) -10263 NM_001284275 327657 Hs.317970 NM_175739 ENSG00000170054 SERPINA9 GCET1|SERPINA11|SERPINA11b serpin family A member 9 protein-coding 347-17 chr2 128374211 128374388 + 2.66667 NA Intergenic Intergenic -55431 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 401.501-4 chrX 66201339 66201597 + 2.66667 NA intron (NM_001367233, intron 12 of 20) intron (NM_001367233, intron 12 of 20) 33718 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 1102.5-3 chr21 24514044 24514878 + 2.66667 NA intron (NR_135519, intron 1 of 2) intron (NR_135519, intron 1 of 2) 85721 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 456-5 chr17 10630882 10631193 + 2.66667 NA intron (NM_002470, intron 36 of 40) intron (NM_002470, intron 36 of 40) 26272 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 253.334-10 chr2 40928132 40928241 + 2.66667 NA Intergenic L1ME4b|LINE|L1 -415751 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 511.5-5 chr20 50460898 50461394 + 2.66667 NA Intergenic MIRb|SINE|MIR -49175 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 722.834 chr22 24837748 24838131 + 2.66667 NA intron (NM_001098498, intron 2 of 23) LTR13|LTR|ERVK 31718 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 763.833-2 chr19 32971679 32972509 + 2.66667 NA promoter-TSS (NM_001300978) promoter-TSS (NM_001300978) -136 NM_032816 84902 Hs.599703 NM_032816 ENSG00000121289 CEP89 CCDC123|CEP123 centrosomal protein 89 protein-coding 854.667 chr19 6516140 6516998 + 2.66667 NA Intergenic CpG -13721 NM_001289123 10382 Hs.110837 NM_006087 ENSG00000104833 TUBB4A DYT4|TUBB4|beta-5 tubulin beta 4A class IVa protein-coding 612.5-2 chr17 7561093 7561600 + 2.66667 NA promoter-TSS (NR_037926) promoter-TSS (NR_037926) -573 NM_015670 26168 Hs.513926 NM_015670 ENSG00000161956 SENP3 SMT3IP1|SSP3|Ulp1 SUMO specific peptidase 3 protein-coding 840.833-2 chr1 40849959 40850644 + 2.66667 NA Intergenic Intergenic 12062 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 590.833 chr2 63544234 63544615 + 2.66667 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) 44053 NR_148705 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 379.667-7 chr7 133109554 133109728 + 2.66667 NA Intergenic Intergenic -1130 NR_133931 105375512 Hs.521205 NR_133931 LOC105375512 - uncharacterized LOC105375512 ncRNA 662.167 chr14 59278330 59278650 + 2.66667 NA intron (NM_001270520, intron 2 of 24) MER44D|DNA|TcMar-Tigger 15049 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 260.167-24 chr8 75504348 75504476 + 2.66667 NA intron (NM_001330561, intron 3 of 11) intron (NM_001330561, intron 3 of 11) -35556 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 582.001 chr22 41403746 41404131 + 2.66667 NA Intergenic Intergenic 21996 NM_003216 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF transcription factor, PAR bZIP family member protein-coding 593 chr2 88599858 88600365 + 2.66667 NA intron (NM_004836, intron 2 of 16) intron (NM_004836, intron 2 of 16) 24818 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 348.5-5 chr10 68988687 68989127 + 2.66667 NA exon (NM_015634, exon 1 of 7) exon (NM_015634, exon 1 of 7) 104 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 218.167-12 chr18 58121935 58122125 + 2.66667 NA intron (NM_001144964, intron 1 of 30) intron (NM_001144964, intron 1 of 30) -27290 NM_001144965 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 445.334-5 chr4 147235541 147235770 + 2.66667 NA Intergenic Intergenic 109062 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 795.001 chr12 112518406 112518712 + 2.66667 NA Intergenic Intergenic -56677 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 821.334 chr2 44955089 44956216 + 2.66667 NA Intergenic CpG -13774 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 878.501 chr12 90959406 90960169 + 2.66667 NA Intergenic Intergenic -4611 NM_152638 196477 Hs.128574 NM_152638 ENSG00000197651 CCER1 C12orf12 coiled-coil glutamate rich protein 1 protein-coding 448.334 chr13 93373403 93373617 + 2.66667 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 146703 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 238.167-4 chr10 49592838 49593260 + 2.66667 NA Intergenic Intergenic -16046 NM_020984 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 1229.84 chr5 141208246 141209118 + 2.66667 NA promoter-TSS (NM_018932) promoter-TSS (NM_018932) -37 NM_018932 56124 Hs.429820 NM_018932 ENSG00000120328 PCDHB12 PCDH-BETA12 protocadherin beta 12 protein-coding 329.167-5 chr11 76527261 76527427 + 2.66667 NA intron (NM_001300942, intron 14 of 21) intron (NM_001300942, intron 14 of 21) 82319 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 935.167 chr17 79612614 79613277 + 2.66667 NA Intergenic Intergenic -1894 NM_001350451 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 360.5-4 chr17 47811900 47812101 + 2.66667 NA intron (NM_145798, intron 16 of 22) L1ME4b|LINE|L1 9794 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 327.666-6 chr5 12679556 12679921 + 2.66667 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 11879 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 740.832 chr12 7938203 7938671 + 2.66667 NA Intergenic Intergenic -2250 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 301.667-6 chr14 24058166 24058726 + 2.66667 NA intron (NM_138360, intron 17 of 39).2 intron (NM_138360, intron 17 of 39).2 6437 NM_138360 90668 Hs.26135 NM_138360 ENSG00000186648 CARMIL3 C14orf121|LRRC16B|crml-1 capping protein regulator and myosin 1 linker 3 protein-coding 1791.5 chr5 117454327 117455982 + 2.66667 NA intron (NR_046089, intron 2 of 5) L1PA17|LINE|L1 39642 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 395.333-2 chr1 88973430 88973765 + 2.66667 NA intron (NM_001349447, intron 2 of 13) intron (NM_001349447, intron 2 of 13) 19032 NM_001162536 494115 Hs.481898 NM_019610 ENSG00000213516 RBMXL1 RBM1 RBMX like 1 protein-coding 1157.33 chr17 42997555 42998693 + 2.66667 NA promoter-TSS (NR_146327) promoter-TSS (NR_146327) -149 NM_001349921 6155 Hs.514196 NM_000988 ENSG00000131469 RPL27 DBA16|L27 ribosomal protein L27 protein-coding 502.001-3 chr8 75977610 75977833 + 2.66667 NA Intergenic Intergenic -428933 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 793.167 chr1 40532800 40533513 + 2.66667 NA 5' UTR (NM_152373, exon 2 of 5) 5' UTR (NM_152373, exon 2 of 5) 1519 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 576.667-3 chr2 58367799 58368160 + 2.66667 NA Intergenic L1MB8|LINE|L1 92102 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 829 chr1 204363571 204364182 + 2.66667 NA Intergenic Intergenic -3947 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 697.168-2 chr4 120065782 120066223 + 2.66667 NA intron (NM_002358, intron 1 of 4) intron (NM_002358, intron 1 of 4) 846 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 365.334-7 chr3 190458388 190458531 + 2.66667 NA Intergenic Intergenic -8583 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 390.333-12 chrX 86322858 86323110 + 2.66667 NA intron (NM_001139515, intron 1 of 11) LTR25-int|LTR|ERV1 60016 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 316.333-7 chr13 24038938 24039277 + 2.66667 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) 59305 NR_104595 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 1082.83-3 chr6 104524889 104526148 + 2.66667 NA Intergenic Intergenic 334028 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 347.333-17 chr7 20745134 20745374 + 2.66667 NA exon (NM_001163941, exon 26 of 28) exon (NM_001163941, exon 26 of 28) 41632 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 513.166-2 chr20 45445921 45446384 + 2.66667 NA intron (NR_159957, intron 2 of 3) L2a|LINE|L2 18730 NR_159957 105372631 Hs.729907 NR_159957 LOC105372631 - uncharacterized LOC105372631 ncRNA 475.167-3 chr9 90107130 90107477 + 2.66667 NA Intergenic Intergenic -65804 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 286.666 chr11 50479634 50479834 + 2.66667 NA Intergenic ALR/Alpha|Satellite|centr 70587 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 494.167-2 chr11 22483508 22483895 + 2.66667 NA intron (NR_120583, intron 1 of 3) Helitron1Nb_Mam|RC|Helitron 8318 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 327.667-8 chr2 25607689 25607819 + 2.66667 NA intron (NM_033147, intron 4 of 19) intron (NM_033147, intron 4 of 19) 42468 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 307.5-11 chr15 70568305 70568568 + 2.66667 NA Intergenic Zaphod|DNA|hAT-Tip100 18170 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 501-4 chr2 10048931 10049415 + 2.66667 NA intron (NM_001177716, intron 3 of 3) MER3|DNA|hAT-Charlie 4928 NM_001177718 8462 Hs.12229 NM_003597 ENSG00000172059 KLF11 FKLF|FKLF1|MODY7|TIEG2|Tieg3 Kruppel like factor 11 protein-coding 531.499-2 chr14 52531905 52532316 + 2.66667 NA intron (NM_020784, intron 6 of 20) intron (NM_020784, intron 6 of 20) 20395 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 778.334 chr14 32072842 32073247 + 2.66667 NA Intergenic Intergenic 3655 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 786.5-2 chr3 132029072 132029795 + 2.66667 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 6009 NM_130808 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 1875.17 chr3 146640611 146641849 + 2.66667 NA Intergenic Intergenic -35014 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 614.166 chr1 206734475 206735124 + 2.66667 NA TTS (NM_032960) TTS (NM_032960) -35974 NM_153758 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 853.333 chr4 180666003 180666816 + 2.66667 NA Intergenic Intergenic 492740 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 1365.17 chr8 138767129 138768374 + 2.66667 NA intron (NM_152888, intron 16 of 64) intron (NM_152888, intron 16 of 64) 146290 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 770.334-2 chr4 129362441 129363138 + 2.66667 NA Intergenic Intergenic 266637 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 478.666-2 chr3 101721460 101721751 + 2.66667 NA Intergenic Intergenic -3009 NM_001303401 79598 Hs.444135 NM_024548 ENSG00000182504 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97 protein-coding 1012.67-2 chr2 71545463 71546117 + 2.66667 NA intron (NM_001130985, intron 17 of 54) L1ME4a|LINE|L1 79091 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 1057.5 chr7 98841671 98842691 + 2.66667 NA Intergenic AluSx1|SINE|Alu 27833 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 927.833 chr1 210393455 210394427 + 2.66667 NA intron (NM_001170564, intron 4 of 9).2 MamSINE1|SINE|tRNA-RTE 64575 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 766.334 chr3 120794850 120795468 + 2.66667 NA Intergenic MLT1I|LTR|ERVL-MaLR 41198 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 403.334-3 chr18 9612168 9612363 + 2.66667 NA intron (NM_001042388, intron 2 of 19) MIR|SINE|MIR 2294 NR_052003 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 745.5 chr12 57461218 57461662 + 2.66667 NA intron (NM_001160045, intron 1 of 9) intron (NM_001160045, intron 1 of 9) 1289 NM_001167609 2735 Hs.632702 NM_005269 ENSG00000111087 GLI1 GLI|PAPA8|PPD1 GLI family zinc finger 1 protein-coding 433-3 chr12 56127644 56128093 + 2.5 NA promoter-TSS (NM_015292) promoter-TSS (NM_015292) -334 NM_015292 23344 Hs.632729 NM_015292 ENSG00000139641 ESYT1 FAM62A|MBC2 extended synaptotagmin 1 protein-coding 701 chr11 75388611 75389194 + 2.5 NA Intergenic Intergenic -10589 NM_001260507 6188 Hs.546286 NM_001005 ENSG00000149273 RPS3 S3 ribosomal protein S3 protein-coding 344.5-16 chr7 148772736 148772960 + 2.5 NA intron (NM_001370660, intron 9 of 21) MER117|DNA|hAT-Charlie 73138 NM_001370664 8454 Hs.146806 NM_003592 ENSG00000055130 CUL1 - cullin 1 protein-coding 298.5-13 chr2 34012244 34012400 + 2.5 NA intron (NR_126403, intron 4 of 5) MIRb|SINE|MIR -54904 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 370.5-8 chr20 16420920 16421260 + 2.5 NA intron (NM_001199866, intron 15 of 22) intron (NM_001199866, intron 15 of 22) 152358 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 633.667-4 chr17 4566558 4567293 + 2.5 NA Intergenic LTR55|LTR|ERVL? -6348 NM_001288702 124975 Hs.130749 NM_153338 ENSG00000167741 GGT6 - gamma-glutamyltransferase 6 protein-coding 366-11 chr6 38575480 38576065 + 2.5 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 20295 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 287.834-2 chr17 82292875 82293076 + 2.5 NA promoter-TSS (NR_135639) promoter-TSS (NR_135639) -161 NR_135639 101929511 Hs.147682 NR_135639 ENSG00000265692 LINC01970 - long intergenic non-protein coding RNA 1970 ncRNA 410-14 chr6 46534714 46534904 + 2.5 NA Intergenic L1MB7|LINE|L1 -42742 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 237-34 chr5 178730738 178730877 + 2.5 NA promoter-TSS (NM_001324339) promoter-TSS (NM_001324339) -148 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 289-27 chrX 118601317 118601736 + 2.5 NA intron (NM_144658, intron 23 of 52) intron (NM_144658, intron 23 of 52) 105617 NM_144658 139818 Hs.368203 NM_144658 ENSG00000147251 DOCK11 ACG|ZIZ2|bB128O4.1 dedicator of cytokinesis 11 protein-coding 423.5-11 chr9 126500829 126501035 + 2.5 NA intron (NM_033446, intron 9 of 9) intron (NM_033446, intron 9 of 9) -90428 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-coding repressor of NFAT ncRNA 425.5-9 chr9 78993032 78993463 + 2.5 NA Intergenic Intergenic 152419 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 510.5-5 chr9 31140748 31141020 + 2.5 NA Intergenic Intergenic 240606 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 289.667-17 chr3 24237996 24238245 + 2.5 NA intron (NM_001354708, intron 2 of 9) intron (NM_001354708, intron 2 of 9) 86796 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 567.001 chr1 242528159 242528612 + 2.5 NA Intergenic Intergenic -3688 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 845 chr2 219689541 219690145 + 2.5 NA Intergenic Intergenic 62213 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 1012.5 chr1 30801468 30802338 + 2.5 NA Intergenic Intergenic -22749 NR_146732 105378622 Hs.209284 NR_146732 ENSG00000223382 LINC01778 - long intergenic non-protein coding RNA 1778 ncRNA 411.667 chr12 12737318 12737514 + 2.5 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) 11499 NM_001130415 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 311-9 chr2 68450361 68450504 + 2.5 NA Intergenic Intergenic 16862 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 243.833-22 chr8 60793608 60793747 + 2.5 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 52418 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 471.333-5 chr7 36206995 36207475 + 2.5 NA intron (NM_030636, intron 2 of 7) L2c|LINE|L2 53981 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 171.667-17 chr13 98466786 98466898 + 2.5 NA intron (NM_001032296, intron 5 of 10) intron (NM_001032296, intron 5 of 10) 55283 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 613.833 chr16 5633909 5634769 + 2.5 NA Intergenic Tigger8|DNA|TcMar-Tigger 1872 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 667.667-3 chr2 209577204 209577590 + 2.5 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -1939 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 309.5-14 chr4 55969550 55969684 + 2.5 NA intron (NM_025009, intron 9 of 25) L1MB7|LINE|L1 20672 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 726.834 chrX 109890729 109891468 + 2.5 NA Intergenic Intergenic 20697 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 365.333-2 chr1 108313026 108313211 + 2.5 NA Intergenic Intergenic -69037 NM_001143989 148545 Hs.511849 NM_152488 ENSG00000196427 NBPF4 - NBPF member 4 protein-coding 299.5-20 chr7 69790609 69790975 + 2.5 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 192317 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 718 chr11 58513681 58514417 + 2.5 NA Intergenic Intergenic -5944 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 700.167 chr1 116498718 116500018 + 2.5 NA Intergenic MARNA|DNA|TcMar-Mariner -20542 NR_125972 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 508.334-4 chr15 100626353 100627144 + 2.5 NA intron (NM_198243, intron 4 of 5) L1ME1|LINE|L1 24159 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 756.167 chr4 40924295 40925031 + 2.5 NA intron (NM_173075, intron 9 of 16) MLT1G1|LTR|ERVL-MaLR -67471 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 564.167 chr1 94801744 94802206 + 2.5 NA intron (NR_160783, intron 1 of 3) intron (NR_160783, intron 1 of 3) 18257 NR_160780 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 1103.17-2 chr2 28566402 28567470 + 2.5 NA intron (NR_138141, intron 1 of 35) CpG 579 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 458.167-3 chrX 70970524 70970745 + 2.5 NA Intergenic HAL1M8|LINE|L1 -39538 NM_001048164 84889 Hs.175220 NM_032803 ENSG00000165349 SLC7A3 ATRC3|CAT-3|CAT3 solute carrier family 7 member 3 protein-coding 373.333-12 chr7 11835226 11835450 + 2.5 NA Intergenic Intergenic -3140 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 212.5-6 chr1 233494413 233494551 + 2.5 NA Intergenic Intergenic -119624 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 341-3 chr11 112113223 112113449 + 2.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 26463 NR_077060 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 1147.5 chr14 47278158 47279233 + 2.5 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 64551 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 384.167-5 chr2 962692 962927 + 2.5 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -11417 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 379-9 chr5 43635897 43636202 + 2.5 NA intron (NM_012343, intron 7 of 21) MIRb|SINE|MIR -32819 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 698.667 chr10 16777398 16777876 + 2.5 NA intron (NM_152724, intron 2 of 7) intron (NM_152724, intron 2 of 7) 39787 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 334.5-19 chr7 81720203 81720524 + 2.5 NA intron (NM_001010932, intron 10 of 17) intron (NM_001010932, intron 10 of 17) -28957 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 641.667 chr4 142719884 142720409 + 2.5 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 126389 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 380.5-10 chr4 138007580 138007862 + 2.5 NA Intergenic Intergenic -81293 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 223.333-46 chr8 105980309 105980465 + 2.5 NA intron (NR_125797, intron 1 of 4) L1MA8|LINE|L1 80116 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 445.833 chr14 22887033 22887513 + 2.5 NA 3' UTR (NM_173527, exon 5 of 5) 3' UTR (NM_173527, exon 5 of 5) 4051 NM_173527 161253 Hs.444911 NM_173527 ENSG00000139890 REM2 - RRAD and GEM like GTPase 2 protein-coding 782.666-2 chr6 36885516 36886163 + 2.5 NA promoter-TSS (NM_001286637) promoter-TSS (NM_001286637) -113 NM_001286635 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 584.5-2 chr8 54442737 54443227 + 2.5 NA Intergenic Intergenic -14953 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 563.333-4 chr5 52654487 52654860 + 2.5 NA Intergenic Intergenic -133243 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 395.5-2 chr20 52974614 52974782 + 2.5 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 2340 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 464.999 chr11 126061799 126062118 + 2.5 NA intron (NM_016952, intron 1 of 19) UCON89|DNA|hAT? 1334 NM_016952 50937 Hs.38034 NM_016952 ENSG00000064309 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 554.834-3 chr6 154928247 154928759 + 2.5 NA Intergenic Intergenic 75143 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 325.666-4 chr19 31196141 31196354 + 2.5 NA intron (NR_147209, intron 3 of 4) L1MC1|LINE|L1 28737 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 200.5-41 chr8 98170444 98170569 + 2.5 NA Intergenic Intergenic 52666 NM_015029 10940 Hs.252828 NM_015029 ENSG00000104356 POP1 ANXD2 POP1 homolog, ribonuclease P/MRP subunit protein-coding 1137.5-3 chr2 210577265 210578161 + 2.5 NA intron (NR_161225, intron 5 of 38) intron (NR_161225, intron 5 of 38) -15642 NR_163592 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 344.5-7 chr16 3755758 3756011 + 2.5 NA intron (NM_004380, intron 19 of 30) intron (NM_004380, intron 19 of 30) -38360 NM_016292 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 1093.33 chr5 67245801 67246512 + 2.5 NA Intergenic Intergenic -49357 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 527.167-2 chr13 110114621 110114915 + 2.5 NA Intergenic Intergenic -6934 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 203.667-61 chrX 23008523 23008620 + 2.5 NA intron (NR_073010, intron 3 of 11) MER20|DNA|hAT-Charlie 8611 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 764.667 chr14 21987830 21988366 + 2.5 NA Intergenic Intergenic -317081 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 204.833-30 chr9 137423196 137423348 + 2.5 NA promoter-TSS (NM_017820) promoter-TSS (NM_017820) -10 NR_104599 54932 Hs.495553 NM_017820 ENSG00000187609 EXD3 mut-7 exonuclease 3'-5' domain containing 3 protein-coding 623.5-2 chr8 142545294 142545733 + 2.5 NA TTS (NM_001702) TTS (NM_001702) 68966 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 610.5 chr13 46973855 46974136 + 2.5 NA Intergenic L1MB1|LINE|L1 -76919 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 489.833 chr10 81920020 81920962 + 2.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 42804 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 548-3 chr20 36011731 36012064 + 2.5 NA intron (NR_130714, intron 8 of 8) L1MC3|LINE|L1 39063 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 NORAD LINC00657 non-coding RNA activated by DNA damage ncRNA 300.333-9 chr4 151761013 151761187 + 2.5 NA promoter-TSS (NM_004564) promoter-TSS (NM_004564) -77 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 381.5-11 chr8 86090286 86090921 + 2.5 NA Intergenic L1MA9|LINE|L1 -8307 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 523.999 chr10 62363997 62364343 + 2.5 NA intron (NR_104162, intron 1 of 3) L1ME3A|LINE|L1 -9987 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 718.001 chr13 26985126 26985701 + 2.5 NA Intergenic Intergenic -140120 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 617.001 chr7 50696672 50697269 + 2.5 NA intron (NM_001371009, intron 2 of 15) L1MB4|LINE|L1 8331 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 1267-2 chr4 93791147 93792040 + 2.5 NA Intergenic Intergenic -37160 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 516-5 chr3 106015507 106015983 + 2.5 NA Intergenic L1ME1|LINE|L1 -146344 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 561-2 chr17 29148756 29149275 + 2.5 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) -8626 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 776-2 chr5 148965580 148966300 + 2.5 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? 96469 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 345.333-6 chr2 95563321 95563720 + 2.5 NA Intergenic Intergenic -28481 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 291.667-4 chr14 22359180 22359333 + 2.5 NA Intergenic L1P4a|LINE|L1 73497 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 677.5 chr11 16785267 16785925 + 2.5 NA intron (NM_001329630, intron 24 of 26) intron (NM_001329630, intron 24 of 26) 46949 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 634-3 chr2 84143972 84144444 + 2.5 NA Intergenic MER49|LTR|ERV1 -146474 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 274.5-15 chr3 94336203 94336585 + 2.5 NA Intergenic (AG)n|Simple_repeat|Simple_repeat 273333 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 428.333-5 chr7 120791974 120792386 + 2.5 NA intron (NM_012338, intron 7 of 7) L1M4|LINE|L1 65964 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 1069.5-3 chr6 69835446 69836182 + 2.5 NA Intergenic Intergenic -30742 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 391.333-4 chr3 190076874 190077235 + 2.5 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 43843 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 281.667-26 chr8 136651582 136651727 + 2.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 120856 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1061.67-3 chr19 36054093 36055296 + 2.5 NA promoter-TSS (NM_173636) promoter-TSS (NM_173636) 68 NM_001331102 199745 Hs.350209 NM_152658 ENSG00000161277 THAP8 - THAP domain containing 8 protein-coding 453.499 chr1 154983071 154983582 + 2.5 NA promoter-TSS (NM_001184892) promoter-TSS (NM_001184892) -18 NM_001184891 80308 Hs.118666 NM_025207 ENSG00000160688 FLAD1 FAD1|FADS|LSMFLAD|PP591 flavin adenine dinucleotide synthetase 1 protein-coding 596.667 chr12 968729 969414 + 2.5 NA intron (NM_001297419, intron 1 of 11) MER2|DNA|TcMar-Tigger -19349 NR_123713 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 596.833-2 chr8 121640621 121641099 + 2.5 NA 5' UTR (NM_005328, exon 1 of 4) 5' UTR (NM_005328, exon 1 of 4) 580 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 766.833-3 chr3 167350136 167350584 + 2.5 NA intron (NM_001199202, intron 9 of 20) intron (NM_001199202, intron 9 of 20) 29923 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 501.999 chr22 32796958 32797556 + 2.5 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -3559 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 402.5-4 chr2 107960584 107960819 + 2.5 NA Intergenic Intergenic -25823 NM_001305007 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 175.167-6 chr11 68257495 68257613 + 2.5 NA Intergenic Intergenic 14419 NM_001300913 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 306.334-3 chr10 32210529 32211024 + 2.5 NA Intergenic FRAM|SINE|Alu 136382 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 649.333-2 chr7 36856518 36856809 + 2.5 NA intron (NM_001206480, intron 21 of 21) intron (NM_001206480, intron 21 of 21) 62769 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 466 chr1 101541913 101542127 + 2.5 NA Intergenic Intergenic 218183 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 309.5-4 chr16 61277672 61277879 + 2.5 NA Intergenic Intergenic -222009 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 416.834-3 chr5 52560392 52560654 + 2.5 NA Intergenic Intergenic -227393 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 675.5 chr11 119474835 119475631 + 2.5 NA intron (NR_034160, intron 3 of 3) intron (NR_034160, intron 3 of 3) -50248 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 520.834 chr4 122576785 122577339 + 2.5 NA Intergenic Intergenic -41921 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 690.834 chr1 53878194 53878669 + 2.5 NA intron (NR_036639, intron 5 of 11) intron (NR_036639, intron 5 of 11) 11366 NR_036639 54432 Hs.11923 NM_018982 ENSG00000058799 YIPF1 DJ167A19.1|FinGER1 Yip1 domain family member 1 protein-coding 434.5-3 chr5 13093212 13093550 + 2.5 NA Intergenic L1MA6|LINE|L1 -60495 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 856.333 chr14 42224250 42224715 + 2.5 NA Intergenic Intergenic 617626 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 495 chr10 52567079 52567552 + 2.5 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -96782 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 430.834-4 chr20 5731479 5731700 + 2.5 NA Intergenic MLT1O|LTR|ERVL-MaLR -18798 NM_001303478 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 244-34 chr7 74067959 74068251 + 2.5 NA intron (NM_001278915, intron 32 of 32) intron (NM_001278915, intron 32 of 32) -15699 NM_002314 3984 Hs.647035 NM_002314 ENSG00000106683 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 612.5-3 chr17 53107582 53107985 + 2.5 NA Intergenic MIR1_Amn|SINE|MIR 122278 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 515.167-2 chr18 76349303 76349655 + 2.5 NA Intergenic Intergenic 139969 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 642.166-2 chr15 47981679 47982109 + 2.5 NA Intergenic L3|LINE|CR1 -135658 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 483-2 chr1 118038480 118038723 + 2.5 NA intron (NM_206996, intron 23 of 48) L1MC1|LINE|L1 108862 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 184.5-13 chr11 29821066 29821202 + 2.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR 161259 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 1092.5 chr2 11829428 11830441 + 2.5 NA Intergenic Intergenic 7052 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 240.333-12 chr2 176935993 176936108 + 2.5 NA Intergenic Intergenic 276361 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 521.333-6 chr6 160455847 160456163 + 2.5 NA Intergenic Intergenic 55119 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 609 chr10 98748198 98748794 + 2.5 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 176072 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 419.834-2 chr8 20133458 20133896 + 2.5 NA Intergenic THE1D|LTR|ERVL-MaLR 49459 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 425-5 chr13 109355077 109355562 + 2.5 NA Intergenic Intergenic -45377 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 438.5-6 chr5 99589416 99589636 + 2.5 NA Intergenic Intergenic 55536 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 423.166 chr14 102377225 102377519 + 2.5 NA intron (NM_014844, intron 2 of 19) AluJo|SINE|Alu 14431 NM_001172631 9895 Hs.195667 NM_014844 ENSG00000196663 TECPR2 KIAA0329|SPG49 tectonin beta-propeller repeat containing 2 protein-coding 459.833-2 chr1 171565628 171565906 + 2.5 NA intron (NM_015172, intron 20 of 33) intron (NM_015172, intron 20 of 33) -53996 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 605.834-2 chr4 145840314 145840686 + 2.5 NA intron (NM_178835, intron 7 of 14) intron (NM_178835, intron 7 of 14) 98323 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 1293.16 chr13 46893658 46894612 + 2.5 NA intron (NM_001165947, intron 1 of 2) intron (NM_001165947, intron 1 of 2) 2941 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 646.5-4 chr2 151409876 151410158 + 2.5 NA 5' UTR (NM_001177663, exon 1 of 35) 5' UTR (NM_001177663, exon 1 of 35) 115 NM_001177663 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 495.333-3 chr6 45370949 45371204 + 2.5 NA intron (NM_181356, intron 1 of 12) intron (NM_181356, intron 1 of 12) 6442 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 329.167-8 chr14 21933642 21933952 + 2.5 NA Intergenic Intergenic -262780 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 318.5-13 chr7 19368958 19369134 + 2.5 NA Intergenic Intergenic -223625 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 588.333-2 chr4 17548969 17549489 + 2.5 NA Intergenic Intergenic -28075 NM_015907 51056 Hs.570791 NM_015907 ENSG00000002549 LAP3 HEL-S-106|LAP|LAPEP|PEPS leucine aminopeptidase 3 protein-coding 426.334-2 chr4 78660297 78660658 + 2.5 NA intron (NR_038306, intron 2 of 2) intron (NR_038306, intron 2 of 2) 14483 NR_038307 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 789.167-2 chr10 21993362 21994014 + 2.5 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 10042 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 1149 chr1 113978799 113979575 + 2.5 NA promoter-TSS (NM_001286353) promoter-TSS (NM_001286353) -204 NM_001286353 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 585.501 chr19 49717238 49718006 + 2.5 NA Intergenic LTR50|LTR|ERVL 26506 NR_108072 126129 Hs.112195 NM_152359 ENSG00000169169 CPT1C CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73 carnitine palmitoyltransferase 1C protein-coding 536.333-4 chr9 116149716 116149968 + 2.5 NA Intergenic Intergenic -3949 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 179-33 chr5 149371505 149371596 + 2.5 NA Intergenic Intergenic 7742 NM_014443 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 223.167-5 chr13 27362106 27362218 + 2.5 NA Intergenic Intergenic -62457 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 630.833-5 chr5 26329498 26330138 + 2.5 NA Intergenic Intergenic 708768 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 256.833-17 chr8 6885695 6885807 + 2.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -7815 NM_005218 1672 Hs.32949 NM_005218 ENSG00000164825 DEFB1 BD1|DEFB-1|DEFB101|HBD1 defensin beta 1 protein-coding 1412.5 chr4 112938394 112939308 + 2.5 NA intron (NM_001354275, intron 2 of 43) L2a|LINE|L2 77864 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 547.167 chr18 58529683 58529919 + 2.5 NA intron (NM_052947, intron 5 of 12) intron (NM_052947, intron 5 of 12) -70819 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 612.999 chr13 39244017 39244439 + 2.5 NA Intergenic Intergenic 205772 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 452.5-2 chr19 49328121 49328332 + 2.5 NA Intergenic THE1D|LTR|ERVL-MaLR -3035 NM_014037 28968 Hs.130949 NM_014037 ENSG00000063127 SLC6A16 NT5|NTT5 solute carrier family 6 member 16 protein-coding 169.333-33 chr2 111633997 111634410 + 2.5 NA Intergenic MSTD|LTR|ERVL-MaLR 136931 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 833.834 chr1 111399803 111400632 + 2.5 NA Intergenic Intergenic -10366 NR_029429 441897 Hs.568387 NR_029429 ENSG00000227179 PGCP1 - progastricsin pseudogene 1 pseudo 592.167 chr12 8949722 8950230 + 2.5 NA promoter-TSS (NM_001207024) promoter-TSS (NM_001207024) -68 NM_001329103 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 594.333-2 chr8 8669695 8670260 + 2.5 NA Intergenic AluSz|SINE|Alu -31960 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 550-6 chr4 83158262 83158566 + 2.5 NA Intergenic Intergenic -43685 NM_016619 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 509-3 chr18 26307154 26307618 + 2.5 NA intron (NR_121653, intron 10 of 15) intron (NR_121653, intron 10 of 15) 80941 NM_005640 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 557-2 chr1 58683265 58683528 + 2.5 NA intron (NM_001085487, intron 7 of 19) intron (NM_001085487, intron 7 of 19) 16666 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 746.332 chr20 50179151 50179829 + 2.5 NA Intergenic Intergenic 6920 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 295-17 chr4 47033390 47033598 + 2.5 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 1927 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 641 chr10 102834858 102835159 + 2.5 NA exon (NM_000102, exon 3 of 8) exon (NM_000102, exon 3 of 8) 2405 NM_000102 1586 Hs.438016 NM_000102 ENSG00000148795 CYP17A1 CPT7|CYP17|P450C17|S17AH cytochrome P450 family 17 subfamily A member 1 protein-coding 1057.33-2 chr9 117782885 117783702 + 2.5 NA Intergenic Intergenic 78890 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 637.5-2 chr7 120554932 120555426 + 2.5 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 282004 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 473.333-3 chr17 28426363 28426633 + 2.5 NA Intergenic Intergenic -20286 NM_001242366 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 269.167-5 chr15 39750873 39751084 + 2.5 NA intron (NM_152597, intron 5 of 11) L1MA9|LINE|L1 31863 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 664.166 chr12 121681848 121682631 + 2.5 NA Intergenic Intergenic -9595 NM_001363685 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 577.5-5 chr7 83974972 83975457 + 2.5 NA intron (NM_006080, intron 15 of 16) intron (NM_006080, intron 15 of 16) 219575 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 417-6 chr5 181186830 181187064 + 2.5 NA Intergenic L1ME3|LINE|L1 4961 NR_108031 102577426 Hs.277359 NR_108031 ENSG00000248473 LINC01962 - long intergenic non-protein coding RNA 1962 ncRNA 678.834 chr12 30286467 30286879 + 2.5 NA Intergenic L1MB7|LINE|L1 390571 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 634.167 chr2 233028827 233029620 + 2.5 NA Intergenic AluY|SINE|Alu -3449 NM_005383 4759 Hs.532681 NM_005383 ENSG00000115488 NEU2 SIAL2 neuraminidase 2 protein-coding 776.167 chr17 48878854 48879396 + 2.5 NA intron (NR_135674, intron 3 of 3) intron (NR_135674, intron 3 of 3) -13662 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5MC1 ATP5A|ATP5G|ATP5G1 ATP synthase membrane subunit c locus 1 protein-coding 437-7 chr3 63099781 63100115 + 2.5 NA Intergenic Intergenic -2740 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 845-3 chr9 73683763 73684411 + 2.5 NA Intergenic L1M1|LINE|L1 532222 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 239.833-11 chr4 146624749 146624969 + 2.5 NA Intergenic Intergenic -14034 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 636.999 chr11 110433927 110434329 + 2.5 NA intron (NM_004109, intron 1 of 3) intron (NM_004109, intron 1 of 3) 4180 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 207.833-6 chr12 69021838 69021949 + 2.5 NA Intergenic FAM|SINE|Alu -58653 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 491.167 chr2 210617675 210618288 + 2.5 NA non-coding (NR_002763, exon 1 of 1) non-coding (NR_002763, exon 1 of 1) 410 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 488-5 chr5 50912665 50912904 + 2.5 NA Intergenic MSTB|LTR|ERVL-MaLR 57403 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 330-18 chr5 136434871 136435115 + 2.5 NA Intergenic L1ME2|LINE|L1 -69517 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 905.5 chr20 62302440 62302994 + 2.5 NA promoter-TSS (NM_175573) promoter-TSS (NM_175573) -179 NM_001281438 11047 Hs.90107 NM_007002 ENSG00000130706 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 553-8 chr5 157142748 157143258 + 2.5 NA promoter-TSS (NM_004270) promoter-TSS (NM_004270) -138 NM_004270 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 333.167-4 chr5 37640373 37640533 + 2.5 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 194369 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 180.167-20 chr6 17156199 17156350 + 2.5 NA Intergenic Intergenic 54016 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 966.166 chr2 157193399 157194751 + 2.5 NA Intergenic Intergenic -63630 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 817.167-2 chr6 142155749 142156600 + 2.5 NA intron (NM_001286372, intron 1 of 5) MIRc|SINE|MIR 8911 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 309.5-8 chr2 103751092 103751251 + 2.5 NA Intergenic L2a|LINE|L2 657161 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 590.834-2 chr19 56309419 56309939 + 2.5 NA intron (NM_001354658, intron 10 of 10) intron (NM_001354658, intron 10 of 10) 4885 NM_001322067 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 437.5-5 chr3 170884808 170885008 + 2.5 NA Intergenic L1M5|LINE|L1 -14713 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 455.834 chr17 71029893 71030190 + 2.5 NA Intergenic L1MC3|LINE|L1 172138 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 200-20 chr19 35088671 35088803 + 2.5 NA intron (NR_024561, intron 1 of 3) intron (NR_024561, intron 1 of 3) 17534 NR_024561 100128675 Hs.633989 NR_024561 ENSG00000227392 HPN-AS1 - HPN antisense RNA 1 ncRNA 464.333-2 chr14 59926275 59926615 + 2.5 NA intron (NR_075071, intron 1 of 32) intron (NR_075071, intron 1 of 32) 6732 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 399.333-4 chr11 34956798 34956971 + 2.5 NA intron (NM_001166158, intron 3 of 5) intron (NM_001166158, intron 3 of 5) 15047 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 524.501 chr4 15457788 15458145 + 2.5 NA Intergenic MIR3|SINE|MIR -11899 NM_020785 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 493.667-6 chr8 113466371 113466855 + 2.5 NA Intergenic Intergenic -29674 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 517-2 chr5 8818387 8818698 + 2.5 NA Intergenic L1MC1|LINE|L1 -21190 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 679.833-3 chr7 30219066 30219539 + 2.5 NA Intergenic L1MC1|LINE|L1 -65295 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 394-13 chr6 54191724 54191907 + 2.5 NA intron (NM_001281746, intron 10 of 11) intron (NM_001281746, intron 10 of 11) 80372 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 864.667 chr4 151362598 151363214 + 2.5 NA Intergenic Intergenic -46270 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 430.167-2 chr3 98982754 98983052 + 2.5 NA Intergenic Intergenic -81208 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 539-3 chr8 103705646 103706030 + 2.5 NA intron (NM_001348497, intron 2 of 22) L1MA4|LINE|L1 -113382 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 616.5-2 chr12 122399381 122399964 + 2.5 NA non-coding (NR_045382, exon 3 of 3) non-coding (NR_045382, exon 3 of 3) 4130 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 729.167 chr12 121624549 121625167 + 2.5 NA Intergenic Intergenic -1692 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 436.667-9 chr8 123764208 123764399 + 2.5 NA Intergenic MER102c|DNA|hAT-Charlie -4136 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 435.001-6 chr6 124714709 124715029 + 2.5 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -247676 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 1035.17 chr14 36524979 36525920 + 2.5 NA Intergenic Intergenic -5217 NM_001079668 7080 Hs.94367 NM_003317 ENSG00000136352 NKX2-1 BCH|BHC|NK-2|NKX2.1|NKX2A|NMTC1|T/EBP|TEBP|TITF1|TTF-1|TTF1 NK2 homeobox 1 protein-coding 360.167-8 chr4 118281075 118281416 + 2.5 NA 3' UTR (NM_003619, exon 13 of 13) 3' UTR (NM_003619, exon 13 of 13) 2055 NR_002963 677809 Hs.744742 NR_002963 ENSG00000275994 SNORA24 ACA24|SNORA24A small nucleolar RNA, H/ACA box 24 snoRNA 664.834 chr1 53393113 53393748 + 2.5 NA Intergenic Intergenic 46590 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 244.333-28 chr5 142548872 142549050 + 2.5 NA Intergenic Intergenic 72373 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 1253.5 chr1 88655247 88656530 + 2.5 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -28256 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 425.833 chr11 115989166 115989376 + 2.5 NA Intergenic Intergenic -229071 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 507 chr1 108049512 108049937 + 2.5 NA Intergenic (CAG)n|Simple_repeat|Simple_repeat -84544 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 492.334-3 chr6 40841731 40841968 + 2.5 NA Intergenic L1MDa|LINE|L1 181431 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 513.833-3 chr21 44949374 44949915 + 2.5 NA intron (NM_001316986, intron 2 of 4) MER52D|LTR|ERV1 9615 NM_058190 85395 Hs.410830 NM_058190 ENSG00000160256 FAM207A C21orf70|PRED56 family with sequence similarity 207 member A protein-coding 249.834 chr1 48680567 48681054 + 2.5 NA intron (NM_001323575, intron 6 of 12) intron (NM_001323575, intron 6 of 12) 96081 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 816.667-2 chr3 159987125 159987774 + 2.5 NA intron (NR_108088, intron 9 of 9) intron (NR_108088, intron 9 of 9) -1386 NM_000882 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 509.5-3 chr3 113182023 113182409 + 2.5 NA Intergenic L1ME4a|LINE|L1 -14485 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 411.333-7 chr2 143171734 143172068 + 2.5 NA intron (NM_018460, intron 2 of 13) intron (NM_018460, intron 2 of 13) 42482 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 382.5-3 chr12 6402922 6403228 + 2.5 NA Intergenic L1ME3|LINE|L1 18913 NM_002342 4055 Hs.1116 NM_002342 ENSG00000111321 LTBR D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 lymphotoxin beta receptor protein-coding 734.667 chr14 76870087 76870793 + 2.5 NA TTS (NM_194287) TTS (NM_194287) 44032 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 553.834 chr3 38167621 38168207 + 2.5 NA intron (NM_005109, intron 1 of 17) intron (NM_005109, intron 1 of 17) 2377 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 600.5-2 chr2 186862472 186862970 + 2.5 NA Intergenic Intergenic -13551 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 530.667-2 chr14 49876647 49877036 + 2.5 NA Intergenic AluJo|SINE|Alu -13992 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 430.5 chr10 101444059 101444675 + 2.5 NA intron (NM_001256856, intron 2 of 13) intron (NM_001256856, intron 2 of 13) 90202 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 955.333 chr1 202719314 202720065 + 2.5 NA Intergenic Intergenic -9235 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 368.333-9 chr8 79652645 79653130 + 2.5 NA intron (NM_007029, intron 3 of 4) intron (NM_007029, intron 3 of 4) 41770 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 520-2 chr9 79020749 79021102 + 2.5 NA Intergenic Intergenic 124741 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 282.833-11 chr3 159872236 159872603 + 2.5 NA intron (NM_001197113, intron 6 of 10) intron (NM_001197113, intron 6 of 10) 32558 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 537.167 chr12 56594218 56594562 + 2.5 NA 3' UTR (NM_002898, exon 14 of 14) 3' UTR (NM_002898, exon 14 of 14) 35936 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 399.167-5 chr3 104186045 104186352 + 2.5 NA Intergenic Intergenic -662082 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 735.833-2 chr12 56463898 56464845 + 2.5 NA Intergenic Intergenic -4207 NM_207344 283377 Hs.128676 NM_207344 ENSG00000176422 SPRYD4 - SPRY domain containing 4 protein-coding 489.501 chr6 70310216 70310478 + 2.5 NA Intergenic Intergenic -7263 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 485.167-5 chr4 33934030 33934467 + 2.5 NA intron (NR_125902, intron 4 of 4) L2a|LINE|L2 105645 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 631.167-2 chr4 92807392 92807735 + 2.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 503164 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 594.167-2 chr5 126808836 126809477 + 2.5 NA intron (NR_134488, intron 3 of 11) AluSx1|SINE|Alu 32020 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 454.666-3 chr6 36782978 36783263 + 2.5 NA intron (NM_020939, intron 8 of 20) MADE2|DNA|TcMar-Mariner -25711 NM_001314018 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 896.501-2 chr12 96986352 96987091 + 2.5 NA Intergenic Intergenic 79255 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 444.833-2 chr13 112510174 112510451 + 2.5 NA intron (NM_006322, intron 17 of 21) intron (NM_006322, intron 17 of 21) 77841 NM_001286277 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 303.833-12 chr6 144013476 144013853 + 2.5 NA intron (NM_001289040, intron 1 of 5) MLT1D|LTR|ERVL-MaLR -4934 NR_002768 57061 Hs.657760 NR_002768 ENSG00000283122 HYMAI NCRNA00020 hydatidiform mole associated and imprinted ncRNA 490.167 chr5 99169036 99169440 + 2.5 NA Intergenic Intergenic -239524 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 632.001-2 chr5 153148258 153148795 + 2.5 NA Intergenic L1PA16|LINE|L1 -176177 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 363.167-2 chr17 67073397 67073676 + 2.5 NA 3' UTR (NM_014877, exon 33 of 33) 3' UTR (NM_014877, exon 33 of 33) 28982 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 528.666-2 chr15 97245634 97245995 + 2.5 NA Intergenic L1MA6|LINE|L1 275997 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 384.334-4 chr5 43625845 43626131 + 2.5 NA intron (NM_012343, intron 6 of 21) L1ME4a|LINE|L1 -22758 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 415-2 chr15 41116226 41116830 + 2.5 NA promoter-TSS (NR_104038) promoter-TSS (NR_104038) -248 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 190.333-5 chr10 34666440 34666533 + 2.5 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 148810 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 628.667 chr17 60909300 60909739 + 2.5 NA intron (NM_001330413, intron 11 of 25) intron (NM_001330413, intron 11 of 25) 231668 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 380.5-3 chr10 117907308 117907492 + 2.5 NA Intergenic Intergenic -139421 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 459.5-2 chr10 89278518 89278923 + 2.5 NA Intergenic Intergenic -23326 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 171-28 chr2 29931362 29931492 + 2.5 NA Intergenic L1ME4a|LINE|L1 -9841 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 377.833-5 chr7 94657859 94658170 + 2.5 NA intron (NM_001172437, intron 1 of 1) intron (NM_001172437, intron 1 of 1) 1644 NM_001184962 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 539 chr11 72440208 72440545 + 2.5 NA Intergenic AluJr|SINE|Alu -5692 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 274.834-7 chr6 111210264 111210710 + 2.5 NA intron (NM_018593, intron 4 of 5) intron (NM_018593, intron 4 of 5) -48852 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 536.667 chr22 26751591 26751847 + 2.5 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 78876 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 880.5 chr20 59242623 59243413 + 2.5 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 51998 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 703.833 chr19 56538351 56538760 + 2.5 NA promoter-TSS (NM_020828) promoter-TSS (NM_020828) -393 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 861.833 chr3 118628516 118629269 + 2.5 NA intron (NR_135547, intron 2 of 3) intron (NR_135547, intron 2 of 3) -12876 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 504.667 chr12 69639583 69639863 + 2.5 NA Intergenic Intergenic -28816 NM_201550 376132 Hs.448708 NM_201550 ENSG00000198812 LRRC10 HRLRRP|LRRC10A leucine rich repeat containing 10 protein-coding 586.666-2 chr7 1571071 1571616 + 2.5 NA intron (NR_021487, intron 1 of 5) MER51B|LTR|ERV1 1270 NR_021487 114796 Hs.436146 NR_021487 ENSG00000230487 PSMG3-AS1 - PSMG3 antisense RNA 1 (head to head) ncRNA 1008.67-2 chr16 87278536 87279342 + 2.5 NA intron (NR_104667, intron 3 of 4) intron (NR_104667, intron 3 of 4) 13513 NR_104667 101928682 Hs.149004 NR_104667 ENSG00000261697 LOC101928682 - uncharacterized LOC101928682 ncRNA 518.5-4 chr7 100586168 100586646 + 2.5 NA promoter-TSS (NM_002319) promoter-TSS (NM_002319) 79 NM_033506 26261 Hs.283764 NM_012172 ENSG00000106336 FBXO24 FBX24 F-box protein 24 protein-coding 221.333-23 chr5 73497089 73497218 + 2.5 NA Intergenic Intergenic -1272 NM_001207 689 Hs.591768 NM_001207 ENSG00000145741 BTF3 BETA-NAC|BTF3a|BTF3b|NACB basic transcription factor 3 protein-coding 536.666 chr1 7208119 7208578 + 2.5 NA intron (NM_001349608, intron 3 of 21) intron (NM_001349608, intron 3 of 21) 181406 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 375.667-7 chr15 84588103 84588418 + 2.5 NA Intergenic Intergenic -12749 NM_017894 54993 Hs.594023 NM_017894 ENSG00000176371 ZSCAN2 ZFP29|ZNF854 zinc finger and SCAN domain containing 2 protein-coding 295.833-9 chr8 28730915 28731137 + 2.5 NA intron (NM_001440, intron 3 of 6) intron (NM_001440, intron 3 of 6) 29525 NR_073469 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 272.167-14 chr20 9978326 9978593 + 2.5 NA Intergenic Intergenic -7874 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 611.833 chr1 15142093 15142450 + 2.5 NA intron (NR_027136, intron 1 of 4) intron (NR_027136, intron 1 of 4) 10193 NR_027136 200197 Hs.531424 NM_182534 ENSG00000175147 TMEM51-AS1 C1orf126 TMEM51 antisense RNA 1 ncRNA 388.5-3 chr18 12327855 12328034 + 2.5 NA TTS (NM_006796) TTS (NM_006796) 19703 NM_001303526 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 398.167-4 chr22 25880766 25881036 + 2.5 NA intron (NM_001318245, intron 25 of 43) L2a|LINE|L2 138713 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 523.167-5 chr3 10344143 10344672 + 2.5 NA intron (NM_001001331, intron 18 of 22) intron (NM_001001331, intron 18 of 22) 14178 NR_036084 100422933 NR_036084 ENSG00000264534 MIR378B - microRNA 378b ncRNA 319.333-7 chr17 51371619 51371910 + 2.5 NA Intergenic Intergenic 35049 NR_122104 440446 Hs.626751 NR_122104 ENSG00000267452 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 418.834 chr14 51229744 51230031 + 2.5 NA Intergenic L1ME4c|LINE|L1 -10360 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 188.5-15 chr13 32564771 32564872 + 2.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -21631 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 478.5-2 chr11 55726645 55726890 + 2.5 NA Intergenic Intergenic -46671 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 371-2 chr10 30909257 30909468 + 2.5 NA intron (NR_026560, intron 2 of 6) intron (NR_026560, intron 2 of 6) 90155 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 1004.17 chr22 22942572 22943361 + 2.5 NA Intergenic Intergenic 55150 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 359.5-5 chr2 79232405 79232627 + 2.5 NA Intergenic L1PA16|LINE|L1 -72763 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 464.5-4 chr11 111179776 111180265 + 2.5 NA Intergenic Intergenic -65705 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 309-3 chr1 163616329 163616510 + 2.5 NA Intergenic Intergenic -193228 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 627-3 chr3 11238584 11238968 + 2.5 NA intron (NM_001098211, intron 1 of 1) L1MB7|LINE|L1 12795 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 463.5-2 chr3 69411508 69411847 + 2.5 NA Intergenic Intergenic -25589 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 1006.33-2 chr4 94406637 94407437 + 2.5 NA Intergenic Intergenic -44820 NM_001011516 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 1066-2 chr6 47780697 47781964 + 2.5 NA promoter-TSS (NM_181744) promoter-TSS (NM_181744) -709 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 789.834-2 chr4 85084097 85084556 + 2.5 NA Intergenic Intergenic 116842 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 290.334-3 chr10 58029832 58030003 + 2.5 NA Intergenic Intergenic 237977 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 291.5 chr1 39128021 39128219 + 2.5 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 43953 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 521.333-7 chr9 121322358 121322781 + 2.5 NA intron (NM_000177, intron 10 of 16) L1MC5a|LINE|L1 22738 NM_000177 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 189.167-36 chr8 127038753 127038841 + 2.5 NA Intergenic L2b|LINE|L2 25643 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 1068.67 chr3 36992876 36993997 + 2.5 NA promoter-TSS (NM_000249) promoter-TSS (NM_000249) 86 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 375.5-3 chr20 51228599 51228941 + 2.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -205663 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 406.5-7 chr6 116096915 116097325 + 2.5 NA Intergenic Intergenic -3733 NM_152729 221294 Hs.520341 NM_152729 ENSG00000178425 NT5DC1 C6orf200|LP2642|NT5C2L1 5'-nucleotidase domain containing 1 protein-coding 282.5-4 chr11 37409581 37409746 + 2.5 NA Intergenic L1MB7|LINE|L1 -528938 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 911.167-2 chr20 4740759 4741389 + 2.5 NA promoter-TSS (NR_024267) promoter-TSS (NR_024267) -406 NR_024267 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 355-8 chr20 38853544 38853738 + 2.5 NA intron (NM_015568, intron 2 of 10) MLT1H2|LTR|ERVL-MaLR 47944 NM_015568 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 241.667-23 chr4 115098488 115098602 + 2.5 NA intron (NM_022569, intron 1 of 13) L1MC1|LINE|L1 15075 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 1131.17 chr3 101808855 101809728 + 2.5 NA intron (NM_001348997, intron 6 of 6) intron (NM_001348997, intron 6 of 6) -18699 NM_001005474 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 242.333-26 chr8 9749179 9749330 + 2.5 NA intron (NM_003747, intron 18 of 26) intron (NM_003747, intron 18 of 26) 7582 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 275.667-21 chr5 178153896 178154102 + 2.5 NA promoter-TSS (NM_001034833) promoter-TSS (NM_001034833) -39 NM_017838 55651 Hs.744074 NM_017838 ENSG00000145912 NHP2 DKCB2|NHP2P|NOLA2 NHP2 ribonucleoprotein protein-coding 536.166-2 chr15 89773241 89773674 + 2.5 NA Intergenic AluJo|SINE|Alu -2875 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 431.5-2 chr12 25106118 25106489 + 2.5 NA intron (NM_001366547, intron 21 of 22) (TA)n|Simple_repeat|Simple_repeat 53597 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 355 chr1 16078683 16079081 + 2.5 NA Intergenic Intergenic -5231 NM_182623 348487 Hs.126825 NM_182623 ENSG00000185519 FAM131C C1orf117 family with sequence similarity 131 member C protein-coding 213-13 chr11 107689744 107690022 + 2.5 NA Intergenic Intergenic 22173 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 558.167-2 chr2 213153317 213153883 + 2.5 NA Intergenic Intergenic -1144 NM_001371277 399.833-6 chr8 121603536 121603738 + 2.5 NA Intergenic Intergenic -35709 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 418-6 chr20 47601973 47602158 + 2.5 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 100178 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 534.167-5 chr5 159135623 159136035 + 2.5 NA Intergenic Intergenic 35346 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 222.333-16 chr2 74261659 74261775 + 2.5 NA intron (NM_133478, intron 11 of 30) intron (NM_133478, intron 11 of 30) 53308 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 302.833-7 chr2 112685265 112685545 + 2.5 NA Intergenic Intergenic -36081 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 413.333-12 chr6 137945154 137945352 + 2.5 NA intron (NR_149097, intron 1 of 1) intron (NR_149097, intron 1 of 1) 547 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 679.833-2 chr6 121305930 121306742 + 2.5 NA intron (NR_104452, intron 5 of 35) intron (NR_104452, intron 5 of 35) 28144 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 292-23 chr6 151763179 151763552 + 2.5 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) -42308 NM_001291241 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 518.5 chr1 152346578 152346888 + 2.5 NA intron (NR_103779, intron 2 of 2) intron (NR_103779, intron 2 of 2) 9665 NR_103779 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 420-3 chr12 108742681 108742871 + 2.5 NA Intergenic L1MDa|LINE|L1 -11226 NM_014325 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 281-8 chr13 50911947 50912255 + 2.5 NA intron (NM_001142279, intron 1 of 9) intron (NM_001142279, intron 1 of 9) -1389 NR_046552 100874255 Hs.741501 NR_046552 RNASEH2B-AS1 - RNASEH2B antisense RNA 1 ncRNA 679.667 chr17 55743629 55744149 + 2.5 NA Intergenic Intergenic -7162 NM_001330378 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 380-2 chr1 65964041 65964231 + 2.5 NA intron (NM_002600, intron 3 of 16) intron (NM_002600, intron 3 of 16) -28480 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 411.333-3 chr11 11361765 11361989 + 2.5 NA intron (NM_198516, intron 6 of 10) intron (NM_198516, intron 6 of 10) -8627 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 705.833-3 chr20 31557158 31557909 + 2.5 NA intron (NM_178580, intron 8 of 12) intron (NM_178580, intron 8 of 12) 15730 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 342-7 chr2 118048229 118048486 + 2.5 NA Intergenic Intergenic -34287 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 540-2 chr2 225658400 225658867 + 2.5 NA intron (NM_001371273, intron 7 of 7) intron (NM_001371273, intron 7 of 7) 257747 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 693-2 chr2 95076661 95077197 + 2.5 NA Intergenic CpG 44628 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 391-5 chr3 28668455 28668823 + 2.5 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 93361 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 277.167-4 chr13 73002323 73002489 + 2.5 NA intron (NR_146206, intron 16 of 16) intron (NR_146206, intron 16 of 16) -52570 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 475.5-2 chr2 163875680 163876036 + 2.5 NA Intergenic Intergenic -139850 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 519.667 chr1 162848402 162848819 + 2.5 NA Intergenic Intergenic 20205 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 199-51 chr7 70833994 70834094 + 2.5 NA Intergenic Tigger7|DNA|TcMar-Tigger -298100 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 283.667-20 chr9 135602002 135602540 + 2.5 NA Intergenic L1M5|LINE|L1 27346 NR_109814 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 475.667-5 chr19 42075841 42076349 + 2.5 NA promoter-TSS (NM_022752) promoter-TSS (NM_022752) -71 NM_022752 64763 Hs.13323 NM_022752 ENSG00000105732 ZNF574 FP972 zinc finger protein 574 protein-coding 514.5-5 chr6 111233466 111233829 + 2.5 NA Intergenic L2-3_Crp|LINE|L2 -25692 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 274.167-15 chr6 136868136 136868282 + 2.5 NA intron (NM_000288, intron 6 of 9) Tigger3|DNA|TcMar-Tigger 45617 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 788.833-2 chrX 145404791 145405410 + 2.5 NA Intergenic Intergenic 157597 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 713-2 chr17 7822668 7823268 + 2.5 NA intron (NM_020877, intron 73 of 85) intron (NM_020877, intron 73 of 85) -16938 NM_001348716 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 328.334-5 chr20 52774360 52774524 + 2.5 NA Intergenic Intergenic 153604 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 483-4 chr5 33052649 33052886 + 2.5 NA Intergenic L1M2a|LINE|L1 105324 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 657.667-2 chr16 21188345 21189101 + 2.5 NA Intergenic Intergenic 25787 NM_003460 7783 Hs.73982 NM_003460 ENSG00000103310 ZP2 OOMD6|ZPA|Zp-2 zona pellucida glycoprotein 2 protein-coding 864.333 chr12 69570467 69571412 + 2.5 NA intron (NM_001278354, intron 7 of 9) MIRb|SINE|MIR -13784 NR_037476 100500868 NR_037476 ENSG00000283677 MIR3913-2 mir-3913-2 microRNA 3913-2 ncRNA 701.499 chr2 58571156 58571686 + 2.5 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 50668 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 717.333 chr21 17512394 17513167 + 2.5 NA promoter-TSS (NM_001338) promoter-TSS (NM_001338) -126 NM_001207066 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 217.666-4 chr6 103797861 103797999 + 2.5 NA Intergenic Intergenic 1061616 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 394.5-2 chr12 31400065 31400341 + 2.5 NA intron (NM_144973, intron 15 of 20) intron (NM_144973, intron 15 of 20) -30902 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 598.667-3 chr6 98002697 98003165 + 2.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -21600 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 275.5-9 chr11 81570181 81570440 + 2.5 NA Intergenic Intergenic 320526 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 523.999-2 chr13 29771115 29771395 + 2.5 NA intron (NM_007106, intron 3 of 4) intron (NM_007106, intron 3 of 4) 79362 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 306.5-8 chr18 7930449 7930593 + 2.5 NA intron (NM_002845, intron 5 of 30) intron (NM_002845, intron 5 of 30) 363205 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 523.5-2 chr11 97236880 97237106 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 728568 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 223.333-28 chr21 29132035 29132182 + 2.5 NA intron (NM_001371371, intron 1 of 4) intron (NM_001371371, intron 1 of 4) 894 NM_001371371 427-2 chr11 79100060 79100504 + 2.5 NA intron (NM_001098816, intron 4 of 33) intron (NM_001098816, intron 4 of 33) 301827 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 426.833 chr13 28805140 28805416 + 2.5 NA Intergenic Intergenic -15061 NM_001366650 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 333.5-10 chr17 10646387 10646636 + 2.5 NA intron (NM_002470, intron 10 of 40) intron (NM_002470, intron 10 of 40) 10798 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 179.667-38 chr5 55359760 55360081 + 2.5 NA intron (NM_015360, intron 15 of 26) intron (NM_015360, intron 15 of 26) 51931 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 218.667-29 chr4 123564879 123565042 + 2.5 NA Intergenic Intergenic -85031 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 553.667-2 chr7 2821452 2821764 + 2.5 NA intron (NM_001293092, intron 1 of 2) intron (NM_001293092, intron 1 of 2) -6378 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 287.833-16 chr8 121111243 121111568 + 2.5 NA Intergenic Intergenic -299359 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 390.834-6 chr5 93532892 93533075 + 2.5 NA intron (NR_109825, intron 5 of 8) intron (NR_109825, intron 5 of 8) 38360 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 397-15 chr4 110211272 110211504 + 2.5 NA Intergenic Intergenic -12773 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 838.501-3 chr6 126803805 126804840 + 2.5 NA Intergenic Intergenic -314349 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 511.167-2 chr6 162907849 162908114 + 2.5 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 146180 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 811.667 chr5 149366887 149367933 + 2.5 NA exon (NM_024028, exon 5 of 6) exon (NM_024028, exon 5 of 6) 9364 NM_001301057 78991 Hs.644397 NM_024028 ENSG00000145882 PCYOX1L - prenylcysteine oxidase 1 like protein-coding 447.5-6 chr3 155028758 155028982 + 2.5 NA intron (NM_001354642, intron 1 of 22) MER57A-int|LTR|ERV1 4746 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 783.501-2 chr9 133147204 133148165 + 2.5 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) 1526 NM_001042368 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 415.667-5 chr2 197379300 197379490 + 2.5 NA Intergenic Intergenic 55698 NM_012433 23451 Hs.632554 NM_012433 ENSG00000115524 SF3B1 Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 splicing factor 3b subunit 1 protein-coding 1216.67 chr17 74379165 74380151 + 2.5 NA Intergenic Intergenic 12152 NM_001331077 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 489.166 chr5 140868396 140868958 + 2.5 NA TTS (NM_031859) TTS (NM_031859) 1164 NM_018902 56138 Hs.199343 NM_018902 ENSG00000249158 PCDHA11 CNR7|CNRN7|CNRS7|CRNR7|PCDH-ALPHA11 protocadherin alpha 11 protein-coding 783.333 chr1 39657830 39658480 + 2.5 NA TTS (NM_032526) TTS (NM_032526) 13883 NM_032526 84618 Hs.307006 NM_032526 ENSG00000116981 NT5C1A CN-I|CN-IA|CN1|CN1A|CNI 5'-nucleotidase, cytosolic IA protein-coding 1204.67-2 chrX 38327161 38327925 + 2.5 NA promoter-TSS (NM_001367248) promoter-TSS (NM_001367248) -34 NM_001367249 6103 Hs.61438 NM_000328 ENSG00000156313 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 534.667 chr15 78176988 78177511 + 2.5 NA intron (NM_015162, intron 11 of 13) L1M5|LINE|L1 27887 NM_005530 3419 Hs.591110 NM_005530 ENSG00000166411 IDH3A - isocitrate dehydrogenase (NAD(+)) 3 alpha protein-coding 436.667-6 chr2 21329693 21329972 + 2.5 NA Intergenic Intergenic 205846 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 257-8 chr12 14403804 14403916 + 2.5 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 18579 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 1253.33 chr1 107748715 107749476 + 2.5 NA intron (NM_006113, intron 14 of 26) intron (NM_006113, intron 14 of 26) -60596 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 415.5-8 chrX 81121413 81121862 + 2.5 NA 5' UTR (NM_030763, exon 2 of 7) 5' UTR (NM_030763, exon 2 of 7) 80276 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 856.834 chr1 156657182 156657898 + 2.5 NA intron (NM_021948, intron 10 of 13) intron (NM_021948, intron 10 of 13) 15423 NM_198427 63827 Hs.516904 NM_021948 ENSG00000132692 BCAN BEHAB|CSPG7 brevican protein-coding 942.167-3 chr8 90948227 90948911 + 2.5 NA intron (NM_022351, intron 10 of 12) intron (NM_022351, intron 10 of 12) 36508 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 400.667-8 chr4 11765607 11766025 + 2.5 NA intron (NR_146995, intron 1 of 3) intron (NR_146995, intron 1 of 3) 3652 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 205-26 chr6 126911093 126911224 + 2.5 NA Intergenic Intergenic -207513 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 504.666 chr1 176949209 176949491 + 2.5 NA exon (NM_001286164, exon 12 of 23) exon (NM_001286164, exon 12 of 23) 80095 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 596-2 chr16 75772688 75773146 + 2.5 NA Intergenic L1MEg|LINE|L1 -46427 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 696.167 chr12 57756690 57757162 + 2.5 NA intron (NM_138396, intron 1 of 3) intron (NM_138396, intron 1 of 3) 1823 NM_138396 92979 Hs.632709 NM_138396 ENSG00000139266 MARCH9 MARCH-IX|RNF179 membrane associated ring-CH-type finger 9 protein-coding 608.999 chr6 159151261 159151753 + 2.5 NA Intergenic MLT1O|LTR|ERVL-MaLR -17893 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 614.167 chr10 102901157 102901934 + 2.5 NA non-coding (NR_037644, exon 15 of 15) non-coding (NR_037644, exon 15 of 15) -16749 NM_017649 54805 Hs.643509 NM_017649 ENSG00000148842 CNNM2 ACDP2|HOMG6|HOMGSMR cyclin and CBS domain divalent metal cation transport mediator 2 protein-coding 335.333-5 chr2 186577522 186577753 + 2.5 NA Intergenic Intergenic -12419 NM_001145000 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 831.5-2 chr20 31569139 31570095 + 2.5 NA TTS (NM_030789) TTS (NM_030789) 3646 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 410-12 chr4 149541006 149541324 + 2.5 NA intron (NM_001363507, intron 12 of 13) intron (NM_001363507, intron 12 of 13) 274678 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 443.5-2 chr1 203172101 203172434 + 2.5 NA intron (NM_004997, intron 3 of 10) intron (NM_004997, intron 3 of 10) 3559 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 351.667-19 chr9 102357625 102357836 + 2.5 NA Intergenic Intergenic -161907 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 399.666-4 chr2 170395162 170395430 + 2.5 NA intron (NM_001083615, intron 16 of 33) intron (NM_001083615, intron 16 of 33) -44353 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 880.833 chr2 173401955 173402596 + 2.5 NA Intergenic Intergenic 47403 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 269.333-21 chr5 80481286 80481516 + 2.5 NA non-coding (NR_146173, exon 20 of 20) non-coding (NR_146173, exon 20 of 20) -6699 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 450-7 chr5 137743248 137743607 + 2.5 NA Intergenic Intergenic -7338 NM_017415 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 332.5-11 chr3 44259464 44259684 + 2.5 NA intron (NM_001145030, intron 4 of 19) L1MC5a|LINE|L1 17688 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 263.333-11 chr2 36947586 36947691 + 2.5 NA intron (NM_003162, intron 1 of 17) intron (NM_003162, intron 1 of 17) 18898 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 666.834-2 chr17 79839523 79839969 + 2.5 NA promoter-TSS (NM_003655) promoter-TSS (NM_003655) -306 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 579.5-3 chr6 24389419 24389958 + 2.5 NA Intergenic AluSg|SINE|Alu -6396 NM_001195610 51473 Hs.61345 NM_016356 ENSG00000146038 DCDC2 DCDC2A|DFNB66|NPHP19|NSC|RU2|RU2S doublecortin domain containing 2 protein-coding 612-2 chr14 44906721 44907143 + 2.5 NA 3' UTR (NM_001017923, exon 5 of 5) 3' UTR (NM_001017923, exon 5 of 5) 4985 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 529.167 chr4 33657656 33657934 + 2.5 NA Intergenic L1MEd|LINE|L1 382098 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 647.167-2 chr2 20051785 20052214 + 2.5 NA promoter-TSS (NM_014713) promoter-TSS (NM_014713) -371 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 612.333 chr11 47934443 47934875 + 2.5 NA Intergenic Intergenic -45900 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 645 chr20 49845975 49846626 + 2.5 NA intron (NR_048540, intron 5 of 11) intron (NR_048540, intron 5 of 11) -17559 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 459-3 chr17 32376282 32376602 + 2.5 NA Intergenic Intergenic 26304 NM_001098507 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 730.667 chrX 102863656 102864466 + 2.5 NA intron (NR_146584, intron 12 of 18) intron (NR_146584, intron 12 of 18) -73211 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 552-2 chr11 71989503 71989965 + 2.5 NA intron (NM_018320, intron 5 of 8) LTR106_Mam|LTR|LTR -9175 NM_001039660 10068 Hs.591967 NM_005699 ENSG00000137496 IL18BP IL18BPa interleukin 18 binding protein protein-coding 733-2 chr2 25342308 25342867 + 2.5 NA promoter-TSS (NM_175630) promoter-TSS (NM_175630) 3 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 174.333-8 chr11 97199187 97199260 + 2.5 NA Intergenic L1PBb|LINE|L1 690798 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 594.334-2 chr4 26081758 26082291 + 2.5 NA Intergenic Intergenic 167832 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 876.5-3 chr6 121849419 121850131 + 2.5 NA Intergenic Intergenic 414129 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 216.5-8 chr10 88648971 88649065 + 2.5 NA Intergenic AluJb|SINE|Alu -15424 NM_001198829 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 487.666 chr11 47002852 47003159 + 2.5 NA intron (NR_103472, intron 2 of 7) intron (NR_103472, intron 2 of 7) 66244 NR_103471 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 1145.83-3 chr2 85827165 85827893 + 2.5 NA TTS (NR_038888) TTS (NR_038888) 12399 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 370-9 chr2 197874565 197874765 + 2.5 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 70072 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 496.333-5 chr8 89994460 89994678 + 2.5 NA Intergenic Intergenic -6783 NM_001330575 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 432.5-5 chr3 33646449 33646624 + 2.5 NA intron (NM_001365634, intron 7 of 35) intron (NM_001365634, intron 7 of 35) 13143 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 263.5-20 chr22 35622559 35622690 + 2.5 NA promoter-TSS (NM_001362846) promoter-TSS (NM_001362846) -95 NM_001362846 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 369.166 chrX 68238490 68238805 + 2.5 NA intron (NM_002547, intron 5 of 24) L1M5|LINE|L1 194848 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 407-3 chr4 62466878 62467272 + 2.5 NA Intergenic L1PA16|LINE|L1 -305310 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1025.67 chr6 46990623 46991365 + 2.5 NA Intergenic Intergenic -36055 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 467-2 chr12 82608820 82609204 + 2.5 NA Intergenic Intergenic -77894 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 749-2 chr2 55961284 55961709 + 2.5 NA Intergenic Intergenic 21580 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 527-2 chr14 56586828 56587195 + 2.5 NA intron (NM_017799, intron 3 of 15) intron (NM_017799, intron 3 of 15) 7213 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 507.667 chr15 68550287 68550647 + 2.5 NA intron (NM_001324014, intron 2 of 12) MIR|SINE|MIR -28526 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 446.667-3 chr5 94461235 94461552 + 2.5 NA intron (NM_001145678, intron 12 of 20) intron (NM_001145678, intron 12 of 20) 157211 NM_173665 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 273-12 chr17 81094908 81095155 + 2.5 NA intron (NM_001144888, intron 6 of 13) intron (NM_001144888, intron 6 of 13) 30342 NR_030394 724027 NR_030394 ENSG00000207736 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 356.167-3 chr1 222638717 222638885 + 2.5 NA intron (NM_198551, intron 6 of 27) L1ME1|LINE|L1 -5502 NM_001300867 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 432.667-9 chr8 135776581 135776816 + 2.5 NA Intergenic LTR16A|LTR|ERVL 319242 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 507.167 chr11 100855628 100856001 + 2.5 NA intron (NM_001367945, intron 5 of 25) intron (NM_001367945, intron 5 of 25) -78460 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 1048-4 chr9 97710381 97711038 + 2.5 NA intron (NR_147055, intron 9 of 10) MIRb|SINE|MIR -13300 NR_149091 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 437-9 chr5 53170712 53171165 + 2.5 NA Intergenic Intergenic 61096 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 350.333 chr1 173137407 173137634 + 2.5 NA Intergenic L2c|LINE|L2 68012 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 518.333 chr12 121110167 121110748 + 2.5 NA Intergenic Intergenic -22419 NR_033955 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 334.333-10 chr20 50645669 50645865 + 2.5 NA non-coding (NR_111906, exon 2 of 3) non-coding (NR_111906, exon 2 of 3) 296 NR_111906 100506175 Hs.658270 NR_111906 ENSG00000234693 LOC100506175 - uncharacterized LOC100506175 ncRNA 1427.67 chr10 28241749 28243053 + 2.5 NA intron (NR_134518, intron 1 of 16) intron (NR_134518, intron 1 of 16) 39722 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 275-20 chr3 82103382 82103739 + 2.5 NA intron (NR_147146, intron 1 of 8) L1ME1|LINE|L1 117418 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 206.333-2 chr1 23010517 23010928 + 2.5 NA TTS (NM_001242521) TTS (NM_001242521) 5130 NM_001242521 729059 Hs.236896 NM_001242521 ENSG00000227868 TEX46 C1orf234|TEX# testis expressed 46 protein-coding 696.333-2 chr6 2952386 2952831 + 2.5 NA intron (NM_001271822, intron 5 of 6) intron (NM_001271822, intron 5 of 6) 9522 NM_001271825 5269 Hs.519523 NM_004568 ENSG00000124570 SERPINB6 CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3 serpin family B member 6 protein-coding 684.833-5 chr9 133179804 133180668 + 2.5 NA Intergenic Intergenic -16322 NM_001288572 26301 Hs.495419 NM_021996 ENSG00000148288 GBGT1 A3GALNT|FS|UNQ2513 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) protein-coding 323.5-2 chr13 27712689 27712829 + 2.5 NA Intergenic MIRb|SINE|MIR -79724 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 774.833 chr19 18520050 18520677 + 2.5 NA intron (NM_006532, intron 1 of 11) intron (NM_006532, intron 1 of 11) 1707 NM_006532 8178 Hs.515260 NM_006532 ENSG00000105656 ELL C19orf17|ELL1|MEN|PPP1R68 elongation factor for RNA polymerase II protein-coding 723.167 chr5 94146479 94147318 + 2.5 NA Intergenic L1MA1|LINE|L1 -35199 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 306.5-4 chr10 107814959 107815236 + 2.5 NA Intergenic Intergenic 254196 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 426-16 chr8 101961499 101961756 + 2.5 NA intron (NM_001040624, intron 3 of 7) FLAM_A|SINE|Alu -22805 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 582.5-5 chr8 59378426 59378827 + 2.5 NA Intergenic Intergenic 259416 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 499.667-2 chr6 75230246 75230727 + 2.5 NA Intergenic Intergenic 13315 NR_158783 1347 Hs.70312 NM_001865 ENSG00000112695 COX7A2 COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL cytochrome c oxidase subunit 7A2 protein-coding 592-3 chr9 38087718 38088377 + 2.5 NA Intergenic Intergenic -18820 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 312.334-4 chr4 174714207 174714813 + 2.5 NA intron (NM_006529, intron 5 of 9) intron (NM_006529, intron 5 of 9) 114737 NM_001042543 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 254.833 chr1 19917957 19918404 + 2.5 NA Intergenic Intergenic 5437 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 820.332 chr18 61635744 61636243 + 2.5 NA Intergenic Intergenic -112183 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 517-3 chr5 108481256 108481588 + 2.5 NA Intergenic Intergenic -99324 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 640.834 chr2 217785071 217785884 + 2.5 NA Intergenic Intergenic -28884 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 443 chr10 45672666 45672969 + 2.5 NA promoter-TSS (NM_001282905) promoter-TSS (NM_001282905) -4 NM_001128324 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 734.833 chr1 214123322 214123830 + 2.5 NA Intergenic Intergenic 135043 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 1110.83-3 chr14 35687273 35688205 + 2.5 NA intron (NM_014990, intron 17 of 40) intron (NM_014990, intron 17 of 40) 75192 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 478.167-6 chr22 38100581 38101367 + 2.5 NA intron (NM_025045, intron 4 of 13) L1ME2|LINE|L1 9710 NM_025045 80115 Hs.474822 NM_025045 ENSG00000128298 BAIAP2L2 - BAI1 associated protein 2 like 2 protein-coding 703.333-2 chr20 57381375 57381904 + 2.5 NA Intergenic MIR|SINE|MIR -9757 NM_017495 55544 Hs.236361 NM_017495 ENSG00000132819 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 259.5-7 chr12 89529858 89529994 + 2.5 NA intron (NR_146294, intron 1 of 1) intron (NR_146294, intron 1 of 1) -3664 NM_001199782 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 GALNT4|GalNAc-T4 POC1B-GALNT4 readthrough protein-coding 431-2 chr11 76502653 76502893 + 2.5 NA intron (NM_001300942, intron 10 of 21) L1MB8|LINE|L1 57748 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 182.5-31 chr5 66830787 66831199 + 2.5 NA intron (NM_015183, intron 1 of 27) MIR1_Amn|SINE|MIR 2220 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 518-2 chrX 14032451 14032974 + 2.5 NA Intergenic Intergenic -2820 NM_017856 54960 Hs.592237 NM_017856 ENSG00000046647 GEMIN8 FAM51A1 gem nuclear organelle associated protein 8 protein-coding 1647.5 chr1 150559879 150561503 + 2.5 NA TTS (NR_104133) TTS (NR_104133) 8762 NR_036211 100422997 NR_036211 ENSG00000264553 MIR4257 - microRNA 4257 ncRNA 751.5 chr11 72585618 72586088 + 2.5 NA intron (NM_001143839, intron 13 of 29) intron (NM_001143839, intron 13 of 29) 15197 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 569-5 chr7 91082082 91082438 + 2.5 NA intron (NM_012395, intron 11 of 13) intron (NM_012395, intron 11 of 13) -182173 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 505.667-7 chr9 114681287 114681724 + 2.5 NA intron (NR_144867, intron 1 of 4) MIR|SINE|MIR 584 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 399.833 chr13 40088408 40088690 + 2.5 NA Intergenic MIR|SINE|MIR -93260 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 384.5-3 chr11 132969197 132969393 + 2.5 NA intron (NM_001012393, intron 1 of 7) L1M4b|LINE|L1 -25527 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 366.667-10 chr9 28529304 28529581 + 2.5 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 189863 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 920.832 chr7 82572170 82573180 + 2.5 NA Intergenic Intergenic -128719 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 600.833 chr1 47178947 47179606 + 2.5 NA promoter-TSS (NR_047498) promoter-TSS (NR_047498) 26 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 575.834-3 chr2 216403981 216404485 + 2.5 NA Intergenic Intergenic -8181 NM_014140 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 537.667-6 chr2 95079924 95080829 + 2.5 NA Intergenic AluY|SINE|Alu 41181 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 581.666 chr1 205122003 205122486 + 2.5 NA promoter-TSS (NM_005057) promoter-TSS (NM_005057) -266 NM_005057 5929 Hs.519230 NM_005057 ENSG00000117222 RBBP5 RBQ3|SWD1 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding 338-9 chr3 51637831 51638156 + 2.5 NA intron (NM_001322253, intron 12 of 23) intron (NM_001322253, intron 12 of 23) -33182 NM_001243727 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264, ER-phagy receptor protein-coding 376.167-4 chr11 72831293 72831655 + 2.5 NA Intergenic AluSq2|SINE|Alu 17063 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 850.167 chr22 16917097 16917875 + 2.5 NA Intergenic Intergenic 90012 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 723.667 chr7 80661380 80661755 + 2.5 NA intron (NM_001289909, intron 4 of 11) intron (NM_001289909, intron 4 of 11) 14914 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 666.334 chr14 24805719 24806620 + 2.5 NA Intergenic MIRb|SINE|MIR -171979 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 633 chr12 5200399 5200920 + 2.5 NA Intergenic Intergenic 42492 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 778.333-2 chr7 3921980 3922755 + 2.5 NA intron (NM_152744, intron 5 of 44) MER63A|DNA|hAT-Blackjack -207318 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 764.166 chr1 155085912 155086584 + 2.5 NA intron (NM_004952, intron 4 of 4) intron (NM_004952, intron 4 of 4) 7411 NM_004952 1944 Hs.516656 NM_004952 ENSG00000143590 EFNA3 EFL2|EPLG3|Ehk1-L|LERK3 ephrin A3 protein-coding 723.5-2 chr7 87797568 87798219 + 2.5 NA intron (NM_001134406, intron 8 of 9) Tigger9a|DNA|TcMar-Tigger 78467 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 337.166-2 chr4 38889198 38889427 + 2.5 NA intron (NM_001350635, intron 2 of 8) intron (NM_001350635, intron 2 of 8) 21280 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 462.167-2 chr6 146988869 146989208 + 2.5 NA intron (NR_034115, intron 6 of 10) intron (NR_034115, intron 6 of 10) -169887 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 408.333-3 chr3 52798992 52799309 + 2.5 NA intron (NM_002217, intron 7 of 21) intron (NM_002217, intron 7 of 21) 4382 NM_002217 3699 Hs.76716 NM_002217 ENSG00000162267 ITIH3 H3P|ITI-HC3|SHAP inter-alpha-trypsin inhibitor heavy chain 3 protein-coding 810.833-2 chr6 85323377 85324056 + 2.5 NA Intergenic Intergenic 66470 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 873.166 chr9 36873209 36873854 + 2.5 NA intron (NM_001280549, intron 6 of 7) intron (NM_001280549, intron 6 of 7) -9223 NR_039766 100616278 NR_039766 ENSG00000264922 MIR4540 - microRNA 4540 ncRNA 459.5-5 chr2 2350733 2351027 + 2.5 NA Intergenic Intergenic -19605 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 747.667 chr4 138870880 138871494 + 2.5 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 141459 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 280-9 chr17 17921292 17921537 + 2.5 NA intron (NM_001288787, intron 1 of 13) intron (NM_001288787, intron 1 of 13) 50986 NM_001350333 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 412-5 chr4 48619894 48620341 + 2.5 NA intron (NM_015030, intron 6 of 63) intron (NM_015030, intron 6 of 63) 129865 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 732 chr7 35976040 35976508 + 2.5 NA Intergenic Intergenic -119036 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 318-21 chrX 23616542 23616794 + 2.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -50825 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 585.667-3 chr2 71798118 71798768 + 2.5 NA Intergenic Intergenic 331744 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 673.833 chr10 114471304 114471770 + 2.5 NA intron (NM_001352440, intron 10 of 20) intron (NM_001352440, intron 10 of 20) 55376 NM_006720 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 683.833-3 chr7 121081482 121081913 + 2.5 NA intron (NM_001105533, intron 4 of 17) intron (NM_001105533, intron 4 of 17) 92306 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 845.166 chr15 33735286 33736384 + 2.5 NA intron (NM_001243996, intron 48 of 102) UCON132b|DNA|hAT-Tip100 -232662 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 1226.67 chr7 85191334 85192173 + 2.5 NA Intergenic Intergenic -69822 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 203-10 chr13 52968208 52968381 + 2.5 NA Intergenic Intergenic -60519 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 376-12 chr8 114301578 114301802 + 2.5 NA Intergenic L1ME1|LINE|L1 -864751 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 537.333-4 chr8 4997000 4997563 + 2.5 NA Intergenic Intergenic -2367 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 322.5-6 chr15 63610260 63610487 + 2.5 NA intron (NM_003922, intron 77 of 77) intron (NM_003922, intron 77 of 77) -9546 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 685.834-2 chr19 42242687 42243261 + 2.5 NA promoter-TSS (NM_019884) promoter-TSS (NM_019884) -372 NM_019884 2931 Hs.466828 NM_019884 ENSG00000105723 GSK3A - glycogen synthase kinase 3 alpha protein-coding 351.334-7 chr5 10834131 10834388 + 2.5 NA Intergenic AluJr4|SINE|Alu -73025 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 589.667-2 chr8 79765334 79765846 + 2.5 NA exon (NM_012258, exon 5 of 5) exon (NM_012258, exon 5 of 5) 885 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 372.167-7 chr6 109705122 109705368 + 2.5 NA intron (NM_014845, intron 1 of 22) intron (NM_014845, intron 1 of 22) 14024 NM_014845 9896 Hs.529959 NM_014845 ENSG00000112367 FIG4 ALS11|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1 FIG4 phosphoinositide 5-phosphatase protein-coding 767.999 chr3 132038026 132038482 + 2.5 NA promoter-TSS (NM_001289112) promoter-TSS (NM_001289112) -450 NM_001289112 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 1176.33 chr2 47767605 47768511 + 2.5 NA Intergenic Intergenic -15024 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 435.5-5 chr18 13474123 13474352 + 2.5 NA intron (NM_181482, intron 4 of 5) MSTA|LTR|ERVL-MaLR 14290 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 1101.5-2 chr6 117448745 117449866 + 2.5 NA Intergenic Intergenic -23450 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 341.334-4 chr5 120803199 120803737 + 2.5 NA Intergenic Intergenic 272004 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 738.833-2 chr5 95892940 95893358 + 2.5 NA intron (NM_012081, intron 9 of 11) intron (NM_012081, intron 9 of 11) 40917 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 563.667-3 chr7 31938869 31939453 + 2.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 131246 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 900.333-2 chr17 30021510 30022243 + 2.5 NA intron (NR_026738, intron 7 of 15) intron (NR_026738, intron 7 of 15) 80242 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 954.5-2 chr2 203238773 203239343 + 2.5 NA 5' UTR (NM_177538, exon 1 of 13) 5' UTR (NM_177538, exon 1 of 13) 617 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 276.333-5 chr2 80499276 80499472 + 2.5 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 185995 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 780.167 chr12 57182858 57183382 + 2.5 NA intron (NM_002332, intron 34 of 88) intron (NM_002332, intron 34 of 88) -11384 NR_031597 100302201 NR_031597 ENSG00000221365 MIR1228 MIRN1228|hsa-mir-1228|mir-1228 microRNA 1228 ncRNA 369.167-7 chr3 106518274 106518528 + 2.5 NA Intergenic L1PA12|LINE|L1 -649000 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 318.5-12 chr6 133922444 133922709 + 2.5 NA Intergenic MIRb|SINE|MIR -29594 NM_001253676 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 510-6 chr3 159263895 159264238 + 2.5 NA TTS (NM_001042706) TTS (NM_001042706) -9181 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 420.167-3 chr10 26860897 26861464 + 2.5 NA promoter-TSS (NM_001348034) promoter-TSS (NM_001348034) -93 NM_001178122 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 173.5-27 chr17 51234538 51234648 + 2.5 NA intron (NM_017643, intron 2 of 16) L1ME1|LINE|L1 25456 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 250.167-6 chr13 54563484 54563676 + 2.5 NA Intergenic Intergenic -251532 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 178.333-2 chr1 104251161 104251247 + 2.5 NA Intergenic Intergenic 178181 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 976.5 chr1 61338062 61338648 + 2.5 NA intron (NM_001134673, intron 4 of 10) intron (NM_001134673, intron 4 of 10) -84837 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 332.833-6 chr14 52067028 52067247 + 2.5 NA intron (NM_007361, intron 2 of 21) L1ME4a|LINE|L1 1922 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 1037.33 chr11 43944194 43945239 + 2.5 NA TTS (NM_001145033) TTS (NM_001145033) 2079 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 695.334 chr1 34162904 34163579 + 2.5 NA intron (NM_052896, intron 1 of 69) CpG 2033 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 401.5-10 chr8 90619103 90619323 + 2.5 NA Intergenic Intergenic -13150 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 317.667-5 chr15 100899957 100900235 + 2.5 NA intron (NM_000693, intron 8 of 12) intron (NM_000693, intron 8 of 12) 19187 NR_135831 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 922-2 chr6 12637830 12638458 + 2.5 NA Intergenic Intergenic -52740 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 292.5-20 chr8 73972300 73972474 + 2.5 NA promoter-TSS (NM_001204864) promoter-TSS (NM_001204864) -100 NM_001204860 6921 Hs.533437 NM_005648 ENSG00000154582 ELOC SIII|TCEB1 elongin C protein-coding 721.334-2 chr18 52288393 52288857 + 2.5 NA Intergenic Intergenic -51572 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 739.499 chr7 123494140 123494772 + 2.5 NA intron (NR_104244, intron 7 of 13) intron (NR_104244, intron 7 of 13) 38492 NM_001321293 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 434-6 chr17 30491781 30492091 + 2.5 NA intron (NM_004871, intron 5 of 8) MIRc|SINE|MIR 14528 NM_001007024 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 1085 chr1 68342657 68343374 + 2.5 NA Intergenic Intergenic 106939 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 1288.33 chr15 92714403 92715465 + 2.5 NA Intergenic CpG -59159 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 442-8 chr8 104028085 104028401 + 2.5 NA intron (NR_145710, intron 24 of 29) intron (NR_145710, intron 24 of 29) -195092 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 220.834-6 chr5 28819863 28820017 + 2.5 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -106930 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 411.834-3 chr3 67286978 67287293 + 2.5 NA Intergenic Intergenic 61671 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 365.5-8 chr18 9637447 9637698 + 2.5 NA Intergenic Intergenic 22308 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 276.833-5 chr13 95530381 95530645 + 2.5 NA intron (NR_046533, intron 1 of 3) intron (NR_046533, intron 1 of 3) 3397 NR_046533 100874194 Hs.569229 NR_046533 ENSG00000223392 CLDN10-AS1 - CLDN10 antisense RNA 1 ncRNA 478.333-4 chr7 93799668 93799908 + 2.5 NA Intergenic Intergenic 82860 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 636.834-2 chr9 114661858 114662503 + 2.5 NA Intergenic MIR|SINE|MIR -4375 NM_001354645 105376230 Hs.147369 NM_001354645 ENSG00000230054 TEX53 - testis expressed 53 protein-coding 879.167-3 chr17 59756142 59757119 + 2.5 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 48976 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 404.166-2 chr4 22690966 22691267 + 2.5 NA Intergenic MIRb|SINE|MIR -1798 NM_001128432 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 412.334-2 chr16 82738563 82738879 + 2.5 NA intron (NM_001220488, intron 2 of 14) L2c|LINE|L2 -34598 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 287.5-2 chr11 34575454 34575622 + 2.5 NA Intergenic Intergenic -45555 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 216.167 chr1 32273867 32273967 + 2.5 NA promoter-TSS (NM_001042771) promoter-TSS (NM_001042771) -194 NM_001042771 3932 Hs.470627 NM_005356 ENSG00000182866 LCK IMD22|LSK|YT16|p56lck|pp58lck LCK proto-oncogene, Src family tyrosine kinase protein-coding 415-8 chr4 101117044 101117295 + 2.5 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 123703 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 574.5-3 chr8 124954274 124954761 + 2.5 NA Intergenic MamRTE1|LINE|RTE-BovB 12509 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 644.334-2 chr3 116614583 116615025 + 2.5 NA Intergenic L1MB2|LINE|L1 62331 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 1117.5-4 chr7 91089289 91090135 + 2.5 NA intron (NM_012395, intron 11 of 13) intron (NM_012395, intron 11 of 13) -174721 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 822.834 chr17 47315463 47316398 + 2.5 NA intron (NR_110880, intron 2 of 2) intron (NR_110880, intron 2 of 2) 7683 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 784.333 chr12 113098234 113098768 + 2.5 NA TTS (NM_001301202) TTS (NM_001301202) 37098 NM_001301202 8437 Hs.528693 NM_004658 ENSG00000111344 RASAL1 RASAL RAS protein activator like 1 protein-coding 372.333-8 chr3 95428823 95429133 + 2.5 NA Intergenic Intergenic 254215 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 339.333-14 chr4 115127643 115127980 + 2.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -14191 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 479.833 chr14 67704597 67705077 + 2.5 NA intron (NM_152443, intron 1 of 8) intron (NM_152443, intron 1 of 8) 2951 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 851.667 chr7 104643397 104644211 + 2.5 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 160288 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 402.667-16 chr6 13331988 13332199 + 2.5 NA Intergenic Intergenic -3510 NM_001318805 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 763.5 chr2 37376826 37377755 + 2.5 NA Intergenic Tigger12|DNA|TcMar-Tigger 32660 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 860.833 chr6 131519333 131520150 + 2.5 NA Intergenic L1PA15-16|LINE|L1 -53485 NM_001369020 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 358.667 chr1 8726639 8726934 + 2.5 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 90854 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 288.167-5 chr10 120978441 120978774 + 2.5 NA Intergenic Intergenic 127245 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 1172 chr3 98023003 98023835 + 2.5 NA intron (NM_001105580, intron 3 of 9) intron (NM_001105580, intron 3 of 9) 11885 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 698.167-3 chr4 146916309 146917329 + 2.5 NA intron (NR_133922, intron 4 of 13) intron (NR_133922, intron 4 of 13) 29045 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 228.667-23 chr2 169276201 169276296 + 2.5 NA intron (NM_004525, intron 13 of 78) intron (NM_004525, intron 13 of 78) 86286 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 660.5-3 chr4 90357012 90357841 + 2.5 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 122395 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 513.5 chr7 4867517 4867892 + 2.5 NA intron (NM_018059, intron 2 of 14) L1ME5|LINE|L1 -5674 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 465.833 chr14 52637598 52637941 + 2.5 NA TTS (NM_001099652) TTS (NM_001099652) 57789 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 748.167 chr1 86502301 86502787 + 2.5 NA Intergenic Intergenic 33617 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 232.834-5 chr15 65862627 65862773 + 2.5 NA Intergenic Intergenic -6791 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 240-14 chr12 68106122 68106350 + 2.5 NA Intergenic Intergenic 53504 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 263.833-8 chr3 122299769 122300043 + 2.5 NA Intergenic Intergenic -25342 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 1201.67-2 chr4 71713415 71714429 + 2.5 NA Intergenic MIR3|SINE|MIR 70157 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 412.667-6 chr20 5367081 5367308 + 2.5 NA Intergenic Intergenic -50462 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 521.833-4 chr6 68572445 68572721 + 2.5 NA Intergenic L1PA17|LINE|L1 61741 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 743.833-2 chr6 66971520 66972058 + 2.5 NA Intergenic Intergenic -1083562 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 603.167-2 chr20 21809179 21809498 + 2.5 NA Intergenic LTR16C|LTR|ERVL 103674 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 349.167-3 chr14 81667026 81667245 + 2.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -44074 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 470.333 chr10 97708883 97709247 + 2.5 NA Intergenic LTR40c|LTR|ERVL -4665 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 399.833-4 chr5 35183174 35183639 + 2.5 NA intron (NM_000949, intron 1 of 9) L3|LINE|CR1 47081 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 515-7 chr5 122500488 122501364 + 2.5 NA Intergenic Intergenic -21839 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 234.167-17 chr21 23775318 23775508 + 2.5 NA Intergenic Intergenic -390578 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 721-4 chr16 35552906 35553585 + 2.5 NA Intergenic CpG -46075 NR_034018 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 308-18 chr6 11766103 11766310 + 2.5 NA intron (NM_032744, intron 3 of 5) intron (NM_032744, intron 3 of 5) 12841 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 889-3 chr7 41002960 41003427 + 2.5 NA Intergenic Intergenic -23254 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 523.167-3 chr17 17591416 17591890 + 2.5 NA promoter-TSS (NM_148172) promoter-TSS (NM_148172) 55 NM_001267551 10400 Hs.714193 NM_007169 ENSG00000133027 PEMT PEAMT|PEMPT|PEMT2|PLMT|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 678.5 chr15 33729478 33730344 + 2.5 NA intron (NM_001243996, intron 47 of 102) intron (NM_001243996, intron 47 of 102) -238586 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 897.666-2 chr2 218852761 218853258 + 2.5 NA Intergenic Intergenic -6796 NM_006522 7475 Hs.29764 NM_006522 ENSG00000115596 WNT6 - Wnt family member 6 protein-coding 340-2 chr10 68414678 68415060 + 2.5 NA non-coding (NR_102264, exon 22 of 22) non-coding (NR_102264, exon 22 of 22) -7575 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 574.833-2 chr17 78992932 78993551 + 2.5 NA 3' UTR (NM_001159773, exon 5 of 5) 3' UTR (NM_001159773, exon 5 of 5) -13318 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 487.5-9 chr2 227103200 227103516 + 2.5 NA intron (NM_000092, intron 13 of 47) intron (NM_000092, intron 13 of 47) 61201 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 636-4 chr7 5704444 5705083 + 2.5 NA intron (NM_207111, intron 13 of 16) intron (NM_207111, intron 13 of 16) 7147 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 238.333-22 chr2 98485682 98485831 + 2.5 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 39746 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 536.833-2 chr5 94524819 94525425 + 2.5 NA intron (NM_001145678, intron 3 of 20) intron (NM_001145678, intron 3 of 20) 93482 NM_173665 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 782.501 chr7 116258210 116258807 + 2.5 NA 3' UTR (NM_152829, exon 7 of 7) 3' UTR (NM_152829, exon 7 of 7) 28156 NR_130923 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 428.5-5 chr4 127400879 127401403 + 2.5 NA Intergenic Intergenic -231816 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 351.5-6 chr15 50363645 50363858 + 2.5 NA Intergenic MER113|DNA|hAT-Charlie 3422 NR_039862 100616396 NR_039862 ENSG00000284284 MIR4712 - microRNA 4712 ncRNA 957.5 chr10 50224275 50224987 + 2.5 NA intron (NM_001143974, intron 6 of 18) MLT1J2|LTR|ERVL-MaLR 23979 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 469.667-3 chr19 41144377 41145245 + 2.5 NA Intergenic AluSx3|SINE|Alu 30379 NM_000774 1572 Hs.558318 NM_000774 ENSG00000197446 CYP2F1 C2F1|CYP2F|CYPIIF1 cytochrome P450 family 2 subfamily F member 1 protein-coding 294-21 chr8 94327581 94327784 + 2.5 NA Intergenic MER57A-int|LTR|ERV1 -65363 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 713.167-2 chr14 88555746 88556219 + 2.5 NA promoter-TSS (NM_007039) promoter-TSS (NM_007039) -975 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 527.334 chr10 96831280 96831977 + 2.5 NA promoter-TSS (NM_001170765) promoter-TSS (NM_001170765) -670 NM_001346516 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 523.5 chr11 40306552 40307339 + 2.5 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) -13815 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 411.5-5 chr9 87024667 87024864 + 2.5 NA intron (NR_027471, intron 1 of 1) L1MB7|LINE|L1 17361 NR_027471 440173 Hs.127361 NR_027471 ENSG00000269994 LOC440173 - uncharacterized LOC440173 ncRNA 515.167-3 chr4 79536561 79536914 + 2.5 NA intron (NR_038826, intron 3 of 3) intron (NR_038826, intron 3 of 3) 44144 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 242-30 chr7 24379363 24379468 + 2.5 NA Intergenic LTR1D1|LTR|ERV1 95225 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 242.5-4 chr1 234523686 234523823 + 2.5 NA Intergenic Intergenic 8025 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 391-6 chr9 115668564 115668816 + 2.5 NA Intergenic Intergenic 75549 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 739.334 chr15 40320642 40321107 + 2.5 NA Intergenic L3|LINE|CR1 -2818 NM_001301268 100505573 Hs.530791 NM_001301268 ENSG00000259330 INAFM2 LINC00984|OGU1 InaF motif containing 2 protein-coding 419-3 chr13 43930077 43930385 + 2.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 50327 NM_001350642 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 590.667-2 chr14 55416782 55417256 + 2.5 NA intron (NM_199047, intron 6 of 6) intron (NM_199047, intron 6 of 6) -5161 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 520.333 chr11 96122208 96122763 + 2.5 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -198278 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 361.667-7 chr14 35033256 35033483 + 2.5 NA Intergenic Intergenic -11538 NM_001079519 283635 Hs.446357 NM_173607 ENSG00000151327 FAM177A1 C14orf24 family with sequence similarity 177 member A1 protein-coding 878.501-2 chr14 71138598 71139447 + 2.5 NA Intergenic Intergenic -181454 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 353.5-15 chr7 33611634 33611816 + 2.5 NA intron (NM_001348041, intron 22 of 22) (TAATATA)n|Simple_repeat|Simple_repeat -293190 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 531.167-2 chr20 10959254 10959712 + 2.5 NA Intergenic L1MC4a|LINE|L1 -50211 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 527.333 chr11 84524614 84525222 + 2.5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 196024 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 301-28 chr8 96112010 96112258 + 2.5 NA Intergenic L1ME4a|LINE|L1 48672 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 403.666-4 chr8 125956467 125957017 + 2.5 NA Intergenic MER3|DNA|hAT-Charlie -5545 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 440.167-7 chr20 59515240 59515881 + 2.5 NA Intergenic Intergenic -61949 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 279.5-18 chr4 15006374 15006723 + 2.5 NA non-coding (NR_125911, exon 5 of 6) non-coding (NR_125911, exon 5 of 6) 4067 NM_001177384 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 577.667 chr20 11676465 11676961 + 2.5 NA Intergenic Intergenic 194002 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 887.167 chr2 143015694 143016233 + 2.5 NA intron (NM_001199241, intron 11 of 14) intron (NM_001199241, intron 11 of 14) -113456 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 504.5-4 chr3 124986265 124986899 + 2.5 NA intron (NM_020733, intron 14 of 16) intron (NM_020733, intron 14 of 16) -51831 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 420.5-5 chr14 26706851 26707146 + 2.5 NA intron (NR_147061, intron 2 of 6) MLT1B|LTR|ERVL-MaLR -102350 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 370-8 chr2 186739983 186740179 + 2.5 NA intron (NM_177454, intron 1 of 7) intron (NM_177454, intron 1 of 7) 46021 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 452.334-4 chr12 15636648 15637021 + 2.5 NA intron (NM_004447, intron 17 of 20) intron (NM_004447, intron 17 of 20) 90223 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 836.667-2 chr20 48635685 48636303 + 2.5 NA intron (NM_020820, intron 32 of 39) intron (NM_020820, intron 32 of 39) 192005 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 377-4 chr15 62899216 62899401 + 2.5 NA Intergenic Intergenic 75351 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 351.833-7 chr3 50519414 50519703 + 2.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -15314 NM_001291101 9254 Hs.476273 NM_006030 ENSG00000007402 CACNA2D2 CACNA2D calcium voltage-gated channel auxiliary subunit alpha2delta 2 protein-coding 404.833 chr11 108697990 108698428 + 2.5 NA intron (NM_004398, intron 9 of 17) intron (NM_004398, intron 9 of 17) 33140 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 339.833-10 chr8 30981304 30981519 + 2.5 NA Intergenic L1ME1|LINE|L1 51390 NM_013357 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 649.167-2 chr3 129489950 129490434 + 2.5 NA intron (NM_052990, intron 13 of 26) intron (NM_052990, intron 13 of 26) -38447 NM_000539 6010 Hs.247565 NM_000539 ENSG00000163914 RHO CSNBAD1|OPN2|RP4 rhodopsin protein-coding 426.667-3 chr3 29693195 29693410 + 2.5 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 240854 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 358-9 chr3 52057290 52057520 + 2.5 NA promoter-TSS (NM_001947) promoter-TSS (NM_001947) -834 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 653.5 chr12 51424545 51425195 + 2.5 NA promoter-TSS (NM_001258403) promoter-TSS (NM_001258403) 39 NM_001039960 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 349-6 chr11 20335730 20335987 + 2.5 NA Intergenic Intergenic -27827 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 669.667-3 chr17 79741849 79742344 + 2.5 NA 3' UTR (NM_178543, exon 6 of 6) 3' UTR (NM_178543, exon 6 of 6) 11153 NM_178543 339221 Hs.114084 NM_178543 ENSG00000182156 ENPP7 ALK-SMase|E-NPP 7|NPP-7|NPP7 ectonucleotide pyrophosphatase/phosphodiesterase 7 protein-coding 716.333 chr1 246492570 246493067 + 2.5 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) 14461 NM_001167740 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 620.834 chr3 22088664 22089645 + 2.5 NA Intergenic Intergenic 132015 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 1012.17-2 chr2 203453833 203454466 + 2.5 NA intron (NM_001329728, intron 12 of 15) intron (NM_001329728, intron 12 of 15) 81152 NM_203365 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 897.5 chr3 50259447 50260239 + 2.5 NA TTS (NM_001166425) TTS (NM_001166425) 7528 NR_110702 101928931 Hs.587216 NR_110702 ENSG00000232352 SEMA3B-AS1 - SEMA3B antisense RNA 1 (head to head) ncRNA 507-5 chr20 49486493 49486750 + 2.5 NA Intergenic Intergenic -3953 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 724.5 chr17 47664028 47664864 + 2.5 NA intron (NM_002265, intron 8 of 21) intron (NM_002265, intron 8 of 21) 13381 NM_001276453 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 1248 chr3 114826447 114827979 + 2.5 NA intron (NM_001348805, intron 4 of 10) intron (NM_001348805, intron 4 of 10) -45820 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 636.5 chr11 33131591 33132097 + 2.5 NA intron (NM_001326, intron 3 of 20) AluY|SINE|Alu 29636 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 223.667-20 chr15 20405149 20405331 + 2.5 NA Intergenic L1ME3A|LINE|L1 35247 NR_036443 440248 Hs.531509 NM_199045 ENSG00000206149 HERC2P9 - hect domain and RLD 2 pseudogene 9 pseudo 610.667-2 chr5 111478312 111478854 + 2.5 NA intron (NM_001744, intron 9 of 10) intron (NM_001744, intron 9 of 10) -33643 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 301-16 chr3 97261978 97262534 + 2.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -177351 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 550.666-2 chr12 7667337 7667791 + 2.5 NA intron (NM_001304566, intron 1 of 5) intron (NM_001304566, intron 1 of 5) -1656 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 252.333-5 chr12 62701014 62701141 + 2.5 NA intron (NM_020700, intron 6 of 9) L2a|LINE|L2 97391 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 392.5-7 chr6 96147732 96147959 + 2.5 NA intron (NM_006581, intron 2 of 2) X2_LINE|LINE|CR1 131871 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 526.167-4 chr9 112097498 112098157 + 2.5 NA intron (NM_022486, intron 10 of 16) intron (NM_022486, intron 10 of 16) 77470 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 535.333 chr2 112941687 112942182 + 2.5 NA Intergenic Intergenic 26741 NM_173205 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 482.001 chr1 152533125 152533573 + 2.5 NA Intergenic L1MC5a|LINE|L1 18867 NM_019060 54544 Hs.110196 NM_019060 ENSG00000169509 CRCT1 C1orf42|NICE-1|NICE1 cysteine rich C-terminal 1 protein-coding 719.667-3 chr18 2547254 2548216 + 2.5 NA intron (NM_022840, intron 5 of 8) intron (NM_022840, intron 5 of 8) 23770 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 291-13 chr17 68937198 68937375 + 2.5 NA intron (NM_001288985, intron 4 of 39) intron (NM_001288985, intron 4 of 39) 18106 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 599 chr1 170009946 170010583 + 2.5 NA intron (NM_014970, intron 10 of 19) intron (NM_014970, intron 10 of 19) 58651 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 934.499 chr17 79393175 79394073 + 2.5 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 122524 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 425.833-4 chr8 129697104 129697535 + 2.5 NA Intergenic Intergenic -17080 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 741.167-2 chr13 59318485 59319117 + 2.5 NA Intergenic Intergenic -693917 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 999.501 chr2 64586839 64587487 + 2.5 NA intron (NM_001002243, intron 8 of 8) intron (NM_001002243, intron 8 of 8) -20149 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 376.5-3 chr11 26226078 26226344 + 2.5 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 37088 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 534-3 chr9 96386039 96386621 + 2.5 NA 3' UTR (NM_153695, exon 5 of 5) 3' UTR (NM_153695, exon 5 of 5) -2619 NM_001286990 11046 Hs.494556 NM_007001 ENSG00000130958 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 member D2 protein-coding 238-13 chr14 86961052 86961331 + 2.5 NA Intergenic MIRb|SINE|MIR 55413 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 694.667 chr18 47215484 47215994 + 2.5 NA intron (NM_001278063, intron 7 of 8) intron (NM_001278063, intron 7 of 8) 35921 NM_001037802 652991 Hs.585834 NM_001037802 ENSG00000215474 SKOR2 CH18515|CORL2|FUSSEL18 SKI family transcriptional corepressor 2 protein-coding 352.5-6 chr15 65443168 65443450 + 2.5 NA non-coding (NR_135486, exon 22 of 22) non-coding (NR_135486, exon 22 of 22) -20362 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 438.5-4 chr14 72405237 72405493 + 2.5 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -111455 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 505.167-2 chr4 64314029 64314425 + 2.5 NA intron (NM_001363796, intron 5 of 11) intron (NM_001363796, intron 5 of 11) 95223 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1301.67 chr8 130802547 130803806 + 2.5 NA intron (NM_001115, intron 14 of 17) intron (NM_001115, intron 14 of 17) 237733 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 464.166-2 chr6 131199816 131200136 + 2.5 NA intron (NM_016377, intron 6 of 7) intron (NM_016377, intron 6 of 7) -50428 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 544.167-7 chr8 140834870 140835221 + 2.5 NA intron (NM_001352746, intron 4 of 30) intron (NM_001352746, intron 4 of 30) -102392 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 469.001-2 chr5 141223017 141223330 + 2.5 NA 5' UTR (NM_018934, exon 1 of 1) 5' UTR (NM_018934, exon 1 of 1) 847 NM_018934 56122 Hs.658497 NM_018934 ENSG00000120327 PCDHB14 PCDH-BETA14 protocadherin beta 14 protein-coding 281-13 chr2 225144677 225144866 + 2.5 NA Intergenic L1M1|LINE|L1 -102303 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 477.333-5 chr16 57244360 57244994 + 2.5 NA promoter-TSS (NM_012106) promoter-TSS (NM_012106) -582 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 546 chr2 225669530 225669785 + 2.5 NA intron (NM_001371273, intron 7 of 7) intron (NM_001371273, intron 7 of 7) 268771 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 349-9 chr14 71240169 71240382 + 2.5 NA Intergenic Intergenic -80201 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 429.667 chr11 32707190 32707451 + 2.5 NA intron (NM_001008391, intron 3 of 17) MER110-int|LTR|ERV1 87338 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 634.167-5 chr9 84954159 84954545 + 2.5 NA intron (NM_001018064, intron 15 of 17) intron (NM_001018064, intron 15 of 17) 248451 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 595.166 chr11 34512645 34513074 + 2.5 NA intron (NM_001422, intron 1 of 6) intron (NM_001422, intron 1 of 6) 935 NM_001422 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 193.333-6 chr10 86966651 86966807 + 2.5 NA Intergenic Intergenic -1753 NM_006829 10974 Hs.642660 NM_006829 ENSG00000148671 ADIRF AFRO|APM2|C10orf116|apM-2 adipogenesis regulatory factor protein-coding 289.667-14 chr20 35104535 35104708 + 2.5 NA Intergenic Charlie9|DNA|hAT-Charlie -11806 NM_199368 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 541-4 chr20 8305431 8305899 + 2.5 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 56961 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 658.5 chr10 109205692 109205995 + 2.5 NA Intergenic Intergenic 717403 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 949.167-3 chr8 23984544 23985216 + 2.5 NA Intergenic LTR88c|LTR|Gypsy? -130074 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 823.167 chr2 197777452 197778501 + 2.5 NA intron (NM_033030, intron 3 of 10) intron (NM_033030, intron 3 of 10) 7343 NM_033030 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 474.167-2 chr14 22695781 22696066 + 2.5 NA Intergenic Intergenic -61079 NM_001348233 79549 NM_001348233 ENSG00000255804 OR6J1 OR6J1P|OR6J2 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding 373.334-7 chr8 123058602 123058814 + 2.5 NA Intergenic Intergenic -13999 NM_001363151 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 782.833-2 chr17 64649010 64649618 + 2.5 NA intron (NM_022739, intron 1 of 18) intron (NM_022739, intron 1 of 18) 12993 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 538-4 chr8 110747802 110748418 + 2.5 NA Intergenic L1MA10|LINE|L1 279323 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 395-3 chr11 65487531 65487874 + 2.5 NA Intergenic Intergenic -10036 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 ncRNA 660.166 chr20 38446160 38446796 + 2.5 NA promoter-TSS (NR_003239) promoter-TSS (NR_003239) -176 NR_003239 128439 Hs.16936 NM_139016 ENSG00000174365 SNHG11 C20orf198|LINC00101|NCRNA00101 small nucleolar RNA host gene 11 ncRNA 243.333-11 chr11 118171776 118171892 + 2.5 NA intron (NM_004588, intron 1 of 3) intron (NM_004588, intron 1 of 3) 4805 NM_004588 6327 Hs.129783 NM_004588 ENSG00000149575 SCN2B ATFB14 sodium voltage-gated channel beta subunit 2 protein-coding 351.333-4 chr17 75784409 75784735 + 2.5 NA promoter-TSS (NR_039892) promoter-TSS (NR_039892) 35 NR_039892 100616282 NR_039892 ENSG00000283853 MIR4738 - microRNA 4738 ncRNA 423.167-3 chr10 69154992 69155265 + 2.5 NA intron (NM_001318944, intron 3 of 9) AluJo|SINE|Alu -25106 NR_136627 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 303.333-6 chr19 4402364 4402601 + 2.5 NA promoter-TSS (NM_005483) promoter-TSS (NM_005483) -158 NM_005483 10036 Hs.79018 NM_005483 ENSG00000167670 CHAF1A CAF-1|CAF1|CAF1B|CAF1P150|P150 chromatin assembly factor 1 subunit A protein-coding 556.501-2 chr17 700728 701137 + 2.5 NA intron (NM_001366254, intron 2 of 19).2 intron (NM_001366254, intron 2 of 19).2 13907 NM_018289 55275 Hs.461819 NM_018289 ENSG00000141252 VPS53 HCCS1|PCH2E|hVps53L|pp13624 VPS53 subunit of GARP complex protein-coding 362.167-11 chr21 33615373 33615714 + 2.5 NA intron (NM_145858, intron 5 of 12) intron (NM_145858, intron 5 of 12) 26198 NM_145858 9946 Hs.352671 NM_145311 ENSG00000205758 CRYZL1 4P11|QOH-1 crystallin zeta like 1 protein-coding 348.333-2 chr1 181274728 181274933 + 2.5 NA Intergenic L1ME1|LINE|L1 38442 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 715.5 chr20 51638854 51639627 + 2.5 NA intron (NM_006045, intron 15 of 27) intron (NM_006045, intron 15 of 27) -76401 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 706.167-2 chr10 6013875 6014295 + 2.5 NA intron (NM_000417, intron 7 of 7) AluJr|SINE|Alu -35344 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 785.499 chr11 134139559 134139994 + 2.5 NA intron (NM_001205329, intron 1 of 7) intron (NM_001205329, intron 1 of 7) 11587 NR_145790 109623486 NR_145790 SNORD153 - small nucleolar RNA, C/D box 153 snoRNA 541.833 chr11 19954045 19954538 + 2.5 NA intron (NM_182964, intron 10 of 37) intron (NM_182964, intron 10 of 37) -68265 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 372.666-9 chr3 179767974 179768176 + 2.5 NA intron (NM_003940, intron 19 of 20) intron (NM_003940, intron 19 of 20) 115035 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 935.166 chr11 66044724 66045620 + 2.5 NA intron (NM_033036, intron 2 of 2) intron (NM_033036, intron 2 of 2) 3989 NM_033036 89792 Hs.208343 NM_033036 ENSG00000175229 GAL3ST3 GAL3ST-3|GAL3ST2 galactose-3-O-sulfotransferase 3 protein-coding 581.667 chr1 61367690 61368088 + 2.5 NA intron (NM_001134673, intron 6 of 10) L2a|LINE|L2 -114371 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 352.5-12 chr5 130198755 130199345 + 2.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 294585 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 211-6 chr10 77251431 77251536 + 2.5 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 99278 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 427.833-7 chr4 48699916 48700277 + 2.5 NA intron (NM_015030, intron 2 of 63) L2c|LINE|L2 80203 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 453.833-2 chr3 10164602 10164889 + 2.5 NA promoter-TSS (NM_001570) promoter-TSS (NM_001570) -174 NM_001570 3656 Hs.449207 NM_001570 ENSG00000134070 IRAK2 IRAK-2 interleukin 1 receptor associated kinase 2 protein-coding 563.333 chr1 81039414 81039962 + 2.5 NA Intergenic Intergenic -266504 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 579.833 chr1 162031308 162031688 + 2.5 NA Intergenic L2|LINE|L2 -7033 NM_001347700 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 1001 chr11 64743074 64743708 + 2.5 NA intron (NM_153819, intron 1 of 16) CpG-4419 751 NM_001098671 10235 Hs.99491 NM_005825 ENSG00000068831 RASGRP2 CALDAG-GEFI|CDC25L RAS guanyl releasing protein 2 protein-coding 541-2 chr12 78146274 78146685 + 2.5 NA intron (NM_001024383, intron 21 of 39) intron (NM_001024383, intron 21 of 39) 213267 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 510-2 chr15 47195936 47196360 + 2.5 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 12059 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 804.667-2 chr16 27605384 27605917 + 2.5 NA intron (NM_015202, intron 2 of 27) intron (NM_015202, intron 2 of 27) 55506 NM_015202 23247 Hs.460459 NM_015202 ENSG00000047578 KIAA0556 JBTS26 KIAA0556 protein-coding 508.666-4 chr15 68158392 68158697 + 2.5 NA intron (NM_016166, intron 7 of 13) L2b|LINE|L2 47566 NM_001286694 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 960.334 chr12 2783880 2784617 + 2.5 NA intron (NR_146317, intron 2 of 3) intron (NR_146317, intron 2 of 3) -10722 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FKBP prolyl isomerase 4 protein-coding 1251.83 chr1 145720783 145722107 + 2.5 NA intron (NM_007053, intron 1 of 5) intron (NM_007053, intron 1 of 5) 1946 NM_007053 11126 Hs.488237 NM_007053 ENSG00000117281 CD160 BY55|NK1|NK28 CD160 molecule protein-coding 271.667-17 chr22 20615577 20615778 + 2.5 NA Intergenic Intergenic -73878 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 546.167 chr1 31185433 31185935 + 2.5 NA intron (NM_024522, intron 2 of 6) MER5B|DNA|hAT-Charlie 54203 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 622.5-2 chr11 65315480 65315813 + 2.5 NA intron (NM_006779, intron 1 of 1) CpG 780 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding 674.001 chr4 121462656 121463173 + 2.5 NA Intergenic Intergenic -81896 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 268.5-12 chr15 71791267 71791512 + 2.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR -19165 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 787.667 chr9 77150705 77151185 + 2.5 NA Intergenic Intergenic -26500 NM_015186 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 1216.83-2 chr3 108661875 108663077 + 2.5 NA intron (NM_014648, intron 21 of 32) intron (NM_014648, intron 21 of 32) 72754 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 403.667-6 chr7 35506254 35506527 + 2.5 NA Intergenic L1MC5a|LINE|L1 188745 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 406-5 chr2 85772331 85772716 + 2.5 NA intron (NM_032827, intron 2 of 2) intron (NM_032827, intron 2 of 2) 11154 NR_106719 102466516 NR_106719 ENSG00000278783 MIR6071 hsa-mir-6071 microRNA 6071 ncRNA 291.667-16 chr8 111416061 111416306 + 2.5 NA intron (NR_146282, intron 2 of 3) L1PA16|LINE|L1 39544 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 797.333 chr19 47436436 47437182 + 2.5 NA intron (NM_015063, intron 8 of 9) intron (NM_015063, intron 8 of 9) -14576 NM_001346148 56917 Hs.380923 NM_020160 ENSG00000105419 MEIS3 MRG2 Meis homeobox 3 protein-coding 585.667-2 chr11 14376502 14377400 + 2.5 NA Intergenic Intergenic -12445 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 425.167 chr1 113947977 113948335 + 2.5 NA intron (NM_198268, intron 2 of 15) intron (NM_198268, intron 2 of 15) -2989 NM_198269 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 258-38 chr8 120606192 120606301 + 2.5 NA intron (NM_021021, intron 3 of 6) (TA)n|Simple_repeat|Simple_repeat -155007 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 383.999-2 chr2 114088241 114088498 + 2.5 NA Intergenic Tigger12A|DNA|TcMar-Tigger -108385 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 657.833 chr17 7045720 7046354 + 2.5 NA Intergenic Intergenic -1945 NM_001370549 162515 Hs.336564 NM_153357 ENSG00000174326 SLC16A11 MCT 11|MCT11 solute carrier family 16 member 11 protein-coding 626.5 chr6 137094522 137094949 + 2.5 NA Intergenic Intergenic -49555 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 550.667-3 chr4 156324217 156324496 + 2.5 NA Intergenic Intergenic -370490 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 424.167-3 chr3 165254698 165255184 + 2.5 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 47981 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 250.667-9 chr14 60984183 60984594 + 2.5 NA intron (NR_033344, intron 2 of 16) intron (NR_033344, intron 2 of 16) -2698 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 324.166 chr10 47312149 47312548 + 2.5 NA intron (NM_004962, intron 2 of 2) intron (NM_004962, intron 2 of 2) -10106 NM_016204 2658 Hs.279463 NM_016204 ENSG00000263761 GDF2 BMP-9|BMP9|HHT5 growth differentiation factor 2 protein-coding 1373.5 chr12 45727586 45728970 + 2.5 NA promoter-TSS (NR_028408) promoter-TSS (NR_028408) -357 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 645.167 chr11 11789694 11790141 + 2.5 NA Intergenic L1MC4a|LINE|L1 -6695 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 645.167-3 chr4 189202491 189203080 + 2.5 NA Intergenic Intergenic 426128 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 325-2 chr10 88810230 88810489 + 2.5 NA intron (NM_001128215, intron 2 of 8) intron (NM_001128215, intron 2 of 8) 7629 NM_001128215 340654 Hs.55118 NM_001128215 ENSG00000173239 LIPM LIPL3|bA304I5.1 lipase family member M protein-coding 1100.67 chr1 165073210 165074357 + 2.5 NA Intergenic MER20B|DNA|hAT-Charlie 282458 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 713.334 chr1 156607886 156608494 + 2.5 NA Intergenic Intergenic -6703 NM_182679 54865 Hs.193832 NM_015590 ENSG00000160818 GPATCH4 GPATC4 G-patch domain containing 4 protein-coding 1023-4 chr8 137331931 137333212 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 81017 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 289.167-10 chr17 60938618 60938919 + 2.5 NA intron (NM_001330413, intron 13 of 25) L1ME2|LINE|L1 260917 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 420.167 chr1 53485399 53485747 + 2.5 NA Intergenic Intergenic 26174 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 497.166-2 chr2 157775490 157776052 + 2.5 NA intron (NM_001111067, intron 5 of 10) intron (NM_001111067, intron 5 of 10) 62859 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 470.5-4 chr18 3258987 3259438 + 2.5 NA intron (NR_130144, intron 1 of 2) MIR|SINE|MIR 2606 NR_130144 104968399 Hs.464472 NR_130143 ENSG00000264235 LOC104968399 - uncharacterized LOC104968399 ncRNA 441.833-6 chr5 16934191 16934448 + 2.5 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 1969 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 427-9 chr4 77602870 77603190 + 2.5 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 91277 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 901.333 chr11 44538194 44538928 + 2.5 NA Intergenic Intergenic -27102 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 377.667-7 chr5 140791777 140792071 + 2.5 NA intron (NM_018900, intron 1 of 3) intron (NM_018900, intron 1 of 3) -2928 NM_031495 56146 Hs.199343 NM_018905 ENSG00000204969 PCDHA2 PCDH-ALPHA2 protocadherin alpha 2 protein-coding 340.666-6 chr6 46419492 46419759 + 2.5 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) 71698 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 1102-2 chr12 110936498 110937729 + 2.5 NA intron (NR_036513, intron 1 of 1) intron (NR_036513, intron 1 of 1) 511 NR_036513 100131138 Hs.152129 NR_036513 ENSG00000185847 LINC01405 - long intergenic non-protein coding RNA 1405 ncRNA 436.167-9 chr8 113445230 113445444 + 2.5 NA Intergenic AluSx1|SINE|Alu -8398 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 786.332 chr8 77605843 77606606 + 2.5 NA Intergenic L1PA17|LINE|L1 155527 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 541.167-2 chr3 148309009 148309621 + 2.5 NA intron (NR_146712, intron 2 of 4) MLT1H1|LTR|ERVL-MaLR 28424 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 583.333-3 chr13 62319738 62320384 + 2.5 NA Intergenic Intergenic -1244 NR_149075 106144607 Hs.562580 NR_149075 ENSG00000227611 LINC01074 - long intergenic non-protein coding RNA 1074 ncRNA 767.167-2 chr13 31431226 31431889 + 2.5 NA Intergenic Intergenic 231582 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 720.333 chr11 34371374 34372136 + 2.5 NA Intergenic Intergenic -13745 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 810.334 chr17 6421876 6422423 + 2.5 NA Intergenic Intergenic 12972 NM_001285403 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 564 chr1 204476791 204477109 + 2.5 NA intron (NM_002646, intron 2 of 33) L1MC4|LINE|L1 13396 NM_002646 5287 Hs.497487 NM_002646 ENSG00000133056 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding 502.833-5 chr8 114789377 114789826 + 2.5 NA Intergenic Intergenic 878412 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 434.333 chr1 108559767 108560100 + 2.5 NA promoter-TSS (NM_001010883) promoter-TSS (NM_001010883) -167 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 421.166-2 chr4 158253287 158253502 + 2.5 NA intron (NM_018342, intron 12 of 12) intron (NM_018342, intron 12 of 12) 42908 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 319.833-8 chr2 214690113 214690355 + 2.5 NA Intergenic L1M4|LINE|L1 119449 NM_000465 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 508.5 chr11 15826779 15827402 + 2.5 NA Intergenic Intergenic 142531 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 323.5-13 chr4 95506301 95506622 + 2.5 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 42512 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 1166.5-2 chr17 59316650 59317511 + 2.5 NA Intergenic Intergenic -14575 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 837.166-2 chr3 15118371 15119159 + 2.5 NA Intergenic Intergenic -19608 NR_126155 64145 Hs.475565 NM_022340 ENSG00000131381 RBSN Rabenosyn-5|ZFYVE20 rabenosyn, RAB effector protein-coding 767.833-2 chr14 49634050 49634713 + 2.5 NA exon (NM_018139, exon 1 of 3) exon (NM_018139, exon 1 of 3) 849 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 425.333-3 chr6 151702378 151702642 + 2.5 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) 12014 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 432.5-3 chr2 69376599 69376792 + 2.5 NA intron (NM_002056, intron 1 of 18) intron (NM_002056, intron 1 of 18) 10532 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 760.167 chr1 197327580 197328398 + 2.5 NA intron (NM_001257965, intron 3 of 14) intron (NM_001257965, intron 3 of 14) 59737 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 810.001 chr19 9796064 9796670 + 2.5 NA Intergenic MER66C|LTR|ERV1 -3187 NR_148545 100505555 Hs.445295 NR_148545 ENSG00000196605 LOC100505555 - uncharacterized LOC100505555 ncRNA 465.333-3 chr15 63704106 63704456 + 2.5 NA intron (NM_003922, intron 25 of 77) intron (NM_003922, intron 25 of 77) -103454 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 464.5-8 chr7 64625660 64625884 + 2.5 NA Intergenic LTR9C|LTR|ERV1 -40311 NM_001282360 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 496.5-4 chr8 83821706 83822011 + 2.5 NA Intergenic Intergenic -360929 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 540.001 chr13 51125619 51125983 + 2.5 NA intron (NR_102431, intron 1 of 4) intron (NR_102431, intron 1 of 4) -14573 NM_001351589 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 550 chr10 95236440 95236932 + 2.5 NA TTS (NM_020992) TTS (NM_020992) 42486 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 300.833-2 chr12 7190718 7190885 + 2.5 NA intron (NM_001131023, intron 2 of 15) MIRc|SINE|MIR 439 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 683.001-2 chr8 117549789 117550487 + 2.5 NA Intergenic Intergenic 29425 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 499-3 chr5 175880312 175880690 + 2.5 NA 3' UTR (NM_006650, exon 5 of 5) 3' UTR (NM_006650, exon 5 of 5) 8923 NM_001008220 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 729.667 chr10 16115969 16116933 + 2.5 NA Intergenic MIR3|SINE|MIR -255918 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 1355 chr6 128725111 128726118 + 2.5 NA Intergenic Intergenic -157524 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 379.666-4 chr4 36171613 36171809 + 2.5 NA intron (NR_146894, intron 9 of 32) MIR|SINE|MIR 72228 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 370.5-3 chr1 240050352 240050599 + 2.5 NA Intergenic Intergenic -41408 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 365.834-3 chr5 148145631 148146254 + 2.5 NA Intergenic Intergenic -22604 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 181.167-5 chr1 233196973 233197045 + 2.5 NA intron (NM_014801, intron 15 of 33) L1ME1|LINE|L1 98716 NM_001328607 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 451.5-2 chr8 73065134 73065471 + 2.5 NA 3' UTR (NM_153225, exon 5 of 5) 3' UTR (NM_153225, exon 5 of 5) 27870 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 754.334-2 chr16 85818959 85819614 + 2.5 NA Intergenic Intergenic 19591 NM_001318788 1327 Hs.433419 NM_001861 ENSG00000131143 COX4I1 COX IV-1|COX4|COX4-1|COXIV|COXIV-1 cytochrome c oxidase subunit 4I1 protein-coding 391.667-3 chr4 53423351 53423559 + 2.5 NA intron (NM_001134937, intron 10 of 17) intron (NM_001134937, intron 10 of 17) 45802 NM_001134938 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 541.5-2 chr12 122526388 122527187 + 2.5 NA promoter-TSS (NM_014708) promoter-TSS (NM_014708) 149 NM_023012 65117 Hs.432996 NM_023012 ENSG00000111011 RSRC2 - arginine and serine rich coiled-coil 2 protein-coding 193.5-51 chr9 9897203 9897418 + 2.5 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) 97918 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 883.667-2 chr3 59211906 59212596 + 2.5 NA Intergenic Intergenic -162219 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 348.5-2 chr10 19152521 19152731 + 2.5 NA intron (NM_001142308, intron 11 of 39) intron (NM_001142308, intron 11 of 39) 103825 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 419 chr10 90863142 90863352 + 2.5 NA Intergenic Intergenic -5208 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 381.334-5 chr6 41320353 41320809 + 2.5 NA Intergenic LTR18C|LTR|ERVL -15027 NM_001199509 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 695 chr12 113912864 113913360 + 2.5 NA intron (NM_001146698, intron 21 of 24) intron (NM_001146698, intron 21 of 24) 53213 NM_001146698 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 321.833-11 chrX 81171823 81172043 + 2.5 NA intron (NM_030763, intron 1 of 6) intron (NM_030763, intron 1 of 6) 29980 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 331.667-6 chr13 35511677 35511868 + 2.5 NA intron (NM_001204197, intron 1 of 17) intron (NM_001204197, intron 1 of 17) 35023 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 346.666 chr3 178325563 178325821 + 2.5 NA Intergenic Intergenic -93509 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 547.333 chr5 33078587 33079199 + 2.5 NA Intergenic Intergenic 131450 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 785.333-2 chr16 68263906 68264477 + 2.5 NA promoter-TSS (NM_001076785) promoter-TSS (NM_001076785) -335 NM_001076785 9057 Hs.679580 NM_003983 ENSG00000103064 SLC7A6 LAT-2|LAT3|y+LAT-2 solute carrier family 7 member 6 protein-coding 625.667-3 chr6 37059219 37059693 + 2.5 NA Intergenic Intergenic 53801 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 387.5-4 chr17 48258982 48259298 + 2.5 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -35207 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 822.666 chr7 18355944 18356602 + 2.5 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 66181 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 545.667-4 chr7 43700196 43700696 + 2.5 NA intron (NR_163914, intron 1 of 8) intron (NR_163914, intron 1 of 8) 29077 NM_001371309 859.5 chr3 102673017 102674109 + 2.5 NA Intergenic Intergenic 238548 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 593.501 chr4 154560672 154561121 + 2.5 NA Intergenic MIRb|SINE|MIR -2084 NM_005141 2244 Hs.300774 NM_005141 ENSG00000171564 FGB HEL-S-78p fibrinogen beta chain protein-coding 407.501 chr10 33306485 33306710 + 2.5 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 28070 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 571.667-3 chr3 149340210 149340630 + 2.5 NA Intergenic Intergenic -6784 NM_138786 116441 Hs.22026 NM_138786 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 644.666-2 chr5 142151556 142152453 + 2.5 NA 3' UTR (NM_030571, exon 8 of 8) 3' UTR (NM_030571, exon 8 of 8) 43225 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 421.334-7 chr8 86200142 86200409 + 2.5 NA Intergenic Intergenic 30106 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 444.5-3 chr11 66638382 66638781 + 2.5 NA promoter-TSS (NM_001198844) promoter-TSS (NM_001198844) -36 NM_002896 5936 Hs.523822 NM_002896 ENSG00000173933 RBM4 LARK|RBM4A|ZCCHC21|ZCRB3A RNA binding motif protein 4 protein-coding 335-14 chr8 126822902 126823352 + 2.5 NA Intergenic Intergenic -190027 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 371.5-6 chr18 1122734 1122972 + 2.5 NA Intergenic Intergenic -194860 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 334.667-5 chr16 80936689 80936873 + 2.5 NA Intergenic Intergenic -44185 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 524.667 chr11 29432474 29432825 + 2.5 NA Intergenic Intergenic -161764 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 407.333-7 chr6 158072316 158072756 + 2.5 NA intron (NM_003898, intron 15 of 26) intron (NM_003898, intron 15 of 26) 55443 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 744.834 chr8 30170135 30170623 + 2.5 NA intron (NM_006571, intron 2 of 6) intron (NM_006571, intron 2 of 6) 14010 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 799.667 chr10 91912724 91913511 + 2.5 NA Intergenic Intergenic -3631 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 188.5-49 chr7 80095696 80095789 + 2.5 NA Intergenic Intergenic -39089 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 472.833-4 chr6 132529695 132530358 + 2.5 NA Intergenic MER57-int|LTR|ERV1 -8262 NM_175057 134860 Hs.434116 NM_175057 ENSG00000237110 TAAR9 TA3|TAR3|TAR9|TRAR3 trace amine associated receptor 9 (gene/pseudogene) protein-coding 904.001 chr8 13544541 13545513 + 2.5 NA intron (NM_001348082, intron 1 of 16) L2a|LINE|L2 -21842 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 261.5-12 chr11 102378076 102378310 + 2.5 NA 3' UTR (NM_001256166, exon 9 of 9) 3' UTR (NM_001256166, exon 9 of 9) 30819 NM_001256163 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 636.833 chr17 8041300 8041799 + 2.5 NA intron (NM_001039130, intron 3 of 12) intron (NM_001039130, intron 3 of 12) 2490 NM_001039131 247 Hs.111256 NM_001141 ENSG00000179593 ALOX15B 15-LOX-2 arachidonate 15-lipoxygenase type B protein-coding 1047.67-2 chr5 128498741 128499821 + 2.5 NA intron (NM_001999, intron 5 of 64) intron (NM_001999, intron 5 of 64) 38964 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 668 chr13 20359077 20359711 + 2.5 NA Intergenic L1MB7|LINE|L1 74452 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 260.5 chr1 248610165 248610309 + 2.5 NA Intergenic Intergenic -16469 NM_001004693 127069 Hs.553585 NM_001004693 ENSG00000184022 OR2T10 OR1-64 olfactory receptor family 2 subfamily T member 10 protein-coding 893 chr18 27004426 27004893 + 2.5 NA intron (NM_031422, intron 4 of 5) intron (NM_031422, intron 4 of 5) -138856 NM_001317384 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 1165.83 chr8 144466890 144467914 + 2.5 NA intron (NM_001369769, intron 4 of 17) intron (NM_001369769, intron 4 of 17) 1065 NM_001369769 90990 Hs.528713 NM_145754 ENSG00000167702 KIFC2 - kinesin family member C2 protein-coding 514.5 chr15 76826800 76827142 + 2.5 NA intron (NR_148227, intron 5 of 32) intron (NR_148227, intron 5 of 32) 34973 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 353.334-12 chr8 137953135 137953344 + 2.5 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 130306 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 533.499 chr12 59557446 59557808 + 2.5 NA Intergenic L3|LINE|CR1 -38402 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 391.667-4 chr9 97897776 97897967 + 2.5 NA Intergenic AluJo|SINE|Alu 24699 NM_016481 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 321-11 chr2 166666364 166666523 + 2.5 NA Intergenic L2a|LINE|L2 -179472 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 499.5-3 chr8 99356821 99357339 + 2.5 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 179650 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 383-4 chr16 67277214 67277449 + 2.5 NA promoter-TSS (NM_001129727) promoter-TSS (NM_001129727) -831 NM_001129727 25894 Hs.188781 NM_015432 ENSG00000196155 PLEKHG4 ARHGEF44|PRTPHN1|SCA4 pleckstrin homology and RhoGEF domain containing G4 protein-coding 370.667-5 chr20 43410458 43410961 + 2.5 NA Intergenic L1P4|LINE|L1 -47187 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 339.667-14 chr2 109516321 109516618 + 2.5 NA Intergenic Intergenic 97198 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 351.667-16 chr8 103407094 103407364 + 2.5 NA intron (NR_102338, intron 3 of 7) intron (NR_102338, intron 3 of 7) 7878 NM_030780 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 509.167 chr7 33982467 33982983 + 2.5 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 77186 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 1080.5 chr17 48260980 48261895 + 2.5 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -32910 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 995.832 chr5 126780173 126781055 + 2.5 NA intron (NR_134488, intron 1 of 11) intron (NR_134488, intron 1 of 11) 3478 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 553-3 chr10 117089299 117089783 + 2.5 NA intron (NM_001258300, intron 1 of 17) L1MB2|LINE|L1 37045 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 876.833-2 chr13 29472333 29473337 + 2.5 NA intron (NM_015233, intron 2 of 8) L1ME4c|LINE|L1 14915 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 930.667 chr11 2532797 2533892 + 2.5 NA intron (NM_181798, intron 2 of 15) intron (NM_181798, intron 2 of 15) 71890 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 344.167-8 chr2 164781190 164781396 + 2.5 NA intron (NM_001365670, intron 2 of 13) intron (NM_001365670, intron 2 of 13) -59456 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 1007.5 chr5 181167348 181168387 + 2.5 NA Intergenic L1MD2|LINE|L1 12924 NM_206880 285659 Hs.553681 NM_206880 ENSG00000182613 OR2V2 OR2V3|OST713 olfactory receptor family 2 subfamily V member 2 protein-coding 784.667-4 chr4 56424744 56425575 + 2.5 NA intron (NR_156493, intron 1 of 10) intron (NR_156493, intron 1 of 10) 10456 NR_156493 5471 Hs.331420 NM_002703 ENSG00000128059 PPAT ATASE|GPAT|PRAT phosphoribosyl pyrophosphate amidotransferase protein-coding 364.167-7 chr8 64582699 64582951 + 2.5 NA promoter-TSS (NR_152770) promoter-TSS (NR_152770) -933 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 343.833-4 chr15 71093543 71093778 + 2.5 NA Intergenic Intergenic -47789 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 236.333-16 chr2 201471478 201471608 + 2.5 NA intron (NM_018571, intron 4 of 11) MIRb|SINE|MIR 19803 NM_001206864 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 332.5-12 chr6 6221518 6221761 + 2.5 NA intron (NM_000129, intron 8 of 14) MIRb|SINE|MIR -52204 NR_107007 102466866 NR_107007 ENSG00000263572 MIR7853 hsa-mir-7853 microRNA 7853 ncRNA 324.833-4 chr3 85239965 85240152 + 2.5 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -145652 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 644.334 chr16 34588059 34588401 + 2.5 NA Intergenic Intergenic -206750 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 351.5-4 chr14 47408481 47408875 + 2.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -65432 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 426.333-9 chrX 139559676 139560301 + 2.5 NA intron (NM_000133, intron 6 of 7) intron (NM_000133, intron 6 of 7) 29252 NM_000133 2158 Hs.522798 NM_000133 ENSG00000101981 F9 F9 p22|FIX|HEMB|P19|PTC|THPH8 coagulation factor IX protein-coding 358.5-13 chr8 83523387 83523716 + 2.5 NA Intergenic Intergenic 119793 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 814.5-2 chr4 107756049 107756849 + 2.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -36215 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 329.834-3 chr13 44917072 44917447 + 2.5 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat 72212 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 320-9 chr2 63599161 63599316 + 2.5 NA exon (NM_001199112, exon 4 of 8) exon (NM_001199112, exon 4 of 8) 10087 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 385.833 chr1 151997232 151997542 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -3528 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 515-3 chr19 55461643 55461966 + 2.5 NA promoter-TSS (NM_024710) promoter-TSS (NM_024710) -162 NM_001136201 79763 Hs.467306 NM_024710 ENSG00000063241 ISOC2 - isochorismatase domain containing 2 protein-coding 383-9 chr6 36072934 36073232 + 2.5 NA intron (NM_139012, intron 4 of 11) L1MC5|LINE|L1 45275 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 1047 chr19 56350208 56350856 + 2.5 NA intron (NM_001322072, intron 2 of 6) intron (NM_001322072, intron 2 of 6) -17567 NR_003127 147947 Hs.467326 NM_194319 ENSG00000240225 ZNF542P ZNF542 zinc finger protein 542, pseudogene pseudo 599.166 chr8 79062299 79062712 + 2.5 NA Intergenic Intergenic 224976 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 591.5-3 chr2 173652495 173652974 + 2.5 NA Intergenic Intergenic 297862 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 427.5-6 chr8 83734743 83735010 + 2.5 NA Intergenic Intergenic 331118 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 592-2 chr3 39707106 39707527 + 2.5 NA Intergenic Intergenic -101598 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 453.334 chr2 33526735 33527060 + 2.5 NA intron (NM_015376, intron 8 of 16) MIRc|SINE|MIR 13022 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 454.5-3 chr17 48074566 48074768 + 2.5 NA intron (NM_006807, intron 4 of 4) intron (NM_006807, intron 4 of 4) 26308 NM_001330262 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 1090.67-4 chr6 149560354 149561064 + 2.5 NA Intergenic L1MA4A|LINE|L1 -5666 NM_138785 116254 Hs.438872 NM_138785 ENSG00000055211 GINM1 C6orf72 glycoprotein integral membrane 1 protein-coding 410.5-4 chr8 78440918 78441148 + 2.5 NA Intergenic Intergenic -75307 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 284.833-12 chr3 189959611 189959787 + 2.5 NA intron (NM_018192, intron 14 of 14) L2a|LINE|L2 129777 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 369.333-4 chr3 105413803 105414032 + 2.5 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 47008 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 311.333-25 chr8 121483741 121483963 + 2.5 NA Intergenic L1MA8|LINE|L1 -155494 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 612-5 chrX 54639439 54640021 + 2.5 NA Intergenic CpG 109511 NM_001184819 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 665.834-2 chr8 50398300 50398926 + 2.5 NA intron (NR_135797, intron 3 of 20) intron (NR_135797, intron 3 of 20) 234482 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 1377.83 chr12 3202573 3203572 + 2.5 NA intron (NM_001168320, intron 2 of 7) intron (NM_001168320, intron 2 of 7) 125693 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 391-4 chr2 113965794 113966343 + 2.5 NA Intergenic Intergenic -3254 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 522.167 chr1 67532352 67532881 + 2.5 NA Intergenic Intergenic -102214 NM_001018067 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 393.5-11 chr7 34472961 34473181 + 2.5 NA intron (NR_033665, intron 2 of 3) L1MC3|LINE|L1 -185147 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 1083.5-2 chr5 133423509 133424253 + 2.5 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 3825 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 688.167 chr1 226125081 226125612 + 2.5 NA Intergenic Intergenic -22657 NR_146443 107985353 Hs.735455 NR_146443 ENSG00000234478 ACBD3-AS1 - ACBD3 antisense RNA 1 ncRNA 421-3 chr14 63726536 63726904 + 2.5 NA intron (NM_030791, intron 1 of 2).2 intron (NM_030791, intron 1 of 2).2 1345 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 243.833-17 chr21 31411176 31411293 + 2.5 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -66880 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 498.334-3 chr6 14055752 14056007 + 2.5 NA Intergenic Intergenic -61377 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 588.833-2 chr21 30437483 30437861 + 2.5 NA Intergenic Intergenic -2607 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 684.668 chr1 174262558 174263110 + 2.5 NA intron (NM_001366445, intron 7 of 13) LTR41B|LTR|ERVL -12266 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 365.5-6 chr13 75372394 75372650 + 2.5 NA intron (NM_001286658, intron 1 of 19) AluSx1|SINE|Alu 109646 NM_001286659 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 357.5-8 chr3 117527255 117527504 + 2.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 163546 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 502-3 chr5 150772857 150773132 + 2.5 NA Intergenic L1MB8|LINE|L1 -4952 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 245.833-7 chr11 61446228 61446386 + 2.5 NA 3' UTR (NM_017841, exon 4 of 4) 3' UTR (NM_017841, exon 4 of 4) 16182 NM_017841 54949 Hs.313247 NM_017841 ENSG00000167985 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 657-3 chr4 15231471 15232077 + 2.5 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) -108214 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 540.166 chrX 69493095 69493386 + 2.5 NA Intergenic Intergenic -11995 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 436.833 chr1 150486979 150487460 + 2.5 NA promoter-TSS (NM_025150) promoter-TSS (NM_025150) -200 NM_001271896 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 915.499 chr2 83196419 83197156 + 2.5 NA Intergenic Intergenic -326027 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 452.999 chr12 108237258 108237824 + 2.5 NA intron (NM_001304447, intron 8 of 9) MamTip3|DNA|hAT-Tip100 83121 NM_001142345 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 524-3 chr7 32115651 32116110 + 2.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -44444 NM_001322055 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 743.167 chr10 60208510 60209101 + 2.5 NA intron (NM_001204403, intron 10 of 43) intron (NM_001204403, intron 10 of 43) -67789 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 539.834 chr1 6719946 6720403 + 2.5 NA Intergenic Intergenic -4571 NR_104620 100505887 Hs.250839 NR_104620 LINC01672 NMR long intergenic non-protein coding RNA 1672 ncRNA 644.333-3 chr6 164646028 164646316 + 2.5 NA Intergenic MIRb|SINE|MIR 175891 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 426.167-11 chr7 77397078 77397408 + 2.5 NA intron (NR_146937, intron 4 of 31) intron (NR_146937, intron 4 of 31) -17955 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 237.166-12 chrX 126982836 126982948 + 2.5 NA Intergenic Intergenic 163163 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 485.333-5 chr2 218861084 218861421 + 2.5 NA intron (NM_006522, intron 1 of 3) intron (NM_006522, intron 1 of 3) 1447 NM_006522 7475 Hs.29764 NM_006522 ENSG00000115596 WNT6 - Wnt family member 6 protein-coding 877.666 chr7 117458881 117459991 + 2.5 NA Intergenic Intergenic -20527 NM_000492 1080 Hs.489786 NM_000492 ENSG00000001626 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 CF transmembrane conductance regulator protein-coding 508-3 chr3 5806131 5806414 + 2.5 NA Intergenic Intergenic -556017 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 347.5-5 chr18 21494726 21494948 + 2.5 NA intron (NM_001142966, intron 19 of 32) intron (NM_001142966, intron 19 of 32) 105867 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 687.334 chr2 26087809 26088283 + 2.5 NA intron (NM_016131, intron 1 of 5) intron (NM_016131, intron 1 of 5) 53962 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 753-2 chr5 170099858 170100515 + 2.5 NA Intergenic Intergenic -5711 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 1186.33 chr9 115524330 115525195 + 2.5 NA Intergenic MIRb|SINE|MIR 219477 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 561.333 chr10 98269263 98269672 + 2.5 NA Intergenic Intergenic -1273 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 699.334 chr19 41753102 41753583 + 2.5 NA Intergenic Intergenic -2188 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 175.666-4 chr20 50740413 50740510 + 2.5 NA intron (NM_032521, intron 2 of 2) intron (NM_032521, intron 2 of 2) 8881 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 441.5-5 chr4 122309866 122310393 + 2.5 NA intron (NM_015312, intron 57 of 83) intron (NM_015312, intron 57 of 83) -68882 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 547.5-4 chr3 88004376 88004792 + 2.5 NA Intergenic Intergenic 22008 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 582.834 chr11 122781367 122781838 + 2.5 NA intron (NM_001363365, intron 4 of 13) intron (NM_001363365, intron 4 of 13) -56898 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 686.166 chr4 60880982 60881488 + 2.5 NA Intergenic Intergenic -41384 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 657.5-2 chr6 50254511 50255068 + 2.5 NA Intergenic L2a|LINE|L2 -204860 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 725.667 chr10 111756234 111756862 + 2.5 NA Intergenic Intergenic 427217 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 427.167-5 chr11 76823838 76824035 + 2.5 NA Intergenic MIRc|SINE|MIR 32184 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 331.667-4 chr10 70405305 70405788 + 2.5 NA intron (NM_004096, intron 1 of 2) intron (NM_004096, intron 1 of 2) 1401 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 480.667 chr11 68271048 68271311 + 2.5 NA intron (NM_022338, intron 1 of 3) intron (NM_022338, intron 1 of 3) 794 NM_001300913 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 359-5 chr12 78787718 78787890 + 2.5 NA Intergenic L1MEg1|LINE|L1 -76178 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 514.167-3 chr8 96328145 96328413 + 2.5 NA intron (NM_014754, intron 10 of 12) intron (NM_014754, intron 10 of 12) 58369 NR_125829 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 667.834 chr10 31770265 31770717 + 2.5 NA Intergenic Charlie7|DNA|hAT-Charlie 138435 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 605.5-2 chr5 148741677 148742198 + 2.5 NA Intergenic L1PA15|LINE|L1 -84656 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 257.666-2 chr12 61764059 61764190 + 2.5 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 428715 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 536-3 chr11 68297662 68298148 + 2.5 NA Intergenic Intergenic -14686 NM_002335 4041 Hs.6347 NM_002335 ENSG00000162337 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2 LDL receptor related protein 5 protein-coding 504.666-5 chr6 155562452 155562907 + 2.5 NA Intergenic L1ME1|LINE|L1 47835 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 350.334-13 chr6 127575799 127575992 + 2.5 NA Intergenic Intergenic -1279 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 396.667-3 chr16 60490762 60490946 + 2.5 NA Intergenic Intergenic -131061 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 882.834 chr10 101467232 101467936 + 2.5 NA intron (NM_003939, intron 2 of 13) intron (NM_003939, intron 2 of 13) 113419 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 513.167-5 chr2 25078109 25078733 + 2.5 NA intron (NM_001319099, intron 1 of 22) intron (NM_001319099, intron 1 of 22) 35958 NM_001319099 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 795.333 chr18 36095546 36096175 + 2.5 NA Intergenic L1MC5|LINE|L1 -28266 NM_001303413 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 975.833 chr11 114339983 114340711 + 2.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 39692 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 874.167 chr7 141014654 141015338 + 2.5 NA promoter-TSS (NM_016071) promoter-TSS (NM_016071) -44 NM_053035 51650 Hs.416207 NM_016071 ENSG00000090263 MRPS33 CGI-139|MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 394.5-11 chrX 76763104 76763325 + 2.5 NA intron (NR_110400, intron 1 of 3) L1MA4A|LINE|L1 156146 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 755-2 chr11 3609484 3610128 + 2.5 NA Intergenic Intergenic -16654 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel subfamily C member 2 (pseudogene) pseudo 215.5-9 chr2 184204598 184204756 + 2.5 NA Intergenic Intergenic -174298 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 305.5-2 chr1 75049095 75049237 + 2.5 NA Intergenic L1MA1|LINE|L1 -79268 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 1069 chr22 34111061 34111663 + 2.5 NA Intergenic Intergenic -188474 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 489.834-4 chr5 32076705 32077127 + 2.5 NA intron (NM_178140, intron 18 of 24) intron (NM_178140, intron 18 of 24) 97403 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 689.833-4 chr22 36757533 36758154 + 2.5 NA TTS (NM_001363003) TTS (NM_001363003) 18276 NR_033531 11020 Hs.415172 NM_006860 ENSG00000100360 IFT27 BBS19|RABL4|RAYL intraflagellar transport 27 protein-coding 1198.33 chr1 157579951 157580623 + 2.5 NA intron (NM_031282, intron 8 of 11) intron (NM_031282, intron 8 of 11) 17798 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 467-4 chr14 47143406 47143653 + 2.5 NA intron (NM_001113498, intron 4 of 16) intron (NM_001113498, intron 4 of 16) 199717 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 435-3 chr7 40047572 40047829 + 2.5 NA intron (NM_003718, intron 6 of 13) intron (NM_003718, intron 6 of 13) 86922 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 284.5-18 chr5 112816164 112816366 + 2.5 NA intron (NM_001354902, intron 8 of 14) intron (NM_001354902, intron 8 of 14) -44923 NM_001204193 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 260.167-6 chr11 22829932 22830289 + 2.5 NA promoter-TSS (NR_135213) promoter-TSS (NR_135213) -309 NM_001320341 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 363.5-2 chr10 60664762 60664950 + 2.5 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) 68672 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 764 chr12 6278571 6279467 + 2.5 NA Intergenic Intergenic -31417 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 839 chr6 22828320 22828903 + 2.5 NA Intergenic Intergenic -110687 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 471-8 chr9 33293586 33293817 + 2.5 NA intron (NM_002504, intron 1 of 23) intron (NM_002504, intron 1 of 23) 3185 NM_002504 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 584.501 chr5 31839103 31839732 + 2.5 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) 96742 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 608.167-3 chr2 121356240 121356655 + 2.5 NA intron (NM_015282, intron 36 of 38) intron (NM_015282, intron 36 of 38) -71245 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 491.501 chr2 9771548 9771913 + 2.5 NA Intergenic Intergenic -71712 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 511.5 chr10 25757896 25758113 + 2.5 NA Intergenic Intergenic 106292 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 635.667 chr1 20639928 20640543 + 2.5 NA intron (NM_032409, intron 3 of 7) intron (NM_032409, intron 3 of 7) 6556 NR_106732 102464833 NR_106732 ENSG00000284005 MIR6084 hsa-mir-6084 microRNA 6084 ncRNA 426.5-5 chr2 202479671 202479995 + 2.5 NA intron (NM_001204, intron 3 of 12) L1M4|LINE|L1 103506 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 773.833-2 chr19 46614090 46614723 + 2.5 NA Intergenic Intergenic 10683 NM_000960 5739 Hs.458324 NM_000960 ENSG00000160013 PTGIR IP|PRIPR prostaglandin I2 receptor protein-coding 213.167-5 chr12 116916871 116917058 + 2.5 NA intron (NM_153348, intron 1 of 10) intron (NM_153348, intron 1 of 10) 6008 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 318-22 chrX 79352276 79352528 + 2.5 NA Intergenic ERVL-int|LTR|ERVL 14932 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 697.667-4 chr20 9912841 9913465 + 2.5 NA Intergenic MER5A|DNA|hAT-Charlie -73180 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 440.333-6 chr5 36122956 36123214 + 2.5 NA intron (NM_001007527, intron 7 of 17) intron (NM_001007527, intron 7 of 17) 24903 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 555.334-2 chr3 50550017 50550328 + 2.5 NA Intergenic L2c|LINE|L2 17575 NM_001171743 51161 Hs.517860 NM_016210 ENSG00000088543 C3orf18 G20 chromosome 3 open reading frame 18 protein-coding 464.834-4 chr7 114601258 114601520 + 2.5 NA intron (NM_148898, intron 4 of 17) L1MC2|LINE|L1 -51956 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 528.834-2 chr14 76386936 76387583 + 2.5 NA intron (NM_004452, intron 1 of 10) intron (NM_004452, intron 1 of 10) 15912 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 1106.5-4 chr17 62065720 62066548 + 2.5 NA promoter-TSS (NM_005121) promoter-TSS (NM_005121) -856 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 267.167-7 chr20 54200136 54200296 + 2.5 NA Intergenic Intergenic -7871 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 570.333-2 chr14 71055281 71055715 + 2.5 NA intron (NM_014982, intron 24 of 35) intron (NM_014982, intron 24 of 35) 148039 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 525.167-2 chr1 233366329 233366584 + 2.5 NA intron (NM_032435, intron 5 of 9) L1MA5|LINE|L1 38732 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 483.667-3 chr20 62500065 62500318 + 2.5 NA Intergenic Intergenic -24196 NM_080473 140628 Hs.352250 NM_080473 ENSG00000130700 GATA5 CHTD5|GATAS|bB379O24.1 GATA binding protein 5 protein-coding 291.833-5 chr13 109331166 109331424 + 2.5 NA Intergenic Intergenic -69401 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 879.833-3 chr22 26172040 26172839 + 2.5 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 2965 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 748.5 chr2 202588321 202588877 + 2.5 NA Intergenic L1PA17|LINE|L1 -46370 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 470.834-3 chr16 46394226 46394586 + 2.5 NA Intergenic Intergenic 174691 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 324-19 chr5 157337061 157337268 + 2.5 NA intron (NM_001037333, intron 21 of 30) intron (NM_001037333, intron 21 of 30) 8513 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 620-2 chr19 56140659 56141231 + 2.5 NA promoter-TSS (NM_001253792) promoter-TSS (NM_001253792) -342 NM_018337 55311 Hs.24545 NM_018337 ENSG00000167685 ZNF444 EZF-2|EZF2|ZSCAN17 zinc finger protein 444 protein-coding 419.167-2 chr14 67467523 67467783 + 2.5 NA Intergenic Intergenic 21068 NM_001348543 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 415.5-4 chr2 144696125 144696367 + 2.5 NA intron (NR_033870, intron 1 of 4) HAL1b|LINE|L1 28279 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 429-7 chr19 11126036 11126503 + 2.5 NA intron (NM_001195803, intron 13 of 15) intron (NM_001195803, intron 13 of 15) 12795 NR_106946 102465534 NR_106946 ENSG00000284553 MIR6886 hsa-mir-6886 microRNA 6886 ncRNA 396-6 chr2 225580236 225580608 + 2.5 NA intron (NM_001371273, intron 4 of 7) intron (NM_001371273, intron 4 of 7) 179536 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 380-16 chr8 120260011 120260307 + 2.5 NA intron (NM_021110, intron 23 of 47) Charlie21a|DNA|hAT-Charlie 135057 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 381-6 chr17 51023080 51023264 + 2.5 NA intron (NM_001130527, intron 5 of 29) MIRb|SINE|MIR 23706 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 391.834-2 chr11 37229446 37229627 + 2.5 NA Intergenic Intergenic -631257 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 306-13 chr4 115616747 115616938 + 2.5 NA Intergenic Intergenic -503222 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 329.5-7 chr15 82197951 82198174 + 2.5 NA intron (NM_001040610, intron 13 of 17) intron (NM_001040610, intron 13 of 17) 64466 NM_001322845 79631 Hs.459114 NM_024580 ENSG00000140598 EFL1 EFTUD1|FAM42A|HsT19294|RIA1|SDS2 elongation factor like GTPase 1 protein-coding 771.832 chr8 61710701 61711580 + 2.5 NA intron (NM_001164755, intron 1 of 12) intron (NM_001164755, intron 1 of 12) 3452 NM_004318 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 313.333-7 chr12 18625476 18625685 + 2.5 NA intron (NM_001288774, intron 31 of 32) L1MA7|LINE|L1 111929 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 795.5-2 chr19 4247021 4247497 + 2.5 NA intron (NM_018074, intron 1 of 7) intron (NM_018074, intron 1 of 7) 179 NM_018074 55702 Hs.21811 NM_018074 ENSG00000105248 YJU2 CCDC94 YJU2 splicing factor homolog protein-coding 372-7 chr2 56780702 56781079 + 2.5 NA Intergenic L1ME1|LINE|L1 -595120 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 724.834 chr10 51010508 51011492 + 2.5 NA intron (NM_001098512, intron 1 of 17) MER20B|DNA|hAT-Charlie 20112 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 602.5-2 chr12 50212018 50212570 + 2.5 NA intron (NM_016357, intron 4 of 10) intron (NM_016357, intron 4 of 10) 10364 NM_001113547 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 326.666 chr1 175125208 175125513 + 2.5 NA intron (NM_022093, intron 12 of 18) intron (NM_022093, intron 12 of 18) 57527 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 724.5-2 chr19 38634581 38635063 + 2.5 NA intron (NM_013234, intron 6 of 7).2 L2a|LINE|L2 -12827 NM_001322033 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 588.833-3 chr3 51390772 51391128 + 2.5 NA promoter-TSS (NM_013286) promoter-TSS (NM_013286) -335 NM_013286 29890 Hs.118738 NM_013286 ENSG00000259956 RBM15B HUMAGCGB|HsOTT3|OTT3 RNA binding motif protein 15B protein-coding 279-13 chr17 54987288 54987553 + 2.5 NA intron (NM_178509, intron 3 of 17) L1MC5a|LINE|L1 -18635 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 972.166 chr2 104853936 104854648 + 2.5 NA 5' UTR (NM_006236, exon 1 of 1) 5' UTR (NM_006236, exon 1 of 1) 177 NM_006236 5455 Hs.248158 NM_006236 ENSG00000198914 POU3F3 BRN1|OTF8|brain-1|oct-8 POU class 3 homeobox 3 protein-coding 962.667 chr10 11270363 11271228 + 2.5 NA exon (NM_006561, exon 7 of 14) exon (NM_006561, exon 7 of 14) 73879 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 472.666 chr13 27409026 27409360 + 2.5 NA Intergenic MER34C2|LTR|ERV1 -15426 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 379.5-10 chr9 107275043 107275281 + 2.5 NA Intergenic L2a|LINE|L2 -8117 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 472.834 chr1 47424368 47424786 + 2.5 NA intron (NR_126355, intron 1 of 4) intron (NR_126355, intron 1 of 4) 8292 NM_012186 2301 Hs.112968 NM_012186 ENSG00000186790 FOXE3 AAT11|ASGD2|CTRCT34|FKHL12|FREAC8 forkhead box E3 protein-coding 491-2 chr1 156627179 156627566 + 2.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -5444 NR_135113 101928177 Hs.571810 NR_135113 LOC101928177 - uncharacterized LOC101928177 ncRNA 506.501-4 chr8 125674592 125674936 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR 242555 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 416.667-10 chr6 167061906 167062113 + 2.5 NA Intergenic L1MB7|LINE|L1 -49798 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 248.5-23 chr20 52779687 52779905 + 2.5 NA Intergenic MER103C|DNA|hAT-Charlie 158958 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 596-3 chr2 116337623 116337902 + 2.5 NA Intergenic Intergenic 993947 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 377.167-8 chr7 30469014 30469627 + 2.5 NA intron (NM_006092, intron 1 of 13) intron (NM_006092, intron 1 of 13) 9464 NM_006092 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 519.167-2 chr17 7060421 7060885 + 2.5 NA Intergenic Intergenic -16561 NM_001370549 162515 Hs.336564 NM_153357 ENSG00000174326 SLC16A11 MCT 11|MCT11 solute carrier family 16 member 11 protein-coding 397-10 chr20 5844446 5844772 + 2.5 NA intron (NM_001303478, intron 3 of 3) intron (NM_001303478, intron 3 of 3) -66901 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 375.667-14 chr7 40544335 40544746 + 2.5 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 409564 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 449.5-3 chr3 81493144 81493567 + 2.5 NA intron (NM_000158, intron 15 of 15) intron (NM_000158, intron 15 of 15) 268290 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 313.5-10 chr17 27247642 27247903 + 2.5 NA Intergenic L1MB8|LINE|L1 46224 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 476.333 chr10 68208407 68208871 + 2.5 NA intron (NR_045663, intron 17 of 17) intron (NR_045663, intron 17 of 17) 23474 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 207.667-21 chr19 14486541 14486701 + 2.5 NA intron (NM_202470, intron 1 of 6) MLT1I|LTR|ERVL-MaLR 9506 NM_005716 10755 Hs.655012 NM_005716 ENSG00000123159 GIPC1 C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 GIPC PDZ domain containing family member 1 protein-coding 477.5-2 chr3 5086058 5086263 + 2.5 NA Intergenic Intergenic -36132 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 530.833-3 chr8 37967058 37967279 + 2.5 NA promoter-TSS (NM_000025) promoter-TSS (NM_000025) -569 NM_000025 155 Hs.2549 NM_000025 ENSG00000188778 ADRB3 BETA3AR adrenoceptor beta 3 protein-coding 850.501 chr19 19224739 19225530 + 2.5 NA exon (NM_004386, exon 6 of 15) exon (NM_004386, exon 6 of 15) 13176 NM_004386 1463 Hs.169047 NM_004386 ENSG00000130287 NCAN CSPG3 neurocan protein-coding 643.5-3 chr6 99867883 99868609 + 2.5 NA Intergenic Intergenic -125792 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 445.001-6 chrX 103157797 103158248 + 2.5 NA Intergenic Intergenic -57070 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 534.834 chr17 42019752 42020101 + 2.5 NA promoter-TSS (NM_001144928) promoter-TSS (NM_001144928) -164 NM_017595 28511 Hs.632252 NM_017595 ENSG00000168256 NKIRAS2 KBRAS2|kappaB-Ras2 NFKB inhibitor interacting Ras like 2 protein-coding 574.834-3 chr16 62126583 62126973 + 2.5 NA Intergenic L1MC4|LINE|L1 -90340 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 434.833-3 chr4 81844855 81845543 + 2.5 NA Intergenic MER4E|LTR|ERV1 -373292 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 901.5-3 chr15 101008196 101008976 + 2.5 NA intron (NM_024652, intron 6 of 33) CpG 89229 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 485.667-6 chr19 27972395 27972806 + 2.5 NA intron (NR_146734, intron 6 of 7) L2a|LINE|L2 -178660 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 497.667 chr12 50175408 50175893 + 2.5 NA TTS (NM_001113547) TTS (NM_001113547) -8117 NM_001281731 91012 Hs.270525 NM_147190 ENSG00000139624 CERS5 LASS5|Trh4 ceramide synthase 5 protein-coding 377.334-6 chr8 29284046 29284269 + 2.5 NA Intergenic L1ME4a|LINE|L1 -21087 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 171.833-35 chr9 129140103 129140201 + 2.5 NA intron (NM_178001, intron 9 of 10) intron (NM_178001, intron 9 of 10) 28464 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 322 chr1 7891583 7891859 + 2.5 NA Intergenic L1MA8|LINE|L1 -38230 NM_021995 10911 Hs.715862 NM_006786 ENSG00000049247 UTS2 PRO1068|U-II|UCN2|UII urotensin 2 protein-coding 329.167 chr1 78543387 78543554 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR 52496 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 375.5-8 chr6 106552683 106552918 + 2.5 NA intron (NM_001371242, intron 15 of 21) intron (NM_001371242, intron 15 of 21) 40945 NM_001624 202 Hs.724262 NM_001624 ENSG00000112297 CRYBG1 AIM1|ST4 crystallin beta-gamma domain containing 1 protein-coding 319.667-2 chr10 53841001 53841504 + 2.5 NA intron (NM_001354411, intron 29 of 34) intron (NM_001354411, intron 29 of 34) -644978 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 451.334-3 chr17 49788409 49788881 + 2.5 NA promoter-TSS (NM_001199158) promoter-TSS (NM_001199158) -36 NM_001346706 11143 Hs.21907 NM_007067 ENSG00000136504 KAT7 HBO1|HBOA|MYST2|ZC2HC7 lysine acetyltransferase 7 protein-coding 514.166-2 chr8 137477080 137477364 + 2.5 NA Intergenic MIRb|SINE|MIR -63634 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 541.166 chr13 72232610 72232899 + 2.5 NA Intergenic Intergenic -365550 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 595.333-2 chr20 31559556 31560210 + 2.5 NA intron (NM_178580, intron 9 of 12) intron (NM_178580, intron 9 of 12) 13380 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 524.667-6 chr22 24156792 24157570 + 2.5 NA intron (NM_012295, intron 29 of 36) intron (NM_012295, intron 29 of 36) -24306 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 484.5-2 chr8 40951494 40951729 + 2.5 NA Intergenic L2b|LINE|L2 -53785 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 362.833-5 chr16 89700073 89700370 + 2.5 NA intron (NM_152339, intron 2 of 2) intron (NM_152339, intron 2 of 2) 1484 NM_152339 124044 Hs.374556 NM_152339 ENSG00000158792 SPATA2L C16orf76|tamo spermatogenesis associated 2 like protein-coding 556.5-3 chr14 23285677 23286357 + 2.5 NA 5' UTR (NM_020834, exon 1 of 2) 5' UTR (NM_020834, exon 1 of 2) 115 NM_020834 57594 Hs.632332 NM_020834 ENSG00000215271 HOMEZ KIAA1443 homeobox and leucine zipper encoding protein-coding 547.667-3 chr2 133744378 133744773 + 2.5 NA Intergenic Intergenic -176112 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 479.167 chr11 21524482 21524769 + 2.5 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -668460 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 1094.83 chr16 31868087 31869330 + 2.5 NA Intergenic L1MA7|LINE|L1 -5050 NR_049749 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 351.334-3 chr2 34570457 34570729 + 2.5 NA Intergenic MER54A|LTR|ERVL -106964 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 639.833 chr11 58579699 58580188 + 2.5 NA intron (NM_001197051, intron 1 of 10) intron (NM_001197051, intron 1 of 10) 829 NR_024091 386607 Hs.524920 NM_170768 ZFP91-CNTF ZFP91|ZNF757|Zfp-91 ZFP91-CNTF readthrough (NMD candidate) ncRNA 505.5-6 chr6 63310017 63310397 + 2.5 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 9770 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 1028.67 chr1 215606563 215607532 + 2.5 NA intron (NM_001319294, intron 13 of 17) intron (NM_001319294, intron 13 of 17) 39743 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 1206.33-4 chr8 81280481 81282066 + 2.5 NA intron (NM_001444, intron 1 of 3) CpG 737 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 523.833 chr3 76570232 76570626 + 2.5 NA Intergenic Intergenic -469670 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 345.667-3 chr2 101763499 101763688 + 2.5 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 65886 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 383-11 chr7 36100004 36100334 + 2.5 NA non-coding (NR_108089, exon 2 of 2) non-coding (NR_108089, exon 2 of 2) 4859 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 188-56 chr9 10620021 10620203 + 2.5 NA non-coding (NR_110696, exon 3 of 3) non-coding (NR_110696, exon 3 of 3) 6906 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 664.667-6 chr9 34437117 34437563 + 2.5 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) 21230 NM_001184945 203259 Hs.493771 NM_147202 ENSG00000164970 FAM219A C9orf25 family with sequence similarity 219 member A protein-coding 436.167 chr1 37811005 37811303 + 2.5 NA 3' UTR (NM_005955, exon 11 of 11) 3' UTR (NM_005955, exon 11 of 11) -2946 NM_024640 79693 Hs.301564 NM_024640 ENSG00000196449 YRDC DRIP3|IRIP|SUA5 yrdC N6-threonylcarbamoyltransferase domain containing protein-coding 613.333 chr1 204503373 204503679 + 2.5 NA Intergenic Intergenic -12853 NM_001204172 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 521.334-2 chr13 77194951 77195295 + 2.5 NA intron (NM_015057, intron 26 of 82) intron (NM_015057, intron 26 of 82) 119609 NR_046716 100874212 Hs.569288 NR_046716 ENSG00000236051 MYCBP2-AS1 - MYCBP2 antisense RNA 1 ncRNA 379-3 chr14 41952672 41952858 + 2.5 NA Intergenic Intergenic 345909 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 410.167-4 chr14 104077879 104078170 + 2.5 NA Intergenic LTR41C|LTR|ERVL -7676 NM_001080464 374569 Hs.146239 NM_001080464 ENSG00000166183 ASPG C14orf76|GPA/WT|LYSOLP asparaginase protein-coding 269.167-17 chr6 134178497 134178899 + 2.5 NA promoter-TSS (NM_001143677) promoter-TSS (NM_001143677) -837 NM_001143677 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 430.667-6 chr8 72942711 72943382 + 2.5 NA Intergenic Intergenic -65818 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 385-8 chr5 16875441 16875696 + 2.5 NA intron (NM_012334, intron 2 of 40) intron (NM_012334, intron 2 of 40) 60720 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 694.667-2 chr7 24821152 24821522 + 2.5 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -63398 NM_004403 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 686.333-3 chr5 175696579 175696937 + 2.5 NA intron (NR_160284, intron 3 of 3) MIR|SINE|MIR 38687 NM_001131055 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 308.333-22 chr7 130760742 130760938 + 2.5 NA Intergenic L1M5|LINE|L1 -26807 NM_138693 136259 Hs.125240 NM_138693 ENSG00000266265 KLF14 BTEB5 Kruppel like factor 14 protein-coding 446.333-4 chr8 77310323 77310705 + 2.5 NA Intergenic Intergenic -140183 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 262.167-5 chr12 119020716 119020890 + 2.5 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 39262 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 254.666 chr10 56008237 56008379 + 2.5 NA Intergenic Intergenic 352951 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 688.333-5 chr9 35489413 35490046 + 2.5 NA promoter-TSS (NM_001330740) promoter-TSS (NM_001330740) -382 NM_001330740 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 385.167-2 chr1 98556384 98557142 + 2.5 NA Intergenic LTR16C|LTR|ERVL -104958 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 324.5 chr11 58810643 58810831 + 2.5 NA Intergenic Intergenic 33967 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 575.167-2 chr13 73834967 73835737 + 2.5 NA intron (NM_007249, intron 4 of 7) intron (NM_007249, intron 4 of 7) 271108 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 546.501 chr1 160100593 160101117 + 2.5 NA Intergenic L2b|LINE|L2 -2027 NM_001206665 93185 Hs.332012 NM_052868 ENSG00000162729 IGSF8 CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL immunoglobulin superfamily member 8 protein-coding 722.999-2 chr5 56838349 56838875 + 2.5 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 23063 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 365.5-3 chr10 34391593 34391812 + 2.5 NA intron (NM_001184789, intron 7 of 22) intron (NM_001184789, intron 7 of 22) 423594 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 962.667-3 chr5 54867252 54868122 + 2.5 NA Intergenic Intergenic 117906 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 393.667 chr1 46223889 46224100 + 2.5 NA Intergenic Intergenic -3689 NM_001243766 55624 Hs.525134 NM_017739 ENSG00000085998 POMGNT1 GNTI.2|GnT I.2|LGMD2O|LGMDR15|MEB|MGAT1.2|RP76|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 440.834-2 chr15 58062755 58062960 + 2.5 NA intron (NM_001206897, intron 1 of 13) intron (NM_001206897, intron 1 of 13) -2368 NR_147215 283665 Hs.638961 NR_147215 LOC283665 - uncharacterized LOC283665 ncRNA 288.333 chr1 48184008 48184247 + 2.5 NA Intergenic L1ME2|LINE|L1 -1699 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 712-4 chr9 347625 348303 + 2.5 NA intron (NM_001193536, intron 13 of 46) intron (NM_001193536, intron 13 of 46) 74916 NM_001193536 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 432.333-7 chr19 32042079 32042309 + 2.5 NA intron (NR_110675, intron 3 of 4) intron (NR_110675, intron 3 of 4) 16332 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 892.5 chr17 19447076 19447695 + 2.5 NA Intergenic Intergenic 36153 NM_007148 7732 Hs.189482 NM_007148 ENSG00000128482 RNF112 BFP|ZNF179 ring finger protein 112 protein-coding 391.334-6 chr2 168773820 168774137 + 2.5 NA non-coding (NR_045786, exon 4 of 4) non-coding (NR_045786, exon 4 of 4) 12451 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 417.166 chr1 114619382 114619645 + 2.5 NA intron (NM_198459, intron 4 of 17) intron (NM_198459, intron 4 of 17) -37898 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 1204.33 chr5 138464212 138465118 + 2.5 NA promoter-TSS (NM_001964) promoter-TSS (NM_001964) -814 NM_001964 1958 Hs.326035 NM_001964 ENSG00000120738 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 409.333-7 chr7 30280817 30281233 + 2.5 NA intron (NR_136267, intron 1 of 3) intron (NR_136267, intron 1 of 3) -3572 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 239.667-11 chr12 120201173 120201330 + 2.5 NA promoter-TSS (NR_038924) promoter-TSS (NR_038924) -40 NM_053275 6175 Hs.546285 NM_001002 ENSG00000089157 RPLP0 L10E|LP0|P0|PRLP0|RPP0 ribosomal protein lateral stalk subunit P0 protein-coding 496.167 chr1 27906430 27906668 + 2.5 NA intron (NM_002946, intron 4 of 8) AluSg7|SINE|Alu 8026 NM_002946 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 375-13 chr5 57475716 57475981 + 2.5 NA Intergenic Intergenic 6963 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 350.667-2 chr11 119479568 119479815 + 2.5 NA intron (NR_034160, intron 3 of 3) L1MB7|LINE|L1 -54706 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 429.667-4 chr6 2749977 2750411 + 2.5 NA intron (NM_001347872, intron 1 of 12) intron (NM_001347872, intron 1 of 12) 728 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 1007 chr15 77633065 77633917 + 2.5 NA promoter-TSS (NM_032808) promoter-TSS (NM_032808) -579 NM_032808 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 180.5-10 chr11 12045685 12045877 + 2.5 NA intron (NR_135109, intron 1 of 1) MER33|DNA|hAT-Charlie 14906 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 719-2 chr12 117874722 117875332 + 2.5 NA intron (NM_173598, intron 1 of 19) intron (NM_173598, intron 1 of 19) 93963 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 525.833-2 chr16 48462225 48462519 + 2.5 NA Intergenic MER44D|DNA|TcMar-Tigger -76959 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 585.833 chr2 20395779 20396143 + 2.5 NA Intergenic Intergenic -43708 NM_001352925 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 422-8 chr16 20385707 20386194 + 2.5 NA intron (NM_174924, intron 2 of 11) intron (NM_174924, intron 2 of 11) 18787 NM_174924 204474 Hs.376025 NM_174924 ENSG00000169340 PDILT PDIA7 protein disulfide isomerase like, testis expressed protein-coding 1216.83-3 chr3 187745156 187746296 + 2.5 NA promoter-TSS (NM_001706) promoter-TSS (NM_001706) -258 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 889.833 chr18 72086377 72086954 + 2.5 NA Intergenic L2c|LINE|L2 -304439 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 904.333 chr16 10942349 10943100 + 2.5 NA promoter-TSS (NM_014015) promoter-TSS (NM_014015) -256 NM_014015 28955 Hs.592051 NM_014015 ENSG00000182108 DEXI MYLE Dexi homolog protein-coding 474-11 chr9 37482262 37482911 + 2.5 NA Intergenic Intergenic -3349 NM_001282766 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 923.5-2 chr20 24994564 24995094 + 2.5 NA Intergenic Intergenic -2078 NM_020531 57136 Hs.472330 NM_020531 ENSG00000101474 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 345.5-18 chr6 46221315 46221598 + 2.5 NA 3' UTR (NM_001251974, exon 5 of 5) 3' UTR (NM_001251974, exon 5 of 5) -50446 NM_021572 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 469.334-2 chr2 96554306 96554749 + 2.5 NA Intergenic Intergenic 16648 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 350.166-2 chr5 26705393 26705639 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 333070 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 456.5-5 chr7 33064179 33064372 + 2.5 NA Intergenic Intergenic -1478 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 308.167-2 chr11 13465883 13466194 + 2.5 NA Intergenic Intergenic -2741 NM_001297741 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 296.667-12 chr2 157593192 157593431 + 2.5 NA intron (NM_145259, intron 1 of 8) intron (NM_145259, intron 1 of 8) 4249 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 756.666 chr12 39764540 39765125 + 2.5 NA exon (NM_052885, exon 8 of 10) exon (NM_052885, exon 8 of 10) 138649 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 372.667-4 chr14 20611572 20611876 + 2.5 NA Intergenic L2a|LINE|L2 -20901 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 549.999-2 chr6 165049380 165049794 + 2.5 NA Intergenic HUERS-P3b-int|LTR|ERV1 -227524 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 436.167-7 chr6 42929255 42929548 + 2.5 NA non-coding (NR_134886, exon 1 of 2) non-coding (NR_134886, exon 1 of 2) -79 NM_001318857 107080644 Hs.144914 NM_001318856 CNPY3-GNMT - CNPY3-GNMT readthrough protein-coding 405-5 chr15 58281229 58281487 + 2.5 NA Intergenic L1ME3A|LINE|L1 142977 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 485.333-4 chr2 185207426 185207677 + 2.5 NA Intergenic Zaphod|DNA|hAT-Tip100 -40479 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 186.167-26 chr8 100719109 100719366 + 2.5 NA intron (NM_002568, intron 1 of 14) intron (NM_002568, intron 1 of 14) 2851 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 498-6 chr6 47035045 47035361 + 2.5 NA intron (NM_153840, intron 1 of 14) intron (NM_153840, intron 1 of 14) 7129 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 655 chr14 69107539 69107874 + 2.5 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 44893 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 1287.5 chr4 64584789 64586276 + 2.5 NA Intergenic Intergenic -176072 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 507.166-2 chr4 32819364 32819690 + 2.5 NA Intergenic Intergenic 468489 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 583.167-2 chr19 42295985 42296610 + 2.5 NA TTS (NM_015125) TTS (NM_015125) -5835 NM_199285 284338 Hs.585901 NM_199285 ENSG00000188368 PRR19 - proline rich 19 protein-coding 506.666 chr6 7723125 7723436 + 2.5 NA Intergenic Intergenic -2819 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 442.334 chr11 28324114 28324399 + 2.5 NA intron (NM_001113528, intron 6 of 6) intron (NM_001113528, intron 6 of 6) 153292 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 586.667-2 chr2 64865813 64866221 + 2.5 NA Intergenic Intergenic -2386 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 987.167 chr12 18158975 18159805 + 2.5 NA Intergenic Intergenic -69197 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 485.001-4 chrX 114500766 114501034 + 2.5 NA Intergenic Intergenic -83178 NM_000868 3358 Hs.149037 NM_000868 ENSG00000147246 HTR2C 5-HT1C|5-HT2C|5-HTR2C|5HTR2C|HTR1C 5-hydroxytryptamine receptor 2C protein-coding 214.167-27 chr6 103273210 103273668 + 2.5 NA Intergenic Intergenic 1586107 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 307.334-3 chr12 66234096 66234320 + 2.5 NA intron (NM_007199, intron 8 of 11) intron (NM_007199, intron 8 of 11) -16874 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 380.167 chr1 179143248 179143675 + 2.5 NA promoter-TSS (NM_005158) promoter-TSS (NM_005158) -385 NM_005158 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 513.667-2 chr6 106979638 106979875 + 2.5 NA Intergenic Intergenic -2901 NM_001291738 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 445.333-12 chr9 98989244 98989563 + 2.5 NA intron (NM_001855, intron 5 of 41) intron (NM_001855, intron 5 of 41) 45496 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 317.5 chr1 32933256 32933815 + 2.5 NA Intergenic AluY|SINE|Alu 31274 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 764.834-2 chr7 149625073 149625903 + 2.5 NA promoter-TSS (NR_027788) promoter-TSS (NR_027788) -698 NR_027789 79970 Hs.520785 NM_024910 ENSG00000133624 ZNF767P ZNF767 zinc finger family member 767, pseudogene pseudo 1141.83 chr2 159118254 159119235 + 2.5 NA intron (NM_001350063, intron 4 of 24) intron (NM_001350063, intron 4 of 24) -68091 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 241.5 chr1 77230022 77230240 + 2.5 NA Intergenic Intergenic -10701 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 436.833-4 chr17 60719016 60719362 + 2.5 NA intron (NM_001330413, intron 5 of 25) intron (NM_001330413, intron 5 of 25) 41338 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 423-11 chr3 140864689 140864905 + 2.5 NA Intergenic L1MA3|LINE|L1 -77039 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 709.166-2 chr4 159946831 159947239 + 2.5 NA Intergenic Intergenic -169251 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 762.333 chr10 129030987 129031799 + 2.5 NA Intergenic Intergenic 118560 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 443.833-3 chr19 35269817 35270005 + 2.5 NA exon (NM_003367, exon 4 of 10) exon (NM_003367, exon 4 of 10) 949 NM_001321150 7392 Hs.454534 NM_003367 ENSG00000105698 USF2 FIP|bHLHb12 upstream transcription factor 2, c-fos interacting protein-coding 816.5 chr12 48890820 48891305 + 2.5 NA Intergenic Intergenic -13071 NM_033124 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 543.167 chr19 50783706 50784210 + 2.5 NA intron (NR_134883, intron 3 of 3) AluSg|SINE|Alu 2252 NR_134883 105372440 Hs.606943 NR_134883 ENSG00000261341 LOC105372440 - uncharacterized LOC105372440 ncRNA 444.5-9 chr6 73158665 73158951 + 2.5 NA intron (NM_001160132, intron 10 of 13) L1ME4c|LINE|L1 -15294 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 532.667-4 chr8 137852684 137852995 + 2.5 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 230706 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 429.167-7 chr3 173528812 173529189 + 2.5 NA intron (NM_014932, intron 2 of 6) L1PB4|LINE|L1 -55434 NM_001365928 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 283.667-15 chr7 4575090 4575246 + 2.5 NA Intergenic Intergenic -107127 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 449.167-3 chr3 102234681 102234985 + 2.5 NA Intergenic Intergenic 71128 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 1169 chr14 70971940 70972945 + 2.5 NA intron (NM_014982, intron 5 of 35) intron (NM_014982, intron 5 of 35) 64983 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 479.667 chr1 168195890 168196253 + 2.5 NA intron (NM_152902, intron 4 of 6) intron (NM_152902, intron 4 of 6) 17109 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 481.167-4 chr3 32947674 32948297 + 2.5 NA Intergenic Intergenic -3659 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 448 chr1 150103546 150103941 + 2.5 NA intron (NR_103998, intron 12 of 13) intron (NR_103998, intron 12 of 13) 35967 NM_001279354 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 926.167 chr8 80230657 80231453 + 2.5 NA Intergenic Intergenic -10334 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 668.167-3 chr4 140850980 140851470 + 2.5 NA Intergenic Intergenic -94840 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 360.833-5 chr3 80806192 80806376 + 2.5 NA Intergenic Intergenic 35580 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 639-3 chr8 18564883 18565402 + 2.5 NA intron (NM_015310, intron 14 of 15) MER5A|DNA|hAT-Charlie 173860 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 202.833-20 chr3 157200915 157201042 + 2.5 NA Intergenic Intergenic -40218 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 348.167-2 chr13 108609334 108609764 + 2.5 NA intron (NM_015011, intron 1 of 34) intron (NM_015011, intron 1 of 34) 13644 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 500-2 chr1 199550768 199551061 + 2.5 NA Intergenic Intergenic 402316 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 910.5 chr17 11644043 11644828 + 2.5 NA intron (NM_001372, intron 10 of 68) intron (NM_001372, intron 10 of 68) 45965 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 688.833-3 chr6 33700187 33700919 + 2.5 NA intron (NM_032340, intron 2 of 3) intron (NM_032340, intron 2 of 3) 2425 NR_037498 100500873 NR_037498 ENSG00000266509 MIR3934 - microRNA 3934 ncRNA 677-3 chr4 10164650 10165274 + 2.5 NA Intergenic Intergenic -48163 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 641.333-5 chr6 125311032 125311472 + 2.5 NA Intergenic Intergenic -9285 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 499.333-3 chr5 61657402 61657778 + 2.5 NA intron (NR_126524, intron 2 of 3) intron (NR_126524, intron 2 of 3) 19809 NR_126524 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 352.5-3 chr11 110890053 110890345 + 2.5 NA Intergenic L2|LINE|L2 -177010 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 538.667-3 chr5 126234387 126234791 + 2.5 NA Intergenic Intergenic 50586 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 481.667-4 chr8 131856820 131857377 + 2.5 NA Intergenic MLT1G|LTR|ERVL-MaLR -46995 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 486.5-2 chr1 210441590 210441918 + 2.5 NA intron (NM_001122834, intron 7 of 11) intron (NM_001122834, intron 7 of 11) 112388 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 545.667 chr1 210400745 210401157 + 2.5 NA intron (NM_001122834, intron 5 of 11) intron (NM_001122834, intron 5 of 11) 71585 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 1103.5-2 chr8 13042028 13042674 + 2.5 NA Intergenic Intergenic 30087 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 447.167 chr18 58768358 58768637 + 2.5 NA Intergenic CpG -45383 NR_146904 105372147 Hs.210837 NR_146904 ENSG00000267593 LINC01926 - long intergenic non-protein coding RNA 1926 ncRNA 332-28 chr8 122651633 122651841 + 2.5 NA Intergenic L1M1|LINE|L1 42369 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 507.501 chr4 108199998 108200302 + 2.5 NA Intergenic Intergenic 28030 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 434-9 chr4 155371640 155371903 + 2.5 NA intron (NM_001039580, intron 4 of 13) intron (NM_001039580, intron 4 of 13) 5194 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 438.001-2 chr3 55495080 55495320 + 2.5 NA Intergenic L1MA8|LINE|L1 -7558 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 424.5-11 chr20 23349796 23350123 + 2.5 NA promoter-TSS (NM_013248) promoter-TSS (NM_013248) -832 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 285-10 chr2 18367313 18367471 + 2.5 NA Intergenic Intergenic 193261 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 502.833 chr18 12897971 12898185 + 2.5 NA Intergenic LTR16E2|LTR|ERVL -13743 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 431.166 chr11 18775099 18775442 + 2.5 NA intron (NM_006906, intron 1 of 14) intron (NM_006906, intron 1 of 14) 16528 NM_006906 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 353.833-8 chr2 28958200 28958881 + 2.5 NA Intergenic AluJo|SINE|Alu -22758 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 507.667-4 chr8 91476413 91477136 + 2.5 NA Intergenic L1MEc|LINE|L1 227455 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 713.166-3 chrX 11993549 11993886 + 2.5 NA intron (NM_001368398, intron 3 of 18) intron (NM_001368398, intron 3 of 18) -71824 NM_001368402 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 491-7 chr20 36399818 36400154 + 2.5 NA intron (NM_001365621, intron 2 of 12) MER20B|DNA|hAT-Charlie -61482 NM_001042486 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 650.667-5 chr4 117085329 117085863 + 2.5 NA promoter-TSS (NM_152402) promoter-TSS (NM_152402) -20 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 584.833 chr7 153381228 153381781 + 2.5 NA Intergenic Intergenic 30730 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 239.5-43 chr9 80101378 80101532 + 2.5 NA Intergenic L1MB7|LINE|L1 126432 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1218.17 chr17 76432005 76433455 + 2.5 NA intron (NM_022066, intron 1 of 17) L1MB7|LINE|L1 20422 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 458.834-2 chr6 117840546 117840911 + 2.5 NA Intergenic L1M3b|LINE|L1 -66536 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 428.833 chr12 96489197 96489455 + 2.5 NA promoter-TSS (NM_001367885) promoter-TSS (NM_001367885) -251 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 414.833-5 chr19 33143711 33144045 + 2.5 NA intron (NR_135565, intron 2 of 11) MamGypLTR3|LTR|Gypsy 11764 NR_135565 126248 Hs.211046 NM_173479 ENSG00000166359 WDR88 PQWD WD repeat domain 88 protein-coding 465-2 chr17 17297366 17297764 + 2.5 NA Intergenic L1MB7|LINE|L1 -5808 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 1092.17-2 chr8 32546573 32547603 + 2.5 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -1122 NM_013958 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 492-2 chr11 23275649 23275888 + 2.5 NA Intergenic Intergenic 143422 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 640.333 chr13 91312761 91313646 + 2.5 NA Intergenic Intergenic -34617 NR_027349 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 368.334-2 chr11 121554913 121555165 + 2.5 NA intron (NM_003105, intron 17 of 47) Tigger15a|DNA|TcMar-Tigger 102725 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 393.334-2 chr15 58182509 58182969 + 2.5 NA intron (NM_020980, intron 5 of 5) intron (NM_020980, intron 5 of 5) 44358 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 261-15 chr22 22868723 22868917 + 2.5 NA Intergenic Intergenic -17447 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 631.833 chr14 95527332 95528008 + 2.5 NA Intergenic Intergenic 5959 NR_003002 677768 Hs.448753 NR_003002 ENSG00000252481 SCARNA13 U93 small Cajal body-specific RNA 13 ncRNA 817.167 chr1 88877210 88878416 + 2.5 NA intron (NM_001514, intron 2 of 6) AluSx1|SINE|Alu 13754 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 450.333-4 chr18 1093294 1093813 + 2.5 NA Intergenic Intergenic -165560 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 915.668 chr3 184874853 184875466 + 2.5 NA intron (NM_001009921, intron 20 of 46) intron (NM_001009921, intron 20 of 46) 62652 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 231.5-30 chr6 131597624 131597768 + 2.5 NA intron (NM_015979, intron 21 of 30) intron (NM_015979, intron 21 of 30) 24470 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 606.834 chr4 118685137 118685665 + 2.5 NA promoter-TSS (NR_125930) promoter-TSS (NR_125930) 9 NM_020961 57721 Hs.596872 NM_020961 ENSG00000145388 METTL14 hMETTL14 methyltransferase like 14 protein-coding 264.5-22 chr6 72737632 72737755 + 2.5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 107198 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 442.334-3 chr15 92900262 92900534 + 2.5 NA promoter-TSS (NM_001271) promoter-TSS (NM_001271) 74 NM_001271 1106 Hs.220864 NM_001271 ENSG00000173575 CHD2 EEOC chromodomain helicase DNA binding protein 2 protein-coding 290-4 chr11 134360175 134360558 + 2.5 NA 3' UTR (NM_001370462, exon 8 of 8) 3' UTR (NM_001370462, exon 8 of 8) 28378 NM_001370462 89944 Hs.436178 NM_138342 ENSG00000149328 GLB1L2 MST114|MSTP114 galactosidase beta 1 like 2 protein-coding 738.333-2 chr5 132190009 132190716 + 2.5 NA 3' UTR (NM_001365678, exon 16 of 16) 3' UTR (NM_001365678, exon 16 of 16) 5486 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 441.833-8 chr8 23452698 23452944 + 2.5 NA intron (NM_004901, intron 1 of 12) intron (NM_004901, intron 1 of 12) 4826 NM_004901 9583 Hs.444389 NM_004901 ENSG00000197217 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 207.667-18 chr16 77951942 77952144 + 2.5 NA intron (NM_020927, intron 7 of 8) MER67D|LTR|ERV1 -70505 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 502.333-3 chr19 43596080 43596683 + 2.5 NA promoter-TSS (NM_024327) promoter-TSS (NM_024327) -11 NM_024327 79177 Hs.11110 NM_024327 ENSG00000124444 ZNF576 - zinc finger protein 576 protein-coding 750.166 chr1 179369529 179370352 + 2.5 NA intron (NR_073544, intron 3 of 25) intron (NR_073544, intron 3 of 25) 3896 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 670-2 chr2 99821179 99821694 + 2.5 NA intron (NM_001025108, intron 7 of 23) MER30|DNA|hAT-Charlie 284147 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 637.333-2 chr2 218731512 218732158 + 2.5 NA intron (NM_014640, intron 2 of 19) intron (NM_014640, intron 2 of 19) 21000 NM_014640 9654 Hs.471405 NM_014640 ENSG00000135912 TTLL4 - tubulin tyrosine ligase like 4 protein-coding 648.834-2 chr10 100950095 100950653 + 2.5 NA intron (NM_018121, intron 16 of 19) intron (NM_018121, intron 16 of 19) -22155 NM_017893 57715 Hs.591923 NM_017893 ENSG00000095539 SEMA4G - semaphorin 4G protein-coding 641.5 chr11 8566567 8567058 + 2.5 NA intron (NM_030906, intron 1 of 13) intron (NM_030906, intron 1 of 13) 27164 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 595.167 chr1 117121793 117122176 + 2.5 NA promoter-TSS (NM_025188) promoter-TSS (NM_025188) -235 NM_001145635 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 418-7 chr5 124927767 124928117 + 2.5 NA Intergenic Intergenic -108889 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 481.167 chr1 173970640 173971086 + 2.5 NA intron (NM_001300852, intron 7 of 18) intron (NM_001300852, intron 7 of 18) 22209 NM_001300850 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 449.167-6 chrX 51542483 51542869 + 2.5 NA Intergenic L1MC2|LINE|L1 -35235 NR_110654 102723426 Hs.584513 NR_110654 LINC01496 - long intergenic non-protein coding RNA 1496 ncRNA 577.167 chr1 226912456 226912758 + 2.5 NA Intergenic Charlie1b|DNA|hAT-Charlie -27687 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 563.333-3 chr12 114684083 114684568 + 2.5 NA promoter-TSS (NM_005996) promoter-TSS (NM_005996) -150 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 1330 chr2 128754962 128755860 + 2.5 NA Intergenic Intergenic -109189 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 516.333-3 chr4 108195341 108195639 + 2.5 NA Intergenic AluJo|SINE|Alu 23370 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 266.667-9 chr16 74965485 74965666 + 2.5 NA intron (NM_001324172, intron 2 of 13) intron (NM_001324172, intron 2 of 13) 19548 NM_030581 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 211-12 chr12 15540529 15540675 + 2.5 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -6009 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 434.666 chr1 89799346 89799782 + 2.5 NA Intergenic LTR78|LTR|ERV1 -21468 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 721-3 chr15 71743640 71744087 + 2.5 NA intron (NM_001286429, intron 5 of 11) intron (NM_001286429, intron 5 of 11) -52324 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 693.666 chr1 109426471 109426997 + 2.5 NA promoter-TSS (NM_001199773) promoter-TSS (NM_001199773) -286 NM_001199774 5686 Hs.485246 NM_002790 ENSG00000143106 PSMA5 PSC5|ZETA proteasome subunit alpha 5 protein-coding 564.833-6 chr7 33933002 33933306 + 2.5 NA intron (NM_133468, intron 3 of 15) intron (NM_133468, intron 3 of 15) 27615 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 450.166-2 chr2 105394820 105395095 + 2.5 NA intron (NM_201555, intron 2 of 7) A-rich|Low_complexity|Low_complexity 4094 NM_201555 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 585-2 chr17 55572671 55572957 + 2.5 NA Intergenic L1MB4|LINE|L1 150050 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 415.667-8 chr5 9266844 9267187 + 2.5 NA intron (NM_003966, intron 5 of 22) MIRb|SINE|MIR -213120 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 624.834-3 chr17 33674302 33675285 + 2.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -141033 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 295.833-3 chr2 149616599 149616835 + 2.5 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -28942 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 833.668 chr21 32569506 32570176 + 2.5 NA intron (NR_146639, intron 10 of 11) CpG 15682 NM_144659 140290 Hs.728804 NM_018277 ENSG00000242220 TCP10L C21orf77|PRED77|TCP10A-1|TCP10A-2 t-complex 10 like protein-coding 271.833-8 chr17 73312204 73312440 + 2.5 NA promoter-TSS (NM_012121) promoter-TSS (NM_012121) -321 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 464.167 chr1 26776989 26777262 + 2.5 NA intron (NM_139135, intron 19 of 19) AluJb|SINE|Alu -10838 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 521.5-4 chr3 176023860 176024108 + 2.5 NA Intergenic L1ME1|LINE|L1 -220567 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 755.667-3 chr10 11551735 11552487 + 2.5 NA intron (NM_014688, intron 2 of 14) intron (NM_014688, intron 2 of 14) -19831 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 676.5-4 chr5 149960531 149961176 + 2.5 NA 5' UTR (NM_000112, exon 1 of 3) 5' UTR (NM_000112, exon 1 of 3) 116 NM_000112 1836 Hs.302738 NM_000112 ENSG00000155850 SLC26A2 D5S1708|DTD|DTDST|EDM4|MST153|MSTP157 solute carrier family 26 member 2 protein-coding 251.667 chr1 26853218 26853399 + 2.5 NA intron (NM_032283, intron 7 of 7) intron (NM_032283, intron 7 of 7) -9841 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 370.834 chr10 7303183 7303359 + 2.5 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 106070 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 582-2 chr6 25263370 25263657 + 2.5 NA Intergenic AluSx3|SINE|Alu -2106 NR_110862 101928663 Hs.561600 NR_110862 LOC101928663 - uncharacterized LOC101928663 ncRNA 801-2 chr8 142634628 142635418 + 2.5 NA Intergenic Intergenic -3573 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 579.833-3 chr20 8131587 8132127 + 2.5 NA promoter-TSS (NM_015192) promoter-TSS (NM_015192) -409 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 902.5 chr2 20642361 20643215 + 2.5 NA intron (NM_022460, intron 2 of 6) intron (NM_022460, intron 2 of 6) 8310 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 237-39 chr9 33026256 33026469 + 2.5 NA intron (NM_001539, intron 1 of 8) intron (NM_001539, intron 1 of 8) 1089 NM_001539 3301 Hs.445203 NM_001539 ENSG00000086061 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ heat shock protein family (Hsp40) member A1 protein-coding 936.5 chr12 18249952 18250834 + 2.5 NA Intergenic Intergenic -11147 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 539.334 chr10 29866081 29866410 + 2.5 NA Intergenic Intergenic -129309 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 920.167-4 chr8 127178313 127179125 + 2.5 NA Intergenic Intergenic 18908 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 1152.67 chr1 214261212 214262143 + 2.5 NA Intergenic Intergenic -19482 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 263.667-15 chr21 18475789 18476008 + 2.5 NA Intergenic Intergenic -72113 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 463.333-4 chr3 172341657 172341937 + 2.5 NA intron (NM_001135095, intron 17 of 25) intron (NM_001135095, intron 17 of 25) 106659 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 682.5 chr11 62905882 62906502 + 2.5 NA Intergenic Intergenic 15171 NM_000738 1128 Hs.632119 NM_000738 ENSG00000168539 CHRM1 HM1|M1|M1R cholinergic receptor muscarinic 1 protein-coding 541.5-6 chr2 166384886 166385157 + 2.5 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -9034 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 402.666-3 chr11 59142817 59143131 + 2.5 NA promoter-TSS (NR_110184) promoter-TSS (NR_110184) 118 NM_001312910 63901 Hs.150651 NM_022074 ENSG00000166801 FAM111A GCLEB|KCS2 family with sequence similarity 111 member A protein-coding 256.667-15 chr2 20286790 20286946 + 2.5 NA intron (NM_001282790, intron 9 of 18) L1M5|LINE|L1 40518 NM_001282790 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 561.5-2 chr3 108500429 108500923 + 2.5 NA intron (NM_014981, intron 4 of 41) intron (NM_014981, intron 4 of 41) 28646 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 743.999-2 chr6 159174030 159174588 + 2.5 NA intron (NM_032532, intron 1 of 22) intron (NM_032532, intron 1 of 22) -4302 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 214-40 chr3 149487727 149487854 + 2.5 NA intron (NM_004617, intron 3 of 4) intron (NM_004617, intron 3 of 4) 13093 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 384.666 chr1 210391063 210391256 + 2.5 NA intron (NM_001170564, intron 4 of 9).2 L1PB2|LINE|L1 61793 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 412 chr12 29211131 29211467 + 2.5 NA intron (NM_001271783, intron 1 of 11) AluSx|SINE|Alu -12367 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 646.5-6 chrX 11144152 11144544 + 2.5 NA intron (NM_001287242, intron 10 of 12) intron (NM_001287242, intron 10 of 12) 33016 NM_005333 3052 Hs.211571 NM_005333 ENSG00000004961 HCCS CCHL|LSDMCA1|MCOPS7|MLS holocytochrome c synthase protein-coding 913.501 chr8 5062067 5062765 + 2.5 NA Intergenic Intergenic -67502 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 498.166 chr19 47848940 47849331 + 2.5 NA Intergenic MIR|SINE|MIR 27198 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 373.333 chr1 175375707 175375923 + 2.5 NA intron (NM_003285, intron 9 of 22) intron (NM_003285, intron 9 of 22) -182828 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 390.666-4 chr3 196970084 196970289 + 2.5 NA Intergenic CpG-20638 -1353 NM_025163 80235 Hs.518403 NM_025163 ENSG00000119227 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis class Z protein-coding 924.001 chr7 45135866 45136804 + 2.5 NA Intergenic MER90|LTR|ERV1 -21456 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 252-6 chr1 177204132 177204257 + 2.5 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 33236 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 888-2 chr6 25720140 25720696 + 2.5 NA Intergenic L2c|LINE|L2 6144 NM_170745 221613 Hs.406739 NM_170745 ENSG00000164508 HIST1H2AA H2AA|H2AFR|TH2A|bA317E16.2 histone cluster 1 H2A family member a protein-coding 616 chr2 112584008 112584427 + 2.5 NA promoter-TSS (NM_001304354) promoter-TSS (NM_001304354) -230 NM_001304353 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|CHTM1|MIC14|MIX14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 497.667-5 chr6 12605553 12606023 + 2.5 NA Intergenic Intergenic -20384 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 355.667-8 chr2 68030407 68030654 + 2.5 NA Intergenic Intergenic 32474 NM_173177 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 1293.17 chr13 53151493 53152581 + 2.5 NA promoter-TSS (NR_125788) promoter-TSS (NR_125788) -137 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 608.668 chr11 114295044 114295536 + 2.5 NA promoter-TSS (NM_006169) promoter-TSS (NM_006169) -523 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 303.833-2 chr12 54368803 54369074 + 2.5 NA TTS (NM_001290001) TTS (NM_001290001) -4452 NM_020370 53831 Hs.306199 NM_020370 ENSG00000139572 GPR84 EX33|GPCR4 G protein-coupled receptor 84 protein-coding 1031.83 chr1 197614816 197615767 + 2.5 NA intron (NR_125340, intron 10 of 19) intron (NR_125340, intron 10 of 19) 160189 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 453.001 chr11 44093423 44093688 + 2.5 NA Intergenic SVA_B|Retroposon|SVA -1994 NM_207122 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 301.5-19 chr7 41359371 41359499 + 2.5 NA Intergenic Intergenic 257831 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 242.167-12 chr2 12442534 12442636 + 2.5 NA intron (NR_110196, intron 4 of 5) MLT1I|LTR|ERVL-MaLR 243455 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 600.333 chr1 93629413 93629759 + 2.5 NA intron (NM_001261409, intron 3 of 11) intron (NM_001261409, intron 3 of 11) -15489 NM_001261410 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 748.167-3 chr8 19870041 19870717 + 2.5 NA Intergenic Intergenic 52963 NM_018142 55174 Hs.512627 NM_018142 ENSG00000104613 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 317-2 chr12 32811355 32811499 + 2.5 NA intron (NM_001005242, intron 9 of 12) Tigger4|DNA|TcMar-Tigger -55530 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 662.833-2 chr21 25283612 25284229 + 2.5 NA Intergenic L1M8|LINE|L1 147781 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 411.834 chr11 74170967 74171209 + 2.5 NA promoter-TSS (NM_016147) promoter-TSS (NM_016147) -69 NM_001286577 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 domain containing 3 centriole elongation regulator protein-coding 451.667-3 chr18 22032348 22033052 + 2.5 NA Intergenic Intergenic 136268 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 455.501 chr10 76376272 76376772 + 2.5 NA intron (NM_001305581, intron 6 of 6) L1P4|LINE|L1 -511522 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 488.5-2 chr12 45268931 45269410 + 2.5 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) -23520 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 258.666-6 chr14 28754887 28755052 + 2.5 NA intron (NR_125758, intron 2 of 6) intron (NR_125758, intron 2 of 6) 10350 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 249.667-4 chr10 72819984 72820239 + 2.5 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) -73628 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 370-16 chr8 61675680 61675999 + 2.5 NA 3' UTR (NM_001164756, exon 5 of 5) 3' UTR (NM_001164756, exon 5 of 5) 13972 NM_032468 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 736.5 chr11 6757528 6758039 + 2.5 NA Intergenic Intergenic 11174 NM_001004490 338755 Hs.534614 NM_001004490 ENSG00000188124 OR2AG2 OR11-76|OR2AG2P olfactory receptor family 2 subfamily AG member 2 protein-coding 450.334-4 chr5 146427276 146427750 + 2.5 NA Intergenic L2a|LINE|L2 -19820 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 430.167-3 chr8 136130728 136131306 + 2.5 NA Intergenic Intergenic -399781 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 573.334-2 chr14 51616643 51617074 + 2.5 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) -16906 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 559.334-3 chr9 96232355 96232631 + 2.5 NA Intergenic Intergenic -13970 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 580.167-3 chr17 35538608 35539105 + 2.5 NA promoter-TSS (NM_001363830) promoter-TSS (NM_001363830) -995 NM_001363830 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 725 chr14 22589061 22589831 + 2.5 NA promoter-TSS (NM_001344) promoter-TSS (NM_001344) -222 NM_001344 1603 Hs.82890 NM_001344 ENSG00000129562 DAD1 OST2 defender against cell death 1 protein-coding 379.5-6 chr2 180668412 180668878 + 2.5 NA Intergenic Intergenic -23459 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 725.499 chr20 13302594 13303233 + 2.5 NA Intergenic Intergenic -63226 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 471-7 chr5 177426304 177426613 + 2.5 NA promoter-TSS (NM_001364164) promoter-TSS (NM_001364164) -218 NM_001364164 2870 Hs.235116 NM_002082 ENSG00000198055 GRK6 GPRK6 G protein-coupled receptor kinase 6 protein-coding 425.333-4 chr7 3310582 3310796 + 2.5 NA intron (NM_152744, intron 1 of 44) L2|LINE|L2 9437 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 608.5-2 chr6 38034051 38034467 + 2.5 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 214532 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 798.666-2 chr12 1583424 1584078 + 2.5 NA intron (NM_152441, intron 1 of 1) intron (NM_152441, intron 1 of 1) 10830 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 426.167-7 chr2 63756019 63756687 + 2.5 NA Intergenic Intergenic -84611 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 328.333-13 chr7 25570403 25570600 + 2.5 NA Intergenic L1MA9|LINE|L1 92639 NR_157825 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 873.333 chr11 46529083 46529742 + 2.5 NA intron (NM_001267782, intron 8 of 19) intron (NM_001267782, intron 8 of 19) 58032 NR_160027 55626 Hs.654644 NM_017749 ENSG00000110497 AMBRA1 DCAF3|WDR94 autophagy and beclin 1 regulator 1 protein-coding 337-8 chr5 34958226 34958518 + 2.5 NA 3' UTR (NM_001348420, exon 12 of 12) 3' UTR (NM_001348420, exon 12 of 12) 28779 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 451.834-3 chr6 83221809 83222204 + 2.5 NA intron (NM_002395, intron 12 of 13) intron (NM_002395, intron 12 of 13) -28106 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 616.667-2 chr20 1212840 1213420 + 2.5 NA Intergenic Intergenic 9676 NM_001009612 400831 Hs.148503 NM_001009612 ENSG00000215595 C20orf202 - chromosome 20 open reading frame 202 protein-coding 845.166-3 chr8 122447403 122448086 + 2.5 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 120900 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 252.5-14 chr21 14401139 14401264 + 2.5 NA Intergenic Intergenic -18055 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 375.167-3 chr17 70083377 70083606 + 2.5 NA intron (NM_001270422, intron 1 of 5) Tigger3a|DNA|TcMar-Tigger 8266 NM_001270422 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 425.5-2 chr1 109585275 109585530 + 2.5 NA intron (NM_006496, intron 5 of 8) intron (NM_006496, intron 5 of 8) -13491 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 1117.17 chr20 815934 816826 + 2.5 NA Intergenic Intergenic -17335 NM_001289145 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 756.5 chr1 42146789 42147471 + 2.5 NA Intergenic Intergenic -6280 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 285.5-18 chr3 105513191 105513370 + 2.5 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 146371 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 250.167-7 chr13 80341285 80341673 + 2.5 NA promoter-TSS (NM_005842) promoter-TSS (NM_005842) -353 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 353.5-8 chr14 24707414 24707588 + 2.5 NA Intergenic Intergenic -73311 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 591.333 chr5 141172143 141172621 + 2.5 NA promoter-TSS (NM_018940) promoter-TSS (NM_018940) -262 NM_018940 56129 Hs.203830 NM_018940 ENSG00000113212 PCDHB7 PCDH-BETA7 protocadherin beta 7 protein-coding 522.833 chr1 195014409 195014723 + 2.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 1074149 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 200.5-7 chr12 49637040 49637130 + 2.5 NA 3' UTR (NM_198900, exon 25 of 25) 3' UTR (NM_198900, exon 25 of 25) 6541 NM_001363607 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 526.667 chr15 74048049 74048536 + 2.5 NA TTS (NM_033238) TTS (NM_033238) 34258 NM_001038640 342096 Hs.546408 NM_001038640 ENSG00000159289 GOLGA6A GLP|GOLGA6 golgin A6 family member A protein-coding 368.333 chr1 39398540 39398725 + 2.5 NA intron (NM_012090, intron 52 of 92) intron (NM_012090, intron 52 of 92) -10441 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 323-12 chr2 35492909 35493134 + 2.5 NA Intergenic Intergenic 21616 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 842.5 chr11 19903691 19904379 + 2.5 NA intron (NM_182964, intron 6 of 37) intron (NM_182964, intron 6 of 37) -118521 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 686.334 chr8 141183440 141183930 + 2.5 NA intron (NM_001362798, intron 17 of 21) intron (NM_001362798, intron 17 of 21) 44889 NM_001286648 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 734.5-2 chr10 16545298 16546000 + 2.5 NA Intergenic Intergenic -23770 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 394-9 chr5 66313487 66313798 + 2.5 NA Intergenic L1MEi|LINE|L1 -104196 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 293.167-14 chr9 121686665 121687093 + 2.5 NA intron (NM_032552, intron 2 of 16) intron (NM_032552, intron 2 of 16) -55906 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 1036-4 chr6 42075066 42075817 + 2.5 NA intron (NM_138572, intron 7 of 8) intron (NM_138572, intron 7 of 8) 24917 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAF(II)43|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 679.667-3 chr18 49178704 49179215 + 2.5 NA intron (NM_001353210, intron 13 of 16) UCON4|Unknown|Unknown -129191 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 434.167-4 chr8 98290108 98290418 + 2.5 NA intron (NR_135747, intron 1 of 11) intron (NR_135747, intron 1 of 11) 3972 NM_001321636 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 645.166 chr3 10783340 10783939 + 2.5 NA Intergenic Intergenic -19430 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 655.501 chr15 98292398 98292888 + 2.5 NA Intergenic Intergenic 38915 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 737-2 chr2 88001463 88002053 + 2.5 NA Intergenic LTR41|LTR|ERVL -15968 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2 like and GRIP domain containing 1 protein-coding 607.5 chr19 56333650 56334055 + 2.5 NA intron (NM_001322072, intron 2 of 6) L1PA16|LINE|L1 -19013 NM_001322065 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 405.5-4 chr16 17476524 17477214 + 2.5 NA Intergenic Intergenic -5909 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 884.333 chr11 22169657 22170596 + 2.5 NA Intergenic Intergenic -22959 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 181.833-27 chr8 79361688 79361764 + 2.5 NA Intergenic Intergenic 29538 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 257.833-3 chr17 61922493 61922659 + 2.5 NA intron (NM_001351695, intron 3 of 24) intron (NM_001351695, intron 3 of 24) 5406 NM_001351695 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 430.5-6 chr6 156728752 156729024 + 2.5 NA Intergenic L1ME1|LINE|L1 -48967 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 779 chr8 51810451 51810825 + 2.5 NA Intergenic Intergenic -1193 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 1032.5-3 chr9 26326349 26327264 + 2.5 NA Intergenic Intergenic 260131 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 307-16 chr8 26191665 26191889 + 2.5 NA Intergenic Intergenic -99731 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 387.834-3 chr19 6862767 6863121 + 2.5 NA Intergenic Intergenic -24635 NM_001256253 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 431-9 chr21 23607059 23607299 + 2.5 NA Intergenic L1M2|LINE|L1 -222344 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 352.333-10 chr5 79178951 79179161 + 2.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -57075 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 467.167-3 chr5 83608309 83608572 + 2.5 NA Intergenic Intergenic -46126 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 437-13 chrX 93422627 93423326 + 2.5 NA Intergenic Intergenic 250602 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 453.667-2 chr14 50954575 50954940 + 2.5 NA Intergenic Intergenic -10274 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 601.999-3 chr7 928442 928841 + 2.5 NA intron (NM_006869, intron 2 of 10) L1MB7|LINE|L1 -1425 NM_001284310 11033 Hs.602573 NM_006869 ENSG00000105963 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 481.833 chr2 41646019 41646415 + 2.5 NA Intergenic Intergenic -231338 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 473.333 chr10 56081834 56082288 + 2.5 NA Intergenic MIRb|SINE|MIR 279198 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 740.334 chr12 71938935 71939380 + 2.5 NA intron (NM_173353, intron 1 of 10) intron (NM_173353, intron 1 of 10) 312 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 416-9 chr5 116766497 116766740 + 2.5 NA Intergenic Intergenic -4409 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 383-7 chr4 10840077 10840370 + 2.5 NA Intergenic Intergenic -155455 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 658.5-2 chr22 23178404 23179247 + 2.5 NA Intergenic Intergenic -1684 NM_004327 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 475.5-4 chr8 125840604 125840871 + 2.5 NA Intergenic L1PREC2|LINE|L1 110460 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 516.166 chr22 22356964 22357717 + 2.5 NA Intergenic Intergenic 59242 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 821.333 chr2 191217439 191218468 + 2.5 NA Intergenic Intergenic -27451 NM_001330237 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 405.667-10 chr9 94554504 94554876 + 2.5 NA promoter-TSS (NR_121566) promoter-TSS (NR_121566) -355 NR_121568 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 ncRNA 720.333-2 chr3 190443203 190443740 + 2.5 NA intron (NM_207316, intron 2 of 4) intron (NM_207316, intron 2 of 4) 6405 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 302.833-9 chr22 40634380 40634516 + 2.5 NA intron (NM_020831, intron 1 of 14) L2c|LINE|L2 2271 NM_001282662 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 505-4 chr2 118029693 118029942 + 2.5 NA Intergenic MER57A-int|LTR|ERV1 -15747 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 239.5-40 chr8 81551684 81551894 + 2.5 NA Intergenic LTR32|LTR|ERVL -20399 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 248.5-32 chr5 114680619 114680746 + 2.5 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 92731 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 606.666 chr14 45527196 45527542 + 2.5 NA Intergenic L1PA16|LINE|L1 188233 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 1213.17 chr15 71385683 71386862 + 2.5 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -160964 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 816.501-2 chr5 93898592 93899420 + 2.5 NA intron (NR_028080, intron 4 of 8) MIRb|SINE|MIR -157406 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 487.833-3 chr19 10871138 10871431 + 2.5 NA promoter-TSS (NM_199141) promoter-TSS (NM_199141) -269 NM_001370088 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 388.333-6 chr15 51906012 51906294 + 2.5 NA intron (NM_014547, intron 9 of 9) intron (NM_014547, intron 9 of 9) 17967 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 325.667-11 chr6 41889801 41889941 + 2.5 NA intron (NM_018561, intron 2 of 6) L1MC4|LINE|L1 5504 NM_018561 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 396.5-3 chr16 12573393 12573665 + 2.5 NA 3' UTR (NM_032167, exon 21 of 21) 3' UTR (NM_032167, exon 21 of 21) -146792 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 543.166-2 chr3 177777900 177778564 + 2.5 NA Intergenic Intergenic -38633 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 661.833 chr5 160861760 160862311 + 2.5 NA Intergenic Charlie1|DNA|hAT-Charlie -9824 NM_001366655 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 1006.33-3 chr4 154637389 154638193 + 2.5 NA Intergenic Intergenic -24983 NM_000509 2266 Hs.727584 NM_000509 ENSG00000171557 FGG - fibrinogen gamma chain protein-coding 473.166-2 chr2 103922761 103923002 + 2.5 NA Intergenic Intergenic 485451 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 295.167-9 chr16 29700588 29700758 + 2.5 NA Intergenic Intergenic 21493 NM_014298 23475 Hs.513484 NM_014298 ENSG00000103485 QPRT HEL-S-90n|QPRTase quinolinate phosphoribosyltransferase protein-coding 476.833-3 chr12 90058960 90059336 + 2.5 NA Intergenic Intergenic 111455 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 702.166-2 chr8 71512466 71513306 + 2.5 NA intron (NM_001370334, intron 2 of 19) L1M7|LINE|L1 34818 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 601.5-2 chr21 29560934 29561286 + 2.5 NA intron (NM_000830, intron 15 of 16) intron (NM_000830, intron 15 of 16) -34930 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 247.666-4 chr14 54695283 54695418 + 2.5 NA intron (NM_015589, intron 1 of 11) MLT1F|LTR|ERVL-MaLR -59483 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 318.334-8 chr4 30620274 30620508 + 2.5 NA Intergenic Intergenic -99978 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 499.167 chr10 67791139 67791369 + 2.5 NA Intergenic Intergenic 46925 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 552.333-2 chr9 136784223 136784478 + 2.5 NA Intergenic HERVK-int|LTR|ERVK -6994 NM_032928 85014 Hs.356744 NM_032928 ENSG00000244187 TMEM141 - transmembrane protein 141 protein-coding 410.334 chr11 57116739 57117020 + 2.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -65074 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 585.333 chr12 47963117 47964069 + 2.5 NA promoter-TSS (NM_001143841) promoter-TSS (NM_001143841) -3 NM_001143842 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 742.5 chr15 77118399 77119245 + 2.5 NA intron (NM_024776, intron 7 of 7) intron (NM_024776, intron 7 of 7) -47713 NM_005724 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 216.833-5 chr10 116915067 116915174 + 2.5 NA intron (NM_001127211, intron 13 of 16) intron (NM_001127211, intron 13 of 16) -65398 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 329.333-9 chr19 41397398 41397790 + 2.5 NA promoter-TSS (NM_000709) promoter-TSS (NM_000709) -224 NM_000709 593 Hs.433307 NM_000709 ENSG00000248098 BCKDHA BCKDE1A|MSU|MSUD1|OVD1A branched chain keto acid dehydrogenase E1 subunit alpha protein-coding 469.667-4 chr2 36646965 36647445 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -49037 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 180.833-18 chr5 1737941 1738041 + 2.5 NA Intergenic L1MC1|LINE|L1 -29123 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 325-14 chr6 61736751 61736968 + 2.5 NA intron (NR_146874, intron 6 of 13) L2c|LINE|L2 162729 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 541.834-3 chr4 152454319 152454636 + 2.5 NA intron (NM_001349798, intron 2 of 13) intron (NM_001349798, intron 2 of 13) 34939 NR_036092 100422896 NR_036092 ENSG00000264678 MIR3140 mir-3140 microRNA 3140 ncRNA 995.501 chr2 235116806 235117940 + 2.5 NA Intergenic Intergenic 89638 NM_001371306 496.5 chr13 79527230 79527463 + 2.5 NA intron (NM_019080, intron 2 of 7) L1ME4a|LINE|L1 -39381 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 683.333 chr1 171227012 171227684 + 2.5 NA Intergenic Intergenic -21123 NM_001282694 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 1009.17-2 chr14 77070599 77071289 + 2.5 NA intron (NR_110553, intron 2 of 2) intron (NR_110553, intron 2 of 2) 5247 NR_110553 102724190 Hs.562528 NR_110553 ENSG00000258819 LINC02289 - long intergenic non-protein coding RNA 2289 ncRNA 515.167-5 chr6 101835897 101836242 + 2.5 NA intron (NM_001166247, intron 9 of 16) HAL1|LINE|L1 437084 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 435.834-4 chr8 132820735 132820931 + 2.5 NA intron (NM_001277196, intron 11 of 19) intron (NM_001277196, intron 11 of 19) 45445 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 644.167-2 chrX 57350879 57351167 + 2.5 NA intron (NR_148564, intron 5 of 11) L1PB4|LINE|L1 64169 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 383.833-9 chr5 141606534 141606811 + 2.5 NA intron (NM_005219, intron 1 of 27) intron (NM_005219, intron 1 of 27) 12328 NM_001079812 1729 Hs.529451 NM_005219 ENSG00000131504 DIAPH1 DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1 diaphanous related formin 1 protein-coding 781.667 chr1 147494931 147495453 + 2.5 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 22683 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 329.166-3 chr2 54669570 54669821 + 2.5 NA 3' UTR (NM_003128, exon 36 of 36) 3' UTR (NM_003128, exon 36 of 36) -55317 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 505.833-3 chr5 138542867 138543449 + 2.5 NA promoter-TSS (NM_001291975) promoter-TSS (NM_001291975) 78 NM_004730 2107 Hs.483494 NM_004730 ENSG00000120705 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 175.667-6 chr10 30182877 30182981 + 2.5 NA Intergenic Intergenic -28923 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 441.334-4 chr7 873531 873907 + 2.5 NA non-coding (NR_160283, exon 21 of 21) non-coding (NR_160283, exon 21 of 21) -2835 NM_015949 51608 Hs.107387 NM_015949 ENSG00000239857 GET4 C7orf20|CEE|CGI-20|TRC35 guided entry of tail-anchored proteins factor 4 protein-coding 307.5-22 chr7 108466725 108466869 + 2.5 NA Intergenic L1PA14|LINE|L1 -10077 NM_001371124 1041.17 chr4 155353697 155354395 + 2.5 NA promoter-TSS (NR_125937) promoter-TSS (NR_125937) -170 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 394.167-10 chr5 27285062 27285254 + 2.5 NA Intergenic L1MEd|LINE|L1 -187134 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 484.5 chr16 46801399 46801620 + 2.5 NA non-coding (NR_145835, exon 5 of 5) non-coding (NR_145835, exon 5 of 5) 29539 NR_145835 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 586.499 chr5 61658004 61658762 + 2.5 NA intron (NR_126524, intron 2 of 3) intron (NR_126524, intron 2 of 3) 20602 NR_126524 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 556.333 chr11 13384967 13385340 + 2.5 NA intron (NR_147789, intron 19 of 20) intron (NR_147789, intron 19 of 20) 55126 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 649 chr14 69460096 69460546 + 2.5 NA 3' UTR (NM_001252148, exon 6 of 6) 3' UTR (NM_001252148, exon 6 of 6) -24407 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 1124 chr6 136643946 136644744 + 2.5 NA intron (NM_005923, intron 11 of 29) intron (NM_005923, intron 11 of 29) 15231 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 585 chr11 22319873 22320336 + 2.5 NA Intergenic Intergenic -18277 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 588 chr15 64248061 64248545 + 2.5 NA intron (NM_001329607, intron 4 of 11) intron (NM_001329607, intron 4 of 11) -85148 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 625.5-2 chr8 10839634 10840083 + 2.5 NA promoter-TSS (NM_017884) promoter-TSS (NM_017884) 17 NM_017884 54984 Hs.490991 NM_017884 ENSG00000254093 PINX1 Gno1|LPTL|LPTS|Pxr1 PIN2 (TERF1) interacting telomerase inhibitor 1 protein-coding 263.667-7 chr14 53429851 53430079 + 2.5 NA Intergenic L1M4|LINE|L1 276611 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 426.167 chr1 97244015 97244354 + 2.5 NA intron (NM_000110, intron 18 of 22) intron (NM_000110, intron 18 of 22) 148261 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 459.166-4 chr6 148925835 148926079 + 2.5 NA intron (NM_005715, intron 2 of 7) intron (NM_005715, intron 2 of 7) 38727 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 280.667-2 chr10 72216252 72216395 + 2.5 NA promoter-TSS (NM_001198799) promoter-TSS (NM_001198799) -47 NM_001369110 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 452.334-2 chr10 62037224 62037551 + 2.5 NA intron (NM_032199, intron 4 of 9) MIR1_Amn|SINE|MIR -11970 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 437.5-3 chr2 209969123 209969309 + 2.5 NA intron (NM_032504, intron 51 of 63) intron (NM_032504, intron 51 of 63) -33349 NM_001278289 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 293.167-8 chr2 78066188 78066577 + 2.5 NA intron (NR_110288, intron 1 of 3) MamGypsy2-I|LTR|Gypsy -22348 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 785.5 chr15 87032546 87033457 + 2.5 NA Intergenic MER33|DNA|hAT-Charlie -44575 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 297-8 chr15 51099971 51100183 + 2.5 NA intron (NM_207381, intron 1 of 2) L3|LINE|CR1 -5171 NM_001311175 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 386.5-9 chr5 4508359 4508603 + 2.5 NA Intergenic L1MD|LINE|L1 -265000 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 430.5-3 chr14 54776623 54777094 + 2.5 NA intron (NM_015589, intron 10 of 11) (TG)n|Simple_repeat|Simple_repeat 22025 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 210.667-48 chr7 51040920 51041091 + 2.5 NA intron (NM_015198, intron 8 of 12) intron (NM_015198, intron 8 of 12) -247552 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 599.834 chr3 88113742 88114302 + 2.5 NA intron (NM_001350135, intron 3 of 6) intron (NM_001350135, intron 3 of 6) 35844 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 479.5-2 chr14 51735582 51735858 + 2.5 NA Intergenic L1MEc|LINE|L1 18437 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 357.5-5 chr14 20592374 20592546 + 2.5 NA intron (NR_122043, intron 2 of 4) intron (NR_122043, intron 2 of 4) -1637 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 477.5-4 chr5 87965361 87965649 + 2.5 NA Intergenic Charlie2a|DNA|hAT-Charlie 303340 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 919.167 chr18 13813014 13813834 + 2.5 NA Intergenic Intergenic -10725 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 470.833-6 chr2 102872389 102872795 + 2.5 NA TTS (NR_135562) TTS (NR_135562) 23130 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 667.667 chr12 11634085 11634745 + 2.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -15439 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 769.167 chr12 49358240 49359058 + 2.5 NA Intergenic L3b|LINE|CR1 -8256 NM_023071 65244 Hs.654826 NM_023071 ENSG00000123352 SPATS2 Nbla00526|P59SCR|SCR59|SPATA10 spermatogenesis associated serine rich 2 protein-coding 396.333-7 chr5 145256338 145256511 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 578918 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 427.166-2 chr5 32057369 32057652 + 2.5 NA intron (NM_178140, intron 10 of 24) intron (NM_178140, intron 10 of 24) 116809 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 611.833-3 chr3 155382191 155382625 + 2.5 NA Intergenic Intergenic -88725 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 380-13 chr5 96670702 96671039 + 2.5 NA intron (NM_001330629, intron 1 of 30) intron (NM_001330629, intron 1 of 30) 7845 NM_001330628 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 351.667-6 chr12 77049911 77050313 + 2.5 NA intron (NM_203394, intron 4 of 12) intron (NM_203394, intron 4 of 12) 15457 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 298.5-6 chr11 76552066 76552264 + 2.5 NA 3' UTR (NM_001300943, exon 21 of 21) 3' UTR (NM_001300943, exon 21 of 21) 107140 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 494.833-3 chr3 158644366 158644727 + 2.5 NA promoter-TSS (NM_001308166) promoter-TSS (NM_001308166) 18 NM_001308164 85476 Hs.518355 NM_024996 ENSG00000168827 GFM1 COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1 G elongation factor mitochondrial 1 protein-coding 874.5 chr5 75680923 75681580 + 2.5 NA intron (NM_152408, intron 9 of 10) MIR|SINE|MIR 31204 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 630.166-2 chrX 152958778 152959307 + 2.5 NA intron (NM_007150, intron 16 of 22) CpG 17371 NM_001178115 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 with LIM domain protein-coding 635.334 chr16 67514529 67514938 + 2.5 NA Intergenic LOR1a|LTR|ERV1 14012 NR_104656 100505942 Hs.121233 NR_104656 LOC100505942 - uncharacterized LOC100505942 ncRNA 443.834-2 chr4 109926539 109926900 + 2.5 NA intron (NM_001357021, intron 1 of 19) Charlie7|DNA|hAT-Charlie 13836 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 611.5 chr1 56968226 56968713 + 2.5 NA Intergenic Intergenic -2329 NM_001278544 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 1079.83 chr16 2868062 2868792 + 2.5 NA Intergenic CpG -10257 NM_022119 64063 Hs.459709 NM_022119 ENSG00000005001 PRSS22 BSSP-4|SP001LA|hBSSP-4 serine protease 22 protein-coding 212.5-32 chr7 21476568 21476680 + 2.5 NA intron (NM_003112, intron 3 of 5) intron (NM_003112, intron 3 of 5) 5566 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 1051.83 chr1 39183299 39184258 + 2.5 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 99611 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 431.667-4 chr20 10419173 10419497 + 2.5 NA intron (NM_018848, intron 2 of 5) MER46C|DNA|TcMar-Tigger 12590 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 592.167-3 chr17 50546454 50547178 + 2.5 NA promoter-TSS (NM_001258373) promoter-TSS (NM_001258373) -273 NM_001258373 64847 Hs.103147 NM_022827 ENSG00000006282 SPATA20 HEL-S-98|SSP411|Tisp78 spermatogenesis associated 20 protein-coding 340.833-14 chr8 19928510 19929048 + 2.5 NA Intergenic AluJo|SINE|Alu -10474 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 726 chr1 27357253 27357730 + 2.5 NA exon (NM_004672, exon 23 of 29) exon (NM_004672, exon 23 of 29) 9470 NM_001297609 9064 Hs.194694 NM_004672 ENSG00000142733 MAP3K6 ASK2|MAPKKK6|MEKK6 mitogen-activated protein kinase kinase kinase 6 protein-coding 761.166 chr15 98779543 98780385 + 2.5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -4462 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 294.166-4 chr2 190634417 190634640 + 2.5 NA Intergenic LTR102_Mam|LTR|ERVL -14367 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 273-27 chr7 42430939 42431132 + 2.5 NA Intergenic Intergenic -193826 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 418.5-7 chr8 119874505 119875087 + 2.5 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 1074 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 803 chr9 122810300 122811032 + 2.5 NA Intergenic Intergenic 10543 NM_080859 392392 Hs.632681 NM_080859 ENSG00000165204 OR1K1 hg99 olfactory receptor family 1 subfamily K member 1 protein-coding 571.167 chr6 47309971 47310367 + 2.5 NA promoter-TSS (NM_014452) promoter-TSS (NM_014452) -264 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 698.667-2 chrX 103488155 103488928 + 2.5 NA Intergenic Intergenic 30948 NM_080879 142684 Hs.706904 NM_080879 ENSG00000172476 RAB40A RAR2|RAR2A RAB40A, member RAS oncogene family protein-coding 491-12 chr9 101445263 101445587 + 2.5 NA Intergenic Intergenic -9651 NM_000035 229 Hs.530274 NM_000035 ENSG00000136872 ALDOB ALDB|ALDO2 aldolase, fructose-bisphosphate B protein-coding 323.167-6 chr4 72310160 72310362 + 2.5 NA intron (NM_014243, intron 14 of 21) intron (NM_014243, intron 14 of 21) 258960 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 759.499-2 chr18 13824034 13824505 + 2.5 NA 5' UTR (NM_005913, exon 1 of 2) 5' UTR (NM_005913, exon 1 of 2) 120 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 1268.33 chr1 37681868 37682996 + 2.5 NA 3' UTR (NM_001350755, exon 5 of 5) 3' UTR (NM_001350755, exon 5 of 5) 8097 NM_001303030 54955 Hs.272673 NM_017850 ENSG00000116922 C1orf109 - chromosome 1 open reading frame 109 protein-coding 521.833-3 chr2 185280206 185280451 + 2.5 NA Intergenic MIR|SINE|MIR -113256 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 576.333 chr14 94689427 94689939 + 2.5 NA Intergenic Intergenic 48958 NR_015340 388007 Hs.527795 NR_015340 ENSG00000187483 SERPINA13P SERPINA13|UNQ6121 serpin family A member 13, pseudogene pseudo 206.5-43 chr4 69692603 69692766 + 2.5 NA Intergenic L1P4|LINE|L1 -39437 NM_006798 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 643.833 chr10 133329667 133329955 + 2.5 NA intron (NM_001321617, intron 1 of 5) MER53|DNA|hAT 7085 NM_001321617 50632 Hs.148680 NM_015722 ENSG00000130643 CALY DRD1IP|NSG3 calcyon neuron specific vesicular protein protein-coding 525.5 chr18 1998184 1998618 + 2.5 NA Intergenic HAL1|LINE|L1 573104 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 847.667 chr7 6077147 6077885 + 2.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -18287 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 359.167-2 chr12 11488356 11488795 + 2.5 NA Intergenic L2a|LINE|L2 -1897 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 705.5 chr6 116216745 116217204 + 2.5 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) 37101 NM_021648 23270 Hs.284141 NM_021648 ENSG00000187189 TSPYL4 dJ486I3.2 TSPY like 4 protein-coding 360.667-7 chr22 30135782 30136010 + 2.5 NA intron (NM_001329457, intron 11 of 11) L1MEc|LINE|L1 55432 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 543.333 chrX 110412822 110413307 + 2.5 NA intron (NM_001171689, intron 2 of 7) L2c|LINE|L2 -5993 NM_020769 57529 Hs.201071 NM_020769 ENSG00000243978 RTL9 MAR9|MART9|RGAG1|SIRH10 retrotransposon Gag like 9 protein-coding 430.5-2 chr11 76459321 76459824 + 2.5 NA intron (NM_020193, intron 5 of 20) intron (NM_020193, intron 5 of 20) 14547 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 1201.83 chr18 34122491 34123528 + 2.5 NA intron (NM_001353232, intron 2 of 9) MER135|DNA|DNA -74397 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 980.667-2 chr5 68285899 68286725 + 2.5 NA intron (NM_181523, intron 7 of 15) intron (NM_181523, intron 7 of 15) -2207 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 387.5-6 chr22 24839595 24839767 + 2.5 NA intron (NM_001098498, intron 2 of 23) L1MB2|LINE|L1 33460 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 595.667-4 chr3 126703575 126704276 + 2.5 NA promoter-TSS (NM_001320610) promoter-TSS (NM_001320610) -315 NM_001320610 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 625.5-3 chr9 101791712 101792385 + 2.5 NA Intergenic Intergenic -53468 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 552-3 chr5 179493898 179494437 + 2.5 NA Intergenic Intergenic 22544 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 967-3 chr16 74812871 74813549 + 2.5 NA Intergenic G-rich|Low_complexity|Low_complexity -38390 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 196.5-3 chr10 32189549 32189796 + 2.5 NA Intergenic Intergenic -133247 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 647-2 chr11 118198049 118198429 + 2.5 NA intron (NM_001098526, intron 7 of 9) intron (NM_001098526, intron 7 of 9) 14707 NM_153206 120425 Hs.16291 NM_153206 ENSG00000160593 JAML AMICA|AMICA1|CREA7-1|CREA7-4|Gm638 junction adhesion molecule like protein-coding 495.833-2 chr16 3028158 3028602 + 2.5 NA TTS (NM_024339) TTS (NM_024339) -4094 NM_001288665 54985 Hs.423103 NM_017885 ENSG00000103145 HCFC1R1 HPIP host cell factor C1 regulator 1 protein-coding 345-19 chr4 146342542 146342752 + 2.5 NA intron (NM_001317816, intron 4 of 10) intron (NM_001317816, intron 4 of 10) -65936 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 426.001 chr6 165245317 165245808 + 2.5 NA Intergenic Intergenic 64043 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 964.5 chr11 75896633 75897501 + 2.5 NA intron (NM_003369, intron 5 of 14) intron (NM_003369, intron 5 of 14) 81857 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 431.5-3 chr14 26477378 26477740 + 2.5 NA intron (NM_001366391, intron 4 of 5) intron (NM_001366391, intron 4 of 5) 75871 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 429.667-2 chr3 184129220 184129490 + 2.5 NA Intergenic Intergenic -6003 NM_003907 8893 Hs.283551 NM_003907 ENSG00000145191 EIF2B5 CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM eukaryotic translation initiation factor 2B subunit epsilon protein-coding 356.833-3 chr14 73624668 73624912 + 2.5 NA Intergenic MIR|SINE|MIR 7946 NM_001037162 641372 Hs.122038 NM_001037162 ENSG00000205669 ACOT6 C14orf42|c14_5530 acyl-CoA thioesterase 6 protein-coding 583.334-2 chr3 160486348 160486966 + 2.5 NA promoter-TSS (NR_148403) promoter-TSS (NR_148403) -910 NR_148403 100174949 NR_148401 ENSG00000248710 TRIM59-IFT80 IFT80-L TRIM59-IFT80 protein ncRNA 309.667-17 chr4 113952423 113952656 + 2.5 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 27108 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 366.5-2 chr13 114192949 114193134 + 2.5 NA Intergenic L1M3|LINE|L1 -41804 NM_001330105 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 198.833-2 chr1 173255332 173255414 + 2.5 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -48042 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 788.334 chr6 117975606 117976651 + 2.5 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 68864 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 468-2 chr16 23435379 23435657 + 2.5 NA intron (NM_153603, intron 4 of 16) intron (NM_153603, intron 4 of 16) 17671 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 780.833-2 chr21 28637014 28637735 + 2.5 NA Intergenic Intergenic 98056 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 205.5-10 chr11 119666519 119666678 + 2.5 NA intron (NM_002855, intron 5 of 5) intron (NM_002855, intron 5 of 5) 62602 NM_002855 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 475-2 chr3 12706152 12706699 + 2.5 NA Intergenic LTR16|LTR|ERVL -42224 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 474.666-2 chr12 41291270 41291561 + 2.5 NA intron (NM_001164595, intron 3 of 9) MIRb|SINE|MIR 103095 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 376.833-3 chr12 78500662 78500860 + 2.5 NA Intergenic Intergenic -141015 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 269-19 chr22 27142167 27142352 + 2.5 NA Intergenic Intergenic -45257 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 446.667 chr14 41514384 41514696 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -92316 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 287.333-8 chr22 26268595 26268760 + 2.5 NA intron (NM_001184776, intron 1 of 14) MER20|DNA|hAT-Charlie 99203 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 514.667-7 chr3 58994721 58995241 + 2.5 NA intron (NR_147235, intron 4 of 6) intron (NR_147235, intron 4 of 6) 55044 NM_001351532 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 309-8 chr12 53791276 53791554 + 2.5 NA Intergenic (TTTTTA)n|Simple_repeat|Simple_repeat -34381 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 1126-2 chr3 51501805 51502609 + 2.5 NA Intergenic Intergenic -2192 NM_001349170 9730 Hs.716623 NM_014703 ENSG00000145041 DCAF1 RIP|VPRBP DDB1 and CUL4 associated factor 1 protein-coding 442-5 chr22 25901348 25901754 + 2.5 NA intron (NM_001318245, intron 29 of 43) intron (NM_001318245, intron 29 of 43) 159363 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 397-16 chr5 98132668 98132934 + 2.5 NA intron (NR_146477, intron 3 of 4) intron (NR_146477, intron 3 of 4) 28438 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 371-13 chr6 145285516 145285767 + 2.5 NA Intergenic Intergenic 401236 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 508.833-4 chr16 30615139 30615614 + 2.5 NA Intergenic Intergenic -4601 NR_073481 115509 Hs.454685 NM_138447 ENSG00000156853 ZNF689 TIPUH1 zinc finger protein 689 protein-coding 478.334-2 chr3 89664708 89665038 + 2.5 NA Intergenic AluSx|SINE|Alu 557252 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 688.167-2 chr15 95450060 95450430 + 2.5 NA intron (NR_027133, intron 1 of 5) intron (NR_027133, intron 1 of 5) 17152 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 518.5-2 chr12 128782098 128782444 + 2.5 NA Intergenic Intergenic 41687 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 589.834 chr8 29137137 29137743 + 2.5 NA intron (NM_015254, intron 21 of 39) intron (NM_015254, intron 21 of 39) 125630 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 371.5-11 chr6 133984458 133984764 + 2.5 NA exon (NM_004865, exon 6 of 7) exon (NM_004865, exon 6 of 7) 31387 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 993.001 chr16 48686867 48688044 + 2.5 NA Intergenic Intergenic -77275 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 302.666-9 chr5 62143845 62144057 + 2.5 NA Intergenic Intergenic -162211 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 483.166 chr1 113976820 113977288 + 2.5 NA 3' UTR (NM_181358, exon 14 of 14) 3' UTR (NM_181358, exon 14 of 14) -2337 NM_001286353 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 321.5-14 chr20 31739089 31739257 + 2.5 NA promoter-TSS (NM_012112) promoter-TSS (NM_012112) -117 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 635.667-2 chr14 30443344 30444038 + 2.5 NA intron (NR_151720, intron 3 of 3) intron (NR_151720, intron 3 of 3) -115432 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 309.167 chr1 248916427 248916656 + 2.5 NA intron (NM_001017434, intron 2 of 2) intron (NM_001017434, intron 2 of 2) 10298 NM_001017434 267002 Hs.602037 NM_170725 ENSG00000185220 PGBD2 - piggyBac transposable element derived 2 protein-coding 487.5-6 chr10 51209828 51210087 + 2.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -89616 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 911.667-2 chrX 73855221 73856053 + 2.5 NA Intergenic Intergenic -2884 NR_001564 7503 Hs.529901 NR_001564 ENSG00000229807 XIST DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66 X inactive specific transcript ncRNA 763.166 chr3 108477472 108478091 + 2.5 NA intron (NM_014981, intron 12 of 41) intron (NM_014981, intron 12 of 41) 51541 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 469-4 chr8 72764847 72765189 + 2.5 NA intron (NM_004770, intron 2 of 2) L4_C_Mam|LINE|RTE-X 32973 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 369.833-10 chr9 19004865 19005029 + 2.5 NA intron (NM_001287049, intron 1 of 3) L1MB4|LINE|L1 28262 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 361.834-3 chr2 224449664 224449878 + 2.5 NA Intergenic Intergenic -47664 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 357-8 chr2 171289188 171289431 + 2.5 NA Intergenic L2a|LINE|L2 -58016 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 371-17 chr9 110217682 110218068 + 2.5 NA Intergenic Intergenic -9742 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 623.833 chr11 32960411 32960981 + 2.5 NA intron (NM_001076786, intron 8 of 12) intron (NM_001076786, intron 8 of 12) -55182 NM_001077242 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 311.5-5 chr14 61176941 61177164 + 2.5 NA Intergenic AluSq2|SINE|Alu 104286 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 452.833 chr12 28963788 28963977 + 2.5 NA Intergenic L1MC3|LINE|L1 -185396 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 425.167-2 chr4 90381895 90382156 + 2.5 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 146994 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 654 chr5 90385351 90385678 + 2.5 NA Intergenic Intergenic 24272 NM_004365 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 783 chr12 51531785 51532512 + 2.5 NA Intergenic Intergenic -59085 NM_001330260 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 765.833-2 chr17 39623393 39624037 + 2.5 NA Intergenic MIRb|SINE|MIR -3237 NM_032192 84152 Hs.286192 NM_032192 ENSG00000131771 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding 740.999 chr6 24583374 24583923 + 2.5 NA promoter-TSS (NM_001252328) promoter-TSS (NM_001252328) -421 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 542.5-2 chr2 143284213 143284665 + 2.5 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 155020 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 761.168 chr8 94574118 94574805 + 2.5 NA Intergenic Intergenic -20943 NM_183009 25962 Hs.202238 NM_015496 ENSG00000164944 VIRMA KIAA1429|MSTP054|fSAP121 vir like m6A methyltransferase associated protein-coding 253.333-17 chr3 21130078 21130249 + 2.5 NA Intergenic MSTD|LTR|ERVL-MaLR -275563 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 1221.67 chr14 49620220 49621046 + 2.5 NA promoter-TSS (NM_001001) promoter-TSS (NM_001001) -7 NM_001001 6166 Hs.444749 NM_001001 ENSG00000165502 RPL36AL RPL36A ribosomal protein L36a like protein-coding 927-2 chr11 9506627 9507488 + 2.5 NA intron (NM_001282656, intron 11 of 15) intron (NM_001282656, intron 11 of 15) 46045 NM_003442 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 543.5 chr19 10027841 10028180 + 2.5 NA Intergenic Intergenic -10344 NR_049855 100847093 NR_049855 ENSG00000266204 MIR5589 - microRNA 5589 ncRNA 592.667-3 chr2 218687323 218688236 + 2.5 NA intron (NM_001369423, intron 11 of 26) MIRb|SINE|MIR 15461 NM_001369423 27148 Hs.471404 NM_015690 ENSG00000163482 STK36 FU serine/threonine kinase 36 protein-coding 413.5-4 chr3 149752745 149752948 + 2.5 NA promoter-TSS (NM_016094) promoter-TSS (NM_016094) -347 NR_135149 51122 Hs.432729 NM_016094 ENSG00000114744 COMMD2 HSPC042 COMM domain containing 2 protein-coding 729.667-2 chr2 205885522 205886054 + 2.5 NA Intergenic Intergenic 200386 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 358-4 chr12 123233133 123233405 + 2.5 NA promoter-TSS (NM_022782) promoter-TSS (NM_022782) -128 NR_103517 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 815-2 chr11 12963802 12964393 + 2.5 NA Intergenic MER45A|DNA|hAT-Tip100 25451 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 302.5-2 chr1 217447543 217447715 + 2.5 NA intron (NM_018040, intron 9 of 9) intron (NM_018040, intron 9 of 9) 183461 NM_001297754 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 470.833-11 chr3 118030623 118030818 + 2.5 NA Intergenic L1MEf|LINE|L1 -339795 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 360.5-6 chr2 57824497 57824807 + 2.5 NA Intergenic L1M1|LINE|L1 -82999 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 401-3 chr2 134918539 134918946 + 2.5 NA promoter-TSS (NM_058241) promoter-TSS (NM_058241) -80 NM_001241 905 Hs.744115 NM_001241 ENSG00000082258 CCNT2 CYCT2 cyclin T2 protein-coding 861.333-2 chr5 128674621 128675465 + 2.5 NA Intergenic Intergenic -136798 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 836.167 chr2 48470712 48471557 + 2.5 NA exon (NM_152994, exon 10 of 21) exon (NM_152994, exon 10 of 21) 30365 NM_001193475 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 480.166 chr15 101289060 101289354 + 2.5 NA intron (NR_135506, intron 1 of 5) intron (NR_135506, intron 1 of 5) 6041 NR_135507 6627 Hs.528763 NM_003090 ENSG00000131876 SNRPA1 Lea1|U2A' small nuclear ribonucleoprotein polypeptide A' protein-coding 544.666 chr12 85448700 85448955 + 2.5 NA Intergenic Intergenic 168607 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 515.666 chr2 112121595 112122247 + 2.5 NA Intergenic Intergenic -16464 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 560.333-4 chr6 159691188 159691750 + 2.5 NA 3' UTR (NM_001322816, exon 2 of 2) 3' UTR (NM_001322816, exon 2 of 2) 1772 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 614.666-2 chr5 176660426 176661196 + 2.5 NA Intergenic Intergenic 13327 NM_001006616 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 341.5-13 chr22 32926617 32926863 + 2.5 NA intron (NM_003490, intron 4 of 13) L1MEg|LINE|L1 80081 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 830.667-2 chr15 65053346 65054422 + 2.5 NA TTS (NM_178859) TTS (NM_178859) 8497 NM_178859 123264 Hs.27018 NM_178859 ENSG00000186198 SLC51B OSTB|OSTBETA solute carrier family 51 beta subunit protein-coding 403.5-2 chr1 200979717 200979969 + 2.5 NA intron (NM_001252103, intron 28 of 33) intron (NM_001252103, intron 28 of 33) 43871 NM_001252103 23046 Hs.169182 NM_017596 ENSG00000116852 KIF21B - kinesin family member 21B protein-coding 429.667-5 chr6 113271615 113271821 + 2.5 NA Intergenic Intergenic 161729 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 911.332 chr13 70568272 70569432 + 2.5 NA Intergenic Intergenic -446289 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 746.833 chr9 71911100 71911622 + 2.5 NA promoter-TSS (NM_182505) promoter-TSS (NM_182505) -116 NM_001025780 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 391.666-4 chr17 5590643 5590935 + 2.5 NA Intergenic Intergenic -6280 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 324.5-15 chr8 130453835 130454020 + 2.5 NA Intergenic Intergenic -10253 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 487-3 chr7 20291088 20291302 + 2.5 NA Intergenic Intergenic -5513 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 343.334-4 chr21 14225042 14225321 + 2.5 NA intron (NR_135310, intron 4 of 4) intron (NR_135310, intron 4 of 4) 9024 NR_135310 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 785.332 chr7 100483000 100483417 + 2.5 NA promoter-TSS (NM_173564) promoter-TSS (NM_173564) -719 NM_173564 222950 Hs.320086 NM_173564 ENSG00000166924 NYAP1 C7orf51 neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1 protein-coding 420.5-4 chr11 108307620 108307805 + 2.5 NA TTS (NM_001351110) TTS (NM_001351110) 84183 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 334.5-11 chr15 85026826 85026972 + 2.5 NA intron (NM_173454, intron 1 of 20) MER112|DNA|hAT-Charlie 44925 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 367.833-2 chr1 149886391 149887074 + 2.5 NA promoter-TSS (NM_003528) promoter-TSS (NM_003528) -50 NM_003528 8349 Hs.2178 NM_003528 ENSG00000184678 HIST2H2BE GL105|H2B|H2B.1|H2BFQ|H2BGL105|H2BQ histone cluster 2 H2B family member e protein-coding 690.833-2 chr2 44243984 44244747 + 2.5 NA Intergenic Intergenic -31115 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 602.834 chr17 20008888 20009776 + 2.5 NA promoter-TSS (NM_001243439) promoter-TSS (NM_001243439) -27 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 272.5-26 chrX 56882814 56882989 + 2.5 NA Intergenic L1MA2|LINE|L1 112640 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 320.666-7 chr2 17708270 17708506 + 2.5 NA intron (NM_024624, intron 16 of 26) intron (NM_024624, intron 16 of 26) 45422 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 618.834-4 chr9 93159884 93160532 + 2.5 NA Intergenic Intergenic -24722 NM_001282394 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 678-2 chr19 7970438 7971198 + 2.5 NA intron (NM_001419, intron 4 of 5) FLAM_C|SINE|Alu -27152 NM_006351 10469 Hs.465784 NM_006351 ENSG00000104980 TIMM44 TIM44 translocase of inner mitochondrial membrane 44 protein-coding 601.167-3 chr2 151495139 151495627 + 2.5 NA intron (NM_001271208, intron 174 of 182) MER5A|DNA|hAT-Charlie 85481 NM_001177663 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 458-5 chr2 127988569 127988947 + 2.5 NA intron (NM_001330303, intron 13 of 19) AluJb|SINE|Alu 38537 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 447.5-3 chr15 74240077 74240565 + 2.5 NA intron (NM_025055, intron 1 of 18) intron (NM_025055, intron 1 of 18) 3995 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 201.667-56 chr9 136041704 136041839 + 2.5 NA intron (NM_144653, intron 2 of 5) L1MB8|LINE|L1 53518 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 332.167-3 chr14 49288019 49288244 + 2.5 NA Intergenic Intergenic 298249 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 388-11 chr4 36821403 36821596 + 2.5 NA Intergenic Intergenic -179599 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 1038.33-2 chr8 131028519 131029289 + 2.5 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 12005 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 844.167 chr11 29647369 29647830 + 2.5 NA Intergenic Intergenic 28797 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 438.166 chr10 48630560 48630810 + 2.33333 NA intron (NM_001347738, intron 2 of 10) L1MCa|LINE|L1 21817 NM_001256025 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 606-4 chr6 55051508 55051903 + 2.33333 NA Intergenic Intergenic -54755 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 460.499 chr1 20100851 20101131 + 2.33333 NA Intergenic Intergenic 18545 NM_012400 26279 Hs.189507 NM_012400 ENSG00000117215 PLA2G2D PLA2IID|SPLASH|sPLA2-IID|sPLA2S phospholipase A2 group IID protein-coding 381.501 chr1 52971313 52971609 + 2.33333 NA intron (NM_001193600, intron 5 of 14) MER39B|LTR|ERV1 -43476 NM_001007099 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 471-2 chr14 68140466 68140874 + 2.33333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 317078 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 462-2 chr7 80937822 80938250 + 2.33333 NA Intergenic Intergenic -15647 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 952.499 chr1 119274798 119275750 + 2.33333 NA non-coding (NR_125975, exon 7 of 7) non-coding (NR_125975, exon 7 of 7) -52978 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 446.999 chr5 105067648 105067938 + 2.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -31681 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 450.333-6 chr2 34774122 34774411 + 2.33333 NA Intergenic Intergenic 96709 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 190-6 chr10 86349593 86349726 + 2.33333 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 17136 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 401.333-6 chr21 33189846 33190056 + 2.33333 NA Intergenic Intergenic -19715 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 795.833-3 chr5 171907654 171908335 + 2.33333 NA intron (NM_012300, intron 3 of 12) intron (NM_012300, intron 3 of 12) 98879 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 948.833-2 chr8 92068891 92069911 + 2.33333 NA intron (NM_001198632, intron 1 of 11) intron (NM_001198632, intron 1 of 11) -6767 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 1194.33-3 chr3 13650394 13651500 + 2.33333 NA intron (NR_027103, intron 1 of 5) Charlie4a|DNA|hAT-Charlie 226 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 365.667-9 chr5 39271848 39272135 + 2.33333 NA Intergenic Intergenic -1342 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 344-16 chr7 11770798 11770992 + 2.33333 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 61303 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 818-3 chr12 26434215 26434887 + 2.33333 NA intron (NM_002223, intron 48 of 56) intron (NM_002223, intron 48 of 56) 238978 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 824.5 chr3 33635792 33636584 + 2.33333 NA intron (NM_015097, intron 8 of 38) L1MC4|LINE|L1 23491 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 282.333-15 chr6 155174871 155175109 + 2.33333 NA intron (NM_012454, intron 8 of 25) intron (NM_012454, intron 8 of 25) -41976 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 403.833-6 chr6 136317011 136317611 + 2.33333 NA Intergenic Intergenic -27460 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 438.166-2 chr17 55601745 55601950 + 2.33333 NA Intergenic L1MB2|LINE|L1 121017 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 268.5-16 chr19 47079211 47079529 + 2.33333 NA intron (NM_015168, intron 11 of 14) MER33|DNA|hAT-Charlie -30746 NM_017854 54958 Hs.105606 NM_017854 ENSG00000130748 TMEM160 - transmembrane protein 160 protein-coding 247.833-20 chr7 30386282 30386556 + 2.33333 NA Intergenic L1ME3G|LINE|L1 -4466 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 310.666-6 chr7 132034334 132034509 + 2.33333 NA Intergenic Intergenic 124201 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 939.667-2 chr5 35650937 35652016 + 2.33333 NA intron (NM_144722, intron 6 of 9) Charlie17a|DNA|hAT-Charlie 33613 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 262.833-13 chr5 172637162 172637328 + 2.33333 NA Intergenic Intergenic -4018 NM_001308178 54492 Hs.91521 NM_001142651 ENSG00000214357 NEURL1B NEURL3|RNF67B|hNeur2|neur2 neuralized E3 ubiquitin protein ligase 1B protein-coding 621.167-4 chr3 181210171 181210787 + 2.33333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -21258 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 631.167 chr12 56119191 56119886 + 2.33333 NA intron (NM_001303125, intron 2 of 2) intron (NM_001303125, intron 2 of 2) 1121 NM_001303125 84872 Hs.632706 NM_032786 ENSG00000135482 ZC3H10 ZC3HDC10 zinc finger CCCH-type containing 10 protein-coding 521.667 chr16 71542085 71542502 + 2.33333 NA Intergenic L2a|LINE|L2 15867 NM_001166395 10164 Hs.251383 NM_005769 ENSG00000140835 CHST4 GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST carbohydrate sulfotransferase 4 protein-coding 404.499 chr5 39359608 39359903 + 2.33333 NA intron (NM_001737, intron 1 of 10) intron (NM_001737, intron 1 of 10) 4740 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 733.666 chr13 85816409 85816873 + 2.33333 NA Intergenic Intergenic -17222 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 326.667-7 chr4 177401268 177401441 + 2.33333 NA Intergenic AluY|SINE|Alu 41083 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 972.499 chr12 76621257 76621890 + 2.33333 NA Intergenic Intergenic -61802 NM_001003712 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 620.667-2 chr2 212862604 212863811 + 2.33333 NA Intergenic L1M3f|LINE|L1 -63050 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 418.333 chr10 123026843 123027123 + 2.33333 NA intron (NM_001609, intron 1 of 10) intron (NM_001609, intron 1 of 10) 17977 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 572.166 chr7 128398692 128398977 + 2.33333 NA intron (NM_183243, intron 7 of 14) intron (NM_183243, intron 7 of 14) 7161 NM_001142574 3614 Hs.654401 NM_000883 ENSG00000106348 IMPDH1 IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608 inosine monophosphate dehydrogenase 1 protein-coding 435.5-4 chr14 28828115 28828664 + 2.33333 NA Intergenic Intergenic -42602 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 403.333-4 chr21 27587410 27587660 + 2.33333 NA Intergenic Intergenic -134844 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 697.667-5 chr3 122258906 122259726 + 2.33333 NA intron (NM_001178065, intron 3 of 6) intron (NM_001178065, intron 3 of 6) -65932 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 755.833 chr8 102239105 102239923 + 2.33333 NA promoter-TSS (NM_001172478) promoter-TSS (NM_001172478) 63 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 366.334-13 chr7 107678152 107678384 + 2.33333 NA intron (NM_000441, intron 6 of 20) L2a|LINE|L2 -16470 NR_028137 286002 Hs.512611 NR_028137 SLC26A4-AS1 - SLC26A4 antisense RNA 1 ncRNA 724 chr14 87805146 87805650 + 2.33333 NA Intergenic MER90a|LTR|ERV1 -150104 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 304.333 chr1 86780531 86780714 + 2.33333 NA Intergenic L1MC4|LINE|L1 76046 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 246.333-5 chr1 105489291 105489443 + 2.33333 NA Intergenic LTR49-int|LTR|ERV1 129568 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 395.333-7 chr20 35730218 35730609 + 2.33333 NA intron (NR_040722, intron 5 of 17) intron (NR_040722, intron 5 of 17) 11847 NM_004902 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 272-18 chr15 67613649 67614098 + 2.33333 NA intron (NM_001206804, intron 8 of 21) MER135|DNA|DNA 64779 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 541-3 chr15 98357606 98358042 + 2.33333 NA intron (NR_146567, intron 1 of 2) L1M5|LINE|L1 -26266 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 417.166-4 chr14 75259033 75259772 + 2.33333 NA Intergenic Intergenic -19426 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 395.667-2 chr11 82775863 82776149 + 2.33333 NA Intergenic L1M1|LINE|L1 -42142 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 651.833 chr1 174114756 174115629 + 2.33333 NA Intergenic Intergenic 44095 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 296.333-4 chr14 62366317 62366581 + 2.33333 NA Intergenic MER89-int|LTR|ERV1 -226476 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 509.5 chr1 38835174 38835672 + 2.33333 NA Intergenic Intergenic 24349 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 404.833-7 chrX 27336476 27336750 + 2.33333 NA Intergenic Intergenic 126728 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 258.333-19 chr7 48017311 48017464 + 2.33333 NA intron (NM_001030019, intron 2 of 9) intron (NM_001030019, intron 2 of 9) 11720 NM_001284350 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 230-22 chr18 77478719 77478828 + 2.33333 NA Intergenic Intergenic 228925 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 269.5-27 chr9 38430992 38431236 + 2.33333 NA Intergenic ERVL-E-int|LTR|ERVL -6660 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 644.166 chr7 138008979 138009445 + 2.33333 NA Intergenic AluJo|SINE|Alu -7126 NM_001253775 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 511.334 chr1 112546673 112547044 + 2.33333 NA intron (NM_138728, intron 12 of 13) (TA)n|Simple_repeat|Simple_repeat 37893 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 476.166 chr15 62119242 62119575 + 2.33333 NA Intergenic Intergenic 45877 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 642.666 chr16 82178171 82178534 + 2.33333 NA Intergenic Intergenic -8128 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 699.833 chr2 208407570 208408115 + 2.33333 NA intron (NM_005048, intron 1 of 12) intron (NM_005048, intron 1 of 12) 1012 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 312-6 chr14 20546568 20546735 + 2.33333 NA Intergenic Intergenic 14280 NM_001289110 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 240.666-7 chr21 29042009 29042132 + 2.33333 NA exon (NM_006447, exon 11 of 18) exon (NM_006447, exon 11 of 18) 17402 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 564.5 chr1 6246175 6247094 + 2.33333 NA TTS (NM_207370) TTS (NM_207370) 2455 NM_001024598 390992 Hs.532677 NM_001024598 ENSG00000173673 HES3 bHLHb43 hes family bHLH transcription factor 3 protein-coding 493.999-2 chr2 81006749 81007278 + 2.33333 NA Intergenic L1MEc|LINE|L1 459933 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 779.666-2 chr5 126353791 126354590 + 2.33333 NA Intergenic Intergenic -5930 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 323.333-6 chr11 61899238 61899637 + 2.33333 NA intron (NM_013401, intron 8 of 9) intron (NM_013401, intron 8 of 9) -7892 NM_021727 3995 Hs.21765 NM_021727 ENSG00000221968 FADS3 CYB5RP|LLCDL3 fatty acid desaturase 3 protein-coding 1077.83 chr11 123580267 123580998 + 2.33333 NA intron (NM_001286563, intron 3 of 20) intron (NM_001286563, intron 3 of 20) 20370 NM_001286564 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 376-4 chr2 25567634 25567853 + 2.33333 NA intron (NM_001320937, intron 8 of 8) intron (NM_001320937, intron 8 of 8) 82479 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 835.499 chr5 174410567 174411174 + 2.33333 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 74516 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 664.667 chr1 24394117 24394568 + 2.33333 NA intron (NM_001199014, intron 2 of 9) L1ME3A|LINE|L1 -19145 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 398.833-9 chr3 157351951 157352342 + 2.33333 NA intron (NM_024621, intron 9 of 13) L4_A_Mam|LINE|RTE-X -84704 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 446.668 chr5 142654424 142654813 + 2.33333 NA intron (NM_001144935, intron 1 of 3) intron (NM_001144935, intron 1 of 3) -10317 NM_001257210 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 238.166-7 chr8 105754319 105754429 + 2.33333 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 306129 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 592.833-2 chr5 59007275 59008088 + 2.33333 NA intron (NM_006203, intron 6 of 14) intron (NM_006203, intron 6 of 14) -7783 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 409.333-5 chr3 185983439 185983779 + 2.33333 NA Intergenic Intergenic 23666 NR_151491 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 396.666-2 chr17 76523026 76523218 + 2.33333 NA Intergenic Intergenic -4464 NR_033357 768206 Hs.634380 NM_001077620 ENSG00000214140 PRCD RP36 photoreceptor disc component protein-coding 463.001 chr1 109490452 109490768 + 2.33333 NA intron (NM_001350177, intron 10 of 11) intron (NM_001350177, intron 10 of 11) -3426 NM_001134402 284613 Hs.514682 NM_182580 ENSG00000174151 CYB561D1 - cytochrome b561 family member D1 protein-coding 368 chr1 231829103 231829368 + 2.33333 NA intron (NM_001164541, intron 9 of 9) L1ME4c|LINE|L1 -10718 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 628-3 chr14 81565547 81566150 + 2.33333 NA Intergenic MIRb|SINE|MIR -31987 NM_001244984 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 510.333 chr17 69997497 69997927 + 2.33333 NA Intergenic Intergenic 36005 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 973.667 chr2 177263355 177264004 + 2.33333 NA 5' UTR (NM_001145413, exon 1 of 5) 5' UTR (NM_001145413, exon 1 of 5) 452 NM_001145412 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|IMDDHH|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 451.999-2 chr11 114513714 114514075 + 2.33333 NA Intergenic L1ME4b|LINE|L1 45987 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 731.999 chr22 41526630 41527307 + 2.33333 NA 3' UTR (NM_001018052, exon 5 of 5) 3' UTR (NM_001018052, exon 5 of 5) 17502 NM_001018050 171568 Hs.712617 NM_138338 ENSG00000100413 POLR3H RPC22.9|RPC8 RNA polymerase III subunit H protein-coding 735.5-2 chr12 59808545 59809422 + 2.33333 NA Intergenic Intergenic 119613 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 527.334-3 chr2 199973483 199973915 + 2.33333 NA Intergenic Intergenic -18208 NM_001039693 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 592.501 chr17 82494572 82495111 + 2.33333 NA Intergenic Intergenic -24891 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 335.667-12 chr20 53656849 53657202 + 2.33333 NA Intergenic Intergenic 48671 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 828.668 chr6 87078903 87079441 + 2.33333 NA Intergenic Charlie17b|DNA|hAT-Charlie 15934 NM_001252383 1081 Hs.119689 NM_000735 ENSG00000135346 CGA CG-ALPHA|FSHA|GPA1|GPHA1|GPHa|HCG|LHA|TSHA glycoprotein hormones, alpha polypeptide protein-coding 456.667-4 chr3 75171575 75172034 + 2.33333 NA Intergenic Intergenic -42672 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 450 chr1 40517096 40517343 + 2.33333 NA Intergenic Intergenic 8500 NM_001346956 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 514.166-3 chr9 25668049 25668383 + 2.33333 NA Intergenic Intergenic 10642 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 171.5-25 chr2 83516203 83516306 + 2.33333 NA Intergenic Intergenic -6560 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 450-6 chr3 80695240 80695492 + 2.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -69531 NR_147143 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 1458.5-2 chr7 51429861 51431065 + 2.33333 NA Intergenic Intergenic -37207 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 370-10 chr22 35306559 35306809 + 2.33333 NA intron (NR_156428, intron 1 of 13) MIR|SINE|MIR 6790 NR_024195 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 455.001-3 chr2 30113086 30114160 + 2.33333 NA Intergenic Intergenic -33384 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 470.168 chr2 193365441 193365843 + 2.33333 NA Intergenic Intergenic 615797 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 281.167-15 chr2 127709062 127709234 + 2.33333 NA intron (NM_018383, intron 20 of 21) Charlie1a|DNA|hAT-Charlie 7651 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 352.5 chr10 12397078 12397352 + 2.33333 NA intron (NM_001351032, intron 2 of 11) intron (NM_001351032, intron 2 of 11) 8233 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 1439.5 chr4 71009013 71010542 + 2.33333 NA intron (NM_000788, intron 2 of 6) intron (NM_000788, intron 2 of 6) 16128 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 706.999 chr12 113048438 113049052 + 2.33333 NA Intergenic L1MB2|LINE|L1 -9112 NM_004416 1840 Hs.372152 NM_004416 ENSG00000135144 DTX1 RNF140|hDx-1 deltex E3 ubiquitin ligase 1 protein-coding 564.834-2 chr20 7094374 7094847 + 2.33333 NA Intergenic ERVL-E-int|LTR|ERVL 159592 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 272.667-11 chr12 110602325 110602597 + 2.33333 NA Intergenic Intergenic -11668 NM_001173975 79600 Hs.211511 NM_024549 ENSG00000204852 TCTN1 JBTS13|TECT1 tectonic family member 1 protein-coding 521.333-5 chr19 53196169 53196486 + 2.33333 NA Intergenic Intergenic -2969 NM_001353457 79788 Hs.745230 NM_024733 ENSG00000197497 ZNF665 ZFP160L zinc finger protein 665 protein-coding 544.333-4 chr9 131733778 131734343 + 2.33333 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 3478 NM_005312 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 477.5 chr10 35563172 35563455 + 2.33333 NA intron (NM_181698, intron 10 of 11) intron (NM_181698, intron 10 of 11) -42028 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 487.667-5 chr8 125218990 125219311 + 2.33333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 127290 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 424.666-3 chr2 174919345 174919567 + 2.33333 NA intron (NM_001025201, intron 4 of 12) intron (NM_001025201, intron 4 of 12) -71838 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 386.333-2 chr14 91458560 91458760 + 2.33333 NA non-coding (NR_158976, exon 17 of 17) non-coding (NR_158976, exon 17 of 17) -40840 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|HYC1|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 337.999-5 chr8 102050733 102050995 + 2.33333 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 66432 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 744.499 chr2 134245353 134245814 + 2.33333 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) -8489 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 371.166 chr17 74438675 74439004 + 2.33333 NA intron (NM_018653, intron 1 of 3) intron (NM_018653, intron 1 of 3) 5142 NM_018653 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 276.833-4 chr13 20419566 20419750 + 2.33333 NA intron (NM_001363647, intron 4 of 6) AluSp|SINE|Alu 14188 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 474.667-8 chr8 118725032 118725294 + 2.33333 NA intron (NR_038210, intron 4 of 4) MLT1I|LTR|ERVL-MaLR -103200 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 490.166-4 chr9 85900377 85900918 + 2.33333 NA Intergenic MSTD|LTR|ERVL-MaLR -40495 NM_001321881 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 968.833-2 chr2 127064637 127065219 + 2.33333 NA intron (NM_139349, intron 6 of 14) intron (NM_139349, intron 6 of 14) 17137 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 359.5-12 chr9 9790402 9790749 + 2.33333 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) -8817 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 540.666-6 chr9 71680300 71680622 + 2.33333 NA Intergenic Intergenic 88052 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 522.666-2 chr16 48882152 48882389 + 2.33333 NA Intergenic Intergenic -272090 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 1196.83 chr7 144127209 144128473 + 2.33333 NA Intergenic Intergenic -1272 NM_001001659 135941 Hs.534547 NM_001001659 ENSG00000221938 OR2A14 OR2A14P|OR2A6|OST182 olfactory receptor family 2 subfamily A member 14 protein-coding 594.833 chr12 124766909 124767416 + 2.33333 NA Intergenic Intergenic 72509 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 340.833-3 chr2 65553113 65553488 + 2.33333 NA Intergenic Intergenic -120701 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 249.333-11 chr15 67462709 67462863 + 2.33333 NA intron (NR_040051, intron 3 of 5) intron (NR_040051, intron 3 of 5) 58187 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 403.833-4 chr17 57911988 57912290 + 2.33333 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -8750 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 611.167-4 chr3 114508446 114508928 + 2.33333 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 55094 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 683.667 chr11 14519962 14520844 + 2.33333 NA promoter-TSS (NM_002786) promoter-TSS (NM_002786) 42 NM_002786 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 431.667-5 chrX 146595103 146595370 + 2.33333 NA Intergenic L1MA2|LINE|L1 -214535 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 555.333-4 chr17 27197295 27197659 + 2.33333 NA Intergenic LTR13|LTR|ERVK 96519 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 318.5-9 chr5 19332513 19332729 + 2.33333 NA Intergenic MER75B|DNA|PiggyBac 553651 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 569.666 chr17 17354690 17355132 + 2.33333 NA Intergenic Intergenic 51538 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 339.5-14 chr6 44136727 44137225 + 2.33333 NA intron (NM_001318792, intron 5 of 23) AluY|SINE|Alu 9422 NM_018426 55362 Hs.414473 NM_018426 ENSG00000137216 TMEM63B C6orf110 transmembrane protein 63B protein-coding 431.333-6 chr7 85779814 85780057 + 2.33333 NA Intergenic Intergenic 358813 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 332.333-10 chr5 130388187 130388411 + 2.33333 NA Intergenic Intergenic 483834 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 401-4 chr8 46394081 46394426 + 2.33333 NA Intergenic ALR/Alpha|Satellite|centr 223390 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 237.333-15 chr15 68459692 68459852 + 2.33333 NA Intergenic L1ME3D|LINE|L1 -27609 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 768.501 chr1 242454562 242455355 + 2.33333 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) -5476 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 438.499 chr13 26113073 26113294 + 2.33333 NA Intergenic Intergenic -53661 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 491.501-2 chr9 72193463 72193920 + 2.33333 NA intron (NM_001351571, intron 1 of 13) L1M1|LINE|L1 44251 NM_001242506 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 434.333-5 chr4 28742449 28742713 + 2.33333 NA Intergenic L1MA7|LINE|L1 -77001 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 285.333-6 chr2 201048050 201048179 + 2.33333 NA intron (NM_001321629, intron 1 of 12) L1MEg|LINE|L1 23557 NM_001321622 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 241.333-11 chr13 84575004 84575187 + 2.33333 NA intron (NR_046871, intron 6 of 6) intron (NR_046871, intron 6 of 6) -208559 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 840.833-3 chr16 81035196 81035839 + 2.33333 NA promoter-TSS (NM_015251) promoter-TSS (NM_015251) -325 NM_015251 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 368.833-3 chr2 212568604 212568890 + 2.33333 NA Intergenic Intergenic -29945 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 682 chr14 68863165 68863935 + 2.33333 NA Intergenic Intergenic -67307 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 405.666 chr14 53667950 53668287 + 2.33333 NA Intergenic MARNA|DNA|TcMar-Mariner 280366 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 635 chr14 74666380 74666837 + 2.33333 NA intron (NM_001039479, intron 17 of 19) L2a|LINE|L2 46472 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 432.333-6 chr18 11040082 11040270 + 2.33333 NA intron (NM_022068, intron 2 of 51) L4_C_Mam|LINE|RTE-X 108586 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 403.667-3 chr2 217692189 217692403 + 2.33333 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 64297 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 256.667-8 chr12 90053880 90054085 + 2.33333 NA Intergenic Intergenic 106289 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 615.666-2 chr6 50656415 50657186 + 2.33333 NA Intergenic Intergenic -56744 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 386.166 chr11 40947000 40947580 + 2.33333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 512346 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 693.834 chr22 41941223 41941922 + 2.33333 NA intron (NM_001002876, intron 4 of 4) intron (NM_001002876, intron 4 of 4) -1353 NM_001110215 79019 Hs.208912 NM_024053 ENSG00000100162 CENPM C22orf18|CENP-M|PANE1 centromere protein M protein-coding 863.834-2 chr8 32162500 32163332 + 2.33333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 136698 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 790.833 chr3 137971347 137971970 + 2.33333 NA Intergenic MER33|DNA|hAT-Charlie -27158 NM_001002026 51208 Hs.655324 NM_016369 ENSG00000066405 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 554.666 chr15 70062329 70062795 + 2.33333 NA intron (NM_020908, intron 8 of 19) intron (NM_020908, intron 8 of 19) 16906 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 752.5-2 chr17 41930356 41931032 + 2.33333 NA promoter-TSS (NR_110662) promoter-TSS (NR_110662) 77 NR_146622 83538 Hs.201134 NM_031421 ENSG00000204815 TTC25 - tetratricopeptide repeat domain 25 protein-coding 290.501-2 chr14 92106777 92107021 + 2.33333 NA promoter-TSS (NM_030660) promoter-TSS (NM_030660) -278 NM_001127697 4287 Hs.532632 NM_004993 ENSG00000066427 ATXN3 AT3|ATX3|JOS|MJD|MJD1|SCA3 ataxin 3 protein-coding 280-8 chr15 40582806 40583108 + 2.33333 NA Intergenic MER51A|LTR|ERV1 -11292 NM_144508 57082 Hs.181855 NM_144508 ENSG00000137812 KNL1 AF15Q14|CASC5|CT29|D40|MCPH4|PPP1R55|Spc7|hKNL-1|hSpc105 kinetochore scaffold 1 protein-coding 369.666-3 chr7 15896146 15896499 + 2.33333 NA Intergenic L1MC1|LINE|L1 207944 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 294.833-9 chr6 144488331 144488532 + 2.33333 NA intron (NM_007124, intron 28 of 73) intron (NM_007124, intron 28 of 73) 82776 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 432.833-3 chr4 11535551 11535826 + 2.33333 NA Intergenic L1M4|LINE|L1 -106794 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 381.5-9 chr5 152235031 152235285 + 2.33333 NA intron (NR_109876, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 170121 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 1165.17-2 chr2 166539119 166540069 + 2.33333 NA Intergenic Intergenic -52623 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 339.166 chr11 104241818 104241987 + 2.33333 NA Intergenic Intergenic -77755 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 564.666-2 chr2 13027722 13028178 + 2.33333 NA Intergenic Intergenic -20937 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 312.5-6 chr12 5007176 5007547 + 2.33333 NA Intergenic L1MA9|LINE|L1 -36518 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 453.166 chr9 104176925 104177240 + 2.33333 NA Intergenic MER63D|DNA|hAT-Blackjack 82455 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 290.333-3 chr1 105101956 105102131 + 2.33333 NA Intergenic Intergenic 516892 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 450.5-4 chr5 146541724 146542506 + 2.33333 NA Intergenic Intergenic -26002 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 534.667-2 chr2 63732320 63732737 + 2.33333 NA Intergenic Intergenic -108436 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 746.666-3 chr6 127539092 127539708 + 2.33333 NA Intergenic Intergenic -20376 NM_001012279 387104 Hs.319247 NM_001012279 ENSG00000255330 SOGA3 C6orf174|dJ403A15.3 SOGA family member 3 protein-coding 240.5-11 chr17 76558901 76559139 + 2.33333 NA TTS (NR_004397) TTS (NR_004397) 230 NR_004397 677850 NR_004397 ENSG00000274091 SNORD1C R38C|snR38C small nucleolar RNA, C/D box 1C snoRNA 292.166-4 chr2 177333507 177333701 + 2.33333 NA intron (NR_026966, intron 3 of 8) L2c|LINE|L2 -19722 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 430.333-6 chrX 41115292 41115527 + 2.33333 NA intron (NM_001039591, intron 1 of 44) intron (NM_001039591, intron 1 of 44) 29964 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 488.333-2 chr15 24946244 24946505 + 2.33333 NA intron (NM_001349456, intron 4 of 12) AluJb|SINE|Alu -8519 NM_003097 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 965.498 chr7 5562107 5562975 + 2.33333 NA Intergenic L2a|LINE|L2 -30275 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 912.665 chr3 115784036 115784729 + 2.33333 NA Intergenic CpG 120744 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 1115 chr1 93304435 93305473 + 2.33333 NA Intergenic Intergenic 40857 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 230-10 chr11 33329660 33329955 + 2.33333 NA intron (NM_001278162, intron 3 of 15) intron (NM_001278162, intron 3 of 15) -46301 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 530.666 chr3 4649930 4650219 + 2.33333 NA intron (NM_001168272, intron 10 of 60) L1MB7|LINE|L1 101516 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 506.5 chr12 50167300 50167863 + 2.33333 NA promoter-TSS (NM_001331070) promoter-TSS (NM_001331070) -48 NM_001281731 91012 Hs.270525 NM_147190 ENSG00000139624 CERS5 LASS5|Trh4 ceramide synthase 5 protein-coding 332.166 chr1 30782456 30782731 + 2.33333 NA Intergenic Intergenic -24819 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 273-29 chr8 71627702 71627882 + 2.33333 NA Intergenic Intergenic -79698 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 298.667-6 chr12 112387510 112387841 + 2.33333 NA Intergenic AluY|SINE|Alu -5244 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 527.833 chr11 10920733 10921178 + 2.33333 NA Intergenic Intergenic 62738 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 232.333-11 chr17 74569621 74569807 + 2.33333 NA Intergenic Intergenic -2371 NM_001324073 100130520 NM_001324073 ENSG00000284690 CD300H CD300Hs CD300H molecule (gene/pseudogene) protein-coding 319.166-2 chr14 100376276 100376452 + 2.33333 NA promoter-TSS (NM_001350947) promoter-TSS (NM_001350947) -37 NM_173701 7453 Hs.497599 NM_004184 ENSG00000140105 WARS GAMMA-2|HMN9|IFI53|IFP53 tryptophanyl-tRNA synthetase protein-coding 337.333-6 chr18 2323765 2323994 + 2.33333 NA Intergenic L1MC5a|LINE|L1 247626 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 358-10 chr5 54523235 54523572 + 2.33333 NA intron (NM_001145427, intron 1 of 1) intron (NM_001145427, intron 1 of 1) 5644 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 230.333-2 chr10 20659050 20659248 + 2.33333 NA Intergenic Intergenic 107179 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 830.166 chr7 114081856 114082418 + 2.33333 NA Intergenic Intergenic -4190 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 359.334-5 chr5 172480848 172481082 + 2.33333 NA Intergenic L1MC5|LINE|L1 -26440 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 506.667-5 chr17 4888977 4889287 + 2.33333 NA intron (NM_015716, intron 12 of 30) intron (NM_015716, intron 12 of 30) -10404 NM_001145536 100130311 Hs.579243 NM_001145536 ENSG00000205710 C17orf107 - chromosome 17 open reading frame 107 protein-coding 390.333-3 chr11 5808412 5808863 + 2.33333 NA Intergenic HERVI-int|LTR|ERV1 -11699 NM_001005174 390077 Hs.553737 NM_001005174 ENSG00000180988 OR52N2 OR11-57 olfactory receptor family 52 subfamily N member 2 protein-coding 652.499 chr1 92310001 92310613 + 2.33333 NA intron (NM_024813, intron 6 of 12) intron (NM_024813, intron 6 of 12) 11248 NM_024813 79871 Hs.444421 NM_024813 ENSG00000122484 RPAP2 C1orf82|Rtr1 RNA polymerase II associated protein 2 protein-coding 396.333-3 chr2 49909414 49909632 + 2.33333 NA Intergenic Intergenic 64680 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 352.666-2 chr10 82789380 82789588 + 2.33333 NA intron (NR_163252, intron 3 of 8) L1M4|LINE|L1 -556564 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 377.501-4 chr7 76314391 76314728 + 2.33333 NA Intergenic Intergenic 11886 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 550.5-5 chrX 155216021 155216680 + 2.33333 NA promoter-TSS (NM_001303543) promoter-TSS (NM_001303543) -74 NM_001303545 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 318.667-4 chr18 27797314 27797570 + 2.33333 NA Intergenic LTR37B|LTR|ERV1 239199 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 421.334-4 chr4 107259872 107260113 + 2.33333 NA Intergenic Intergenic -223679 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 270.666-3 chr13 36207032 36207167 + 2.33333 NA intron (NM_001198910, intron 6 of 15) intron (NM_001198910, intron 6 of 15) 7457 NM_017826 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 732.998 chr1 118290736 118291377 + 2.33333 NA Intergenic X6A_LINE|LINE|CR1 -105828 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 692.166 chr11 115989657 115990391 + 2.33333 NA Intergenic Intergenic -229824 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 393.5-12 chr8 129032966 129033248 + 2.33333 NA Intergenic Intergenic -67106 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 281.333-14 chr18 9644313 9644441 + 2.33333 NA Intergenic Intergenic 29113 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 289.666-3 chr4 32185596 32185814 + 2.33333 NA Intergenic Intergenic -163283 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 430.333-3 chr2 20584663 20585050 + 2.33333 NA Intergenic Intergenic 7692 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 549.667-4 chr2 240021654 240022127 + 2.33333 NA intron (NR_136157, intron 1 of 7) MIRc|SINE|MIR 3452 NM_004544 4705 Hs.277677 NM_004544 ENSG00000130414 NDUFA10 CI-42KD|CI-42k|MC1DN22 NADH:ubiquinone oxidoreductase subunit A10 protein-coding 441.499 chr11 82173253 82173474 + 2.33333 NA intron (NR_120571, intron 3 of 7) MamGypLTR3a|LTR|Gypsy 230550 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 560-2 chr18 2214309 2214620 + 2.33333 NA Intergenic L1MEf|LINE|L1 357041 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 299.666-7 chr6 116268636 116268991 + 2.33333 NA intron (NM_001322937, intron 2 of 6) intron (NM_001322937, intron 2 of 6) -11273 NM_001080976 29940 Hs.458358 NM_013352 ENSG00000111817 DSE DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 329.5 chr10 77179220 77179501 + 2.33333 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 38529 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 432.999 chr14 49863376 49863585 + 2.33333 NA promoter-TSS (NR_027260) promoter-TSS (NR_027260) -631 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 609-2 chr11 18634440 18634904 + 2.33333 NA promoter-TSS (NM_194285) promoter-TSS (NM_194285) -330 NM_194285 144108 Hs.738650 NM_194285 ENSG00000179119 SPTY2D1 Spt2 SPT2 chromatin protein domain containing 1 protein-coding 270-42 chr8 137076689 137076856 + 2.33333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 336816 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 425.999 chr4 177548198 177548471 + 2.33333 NA Intergenic MER21A|LTR|ERVL -105831 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 497.667-4 chr4 46271673 46272122 + 2.33333 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 117482 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 759.499 chr1 165924468 165925255 + 2.33333 NA Intergenic Intergenic 16940 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 447.5 chr11 18114454 18114833 + 2.33333 NA intron (NR_026576, intron 1 of 2) intron (NR_026576, intron 1 of 2) 1489 NR_026576 6290 Hs.454496 NR_026576 ENSG00000166787 SAA3P SAA3 serum amyloid A3, pseudogene pseudo 427.5-2 chr11 88497321 88497581 + 2.33333 NA Intergenic L1MB1|LINE|L1 -7125 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 384.833-8 chr7 77473648 77473880 + 2.33333 NA Intergenic MER5A|DNA|hAT-Charlie -57415 NM_001350900 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 570.834-2 chr2 125745819 125746774 + 2.33333 NA Intergenic Intergenic 371689 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 459-4 chr3 153769026 153769573 + 2.33333 NA Intergenic L1PA15-16|LINE|L1 -6773 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 526.499 chr8 132021767 132022118 + 2.33333 NA Intergenic LTR40a|LTR|ERVL 37440 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 329.666-7 chr5 138465172 138465489 + 2.33333 NA promoter-TSS (NM_001964) promoter-TSS (NM_001964) -149 NM_001964 1958 Hs.326035 NM_001964 ENSG00000120738 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 513.667 chr17 42249861 42250486 + 2.33333 NA intron (NM_012448, intron 1 of 18) intron (NM_012448, intron 1 of 18) 26233 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 408.666-3 chr22 20760186 20760372 + 2.33333 NA intron (NM_058004, intron 23 of 54) intron (NM_058004, intron 23 of 54) -13834 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 259.666-7 chr5 110441161 110441329 + 2.33333 NA intron (NM_001039763, intron 12 of 13) MER20|DNA|hAT-Charlie 72670 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 327-8 chr14 77246584 77246816 + 2.33333 NA intron (NM_020431, intron 18 of 23) intron (NM_020431, intron 18 of 23) -19518 NR_031661 100302236 NR_031661 ENSG00000221754 MIR1260A MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a microRNA 1260a ncRNA 491.833 chr19 37228200 37228478 + 2.33333 NA intron (NM_152604, intron 1 of 4) LTR13|LTR|ERVK 1875 NM_152604 163087 Hs.590975 NM_152604 ENSG00000188283 ZNF383 HSD17 zinc finger protein 383 protein-coding 624 chr1 117059694 117060514 + 2.33333 NA promoter-TSS (NR_110786) promoter-TSS (NR_110786) -222 NM_003594 8458 Hs.32333 NM_003594 ENSG00000116830 TTF2 HuF2|ZGRF6 transcription termination factor 2 protein-coding 457.5 chr12 77715107 77715495 + 2.33333 NA Intergenic Intergenic -115593 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 603.666 chr10 104369674 104370005 + 2.33333 NA intron (NM_001008723, intron 6 of 17) intron (NM_001008723, intron 6 of 17) 16006 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 429.167-11 chr5 28944226 28944560 + 2.33333 NA Intergenic Intergenic 17523 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 833.5 chr10 70924837 70926025 + 2.33333 NA Intergenic Intergenic -13622 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 365.333-5 chr11 122633077 122633373 + 2.33333 NA Intergenic MIR|SINE|MIR -22497 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 352.999-3 chr6 138238221 138238445 + 2.33333 NA intron (NM_020340, intron 5 of 33) intron (NM_020340, intron 5 of 33) -19843 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 319.667-5 chr15 90954687 90954892 + 2.33333 NA promoter-TSS (NM_033544) promoter-TSS (NM_033544) -87 NM_001017919 91433 Hs.655895 NM_033544 ENSG00000166965 RCCD1 - RCC1 domain containing 1 protein-coding 795.999 chr9 107425184 107425705 + 2.33333 NA intron (NR_121581, intron 7 of 7) intron (NR_121581, intron 7 of 7) 41141 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 476.334-6 chr6 148166292 148166770 + 2.33333 NA Intergenic Intergenic -105797 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 255.333-8 chr12 27343780 27343898 + 2.33333 NA intron (NM_001248003, intron 1 of 14) intron (NM_001248003, intron 1 of 14) 11003 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 849.833 chr3 180804422 180805448 + 2.33333 NA intron (NR_109986, intron 3 of 13) intron (NR_109986, intron 3 of 13) 65243 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 682.665 chr5 35924833 35925527 + 2.33333 NA intron (NM_144647, intron 1 of 4) intron (NM_144647, intron 1 of 4) 13442 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 406.167-6 chr14 71130712 71131052 + 2.33333 NA Intergenic MER41B|LTR|ERV1 -189594 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 663.167 chr22 26757573 26758189 + 2.33333 NA intron (NR_110543, intron 2 of 5) L1MB7|LINE|L1 85038 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 324.666-6 chr8 131615018 131615166 + 2.33333 NA Intergenic Intergenic -289001 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 409.833-6 chr3 128787711 128787947 + 2.33333 NA intron (NM_004637, intron 1 of 5) AluJr|SINE|Alu -58979 NR_162138 113219457 NR_162138 MIR12124 - microRNA 12124 ncRNA 539.833 chr12 113439316 113439923 + 2.33333 NA Intergenic Intergenic 17229 NM_138432 113675 Hs.337594 NM_138432 ENSG00000139410 SDSL SDH 2|SDS-RS1|TDH|cSDH serine dehydratase like protein-coding 492.333 chr12 3404175 3404616 + 2.33333 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) 23046 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 727.666-2 chr3 159828395 159829028 + 2.33333 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -11150 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 437.333 chr12 69708803 69709019 + 2.33333 NA Intergenic L1MB5|LINE|L1 -9495 NM_001282614 144453 Hs.280782 NM_032735 ENSG00000127325 BEST3 VMD2L3 bestrophin 3 protein-coding 638.834 chrX 16882268 16883381 + 2.33333 NA Intergenic LTR105_Mam|LTR|ERVL -12462 NM_002893 5931 Hs.495755 NM_002893 ENSG00000102054 RBBP7 RbAp46 RB binding protein 7, chromatin remodeling factor protein-coding 239.5-42 chr8 137301953 137302135 + 2.33333 NA Intergenic Intergenic 111544 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 373-13 chr8 50825341 50825668 + 2.33333 NA Intergenic L1ME3C|LINE|L1 661373 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 824.833 chr2 187452910 187453668 + 2.33333 NA Intergenic Intergenic -5037 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 310-19 chr2 145777397 145777578 + 2.33333 NA Intergenic Intergenic -809570 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 531.833 chr12 76037273 76037573 + 2.33333 NA 3' UTR (NM_004537, exon 15 of 15) 3' UTR (NM_004537, exon 15 of 15) -5647 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 303-3 chr10 89652599 89652814 + 2.33333 NA Intergenic L2c|LINE|L2 -7134 NM_148977 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 525-5 chr4 91329050 91329447 + 2.33333 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 948054 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 760-5 chr20 37202292 37202860 + 2.33333 NA intron (NM_001324305, intron 5 of 17) intron (NM_001324305, intron 5 of 17) -23028 NM_152503 140699 Hs.349125 NM_152503 ENSG00000101353 MROH8 C20orf131|C20orf132 maestro heat like repeat family member 8 protein-coding 358.333-7 chr6 158220024 158220268 + 2.33333 NA Intergenic Intergenic 51799 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 186.5-25 chr4 67567085 67567223 + 2.33333 NA intron (NM_012108, intron 1 of 8) intron (NM_012108, intron 1 of 8) 8427 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 269.167-9 chr2 55017233 55017433 + 2.33333 NA intron (NM_153828, intron 1 of 6) intron (NM_153828, intron 1 of 6) -7061 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 631.166 chr19 44657186 44657662 + 2.33333 NA intron (NM_001135770, intron 4 of 5) L2a|LINE|L2 -3692 NR_039756 100616355 NR_039756 ENSG00000283673 MIR4531 - microRNA 4531 ncRNA 628.834 chr8 85257833 85258365 + 2.33333 NA intron (NM_198584, intron 2 of 6) AluJo|SINE|Alu 12641 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 215.333-40 chr6 116267481 116267595 + 2.33333 NA intron (NM_001322937, intron 2 of 6) Tigger3b|DNA|TcMar-Tigger -12548 NM_001080976 29940 Hs.458358 NM_013352 ENSG00000111817 DSE DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 345.667-4 chr20 18587635 18588016 + 2.33333 NA promoter-TSS (NM_001318043) promoter-TSS (NM_001318043) -229 NM_001318043 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 452.167-3 chr18 35005952 35006221 + 2.33333 NA intron (NM_001143827, intron 2 of 7) intron (NM_001143827, intron 2 of 7) 27718 NM_001143827 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 818.333 chr4 35151803 35152622 + 2.33333 NA Intergenic Intergenic -882465 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 587.334 chr11 12052176 12052681 + 2.33333 NA intron (NR_135109, intron 1 of 1) MLT1D|LTR|ERVL-MaLR 21553 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 437.666-4 chr12 18861241 18861695 + 2.33333 NA Intergenic L1ME3Cz|LINE|L1 123349 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 402.999 chr1 178294041 178294220 + 2.33333 NA intron (NM_170692, intron 2 of 17) intron (NM_170692, intron 2 of 17) -47321 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 689.167-2 chr9 120936283 120937119 + 2.33333 NA Intergenic Intergenic -7528 NM_001190945 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding 391.833-3 chr18 9474953 9475435 + 2.33333 NA promoter-TSS (NM_006788) promoter-TSS (NM_006788) -319 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 350.5-6 chr19 56377554 56377834 + 2.33333 NA non-coding (NR_003127, exon 7 of 7) non-coding (NR_003127, exon 7 of 7) -9311 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 818.833 chr1 224513660 224514529 + 2.33333 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 79245 NM_001322304 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 642.501 chr11 72414117 72414661 + 2.33333 NA intron (NM_001258394, intron 2 of 17) intron (NM_001258394, intron 2 of 17) 20142 NM_001258393 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 291.666 chr10 73593069 73593294 + 2.33333 NA intron (NM_001350995, intron 1 of 21) AluJb|SINE|Alu -1839 NM_001320437 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 543.332 chr4 145557457 145558080 + 2.33333 NA intron (NM_005900, intron 6 of 6) intron (NM_005900, intron 6 of 6) -40574 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 488.5-4 chr2 205813749 205814112 + 2.33333 NA Intergenic Intergenic 131429 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 1434.33 chr1 147242366 147243539 + 2.33333 NA promoter-TSS (NM_001348452) promoter-TSS (NM_001348452) -190 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 508.833-2 chr10 105237174 105237513 + 2.33333 NA intron (NM_014978, intron 20 of 26) MIRb|SINE|MIR -571127 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 558.833 chrX 151151495 151151864 + 2.33333 NA Intergenic Intergenic -16543 NR_036256 100422930 NR_036256 ENSG00000265789 MIR4330 - microRNA 4330 ncRNA 556-2 chr20 43514166 43514641 + 2.33333 NA promoter-TSS (NM_015478) promoter-TSS (NM_015478) -38 NM_015478 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 262.667-6 chr1 163709824 163710078 + 2.33333 NA Intergenic L1MA4|LINE|L1 -286760 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 889.333 chr19 30666080 30666744 + 2.33333 NA intron (NM_001352260, intron 5 of 5) (TCCC)n|Simple_repeat|Simple_repeat 294028 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 370.167 chr12 92570596 92570811 + 2.33333 NA Intergenic Intergenic 104024 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 1308.34 chr12 26845140 26846359 + 2.33333 NA Intergenic Intergenic -12555 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 487.167-2 chr2 115641410 115641688 + 2.33333 NA intron (NM_001321912, intron 6 of 25) L2a|LINE|L2 297734 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 342.833-17 chr5 178075910 178076495 + 2.33333 NA Intergenic Intergenic -37330 NM_015111 23138 Hs.101761 NM_015111 ENSG00000145911 N4BP3 LZTS4 NEDD4 binding protein 3 protein-coding 319.833-3 chr1 163035950 163036295 + 2.33333 NA Intergenic Intergenic -32484 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 280.333-21 chr4 114925023 114925350 + 2.33333 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 188434 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 400.333-2 chr17 48885629 48885822 + 2.33333 NA intron (NR_135674, intron 2 of 3) intron (NR_135674, intron 2 of 3) -7062 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5MC1 ATP5A|ATP5G|ATP5G1 ATP synthase membrane subunit c locus 1 protein-coding 943.333 chr2 28956594 28957755 + 2.33333 NA Intergenic Intergenic -24124 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 553.334 chr14 81269363 81269867 + 2.33333 NA intron (NM_001366850, intron 7 of 7) intron (NM_001366850, intron 7 of 7) -48225 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 949 chr17 8057294 8058234 + 2.33333 NA Intergenic Intergenic 18705 NM_001039131 247 Hs.111256 NM_001141 ENSG00000179593 ALOX15B 15-LOX-2 arachidonate 15-lipoxygenase type B protein-coding 622.333 chrX 86133206 86133980 + 2.33333 NA Intergenic Intergenic -14858 NM_053281 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 384.833-2 chr11 123707780 123708217 + 2.33333 NA Intergenic Intergenic 22987 NM_001301819 7753 Hs.112556 NM_003455 ENSG00000166261 ZNF202 ZKSCAN10|ZSCAN42 zinc finger protein 202 protein-coding 309.666 chr1 197437845 197438059 + 2.33333 NA intron (NM_001193640, intron 7 of 9) intron (NM_001193640, intron 7 of 9) 169700 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 431.833-2 chr5 43624886 43625189 + 2.33333 NA intron (NM_012343, intron 6 of 21) intron (NM_012343, intron 6 of 21) -21807 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 361.333-3 chr12 50273957 50274147 + 2.33333 NA intron (NM_016357, intron 1 of 10) intron (NM_016357, intron 1 of 10) 9468 NM_016357 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 611.666-2 chr18 32271614 32272110 + 2.33333 NA intron (NM_001242409, intron 4 of 5) intron (NM_001242409, intron 4 of 5) 81823 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 319.5-14 chr4 164137738 164138003 + 2.33333 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 59841 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 385.999 chr1 64625658 64625966 + 2.33333 NA intron (NM_020925, intron 4 of 26) intron (NM_020925, intron 4 of 26) 45965 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 235.666-2 chr13 26083447 26083799 + 2.33333 NA Intergenic MER68C|LTR|ERVL -24101 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 312.5-5 chr11 103249023 103249280 + 2.33333 NA intron (NM_001377, intron 65 of 88) intron (NM_001377, intron 65 of 88) 139725 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 546.333 chr11 117807451 117808070 + 2.33333 NA intron (NM_001367905, intron 1 of 6) intron (NM_001367905, intron 1 of 6) 9754 NM_001367905 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 841.666-2 chr19 16111422 16111975 + 2.33333 NA promoter-TSS (NM_005370) promoter-TSS (NM_005370) -191 NM_005370 4218 Hs.642874 NM_005370 ENSG00000167461 RAB8A MEL|RAB8 RAB8A, member RAS oncogene family protein-coding 426-8 chr17 65942148 65942390 + 2.33333 NA intron (NM_001353129, intron 18 of 26) MER1B|DNA|hAT-Charlie -115726 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 621.166-2 chr7 103447049 103447443 + 2.33333 NA intron (NR_110141, intron 2 of 3) intron (NR_110141, intron 2 of 3) -1039 NM_206885 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 399-6 chr17 58145256 58145516 + 2.33333 NA Intergenic L1MB7|LINE|L1 -9768 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 408.666-2 chr17 58014767 58015173 + 2.33333 NA Intergenic HSMAR2|DNA|TcMar-Mariner -7624 NR_034041 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 344.167-9 chr5 41641857 41642066 + 2.33333 NA Intergenic Intergenic -131360 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 235.5-20 chr6 26017769 26017937 + 2.33333 NA promoter-TSS (NM_005325) promoter-TSS (NM_005325) -41 NM_005325 3024 Hs.150206 NM_005325 ENSG00000124610 HIST1H1A H1.1|H1A|H1F1|HIST1 histone cluster 1 H1 family member a protein-coding 191-7 chr10 25596547 25596691 + 2.33333 NA intron (NM_020752, intron 9 of 10) intron (NM_020752, intron 9 of 10) -55093 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 551.5 chr2 12931343 12931656 + 2.33333 NA Intergenic L2b|LINE|L2 75514 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 163.833-24 chr2 107043878 107044041 + 2.33333 NA Intergenic L1MA6|LINE|L1 -156850 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 458 chr1 205711012 205711504 + 2.33333 NA Intergenic Intergenic -30749 NM_033102 85414 Hs.278695 NM_033102 ENSG00000158715 SLC45A3 IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST solute carrier family 45 member 3 protein-coding 387-4 chr13 37835834 37836296 + 2.33333 NA intron (NM_003306, intron 1 of 10) THE1B|LTR|ERVL-MaLR 34360 NM_001135957 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 588.999-2 chr8 66438727 66439409 + 2.33333 NA intron (NM_144650, intron 1 of 13) CpG 6564 NM_144650 137872 Hs.720023 NM_144650 ENSG00000147576 ADHFE1 ADH8|HMFT2263|HOT alcohol dehydrogenase iron containing 1 protein-coding 462.666-2 chr15 70544233 70544593 + 2.33333 NA Intergenic L1MB7|LINE|L1 -38485 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 390.833-3 chrX 10190360 10190845 + 2.33333 NA intron (NM_001830, intron 4 of 12) intron (NM_001830, intron 4 of 12) 33627 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 324.667-8 chr14 50182810 50183072 + 2.33333 NA intron (NM_006939, intron 5 of 22) intron (NM_006939, intron 5 of 22) 48637 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 228.666-2 chr10 31633615 31633748 + 2.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -233926 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 712.667 chr7 93551222 93551721 + 2.33333 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 8339 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 715.666-2 chr5 125980376 125981027 + 2.33333 NA Intergenic Charlie1b|DNA|hAT-Charlie -198876 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 601.666 chr19 55467905 55468225 + 2.33333 NA Intergenic Intergenic -6423 NM_001136201 79763 Hs.467306 NM_024710 ENSG00000063241 ISOC2 - isochorismatase domain containing 2 protein-coding 411.166-8 chr6 44221383 44221778 + 2.33333 NA intron (NM_001304466, intron 1 of 12) intron (NM_001304466, intron 1 of 12) -1924 NM_001304463 2030 Hs.25450 NM_004955 ENSG00000112759 SLC29A1 ENT1 solute carrier family 29 member 1 (Augustine blood group) protein-coding 437-6 chr3 49839428 49839799 + 2.33333 NA intron (NM_005879, intron 10 of 14) intron (NM_005879, intron 10 of 14) 16951 NM_005879 10293 Hs.517972 NM_005879 ENSG00000183763 TRAIP RNF206|SCKL9|TRIP TRAF interacting protein protein-coding 369-10 chr3 105757856 105758211 + 2.33333 NA intron (NR_135806, intron 4 of 20) intron (NR_135806, intron 4 of 20) 109558 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 454.833-2 chr18 5600255 5600823 + 2.33333 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) 28452 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 189.833-13 chr4 63677430 63677598 + 2.33333 NA Intergenic Intergenic 731936 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 272-20 chr18 59928953 59929182 + 2.33333 NA Intergenic L1M5|LINE|L1 29071 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 586-4 chrX 129944062 129944474 + 2.33333 NA Intergenic AluY|SINE|Alu 38104 NM_006649 10813 Hs.458598 NM_006649 ENSG00000156697 UTP14A NYCO16|SDCCAG16|Utp14|dJ537K23.3 UTP14A small subunit processome component protein-coding 591.167-3 chr6 166951089 166951620 + 2.33333 NA intron (NM_003730, intron 2 of 8) LTR13|LTR|ERVK 5196 NM_003730 8635 Hs.529989 NM_003730 ENSG00000026297 RNASET2 RNASE6PL|bA514O12.3 ribonuclease T2 protein-coding 612.333-2 chr7 31488724 31489313 + 2.33333 NA Intergenic L2a|LINE|L2 -25053 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 423.5-5 chr18 13736441 13736913 + 2.33333 NA intron (NM_003799, intron 4 of 11) intron (NM_003799, intron 4 of 11) 10004 NM_003799 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 367.333-7 chr4 119263038 119263214 + 2.33333 NA intron (NM_001371399, intron 10 of 16) intron (NM_001371399, intron 10 of 16) 37519 NM_001001701 401152 Hs.173705 NM_001001701 ENSG00000164096 C4orf3 ALN|HCVFTP1 chromosome 4 open reading frame 3 protein-coding 498.333-2 chr3 116278043 116278441 + 2.33333 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -81782 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 303.666 chr10 44158874 44159074 + 2.33333 NA Intergenic L1MDa|LINE|L1 -133776 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 543.166-3 chrX 64894590 64894921 + 2.33333 NA Intergenic Intergenic 81695 NM_018684 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 437.333-3 chr5 149485881 149486329 + 2.33333 NA Intergenic Intergenic 55459 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 668.001 chr1 202009469 202009978 + 2.33333 NA promoter-TSS (NM_004433) promoter-TSS (NM_004433) 630 NR_146472 102723465 Hs.661033 NR_146472 ELF3-AS1 SCAT7 ELF3 antisense RNA 1 ncRNA 383.833-7 chr2 162123076 162123389 + 2.33333 NA intron (NR_110255, intron 1 of 3) intron (NR_110255, intron 1 of 3) 8791 NR_110255 101929532 Hs.639883 NR_110255 ENSG00000236841 LOC101929532 - uncharacterized LOC101929532 ncRNA 548.834 chr1 25618858 25619475 + 2.33333 NA intron (NM_020379, intron 1 of 11) intron (NM_020379, intron 1 of 11) 1698 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 527.333-4 chr7 7762976 7763313 + 2.33333 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -44537 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 1223.33-2 chr6 52399671 52400579 + 2.33333 NA intron (NM_133367, intron 1 of 1) intron (NM_133367, intron 1 of 1) -20217 NM_018100 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 373.833-6 chr8 121660619 121660875 + 2.33333 NA Intergenic Intergenic -19307 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 404.167-2 chr1 186722586 186722935 + 2.33333 NA Intergenic Intergenic 42106 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 453.666-4 chr7 18610585 18610818 + 2.33333 NA intron (NM_001321893, intron 7 of 11) intron (NM_001321893, intron 7 of 11) 101431 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 1208.67 chr9 137028898 137029720 + 2.33333 NA promoter-TSS (NM_212533) promoter-TSS (NM_212533) -387 NM_212533 20 Hs.421202 NM_001606 ENSG00000107331 ABCA2 ABC2 ATP binding cassette subfamily A member 2 protein-coding 596.167-2 chr11 83249955 83250420 + 2.33333 NA intron (NM_001300972, intron 11 of 11) intron (NM_001300972, intron 11 of 11) 36220 NM_001286119 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 182-23 chr2 169319077 169319190 + 2.33333 NA intron (NM_004525, intron 2 of 78) intron (NM_004525, intron 2 of 78) 43401 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 355.666-2 chr9 102510198 102510388 + 2.33333 NA Intergenic L1MA10|LINE|L1 -9344 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 405.666-2 chr2 185629042 185629236 + 2.33333 NA Intergenic MER61A|LTR|ERV1 109580 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 711.5 chr3 52446703 52447737 + 2.33333 NA Intergenic Intergenic -2117 NM_020163 56920 Hs.59729 NM_020163 ENSG00000010319 SEMA3G sem2 semaphorin 3G protein-coding 1194.33 chr12 26524272 26525318 + 2.33333 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 308399 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 829-2 chr12 89017086 89017824 + 2.33333 NA intron (NR_038385, intron 1 of 2) intron (NR_038385, intron 1 of 2) 2237 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 455.333-6 chr3 10945450 10946075 + 2.33333 NA Intergenic Intergenic -46972 NM_001348252 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 387-11 chr2 57595664 57595865 + 2.33333 NA Intergenic L1MA6|LINE|L1 -311887 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 464.999-2 chr4 39828260 39828460 + 2.33333 NA intron (NM_001100399, intron 32 of 32) intron (NM_001100399, intron 32 of 32) 130224 NM_001312648 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 377.5-4 chr19 38001740 38001997 + 2.33333 NA intron (NM_015073, intron 1 of 21) L1MA9|LINE|L1 94660 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 254.166-2 chr14 61021714 61021895 + 2.33333 NA intron (NR_033344, intron 5 of 16) intron (NR_033344, intron 5 of 16) -40114 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 333.166-3 chr2 64148543 64148903 + 2.33333 NA Intergenic L1MEc|LINE|L1 -4303 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 481.667-5 chr9 82709691 82710107 + 2.33333 NA Intergenic Intergenic 353243 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 631.833-3 chrX 128518722 128519185 + 2.33333 NA Intergenic L1PA16|LINE|L1 -466550 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 614.666 chr2 222052789 222053242 + 2.33333 NA Intergenic Intergenic -245132 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 345 chr1 77257926 77258210 + 2.33333 NA Intergenic L1MA5|LINE|L1 -23951 NM_174858 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 363.833-4 chr19 57681641 57681942 + 2.33333 NA promoter-TSS (NM_138347) promoter-TSS (NM_138347) -186 NM_138347 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 325.5-17 chr4 84804192 84804456 + 2.33333 NA intron (NM_014991, intron 15 of 67) intron (NM_014991, intron 15 of 67) -161292 NR_152773 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 734.832 chr5 308468 309042 + 2.33333 NA intron (NM_001267558, intron 5 of 6) intron (NM_001267558, intron 5 of 6) 4579 NM_001242412 57491 Hs.50823 NM_020731 ENSG00000286169 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 332.833-11 chr4 73121934 73122374 + 2.33333 NA intron (NM_032217, intron 18 of 33) intron (NM_032217, intron 18 of 33) -52395 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 211.666-3 chr14 62114394 62114566 + 2.33333 NA Intergenic Intergenic -2877 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 1290.17 chr8 52407527 52408583 + 2.33333 NA intron (NM_001352880, intron 2 of 2) intron (NM_001352880, intron 2 of 2) 1701 NM_001352883 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 923-2 chr5 109478913 109479863 + 2.33333 NA Intergenic Intergenic -69414 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 494.167-5 chr8 38118255 38118654 + 2.33333 NA intron (NM_004674, intron 8 of 15) intron (NM_004674, intron 8 of 15) 12661 NM_001261832 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like, histone lysine methyltransferase complex subunit protein-coding 369.333-9 chr8 88082962 88083292 + 2.33333 NA intron (NM_005941, intron 6 of 9) L1MC5a|LINE|L1 -209112 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 409.501 chr14 46062968 46063317 + 2.33333 NA Intergenic L2a|LINE|L2 -1017 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 424.666-5 chr5 127412099 127412316 + 2.33333 NA intron (NM_001308121, intron 9 of 13) intron (NM_001308121, intron 9 of 13) -105433 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 305.5-5 chr10 106571755 106571996 + 2.33333 NA Intergenic L2c|LINE|L2 431710 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 554.833-2 chr6 65962388 65962762 + 2.33333 NA Intergenic Intergenic 174696 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 481.5 chr14 60905819 60906264 + 2.33333 NA intron (NM_001177963, intron 6 of 6) L2a|LINE|L2 75038 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 400.5-3 chr14 59655167 59655430 + 2.33333 NA intron (NM_021136, intron 3 of 8) L1MB7|LINE|L1 -8278 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 386-4 chr2 50671592 50671873 + 2.33333 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 24530 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 442.833 chr1 46303273 46303679 + 2.33333 NA promoter-TSS (NM_006369) promoter-TSS (NM_006369) -110 NM_006369 10489 Hs.144941 NM_006369 ENSG00000132128 LRRC41 MUF1|PP7759 leucine rich repeat containing 41 protein-coding 281.666-4 chr6 45374391 45374541 + 2.33333 NA intron (NM_181356, intron 1 of 12) MIRb|SINE|MIR 3052 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 743.5 chr8 119451605 119452398 + 2.33333 NA Intergenic Intergenic 35555 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 301.333-14 chr20 19578751 19578917 + 2.33333 NA intron (NM_020689, intron 3 of 16) MLT1K|LTR|ERVL-MaLR -294238 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 241.166-3 chr19 53637885 53638200 + 2.33333 NA Intergenic Intergenic 5986 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 510.667 chr1 54081611 54082092 + 2.33333 NA intron (NM_153035, intron 3 of 4) intron (NM_153035, intron 3 of 4) 27772 NR_039942 100616315 NR_039942 ENSG00000283749 MIR4781 mir-4781 microRNA 4781 ncRNA 378-20 chr7 25848520 25848905 + 2.33333 NA Intergenic Intergenic -58593 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 286.333-9 chr4 66688862 66689180 + 2.33333 NA Intergenic Intergenic 412197 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 438.333 chr1 3491160 3491636 + 2.33333 NA intron (NM_001409, intron 35 of 36) intron (NM_001409, intron 35 of 36) 36733 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 418.166-2 chr4 38320412 38320712 + 2.33333 NA Intergenic Intergenic -46352 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 574.167-2 chr14 73644602 73645754 + 2.33333 NA intron (NM_031427, intron 1 of 7) intron (NM_031427, intron 1 of 7) 192 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 463.667-2 chr1 88061612 88061961 + 2.33333 NA Intergenic Intergenic -622358 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 387.166-2 chr2 27761648 27761830 + 2.33333 NA Intergenic Intergenic -9978 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 232-34 chr4 175514055 175514216 + 2.33333 NA Intergenic MSTA|LTR|ERVL-MaLR 273541 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 287-17 chr2 38721017 38721233 + 2.33333 NA intron (NM_138801, intron 4 of 6) intron (NM_138801, intron 4 of 6) 30236 NM_001031684 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 372.999 chr13 107709698 107709967 + 2.33333 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 125626 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 680.666-2 chr2 134988779 134989141 + 2.33333 NA intron (NM_001321177, intron 6 of 9) intron (NM_001321177, intron 6 of 9) 34689 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 388.333-2 chr1 240511973 240512150 + 2.33333 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 100094 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 596.001 chr2 69913159 69913772 + 2.33333 NA Intergenic Intergenic -1576 NM_001202514 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 834.499 chr21 30505120 30506164 + 2.33333 NA Intergenic Intergenic -3501 NM_181611 337972 Hs.553694 NM_181611 ENSG00000186977 KRTAP19-5 KAP19.5 keratin associated protein 19-5 protein-coding 814.5 chr3 187714199 187714874 + 2.33333 NA intron (NR_034062, intron 1 of 2) intron (NR_034062, intron 1 of 2) -11979 NM_001004312 344892 Hs.567872 NM_001004312 ENSG00000198471 RTP2 Z3CXXC2 receptor transporter protein 2 protein-coding 772.666 chr4 119041735 119042574 + 2.33333 NA 3' UTR (NM_001128933, exon 4 of 4) 3' UTR (NM_001128933, exon 4 of 4) -93630 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 306.333-12 chrX 114344728 114345030 + 2.33333 NA Intergenic Intergenic -239199 NM_000868 3358 Hs.149037 NM_000868 ENSG00000147246 HTR2C 5-HT1C|5-HT2C|5-HTR2C|5HTR2C|HTR1C 5-hydroxytryptamine receptor 2C protein-coding 461.666-2 chr22 24747937 24748223 + 2.33333 NA intron (NM_001008496, intron 12 of 20) L1MA2|LINE|L1 -16421 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 559.667-3 chr5 52922289 52922648 + 2.33333 NA intron (NM_181501, intron 17 of 28) intron (NM_181501, intron 17 of 28) -66884 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 582.5-2 chr12 55996782 55997261 + 2.33333 NA promoter-TSS (NM_000456) promoter-TSS (NM_000456) -255 NM_000456 6821 Hs.558403 NM_000456 ENSG00000139531 SUOX - sulfite oxidase protein-coding 217.333-17 chr2 33608304 33608406 + 2.33333 NA Intergenic Intergenic -8993 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 310.166-2 chr2 151661857 151662071 + 2.33333 NA intron (NM_001271208, intron 46 of 182) intron (NM_001271208, intron 46 of 182) 72512 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 329.5-17 chr5 50959520 50959707 + 2.33333 NA Intergenic Intergenic 10574 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 428-10 chr7 106041067 106041510 + 2.33333 NA Intergenic Intergenic 71024 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 389.167-4 chr4 114071151 114071419 + 2.33333 NA Intergenic L1PA17|LINE|L1 -91638 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 408.333 chr12 17794407 17794631 + 2.33333 NA Intergenic Intergenic 121220 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 1065.5 chr6 105077547 105078317 + 2.33333 NA intron (NM_001004317, intron 3 of 3) intron (NM_001004317, intron 3 of 3) 58414 NM_147147 11149 Hs.221660 NM_007073 ENSG00000112276 BVES CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1 blood vessel epicardial substance protein-coding 782.499 chr11 123261371 123262276 + 2.33333 NA Intergenic Intergenic -66575 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 246.167 chr1 43822164 43822303 + 2.33333 NA intron (NM_001270460, intron 4 of 10) intron (NM_001270460, intron 4 of 10) -16389 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 213-23 chr2 72826087 72826316 + 2.33333 NA promoter-TSS (NM_015189) promoter-TSS (NM_015189) -168 NM_001321734 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 754-3 chr17 72556651 72557378 + 2.33333 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 35790 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 488.334-5 chr7 80917715 80917971 + 2.33333 NA intron (NM_001350120, intron 1 of 17) intron (NM_001350120, intron 1 of 17) 1208 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 613.334 chr3 197306168 197306575 + 2.33333 NA Intergenic L1MB8|LINE|L1 -7050 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 687.167-2 chr3 172461484 172462060 + 2.33333 NA Intergenic L2b|LINE|L2 -13316 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 436.5-5 chr22 30289359 30289781 + 2.33333 NA promoter-TSS (NM_001037666) promoter-TSS (NM_001037666) 57 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 CASTOR1 GATSL3 cytosolic arginine sensor for mTORC1 subunit 1 protein-coding 618.666-2 chr18 63847059 63847381 + 2.33333 NA Intergenic Intergenic -40485 NM_001143818 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 426-13 chr4 84577286 84577589 + 2.33333 NA Intergenic MER104|DNA|TcMar-Tc2 -5690 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 718.667 chr17 16521433 16521870 + 2.33333 NA Intergenic Intergenic -29458 NM_001113567 388341 Hs.25425 NM_207387 ENSG00000181350 LRRC75A C17orf76|FAM211A leucine rich repeat containing 75A protein-coding 412.833-2 chr11 37870196 37870546 + 2.33333 NA Intergenic Intergenic -68230 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 763.999 chr6 153512041 153512539 + 2.33333 NA Intergenic Intergenic -381008 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 229.666 chr1 172154197 172154312 + 2.33333 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -9419 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 584.5 chr6 37693403 37693919 + 2.33333 NA intron (NM_153487, intron 1 of 16) intron (NM_153487, intron 1 of 16) 4222 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 470.166-2 chr7 30026448 30026876 + 2.33333 NA promoter-TSS (NR_046479) promoter-TSS (NR_046479) 40 NR_046479 55033 Hs.390838 NM_017946 ENSG00000106080 FKBP14 EDSKMH|EDSKSCL2|FKBP22|IPBP12 FKBP prolyl isomerase 14 protein-coding 581.334 chr16 11405543 11406081 + 2.33333 NA intron (NM_001370704, intron 47 of 66) L2a|LINE|L2 -59448 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 604.333-3 chr12 55940024 55940467 + 2.33333 NA intron (NM_201554, intron 10 of 23) intron (NM_201554, intron 10 of 23) 4237 NM_001351037 1606 Hs.524488 NM_001345 ENSG00000065357 DGKA DAGK|DAGK1|DGK-alpha diacylglycerol kinase alpha protein-coding 375.666-3 chr3 5637670 5637862 + 2.33333 NA Intergenic LTR88b|LTR|Gypsy? -387511 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 511.833 chr19 55339413 55339844 + 2.33333 NA promoter-TSS (NM_032701) promoter-TSS (NM_032701) -248 NM_032701 84787 Hs.590982 NM_032701 ENSG00000133247 KMT5C SUV420H2|Suv4-20h2 lysine methyltransferase 5C protein-coding 164-38 chr2 216151762 216151833 + 2.33333 NA intron (NM_021141, intron 14 of 20) intron (NM_021141, intron 14 of 20) 42449 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 166.833-30 chr7 91772581 91772667 + 2.33333 NA Intergenic Intergenic 108078 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 529.333-3 chr15 23877727 23878435 + 2.33333 NA Intergenic Intergenic -97066 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 866.333 chr1 37487323 37487914 + 2.33333 NA Intergenic Intergenic 7388 NR_106790 102465438 NR_106790 ENSG00000283724 MIR6732 hsa-mir-6732 microRNA 6732 ncRNA 318.333 chr1 53154065 53154357 + 2.33333 NA Intergenic Intergenic -11573 NM_006671 6512 Hs.104637 NM_006671 ENSG00000162383 SLC1A7 AAAT|EAAT5 solute carrier family 1 member 7 protein-coding 394-12 chr5 140996541 140996856 + 2.33333 NA intron (NM_018911, intron 3 of 3) intron (NM_018911, intron 3 of 3) 29931 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 294.666-6 chr6 34660398 34660645 + 2.33333 NA intron (NM_022758, intron 1 of 3) intron (NM_022758, intron 1 of 3) -35633 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 196.333-6 chr11 82606796 82606928 + 2.33333 NA Intergenic L2c|LINE|L2 127002 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 378.666-6 chr8 79384294 79384561 + 2.33333 NA Intergenic Intergenic 52239 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 968 chr17 31525459 31526423 + 2.33333 NA intron (NM_001303542, intron 8 of 12) intron (NM_001303542, intron 8 of 12) -8942 NR_039877 100616248 NR_039877 ENSG00000284424 MIR4724 mir-4724 microRNA 4724 ncRNA 310.5-18 chr8 63944424 63944577 + 2.33333 NA intron (NR_125826, intron 4 of 4) L1MEc|LINE|L1 175070 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 582.666-2 chrX 26653329 26653703 + 2.33333 NA Intergenic HUERS-P3b-int|LTR|ERV1 95179 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 284.166-3 chr13 22986973 22987148 + 2.33333 NA Intergenic LTR26E|LTR|ERV1 -70691 NR_138043 100996930 Hs.380803 NR_138043 LINC00621 - long intergenic non-protein coding RNA 621 ncRNA 491.666-2 chr3 23325285 23325697 + 2.33333 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 122164 NM_001370228 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 657.5-3 chr6 100664072 100664702 + 2.33333 NA intron (NM_006828, intron 14 of 41) intron (NM_006828, intron 14 of 41) -200712 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 651.833-2 chr19 45693279 45693764 + 2.33333 NA exon (NM_001163377, exon 2 of 6) exon (NM_001163377, exon 2 of 6) 855 NM_001163377 54814 Hs.631556 NM_017659 ENSG00000011478 QPCTL gQC glutaminyl-peptide cyclotransferase like protein-coding 573.333-2 chr4 116056243 116057027 + 2.33333 NA Intergenic Intergenic -243090 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 338.667-14 chr8 22227678 22228014 + 2.33333 NA intron (NM_001363311, intron 3 of 6) intron (NM_001363311, intron 3 of 6) 4253 NM_014759 9796 Hs.334688 NM_014759 ENSG00000168490 PHYHIP DYRK1AP3|PAHX-AP|PAHXAP1 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding 579.333-2 chr11 46351837 46352499 + 2.33333 NA intron (NM_001199266, intron 1 of 30) intron (NM_001199266, intron 1 of 30) 4705 NM_001199268 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding 614 chr5 181159218 181159720 + 2.33333 NA Intergenic Intergenic 4526 NM_206880 285659 Hs.553681 NM_206880 ENSG00000182613 OR2V2 OR2V3|OST713 olfactory receptor family 2 subfamily V member 2 protein-coding 357.333-17 chr9 93109085 93109321 + 2.33333 NA intron (NR_160513, intron 3 of 6) intron (NR_160513, intron 3 of 6) 12986 NM_001318010 84270 Hs.434213 NM_032310 ENSG00000165233 CARD19 BinCARD|C9orf89 caspase recruitment domain family member 19 protein-coding 321.5-15 chr3 1365215 1365584 + 2.33333 NA intron (NM_001289080, intron 12 of 22) L1MC5|LINE|L1 272375 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 1126-4 chr4 111631428 111632273 + 2.33333 NA Intergenic Intergenic -513604 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 349.167-7 chr21 16067738 16068098 + 2.33333 NA Intergenic Intergenic -2570 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 295-10 chr18 75448152 75448367 + 2.33333 NA Intergenic L1MEg1|LINE|L1 -20556 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 369.499-3 chr5 131812691 131812888 + 2.33333 NA intron (NM_001303622, intron 12 of 12) ERVL-B4-int|LTR|ERVL -15772 NM_001346113 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 380.333-4 chr12 13591518 13591804 + 2.33333 NA intron (NM_000834, intron 9 of 12) MIRb|SINE|MIR -214916 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 286.666-9 chr3 155684725 155684906 + 2.33333 NA intron (NM_001349252, intron 2 of 24) L3b|LINE|CR1 -8472 NM_001130960 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 265.833-15 chr5 73643067 73643400 + 2.33333 NA intron (NM_001177693, intron 1 of 35) MER97b|DNA|hAT-Tip100 17075 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 328.833-9 chr3 96486188 96486365 + 2.33333 NA Intergenic Intergenic 126312 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 483.666-3 chrX 114611018 114611471 + 2.33333 NA intron (NM_001256760, intron 1 of 6) intron (NM_001256760, intron 1 of 6) -19553 NR_002993 677816 Hs.693123 NR_002993 ENSG00000208839 SNORA35 HBI-36|SNORA35A small nucleolar RNA, H/ACA box 35 snoRNA 192-28 chr4 180209641 180209780 + 2.33333 NA Intergenic Intergenic 949439 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 531.167 chr2 152715654 152716317 + 2.33333 NA intron (NM_001365604, intron 2 of 25) intron (NM_001365604, intron 2 of 25) 1476 NM_001365599 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 595.333 chr2 155223738 155224238 + 2.33333 NA Intergenic Intergenic 525293 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 482.166 chr2 214079263 214079478 + 2.33333 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) 321303 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 519.5-4 chr8 18696239 18696611 + 2.33333 NA intron (NM_015310, intron 9 of 15) MIRb|SINE|MIR 112442 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 220.166-5 chr7 124153403 124153641 + 2.33333 NA Intergenic Intergenic -120455 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 297-4 chr12 4946137 4946289 + 2.33333 NA Intergenic MSTB|LTR|ERVL-MaLR 36308 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 329.667-8 chr5 45694221 45694485 + 2.33333 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 2027 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 424-4 chr2 96117234 96117441 + 2.33333 NA promoter-TSS (NM_000682) promoter-TSS (NM_000682) -766 NM_000682 151 Hs.247686 NM_000682 ENSG00000274286 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR adrenoceptor alpha 2B protein-coding 466.333-4 chr3 156450173 156450430 + 2.33333 NA intron (NM_172159, intron 2 of 13) Charlie8|DNA|hAT-Charlie -3365 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 957.832 chr20 50085257 50086191 + 2.33333 NA intron (NM_022442, intron 2 of 3) intron (NM_022442, intron 2 of 3) 27426 NM_001032288 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 321.166-4 chr4 144964414 144964615 + 2.33333 NA Intergenic Intergenic 132868 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 390.333-11 chr9 9419196 9419426 + 2.33333 NA intron (NM_002839, intron 8 of 45) Mam_R4|LINE|Dong-R4 -380081 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 227.667-8 chr11 108184898 108185081 + 2.33333 NA intron (NM_001321307, intron 10 of 17) intron (NM_001321307, intron 10 of 17) 37649 NM_002519 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 164.167-45 chr6 46849005 46849139 + 2.33333 NA Intergenic Intergenic -54399 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 414.999-2 chr18 73312734 73313062 + 2.33333 NA Intergenic MER53|DNA|hAT -12043 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 264.5-25 chr8 30051166 30051478 + 2.33333 NA Intergenic Intergenic 31742 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 495-3 chr2 200415009 200415364 + 2.33333 NA intron (NM_001100423, intron 4 of 12) MamRep434|DNA|TcMar-Tigger 94882 NM_001321548 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 636.333 chr4 52025830 52026244 + 2.33333 NA intron (NM_000232, intron 5 of 5) L2a|LINE|L2 -5674 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 174.333-3 chr1 244834516 244834655 + 2.33333 NA promoter-TSS (NM_001312872) promoter-TSS (NM_001312872) -721 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 363.666-5 chr2 119633626 119633905 + 2.33333 NA intron (NR_073132, intron 20 of 24) L1MB1|LINE|L1 -45402 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 501.667 chr1 93023326 93023624 + 2.33333 NA Intergenic Intergenic -55760 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 188-35 chr3 84519377 84519500 + 2.33333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 350137 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 607.166-2 chr7 129342860 129343474 + 2.33333 NA intron (NM_001130720, intron 1 of 16) intron (NM_001130720, intron 1 of 16) -25213 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 259-25 chr3 31550654 31550854 + 2.33333 NA intron (NM_178862, intron 1 of 15) intron (NM_178862, intron 1 of 15) 17829 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 710.834 chr1 12314054 12314746 + 2.33333 NA intron (NM_015378, intron 30 of 69) intron (NM_015378, intron 30 of 69) 84370 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 365.833-7 chr20 62794209 62794421 + 2.33333 NA Intergenic (GGCGGA)n|Simple_repeat|Simple_repeat -2158 NM_018270 55257 Hs.443260 NM_018270 ENSG00000101189 MRGBP C20orf20|Eaf7|MRG15BP|URCC4 MRG domain binding protein protein-coding 318.667-3 chr14 44602978 44603257 + 2.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR 95708 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 384.5-5 chr19 45469124 45469365 + 2.33333 NA intron (NM_001114171, intron 1 of 2) CpG 1248 NM_001114171 2354 Hs.590958 NM_006732 ENSG00000125740 FOSB AP-1|G0S3|GOS3|GOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding 306.833 chr10 93749463 93749667 + 2.33333 NA Intergenic Intergenic -8244 NM_001308275 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 426.5-4 chr17 53473857 53474132 + 2.33333 NA Intergenic MIRb|SINE|MIR -348933 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 369.833-9 chr8 130614925 130615193 + 2.33333 NA Intergenic Intergenic -171385 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 456.333-3 chr8 126918660 126918931 + 2.33333 NA Intergenic L1ME1|LINE|L1 -94359 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 295.333-22 chr8 122532384 122532555 + 2.33333 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 36175 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 428.167 chr3 58830013 58830310 + 2.33333 NA intron (NR_110820, intron 1 of 2) intron (NR_110820, intron 1 of 2) 5690 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 468.833-3 chr22 40092990 40093345 + 2.33333 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) 48350 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 412.999 chr8 75395535 75395725 + 2.33333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -12019 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 758 chr3 120094515 120095196 + 2.33333 NA promoter-TSS (NM_001146156) promoter-TSS (NM_001146156) -408 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 240-10 chr12 14884064 14884175 + 2.33333 NA intron (NM_000900, intron 2 of 3) intron (NM_000900, intron 2 of 3) 1735 NM_001190839 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 1083.33-2 chr11 28529547 28530426 + 2.33333 NA Intergenic Intergenic -52438 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 404.833-3 chr13 29924034 29924506 + 2.33333 NA intron (NR_047501, intron 1 of 1) intron (NR_047501, intron 1 of 1) 2381 NR_047501 100861573 Hs.585619 NR_047501 ENSG00000224405 LINC00572 - long intergenic non-protein coding RNA 572 ncRNA 610.666-2 chr2 183248654 183249141 + 2.33333 NA Intergenic Intergenic 124454 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 399-10 chr4 118977524 118977806 + 2.33333 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 88811 NM_001128933 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 409.666-3 chr15 45118282 45118724 + 2.33333 NA TTS (NM_001276266) TTS (NM_001276266) 4177 NM_207581 405753 Hs.497987 NM_207581 ENSG00000140274 DUOXA2 SIMNIPHOM|TDH5 dual oxidase maturation factor 2 protein-coding 192.333-13 chr12 114263536 114263664 + 2.33333 NA Intergenic Intergenic -21830 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 714.001 chr2 203815063 203815922 + 2.33333 NA Intergenic Intergenic -52279 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 337.167-3 chr11 117198335 117198513 + 2.33333 NA promoter-TSS (NM_003186) promoter-TSS (NM_003186) -870 NM_001001522 6876 Hs.410977 NM_003186 ENSG00000149591 TAGLN SM22|SM22-alpha|SMCC|TAGLN1|WS3-10 transgelin protein-coding 321 chr10 29634257 29634447 + 2.33333 NA intron (NM_001323599, intron 3 of 38) A-rich|Low_complexity|Low_complexity 619 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 266.666-7 chr2 109469063 109469214 + 2.33333 NA intron (NM_001099289, intron 8 of 9) intron (NM_001099289, intron 8 of 9) 144529 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 531.499 chr12 51992674 51993246 + 2.33333 NA intron (NM_004302, intron 8 of 8) intron (NM_004302, intron 8 of 8) -13986 NM_181711 160622 Hs.407202 NM_181711 ENSG00000161835 GRASP TAMALIN general receptor for phosphoinositides 1 associated scaffold protein protein-coding 482.999 chr8 123743331 123743730 + 2.33333 NA Intergenic Intergenic -6137 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 540.666 chr11 9458331 9458628 + 2.33333 NA Intergenic Intergenic 2219 NR_036539 644656 Hs.597846 NR_036539 ENSG00000268403 LOC644656 - uncharacterized LOC644656 ncRNA 372.333-9 chr4 119082460 119082665 + 2.33333 NA Intergenic A-rich|Low_complexity|Low_complexity -53222 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 412.5-3 chr4 121505915 121506266 + 2.33333 NA Intergenic HAL1b|LINE|L1 -125072 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 956.333 chr2 13193461 13194301 + 2.33333 NA Intergenic MIRb|SINE|MIR -186868 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 345.167-7 chr4 11720468 11720695 + 2.33333 NA Intergenic Intergenic 48887 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 380.166-2 chr7 77627747 77628039 + 2.33333 NA intron (NM_001131009, intron 12 of 16) intron (NM_001131009, intron 12 of 16) 68372 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 346.833-2 chr12 28550953 28551249 + 2.33333 NA TTS (NM_001352078) TTS (NM_001352078) -360363 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 546.833-2 chr13 26482352 26482979 + 2.33333 NA Intergenic Intergenic -75018 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 605.166-3 chr8 110832248 110832852 + 2.33333 NA Intergenic HUERS-P3-int|LTR|ERV1 194883 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 293.833-10 chr5 132471708 132471904 + 2.33333 NA intron (NR_161242, intron 3 of 3) intron (NR_161242, intron 3 of 3) 18967 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 998.833 chr10 122565561 122566772 + 2.33333 NA intron (NM_004406, intron 2 of 39) intron (NM_004406, intron 2 of 39) 5412 NM_001320644 1755 Hs.279611 NM_004406 ENSG00000187908 DMBT1 GP340|SAG|SALSA|muclin deleted in malignant brain tumors 1 protein-coding 249.333-15 chr17 50087460 50087674 + 2.33333 NA intron (NM_002204, intron 23 of 25) intron (NM_002204, intron 23 of 25) -7170 NM_001199898 5164 Hs.256667 NM_002611 ENSG00000005882 PDK2 PDHK2|PDKII pyruvate dehydrogenase kinase 2 protein-coding 482 chr1 237125033 237125280 + 2.33333 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 82972 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 808 chr1 16244334 16245193 + 2.33333 NA Intergenic MIRb|SINE|MIR -7580 NM_030907 79363 Hs.546430 NM_030907 ENSG00000132881 CPLANE2 C1orf89|RSG1 ciliogenesis and planar polarity effector 2 protein-coding 247-17 chr17 63946742 63946984 + 2.33333 NA intron (NM_000334, intron 18 of 23) intron (NM_000334, intron 18 of 23) -14532 NM_001329050 974 Hs.89575 NM_000626 ENSG00000007312 CD79B AGM6|B29|IGB CD79b molecule protein-coding 474.667-5 chr3 111035094 111035385 + 2.33333 NA Intergenic L1MA4A|LINE|L1 34720 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 281-16 chr21 39788432 39788690 + 2.33333 NA intron (NM_001080444, intron 6 of 8) intron (NM_001080444, intron 6 of 8) 43154 NM_001080444 150084 Hs.422120 NM_001080444 ENSG00000183067 IGSF5 GSF5|JAM4 immunoglobulin superfamily member 5 protein-coding 526.333 chr2 153492784 153493434 + 2.33333 NA Intergenic L1M5|LINE|L1 -14347 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 292.667-7 chr17 75456436 75456640 + 2.33333 NA promoter-TSS (NM_001351202) promoter-TSS (NM_001351202) -97 NM_001351202 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 IDDCDF|KIAA0195 transmembrane protein 94 protein-coding 587.167 chr10 27759424 27760163 + 2.33333 NA intron (NR_121652, intron 1 of 1) intron (NR_121652, intron 1 of 1) -13974 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 496.667-2 chr17 79401260 79401725 + 2.33333 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 114656 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 604.168 chr10 59584906 59585493 + 2.33333 NA Intergenic MER58A|DNA|hAT-Charlie 124692 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 325-12 chr5 112338693 112338875 + 2.33333 NA intron (NM_001347887, intron 1 of 23) MER58A|DNA|hAT-Charlie 80493 NM_001347887 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 457.333-2 chr3 38520270 38520499 + 2.33333 NA intron (NR_134938, intron 6 of 7) intron (NR_134938, intron 6 of 7) 24044 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 789.167 chr1 165144210 165145232 + 2.33333 NA Intergenic MER3|DNA|hAT-Charlie 211520 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 334.5-2 chr1 187086144 187086416 + 2.33333 NA Intergenic Intergenic -6562 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 494-4 chr4 121671331 121671667 + 2.33333 NA intron (NM_001154, intron 10 of 12) intron (NM_001154, intron 10 of 12) 25481 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 415.334-7 chr2 159553642 159553906 + 2.33333 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -61520 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 850-2 chr14 78566499 78567191 + 2.33333 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 163126 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 225.833-4 chr10 510816 511233 + 2.33333 NA intron (NM_014974, intron 1 of 36) intron (NM_014974, intron 1 of 36) -117540 NR_147612 101930421 Hs.654707 NR_147612 ENSG00000225140 LOC101930421 - uncharacterized LOC101930421 ncRNA 518.501 chr8 82951243 82951604 + 2.33333 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 39319 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 468.833-5 chr4 39761457 39761798 + 2.33333 NA intron (NM_005339, intron 4 of 6) intron (NM_005339, intron 4 of 6) 63491 NM_001312648 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 369-13 chr7 85628724 85629025 + 2.33333 NA Intergenic MER45R|DNA|hAT-Tip100 207752 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 485.833-3 chr5 133869387 133869808 + 2.33333 NA Intergenic Intergenic -44080 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 388.666 chr2 39996658 39996937 + 2.33333 NA intron (NR_038441, intron 2 of 4) MIRb|SINE|MIR 79163 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 237.333-28 chr4 41527164 41527287 + 2.33333 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -10932 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 227.5-18 chr2 29748219 29748378 + 2.33333 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 173288 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 469.499-2 chr20 56414361 56414653 + 2.33333 NA intron (NM_001164116, intron 2 of 6) FLAM_A|SINE|Alu 2247 NM_001164114 57091 Hs.473144 NM_020356 ENSG00000087589 CASS4 C20orf32|CAS4|HEFL|HEPL Cas scaffold protein family member 4 protein-coding 318.666-3 chr17 21021603 21021835 + 2.33333 NA intron (NM_015276, intron 2 of 12) intron (NM_015276, intron 2 of 12) 21292 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 508.333-4 chr8 130134342 130134783 + 2.33333 NA intron (NM_001362925, intron 15 of 29) MIRb|SINE|MIR -49794 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 448.999 chr1 151515317 151515546 + 2.33333 NA intron (NM_020770, intron 1 of 20) MIRb|SINE|MIR 4044 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 751.665 chr1 23497013 23497758 + 2.33333 NA Intergenic Intergenic -13206 NM_001143778 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 525-4 chr3 109732693 109733000 + 2.33333 NA Intergenic Intergenic 130018 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 539.666-2 chr1 207007249 207007653 + 2.33333 NA Intergenic Intergenic 25305 NM_001083924 79098 Hs.32417 NM_023938 ENSG00000182795 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 405.334 chr1 36575989 36576278 + 2.33333 NA Intergenic Intergenic -92819 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 678.333 chr1 53959019 53959828 + 2.33333 NA intron (NM_001256409, intron 4 of 8) intron (NM_001256409, intron 4 of 8) 13073 NM_052940 115353 Hs.40094 NM_052940 ENSG00000116212 LRRC42 dJ167A19.4 leucine rich repeat containing 42 protein-coding 290.667-13 chr20 6940049 6940328 + 2.33333 NA Intergenic MER91B|DNA|hAT-Tip100 172502 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 417.666-3 chr5 23550231 23550498 + 2.33333 NA Intergenic MER39B|LTR|ERV1 42709 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 309.833-8 chr9 26725473 26725656 + 2.33333 NA Intergenic Intergenic 167238 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 287.001-2 chr5 35744240 35744464 + 2.33333 NA intron (NM_024867, intron 23 of 36) intron (NM_024867, intron 23 of 36) -112539 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 341.667-13 chr4 169791705 169792124 + 2.33333 NA Intergenic Intergenic -33970 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 487.666-3 chr2 232761133 232761447 + 2.33333 NA intron (NM_015575, intron 9 of 30) intron (NM_015575, intron 9 of 30) 15275 NM_002242 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 382.666-2 chr15 33233891 33234337 + 2.33333 NA Intergenic Intergenic 13441 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 330.333-6 chr4 33554214 33554396 + 2.33333 NA Intergenic Intergenic 485588 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 309.666-2 chr15 40564905 40565147 + 2.33333 NA promoter-TSS (NM_052849) promoter-TSS (NM_052849) 16 NM_001080792 90416 Hs.654661 NM_052849 ENSG00000128891 CCDC32 C15orf57 coiled-coil domain containing 32 protein-coding 423.833-3 chr11 118172043 118172224 + 2.33333 NA intron (NM_004588, intron 1 of 3) intron (NM_004588, intron 1 of 3) 4506 NM_004588 6327 Hs.129783 NM_004588 ENSG00000149575 SCN2B ATFB14 sodium voltage-gated channel beta subunit 2 protein-coding 477 chr1 157963534 157964070 + 2.33333 NA Intergenic Intergenic -29471 NM_001286349 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL1 KIRREL|NEPH1 kirre like nephrin family adhesion molecule 1 protein-coding 477.333-3 chr11 109946105 109946610 + 2.33333 NA Intergenic Intergenic -147035 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 525.333 chr4 47123536 47123813 + 2.33333 NA intron (NM_000812, intron 3 of 8) (TATATTA)n|Simple_repeat|Simple_repeat 92107 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 440.333-2 chr14 20530791 20531119 + 2.33333 NA Intergenic A-rich|Low_complexity|Low_complexity 20483 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 938.333-2 chr6 57020902 57021665 + 2.33333 NA intron (NM_152731, intron 6 of 6) intron (NM_152731, intron 6 of 6) -25249 NM_001286274 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 422.166-2 chr9 71119913 71120271 + 2.33333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 1529 NM_001366152 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 501.668-3 chr8 9797744 9798131 + 2.33333 NA Intergenic SATR2|Satellite|Satellite 56265 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 397.5-3 chr10 77401467 77401803 + 2.33333 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 50763 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 1101.83-2 chr2 72605681 72606395 + 2.33333 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 219995 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 353.667 chr1 149939251 149939501 + 2.33333 NA 3' UTR (NM_020205, exon 12 of 12) 3' UTR (NM_020205, exon 12 of 12) -2497 NM_001145862 10903 Hs.425144 NM_006697 ENSG00000014914 MTMR11 CRA myotubularin related protein 11 protein-coding 237.334-14 chr6 156760442 156760562 + 2.33333 NA Intergenic L1MEi|LINE|L1 -17353 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 568.5 chr12 54824607 54824913 + 2.33333 NA Intergenic L1MDb|LINE|L1 -29756 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 286.333-14 chr6 122912175 122912393 + 2.33333 NA Intergenic L1M3de|LINE|L1 -83951 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 566.501-3 chr2 74836411 74836890 + 2.33333 NA intron (NM_000189, intron 1 of 17) intron (NM_000189, intron 1 of 17) 3995 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 253.5-34 chr8 82350991 82351183 + 2.33333 NA Intergenic Intergenic -508801 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 613.834 chr4 94304175 94305067 + 2.33333 NA intron (NM_014485, intron 4 of 5) intron (NM_014485, intron 4 of 5) 38215 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 234-4 chr1 156193811 156194117 + 2.33333 NA promoter-TSS (NM_001286184) promoter-TSS (NM_001286184) 32 NR_104412 9673 Hs.532375 NM_014655 ENSG00000160785 SLC25A44 - solute carrier family 25 member 44 protein-coding 679.999 chr2 72993165 72993635 + 2.33333 NA intron (NR_138476, intron 9 of 14) intron (NR_138476, intron 9 of 14) 65772 NM_001330407 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 316.5-13 chr19 28864251 28864436 + 2.33333 NA Intergenic Intergenic -100788 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 550.333 chr2 197113052 197113609 + 2.33333 NA intron (NM_153697, intron 8 of 9) intron (NM_153697, intron 8 of 9) -84661 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 767.833 chr10 68348396 68349083 + 2.33333 NA intron (NR_103476, intron 16 of 18) intron (NR_103476, intron 16 of 18) -15811 NM_022129 64081 Hs.198158 NM_022129 ENSG00000108187 PBLD HEL-S-306|MAWBP|MAWDBP phenazine biosynthesis like protein domain containing protein-coding 512-5 chr8 56203219 56203554 + 2.33333 NA intron (NM_002655, intron 1 of 4) intron (NM_002655, intron 1 of 4) 7887 NM_001114635 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 485-4 chr2 222971527 222971782 + 2.33333 NA Intergenic Intergenic -80276 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 452.666 chr10 101353826 101354068 + 2.33333 NA promoter-TSS (NM_033637) promoter-TSS (NM_033637) -86 NM_001256856 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 702.001 chr1 151443316 151444093 + 2.33333 NA intron (NM_001194938, intron 1 of 17) AluSp|SINE|Alu -1499 NM_207171 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 428.667-5 chr3 23739676 23740068 + 2.33333 NA Intergenic Intergenic -66083 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 395.5-6 chr5 79863886 79864123 + 2.33333 NA Intergenic Intergenic -72575 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 498.333 chr12 12327738 12328246 + 2.33333 NA 3' UTR (NM_018050, exon 4 of 4) 3' UTR (NM_018050, exon 4 of 4) 22250 NM_018050 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 389.667-2 chr13 27465653 27465904 + 2.33333 NA Intergenic Intergenic -15176 NM_152912 219402 Hs.534582 NM_152912 ENSG00000122033 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 463.667 chr1 48010397 48010721 + 2.33333 NA Intergenic AluJo|SINE|Alu -13174 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 775.833-3 chr7 12624072 12624660 + 2.33333 NA intron (NR_156701, intron 5 of 14) intron (NR_156701, intron 5 of 14) 34843 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 324.167-17 chr4 112214810 112215116 + 2.33333 NA Intergenic Intergenic -16824 NM_001128426 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 597.333-5 chr7 5494407 5495003 + 2.33333 NA intron (NM_024963, intron 3 of 4) intron (NM_024963, intron 3 of 4) 1212 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 283.167-10 chr2 170680606 170680912 + 2.33333 NA Intergenic Intergenic 33808 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 224.333-14 chr17 60252115 60252264 + 2.33333 NA intron (NM_032582, intron 11 of 33) intron (NM_032582, intron 11 of 33) -20544 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 668.166 chr5 140840587 140841209 + 2.33333 NA promoter-TSS (NM_031856) promoter-TSS (NM_031856) -289 NM_018911 56140 Hs.199343 NM_018911 ENSG00000204962 PCDHA8 PCDH-ALPHA8 protocadherin alpha 8 protein-coding 480.333-3 chr7 85150535 85151051 + 2.33333 NA Intergenic Intergenic -28862 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 512.833 chr10 97633807 97634396 + 2.33333 NA promoter-TSS (NM_001098831) promoter-TSS (NM_001098831) 55 NM_001098831 118812 Hs.217409 NM_178832 ENSG00000171160 MORN4 C10orf83|UTA|bA548K23.4|rtp MORN repeat containing 4 protein-coding 432.666 chr1 4193424 4193706 + 2.33333 NA Intergenic L1MC1|LINE|L1 -218486 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 738 chr2 209961163 209961990 + 2.33333 NA intron (NM_032504, intron 50 of 63) intron (NM_032504, intron 50 of 63) -40989 NM_001278289 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 338.333-2 chr16 12980392 12980708 + 2.33333 NA intron (NM_001145204, intron 2 of 4) L1MEh|LINE|L1 78952 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 321.834-3 chr18 5456450 5456876 + 2.33333 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 83893 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 416.667-5 chr17 35111490 35111701 + 2.33333 NA intron (NR_037711, intron 2 of 8) L1MC4|LINE|L1 8163 NM_001142571 5892 Hs.631757 NM_002878 ENSG00000185379 RAD51D BROVCA4|R51H3|RAD51L3|TRAD RAD51 paralog D protein-coding 574.167 chr10 32346043 32346623 + 2.33333 NA intron (NR_104159, intron 1 of 1) CpG 825 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 653.499 chr11 78414173 78414648 + 2.33333 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 3410 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 370-7 chr2 56316755 56317034 + 2.33333 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -131124 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 255.333-15 chr20 47271228 47271500 + 2.33333 NA intron (NM_001281774, intron 12 of 23) intron (NM_001281774, intron 12 of 23) -47138 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 614.666-3 chr7 42690885 42691657 + 2.33333 NA intron (NR_110833, intron 1 of 2) intron (NR_110833, intron 1 of 2) 15176 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 313.5-3 chr10 68922389 68922610 + 2.33333 NA intron (NM_024045, intron 8 of 14) L1M8|LINE|L1 21184 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 345.166-5 chr8 26140356 26140543 + 2.33333 NA Intergenic THE1C|LTR|ERVL-MaLR -95036 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 410.833-3 chr20 39221007 39221535 + 2.33333 NA intron (NR_027124, intron 1 of 3) LTR16E1|LTR|ERVL 3477 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 409.166-3 chr20 2743322 2743503 + 2.33333 NA intron (NM_001110514, intron 7 of 17) intron (NM_001110514, intron 7 of 17) 50534 NM_001110514 57593 Hs.471955 NM_020833 ENSG00000088881 EBF4 COE4|O/E-4 EBF family member 4 protein-coding 945.666 chr20 20568779 20569610 + 2.33333 NA intron (NM_020343, intron 23 of 39) intron (NM_020343, intron 23 of 39) 143450 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 169-29 chr2 45141967 45142121 + 2.33333 NA Intergenic Intergenic 112897 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 219.333-14 chr15 60607577 60607684 + 2.33333 NA intron (NR_120342, intron 5 of 5) intron (NR_120342, intron 5 of 5) -15104 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 446-7 chr5 41329813 41330235 + 2.33333 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -68555 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 315.666 chr10 33228888 33229129 + 2.33333 NA intron (NM_001244973, intron 6 of 16) intron (NM_001244973, intron 6 of 16) 105659 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 411.333-9 chr6 83884301 83884602 + 2.33333 NA intron (NM_016230, intron 2 of 15) L1MEf|LINE|L1 24762 NM_016230 51167 Hs.5741 NM_016230 ENSG00000065615 CYB5R4 NCB5OR|cb5/cb5R|dJ676J13.1 cytochrome b5 reductase 4 protein-coding 519.833 chr10 116809480 116809945 + 2.33333 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) 17856 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 484.833-4 chr3 84206956 84207352 + 2.33333 NA Intergenic L1MC1|LINE|L1 662421 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 460.333-6 chr3 85567310 85567609 + 2.33333 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 62400 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 492.333-2 chr8 124420374 124420654 + 2.33333 NA Intergenic Intergenic -30306 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 471.166 chr14 45534643 45534928 + 2.33333 NA Intergenic L1PA10|LINE|L1 180817 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 985.333 chr1 113140266 113140917 + 2.33333 NA Intergenic Intergenic 65662 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 395.333-5 chr10 121421758 121421961 + 2.33333 NA Intergenic MamTip2|DNA|hAT-Tip100 109455 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 490.001-2 chr10 103592904 103593151 + 2.33333 NA TTS (NM_004210) TTS (NM_004210) -75585 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 377.666-3 chr11 76514034 76514261 + 2.33333 NA intron (NM_001300942, intron 11 of 21) MIRb|SINE|MIR 69122 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 537.333-2 chr18 38801758 38802063 + 2.33333 NA Intergenic MIRc|SINE|MIR 820265 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 457.834-5 chr6 77925988 77926664 + 2.33333 NA 3' UTR (NM_001322247, exon 5 of 5) 3' UTR (NM_001322247, exon 5 of 5) 273287 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 260-10 chr15 67105443 67105627 + 2.33333 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -20181 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 316.333-4 chr11 100681294 100681555 + 2.33333 NA Intergenic Intergenic -5864 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 609.334-3 chr22 45553598 45554001 + 2.33333 NA intron (NM_006486, intron 14 of 16) intron (NM_006486, intron 14 of 16) 50916 NM_006485 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 536.333-3 chr5 134302980 134303328 + 2.33333 NA intron (NM_001113575, intron 11 of 12) AluSx|SINE|Alu 63920 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 522.166-3 chr2 16144774 16145062 + 2.33333 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat 94491 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 305.5-4 chr10 14838110 14838353 + 2.33333 NA promoter-TSS (NM_016299) promoter-TSS (NM_016299) 71 NM_001278205 51182 Hs.534169 NM_016299 ENSG00000187522 HSPA14 HSP70-4|HSP70L1 heat shock protein family A (Hsp70) member 14 protein-coding 252.5-19 chr6 66514436 66514603 + 2.33333 NA Intergenic Intergenic 726640 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 748.334 chr19 2236332 2236783 + 2.33333 NA promoter-TSS (NM_001300836) promoter-TSS (NM_001300836) -228 NM_001300836 55111 Hs.501353 NM_018049 ENSG00000104886 PLEKHJ1 GNRPX pleckstrin homology domain containing J1 protein-coding 169.5-6 chr10 23686896 23686999 + 2.33333 NA Intergenic Intergenic -7780 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 663.667-2 chr22 28441607 28442882 + 2.33333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -17625 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 314.999 chr2 100292042 100292339 + 2.33333 NA intron (NM_198461, intron 9 of 11) intron (NM_198461, intron 9 of 11) 30543 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 531-4 chr4 87159482 87159977 + 2.33333 NA TTS (NR_120447) TTS (NR_120447) 60539 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 499.999 chr8 23084094 23084366 + 2.33333 NA promoter-TSS (NR_046173) promoter-TSS (NR_046173) -125 NR_046173 254896 Hs.735240 NR_046173 ENSG00000284948 LOC254896 - uncharacterized LOC254896 ncRNA 739.167 chr2 209331240 209331970 + 2.33333 NA Intergenic Intergenic -92442 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 303.333-18 chr7 91784378 91784729 + 2.33333 NA Intergenic Intergenic 96149 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 403.5-7 chr4 67637909 67638353 + 2.33333 NA intron (NM_018227, intron 19 of 32) intron (NM_018227, intron 19 of 32) 63024 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 163.166 chr1 36516499 36516587 + 2.33333 NA Intergenic Intergenic -33229 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 520.167-2 chr20 63309464 63309971 + 2.33333 NA intron (NM_020882, intron 9 of 35) intron (NM_020882, intron 9 of 35) 16531 NM_020882 57642 Hs.271285 NM_020882 ENSG00000101203 COL20A1 - collagen type XX alpha 1 chain protein-coding 441.334-6 chr9 82795384 82795681 + 2.33333 NA Intergenic L1MB8|LINE|L1 267610 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 419.834 chr10 77756392 77756754 + 2.33333 NA Intergenic L1M3f|LINE|L1 -118765 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 504.999-2 chr5 34723476 34723843 + 2.33333 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 36100 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 544.5 chr1 109546200 109546563 + 2.33333 NA TTS (NM_031936) TTS (NM_031936) -2234 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 467.166-3 chr7 112481608 112481831 + 2.33333 NA intron (NM_182597, intron 1 of 3) intron (NM_182597, intron 1 of 3) 728 NM_182597 286006 Hs.396189 NM_182597 ENSG00000181016 LSMEM1 C7orf53 leucine rich single-pass membrane protein 1 protein-coding 228.666-13 chr7 93871581 93871741 + 2.33333 NA Intergenic L1MEd|LINE|L1 19092 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 394-7 chr2 197813393 197814028 + 2.33333 NA intron (NM_006226, intron 1 of 5) MIR|SINE|MIR 9117 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 384.5-2 chr11 46889344 46889754 + 2.33333 NA intron (NM_002334, intron 15 of 37) intron (NM_002334, intron 15 of 37) 29001 NM_002334 4038 Hs.4930 NM_002334 ENSG00000134569 LRP4 CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2 LDL receptor related protein 4 protein-coding 398.166-2 chr13 102342878 102343203 + 2.33333 NA intron (NM_001321941, intron 1 of 5) intron (NM_001321941, intron 1 of 5) -24490 NR_125912 100874081 Hs.569296 NR_125912 ENSG00000234445 FGF14-AS1 - FGF14 antisense RNA 1 ncRNA 362.667-2 chr14 52880555 52880714 + 2.33333 NA intron (NM_006832, intron 6 of 14) AluSg|SINE|Alu 70416 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 511.333-2 chr1 35774885 35775310 + 2.33333 NA Intergenic AluSx|SINE|Alu -5119 NM_001330490 63967 Hs.175613 NM_022111 ENSG00000092853 CLSPN - claspin protein-coding 561.166 chr12 14257684 14258019 + 2.33333 NA Intergenic Intergenic -107781 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 384.167-8 chr5 168269276 168269546 + 2.33333 NA Intergenic Intergenic -22234 NM_001161662 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 941.5-2 chr3 33440482 33441116 + 2.33333 NA promoter-TSS (NM_001128161) promoter-TSS (NM_001128161) -394 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 418.5-4 chr2 176126388 176126592 + 2.33333 NA Intergenic Intergenic -3215 NM_001199747 3234 Hs.301963 NM_019558 ENSG00000175879 HOXD8 HOX4|HOX4E|HOX5.4 homeobox D8 protein-coding 561.001 chr12 55143058 55143734 + 2.33333 NA Intergenic Intergenic 13627 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 475.333-7 chr3 116770727 116771089 + 2.33333 NA Intergenic Intergenic 61120 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 477-2 chr10 86333517 86333912 + 2.33333 NA intron (NM_017551, intron 2 of 15) Tigger2a|DNA|TcMar-Tigger 33081 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 712.333-3 chr6 73733038 73733660 + 2.33333 NA intron (NM_001159587, intron 4 of 32) intron (NM_001159587, intron 4 of 32) 37146 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 614.833 chr14 28927982 28928419 + 2.33333 NA Intergenic Cheshire|DNA|hAT-Charlie -142413 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 179.667-22 chr2 112944739 112944881 + 2.33333 NA Intergenic L1MA9|LINE|L1 29617 NM_173205 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 504.333-4 chr5 188259 188798 + 2.33333 NA 3' UTR (NM_052909, exon 20 of 20) 3' UTR (NM_052909, exon 20 of 20) -2967 NM_001080478 389257 Hs.103142 NM_001080478 ENSG00000185028 LRRC14B - leucine rich repeat containing 14B protein-coding 417.5-2 chr10 69413186 69413884 + 2.33333 NA intron (NM_001057, intron 2 of 4) intron (NM_001057, intron 2 of 4) 3383 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 439.834 chr1 43074548 43074929 + 2.33333 NA Intergenic ERVL-E-int|LTR|ERVL -73166 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 444.833-4 chr2 109458087 109458460 + 2.33333 NA intron (NM_001099289, intron 8 of 9) intron (NM_001099289, intron 8 of 9) -144648 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 219-11 chr17 30035560 30035751 + 2.33333 NA intron (NR_026738, intron 8 of 15) MER34|LTR|ERV1 -81152 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 513.334 chr2 74454257 74454650 + 2.33333 NA promoter-TSS (NR_037849) promoter-TSS (NR_037849) -570 NR_037849 100532735 Hs.410786 NR_037849 ENSG00000274049 INO80B-WBP1 - INO80B-WBP1 readthrough (NMD candidate) ncRNA 414.166-5 chr2 53404178 53404477 + 2.33333 NA Intergenic MER44B|DNA|TcMar-Tigger -363456 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 512-4 chr7 106894486 106894865 + 2.33333 NA intron (NM_001282426, intron 10 of 10) intron (NM_001282426, intron 10 of 10) 29196 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 853.5 chr11 81007144 81007639 + 2.33333 NA Intergenic MIRb|SINE|MIR -244588 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 450.666-8 chr4 99060066 99060328 + 2.33333 NA intron (NM_015143, intron 10 of 10) L1MB3|LINE|L1 28591 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 275.166 chr10 69123783 69124071 + 2.33333 NA promoter-TSS (NM_004896) promoter-TSS (NM_004896) -226 NM_001035260 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 832.5 chr20 36156391 36156896 + 2.33333 NA promoter-TSS (NR_147703) promoter-TSS (NR_147703) -883 NR_147703 100130373 Hs.570339 NR_147703 LOC100130373 - uncharacterized LOC100130373 ncRNA 956 chr1 186404208 186404866 + 2.33333 NA intron (NM_001164246, intron 10 of 12) intron (NM_001164246, intron 10 of 12) 3965 NM_022375 10896 Hs.679230 NM_022375 ENSG00000262180 OCLM TISR oculomedin protein-coding 273.333-17 chr6 67604983 67605200 + 2.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -450260 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 285.833-18 chr7 112829019 112829158 + 2.33333 NA intron (NM_152556, intron 4 of 4) L1ME1|LINE|L1 -38665 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 567.5-3 chr17 48585313 48585789 + 2.33333 NA Intergenic Intergenic -3172 NM_001330322 3213 Hs.654560 NM_002146 ENSG00000120093 HOXB3 HOX2|HOX2G|Hox-2.7 homeobox B3 protein-coding 275.5-13 chr19 47738444 47738716 + 2.33333 NA intron (NM_014601, intron 5 of 5) AluSx1|SINE|Alu -6966 NM_015710 29997 Hs.421907 NM_015710 ENSG00000105373 NOP53 GLTSCR2|PICT-1|PICT1 NOP53 ribosome biogenesis factor protein-coding 394.333 chr1 6034617 6034833 + 2.33333 NA promoter-TSS (NM_001199860) promoter-TSS (NM_001199860) 37 NM_001199860 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 385.167-6 chr12 109432672 109432966 + 2.33333 NA intron (NM_001101421, intron 18 of 30) intron (NM_001101421, intron 18 of 30) 44100 NM_001101421 283446 Hs.512008 NM_173597 ENSG00000174527 MYO1H - myosin IH protein-coding 612.833 chr7 68320364 68320755 + 2.33333 NA Intergenic Intergenic 300306 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 416-3 chr20 44083181 44083583 + 2.33333 NA Intergenic Intergenic 103806 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 979.834 chr15 33242043 33243077 + 2.33333 NA intron (NR_046005, intron 6 of 8) intron (NR_046005, intron 6 of 8) 4995 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 691.5-2 chr14 99415599 99415955 + 2.33333 NA intron (NM_199123, intron 6 of 8) intron (NM_199123, intron 6 of 8) 65082 NM_199123 84193 Hs.510407 NM_032233 ENSG00000183576 SETD3 C14orf154|hSETD3 SET domain containing 3, actin histidine methyltransferase protein-coding 268.333-14 chr22 20569093 20569387 + 2.33333 NA intron (NM_001293234, intron 8 of 16) intron (NM_001293234, intron 8 of 16) 61193 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 394-14 chr6 119979858 119980050 + 2.33333 NA Intergenic L2|LINE|L2 -35225 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 667.333 chr9 6667651 6668295 + 2.33333 NA Intergenic Intergenic -22281 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 553.667-3 chr7 9711904 9712616 + 2.33333 NA Intergenic MADE1|DNA|TcMar-Mariner 77990 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 595.667-3 chr15 94582131 94582563 + 2.33333 NA Intergenic Intergenic 226417 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 739.5-2 chr5 60688169 60688754 + 2.33333 NA intron (NM_001145208, intron 1 of 9) MIRb|SINE|MIR 11705 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 384.5-7 chr4 79917228 79917588 + 2.33333 NA intron (NM_001286781, intron 16 of 16) intron (NM_001286781, intron 16 of 16) 89937 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 453.666-3 chr6 41878126 41878605 + 2.33333 NA intron (NM_018561, intron 2 of 6) intron (NM_018561, intron 2 of 6) -6728 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 916.001 chr6 143427161 143427825 + 2.33333 NA 3' UTR (NM_182503, exon 6 of 6) 3' UTR (NM_182503, exon 6 of 6) 15184 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 523.999-4 chr4 30679546 30679954 + 2.33333 NA Intergenic Intergenic -40619 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 255.833-14 chr18 65725595 65725829 + 2.33333 NA Intergenic Intergenic -24540 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 791.833-3 chr5 112995599 112996451 + 2.33333 NA intron (NR_038352, intron 2 of 8) MLT1A|LTR|ERVL-MaLR 19227 NM_152624 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 539.333 chr1 211675349 211676107 + 2.33333 NA promoter-TSS (NM_001204183) promoter-TSS (NM_001204183) -34 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 690.333 chr12 21296554 21297337 + 2.33333 NA intron (NM_021094, intron 8 of 13) intron (NM_021094, intron 8 of 13) 37972 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 324.667-2 chr1 161119583 161119837 + 2.33333 NA intron (NM_005600, intron 4 of 6) intron (NM_005600, intron 4 of 6) 1592 NM_001185094 4817 Hs.146406 NM_005600 ENSG00000158793 NIT1 - nitrilase 1 protein-coding 449-3 chr4 41159367 41159622 + 2.33333 NA intron (NM_173075, intron 1 of 16) MIRb|SINE|MIR 55048 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 802.334 chr7 92590032 92590517 + 2.33333 NA promoter-TSS (NM_001288584) promoter-TSS (NM_001288584) 116 NM_152789 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 239-6 chr13 32195040 32195146 + 2.33333 NA intron (NM_023037, intron 29 of 60) intron (NM_023037, intron 29 of 60) 116861 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 445.333-3 chr12 16939626 16939917 + 2.33333 NA Intergenic L1PA15-16|LINE|L1 -48976 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 435 chr1 200421550 200421984 + 2.33333 NA Intergenic L2c|LINE|L2 -11731 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 668.166-2 chr7 136687733 136688201 + 2.33333 NA Intergenic Intergenic -180685 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 1055.67 chr15 26864556 26865392 + 2.33333 NA Intergenic Intergenic -2088 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 490.666-3 chr2 207784775 207785074 + 2.33333 NA Intergenic Intergenic -15018 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 504.167-3 chr8 94357336 94358107 + 2.33333 NA Intergenic Intergenic 79223 NM_001205263 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B protein-coding 329-10 chr5 111239769 111240151 + 2.33333 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 15576 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 555.332 chr17 62046184 62046480 + 2.33333 NA intron (NM_005121, intron 3 of 29) intron (NM_005121, intron 3 of 29) 18946 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 378-7 chr14 73316667 73317026 + 2.33333 NA intron (NM_001005743, intron 5 of 12) intron (NM_001005743, intron 5 of 12) -70845 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 463.833 chr14 58082682 58082973 + 2.33333 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 69386 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 246.833-11 chr5 19314838 19315162 + 2.33333 NA Intergenic MLT2B3|LTR|ERVL 571272 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 343.667-11 chr3 65255807 65256006 + 2.33333 NA Intergenic Intergenic -567906 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 606.999 chr1 12659104 12659553 + 2.33333 NA intron (NM_001013630, intron 2 of 3) L2b|LINE|L2 14781 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 325.5-6 chr12 80473059 80473317 + 2.33333 NA intron (NM_001145026, intron 8 of 44) intron (NM_001145026, intron 8 of 44) 28953 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 556.333-3 chr4 74116678 74117119 + 2.33333 NA Intergenic Intergenic -6375 NM_001351311 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 448-3 chr6 145591174 145591431 + 2.33333 NA Intergenic L1MCb|LINE|L1 95575 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 373.334-3 chr10 94202788 94203051 + 2.33333 NA intron (NM_001165979, intron 3 of 31) intron (NM_001165979, intron 3 of 31) 84151 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 405.833-5 chr22 43710516 43710822 + 2.33333 NA intron (NM_198856, intron 8 of 29) L1MC5|LINE|L1 101636 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 498.167-2 chr6 56595461 56596003 + 2.33333 NA intron (NM_001144770, intron 39 of 94) intron (NM_001144770, intron 39 of 94) 47157 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 544.999-4 chr7 95871262 95871651 + 2.33333 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 98950 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 646.833-2 chr19 49473715 49474425 + 2.33333 NA promoter-TSS (NM_001278637) promoter-TSS (NM_001278637) -145 NM_001278637 2323 Hs.428 NM_001459 ENSG00000090554 FLT3LG FL|FLG3L|FLT3L fms related tyrosine kinase 3 ligand protein-coding 343.167-6 chr8 86270353 86270651 + 2.33333 NA Intergenic Intergenic -40121 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 342.666-2 chr3 147853131 147853408 + 2.33333 NA Intergenic L1ME1|LINE|L1 -224890 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 360.167-3 chr2 219103935 219104353 + 2.33333 NA intron (NM_024782, intron 5 of 7) MER91C|DNA|hAT-Tip100 -43223 NM_002181 3549 Hs.654504 NM_002181 ENSG00000163501 IHH BDA1|HHG2 Indian hedgehog signaling molecule protein-coding 299-5 chr11 11782063 11782298 + 2.33333 NA TTS (NR_107037) TTS (NR_107037) 1042 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 360.501 chr10 18880894 18881195 + 2.33333 NA Intergenic AluSz|SINE|Alu -167757 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 342.166-3 chr2 72108693 72108869 + 2.33333 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat 39081 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 531.666 chr2 113162692 113162967 + 2.33333 NA Intergenic L1ME4b|LINE|L1 -11142 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 474.667-2 chr11 114302131 114302519 + 2.33333 NA intron (NM_006169, intron 2 of 2) L1MEf|LINE|L1 6512 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 843.833 chr10 125047701 125048603 + 2.33333 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -15282 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 292.666-6 chr4 38047107 38047370 + 2.33333 NA intron (NM_001253912, intron 10 of 20) intron (NM_001253912, intron 10 of 20) -62943 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 288.5-11 chr16 47281566 47281768 + 2.33333 NA intron (NM_030790, intron 10 of 17) L1MD|LINE|L1 137599 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 947.833-2 chr3 49094050 49094868 + 2.33333 NA promoter-TSS (NM_001320585) promoter-TSS (NM_001320585) -86 NM_001320585 54870 Hs.297389 NM_017730 ENSG00000198218 QRICH1 AB-DIP|VERBRAS glutamine rich 1 protein-coding 470.666 chr6 135668728 135669104 + 2.33333 NA intron (NR_152842, intron 3 of 5) intron (NR_152842, intron 3 of 5) 171115 NR_152843 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 675.333-3 chr3 25593827 25594323 + 2.33333 NA intron (NR_110892, intron 5 of 6) intron (NR_110892, intron 5 of 6) 70297 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 613.166 chr14 22190389 22191023 + 2.33333 NA Intergenic Intergenic 242047 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 483.167-3 chr2 72973387 72974069 + 2.33333 NA intron (NM_001330411, intron 11 of 14) intron (NM_001330411, intron 11 of 14) 56209 NM_004097 2016 Hs.516090 NM_004097 ENSG00000135638 EMX1 - empty spiracles homeobox 1 protein-coding 658.999 chr20 53162085 53162746 + 2.33333 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -22868 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 191-27 chr2 67340082 67340249 + 2.33333 NA Intergenic Intergenic -57168 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 1586.67 chr6 113908987 113910235 + 2.33333 NA intron (NR_027060, intron 1 of 3) intron (NR_027060, intron 1 of 3) 5224 NR_027060 285759 Hs.376634 NM_173673 ENSG00000175967 FLJ34503 - uncharacterized FLJ34503 ncRNA 393.333-2 chr13 91722121 91722728 + 2.33333 NA intron (NM_004466, intron 3 of 7) intron (NM_004466, intron 3 of 7) 323803 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 453.333-3 chr9 87689245 87689527 + 2.33333 NA intron (NM_004938, intron 21 of 25) L1MA4A|LINE|L1 -36733 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 383.667-6 chr2 238974361 238975027 + 2.33333 NA Intergenic L1MB8|LINE|L1 -48425 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 428-6 chr19 5029628 5029893 + 2.33333 NA intron (NM_001370094, intron 2 of 10) AluJb|SINE|Alu 60647 NM_015015 23030 Hs.654816 NM_015015 ENSG00000127663 KDM4B JMJD2B|TDRD14B lysine demethylase 4B protein-coding 307.167-10 chr17 7136821 7137007 + 2.33333 NA Intergenic Intergenic -22103 NM_080912 433 Hs.654440 NM_001181 ENSG00000161944 ASGR2 ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2 asialoglycoprotein receptor 2 protein-coding 356.666-9 chr9 37472505 37472899 + 2.33333 NA Intergenic Intergenic -7252 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 292.166-5 chr3 150227895 150228126 + 2.33333 NA Intergenic LTR41B|LTR|ERVL -10509 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 283.333-13 chr4 94881042 94881229 + 2.33333 NA intron (NM_001203, intron 2 of 12) L1MB3|LINE|L1 -115097 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 414-6 chr5 112924613 112924980 + 2.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -2569 NM_005669 7905 Hs.429608 NM_005669 ENSG00000129625 REEP5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e receptor accessory protein 5 protein-coding 634.001 chr11 133927329 133928032 + 2.33333 NA intron (NM_001277285, intron 12 of 19) intron (NM_001277285, intron 12 of 19) -25940 NR_024344 283174 Hs.504370 NM_001001873 ENSG00000280237 MIR4697HG LINC00947 MIR4697 host gene ncRNA 957.167 chr11 99015634 99016277 + 2.33333 NA Intergenic Intergenic -4994 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 693.333 chr17 48659607 48660221 + 2.33333 NA Intergenic MER21C|LTR|ERVL -27355 NR_029582 406972 NR_029582 ENSG00000210741 MIR196A1 MIRN196-1|MIRN196A1|mir-196a-1 microRNA 196a-1 ncRNA 189.833-18 chr7 22860766 22860884 + 2.33333 NA intron (NR_146320, intron 4 of 4) intron (NR_146320, intron 4 of 4) 4212 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 377.499-3 chr14 59452735 59452989 + 2.33333 NA Intergenic L1MC1|LINE|L1 12518 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 546.167-3 chr21 30194819 30195438 + 2.33333 NA Intergenic Intergenic 16655 NR_038855 266919 Hs.561028 NR_038855 ENSG00000227342 LINC00307 D21S2091E|NCRNA00307 long intergenic non-protein coding RNA 307 ncRNA 489 chr12 56041126 56041713 + 2.33333 NA promoter-TSS (NM_001029) promoter-TSS (NM_001029) -499 NM_001029 6231 Hs.447562 NM_001029 ENSG00000197728 RPS26 DBA10|S26|eS26 ribosomal protein S26 protein-coding 200.333-33 chr5 131114159 131114314 + 2.33333 NA Intergenic L1ME3G|LINE|L1 51020 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 408.666-4 chr5 147766805 147767019 + 2.33333 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 15816 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 338.666-4 chr4 86480683 86480890 + 2.33333 NA Intergenic MER39|LTR|ERV1 -27591 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 543.666-2 chr9 113446111 113446383 + 2.33333 NA intron (NM_144488, intron 1 of 25) intron (NM_144488, intron 1 of 25) 1517 NM_144488 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 438-5 chr4 38804629 38805126 + 2.33333 NA promoter-TSS (NM_003263) promoter-TSS (NM_003263) -86 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 263-2 chr1 231260632 231260826 + 2.33333 NA intron (NM_001316350, intron 2 of 14) intron (NM_001316350, intron 2 of 14) 19517 NM_014236 8443 Hs.498028 NM_014236 ENSG00000116906 GNPAT DAP-AT|DAPAT|DHAPAT|RCDP2 glyceronephosphate O-acyltransferase protein-coding 269.5-4 chr10 97411555 97411720 + 2.33333 NA Intergenic Intergenic -10267 NM_001145114 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 607.833-2 chr9 36597192 36597815 + 2.33333 NA intron (NM_001256691, intron 4 of 15) intron (NM_001256691, intron 4 of 15) 24608 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 712 chr13 27953533 27954100 + 2.33333 NA non-coding (NR_135254, exon 1 of 1) non-coding (NR_135254, exon 1 of 1) 290 NR_135254 100132234 Hs.197435 NR_135254 ENSG00000260704 LINC00543 - long intergenic non-protein coding RNA 543 ncRNA 1034.83 chr13 24670985 24671871 + 2.33333 NA Intergenic Intergenic -8980 NM_001676 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 779.999 chr16 19906972 19907834 + 2.33333 NA Intergenic AluJb|SINE|Alu -21769 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 1289.5 chr10 70902723 70903722 + 2.33333 NA Intergenic L2c|LINE|L2 -14657 NM_000281 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 427.5 chr10 63166572 63167020 + 2.33333 NA TTS (NM_001322252) TTS (NM_001322252) 33468 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 327.334-8 chr3 171965660 171965859 + 2.33333 NA Intergenic Charlie10|DNA|hAT-Charlie -65019 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 459.666-2 chr3 88702011 88702325 + 2.33333 NA Intergenic L1MC|LINE|L1 363712 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 623.667-3 chr6 144104667 144105446 + 2.33333 NA Intergenic Intergenic -9483 NM_031287 83443 Hs.110695 NM_031287 ENSG00000169976 SF3B5 SF3b10|Ysf3 splicing factor 3b subunit 5 protein-coding 620.833-2 chr12 49063738 49064353 + 2.33333 NA TTS (NM_001303126) TTS (NM_001303126) 5934 NM_144593 121268 Hs.159013 NM_144593 ENSG00000167550 RHEBL1 RHEBL1c RHEB like 1 protein-coding 362-11 chr16 27193475 27193723 + 2.33333 NA Intergenic Intergenic -9927 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 512.166 chr6 146087943 146088204 + 2.33333 NA intron (NM_001278065, intron 2 of 9) L1MD2|LINE|L1 58875 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 194.167-18 chr18 205127 205331 + 2.33333 NA intron (NM_001037334, intron 12 of 14) intron (NM_001037334, intron 12 of 14) 46672 NM_001037334 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 501.5-5 chr4 67910959 67911316 + 2.33333 NA 3' UTR (NM_182606, exon 10 of 10) 3' UTR (NM_182606, exon 10 of 10) -27135 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 315-21 chr9 109298019 109298280 + 2.33333 NA intron (NM_019114, intron 1 of 25) intron (NM_019114, intron 1 of 25) 22815 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 282-12 chr12 68223072 68223333 + 2.33333 NA intron (NM_018402, intron 3 of 4) intron (NM_018402, intron 3 of 4) 2608 NM_018402 55801 Hs.272350 NM_018402 ENSG00000111536 IL26 AK155|IL-26 interleukin 26 protein-coding 283-19 chr7 37625464 37625670 + 2.33333 NA Intergenic Intergenic -58199 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 382.5-4 chr15 57079009 57079319 + 2.33333 NA intron (NM_001322158, intron 5 of 20) MamRep434|DNA|TcMar-Tigger -140266 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 230.667-23 chr6 119129997 119130105 + 2.33333 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) 19142 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 483.999 chr12 31419025 31419498 + 2.33333 NA intron (NM_144973, intron 11 of 20) intron (NM_144973, intron 11 of 20) -49960 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 639-2 chr7 113421672 113422392 + 2.33333 NA Intergenic Intergenic -303450 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 500.334 chr1 11478536 11479111 + 2.33333 NA promoter-TSS (NM_020780) promoter-TSS (NM_020780) -332 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 365.667-12 chr9 76367479 76367719 + 2.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR 26827 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 593.166-3 chr7 123952370 123952690 + 2.33333 NA intron (NM_001174045, intron 3 of 5) intron (NM_001174045, intron 3 of 5) 26675 NM_001174045 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 473.334-4 chr5 164009408 164009872 + 2.33333 NA Intergenic Intergenic 457762 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 284.333-17 chr8 28931200 28931359 + 2.33333 NA intron (NM_001324393, intron 2 of 11) intron (NM_001324393, intron 2 of 11) 39965 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 491.999-2 chr12 2412476 2412905 + 2.33333 NA intron (NM_199460, intron 3 of 49).2 (AATA)n|Simple_repeat|Simple_repeat 142914 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 912.667 chr10 116681519 116682550 + 2.33333 NA intron (NM_001330164, intron 8 of 12) intron (NM_001330164, intron 8 of 12) -11752 NM_001350930 143379 Hs.121347 NM_144661 ENSG00000165863 C10orf82 - chromosome 10 open reading frame 82 protein-coding 480.833-4 chr2 81493024 81493326 + 2.33333 NA Intergenic Intergenic -26229 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 604.833-3 chr3 186259677 186260155 + 2.33333 NA intron (NM_001080744, intron 15 of 23) intron (NM_001080744, intron 15 of 23) 102318 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 588.667-3 chr6 74705575 74705952 + 2.33333 NA Intergenic MIRb|SINE|MIR 423019 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 188.333-42 chr8 123093944 123094059 + 2.33333 NA intron (NM_001363149, intron 5 of 21) intron (NM_001363149, intron 5 of 21) 20752 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 409.499-3 chr2 213236650 213237045 + 2.33333 NA Intergenic Intergenic 47362 NR_161186 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 565.333-2 chr9 129992201 129992532 + 2.33333 NA intron (NM_001363755, intron 2 of 15) intron (NM_001363755, intron 2 of 15) 50823 NM_001363755 23048 Hs.189409 NM_015033 ENSG00000187239 FNBP1 FBP17 formin binding protein 1 protein-coding 348-9 chr21 25349646 25349861 + 2.33333 NA Intergenic Charlie7|DNA|hAT-Charlie 81948 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 543.666 chr10 13777873 13778402 + 2.33333 NA intron (NM_001318336, intron 5 of 23) intron (NM_001318336, intron 5 of 23) -70570 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 266.667-13 chr20 40741506 40741746 + 2.33333 NA Intergenic L2b|LINE|L2 -27003 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 564.333 chr9 120366500 120366954 + 2.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -121677 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 590.334-2 chr8 49851898 49852402 + 2.33333 NA Intergenic L1PA16|LINE|L1 -57646 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 250.333-23 chrX 20932154 20932342 + 2.33333 NA Intergenic Intergenic -442170 NM_014927 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 408.5-4 chr4 17808336 17808861 + 2.33333 NA intron (NR_144301, intron 1 of 3) intron (NR_144301, intron 1 of 3) 2159 NM_001345882 54876 Hs.614787 NM_017741 ENSG00000163257 DCAF16 C4orf30 DDB1 and CUL4 associated factor 16 protein-coding 559.833-2 chr7 88837459 88838048 + 2.33333 NA intron (NM_181646, intron 1 of 3) Charlie1a|DNA|hAT-Charlie -42016 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 513-4 chr7 108460373 108460859 + 2.33333 NA Intergenic (A)n|Simple_repeat|Simple_repeat -3896 NM_001371124 499.335 chr9 38298476 38298892 + 2.33333 NA Intergenic Intergenic -94018 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 780 chr2 10657920 10658698 + 2.33333 NA intron (NR_048552, intron 9 of 19) L2a|LINE|L2 31666 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 218.5-18 chr14 68458599 68458863 + 2.33333 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 170056 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 648.499 chr18 74653129 74653860 + 2.33333 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 22531 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 805.167 chr8 131859679 131860185 + 2.33333 NA Intergenic Intergenic -44161 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 538.166-3 chr5 85342954 85343293 + 2.33333 NA Intergenic Intergenic -939321 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 378-16 chr4 67094799 67095055 + 2.33333 NA Intergenic Intergenic 327073 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 292.5-5 chr12 7860559 7860748 + 2.33333 NA intron (NM_001286237, intron 1 of 9) intron (NM_001286237, intron 1 of 9) 12262 NM_001286233 144195 Hs.655169 NM_153449 ENSG00000173262 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 member 14 protein-coding 444.666 chr12 45725295 45725942 + 2.33333 NA TTS (NR_028408) TTS (NR_028408) 2303 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 164.666 chr12 7216362 7216438 + 2.33333 NA intron (NM_001131026, intron 17 of 17) intron (NM_001131026, intron 17 of 17) 26038 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 624.333 chr1 229258186 229258601 + 2.33333 NA non-coding (NR_149312, exon 3 of 3) non-coding (NR_149312, exon 3 of 3) -12669 NR_073545 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 267-12 chr12 112815703 112815890 + 2.33333 NA intron (NM_001347955, intron 2 of 20) intron (NM_001347955, intron 2 of 20) 24048 NM_001347954 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 443.666-2 chr2 29427255 29427520 + 2.33333 NA intron (NM_004304, intron 4 of 28) L1M4b|LINE|L1 47990 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 450.499-2 chr5 30401714 30401919 + 2.33333 NA Intergenic Intergenic 521256 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 294.667-23 chr5 177457482 177457813 + 2.33333 NA intron (NM_080881, intron 14 of 14) intron (NM_080881, intron 14 of 14) 4779 NM_001364152 1627 Hs.130316 NM_004395 ENSG00000113758 DBN1 D0S117E drebrin 1 protein-coding 300.334-4 chr12 130765060 130765263 + 2.33333 NA Intergenic Intergenic -48856 NM_001351233 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 392.833-2 chr14 43705901 43706217 + 2.33333 NA Intergenic Intergenic 801224 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 364.666-8 chr8 25000061 25000364 + 2.33333 NA Intergenic CpG -43343 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 344-19 chr8 56682181 56682370 + 2.33333 NA Intergenic Intergenic -122452 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 400.333-7 chr7 24503117 24503364 + 2.33333 NA Intergenic Intergenic -70212 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 375.666-4 chr5 98998982 98999295 + 2.33333 NA intron (NR_151718, intron 2 of 3) Charlie4a|DNA|hAT-Charlie -69424 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 679-3 chr8 25444060 25444546 + 2.33333 NA exon (NM_017634, exon 3 of 12) exon (NM_017634, exon 3 of 12) 14130 NM_017634 54793 Hs.72071 NM_017634 ENSG00000104756 KCTD9 BTBD27 potassium channel tetramerization domain containing 9 protein-coding 1219-4 chr7 38747942 38748790 + 2.33333 NA intron (NM_014396, intron 22 of 28) intron (NM_014396, intron 22 of 28) -61277 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 348-13 chr7 91082487 91082654 + 2.33333 NA intron (NM_012395, intron 11 of 13) intron (NM_012395, intron 11 of 13) -181863 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 186.666-5 chr4 169650220 169650341 + 2.33333 NA intron (NM_173872, intron 2 of 13) intron (NM_173872, intron 2 of 13) -9782 NM_001243374 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 772.499 chr18 76875256 76875810 + 2.33333 NA exon (NM_007345, exon 6 of 31) exon (NM_007345, exon 6 of 31) 51373 NM_007345 7776 Hs.719137 NM_007345 ENSG00000130856 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding 677.833 chr16 88437156 88437812 + 2.33333 NA exon (NM_001367624, exon 1 of 1) exon (NM_001367624, exon 1 of 1) 10013 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 641.999 chr15 34367629 34367979 + 2.33333 NA promoter-TSS (NM_153613) promoter-TSS (NM_153613) -608 NM_153613 254531 Hs.352614 NM_153613 ENSG00000176454 LPCAT4 AGPAT7|AYTL3|LPAAT-eta|LPEAT2 lysophosphatidylcholine acyltransferase 4 protein-coding 320.834 chr1 152024173 152024374 + 2.33333 NA Intergenic Intergenic 5995 NR_103561 441908 Hs.656557 NR_103561 NBPF18P - NBPF member 18, pseudogene pseudo 411.833-4 chr22 43231130 43231381 + 2.33333 NA intron (NM_173050, intron 8 of 21) L2c|LINE|L2 18581 NR_134632 105373051 Hs.629290 NR_134632 ENSG00000236272 LOC105373051 - uncharacterized LOC105373051 ncRNA 304.833-9 chr3 65627266 65627480 + 2.33333 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -266443 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 302.167-6 chr18 4800022 4800234 + 2.33333 NA Intergenic AluJb|SINE|Alu -281054 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 706-2 chr11 5992322 5993037 + 2.33333 NA Intergenic Intergenic -5694 NM_001005173 338751 Hs.553703 NM_001005173 ENSG00000183313 OR52L1 OR11-50 olfactory receptor family 52 subfamily L member 1 protein-coding 463.834-2 chr8 23859255 23859748 + 2.33333 NA Intergenic Intergenic -4695 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 466.833-3 chr7 50417999 50418462 + 2.33333 NA Intergenic Intergenic 32120 NM_001287492 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 221-28 chr4 47384242 47384355 + 2.33333 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 79404 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 379.167-4 chr14 99319783 99320415 + 2.33333 NA Intergenic Intergenic -47902 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 351-17 chr8 138953099 138953504 + 2.33333 NA Intergenic Intergenic -39260 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 405.667-9 chr8 115208823 115209005 + 2.33333 NA Intergenic MER34C2|LTR|ERV1 459099 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 699.667 chr14 23631803 23632472 + 2.33333 NA intron (NM_001318835, intron 1 of 4) intron (NM_001318835, intron 1 of 4) 2022 NM_001318835 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 403.666-2 chr2 209463188 209463408 + 2.33333 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 39251 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 310.166-5 chr6 90393509 90393735 + 2.33333 NA Intergenic Intergenic 80880 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 278.333-23 chr8 130988490 130988624 + 2.33333 NA intron (NM_001115, intron 2 of 17) MIRc|SINE|MIR 52352 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 376.999 chr8 107901531 107901758 + 2.33333 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 180295 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 535-4 chr3 131033411 131033697 + 2.33333 NA intron (NM_001353039, intron 3 of 16) intron (NM_001353039, intron 3 of 16) 5826 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 587.666 chr11 14789778 14790437 + 2.33333 NA intron (NM_000922, intron 4 of 15) intron (NM_000922, intron 4 of 15) 102098 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 382.5-2 chr10 122342786 122343101 + 2.33333 NA Intergenic Intergenic -31765 NM_001330178 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 828-2 chr19 50461107 50461655 + 2.33333 NA intron (NM_004533, intron 24 of 27) L1MB5|LINE|L1 -15126 NM_175063 284361 Hs.448941 NM_175063 ENSG00000161671 EMC10 C19orf63|HSM1|HSS1 ER membrane protein complex subunit 10 protein-coding 194.333-39 chrX 101596187 101596347 + 2.33333 NA Intergenic Intergenic 21733 NR_033670 54470 Hs.83530 NM_019007 ENSG00000198960 ARMCX6 GASP10 armadillo repeat containing X-linked 6 protein-coding 544.834 chr1 172886295 172886694 + 2.33333 NA Intergenic L1M4b|LINE|L1 164469 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 415.333-5 chr2 240850999 240851629 + 2.33333 NA Intergenic Intergenic -17510 NM_000030 189 Hs.144567 NM_000030 ENSG00000172482 AGXT AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6 alanine--glyoxylate and serine--pyruvate aminotransferase protein-coding 307.5-26 chrX 79450171 79450429 + 2.33333 NA Intergenic Intergenic -82748 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 668.667 chr1 24635130 24635730 + 2.33333 NA Intergenic Intergenic -7872 NR_159379 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 431.833 chr15 58332028 58332294 + 2.33333 NA Intergenic Intergenic -99830 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 354.667-2 chr10 22249516 22249780 + 2.33333 NA Intergenic AluSc5|SINE|Alu -2424 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 242.334-4 chr19 13278118 13278361 + 2.33333 NA intron (NM_023035, intron 22 of 46) L2a|LINE|L2 127828 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 466.833-2 chr4 122602749 122602988 + 2.33333 NA Intergenic Intergenic -16115 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 373.666-2 chr14 67932949 67933407 + 2.33333 NA intron (NM_133509, intron 7 of 10) L1M2|LINE|L1 109586 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 968.833 chr17 78745223 78745983 + 2.33333 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) -8701 NM_001365040 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 281-26 chr8 85322878 85323120 + 2.33333 NA Intergenic Intergenic 18715 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 478.666-3 chr4 76239877 76240175 + 2.33333 NA intron (NM_001242936, intron 2 of 7) L1MB3|LINE|L1 -11674 NM_001242939 100631383 Hs.720509 NM_001242939 ENSG00000272414 FAM47E-STBD1 FAM47E FAM47E-STBD1 readthrough protein-coding 501.167 chr10 31836973 31837359 + 2.33333 NA intron (NM_001270696, intron 7 of 17) intron (NM_001270696, intron 7 of 17) 71760 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 176.167-30 chr4 18700010 18700104 + 2.33333 NA Intergenic MIRb|SINE|MIR -678182 NR_158565 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 395.333-9 chr5 173461137 173461414 + 2.33333 NA Intergenic Intergenic 113820 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 176.167-36 chr6 22881187 22881275 + 2.33333 NA Intergenic Intergenic -163307 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 536.167 chr10 69507798 69508319 + 2.33333 NA TTS (NR_147091) TTS (NR_147091) 56591 NM_001351263 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 500.833-3 chr8 32549163 32549732 + 2.33333 NA intron (NM_013960, intron 1 of 12) intron (NM_013960, intron 1 of 12) 1136 NM_001160007 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 313.5-26 chrX 152816866 152817484 + 2.33333 NA Intergenic Intergenic 13582 NM_004344 1069 Hs.82794 NM_004344 ENSG00000147400 CETN2 CALT|CEN2 centrin 2 protein-coding 377-12 chr5 55963234 55963664 + 2.33333 NA non-coding (NR_120480, exon 7 of 18) non-coding (NR_120480, exon 7 of 18) 31514 NM_001364277 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 349.833-3 chr2 16551369 16551564 + 2.33333 NA 3' UTR (NM_030797, exon 12 of 12) 3' UTR (NM_030797, exon 12 of 12) 114368 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 253.667-37 chr6 123318808 123318934 + 2.33333 NA intron (NM_006073, intron 23 of 40) MamGypsy2-I|LTR|Gypsy -120733 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 417.834-4 chrX 83469502 83469948 + 2.33333 NA Intergenic Intergenic -38565 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 681.333 chr3 61310679 61311039 + 2.33333 NA Intergenic L1MC4|LINE|L1 -59398 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 225.167-8 chr13 71049255 71049427 + 2.33333 NA intron (NR_047699, intron 1 of 3) intron (NR_047699, intron 1 of 3) 34200 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 314.5-3 chr10 36049360 36049548 + 2.33333 NA Intergenic Intergenic 271152 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 404.666 chr11 59315267 59315460 + 2.33333 NA Intergenic Intergenic -49096 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 314.333-8 chr5 108150749 108150895 + 2.33333 NA intron (NM_001163315, intron 6 of 8) L1MC4|LINE|L1 231276 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 601.834 chr1 26602246 26602987 + 2.33333 NA Intergenic Intergenic 48074 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 199-28 chr20 38460170 38460283 + 2.33333 NA Intergenic L1M5|LINE|L1 10857 NR_002986 677837 Hs.16936 NR_002986 ENSG00000199266 SNORA60 ACA60 small nucleolar RNA, H/ACA box 60 snoRNA 415.666 chr2 144714259 144714500 + 2.33333 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 46412 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 450.666 chr1 214808456 214808829 + 2.33333 NA Intergenic Intergenic -196900 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 569.499 chr15 38389731 38390382 + 2.33333 NA Intergenic L1MD2|LINE|L1 -64071 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 310.833-13 chr8 119739075 119739464 + 2.33333 NA intron (NM_003184, intron 25 of 25) intron (NM_003184, intron 25 of 25) -65879 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 426-14 chr5 22556457 22556888 + 2.33333 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 296672 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 293-11 chr2 202296333 202296540 + 2.33333 NA intron (NM_015934, intron 10 of 14) AluSg|SINE|Alu 3385 NR_003031 692058 NR_003031 ENSG00000238317 SNORD11 HBII-95 small nucleolar RNA, C/D box 11 snoRNA 582.501 chr18 74657391 74658011 + 2.33333 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 26738 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 324.167-6 chr12 31403222 31403585 + 2.33333 NA intron (NM_144973, intron 14 of 20) AluSx1|SINE|Alu -34102 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 525.666-2 chr9 72292307 72292616 + 2.33333 NA Intergenic Intergenic -12975 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 447-6 chr3 3117331 3117694 + 2.33333 NA Intergenic Intergenic -7138 NM_175726 3568 Hs.68876 NM_000564 ENSG00000091181 IL5RA CD125|CDw125|HSIL5R3|IL5R interleukin 5 receptor subunit alpha protein-coding 636-3 chr4 4507855 4508184 + 2.33333 NA intron (NM_001346282, intron 1 of 10) intron (NM_001346282, intron 1 of 10) -26319 NR_126434 104472519 Hs.691848 NR_126434 ENSG00000248221 STX18-IT1 - STX18 intronic transcript 1 ncRNA 585.167 chr15 63477905 63478539 + 2.33333 NA Intergenic Intergenic -26289 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 281.167-22 chr9 73551404 73551634 + 2.33333 NA Intergenic Intergenic 399654 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 232-32 chr4 39548471 39548579 + 2.33333 NA 3' UTR (NM_001317897, exon 5 of 5) 3' UTR (NM_001317897, exon 5 of 5) 20686 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 386.833 chr14 20614702 20615354 + 2.33333 NA Intergenic Intergenic -24205 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 644.333-2 chr13 20924662 20925246 + 2.33333 NA Intergenic Intergenic -22180 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 546.333-2 chr18 72137206 72137604 + 2.33333 NA Intergenic Intergenic -355179 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 233.833-22 chr8 135138853 135139062 + 2.33333 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -95174 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 490.333-2 chr1 182449670 182450066 + 2.33333 NA promoter-TSS (NM_001137669) promoter-TSS (NM_001137669) -278 NM_001366934 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 309.5-21 chr8 130648389 130648651 + 2.33333 NA Intergenic (CCAT)n|Simple_repeat|Simple_repeat -204846 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 573-3 chr12 14230171 14230838 + 2.33333 NA Intergenic L1M2|LINE|L1 -135128 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 525.334 chr11 124961928 124962278 + 2.33333 NA intron (NM_025004, intron 4 of 15) intron (NM_025004, intron 4 of 15) 7901 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 539.667-3 chr3 45494900 45495231 + 2.33333 NA intron (NM_001368263, intron 12 of 20) AluSz|SINE|Alu 14480 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 751.167 chr11 128630285 128630965 + 2.33333 NA Intergenic Intergenic -43067 NM_001143820 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 199.501 chr20 5611898 5612067 + 2.33333 NA promoter-TSS (NM_019593) promoter-TSS (NM_019593) -976 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 225.333-24 chr21 27205894 27206032 + 2.33333 NA Intergenic Intergenic -238875 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 521.333-2 chr10 18739067 18739637 + 2.33333 NA Intergenic Intergenic 79921 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 617.999 chr2 114442326 114442709 + 2.33333 NA promoter-TSS (NM_001321910) promoter-TSS (NM_001321910) -124 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 279.667-28 chrX 34301151 34301402 + 2.33333 NA Intergenic Intergenic -168946 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 619.5 chr13 20494870 20495697 + 2.33333 NA intron (NM_001363647, intron 2 of 6) intron (NM_001363647, intron 2 of 6) 30574 NM_015974 51084 Hs.370703 NM_015974 ENSG00000165475 CRYL1 GDH|HEL30|gul3DH|lambda-CRY crystallin lambda 1 protein-coding 870.333 chr11 4187171 4188014 + 2.33333 NA intron (NR_047550, intron 1 of 1) CpG 440 NR_047550 100506082 Hs.445705 NR_047550 ENSG00000254480 LINC02749 - long intergenic non-protein coding RNA 2749 ncRNA 357.667 chr1 39129447 39129770 + 2.33333 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 45441 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 381.333-6 chr3 30769571 30769818 + 2.33333 NA intron (NM_207359, intron 14 of 14) MamGypLTR1b|LTR|Gypsy 124967 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 786-4 chr5 140244364 140245330 + 2.33333 NA TTS (NM_002622) TTS (NM_002622) 58254 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 380.334-4 chr2 31613755 31614079 + 2.33333 NA Intergenic THE1B|LTR|ERVL-MaLR -32979 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 392-8 chr5 36728146 36728457 + 2.33333 NA Intergenic MIRb|SINE|MIR 121695 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 464.667-2 chr13 60858414 60858776 + 2.33333 NA Intergenic HAL1|LINE|L1 185640 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 571.667 chr13 77779503 77779907 + 2.33333 NA Intergenic Intergenic 38486 NM_001366666 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 428-5 chr14 21498499 21499257 + 2.33333 NA 3' UTR (NM_014828, exon 9 of 9) 3' UTR (NM_014828, exon 9 of 9) 12462 NM_019852 56339 Hs.168799 NM_019852 ENSG00000165819 METTL3 IME4|M6A|MT-A70|Spo8|hMETTL3 methyltransferase like 3 protein-coding 707.834 chr9 87684575 87685165 + 2.33333 NA intron (NM_004938, intron 20 of 25) intron (NM_004938, intron 20 of 25) -41249 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 370-12 chr3 158791541 158791744 + 2.33333 NA Intergenic Intergenic -10412 NR_110328 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 1052.33 chr21 17924965 17925692 + 2.33333 NA intron (NM_001204177, intron 1 of 4) intron (NM_001204177, intron 1 of 4) 7988 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 245-27 chr4 72741180 72741330 + 2.33333 NA Intergenic Intergenic -172034 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 299.333-19 chr7 140518018 140518399 + 2.33333 NA TTS (NM_015689) TTS (NM_015689) -38639 NM_001291663 23608 Hs.744883 NM_013446 ENSG00000133606 MKRN1 RNF61 makorin ring finger protein 1 protein-coding 683.833 chr13 35818537 35819222 + 2.33333 NA intron (NM_001195415, intron 7 of 13) intron (NM_001195415, intron 7 of 13) 36788 NM_001195430 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 408.334 chr11 78574957 78575232 + 2.33333 NA promoter-TSS (NM_001243251) promoter-TSS (NM_001243251) -230 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 391 chr1 167242797 167243184 + 2.33333 NA intron (NM_001365848, intron 2 of 17) intron (NM_001365848, intron 2 of 17) 22104 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 464.333-6 chr7 22561022 22561267 + 2.33333 NA Intergenic MER33|DNA|hAT-Charlie -2193 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 550-2 chr11 44133177 44133575 + 2.33333 NA intron (NM_207122, intron 7 of 13) intron (NM_207122, intron 7 of 13) 37179 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 473.334-5 chr9 137441954 137442356 + 2.33333 NA promoter-TSS (NM_001033113) promoter-TSS (NM_001033113) -706 NM_001033113 377841 Hs.512562 NM_198585 ENSG00000188833 ENTPD8 E-NTPDase|GLSR2492|NTPDase-8|UNQ2492 ectonucleoside triphosphate diphosphohydrolase 8 protein-coding 348-10 chr5 44808709 44808994 + 2.33333 NA promoter-TSS (NM_016640) promoter-TSS (NM_016640) -58 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 426.999 chr1 28327005 28327280 + 2.33333 NA Intergenic L2b|LINE|L2 -1898 NM_017638 54797 Hs.479911 NM_017638 ENSG00000130772 MED18 SRB5|p28b mediator complex subunit 18 protein-coding 477.168 chr5 79954119 79954509 + 2.33333 NA intron (NR_131226, intron 2 of 2) L1ME3Cz|LINE|L1 17735 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 261.667 chr1 7401886 7402074 + 2.33333 NA intron (NM_001349608, intron 4 of 21) MIRc|SINE|MIR -12226 NR_146201 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 824.666-2 chr12 12819776 12820683 + 2.33333 NA intron (NM_201224, intron 2 of 10) intron (NM_201224, intron 2 of 10) 6883 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 364.667-3 chr11 94417163 94417366 + 2.33333 NA TTS (NM_005591) TTS (NM_005591) -15845 NM_001330345 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 509.833-6 chr7 71751897 71752341 + 2.33333 NA Intergenic Intergenic -444349 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 318.5-6 chr4 4259622 4259838 + 2.33333 NA Intergenic Intergenic -11488 NM_032927 85013 Hs.12845 NM_032927 ENSG00000132406 TMEM128 - transmembrane protein 128 protein-coding 597.667 chr16 77660434 77661228 + 2.33333 NA Intergenic L1MC1|LINE|L1 -61661 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 251-26 chr4 59030057 59030217 + 2.33333 NA intron (NR_133942, intron 1 of 1) L1MC5a|LINE|L1 16564 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 278.834-14 chr8 50974929 50975122 + 2.33333 NA Intergenic L1MD2|LINE|L1 810894 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 329.666 chr1 159636314 159636514 + 2.33333 NA Intergenic L1ME4b|LINE|L1 48588 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 930.334-2 chr2 16756980 16757911 + 2.33333 NA Intergenic Intergenic -91611 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 323-2 chr11 25734684 25735001 + 2.33333 NA Intergenic Intergenic -454281 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 585.333-3 chr17 79793614 79794170 + 2.33333 NA 3' UTR (NM_020649, exon 5 of 5) 3' UTR (NM_020649, exon 5 of 5) 3185 NM_020649 57332 Hs.387258 NM_020649 ENSG00000141570 CBX8 PC3|RC1 chromobox 8 protein-coding 352.166 chr1 168041163 168041329 + 2.33333 NA intron (NM_001017977, intron 11 of 18) L1ME3Cz|LINE|L1 42586 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 521-3 chr22 27921821 27922207 + 2.33333 NA intron (NR_026963, intron 1 of 4) intron (NR_026963, intron 1 of 4) -1402 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 541.001 chr4 101730614 101731521 + 2.33333 NA Intergenic Intergenic -59540 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 311.666-4 chr12 6691087 6691284 + 2.33333 NA Intergenic Intergenic -1613 NM_001135734 171017 Hs.103315 NM_133476 ENSG00000126746 ZNF384 CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 zinc finger protein 384 protein-coding 429.666-5 chr3 160687116 160687400 + 2.33333 NA Intergenic MIRb|SINE|MIR 10098 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 330.333-9 chr5 108269128 108269287 + 2.33333 NA intron (NM_001163315, intron 4 of 8) MER34|LTR|ERV1 112891 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 403.5-8 chr5 90866437 90866881 + 2.33333 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 307862 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 245-12 chr16 7202124 7202247 + 2.33333 NA intron (NM_018723, intron 4 of 15) L1MB3|LINE|L1 -130660 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 477.5-7 chr8 59630953 59631498 + 2.33333 NA Intergenic Intergenic 512015 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 603.166-2 chr5 8184697 8185093 + 2.33333 NA Intergenic Intergenic 272669 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 320.667-7 chr11 131071769 131072157 + 2.33333 NA Intergenic MIRc|SINE|MIR -155476 NM_001347927 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 259.5-27 chr5 26779798 26779925 + 2.33333 NA Intergenic Intergenic 258725 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 480.5-2 chr1 216749859 216750278 + 2.33333 NA intron (NM_001243513, intron 1 of 7) (CCTT)n|Simple_repeat|Simple_repeat -26596 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 432.333-10 chr7 81775976 81776262 + 2.33333 NA Intergenic Intergenic -6072 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 210.666-2 chr16 77226931 77227034 + 2.33333 NA Intergenic Intergenic 27574 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 680.333 chr10 5434144 5434608 + 2.33333 NA intron (NM_001047160, intron 3 of 11) HAL1M8|LINE|L1 -12175 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 257.333-13 chr18 43194534 43194669 + 2.33333 NA Intergenic MER49|LTR|ERV1 -78909 NM_001272077 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 315.166-2 chr5 98860581 98860880 + 2.33333 NA intron (NR_157079, intron 31 of 34) intron (NR_157079, intron 31 of 34) 65804 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 502 chr1 29379253 29379726 + 2.33333 NA Intergenic L1MA4|LINE|L1 -29375 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 316.166-2 chr15 74382332 74382663 + 2.33333 NA intron (NR_146881, intron 2 of 3) intron (NR_146881, intron 2 of 3) 3415 NR_146881 105370894 NR_146881 LINC02255 - long intergenic non-protein coding RNA 2255 ncRNA 435.666-5 chr3 124707739 124708053 + 2.33333 NA intron (NM_007064, intron 24 of 26) L1MEf|LINE|L1 -22470 NR_033437 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 898.666 chr22 33301753 33302595 + 2.33333 NA intron (NM_133642, intron 12 of 14) intron (NM_133642, intron 12 of 14) 134495 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 449.999 chr13 91349123 91349342 + 2.33333 NA intron (NR_027350, intron 1 of 1) intron (NR_027350, intron 1 of 1) -1373 NR_029487 406952 NR_029487 ENSG00000284536 MIR17 MIR17-5p|MIR91|MIRN17|MIRN91|hsa-mir-17|miR-17|miR17-3p|miRNA17|miRNA91 microRNA 17 ncRNA 511.667-3 chr8 103111450 103111910 + 2.33333 NA Intergenic Intergenic -9352 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 335-2 chr1 86759554 86759757 + 2.33333 NA Intergenic MLT1G1|LTR|ERVL-MaLR 55079 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 612.666 chr17 49556281 49556803 + 2.33333 NA intron (NR_103773, intron 1 of 2) intron (NR_103773, intron 1 of 2) 17522 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 376.834-2 chr11 103008824 103009073 + 2.33333 NA Intergenic L2c|LINE|L2 -53216 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 716-3 chr9 104494979 104495791 + 2.33333 NA Intergenic AluSx|SINE|Alu -8878 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 385.333-9 chr5 81437282 81437568 + 2.33333 NA intron (NM_012446, intron 15 of 16) intron (NM_012446, intron 15 of 16) -43291 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 666.666 chr1 219067009 219067720 + 2.33333 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 106424 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 422.666-7 chr9 8379812 8380148 + 2.33333 NA intron (NM_130392, intron 22 of 30) MIRb|SINE|MIR 353966 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 635.667-4 chr7 87886862 87887474 + 2.33333 NA intron (NM_001318061, intron 4 of 11) intron (NM_001318061, intron 4 of 11) 10675 NM_001318060 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 581.667-8 chr8 137625555 137626027 + 2.33333 NA Intergenic Intergenic -212203 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 631 chr1 46446620 46447284 + 2.33333 NA non-coding (NR_121680, exon 3 of 3) non-coding (NR_121680, exon 3 of 3) 2752 NR_121680 101929651 Hs.638707 NR_121680 ENSG00000224863 LINC01398 - long intergenic non-protein coding RNA 1398 ncRNA 203.666-3 chr2 38638105 38638199 + 2.33333 NA Intergenic Intergenic -27962 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 736.833 chr1 235253043 235253907 + 2.33333 NA intron (NR_135074, intron 5 of 24) intron (NR_135074, intron 5 of 24) -63359 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 379.167-5 chr16 46689145 46689693 + 2.33333 NA promoter-TSS (NM_014321) promoter-TSS (NM_014321) -240 NR_037620 23594 Hs.49760 NM_014321 ENSG00000091651 ORC6 ORC6L origin recognition complex subunit 6 protein-coding 259.333-18 chr17 66643189 66643460 + 2.33333 NA intron (NM_002737, intron 4 of 16) Charlie15b|DNA|hAT-Charlie -143748 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 402-11 chr7 1685594 1685832 + 2.33333 NA Intergenic L1MB8|LINE|L1 -2406 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 442.833-3 chr13 73708371 73708791 + 2.33333 NA intron (NM_007249, intron 7 of 7) intron (NM_007249, intron 7 of 7) 144337 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 182.666-4 chr14 98138754 98138841 + 2.33333 NA Intergenic Intergenic -160673 NR_152750 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 282.833-15 chr8 29087493 29087694 + 2.33333 NA intron (NM_015254, intron 37 of 39) L3|LINE|CR1 175477 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 510.499 chr14 60061613 60061841 + 2.33333 NA intron (NR_075071, intron 31 of 32) intron (NR_075071, intron 31 of 32) -30184 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 388.499 chr17 50270267 50270500 + 2.33333 NA Intergenic Intergenic -1023 NM_001168215 162461 Hs.224630 NM_153229 ENSG00000167105 TMEM92 - transmembrane protein 92 protein-coding 298.667-4 chr10 79195399 79195872 + 2.33333 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 126669 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 298.666 chr1 43141584 43141821 + 2.33333 NA Intergenic L1MA6|LINE|L1 -6202 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 416.666 chr10 71207982 71208249 + 2.33333 NA Intergenic Intergenic -4455 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 565.834 chr13 68304085 68304712 + 2.33333 NA Intergenic A-rich|Low_complexity|Low_complexity 580927 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 437.5-6 chr4 30783464 30783795 + 2.33333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 63260 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 451.999 chr1 206106796 206107047 + 2.33333 NA TTS (NM_000707) TTS (NM_000707) 10467 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 712.5-4 chr3 1086830 1087328 + 2.33333 NA Intergenic Intergenic -5945 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 272-17 chr15 58470256 58470484 + 2.33333 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 28365 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 373-4 chr12 8608895 8609423 + 2.33333 NA intron (NM_001330343, intron 1 of 4) intron (NM_001330343, intron 1 of 4) 3700 NM_001330343 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 605.333 chr13 92175136 92175588 + 2.33333 NA intron (NM_004466, intron 7 of 7) L2a|LINE|L2 176845 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 382-11 chr8 90118995 90119169 + 2.33333 NA Intergenic Intergenic -36203 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 688.833 chr22 30255748 30256224 + 2.33333 NA Intergenic Intergenic -9227 NM_001257135 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI LIF interleukin 6 family cytokine protein-coding 490.833 chr3 42099748 42100219 + 2.33333 NA intron (NM_001349247, intron 1 of 16) intron (NM_001349247, intron 1 of 16) 8626 NM_001042646 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 296.5-8 chr11 105705194 105705412 + 2.33333 NA intron (NR_046356, intron 2 of 16) L1MC4a|LINE|L1 94597 NM_001112812 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 366.999 chr8 75336888 75337080 + 2.33333 NA Intergenic L1MC1|LINE|L1 -58095 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 216.666-8 chr8 46513622 46513726 + 2.33333 NA Intergenic ALR/Alpha|Satellite|centr 103969 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 315.666-4 chr4 33167947 33168211 + 2.33333 NA Intergenic Intergenic 817041 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 795-2 chr2 15588305 15588899 + 2.33333 NA Intergenic Intergenic -3266 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 421-5 chr4 77052205 77052492 + 2.33333 NA intron (NM_006835, intron 6 of 6) intron (NM_006835, intron 6 of 6) 22562 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 1334.5 chr20 40689747 40690639 + 2.33333 NA promoter-TSS (NM_005461) promoter-TSS (NM_005461) -957 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 259-19 chr18 56882382 56882615 + 2.33333 NA intron (NM_015285, intron 21 of 27) Charlie2b|DNA|hAT-Charlie 189621 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 675.334 chr8 109737567 109738157 + 2.33333 NA Intergenic L2a|LINE|L2 -46071 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 546.833-4 chr6 131924665 131925092 + 2.33333 NA Intergenic ORSL-2a|DNA|hAT-Tip100 26494 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 651.334 chr4 110343948 110344568 + 2.33333 NA Intergenic L2|LINE|L2 -131897 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 427.5-5 chr6 95133806 95134008 + 2.33333 NA Intergenic Intergenic 443544 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 428.667-9 chr5 85613989 85614214 + 2.33333 NA Intergenic Intergenic -668343 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 303.166-4 chr20 14333405 14333688 + 2.33333 NA intron (NM_198391, intron 1 of 2) intron (NM_198391, intron 1 of 2) 4066 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 497.667-2 chr2 97860050 97860547 + 2.33333 NA intron (NM_015348, intron 4 of 40) intron (NM_015348, intron 4 of 40) 125892 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 350.166-3 chr6 42497235 42497474 + 2.33333 NA Intergenic L1PBa|LINE|L1 -45130 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 273.166-4 chr3 173060269 173060444 + 2.33333 NA intron (NM_031955, intron 2 of 10) intron (NM_031955, intron 2 of 10) 80879 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 385.666-2 chr11 10899885 10900209 + 2.33333 NA Intergenic Intergenic 41830 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 659.334 chr2 85420259 85421154 + 2.33333 NA intron (NM_201594, intron 1 of 20) intron (NM_201594, intron 1 of 20) 1775 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 841.833-2 chr22 33000300 33001317 + 2.33333 NA intron (NM_003490, intron 2 of 13) intron (NM_003490, intron 2 of 13) 6013 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 767-2 chr1 28648631 28649255 + 2.33333 NA TTS (NR_146731) TTS (NR_146731) 343 NR_004407 26824 Hs.640266 NR_004407 ENSG00000274978 RNU11 RNU11-1|U11 RNA, U11 small nuclear snRNA 1014.33 chr2 74714774 74715573 + 2.33333 NA Intergenic Intergenic 60926 NM_001271661 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 313.5-2 chr1 23500240 23500452 + 2.33333 NA Intergenic L2c|LINE|L2 -16167 NM_001143778 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 209.5-10 chr13 45675045 45675179 + 2.33333 NA Intergenic Intergenic 26072 NR_125786 103752581 NR_125786 LINC01055 - long intergenic non-protein coding RNA 1055 ncRNA 329.333 chr11 66289211 66289764 + 2.33333 NA promoter-TSS (NM_001300861) promoter-TSS (NM_001300861) -344 NM_001300861 10897 Hs.446445 NM_020470 ENSG00000174851 YIF1A 54TM|FinGER7|YIF1|YIF1P Yip1 interacting factor homolog A, membrane trafficking protein protein-coding 225-39 chr8 119907936 119908061 + 2.33333 NA intron (NM_001283012, intron 1 of 6) MER21C|LTR|ERVL 34276 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 374-8 chr8 105688880 105689043 + 2.33333 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 369418 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 364.166-2 chr9 74454149 74454429 + 2.33333 NA Intergenic Intergenic -43046 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 317-4 chr16 50747753 50748017 + 2.33333 NA intron (NM_015247, intron 3 of 19) intron (NM_015247, intron 3 of 19) 5580 NR_130462 100422972 NR_130462 ENSG00000264947 MIR3181 - microRNA 3181 ncRNA 809.499 chr21 31650119 31650712 + 2.33333 NA Intergenic L1MB7|LINE|L1 -9207 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 626.666 chr11 13344059 13344569 + 2.33333 NA intron (NM_001351821, intron 3 of 19) MER91B|DNA|hAT-Tip100 66587 NM_001351821 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 255.5-19 chr2 106638008 106638320 + 2.33333 NA Intergenic Intergenic 150800 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 352.5-8 chr18 4025784 4026129 + 2.33333 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 63603 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 265-19 chr4 136887712 136887899 + 2.33333 NA intron (NR_149105, intron 3 of 3) L2a|LINE|L2 -305951 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 259.666-2 chr18 5496059 5496187 + 2.33333 NA intron (NM_001330557, intron 1 of 21) intron (NM_001330557, intron 1 of 21) 44433 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 645.334-4 chr4 59246834 59247556 + 2.33333 NA Intergenic Intergenic 233622 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 334.166 chr1 64816128 64816356 + 2.33333 NA intron (NM_001366165, intron 11 of 11) intron (NM_001366165, intron 11 of 11) 71167 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 521.333-4 chr19 6424897 6425332 + 2.33333 NA promoter-TSS (NM_001366299) promoter-TSS (NM_001366299) -303 NM_001366299 8570 Hs.727344 NM_003685 ENSG00000088247 KHSRP FBP2|FUBP2|KSRP|p75 KH-type splicing regulatory protein protein-coding 576.166 chr5 138825047 138825438 + 2.33333 NA intron (NM_001323985, intron 6 of 17) intron (NM_001323985, intron 6 of 17) -49988 NM_001324002 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 393.666 chr1 117016040 117016332 + 2.33333 NA intron (NM_001256109, intron 4 of 9) intron (NM_001256109, intron 4 of 9) 14436 NM_004258 9398 Hs.654598 NM_004258 ENSG00000134256 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 1034-2 chrX 14039139 14039805 + 2.33333 NA Intergenic Intergenic -9580 NM_017856 54960 Hs.592237 NM_017856 ENSG00000046647 GEMIN8 FAM51A1 gem nuclear organelle associated protein 8 protein-coding 564.833-4 chr19 10269215 10269887 + 2.33333 NA Intergenic L2a|LINE|L2 -1569 NM_000201 3383 Hs.643447 NM_000201 ENSG00000090339 ICAM1 BB2|CD54|P3.58 intercellular adhesion molecule 1 protein-coding 563.667 chr3 15378399 15378694 + 2.33333 NA Intergenic L1MEg|LINE|L1 -37166 NM_001018009 9467 Hs.257761 NM_004844 ENSG00000131370 SH3BP5 SAB|SH3BP-5 SH3 domain binding protein 5 protein-coding 190.666-2 chr10 109603150 109603343 + 2.33333 NA Intergenic Intergenic 320000 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 503.166 chr2 138934952 138935330 + 2.33333 NA Intergenic Intergenic 37817 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 710.167-2 chr7 39464922 39465509 + 2.33333 NA 3' UTR (NM_001166018, exon 11 of 11) 3' UTR (NM_001166018, exon 11 of 11) -58869 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 271-6 chr11 5365748 5366002 + 2.33333 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 14367 NM_001004750 390058 Hs.553730 NM_001004750 ENSG00000176239 OR51B6 HOR5'Beta6 olfactory receptor family 51 subfamily B member 6 protein-coding 487.834 chr1 170074615 170074943 + 2.33333 NA promoter-TSS (NM_001204514) promoter-TSS (NM_001204514) -41 NM_001204514 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 168.333-33 chr2 54178303 54178393 + 2.33333 NA intron (NM_138448, intron 3 of 3) MamSINE1|SINE|tRNA-RTE 55065 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 474.499 chr8 106762043 106762376 + 2.33333 NA intron (NM_139166, intron 1 of 1) MIR|SINE|MIR 8035 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 618.166-2 chr22 32206637 32207111 + 2.33333 NA intron (NR_149072, intron 1 of 3) intron (NR_149072, intron 1 of 3) 1759 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 867.667 chr10 90871189 90871997 + 2.33333 NA promoter-TSS (NM_001104546) promoter-TSS (NM_001104546) -359 NM_006413 10556 Hs.139120 NM_006413 ENSG00000148688 RPP30 TSG15 ribonuclease P/MRP subunit p30 protein-coding 299.833-13 chr4 41396465 41396862 + 2.33333 NA intron (NM_001289122, intron 1 of 25) AluSx1|SINE|Alu 35856 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 871.501 chr19 38243761 38244447 + 2.33333 NA Intergenic Intergenic 12270 NM_033256 94274 Hs.631569 NM_033256 ENSG00000167641 PPP1R14A CPI-17|CPI17|PPP1INL protein phosphatase 1 regulatory inhibitor subunit 14A protein-coding 329.5-14 chr22 24720827 24721164 + 2.33333 NA intron (NM_001008496, intron 19 of 20) L1MEd|LINE|L1 -43506 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 265.333-7 chr16 81737457 81737662 + 2.33333 NA Intergenic L1MB3|LINE|L1 -41732 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 441-3 chr7 16237873 16238111 + 2.33333 NA intron (NR_038946, intron 2 of 4) intron (NR_038946, intron 2 of 4) 27506 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 778.166-2 chr6 123380292 123380909 + 2.33333 NA intron (NM_001251987, intron 16 of 20) intron (NM_001251987, intron 16 of 20) -59004 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 615.333-2 chr1 64245372 64245787 + 2.33333 NA non-coding (NR_158768, exon 10 of 10) non-coding (NR_158768, exon 10 of 10) 41956 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 271.167-3 chr11 60830962 60831260 + 2.33333 NA Intergenic Intergenic -11002 NM_024098 79080 Hs.4253 NM_024098 ENSG00000110104 CCDC86 - coiled-coil domain containing 86 protein-coding 194.333-37 chr8 86790427 86790515 + 2.33333 NA Intergenic Intergenic -46796 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 1030.5-2 chr2 72325788 72326701 + 2.33333 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -178382 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 1110.5-2 chr7 101243585 101245164 + 2.33333 NA intron (NM_016068, intron 1 of 4) intron (NM_016068, intron 1 of 4) 707 NM_016068 51024 Hs.423968 NM_016068 ENSG00000214253 FIS1 CGI-135|TTC11 fission, mitochondrial 1 protein-coding 435.833-5 chr2 36478182 36478621 + 2.33333 NA intron (NM_016441, intron 6 of 16) intron (NM_016441, intron 6 of 16) 119767 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 369.5-4 chr12 83803918 83804240 + 2.33333 NA Intergenic MIR|SINE|MIR 1108720 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 439.5 chr11 124586109 124586670 + 2.33333 NA Intergenic Intergenic 16392 NM_001005194 390275 Hs.632104 NM_001005194 ENSG00000196119 OR8A1 OR11-318|OST025 olfactory receptor family 8 subfamily A member 1 protein-coding 463.333-5 chr6 44079277 44079555 + 2.33333 NA Intergenic Intergenic -4764 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 401.333-8 chr6 46410491 46410739 + 2.33333 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) 80708 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 451.333-3 chr11 43168934 43169232 + 2.33333 NA Intergenic SATR1|Satellite|Satellite 100286 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 625.167 chr17 4731058 4731854 + 2.33333 NA promoter-TSS (NM_001305000) promoter-TSS (NM_001305000) 28 NM_001001683 400569 Hs.513885 NM_001001683 ENSG00000161920 MED11 HSPC296 mediator complex subunit 11 protein-coding 690.668 chr5 180071839 180072415 + 2.33333 NA promoter-TSS (NM_018434) promoter-TSS (NM_018434) -368 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 224.667-22 chr19 4809696 4809837 + 2.33333 NA Intergenic Intergenic 18032 NM_018708 55527 Hs.515082 NM_018708 ENSG00000141965 FEM1A EPRAP fem-1 homolog A protein-coding 310.667-9 chr2 131154173 131154364 + 2.33333 NA Intergenic Intergenic 49421 NM_017958 55041 Hs.469944 NM_017958 ENSG00000115762 PLEKHB2 EVT2 pleckstrin homology domain containing B2 protein-coding 788.833 chr3 70090101 70090897 + 2.33333 NA Intergenic Intergenic 90755 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 343.333-9 chr3 108586896 108587331 + 2.33333 NA intron (NM_020890, intron 1 of 20) L1ME3|LINE|L1 2325 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 CIP2A KIAA1524|p90 cell proliferation regulating inhibitor of protein phosphatase 2A protein-coding 630.334-2 chr2 165618464 165618917 + 2.33333 NA intron (NM_024969, intron 2 of 4) intron (NM_024969, intron 2 of 4) 46354 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 487 chr2 151260489 151261072 + 2.33333 NA intron (NM_198557, intron 1 of 3) intron (NM_198557, intron 1 of 3) 1083 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 302.333-9 chr3 54901257 54901466 + 2.33333 NA promoter-TSS (NR_046666) promoter-TSS (NR_046666) -106 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 378-23 chr9 133149408 133149729 + 2.33333 NA promoter-TSS (NM_001042368) promoter-TSS (NM_001042368) -358 NM_001042368 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 219.666-3 chr14 30460002 30460148 + 2.33333 NA intron (NR_151720, intron 3 of 3) MamRep605|LTR?|LTR? -99048 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 665.666 chr2 169188438 169189011 + 2.33333 NA intron (NM_004525, intron 48 of 78) intron (NM_004525, intron 48 of 78) 107617 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 381.333-8 chr7 4253038 4253313 + 2.33333 NA intron (NM_001079653, intron 18 of 19) L1MB7|LINE|L1 -118338 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 458.333 chr1 165257901 165258218 + 2.33333 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 98182 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 544.5-3 chr11 106076940 106077549 + 2.33333 NA promoter-TSS (NM_015423) promoter-TSS (NM_015423) 103 NM_198439 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 533.999 chr4 16916296 16917465 + 2.33333 NA Intergenic Intergenic -18071 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 428.999 chr9 73676450 73676721 + 2.33333 NA Intergenic L1M8|LINE|L1 524720 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 1054 chr17 29591486 29592175 + 2.33333 NA Intergenic Intergenic -1302 NM_152345 124930 Hs.662164 NM_152345 ENSG00000198720 ANKRD13B - ankyrin repeat domain 13B protein-coding 314.666-4 chr6 166078413 166078659 + 2.33333 NA Intergenic MLT1H2|LTR|ERVL-MaLR -19184 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 426.5 chr1 157490690 157491182 + 2.33333 NA Intergenic AluJb|SINE|Alu 61579 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 835.167 chr1 48494032 48494826 + 2.33333 NA Intergenic Intergenic -22221 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 645.666 chr11 5204592 5205334 + 2.33333 NA Intergenic Intergenic -4263 NM_001004760 283111 Hs.553670 NM_001004760 ENSG00000176742 OR51V1 OR11-36|OR51A12 olfactory receptor family 51 subfamily V member 1 protein-coding 897.167 chr3 2156059 2156877 + 2.33333 NA intron (NM_175607, intron 2 of 24) MamGypLTR3|LTR|Gypsy -12227 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 333.999-2 chr2 107621570 107621839 + 2.33333 NA Intergenic MER41B|LTR|ERV1 92285 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 461.999-2 chrX 7357976 7358410 + 2.33333 NA Intergenic Intergenic 105720 NM_001320754 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 220.5-25 chr2 175174196 175174326 + 2.33333 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -6055 NM_001256094 1386 Hs.592510 NM_001880 ENSG00000115966 ATF2 CRE-BP1|CREB-2|CREB2|HB16|TREB7 activating transcription factor 2 protein-coding 434.667 chr3 88630760 88631114 + 2.33333 NA Intergenic Intergenic 292481 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 579.999-2 chr21 45554563 45555051 + 2.33333 NA intron (NM_001352511, intron 1 of 5) intron (NM_001352511, intron 1 of 5) 8218 NM_001352511 6573 Hs.84190 NM_003056 ENSG00000173638 SLC19A1 CHMD|FOLT|IFC-1|IFC1|REFC|RFC|RFC1 solute carrier family 19 member 1 protein-coding 278.834-7 chr4 35199185 35199370 + 2.33333 NA Intergenic Intergenic -929530 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 408.333-8 chr8 29153404 29153638 + 2.33333 NA intron (NM_015254, intron 14 of 39) intron (NM_015254, intron 14 of 39) 109549 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 465.501-3 chr12 22435016 22435413 + 2.33333 NA Intergenic L1ME1|LINE|L1 -100500 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 312.333-3 chr10 80595831 80596072 + 2.33333 NA intron (NM_207372, intron 4 of 6) intron (NM_207372, intron 4 of 6) -53846 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 218-29 chr3 119275090 119275357 + 2.33333 NA intron (NR_046574, intron 3 of 3) intron (NR_046574, intron 3 of 3) -19160 NM_020754 57514 Hs.668218 NM_020754 ENSG00000031081 ARHGAP31 AOS1|CDGAP Rho GTPase activating protein 31 protein-coding 603.5 chr11 71420388 71421081 + 2.33333 NA intron (NR_038862, intron 2 of 2) intron (NR_038862, intron 2 of 2) 2620 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 392.999-2 chr2 158733605 158733900 + 2.33333 NA intron (NR_135242, intron 1 of 3) Kanga1a|DNA|TcMar-Tc2 1250 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 423 chr1 175637098 175637552 + 2.33333 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 106270 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 522-2 chr12 47651521 47651829 + 2.33333 NA Intergenic AluSz6|SINE|Alu 54355 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 959.5 chr4 82461343 82462411 + 2.33333 NA TTS (NM_001292017) TTS (NM_001292017) 31287 NR_120457 58478 Hs.18442 NM_021204 ENSG00000145293 ENOPH1 E1|MASA|MST145|mtnC enolase-phosphatase 1 protein-coding 462.166-2 chr19 53792773 53793216 + 2.33333 NA TTS (NM_001277129) TTS (NM_001277129) 4289 NR_029866 442918 NR_029866 ENSG00000199143 MIR373 MIRN373|hsa-mir-373|miRNA373|mir-373 microRNA 373 ncRNA 411.166-7 chr5 53478303 53478838 + 2.33333 NA Intergenic Intergenic -2059 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 322.333-5 chr14 64443044 64443274 + 2.33333 NA intron (NM_005956, intron 21 of 27) intron (NM_005956, intron 21 of 27) -22340 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 1409 chr18 4106201 4107392 + 2.33333 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 144443 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 1089.33 chr14 36941937 36943009 + 2.33333 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) 9918 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 759.666 chr12 42466424 42466876 + 2.33333 NA intron (NM_001144881, intron 5 of 7) intron (NM_001144881, intron 5 of 7) 16965 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 377-13 chr5 74870160 74870420 + 2.33333 NA Intergenic Intergenic -3324 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 634 chr14 68843880 68844522 + 2.33333 NA Intergenic Intergenic -47958 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 415.666-4 chr8 37347324 37347605 + 2.33333 NA Intergenic L1ME1|LINE|L1 146449 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 225.333-20 chr17 79797032 79797301 + 2.33333 NA promoter-TSS (NM_020649) promoter-TSS (NM_020649) -89 NM_020649 57332 Hs.387258 NM_020649 ENSG00000141570 CBX8 PC3|RC1 chromobox 8 protein-coding 843.999 chr7 104980986 104981665 + 2.33333 NA TTS (NR_039981) TTS (NR_039981) 9840 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 470.999 chr12 77131754 77132168 + 2.33333 NA Intergenic Intergenic -66392 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 255.5-22 chr20 54392529 54392664 + 2.33333 NA Intergenic L1ME2|LINE|L1 -82997 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 584.333 chr18 7922567 7923004 + 2.33333 NA intron (NM_002845, intron 4 of 30) (TAATTTT)n|Simple_repeat|Simple_repeat 355469 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 487.667 chr1 156583962 156584490 + 2.33333 NA intron (NM_001105669, intron 5 of 9) intron (NM_001105669, intron 5 of 9) 2861 NM_001105669 164118 Hs.447851 NM_001105669 ENSG00000187862 TTC24 - tetratricopeptide repeat domain 24 protein-coding 190.667-37 chr3 49412097 49412230 + 2.33333 NA promoter-TSS (NM_001313941) promoter-TSS (NM_001313941) -43 NM_022171 6988 Hs.517962 NM_022171 ENSG00000145022 TCTA - T cell leukemia translocation altered protein-coding 367.666 chr1 185646246 185646532 + 2.33333 NA Intergenic Intergenic -17901 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 378-10 chr18 9951199 9951823 + 2.33333 NA intron (NM_194434, intron 5 of 5) L2c|LINE|L2 37495 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 180.333-60 chr9 134689705 134689784 + 2.33333 NA intron (NM_001278074, intron 1 of 65) MLT1K|LTR|ERVL-MaLR -36901 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 748.667 chr1 154936654 154937491 + 2.33333 NA promoter-TSS (NM_001323011) promoter-TSS (NM_001323011) -353 NM_001323011 10654 Hs.30954 NM_006556 ENSG00000163344 PMVK HUMPMKI|PMK|PMKA|PMKASE|POROK1 phosphomevalonate kinase protein-coding 450-2 chr1 214213716 214214095 + 2.33333 NA Intergenic Intergenic -67254 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 224.166-2 chr15 73207240 73207410 + 2.33333 NA intron (NM_002499, intron 7 of 28) MIRb|SINE|MIR -92585 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 698.5-2 chr6 43773396 43774118 + 2.33333 NA intron (NM_001287044, intron 1 of 6) intron (NM_001287044, intron 1 of 6) 1789 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 174.667-50 chr7 24821627 24821765 + 2.33333 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -63757 NM_004403 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 336.666-2 chr12 59127780 59127968 + 2.33333 NA Intergenic Intergenic -207336 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 549.334-2 chr21 25826696 25827116 + 2.33333 NA Intergenic Intergenic -91252 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 356.001 chr20 53869969 53870247 + 2.33333 NA Intergenic Intergenic 5601 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 432.666-2 chr11 5187669 5187886 + 2.33333 NA Intergenic Intergenic -9066 NM_001348257 283110 NM_001348257 OR52Z1 OR52Z1P olfactory receptor family 52 subfamily Z member 1 (gene/pseudogene) protein-coding 449-4 chr7 105267935 105268200 + 2.33333 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 1010 NM_001350744 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 484.166 chr1 83931589 83931925 + 2.33333 NA intron (NM_001350215, intron 8 of 19) intron (NM_001350215, intron 8 of 19) 67375 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 445.833-3 chr7 7653504 7653788 + 2.33333 NA intron (NM_002947, intron 4 of 7) intron (NM_002947, intron 4 of 7) 12894 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 598-2 chr13 78978381 78979172 + 2.33333 NA Intergenic Intergenic -138726 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 921.333 chr10 47024337 47025173 + 2.33333 NA Intergenic Intergenic 113033 NM_001042361 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 583.667-3 chr11 103201816 103202187 + 2.33333 NA intron (NM_001377, intron 50 of 88) intron (NM_001377, intron 50 of 88) 92575 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 510.5-2 chr14 44961922 44962410 + 2.33333 NA promoter-TSS (NM_001308112) promoter-TSS (NM_001308112) -24 NM_001308120 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 192.666-8 chr7 5613660 5613745 + 2.33333 NA Intergenic Intergenic 20886 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 354-14 chr4 176270778 176270939 + 2.33333 NA Intergenic Intergenic -1636 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 264.333-25 chr5 74949173 74949405 + 2.33333 NA Intergenic MER63A|DNA|hAT-Blackjack -82323 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 489.5-2 chr2 98174211 98174730 + 2.33333 NA intron (NM_001345864, intron 2 of 21) L1M4|LINE|L1 24937 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 281.334-5 chr13 71065034 71065230 + 2.33333 NA intron (NR_047699, intron 1 of 3) L1PA14|LINE|L1 49991 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 271.333-23 chr5 142671953 142672101 + 2.33333 NA intron (NM_001144935, intron 1 of 3) intron (NM_001144935, intron 1 of 3) 13653 NM_001354956 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 601.999 chr19 46513374 46513893 + 2.33333 NA intron (NM_001205281, intron 3 of 3) CpG -17766 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 755.5-2 chr6 97053815 97054296 + 2.33333 NA intron (NR_136579, intron 2 of 7) intron (NR_136579, intron 2 of 7) 43979 NM_001323264 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 430.666-3 chr6 55919064 55919374 + 2.33333 NA Intergenic Intergenic -43629 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 720.666-2 chr6 721950 722439 + 2.33333 NA Intergenic Intergenic -29053 NR_073064 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 566.167 chr1 23718347 23718920 + 2.33333 NA Intergenic L2a|LINE|L2 -24733 NM_003198 6924 Hs.15535 NM_003198 ENSG00000011007 ELOA SIII|SIII p110|TCEB3|TCEB3A elongin A protein-coding 331.167-15 chr6 61562734 61563007 + 2.33333 NA intron (NR_146870, intron 14 of 15) MER67C|LTR|ERV1 -11260 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 313.667-9 chr19 51339567 51339911 + 2.33333 NA intron (NM_001163922, intron 4 of 9) intron (NM_001163922, intron 4 of 9) 2385 NM_001163922 147645 Hs.293236 NM_001163922 ENSG00000186806 VSIG10L - V-set and immunoglobulin domain containing 10 like protein-coding 273.666-7 chr4 73189760 73189947 + 2.33333 NA intron (NM_032217, intron 1 of 33) L2a|LINE|L2 33204 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 540.667-3 chr13 25113116 25113587 + 2.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 17213 NM_030979 5042 Hs.458280 NM_030979 ENSG00000151846 PABPC3 PABP3|PABPL3|tPABP poly(A) binding protein cytoplasmic 3 protein-coding 397-9 chr2 225122652 225123098 + 2.33333 NA Intergenic Intergenic -80407 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 200.666-4 chr14 22691428 22691517 + 2.33333 NA Intergenic L2c|LINE|L2 -56628 NM_001348233 79549 NM_001348233 ENSG00000255804 OR6J1 OR6J1P|OR6J2 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding 320.5-2 chr1 228545510 228545782 + 2.33333 NA Intergenic HSAT4|Satellite|centr -33358 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 259-41 chr7 106771515 106771655 + 2.33333 NA Intergenic Intergenic -93697 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 730.832 chr8 96235322 96236071 + 2.33333 NA promoter-TSS (NM_006294) promoter-TSS (NM_006294) -62 NR_045639 7381 Hs.131255 NM_006294 ENSG00000156467 UQCRB MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC ubiquinol-cytochrome c reductase binding protein protein-coding 870.5 chr12 16359391 16360320 + 2.33333 NA intron (NM_001267598, intron 3 of 3) intron (NM_001267598, intron 3 of 3) 6438 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 289-10 chr14 76514638 76514857 + 2.33333 NA Intergenic Intergenic 143400 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 283-8 chr19 29718715 29718942 + 2.33333 NA Intergenic MSTD|LTR|ERVL-MaLR -3039 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 341.333-3 chr10 10881970 10882212 + 2.33333 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 70072 NR_024411 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 205-32 chrX 136954938 136955124 + 2.33333 NA Intergenic Intergenic -74251 NR_028477 27316 Hs.380118 NM_002139 ENSG00000147274 RBMX HNRNPG|HNRPG|MRXS11|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein X-linked protein-coding 414.833-2 chr1 235910493 235910854 + 2.33333 NA Intergenic Intergenic -26960 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 558.166 chr10 50421370 50421852 + 2.33333 NA intron (NM_147156, intron 6 of 10) MER54B|LTR|ERVL -173001 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 582.666 chr14 35818546 35818852 + 2.33333 NA Intergenic Intergenic -7639 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 298-5 chr12 124597072 124597389 + 2.33333 NA Intergenic MER20B|DNA|hAT-Charlie -29618 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 290.166 chr12 45818644 45818799 + 2.33333 NA intron (NM_152641, intron 5 of 20) intron (NM_152641, intron 5 of 20) 89012 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 748.999-2 chr20 23606725 23607167 + 2.33333 NA promoter-TSS (NM_001008693) promoter-TSS (NM_001008693) -973 NM_001008693 128822 Hs.698020 NM_001008693 ENSG00000173335 CST9 CLM|CTES7A cystatin 9 protein-coding 454.999-2 chr12 46402342 46402552 + 2.33333 NA intron (NR_125381, intron 2 of 2) intron (NR_125381, intron 2 of 2) 18340 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 759.833 chr3 102228843 102229684 + 2.33333 NA Intergenic Intergenic 65558 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 485.833 chr1 209850142 209850572 + 2.33333 NA intron (NM_014388, intron 11 of 11) intron (NM_014388, intron 11 of 11) 22385 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 657-2 chr2 219402863 219403788 + 2.33333 NA Intergenic MIR|SINE|MIR -3318 NM_001319116 23549 Hs.258551 NM_012100 ENSG00000123992 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 367.666-4 chr17 72512972 72513294 + 2.33333 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 79671 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 587.666-3 chr3 97792509 97793210 + 2.33333 NA intron (NR_136600, intron 8 of 9) intron (NR_136600, intron 8 of 9) 28101 NR_103511 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 373.666 chr14 66071631 66072150 + 2.33333 NA Intergenic L1ME3G|LINE|L1 -414481 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 627.5 chr12 50075120 50075611 + 2.33333 NA intron (NM_001256830, intron 1 of 9) intron (NM_001256830, intron 1 of 9) 1780 NM_001256830 41 Hs.274361 NM_001095 ENSG00000110881 ASIC1 ACCN2|ASIC|BNaC2 acid sensing ion channel subunit 1 protein-coding 303.166-8 chrX 155086691 155086863 + 2.33333 NA intron (NM_001018055, intron 5 of 10) intron (NM_001018055, intron 5 of 10) 15357 NM_001242640 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 374.5-2 chr15 34969690 34970017 + 2.33333 NA promoter-TSS (NM_014691) promoter-TSS (NM_014691) -111 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 304.5-20 chr8 81842587 81842895 + 2.33333 NA promoter-TSS (NM_022133) promoter-TSS (NM_022133) -455 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 711.334 chr20 37564020 37564830 + 2.33333 NA Intergenic CpG -36494 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 551.334 chr2 44577758 44578591 + 2.33333 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 216227 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 347.834-5 chr3 122868028 122868284 + 2.33333 NA intron (NM_032839, intron 7 of 8) intron (NM_032839, intron 7 of 8) -18357 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 306.334-10 chr3 50435858 50436295 + 2.33333 NA intron (NM_001291101, intron 2 of 37) MIR|SINE|MIR 67558 NM_001005505 9254 Hs.476273 NM_006030 ENSG00000007402 CACNA2D2 CACNA2D calcium voltage-gated channel auxiliary subunit alpha2delta 2 protein-coding 584.001 chr22 27112836 27113425 + 2.33333 NA Intergenic LTR16C|LTR|ERVL -52612 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 177.166-2 chr4 57426950 57427045 + 2.33333 NA non-coding (NR_125907, exon 2 of 6) non-coding (NR_125907, exon 2 of 6) 1125 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 452.333 chr7 50415573 50415991 + 2.33333 NA Intergenic Intergenic 34568 NM_001287492 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 858.166 chr9 113681990 113682835 + 2.33333 NA Intergenic Intergenic 88283 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 274.167 chr1 35726938 35727521 + 2.33333 NA intron (NM_001330490, intron 24 of 24) LTR16A|LTR|ERVL -8345 NM_152374 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 323.333-8 chr12 29019040 29019196 + 2.33333 NA Intergenic Intergenic -130160 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 445.333-5 chr17 57080696 57081175 + 2.33333 NA Intergenic MamRep605|LTR?|LTR? -4311 NM_003488 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 449.833 chr10 90593038 90593354 + 2.33333 NA Intergenic Intergenic -52391 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 1232 chr20 18631795 18632695 + 2.33333 NA 3' UTR (NM_001318043, exon 5 of 5) 3' UTR (NM_001318043, exon 5 of 5) 44191 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 404.833-5 chr3 155323041 155323500 + 2.33333 NA Intergenic Intergenic -29587 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 182.833-11 chr12 14619044 14619186 + 2.33333 NA intron (NM_004963, intron 24 of 26) intron (NM_004963, intron 24 of 26) -51232 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 220.333-9 chr12 62610392 62610569 + 2.33333 NA Intergenic Intergenic 6794 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 290.501-4 chr8 99149152 99149371 + 2.33333 NA intron (NM_017890, intron 14 of 61) intron (NM_017890, intron 14 of 61) 135995 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 473.666 chr6 68196885 68197113 + 2.33333 NA Intergenic L1PA16|LINE|L1 132900 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 617.167-2 chr22 40525210 40525829 + 2.33333 NA intron (NR_109965, intron 3 of 3) AluSg7|SINE|Alu 3719 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 501.333 chr12 95117047 95117315 + 2.33333 NA intron (NM_018351, intron 8 of 20) intron (NM_018351, intron 8 of 20) -43563 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 390.333-7 chr5 95755484 95755692 + 2.33333 NA exon (NM_014899, exon 6 of 12) exon (NM_014899, exon 6 of 12) -23486 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 194.833-23 chr5 159975551 159975692 + 2.33333 NA Intergenic Intergenic -33479 NM_001282500 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 451.333-4 chr12 39767449 39767642 + 2.33333 NA intron (NM_052885, intron 7 of 9) Tigger1|DNA|TcMar-Tigger 141362 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 1219-3 chr2 113137585 113138974 + 2.33333 NA Intergenic Intergenic 10681 NM_173842 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 1045.17 chr2 33372878 33373890 + 2.33333 NA intron (NM_206943, intron 31 of 33) intron (NM_206943, intron 31 of 33) -45132 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 391.167-6 chr19 9136089 9136734 + 2.33333 NA Intergenic AluSg|SINE|Alu -3986 NM_020933 57693 Hs.465829 NM_020933 ENSG00000130803 ZNF317 - zinc finger protein 317 protein-coding 739.334-2 chr9 34591671 34592289 + 2.33333 NA Intergenic CpG-28203 -1840 NM_001207011 1271 Hs.129966 NM_001842 ENSG00000122756 CNTFR - ciliary neurotrophic factor receptor protein-coding 292.833-10 chr9 75238236 75238591 + 2.33333 NA Intergenic HERVL18-int|LTR|ERVL 149899 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 931.332 chr15 52735608 52736203 + 2.33333 NA Intergenic L1MC4a|LINE|L1 44979 NR_073510 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 295.333-9 chr17 7177528 7177851 + 2.33333 NA intron (NM_001671, intron 2 of 8) intron (NM_001671, intron 2 of 8) 1681 NM_001671 432 Hs.12056 NM_001671 ENSG00000141505 ASGR1 ASGPR|ASGPR1|CLEC4H1|HL-1 asialoglycoprotein receptor 1 protein-coding 618.667 chr14 53071338 53071800 + 2.33333 NA intron (NM_030637, intron 6 of 11) intron (NM_030637, intron 6 of 11) 81754 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 323-22 chr6 133310253 133310425 + 2.33333 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 68840 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 599.001-2 chr16 57299460 57299884 + 2.33333 NA Intergenic MER113|DNA|hAT-Charlie -15000 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 560.5 chr9 87367172 87367546 + 2.33333 NA Intergenic L1ME1|LINE|L1 -129869 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 228.666-8 chr4 121726789 121727140 + 2.33333 NA Intergenic L2c|LINE|L2 -29984 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 408.166-3 chr14 99899822 99900050 + 2.33333 NA intron (NM_004434, intron 8 of 21) MIR1_Amn|SINE|MIR -71486 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 653 chr2 103958726 103959787 + 2.33333 NA Intergenic Intergenic 449076 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 358.333-4 chr2 54993905 54994078 + 2.33333 NA intron (NM_153828, intron 1 of 6) intron (NM_153828, intron 1 of 6) 16281 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 570.666 chr10 29445387 29446004 + 2.33333 NA intron (NR_110927, intron 2 of 2) intron (NR_110927, intron 2 of 2) 35452 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 270.333-5 chr13 101127857 101128092 + 2.33333 NA intron (NM_001350749, intron 17 of 43) intron (NM_001350749, intron 17 of 43) -183610 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 455.333 chr11 128956450 128956893 + 2.33333 NA Intergenic Intergenic -13272 NM_001251964 63970 Hs.160953 NM_022112 ENSG00000120471 TP53AIP1 P53AIP1 tumor protein p53 regulated apoptosis inducing protein 1 protein-coding 575.333-2 chr6 128807326 128807770 + 2.33333 NA Intergenic Intergenic -75590 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 1183.17 chr11 23539546 23540583 + 2.33333 NA Intergenic L1PB4|LINE|L1 -120874 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 353-9 chr2 70080610 70080814 + 2.33333 NA intron (NR_033872, intron 4 of 10) intron (NR_033872, intron 4 of 10) 6303 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 365.666-3 chr2 122565233 122565465 + 2.33333 NA Intergenic Intergenic 508132 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 411.667-2 chr13 106870917 106871283 + 2.33333 NA Intergenic Intergenic 217220 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 338.166 chr14 59824316 59824526 + 2.33333 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 46355 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 221.667 chr1 39482306 39482489 + 2.33333 NA intron (NM_012090, intron 91 of 92) intron (NM_012090, intron 91 of 92) -9239 NM_181809 353500 Hs.472497 NM_181809 ENSG00000183682 BMP8A - bone morphogenetic protein 8a protein-coding 611.333 chr11 36565512 36566073 + 2.33333 NA Intergenic Intergenic -2221 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 364.5-6 chr2 43356852 43357224 + 2.33333 NA intron (NM_001083953, intron 29 of 37) MER119|DNA|hAT-Charlie 129827 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 366.834-2 chr1 205659030 205659326 + 2.33333 NA 3' UTR (NM_033102, exon 5 of 5) 3' UTR (NM_033102, exon 5 of 5) 21331 NM_033102 85414 Hs.278695 NM_033102 ENSG00000158715 SLC45A3 IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST solute carrier family 45 member 3 protein-coding 443.667-5 chr17 28170031 28170431 + 2.33333 NA intron (NM_016231, intron 6 of 10) L2a|LINE|L2 -56332 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 581.833-2 chr3 58177602 58177936 + 2.33333 NA Intergenic CpG -7134 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 363.333 chr10 5095549 5095857 + 2.33333 NA intron (NM_003739, intron 1 of 8) intron (NM_003739, intron 1 of 8) 1289 NM_003739 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 914.833-2 chr7 12524554 12525217 + 2.33333 NA intron (NR_136263, intron 1 of 3) (AATA)n|Simple_repeat|Simple_repeat 20488 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 458.166-2 chr2 167331775 167332127 + 2.33333 NA Intergenic L1MA4A|LINE|L1 144579 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 242.666-8 chr15 89474083 89474211 + 2.33333 NA intron (NM_001321041, intron 9 of 10) L1ME4c|LINE|L1 22436 NM_001321041 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 246-28 chr6 13625004 13625282 + 2.33333 NA intron (NM_005493, intron 13 of 13) intron (NM_005493, intron 13 of 13) 9808 NM_016167 51406 Hs.306242 NM_016167 ENSG00000225921 NOL7 C6orf90|PQBP3|RARG-1|dJ223E5.2 nucleolar protein 7 protein-coding 303-10 chr18 69693074 69693281 + 2.33333 NA intron (NM_152721, intron 4 of 7) intron (NM_152721, intron 4 of 7) 223246 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 576.334-2 chr8 125191770 125192399 + 2.33333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 100224 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 320-5 chr11 126072173 126072402 + 2.33333 NA Intergenic Intergenic -8995 NM_001243597 50937 Hs.38034 NM_016952 ENSG00000064309 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 620.833-3 chr3 128584630 128585053 + 2.33333 NA Intergenic Intergenic -8755 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 642.834-2 chr12 120291485 120292181 + 2.33333 NA promoter-TSS (NR_003137) promoter-TSS (NR_003137) 70 NR_003137 26834 NR_003137 ENSG00000202538 RNU4-2 RNU4-1B|RNU4B1|RNU4C|U4A|U4b|U4c RNA, U4 small nuclear 2 snRNA 1004.83 chr1 89598881 89599826 + 2.33333 NA Intergenic Intergenic 33541 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 LRRC8C-DT - LRRC8C divergent transcript ncRNA 540.5-2 chr7 13524877 13525490 + 2.33333 NA Intergenic Intergenic 461331 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 661.667-3 chr2 170361091 170361952 + 2.33333 NA intron (NM_001083615, intron 8 of 33) intron (NM_001083615, intron 8 of 33) -10578 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 232.834-4 chr12 42334258 42334495 + 2.33333 NA intron (NM_201440, intron 2 of 9) intron (NM_201440, intron 2 of 9) 2578 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 636.166 chr5 149834026 149834869 + 2.33333 NA intron (NM_001172698, intron 4 of 10) intron (NM_001172698, intron 4 of 10) 62507 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 305.667-7 chr18 9588184 9588397 + 2.33333 NA intron (NR_052003, intron 4 of 19) intron (NR_052003, intron 4 of 19) 26269 NR_052003 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 1019.5 chr1 10494380 10495282 + 2.33333 NA intron (NM_004565, intron 1 of 8) intron (NM_004565, intron 1 of 8) 19881 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 713.167 chr13 46550944 46551709 + 2.33333 NA Intergenic Intergenic -1844 NM_015116 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 377-7 chr20 43409459 43409729 + 2.33333 NA Intergenic L1M3f|LINE|L1 -48302 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 224.166-6 chr9 35423638 35423742 + 2.33333 NA intron (NR_003582, intron 2 of 10) intron (NR_003582, intron 2 of 10) 16935 NR_003582 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 620.334-2 chr9 38007703 38008377 + 2.33333 NA intron (NM_003028, intron 2 of 5) intron (NM_003028, intron 2 of 5) 61187 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 288.333-10 chr19 13575129 13575393 + 2.33333 NA Intergenic Intergenic -68782 NM_001174080 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 551.666-2 chr15 84912246 84912614 + 2.33333 NA intron (NM_001287761, intron 8 of 14) intron (NM_001287761, intron 8 of 14) 27768 NM_001321722 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 267-16 chr14 96340563 96340725 + 2.33333 NA intron (NM_018036, intron 6 of 41) AluJo|SINE|Alu 22697 NM_018036 55102 Hs.168241 NM_018036 ENSG00000066739 ATG2B C14orf103 autophagy related 2B protein-coding 541.333 chr1 188653812 188654103 + 2.33333 NA Intergenic Intergenic 1210329 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 573.501 chr17 35533294 35533899 + 2.33333 NA intron (NM_001363830, intron 1 of 4) L2b|LINE|L2 4265 NM_001363830 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 279-7 chr11 126338402 126338674 + 2.33333 NA intron (NM_014026, intron 4 of 5) intron (NM_014026, intron 4 of 5) 17049 NR_033839 399972 Hs.585206 NR_033839 GSEC DCPS-AS1|ST3GAL4-AS1 G-quadruplex forming sequence containing lncRNA ncRNA 233-28 chr6 69703716 69703849 + 2.33333 NA intron (NM_001367272, intron 9 of 15) L1MC4|LINE|L1 92684 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 385.666-7 chrX 129925618 129925804 + 2.33333 NA intron (NM_001166221, intron 11 of 13) L3|LINE|CR1 19547 NM_006649 10813 Hs.458598 NM_006649 ENSG00000156697 UTP14A NYCO16|SDCCAG16|Utp14|dJ537K23.3 UTP14A small subunit processome component protein-coding 400-9 chr5 97165045 97165291 + 2.33333 NA intron (NM_018343, intron 8 of 9) intron (NM_018343, intron 8 of 9) 18079 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 270.666-9 chr2 241246767 241246963 + 2.33333 NA exon (NM_001320965, exon 16 of 28) exon (NM_001320965, exon 16 of 28) 25100 NM_001320966 3069 Hs.471851 NM_005336 ENSG00000115677 HDLBP HBP|PRO2900|VGL high density lipoprotein binding protein protein-coding 395.666-5 chr8 130494975 130495251 + 2.33333 NA Intergenic L1ME4b|LINE|L1 -51439 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 275.667-24 chr7 2873709 2873887 + 2.33333 NA Intergenic Intergenic -29490 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 655.334-3 chr7 27165088 27165616 + 2.33333 NA exon (NM_152739, exon 1 of 2) exon (NM_152739, exon 1 of 2) 185 NM_152739 3205 Hs.659350 NM_152739 ENSG00000078399 HOXA9 ABD-B|HOX1|HOX1.7|HOX1G homeobox A9 protein-coding 383.333-4 chr10 59234020 59234473 + 2.33333 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 56779 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 548.333 chr11 13463359 13463994 + 2.33333 NA promoter-TSS (NM_001297741) promoter-TSS (NM_001297741) -379 NM_001297741 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 710.999 chr3 179928480 179929223 + 2.33333 NA intron (NM_001349396, intron 1 of 13) intron (NM_001349396, intron 1 of 13) 29314 NR_110061 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 446.333 chr5 140073176 140073598 + 2.33333 NA Intergenic Intergenic -30088 NM_013982 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 443.5-7 chr4 83256893 83257358 + 2.33333 NA Intergenic L2a|LINE|L2 27670 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 262.166-7 chr5 29546304 29546666 + 2.33333 NA Intergenic Intergenic -150509 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 301.833-2 chr2 63693211 63693431 + 2.33333 NA Intergenic Intergenic 104170 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 541.666-2 chr7 104270183 104270524 + 2.33333 NA Intergenic Intergenic -58303 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 295.333-14 chr22 19281421 19281559 + 2.33333 NA intron (NM_007098, intron 1 of 32) L1MC5|LINE|L1 10229 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 358.833-3 chr16 7462418 7462621 + 2.33333 NA intron (NM_145893, intron 1 of 13) MLT1E2|LTR|ERVL-MaLR 129674 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 446.834-3 chr3 88191192 88191499 + 2.33333 NA Intergenic MER4A1|LTR|ERV1 41386 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 467.833-5 chr4 173301724 173302016 + 2.33333 NA intron (NM_017423, intron 6 of 11) intron (NM_017423, intron 6 of 11) 31899 NM_001130689 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 386.666 chr10 20856931 20857302 + 2.33333 NA intron (NM_006393, intron 9 of 27) AluSx1|SINE|Alu 40486 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 341.333-7 chr2 85298531 85299008 + 2.33333 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 29220 NM_001368095 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 857.834 chr13 95191610 95192346 + 2.33333 NA intron (NM_001105515, intron 9 of 20) intron (NM_001105515, intron 9 of 20) -18366 NR_145733 109616987 NR_145733 SNORD13G - small nucleolar RNA, C/D box 13G snoRNA 165-28 chr2 64453282 64453405 + 2.33333 NA promoter-TSS (NM_014181) promoter-TSS (NM_014181) -819 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 264.166-4 chr8 26054210 26054432 + 2.33333 NA Intergenic AluSz6|SINE|Alu -8908 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 333.667-5 chr2 170397018 170397200 + 2.33333 NA intron (NM_001083615, intron 16 of 33) intron (NM_001083615, intron 16 of 33) -46166 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 529.333-4 chr17 79905946 79906384 + 2.33333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -13192 NR_110851 101928738 Hs.399280 NR_110851 ENSG00000262188 LINC01978 - long intergenic non-protein coding RNA 1978 ncRNA 679.667-5 chr6 116010507 116010975 + 2.33333 NA intron (NM_002031, intron 1 of 7) MIRb|SINE|MIR -27990 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 387.166-5 chrX 104565701 104565954 + 2.33333 NA promoter-TSS (NM_017416) promoter-TSS (NM_017416) -372 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 507.166 chr1 46340650 46341134 + 2.33333 NA promoter-TSS (NM_001256128) promoter-TSS (NM_001256128) -286 NM_001256128 387338 Hs.163424 NM_199044 ENSG00000117481 NSUN4 SHTAP NOP2/Sun RNA methyltransferase 4 protein-coding 394.333-3 chr11 92554996 92555341 + 2.33333 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 203072 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 383.333-11 chr7 100177460 100177915 + 2.33333 NA promoter-TSS (NM_152742) promoter-TSS (NM_152742) -37 NM_001282716 10734 Hs.592283 NM_012447 ENSG00000066923 STAG3 - stromal antigen 3 protein-coding 516.666-2 chr9 100598867 100599173 + 2.33333 NA Intergenic CpG 20941 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 389-8 chr18 63719855 63720119 + 2.33333 NA intron (NM_001370475, intron 5 of 7) intron (NM_001370475, intron 5 of 7) 17027 NM_001370475 89778 Hs.350958 NM_080475 ENSG00000206072 SERPINB11 EPIPIN|SERPIN11 serpin family B member 11 (gene/pseudogene) protein-coding 390.333 chr1 41981379 41981658 + 2.33333 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) 54416 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 521.166-3 chr6 163416872 163417209 + 2.33333 NA intron (NM_206853, intron 1 of 6) intron (NM_206853, intron 1 of 6) 2322 NM_006775 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 541.833-4 chr19 55088565 55089159 + 2.33333 NA TTS (NM_133180).6 TTS (NM_133180).6 8470 NM_017729 54869 Hs.438862 NM_017729 ENSG00000131037 EPS8L1 DRC3|EPS8R1|PP10566 EPS8 like 1 protein-coding 301.666-2 chr1 158332909 158333146 + 2.33333 NA Intergenic Intergenic -1496 NM_001764 910 Hs.1310 NM_001764 ENSG00000158485 CD1B CD1|CD1A|R1 CD1b molecule protein-coding 909 chr8 142782081 142782935 + 2.33333 NA Intergenic Intergenic 4031 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 family member D protein-coding 1101.17-2 chr4 38860498 38861453 + 2.33333 NA Intergenic Intergenic -4158 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 507.666-2 chr4 90953140 90953456 + 2.33333 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 718267 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 343.333-3 chr11 85166846 85167131 + 2.33333 NA intron (NM_001142699, intron 4 of 27) intron (NM_001142699, intron 4 of 27) -243567 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 708.499 chr1 155989172 155989997 + 2.33333 NA Intergenic Intergenic -10024 NM_001350112 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|NEDMHM|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding 547.5 chr16 20849781 20850086 + 2.33333 NA TTS (NM_001199053) TTS (NM_001199053) 43406 NM_001199053 81691 Hs.177926 NM_030941 ENSG00000005189 REXO5 NEF-sp RNA exonuclease 5 protein-coding 286.667-10 chr17 43520615 43520902 + 2.33333 NA exon (NM_001302623, exon 20 of 23) exon (NM_001302623, exon 20 of 23) 9677 NM_001261439 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 334.833-2 chr1 90567350 90567528 + 2.33333 NA Intergenic Intergenic -90311 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 419.666-2 chr12 21891215 21891397 + 2.33333 NA intron (NM_005691, intron 12 of 37) intron (NM_005691, intron 12 of 37) 45388 NM_020297 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 535.166 chr1 201764052 201764960 + 2.33333 NA intron (NM_001167738, intron 1 of 26) MLT1B|LTR|ERVL-MaLR 24606 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 366-5 chr14 74879884 74880152 + 2.33333 NA Intergenic Intergenic -1898 NM_001244883 1743 Hs.525459 NM_001933 ENSG00000119689 DLST DLTS dihydrolipoamide S-succinyltransferase protein-coding 402.5-7 chr4 107029560 107030087 + 2.33333 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 6490 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 682.834 chr5 140874213 140875175 + 2.33333 NA promoter-TSS (NM_031864) promoter-TSS (NM_031864) -614 NM_031864 56137 Hs.199343 NM_018903 ENSG00000251664 PCDHA12 PCDH-ALPHA12 protocadherin alpha 12 protein-coding 415-5 chr2 62688573 62688847 + 2.33333 NA intron (NM_001142615, intron 1 of 22) L1MA5A|LINE|L1 14832 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 315.667-19 chr9 36728745 36729311 + 2.33333 NA Intergenic Intergenic 94571 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 341-8 chr6 98501917 98502106 + 2.33333 NA Intergenic Intergenic 329689 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 684.833-4 chr7 27210457 27211044 + 2.33333 NA Intergenic Intergenic 10329 NR_037843 100316868 Hs.199486 NR_037843 HOTTIP HOXA-AS6|HOXA13-AS1|NCRNA00213 HOXA distal transcript antisense RNA ncRNA 673.334-2 chr16 66270358 66271249 + 2.33333 NA Intergenic Intergenic -95888 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 365.166-2 chr12 54284070 54284251 + 2.33333 NA intron (NR_135167, intron 8 of 10) intron (NR_135167, intron 8 of 10) 3434 NM_031157 3178 Hs.546261 NM_002136 ENSG00000135486 HNRNPA1 ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 heterogeneous nuclear ribonucleoprotein A1 protein-coding 403.834-4 chr2 164497585 164498238 + 2.33333 NA intron (NM_004490, intron 9 of 13) intron (NM_004490, intron 9 of 13) 70584 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 534.333-2 chr8 19754804 19755097 + 2.33333 NA intron (NM_001354488, intron 1 of 9) intron (NM_001354488, intron 1 of 9) 2133 NM_001354490 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 821.666 chr1 178767978 178768757 + 2.33333 NA intron (NM_152663, intron 1 of 19) L1PA15-16|LINE|L1 43123 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 647.666 chr3 108201588 108201952 + 2.33333 NA intron (NM_018010, intron 5 of 10) intron (NM_018010, intron 5 of 10) 20654 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 381.833-6 chr7 9125520 9125876 + 2.33333 NA Intergenic Intergenic -508572 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 450.666-9 chr8 113869219 113869570 + 2.33333 NA Intergenic L1MEg|LINE|L1 -432455 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 812.001 chr13 19956694 19957424 + 2.33333 NA promoter-TSS (NM_001353163) promoter-TSS (NM_001353163) -347 NM_001353159 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 324.833-6 chr4 53584962 53585266 + 2.33333 NA intron (NM_001126328, intron 1 of 10) L3|LINE|CR1 6372 NM_001126328 84708 Hs.518760 NM_032622 ENSG00000072201 LNX1 LNX|MPDZ|PDZRN2 ligand of numb-protein X 1 protein-coding 474.501-2 chr2 194867178 194867740 + 2.33333 NA Intergenic Intergenic 136864 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 650 chr16 56318285 56318941 + 2.33333 NA intron (NM_138736, intron 3 of 7) intron (NM_138736, intron 3 of 7) 73093 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 389.999-3 chr9 81160042 81160230 + 2.33333 NA Intergenic Intergenic 529399 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 527.333-5 chr7 63015815 63016332 + 2.33333 NA Intergenic AluSx1|SINE|Alu 287983 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 957.166 chr1 192805707 192807142 + 2.33333 NA Intergenic Intergenic -2615 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 779.5 chr12 54359145 54359821 + 2.33333 NA intron (NR_120487, intron 1 of 3) intron (NR_120487, intron 1 of 3) 5003 NM_020370 53831 Hs.306199 NM_020370 ENSG00000139572 GPR84 EX33|GPCR4 G protein-coupled receptor 84 protein-coding 983.667 chr14 74945075 74946015 + 2.33333 NA intron (NM_001207012, intron 5 of 5) intron (NM_001207012, intron 5 of 5) 10219 NM_001293643 5228 Hs.252820 NM_002632 ENSG00000119630 PGF D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760 placental growth factor protein-coding 567.333-4 chr11 2420635 2420977 + 2.33333 NA intron (NM_014555, intron 3 of 23) intron (NM_014555, intron 3 of 23) 2239 NM_014555 29850 Hs.272287 NM_014555 ENSG00000070985 TRPM5 LTRPC5|MTR1 transient receptor potential cation channel subfamily M member 5 protein-coding 677-2 chr11 64152777 64153815 + 2.33333 NA intron (NM_014067, intron 1 of 10) intron (NM_014067, intron 1 of 10) 12817 NM_014067 28992 Hs.602898 NM_014067 ENSG00000133315 MACROD1 LRP16 mono-ADP ribosylhydrolase 1 protein-coding 499.334-2 chr12 130869910 130870253 + 2.33333 NA Intergenic Intergenic -1913 NM_001300796 5901 Hs.10842 NM_006325 ENSG00000132341 RAN ARA24|Gsp1|TC4 RAN, member RAS oncogene family protein-coding 523.334-2 chr20 15236799 15237217 + 2.33333 NA intron (NM_001351663, intron 6 of 17) MER20B|DNA|hAT-Charlie 40168 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 420.333-2 chr22 37681779 37681983 + 2.33333 NA Intergenic Intergenic -4462 NM_024313 79159 Hs.632778 NM_024313 ENSG00000273899 NOL12 Nop25|dJ37E16.7 nucleolar protein 12 protein-coding 386.833-5 chr6 126176208 126176552 + 2.33333 NA Intergenic Intergenic -163409 NM_001012507 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 393-2 chr2 178403576 178403817 + 2.33333 NA TTS (NM_001201481) TTS (NM_001201481) -9963 NR_110205 101927027 Hs.715694 NR_110204 ENSG00000223960 CHROMR CHROME|PRKRA-AS1 cholesterol induced regulator of metabolism RNA ncRNA 272.166-6 chr7 8216477 8216844 + 2.33333 NA intron (NM_001350836, intron 7 of 14) L2c|LINE|L2 45392 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 674.333-3 chr3 8970777 8971206 + 2.33333 NA Intergenic L1MC5a|LINE|L1 -7519 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 619.499 chr3 170811925 170812419 + 2.33333 NA Intergenic Intergenic 58023 NR_135259 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 347.167-2 chr1 66818433 66818745 + 2.33333 NA intron (NM_024763, intron 16 of 16) MamRep1151|LTR?|LTR? -17330 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 323-24 chr8 116218216 116218566 + 2.33333 NA intron (NR_046215, intron 4 of 13) L2|LINE|L2 106668 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 855 chr2 191165041 191165689 + 2.33333 NA Intergenic Intergenic -13769 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 539.834-4 chr6 41683706 41683994 + 2.33333 NA TTS (NM_007162) TTS (NM_007162) 45382 NM_001300806 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 363.333-7 chr4 173506004 173506281 + 2.33333 NA intron (NM_001329597, intron 1 of 3) intron (NM_001329597, intron 1 of 3) 13096 NM_001329597 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 443.666-4 chr8 8270747 8270966 + 2.33333 NA Intergenic Intergenic 42286 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 333 chr1 73096117 73096353 + 2.33333 NA Intergenic L1ME2|LINE|L1 -209935 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 376.333-3 chr11 57803896 57804091 + 2.33333 NA intron (NM_001331, intron 8 of 18) intron (NM_001331, intron 8 of 18) 42191 NM_001085459 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 1160.5 chr18 72672180 72673006 + 2.33333 NA Intergenic Intergenic -128251 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 423.333 chr1 117403571 117403839 + 2.33333 NA intron (NM_006699, intron 2 of 12) L1M4|LINE|L1 36256 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 166-14 chr11 27486009 27486138 + 2.33333 NA Intergenic Intergenic -13283 NM_018490 55366 Hs.502176 NM_018490 ENSG00000205213 LGR4 BNMD17|GPR48 leucine rich repeat containing G protein-coupled receptor 4 protein-coding 235-34 chr8 87132595 87132720 + 2.33333 NA intron (NM_173538, intron 4 of 10) (AT)n|Simple_repeat|Simple_repeat 266242 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 314.667 chr1 150922443 150922865 + 2.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR -3609 NM_001366417 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated histone lysine methyltransferase 1 protein-coding 194.167-17 chr17 48194363 48194492 + 2.33333 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -37916 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 256.5-13 chr17 10543498 10543719 + 2.33333 NA intron (NM_001100112, intron 8 of 39) intron (NM_001100112, intron 8 of 39) 6015 NM_001100112 4620 Hs.667534 NM_017534 ENSG00000125414 MYH2 IBM3|MYH2A|MYHSA2|MYHas8|MYPOP|MyHC-2A|MyHC-IIa myosin heavy chain 2 protein-coding 287.334 chr12 101831005 101831181 + 2.33333 NA promoter-TSS (NM_024312) promoter-TSS (NM_024312) -134 NM_024312 79158 Hs.46850 NM_024312 ENSG00000111670 GNPTAB GNPTA|ICD N-acetylglucosamine-1-phosphate transferase subunits alpha and beta protein-coding 446.834-2 chr2 71583542 71583835 + 2.33333 NA intron (NM_001130985, intron 30 of 54) intron (NM_001130985, intron 30 of 54) 116989 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 675.999 chr13 43085432 43085895 + 2.33333 NA intron (NM_013238, intron 4 of 5) intron (NM_013238, intron 4 of 5) -27502 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 398.833-5 chr2 50042163 50042507 + 2.33333 NA intron (NM_001330093, intron 21 of 22) THE1C|LTR|ERVL-MaLR -68132 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 426.167-9 chr4 149897729 149898342 + 2.33333 NA Intergenic Intergenic -82192 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 768.835 chr3 82132800 82133616 + 2.33333 NA intron (NR_147146, intron 1 of 8) BLACKJACK|DNA|hAT-Blackjack 147066 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 689.5-4 chr9 122991107 122991731 + 2.33333 NA intron (NM_012197, intron 6 of 25) intron (NM_012197, intron 6 of 25) -42224 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 377.334-5 chr6 55885976 55886642 + 2.33333 NA Intergenic Intergenic -10719 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 247.666-7 chr4 76526839 76526992 + 2.33333 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -46653 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 317.5-3 chr10 53055746 53056009 + 2.33333 NA Intergenic L1MCa|LINE|L1 -284177 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 473.5-2 chr17 78421614 78422791 + 2.33333 NA intron (NR_110602, intron 8 of 8) intron (NR_110602, intron 8 of 8) 43553 NM_024419 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 677.166 chr19 7943714 7944402 + 2.33333 NA promoter-TSS (NM_006351) promoter-TSS (NM_006351) -392 NM_006351 10469 Hs.465784 NM_006351 ENSG00000104980 TIMM44 TIM44 translocase of inner mitochondrial membrane 44 protein-coding 569.334 chr1 115717266 115717764 + 2.33333 NA intron (NM_001232, intron 8 of 10) LTR26|LTR|ERV1 51290 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 628.666 chr14 24307891 24308518 + 2.33333 NA 3' UTR (NM_001286367, exon 10 of 10) 3' UTR (NM_001286367, exon 10 of 10) -1936 NM_019839 56413 Hs.642693 NM_019839 ENSG00000213906 LTB4R2 BLT2|BLTR2|JULF2|KPG_004|LTB4-R 2|LTB4-R2|NOP9 leukotriene B4 receptor 2 protein-coding 476-5 chr3 179316116 179316427 + 2.33333 NA Intergenic Intergenic -6760 NM_001303426 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 436.833-7 chr22 22783023 22783357 + 2.33333 NA Intergenic Intergenic -39586 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 429.499 chr11 61385736 61386277 + 2.33333 NA Intergenic AluSz6|SINE|Alu -6354 NM_001173991 51259 Hs.26745 NM_016499 ENSG00000187049 TMEM216 HSPC244 transmembrane protein 216 protein-coding 360.333 chr1 89762874 89763533 + 2.33333 NA Intergenic CpG -57829 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 613.333-4 chr7 108366860 108367284 + 2.33333 NA intron (NR_163871, intron 2 of 29) intron (NR_163871, intron 2 of 29) -38546 NM_001371177 769.666-2 chr6 159104047 159104571 + 2.33333 NA Intergenic Intergenic -59157 NM_152133 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 278.333-14 chr2 9311408 9311653 + 2.33333 NA intron (NM_003887, intron 3 of 27) intron (NM_003887, intron 3 of 27) 104718 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 286.666-5 chr18 11039554 11039745 + 2.33333 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 109113 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 378-15 chr4 32121846 32122062 + 2.33333 NA intron (NR_125936, intron 1 of 2) LTR16E2|LTR|ERVL -99532 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 610.666-3 chr4 150866387 150866864 + 2.33333 NA intron (NM_001367550, intron 22 of 56) L1MD|LINE|L1 148642 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 561-3 chr3 632367 633012 + 2.33333 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 40584 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 385.166-3 chr20 53899446 53899766 + 2.33333 NA Intergenic LTR16A1|LTR|ERVL -23897 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 373.333-11 chr5 158784044 158784307 + 2.33333 NA intron (NM_001324107, intron 9 of 15) MIR|SINE|MIR 313781 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 528.166 chr14 57692639 57692908 + 2.33333 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) 172226 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 312.333-10 chr12 92785217 92785538 + 2.33333 NA intron (NM_003566, intron 22 of 28) intron (NM_003566, intron 22 of 28) 48888 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 296.666-4 chr17 2828381 2828626 + 2.33333 NA intron (NM_001330058, intron 2 of 24) L2a|LINE|L2 32065 NM_015085 23108 Hs.499659 NM_015085 ENSG00000132359 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 669.667-2 chr12 121060487 121061014 + 2.33333 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -21508 NM_198213 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 536.166 chr15 66504697 66505125 + 2.33333 NA promoter-TSS (NM_000968) promoter-TSS (NM_000968) -56 NM_000968 6124 Hs.186350 NM_000968 ENSG00000174444 RPL4 L4 ribosomal protein L4 protein-coding 215.333-48 chr9 115638496 115638665 + 2.33333 NA Intergenic Intergenic 105659 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 507.5-2 chr8 75563133 75563376 + 2.33333 NA intron (NM_001330561, intron 11 of 11) intron (NM_001330561, intron 11 of 11) 23286 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 326.333-3 chr14 103078259 103078746 + 2.33333 NA Intergenic Intergenic -5708 NM_001330236 107984640 NM_001330236 ENSG00000283071 LBHD2 - LBH domain containing 2 protein-coding 317.666-6 chr2 19900291 19900701 + 2.33333 NA intron (NM_001008237, intron 1 of 2) intron (NM_001008237, intron 1 of 2) 1487 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 426.666-2 chr18 66527582 66527905 + 2.33333 NA intron (NR_073130, intron 9 of 11) AluSx3|SINE|Alu 76347 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 1053.5 chr2 57497240 57498333 + 2.33333 NA Intergenic Intergenic -409865 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 528.5-2 chr10 88835399 88836245 + 2.33333 NA intron (NM_144590, intron 1 of 5) intron (NM_144590, intron 1 of 5) 16022 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 820.333 chr9 104743162 104744061 + 2.33333 NA Intergenic Intergenic -4072 NM_001329570 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 395.999-4 chr9 100381931 100382178 + 2.33333 NA Intergenic Intergenic -29112 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 309 chr1 35770824 35770989 + 2.33333 NA promoter-TSS (NM_022111) promoter-TSS (NM_022111) -928 NM_001330490 63967 Hs.175613 NM_022111 ENSG00000092853 CLSPN - claspin protein-coding 279.833-20 chr9 109345785 109346011 + 2.33333 NA Intergenic Intergenic -24934 NM_018424 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 536.999 chr8 86784045 86784386 + 2.33333 NA Intergenic Intergenic -40540 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 259.666 chr11 127346019 127346409 + 2.33333 NA Intergenic Intergenic 75144 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 294.001-2 chr14 51914944 51915194 + 2.33333 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 3502 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 355.333-7 chr5 90858301 90858537 + 2.33333 NA intron (NR_003149, intron 82 of 89) intron (NR_003149, intron 82 of 89) 299622 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 459.333-3 chr7 97104568 97104848 + 2.33333 NA Intergenic Intergenic -11885 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 759.499-3 chr3 45511001 45511759 + 2.33333 NA intron (NM_001368263, intron 14 of 20) L1ME3A|LINE|L1 -1835 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 332.833-5 chr11 11931381 11931672 + 2.33333 NA intron (NM_001282659, intron 14 of 27) MIRc|SINE|MIR 77113 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 284.667-10 chr3 108387320 108387540 + 2.33333 NA intron (NM_014981, intron 39 of 41) intron (NM_014981, intron 39 of 41) 75645 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 350.833-10 chr8 79167093 79167315 + 2.33333 NA Intergenic MIRc|SINE|MIR -164984 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 344.333-7 chr2 104189303 104189552 + 2.33333 NA Intergenic Intergenic 218905 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 889.166 chr3 149936580 149937165 + 2.33333 NA intron (NM_183383, intron 7 of 8) L1M1|LINE|L1 34023 NM_053024 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 949.999 chr22 22710293 22711358 + 2.33333 NA Intergenic Intergenic 64513 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 339.333-3 chr1 203475780 203475969 + 2.33333 NA promoter-TSS (NM_002725) promoter-TSS (NM_002725) 68 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 457.334-2 chr20 21503491 21503889 + 2.33333 NA Intergenic Intergenic 10374 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 490.999 chr17 27236840 27237112 + 2.33333 NA Intergenic Intergenic 57020 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 574.333 chr10 4656436 4657057 + 2.33333 NA intron (NR_015425, intron 1 of 2) intron (NR_015425, intron 1 of 2) 590 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 350-14 chr4 112529976 112530363 + 2.33333 NA intron (NR_161159, intron 2 of 3) AluY|SINE|Alu -13989 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 289.666 chr10 72402497 72402678 + 2.33333 NA intron (NM_001195519, intron 5 of 6) (A)n|Simple_repeat|Simple_repeat -47668 NM_001365081 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 367.001-4 chr14 45643011 45643298 + 2.33333 NA Intergenic Intergenic 72448 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 438.834-3 chr3 115986719 115987060 + 2.33333 NA intron (NM_001318915, intron 3 of 8) MLT1J2-int|LTR|ERVL-MaLR -81763 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 219 chr1 21490766 21490952 + 2.33333 NA Intergenic LTR28C|LTR|ERV1 -18125 NM_001369804 249 Hs.75431 NM_000478 ENSG00000162551 ALPL AP-TNAP|APTNAP|HOPS|TNALP|TNAP|TNSALP alkaline phosphatase, biomineralization associated protein-coding 225-10 chr17 5949455 5949574 + 2.33333 NA Intergenic L4_B_Mam|LINE|RTE-X -121100 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 436.666-3 chr16 60721727 60721922 + 2.33333 NA Intergenic MIRb|SINE|MIR 333942 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 375.666-2 chr2 186470582 186470884 + 2.33333 NA Intergenic Intergenic -15527 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 378.833-2 chr10 7417284 7417507 + 2.33333 NA Intergenic Intergenic -5909 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 376.833-4 chr17 59897167 59897390 + 2.33333 NA intron (NM_001272044, intron 2 of 15) intron (NM_001272044, intron 2 of 15) 4157 NR_161458 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 647-5 chr9 98974698 98975295 + 2.33333 NA intron (NM_001855, intron 2 of 41) intron (NM_001855, intron 2 of 41) 31089 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 460.833-3 chr19 5805791 5806373 + 2.33333 NA Intergenic Intergenic -14919 NM_001161619 56931 Hs.284297 NM_020175 ENSG00000141994 DUS3L DUS3 dihydrouridine synthase 3 like protein-coding 514.499 chr9 96219813 96220244 + 2.33333 NA Intergenic Intergenic -26435 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 184-44 chr6 136819525 136819692 + 2.33333 NA Intergenic Intergenic -2984 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 228-18 chr15 59689325 59689540 + 2.33333 NA promoter-TSS (NM_001368061) promoter-TSS (NM_001368061) -112 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 421.5-4 chr6 135506171 135506429 + 2.33333 NA intron (NR_152842, intron 2 of 5) intron (NR_152842, intron 2 of 5) 8499 NR_152843 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 561 chr14 43795783 43796235 + 2.33333 NA Intergenic Intergenic 711274 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 550.501 chr1 171188887 171189273 + 2.33333 NA intron (NM_001460, intron 2 of 8) intron (NM_001460, intron 2 of 8) 3780 NM_001460 2327 Hs.144912 NM_001460 ENSG00000094963 FMO2 FMO1B1 flavin containing dimethylaniline monoxygenase 2 protein-coding 462.334-2 chr13 100514951 100515395 + 2.33333 NA intron (NR_148027, intron 22 of 23) intron (NR_148027, intron 22 of 23) 18629 NM_033110 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 265.667 chr1 35882827 35883140 + 2.33333 NA promoter-TSS (NM_012199) promoter-TSS (NM_012199) -212 NM_001317122 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute RISC component 1 protein-coding 259-46 chrX 38753346 38753523 + 2.33333 NA Intergenic MER97a|DNA|hAT-Tip100 -47998 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 645.5 chr1 3424439 3425076 + 2.33333 NA intron (NM_022114, intron 12 of 16) intron (NM_022114, intron 12 of 16) -29908 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 382.166-4 chr7 18353029 18353434 + 2.33333 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 63139 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 271.333-26 chr7 99595471 99595639 + 2.33333 NA Intergenic SATR2|Satellite|Satellite -2712 NM_001195541 100289187 Hs.729333 NM_001195541 ENSG00000244219 TMEM225B GS1-259H13.2 transmembrane protein 225B protein-coding 330-13 chr2 49761586 49761852 + 2.33333 NA Intergenic Intergenic 212484 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 351.5-12 chr7 10891671 10891934 + 2.33333 NA Intergenic Intergenic 48351 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 723.666 chr6 52839687 52840112 + 2.33333 NA intron (NM_153699, intron 2 of 6) L2a|LINE|L2 6196 NM_153699 221357 Hs.646984 NM_153699 ENSG00000182793 GSTA5 - glutathione S-transferase alpha 5 protein-coding 539.332 chr2 11234678 11234940 + 2.33333 NA intron (NM_001321643, intron 5 of 32) intron (NM_001321643, intron 5 of 32) 79342 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 422.999 chr20 3115778 3115972 + 2.33333 NA intron (NM_001267584, intron 3 of 4) AluSx3|SINE|Alu 8964 NR_038395 100134015 Hs.129448 NR_038395 ENSG00000235958 UBOX5-AS1 - UBOX5 antisense RNA 1 ncRNA 328.667-9 chr2 211313077 211313253 + 2.33333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 695594 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 700.333 chr6 85015261 85016066 + 2.33333 NA Intergenic Intergenic -251065 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 426-11 chr4 5827660 5827953 + 2.33333 NA intron (NM_001014809, intron 12 of 13) intron (NM_001014809, intron 12 of 13) 60007 NM_001288662 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 489-2 chr12 127559918 127560313 + 2.33333 NA Intergenic Intergenic 76352 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 289-8 chr12 70816898 70817058 + 2.33333 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) -28058 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 480.001 chr12 9708328 9708695 + 2.33333 NA Intergenic HUERS-P2-int|LTR|ERV1 24788 NM_001267701 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 282-18 chr2 152741504 152741644 + 2.33333 NA intron (NR_146431, intron 3 of 3) intron (NR_146431, intron 3 of 3) 22937 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 383.666-3 chr15 61967727 61967903 + 2.33333 NA intron (NM_001018088, intron 28 of 81) intron (NM_001018088, intron 28 of 81) 92632 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 398.167 chr19 35549129 35549619 + 2.33333 NA TTS (NM_000704) TTS (NM_000704) -3345 NR_038396 100506469 Hs.661816 NR_038396 ENSG00000236144 TMEM147-AS1 - TMEM147 antisense RNA 1 ncRNA 808.334-2 chr6 119110670 119111385 + 2.33333 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) -32363 NM_024581 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 274.333-19 chr20 53158171 53158438 + 2.33333 NA intron (NM_173485, intron 1 of 2) L2a|LINE|L2 -26979 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 415.833-6 chr2 152627334 152627769 + 2.33333 NA intron (NM_052905, intron 17 of 25) intron (NM_052905, intron 17 of 25) 89910 NM_001365599 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 598-3 chr2 15656721 15657213 + 2.33333 NA Intergenic Intergenic -33815 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 426.333-6 chr8 136721946 136722370 + 2.33333 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 191360 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 674.5 chr18 37385660 37386267 + 2.33333 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) 80541 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 299.667-10 chr6 100518326 100518479 + 2.33333 NA intron (NM_006828, intron 37 of 41) intron (NM_006828, intron 37 of 41) -54727 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 177.667-44 chr9 112924978 112925292 + 2.33333 NA Intergenic L1MC5a|LINE|L1 -34259 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 279-17 chr2 55299440 55299635 + 2.33333 NA intron (NM_001254943, intron 29 of 33) intron (NM_001254943, intron 29 of 33) 17218 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 389.333-3 chr19 51108341 51108609 + 2.33333 NA promoter-TSS (NM_145232) promoter-TSS (NM_145232) -66 NM_145232 90353 Hs.148425 NM_145232 ENSG00000142544 CTU1 ATPBD3|NCS6 cytosolic thiouridylase subunit 1 protein-coding 475.999 chr5 80307718 80307966 + 2.33333 NA Intergenic Intergenic -7364 NR_004845 644936 Hs.627173 NR_004845 LOC644936 - actin beta pseudogene pseudo 255.333-22 chr5 125096238 125096369 + 2.33333 NA intron (NR_109882, intron 2 of 5) Tigger1|DNA|TcMar-Tigger 59472 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 207-3 chr1 83657331 83657468 + 2.33333 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 203147 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 527.666 chr19 51670466 51670895 + 2.33333 NA Intergenic Charlie1a|DNA|hAT-Charlie -18754 NM_001316994 147650 Hs.467174 NM_207324 ENSG00000182310 SPACA6 LET7EH|LINC00085|NCRNA00085|SPACA6P sperm acrosome associated 6 protein-coding 437.666-3 chr10 111006939 111007304 + 2.33333 NA intron (NM_007373, intron 5 of 8) intron (NM_007373, intron 5 of 8) 18195 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 294.666-9 chrX 103041465 103041637 + 2.33333 NA Intergenic L1PB4|LINE|L1 22620 NM_018476 55859 Hs.334370 NM_018476 ENSG00000133169 BEX1 BEX2|HBEX2|HGR74-h brain expressed X-linked 1 protein-coding 574.166 chr10 131310224 131310668 + 2.33333 NA intron (NM_174937, intron 1 of 11) intron (NM_174937, intron 1 of 11) 1275 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 380.333-2 chr11 19688263 19688448 + 2.33333 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -24482 NM_182964 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 186.333-9 chr12 47949542 47949677 + 2.33333 NA Intergenic Intergenic -13938 NM_001143841 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 204.833-6 chr11 58578240 58578420 + 2.33333 NA promoter-TSS (NR_024091) promoter-TSS (NR_024091) -91 NM_001143995 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 453.666-6 chr9 34329240 34329611 + 2.33333 NA promoter-TSS (NM_001244390) promoter-TSS (NM_001244390) -81 NM_001244390 318 Hs.493767 NM_001161 ENSG00000164978 NUDT2 APAH1 nudix hydrolase 2 protein-coding 262.166-10 chr9 28326511 28326750 + 2.33333 NA intron (NM_001354574, intron 4 of 5) L2a|LINE|L2 392675 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 858.5 chr3 190201714 190202412 + 2.33333 NA Intergenic Intergenic -79626 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 494.333-3 chr7 55063885 55064301 + 2.33333 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 45061 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 274.333-12 chr17 65668932 65669150 + 2.33333 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -107393 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 299.666-4 chr3 78479111 78479328 + 2.33333 NA Intergenic L2a|LINE|L2 -430256 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 413.001-2 chrX 105903287 105903579 + 2.33333 NA intron (NM_198465, intron 9 of 28) intron (NM_198465, intron 9 of 28) 80894 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 208.333-17 chr15 39438880 39439006 + 2.33333 NA Intergenic Intergenic -142136 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 335.667-16 chr7 95685950 95686385 + 2.33333 NA Intergenic Intergenic -86339 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 567-2 chr17 61833455 61833956 + 2.33333 NA intron (NM_032043, intron 6 of 19) intron (NM_032043, intron 6 of 19) 29854 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 298.333 chr1 61215852 61216103 + 2.33333 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 37541 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 288.167-13 chr17 45147943 45148198 + 2.33333 NA 5' UTR (NM_006460, exon 1 of 1) 5' UTR (NM_006460, exon 1 of 1) 753 NM_006460 10614 Hs.586945 NM_006460 ENSG00000186834 HEXIM1 CLP1|EDG1|HIS1|MAQ1 HEXIM P-TEFb complex subunit 1 protein-coding 305.999-5 chr3 150281684 150281869 + 2.33333 NA intron (NR_110186, intron 2 of 3) L1MA3|LINE|L1 41971 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 853.167-2 chr4 99462675 99463496 + 2.33333 NA Intergenic Intergenic -27575 NM_000673 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 238.166-6 chr6 89970587 89970883 + 2.33333 NA intron (NM_021813, intron 6 of 8) intron (NM_021813, intron 6 of 8) 76266 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 237.667-39 chr8 69648988 69649240 + 2.33333 NA intron (NR_132437, intron 16 of 16) intron (NR_132437, intron 16 of 16) 56214 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 415-10 chr8 89903807 89904136 + 2.33333 NA intron (NM_001126111, intron 1 of 5) intron (NM_001126111, intron 1 of 5) 1401 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 342.666-3 chr4 56435593 56435835 + 2.33333 NA promoter-TSS (NM_001079524) promoter-TSS (NM_001079524) -35 NM_006452 10606 Hs.518774 NM_006452 ENSG00000128050 PAICS ADE2|ADE2H1|AIRC|PAIS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase protein-coding 364.833-8 chr9 88818835 88819233 + 2.33333 NA Intergenic Intergenic -73129 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 358.333-11 chr8 26810054 26810302 + 2.33333 NA intron (NM_001322504, intron 1 of 1) AmnSINE1|SINE|5S-Deu-L2 55477 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 728.332 chr6 127069893 127070430 + 2.33333 NA Intergenic Intergenic -48510 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 810.499 chr5 154967081 154967853 + 2.33333 NA 3' UTR (NM_014180, exon 7 of 7) 3' UTR (NM_014180, exon 7 of 7) 26394 NM_014180 29093 Hs.483924 NM_014180 ENSG00000082515 MRPL22 HSPC158|L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 800.167-3 chr8 61243677 61244498 + 2.33333 NA Intergenic Tigger17c|DNA|TcMar-Tigger -43883 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 510.833-2 chr4 13656272 13656720 + 2.33333 NA intron (NR_121681, intron 1 of 3) intron (NR_121681, intron 1 of 3) 1317 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 483.499-2 chr2 20290996 20291513 + 2.33333 NA intron (NM_001282790, intron 8 of 18) intron (NM_001282790, intron 8 of 18) 36132 NM_001282790 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 563.834 chr19 16732735 16733099 + 2.33333 NA intron (NM_001007525, intron 3 of 18) intron (NM_001007525, intron 3 of 18) 1725 NM_001347994 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 375.5-5 chr3 94436517 94436794 + 2.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 373594 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 320-7 chr14 55430307 55430552 + 2.33333 NA intron (NM_199047, intron 4 of 6) AluJo|SINE|Alu 10116 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 270.666-12 chr5 84377836 84378034 + 2.33333 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 6932 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 1018 chr12 42482183 42483021 + 2.33333 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 1013 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 324.333-3 chr17 51761228 51761390 + 2.33333 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 325882 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 408-2 chr15 73897437 73897803 + 2.33333 NA Intergenic Intergenic 24056 NM_001286434 161514 Hs.124512 NM_153356 ENSG00000167139 TBC1D21 MgcRabGAP TBC1 domain family member 21 protein-coding 706.166-3 chr2 174157955 174159148 + 2.33333 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 89981 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 585.166 chr2 10678379 10678788 + 2.33333 NA intron (NR_048552, intron 2 of 19) intron (NR_048552, intron 2 of 19) 11392 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 565.334 chr2 173022014 173022487 + 2.33333 NA intron (NM_001282901, intron 17 of 24) intron (NM_001282901, intron 17 of 24) -53596 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 734.5-3 chr10 101067763 101068598 + 2.33333 NA TTS (NM_001319303) TTS (NM_001319303) 1881 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 659.334-3 chr7 55250182 55250702 + 2.33333 NA intron (NR_110426, intron 2 of 3) MLT1J|LTR|ERVL-MaLR 5193 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 510.667-6 chr7 138161454 138161974 + 2.33333 NA Intergenic Intergenic 37956 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 586.834 chr18 46148509 46149174 + 2.33333 NA Intergenic Intergenic -25181 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 620.5-3 chr6 52598121 52598906 + 2.33333 NA Intergenic Intergenic 21215 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 399-5 chr16 58129157 58129760 + 2.33333 NA promoter-TSS (NR_136632) promoter-TSS (NR_136632) -33 NR_136632 29105 Hs.532755 NM_013242 ENSG00000070761 CFAP20 BUG22|C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 478.333-6 chr9 36694256 36694500 + 2.33333 NA Intergenic L2c|LINE|L2 121483 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 738.666 chr9 13427317 13428122 + 2.33333 NA intron (NR_033863, intron 1 of 2) intron (NR_033863, intron 1 of 2) 3610 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 449.334 chr13 28636887 28637196 + 2.33333 NA Intergenic Intergenic -22089 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 473-2 chr18 2007265 2007515 + 2.33333 NA Intergenic Intergenic 564115 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 560.667-5 chr3 26712210 26713311 + 2.33333 NA Intergenic Intergenic 18203 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 380.501 chr16 17731068 17731406 + 2.33333 NA Intergenic L1ME4a|LINE|L1 -260277 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 327.666-2 chr2 110157274 110157447 + 2.33333 NA intron (NM_207181, intron 11 of 19) intron (NM_207181, intron 11 of 19) -40794 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 181.5-4 chr1 184093064 184093479 + 2.33333 NA intron (NM_001363643, intron 3 of 3) intron (NM_001363643, intron 3 of 3) 41541 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 229.333-35 chr7 106783773 106783992 + 2.33333 NA Intergenic Charlie2b|DNA|hAT-Charlie -81400 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 294.666-3 chr12 52442806 52443054 + 2.33333 NA Intergenic Intergenic -8559 NM_004693 9119 Hs.697046 NM_004693 ENSG00000170454 KRT75 K6HF|KB18|PFB keratin 75 protein-coding 480-2 chr1 64675698 64676226 + 2.33333 NA exon (NM_001293274, exon 20 of 26) exon (NM_001293274, exon 20 of 26) -69011 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 339-15 chr7 49068462 49068663 + 2.33333 NA Intergenic L1MA8|LINE|L1 144015 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 987.499 chr2 44167877 44168705 + 2.33333 NA promoter-TSS (NM_002706) promoter-TSS (NM_002706) -512 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 397-7 chr2 115750415 115750639 + 2.33333 NA intron (NM_001321912, intron 11 of 25) intron (NM_001321912, intron 11 of 25) 406712 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 612.834 chr2 42436606 42437131 + 2.33333 NA Intergenic Intergenic 57114 NM_133329 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 522.333 chr10 116288123 116288428 + 2.33333 NA Intergenic Intergenic -14630 NM_001145453 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 486.333 chr10 80170464 80170705 + 2.33333 NA intron (NM_145869, intron 5 of 16) MIR3|SINE|MIR 33907 NM_001278408 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ALS23|ANX11|CAP-50|CAP50 annexin A11 protein-coding 389.666-2 chr12 39692014 39692443 + 2.33333 NA TTS (NM_001319247) TTS (NM_001319247) 66045 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 1091 chr16 10736906 10737976 + 2.33333 NA Intergenic AluSx|SINE|Alu -6345 NM_001278506 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 776.167-3 chr5 142880478 142881235 + 2.33333 NA intron (NR_146198, intron 4 of 22) intron (NR_146198, intron 4 of 22) -11946 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 529.501 chr1 71049797 71050587 + 2.33333 NA intron (NR_038420, intron 2 of 2) intron (NR_038420, intron 2 of 2) -2376 NM_198714 5733 Hs.445000 NM_000957 ENSG00000050628 PTGER3 EP3|EP3-I|EP3-II|EP3-III|EP3-IV|EP3-VI|EP3e|PGE2-R prostaglandin E receptor 3 protein-coding 178-5 chr10 13372006 13372110 + 2.33333 NA Intergenic Intergenic -23760 NM_001195602 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 326.834-9 chr3 189816367 189816584 + 2.33333 NA intron (NM_003722, intron 4 of 13) intron (NM_003722, intron 4 of 13) -13447 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 464.334-3 chr2 239013979 239014312 + 2.33333 NA Intergenic Intergenic 54769 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 326.666-7 chr3 126144590 126144840 + 2.33333 NA intron (NR_072979, intron 9 of 20) L1MB1|LINE|L1 -35350 NR_046383 100862662 Hs.633362 NR_046383 ENSG00000246022 ALDH1L1-AS2 - ALDH1L1 antisense RNA 2 ncRNA 435.166-4 chr20 6829216 6829496 + 2.33333 NA Intergenic Intergenic 61670 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 422.666-4 chr17 29965935 29966302 + 2.33333 NA intron (NR_026738, intron 3 of 15) L1MB4|LINE|L1 24484 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 426.5-6 chr2 237512859 237513241 + 2.33333 NA intron (NM_024101, intron 4 of 15) intron (NM_024101, intron 4 of 15) 2119 NR_106869 102465486 NR_106869 ENSG00000277842 MIR6811 hsa-mir-6811 microRNA 6811 ncRNA 932-2 chr6 39302966 39303909 + 2.33333 NA intron (NM_001135111, intron 4 of 5) intron (NM_001135111, intron 4 of 5) 10982 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 206-18 chr17 9965565 9965853 + 2.33333 NA intron (NM_201432, intron 4 of 13) intron (NM_201432, intron 4 of 13) -6214 NM_003644 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 1193.83-3 chrX 51395464 51396374 + 2.33333 NA Intergenic Intergenic -11029 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 565.667-2 chr3 190358175 190358567 + 2.33333 NA Intergenic Intergenic -29501 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 365.5-7 chr14 68140088 68140361 + 2.33333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 316632 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 1219-2 chr12 6851312 6852631 + 2.33333 NA promoter-TSS (NM_031299) promoter-TSS (NM_031299) -41 NM_001297602 83461 Hs.524216 NM_031299 ENSG00000111665 CDCA3 GRCC8|TOME-1 cell division cycle associated 3 protein-coding 357.667-2 chr1 102159321 102159622 + 2.33333 NA Intergenic L1ME2|LINE|L1 -162237 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 193.667-4 chr1 95789769 95789918 + 2.33333 NA Intergenic MIR|SINE|MIR -202225 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 346-4 chr20 39009698 39009944 + 2.33333 NA intron (NM_021931, intron 12 of 21) intron (NM_021931, intron 12 of 21) 47477 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 364.5-10 chr5 119070698 119070999 + 2.33333 NA promoter-TSS (NM_001290322) promoter-TSS (NM_001290322) 42 NR_134250 105379143 Hs.636285 NR_134249 ENSG00000249494 LOC105379143 - uncharacterized LOC105379143 ncRNA 767.333-3 chr8 48172282 48172761 + 2.33333 NA Intergenic Intergenic 164090 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 679.833 chr20 31260410 31261004 + 2.33333 NA Intergenic Intergenic 3043 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 373.333-3 chr10 71377028 71377632 + 2.33333 NA Intergenic CpG -19590 NM_001171930 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 506.334-3 chr2 43975668 43976042 + 2.33333 NA intron (NM_133259, intron 6 of 37) AluSx1|SINE|Alu 20134 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 361.333-4 chr16 27375104 27375348 + 2.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR -26948 NM_181079 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 379.833-3 chr8 89691555 89691864 + 2.33333 NA Intergenic MER58A|DNA|hAT-Charlie 66002 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 307.666-3 chr8 122317802 122317974 + 2.33333 NA Intergenic L1ME2|LINE|L1 250756 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 753.333-2 chr2 220686994 220687518 + 2.33333 NA Intergenic Intergenic -780691 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 518.999 chr6 72097620 72098050 + 2.33333 NA intron (NM_014989, intron 3 of 33) intron (NM_014989, intron 3 of 33) -115058 NM_001350419 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 278.333-6 chr11 30740687 30740897 + 2.33333 NA Intergenic MIRc|SINE|MIR -154439 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 344.333-5 chr18 7565384 7565577 + 2.33333 NA Intergenic L2a|LINE|L2 -1836 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 449.667-2 chr20 46410897 46411168 + 2.33333 NA intron (NR_146919, intron 1 of 3) intron (NR_146919, intron 1 of 3) -3981 NM_182764 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 406.333-10 chrX 13646184 13646473 + 2.33333 NA Intergenic Intergenic -6813 NM_001297563 170082 Hs.222855 NM_152634 ENSG00000176896 TCEANC - transcription elongation factor A N-terminal and central domain containing protein-coding 515-4 chr2 28824811 28825544 + 2.33333 NA intron (NM_001008779, intron 3 of 4) MIR|SINE|MIR 9180 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 415.166 chr1 229532185 229532435 + 2.33333 NA intron (NM_012089, intron 6 of 12) intron (NM_012089, intron 6 of 12) 23880 NR_110630 101927478 Hs.229275 NR_110630 LOC101927478 - uncharacterized LOC101927478 ncRNA 449.5 chr17 68757139 68757531 + 2.33333 NA Intergenic Intergenic 129181 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 683.666 chr19 2391090 2391731 + 2.33333 NA intron (NM_182973, intron 1 of 16) intron (NM_182973, intron 1 of 16) 1639 NM_182973 360200 Hs.465560 NM_182973 ENSG00000178297 TMPRSS9 - transmembrane serine protease 9 protein-coding 471.334 chr17 62152521 62152834 + 2.33333 NA Intergenic Intergenic -87399 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 400-2 chr11 10513991 10514417 + 2.33333 NA 3' UTR (NM_016422, exon 6 of 6) 3' UTR (NM_016422, exon 6 of 6) -5018 NM_001190702 100463486 NM_001190702 ENSG00000255823 MTRNR2L8 HN8 MT-RNR2 like 8 protein-coding 630.333 chr1 204503936 204504470 + 2.33333 NA Intergenic Intergenic -12176 NM_001204172 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 351.167-9 chr9 84697659 84697953 + 2.33333 NA intron (NM_001369550, intron 1 of 11) intron (NM_001369550, intron 1 of 11) -3799 NM_001369551 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 178.166-2 chr3 125046108 125046219 + 2.33333 NA intron (NM_020733, intron 1 of 16) MIRc|SINE|MIR 9834 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 402.667-17 chr6 53955868 53956543 + 2.33333 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 26223 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 858.168 chr3 192130531 192131059 + 2.33333 NA Intergenic L1MEf|LINE|L1 -107835 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 245.5-7 chr10 80378991 80379126 + 2.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 22277 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 576.833-2 chr8 143284603 143285098 + 2.33333 NA Intergenic Intergenic -3150 NR_120682 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long non-coding RNA ncRNA 548.167-3 chr16 10918499 10919361 + 2.33333 NA intron (NR_104444, intron 14 of 17) intron (NR_104444, intron 14 of 17) 23538 NM_014015 28955 Hs.592051 NM_014015 ENSG00000182108 DEXI MYLE Dexi homolog protein-coding 511.833-3 chr3 71710739 71711134 + 2.33333 NA intron (NM_173359, intron 2 of 7) intron (NM_173359, intron 2 of 7) 14466 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 724.667 chr20 50794412 50794929 + 2.33333 NA promoter-TSS (NM_198799) promoter-TSS (NM_198799) -224 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 565 chr1 91501302 91501716 + 2.33333 NA intron (NM_001134420, intron 1 of 11) intron (NM_001134420, intron 1 of 11) 401 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 289.333-13 chr16 74129848 74130087 + 2.33333 NA Intergenic MIRb|SINE|MIR 85554 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 416.334-3 chr3 158643849 158644171 + 2.33333 NA promoter-TSS (NM_001308166) promoter-TSS (NM_001308166) -518 NM_001308166 85476 Hs.518355 NM_024996 ENSG00000168827 GFM1 COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1 G elongation factor mitochondrial 1 protein-coding 362.167-3 chr10 70242459 70242931 + 2.33333 NA Intergenic AluSz|SINE|Alu -9266 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 397-2 chr12 94764371 94764664 + 2.33333 NA Intergenic Intergenic -69881 NR_030171 574449 NR_030171 ENSG00000283998 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 700.834 chr20 49964803 49965302 + 2.33333 NA Intergenic Intergenic -17928 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 754.333 chr1 67500381 67500891 + 2.33333 NA Intergenic Intergenic -70234 NM_001018067 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 339.666-2 chr10 17194534 17194690 + 2.33333 NA intron (NM_004412, intron 1 of 10) L1PA16|LINE|L1 7060 NM_001351219 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 436.334-2 chr14 69200992 69201317 + 2.33333 NA intron (NM_001193363, intron 1 of 8) Charlie5|DNA|hAT-Charlie 9388 NM_001193363 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 450.999-2 chr9 35935207 35935748 + 2.33333 NA Intergenic Tigger3a|DNA|TcMar-Tigger 22677 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 485-5 chr22 40509422 40510051 + 2.33333 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -12064 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 355.833-8 chr4 30455256 30455455 + 2.33333 NA Intergenic L2|LINE|L2 -265014 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 583.501 chr2 95533051 95533699 + 2.33333 NA Intergenic Intergenic -48644 NM_001164464 653192 Hs.723811 NM_001164464 ENSG00000144010 TRIM43B - tripartite motif containing 43B protein-coding 388.333-12 chr7 97200150 97200436 + 2.33333 NA Intergenic Intergenic 83700 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 407.334-2 chr14 50977552 50977877 + 2.33333 NA intron (NM_015163, intron 9 of 9) intron (NM_015163, intron 9 of 9) -33231 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 259.333-5 chr10 10524071 10524243 + 2.33333 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 61607 NM_001326318 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 835.667 chr2 74440011 74440979 + 2.33333 NA promoter-TSS (NM_001015056) promoter-TSS (NM_001015056) 88 NM_033046 6242 Hs.192854 NM_033046 ENSG00000114993 RTKN - rhotekin protein-coding 233.334-5 chr6 17213968 17214132 + 2.33333 NA Intergenic Intergenic -67311 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 470 chr11 62653104 62653892 + 2.33333 NA promoter-TSS (NM_030628) promoter-TSS (NM_030628) -196 NM_030628 80789 Hs.458390 NM_030628 ENSG00000185085 INTS5 INT5|KIAA1698 integrator complex subunit 5 protein-coding 455.499 chr3 134211741 134212055 + 2.33333 NA intron (NM_001005861, intron 2 of 14) intron (NM_001005861, intron 2 of 14) 38846 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 371.833-10 chrX 80282507 80282689 + 2.33333 NA intron (NR_110646, intron 5 of 5) intron (NR_110646, intron 5 of 5) 52720 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 583.5 chr5 168679387 168679879 + 2.33333 NA intron (NM_003062, intron 32 of 35) intron (NM_003062, intron 32 of 35) -27294 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 342.667-4 chr16 3946261 3946566 + 2.33333 NA Intergenic Intergenic 4031 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 641.333-7 chr9 76394622 76395036 + 2.33333 NA promoter-TSS (NM_018339) promoter-TSS (NM_018339) -403 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 246.667-12 chr19 49363458 49363778 + 2.33333 NA promoter-TSS (NM_001197302) promoter-TSS (NM_001197302) -259 NM_001197302 27120 Hs.515855 NM_014419 ENSG00000104901 DKKL1 CT34|SGY|SGY-1|SGY1 dickkopf like acrosomal protein 1 protein-coding 298.166-4 chr2 119492346 119492647 + 2.33333 NA intron (NM_002980, intron 2 of 12) intron (NM_002980, intron 2 of 12) 16042 NR_147847 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 289-12 chr16 24288893 24289090 + 2.33333 NA intron (NM_006539, intron 1 of 3) intron (NM_006539, intron 1 of 3) 33438 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 264.834-6 chr3 68490517 68490700 + 2.33333 NA intron (NM_001252216, intron 3 of 4) Charlie1|DNA|hAT-Charlie -10029 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 314.333-2 chr10 96024670 96024949 + 2.33333 NA intron (NR_134321, intron 2 of 2) intron (NR_134321, intron 2 of 2) -18774 NM_001134376 54619 Hs.596479 NM_019084 ENSG00000107443 CCNJ bA690P14.1 cyclin J protein-coding 457.999 chr13 112097932 112098325 + 2.33333 NA intron (NR_120392, intron 2 of 3) UCON84|Unknown|Unknown -8991 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 1372.83 chr6 50791516 50792871 + 2.33333 NA Intergenic Intergenic -26678 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 316 chr1 79670935 79671181 + 2.33333 NA Intergenic Intergenic -664328 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 619-2 chr12 70543632 70544057 + 2.33333 NA intron (NM_001109754, intron 22 of 33) MIR|SINE|MIR 66180 NM_002837 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 199.666-8 chr5 36261517 36261648 + 2.33333 NA intron (NM_001323279, intron 6 of 12) intron (NM_001323279, intron 6 of 12) -19303 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 371-7 chr20 49729657 49729865 + 2.33333 NA Intergenic Intergenic -15883 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 344.333-12 chr6 54346695 54347079 + 2.33333 NA intron (NM_014464, intron 5 of 10) intron (NM_014464, intron 5 of 10) 38446 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 437.5-8 chr7 3907414 3907813 + 2.33333 NA intron (NM_152744, intron 5 of 44) L1MB4|LINE|L1 -222072 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1196.67-3 chr9 98774828 98776536 + 2.33333 NA intron (NM_173551, intron 8 of 14) intron (NM_173551, intron 8 of 14) 20873 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 368.666-2 chr17 19661169 19661358 + 2.33333 NA exon (NM_001031806, exon 6 of 11) exon (NM_001031806, exon 6 of 11) 12512 NM_000382 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 233.167-8 chr13 40064917 40065256 + 2.33333 NA Intergenic Intergenic -116723 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 320.666-3 chr1 203670637 203670896 + 2.33333 NA intron (NM_001365784, intron 1 of 20) intron (NM_001365784, intron 1 of 20) 42829 NM_001365784 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 454.499 chr2 86105597 86105962 + 2.33333 NA promoter-TSS (NM_017952) promoter-TSS (NM_017952) 107 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 467.666-2 chr9 33355106 33355344 + 2.33333 NA intron (NM_002504, intron 19 of 23) L1ME3|LINE|L1 47343 NM_001170 364 Hs.455323 NM_001170 ENSG00000165269 AQP7 AQP7L|AQPap|GLYCQTL aquaporin 7 protein-coding 331.334 chr10 98685429 98685781 + 2.33333 NA intron (NM_021828, intron 6 of 11) L1ME2z|LINE|L1 -238642 NM_001311345 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 941.499 chr10 44300848 44301562 + 2.33333 NA Intergenic Intergenic 8455 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 424.333-3 chr20 646527 646788 + 2.33333 NA TTS (NM_080725) TTS (NM_080725) 6543 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 324-9 chr2 190793043 190793356 + 2.33333 NA Intergenic Intergenic -87622 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 487.167 chr18 42053166 42053568 + 2.33333 NA intron (NM_001308020, intron 20 of 23) intron (NM_001308020, intron 20 of 23) 98133 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 520.999 chr10 116762683 116763069 + 2.33333 NA intron (NM_001330164, intron 2 of 12) L2c|LINE|L2 -20310 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 199.666 chr1 93709805 93709893 + 2.33333 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -28012 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 403.333-3 chr20 50087632 50087936 + 2.33333 NA intron (NM_022442, intron 2 of 3) L1ME3G|LINE|L1 25366 NM_001032288 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 341-4 chr16 11797330 11797514 + 2.33333 NA promoter-TSS (NM_014153) promoter-TSS (NM_014153) -164 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 842.333 chr21 18384513 18385211 + 2.33333 NA intron (NM_002772, intron 3 of 24) (TATC)n|Simple_repeat|Simple_repeat 18923 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 328.666-5 chr8 110128214 110128437 + 2.33333 NA Intergenic Intergenic -152554 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 427.334-6 chr3 131730347 131730581 + 2.33333 NA intron (NM_130808, intron 2 of 15) MIRb|SINE|MIR -227493 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 170.333 chr1 101653507 101653583 + 2.33333 NA Intergenic L1MA4|LINE|L1 193535 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 341-6 chr22 41517828 41518190 + 2.33333 NA intron (NM_001098, intron 7 of 17) intron (NM_001098, intron 7 of 17) 26461 NM_001018050 171568 Hs.712617 NM_138338 ENSG00000100413 POLR3H RPC22.9|RPC8 RNA polymerase III subunit H protein-coding 444.667-3 chr14 54108324 54108961 + 2.33333 NA Intergenic Intergenic -151751 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 782.167-2 chr20 54207450 54208113 + 2.33333 NA promoter-TSS (NM_002623) promoter-TSS (NM_002623) -306 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 271.333-24 chr6 49547726 49547922 + 2.33333 NA Intergenic MER5B|DNA|hAT-Charlie -2844 NM_001145652 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 590.5 chr1 100463606 100463965 + 2.33333 NA intron (NM_001319212, intron 8 of 13) intron (NM_001319212, intron 8 of 13) -74354 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 457.833-3 chr17 8120375 8120960 + 2.33333 NA TTS (NM_001165967) TTS (NM_001165967) -1751 NM_001165960 59344 Hs.232770 NM_021628 ENSG00000179148 ALOXE3 ARCI3|E-LOX|eLOX-3|eLOX3 arachidonate lipoxygenase 3 protein-coding 251.167-4 chr10 17409114 17409310 + 2.33333 NA TTS (NR_034129) TTS (NR_034129) 22276 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 547.499 chr19 48255664 48255985 + 2.33333 NA promoter-TSS (NM_001184900) promoter-TSS (NM_001184900) 88 NM_001184902 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 673.333 chr2 37886505 37887021 + 2.33333 NA Intergenic Intergenic -10900 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 1098.5 chr20 8389107 8390176 + 2.33333 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 140937 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 326.833-13 chr4 167023530 167023732 + 2.33333 NA intron (NM_001204354, intron 2 of 9) intron (NM_001204354, intron 2 of 9) 210795 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 501-3 chr12 44426405 44426755 + 2.33333 NA Intergenic L2a|LINE|L2 449081 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 497-6 chr5 4862593 4862965 + 2.33333 NA Intergenic Intergenic 89298 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 438.5-3 chr11 19935351 19935819 + 2.33333 NA intron (NM_182964, intron 7 of 37) intron (NM_182964, intron 7 of 37) -86971 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 344-21 chr8 88947105 88947427 + 2.33333 NA Intergenic Intergenic -619783 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 520.166 chr5 163473416 163473797 + 2.33333 NA intron (NM_012484, intron 9 of 17) intron (NM_012484, intron 9 of 17) 12974 NM_012485 3161 Hs.740467 NM_012484 ENSG00000072571 HMMR CD168|IHABP|RHAMM hyaluronan mediated motility receptor protein-coding 358.167-9 chr4 52385451 52385657 + 2.33333 NA Intergenic L1PA16|LINE|L1 270985 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 407.166-4 chr9 2822590 2822803 + 2.33333 NA intron (NM_014878, intron 12 of 17) (TGAATTA)n|Simple_repeat|Simple_repeat 21399 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 287.333-24 chr9 108953932 108954609 + 2.33333 NA intron (NM_003798, intron 12 of 18) Tigger10|DNA|TcMar-Tigger 19870 NM_017832 54942 Hs.29276 NM_017832 ENSG00000119328 ABITRAM C9orf6|CG-8|FAM206A|Simiate actin binding transcription modulator protein-coding 413.666-2 chr4 79612876 79613298 + 2.33333 NA Intergenic Intergenic 120494 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 350.833-7 chr5 99027500 99027771 + 2.33333 NA Intergenic Intergenic -97921 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 514 chr18 5003500 5003889 + 2.33333 NA Intergenic L1MA2|LINE|L1 -77488 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1071.5-2 chr1 167540323 167541174 + 2.33333 NA TTS (NM_003851) TTS (NM_003851) 13014 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 395.167-5 chr17 49354889 49355269 + 2.33333 NA intron (NR_135579, intron 1 of 7) intron (NR_135579, intron 1 of 7) -6086 NR_110884 102724596 Hs.559253 NR_110882 ENSG00000248714 LOC102724596 - uncharacterized LOC102724596 ncRNA 538.667 chr10 101840346 101841268 + 2.33333 NA promoter-TSS (NM_173194) promoter-TSS (NM_173194) -936 NM_173194 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 536.666-3 chr10 22573916 22574411 + 2.33333 NA intron (NM_005028, intron 4 of 9) intron (NM_005028, intron 4 of 9) -136234 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 307.334-6 chr5 78472580 78472837 + 2.33333 NA intron (NR_110885, intron 7 of 7) intron (NR_110885, intron 7 of 7) 112091 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 313.333-20 chr8 75000977 75001229 + 2.33333 NA intron (NM_001286778, intron 1 of 13) A-rich|Low_complexity|Low_complexity 948 NM_001286777 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 354.333-3 chr12 34192639 34192803 + 2.33333 NA Intergenic L1PA2|LINE|L1 170225 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 281.5 chr1 47650386 47650698 + 2.33333 NA Intergenic Intergenic -213225 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 356.667-5 chr14 50929985 50930385 + 2.33333 NA intron (NM_002863, intron 4 of 19) intron (NM_002863, intron 4 of 19) 14298 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 485.333 chr11 95092871 95093266 + 2.33333 NA intron (NM_015036, intron 1 of 1) intron (NM_015036, intron 1 of 1) 3222 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 349 chr1 43649936 43650263 + 2.33333 NA promoter-TSS (NM_014663) promoter-TSS (NM_014663) -50 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 320.833-5 chr3 51340411 51340705 + 2.33333 NA intron (NM_004947, intron 37 of 52) intron (NM_004947, intron 37 of 52) -44733 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 288.5-21 chr4 39476922 39477113 + 2.33333 NA intron (NM_001278590, intron 9 of 9) intron (NM_001278590, intron 9 of 9) -3238 NR_026854 401127 Hs.383197 NR_026854 ENSG00000224097 LOC401127 - WD repeat domain 5 pseudogene pseudo 620.333 chr10 69885206 69885652 + 2.33333 NA intron (NM_080801, intron 6 of 38) intron (NM_080801, intron 6 of 38) 83523 NM_001320951 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 532.334-5 chr5 107881512 107881908 + 2.33333 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -210773 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 759.334 chr1 99685843 99686599 + 2.33333 NA intron (NM_017734, intron 3 of 7) intron (NM_017734, intron 3 of 7) 26732 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 537.499 chr11 124195328 124195715 + 2.33333 NA Intergenic L2|LINE|L2 10305 NM_001355213 26497 Hs.538726 NM_001355213 ENSG00000197309 OR10D3 HTPCRX09|OR10D3P olfactory receptor family 10 subfamily D member 3 (putative) protein-coding 703.5 chr20 38925661 38926388 + 2.33333 NA promoter-TSS (NM_030919) promoter-TSS (NM_030919) -393 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 1180 chr1 50929098 50930115 + 2.33333 NA intron (NM_007051, intron 1 of 18) intron (NM_007051, intron 1 of 18) 30661 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 493.5-4 chr2 127196859 127197527 + 2.33333 NA intron (NM_001001665, intron 4 of 7) Charlie29a|DNA|hAT-Charlie 8574 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 500.333-2 chr10 71915889 71916371 + 2.33333 NA Intergenic Intergenic -48265 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 565.499 chr3 39406617 39407050 + 2.33333 NA intron (NM_002295, intron 1 of 6) CpG 113 NM_002295 3921 Hs.449909 NM_002295 ENSG00000168028 RPSA 37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40 ribosomal protein SA protein-coding 280-21 chr6 152034676 152034814 + 2.33333 NA intron (NM_001122741, intron 6 of 8) LTR80B|LTR|ERVL 133542 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 1090.5 chr17 56499565 56500382 + 2.33333 NA intron (NM_001370326, intron 20 of 20) intron (NM_001370326, intron 20 of 20) -93726 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 507.166-4 chr8 19242679 19242994 + 2.33333 NA intron (NR_038919, intron 1 of 4) intron (NR_038919, intron 1 of 4) 2686 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 374.333-4 chr8 49539298 49539541 + 2.33333 NA Intergenic Intergenic -27239 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 408.333-4 chr3 167917679 167917885 + 2.33333 NA intron (NR_145443, intron 5 of 6) intron (NR_145443, intron 5 of 6) 21834 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 474-6 chr2 44236452 44237132 + 2.33333 NA Intergenic Intergenic -38688 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 482-3 chr11 44561400 44561805 + 2.33333 NA Intergenic MSTC|LTR|ERVL-MaLR -4061 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 361.666-5 chr6 141676445 141676729 + 2.33333 NA Intergenic Intergenic 412212 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 207.333-43 chr6 82397125 82397337 + 2.33333 NA Intergenic Intergenic 32987 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 669.666-3 chr7 16077809 16078275 + 2.33333 NA Intergenic Intergenic -132444 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 324.666-4 chr20 43844851 43845042 + 2.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -49772 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 440.333 chr1 52296221 52296656 + 2.33333 NA intron (NM_007324, intron 11 of 17) L1M4a2|LINE|L1 69767 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 339.333-11 chr3 41021073 41021289 + 2.33333 NA Intergenic AluSz|SINE|Alu -178324 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 641.334 chr1 175146473 175147066 + 2.33333 NA intron (NM_022093, intron 18 of 18) intron (NM_022093, intron 18 of 18) 46007 NM_014656 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 565.5 chr8 81512245 81513056 + 2.33333 NA Intergenic Intergenic 18740 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 306.666 chr10 114103475 114103914 + 2.33333 NA Intergenic Intergenic 59828 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 488.999 chr10 94362602 94362919 + 2.33333 NA intron (NM_022451, intron 1 of 20) intron (NM_022451, intron 1 of 20) 179 NM_022451 64318 Hs.74899 NM_022451 ENSG00000173145 NOC3L AD24|C10orf117|FAD24 NOC3 like DNA replication regulator protein-coding 200.667-41 chr5 1559264 1559501 + 2.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 35149 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex flavoprotein subunit A pseudogene 3 pseudo 461.166 chr15 85626309 85626519 + 2.33333 NA intron (NM_001270546, intron 1 of 28) L1MB3|LINE|L1 6464 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 328-7 chr14 82537765 82537914 + 2.33333 NA Intergenic Intergenic -104793 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 378.001-2 chr5 53916977 53917388 + 2.33333 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) 34417 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 397.833-2 chr3 72977003 72977238 + 2.33333 NA TTS (NR_138564) TTS (NR_138564) -19623 NM_001318026 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 445-7 chrX 71999288 71999792 + 2.33333 NA intron (NM_001013627, intron 1 of 7) L1MD3|LINE|L1 -44869 NR_002309 441502 Hs.449523 NR_002309 RPS26P11 RPS26L1|RPS26_22_1784|bA366E13.1 ribosomal protein S26 pseudogene 11 pseudo 274.5-4 chr12 47022147 47022665 + 2.33333 NA Intergenic Intergenic -57197 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 430.333 chr11 69670197 69670689 + 2.33333 NA intron (NM_153451, intron 3 of 4) intron (NM_153451, intron 3 of 4) 4910 NM_153451 220064 Hs.667996 NM_153451 ENSG00000149716 LTO1 CIAB1|ORAOV1|TAOS1 LTO1 maturation factor of ABCE1 protein-coding 993.5-3 chr4 114384642 114385732 + 2.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -213215 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 414.833-9 chr8 86892282 86892835 + 2.33333 NA intron (NM_173538, intron 2 of 10) intron (NM_173538, intron 2 of 10) 26143 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 369.5-6 chr14 72285895 72286225 + 2.33333 NA intron (NM_001370288, intron 2 of 16) L1MA10|LINE|L1 -230760 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 246.5-15 chr16 31898262 31898521 + 2.33333 NA intron (NR_049749, intron 4 of 4) L1M4c|LINE|L1 24584 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 508.666-8 chr8 20223714 20224195 + 2.33333 NA Intergenic Intergenic 26573 NM_001693 526 Hs.295917 NM_001693 ENSG00000147416 ATP6V1B2 ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2 ATPase H+ transporting V1 subunit B2 protein-coding 392.5-9 chr7 117401228 117401538 + 2.33333 NA intron (NM_001301821, intron 4 of 12) L1MEg|LINE|L1 26110 NM_130768 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 564.833 chr1 146036180 146036651 + 2.33333 NA Intergenic L1ME4b|LINE|L1 -14593 NM_213653 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 704.167 chr12 102948608 102949213 + 2.33333 NA intron (NM_001354304, intron 1 of 13) intron (NM_001354304, intron 1 of 13) -8764 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 300.166-4 chr7 91171508 91171723 + 2.33333 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -92818 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 747.332 chr8 10417630 10418200 + 2.33333 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -56650 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 394.667-2 chr12 26123642 26124026 + 2.33333 NA intron (NM_030762, intron 3 of 4) intron (NM_030762, intron 3 of 4) 1203 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 404-6 chr4 162500537 162500879 + 2.33333 NA Intergenic Intergenic -336674 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 394.334-7 chr6 86850817 86851047 + 2.33333 NA Intergenic Intergenic -86596 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 393.166-5 chr3 136134365 136134698 + 2.33333 NA intron (NM_181897, intron 12 of 12) L1ME4a|LINE|L1 59937 NM_001145417 55167 Hs.18631 NM_018133 ENSG00000174579 MSL2 MSL-2|MSL2L1|RNF184 MSL complex subunit 2 protein-coding 527.167 chr1 1724424 1724760 + 2.33333 NA promoter-TSS (NM_001313896) promoter-TSS (NM_001313896) -235 NM_033529 728642 Hs.651228 NM_024011 ENSG00000008128 CDK11A CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA cyclin dependent kinase 11A protein-coding 605.667 chr1 176691418 176691902 + 2.33333 NA TTS (NM_021936) TTS (NM_021936) 228485 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 447.333-2 chr19 3700661 3700902 + 2.33333 NA promoter-TSS (NM_001300849) promoter-TSS (NM_001300849) -313 NM_001195733 23396 Hs.282177 NM_012398 ENSG00000186111 PIP5K1C LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma phosphatidylinositol-4-phosphate 5-kinase type 1 gamma protein-coding 479.333-3 chr12 52496534 52496988 + 2.33333 NA Intergenic Intergenic -3504 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 494.333-2 chr6 83161122 83161438 + 2.33333 NA intron (NR_159812, intron 13 of 14) intron (NR_159812, intron 13 of 14) 31985 NR_159812 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 512 chr1 96771376 96771858 + 2.33333 NA intron (NM_001300985, intron 5 of 13) intron (NM_001300985, intron 5 of 13) 48979 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 455.333-4 chr2 32135336 32135816 + 2.33333 NA intron (NM_001363875, intron 8 of 15) intron (NM_001363875, intron 8 of 15) -30265 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 626.834-2 chr8 106082721 106083459 + 2.33333 NA Intergenic Intergenic -22587 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 319.5-18 chr8 30016136 30016709 + 2.33333 NA Intergenic Intergenic -59074 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 397-6 chr15 83684372 83684703 + 2.33333 NA intron (NM_207517, intron 2 of 29) FAM|SINE|Alu 30414 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 505.834-2 chr11 29432880 29433263 + 2.33333 NA Intergenic Intergenic -161342 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 387-12 chr2 232315415 232315779 + 2.33333 NA intron (NR_046476, intron 14 of 20) intron (NR_046476, intron 14 of 20) -63154 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|ALPI|IAP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 274.833-7 chr2 96718931 96719214 + 2.33333 NA intron (NM_001322354, intron 3 of 7) intron (NM_001322354, intron 3 of 7) 21004 NM_001142292 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 607.167-2 chr7 46456409 46456946 + 2.33333 NA Intergenic Intergenic 240445 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 567.333-2 chr1 173595766 173596057 + 2.33333 NA intron (NM_178527, intron 4 of 27) L1ME1|LINE|L1 7161 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 462.167 chr2 200901561 200902018 + 2.33333 NA intron (NM_001369445, intron 6 of 6) L2|LINE|L2 9871 NM_001142356 60491 Hs.145284 NM_021824 ENSG00000196290 NIF3L1 ALS2CR1|CALS-7|MDS015 NGG1 interacting factor 3 like 1 protein-coding 602.166 chr5 82026504 82027058 + 2.33333 NA intron (NM_031482, intron 2 of 7) AluSg4|SINE|Alu 54758 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 299.834-2 chr11 76721459 76722215 + 2.33333 NA promoter-TSS (NR_024042) promoter-TSS (NR_024042) -48 NR_024042 390226 Hs.440026 NR_024042 GUCY2EP GC-E|GCD|GUCY2E guanylate cyclase 2E, pseudogene pseudo 297.5-17 chr5 18523798 18523932 + 2.33333 NA Intergenic Intergenic 716591 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 345.666-5 chr9 107285993 107286270 + 2.33333 NA intron (NM_001244713, intron 1 of 9) intron (NM_001244713, intron 1 of 9) 1362 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 450.167 chr10 29997830 29998576 + 2.33333 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 61383 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 508.499 chr15 53869205 53869555 + 2.33333 NA Intergenic Intergenic -106502 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 245-20 chr21 28882013 28882198 + 2.33333 NA intron (NM_013240, intron 3 of 5) intron (NM_013240, intron 3 of 5) 3262 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 293.666-7 chr7 125202470 125202656 + 2.33333 NA intron (NR_110188, intron 3 of 8) L1ME2|LINE|L1 17994 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 334.166-4 chr6 167351114 167351607 + 2.33333 NA Intergenic CpG 26274 NM_031949 83887 Hs.520554 NM_031949 ENSG00000120440 TTLL2 C6orf104|NYD-TSPG|dJ366N23.3 tubulin tyrosine ligase like 2 protein-coding 339.5-2 chr1 209653020 209653197 + 2.33333 NA promoter-TSS (NM_000228) promoter-TSS (NM_000228) -683 NM_000228 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 343.999-4 chr4 178468495 178468672 + 2.33333 NA Intergenic Intergenic -560647 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 351-2 chr11 98215401 98215667 + 2.33333 NA Intergenic L1MA7|LINE|L1 -805415 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 239-11 chr16 82287116 82287317 + 2.33333 NA Intergenic Intergenic -116992 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 426.666-4 chr7 56005032 56005216 + 2.33333 NA Intergenic AluSx|SINE|Alu 40539 NM_001483 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 399-7 chr18 5601957 5602181 + 2.33333 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) 26922 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 419.333 chr10 32692068 32692510 + 2.33333 NA intron (NM_001321115, intron 24 of 43) MER76-int|LTR|ERVL 209183 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 445-4 chr22 36286192 36286999 + 2.33333 NA TTS (NR_106877) TTS (NR_106877) 312 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 288-15 chr2 36184501 36184816 + 2.33333 NA Intergenic Intergenic 170912 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 942.666 chr13 77478051 77478909 + 2.33333 NA Intergenic Intergenic -57194 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 577.833-2 chr21 32402991 32403338 + 2.33333 NA Intergenic L1MB3|LINE|L1 -8559 NM_001320745 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 521.833 chr1 40032184 40032707 + 2.33333 NA Intergenic Intergenic -7620 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 473.333-7 chr5 120604981 120605579 + 2.33333 NA intron (NM_001308088, intron 1 of 3) L1PA16|LINE|L1 73816 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 197-25 chr4 96352400 96352508 + 2.33333 NA intron (NR_147149, intron 1 of 3) L2a|LINE|L2 41751 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 710.166 chr9 116495041 116495640 + 2.33333 NA intron (NM_014010, intron 18 of 21) MLT1K|LTR|ERVL-MaLR -8943 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 418.666-2 chr13 40413122 40413468 + 2.33333 NA intron (NR_024506, intron 5 of 5) L1MC5|LINE|L1 67711 NR_024506 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 266.666-2 chr10 66575414 66575542 + 2.33333 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -350558 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 587.666-4 chr6 129775358 129775873 + 2.33333 NA Intergenic Intergenic -65438 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 364.999 chr4 171846221 171846385 + 2.33333 NA intron (NM_001034845, intron 2 of 12) Tigger17|DNA|TcMar-Tigger -32696 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 719 chr12 52279919 52280584 + 2.33333 NA intron (NM_001320198, intron 2 of 10) intron (NM_001320198, intron 2 of 10) 5606 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 337-6 chr16 68800231 68800500 + 2.33333 NA intron (NM_001317185, intron 2 of 15) MIRc|SINE|MIR -43166 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 529.833 chr15 86231875 86232603 + 2.33333 NA intron (NM_152336, intron 6 of 24) intron (NM_152336, intron 6 of 24) 84729 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 281.333-5 chr11 96819825 96820048 + 2.33333 NA Intergenic L1ME3B|LINE|L1 311511 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 539.666-4 chr14 50726316 50726662 + 2.33333 NA TTS (NM_182944) TTS (NM_182944) -58183 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 469.333 chr1 72953380 72953783 + 2.33333 NA Intergenic L1MC1|LINE|L1 -352589 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 435.5-3 chr13 52665477 52665913 + 2.33333 NA exon (NM_006704, exon 9 of 13) exon (NM_006704, exon 9 of 13) 12859 NM_001130912 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 1031.17 chr12 5441231 5441965 + 2.33333 NA intron (NM_001102654, intron 1 of 1) L2c|LINE|L2 9490 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 631.666-2 chr11 65381758 65382820 + 2.33333 NA promoter-TSS (NM_001352384) promoter-TSS (NM_001352384) -318 NM_001352381 283130 Hs.661604 NM_182556 ENSG00000162241 SLC25A45 - solute carrier family 25 member 45 protein-coding 426.333-2 chr2 21857872 21858092 + 2.33333 NA Intergenic L1M2|LINE|L1 -147330 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 586.166-2 chr7 30740400 30740989 + 2.33333 NA Intergenic Intergenic -11441 NR_037598 100526825 Hs.660192 NR_037598 ENSG00000254959 INMT-MINDY4 INMT-FAM188B INMT-MINDY4 readthrough (NMD candidate) ncRNA 406.167 chr1 171290452 171290771 + 2.33333 NA Intergenic L1ME3G|LINE|L1 -23572 NM_002022 2329 Hs.386502 NM_002022 ENSG00000076258 FMO4 FMO2 flavin containing dimethylaniline monoxygenase 4 protein-coding 577.167-3 chrX 10119533 10120050 + 2.33333 NA intron (NM_015691, intron 11 of 22) intron (NM_015691, intron 11 of 22) -37154 NM_001256944 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 637.834 chr1 223123702 223124375 + 2.33333 NA intron (NM_003268, intron 5 of 5) Tigger9b|DNA|TcMar-Tigger 19210 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 422.167-7 chr8 135357051 135357332 + 2.33333 NA Intergenic Intergenic -100265 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 323.666-9 chr5 174275959 174276203 + 2.33333 NA Intergenic Intergenic -60273 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 563.5 chr5 57779526 57779988 + 2.33333 NA Intergenic Intergenic 119405 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 329.667-7 chr3 167527094 167527268 + 2.33333 NA intron (NM_001348951, intron 15 of 18) MIR|SINE|MIR -53049 NM_006217 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 404.5-3 chr10 110547315 110547616 + 2.33333 NA Intergenic Intergenic -20226 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 305.667 chr1 108848545 108848717 + 2.33333 NA intron (NM_152763, intron 5 of 15) intron (NM_152763, intron 5 of 15) 8463 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 357.333-13 chr6 77805815 77805986 + 2.33333 NA intron (NM_001282136, intron 3 of 4) CR1-L3A_Croc|LINE|CR1 152861 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 166.167-6 chr10 7260522 7260615 + 2.33333 NA intron (NM_001029880, intron 7 of 20) MLT1L|LTR|ERVL-MaLR -73784 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 408.667-7 chrX 145213325 145213891 + 2.33333 NA Intergenic Intergenic -33895 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 375.666 chr10 119933117 119933289 + 2.33333 NA intron (NM_007190, intron 17 of 18) intron (NM_007190, intron 17 of 18) -25310 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 582.667 chr20 8853416 8853995 + 2.33333 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) 22520 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 404-3 chr12 57752477 57752754 + 2.33333 NA promoter-TSS (NM_000075) promoter-TSS (NM_000075) -305 NM_000075 1019 Hs.95577 NM_000075 ENSG00000135446 CDK4 CMM3|PSK-J3 cyclin dependent kinase 4 protein-coding 382-7 chr18 42114125 42114753 + 2.33333 NA Intergenic MIRc|SINE|MIR -72229 NR_046458 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 612.499 chr11 131748287 131748734 + 2.33333 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -84954 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 193.667-2 chr1 76830627 76830729 + 2.33333 NA Intergenic Intergenic -36802 NM_001320274 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 175.833-34 chr4 122913550 122913746 + 2.33333 NA intron (NM_198041, intron 2 of 4) intron (NM_198041, intron 2 of 4) 8949 NM_007083 11162 Hs.558459 NM_007083 ENSG00000170917 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix hydrolase 6 protein-coding 811.499 chr1 201828457 201829421 + 2.33333 NA promoter-TSS (NM_018085) promoter-TSS (NM_018085) -218 NM_018085 55705 Hs.596014 NM_018085 ENSG00000198700 IPO9 Imp9 importin 9 protein-coding 1020.83 chr1 58163131 58163977 + 2.33333 NA intron (NM_001353980, intron 1 of 5) L1M4a2|LINE|L1 86949 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 191.667-43 chr8 56930609 56930913 + 2.33333 NA Intergenic Intergenic 63106 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 430.501-3 chr21 27690962 27691305 + 2.33333 NA Intergenic Intergenic -31246 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 551.666 chr10 94444195 94444728 + 2.33333 NA intron (NM_015188, intron 2 of 12) intron (NM_015188, intron 2 of 12) 41920 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 487.333-2 chr11 4379843 4380207 + 2.33333 NA Intergenic MIRc|SINE|MIR -11639 NM_001005161 143496 Hs.447463 NM_001005161 ENSG00000221996 OR52B4 OR11-3 olfactory receptor family 52 subfamily B member 4 (gene/pseudogene) protein-coding 179-36 chr6 50395904 50396011 + 2.33333 NA Intergenic MIR|SINE|MIR -317587 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 876.833-4 chr2 154401890 154402569 + 2.33333 NA intron (NM_052917, intron 10 of 12) intron (NM_052917, intron 10 of 12) 55209 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 890 chr10 128211645 128212349 + 2.33333 NA Intergenic Intergenic -73953 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 372.166 chr1 91008777 91009129 + 2.33333 NA intron (NM_201269, intron 1 of 5) A-rich|Low_complexity|Low_complexity 12555 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 425.333-2 chr19 47391301 47392073 + 2.33333 NA Intergenic L2c|LINE|L2 27840 NM_001301059 56917 Hs.380923 NM_020160 ENSG00000105419 MEIS3 MRG2 Meis homeobox 3 protein-coding 306.667-15 chr22 39783054 39783236 + 2.33333 NA intron (NM_152512, intron 5 of 6) L1MA4|LINE|L1 110615 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 850.334 chr17 78496990 78497702 + 2.33333 NA intron (NR_102401, intron 5 of 5) intron (NR_102401, intron 5 of 5) 12436 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 791.167-2 chr14 28753870 28754825 + 2.33333 NA intron (NR_125758, intron 2 of 6) intron (NR_125758, intron 2 of 6) 10972 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 489.666-2 chr2 89779703 89780186 + 2.33333 NA Intergenic Intergenic -142037 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 421.833-5 chr3 95681902 95682227 + 2.33333 NA intron (NR_077228, intron 1 of 4) intron (NR_077228, intron 1 of 4) 1129 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 429.167-10 chr5 23654598 23654990 + 2.33333 NA Intergenic L2a|LINE|L2 147139 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 310.333-13 chr7 70857937 70858145 + 2.33333 NA Intergenic LTR49|LTR|ERV1 -274103 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 184.666-5 chr5 31359727 31359831 + 2.33333 NA Intergenic Intergenic 166093 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 491-3 chr10 118259442 118259752 + 2.33333 NA Intergenic Intergenic 82727 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 431-6 chr16 62869859 62870059 + 2.33333 NA Intergenic Intergenic -833521 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 414.833-4 chr12 107692602 107692809 + 2.33333 NA intron (NM_007062, intron 3 of 14) intron (NM_007062, intron 3 of 14) 6663 NM_001317962 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 318.666-6 chr6 26027216 26027412 + 2.33333 NA promoter-TSS (NM_003544) promoter-TSS (NM_003544) -62 NM_003544 8366 Hs.143080 NM_003544 ENSG00000278705 HIST1H4B H4/I|H4FI histone cluster 1 H4 family member b protein-coding 789.833 chr7 86939058 86939643 + 2.33333 NA intron (NM_001291991, intron 5 of 20) intron (NM_001291991, intron 5 of 20) 26549 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 312.667-10 chr2 75903882 75904054 + 2.33333 NA Intergenic HAL1|LINE|L1 -193053 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 487.666-4 chr3 170414219 170414615 + 2.33333 NA Intergenic Intergenic -4451 NM_005602 5010 Hs.31595 NM_005602 ENSG00000013297 CLDN11 OSP|OTM claudin 11 protein-coding 543-2 chr10 58353190 58353618 + 2.33333 NA intron (NM_003338, intron 1 of 6) MamSINE1|SINE|tRNA-RTE 18398 NM_003338 7321 Hs.129683 NM_003338 ENSG00000072401 UBE2D1 E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A ubiquitin conjugating enzyme E2 D1 protein-coding 386.333-10 chr5 178063031 178063379 + 2.33333 NA non-coding (NR_149722, exon 16 of 16) non-coding (NR_149722, exon 16 of 16) -50327 NM_015111 23138 Hs.101761 NM_015111 ENSG00000145911 N4BP3 LZTS4 NEDD4 binding protein 3 protein-coding 724.999 chr14 46344221 46344774 + 2.33333 NA intron (NR_102702, intron 3 of 3) MER20|DNA|hAT-Charlie -126862 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 215 chr1 55893292 55893434 + 2.33333 NA Intergenic L1PREC2|LINE|L1 51600 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 485.167-4 chr3 165185647 165185943 + 2.33333 NA TTS (NM_001318810) TTS (NM_001318810) 10589 NM_001318810 22865 Hs.101745 NM_014926 ENSG00000121871 SLITRK3 - SLIT and NTRK like family member 3 protein-coding 383-12 chr8 80965404 80965590 + 2.33333 NA Intergenic L2a|LINE|L2 -90716 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 477.333-6 chr16 58005500 58005833 + 2.33333 NA intron (NM_001330568, intron 2 of 6) LTR13|LTR|ERVK 4259 NM_001204911 79650 Hs.408702 NM_024598 ENSG00000103005 USB1 C16orf57|HVSL1|Mpn1|PN|hUsb1 U6 snRNA biogenesis phosphodiesterase 1 protein-coding 553.333-3 chr5 146500001 146500328 + 2.33333 NA intron (NM_006706, intron 16 of 21) intron (NM_006706, intron 16 of 21) 15949 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 269.667-2 chr1 64241349 64241588 + 2.33333 NA intron (NR_158768, intron 8 of 9) intron (NR_158768, intron 8 of 9) 37845 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 408.334-3 chr2 46129723 46130061 + 2.33333 NA intron (NM_005400, intron 11 of 14) intron (NM_005400, intron 11 of 14) -167515 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 490.333-4 chr19 45572473 45572794 + 2.33333 NA intron (NM_025136, intron 1 of 1) (AT)n|Simple_repeat|Simple_repeat 12169 NM_001017989 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 outer mitochondrial membrane lipid metabolism regulator OPA3 protein-coding 978.167-2 chr8 30918250 30919203 + 2.33333 NA Intergenic Intergenic -5718 NM_001350162 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 412.167-3 chr2 216521894 216522180 + 2.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR 23193 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 264.166-3 chr5 172267525 172267678 + 2.33333 NA intron (NM_152277, intron 1 of 2) intron (NM_152277, intron 1 of 2) 16163 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 389-7 chr17 61655017 61655202 + 2.33333 NA Intergenic L1MCa|LINE|L1 -63890 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 255.167-20 chr2 204983786 204984182 + 2.33333 NA intron (NM_205863, intron 3 of 21) MER34|LTR|ERV1 438509 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 493.167-3 chr6 56370231 56370806 + 2.33333 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 23610 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 825.5 chr9 123349815 123350756 + 2.33333 NA Intergenic Intergenic -5912 NM_173689 286204 Hs.568340 NM_173689 ENSG00000148204 CRB2 FSGS9|VMCKD crumbs cell polarity complex component 2 protein-coding 1367.5 chr3 179146822 179148098 + 2.33333 NA promoter-TSS (NM_006218) promoter-TSS (NM_006218) 513 NR_125401 101928739 Hs.434553 NR_125401 ENSG00000229102 LOC101928739 - uncharacterized LOC101928739 ncRNA 379.333-7 chr3 15150070 15150387 + 2.33333 NA Intergenic Intergenic -51071 NR_126155 64145 Hs.475565 NM_022340 ENSG00000131381 RBSN Rabenosyn-5|ZFYVE20 rabenosyn, RAB effector protein-coding 574.667-2 chr9 127199221 127199665 + 2.33333 NA intron (NM_014636, intron 14 of 18) intron (NM_014636, intron 14 of 18) -64219 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 251.666-3 chr17 77966917 77967047 + 2.33333 NA Intergenic Intergenic -37255 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 862.999 chr1 223081249 223082329 + 2.33333 NA Intergenic Intergenic 61459 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 542.667-3 chr8 85973309 85973807 + 2.33333 NA Intergenic Intergenic 96110 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 300-18 chr5 163437390 163437566 + 2.33333 NA promoter-TSS (NM_001364020) promoter-TSS (NM_001364020) -93 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 769.5 chr9 131349842 131350360 + 2.33333 NA Intergenic L2b|LINE|L2 60378 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 417.666 chr11 67239762 67240012 + 2.33333 NA promoter-TSS (NM_001256405) promoter-TSS (NM_001256405) -127 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 326.333-4 chr2 55481746 55481887 + 2.33333 NA Intergenic Intergenic -37779 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 307.666 chr12 52273584 52273775 + 2.33333 NA promoter-TSS (NM_001320198) promoter-TSS (NM_001320198) -966 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 564.833-5 chr4 41538114 41538470 + 2.33333 NA 5' UTR (NM_001330672, exon 1 of 32) 5' UTR (NM_001330672, exon 1 of 32) 135 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 236-17 chr4 156392113 156392325 + 2.33333 NA Intergenic Intergenic -438353 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 537.667-2 chr14 85827860 85828598 + 2.33333 NA Intergenic MIRb|SINE|MIR -106449 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 457.833 chr10 93471144 93471592 + 2.33333 NA intron (NM_013451, intron 1 of 53) intron (NM_013451, intron 1 of 53) 10966 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 360 chr1 26677660 26677885 + 2.33333 NA Intergenic Intergenic 16359 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 528.666-4 chr7 114405465 114405868 + 2.33333 NA intron (NR_033766, intron 2 of 19) intron (NR_033766, intron 2 of 19) -9149 NM_001172766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 1031 chr10 58781319 58782242 + 2.33333 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 66765 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 591.499-2 chr3 59575202 59575657 + 2.33333 NA Intergenic Intergenic 83068 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 275.333-7 chr17 20206734 20206873 + 2.33333 NA intron (NM_001033553, intron 4 of 14) L1ME4a|LINE|L1 50731 NM_001033554 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 266.334 chr1 28101679 28101939 + 2.33333 NA Intergenic LTR106_Mam|LTR|LTR -13172 NR_104214 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 245.666-6 chr2 109242838 109243044 + 2.33333 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) 70684 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 654.167 chr10 114821709 114822242 + 2.33333 NA 5' UTR (NM_020940, exon 1 of 17) 5' UTR (NM_020940, exon 1 of 17) 195 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 377-6 chr2 50221438 50221786 + 2.33333 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 126142 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 731.667-2 chr12 51980063 51980899 + 2.33333 NA intron (NM_004302, intron 3 of 8) intron (NM_004302, intron 3 of 8) -26465 NM_181711 160622 Hs.407202 NM_181711 ENSG00000161835 GRASP TAMALIN general receptor for phosphoinositides 1 associated scaffold protein protein-coding 312.333-23 chrX 25144215 25144520 + 2.33333 NA Intergenic Intergenic -128402 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 801 chr11 71977346 71977996 + 2.33333 NA intron (NR_024148, intron 3 of 8) intron (NR_024148, intron 3 of 8) -21238 NM_001039660 10068 Hs.591967 NM_005699 ENSG00000137496 IL18BP IL18BPa interleukin 18 binding protein protein-coding 424.166 chr10 50789614 50789896 + 2.33333 NA Intergenic Intergenic 49819 NM_001321959 653308 Hs.659820 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3|bA98I6.3 N-acylsphingosine amidohydrolase 2B protein-coding 234.167-15 chr20 34763011 34763169 + 2.33333 NA intron (NM_001242539, intron 3 of 11) L1ME4b|LINE|L1 19314 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 510-5 chr3 50192517 50192996 + 2.33333 NA intron (NM_000172, intron 1 of 8) intron (NM_000172, intron 1 of 8) 1146 NM_144499 2779 Hs.517978 NM_000172 ENSG00000114349 GNAT1 CSNB1G|CSNBAD3|GBT1|GNATR G protein subunit alpha transducin 1 protein-coding 1070.83 chr2 35415073 35415782 + 2.33333 NA Intergenic Intergenic -55978 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 432.333-9 chr4 100040383 100040724 + 2.33333 NA Intergenic L1ME3|LINE|L1 90059 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 266.333-17 chr8 86509663 86509825 + 2.33333 NA promoter-TSS (NM_001286707) promoter-TSS (NM_001286707) -964 NM_001286707 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 419.999 chr18 63546598 63546869 + 2.33333 NA Intergenic Intergenic -9427 NM_080474 89777 Hs.348541 NM_080474 ENSG00000166634 SERPINB12 YUKOPIN serpin family B member 12 protein-coding 292-16 chr3 15612735 15612934 + 2.33333 NA intron (NM_001281725, intron 1 of 3) MLT1E1|LTR|ERVL-MaLR 10865 NM_001281725 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 212-35 chr4 39978777 39978966 + 2.33333 NA promoter-TSS (NM_001100400) promoter-TSS (NM_001100400) -915 NM_001100400 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 822.667-2 chr9 33813453 33814533 + 2.33333 NA Intergenic L2a|LINE|L2 -3167 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 421.833-7 chr8 132167300 132167561 + 2.33333 NA intron (NM_001204824, intron 8 of 14) L1MB7|LINE|L1 -62165 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 423.666 chr17 28765663 28765908 + 2.33333 NA intron (NM_001288631, intron 2 of 3) intron (NM_001288631, intron 2 of 3) 21774 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding 279.666-9 chr5 39295585 39295980 + 2.33333 NA intron (NM_001737, intron 9 of 10) L1MA5A|LINE|L1 -25133 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 721 chr13 92193494 92194094 + 2.33333 NA intron (NM_004466, intron 7 of 7) L2a|LINE|L2 158413 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 631.833-2 chr8 31185151 31185928 + 2.33333 NA Intergenic Intergenic -152183 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 544.333-2 chr6 101397138 101397489 + 2.33333 NA Intergenic Intergenic -1672 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 411.333-11 chr7 43462940 43463250 + 2.33333 NA intron (NM_001287059, intron 11 of 27) intron (NM_001287059, intron 11 of 27) 59447 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 476.499-2 chr5 163564268 163564562 + 2.33333 NA Intergenic Intergenic 58796 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 342.833-8 chr17 9554749 9555163 + 2.33333 NA intron (NM_004853, intron 3 of 7) intron (NM_004853, intron 3 of 7) 20864 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 455.001-4 chr4 119300759 119301120 + 2.33333 NA promoter-TSS (NM_001001701) promoter-TSS (NM_001001701) -294 NM_001001701 401152 Hs.173705 NM_001001701 ENSG00000164096 C4orf3 ALN|HCVFTP1 chromosome 4 open reading frame 3 protein-coding 436.667-3 chr12 87343961 87344522 + 2.33333 NA Intergenic Intergenic 13502 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 308-15 chr5 42703691 42703960 + 2.33333 NA intron (NM_001242403, intron 6 of 9) L1MA8|LINE|L1 -52993 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 488.833 chr17 77542649 77543371 + 2.33333 NA Intergenic Intergenic -3931 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 587.833-2 chr4 33073348 33073907 + 2.33333 NA Intergenic Intergenic 722589 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 748.167-2 chr3 72875436 72876127 + 2.33333 NA Intergenic AluJb|SINE|Alu -12265 NM_001080393 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 452.166 chr1 152162990 152163295 + 2.16667 NA Intergenic Intergenic -3914 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 302.501-5 chr7 43454387 43454564 + 2.16667 NA intron (NM_015052, intron 12 of 29) intron (NM_015052, intron 12 of 29) 68067 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 617.167-4 chr7 32164407 32164890 + 2.16667 NA intron (NM_001322059, intron 3 of 17) MIRb|SINE|MIR -93212 NM_001322055 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 235-21 chr3 100783447 100783679 + 2.16667 NA intron (NM_001349331, intron 32 of 42) MER58B|DNA|hAT-Charlie 74021 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 183.667-52 chr7 26843780 26843915 + 2.16667 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 13876 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 195.5-4 chr12 96141412 96141584 + 2.16667 NA Intergenic Intergenic -52877 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 442.334-4 chr5 148726432 148726814 + 2.16667 NA Intergenic Intergenic -72096 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 416.334-5 chr4 157342064 157342459 + 2.16667 NA intron (NM_001083620, intron 12 of 15) intron (NM_001083620, intron 12 of 15) 121533 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 232.5-16 chr2 142278727 142278936 + 2.16667 NA Intergenic L2a|LINE|L2 -147130 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 365.001-2 chr10 31816749 31816980 + 2.16667 NA intron (NM_001270696, intron 11 of 17) intron (NM_001270696, intron 11 of 17) 92062 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 437.5-4 chr3 6805335 6805777 + 2.16667 NA promoter-TSS (NR_110123) promoter-TSS (NR_110123) -107 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 386.166-2 chr7 38172926 38173225 + 2.16667 NA Intergenic L1MB5|LINE|L1 -5170 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 631.334 chr1 36608926 36609463 + 2.16667 NA Intergenic Intergenic -125880 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 236.166 chr14 55371895 55372110 + 2.16667 NA intron (NM_014924, intron 9 of 9) intron (NM_014924, intron 9 of 9) 39856 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 724.334-2 chr5 110231470 110232040 + 2.16667 NA Intergenic L1MA4A|LINE|L1 282160 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 323.5-15 chr6 78810400 78810605 + 2.16667 NA Intergenic Intergenic -57049 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 244.667-7 chr12 48157540 48157679 + 2.16667 NA promoter-TSS (NM_001319296) promoter-TSS (NM_001319296) -94 NM_001319296 140461 Hs.432699 NM_024095 ENSG00000177981 ASB8 PP14212 ankyrin repeat and SOCS box containing 8 protein-coding 705.333-2 chr4 73573560 73574145 + 2.16667 NA 3' UTR (NM_001270392, exon 10 of 10) 3' UTR (NM_001270392, exon 10 of 10) 46584 NM_001270391 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 173.167-39 chr7 22345600 22345681 + 2.16667 NA intron (NM_012294, intron 1 of 25) intron (NM_012294, intron 1 of 25) 11514 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 354.167-8 chr6 48710618 48710850 + 2.16667 NA Intergenic Intergenic -642045 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 598.5-3 chr6 11655335 11655989 + 2.16667 NA Intergenic AluYc|SINE|Alu 117913 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 398.167-7 chr7 15534475 15534801 + 2.16667 NA intron (NM_001004320, intron 3 of 12) intron (NM_001004320, intron 3 of 12) 27377 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 300.166-2 chr20 36923433 36923757 + 2.16667 NA intron (NM_015474, intron 6 of 15) intron (NM_015474, intron 6 of 15) 28113 NM_001363733 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 254.5-30 chr5 38420806 38421038 + 2.16667 NA intron (NM_182798, intron 7 of 16) intron (NM_182798, intron 7 of 16) 17381 NM_182798 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 487.668 chr1 36650394 36650676 + 2.16667 NA Intergenic Intergenic -167221 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 263.167-15 chr7 46853816 46853998 + 2.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -156785 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 601.667-3 chr19 15177281 15177704 + 2.16667 NA intron (NM_000435, intron 24 of 32) (GGAT)n|Simple_repeat|Simple_repeat 1858 NR_106853 102465476 NR_106853 ENSG00000275711 MIR6795 hsa-mir-6795 microRNA 6795 ncRNA 436-2 chr18 55455585 55455943 + 2.16667 NA intron (NR_132985, intron 1 of 1) intron (NR_132985, intron 1 of 1) 3231 NR_132985 105372127 Hs.666721 NR_132985 ENSG00000267028 TCF4-AS1 MIR4529HG TCF4 antisense RNA 1 ncRNA 784.334 chr7 104883173 104883811 + 2.16667 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 43153 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 445.834 chr10 7094973 7095239 + 2.16667 NA Intergenic L1MB7|LINE|L1 91678 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 647.834-2 chr14 76916829 76917551 + 2.16667 NA Intergenic Intergenic -42448 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 550.001 chr12 77011704 77012212 + 2.16667 NA Intergenic Charlie2b|DNA|hAT-Charlie 53611 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 304.834-2 chr13 59906657 59906913 + 2.16667 NA intron (NM_001258369, intron 20 of 26) intron (NM_001258369, intron 20 of 26) -105933 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 378.166 chr1 63920650 63921062 + 2.16667 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 146839 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 443.667-8 chr20 7989172 7989780 + 2.16667 NA intron (NM_021156, intron 5 of 7) intron (NM_021156, intron 5 of 7) 30285 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 182.667-21 chr17 35544294 35544437 + 2.16667 NA Intergenic Intergenic -6504 NM_001363830 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 331.667-7 chr17 56815867 56816091 + 2.16667 NA 5' UTR (NM_001085430, exon 5 of 8) 5' UTR (NM_001085430, exon 5 of 8) 17941 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 407.834-7 chr4 180909224 180909432 + 2.16667 NA Intergenic MER74A|LTR|ERVL 249821 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 192 chr1 20479687 20479835 + 2.16667 NA Intergenic MIR|SINE|MIR 6449 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 566.001-2 chr7 122532861 122533295 + 2.16667 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 166039 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 655.999 chr2 24409662 24410138 + 2.16667 NA Intergenic AluSx|SINE|Alu -49364 NM_001348186 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 338.5-9 chr5 34006695 34006979 + 2.16667 NA intron (NR_037951, intron 6 of 8) L2a|LINE|L2 1213 NM_203382 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 524.667-4 chr17 76540700 76541292 + 2.16667 NA intron (NM_001077620, intron 2 of 4) intron (NM_001077620, intron 2 of 4) 952 NM_001077620 768206 Hs.634380 NM_001077620 ENSG00000214140 PRCD RP36 photoreceptor disc component protein-coding 289-9 chr12 74385689 74385973 + 2.16667 NA Intergenic L1MEc|LINE|L1 -93200 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 218.834-5 chr2 167649842 167649969 + 2.16667 NA Intergenic L1MC|LINE|L1 -168767 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 270.334-5 chr13 50411839 50411987 + 2.16667 NA intron (NR_109974, intron 3 of 6) intron (NR_109974, intron 3 of 6) 115536 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 537.001-4 chr7 119944211 119944660 + 2.16667 NA Intergenic L1ME3A|LINE|L1 -37060 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 359-12 chr5 137019975 137020292 + 2.16667 NA intron (NM_004598, intron 6 of 10) L1ME3D|LINE|L1 -108064 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 586.666 chr3 156151592 156152418 + 2.16667 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) 9043 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 261.667-13 chr15 67108818 67108941 + 2.16667 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -16837 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 280.167-14 chr8 54014472 54014633 + 2.16667 NA intron (NM_006756, intron 1 of 9) intron (NM_006756, intron 1 of 9) 7896 NR_109901 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 492.166 chr4 91116864 91117488 + 2.16667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 882145 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 379.167-10 chr6 93759763 93759942 + 2.16667 NA intron (NR_015362, intron 7 of 9) intron (NR_015362, intron 7 of 9) 41549 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 213.167-9 chr14 100417581 100417722 + 2.16667 NA intron (NM_001350949, intron 2 of 6) intron (NM_001350949, intron 2 of 6) 41166 NM_001350947 79446 Hs.497599 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 554.501 chr4 141158197 141158653 + 2.16667 NA Intergenic Intergenic -24956 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 358.667-11 chr8 111028113 111028484 + 2.16667 NA promoter-TSS (NR_125417) promoter-TSS (NR_125417) -865 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 954.501 chr9 92765063 92765972 + 2.16667 NA promoter-TSS (NM_015250) promoter-TSS (NM_015250) -684 NM_015250 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|SMALED2A|SMALED2B|bA526D8.1 BICD cargo adaptor 2 protein-coding 286.334 chr10 18078892 18079108 + 2.16667 NA Intergenic MER34A|LTR|ERV1 -61424 NM_201571 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 268.5-10 chr12 25758175 25758399 + 2.16667 NA Intergenic L1MEc|LINE|L1 -109709 NM_001145727 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 637.334 chr11 119373944 119374566 + 2.16667 NA intron (NM_004205, intron 1 of 12) intron (NM_004205, intron 1 of 12) 7435 NM_004205 9099 Hs.524085 NM_004205 ENSG00000036672 USP2 UBP41|USP9 ubiquitin specific peptidase 2 protein-coding 267.666-6 chr3 82840713 82840918 + 2.16667 NA Intergenic L1MA9|LINE|L1 854673 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 170.167-21 chr17 68035361 68035468 + 2.16667 NA promoter-TSS (NM_002266) promoter-TSS (NM_002266) -321 NM_002266 3838 Hs.594238 NM_002266 ENSG00000182481 KPNA2 IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha karyopherin subunit alpha 2 protein-coding 404.334 chr1 106068846 106069204 + 2.16667 NA Intergenic Intergenic -40772 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 581.667-7 chr8 131230078 131230645 + 2.16667 NA Intergenic Intergenic -189452 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 176.5-29 chr4 165877851 165877985 + 2.16667 NA intron (NM_001204760, intron 1 of 9) intron (NM_001204760, intron 1 of 9) 4681 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 359.001 chr10 44782247 44782416 + 2.16667 NA Intergenic L1MA4|LINE|L1 -128985 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 301.834-7 chr19 34442518 34442861 + 2.16667 NA intron (NM_005499, intron 6 of 16) AluSq|SINE|Alu 14308 NM_005499 10054 Hs.631580 NM_005499 ENSG00000126261 UBA2 ARX|HRIHFB2115|SAE2 ubiquitin like modifier activating enzyme 2 protein-coding 243.501 chr18 80243642 80243811 + 2.16667 NA intron (NM_032510, intron 1 of 2) intron (NM_032510, intron 1 of 2) 3788 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 409.334-2 chr12 15337324 15337643 + 2.16667 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 14975 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 467 chr11 10752825 10753347 + 2.16667 NA intron (NM_014633, intron 2 of 24) intron (NM_014633, intron 2 of 24) 1840 NM_014633 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 413.833-2 chr2 142640620 142641081 + 2.16667 NA Intergenic Charlie2a|DNA|hAT-Charlie -236814 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 872.834 chr8 60396385 60397273 + 2.16667 NA Intergenic Intergenic 16989 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 345-14 chr3 39288486 39288815 + 2.16667 NA Intergenic Intergenic -6915 NM_001171174 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 514.333-4 chr15 67833835 67834443 + 2.16667 NA TTS (NR_120345) TTS (NR_120345) 4740 NR_120345 101929076 Hs.297340 NR_120345 ENSG00000245719 LOC101929076 - uncharacterized LOC101929076 ncRNA 642.166-3 chrX 44563944 44564390 + 2.16667 NA Intergenic Intergenic -21308 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 468.666 chr4 62043145 62043394 + 2.16667 NA intron (NM_001371343, intron 22 of 23) intron (NM_001371343, intron 22 of 23) 118496 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 225.167-11 chr16 2251641 2251779 + 2.16667 NA promoter-TSS (NM_001919) promoter-TSS (NM_001919) -123 NM_001178029 1632 Hs.403436 NM_001919 ENSG00000167969 ECI1 DCI enoyl-CoA delta isomerase 1 protein-coding 426 chr1 33060649 33061057 + 2.16667 NA Intergenic Intergenic -20300 NM_001350399 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 447.5-5 chr2 218909135 218909686 + 2.16667 NA intron (NR_110238, intron 3 of 4) intron (NR_110238, intron 3 of 4) 21227 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 537.001-5 chr8 42171518 42171849 + 2.16667 NA TTS (NM_001134296) TTS (NM_001134296) 18620 NM_006803 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 906.834 chr1 176843668 176844351 + 2.16667 NA 3' UTR (NM_020318, exon 23 of 23) 3' UTR (NM_020318, exon 23 of 23) 185436 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 251.334-14 chr5 151203601 151203718 + 2.16667 NA intron (NM_015621, intron 2 of 8) (TA)n|Simple_repeat|Simple_repeat -8475 NR_160730 105378230 NR_160730 LOC105378230 - uncharacterized LOC105378230 ncRNA 224.167-27 chr6 34611230 34611335 + 2.16667 NA intron (NM_022758, intron 2 of 3) intron (NM_022758, intron 2 of 3) -54949 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 238.667-10 chr14 71722268 71722445 + 2.16667 NA intron (NM_001354286, intron 18 of 24) L1MC3|LINE|L1 136058 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 505.166 chr18 13235234 13235699 + 2.16667 NA intron (NM_181482, intron 1 of 5) intron (NM_181482, intron 1 of 5) -4077 NR_146617 147276 Hs.675872 NR_146617 ENSG00000279020 C18orf15 HsT3231 chromosome 18 open reading frame 15 (putative) ncRNA 805.5 chr5 1167880 1168557 + 2.16667 NA Intergenic L1M5|LINE|L1 10387 NR_109911 101928857 Hs.593732 NR_109911 ENSG00000249201 CTD-3080P12.3 - uncharacterized LOC101928857 ncRNA 454-7 chr2 69565287 69565763 + 2.16667 NA intron (NM_014911, intron 2 of 21) MIRc|SINE|MIR -45354 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 188.167-20 chr2 224936557 224936647 + 2.16667 NA intron (NM_014689, intron 1 of 55) L1ME4a|LINE|L1 10447 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 170-7 chr11 31045482 31045583 + 2.16667 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) -52846 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 502.5-4 chr2 165440313 165440795 + 2.16667 NA Intergenic Intergenic -29144 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 519.334-3 chr7 78958808 78959291 + 2.16667 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -49939 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 536.5-3 chr20 59936095 59936573 + 2.16667 NA TTS (NM_006242) TTS (NM_006242) 2555 NM_001190826 63939 Hs.54973 NM_022106 ENSG00000196227 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217 member B protein-coding 233.834-6 chr5 117361760 117361923 + 2.16667 NA Intergenic Intergenic -53671 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 302.834 chr1 231058043 231058309 + 2.16667 NA Intergenic Intergenic -17922 NM_198552 375061 Hs.38516 NM_198552 ENSG00000182118 FAM89A C1orf153 family with sequence similarity 89 member A protein-coding 384.333-3 chr13 90867372 90867895 + 2.16667 NA Intergenic Intergenic 58964 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 638.668 chr18 73068000 73068393 + 2.16667 NA Intergenic Charlie1|DNA|hAT-Charlie 196302 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 423.5-10 chr8 111907540 111907902 + 2.16667 NA Intergenic Intergenic 531082 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 225.667-8 chr12 128049026 128049180 + 2.16667 NA Intergenic Intergenic -21937 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 641.333-4 chr5 105481904 105482447 + 2.16667 NA Intergenic Intergenic 382701 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 460-2 chr10 23068145 23069114 + 2.16667 NA Intergenic Intergenic -26950 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 357.834-5 chr2 45396362 45396558 + 2.16667 NA intron (NM_018079, intron 19 of 20) intron (NM_018079, intron 19 of 20) -141519 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 269.167-19 chr9 97487271 97487424 + 2.16667 NA intron (NM_001302884, intron 15 of 15) intron (NM_001302884, intron 15 of 15) -13833 NM_001166116 7111 Hs.404289 NM_003275 ENSG00000136842 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 917.666 chr11 14536797 14537509 + 2.16667 NA intron (NM_148976, intron 2 of 10) intron (NM_148976, intron 2 of 10) -16708 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 262.334-15 chr7 47762992 47763315 + 2.16667 NA intron (NR_038407, intron 1 of 2) intron (NR_038407, intron 1 of 2) 1677 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 879.334 chrX 74550037 74551374 + 2.16667 NA Intergenic AluSx|SINE|Alu 63919 NM_183353 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 410.501 chr15 61084528 61084790 + 2.16667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 144643 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 736.167 chr21 19507462 19508111 + 2.16667 NA Intergenic L1MA4|LINE|L1 391969 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 282.334-4 chr17 56405102 56405391 + 2.16667 NA intron (NM_001370326, intron 8 of 20) L1ME4b|LINE|L1 -188453 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 610.501-2 chr2 171017062 171017649 + 2.16667 NA intron (NM_001136555, intron 10 of 18) intron (NM_001136555, intron 10 of 18) 49618 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 618.668 chr4 69825184 69825496 + 2.16667 NA Intergenic LTR12_|LTR|ERV1 34805 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 214.167-33 chr8 94500407 94500556 + 2.16667 NA intron (NM_015496, intron 16 of 23) intron (NM_015496, intron 16 of 23) -25366 NM_012415 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B protein-coding 453-2 chr19 47348833 47349311 + 2.16667 NA promoter-TSS (NM_014681) promoter-TSS (NM_014681) -243 NM_014681 9704 Hs.151706 NM_014681 ENSG00000134815 DHX34 DDX34|HRH1 DExH-box helicase 34 protein-coding 436.167-5 chr20 31615515 31615811 + 2.16667 NA Intergenic L1ME3D|LINE|L1 8477 NR_036161 100422904 NR_036161 ENSG00000264395 MIR3193 - microRNA 3193 ncRNA 542.834 chr3 159884744 159885194 + 2.16667 NA intron (NM_001197113, intron 6 of 10) intron (NM_001197113, intron 6 of 10) 45108 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 295.333-24 chr9 97482304 97482553 + 2.16667 NA intron (NM_001302884, intron 13 of 15) intron (NM_001302884, intron 13 of 15) -18752 NM_001166116 7111 Hs.404289 NM_003275 ENSG00000136842 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 270.167-6 chr12 89712998 89713168 + 2.16667 NA Intergenic Intergenic -3717 NM_001366520 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 552.667-2 chr14 35215241 35215752 + 2.16667 NA intron (NM_014672, intron 5 of 7) intron (NM_014672, intron 5 of 7) -63062 NM_001282234 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 258-33 chr7 32868216 32868458 + 2.16667 NA 3' UTR (NM_015483, exon 4 of 4) 3' UTR (NM_015483, exon 4 of 4) 23423 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 450.667-3 chr3 11111508 11111880 + 2.16667 NA Intergenic L1MEf|LINE|L1 -25544 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 416.5-7 chr6 79974790 79975089 + 2.16667 NA Intergenic MER63A|DNA|hAT-Blackjack -27386 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 309.5-19 chr7 46193629 46193913 + 2.16667 NA Intergenic L1MC|LINE|L1 -272499 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 773.667 chr2 127324452 127325280 + 2.16667 NA intron (NM_006609, intron 8 of 15) intron (NM_006609, intron 8 of 15) 18363 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 621.333 chr18 3248011 3248997 + 2.16667 NA intron (NM_006471, intron 1 of 3) intron (NM_006471, intron 1 of 3) 974 NM_001303047 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 283.834-8 chr7 30974778 30975050 + 2.16667 NA intron (NM_000823, intron 8 of 12) intron (NM_000823, intron 8 of 12) 10961 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 412.667 chr11 15988918 15989197 + 2.16667 NA exon (NM_001367872, exon 15 of 17) exon (NM_001367872, exon 15 of 17) -19436 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 390-6 chr19 46800805 46801187 + 2.16667 NA Intergenic A-rich|Low_complexity|Low_complexity -12402 NM_005628 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 222.667-6 chr10 121014004 121014168 + 2.16667 NA Intergenic L1MC1|LINE|L1 162724 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 750.167-3 chr2 224368990 224369622 + 2.16667 NA Intergenic Intergenic 32688 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 341.5-2 chr1 53969953 53970200 + 2.16667 NA Intergenic MER33|DNA|hAT-Charlie 23726 NM_052940 115353 Hs.40094 NM_052940 ENSG00000116212 LRRC42 dJ167A19.4 leucine rich repeat containing 42 protein-coding 559.334-2 chr12 70729861 70730436 + 2.16667 NA intron (NM_130846, intron 2 of 9) intron (NM_130846, intron 2 of 9) 24460 NM_130846 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 296.833-6 chr17 43309925 43310289 + 2.16667 NA Intergenic AluJr4|SINE|Alu -9876 NR_002716 6066 NR_002716 ENSG00000274585 RNU2-1 RNU2|U2 RNA, U2 small nuclear 1 snRNA 343.5-16 chr9 36094395 36094670 + 2.16667 NA intron (NM_021111, intron 10 of 20) L1MA8|LINE|L1 -42004 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 294.667-9 chr11 96565164 96565329 + 2.16667 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 56821 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 249.334-7 chr5 110525667 110525825 + 2.16667 NA intron (NM_001039763, intron 12 of 13) L1ME4b|LINE|L1 -11831 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 327.833-8 chr4 47755660 47755864 + 2.16667 NA intron (NM_006587, intron 4 of 21) intron (NM_006587, intron 4 of 21) -75583 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 552.5 chr3 67113547 67114301 + 2.16667 NA Intergenic Intergenic -111540 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 498-4 chr14 88611623 88612048 + 2.16667 NA TTS (NM_183387) TTS (NM_183387) 17415 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 197-35 chr7 85594919 85595026 + 2.16667 NA Intergenic Intergenic 173850 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 1755.67-3 chr5 42005097 42006621 + 2.16667 NA Intergenic Intergenic 80578 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 376.333-5 chr11 124415123 124416007 + 2.16667 NA Intergenic Intergenic 9306 NM_001005196 283162 Hs.553671 NM_001005196 ENSG00000280090 OR8B4 OR11-315|OR8B4P olfactory receptor family 8 subfamily B member 4 (gene/pseudogene) protein-coding 588-3 chr5 129860347 129860940 + 2.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -43822 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 356.667-6 chr16 58097354 58097730 + 2.16667 NA Intergenic Intergenic 31839 NM_013242 29105 Hs.532755 NM_013242 ENSG00000070761 CFAP20 BUG22|C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 420.999-2 chr8 137980920 137981290 + 2.16667 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 102440 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 309-20 chr5 124380592 124380800 + 2.16667 NA intron (NR_125774, intron 4 of 5) LTR88b|LTR|Gypsy? 57824 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 170.667-60 chr9 123974702 123974829 + 2.16667 NA Intergenic Intergenic 34631 NR_135129 100505588 Hs.547168 NR_135129 ENSG00000236668 LOC100505588 - uncharacterized LOC100505588 ncRNA 371.5-2 chr10 111110192 111110543 + 2.16667 NA Intergenic L1ME4b|LINE|L1 -3924 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 565.667-3 chr9 35729342 35729962 + 2.16667 NA intron (NM_006289, intron 1 of 56) intron (NM_006289, intron 1 of 56) 2543 NM_006289 7094 Hs.471014 NM_006289 ENSG00000137076 TLN1 ILWEQ|TLN|talin-1 talin 1 protein-coding 284.667-21 chrX 98784774 98784994 + 2.16667 NA Intergenic L1ME3G|LINE|L1 -1220349 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 405.667-7 chr6 24666920 24667192 + 2.16667 NA promoter-TSS (NM_016614) promoter-TSS (NM_016614) 21 NM_001160094 55856 Hs.731605 NM_018473 ENSG00000112304 ACOT13 HT012|PNAS-27|THEM2 acyl-CoA thioesterase 13 protein-coding 382.167-2 chr12 103877871 103878518 + 2.16667 NA intron (NR_027249, intron 9 of 15) intron (NR_027249, intron 9 of 15) -36960 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 265.833-10 chr2 68078995 68079181 + 2.16667 NA Intergenic Tigger18a|DNA|TcMar-Tigger -16084 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 360.834-8 chr3 192376078 192376323 + 2.16667 NA intron (NM_004113, intron 2 of 5) L1MEd|LINE|L1 32849 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 225.167-27 chr4 176099496 176099635 + 2.16667 NA intron (NM_170710, intron 2 of 30) L1MC2|LINE|L1 33724 NM_181265 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 360-5 chr15 74950547 74950802 + 2.16667 NA Intergenic Intergenic 6760 NM_017793 54913 Hs.8562 NM_017793 ENSG00000178718 RPP25 - ribonuclease P and MRP subunit p25 protein-coding 580.5 chr1 209989375 209990141 + 2.16667 NA intron (NM_001146261, intron 3 of 9) intron (NM_001146261, intron 3 of 9) 51541 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 501.5-7 chr8 94822568 94823152 + 2.16667 NA promoter-TSS (NM_017864) promoter-TSS (NM_017864) -427 NM_017864 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 399.667-4 chr3 69026959 69027519 + 2.16667 NA intron (NM_007114, intron 13 of 16) AluSz6|SINE|Alu -13555 NM_173654 285203 Hs.518059 NM_173654 ENSG00000163378 EOGT AER61|AOS4|C3orf64|EOGT1 EGF domain specific O-linked N-acetylglucosamine transferase protein-coding 260.167-8 chr12 121839499 121839698 + 2.16667 NA TTS (NM_001171993) TTS (NM_001171993) 19261 NM_002150 3242 Hs.2899 NM_002150 ENSG00000158104 HPD 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD 4-hydroxyphenylpyruvate dioxygenase protein-coding 343.667-15 chr5 103582329 103582520 + 2.16667 NA Intergenic Intergenic -19635 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 494.334 chr2 12532806 12533245 + 2.16667 NA intron (NR_110196, intron 4 of 5) L3|LINE|CR1 -183847 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 785.001-2 chr8 39989371 39990224 + 2.16667 NA exon (NM_194294, exon 8 of 11) exon (NM_194294, exon 8 of 11) 54842 NM_194294 169355 Hs.676257 NM_194294 ENSG00000188676 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 399.334-2 chr17 58776233 58776504 + 2.16667 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 20499 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 506.5-3 chr3 14673522 14674038 + 2.16667 NA Intergenic Intergenic -1361 NM_001184957 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 371.5 chr10 91297662 91297988 + 2.16667 NA Intergenic Intergenic 77162 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 633.5-2 chr17 48262902 48263422 + 2.16667 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -31185 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 532.833-3 chr8 28889934 28890398 + 2.16667 NA promoter-TSS (NM_001324393) promoter-TSS (NM_001324393) 15 NM_001145159 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 329.5-18 chr6 80011685 80011972 + 2.16667 NA intron (NM_003318, intron 7 of 21) intron (NM_003318, intron 7 of 21) 7179 NM_003318 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 559.166 chr6 130743047 130743606 + 2.16667 NA Intergenic Intergenic -84079 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 314.167-10 chr2 197775634 197775815 + 2.16667 NA exon (NM_001284362, exon 5 of 11) exon (NM_001284362, exon 5 of 11) 9595 NM_033030 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 424.5-2 chr10 50202776 50203039 + 2.16667 NA exon (NM_019893, exon 15 of 20) exon (NM_019893, exon 15 of 20) 45703 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 397-8 chr2 221833678 221833942 + 2.16667 NA Intergenic Intergenic -259608 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 703.167 chr7 33895276 33895795 + 2.16667 NA Intergenic Intergenic -9380 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 1033.5-3 chr5 141320039 141320857 + 2.16667 NA 5' UTR (NM_005642, exon 1 of 1) 5' UTR (NM_005642, exon 1 of 1) 336 NM_005642 6879 Hs.438838 NM_005642 ENSG00000178913 TAF7 TAF2F|TAFII55 TATA-box binding protein associated factor 7 protein-coding 489.667-3 chr4 76758971 76759301 + 2.16667 NA intron (NM_020859, intron 8 of 10) intron (NM_020859, intron 8 of 10) 139008 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 435.667-2 chr16 89678028 89678245 + 2.16667 NA Intergenic AluYj4|SINE|Alu -8553 NM_001098533 8558 Hs.699177 NM_003674 ENSG00000185324 CDK10 ALSAS|PISSLRE cyclin dependent kinase 10 protein-coding 393.167 chr1 86234281 86235039 + 2.16667 NA Intergenic MER47A|DNA|TcMar-Tigger -77676 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 326.667-9 chr5 130514907 130515154 + 2.16667 NA Intergenic Intergenic 610565 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 384.334-6 chr9 71806793 71807049 + 2.16667 NA Intergenic Intergenic -38408 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 679 chr17 82037186 82037784 + 2.16667 NA promoter-TSS (NR_159948) promoter-TSS (NR_159948) 212 NM_001195218 51181 Hs.9857 NM_016286 ENSG00000169738 DCXR DCR|HCR2|HCRII|KIDCR|P34H|PNTSU|SDR20C1|XR dicarbonyl and L-xylulose reductase protein-coding 367.5-8 chr7 49715515 49715814 + 2.16667 NA Intergenic Intergenic -57974 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 482.667 chr14 94549390 94550092 + 2.16667 NA Intergenic MER5A|DNA|hAT-Charlie -11701 NM_001289032 5267 Hs.719893 NM_006215 ENSG00000100665 SERPINA4 KAL|KLST|KST|PI-4|PI4|kallistatin serpin family A member 4 protein-coding 571.501 chr21 27705869 27706212 + 2.16667 NA Intergenic L1PA8|LINE|L1 -16339 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 432.167-2 chr18 22392990 22393326 + 2.16667 NA Intergenic LTR16E1|LTR|ERVL 24757 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 429.666-4 chr3 95596332 95596697 + 2.16667 NA Intergenic L1P4|LINE|L1 86679 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 216.833-11 chr17 56354533 56354730 + 2.16667 NA intron (NM_001370326, intron 6 of 20) L2a|LINE|L2 201156 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 298.667-16 chr22 25426935 25427361 + 2.16667 NA Intergenic Intergenic -20939 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 216.833-17 chr2 209496096 209496327 + 2.16667 NA intron (NM_001039538, intron 1 of 14) L2c|LINE|L2 72164 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 556.001 chr14 49185924 49186513 + 2.16667 NA Intergenic L1M3a|LINE|L1 400162 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 471.5-4 chr3 142125960 142126549 + 2.16667 NA intron (NM_001178139, intron 1 of 12) AluSc|SINE|Alu 23290 NM_001178138 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 173.5-23 chr15 43376196 43376514 + 2.16667 NA intron (NM_014444, intron 2 of 17) intron (NM_014444, intron 2 of 17) 5254 NM_001286414 27229 Hs.584887 NM_014444 ENSG00000137822 TUBGCP4 76P|GCP-4|GCP4|Grip76|MCCRP3 tubulin gamma complex associated protein 4 protein-coding 303.334-6 chr14 62233108 62233388 + 2.16667 NA Intergenic L1M4|LINE|L1 -93275 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 300.667-6 chr17 50012353 50012625 + 2.16667 NA Intergenic L1MD|LINE|L1 -17265 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 484.834 chr2 115048873 115049219 + 2.16667 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -15527 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 487.834-2 chr15 61591817 61592235 + 2.16667 NA Intergenic MER20|DNA|hAT-Charlie -137892 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 613.999 chr10 64626356 64626743 + 2.16667 NA Intergenic Intergenic -198979 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 539.001 chr6 47043839 47044189 + 2.16667 NA Intergenic Intergenic -1682 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 412.667-5 chr19 40758229 40758596 + 2.16667 NA intron (NM_004596, intron 2 of 5) intron (NM_004596, intron 2 of 5) 7209 NM_004596 6626 Hs.466775 NM_004596 ENSG00000077312 SNRPA Mud1|U1-A|U1A small nuclear ribonucleoprotein polypeptide A protein-coding 366.667-3 chr20 60163489 60163791 + 2.16667 NA intron (NR_046099, intron 2 of 4) L1MC5|LINE|L1 25148 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 236.167-15 chr7 14107827 14108047 + 2.16667 NA Intergenic MLT1F1|LTR|ERVL-MaLR -116512 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 536.834-2 chr14 71319899 71320395 + 2.16667 NA promoter-TSS (NM_001354287) promoter-TSS (NM_001354287) -329 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 550.501-2 chr18 74476399 74476943 + 2.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -19403 NM_001044369 125704 Hs.371690 NM_001044369 ENSG00000187773 DIPK1C C18orf51|FAM69C divergent protein kinase domain 1C protein-coding 391.833-9 chr5 57138235 57138525 + 2.16667 NA Intergenic Intergenic -35568 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 463.833-2 chr15 98498090 98498481 + 2.16667 NA intron (NM_182562, intron 2 of 6) L1MA5|LINE|L1 16051 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 503.667 chr4 53490971 53491430 + 2.16667 NA intron (NM_001126328, intron 6 of 10) intron (NM_001126328, intron 6 of 10) -8877 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 499.834 chr10 34145963 34146349 + 2.16667 NA intron (NM_001184789, intron 20 of 22) L1M7|LINE|L1 -373476 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 632.334 chr7 24587612 24588259 + 2.16667 NA intron (NM_001303037, intron 1 of 11) intron (NM_001303037, intron 1 of 11) 14483 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 656.167 chr10 37356948 37357422 + 2.16667 NA Intergenic Intergenic 47999 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 433.001-2 chr4 41212744 41213024 + 2.16667 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 1658 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 227.5-20 chr22 24525609 24525845 + 2.16667 NA exon (NM_016327, exon 10 of 10) exon (NM_016327, exon 10 of 10) 29411 NM_001284257 83606 Hs.9850 NM_031444 ENSG00000138867 GUCD1 C22orf13|LLN4 guanylyl cyclase domain containing 1 protein-coding 324.667-12 chr17 74664616 74664781 + 2.16667 NA Intergenic Intergenic -6433 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 213.834-4 chr11 119121341 119121563 + 2.16667 NA promoter-TSS (NM_001351964) promoter-TSS (NM_001351964) -71 NM_001243259 25988 Hs.504091 NM_015517 ENSG00000172273 HINFP HiNF-P|MIZF|ZNF743 histone H4 transcription factor protein-coding 381.333 chr12 24836341 24836638 + 2.16667 NA intron (NM_001178091, intron 7 of 9) intron (NM_001178091, intron 7 of 9) 65733 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 458.167 chr10 112556237 112556506 + 2.16667 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -77799 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 406-7 chr5 7490034 7490298 + 2.16667 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 94028 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 599.667-3 chr3 185460452 185461122 + 2.16667 NA intron (NM_004721, intron 7 of 13) intron (NM_004721, intron 7 of 13) 38248 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 229.833-3 chr1 229243424 229243653 + 2.16667 NA Intergenic Intergenic -27524 NR_073545 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 373.167-6 chr21 42145652 42145949 + 2.16667 NA Intergenic Intergenic -37266 NR_027243 150147 Hs.558646 NM_152507 ENSG00000184385 UMODL1-AS1 C21orf128 UMODL1 antisense RNA 1 ncRNA 461.834-3 chr20 45126746 45127116 + 2.16667 NA Intergenic L1MB1|LINE|L1 -2466 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 293-26 chr8 134249998 134250281 + 2.16667 NA Intergenic Intergenic -347932 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 449.167-4 chr6 133553831 133554254 + 2.16667 NA intron (NR_109982, intron 5 of 8) L1PA8|LINE|L1 -267105 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 719.334-2 chr12 52083844 52084313 + 2.16667 NA promoter-TSS (NR_120438) promoter-TSS (NR_120438) -668 NR_120439 26628 Hs.524431 NR_120438 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 434-5 chr16 22977271 22977651 + 2.16667 NA Intergenic MIRb|SINE|MIR 163299 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 455.834-2 chr7 30982961 30983181 + 2.16667 NA Intergenic (GTTAGTA)n|Simple_repeat|Simple_repeat 19118 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 470.5-2 chr10 118182806 118183143 + 2.16667 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -136033 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 442.167-2 chr18 6711321 6711714 + 2.16667 NA Intergenic Intergenic -18199 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 377.5 chr1 81793196 81793384 + 2.16667 NA intron (NM_001366008, intron 4 of 26) intron (NM_001366008, intron 4 of 26) -7086 NM_001350699 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 520.333-2 chr8 106129363 106129620 + 2.16667 NA Intergenic Intergenic -68988 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 202.5-23 chr15 81238303 81238482 + 2.16667 NA intron (NM_001352686, intron 2 of 18) L1ME3D|LINE|L1 38916 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 235.5 chr1 67298790 67299026 + 2.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -8456 NM_001559 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 785 chr7 45154515 45155251 + 2.16667 NA Intergenic Intergenic -2908 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 206.667-32 chr20 7057010 7057251 + 2.16667 NA Intergenic Intergenic 197072 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 536.167-3 chr2 139326479 139326777 + 2.16667 NA Intergenic Intergenic 429304 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 589.167-4 chr15 73972735 73973544 + 2.16667 NA Intergenic Intergenic 19156 NM_004809 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 485.501 chr22 50370033 50370371 + 2.16667 NA intron (NM_001242899, intron 1 of 22) intron (NM_001242899, intron 1 of 22) 26875 NM_001351648 9701 Hs.449098 NM_014678 ENSG00000100239 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6 regulatory subunit 2 protein-coding 688.167-3 chr8 61613674 61614360 + 2.16667 NA intron (NM_004318, intron 14 of 24) intron (NM_004318, intron 14 of 24) 75794 NM_032468 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 303.334-4 chr11 76569931 76570166 + 2.16667 NA Intergenic L1MC3|LINE|L1 99890 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 382-2 chr10 33641498 33641868 + 2.16667 NA Intergenic L1ME3B|LINE|L1 130997 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 313-4 chr2 102840902 102841723 + 2.16667 NA Intergenic Intergenic 54410 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 351.834 chr4 92926536 92926726 + 2.16667 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 622232 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 766.333 chr1 246689400 246689944 + 2.16667 NA Intergenic LTR41|LTR|ERVL -34737 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 266.834-2 chr14 50628236 50628618 + 2.16667 NA exon (NM_001127713, exon 13 of 14) exon (NM_001127713, exon 13 of 14) 39879 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 244.5-7 chr13 106817495 106817671 + 2.16667 NA Intergenic L1ME2z|LINE|L1 163703 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 300 chr1 57512080 57512242 + 2.16667 NA intron (NM_001353980, intron 4 of 5) MIR|SINE|MIR -87240 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 281.334 chr1 28921197 28921376 + 2.16667 NA intron (NM_001166006, intron 1 of 14) intron (NM_001166006, intron 1 of 14) 6710 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 380.667-3 chr2 207337781 207338056 + 2.16667 NA Intergenic Intergenic -68494 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 215.5-3 chr15 71438165 71438415 + 2.16667 NA intron (NM_024817, intron 6 of 16) L1M5|LINE|L1 -108946 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 527.001 chr2 199704532 199705012 + 2.16667 NA Intergenic L1MC4|LINE|L1 96704 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 248.167-20 chr5 177535497 177535762 + 2.16667 NA intron (NM_001366500, intron 4 of 9) L1ME4a|LINE|L1 18466 NM_001366500 54540 Hs.484289 NM_019057 ENSG00000146067 FAM193B IRIZIO family with sequence similarity 193 member B protein-coding 361.667-17 chrX 20530272 20530463 + 2.16667 NA Intergenic Intergenic -263458 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 442.501 chr22 31452585 31452957 + 2.16667 NA intron (NM_001164502, intron 8 of 16) intron (NM_001164502, intron 8 of 16) 36785 NM_001164501 56478 Hs.517559 NM_019843 ENSG00000184708 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 242.5-32 chr3 98121878 98121997 + 2.16667 NA Intergenic L1MA8|LINE|L1 -10761 NM_001005338 26341 Hs.537383 NM_001005338 ENSG00000231192 OR5H1 HSHTPCRX14|HTPCRX14 olfactory receptor family 5 subfamily H member 1 protein-coding 440.5-5 chr6 160930819 160931518 + 2.16667 NA Intergenic CpG -60559 NM_001291958 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 196-33 chr3 160032133 160032416 + 2.16667 NA TTS (NR_104132) TTS (NR_104132) 11625 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 427.166 chr2 73154287 73154645 + 2.16667 NA Intergenic L1MEd|LINE|L1 -41518 NM_001371272 1025.83-2 chr11 119356006 119356898 + 2.16667 NA 3' UTR (NM_004205, exon 13 of 13) 3' UTR (NM_004205, exon 13 of 13) 7756 NM_171997 9099 Hs.524085 NM_004205 ENSG00000036672 USP2 UBP41|USP9 ubiquitin specific peptidase 2 protein-coding 629.833 chr1 16363321 16363838 + 2.16667 NA Intergenic Intergenic -3663 NM_001114600 26099 Hs.252967 NM_001114600 ENSG00000055070 SZRD1 C1orf144 SUZ RNA binding domain containing 1 protein-coding 313.833-6 chr2 73831201 73831482 + 2.16667 NA intron (NR_148670, intron 3 of 12) intron (NR_148670, intron 3 of 12) 2374 NM_001353968 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 264-30 chr8 56027600 56027868 + 2.16667 NA Intergenic Intergenic 46167 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 611.167 chr1 9266938 9267661 + 2.16667 NA 3' UTR (NM_004285, exon 5 of 5) 3' UTR (NM_004285, exon 5 of 5) -25595 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 410-8 chr3 97691036 97691382 + 2.16667 NA intron (NM_001080448, intron 14 of 17) L1MB8|LINE|L1 -73312 NM_177976 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 815.334 chr10 101780875 101781542 + 2.16667 NA promoter-TSS (NM_001206389) promoter-TSS (NM_001206389) -839 NM_001206389 2253 Hs.57710 NM_006119 ENSG00000107831 FGF8 AIGF|FGF-8|HBGF-8|HH6|KAL6 fibroblast growth factor 8 protein-coding 307.333-16 chr7 114163618 114163928 + 2.16667 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 77446 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 444.333-5 chr5 39514112 39514468 + 2.16667 NA Intergenic Intergenic -6141 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 604.667 chr1 153030660 153031087 + 2.16667 NA promoter-TSS (NM_003125) promoter-TSS (NM_003125) -330 NM_003125 6699 Hs.1076 NM_003125 ENSG00000169469 SPRR1B CORNIFIN|GADD33|SPR-IB|SPRR1 small proline rich protein 1B protein-coding 198.334-4 chr21 33982715 33982836 + 2.16667 NA Intergenic L1MB5|LINE|L1 6393 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 524.667-3 chr17 43734660 43734915 + 2.16667 NA Intergenic Intergenic 24004 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 533 chr1 199733757 199734065 + 2.16667 NA Intergenic Intergenic -293799 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 403.5-4 chr14 42690441 42690770 + 2.16667 NA Intergenic Intergenic 1083749 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 353.834-4 chr19 49677983 49678554 + 2.16667 NA intron (NM_198318, intron 1 of 9) intron (NM_198318, intron 1 of 9) 1116 NM_198318 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 566.667 chr12 20466227 20466844 + 2.16667 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 97290 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 336.167-8 chr8 42195140 42195384 + 2.16667 NA intron (NM_001319189, intron 1 of 11) intron (NM_001319189, intron 1 of 11) 12303 NM_000930 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 422.167-4 chr3 139562334 139562530 + 2.16667 NA intron (NM_001200047, intron 3 of 3) intron (NM_001200047, intron 3 of 3) -22690 NM_002899 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 850 chr11 66327887 66329037 + 2.16667 NA Intergenic Intergenic 7972 NM_004292 9610 Hs.1030 NM_004292 ENSG00000174791 RIN1 - Ras and Rab interactor 1 protein-coding 382.167-11 chr8 64451438 64451777 + 2.16667 NA Intergenic Intergenic 72458 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 374.834 chr11 83045929 83046118 + 2.16667 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) -4425 NR_033347 100379250 Hs.725115 NR_033347 ENSG00000207221 SNORA70E U70E small nucleolar RNA, H/ACA box 70E snoRNA 251-20 chr21 27026615 27026852 + 2.16667 NA Intergenic MLT2B1|LTR|ERVL -59645 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 332.001-2 chr19 5048162 5048394 + 2.16667 NA intron (NM_001370094, intron 6 of 10) intron (NM_001370094, intron 6 of 10) 79165 NM_015015 23030 Hs.654816 NM_015015 ENSG00000127663 KDM4B JMJD2B|TDRD14B lysine demethylase 4B protein-coding 305.334-5 chr11 65823643 65824026 + 2.16667 NA Intergenic Intergenic -10129 NM_152760 254122 Hs.591950 NM_152760 ENSG00000172803 SNX32 SNX6B sorting nexin 32 protein-coding 340.834-11 chrX 26649382 26649711 + 2.16667 NA Intergenic HUERS-P3b-int|LTR|ERV1 91209 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 470.667-3 chr17 77536542 77536932 + 2.16667 NA TTS (NR_148967) TTS (NR_148967) 9736 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 586.167 chr12 18224820 18225420 + 2.16667 NA Intergenic Intergenic -36420 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 402.501 chr2 39697125 39697349 + 2.16667 NA intron (NM_152390, intron 1 of 3) intron (NM_152390, intron 1 of 3) 31320 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 733.667 chr11 24386423 24387010 + 2.16667 NA Intergenic Intergenic -110337 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 512.334 chr12 45346044 45346327 + 2.16667 NA intron (NM_001025356, intron 3 of 19) MSTD|LTR|ERVL-MaLR 53495 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 906.667 chr12 81128934 81129686 + 2.16667 NA intron (NM_024560, intron 2 of 15) intron (NM_024560, intron 2 of 15) -29078 NR_039848 100616133 NR_039848 ENSG00000265227 MIR4699 - microRNA 4699 ncRNA 364.167-8 chrX 86601272 86601572 + 2.16667 NA intron (NM_001139515, intron 3 of 11) intron (NM_001139515, intron 3 of 11) 338454 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 444.167 chr11 112652796 112653168 + 2.16667 NA Intergenic Intergenic -97180 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 268.834-6 chr3 190886105 190886469 + 2.16667 NA Intergenic Intergenic 8357 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 488.167-2 chr15 75738651 75739046 + 2.16667 NA intron (NR_024595, intron 2 of 4) CpG-8450 1229 NR_024595 100128285 Hs.604066 NR_024595 DNM1P35 DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88 dynamin 1 pseudogene 35 pseudo 260.5-15 chr19 35160810 35161014 + 2.16667 NA intron (NM_014164, intron 5 of 8) MER103C|DNA|hAT-Charlie 6177 NM_014164 53827 Hs.333418 NM_014164 ENSG00000089327 FXYD5 DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 364.667-17 chr5 78660098 78660753 + 2.16667 NA Intergenic Intergenic -11653 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 480.667-6 chr4 115969173 115969446 + 2.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR -330416 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 366-6 chr16 4790984 4791215 + 2.16667 NA intron (NM_001253790, intron 1 of 4) intron (NM_001253790, intron 1 of 4) 2643 NM_001253791 440335 Hs.390599 NM_001253790 ENSG00000267795 SMIM22 CASIMO1 small integral membrane protein 22 protein-coding 540.667 chr1 206583565 206584083 + 2.16667 NA intron (NM_182665, intron 2 of 4) intron (NM_182665, intron 2 of 4) 26660 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 345.833-6 chr15 55897670 55897944 + 2.16667 NA intron (NM_001329212, intron 5 of 28) intron (NM_001329212, intron 5 of 28) 19324 NM_001284340 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 424.834 chr11 75399414 75399776 + 2.16667 NA promoter-TSS (NM_001260506) promoter-TSS (NM_001260506) 77 NM_001005 6188 Hs.546286 NM_001005 ENSG00000149273 RPS3 S3 ribosomal protein S3 protein-coding 255.167-19 chr2 135530586 135530767 + 2.16667 NA promoter-TSS (NM_015361) promoter-TSS (NM_015361) 54 NM_001286569 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 324.667-22 chr7 76359078 76359479 + 2.16667 NA promoter-TSS (NM_012479) promoter-TSS (NM_012479) -287 NM_012479 7532 Hs.744840 NM_012479 ENSG00000170027 YWHAG 14-3-3GAMMA|EIEE56|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma protein-coding 308.001-4 chr9 103687362 103687631 + 2.16667 NA Intergenic Intergenic -312213 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 556.834 chr4 120448889 120449290 + 2.16667 NA Intergenic Intergenic -382241 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 187.834-9 chr5 114789871 114790004 + 2.16667 NA Intergenic Intergenic -16524 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 647.167 chr17 17281333 17281756 + 2.16667 NA promoter-TSS (NM_001316354) promoter-TSS (NM_001316354) -241 NM_001316358 8533 Hs.6076 NM_003653 ENSG00000141030 COPS3 CSN3|SGN3 COP9 signalosome subunit 3 protein-coding 345.5-7 chr16 74035802 74036023 + 2.16667 NA Intergenic Intergenic 179609 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 305.333-3 chr1 219992383 219992649 + 2.16667 NA intron (NM_004446, intron 18 of 31) MER58A|DNA|hAT-Charlie 53989 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 207.667-48 chr9 79431250 79431582 + 2.16667 NA Intergenic Intergenic -140357 NM_001282753 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 469.833-2 chr13 110220956 110221508 + 2.16667 NA intron (NM_001845, intron 2 of 51) intron (NM_001845, intron 2 of 51) 85925 NM_001845 1282 Hs.17441 NM_001845 ENSG00000187498 COL4A1 BSVD|BSVD1|RATOR collagen type IV alpha 1 chain protein-coding 313.167-11 chr4 38675493 38675785 + 2.16667 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -11011 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 544.167-6 chr8 115451987 115452268 + 2.16667 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 215886 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 322-10 chr5 122118625 122118873 + 2.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR -10797 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 516.5 chr12 117236025 117236721 + 2.16667 NA intron (NM_001204213, intron 19 of 27) intron (NM_001204213, intron 19 of 27) -45903 NM_015002 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 500.334-3 chr12 121697257 121697715 + 2.16667 NA Intergenic AluSx1|SINE|Alu -15266 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 531.001 chr6 96382971 96383372 + 2.16667 NA Intergenic Intergenic -138635 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 200.333-16 chr17 58569854 58570026 + 2.16667 NA intron (NM_031272, intron 25 of 31) L1ME4a|LINE|L1 -25612 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 328.501-2 chr14 59374312 59374557 + 2.16667 NA Intergenic Intergenic 90946 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 545.333 chr12 95582392 95582881 + 2.16667 NA Intergenic Intergenic -31160 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 253.833-6 chr2 213238216 213238505 + 2.16667 NA Intergenic Intergenic 45849 NR_161186 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 375.667-4 chr12 91332580 91332959 + 2.16667 NA Intergenic Intergenic -149952 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 217.167-13 chr17 34430051 34430187 + 2.16667 NA Intergenic L2a|LINE|L2 -66886 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 416.5-2 chr11 119614905 119615132 + 2.16667 NA Intergenic LTR37A|LTR|ERV1 114182 NM_002855 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 315.667-10 chr14 47569711 47569986 + 2.16667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 105106 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 333.167-5 chr8 48743958 48744217 + 2.16667 NA Intergenic L1ME1|LINE|L1 -8776 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 258.834-8 chr4 169046499 169046650 + 2.16667 NA Intergenic AluSx1|SINE|Alu -36319 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 387.167-4 chr2 160241751 160241950 + 2.16667 NA Intergenic Intergenic 30045 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 393.499-2 chr21 20980997 20981311 + 2.16667 NA Intergenic L1MA5|LINE|L1 -17255 NM_001352593 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 680.001 chr1 214446394 214447118 + 2.16667 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 104846 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 369-15 chr9 77488361 77488736 + 2.16667 NA intron (NR_121184, intron 2 of 4) L1M3f|LINE|L1 40899 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 342.001-3 chr3 187211167 187211391 + 2.16667 NA Intergenic Intergenic -3650 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 302.5-21 chr9 22112601 22112891 + 2.16667 NA intron (NR_047535, intron 5 of 7) intron (NR_047535, intron 5 of 7) -103433 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 439.167 chr1 180416236 180416620 + 2.16667 NA intron (NM_032360, intron 4 of 7) intron (NM_032360, intron 4 of 7) 21962 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 920.167-3 chr6 10759346 10760203 + 2.16667 NA TTS (NM_001286488) TTS (NM_001286488) 11969 NM_030969 81853 Hs.95600 NM_030969 ENSG00000137210 TMEM14B - transmembrane protein 14B protein-coding 205.167-13 chr2 134819405 134819568 + 2.16667 NA Intergenic Intergenic -19130 NM_001307983 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 431.834 chr12 44738945 44739224 + 2.16667 NA intron (NM_006159, intron 10 of 20) L2c|LINE|L2 136577 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 331.5-7 chr17 40658567 40659054 + 2.16667 NA intron (NM_152349, intron 3 of 5) intron (NM_152349, intron 3 of 5) 6367 NM_152349 125113 Hs.6920 NM_152349 ENSG00000213424 KRT222 KA21|KRT222P keratin 222 protein-coding 425-9 chr6 165265220 165265710 + 2.16667 NA Intergenic Intergenic 44140 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 488.834-2 chr6 75846171 75846504 + 2.16667 NA intron (NM_001300899, intron 10 of 32) intron (NM_001300899, intron 10 of 32) 97098 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 380.667-9 chr8 55319618 55319865 + 2.16667 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 135580 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 624.334 chr1 179882487 179883068 + 2.16667 NA exon (NM_015602, exon 1 of 10) exon (NM_015602, exon 1 of 10) 735 NM_001267578 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 285.5-11 chr17 22699416 22699660 + 2.16667 NA Intergenic L1ME1|LINE|L1 176427 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 288.167-17 chr4 42867865 42868127 + 2.16667 NA Intergenic A-rich|Low_complexity|Low_complexity -25270 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 602.667-3 chr3 189966958 189967502 + 2.16667 NA intron (NM_018192, intron 13 of 14) intron (NM_018192, intron 13 of 14) 137308 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 272.834-3 chr10 94631014 94631186 + 2.16667 NA Intergenic L1MA9|LINE|L1 -52629 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 478.834-3 chr5 41636542 41637200 + 2.16667 NA Intergenic Intergenic -126270 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 701.5 chr12 13534725 13535235 + 2.16667 NA Intergenic LTR50|LTR|ERVL -158235 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 298.5-18 chr3 182013180 182013614 + 2.16667 NA Intergenic Intergenic 61033 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 491-6 chr17 62660575 62660942 + 2.16667 NA intron (NM_006039, intron 1 of 29) L1MEb|LINE|L1 33088 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 192-47 chr8 103087602 103087705 + 2.16667 NA Intergenic Intergenic -33379 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 214-35 chr20 45881546 45881653 + 2.16667 NA intron (NM_080603, intron 1 of 1) intron (NM_080603, intron 1 of 1) 372 NM_080603 90204 Hs.517075 NM_080603 ENSG00000168612 ZSWIM1 C20orf162 zinc finger SWIM-type containing 1 protein-coding 555.666-2 chr8 140836425 140836823 + 2.16667 NA intron (NM_001352746, intron 4 of 30) intron (NM_001352746, intron 4 of 30) -103971 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 649-2 chr18 63439062 63439779 + 2.16667 NA Intergenic Intergenic -16944 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 164.167-49 chr8 17807987 17808071 + 2.16667 NA Intergenic Intergenic -6450 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 597.167 chr19 34953916 34954351 + 2.16667 NA Intergenic L1MB3|LINE|L1 10096 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 315.667-3 chr11 11361238 11361429 + 2.16667 NA intron (NM_198516, intron 6 of 10) MIR|SINE|MIR -8083 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 444.666-5 chr9 18213230 18213676 + 2.16667 NA Intergenic Intergenic -260700 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 469.001 chr2 82137836 82138093 + 2.16667 NA Intergenic Intergenic -671018 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 424.167-4 chr5 27242003 27242326 + 2.16667 NA Intergenic L1PA16|LINE|L1 -203578 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 406.167-9 chr7 83368790 83369062 + 2.16667 NA intron (NM_001178129, intron 16 of 16) MIRb|SINE|MIR -206042 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 457.834-3 chr20 44994161 44994479 + 2.16667 NA intron (NM_001352385, intron 5 of 11) intron (NM_001352385, intron 5 of 11) 27808 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 814.5-3 chr6 125760871 125761589 + 2.16667 NA TTS (NM_012259) TTS (NM_012259) 11598 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 590.501 chr17 78084906 78085371 + 2.16667 NA intron (NM_018996, intron 12 of 20) intron (NM_018996, intron 12 of 20) 26661 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 268.5-22 chr3 113780972 113781178 + 2.16667 NA exon (NM_001690, exon 3 of 15) exon (NM_001690, exon 3 of 15) 34040 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ARCL2D|ATP6A1|ATP6V1A1|HO68|IECEE3|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 830 chr6 158220650 158221344 + 2.16667 NA Intergenic Intergenic 52650 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 859.668-2 chr11 66408452 66408970 + 2.16667 NA Intergenic CpG -12293 NM_001318804 266743 Hs.256036 NM_178864 ENSG00000174576 NPAS4 Le-PAS|NXF|PASD10|bHLHe79 neuronal PAS domain protein 4 protein-coding 516.666 chr14 67823533 67824001 + 2.16667 NA intron (NM_133509, intron 2 of 10) intron (NM_133509, intron 2 of 10) 175 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 375.834-5 chr4 98522726 98522938 + 2.16667 NA intron (NM_005723, intron 1 of 7) intron (NM_005723, intron 1 of 7) 135779 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 485.001-5 chrX 116204774 116205236 + 2.16667 NA Intergenic L1MB1|LINE|L1 34261 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 421.334-2 chr2 38528022 38528526 + 2.16667 NA Intergenic Intergenic -12534 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 363.001 chr1 77842983 77843285 + 2.16667 NA intron (NM_198549, intron 7 of 15) intron (NM_198549, intron 7 of 15) -45381 NM_144573 91624 Hs.612385 NM_144573 ENSG00000162614 NEXN CMH20|NELIN nexilin F-actin binding protein protein-coding 251.167-3 chr1 246001625 246001814 + 2.16667 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 415693 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 295-24 chr6 126360978 126361229 + 2.16667 NA intron (NR_104462, intron 2 of 3) L1P4a|LINE|L1 20988 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 1240.84 chr3 12134698 12135881 + 2.16667 NA intron (NM_133625, intron 1 of 12) intron (NM_133625, intron 1 of 12) 23623 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 622.501-2 chr6 132530403 132531002 + 2.16667 NA Intergenic Intergenic -7586 NM_175057 134860 Hs.434116 NM_175057 ENSG00000237110 TAAR9 TA3|TAR3|TAR9|TRAR3 trace amine associated receptor 9 (gene/pseudogene) protein-coding 433.834-2 chr16 87549173 87549445 + 2.16667 NA Intergenic L1ME3Cz|LINE|L1 -52526 NR_073379 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 413.5-3 chr22 45994609 45995177 + 2.16667 NA Intergenic Intergenic -11723 NR_027240 730668 Hs.640071 NR_027240 ENSG00000280424 LOC730668 - dynein heavy chain -like pseudogene pseudo 566.667-3 chr22 39311042 39311437 + 2.16667 NA Intergenic Intergenic 2672 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 373.167-9 chr6 43667112 43667644 + 2.16667 NA intron (NM_001193341, intron 5 of 5) intron (NM_001193341, intron 5 of 5) 20434 NM_018135 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 546.5-2 chr3 98585115 98585755 + 2.16667 NA intron (NM_000097, intron 5 of 6) intron (NM_000097, intron 5 of 6) 8176 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 299-3 chr1 238419224 238419424 + 2.16667 NA Intergenic Intergenic 66693 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 431.333-7 chr9 17462611 17462866 + 2.16667 NA intron (NM_001365029, intron 19 of 25) intron (NM_001365029, intron 19 of 25) -116328 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 871.001 chr6 100479380 100479944 + 2.16667 NA Intergenic Intergenic -15987 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 251-23 chr3 148076294 148076420 + 2.16667 NA Intergenic Intergenic -1802 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 407.667-2 chr10 17228185 17228629 + 2.16667 NA 5' UTR (NM_003380, exon 1 of 10) 5' UTR (NM_003380, exon 1 of 10) 166 NM_003380 7431 Hs.455493 NM_003380 ENSG00000026025 VIM - vimentin protein-coding 283 chr1 150568312 150568665 + 2.16667 NA intron (NR_104133, intron 2 of 3) intron (NR_104133, intron 2 of 3) 6064 NR_104133 574406 Hs.516243 NM_001025493 ENSG00000203804 ADAMTSL4-AS1 C1orf138 ADAMTSL4 antisense RNA 1 ncRNA 387.167-5 chr4 72704533 72704869 + 2.16667 NA Intergenic Intergenic -135480 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 676.5-3 chr2 174748805 174749448 + 2.16667 NA intron (NM_001039523, intron 8 of 9) intron (NM_001039523, intron 8 of 9) 15346 NM_001039523 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 597.5-2 chr14 49865153 49865825 + 2.16667 NA Intergenic Intergenic -2640 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 265.667-17 chr5 44562930 44563092 + 2.16667 NA Intergenic L1MC1|LINE|L1 -52729 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 340.167-8 chr7 83224723 83224924 + 2.16667 NA Intergenic MIR|SINE|MIR -61939 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 743-2 chr2 114551207 114551995 + 2.16667 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 90024 NM_001321911 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 301.833-12 chr7 77460079 77460321 + 2.16667 NA Intergenic Intergenic -43851 NM_001350900 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 501.501 chr11 11788605 11788978 + 2.16667 NA Intergenic Intergenic -5569 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 356.001-2 chr3 176389650 176389907 + 2.16667 NA Intergenic Intergenic -125325 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 279.334-2 chr1 193999431 193999774 + 2.16667 NA Intergenic Intergenic 694857 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 495.167-3 chr6 75776262 75776602 + 2.16667 NA intron (NM_001300899, intron 1 of 32) intron (NM_001300899, intron 1 of 32) 27193 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 591.667-2 chr8 27315224 27315835 + 2.16667 NA intron (NM_173174, intron 3 of 35) intron (NM_173174, intron 3 of 35) 4051 NM_173174 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 423.501 chr4 109125913 109126121 + 2.16667 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 176641 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 401.333-3 chr14 49294881 49295385 + 2.16667 NA Intergenic Intergenic 291247 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 449.001-2 chr5 41120754 41121124 + 2.16667 NA Intergenic L1MEg1|LINE|L1 -49597 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 348.167 chr1 74686475 74686931 + 2.16667 NA Intergenic Intergenic -12911 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 687.833 chr15 89874854 89875554 + 2.16667 NA intron (NM_001199058, intron 7 of 9) intron (NM_001199058, intron 7 of 9) 8826 NR_049807 100846993 NR_049807 ENSG00000264796 MIR5009 - microRNA 5009 ncRNA 401.334-3 chr8 121240401 121240680 + 2.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR -398806 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 429.167-4 chr14 21384280 21384738 + 2.16667 NA promoter-TSS (NM_007192) promoter-TSS (NM_007192) -490 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 230.334-11 chr9 37863843 37863961 + 2.16667 NA 3' UTR (NM_024345, exon 7 of 7) 3' UTR (NM_024345, exon 7 of 7) 40225 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 372.667-12 chr8 94206163 94206558 + 2.16667 NA intron (NM_001144663, intron 1 of 17) intron (NM_001144663, intron 1 of 17) 2195 NM_004063 1015 Hs.591853 NM_004063 ENSG00000079112 CDH17 CDH16|HPT-1|HPT1 cadherin 17 protein-coding 459.334-2 chr10 116405883 116406355 + 2.16667 NA Intergenic MamGypsy2-I|LTR|Gypsy -21728 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 417.001-2 chr6 56075611 56076223 + 2.16667 NA intron (NM_030820, intron 18 of 29) intron (NM_030820, intron 18 of 29) 15745 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 275.5 chr1 60848535 60848752 + 2.16667 NA Intergenic Intergenic -23059 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 283.167-8 chr18 44381438 44381600 + 2.16667 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 150178 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 320.834-8 chr5 134904431 134904778 + 2.16667 NA promoter-TSS (NM_032151) promoter-TSS (NM_032151) -516 NM_032151 84105 Hs.710014 NM_032151 ENSG00000132570 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding 627.334 chr12 24595270 24595890 + 2.16667 NA Intergenic Intergenic -11412 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 375.167 chr1 60765209 60765601 + 2.16667 NA intron (NR_110628, intron 1 of 5) intron (NR_110628, intron 1 of 5) 60179 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 195.667-19 chr17 63834988 63835088 + 2.16667 NA intron (NM_001330439, intron 5 of 12) MER91B|DNA|hAT-Tip100 3690 NM_001330440 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p|SGD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 336 chr1 48237037 48237297 + 2.16667 NA intron (NM_001135181, intron 11 of 14) intron (NM_001135181, intron 11 of 14) 14451 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 598.667 chr11 17978556 17979169 + 2.16667 NA intron (NR_104040, intron 8 of 11) intron (NR_104040, intron 8 of 11) 34185 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 524.5-2 chr21 25729681 25729950 + 2.16667 NA intron (NM_001003697, intron 1 of 3) intron (NM_001003697, intron 1 of 3) -5157 NM_001197297 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 563-2 chr4 73185135 73185813 + 2.16667 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) 37583 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 443.667-7 chr2 61297882 61298159 + 2.16667 NA intron (NM_014709, intron 29 of 79) intron (NM_014709, intron 29 of 79) 119357 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 192.5-38 chr4 185396428 185396603 + 2.16667 NA promoter-TSS (NM_181726) promoter-TSS (NM_181726) -326 NM_181726 353322 Hs.508154 NM_181726 ENSG00000186352 ANKRD37 Lrp2bp ankyrin repeat domain 37 protein-coding 358.167-6 chr2 71327465 71327697 + 2.16667 NA Intergenic L2a|LINE|L2 -4174 NM_001252612 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 411.668 chr6 132259195 132259509 + 2.16667 NA Intergenic Intergenic 125374 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 379.333-11 chr8 131076270 131076777 + 2.16667 NA Intergenic L2c|LINE|L2 -35614 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 851.167 chr8 22672934 22673504 + 2.16667 NA Intergenic Intergenic -4071 NM_001363046 55909 Hs.433722 NM_018688 ENSG00000147439 BIN3 - bridging integrator 3 protein-coding 818.167 chr18 3703362 3704127 + 2.16667 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 100007 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 603.334 chr1 68384588 68385105 + 2.16667 NA Intergenic Intergenic 65108 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 417.167-2 chr12 12859741 12859963 + 2.16667 NA Intergenic AluJo|SINE|Alu -15625 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 832.167-2 chr3 115819478 115820247 + 2.16667 NA intron (NM_001318915, intron 7 of 8) intron (NM_001318915, intron 7 of 8) 85264 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 271-16 chr2 143501027 143501185 + 2.16667 NA intron (NM_018460, intron 9 of 13) intron (NM_018460, intron 9 of 13) 371687 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 343.167-3 chr17 80791941 80792179 + 2.16667 NA intron (NM_020761, intron 7 of 33) intron (NM_020761, intron 7 of 33) 13572 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 460.333-3 chr15 38354288 38354745 + 2.16667 NA 3' UTR (NM_152594, exon 7 of 7) 3' UTR (NM_152594, exon 7 of 7) -99611 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 410.167-7 chr4 25312342 25312712 + 2.16667 NA promoter-TSS (NM_024936) promoter-TSS (NM_024936) -247 NM_024936 29063 Hs.278945 NM_024936 ENSG00000168228 ZCCHC4 HSPC052|ZGRF4 zinc finger CCHC-type containing 4 protein-coding 412.834-4 chr16 47962511 47962831 + 2.16667 NA Intergenic MER5A|DNA|hAT-Charlie -3018 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 358.834-2 chr3 141361032 141361304 + 2.16667 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) -25257 NM_001350099 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 473.334 chr1 71853137 71853540 + 2.16667 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) -16326 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 267.334-3 chr21 33959893 33960064 + 2.16667 NA intron (NR_134558, intron 2 of 2) L1MEf|LINE|L1 -16404 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 570.333-3 chr18 11732733 11733189 + 2.16667 NA intron (NM_182978, intron 1 of 11) intron (NM_182978, intron 1 of 11) -18511 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 772.833-2 chr17 50178222 50178981 + 2.16667 NA Intergenic Intergenic -6125 NR_024193 373861 Hs.25934 NM_194072 HILS1 H1.9 histone linker H1 domain, spermatid-specific 1 (pseudogene) pseudo 326.167-3 chr14 66828306 66828582 + 2.16667 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) 321037 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 321.334-4 chr8 114364141 114364304 + 2.16667 NA Intergenic L1PB1|LINE|L1 -927283 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 568.834 chr14 57486542 57487236 + 2.16667 NA intron (NM_001283060, intron 2 of 5) intron (NM_001283060, intron 2 of 5) 6968 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 309.833-2 chr10 120262777 120263017 + 2.16667 NA Intergenic L1MC5a|LINE|L1 92326 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 200-51 chr9 96339843 96339946 + 2.16667 NA intron (NR_104627, intron 8 of 12) intron (NR_104627, intron 8 of 12) -37718 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 429.001-2 chr2 116372225 116372488 + 2.16667 NA Intergenic Intergenic 1028541 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 661.334 chr11 14148596 14149106 + 2.16667 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 186128 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 771.5 chr6 79869378 79870040 + 2.16667 NA Intergenic Intergenic -57463 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 356.334-5 chr5 125507244 125507837 + 2.16667 NA intron (NR_109887, intron 2 of 3) THE1B|LTR|ERVL-MaLR 14279 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 550.5-4 chr9 29236730 29237032 + 2.16667 NA Intergenic Intergenic -23280 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 355.501-2 chr3 122101540 122101803 + 2.16667 NA intron (NM_001206924, intron 2 of 5) intron (NM_001206924, intron 2 of 5) 23822 NM_176892 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 335.333-4 chr17 5526879 5527111 + 2.16667 NA intron (NM_014922, intron 12 of 15) intron (NM_014922, intron 12 of 15) -25989 NM_001162371 728392 Hs.104305 NM_001162371 ENSG00000286190 LOC728392 - uncharacterized LOC728392 protein-coding 758-3 chr6 26025898 26026757 + 2.16667 NA TTS (NM_003544) TTS (NM_003544) 925 NM_003544 8366 Hs.143080 NM_003544 ENSG00000278705 HIST1H4B H4/I|H4FI histone cluster 1 H4 family member b protein-coding 176.667-15 chr14 88729168 88729304 + 2.16667 NA intron (NM_183387, intron 7 of 42) L1M5|LINE|L1 63717 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 414-3 chr21 45880555 45880830 + 2.16667 NA intron (NM_001348242, intron 5 of 17) intron (NM_001348242, intron 5 of 17) 30731 NM_020528 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 549.667-3 chr17 32135802 32136375 + 2.16667 NA Intergenic Intergenic -6366 NM_001033568 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding 452.834-2 chr9 17666149 17666437 + 2.16667 NA intron (NM_003026, intron 1 of 8) L1MC4a|LINE|L1 87227 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 423.167-4 chr11 38750072 38750458 + 2.16667 NA Intergenic L1MEf|LINE|L1 101407 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 646.334 chr17 58417518 58418064 + 2.16667 NA promoter-TSS (NM_017763) promoter-TSS (NM_017763) -209 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 461.167 chr1 116485247 116485688 + 2.16667 NA Intergenic Intergenic -6641 NR_125972 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 398.334-6 chr8 9760344 9760758 + 2.16667 NA intron (NM_003747, intron 20 of 26) intron (NM_003747, intron 20 of 26) 18879 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 472.333-4 chrX 80578735 80579123 + 2.16667 NA Intergenic Intergenic 158482 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 336-8 chr14 88657730 88657892 + 2.16667 NA intron (NM_183387, intron 26 of 42) intron (NM_183387, intron 26 of 42) 63391 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 236.167-10 chr2 111960531 111960669 + 2.16667 NA intron (NM_006343, intron 4 of 18) Charlie2b|DNA|hAT-Charlie 61993 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 247.833-3 chr10 57701541 57701810 + 2.16667 NA Intergenic L2|LINE|L2 -397116 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 532.666 chr11 62786224 62786723 + 2.16667 NA promoter-TSS (NM_001363599) promoter-TSS (NM_001363599) -929 NM_001363600 374395 Hs.381134 NM_199337 ENSG00000185475 TMEM179B - transmembrane protein 179B protein-coding 212.5-2 chr1 91412401 91412541 + 2.16667 NA Intergenic Intergenic -7634 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 565.167-2 chr2 132651051 132651728 + 2.16667 NA intron (NM_144586, intron 2 of 2) intron (NM_144586, intron 2 of 2) 18816 NM_001321235 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 235.833-23 chr9 27550437 27550591 + 2.16667 NA intron (NM_001256054, intron 9 of 10) intron (NM_001256054, intron 9 of 10) -20700 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 572.834-2 chr17 43334046 43334446 + 2.16667 NA Intergenic LTR13|LTR|ERVK -34015 NR_002716 6066 NR_002716 ENSG00000274585 RNU2-1 RNU2|U2 RNA, U2 small nuclear 1 snRNA 299 chr1 30717233 30717384 + 2.16667 NA intron (NM_002379, intron 3 of 7) MIRb|SINE|MIR -1464 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 378.168 chr12 109845246 109845522 + 2.16667 NA Intergenic Intergenic -11977 NM_021625 59341 Hs.506713 NM_021625 ENSG00000111199 TRPV4 BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel subfamily V member 4 protein-coding 381.001-4 chr9 104682692 104682986 + 2.16667 NA Intergenic Intergenic -11583 NM_001004484 286365 Hs.553683 NM_001004484 ENSG00000179055 OR13D1 OR9-15 olfactory receptor family 13 subfamily D member 1 protein-coding 225.5-7 chr12 13613892 13614008 + 2.16667 NA intron (NM_000834, intron 7 of 12) intron (NM_000834, intron 7 of 12) -237205 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 374.999 chr20 431632 432116 + 2.16667 NA non-coding (NR_136659, exon 12 of 12) non-coding (NR_136659, exon 12 of 12) 23575 NM_006462 10616 Hs.29546 NM_006462 ENSG00000125826 RBCK1 C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 RANBP2-type and C3HC4-type zinc finger containing 1 protein-coding 416.333-3 chr12 106357420 106357997 + 2.16667 NA promoter-TSS (NM_018082) promoter-TSS (NM_018082) -40 NM_018082 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 357.834-3 chr10 117216522 117216742 + 2.16667 NA Intergenic CpG 19143 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 278.167-7 chr15 89898516 89898877 + 2.16667 NA 3' UTR (NM_182616, exon 6 of 6) 3' UTR (NM_182616, exon 6 of 6) -4702 NM_005829 10239 Hs.632161 NM_005829 ENSG00000157823 AP3S2 AP3S3|sigma3b adaptor related protein complex 3 subunit sigma 2 protein-coding 288.5-16 chr2 126422920 126423078 + 2.16667 NA Intergenic L1MA7|LINE|L1 -232936 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 439.666 chr12 59829888 59830476 + 2.16667 NA Intergenic Intergenic 140812 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 498.834 chr16 25225417 25225892 + 2.16667 NA intron (NM_001169, intron 4 of 5) AluY|SINE|Alu 8707 NM_001169 343 Hs.176658 NM_001169 ENSG00000103375 AQP8 AQP-8 aquaporin 8 protein-coding 535.333-2 chr6 150335118 150335550 + 2.16667 NA Intergenic Intergenic -33678 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 478.668 chr14 78308665 78308992 + 2.16667 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -94891 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 492.667-2 chr3 15788213 15788668 + 2.16667 NA intron (NM_001349284, intron 2 of 2) intron (NM_001349284, intron 2 of 2) 9539 NM_001349282 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 700.666 chr10 48363251 48363936 + 2.16667 NA intron (NM_001323302, intron 3 of 13) intron (NM_001323302, intron 3 of 13) -38019 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 406.333-7 chr4 76476290 76476607 + 2.16667 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 41219 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 618.332-2 chr5 115069352 115069824 + 2.16667 NA Intergenic Intergenic 100320 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 351.334-2 chr12 71713214 71713735 + 2.16667 NA Intergenic L1MB2|LINE|L1 27392 NM_018279 55266 Hs.644802 NM_018279 ENSG00000139291 TMEM19 - transmembrane protein 19 protein-coding 174.333-42 chr9 90643196 90643404 + 2.16667 NA promoter-TSS (NM_017594) promoter-TSS (NM_017594) -476 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 467.667-3 chr21 27558551 27558932 + 2.16667 NA Intergenic Intergenic -163638 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 486.166 chr2 54106857 54107420 + 2.16667 NA intron (NM_001320587, intron 3 of 5) intron (NM_001320587, intron 3 of 5) -8477 NM_001320590 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 322-7 chr2 163770034 163770292 + 2.16667 NA Intergenic Intergenic -34155 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 179.834-2 chr11 101752945 101753101 + 2.16667 NA Intergenic LTR16C|LTR|ERVL -161987 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 456.667-6 chr6 87322263 87322742 + 2.16667 NA promoter-TSS (NM_001287445) promoter-TSS (NM_001287445) -86 NM_001042493 57150 Hs.70769 NM_020425 ENSG00000111850 SMIM8 C6orf162|dJ102H19.2 small integral membrane protein 8 protein-coding 407.166-2 chr3 1508981 1509277 + 2.16667 NA Intergenic Intergenic 416105 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 340.333-6 chr14 43075201 43075541 + 2.16667 NA Intergenic L2a|LINE|L2 1431912 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 616.834-2 chr6 36422787 36423543 + 2.16667 NA intron (NM_152990, intron 3 of 4) intron (NM_152990, intron 3 of 4) -19602 NR_104481 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 476.167 chr1 185607516 185608002 + 2.16667 NA intron (NR_110793, intron 2 of 3) intron (NR_110793, intron 2 of 3) 20729 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 481-5 chrX 38627471 38628283 + 2.16667 NA intron (NM_004615, intron 1 of 7) intron (NM_004615, intron 1 of 7) 66399 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 559.334 chr10 15879450 15879814 + 2.16667 NA Intergenic Intergenic -19099 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 1010.67 chr19 12965131 12965829 + 2.16667 NA Intergenic Intergenic -4138 NM_152654 199699 Hs.331981 NM_152654 ENSG00000179284 DAND5 CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1 DAN domain BMP antagonist family member 5 protein-coding 573.666-4 chr5 23978027 23978597 + 2.16667 NA intron (NR_131245, intron 3 of 4) HERVIP10B3-int|LTR|ERV1 26964 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 238.834-6 chr2 26469244 26469473 + 2.16667 NA intron (NM_194322, intron 14 of 28) intron (NM_194322, intron 14 of 28) 8766 NM_004802 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 436.001 chr2 118046626 118046865 + 2.16667 NA Intergenic Intergenic -32675 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 320.333-9 chrX 78271446 78271751 + 2.16667 NA 3' UTR (NM_001282188, exon 4 of 4) 3' UTR (NM_001282188, exon 4 of 4) 56013 NM_001282188 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 253.334-15 chr9 92708086 92708309 + 2.16667 NA Intergenic L1M4|LINE|L1 -38066 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 648 chr1 172723221 172723892 + 2.16667 NA Intergenic MER4D|LTR|ERV1 64453 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 335.5-2 chr11 6182224 6182450 + 2.16667 NA Intergenic L1MD1|LINE|L1 -12011 NM_001004052 255725 Hs.690457 NM_001004052 ENSG00000255307 OR52B2 OR11-70 olfactory receptor family 52 subfamily B member 2 protein-coding 441.667-7 chr5 170434920 170435226 + 2.16667 NA intron (NM_001034838, intron 1 of 7) intron (NM_001034838, intron 1 of 7) 45580 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 421.333-6 chr2 234927774 234928030 + 2.16667 NA Intergenic AluJb|SINE|Alu -24115 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 450.333-5 chr19 4525248 4525544 + 2.16667 NA intron (NM_001013706, intron 6 of 7) L2b|LINE|L2 -6910 NM_001367868 729359 Hs.591387 NM_001080400 ENSG00000167676 PLIN4 KIAA1881|S3-12 perilipin 4 protein-coding 600.334 chr12 32070188 32070795 + 2.16667 NA Intergenic L1MC5a|LINE|L1 -36316 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 842.5-3 chr6 143939953 143940673 + 2.16667 NA TTS (NM_001289049) TTS (NM_001289049) 21097 NM_001317157 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 450-8 chr7 91082755 91083368 + 2.16667 NA intron (NM_012395, intron 11 of 13) intron (NM_012395, intron 11 of 13) -181372 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 307.167-19 chr4 97630357 97630711 + 2.16667 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 263608 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 417.5-4 chr11 47642296 47642686 + 2.16667 NA promoter-TSS (NM_014342) promoter-TSS (NM_014342) 68 NM_014342 23788 Hs.269944 NM_014342 ENSG00000109919 MTCH2 HSPC032|MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 490.166-2 chr5 105242393 105242761 + 2.16667 NA Intergenic MIR|SINE|MIR 143103 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 437.334-5 chr2 34958469 34958746 + 2.16667 NA Intergenic Intergenic 281050 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 263.5-18 chr2 81975701 81975904 + 2.16667 NA Intergenic L1MC3|LINE|L1 -508856 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 424.334 chr10 54686712 54687000 + 2.16667 NA intron (NM_001354404, intron 4 of 34) L1MB1|LINE|L1 -78899 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 506.834-3 chr3 97914504 97914894 + 2.16667 NA intron (NM_153605, intron 16 of 21) MIR|SINE|MIR 57732 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 522.834 chr1 80845705 80846342 + 2.16667 NA Intergenic Intergenic 204736 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 317.666-2 chr12 12406198 12406431 + 2.16667 NA intron (NM_001300742, intron 2 of 3).2 intron (NM_001300742, intron 2 of 3).2 49236 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 397 chr1 73168166 73168366 + 2.16667 NA Intergenic Arthur1B|DNA|hAT-Tip100 -137904 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 586.001 chr16 70251988 70252470 + 2.16667 NA promoter-TSS (NM_058219) promoter-TSS (NM_058219) -289 NM_058219 118460 Hs.660633 NM_058219 ENSG00000223496 EXOSC6 EAP4|MTR3|Mtr3p|hMtr3p|p11 exosome component 6 protein-coding 337.334-2 chr10 57745217 57745732 + 2.16667 NA Intergenic Intergenic -440915 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 283.167-18 chr8 142337060 142337216 + 2.16667 NA intron (NM_001291931, intron 2 of 10) L1MEf|LINE|L1 66044 NM_001366902 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 510.167 chr12 72837393 72837799 + 2.16667 NA Intergenic Intergenic -321594 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 479.499 chr8 136259298 136259995 + 2.16667 NA Intergenic Intergenic -271152 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 284.167-6 chr12 13592209 13592394 + 2.16667 NA intron (NM_000834, intron 9 of 12) MER83B|LTR|ERV1 -215556 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 694.334 chr17 45049146 45049668 + 2.16667 NA intron (NM_001288654, intron 1 of 4) AluJr|SINE|Alu 2225 NM_001128631 79877 Hs.463148 NM_024819 ENSG00000172992 DCAKD - dephospho-CoA kinase domain containing protein-coding 269.334-4 chr13 72495628 72495889 + 2.16667 NA Intergenic Intergenic 231871 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 725-2 chr16 2961683 2962132 + 2.16667 NA Intergenic Intergenic -2368 NM_172229 79412 Hs.661128 NM_024507 ENSG00000131650 KREMEN2 KRM2 kringle containing transmembrane protein 2 protein-coding 647 chr10 55631122 55631762 + 2.16667 NA Intergenic CpG -3500 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 232.167-19 chr7 8038229 8038577 + 2.16667 NA intron (NM_138426, intron 3 of 7) L1PB4|LINE|L1 69607 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 369.834 chr16 22679205 22679585 + 2.16667 NA Intergenic Intergenic 133697 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 718-2 chr11 123111316 123111952 + 2.16667 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) -49498 NM_006597 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 572.333 chr20 23446560 23447082 + 2.16667 NA Intergenic Intergenic 6055 NM_080830 140880 Hs.128100 NM_080830 ENSG00000125831 CST11 CST8L|CTES2|SC13|dJ322G13.6 cystatin 11 protein-coding 393.834-3 chr10 81190126 81190313 + 2.16667 NA Intergenic Intergenic 540422 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 381.167-9 chr9 88106481 88106857 + 2.16667 NA Intergenic Intergenic 28316 NM_001166137 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 586-2 chr10 14385809 14386534 + 2.16667 NA Intergenic Intergenic -2894 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 344.333-11 chr5 102448585 102448796 + 2.16667 NA intron (NM_173488, intron 6 of 13) L1PA15|LINE|L1 50311 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 672.001-2 chr2 108170020 108170603 + 2.16667 NA intron (NR_131251, intron 3 of 4) intron (NR_131251, intron 3 of 4) 47530 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 590.667-4 chr2 119899773 119900234 + 2.16667 NA intron (NM_002830, intron 9 of 26) intron (NM_002830, intron 9 of 26) -113074 NM_001184937 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 197-16 chr2 150633334 150633424 + 2.16667 NA intron (NR_110247, intron 2 of 3) intron (NR_110247, intron 2 of 3) 4482 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 759.667-2 chrX 108139316 108140087 + 2.16667 NA intron (NM_001321287, intron 10 of 13) intron (NM_001321287, intron 10 of 13) 47923 NM_052936 115201 Hs.8763 NM_052936 ENSG00000101844 ATG4A APG4A|AUTL2 autophagy related 4A cysteine peptidase protein-coding 307.667-16 chr5 21858257 21858495 + 2.16667 NA intron (NM_004061, intron 6 of 14) intron (NM_004061, intron 6 of 14) -26078 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 344.167-4 chr14 60314000 60314224 + 2.16667 NA Intergenic Intergenic -9084 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 415.5-6 chr4 114024945 114025269 + 2.16667 NA Intergenic Intergenic -45460 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 269.001-4 chr6 65960223 65960444 + 2.16667 NA Intergenic Intergenic 172454 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 278.167-26 chr6 139324161 139324323 + 2.16667 NA Intergenic Intergenic -32244 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 292.167-22 chr7 117715921 117716081 + 2.16667 NA intron (NM_001363351, intron 22 of 22) intron (NM_001363351, intron 22 of 22) -151325 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 459.167-4 chr12 9743022 9743311 + 2.16667 NA Intergenic L1M4|LINE|L1 -9867 NM_001253750 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 279-26 chr4 36690707 36690956 + 2.16667 NA Intergenic L1PA16|LINE|L1 -48931 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 490.333-5 chr2 47906619 47907221 + 2.16667 NA Intergenic Intergenic -1127 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 439.167-5 chr2 28892915 28893316 + 2.16667 NA Intergenic AluJo|SINE|Alu -1552 NM_015131 23160 Hs.622982 NM_015131 ENSG00000163811 WDR43 NET12|UTP5 WD repeat domain 43 protein-coding 344.5-17 chr8 138291091 138291399 + 2.16667 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 206016 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 393.834 chr1 106384843 106385160 + 2.16667 NA Intergenic Intergenic -356748 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 417.167-3 chr12 62007614 62008081 + 2.16667 NA intron (NM_178539, intron 1 of 4) L1MA6|LINE|L1 184992 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 546.501-3 chr8 103083965 103084297 + 2.16667 NA Intergenic Intergenic -36901 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 487.167-4 chr6 89609885 89610861 + 2.16667 NA intron (NM_001242809, intron 5 of 15) L1ME1|LINE|L1 28124 NR_028494 57226 Hs.177275 NM_020466 ENSG00000083099 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 401.501-2 chr2 116177285 116177509 + 2.16667 NA Intergenic Intergenic 833582 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 518.833-3 chr6 99119282 99120009 + 2.16667 NA Intergenic Intergenic -4964 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 259-15 chr13 85865051 85865190 + 2.16667 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -65701 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 600.334-2 chr3 24185121 24186057 + 2.16667 NA intron (NR_121667, intron 3 of 3) intron (NR_121667, intron 3 of 3) 34265 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 347.5 chr10 22433773 22433967 + 2.16667 NA Intergenic L1MC|LINE|L1 4059 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 580.834-2 chr20 49346497 49346888 + 2.16667 NA Intergenic MER45A|DNA|hAT-Tip100 66009 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 555.334 chr11 6667689 6668138 + 2.16667 NA Intergenic L1MB7|LINE|L1 -12104 NM_003737 8642 Hs.199850 NM_003737 ENSG00000166341 DCHS1 CDH19|CDH25|CDHR6|FIB1|MVP2|PCDH16|VMLDS1 dachsous cadherin-related 1 protein-coding 227.667-27 chr20 7628284 7628592 + 2.16667 NA Intergenic Intergenic 256830 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 452-2 chr8 71361376 71362058 + 2.16667 NA 5' UTR (NM_000503, exon 1 of 18) 5' UTR (NM_000503, exon 1 of 18) 352 NM_000503 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 403-5 chr4 145085464 145085753 + 2.16667 NA intron (NR_046345, intron 1 of 2) intron (NR_046345, intron 1 of 2) 11774 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 587.668 chr21 20023574 20024071 + 2.16667 NA Intergenic Intergenic -124067 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 418-5 chr2 78114407 78114657 + 2.16667 NA intron (NR_110287, intron 5 of 5) intron (NR_110287, intron 5 of 5) 25802 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 541.5-7 chr3 115833959 115834707 + 2.16667 NA intron (NM_001318915, intron 7 of 8) intron (NM_001318915, intron 7 of 8) 70793 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 405.167-6 chr5 67392529 67392765 + 2.16667 NA Intergenic Intergenic -195848 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 288.5-3 chr1 167810950 167811190 + 2.16667 NA intron (NM_018417, intron 31 of 32) intron (NM_018417, intron 31 of 32) 89088 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 320.334-10 chr4 65493993 65494192 + 2.16667 NA intron (NM_001281767, intron 4 of 16) intron (NM_001281767, intron 4 of 16) 175396 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 324.667-17 chr22 35286889 35287146 + 2.16667 NA intron (NM_001003681, intron 7 of 10) intron (NM_001003681, intron 7 of 10) -12258 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 299.334-2 chr15 34740478 34740674 + 2.16667 NA Intergenic Intergenic 14422 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 717.167 chr14 20989773 20990461 + 2.16667 NA intron (NM_022734, intron 1 of 13) intron (NM_022734, intron 1 of 13) 137 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 565.667 chr3 107998850 107999260 + 2.16667 NA Intergenic L1M3|LINE|L1 92033 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 591.334-4 chr3 24329740 24330047 + 2.16667 NA intron (NM_001252634, intron 2 of 11) MER5A|DNA|hAT-Charlie -164194 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 458.333-4 chr3 137692980 137693287 + 2.16667 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -71182 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 395.334-6 chr7 10889530 10889806 + 2.16667 NA Intergenic Intergenic 50485 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 166.167-13 chr15 42591706 42591843 + 2.16667 NA intron (NM_020759, intron 3 of 32) intron (NM_020759, intron 3 of 32) 16168 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 452.667-5 chr8 124525779 124526278 + 2.16667 NA intron (NM_001317889, intron 1 of 12) LTR56|LTR|ERV1 13057 NM_032026 83940 Hs.170568 NM_032026 ENSG00000147687 TATDN1 CDA11 TatD DNase domain containing 1 protein-coding 820.5 chr2 208255177 208256110 + 2.16667 NA promoter-TSS (NM_005896) promoter-TSS (NM_005896) 410 NR_046452 100507475 Hs.668038 NR_046452 ENSG00000231908 IDH1-AS1 - IDH1 antisense RNA 1 ncRNA 288.5-8 chr14 50892906 50893075 + 2.16667 NA intron (NM_001206673, intron 9 of 12) L1ME3B|LINE|L1 20830 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 339.333-15 chr9 30081332 30081650 + 2.16667 NA Intergenic Intergenic 326963 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 706.666 chr4 114807583 114808488 + 2.16667 NA Intergenic L1PA17|LINE|L1 151276 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 394.5 chr1 17336321 17336547 + 2.16667 NA intron (NM_012387, intron 4 of 15).2 intron (NM_012387, intron 4 of 15).2 28237 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 240-42 chr4 87969482 87969596 + 2.16667 NA Intergenic Intergenic -6111 NM_001251830 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 468.834-4 chr5 110749970 110750311 + 2.16667 NA intron (NM_138773, intron 5 of 7) intron (NM_138773, intron 5 of 7) 11133 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 452.334-6 chr6 73515628 73516107 + 2.16667 NA 3' UTR (NM_001402, exon 8 of 8) 3' UTR (NM_001402, exon 8 of 8) 2571 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 577.667-2 chr3 33074628 33075102 + 2.16667 NA intron (NM_000404, intron 1 of 15) intron (NM_000404, intron 1 of 15) 21967 NM_001079811 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 495.667 chr16 29863238 29863660 + 2.16667 NA promoter-TSS (NM_001286586) promoter-TSS (NM_001286586) -223 NM_001286586 10423 Hs.121549 NM_006319 ENSG00000103502 CDIPT PIS|PIS1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase protein-coding 260.5-22 chr6 130378644 130378950 + 2.16667 NA intron (NM_001258276, intron 1 of 1) intron (NM_001258276, intron 1 of 1) 12516 NM_001258277 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 242.667-11 chr16 84624297 84624441 + 2.16667 NA Intergenic L1MB7|LINE|L1 -6291 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 263-8 chr2 160110048 160110410 + 2.16667 NA intron (NM_001282390, intron 12 of 13) MIR|SINE|MIR -47614 NM_001007267 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 545.001 chr22 18730820 18731313 + 2.16667 NA Intergenic (TTATA)n|Simple_repeat|Simple_repeat -2848 NR_136561 642643 NR_136561 ENSG00000182824 FAM230E LINC01662 family with sequence similarity 230 member E ncRNA 498.834-2 chr7 92648114 92648554 + 2.16667 NA intron (NM_001259, intron 5 of 7) LTR40a|LTR|ERVL -57944 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 263.334-10 chr6 115053027 115053182 + 2.16667 NA Intergenic L1MEd|LINE|L1 590731 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 569.668 chr1 119008668 119009176 + 2.16667 NA Intergenic Intergenic -7517 NR_135035 105378933 Hs.599652 NR_135034 ENSG00000226172 LOC105378933 - uncharacterized LOC105378933 ncRNA 361.5-10 chr2 52227721 52228045 + 2.16667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -142765 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 504.167-2 chr8 36858260 36858890 + 2.16667 NA intron (NM_001031836, intron 18 of 26) intron (NM_001031836, intron 18 of 26) 74201 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 297.167-6 chr2 198939043 198939322 + 2.16667 NA Intergenic L1MA5|LINE|L1 518757 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 503.501 chr10 70626059 70626438 + 2.16667 NA Intergenic LTR7|LTR|ERV1 -23460 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 360.834-2 chr10 19097153 19097609 + 2.16667 NA intron (NM_001142308, intron 4 of 39) intron (NM_001142308, intron 4 of 39) 48580 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 253.334-13 chr5 30418597 30418724 + 2.16667 NA Intergenic Intergenic 538100 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 541.167-3 chr9 119365903 119366306 + 2.16667 NA intron (NM_014618, intron 1 of 7) intron (NM_014618, intron 1 of 7) 3331 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 950.333 chr20 10427064 10428284 + 2.16667 NA intron (NR_072977, intron 1 of 4) intron (NR_072977, intron 1 of 4) 4251 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 246.833-5 chr15 26900065 26900306 + 2.16667 NA intron (NM_001165037, intron 6 of 10) L1M4|LINE|L1 33059 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 397.499-4 chr8 38188334 38188664 + 2.16667 NA intron (NM_001204878, intron 1 of 3) L1MA4|LINE|L1 11644 NM_004874 9530 Hs.194726 NM_004874 ENSG00000156735 BAG4 BAG-4|SODD BCL2 associated athanogene 4 protein-coding 231.667-7 chr17 49952483 49953104 + 2.16667 NA Intergenic Intergenic -16397 NM_138281 1748 Hs.591167 NM_001934 ENSG00000108813 DLX4 BP1|DLX7|DLX8|DLX9|OFC15 distal-less homeobox 4 protein-coding 366.667-8 chr6 28372025 28372244 + 2.16667 NA Intergenic Intergenic 10471 NR_160527 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 326.334-10 chr8 109338094 109338280 + 2.16667 NA intron (NM_001193557, intron 2 of 4) L2a|LINE|L2 3840 NM_020189 56943 Hs.492555 NM_020189 ENSG00000120533 ENY2 DC6|Sus1|e(y)2 ENY2 transcription and export complex 2 subunit protein-coding 526.834-3 chr14 43500644 43501003 + 2.16667 NA Intergenic L1ME2z|LINE|L1 1006460 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 422.5 chr1 9142204 9142499 + 2.16667 NA Intergenic Intergenic 9426 NR_029610 407040 NR_029610 ENSG00000284357 MIR34A MIRN34A|miRNA34A|mir-34|mir-34a microRNA 34a ncRNA 725.168 chr12 22018867 22019331 + 2.16667 NA Intergenic Intergenic -27075 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 204.334-7 chr4 61479212 61479402 + 2.16667 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 277135 NM_001371342 418-3 chr14 64995521 64995717 + 2.16667 NA intron (NM_002028, intron 1 of 11) Tigger3b|DNA|TcMar-Tigger 8724 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 440.001 chr2 198657494 198657937 + 2.16667 NA Intergenic Intergenic -282618 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 222.167-20 chr19 2785298 2785443 + 2.16667 NA promoter-TSS (NM_003249) promoter-TSS (NM_003249) -133 NM_003249 7064 Hs.78769 NM_003249 ENSG00000172009 THOP1 EP24.15|MEPD_HUMAN|MP78|TOP thimet oligopeptidase 1 protein-coding 246-5 chr12 50619219 50619464 + 2.16667 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 114356 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 801.667 chr15 52780468 52780985 + 2.16667 NA non-coding (NR_073510, exon 1 of 2) non-coding (NR_073510, exon 1 of 2) 158 NR_073510 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 247-5 chr11 77113682 77113892 + 2.16667 NA intron (NM_004055, intron 4 of 12) L1MB4|LINE|L1 10947 NM_006189 4975 Hs.673853 NM_006189 ENSG00000254550 OMP - olfactory marker protein protein-coding 187.667-39 chr6 50118018 50118171 + 2.16667 NA Intergenic Intergenic -68165 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 364.5-3 chr1 86091528 86091895 + 2.16667 NA intron (NM_152890, intron 6 of 59) MIRc|SINE|MIR 64760 NR_146344 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 388.167-5 chr4 95340465 95340829 + 2.16667 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 208326 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 178-20 chr2 16281968 16282067 + 2.16667 NA Intergenic Intergenic 231590 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 333-12 chr6 123392981 123393574 + 2.16667 NA intron (NM_001251987, intron 13 of 20) intron (NM_001251987, intron 13 of 20) -46327 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 220.167-3 chr10 112448026 112448210 + 2.16667 NA promoter-TSS (NM_001351082) promoter-TSS (NM_001351082) -515 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 439-2 chr16 86261882 86262175 + 2.16667 NA intron (NR_104139, intron 3 of 5) intron (NR_104139, intron 3 of 5) 24219 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 382.167-6 chr18 12116658 12117022 + 2.16667 NA intron (NM_001277333, intron 10 of 13) L1MEc|LINE|L1 22997 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 219.5-11 chr14 59022820 59022922 + 2.16667 NA Intergenic L3|LINE|CR1 -165796 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 226.834-11 chr5 72280445 72280569 + 2.16667 NA intron (NM_001286748, intron 4 of 11) intron (NM_001286748, intron 4 of 11) 39733 NM_015084 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 402.834-4 chr12 41306088 41306487 + 2.16667 NA intron (NM_001164595, intron 3 of 9) MLT1A-int|LTR|ERVL-MaLR 117967 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 333.834-3 chr17 51456020 51456346 + 2.16667 NA Intergenic Intergenic 20756 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 802.666 chr10 68327733 68328670 + 2.16667 NA intron (NM_001033083, intron 1 of 8) intron (NM_001033083, intron 1 of 8) -3492 NM_001322445 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 361.667 chr1 92804728 92805047 + 2.16667 NA Intergenic MER65D|LTR|ERV1 -12477 NM_005665 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 252.834-3 chr10 66489123 66489341 + 2.16667 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -436804 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 301.5-14 chr20 760888 761342 + 2.16667 NA exon (NM_033409, exon 5 of 5) exon (NM_033409, exon 5 of 5) 7385 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 822.333-2 chr19 13061284 13061952 + 2.16667 NA intron (NM_001365984, intron 1 of 9) intron (NM_001365984, intron 1 of 9) 36839 NM_001365984 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 394.501-2 chr3 115093057 115093284 + 2.16667 NA intron (NM_001348800, intron 1 of 11) intron (NM_001348800, intron 1 of 11) 7138 NM_001348804 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 301.167 chr1 73827634 73827906 + 2.16667 NA Intergenic Kanga11a|DNA|TcMar-Tc2 153091 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 429.5-3 chr16 69123829 69124392 + 2.16667 NA intron (NM_001002847, intron 1 of 2) AluSx3|SINE|Alu 8049 NM_001366604 113455421 Hs.85962 NM_001002847 DERPC CHTF8 DERPC proline and glycine rich nuclear protein protein-coding 767.667-3 chr3 183766902 183767428 + 2.16667 NA intron (NM_001351371, intron 15 of 21) intron (NM_001351371, intron 15 of 21) 43286 NR_046727 100874113 NR_046727 YEATS2-AS1 - YEATS2 antisense RNA 1 ncRNA 498.334 chr17 59712293 59712816 + 2.16667 NA intron (NM_001329394, intron 1 of 11) L2b|LINE|L2 4900 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 335.834-6 chr2 165327063 165327308 + 2.16667 NA intron (NM_001040143, intron 14 of 27) intron (NM_001040143, intron 14 of 27) 33130 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 299.167-19 chr4 177040613 177040835 + 2.16667 NA Intergenic Intergenic 165022 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 621.166 chr2 166132870 166133541 + 2.16667 NA intron (NR_110260, intron 2 of 11) intron (NR_110260, intron 2 of 11) -5185 NR_148667 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 375.167-6 chr5 75586318 75586561 + 2.16667 NA intron (NM_016218, intron 9 of 14) L2a|LINE|L2 -25037 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 267.834-4 chr19 37645313 37645597 + 2.16667 NA intron (NM_001320666, intron 3 of 5) MER58C|DNA|hAT-Charlie 10010 NM_014898 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 405.333-5 chr16 81077184 81077496 + 2.16667 NA promoter-TSS (NM_152337) promoter-TSS (NM_152337) -73 NM_152337 123775 Hs.658684 NM_152337 ENSG00000166455 C16orf46 - chromosome 16 open reading frame 46 protein-coding 440.333-5 chr21 15923625 15924016 + 2.16667 NA Intergenic Intergenic -146668 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 390.167-4 chr2 11835385 11835625 + 2.16667 NA Intergenic Intergenic 1481 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 257.5-18 chr2 48314246 48314612 + 2.16667 NA promoter-TSS (NM_002158) promoter-TSS (NM_002158) -253 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 494.501 chr5 141521846 141522366 + 2.16667 NA intron (NM_001314007, intron 27 of 28) intron (NM_001314007, intron 27 of 28) 32865 NM_032407 56097 Hs.368160 NM_018929 ENSG00000240764 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 580 chr13 98653377 98653841 + 2.16667 NA Intergenic MIRc|SINE|MIR 76354 NR_046542 100874069 Hs.594160 NR_046542 STK24-AS1 - STK24 antisense RNA 1 ncRNA 614.168 chr4 154550357 154550934 + 2.16667 NA promoter-TSS (NM_001201564) promoter-TSS (NM_001201564) -212 NM_001201564 5356 Hs.249996 NM_002669 ENSG00000171566 PLRG1 Cwc1|PRL1|PRP46|PRPF46|TANGO4 pleiotropic regulator 1 protein-coding 437.334-2 chr1 239914908 239915186 + 2.16667 NA 3' UTR (NM_000740, exon 5 of 5) 3' UTR (NM_000740, exon 5 of 5) -15175 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 605.834 chr16 82015675 82016411 + 2.16667 NA Intergenic L2b|LINE|L2 -4573 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 502.667-2 chr21_GL383578v2_alt 22152 22481 + 2.16667 NA NA L1MA6|LINE|L1 NA NA 239.167-7 chr11 75087167 75087313 + 2.16667 NA Intergenic L1MD3|LINE|L1 9650 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 431.334-2 chr2 98349519 98349722 + 2.16667 NA intron (NM_001079878, intron 1 of 6) intron (NM_001079878, intron 1 of 6) 3164 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 624.334-4 chr5 90802645 90803166 + 2.16667 NA intron (NR_003149, intron 71 of 89) intron (NR_003149, intron 71 of 89) 244108 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 373.167-8 chr5 177317653 177318097 + 2.16667 NA Intergenic MER21-int|LTR|ERVL -5977 NM_001142935 83463 Hs.743332 NM_031300 ENSG00000213347 MXD3 BHLHC13|MAD3|MYX MAX dimerization protein 3 protein-coding 372.834-8 chr8 109021025 109021197 + 2.16667 NA Intergenic MSTB|LTR|ERVL-MaLR -65517 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 338-5 chr12 27675178 27675442 + 2.16667 NA intron (NM_003622, intron 17 of 29) intron (NM_003622, intron 17 of 29) -21137 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 313.833-4 chr17 44445311 44445598 + 2.16667 NA intron (NM_001304942, intron 2 of 6) intron (NM_001304942, intron 2 of 6) -8603 NM_001304943 23131 Hs.463129 NM_001002909 ENSG00000186566 GPATCH8 GPATC8|KIAA0553 G-patch domain containing 8 protein-coding 358.334-5 chr8 117285041 117285419 + 2.16667 NA Intergenic Intergenic 150235 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 420.167-6 chr4 69766177 69766528 + 2.16667 NA Intergenic Intergenic -5732 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 404.667-2 chr17 2416208 2416675 + 2.16667 NA 3' UTR (NM_024086, exon 10 of 10) 3' UTR (NM_024086, exon 10 of 10) -1005 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 479.667-4 chr17 62703393 62704186 + 2.16667 NA intron (NM_001288779, intron 11 of 11) CpG -2417 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 469.667 chr11 82858602 82859259 + 2.16667 NA intron (NM_001319214, intron 1 of 7) intron (NM_001319214, intron 1 of 7) 41500 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 451-2 chr2 176126655 176127008 + 2.16667 NA Intergenic Intergenic -2874 NM_001199747 3234 Hs.301963 NM_019558 ENSG00000175879 HOXD8 HOX4|HOX4E|HOX5.4 homeobox D8 protein-coding 644.666-3 chr9 122453046 122453618 + 2.16667 NA Intergenic Intergenic 24594 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 330.5-8 chr3 106848066 106848245 + 2.16667 NA Intergenic Intergenic 392483 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 527.334-4 chr9 94681347 94681895 + 2.16667 NA Intergenic Intergenic -41372 NM_001127628 2203 Hs.494496 NM_000507 ENSG00000165140 FBP1 FBP fructose-bisphosphatase 1 protein-coding 369.667-7 chr9 80177939 80178344 + 2.16667 NA Intergenic MSTB-int|LTR|ERVL-MaLR 203118 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 373.833-4 chr5 144251789 144252030 + 2.16667 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 46518 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 353.5-14 chr4 120977688 120978007 + 2.16667 NA Intergenic Intergenic -54981 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 484.334 chr16 7121989 7122365 + 2.16667 NA intron (NM_018723, intron 4 of 15) L1ME1|LINE|L1 -210668 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 379.667-3 chr11 19209885 19210075 + 2.16667 NA Intergenic L2c|LINE|L2 -7997 NM_001369404 8048 Hs.83577 NM_003476 ENSG00000129170 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine rich protein 3 protein-coding 289.5-10 chr3 160308965 160309113 + 2.16667 NA intron (NM_001190242, intron 8 of 18) MLT1F2|LTR|ERVL-MaLR 74727 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 265.167 chr1 96814564 96814893 + 2.16667 NA non-coding (NR_125356, exon 13 of 13) non-coding (NR_125356, exon 13 of 13) 92090 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 554 chr1 94039314 94039715 + 2.16667 NA intron (NM_000350, intron 24 of 49) intron (NM_000350, intron 24 of 49) 81634 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 239.5-30 chr5 7132209 7132355 + 2.16667 NA Intergenic Intergenic 137072 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 492-4 chr6 167968269 167968591 + 2.16667 NA intron (NM_001366320, intron 31 of 32) intron (NM_001366320, intron 31 of 32) 8509 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 333.667-14 chr9 87812810 87813270 + 2.16667 NA Intergenic Intergenic -31705 NR_033405 1518 Hs.726015 NR_033405 CTSLP8 CTSL1P8 cathepsin L pseudogene 8 pseudo 525.167-3 chr10 26474098 26474467 + 2.16667 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 35941 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 539.166 chr1 38138421 38138961 + 2.16667 NA Intergenic Intergenic 49460 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 334.167-2 chr11 22057374 22057716 + 2.16667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -135540 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 392.334-3 chr5 151620366 151620656 + 2.16667 NA Intergenic Intergenic -51567 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 364-7 chr2 102284993 102285290 + 2.16667 NA Intergenic L2c|LINE|L2 -26361 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 564.667-2 chr8 114958032 114958444 + 2.16667 NA Intergenic Intergenic 709775 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 865.667-2 chr18 68847064 68847862 + 2.16667 NA intron (NM_001093729, intron 6 of 9) intron (NM_001093729, intron 6 of 9) 49383 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 487.5 chr1 31623029 31623336 + 2.16667 NA intron (NM_001525, intron 6 of 8) AluSq2|SINE|Alu 5482 NM_001525 3061 Hs.388226 NM_001525 ENSG00000121764 HCRTR1 OX1R hypocretin receptor 1 protein-coding 334.5-10 chr14 73658588 73658844 + 2.16667 NA intron (NM_001201366, intron 3 of 8) intron (NM_001201366, intron 3 of 8) 13730 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 818.832 chr11 83285979 83286557 + 2.16667 NA 5' UTR (NM_021825, exon 1 of 9) 5' UTR (NM_021825, exon 1 of 9) 139 NM_001286119 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 1160.67-4 chr5 87013222 87014375 + 2.16667 NA Intergenic Intergenic 101156 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 397.334-5 chr8 69008041 69008319 + 2.16667 NA intron (NR_039986, intron 2 of 4) MLT1E3|LTR|ERVL-MaLR 96010 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 251.167-15 chr3 190563248 190563463 + 2.16667 NA intron (NR_157352, intron 2 of 10) intron (NR_157352, intron 2 of 10) 49270 NM_001167930 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 497.001-2 chr2 5161016 5161437 + 2.16667 NA Intergenic Intergenic -505004 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 490.834 chr1 93909714 93910086 + 2.16667 NA promoter-TSS (NM_002061) promoter-TSS (NM_002061) -302 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 570-2 chr17 79065943 79066303 + 2.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -8814 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 373.333-5 chr11 17821947 17822295 + 2.16667 NA intron (NR_104040, intron 11 of 11) intron (NR_104040, intron 11 of 11) 86173 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 415.667-3 chr12 2583229 2583458 + 2.16667 NA intron (NM_199460, intron 15 of 49).2 intron (NM_199460, intron 15 of 49).2 88877 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 388.334-7 chr3 159681047 159681351 + 2.16667 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 87413 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 479.334 chr15 64069123 64069672 + 2.16667 NA Intergenic AluSg7|SINE|Alu -22912 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 640.333-3 chr7 56051490 56051949 + 2.16667 NA promoter-TSS (NM_001009186) promoter-TSS (NM_001009186) -46 NM_001762 908 Hs.82916 NM_001762 ENSG00000146731 CCT6A CCT-zeta|CCT-zeta-1|CCT6|Cctz|HTR3|MoDP-2|TCP-1-zeta|TCP20|TCPZ|TTCP20 chaperonin containing TCP1 subunit 6A protein-coding 729.167-3 chr7 136406036 136406638 + 2.16667 NA Intergenic Intergenic -428978 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 607.5-2 chr2 99336318 99336804 + 2.16667 NA promoter-TSS (NM_015904) promoter-TSS (NM_015904) -228 NM_005783 10190 Hs.536122 NM_005783 ENSG00000115514 TXNDC9 APACD|PHLP3 thioredoxin domain containing 9 protein-coding 304.167-5 chr18 68207893 68208119 + 2.16667 NA Intergenic Intergenic -393184 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 254.167-9 chr12 4629669 4629882 + 2.16667 NA intron (NM_001278309, intron 4 of 5) intron (NM_001278309, intron 4 of 5) 19272 NM_006422 10566 Hs.98397 NM_006422 ENSG00000111254 AKAP3 AKAP 110|AKAP110|CT82|FSP95|HEL159|PRKA3|SOB1 A-kinase anchoring protein 3 protein-coding 341.667-4 chr15 64227637 64227898 + 2.16667 NA intron (NM_001329607, intron 4 of 11) MIRc|SINE|MIR -64612 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 213.334-16 chr9 70748327 70748502 + 2.16667 NA intron (NM_001366143, intron 8 of 25) intron (NM_001366143, intron 8 of 25) 61670 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 381.5-2 chr13 94549476 94549694 + 2.16667 NA promoter-TSS (NM_001322183) promoter-TSS (NM_001322183) -179 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 260.167-21 chr5 164649049 164649420 + 2.16667 NA Intergenic L3|LINE|CR1 178955 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 354.166-3 chr8 29917768 29918271 + 2.16667 NA Intergenic L1PB4|LINE|L1 -3494 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 371.834-3 chr8 126000281 126000531 + 2.16667 NA Intergenic L1ME3|LINE|L1 -49209 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 189.167-10 chr11 103211566 103211717 + 2.16667 NA intron (NM_001377, intron 53 of 88) intron (NM_001377, intron 53 of 88) 102215 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 838.999 chr12 57238971 57239753 + 2.16667 NA intron (NM_020142, intron 1 of 4) CpG 1330 NM_020142 56901 Hs.75069 NM_020142 ENSG00000185633 NDUFA4L2 NUOMS NDUFA4 mitochondrial complex associated like 2 protein-coding 470.833-10 chr3 60161415 60161849 + 2.16667 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -80723 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 484-3 chr16 23581942 23582358 + 2.16667 NA intron (NM_005003, intron 4 of 4) intron (NM_005003, intron 4 of 4) 14166 NM_005003 4706 Hs.189716 NM_005003 ENSG00000004779 NDUFAB1 ACP|ACP1|FASN2A|SDAP NADH:ubiquinone oxidoreductase subunit AB1 protein-coding 215.834-5 chr16 76028894 76029022 + 2.16667 NA Intergenic L1MEc|LINE|L1 -248443 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 530.833-2 chr4 112604734 112605222 + 2.16667 NA intron (NM_018392, intron 9 of 27) intron (NM_018392, intron 9 of 27) -31986 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 632.167 chr1 200952634 200953122 + 2.16667 NA intron (NR_147176, intron 8 of 15) intron (NR_147176, intron 8 of 15) 23934 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 281.167-19 chr5 16077330 16077483 + 2.16667 NA intron (NM_001102562, intron 3 of 3) intron (NM_001102562, intron 3 of 3) 102385 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 404.501-2 chr15 79858713 79858917 + 2.16667 NA intron (NR_037654, intron 2 of 2) intron (NR_037654, intron 2 of 2) 38182 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 368.167-3 chr14 24157998 24158218 + 2.16667 NA intron (NM_001310332, intron 17 of 20) intron (NM_001310332, intron 17 of 20) -3157 NM_006084 10379 Hs.1706 NM_006084 ENSG00000213928 IRF9 IRF-9|ISGF3|ISGF3G|p48 interferon regulatory factor 9 protein-coding 251.167-16 chr4 159192073 159192250 + 2.16667 NA intron (NM_001351724, intron 2 of 30) intron (NM_001351724, intron 2 of 30) -35471 NM_001351726 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 389-3 chr11 104098546 104098855 + 2.16667 NA intron (NM_025208, intron 1 of 6) AluJb|SINE|Alu 62060 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 661.667-2 chr18 71398367 71398954 + 2.16667 NA Intergenic Intergenic 180296 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 565.501 chr19 48842626 48843209 + 2.16667 NA intron (NM_020904, intron 16 of 19) LTR55|LTR|ERVL? -6426 NM_016246 51171 Hs.18788 NM_016246 ENSG00000087076 HSD17B14 DHRS10|SDR47C1|retSDR3 hydroxysteroid 17-beta dehydrogenase 14 protein-coding 252-4 chr1 112772127 112772258 + 2.16667 NA Intergenic L1MC5a|LINE|L1 51625 NM_001004440 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 668.334 chr3 85353426 85353958 + 2.16667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -32018 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 411.166-6 chr4 120437150 120437514 + 2.16667 NA Intergenic Intergenic -370484 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 264.667-5 chr17 40069937 40070227 + 2.16667 NA intron (NM_199334, intron 1 of 8) intron (NM_199334, intron 1 of 8) 7117 NM_003250 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor alpha protein-coding 465.834-3 chr5 57533251 57533512 + 2.16667 NA Intergenic Intergenic -36961 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 369.167-4 chr19 45493164 45493680 + 2.16667 NA promoter-TSS (NM_206901) promoter-TSS (NM_206901) -169 NM_206901 6253 Hs.47517 NM_005619 ENSG00000125744 RTN2 NSP2|NSPL1|NSPLI|SPG12 reticulon 2 protein-coding 494.5-8 chr6 130573848 130574175 + 2.16667 NA Intergenic HY3|scRNA|scRNA 136894 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 228.667-40 chr5 112809379 112809561 + 2.16667 NA intron (NM_001354895, intron 8 of 15) L2|LINE|L2 -51718 NM_001204193 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 190.334-9 chr5 64147786 64148073 + 2.16667 NA Intergenic Intergenic -17914 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 309-16 chr3 40090133 40090410 + 2.16667 NA intron (NM_001284425, intron 3 of 15) intron (NM_001284425, intron 3 of 15) -9740 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 402.167-3 chr14 67363836 67364076 + 2.16667 NA intron (NM_004094, intron 1 of 7) intron (NM_004094, intron 1 of 7) 3628 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 388.334-2 chr10 70252291 70252497 + 2.16667 NA 3' UTR (NM_022146, exon 4 of 4) 3' UTR (NM_022146, exon 4 of 4) -18965 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 351.833-12 chr7 39589586 39589956 + 2.16667 NA intron (NM_001282446, intron 2 of 2) intron (NM_001282446, intron 2 of 2) 23367 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 700.834-3 chr9 27247307 27247898 + 2.16667 NA intron (NR_026679, intron 15 of 16) intron (NR_026679, intron 15 of 16) 35191 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 461.834 chr11 102851547 102851846 + 2.16667 NA Intergenic Intergenic -8087 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 501.334-2 chr13 97028842 97029205 + 2.16667 NA Intergenic Intergenic -34293 NM_001346197 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 730.334-2 chr11 386419 386971 + 2.16667 NA Intergenic MER52D|LTR|ERV1 -5901 NM_001303029 11187 Hs.534395 NM_007183 ENSG00000184363 PKP3 - plakophilin 3 protein-coding 348.167-7 chr3 45837106 45837353 + 2.16667 NA intron (NM_001276379, intron 3 of 9) intron (NM_001276379, intron 3 of 9) 4890 NM_020347 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 468.167-2 chr6 148776044 148776400 + 2.16667 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 29192 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 394.334-4 chr12 24025579 24025852 + 2.16667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -74683 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 259.334-10 chr9 74779229 74779440 + 2.16667 NA intron (NM_017662, intron 23 of 38) intron (NM_017662, intron 23 of 38) 108013 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 378.834-3 chr7 94288731 94289099 + 2.16667 NA Intergenic Intergenic 103277 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 313.167-13 chr6 147748568 147748870 + 2.16667 NA Intergenic Intergenic 240029 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 222.167-35 chr7 94566423 94566582 + 2.16667 NA Intergenic Intergenic 56693 NM_001363428 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 656.001 chr5 115831128 115831594 + 2.16667 NA non-coding (NR_033363, exon 5 of 5) non-coding (NR_033363, exon 5 of 5) 10204 NR_033362 9140 Hs.264482 NM_004707 ENSG00000145782 ATG12 APG12|APG12L|FBR93|HAPG12 autophagy related 12 protein-coding 1003.33-2 chr22 25462304 25462946 + 2.16667 NA TTS (NR_033733) TTS (NR_033733) 6979 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 906.168 chr15 59247171 59247954 + 2.16667 NA intron (NM_004998, intron 4 of 27) MIRb|SINE|MIR 40719 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 443.667-9 chr4 21469431 21469872 + 2.16667 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -4893 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 305.334-13 chr8 99201506 99201691 + 2.16667 NA intron (NM_017890, intron 17 of 61) intron (NM_017890, intron 17 of 61) 188332 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 451.167-2 chr8 118538764 118539078 + 2.16667 NA intron (NM_001101676, intron 2 of 4) MIRb|SINE|MIR -82080 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 468.333-4 chr8 14491480 14491827 + 2.16667 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 361857 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 408-4 chr2 58494577 58494889 + 2.16667 NA Intergenic Intergenic -26020 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 735.834 chr16 84925108 84925701 + 2.16667 NA Intergenic Intergenic 86131 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 790.834-2 chr5 5891307 5891839 + 2.16667 NA Intergenic Intergenic 445719 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 267.333-5 chr12 10558965 10559164 + 2.16667 NA TTS (NR_146455) TTS (NR_146455) 5685 NR_146455 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 407.833-4 chr3 103298670 103298938 + 2.16667 NA Intergenic Intergenic 225312 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 451.499 chr12 40395399 40395778 + 2.16667 NA intron (NM_173600, intron 1 of 173) Tigger1|DNA|TcMar-Tigger 2194 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 388.334-9 chr4 65033837 65034108 + 2.16667 NA Intergenic Intergenic -29472 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 367.667-7 chr5 19332002 19332323 + 2.16667 NA Intergenic Intergenic 554110 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 479-3 chr16 2983877 2984361 + 2.16667 NA Intergenic AluSq2|SINE|Alu -3673 NM_182687 9088 Hs.732385 NM_004203 ENSG00000127564 PKMYT1 MYT1|PPP1R126 protein kinase, membrane associated tyrosine/threonine 1 protein-coding 339-8 chr2 51337639 51337839 + 2.16667 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 305138 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 461.167-3 chr11 123407298 123407592 + 2.16667 NA intron (NM_001367419, intron 1 of 20) intron (NM_001367419, intron 1 of 20) -22824 NM_001354837 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 417.166-5 chr17 62109222 62109742 + 2.16667 NA Intergenic Intergenic -44204 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 678-3 chr9 31800234 31800851 + 2.16667 NA Intergenic L1MA4|LINE|L1 -419052 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 408.834 chr1 69151583 69151903 + 2.16667 NA intron (NR_146608, intron 3 of 4) Charlie7|DNA|hAT-Charlie 95845 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 650.834 chr10 102399266 102399941 + 2.16667 NA exon (NM_002502, exon 14 of 23) exon (NM_002502, exon 14 of 23) 3898 NM_001322934 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 414-5 chr5 42908821 42909355 + 2.16667 NA Intergenic MER1B|DNA|hAT-Charlie 84245 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 354.167 chr1 211680423 211680984 + 2.16667 NA intron (NR_148994, intron 2 of 3) L2a|LINE|L2 4941 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 478.5-6 chr17 71051030 71051271 + 2.16667 NA Intergenic Intergenic 151029 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 220.834-10 chr9 88916957 88917171 + 2.16667 NA Intergenic MER107|DNA|hAT-Charlie -73799 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 388.834 chr20 34022204 34022701 + 2.16667 NA intron (NM_007367, intron 1 of 8) intron (NM_007367, intron 1 of 8) -26667 NR_039911 100616434 NR_039911 ENSG00000264616 MIR4755 mir-4755 microRNA 4755 ncRNA 365.001-3 chr6 141397204 141397525 + 2.16667 NA Intergenic Intergenic 691435 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 315.834 chr1 8702579 8702810 + 2.16667 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 114946 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 733.667-2 chr3 117058618 117059977 + 2.16667 NA Intergenic Intergenic 137866 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 247.167-16 chr4 60877452 60877591 + 2.16667 NA Intergenic L1PA13|LINE|L1 -45098 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 666.001-2 chr5 98773189 98773859 + 2.16667 NA promoter-TSS (NM_001366508) promoter-TSS (NM_001366508) -139 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 588.167 chr1 24830584 24831160 + 2.16667 NA intron (NM_013943, intron 4 of 5) intron (NM_013943, intron 4 of 5) 85425 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 194.667-50 chr6 161068963 161069130 + 2.16667 NA intron (NM_001291958, intron 4 of 27) intron (NM_001291958, intron 4 of 27) 77277 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 443.667-4 chr11 134050203 134050596 + 2.16667 NA Intergenic AluJb|SINE|Alu 18127 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LINC02731 - long intergenic non-protein coding RNA 2731 ncRNA 363.5 chr10 11945903 11946127 + 2.16667 NA intron (NM_080599, intron 16 of 21) intron (NM_080599, intron 16 of 21) -51305 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 354.334-2 chr9 30258276 30258533 + 2.16667 NA Intergenic L1MEg|LINE|L1 150050 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 417.834-2 chr18 13726623 13726914 + 2.16667 NA promoter-TSS (NM_001098801) promoter-TSS (NM_001098801) 95 NM_003799 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 517.834 chr1 208021520 208022011 + 2.16667 NA TTS (NM_025179) TTS (NM_025179) -110640 NM_001773 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 301.667-14 chr3 169048656 169048938 + 2.16667 NA Intergenic Intergenic 96726 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 214.667-28 chr3 124550576 124551034 + 2.16667 NA intron (NM_001024660, intron 33 of 59) AluY|SINE|Alu -33853 NM_001322995 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 488.501 chr4 37234109 37234359 + 2.16667 NA Intergenic Intergenic 7757 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 196.167-8 chr12 27956345 27956493 + 2.16667 NA Intergenic Intergenic 13557 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 372.5-6 chr16 87550362 87550702 + 2.16667 NA Intergenic Intergenic -51303 NR_073379 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 254-18 chr3 96707544 96707705 + 2.16667 NA Intergenic Intergenic -106970 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 532.667 chr10 52979680 52980048 + 2.16667 NA Intergenic L1MB7|LINE|L1 -208164 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 772.167-3 chr17 43360271 43361246 + 2.16667 NA Intergenic Intergenic 28140 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 400-13 chrX 68828798 68829204 + 2.16667 NA promoter-TSS (NM_004429) promoter-TSS (NM_004429) 4 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 328.166-8 chr7 51585314 51585585 + 2.16667 NA Intergenic Intergenic -192193 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 395.001 chr11 44142696 44142887 + 2.16667 NA intron (NM_207122, intron 7 of 13) intron (NM_207122, intron 7 of 13) 46594 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 627.667 chr20 21615468 21616000 + 2.16667 NA TTS (NR_109880) TTS (NR_109880) 45710 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 580.001 chr6 55872441 55872782 + 2.16667 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 2979 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 689.5 chr1 185169999 185170971 + 2.16667 NA intron (NM_017673, intron 4 of 18) intron (NM_017673, intron 4 of 18) 13318 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 602.333 chr2 192399429 192399914 + 2.16667 NA Intergenic MIRb|SINE|MIR -204738 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 359.5-7 chr6 83265397 83265726 + 2.16667 NA intron (NM_002395, intron 6 of 13) AluJb|SINE|Alu -71661 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 210.5-30 chr4 31907274 31907474 + 2.16667 NA Intergenic Intergenic -90005 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 664.667-3 chr11 60899310 60899925 + 2.16667 NA intron (NM_014502, intron 10 of 15) MER3|DNA|hAT-Charlie 6968 NM_014502 27339 Hs.502705 NM_014502 ENSG00000110107 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 918.167 chr5 53425941 53426637 + 2.16667 NA Intergenic Intergenic -54340 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 273.666-5 chr21 23919861 23920125 + 2.16667 NA Intergenic L1PB4|LINE|L1 401384 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 246.333-37 chr7 47823480 47823701 + 2.16667 NA intron (NM_138295, intron 45 of 56) L1MC5|LINE|L1 28299 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 444.667-4 chr14 72516822 72517092 + 2.16667 NA TTS (NR_106994) TTS (NR_106994) 137 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 387.667 chr1 190756522 190756824 + 2.16667 NA intron (NR_033922, intron 2 of 4) MLT2A2|LTR|ERVL 131783 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 330.5-7 chr3 89345013 89345360 + 2.16667 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 237565 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 350.334-4 chr12 24368114 24368382 + 2.16667 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 144977 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 538.834-2 chrX 132233045 132233358 + 2.16667 NA intron (NR_110410, intron 1 of 2) L1MB8|LINE|L1 -13721 NR_073150 57826 Hs.119889 NM_021183 ENSG00000123728 RAP2C - RAP2C, member of RAS oncogene family protein-coding 304.999 chr10 59631687 59631930 + 2.16667 NA Intergenic L1ME2|LINE|L1 78083 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 462.667 chr4 114085267 114085513 + 2.16667 NA Intergenic Intergenic -105743 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 572.167-2 chr6 5030442 5031117 + 2.16667 NA intron (NR_126018, intron 1 of 1) intron (NR_126018, intron 1 of 1) 807 NR_126018 100129461 Hs.131700 NR_126015 ENSG00000272142 LYRM4-AS1 - LYRM4 antisense RNA 1 ncRNA 335.834-7 chr20 13960468 13960916 + 2.16667 NA intron (NM_001363752, intron 1 of 16) intron (NM_001363752, intron 1 of 16) 29922 NM_001271539 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 331-14 chr2 67322717 67323111 + 2.16667 NA Intergenic Intergenic -74419 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 339.834-3 chr17 75270276 75270588 + 2.16667 NA promoter-TSS (NM_001242500) promoter-TSS (NM_001242500) -187 NM_001242501 57409 Hs.325631 NM_020679 ENSG00000125457 MIF4GD AD023|MIFD|SLIP1 MIF4G domain containing protein-coding 247.166 chr2 44125851 44126025 + 2.16667 NA Intergenic Intergenic -42865 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 324.667-16 chr22 27612914 27613189 + 2.16667 NA Intergenic MIRc|SINE|MIR 188705 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 263.167-8 chr16 76861529 76861728 + 2.16667 NA Intergenic L1MC4|LINE|L1 -7308 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 596.168 chr11 67351143 67351635 + 2.16667 NA non-coding (NR_046411, exon 4 of 4) non-coding (NR_046411, exon 4 of 4) 2157 NM_021173 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 299-15 chr4 80295724 80295938 + 2.16667 NA Intergenic Intergenic 27566 NM_001291812 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 427.499 chr20 21907728 21908045 + 2.16667 NA Intergenic Intergenic -146204 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 600.667-2 chr6 112312210 112312615 + 2.16667 NA Intergenic Intergenic -34918 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 371.501 chr14 20683639 20684028 + 2.16667 NA promoter-TSS (NM_001282192) promoter-TSS (NM_001282192) -344 NM_001145 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 378.333-4 chr14 49306303 49306626 + 2.16667 NA Intergenic Intergenic 279916 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 311.5-6 chr15 65297866 65298322 + 2.16667 NA Intergenic Intergenic 2043 NR_002756 26831 NR_002756 ENSG00000199568 RNU5A-1 RNU5|RNU5A|RNU5C|U5A|U5B1 RNA, U5A small nuclear 1 snRNA 414.833 chr1 45686656 45687337 + 2.16667 NA promoter-TSS (NM_021639) promoter-TSS (NM_021639) -463 NM_021639 60313 Hs.238432 NM_021639 ENSG00000159592 GPBP1L1 SP192 GC-rich promoter binding protein 1 like 1 protein-coding 278.834-11 chr6 28474308 28474612 + 2.16667 NA Intergenic Intergenic -30969 NM_001012455 222696 Hs.721841 NM_001012455 ENSG00000187987 ZSCAN23 ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1 zinc finger and SCAN domain containing 23 protein-coding 515.501 chr1 169928838 169929290 + 2.16667 NA intron (NM_014970, intron 19 of 19) intron (NM_014970, intron 19 of 19) -35105 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 479.667-6 chr6 162802280 162802636 + 2.16667 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 74488 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 616.667-3 chr4 48445590 48446179 + 2.16667 NA Intergenic (TTTTATT)n|Simple_repeat|Simple_repeat -37459 NM_152679 201780 Hs.132591 NM_152679 ENSG00000145248 SLC10A4 P4 solute carrier family 10 member 4 protein-coding 318-8 chr17 7879008 7879171 + 2.16667 NA intron (NM_001330111, intron 2 of 4) intron (NM_001330111, intron 2 of 4) -5707 NM_001005271 1107 Hs.25601 NM_005852 ENSG00000170004 CHD3 Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH chromodomain helicase DNA binding protein 3 protein-coding 457.834-2 chr17 67528815 67529317 + 2.16667 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -57481 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 483.834-3 chr4 76373709 76374065 + 2.16667 NA intron (NM_001042784, intron 8 of 23) intron (NM_001042784, intron 8 of 23) 33418 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 766.666 chr20 5222874 5223790 + 2.16667 NA Intergenic Intergenic 93400 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 646.334-3 chr8 108563057 108563607 + 2.16667 NA Intergenic L1MDa|LINE|L1 119708 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 384.833-4 chr14 50677712 50678053 + 2.16667 NA Intergenic Intergenic -9576 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 402.334-8 chr8 127524775 127525083 + 2.16667 NA Intergenic (AATAC)n|Simple_repeat|Simple_repeat -42790 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 417.166-3 chr12 126219261 126219805 + 2.16667 NA Intergenic Intergenic 123541 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 227.667-11 chr13 100236123 100236272 + 2.16667 NA intron (NM_001352612, intron 8 of 21) intron (NM_001352612, intron 8 of 21) 147104 NR_148030 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 260.333-11 chr2 152514494 152514652 + 2.16667 NA intron (NM_052905, intron 1 of 25) MER44A|DNA|TcMar-Tigger 179399 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 551.834-3 chr2 27191417 27192137 + 2.16667 NA Intergenic Intergenic -20254 NM_080592 51374 Hs.9527 NM_016085 ENSG00000138085 ATRAID APR--3|APR-3|APR3|C2orf28|HSPC013|PRO240|p18 all-trans retinoic acid induced differentiation factor protein-coding 408.501 chr14 99518390 99518642 + 2.16667 NA intron (NM_001144995, intron 3 of 5) intron (NM_001144995, intron 3 of 5) 37107 NM_001099402 8812 Hs.510409 NM_003858 ENSG00000090061 CCNK CPR4|IDDHDF cyclin K protein-coding 404.667 chr11 88014017 88014310 + 2.16667 NA Intergenic MIRb|SINE|MIR 161280 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 430.334 chr1 114033216 114033419 + 2.16667 NA Intergenic Intergenic 53843 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 737.834-2 chr2 152189845 152190341 + 2.16667 NA Intergenic Intergenic -14330 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 426.834-2 chr15 46386638 46387064 + 2.16667 NA Intergenic Intergenic 681656 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 596.334 chr11 68383944 68384670 + 2.16667 NA intron (NM_002335, intron 5 of 22) intron (NM_002335, intron 5 of 22) 71716 NM_001291902 4041 Hs.6347 NM_002335 ENSG00000162337 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2 LDL receptor related protein 5 protein-coding 614.167-4 chr6 14066949 14067352 + 2.16667 NA Intergenic Intergenic -50106 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 189.834 chr14 53422621 53422745 + 2.16667 NA Intergenic L1M4c|LINE|L1 269329 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 553.333-2 chr13 27375446 27375941 + 2.16667 NA Intergenic Intergenic -48926 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 331.167-7 chr17 61576845 61577295 + 2.16667 NA Intergenic Intergenic 14149 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 198-15 chr16 71440001 71440123 + 2.16667 NA intron (NM_001367365, intron 1 of 9) L1MB5|LINE|L1 1992 NM_001367365 385.167-12 chr8 87885283 87885662 + 2.16667 NA Intergenic Charlie21a|DNA|hAT-Charlie -11457 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 389.334-2 chr11 25982160 25982624 + 2.16667 NA Intergenic GA-rich|Low_complexity|Low_complexity -206731 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 412.001 chr1 229125372 229125611 + 2.16667 NA Intergenic Intergenic 49310 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 569.834-3 chr14 77963534 77964005 + 2.16667 NA Intergenic Intergenic 163660 NR_158988 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 429 chr10 68406102 68406402 + 2.16667 NA intron (NR_103476, intron 1 of 18) intron (NR_103476, intron 1 of 18) 937 NM_017987 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 345.334-4 chr16 87875260 87875467 + 2.16667 NA Intergenic PRIMA4_LTR|LTR|ERV1 -5856 NM_003486 8140 Hs.513797 NM_003486 ENSG00000103257 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16 solute carrier family 7 member 5 protein-coding 833.167 chr10 74176037 74176723 + 2.16667 NA promoter-TSS (NM_001202449) promoter-TSS (NM_001202449) -109 NM_001123 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 480.667-5 chr3 24048720 24049037 + 2.16667 NA Intergenic Intergenic 54369 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 366-8 chr3 151775812 151776121 + 2.16667 NA intron (NR_026915, intron 2 of 2) intron (NR_026915, intron 2 of 2) 5510 NR_026915 201651 Hs.383050 NR_026915 ENSG00000240602 AADACP1 - arylacetamide deacetylase pseudogene 1 pseudo 610.167 chr19 18204069 18204651 + 2.16667 NA promoter-TSS (NM_002866) promoter-TSS (NM_002866) -318 NM_002866 5864 Hs.27744 NM_002866 ENSG00000105649 RAB3A - RAB3A, member RAS oncogene family protein-coding 973.835 chr4 86043547 86044604 + 2.16667 NA intron (NM_001363657, intron 11 of 13) intron (NM_001363657, intron 11 of 13) -75731 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 478.833-5 chr4 90025179 90025635 + 2.16667 NA Intergenic Intergenic -102126 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 456.501 chr16 83216643 83217020 + 2.16667 NA intron (NM_001220490, intron 3 of 12) (TA)n|Simple_repeat|Simple_repeat -226533 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 276.334-5 chr17 56786020 56786294 + 2.16667 NA Intergenic Intergenic 47763 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 511.334-3 chr3 57170074 57170567 + 2.16667 NA promoter-TSS (NM_001318864) promoter-TSS (NM_001318864) -3 NM_001318864 54756 Hs.150725 NM_017563 ENSG00000144730 IL17RD HH18|IL-17RD|IL17RLM|SEF interleukin 17 receptor D protein-coding 424.5-6 chr13 84604451 84604805 + 2.16667 NA intron (NR_046871, intron 6 of 6) L1MA4A|LINE|L1 -179026 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 417.333 chr10 91296725 91296984 + 2.16667 NA Intergenic Intergenic 76191 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 281.667-9 chr16 60820665 60820838 + 2.16667 NA Intergenic Intergenic 235015 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 536.5-2 chr2 55360090 55360539 + 2.16667 NA intron (NM_001254943, intron 7 of 33) intron (NM_001254943, intron 7 of 33) 59542 NM_001365480 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 387.5-3 chr15 66287267 66287574 + 2.16667 NA Intergenic Intergenic -5889 NM_001323937 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 513.001 chr1 180881665 180882324 + 2.16667 NA intron (NR_137330, intron 12 of 12) intron (NR_137330, intron 12 of 12) -30903 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 321.667-12 chr8 10838646 10839184 + 2.16667 NA intron (NM_001284356, intron 1 of 5) intron (NM_001284356, intron 1 of 5) 960 NM_017884 54984 Hs.490991 NM_017884 ENSG00000254093 PINX1 Gno1|LPTL|LPTS|Pxr1 PIN2 (TERF1) interacting telomerase inhibitor 1 protein-coding 308.167-3 chr11 94895770 94896199 + 2.16667 NA Intergenic Intergenic 77572 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 289.666-5 chr5 38313547 38313803 + 2.16667 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -22689 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 493.667-3 chr3 126198109 126198642 + 2.16667 NA intron (NR_046383, intron 1 of 1) intron (NR_046383, intron 1 of 1) -17189 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 301.167-17 chr6 75789467 75789647 + 2.16667 NA intron (NM_001368139, intron 2 of 9) intron (NM_001368139, intron 2 of 9) 40318 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 177.167-5 chr10 101272357 101272643 + 2.16667 NA Intergenic Intergenic -8950 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LINC02681 - long intergenic non-protein coding RNA 2681 ncRNA 304.667-20 chr7 66952637 66952806 + 2.16667 NA intron (NM_017994, intron 5 of 6) intron (NM_017994, intron 5 of 6) 31496 NM_017994 55069 Hs.488478 NM_017994 ENSG00000106609 TMEM248 C7orf42 transmembrane protein 248 protein-coding 187.333-29 chr3 138119020 138119138 + 2.16667 NA Intergenic Intergenic -3471 NM_173543 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2|PKD5 DAZ interacting zinc finger protein 1 like protein-coding 180.667-41 chr6 113080847 113080987 + 2.16667 NA Intergenic Intergenic 352530 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 456.667-3 chr2 191390108 191390494 + 2.16667 NA exon (NM_001330238, exon 18 of 30) exon (NM_001330238, exon 18 of 30) 144897 NM_012223 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 226-26 chr20 31382321 31382528 + 2.16667 NA intron (NR_073153, intron 1 of 2) MIR|SINE|MIR 8166 NM_001271209 245932 Hs.516998 NM_153289 ENSG00000180483 DEFB119 DEFB-19|DEFB-20|DEFB120|DEFB20|ESC42-RELA|ESC42-RELB defensin beta 119 protein-coding 564.167-5 chr7 133853705 133854573 + 2.16667 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) -29251 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 197.667-30 chr2 139857792 139857964 + 2.16667 NA Intergenic Intergenic 728807 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 354.667 chr1 50749838 50750186 + 2.16667 NA intron (NM_007051, intron 4 of 18) MIRb|SINE|MIR 210255 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 400.167 chr1 246698931 246699374 + 2.16667 NA Intergenic Intergenic -25257 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 254.667-36 chrX 84907573 84907759 + 2.16667 NA Intergenic Intergenic -26485 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 706.667 chr17 42824018 42824645 + 2.16667 NA promoter-TSS (NM_001313998) promoter-TSS (NM_001313998) -15 NM_001314000 8678 Hs.716464 NM_003766 ENSG00000126581 BECN1 ATG6|VPS30|beclin1 beclin 1 protein-coding 498.001-3 chr8 108724610 108724931 + 2.16667 NA intron (NR_136411, intron 1 of 3) MamTip2|DNA|hAT-Tip100 62824 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 265.834-6 chr5 93134636 93134813 + 2.16667 NA Intergenic Intergenic 436619 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 474.501 chr2 154688621 154688863 + 2.16667 NA Intergenic Intergenic -9839 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 282.334 chr10 50310315 50310660 + 2.16667 NA intron (NM_147156, intron 9 of 10) L1ME3C|LINE|L1 -61877 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 530.834 chr1 245776134 245776388 + 2.16667 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) -541744 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 825.834-2 chr6 39309769 39310652 + 2.16667 NA intron (NM_001135111, intron 2 of 5) intron (NM_001135111, intron 2 of 5) 4209 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 492.834-2 chr5 25544407 25544870 + 2.16667 NA Intergenic Intergenic 353685 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 691.167-3 chr9 121400044 121400863 + 2.16667 NA Intergenic (TCAT)n|Simple_repeat|Simple_repeat -30149 NM_001270527 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 194.334-10 chr8 64375359 64375462 + 2.16667 NA intron (NR_109792, intron 1 of 2) intron (NR_109792, intron 1 of 2) -1917 NR_034103 100130155 Hs.7023 NR_034102 ENSG00000254377 MIR124-2HG LINC00966 MIR124-2 host gene ncRNA 481-2 chr14 72627127 72627450 + 2.16667 NA intron (NM_001280542, intron 9 of 10) L1MC4a|LINE|L1 110468 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 413.501 chr1 75265639 75266090 + 2.16667 NA intron (NM_001320283, intron 4 of 21) intron (NM_001320283, intron 4 of 21) 131476 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 453.834-2 chr17 58308243 58308673 + 2.16667 NA intron (NM_024418, intron 21 of 30) intron (NM_024418, intron 21 of 30) -16992 NR_038410 100506779 Hs.718477 NR_038410 ENSG00000265148 TSPOAP1-AS1 BZRAP1-AS1 TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 ncRNA 485.667-2 chr14 54677959 54678409 + 2.16667 NA intron (NM_015589, intron 1 of 11) MER39|LTR|ERV1 -76649 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 464.834-5 chr9 72823142 72823642 + 2.16667 NA intron (NM_138691, intron 20 of 23) intron (NM_138691, intron 20 of 23) 50717 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 585.501-2 chr3 192802925 192803417 + 2.16667 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) -75630 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 815.168 chr15 57138258 57138891 + 2.16667 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -80856 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 383.833-11 chr5 175344262 175344649 + 2.16667 NA Intergenic MER77|LTR|ERVL 99727 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 214.667-11 chr18 53002061 53002191 + 2.16667 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -234975 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 381.167-8 chr5 19382501 19382999 + 2.16667 NA Intergenic L3|LINE|CR1 503522 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 458.834 chr2 18698681 18698962 + 2.16667 NA Intergenic L1MA9|LINE|L1 -109241 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 406.167-4 chr10 127522593 127522826 + 2.16667 NA Intergenic Intergenic -26640 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 534.167-2 chr12 22082216 22082765 + 2.16667 NA Intergenic LTR16A|LTR|ERVL 36272 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 264.334-6 chr2 38362929 38363117 + 2.16667 NA intron (NM_001330462, intron 1 of 13) intron (NM_001330462, intron 1 of 13) 13507 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 198.667-44 chr7 36661458 36661763 + 2.16667 NA intron (NM_001177507, intron 2 of 19) intron (NM_001177507, intron 2 of 19) -61490 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 185.667-25 chr19 41262405 41262560 + 2.16667 NA promoter-TSS (NM_144732) promoter-TSS (NM_144732) -75 NM_144732 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 193.667-46 chr5 141245105 141245385 + 2.16667 NA promoter-TSS (NM_018935) promoter-TSS (NM_018935) -150 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 390.5-9 chr6 48526344 48526559 + 2.16667 NA Intergenic Intergenic -457762 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 791.501-2 chrX 55717744 55718477 + 2.16667 NA non-coding (NR_148685, exon 1 of 13) non-coding (NR_148685, exon 1 of 13) 361 NR_148692 10325 Hs.50282 NM_006064 ENSG00000083750 RRAGB RAGB|bA465E19.1 Ras related GTP binding B protein-coding 367.666-2 chr11 9698968 9699437 + 2.16667 NA intron (NM_001297714, intron 2 of 10) L1MB7|LINE|L1 35125 NM_001297714 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 305-15 chr5 66504791 66505251 + 2.16667 NA Intergenic Intergenic 6583 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 244.667-24 chr3 116412245 116412417 + 2.16667 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 33156 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 270.833-7 chr15 59585568 59585797 + 2.16667 NA Intergenic LTR49-int|LTR|ERV1 -26101 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 372.001-2 chr22 28331019 28331324 + 2.16667 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR -128698 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 711.501 chr7 44857936 44858961 + 2.16667 NA Intergenic AluSx1|SINE|Alu -10322 NM_201517 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 488.333-5 chr6 61650679 61651012 + 2.16667 NA intron (NR_146874, intron 13 of 13) L3b|LINE|CR1 76715 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 227.167-26 chr8 91938937 91939153 + 2.16667 NA Intergenic MLT1N2|LTR|ERVL-MaLR 78635 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 346.667-12 chr7 39884623 39884820 + 2.16667 NA Intergenic Intergenic 64698 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 288.833-17 chr8 28004532 28004924 + 2.16667 NA Intergenic L3|LINE|CR1 -12055 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 183.167-2 chr10 90754139 90754287 + 2.16667 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 103826 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 187.167-7 chr10 74450582 74450669 + 2.16667 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 78699 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 342.001 chr15 36559182 36559359 + 2.16667 NA Intergenic Intergenic -20356 NM_001321757 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 388.501 chr12 65894869 65895183 + 2.16667 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -12701 NR_158985 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 453.001-3 chr8 121086876 121087261 + 2.16667 NA Intergenic Charlie17b|DNA|hAT-Charlie -275022 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 655.834-2 chr7 82740078 82740933 + 2.16667 NA Intergenic Intergenic -296549 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 279-20 chr20 44568310 44568444 + 2.16667 NA intron (NM_007066, intron 1 of 3) L1ME4a|LINE|L1 -14202 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 499.834-2 chr22 25759574 25760325 + 2.16667 NA intron (NM_001318245, intron 1 of 43) L1ME4c|LINE|L1 17761 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 515.167-4 chr6 63776124 63776728 + 2.16667 NA intron (NM_001292009, intron 40 of 43) MIRc|SINE|MIR -30410 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 216-10 chr13 70444548 70444662 + 2.16667 NA Intergenic Intergenic -336112 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 777.168 chr6 100719851 100720678 + 2.16667 NA intron (NM_006828, intron 11 of 41) intron (NM_006828, intron 11 of 41) 161065 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 445-2 chr12 127926307 127926667 + 2.16667 NA intron (NR_046392, intron 1 of 4) intron (NR_046392, intron 1 of 4) 11077 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 306.5-9 chr18 12743893 12744261 + 2.16667 NA intron (NR_110763, intron 1 of 1) L1ME4a|LINE|L1 5345 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 524.334 chr20 60271584 60272160 + 2.16667 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -36602 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 475.333-5 chr22 43034064 43034368 + 2.16667 NA Intergenic Intergenic -4369 NR_125362 100506679 Hs.706553 NR_125362 ENSG00000230319 LOC100506679 - uncharacterized LOC100506679 ncRNA 350.333-5 chr15 93035885 93036141 + 2.16667 NA 3' UTR (NM_001166288, exon 4 of 4) 3' UTR (NM_001166288, exon 4 of 4) 37143 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 347-8 chr15 47986875 47987153 + 2.16667 NA Intergenic Intergenic -133976 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 463.001-3 chr14 61695719 61695957 + 2.16667 NA promoter-TSS (NR_047116) promoter-TSS (NR_047116) -15 NR_047116 100750246 Hs.713476 NR_047116 ENSG00000258777 HIF1A-AS1 5'aHIF-1A|5'aHIF1alpha HIF1A antisense RNA 1 ncRNA 399.834-2 chr3 123881237 123881611 + 2.16667 NA intron (NM_001321309, intron 1 of 32) intron (NM_001321309, intron 1 of 32) 2908 NM_053026 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 343.5-15 chr7 53756699 53756977 + 2.16667 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 55093 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 352.334-2 chr15 100475066 100475383 + 2.16667 NA intron (NM_001290341, intron 10 of 13) intron (NM_001290341, intron 10 of 13) 69062 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 850.667 chr1 115138448 115139353 + 2.16667 NA Intergenic L2a|LINE|L2 -49397 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 260.667-2 chr1 40612221 40612491 + 2.16667 NA Intergenic LTR41B|LTR|ERVL 53326 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 237.667-13 chr16 89512646 89512787 + 2.16667 NA intron (NM_001363850, intron 2 of 17) intron (NM_001363850, intron 2 of 17) 4313 NM_003119 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7 matrix AAA peptidase subunit, paraplegin protein-coding 403.667-8 chrX 93844583 93844784 + 2.16667 NA Intergenic L1PA16|LINE|L1 170477 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 494 chr1 167057163 167057481 + 2.16667 NA intron (NM_005814, intron 4 of 6) intron (NM_005814, intron 4 of 6) 33055 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 444 chr11 3170320 3170639 + 2.16667 NA Intergenic Intergenic -5169 NM_020896 114879 Hs.436166 NM_020896 ENSG00000021762 OSBPL5 OBPH1|ORP5 oxysterol binding protein like 5 protein-coding 390.667-5 chr9 118522036 118522470 + 2.16667 NA Intergenic Intergenic -157418 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 381-4 chr11 35084123 35084377 + 2.16667 NA Intergenic Intergenic 53782 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 483.334-4 chr7 12683529 12684194 + 2.16667 NA Intergenic MER119|DNA|hAT-Charlie -2966 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 446.334-2 chr10 78133321 78133608 + 2.16667 NA Intergenic L1ME3F|LINE|L1 99601 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 562.167 chr12 125330561 125331319 + 2.16667 NA intron (NM_052907, intron 1 of 8) AluJr4|SINE|Alu 4324 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 357-5 chr16 17839287 17839643 + 2.16667 NA Intergenic MER5B|DNA|hAT-Charlie -368505 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 302.834-4 chr2 152586614 152586908 + 2.16667 NA intron (NM_052905, intron 9 of 25) intron (NM_052905, intron 9 of 25) 130700 NM_001365599 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 429.5-9 chr7 94652418 94652670 + 2.16667 NA intron (NM_001346719, intron 1 of 12) intron (NM_001346719, intron 1 of 12) 3589 NM_001346717 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 634.167-3 chr4 54961195 54961977 + 2.16667 NA Intergenic Intergenic 164009 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 338.5-14 chr9 81814990 81815251 + 2.16667 NA Intergenic Intergenic -98317 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 906.333-3 chr12 9049493 9050226 + 2.16667 NA Intergenic Intergenic 15211 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 399.001-3 chr8 110052959 110053233 + 2.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie -77325 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 342.501 chr3 85062395 85062757 + 2.16667 NA promoter-TSS (NR_132777) promoter-TSS (NR_132777) -312 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 350.334-12 chr6 62638847 62639034 + 2.16667 NA Intergenic Intergenic -352713 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 202.5-41 chr4 2021262 2021357 + 2.16667 NA Intergenic L1P4|LINE|L1 -12335 NM_005663 7469 Hs.21771 NM_005663 ENSG00000185049 NELFA NELF-A|P/OKcl.15|WHSC2 negative elongation factor complex member A protein-coding 426.834-4 chr9 75077775 75078125 + 2.16667 NA intron (NM_001127603, intron 2 of 7) intron (NM_001127603, intron 2 of 7) 10205 NM_001330679 54981 Hs.494186 NM_017881 ENSG00000106733 NMRK1 C9orf95|NRK1|bA235O14.2 nicotinamide riboside kinase 1 protein-coding 509.5-2 chr14 70085898 70086374 + 2.16667 NA intron (NM_033262, intron 2 of 7) MIR|SINE|MIR -5919 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 584.834 chr1 87051060 87051522 + 2.16667 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) -78474 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 637.501 chr7 97845408 97845835 + 2.16667 NA Intergenic (ACTAATT)n|Simple_repeat|Simple_repeat 26544 NM_133436 440 Hs.489207 NM_001673 ENSG00000070669 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 185-23 chr17 45124046 45124146 + 2.16667 NA intron (NM_133373, intron 1 of 14) intron (NM_133373, intron 1 of 14) 8419 NM_133373 113026 Hs.380094 NM_133373 ENSG00000161714 PLCD3 PLC-delta-3 phospholipase C delta 3 protein-coding 387-2 chr11 111604337 111604573 + 2.16667 NA intron (NM_015191, intron 1 of 14) intron (NM_015191, intron 1 of 14) 2006 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 618.167 chr10 103346920 103347452 + 2.16667 NA intron (NM_001011663, intron 5 of 9) intron (NM_001011663, intron 5 of 9) 3954 NM_001011663 84108 Hs.335808 NM_032154 ENSG00000156374 PCGF6 MBLR|RNF134 polycomb group ring finger 6 protein-coding 1009.17 chr1 114428087 114428730 + 2.16667 NA intron (NM_015906, intron 6 of 19) intron (NM_015906, intron 6 of 19) 82795 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 417.5-7 chr15 69478007 69478599 + 2.16667 NA Intergenic Intergenic 25485 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 315.334-7 chr4 30484282 30484586 + 2.16667 NA Intergenic L1MA7|LINE|L1 -235935 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 462.834-3 chr3 11239082 11239424 + 2.16667 NA intron (NM_001098211, intron 1 of 1) L1MB7|LINE|L1 13272 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 197.834-5 chr1 170899391 170899503 + 2.16667 NA Intergenic Intergenic -36024 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 174.167-9 chr15 52094003 52094096 + 2.16667 NA Intergenic Intergenic 18726 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 271.5-18 chr2 80073091 80073490 + 2.16667 NA intron (NM_001282598, intron 7 of 17) LTR55|LTR|ERVL? -206707 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 430.333-2 chr19 33228023 33228242 + 2.16667 NA Intergenic L1ME3A|LINE|L1 -2282 NM_019849 56301 Hs.58679 NM_019849 ENSG00000130876 SLC7A10 ASC1|HASC-1|asc-1 solute carrier family 7 member 10 protein-coding 300.166 chr14 80364235 80364606 + 2.16667 NA intron (NR_038355, intron 3 of 8) intron (NR_038355, intron 3 of 8) -133363 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 324.667-10 chr15 89575261 89575501 + 2.16667 NA promoter-TSS (NM_152259) promoter-TSS (NM_152259) -88 NM_152259 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 197.167-18 chr19 33767933 33768047 + 2.16667 NA intron (NM_001127895, intron 3 of 4) intron (NM_001127895, intron 3 of 4) -28880 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 426.668 chr12 6493805 6494109 + 2.16667 NA promoter-TSS (NM_016497) promoter-TSS (NM_016497) -145 NM_014865 9918 Hs.5719 NM_014865 ENSG00000010292 NCAPD2 CAP-D2|CNAP1|MCPH21|hCAP-D2 non-SMC condensin I complex subunit D2 protein-coding 308-4 chr10 122396265 122396486 + 2.16667 NA intron (NM_001330178, intron 3 of 13) intron (NM_001330178, intron 3 of 13) 4072 NM_021622 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 273.834-6 chr5 73196720 73196926 + 2.16667 NA non-coding (NR_134291, exon 3 of 3) non-coding (NR_134291, exon 3 of 3) 5138 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 610.501 chr2 79040905 79041430 + 2.16667 NA Intergenic Intergenic 15465 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 198.667-38 chr5 129850079 129850250 + 2.16667 NA Intergenic L1MC4|LINE|L1 -54301 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 478.167-7 chr7 118251085 118251463 + 2.16667 NA Intergenic L2a|LINE|L2 26570 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 311-6 chr17 48152620 48152811 + 2.16667 NA intron (NM_001075099, intron 11 of 12) intron (NM_001075099, intron 11 of 12) 3796 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 508.001-3 chr8 27085026 27085597 + 2.16667 NA Intergenic Intergenic -36348 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 323.667-8 chr11 61680108 61680538 + 2.16667 NA promoter-TSS (NM_006133) promoter-TSS (NM_006133) -68 NM_006133 747 Hs.241564 NM_006133 ENSG00000134780 DAGLA C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR diacylglycerol lipase alpha protein-coding 262.5-24 chr6 41581480 41581636 + 2.16667 NA intron (NM_001012427, intron 3 of 16) intron (NM_001012427, intron 3 of 16) -17165 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 692.5-2 chr15 36883343 36884074 + 2.16667 NA intron (NR_024264, intron 1 of 6) intron (NR_024264, intron 1 of 6) 2825 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 296.5-19 chr3 100376910 100377080 + 2.16667 NA intron (NM_014820, intron 6 of 11) intron (NM_014820, intron 6 of 11) 24094 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 189-20 chr16 8327643 8327912 + 2.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 262061 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 383.834-2 chr5 138283390 138283728 + 2.16667 NA Intergenic Intergenic -8938 NM_001496 2676 Hs.58042 NM_001496 ENSG00000146013 GFRA3 GDNFR3 GDNF family receptor alpha 3 protein-coding 313.334 chr1 100834992 100835216 + 2.16667 NA Intergenic Intergenic 59738 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 218.833-10 chr17 4790475 4790651 + 2.16667 NA TTS (NM_001014985) TTS (NM_001014985) 1599 NM_001014985 388323 Hs.131035 NM_001014985 ENSG00000182327 GLTPD2 - glycolipid transfer protein domain containing 2 protein-coding 460.667-10 chr3 88092061 88092278 + 2.16667 NA intron (NM_001350135, intron 2 of 6) intron (NM_001350135, intron 2 of 6) 32914 NM_001350136 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 345.167-12 chr8 92225743 92226013 + 2.16667 NA Intergenic Intergenic -122493 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 485.166-3 chr5 128198962 128199396 + 2.16667 NA Intergenic MER54A|LTR|ERVL 115413 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 280.167-13 chr4 139505830 139506065 + 2.16667 NA TTS (NM_030648) TTS (NM_030648) 50822 NM_030648 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing 7, histone lysine methyltransferase protein-coding 225.334-4 chr2 227786138 227786375 + 2.16667 NA Intergenic Intergenic -27586 NM_001130046 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 327.834-5 chr4 95402663 95402905 + 2.16667 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 146189 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 288.334-3 chr10 110807608 110807927 + 2.16667 NA intron (NM_001134363, intron 7 of 13) intron (NM_001134363, intron 7 of 13) 63137 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 273.834 chr10 93500390 93500610 + 2.16667 NA intron (NM_018131, intron 2 of 8) intron (NM_018131, intron 2 of 8) 3888 NM_001127182 55165 Hs.14559 NM_018131 ENSG00000138180 CEP55 C10orf3|CT111|MARCH|URCC6 centrosomal protein 55 protein-coding 457.166-2 chr18 77702721 77703210 + 2.16667 NA Intergenic Intergenic 290762 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 456.5 chr14 86553271 86553533 + 2.16667 NA Intergenic Intergenic -352376 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 459.167-2 chr1 181492713 181493411 + 2.16667 NA intron (NM_001205293, intron 1 of 47) intron (NM_001205293, intron 1 of 47) 9545 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 252.167-19 chr5 90864683 90864845 + 2.16667 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 305967 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 318.834-8 chr3 174679271 174679450 + 2.16667 NA Intergenic L1MEd|LINE|L1 -179974 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 268.667-19 chr21 19765222 19765387 + 2.16667 NA Intergenic Intergenic 134451 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 236.167 chr1 6197503 6197708 + 2.16667 NA intron (NM_000983, intron 2 of 3) intron (NM_000983, intron 2 of 3) 1990 NM_000983 6146 Hs.515329 NM_000983 ENSG00000116251 RPL22 EAP|HBP15|HBP15/L22|L22 ribosomal protein L22 protein-coding 674.667 chr3 124351419 124351951 + 2.16667 NA intron (NM_001024660, intron 10 of 59) intron (NM_001024660, intron 10 of 59) -22647 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 279-21 chr20 59175515 59176037 + 2.16667 NA Intergenic L1MDa|LINE|L1 -15244 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 517.667-2 chr18 6885280 6885834 + 2.16667 NA intron (NM_001010000, intron 10 of 16) intron (NM_001010000, intron 10 of 16) 44312 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 305.834-2 chr12 14891846 14892097 + 2.16667 NA Intergenic Intergenic -6117 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 188-20 chr18 12886146 12886301 + 2.16667 NA Intergenic Charlie23a|DNA|hAT-Charlie -1888 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 405.833-7 chr5 159515795 159516087 + 2.16667 NA Intergenic Intergenic -49665 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 257.833-9 chr7 78809727 78809912 + 2.16667 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -199169 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 696.999 chrX 106481213 106481731 + 2.16667 NA Intergenic Intergenic -130458 NM_001184782 55086 Hs.274267 NM_018015 ENSG00000147231 RADX CXorf57 RPA1 related single stranded DNA binding protein, X-linked protein-coding 259.5-6 chr12 5322000 5322151 + 2.16667 NA Intergenic L1MA5|LINE|L1 -78924 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 547 chr10 68690903 68691308 + 2.16667 NA exon (NM_030625, exon 12 of 12) exon (NM_030625, exon 12 of 12) -30134 NR_104262 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 253.333-12 chr16 79169243 79169542 + 2.16667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 431345 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 321.167-20 chr9 29201573 29201841 + 2.16667 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 10592 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 339.334 chr1 196320068 196320300 + 2.16667 NA intron (NR_146057, intron 18 of 26) intron (NR_146057, intron 18 of 26) -231469 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 444.833-7 chr6 112780425 112780922 + 2.16667 NA Intergenic Intergenic 433343 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 261.333-2 chr10 104406670 104406923 + 2.16667 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 52963 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 244-31 chr6 118169700 118169849 + 2.16667 NA intron (NM_001029858, intron 2 of 7) intron (NM_001029858, intron 2 of 7) 83871 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 462.499 chr18 73558525 73558777 + 2.16667 NA Intergenic Intergenic 233710 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 408-8 chr9 127921721 127921974 + 2.16667 NA exon (NM_001135219, exon 10 of 10) exon (NM_001135219, exon 10 of 10) -4806 NM_175039 27090 Hs.3972 NM_014403 ENSG00000136840 ST6GALNAC4 IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein-coding 641.333-8 chr9 100028063 100028593 + 2.16667 NA intron (NM_015051, intron 4 of 11) intron (NM_015051, intron 4 of 11) 70672 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 476.333-3 chr8 27205130 27205441 + 2.16667 NA Intergenic Intergenic 53119 NM_001283053 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 274.667-10 chr15 83999909 84000292 + 2.16667 NA intron (NM_207517, intron 23 of 29) intron (NM_207517, intron 23 of 29) -80087 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 355.001-2 chr18 77206639 77206905 + 2.16667 NA Intergenic Intergenic -43076 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 461.501-3 chr2 62578148 62578454 + 2.16667 NA Intergenic Intergenic -72106 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 549.333 chr3 184540977 184541307 + 2.16667 NA Intergenic Intergenic 15776 NR_046593 100874079 Hs.574899 NR_046593 ENSG00000230215 LINC01840 EIF2B5-AS1 long intergenic non-protein coding RNA 1840 ncRNA 820-2 chr7 117212760 117213638 + 2.16667 NA intron (NR_161419, intron 13 of 15) intron (NR_161419, intron 13 of 15) 30518 NR_002332 93655 Hs.368131 NR_002332 ENSG00000004866 ST7-OT3 NCRNA00026|ST7|ST7OT3 ST7 overlapping transcript 3 ncRNA 276.001-3 chr3 129226416 129226609 + 2.16667 NA Intergenic MamRep4096|DNA|hAT-Tip100 -23094 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 247 chr1 83822284 83822421 + 2.16667 NA intron (NR_119374, intron 2 of 2) MER74A|LTR|ERVL 38194 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 399.167-3 chr19 45482887 45483147 + 2.16667 NA Intergenic MER113|DNA|hAT-Charlie 10236 NM_206901 6253 Hs.47517 NM_005619 ENSG00000125744 RTN2 NSP2|NSPL1|NSPLI|SPG12 reticulon 2 protein-coding 172.5-36 chr3 87077105 87077237 + 2.16667 NA Intergenic Intergenic -12109 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 564.5-3 chr9 131057683 131058078 + 2.16667 NA intron (NM_006059, intron 12 of 27) intron (NM_006059, intron 12 of 27) -38596 NM_001185096 83543 Hs.4944 NM_031426 ENSG00000126878 AIF1L C9orf58|IBA2 allograft inflammatory factor 1 like protein-coding 441.334-7 chr9 107137435 107137857 + 2.16667 NA Intergenic MIRb|SINE|MIR -34658 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 576.666 chr13 49963391 49963688 + 2.16667 NA Intergenic L1MCa|LINE|L1 -27038 NM_001127482 57213 Hs.44235 NM_020456 ENSG00000123178 SPRYD7 C13orf1|CLLD6 SPRY domain containing 7 protein-coding 553.668 chr4 43679728 43680144 + 2.16667 NA Intergenic MIR|SINE|MIR -187393 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 336.667-6 chr17 65941495 65941920 + 2.16667 NA intron (NM_001353129, intron 18 of 26) intron (NM_001353129, intron 18 of 26) -115164 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 504.834-2 chr5 51566254 51566731 + 2.16667 NA Intergenic Intergenic 183044 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 407.5-3 chr10 128011437 128011923 + 2.16667 NA intron (NM_001323354, intron 1 of 19) intron (NM_001323354, intron 1 of 19) 13533 NM_001323354 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase receptor type E protein-coding 244-6 chr15 97030650 97030893 + 2.16667 NA Intergenic L1MD1|LINE|L1 247336 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 446.833 chr15 73273344 73273782 + 2.16667 NA intron (NM_002499, intron 19 of 28) intron (NM_002499, intron 19 of 28) -26347 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 416.5-6 chr5 54464416 54464833 + 2.16667 NA Intergenic Intergenic 8925 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 438.167-2 chr15 70099368 70099913 + 2.16667 NA Intergenic CpG-8376 -1723 NM_005078 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 399.666 chr1 211515148 211515571 + 2.16667 NA Intergenic CpG -22442 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 282.167-2 chr1 111695677 111695838 + 2.16667 NA intron (NM_001370216, intron 3 of 7) intron (NM_001370216, intron 3 of 7) 30963 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 389.167 chr16 35823041 35823254 + 2.16667 NA Intergenic Intergenic 76595 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 750 chr8 22095424 22096061 + 2.16667 NA intron (NR_148728, intron 4 of 19) intron (NR_148728, intron 4 of 19) 6588 NR_148727 64760 Hs.491223 NM_022749 ENSG00000158863 FAM160B2 RAI16 family with sequence similarity 160 member B2 protein-coding 621.834 chr2 130332512 130333016 + 2.16667 NA Intergenic Intergenic 9344 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 594.834-2 chr2 18320164 18320679 + 2.16667 NA Intergenic L3|LINE|CR1 240232 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 307.334 chr1 91602605 91602877 + 2.16667 NA Intergenic MER45B|DNA|hAT-Tip100 101633 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 493.667-2 chr12 21697613 21697979 + 2.16667 NA Intergenic Intergenic -39941 NM_001315537 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 329.667 chr1 77682717 77682993 + 2.16667 NA promoter-TSS (NM_015534) promoter-TSS (NM_015534) -197 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 525.667-2 chr3 73604048 73604503 + 2.16667 NA intron (NM_015009, intron 2 of 9) intron (NM_015009, intron 2 of 9) -19293 NR_046681 101927249 Hs.733334 NR_046681 PDZRN3-AS1 - PDZRN3 antisense RNA 1 ncRNA 495.334 chr4 24419459 24419867 + 2.16667 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 53242 NR_148986 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 478.001-3 chrX 102934463 102934842 + 2.16667 NA intron (NR_146589, intron 10 of 11) intron (NR_146589, intron 10 of 11) -2620 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 590.167-4 chr19 11812118 11812552 + 2.16667 NA Intergenic Intergenic -1938 NM_152357 126070 Hs.418192 NM_152357 ENSG00000171295 ZNF440 - zinc finger protein 440 protein-coding 467.666 chr5 141702092 141702553 + 2.16667 NA Intergenic CpG -20092 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 662.499 chr6 129370527 129371041 + 2.16667 NA intron (NM_000426, intron 34 of 64) MIR3|SINE|MIR 339393 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 424.333-4 chr6 69719492 69719827 + 2.16667 NA intron (NM_001367272, intron 7 of 15) intron (NM_001367272, intron 7 of 15) 76807 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 324.501-4 chr5 30015804 30016083 + 2.16667 NA Intergenic Intergenic 135383 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 414.667-4 chr13 80641899 80642267 + 2.16667 NA Intergenic L1MD|LINE|L1 -300957 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 588.501 chr12 21989790 21990364 + 2.16667 NA Intergenic Intergenic -53383 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 396.167-3 chr1 116371931 116372221 + 2.16667 NA Intergenic Intergenic -1168 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 426.834 chr10 107716537 107716885 + 2.16667 NA Intergenic Intergenic 352582 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 318.667-8 chr5 10691694 10691937 + 2.16667 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 69419 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 204.167-11 chr2 19313140 19313405 + 2.16667 NA Intergenic MIRb|SINE|MIR -35157 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 271.167-18 chr5 97121196 97121384 + 2.16667 NA intron (NM_153234, intron 2 of 5) HAL1ME|LINE|L1 21321 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 489.667-2 chr4 31325673 31325934 + 2.16667 NA Intergenic L2b|LINE|L2 154659 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 255.5-35 chr7 124895081 124895243 + 2.16667 NA intron (NM_001042594, intron 5 of 17) MER3|DNA|hAT-Charlie 34663 NM_015450 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 1026.67 chr1 151281537 151282439 + 2.16667 NA promoter-TSS (NM_001304763) promoter-TSS (NM_001304763) -59 NR_135595 100507670 Hs.225083 NR_135595 ENSG00000232671 ZNF687-AS1 - ZNF687 antisense RNA 1 ncRNA 269.666-3 chr6 81688900 81689202 + 2.16667 NA Intergenic Intergenic 63630 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 258.334-2 chr14 69429718 69430055 + 2.16667 NA intron (NM_001330185, intron 2 of 5) L1ME1|LINE|L1 31194 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 533-6 chr8 11736220 11736975 + 2.16667 NA intron (NM_002052, intron 2 of 6) intron (NM_002052, intron 2 of 6) -24659 NM_001031839 606553 Hs.545529 NM_001031839 C8orf49 G4DM chromosome 8 open reading frame 49 protein-coding 1149.67-2 chr5 108345490 108346358 + 2.16667 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 36174 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 832.334 chr6 25070613 25071373 + 2.16667 NA Intergenic Intergenic -28705 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 396.334 chr1 57934343 57934649 + 2.16667 NA intron (NM_021080, intron 1 of 16) MIR|SINE|MIR 73915 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 581.167 chr17 65138376 65138709 + 2.16667 NA intron (NM_003835, intron 1 of 18) intron (NM_003835, intron 1 of 18) 1172 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 345.5-10 chr2 17996979 17997280 + 2.16667 NA Intergenic MER57-int|LTR|ERV1 118462 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 474.167-4 chr4 42576938 42577201 + 2.16667 NA intron (NM_001105529, intron 12 of 35) intron (NM_001105529, intron 12 of 35) 80036 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 293.833-7 chr18 3129486 3129889 + 2.16667 NA intron (NM_003803, intron 17 of 37) intron (NM_003803, intron 17 of 37) 90281 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 482.334-3 chr9 35478215 35478593 + 2.16667 NA intron (NR_003581, intron 15 of 17) intron (NR_003581, intron 15 of 17) -11707 NM_001330740 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 429.833-4 chr9 98888100 98888514 + 2.16667 NA Intergenic L2b|LINE|L2 -55600 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 355.167 chr1 190412928 190413204 + 2.16667 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 62944 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 363.667-2 chr12 65477476 65477655 + 2.16667 NA intron (NR_120431, intron 3 of 3) (TTTTAAA)n|Simple_repeat|Simple_repeat 79746 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 398-17 chr6 129252648 129252972 + 2.16667 NA intron (NM_000426, intron 14 of 64) MIRb|SINE|MIR 369669 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 294.167 chr1 17075581 17075846 + 2.16667 NA exon (NM_007365, exon 12 of 16) exon (NM_007365, exon 12 of 16) -21543 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 215.5-11 chr3 57962140 57962249 + 2.16667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -46228 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 951.501 chr4 46844129 46845150 + 2.16667 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 64606 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 497.833 chr10 88347887 88348324 + 2.16667 NA intron (NM_018363, intron 5 of 6) intron (NM_018363, intron 5 of 6) 235213 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 266.5-16 chr3 148991221 148991511 + 2.16667 NA promoter-TSS (NM_001184721) promoter-TSS (NM_001184721) -42 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 700 chr18 35230932 35232049 + 2.16667 NA Intergenic Intergenic -9544 NM_032347 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 468-6 chr5 67986806 67987081 + 2.16667 NA Intergenic MIRc|SINE|MIR 193730 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 365.334 chr10 47031364 47031697 + 2.16667 NA Intergenic L2|LINE|L2 119808 NM_001042361 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 232.5-26 chr5 14671080 14671266 + 2.16667 NA intron (NM_138348, intron 1 of 6) intron (NM_138348, intron 1 of 6) 6455 NM_138348 90268 Hs.406335 NM_138348 ENSG00000154124 OTULIN AIPDS|FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 391.334-4 chr11 98964406 98964788 + 2.16667 NA Intergenic Intergenic -56352 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 573.834 chr10 68082882 68083220 + 2.16667 NA Intergenic Intergenic -7768 NM_001278185 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 392.501-2 chr6 25602601 25602837 + 2.16667 NA intron (NM_001173977, intron 33 of 36) intron (NM_001173977, intron 33 of 36) -49496 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 300.667-14 chr5 31987050 31987268 + 2.16667 NA intron (NM_178140, intron 3 of 24) intron (NM_178140, intron 3 of 24) -51000 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 603.834-2 chr3 185660364 185661008 + 2.16667 NA intron (NR_138486, intron 9 of 15) intron (NR_138486, intron 9 of 15) -52566 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 211.5-43 chr7 30005007 30005192 + 2.16667 NA Intergenic Intergenic -14810 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 406.5-3 chr14 50231636 50231978 + 2.16667 NA promoter-TSS (NM_006939) promoter-TSS (NM_006939) -229 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 289-5 chr11 87110342 87110599 + 2.16667 NA intron (NM_001168724, intron 4 of 13) AluJr4|SINE|Alu 72536 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 307.834-5 chr13 38586021 38586189 + 2.16667 NA intron (NR_126377, intron 2 of 2) intron (NR_126377, intron 2 of 2) 18381 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 609.334-4 chr5 86880855 86881287 + 2.16667 NA Intergenic Intergenic 134253 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 403.334-4 chr20 51487805 51488137 + 2.16667 NA intron (NM_012340, intron 3 of 10) intron (NM_012340, intron 3 of 10) -34994 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 399.167-9 chr8 112144638 112144959 + 2.16667 NA Intergenic Intergenic -498695 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 366.333-2 chr4 158164328 158164593 + 2.16667 NA intron (NM_016613, intron 2 of 4) intron (NM_016613, intron 2 of 4) -6292 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 479.168 chr12 26606401 26606653 + 2.16667 NA intron (NM_002223, intron 26 of 56) intron (NM_002223, intron 26 of 56) 226667 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 437 chr11 32297763 32298200 + 2.16667 NA Intergenic Intergenic 102419 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 367.167-3 chr20 10223595 10223957 + 2.16667 NA intron (NM_001322902, intron 1 of 7) intron (NM_001322902, intron 1 of 7) -4270 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 288.834-9 chr7 80892885 80893035 + 2.16667 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 26091 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 621.334 chr5 170623549 170624167 + 2.16667 NA intron (NM_001278339, intron 1 of 7) intron (NM_001278339, intron 1 of 7) 57612 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 392.666 chr16 53669859 53670177 + 2.16667 NA intron (NM_001127897, intron 9 of 24) intron (NM_001127897, intron 9 of 24) 33841 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 194.167-16 chr16 46607689 46607944 + 2.16667 NA intron (NM_001324318, intron 5 of 12) intron (NM_001324318, intron 5 of 12) 13563 NM_024745 79801 Hs.123253 NM_024745 ENSG00000171241 SHCBP1 PAL SHC binding and spindle associated 1 protein-coding 692.333-2 chr21 34347746 34348417 + 2.16667 NA Intergenic Intergenic -15943 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 335.334-6 chr2 193937137 193937444 + 2.16667 NA Intergenic Intergenic -406979 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 635.167-3 chr18 5060017 5060495 + 2.16667 NA Intergenic Intergenic -20926 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 388-9 chr3 100086468 100086725 + 2.16667 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 27917 NM_182909 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 547.834 chr18 52671071 52671468 + 2.16667 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 331072 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 350.667-7 chr17 50207769 50208264 + 2.16667 NA Intergenic L2b|LINE|L2 -6377 NM_000088 1277 Hs.172928 NM_000088 ENSG00000108821 COL1A1 EDSARTH1|EDSC|OI1|OI2|OI3|OI4 collagen type I alpha 1 chain protein-coding 385.667-8 chr2 189665307 189665601 + 2.16667 NA intron (NM_019048, intron 3 of 5) intron (NM_019048, intron 3 of 5) 3995 NM_019048 54529 Hs.101364 NM_019048 ENSG00000138381 ASNSD1 NBLA00058|NS3TP1 asparagine synthetase domain containing 1 protein-coding 181.167-10 chr10 121283747 121283910 + 2.16667 NA Intergenic Intergenic 247486 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 391.501 chr14 46405908 46406142 + 2.16667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -65334 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 493.333-3 chr10 119356146 119356789 + 2.16667 NA intron (NM_005308, intron 2 of 15) intron (NM_005308, intron 2 of 15) -21505 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 458.001-5 chr3 152834588 152834977 + 2.16667 NA promoter-TSS (NM_002563) promoter-TSS (NM_002563) -349 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 166.833-13 chr19 38862642 38862828 + 2.16667 NA Intergenic LTR35A|LTR|ERV1 -10388 NM_001005335 3191 Hs.644906 NM_001533 ENSG00000104824 HNRNPL HNRPL|P/OKcl.14|hnRNP-L heterogeneous nuclear ribonucleoprotein L protein-coding 294.501-3 chr5 168352257 168352427 + 2.16667 NA intron (NM_001161661, intron 1 of 22) intron (NM_001161661, intron 1 of 22) 60697 NM_001161661 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 553.667 chr18 45177897 45178647 + 2.16667 NA intron (NM_001371319, intron 1 of 23) L1M6|LINE|L1 10309 NM_001371319 574.834-2 chr14 81989065 81989443 + 2.16667 NA Intergenic Intergenic -246116 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 449.667-4 chr8 26053029 26053369 + 2.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR -7786 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 419.666-4 chr5 26746828 26747121 + 2.16667 NA Intergenic L1MA7|LINE|L1 291612 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 462.666 chr12 21566025 21566344 + 2.16667 NA intron (NM_021957, intron 5 of 15) intron (NM_021957, intron 5 of 15) 38259 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 405.334-3 chr2 33379896 33380228 + 2.16667 NA intron (NM_206943, intron 31 of 33) MIRc|SINE|MIR -38454 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 725.167 chr3 40309140 40309728 + 2.16667 NA promoter-TSS (NM_005875) promoter-TSS (NM_005875) 264 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 588.001 chr21 32489692 32489987 + 2.16667 NA intron (NR_104472, intron 3 of 6) L1M3|LINE|L1 77133 NM_001286556 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 443-5 chr2 63424820 63425439 + 2.16667 NA intron (NR_148704, intron 10 of 18) L1PA16|LINE|L1 12878 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 255-30 chr5 80765372 80765556 + 2.16667 NA intron (NM_002439, intron 13 of 23) intron (NM_002439, intron 13 of 23) -110481 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 507-3 chr14 54773857 54774558 + 2.16667 NA intron (NM_015589, intron 8 of 11) MIR|SINE|MIR 19374 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 384.667-5 chr3 180875584 180875831 + 2.16667 NA Intergenic Intergenic -5529 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 415.333-4 chr18 33439572 33440208 + 2.16667 NA intron (NM_001308126, intron 2 of 23) MIR1_Amn|SINE|MIR 681 NM_001371121 520.5-2 chr15 57218541 57218874 + 2.16667 NA promoter-TSS (NM_001306219) promoter-TSS (NM_001306219) -723 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 759.834 chr1 157991799 157992537 + 2.16667 NA Intergenic Intergenic -1105 NM_001286349 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL1 KIRREL|NEPH1 kirre like nephrin family adhesion molecule 1 protein-coding 386.5-3 chr15 65731088 65731405 + 2.16667 NA intron (NM_005848, intron 9 of 31) intron (NM_005848, intron 9 of 31) -11914 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 565.167 chr12 4061269 4062171 + 2.16667 NA Intergenic Intergenic -188272 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 448.167-4 chr21 31939981 31940311 + 2.16667 NA intron (NM_014586, intron 2 of 10) intron (NM_014586, intron 2 of 10) 67126 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 219-36 chr8 117965604 117965738 + 2.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -44758 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 292.834-7 chr7 83307515 83307818 + 2.16667 NA Intergenic Intergenic -144782 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 517.166 chr2 107215611 107216004 + 2.16667 NA intron (NR_049853, intron 2 of 3) MER57B2|LTR|ERV1 133718 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 402-8 chr3 65673766 65674096 + 2.16667 NA intron (NM_001365904, intron 1 of 24) Kanga2_a|DNA|TcMar-Tc2 -219885 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 372.834-6 chr6 166058297 166058571 + 2.16667 NA Intergenic (CATTTT)n|Simple_repeat|Simple_repeat -39286 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 301 chr1 174799512 174799747 + 2.16667 NA promoter-TSS (NM_001243765) promoter-TSS (NM_001243765) -109 NM_001366456 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 488.334-4 chr20 44104950 44105398 + 2.16667 NA Intergenic MLT1H2|LTR|ERVL-MaLR 82014 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 652.5 chr2 61586543 61587102 + 2.16667 NA Intergenic Intergenic -48466 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 522.501 chr3 104425175 104425577 + 2.16667 NA Intergenic LTR40a|LTR|ERVL -901260 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 292.667-11 chr2 65187212 65187948 + 2.16667 NA Intergenic Intergenic -40115 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 235.667-7 chr11 125592591 125592794 + 2.16667 NA promoter-TSS (NM_001278504) promoter-TSS (NM_001278504) -124 NR_132372 105369550 Hs.732083 NR_132372 ENSG00000149557 STT3A-AS1 - STT3A antisense RNA 1 ncRNA 421-7 chr5 135718312 135718689 + 2.16667 NA intron (NM_001349335, intron 3 of 10) MIRb|SINE|MIR -64565 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 275.834-8 chr8 120451238 120451381 + 2.16667 NA exon (NM_022045, exon 4 of 22) exon (NM_022045, exon 4 of 22) 5890 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 192.667-3 chr1 174218533 174218623 + 2.16667 NA intron (NM_001366445, intron 1 of 13) intron (NM_001366445, intron 1 of 13) -56522 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 416.501 chr2 31523422 31523775 + 2.16667 NA 3' UTR (NM_000348, exon 5 of 5) 3' UTR (NM_000348, exon 5 of 5) 57340 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 322.5-13 chr2 68916675 68916909 + 2.16667 NA Intergenic L2c|LINE|L2 36101 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 410.667-8 chr6 20285887 20286082 + 2.16667 NA Intergenic L1MB7|LINE|L1 -73515 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 163.334 chr12 56526765 56526881 + 2.16667 NA intron (NM_002898, intron 1 of 13) intron (NM_002898, intron 1 of 13) 5003 NM_002898 5939 Hs.505729 NM_002898 ENSG00000076067 RBMS2 SCR3 RNA binding motif single stranded interacting protein 2 protein-coding 588.667-2 chr2 148673828 148674306 + 2.16667 NA intron (NM_015630, intron 1 of 13) L1M4c|LINE|L1 29316 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 180.333-20 chr16 62502609 62502778 + 2.16667 NA Intergenic L1MA5|LINE|L1 -466255 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 474.334-2 chr1 80655733 80656463 + 2.16667 NA Intergenic Intergenic 14811 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 727.666 chr20 57332262 57332739 + 2.16667 NA intron (NM_012444, intron 2 of 12) intron (NM_012444, intron 2 of 12) 2697 NM_012444 23626 Hs.159737 NM_012444 ENSG00000054796 SPO11 CT35|SPATA43|TOPVIA SPO11 initiator of meiotic double stranded breaks protein-coding 659.999 chr6 41005775 41006538 + 2.16667 NA intron (NR_110873, intron 1 of 5) L1MC5a|LINE|L1 17124 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 343-4 chr10 115124513 115124847 + 2.16667 NA intron (NM_001276282, intron 3 of 7) MER21C|LTR|ERVL 31315 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 678.167 chr17 48892393 48893018 + 2.16667 NA promoter-TSS (NM_005175) promoter-TSS (NM_005175) -82 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5MC1 ATP5A|ATP5G|ATP5G1 ATP synthase membrane subunit c locus 1 protein-coding 234.167-19 chr4 156075457 156075599 + 2.16667 NA Intergenic L1MB7|LINE|L1 -121662 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 438.5-8 chr7 90152778 90153077 + 2.16667 NA intron (NR_110029, intron 2 of 2) SVA_D|Retroposon|SVA -1542 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 531-3 chr3 58167270 58167753 + 2.16667 NA intron (NR_135534, intron 1 of 1) intron (NR_135534, intron 1 of 1) 3124 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 476.334-4 chr12 48454480 48454922 + 2.16667 NA Intergenic Intergenic -17964 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 428-9 chr7 46092655 46093106 + 2.16667 NA Intergenic L1PA15|LINE|L1 -171608 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 557.499 chr10 108784165 108784558 + 2.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 -715068 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 261.666-5 chr12 13013930 13014106 + 2.16667 NA intron (NR_149067, intron 2 of 2) L1ME4b|LINE|L1 13576 NR_002774 93164 Hs.593282 NR_002774 ENSG00000183935 HTR7P1 HTR7P 5-hydroxytryptamine receptor 7 pseudogene 1 pseudo 312.166 chr16 88332150 88332386 + 2.16667 NA Intergenic Intergenic -95203 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 583.167 chr14 58643372 58643813 + 2.16667 NA intron (NM_001079520, intron 3 of 3) intron (NM_001079520, intron 3 of 3) 4755 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 349.833-8 chr3 4354647 4355020 + 2.16667 NA Intergenic Intergenic 51529 NM_006515 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 508.666-6 chr18 33404086 33404577 + 2.16667 NA intron (NM_001308126, intron 3 of 23) L1MC2|LINE|L1 36240 NM_001371121 463.167-4 chr20 16810195 16810611 + 2.16667 NA Intergenic Intergenic 62050 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 323.667-9 chr11 132099821 132100101 + 2.16667 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) -184341 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 596.834 chr21 33976633 33977332 + 2.16667 NA non-coding (NR_134561, exon 2 of 2) non-coding (NR_134561, exon 2 of 2) 600 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 175.167-39 chr5 143788864 143789025 + 2.16667 NA Intergenic Intergenic -23217 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 437.334-6 chr2 215119929 215120682 + 2.16667 NA intron (NR_103740, intron 1 of 54) L1PA16|LINE|L1 18321 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 489.333-5 chr22 27931216 27931623 + 2.16667 NA intron (NR_026963, intron 1 of 4) L1MB3|LINE|L1 -10807 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 482.5 chr11 46367760 46368012 + 2.16667 NA intron (NM_001105540, intron 4 of 31) intron (NM_001105540, intron 4 of 31) 6280 NM_001105540 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding 328.667-7 chr15 85088681 85089002 + 2.16667 NA intron (NM_001243137, intron 6 of 21) L1ME4a|LINE|L1 106867 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 443.167-2 chr18 7779502 7779811 + 2.16667 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 212340 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 460.667-7 chr2 52911494 52911851 + 2.16667 NA Intergenic Intergenic -209057 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 1050.17 chr14 64986527 64987821 + 2.16667 NA intron (NM_002028, intron 1 of 11) CpG 279 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 464.501 chr2 119366773 119367169 + 2.16667 NA promoter-TSS (NM_001178043) promoter-TSS (NM_001178043) 47 NM_020548 1622 Hs.78888 NM_020548 ENSG00000155368 DBI ACBD1|ACBP|CCK-RP|EP diazepam binding inhibitor, acyl-CoA binding protein protein-coding 494.167-4 chr15 27237988 27238427 + 2.16667 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -76888 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 436.667 chr1 239515746 239516271 + 2.16667 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) -113065 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 389.167-3 chr4 74623170 74623466 + 2.16667 NA Intergenic L2a|LINE|L2 171205 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 397.501 chr20 46324924 46325237 + 2.16667 NA Intergenic Intergenic -16582 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 717.501-2 chrUn_KI270438v1 104248 105125 + 2.16667 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 340.667-6 chr14 81374522 81374779 + 2.16667 NA intron (NM_001366850, intron 4 of 7) L1ME3B|LINE|L1 53125 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 336.501 chr2 109575670 109575942 + 2.16667 NA intron (NM_001321508, intron 1 of 5) intron (NM_001321508, intron 1 of 5) 37861 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 254.167-7 chr11 113506084 113506252 + 2.16667 NA Intergenic Intergenic -30770 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 182-50 chr8 138725649 138725929 + 2.16667 NA intron (NM_152888, intron 23 of 64) (AC)n|Simple_repeat|Simple_repeat 188252 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 280.333-30 chrX 95724684 95724947 + 2.16667 NA Intergenic Intergenic 613087 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 247.5-3 chr11 77630823 77631005 + 2.16667 NA intron (NM_001293, intron 1 of 6) L1MB8|LINE|L1 6880 NM_001311202 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 450-9 chr9 27496479 27497097 + 2.16667 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -27526 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 212.334-3 chr10 109451009 109451141 + 2.16667 NA Intergenic Intergenic 472171 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 427-5 chr17 67143959 67144212 + 2.16667 NA intron (NM_001330447, intron 21 of 32) intron (NM_001330447, intron 21 of 32) 99531 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 456.499-2 chr4 123061825 123062206 + 2.16667 NA intron (NM_001345856, intron 13 of 15) intron (NM_001345856, intron 13 of 15) 138937 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 629.001 chr2 127107399 127107836 + 2.16667 NA promoter-TSS (NM_139351) promoter-TSS (NM_139351) -463 NM_139343 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 268.833-19 chr5 177194283 177194553 + 2.16667 NA intron (NM_172349, intron 4 of 23) AluJb|SINE|Alu 60189 NM_001365684 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 313.834-6 chr3 172725122 172725453 + 2.16667 NA Intergenic A-rich|Low_complexity|Low_complexity -14220 NM_001146276 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 453.834-3 chr6 75204285 75204850 + 2.16667 NA intron (NM_080645, intron 1 of 50) intron (NM_080645, intron 1 of 50) 1486 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 520.168 chr2 191571051 191571374 + 2.16667 NA Intergenic Intergenic -106860 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 398.334 chr10 53786213 53786452 + 2.16667 NA Intergenic LTR41|LTR|ERVL -699898 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 416.001-2 chr8 67120363 67120562 + 2.16667 NA intron (NM_001363133, intron 13 of 27) L1MB3|LINE|L1 36614 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 1362.5 chr15 39579979 39581118 + 2.16667 NA promoter-TSS (NM_003246) promoter-TSS (NM_003246) -531 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 223.834-10 chr3 58505228 58505389 + 2.16667 NA intron (NM_003500, intron 14 of 14) intron (NM_003500, intron 14 of 14) 6943 NM_153331 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 360.167-11 chr8 87019807 87019993 + 2.16667 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 153485 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 385.667-12 chr7 144738498 144738962 + 2.16667 NA intron (NR_146936, intron 1 of 11) intron (NR_146936, intron 1 of 11) 168 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 680.334-2 chr17 60641930 60642355 + 2.16667 NA intron (NM_003620, intron 3 of 5) MIRc|SINE|MIR -35709 NM_001353145 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 253.166-5 chr18 53909856 53910096 + 2.16667 NA Intergenic Intergenic 312436 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 565.166 chr20 45592405 45593081 + 2.16667 NA Intergenic MER20|DNA|hAT-Charlie -13459 NM_181510 90199 Hs.116128 NM_130896 ENSG00000158901 WFDC8 C20orf170|HEL-S-292|WAP8|dJ461P17.1 WAP four-disulfide core domain 8 protein-coding 305.833-6 chr15 56186687 56186919 + 2.16667 NA intron (NM_001370561, intron 4 of 11) intron (NM_001370561, intron 4 of 11) 3129 NM_001368074 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 309.334-4 chr18 12671331 12671513 + 2.16667 NA intron (NR_073537, intron 12 of 12) intron (NR_073537, intron 12 of 12) 12683 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 621.501 chr7 137656192 137657006 + 2.16667 NA intron (NM_001321710, intron 3 of 32) intron (NM_001321710, intron 3 of 32) 189733 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 1039 chr8 144901455 144902835 + 2.16667 NA promoter-TSS (NM_001363101) promoter-TSS (NM_001363101) 32 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 504.167-4 chr8 111340560 111341018 + 2.16667 NA Intergenic L1MEc|LINE|L1 -35850 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 898.667-2 chr5 129663963 129665003 + 2.16667 NA intron (NM_133638, intron 15 of 22) intron (NM_133638, intron 15 of 22) -83611 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 476.333-2 chr6 15464309 15464769 + 2.16667 NA intron (NM_004973, intron 4 of 17) intron (NM_004973, intron 4 of 17) 198489 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 770.168 chr4 12724499 12725138 + 2.16667 NA Intergenic Intergenic 501367 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 455.5-2 chr12 34034063 34034334 + 2.16667 NA Intergenic Intergenic 11702 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 293.167-12 chr4 81998412 81998658 + 2.16667 NA Intergenic Intergenic 375456 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 528.333 chr1 72623043 72623436 + 2.16667 NA Intergenic L1MC|LINE|L1 -340700 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 292-15 chr2 68040632 68040894 + 2.16667 NA TTS (NM_006333) TTS (NM_006333) 22241 NM_173177 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 383-3 chr16 26884195 26884465 + 2.16667 NA Intergenic AluJr|SINE|Alu -182597 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 329.499 chr4 161642687 161642946 + 2.16667 NA intron (NM_001128428, intron 7 of 14) L1MB3|LINE|L1 -379917 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 429.334-3 chr19 48169943 48170553 + 2.16667 NA promoter-TSS (NR_135499) promoter-TSS (NR_135499) 96 NR_135501 3978 Hs.1770 NM_000234 ENSG00000105486 LIG1 - DNA ligase 1 protein-coding 296.334-12 chr9 104411464 104411640 + 2.16667 NA Intergenic MER4-int|LTR|ERV1 -92711 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 761.667 chrX 134763808 134764506 + 2.16667 NA intron (NM_001316887, intron 1 of 3) MER113|DNA|hAT-Charlie 165 NM_001316887 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2B|OOSP2L placenta enriched 1 protein-coding 345.167-3 chr12 4366117 4366494 + 2.16667 NA Intergenic L1MEf|LINE|L1 13407 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 313-8 chr4 101349725 101349876 + 2.16667 NA TTS (NR_033874) TTS (NR_033874) 2023 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 370.334-3 chr13 89901714 89901954 + 2.16667 NA Intergenic Intergenic 217883 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 644.5-2 chr12 72346144 72346591 + 2.16667 NA intron (NM_013381, intron 2 of 18) MER91A|DNA|hAT-Tip100 -72858 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 282-3 chr10 32030990 32031169 + 2.16667 NA exon (NM_004521, exon 14 of 26) exon (NM_004521, exon 14 of 26) 25346 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 317.167-2 chr1 174077471 174077646 + 2.16667 NA Intergenic HAL1|LINE|L1 81729 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 577.833-5 chrX 21985025 21985723 + 2.16667 NA intron (NM_004595, intron 9 of 10) intron (NM_004595, intron 9 of 10) 44665 NM_004595 6611 Hs.724874 NM_004595 ENSG00000102172 SMS MRSR|SPMSY|SRS|SpS spermine synthase protein-coding 588.167-2 chr10 54985826 54986362 + 2.16667 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -184803 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 259.667-19 chr6 148736807 148737022 + 2.16667 NA Intergenic L2a|LINE|L2 -10116 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 408.167-5 chr3 83603332 83603601 + 2.16667 NA Intergenic L1MA7|LINE|L1 1266109 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 698.5 chr4 4252679 4253133 + 2.16667 NA Intergenic L1M5|LINE|L1 -4664 NM_032927 85013 Hs.12845 NM_032927 ENSG00000132406 TMEM128 - transmembrane protein 128 protein-coding 989.834-2 chr18 76398568 76399516 + 2.16667 NA intron (NM_014643, intron 3 of 6) intron (NM_014643, intron 3 of 6) -92610 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 333.166-5 chr2 186883226 186883574 + 2.16667 NA Intergenic Intergenic -34230 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 625.001 chr10 101065926 101066655 + 2.16667 NA promoter-TSS (NR_135068) promoter-TSS (NR_135068) -9 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 252-22 chr15 48522517 48522706 + 2.16667 NA intron (NM_000138, intron 9 of 65) intron (NM_000138, intron 9 of 65) 123177 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 329-3 chr16 12354164 12354332 + 2.16667 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) -366073 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 435.167 chr10 58734248 58734602 + 2.16667 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 19410 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 233-10 chr2 24047382 24047585 + 2.16667 NA promoter-TSS (NM_001142319) promoter-TSS (NM_001142319) -57 NM_001142319 80304 Hs.24624 NM_025203 ENSG00000163026 WDCP C2orf44|MMAP|PP384 WD repeat and coiled coil containing protein-coding 754.167 chr10 110306277 110307069 + 2.16667 NA Intergenic Intergenic -1753 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 326.167-7 chr18 55266754 55266928 + 2.16667 NA intron (NM_001348216, intron 4 of 12) intron (NM_001348216, intron 4 of 12) 35819 NM_001243236 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 470.833-4 chr15 95681515 95681784 + 2.16667 NA Intergenic Intergenic 248556 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 345.001 chr6 69679933 69680130 + 2.16667 NA intron (NM_001367272, intron 14 of 15) intron (NM_001367272, intron 14 of 15) 116435 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 859.834 chr17 27380372 27381420 + 2.16667 NA Intergenic L2b|LINE|L2 -37109 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 497.5 chr9 126781499 126782174 + 2.16667 NA Intergenic Intergenic -23170 NM_001135776 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 258.833-9 chr2 100774900 100775104 + 2.16667 NA Intergenic Intergenic -45137 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 382.5-7 chr2 134490768 134491180 + 2.16667 NA intron (NM_030923, intron 5 of 7) intron (NM_030923, intron 5 of 7) 228026 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 423.667-7 chr8 123070336 123070601 + 2.16667 NA Intergenic Intergenic -2239 NM_001363151 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 319.333-10 chr3 159238407 159238641 + 2.16667 NA intron (NM_001197113, intron 1 of 10) L2c|LINE|L2 -34723 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 462.833-5 chr4 55259303 55259639 + 2.16667 NA Intergenic Intergenic -86771 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 562.333 chr2 169109497 169110344 + 2.16667 NA Intergenic Intergenic 28813 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 377.5-5 chr2 134518677 134518947 + 2.16667 NA intron (NM_030923, intron 4 of 7) LTR16E1|LTR|ERVL 200188 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 323.167-10 chrX 52574564 52574875 + 2.16667 NA Intergenic HERV1_I-int|LTR|ERV1 -48216 NR_027250 280659 Hs.694472 NM_174961 SSX8P SSX8 SSX family member 8, pseudogene pseudo 279.001 chr2 125984519 125984711 + 2.16667 NA Intergenic Intergenic 133370 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 485.167-3 chr16 50210491 50210934 + 2.16667 NA intron (NM_001365324, intron 1 of 11) intron (NM_001365324, intron 1 of 11) -55839 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 382.001 chr10 106606384 106606578 + 2.16667 NA intron (NM_001206569, intron 23 of 25) intron (NM_001206569, intron 23 of 25) 466316 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 336.834-6 chr6 84680760 84681016 + 2.16667 NA Intergenic L1M4|LINE|L1 -8570 NR_125875 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 621.001-2 chr19 43441448 43441965 + 2.16667 NA Intergenic AluSx1|SINE|Alu 23902 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 343.501-2 chr10 118176862 118177137 + 2.16667 NA intron (NR_026940, intron 3 of 3) L1ME1|LINE|L1 -130058 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 408.001-3 chr2 179412552 179412824 + 2.16667 NA Intergenic MER45B|DNA|hAT-Tip100 -147856 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 334.334-8 chr20 63214157 63214382 + 2.16667 NA intron (NM_017798, intron 2 of 4) intron (NM_017798, intron 2 of 4) 1862 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 347.334-10 chr9 85570028 85570433 + 2.16667 NA intron (NM_015239, intron 25 of 25) MER44B|DNA|TcMar-Tigger 171799 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 552.001 chr8 102808602 102809011 + 2.16667 NA intron (NR_149020, intron 1 of 1) intron (NR_149020, intron 1 of 1) 1984 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 438.5-2 chr1 192126929 192127289 + 2.16667 NA Intergenic Intergenic -31353 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 371.833-7 chr3 165644114 165644400 + 2.16667 NA Intergenic L1ME3Cz|LINE|L1 193166 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 298.667-20 chr7 70112242 70112505 + 2.16667 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 513898 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 246.834-3 chr4 56475765 56476007 + 2.16667 NA intron (NR_151856, intron 5 of 19) L1ME4a|LINE|L1 8269 NM_006947 6731 Hs.237825 NM_006947 ENSG00000174780 SRP72 BMFF|BMFS1|HEL103 signal recognition particle 72 protein-coding 620.834-2 chr4 156460341 156460657 + 2.16667 NA Intergenic Intergenic -506633 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 380.333 chr1 69686173 69686654 + 2.16667 NA intron (NM_001370785, intron 2 of 26) L1MDa|LINE|L1 117072 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 219.166-4 chr5 97434458 97434627 + 2.16667 NA Intergenic Intergenic -70154 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 549.667-2 chr13 63728224 63728553 + 2.16667 NA intron (NR_047011, intron 2 of 3) MIR|SINE|MIR -9047 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 361-14 chr6 138004669 138004885 + 2.16667 NA Intergenic Intergenic -58977 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 571.667-4 chr7 92178663 92179321 + 2.16667 NA non-coding (NR_122109, exon 5 of 5) non-coding (NR_122109, exon 5 of 5) -13716 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 385.501 chr1 151170841 151171033 + 2.16667 NA TTS (NR_144937) TTS (NR_144937) 4793 NR_037937 79005 Hs.732060 NM_024041 ENSG00000163156 SCNM1 - sodium channel modifier 1 protein-coding 473.167-2 chr1 197357091 197357714 + 2.16667 NA intron (NM_001193640, intron 3 of 9) intron (NM_001193640, intron 3 of 9) 89150 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 399.166 chr10 122648710 122648964 + 2.16667 NA Intergenic Intergenic -24045 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 267.333-25 chr7 91858830 91859106 + 2.16667 NA Intergenic L1ME4b|LINE|L1 21734 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 480-3 chr2 211158722 211159196 + 2.16667 NA Intergenic Intergenic 541388 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 289-11 chr16 9640128 9640375 + 2.16667 NA Intergenic L1MDa|LINE|L1 -184746 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 600.167 chr1 206887428 206888024 + 2.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR -9717 NM_006850 11009 Hs.58831 NM_006850 ENSG00000162892 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 439.334-2 chr4 171422026 171422686 + 2.16667 NA Intergenic Intergenic 216407 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 240.667-7 chr11 82857439 82857605 + 2.16667 NA intron (NM_001319214, intron 1 of 7) MER117|DNA|hAT-Charlie 42908 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 382.334-2 chr16 47816687 47817195 + 2.16667 NA Intergenic Intergenic -41640 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 230.333-11 chr15 82158349 82158503 + 2.16667 NA intron (NM_001040610, intron 14 of 17) intron (NM_001040610, intron 14 of 17) 69832 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 390.333-5 chr3 148902354 148902565 + 2.16667 NA Intergenic Intergenic 37163 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 226.5-44 chrX 140051053 140051223 + 2.16667 NA Intergenic Intergenic 33870 NR_148935 728660 Hs.460956 NR_148935 ENSG00000233145 LOC728660 - uncharacterized LOC728660 ncRNA 639 chr2 108593681 108594327 + 2.16667 NA intron (NM_001193488, intron 1 of 9) intron (NM_001193488, intron 1 of 9) 5698 NM_004987 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 519.167 chr1 151790424 151790835 + 2.16667 NA promoter-TSS (NM_001083964) promoter-TSS (NM_001083964) -95 NM_001083964 11022 Hs.144439 NM_006862 ENSG00000182134 TDRKH TDRD2 tudor and KH domain containing protein-coding 508.333-2 chr12 111397059 111397578 + 2.16667 NA Intergenic Intergenic -8630 NM_005475 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 530.334-2 chr2 98568380 98568784 + 2.16667 NA exon (NM_004027, exon 23 of 26) exon (NM_004027, exon 23 of 26) 39930 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 319.167 chr1 27803145 27803443 + 2.16667 NA intron (NM_177424, intron 4 of 8) L1MEg|LINE|L1 -27488 NM_014110 5511 Hs.533474 NM_002713 ENSG00000117751 PPP1R8 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 protein phosphatase 1 regulatory subunit 8 protein-coding 332.167 chr1 20287821 20288018 + 2.16667 NA Intergenic L1PA8|LINE|L1 -2956 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 399.334 chr15 63402993 63403332 + 2.16667 NA intron (NR_120375, intron 4 of 6) intron (NR_120375, intron 4 of 6) 12932 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 194.833-31 chrX 80291704 80291868 + 2.16667 NA intron (NR_110646, intron 2 of 5) intron (NR_110646, intron 2 of 5) 43532 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 426-4 chr12 75390968 75391546 + 2.16667 NA promoter-TSS (NM_001355025) promoter-TSS (NM_001355025) 168 NR_072995 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 899.667 chr4 99563445 99564610 + 2.16667 NA promoter-TSS (NM_000253) promoter-TSS (NM_000253) 12 NM_001134666 93587 Hs.380412 NM_152292 ENSG00000145331 TRMT10A HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10 tRNA methyltransferase 10A protein-coding 398.167-2 chr2 163246542 163246777 + 2.16667 NA Intergenic Intergenic -407892 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 309.333-10 chr2 84297087 84297355 + 2.16667 NA Intergenic AluJr|SINE|Alu 6539 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 274.667-29 chr9 29568555 29568715 + 2.16667 NA Intergenic Intergenic -355034 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 872.334-2 chr9 78369258 78370404 + 2.16667 NA Intergenic Intergenic 72706 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 370.501 chr7 30796416 30796694 + 2.16667 NA intron (NR_037598, intron 7 of 19) intron (NR_037598, intron 7 of 19) 25138 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 331.667-13 chr8 110056510 110056707 + 2.16667 NA Intergenic Intergenic -80837 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 352.333-2 chr11 33157579 33157880 + 2.16667 NA intron (NM_001326, intron 1 of 20) intron (NM_001326, intron 1 of 20) 3751 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 342.833-10 chr2 24676650 24676944 + 2.16667 NA intron (NM_001362950, intron 7 of 23) L1PA14|LINE|L1 92320 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 576.833 chr6 134940791 134941196 + 2.16667 NA intron (NM_170771, intron 3 of 5) intron (NM_170771, intron 3 of 5) 9108 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 291.667-14 chr8 69810887 69811081 + 2.16667 NA intron (NM_001146009, intron 1 of 7) intron (NM_001146009, intron 1 of 7) 22185 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 532.334-2 chr11 101620382 101620816 + 2.16667 NA Intergenic L2c|LINE|L2 -36592 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 365.5-11 chr20 61166349 61166633 + 2.16667 NA Intergenic Intergenic -85770 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 395.501 chr1 226547552 226547895 + 2.16667 NA Intergenic Intergenic -1041 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 310.167-11 chr8 144493274 144493679 + 2.16667 NA intron (NM_001329444, intron 2 of 11) intron (NM_001329444, intron 2 of 11) -10664 NM_005309 2875 Hs.103502 NM_005309 ENSG00000167701 GPT AAT1|ALT1|GPT1 glutamic--pyruvic transaminase protein-coding 324.166-2 chr18 61469620 61469819 + 2.16667 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 136289 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 379.667-6 chr6 53650341 53650661 + 2.16667 NA 3' UTR (NM_001003760, exon 3 of 3) 3' UTR (NM_001003760, exon 3 of 3) 15255 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 239.667-33 chr4 144581483 144581649 + 2.16667 NA Intergenic Intergenic 64453 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 193.167-4 chr11 74720860 74720988 + 2.16667 NA promoter-TSS (NR_039845) promoter-TSS (NR_039845) -587 NR_039845 100616402 NR_039845 ENSG00000265902 MIR4696 - microRNA 4696 ncRNA 353.833-10 chrX 148092943 148093456 + 2.16667 NA Intergenic L1P4a|LINE|L1 111862 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 569.334-3 chr4 38035250 38035934 + 2.16667 NA exon (NM_015173, exon 8 of 20) exon (NM_015173, exon 8 of 20) -74589 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 520.001-2 chr6 100665784 100666174 + 2.16667 NA intron (NM_006828, intron 14 of 41) L1ME1|LINE|L1 -202304 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 761.334 chr6 73652343 73653404 + 2.16667 NA intron (NM_012434, intron 1 of 10) intron (NM_012434, intron 1 of 10) 1119 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 320.334-12 chr7 89105276 89105501 + 2.16667 NA intron (NM_181646, intron 1 of 3) MER21-int|LTR|ERVL -309651 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 400.333-6 chr3 124761191 124761660 + 2.16667 NA TTS (NM_001354765) TTS (NM_001354765) 28986 NR_036088 100422864 NR_036088 ENSG00000265981 MIR544B - microRNA 544b ncRNA 335.834-12 chr6 28357050 28357271 + 2.16667 NA promoter-TSS (NM_001135215) promoter-TSS (NM_001135215) -889 NM_001135215 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 236-19 chr6 69080350 69080521 + 2.16667 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 445153 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 348.667-9 chr5 24478960 24479271 + 2.16667 NA Intergenic LTR49-int|LTR|ERV1 165863 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 321.5-25 chr9 91380458 91380622 + 2.16667 NA Intergenic L1MC4|LINE|L1 -18571 NM_001351432 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 275-2 chr1 187133361 187133537 + 2.16667 NA intron (NR_126347, intron 1 of 3) L1MA6|LINE|L1 40607 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 596.501 chr17 50695245 50695773 + 2.16667 NA 3' UTR (NM_052855, exon 5 of 5) 3' UTR (NM_052855, exon 5 of 5) 12405 NM_052855 91369 Hs.463426 NM_052855 ENSG00000154945 ANKRD40 - ankyrin repeat domain 40 protein-coding 469.167 chr11 10406078 10406727 + 2.16667 NA intron (NR_103765, intron 2 of 3) Charlie17b|DNA|hAT-Charlie -43919 NM_001172431 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 361-10 chr5 101499325 101499572 + 2.16667 NA Intergenic Intergenic -596166 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 507.5 chr2 185208209 185208531 + 2.16667 NA Intergenic LTR16A|LTR|ERVL -41298 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 244.667-4 chr1 190557189 190557479 + 2.16667 NA Intergenic Intergenic -67556 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 603.666-3 chr18 59249115 59249643 + 2.16667 NA Intergenic Intergenic 24075 NM_013435 30062 Hs.278957 NM_013435 ENSG00000134438 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 181.5 chr1 6727403 6727667 + 2.16667 NA promoter-TSS (NR_104621) promoter-TSS (NR_104621) 8 NR_104621 100505887 Hs.250839 NR_104620 LINC01672 NMR long intergenic non-protein coding RNA 1672 ncRNA 664.5-2 chr4 110518884 110519497 + 2.16667 NA intron (NM_001977, intron 8 of 19) intron (NM_001977, intron 8 of 19) 43035 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 486.5-7 chr19 38899661 38900189 + 2.16667 NA promoter-TSS (NM_002503) promoter-TSS (NM_002503) -44 NR_040515 4793 Hs.9731 NM_002503 ENSG00000104825 NFKBIB IKBB|TRIP9 NFKB inhibitor beta protein-coding 305.834-4 chr18 72291965 72292266 + 2.16667 NA Intergenic Intergenic 252227 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 227.5-23 chr3 100957909 100958087 + 2.16667 NA intron (NM_001349332, intron 1 of 35) L2|LINE|L2 35492 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 363.166-2 chr14 66610194 66610510 + 2.16667 NA intron (NM_001024218, intron 1 of 21) L1PA16|LINE|L1 102945 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 627-5 chr7 154503841 154504650 + 2.16667 NA intron (NR_157196, intron 3 of 25) intron (NR_157196, intron 3 of 25) 199086 NR_157196 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 246-19 chr2 210827148 210827390 + 2.16667 NA Intergenic L1PB3|LINE|L1 209698 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 398.501 chr15 70879871 70880179 + 2.16667 NA intron (NM_001284357, intron 2 of 16) L2a|LINE|L2 12408 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 497.334-4 chr7 118424616 118424956 + 2.16667 NA Intergenic Intergenic 200082 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 272.834-5 chr19 46766843 46767238 + 2.16667 NA Intergenic L2a|LINE|L2 17774 NM_001145145 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 679.501-2 chr7 95199745 95200417 + 2.16667 NA intron (NM_017650, intron 6 of 15) MIR3|SINE|MIR 124451 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 350.834-3 chr2 125219513 125219682 + 2.16667 NA Intergenic L1MA5A|LINE|L1 898388 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 249.167-29 chr8 118702808 118702978 + 2.16667 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -80930 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 798.666 chr10 46028418 46029171 + 2.16667 NA intron (NM_001145261, intron 1 of 10) intron (NM_001145261, intron 1 of 10) 1920 NM_001145261 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 731.001 chr6 80213898 80214684 + 2.16667 NA intron (NR_134945, intron 9 of 10) intron (NR_134945, intron 9 of 10) 107620 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 242.167-3 chr11 55731365 55731545 + 2.16667 NA Intergenic Intergenic -41983 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 489.334 chr12 131104597 131104864 + 2.16667 NA intron (NM_198827, intron 15 of 24) intron (NM_198827, intron 15 of 24) -60281 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 795.834-2 chr9 37747051 37747680 + 2.16667 NA TTS (NM_014907) TTS (NM_014907) -6438 NR_104612 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 450.5-3 chr4 30441488 30441807 + 2.16667 NA Intergenic Intergenic -278722 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 229-8 chr19 48364176 48364377 + 2.16667 NA promoter-TSS (NM_012451) promoter-TSS (NM_012451) -91 NM_012451 23546 Hs.408333 NM_012451 ENSG00000105467 SYNGR4 - synaptogyrin 4 protein-coding 252.167-12 chr2 228907081 228907291 + 2.16667 NA Intergenic L1MA8|LINE|L1 -295791 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 535.167-4 chr20 4607000 4607601 + 2.16667 NA Intergenic Intergenic -79156 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 487.667-4 chr5 171936529 171936829 + 2.16667 NA intron (NM_033644, intron 1 of 12) intron (NM_033644, intron 1 of 12) 70194 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 206.834 chr1 43358766 43358928 + 2.16667 NA promoter-TSS (NM_001255) promoter-TSS (NM_001255) -134 NM_001255 991 Hs.524947 NM_001255 ENSG00000117399 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding 367.833-4 chr14 72082344 72082680 + 2.16667 NA intron (NM_001370288, intron 2 of 16) L1M2|LINE|L1 148985 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 782.833 chr14 62162760 62163661 + 2.16667 NA Intergenic Intergenic -23237 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 460.5-4 chr20 33731736 33732130 + 2.16667 NA promoter-TSS (NM_001282933) promoter-TSS (NM_001282933) -63 NM_001282933 84905 Hs.516989 NM_032819 ENSG00000131061 ZNF341 HIES3 zinc finger protein 341 protein-coding 535.501-2 chr12 109427938 109428413 + 2.16667 NA intron (NM_001101421, intron 18 of 30) intron (NM_001101421, intron 18 of 30) 39456 NM_001101421 283446 Hs.512008 NM_173597 ENSG00000174527 MYO1H - myosin IH protein-coding 307.834-7 chr15 97162398 97162650 + 2.16667 NA Intergenic Intergenic 359287 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 225.5-28 chr8 78332454 78332609 + 2.16667 NA Intergenic Charlie5|DNA|hAT-Charlie -183809 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 601.666-2 chr20 1965604 1966112 + 2.16667 NA non-coding (NR_134520, exon 3 of 4) non-coding (NR_134520, exon 3 of 4) 18648 NR_134520 727993 Hs.551466 NR_134520 ENSG00000233896 PDYN-AS1 - PDYN antisense RNA 1 ncRNA 190.5-51 chr8 30484643 30484744 + 2.16667 NA intron (NM_001008710, intron 4 of 8) intron (NM_001008710, intron 4 of 8) -99292 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 278.834 chr1 209015723 209016063 + 2.16667 NA Intergenic Intergenic 43439 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 322.834-4 chr6 6477303 6477514 + 2.16667 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -111312 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 499-4 chr8 85290352 85290733 + 2.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie 45084 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 211.333-11 chr12 41211696 41211962 + 2.16667 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 23509 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 339.667-19 chr9 98193380 98193731 + 2.16667 NA promoter-TSS (NM_052820) promoter-TSS (NM_052820) -918 NM_052820 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 362.833-4 chr16 56867029 56867659 + 2.16667 NA intron (NM_001126108, intron 2 of 25) MIR1_Amn|SINE|MIR 2137 NM_001126108 6559 Hs.669115 NM_000339 ENSG00000070915 SLC12A3 NCC|NCCT|TSC solute carrier family 12 member 3 protein-coding 181.167-19 chr19 18192059 18192142 + 2.16667 NA Intergenic MER51B|LTR|ERV1 -1118 NM_032683 84769 Hs.515254 NM_032683 ENSG00000254858 MPV17L2 FKSG24 MPV17 mitochondrial inner membrane protein like 2 protein-coding 611.167-3 chr19 50929645 50930611 + 2.16667 NA Intergenic MER5A1|DNA|hAT-Charlie -19390 NR_126566 9622 Hs.218366 NM_004917 ENSG00000167749 KLK4 AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein kallikrein related peptidase 4 protein-coding 254-8 chr11 112089822 112090023 + 2.16667 NA intron (NM_003002, intron 3 of 3) L1ME3B|LINE|L1 3049 NR_077060 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 351.5-2 chr1 160579609 160579873 + 2.16667 NA promoter-TSS (NM_001184879) promoter-TSS (NM_001184879) -225 NM_001184882 8832 Hs.398093 NM_003874 ENSG00000066294 CD84 LY9B|SLAMF5|hCD84|mCD84 CD84 molecule protein-coding 359.501-3 chr2 32424121 32424359 + 2.16667 NA intron (NM_016252, intron 10 of 73) MER44C|DNA|TcMar-Tigger 67212 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 651.168 chr8 74515549 74515892 + 2.16667 NA Intergenic L1M1|LINE|L1 -32823 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 528.333-4 chr3 102646495 102647257 + 2.16667 NA Intergenic Intergenic 211861 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 335.666-3 chr7 22118490 22118785 + 2.16667 NA 3' UTR (NM_001367600, exon 16 of 16) 3' UTR (NM_001367600, exon 16 of 16) 75108 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 339.834 chr10 119844518 119844742 + 2.16667 NA intron (NM_024834, intron 8 of 15) MLT2A2|LTR|ERVL 25373 NM_001243194 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 204.167-16 chr3 104621557 104621716 + 2.16667 NA Intergenic Arthur1C|DNA|hAT-Tip100 -745077 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 303.334-9 chr2 114764891 114765078 + 2.16667 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 68564 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 416-10 chr7 45722600 45722951 + 2.16667 NA 3' UTR (NM_021116, exon 20 of 20) 3' UTR (NM_021116, exon 20 of 20) 46243 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 275.833-20 chr6 166321557 166321825 + 2.16667 NA intron (NR_130113, intron 6 of 6) intron (NR_130113, intron 6 of 6) -13299 NM_175922 285800 Hs.731862 NM_175922 ENSG00000176381 PRR18 - proline rich 18 protein-coding 471.167-7 chr7 24847613 24847977 + 2.16667 NA intron (NM_145321, intron 10 of 20) intron (NM_145321, intron 10 of 20) 44826 NM_145320 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 429.334 chr12 40735019 40735346 + 2.16667 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 42740 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 448.501 chr1 153533559 153533821 + 2.16667 NA TTS (NM_014624) TTS (NM_014624) 2301 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA|S10A6 S100 calcium binding protein A6 protein-coding 806.5 chr2 20442656 20443870 + 2.16667 NA Intergenic Intergenic -3811 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 594.667-2 chr14 87745235 87745780 + 2.16667 NA Intergenic Intergenic -90213 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 526.334-5 chr6 10954428 10954785 + 2.16667 NA promoter-TSS (NR_125851) promoter-TSS (NR_125851) -517 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 248.334-5 chr2 31471109 31471289 + 2.16667 NA Intergenic Intergenic -56457 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 860.167 chr12 122123108 122123861 + 2.16667 NA intron (NM_014938, intron 1 of 16).2 intron (NM_014938, intron 1 of 16).2 -44235 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 169.5-44 chr7 86995185 86995288 + 2.16667 NA intron (NM_001142749, intron 1 of 21) MLT1L|LTR|ERVL-MaLR -29337 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 220.834-2 chr12 85513291 85513439 + 2.16667 NA Intergenic L1M5|LINE|L1 233145 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 534.001-2 chr21 43789328 43789729 + 2.16667 NA promoter-TSS (NM_003683) promoter-TSS (NM_003683) -49 NM_003683 8568 Hs.110757 NM_003683 ENSG00000160214 RRP1 D21S2056E|NNP-1|NOP52|RRP1A ribosomal RNA processing 1 protein-coding 296.167-8 chr15 54629702 54629842 + 2.16667 NA 3' UTR (NM_001329919, exon 32 of 32) 3' UTR (NM_001329919, exon 32 of 32) -426975 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 440.167-4 chr12 85076754 85077076 + 2.16667 NA intron (NM_001079910, intron 11 of 26) MIR3|SINE|MIR 40564 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 728.834-2 chrX 104913105 104913742 + 2.16667 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 307270 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 432.001 chr17 48306621 48307044 + 2.16667 NA intron (NR_131239, intron 2 of 2) intron (NR_131239, intron 2 of 2) 12485 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 315.333-8 chr12 111701873 111702196 + 2.16667 NA intron (NM_025247, intron 2 of 20) intron (NM_025247, intron 2 of 20) 15981 NM_001136538 80724 Hs.331141 NM_025247 ENSG00000111271 ACAD10 - acyl-CoA dehydrogenase family member 10 protein-coding 347.834-10 chr7 90912268 90912566 + 2.16667 NA intron (NM_012395, intron 6 of 13) intron (NM_012395, intron 6 of 13) 202601 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 849.334-2 chr7 139499719 139500557 + 2.16667 NA Intergenic Intergenic -16465 NM_198508 346689 Hs.17572 NM_198508 ENSG00000188883 KLRG2 CLEC15B killer cell lectin like receptor G2 protein-coding 409.001 chr2 96816207 96816509 + 2.16667 NA promoter-TSS (NM_017623) promoter-TSS (NM_017623) 90 NM_017623 26505 Hs.711617 NM_017623 ENSG00000168763 CNNM3 ACDP3 cyclin and CBS domain divalent metal cation transport mediator 3 protein-coding 244.667-18 chr2 235780481 235780666 + 2.16667 NA intron (NM_001037131, intron 6 of 17) intron (NM_001037131, intron 6 of 17) -262652 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 430.501-4 chr3 150191812 150192136 + 2.16667 NA Intergenic L1MC1|LINE|L1 -46545 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 209.667-41 chr6 85615456 85615561 + 2.16667 NA intron (NM_001159676, intron 9 of 10) intron (NM_001159676, intron 9 of 10) -21352 NM_001350532 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 195-8 chr12 39252967 39253138 + 2.16667 NA Intergenic Intergenic 190068 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 394.501-3 chr9 22038193 22038514 + 2.16667 NA intron (NR_003529, intron 3 of 18) (ATTT)n|Simple_repeat|Simple_repeat -29040 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 339.5-12 chr5 51596862 51597046 + 2.16667 NA Intergenic Intergenic 213506 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 284-3 chr10 60114010 60114217 + 2.16667 NA intron (NM_001204403, intron 27 of 43) intron (NM_001204403, intron 27 of 43) 26903 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 637-2 chr5 168472040 168472590 + 2.16667 NA TTS (NM_015238) TTS (NM_015238) -14156 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 559.333 chr12 26830936 26831457 + 2.16667 NA intron (NM_002223, intron 1 of 56) intron (NM_002223, intron 1 of 56) 1998 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 260-22 chr4 144766081 144766215 + 2.16667 NA Intergenic Intergenic 119992 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 566.667-4 chr6 87930048 87930471 + 2.16667 NA Intergenic Intergenic -117582 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 349.666-2 chr4 70984521 70984798 + 2.16667 NA 3' UTR (NM_001244766, exon 7 of 7) 3' UTR (NM_001244766, exon 7 of 7) -8990 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 394.167-6 chr11 111374900 111375134 + 2.16667 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 4258 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 279.333-5 chr10 101634536 101634902 + 2.16667 NA intron (NR_136613, intron 4 of 7) L1M5|LINE|L1 -33222 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 365.167-3 chr2 13056133 13056419 + 2.16667 NA Intergenic Intergenic -49263 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 578.501 chr19 47863380 47863998 + 2.16667 NA Intergenic Intergenic 22626 NM_003167 6822 Hs.515835 NM_003167 ENSG00000105398 SULT2A1 DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa sulfotransferase family 2A member 1 protein-coding 295.333-6 chr11 111621486 111622082 + 2.16667 NA intron (NM_015191, intron 3 of 14) AluSx|SINE|Alu 19335 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 235-30 chr6 162343385 162343649 + 2.16667 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -383615 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 405-2 chr1 223017450 223017827 + 2.16667 NA Intergenic THE1A|LTR|ERVL-MaLR 89214 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 406.501 chr10 123967880 123968095 + 2.16667 NA Intergenic Intergenic -76180 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 205.333-18 chr18 77592635 77592832 + 2.16667 NA Intergenic Intergenic 342885 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 317-12 chr8 41834711 41835281 + 2.16667 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) -37374 NM_020476 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 769.168 chr22 43882806 43883514 + 2.16667 NA intron (NM_001177675, intron 5 of 6) L2b|LINE|L2 8853 NM_001177675 150379 Hs.248086 NM_138814 ENSG00000100341 PNPLA5 GS2L|dJ388M5|dJ388M5.4 patatin like phospholipase domain containing 5 protein-coding 349.5-11 chr5 74387808 74388051 + 2.16667 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 65443 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 297.834-2 chr10 120268136 120268462 + 2.16667 NA Intergenic L1ME1|LINE|L1 86924 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 470.834-6 chr9 118172033 118172273 + 2.16667 NA Intergenic MER113|DNA|hAT-Charlie 467750 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 302.167-8 chr2 123253058 123253388 + 2.16667 NA Intergenic L1MC3|LINE|L1 -179742 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 218.833-14 chr20 22795973 22796136 + 2.16667 NA Intergenic Intergenic -110710 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 514.333-5 chr2 196194544 196194977 + 2.16667 NA 3' UTR (NM_001304840, exon 27 of 27) 3' UTR (NM_001304840, exon 27 of 27) -23182 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 250.5-12 chr18 594158 594322 + 2.16667 NA Intergenic L3|LINE|CR1 -2758 NM_014410 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 354-4 chr12 9057460 9057711 + 2.16667 NA intron (NR_034140, intron 2 of 2) intron (NR_034140, intron 2 of 2) 7485 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 412.001-3 chr15 100386497 100386749 + 2.16667 NA intron (NR_120374, intron 1 of 4) L1MD2|LINE|L1 13684 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 519.833-2 chr19 2155864 2156206 + 2.16667 NA Intergenic AluY|SINE|Alu -4469 NM_001261826 8943 Hs.512815 NM_003938 ENSG00000065000 AP3D1 ADTD|HPS10|hBLVR adaptor related protein complex 3 subunit delta 1 protein-coding 276.167-20 chr6 151511185 151511408 + 2.16667 NA intron (NM_025059, intron 1 of 10) L4_C_Mam|LINE|RTE-X 17279 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 340.333-8 chr19 47813659 47814092 + 2.16667 NA Intergenic Intergenic -8062 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 247.5-46 chr8 79356233 79356492 + 2.16667 NA Intergenic L1ME3A|LINE|L1 24174 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 540.501 chr12 55926698 55927096 + 2.16667 NA intron (NM_032345, intron 1 of 2) intron (NM_032345, intron 1 of 2) 228 NM_001143853 84305 Hs.505687 NM_032345 ENSG00000170473 PYM1 PYM|WIBG PYM homolog 1, exon junction complex associated factor protein-coding 413.167-4 chr2 108383273 108383528 + 2.16667 NA intron (NM_006588, intron 4 of 6) intron (NM_006588, intron 4 of 6) 5446 NM_001321770 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 198.667-43 chr7 30255342 30255466 + 2.16667 NA intron (NR_136267, intron 2 of 3) MIRb|SINE|MIR -29193 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 342.334-5 chr8 70380019 70380331 + 2.16667 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 23215 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 423.667-9 chrX 138748460 138748682 + 2.16667 NA intron (NM_001139498, intron 2 of 5) MLT1B|LTR|ERVL-MaLR -9218 NM_033642 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 285.667-9 chr14 49447256 49447461 + 2.16667 NA Intergenic Intergenic 139022 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 185.667-17 chr12 96061963 96062096 + 2.16667 NA Intergenic Intergenic -18509 NM_001256643 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 390.666 chr1 27395208 27395810 + 2.16667 NA 3' UTR (NM_005281, exon 2 of 2) 3' UTR (NM_005281, exon 2 of 2) 2887 NM_005281 2827 Hs.66542 NM_005281 ENSG00000181773 GPR3 ACCA G protein-coupled receptor 3 protein-coding 411-2 chr2 237121992 237122372 + 2.16667 NA Intergenic Zaphod2|DNA|hAT-Tip100 36293 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 965.167 chr17 50478282 50479025 + 2.16667 NA promoter-TSS (NM_018346) promoter-TSS (NM_018346) -147 NR_130911 55316 Hs.8033 NM_018346 ENSG00000136444 RSAD1 HemW radical S-adenosyl methionine domain containing 1 protein-coding 370.5-6 chr14 75531373 75531647 + 2.16667 NA intron (NM_006399, intron 2 of 2) intron (NM_006399, intron 2 of 2) 9041 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 485.167 chr10 24554561 24554887 + 2.16667 NA Intergenic Intergenic 68119 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 243.834-10 chr8 103931015 103931446 + 2.16667 NA intron (NM_001348507, intron 9 of 21) intron (NM_001348507, intron 9 of 21) 112010 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 565.335 chr8 100307809 100308221 + 2.16667 NA intron (NM_001280539, intron 2 of 10) intron (NM_001280539, intron 2 of 10) 1360 NM_001353838 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 284-8 chr15 91302772 91303060 + 2.16667 NA TTS (NM_001323031) TTS (NM_001323031) -160423 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 702.835 chr17 7012112 7012608 + 2.16667 NA promoter-TSS (NR_040089) promoter-TSS (NR_040089) -26 NR_040089 100506713 Hs.422967 NR_040089 ENSG00000215067 ALOX12-AS1 - ALOX12 antisense RNA 1 ncRNA 586.334 chr16 85253135 85253593 + 2.16667 NA Intergenic Intergenic -29594 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 308.834-5 chr15 66386706 66387122 + 2.16667 NA promoter-TSS (NM_002755) promoter-TSS (NM_002755) 41 NM_002755 5604 Hs.145442 NM_002755 ENSG00000169032 MAP2K1 CFC3|MAPKK1|MEK1|MKK1|PRKMK1 mitogen-activated protein kinase kinase 1 protein-coding 356.501 chr7 34670284 34670586 + 2.16667 NA intron (NM_207172, intron 1 of 8) intron (NM_207172, intron 1 of 8) 12196 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 269.334-5 chr16 59471120 59471264 + 2.16667 NA Intergenic MER58B|DNA|hAT-Charlie 283999 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 282.667-2 chr1 163570183 163570517 + 2.16667 NA Intergenic Intergenic -147159 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 494.667-2 chr11 109852872 109853332 + 2.16667 NA Intergenic Intergenic -240290 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 220.333-30 chr8 55798746 55798853 + 2.16667 NA intron (NM_001317902, intron 6 of 10) intron (NM_001317902, intron 6 of 10) 25353 NM_001317902 96764 Hs.335068 NM_024831 ENSG00000137574 TGS1 NCOA6IP|PIMT|PIPMT trimethylguanosine synthase 1 protein-coding 185.5-18 chr16 65401825 65402026 + 2.16667 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 174375 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 186-16 chr17 76877946 76878111 + 2.16667 NA intron (NM_144677, intron 2 of 16) intron (NM_144677, intron 2 of 16) 5381 NM_198955 146664 Hs.144531 NM_144677 ENSG00000167889 MGAT5B GnT-IX|GnT-VB alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B protein-coding 389.5-2 chr2 55552159 55552368 + 2.16667 NA intron (NM_020463, intron 14 of 14) intron (NM_020463, intron 14 of 14) 32668 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 758.5-2 chr4 118740811 118741413 + 2.16667 NA intron (NM_014822, intron 15 of 22) intron (NM_014822, intron 15 of 22) 55720 NM_020961 57721 Hs.596872 NM_020961 ENSG00000145388 METTL14 hMETTL14 methyltransferase like 14 protein-coding 637.167 chr10 102743399 102743959 + 2.16667 NA promoter-TSS (NM_001083913) promoter-TSS (NM_001083913) -269 NM_001083913 54838 Hs.500897 NM_017787 ENSG00000166272 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1 like protein-coding 339.5-3 chr10 94430651 94430873 + 2.16667 NA intron (NM_015188, intron 1 of 12) intron (NM_015188, intron 1 of 12) 28221 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 407.5-16 chr9 108951045 108951558 + 2.16667 NA intron (NM_003798, intron 14 of 18) AluY|SINE|Alu 16901 NM_017832 54942 Hs.29276 NM_017832 ENSG00000119328 ABITRAM C9orf6|CG-8|FAM206A|Simiate actin binding transcription modulator protein-coding 530.667-4 chr5 120533105 120533433 + 2.16667 NA intron (NM_001308088, intron 1 of 3) L2a|LINE|L2 1805 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 634.501-3 chr9 85690047 85690451 + 2.16667 NA intron (NM_015239, intron 3 of 25) intron (NM_015239, intron 3 of 25) 51780 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 1316.5 chr1 74732826 74734291 + 2.16667 NA promoter-TSS (NM_001130043) promoter-TSS (NM_001130043) -150 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 506.168 chr7 26190794 26191107 + 2.16667 NA 3' UTR (NM_031243, exon 12 of 12) 3' UTR (NM_031243, exon 12 of 12) 9796 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 564-8 chr17 65231541 65232127 + 2.16667 NA Intergenic Intergenic 94464 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 171.834-2 chr17 60945148 60945266 + 2.16667 NA intron (NM_001330413, intron 13 of 25) L1MEf|LINE|L1 267356 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 860.501 chr2 219521151 219521750 + 2.16667 NA intron (NM_018674, intron 1 of 9) intron (NM_018674, intron 1 of 9) 7280 NM_018674 55515 Hs.87469 NM_018674 ENSG00000072182 ASIC4 ACCN4|BNAC4 acid sensing ion channel subunit family member 4 protein-coding 317.667-13 chr8 86103391 86103617 + 2.16667 NA intron (NM_152565, intron 1 of 7) intron (NM_152565, intron 1 of 7) 4594 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 570.333 chr1 9942355 9943052 + 2.16667 NA promoter-TSS (NM_022787) promoter-TSS (NM_022787) -220 NM_001297778 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 514.667-6 chr2 184956715 184957349 + 2.16667 NA Intergenic LTR40b|LTR|ERVL 210040 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 345.5-5 chr12 45170368 45170633 + 2.16667 NA Intergenic Intergenic 45506 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 387.833-5 chr4 8407250 8407533 + 2.16667 NA intron (NM_003501, intron 6 of 17) LTR13|LTR|ERVK 33332 NM_003501 8310 Hs.479122 NM_003501 ENSG00000087008 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 337.5 chr10 21117869 21118158 + 2.16667 NA intron (NM_001173484, intron 2 of 6) MIR|SINE|MIR -55977 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 421.667-4 chr4 114762165 114762398 + 2.16667 NA Intergenic Intergenic 105522 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 250.667-27 chr3 34947949 34948118 + 2.16667 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 445990 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 243.166-3 chr17 59837681 59837894 + 2.16667 NA intron (NM_001329395, intron 11 of 12) intron (NM_001329395, intron 11 of 12) -3479 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 313.001 chr19 51392642 51392827 + 2.16667 NA Intergenic AluJb|SINE|Alu -2143 NM_001193623 147646 Hs.148344 NM_001193623 ENSG00000262874 C19orf84 - chromosome 19 open reading frame 84 protein-coding 308.834-7 chr3 21784094 21784262 + 2.16667 NA Intergenic Intergenic -32968 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 437.5-7 chr5 60668948 60669307 + 2.16667 NA intron (NM_001145208, intron 2 of 9) intron (NM_001145208, intron 2 of 9) 31039 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 444.167-2 chr2 38114384 38114589 + 2.16667 NA Intergenic LTR87|LTR|ERVL? -16619 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 276.501-2 chr6 63653708 63653878 + 2.16667 NA intron (NM_001370350, intron 2 of 14) L1MA5|LINE|L1 7267 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 533.834 chr11 73660928 73661577 + 2.16667 NA intron (NM_001130036, intron 5 of 5) CpG 12339 NM_001130036 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 845.835 chr2 46364627 46365500 + 2.16667 NA intron (NM_001430, intron 6 of 15) intron (NM_001430, intron 6 of 15) 29104 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 171.334-2 chr10 72685585 72685779 + 2.16667 NA Intergenic AluJb|SINE|Alu -6449 NM_001270679 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 516.334 chr22 33203135 33203474 + 2.16667 NA Intergenic Intergenic 94775 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 392.167 chr2 130181668 130181929 + 2.16667 NA promoter-TSS (NM_001330282) promoter-TSS (NM_001330282) -41 NM_001171083 55627 Hs.516450 NM_017751 ENSG00000136699 SMPD4 NET13|NSMASE-3|NSMASE3|SKNY sphingomyelin phosphodiesterase 4 protein-coding 267.667-7 chr10 60978841 60979114 + 2.16667 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) 22020 NM_001350903 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 569.167-3 chr8 98967349 98967703 + 2.16667 NA Intergenic Intergenic 23084 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 755.001 chr10 84076083 84076720 + 2.16667 NA Intergenic Intergenic -63108 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 279.834-10 chr8 113361270 113361400 + 2.16667 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 15817 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 1112 chr7 64950946 64951863 + 2.16667 NA Intergenic Intergenic 39632 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 550.667 chr15 97533513 97534005 + 2.16667 NA Intergenic L2b|LINE|L2 -11948 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 626.501 chr8 111253293 111253867 + 2.16667 NA Intergenic LTR80B|LTR|ERVL -17377 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 465.667-3 chr6 163198152 163198423 + 2.16667 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -6285 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 607.334 chr8 17245269 17245585 + 2.16667 NA intron (NM_013354, intron 1 of 6) MIR3|SINE|MIR 1031 NM_001322089 29883 Hs.587465 NM_013354 ENSG00000198791 CNOT7 CAF-1|CAF1|Caf1a|hCAF-1 CCR4-NOT transcription complex subunit 7 protein-coding 395.667-6 chr20 35062405 35062782 + 2.16667 NA intron (NM_199368, intron 3 of 18) L1MB8|LINE|L1 30214 NM_015638 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 383.001-2 chr7 33611861 33612127 + 2.16667 NA intron (NM_001348041, intron 22 of 22) intron (NM_001348041, intron 22 of 22) -292921 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 252.334-3 chr12 71403612 71403749 + 2.16667 NA Intergenic L1MA10|LINE|L1 -36118 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 304.5-14 chr2 119826341 119826632 + 2.16667 NA intron (NM_002830, intron 2 of 26) MER20|DNA|hAT-Charlie 66564 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 641.833 chr18 68623309 68623974 + 2.16667 NA Intergenic Intergenic 91467 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 222.5-12 chr11 77028542 77028736 + 2.16667 NA Intergenic Intergenic -5759 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 515.334 chr1 48931487 48931845 + 2.16667 NA intron (NM_001323575, intron 5 of 12) AluJb|SINE|Alu -154697 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 248.667-16 chr19 57947804 57947984 + 2.16667 NA promoter-TSS (NM_005773) promoter-TSS (NM_005773) -188 NM_005773 10172 Hs.596242 NM_005773 ENSG00000152454 ZNF256 BMZF-3|BMZF3 zinc finger protein 256 protein-coding 338.167-3 chr10 29046578 29046788 + 2.16667 NA Intergenic Intergenic 200275 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 813.833 chr2 63188662 63189562 + 2.16667 NA intron (NR_148705, intron 13 of 16) intron (NR_148705, intron 13 of 16) -69570 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 307.167-17 chr22 38000058 38000438 + 2.16667 NA intron (NM_001301130, intron 5 of 5) MIR3|SINE|MIR 11454 NR_039759 100616146 NR_039759 ENSG00000284266 MIR4534 - microRNA 4534 ncRNA 539.667-2 chr11 77856910 77857342 + 2.16667 NA intron (NM_001316962, intron 3 of 4) intron (NM_001316962, intron 3 of 4) 15988 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 587.667-2 chr10 29377102 29377729 + 2.16667 NA Intergenic AluSx|SINE|Alu -32119 NR_110924 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 617.334 chr13 51070018 51070697 + 2.16667 NA Intergenic Intergenic -4200 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 361.5-6 chr16 67101038 67101334 + 2.16667 NA TTS (NM_001368710) TTS (NM_001368710) -8755 NM_001320543 80262 Hs.513666 NM_025187 ENSG00000125149 C16orf70 C16orf6|LIN10|lin-10 chromosome 16 open reading frame 70 protein-coding 317.001 chr8 77169855 77170058 + 2.16667 NA Intergenic Intergenic -168912 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 241-32 chr7 127708478 127709152 + 2.16667 NA intron (NM_014390, intron 9 of 23) intron (NM_014390, intron 9 of 23) 56621 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 216.834-3 chr14 71716023 71716201 + 2.16667 NA intron (NM_001354286, intron 18 of 24) intron (NM_001354286, intron 18 of 24) 129814 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 340.333-3 chr10 57441676 57441907 + 2.16667 NA Intergenic L1MB7|LINE|L1 -137232 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 284-5 chr11 57741273 57741484 + 2.16667 NA promoter-TSS (NM_170746) promoter-TSS (NM_170746) -113 NM_170746 280636 Hs.655373 NM_170746 ENSG00000211450 SELENOH C11orf31|C17orf10|SELH selenoprotein H protein-coding 718.501 chr3 103533447 103533809 + 2.16667 NA Intergenic Intergenic -9512 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 602.667-2 chr22 18076493 18077646 + 2.16667 NA promoter-TSS (NM_001127649) promoter-TSS (NM_001127649) -851 NM_001199319 55670 Hs.517400 NM_017929 ENSG00000215193 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 417.166-2 chr12 10046098 10046558 + 2.16667 NA intron (NM_207345, intron 2 of 8) intron (NM_207345, intron 2 of 8) 15646 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 566.501-2 chr14 38527600 38528043 + 2.16667 NA Intergenic Intergenic -271728 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 343.5-2 chr10 72340664 72340830 + 2.16667 NA intron (NR_157570, intron 5 of 8) intron (NR_157570, intron 5 of 8) 14172 NR_157570 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 462.334-3 chr13 107384274 107384626 + 2.16667 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -63487 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 278.666-3 chr14 44764707 44764992 + 2.16667 NA intron (NR_146457, intron 4 of 4) Charlie3|DNA|hAT-Charlie 34277 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 221.167-14 chr15 69092269 69092432 + 2.16667 NA non-coding (NR_026949, exon 3 of 4) non-coding (NR_026949, exon 3 of 4) 11500 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 297.167-10 chr7 11236476 11236722 + 2.16667 NA Intergenic Intergenic 262727 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 914.167-2 chr6 154868025 154868553 + 2.16667 NA Intergenic Intergenic 14929 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 254.833-13 chr2 48348022 48348252 + 2.16667 NA intron (NM_002158, intron 3 of 6) L1MEg|LINE|L1 33455 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 433.334-3 chr4 33468324 33468541 + 2.16667 NA Intergenic LTR84b|LTR|ERVL 571461 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 377.501-3 chr6 164597722 164598020 + 2.16667 NA Intergenic Intergenic 224192 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 531.999-2 chr5 122896920 122897393 + 2.16667 NA intron (NM_014035, intron 1 of 6) intron (NM_014035, intron 1 of 6) 51543 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 369.667-6 chr7 79432764 79433198 + 2.16667 NA intron (NM_001301128, intron 1 of 20) LTR78B|LTR|ERV1 -19976 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 265.5-5 chr11 106101330 106101500 + 2.16667 NA Intergenic Intergenic -23677 NM_152433 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 340.667-13 chr7 50094028 50094281 + 2.16667 NA promoter-TSS (NM_007009) promoter-TSS (NM_007009) -908 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 215.167-10 chr13 31575666 31575787 + 2.16667 NA Intergenic Intergenic -163800 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 345.167 chr10 104171752 104172011 + 2.16667 NA intron (NM_025145, intron 20 of 37) L3|LINE|CR1 47002 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 327.5-18 chr3 26049751 26049972 + 2.16667 NA Intergenic Intergenic -176166 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 380.834 chr1 85261553 85261840 + 2.16667 NA Intergenic L2a|LINE|L2 -2034 NR_024113 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 532.833 chr1 189062636 189063196 + 2.16667 NA Intergenic Intergenic 1413094 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 632.333 chr1 161787627 161787994 + 2.16667 NA intron (NM_007348, intron 4 of 15) L1M5|LINE|L1 21490 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 741.334 chr1 219204295 219204829 + 2.16667 NA intron (NM_001300770, intron 3 of 4) intron (NM_001300770, intron 3 of 4) 29593 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 388.334-8 chr3 189518861 189519231 + 2.16667 NA Intergenic L1M2a1|LINE|L1 -77700 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 310.667-7 chr2 14068495 14068828 + 2.16667 NA Intergenic Intergenic 332297 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 459.834-2 chr14 61704452 61704742 + 2.16667 NA intron (NM_001243084, intron 1 of 14) Charlie8|DNA|hAT-Charlie 6975 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 613.333-3 chr3 13896213 13896777 + 2.16667 NA Intergenic Intergenic -16424 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 496.334-2 chr10 121608546 121608878 + 2.16667 NA Intergenic CpG -10254 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 554.167-2 chr5 74766901 74767511 + 2.16667 NA promoter-TSS (NM_001364506) promoter-TSS (NM_001364506) -43 NM_001271665 10412 Hs.482526 NM_014886 ENSG00000164346 NSA2 CDK105|HCL-G1|HCLG1|HUSSY-29|HUSSY29|TINP1 NSA2 ribosome biogenesis factor protein-coding 658.834 chr13 108227586 108228198 + 2.16667 NA intron (NM_032859, intron 1 of 1) intron (NM_032859, intron 1 of 1) 9500 NM_032859 84945 Hs.183528 NM_032859 ENSG00000139826 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 506.667-7 chr2 196890361 196890732 + 2.16667 NA intron (NM_001321099, intron 11 of 27) intron (NM_001321099, intron 11 of 27) 36161 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 567.168 chr4 67629079 67629523 + 2.16667 NA intron (NM_018227, intron 26 of 32) intron (NM_018227, intron 26 of 32) 70574 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 286.667-14 chr20 1509373 1509673 + 2.16667 NA Intergenic Intergenic -18103 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 790.666 chr22 19479184 19479796 + 2.16667 NA promoter-TSS (NM_005659) promoter-TSS (NM_005659) 24 NM_001369291 8318 Hs.474217 NM_003504 ENSG00000093009 CDC45 CDC45L|CDC45L2|MGORS7|PORC-PI-1 cell division cycle 45 protein-coding 321-17 chr4 113865296 113865477 + 2.16667 NA Intergenic Intergenic -103459 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 295-13 chr2 205991433 205991584 + 2.16667 NA Intergenic Intergenic 94666 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 674.167 chr18 48446386 48447053 + 2.16667 NA Intergenic Intergenic -34134 NM_001371287 659.667-2 chr6 138691554 138692178 + 2.16667 NA non-coding (NR_033896, exon 1 of 4) non-coding (NR_033896, exon 1 of 4) 198 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 908.833-3 chr3 9502803 9503712 + 2.16667 NA intron (NM_198560, intron 3 of 3) intron (NM_198560, intron 3 of 3) 50565 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 373-11 chr7 49001447 49001897 + 2.16667 NA Intergenic LTR41C|LTR|ERVL 77125 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 398.5-6 chr2 184010401 184010652 + 2.16667 NA Intergenic MLT2B5|LTR|ERVL -368449 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 443.667-10 chr6 70103756 70103964 + 2.16667 NA intron (NM_001858, intron 16 of 50) L2b|LINE|L2 179337 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 329.5-10 chr2 26453046 26453274 + 2.16667 NA intron (NM_145038, intron 13 of 16) intron (NM_145038, intron 13 of 16) 24964 NM_004802 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 222.834-9 chr5 156956853 156956963 + 2.16667 NA intron (NM_138379, intron 1 of 8) intron (NM_138379, intron 1 of 8) 6318 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 574.167-3 chr16 72832077 72832762 + 2.16667 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) -167449 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 406.167-2 chr10 64986210 64986398 + 2.16667 NA Intergenic L1MC4a|LINE|L1 -61786 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 268.167-21 chr9 99820121 99820251 + 2.16667 NA promoter-TSS (NR_109802) promoter-TSS (NR_109802) -297 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 361.167 chr1 18217728 18218180 + 2.16667 NA intron (NM_032880, intron 1 of 9) MIRc|SINE|MIR 110156 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 197.5-26 chr4 108614890 108614998 + 2.16667 NA intron (NR_026968, intron 1 of 3) intron (NR_026968, intron 1 of 3) 5513 NR_026968 285456 Hs.683863 NM_182591 ENSG00000234492 RPL34-AS1 - RPL34 antisense RNA 1 (head to head) ncRNA 358.834 chr1 171081158 171081354 + 2.16667 NA Intergenic Intergenic -9649 NM_001002294 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 375.333-10 chr6 140724457 140724772 + 2.16667 NA Intergenic Intergenic 40800 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 684.5-3 chr2 42986420 42987193 + 2.16667 NA Intergenic L1ME1|LINE|L1 52737 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 413.334-7 chr22 32473544 32473911 + 2.16667 NA Intergenic MLT1F|LTR|ERVL-MaLR -1084 NM_012179 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 332-8 chr15 35293217 35293646 + 2.16667 NA Intergenic Intergenic 56105 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 251.5-5 chr10 90353472 90353694 + 2.16667 NA Intergenic (TTG)n|Simple_repeat|Simple_repeat 187222 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 370.667-7 chr5 3178905 3179196 + 2.16667 NA intron (NR_104617, intron 1 of 1) intron (NR_104617, intron 1 of 1) 1215 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 309.833-5 chr21 45923407 45923610 + 2.16667 NA intron (NR_145493, intron 10 of 12) intron (NR_145493, intron 10 of 12) -49462 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 333.167-6 chr8 50710326 50710645 + 2.16667 NA intron (NM_001287814, intron 16 of 16) intron (NM_001287814, intron 16 of 16) 546354 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 857.333 chr1 91511387 91511981 + 2.16667 NA exon (NM_003503, exon 5 of 12) exon (NM_003503, exon 5 of 12) 10576 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 460.834 chr14 64910867 64911286 + 2.16667 NA Intergenic L2|LINE|L2 -3285 NM_001204063 91612 Hs.731537 NM_145165 ENSG00000258289 CHURC1 C14orf52|My015|chch churchill domain containing 1 protein-coding 327.667-15 chr6 56666084 56666281 + 2.16667 NA intron (NM_001144770, intron 7 of 94) intron (NM_001144770, intron 7 of 94) -23293 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 503.834 chr11 10217142 10217442 + 2.16667 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 76915 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 319.167-8 chr16 19521843 19522138 + 2.16667 NA non-coding (NR_136689, exon 1 of 6) non-coding (NR_136689, exon 1 of 6) 108 NM_001324066 51573 Hs.512607 NM_016641 ENSG00000006007 GDE1 363E6.2|MIR16 glycerophosphodiester phosphodiesterase 1 protein-coding 575.166-2 chr22 37166459 37166954 + 2.16667 NA intron (NM_001346222, intron 1 of 9) intron (NM_001346222, intron 1 of 9) 8350 NM_001346223 3560 Hs.474787 NM_000878 ENSG00000100385 IL2RB CD122|IL15RB|P70-75 interleukin 2 receptor subunit beta protein-coding 314.5-15 chr5 59142422 59142618 + 2.16667 NA intron (NM_001364603, intron 5 of 15) intron (NM_001364603, intron 5 of 15) -103044 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 444.833-5 chr6 52407361 52407638 + 2.16667 NA 3' UTR (NM_133367, exon 2 of 2) 3' UTR (NM_133367, exon 2 of 2) -12843 NM_018100 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 505.667-4 chr5 45696438 45696863 + 2.16667 NA promoter-TSS (NM_021072) promoter-TSS (NM_021072) -270 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 378.501 chr4 125703978 125704233 + 2.16667 NA Intergenic Intergenic 196846 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 533.167-2 chr21 45478123 45478510 + 2.16667 NA promoter-TSS (NR_106873) promoter-TSS (NR_106873) 50 NR_106873 102465489 NR_106873 ENSG00000275167 MIR6815 hsa-mir-6815 microRNA 6815 ncRNA 419.166-3 chr5 177554562 177554951 + 2.16667 NA promoter-TSS (NM_001366499) promoter-TSS (NM_001366499) -193 NM_001190946 54540 Hs.484289 NM_019057 ENSG00000146067 FAM193B IRIZIO family with sequence similarity 193 member B protein-coding 609.167-2 chr14 60163227 60163783 + 2.16667 NA intron (NM_001322280, intron 1 of 6) MER106B|DNA|hAT-Charlie 1893 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 427.001 chr2 142314396 142314656 + 2.16667 NA Intergenic Intergenic -182825 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 343-7 chr20 53172104 53172407 + 2.16667 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -13028 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 529.001 chr1 150995887 150996144 + 2.16667 NA TTS (NM_003568) TTS (NM_003568) 10782 NM_001163260 55793 Hs.743952 NM_018379 ENSG00000143409 MINDY1 FAM63A|MINDY-1 MINDY lysine 48 deubiquitinase 1 protein-coding 519.667-4 chr7 48426937 48427406 + 2.16667 NA intron (NM_152701, intron 41 of 61) intron (NM_152701, intron 41 of 61) 255713 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 536.834-3 chr2 116428899 116429281 + 2.16667 NA Intergenic Intergenic 1085275 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 330.667-7 chr21 21288998 21289197 + 2.16667 NA intron (NM_001352592, intron 5 of 18) intron (NM_001352592, intron 5 of 18) 141935 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 274-32 chr7 157958478 157958695 + 2.16667 NA intron (NM_130843, intron 10 of 21) L1MB3|LINE|L1 104001 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 428.5-2 chr12 60658926 60659152 + 2.16667 NA Intergenic Intergenic 969669 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 357.334-6 chr8 122601604 122601791 + 2.16667 NA Intergenic L1ME4c|LINE|L1 -33053 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 587.667 chr1 89482941 89483489 + 2.16667 NA Intergenic Intergenic -41614 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 878-3 chr20 14333741 14334479 + 2.16667 NA intron (NM_198391, intron 1 of 2) intron (NM_198391, intron 1 of 2) 3502 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 334.834-6 chr9 77708085 77708492 + 2.16667 NA Intergenic L1MCa|LINE|L1 -59966 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 700.167-3 chr13 75258300 75258790 + 2.16667 NA Intergenic Intergenic 17957 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 316.334-11 chr5 134250106 134250368 + 2.16667 NA Intergenic MIR3|SINE|MIR -24164 NM_002715 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 471.5-2 chr17 8997947 8998486 + 2.16667 NA Intergenic Intergenic -23294 NM_004822 9423 Hs.660885 NM_004822 ENSG00000065320 NTN1 MRMV4|NTN1L netrin 1 protein-coding 713.334-2 chr10 24503602 24504235 + 2.16667 NA intron (NM_001321681, intron 5 of 13) intron (NM_001321681, intron 5 of 13) 37387 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 638.333-2 chr8 111934268 111934828 + 2.16667 NA Intergenic Intergenic 557909 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 336.834-8 chr8 81817293 81817473 + 2.16667 NA intron (NM_001348189, intron 6 of 9) intron (NM_001348189, intron 6 of 9) 24802 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 461.334 chr17 69419884 69420119 + 2.16667 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 5304 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 602.666 chr18 56869155 56869770 + 2.16667 NA intron (NM_015285, intron 20 of 27) intron (NM_015285, intron 20 of 27) 202657 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 329.334-7 chr7 153329325 153329525 + 2.16667 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat 82809 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 295.5-12 chr3 156535091 156535483 + 2.16667 NA intron (NM_172159, intron 13 of 13) intron (NM_172159, intron 13 of 13) 18838 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 344.5-2 chr10 41889482 41889789 + 2.16667 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 478410 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 587.666-2 chr12 123584136 123584537 + 2.16667 NA promoter-TSS (NM_001321445) promoter-TSS (NM_001321445) -9 NR_110049 101927415 Hs.636524 NR_110049 TMED2-DT - TMED2 divergent transcript ncRNA 351.833-6 chr21 33194390 33194617 + 2.16667 NA Intergenic AluSx1|SINE|Alu -24267 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 600-3 chr2 96510410 96510915 + 2.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -2553 NR_104346 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 415.834 chr15 73081524 73081803 + 2.16667 NA intron (NM_002499, intron 1 of 28) AluJr|SINE|Alu 29179 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 223.667-36 chr22 50278489 50278614 + 2.16667 NA intron (NM_012401, intron 29 of 36) intron (NM_012401, intron 29 of 36) -8171 NM_002751 5600 Hs.57732 NM_002751 ENSG00000185386 MAPK11 P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta mitogen-activated protein kinase 11 protein-coding 224.833-17 chr4 44493976 44494277 + 2.16667 NA Intergenic L1M4|LINE|L1 -45317 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 286.667-9 chr14 44785484 44785632 + 2.16667 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 13568 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 339.834-6 chr7 126861141 126861423 + 2.16667 NA intron (NM_001371085, intron 6 of 10) L1ME3C|LINE|L1 196902 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 263.167-14 chr5 45957345 45957548 + 2.16667 NA Intergenic ALR/Alpha|Satellite|centr -261066 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 523.166 chr1 210407009 210407787 + 2.16667 NA intron (NM_001122834, intron 6 of 11) intron (NM_001122834, intron 6 of 11) 78032 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 306.167-4 chr14 32230090 32230446 + 2.16667 NA Intergenic Intergenic -26999 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 257.5-25 chr5 150306263 150306435 + 2.16667 NA Intergenic Tigger15a|DNA|TcMar-Tigger -3444 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 175.5-15 chr12 131121867 131121997 + 2.16667 NA intron (NM_198827, intron 20 of 24) MLT1K|LTR|ERVL-MaLR -43079 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 344.667-7 chr14 70202945 70203240 + 2.16667 NA intron (NR_135825, intron 2 of 3) L1M2|LINE|L1 -14022 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 448.667-4 chr16 84506410 84507195 + 2.16667 NA Intergenic AluSq2|SINE|Alu -2143 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 201.667-11 chr14 25904301 25904459 + 2.16667 NA Intergenic MamRep1527|LTR|LTR 649050 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 288.5-20 chr3 196941512 196941715 + 2.16667 NA intron (NR_046630, intron 2 of 2) L2b|LINE|L2 827 NM_001308036 22916 Hs.591671 NM_007362 ENSG00000114503 NCBP2 CBC2|CBP20|NIP1|PIG55 nuclear cap binding protein subunit 2 protein-coding 190-50 chr8 91455593 91455842 + 2.16667 NA Intergenic Intergenic 206398 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 437.167-5 chr3 134474008 134474365 + 2.16667 NA Intergenic Intergenic -11538 NM_001042384 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 342.334-3 chr11 135018263 135018440 + 2.16667 NA Intergenic L1ME1|LINE|L1 32999 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 364.833-5 chr8 85201126 85201393 + 2.16667 NA intron (NM_001083589, intron 1 of 7) intron (NM_001083589, intron 1 of 7) 13594 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 875.501-2 chr4 137861573 137862457 + 2.16667 NA Intergenic Intergenic -226999 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 483.167-2 chr17 74301110 74301549 + 2.16667 NA intron (NM_023036, intron 8 of 13) MER91B|DNA|hAT-Tip100 -24897 NM_153209 124602 Hs.372773 NM_153209 ENSG00000196169 KIF19 KIF19A kinesin family member 19 protein-coding 413.333-8 chr20 39677091 39677364 + 2.16667 NA Intergenic L2b|LINE|L2 -327234 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 212-14 chr11 61386662 61386904 + 2.16667 NA Intergenic AluSg4|SINE|Alu -5577 NM_001173991 51259 Hs.26745 NM_016499 ENSG00000187049 TMEM216 HSPC244 transmembrane protein 216 protein-coding 359.833-2 chr21 30446177 30446532 + 2.16667 NA Intergenic Intergenic 6075 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 323.666-3 chr12 25495446 25495864 + 2.16667 NA TTS (NM_001352232) TTS (NM_001352232) 57628 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 329.667-2 chr13 103271732 103271992 + 2.16667 NA Intergenic L1MB1|LINE|L1 -153338 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 1075.33 chr12 21169872 21170855 + 2.16667 NA intron (NM_006446, intron 2 of 14) L1MB2|LINE|L1 39169 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 476.334-5 chr6 45398510 45398921 + 2.16667 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) -20781 NM_001261823 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 346.167-13 chrX 38261926 38262292 + 2.16667 NA Intergenic Intergenic -41185 NM_001170750 8406 Hs.15154 NM_006307 ENSG00000101955 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi repeat containing protein X-linked protein-coding 459.501 chr14 65418504 65418829 + 2.16667 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) 5936 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 387.334 chr1 73004116 73004343 + 2.16667 NA Intergenic Intergenic -301941 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 359.5-8 chr7 79060349 79060601 + 2.16667 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 51487 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 479.334-3 chr2 40760177 40760581 + 2.16667 NA Intergenic Intergenic -247944 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 415.5-2 chr17 59367018 59367495 + 2.16667 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) 1173 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 222.333-31 chr8 78488855 78489012 + 2.16667 NA Intergenic L2c|LINE|L2 -27407 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 315.667-13 chr6 51655612 51655789 + 2.16667 NA intron (NM_138694, intron 61 of 66) MLT1E1|LTR|ERVL-MaLR 33830 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 191.5-22 chr17 59566130 59566427 + 2.16667 NA intron (NM_024612, intron 1 of 17) intron (NM_024612, intron 1 of 17) 668 NM_001166301 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 163.833-40 chr7 25262716 25262855 + 2.16667 NA Intergenic Intergenic -34299 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 342.333-2 chr1 181614228 181614568 + 2.16667 NA intron (NM_001205293, intron 6 of 47) Tigger2|DNA|TcMar-Tigger 130881 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 347.334-2 chr11 116641691 116641954 + 2.16667 NA intron (NR_135069, intron 1 of 2) intron (NR_135069, intron 1 of 2) 2400 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 355.167-2 chr15 44051661 44051835 + 2.16667 NA intron (NM_032892, intron 1 of 13) L1MC3|LINE|L1 142698 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 323-4 chr12 7390700 7390930 + 2.16667 NA intron (NM_001297650, intron 8 of 19) intron (NM_001297650, intron 8 of 19) 53370 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 379.167-8 chr3 18426188 18426454 + 2.16667 NA promoter-TSS (NM_002971) promoter-TSS (NM_002971) -982 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 554.333-2 chr7 2864987 2865409 + 2.16667 NA Intergenic Intergenic -20890 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 262-5 chr12 30657870 30658003 + 2.16667 NA intron (NM_006390, intron 16 of 24) L1ME4b|LINE|L1 19308 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 540.667-6 chr3 111860510 111860874 + 2.16667 NA intron (NM_001134439, intron 1 of 17) intron (NM_001134439, intron 1 of 17) 865 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 446.334-3 chr20 47503394 47503663 + 2.16667 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 1641 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 360.334-5 chr4 12357392 12357712 + 2.16667 NA Intergenic Intergenic 134101 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 233.5-17 chr2 147107568 147107796 + 2.16667 NA Intergenic LTR103b_Mam|LTR|ERV1? 520625 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 229.834-7 chr7 78074638 78074825 + 2.16667 NA intron (NM_001301128, intron 20 of 20) intron (NM_001301128, intron 20 of 20) 234601 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 308.167-16 chr7 21588975 21589167 + 2.16667 NA intron (NM_001277115, intron 11 of 81) intron (NM_001277115, intron 11 of 81) 46032 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 848.5 chr10 119686597 119687629 + 2.16667 NA Intergenic Intergenic 35743 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 507.167-6 chrX 81957834 81958137 + 2.16667 NA Intergenic Intergenic 755883 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 232.834-3 chr11 80514775 80514887 + 2.16667 NA Intergenic L1ME4a|LINE|L1 247972 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 335.334-3 chr10 97840130 97840435 + 2.16667 NA intron (NR_108035, intron 1 of 2) (AG)n|Simple_repeat|Simple_repeat 9516 NR_108035 100505561 Hs.351904 NR_108035 ENSG00000227356 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 410.667-9 chr7 813365 813641 + 2.16667 NA Intergenic CpG -2054 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 285.334-7 chr6 61943663 61944054 + 2.16667 NA intron (NR_146874, intron 4 of 13) L1MA4A|LINE|L1 342367 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 470.333-3 chr3 194593484 194593959 + 2.16667 NA intron (NM_138399, intron 9 of 10) intron (NM_138399, intron 9 of 10) 9453 NR_047575 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 805.666 chr4 103786014 103786496 + 2.16667 NA Intergenic HUERS-P3b-int|LTR|ERV1 -66270 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 369.167-8 chr5 56909925 56910493 + 2.16667 NA non-coding (NR_136557, exon 1 of 5) non-coding (NR_136557, exon 1 of 5) 147 NM_001323018 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 362-19 chr8 114200858 114201081 + 2.16667 NA Intergenic Charlie25|DNA|hAT-Charlie -764030 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 273.5 chr1 28676751 28676915 + 2.16667 NA intron (NM_024482, intron 1 of 9) AluSg4|SINE|Alu 8049 NM_006582 10691 Hs.632373 NM_006582 ENSG00000162419 GMEB1 P96PIF|PIF96 glucocorticoid modulatory element binding protein 1 protein-coding 414.001-5 chrX 43836631 43836961 + 2.16667 NA intron (NM_000898, intron 3 of 14) intron (NM_000898, intron 3 of 14) 45654 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 604.001 chr10 71696493 71697090 + 2.16667 NA intron (NM_022124, intron 21 of 67) intron (NM_022124, intron 21 of 67) 22987 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 437.667-7 chr9 37408576 37408949 + 2.16667 NA Intergenic MIRb|SINE|MIR -13934 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 267-27 chr6 51817243 51817386 + 2.16667 NA intron (NM_138694, intron 52 of 66) intron (NM_138694, intron 52 of 66) 195444 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 569.833 chr20 31833381 31834012 + 2.16667 NA intron (NM_033118, intron 12 of 12) intron (NM_033118, intron 12 of 12) 11908 NM_004118 2307 Hs.516971 NM_004118 ENSG00000179772 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 285.667-13 chr20 21223155 21223288 + 2.16667 NA intron (NM_018474, intron 9 of 12) intron (NM_018474, intron 9 of 12) -4932 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 316.334-12 chr7 41686367 41686758 + 2.16667 NA 3' UTR (NM_002192, exon 3 of 3) 3' UTR (NM_002192, exon 3 of 3) -7357 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 284.834-4 chr2 196674021 196674157 + 2.16667 NA intron (NM_001080539, intron 9 of 27) intron (NM_001080539, intron 9 of 27) 34374 NM_001080539 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 199.667-47 chr8 114124297 114124417 + 2.16667 NA Intergenic Intergenic -687418 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 650.167-2 chr16 10944149 10944524 + 2.16667 NA promoter-TSS (NM_001243403) promoter-TSS (NM_001243403) -152 NM_001243403 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 203.667-3 chr1 47554933 47555108 + 2.16667 NA Intergenic L3|LINE|CR1 -117703 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 388.334-5 chr14 60728884 60729190 + 2.16667 NA Intergenic L2b|LINE|L2 -4686 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 266.667-3 chr12 12766331 12766498 + 2.16667 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) 1765 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 697.501 chr6 40997343 40997949 + 2.16667 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 25634 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 342.167-6 chr22 39886217 39886417 + 2.16667 NA intron (NM_152512, intron 2 of 6) L1MC2|LINE|L1 7443 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 626.667-3 chr8 46917581 46918298 + 2.16667 NA Intergenic Intergenic 77053 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 657.501 chr14 22040204 22040837 + 2.16667 NA Intergenic Intergenic -369503 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 448.5-7 chr20 1764181 1764672 + 2.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 15320 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 1001.83-3 chrX 12701815 12702618 + 2.16667 NA intron (NM_001368400, intron 9 of 15) intron (NM_001368400, intron 9 of 15) -89139 NM_002765 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 323.833-5 chr20 38073399 38073927 + 2.16667 NA intron (NM_021215, intron 6 of 6) intron (NM_021215, intron 6 of 6) 39917 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 307.501 chr1 181916642 181916806 + 2.16667 NA Intergenic Intergenic 144988 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 761.668 chr1 226827833 226828487 + 2.16667 NA Intergenic Intergenic -42412 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 348.333-4 chr22 27100674 27100926 + 2.16667 NA Intergenic Intergenic -40282 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 350.167-3 chr10 97178178 97178495 + 2.16667 NA intron (NR_037909, intron 11 of 14) L1MC4|LINE|L1 7623 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 302.5 chr1 23528326 23528619 + 2.16667 NA TTS (NR_110799) TTS (NR_110799) 2761 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 398.5-2 chr11 125874494 125874988 + 2.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 -8873 NM_145014 219844 Hs.98133 NM_145014 ENSG00000198331 HYLS1 HLS HYLS1 centriolar and ciliogenesis associated protein-coding 351.667 chr1 37690340 37690692 + 2.16667 NA promoter-TSS (NM_001350755) promoter-TSS (NM_001350755) 13 NM_001303030 54955 Hs.272673 NM_017850 ENSG00000116922 C1orf109 - chromosome 1 open reading frame 109 protein-coding 292.334 chr14 64902210 64902383 + 2.16667 NA Intergenic Intergenic -12065 NM_001204063 91612 Hs.731537 NM_145165 ENSG00000258289 CHURC1 C14orf52|My015|chch churchill domain containing 1 protein-coding 864-3 chr8 4234096 4234746 + 2.16667 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 760493 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 424.167 chr12 50488823 50489186 + 2.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -15981 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 334.5-7 chr12 27940926 27941225 + 2.16667 NA Intergenic Intergenic 28901 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 472.334-2 chr7 88169893 88170249 + 2.16667 NA intron (NM_001324421, intron 25 of 28) intron (NM_001324421, intron 25 of 28) -46589 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 244.167-22 chr5 33413949 33414119 + 2.16667 NA Intergenic Intergenic -26662 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 421.5-2 chr16 88566308 88566753 + 2.16667 NA Intergenic MER66B|LTR|ERV1 -3873 NM_001294340 124245 Hs.93670 NM_144604 ENSG00000158545 ZC3H18 NHN1 zinc finger CCCH-type containing 18 protein-coding 455.167 chr10 71208911 71209494 + 2.16667 NA Intergenic Intergenic -3368 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 364 chr10 89251519 89252187 + 2.16667 NA promoter-TSS (NM_000235) promoter-TSS (NM_000235) -78 NM_001127605 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 292.667-22 chrX 62709288 62709588 + 2.16667 NA Intergenic HERVK11D-int|LTR|ERVK 641894 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 325.667 chr11 835025 835541 + 2.16667 NA intron (NM_004357, intron 2 of 8) intron (NM_004357, intron 2 of 8) 2331 NM_001039490 977 Hs.654379 NM_004357 ENSG00000177697 CD151 GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24 CD151 molecule (Raph blood group) protein-coding 248.667-27 chr4 75483532 75483870 + 2.16667 NA intron (NM_015436, intron 8 of 8) intron (NM_015436, intron 8 of 8) 25595 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 421.833 chr12 109805189 109805497 + 2.16667 NA intron (NM_001177431, intron 3 of 15) intron (NM_001177431, intron 3 of 15) 9453 NM_001177431 59341 Hs.506713 NM_021625 ENSG00000111199 TRPV4 BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel subfamily V member 4 protein-coding 165.667-11 chr10 100346988 100347078 + 2.16667 NA promoter-TSS (NM_005063) promoter-TSS (NM_005063) -200 NM_005063 6319 Hs.558396 NM_005063 ENSG00000099194 SCD FADS5|MSTP008|SCD1|SCDOS|hSCD1 stearoyl-CoA desaturase protein-coding 172.333-12 chr12 3458197 3458316 + 2.16667 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -32947 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 365.333-7 chr2 196337475 196337794 + 2.16667 NA intron (NM_020760, intron 3 of 28) (AATATAT)n|Simple_repeat|Simple_repeat 24543 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 520.667 chr12 116164860 116165236 + 2.16667 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) -16394 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 348.5-15 chr4 162169146 162169409 + 2.16667 NA Intergenic Intergenic -5243 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 370.167-9 chr5 51365120 51365524 + 2.16667 NA Intergenic Intergenic 18010 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 390.667-4 chr5 75704524 75704890 + 2.16667 NA intron (NM_152408, intron 3 of 10) MIR3|SINE|MIR 7748 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 550.5-2 chr12 15167039 15167311 + 2.16667 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 15252 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 269.334-3 chr1 200371220 200371371 + 2.16667 NA intron (NR_040064, intron 2 of 4) L1ME3Cz|LINE|L1 2497 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 533-5 chr6 159008447 159008798 + 2.16667 NA Intergenic L2a|LINE|L2 -8420 NM_031924 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 357.5-12 chr5 113865672 113865852 + 2.16667 NA Intergenic LTR33|LTR|ERVL 352068 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 373.834-4 chr5 79464894 79465482 + 2.16667 NA intron (NM_001277078, intron 1 of 5) AluJo|SINE|Alu 48648 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 219.5-5 chr10 43765789 43765962 + 2.16667 NA Intergenic L1PA16|LINE|L1 12950 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 354.667-14 chr5 98038619 98038919 + 2.16667 NA Intergenic L1ME3Cz|LINE|L1 122470 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 601.5-3 chr9 136400201 136400722 + 2.16667 NA Intergenic MIRb|SINE|MIR -2024 NM_003086 6621 Hs.113265 NM_003086 ENSG00000165684 SNAPC4 PTFalpha|SNAP190 small nuclear RNA activating complex polypeptide 4 protein-coding 581.5-3 chr4 48546555 48546929 + 2.16667 NA intron (NM_015030, intron 41 of 63) intron (NM_015030, intron 41 of 63) 56490 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 177.333-11 chr17 47810362 47810499 + 2.16667 NA intron (NM_145798, intron 18 of 22) intron (NM_145798, intron 18 of 22) 11364 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 666.001 chr20 35990972 35991572 + 2.16667 NA intron (NM_001365709, intron 7 of 11) MER63D|DNA|hAT-Blackjack 22682 NM_001304367 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 839.834 chr8 36858941 36859526 + 2.16667 NA intron (NM_001031836, intron 18 of 26) intron (NM_001031836, intron 18 of 26) 74859 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 852.834-2 chrX 74546349 74547135 + 2.16667 NA Intergenic Intergenic 67882 NM_183353 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 286-12 chr2 158179613 158179808 + 2.16667 NA intron (NM_138803, intron 11 of 13) intron (NM_138803, intron 11 of 13) 13060 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 321.501-2 chr15 39830550 39830824 + 2.16667 NA intron (NM_001271854, intron 1 of 3) intron (NM_001271854, intron 1 of 3) -1411 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 609.834 chr1 163409693 163410401 + 2.16667 NA Intergenic Intergenic 13144 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 355.5-2 chr12 57687510 57687756 + 2.16667 NA Intergenic AluJr|SINE|Alu -6322 NM_001261420 10956 Hs.527861 NM_006812 ENSG00000135506 OS9 ERLEC2|OS-9 OS9 endoplasmic reticulum lectin protein-coding 258.834-6 chr3 165206678 165206881 + 2.16667 NA promoter-TSS (NR_125764) promoter-TSS (NR_125764) -181 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 242.5-27 chr2 226093606 226093764 + 2.16667 NA Intergenic L1P4a|LINE|L1 -49109 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 533.333 chr4 63201458 63201916 + 2.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -1039922 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 535.501-3 chr2 222690378 222691060 + 2.16667 NA intron (NM_058165, intron 3 of 5) intron (NM_058165, intron 3 of 5) 19061 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 583.334 chr11 45332326 45332959 + 2.16667 NA Intergenic Intergenic -22729 NR_120558 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 563.667-2 chr6 124776689 124777062 + 2.16667 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -185670 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 438.001 chr11 10328589 10328872 + 2.16667 NA intron (NR_103765, intron 1 of 3) LTR88c|LTR|Gypsy? 20417 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 829.167 chr13 53782129 53783018 + 2.16667 NA Intergenic Intergenic -32846 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 645.667 chr12 68040294 68040967 + 2.16667 NA Intergenic Intergenic 51185 NR_104125 100885789 Hs.439832 NR_104124 ENSG00000255733 IFNG-AS1 GS1-410F4.2|NEST|Tmevpg1 IFNG antisense RNA 1 ncRNA 881-2 chr20 35883812 35884860 + 2.16667 NA intron (NM_016436, intron 9 of 17) intron (NM_016436, intron 9 of 17) 70290 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 465.167-4 chr19 43824840 43825078 + 2.16667 NA Intergenic L1PB1|LINE|L1 -2362 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 543.001-2 chr17 50139817 50140396 + 2.16667 NA exon (NM_032595, exon 5 of 10) exon (NM_032595, exon 5 of 10) -9946 NM_174920 201191 Hs.567769 NM_174920 ENSG00000167100 SAMD14 - sterile alpha motif domain containing 14 protein-coding 431.001-3 chr6 54841042 54841314 + 2.16667 NA Intergenic Intergenic -5593 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 608.334-3 chr15 88449967 88450624 + 2.16667 NA Intergenic Intergenic 17093 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 194.5-11 chr10 130478520 130478628 + 2.16667 NA Intergenic Intergenic 342165 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 437.001-2 chr2 149595565 149595806 + 2.16667 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -7910 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 349-7 chr11 34890318 34890639 + 2.16667 NA intron (NM_015957, intron 3 of 6) intron (NM_015957, intron 3 of 6) -25652 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 399.833-8 chr8 131996956 131997256 + 2.16667 NA intron (NM_015137, intron 19 of 22) intron (NM_015137, intron 19 of 22) 62276 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 407.167-6 chr3 181708706 181709075 + 2.16667 NA intron (NR_075089, intron 3 of 3) intron (NR_075089, intron 3 of 3) -3035 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 252.833 chr1 55665094 55665556 + 2.16667 NA Intergenic L1PB2|LINE|L1 279638 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 335.001-3 chr3 193873616 193873846 + 2.16667 NA Intergenic L2a|LINE|L2 -29722 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 393.167-10 chr9 124171767 124172151 + 2.16667 NA Intergenic L1MEg|LINE|L1 -85647 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 344.001-2 chr7 115098572 115098851 + 2.16667 NA intron (NR_120521, intron 1 of 3) (ATATTAG)n|Simple_repeat|Simple_repeat 19753 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 243.834-9 chr5 14447409 14447620 + 2.16667 NA intron (NM_007118, intron 34 of 56) intron (NM_007118, intron 34 of 56) -16469 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 1035-2 chr6 134063819 134064884 + 2.16667 NA Intergenic Intergenic -11727 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 376-13 chr9 133160767 133161190 + 2.16667 NA intron (NM_001288572, intron 3 of 6) AluSx1|SINE|Alu 2936 NM_001282632 26301 Hs.495419 NM_021996 ENSG00000148288 GBGT1 A3GALNT|FS|UNQ2513 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) protein-coding 531.167-4 chr8 91376432 91376711 + 2.16667 NA intron (NM_134266, intron 15 of 18) L1PA17|LINE|L1 127252 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 433.334-4 chr9 135085980 135086199 + 2.16667 NA intron (NM_014279, intron 1 of 5) intron (NM_014279, intron 1 of 5) -1171 NM_001282612 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 353-2 chr12 52582961 52583237 + 2.16667 NA Intergenic Intergenic -9256 NM_175053 121391 Hs.660125 NM_175053 ENSG00000170484 KRT74 ADWH|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4 keratin 74 protein-coding 508.334-3 chr12 95918153 95918640 + 2.16667 NA intron (NM_182496, intron 3 of 15) intron (NM_182496, intron 3 of 15) 24218 NM_182496 120935 Hs.210377 NM_182496 ENSG00000165972 CCDC38 - coiled-coil domain containing 38 protein-coding 407.001-4 chr18 581455 581805 + 2.16667 NA 3' UTR (NM_004066, exon 1 of 1) 3' UTR (NM_004066, exon 1 of 1) 1250 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 657.501-3 chr7 118918099 118918777 + 2.16667 NA Intergenic Intergenic 693734 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 701.334 chr2 206164217 206164677 + 2.16667 NA Intergenic Intergenic 2219 NR_002590 619569 Hs.742407 NR_002590 ENSG00000207406 SNORA41 ACA41|SNORA41A small nucleolar RNA, H/ACA box 41 snoRNA 194.667-4 chr1 156224090 156224229 + 2.16667 NA intron (NM_001199664, intron 1 of 4) L1MA6|LINE|L1 11171 NM_007221 11243 Hs.530479 NM_007221 ENSG00000160783 PMF1 - polyamine modulated factor 1 protein-coding 840.833-5 chr20 41693044 41693759 + 2.16667 NA Intergenic Intergenic -75024 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 458.667 chr4 53929738 53930162 + 2.16667 NA Intergenic Intergenic 57332 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 322.834-2 chr11 34493071 34493330 + 2.16667 NA intron (NM_001243081, intron 2 of 5) intron (NM_001243081, intron 2 of 5) 18524 NM_198381 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 519.334 chr14 29536159 29536501 + 2.16667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 390766 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 351.833-2 chr11 130132042 130132485 + 2.16667 NA intron (NR_024515, intron 8 of 13) intron (NR_024515, intron 8 of 13) -27519 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 465.501-4 chr17 52738393 52738692 + 2.16667 NA Intergenic Intergenic -123579 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 761.834 chr11 6250980 6251558 + 2.16667 NA Intergenic Intergenic -8569 NM_001363552 887 Hs.203 NM_176875 ENSG00000110148 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 647.667-2 chr8 120868810 120869235 + 2.16667 NA Intergenic MER57A1|LTR|ERV1 -56976 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 291.334-10 chr8 129857283 129857653 + 2.16667 NA intron (NM_001353282, intron 4 of 10) L2b|LINE|L2 -70844 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 257-14 chr17 63503175 63503342 + 2.16667 NA Intergenic LTR24C|LTR|ERV1 18412 NM_001178057 1636 Hs.298469 NM_000789 ENSG00000159640 ACE ACE1|CD143|DCP|DCP1 angiotensin I converting enzyme protein-coding 505.001-2 chr7 36370739 36371084 + 2.16667 NA intron (NM_001100425, intron 2 of 6) intron (NM_001100425, intron 2 of 6) -3671 NM_015314 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 657.001 chr1 160681395 160682110 + 2.16667 NA intron (NM_001778, intron 2 of 3) intron (NM_001778, intron 2 of 3) 30070 NM_001778 962 Hs.243564 NM_001778 ENSG00000117091 CD48 BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48 CD48 molecule protein-coding 467.334-2 chr7 48424765 48425061 + 2.16667 NA intron (NM_152701, intron 41 of 61) intron (NM_152701, intron 41 of 61) 253455 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 429.001 chr1 208093992 208094371 + 2.16667 NA intron (NM_025179, intron 8 of 31) intron (NM_025179, intron 8 of 31) 150203 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 239-23 chr3 6808196 6808399 + 2.16667 NA Intergenic Intergenic -2848 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 668.667-2 chr8 40524109 40524918 + 2.16667 NA Intergenic Intergenic -181150 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 264-6 chr10 69611478 69611636 + 2.16667 NA Intergenic L1MC3|LINE|L1 -18690 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 354.167-7 chr4 5790019 5790476 + 2.16667 NA intron (NM_001306090, intron 12 of 20) intron (NM_001306090, intron 12 of 20) 79046 NM_153717 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 214.333-6 chr10 82036607 82036811 + 2.16667 NA intron (NR_163253, intron 2 of 10) L1MB1|LINE|L1 159022 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 225.833-27 chr8 95627897 95628132 + 2.16667 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 320334 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 544.167-2 chr15 65296020 65296846 + 2.16667 NA TTS (NR_002756) TTS (NR_002756) 382 NR_002756 26831 NR_002756 ENSG00000199568 RNU5A-1 RNU5|RNU5A|RNU5C|U5A|U5B1 RNA, U5A small nuclear 1 snRNA 468.834-2 chr11 84138149 84138506 + 2.16667 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 134953 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 381-15 chr7 106947080 106947463 + 2.16667 NA Intergenic Intergenic 81792 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 170.334-4 chr20 45014616 45014763 + 2.16667 NA intron (NM_001352385, intron 9 of 11) intron (NM_001352385, intron 9 of 11) 48177 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 272.5-23 chr5 11404368 11404555 + 2.16667 NA intron (NM_001288715, intron 4 of 20) intron (NM_001288715, intron 4 of 20) 184456 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 932.668 chr1 25810799 25811429 + 2.16667 NA intron (NM_020451, intron 7 of 12) intron (NM_020451, intron 7 of 12) -8792 NM_001099627 56181 Hs.149305 NM_019557 ENSG00000117640 MTFR1L FAM54B|HYST1888|MST116|MSTP116 mitochondrial fission regulator 1 like protein-coding 214.667-19 chr2 88060492 88060615 + 2.16667 NA Intergenic Intergenic -4770 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 450.167-3 chr7 113403950 113404406 + 2.16667 NA Intergenic MIR|SINE|MIR -285596 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 255.5-30 chr5 106050869 106050992 + 2.16667 NA Intergenic Intergenic 951456 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 328.001-4 chr8 59527483 59527687 + 2.16667 NA Intergenic MIRb|SINE|MIR 408375 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 396.5-6 chr5 82465480 82465803 + 2.16667 NA Intergenic X7D_LINE|LINE|CR1 186179 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 778 chr11 78045913 78046544 + 2.16667 NA promoter-TSS (NM_001282406) promoter-TSS (NM_001282406) -37 NM_001282406 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 222.334 chr12 66066388 66066557 + 2.16667 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -35406 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 548.833-2 chr5 65483927 65484496 + 2.16667 NA Intergenic L1MC5|LINE|L1 -2291 NR_135689 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 222.333-29 chr6 63250562 63250829 + 2.16667 NA Intergenic Intergenic 69282 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 362.501-4 chr2 208371615 208371884 + 2.16667 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) 12057 NM_001309516 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 391.834-3 chr12 28409806 28410076 + 2.16667 NA intron (NM_001352082, intron 9 of 13) L1MEc|LINE|L1 -219203 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 347.333-13 chr3 183466129 183466440 + 2.16667 NA Intergenic Intergenic 12470 NR_145763 109617007 NR_145763 ENSG00000199363 SNORA63E - small nucleolar RNA, H/ACA box 63E snoRNA 321.667-3 chr14 47101214 47101393 + 2.16667 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 241943 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 383-6 chr3 183408689 183408971 + 2.16667 NA intron (NM_015078, intron 1 of 29) intron (NM_015078, intron 1 of 29) 19439 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 265.833-16 chr5 154007262 154007419 + 2.16667 NA intron (NM_001317993, intron 10 of 14) MIRc|SINE|MIR 31570 NM_001317993 10827 Hs.166551 NM_018691 ENSG00000055147 FAM114A2 133K02|C5orf3 family with sequence similarity 114 member A2 protein-coding 390.667 chr16 60391604 60392078 + 2.16667 NA Intergenic Intergenic -32048 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 197-33 chr7 38144766 38144879 + 2.16667 NA Intergenic L1M5|LINE|L1 -33423 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 383.334-4 chr4 125711724 125711959 + 2.16667 NA Intergenic Intergenic 204582 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 460.667-8 chr2 68362132 68362546 + 2.16667 NA Intergenic L2c|LINE|L2 -2943 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 381.5-7 chr20 56392372 56392624 + 2.16667 NA promoter-TSS (NM_001033522) promoter-TSS (NM_001033522) 127 NM_001033521 1477 Hs.172865 NM_001324 ENSG00000101138 CSTF1 CstF-50|CstFp50 cleavage stimulation factor subunit 1 protein-coding 276.334-7 chr2 153585982 153586178 + 2.16667 NA Intergenic L1PB4|LINE|L1 -107318 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 300.5-19 chr5 4593891 4594033 + 2.16667 NA Intergenic Intergenic -179519 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 524 chr1 97541176 97541599 + 2.16667 NA intron (NM_000110, intron 12 of 22) Tigger13a|DNA|TcMar-Tigger -255534 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 601.667-2 chr18 2533504 2534016 + 2.16667 NA Intergenic MIRb|SINE|MIR 37745 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 658.334-2 chr5 111685703 111686187 + 2.16667 NA intron (NR_040093, intron 2 of 6) MIR|SINE|MIR 70306 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 351.333-3 chr12 133075959 133076268 + 2.16667 NA Intergenic AluSz6|SINE|Alu -4090 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 307.334-5 chr22 27363062 27363330 + 2.16667 NA Intergenic L1MC1|LINE|L1 52545 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 409.833-3 chr11 108648208 108648721 + 2.16667 NA Intergenic L1M1|LINE|L1 -16605 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 342.834 chr1 63327103 63327801 + 2.16667 NA promoter-TSS (NR_106716) promoter-TSS (NR_106716) -468 NR_106716 102464823 NR_106716 ENSG00000275836 MIR6068 hsa-mir-6068 microRNA 6068 ncRNA 594.834-3 chr4 76180624 76181227 + 2.16667 NA intron (NM_005506, intron 3 of 11) intron (NM_005506, intron 3 of 11) -32410 NR_103781 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 364-11 chr3 192623601 192624152 + 2.16667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 103665 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 360.834-3 chr18 1838961 1839161 + 2.16667 NA Intergenic Intergenic -479432 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 276.334-8 chr20 42459594 42459831 + 2.16667 NA intron (NM_133170, intron 8 of 31) AluJb|SINE|Alu -225771 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 427.334 chr1 237863116 237863488 + 2.16667 NA intron (NR_027247, intron 2 of 11) MER3|DNA|hAT-Charlie 1127 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 283.667-9 chr4 187928979 187929264 + 2.16667 NA Intergenic L1PB1|LINE|L1 -66650 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 341.334-3 chr4 97721320 97721509 + 2.16667 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 354488 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 367.5-9 chr8 19371450 19371853 + 2.16667 NA intron (NR_156444, intron 7 of 8) L1MA4|LINE|L1 57675 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 529.834-3 chr6 20401481 20401876 + 2.16667 NA promoter-TSS (NM_001949) promoter-TSS (NM_001949) -201 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 1047.33 chr4 56799466 56800604 + 2.16667 NA Intergenic Intergenic 21438 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 313.667-12 chr4 45289866 45290142 + 2.16667 NA Intergenic L1PA13|LINE|L1 -563370 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 595.333-3 chr7 33050518 33051133 + 2.16667 NA intron (NM_001002009, intron 1 of 9) intron (NM_001002009, intron 1 of 9) -9660 NM_001166118 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 238.833-6 chr12 7832227 7832402 + 2.16667 NA intron (NM_001286234, intron 3 of 10) intron (NM_001286234, intron 3 of 10) 40601 NM_001286233 144195 Hs.655169 NM_153449 ENSG00000173262 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 member 14 protein-coding 541.334-2 chr8 28324189 28324546 + 2.16667 NA intron (NM_006228, intron 1 of 3) intron (NM_006228, intron 1 of 3) 7099 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 465.501-2 chr10 91758496 91758798 + 2.16667 NA Intergenic Intergenic 39549 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 703.667-2 chr3 178436586 178437226 + 2.16667 NA intron (NR_046786, intron 1 of 2) intron (NR_046786, intron 1 of 2) 17705 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 284.833-16 chr8 47707463 47707776 + 2.16667 NA intron (NM_001080394, intron 14 of 19) L1MD2|LINE|L1 30545 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 295.833-8 chr7 78326465 78326874 + 2.16667 NA intron (NM_001301128, intron 9 of 20) LTR78B|LTR|ERV1 -20573 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 208.667-48 chr9 10232497 10232604 + 2.16667 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 380452 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 389.001-3 chr9 133782090 133782582 + 2.16667 NA intron (NM_001134398, intron 19 of 29) intron (NM_001134398, intron 19 of 29) -42381 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 306.334-8 chr14 105045835 105046151 + 2.16667 NA Intergenic Intergenic 19437 NM_001278695 29933 Hs.532504 NM_013345 ENSG00000183484 GPR132 G2A G protein-coupled receptor 132 protein-coding 258-39 chr8 133531091 133531222 + 2.16667 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 40731 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 202-2 chr1 106217949 106218060 + 2.16667 NA Intergenic L1ME2|LINE|L1 -189751 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 722.001-2 chr12 26096771 26097699 + 2.16667 NA Intergenic Intergenic 27802 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 755.501 chr11 17864336 17865012 + 2.16667 NA intron (NR_104040, intron 11 of 11) intron (NR_104040, intron 11 of 11) 128726 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 221.167-23 chr5 106117097 106117290 + 2.16667 NA Intergenic MER57-int|LTR|ERV1 893821 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 383.167-3 chr1 151735127 151735492 + 2.16667 NA Intergenic Intergenic 13787 NM_001144956 284485 Hs.297967 NM_001144956 ENSG00000178796 RIIAD1 C1orf230|NCRNA00166 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding 410.167 chr1 11642127 11642646 + 2.16667 NA Intergenic Intergenic -12021 NM_001304791 93611 Hs.556006 NM_033182 ENSG00000132879 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 457.334-3 chr3 107064549 107065080 + 2.16667 NA Intergenic Intergenic 175824 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 388.334-4 chr13 89174390 89174699 + 2.16667 NA Intergenic L1MC4a|LINE|L1 -60747 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 252.167 chr1 25837062 25837587 + 2.16667 NA intron (NM_024037, intron 2 of 2) intron (NM_024037, intron 2 of 2) -13718 NR_024498 646471 Hs.727271 NR_024498 LOC646471 - uncharacterized LOC646471 ncRNA 428.667-4 chr22 49053536 49054027 + 2.16667 NA Intergenic Cheshire|DNA|hAT-Charlie 187011 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 446.834-4 chr5 113581842 113582153 + 2.16667 NA intron (NM_001345975, intron 24 of 28) intron (NM_001345975, intron 24 of 28) 68303 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 222.333-17 chr2 76631719 76631929 + 2.16667 NA Intergenic L1MCb|LINE|L1 -354141 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 415.334-5 chr19 34336998 34337369 + 2.16667 NA intron (NM_014686, intron 8 of 13) L2a|LINE|L2 -27557 NM_001184722 2821 Hs.466471 NM_000175 ENSG00000105220 GPI AMF|GNPI|NLK|PGI|PHI|SA-36|SA36 glucose-6-phosphate isomerase protein-coding 322.334-5 chr2 74835299 74835509 + 2.16667 NA intron (NM_000189, intron 1 of 17) CpG 2749 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 279.667-9 chr18 8057174 8057377 + 2.16667 NA intron (NM_002845, intron 7 of 30) L1ME3Cz|LINE|L1 309759 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 392.834-3 chr2 176033075 176033340 + 2.16667 NA Intergenic Intergenic -30387 NR_130941 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 223.5-24 chr6 154788321 154788527 + 2.16667 NA intron (NM_014892, intron 4 of 19) Tigger3a|DNA|TcMar-Tigger 55046 NM_001286188 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 296.334-4 chr12 48351196 48351677 + 2.16667 NA promoter-TSS (NM_152320) promoter-TSS (NM_152320) -190 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 440.167-2 chr1 228724679 228725012 + 2.16667 NA intron (NR_037962, intron 1 of 2) intron (NR_037962, intron 1 of 2) -10634 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 541.166-2 chr2 18294989 18295435 + 2.16667 NA Intergenic (ATAATAT)n|Simple_repeat|Simple_repeat 265441 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 253.667-39 chr7 136115200 136115386 + 2.16667 NA Intergenic L1PA7|LINE|L1 -137934 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 523.501-2 chr8 123647291 123647649 + 2.16667 NA intron (NM_001081675, intron 2 of 3) intron (NM_001081675, intron 2 of 3) 6331 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 587.168 chr6 33745946 33746524 + 2.16667 NA intron (NM_001142883, intron 1 of 6) intron (NM_001142883, intron 1 of 6) 670 NM_054111 117283 Hs.17253 NM_054111 ENSG00000161896 IP6K3 IHPK3|INSP6K3 inositol hexakisphosphate kinase 3 protein-coding 531.667 chr1 31170851 31171277 + 2.16667 NA Intergenic Intergenic 68823 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 436.333-5 chr5 60959125 60959691 + 2.16667 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 14203 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 792.168 chr16 30526814 30527575 + 2.16667 NA promoter-TSS (NM_024671) promoter-TSS (NM_024671) -628 NM_024671 79724 Hs.85658 NM_024671 ENSG00000169957 ZNF768 - zinc finger protein 768 protein-coding 1038.17 chr6 100657566 100658373 + 2.16667 NA intron (NM_006828, intron 16 of 41) intron (NM_006828, intron 16 of 41) -194294 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 296.333-7 chr20 36138751 36139056 + 2.16667 NA intron (NM_001258330, intron 3 of 20) intron (NM_001258330, intron 3 of 20) -15837 NM_012156 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 552.834-2 chr12 116235963 116236406 + 2.16667 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 41002 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 288.167-19 chr8 79637438 79637599 + 2.16667 NA intron (NM_007029, intron 2 of 4) MIR|SINE|MIR 26401 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 454.001 chr17 18260601 18260888 + 2.16667 NA promoter-TSS (NM_001144900) promoter-TSS (NM_001144900) 82 NM_139162 125170 Hs.655555 NM_139162 ENSG00000177427 MIEF2 MID49|SMCR7 mitochondrial elongation factor 2 protein-coding 522.167-2 chr1 194082357 194082785 + 2.16667 NA Intergenic L2|LINE|L2 777826 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 427.834 chr1 51742796 51743022 + 2.16667 NA intron (NM_001350209, intron 4 of 23) CR1-L3B_Croc|LINE|CR1 13059 NM_001350210 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 461.167-4 chr5 57694209 57694558 + 2.16667 NA Intergenic Intergenic 43723 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 656.833 chr11 17598750 17599360 + 2.16667 NA intron (NM_001277269, intron 29 of 54) intron (NM_001277269, intron 29 of 54) 51682 NM_001292063 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 343.333-11 chr4 62643240 62643429 + 2.16667 NA Intergenic Intergenic -481569 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 604 chr2 120312715 120313385 + 2.16667 NA Intergenic Intergenic -33086 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin subunit beta B protein-coding 437.001 chr1 62070202 62070955 + 2.16667 NA intron (NM_001350145, intron 31 of 43) intron (NM_001350145, intron 31 of 43) -8208 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 338.834-3 chr6 34718268 34718529 + 2.16667 NA Intergenic L1ME3Cz|LINE|L1 21453 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 247-25 chr4 62099365 62099597 + 2.16667 NA intron (NR_110595, intron 6 of 7) L1MC5|LINE|L1 62284 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 192.833-25 chr4 6273340 6273508 + 2.16667 NA intron (NM_001145853, intron 1 of 7) intron (NM_001145853, intron 1 of 7) 3574 NM_006005 7466 Hs.518602 NM_006005 ENSG00000109501 WFS1 CTRCT41|WFRS|WFS|WFSL wolframin ER transmembrane glycoprotein protein-coding 188.334-8 chr5 149426873 149427161 + 2.16667 NA intron (NR_105060, intron 3 of 4) FLAM_C|SINE|Alu -1901 NR_029684 406935 NR_029684 ENSG00000284182 MIR143 MIRN143|mir-143 microRNA 143 ncRNA 308.5-26 chr8 27621875 27622171 + 2.16667 NA Intergenic L1M5|LINE|L1 -7323 NM_001831 1191 Hs.436657 NM_001831 ENSG00000120885 CLU AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 clusterin protein-coding 377.499 chr1 163171009 163171321 + 2.16667 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) 9490 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 336.333-2 chr1 204763896 204764264 + 2.16667 NA Intergenic Intergenic -64572 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 278-18 chr2 207587406 207587580 + 2.16667 NA intron (NM_001330133, intron 3 of 3) L1MA5|LINE|L1 28371 NM_001371428 651.501 chr18 31740981 31741692 + 2.16667 NA Intergenic Intergenic 19544 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 416.167-3 chr20 4563480 4563820 + 2.16667 NA Intergenic Intergenic -122806 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 462.334 chr1 73231922 73232151 + 2.16667 NA Intergenic L1ME2z|LINE|L1 -74134 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 370.167-8 chr4 68248201 68248498 + 2.16667 NA Intergenic L1M5|LINE|L1 -2655 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 709.001 chr22 34723315 34723734 + 2.16667 NA Intergenic Intergenic 274392 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 831.333-2 chr7 31134184 31135040 + 2.16667 NA Intergenic Intergenic 82151 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 449.667 chr14 36941218 36941620 + 2.16667 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) 10972 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 256.5-24 chr8 82566627 82566831 + 2.16667 NA Intergenic MER2|DNA|TcMar-Tigger -345375 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 334.834-3 chr19 10119947 10120259 + 2.16667 NA promoter-TSS (NM_003755) promoter-TSS (NM_003755) -204 NM_003755 8666 Hs.529059 NM_003755 ENSG00000130811 EIF3G EIF3-P42|EIF3S4|eIF3-delta|eIF3-p44 eukaryotic translation initiation factor 3 subunit G protein-coding 448.833-4 chr6 64910324 64910658 + 2.16667 NA intron (NM_001292009, intron 16 of 43) intron (NM_001292009, intron 16 of 43) -390927 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 361.5-5 chr15 34000385 34000607 + 2.16667 NA intron (NM_001320917, intron 1 of 1) L1ME3G|LINE|L1 31999 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 504-4 chr8 41528792 41529303 + 2.16667 NA promoter-TSS (NM_032336) promoter-TSS (NM_032336) -214 NM_032336 84296 Hs.656996 NM_032336 ENSG00000147536 GINS4 SLD5 GINS complex subunit 4 protein-coding 359.334-4 chr2 43627668 43627884 + 2.16667 NA Intergenic L1MB8|LINE|L1 -9484 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 348.334-4 chr2 39264937 39265238 + 2.16667 NA intron (NM_003618, intron 28 of 33) intron (NM_003618, intron 28 of 33) -21104 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 433.833-2 chr10 18785073 18785391 + 2.16667 NA Intergenic Intergenic 125801 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 445.333-4 chr12 130747034 130747342 + 2.16667 NA Intergenic MIRb|SINE|MIR -30883 NM_001351233 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 618.834 chr12 40671735 40672208 + 2.16667 NA Intergenic Intergenic -20468 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 489.334-3 chr22 36576911 36577265 + 2.16667 NA intron (NM_006078, intron 2 of 3) MIR|SINE|MIR -47922 NR_156418 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 447.667-5 chr17 70527242 70527824 + 2.16667 NA Intergenic Intergenic 357998 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 353.167-4 chr18 24600011 24600198 + 2.16667 NA Intergenic Intergenic -28078 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LINC01915 - long intergenic non-protein coding RNA 1915 ncRNA 354.5-3 chr12 71195583 71195757 + 2.16667 NA Intergenic Intergenic -37671 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 489.5-4 chr8 104220997 104221327 + 2.16667 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -2173 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 790.834 chr3 86701959 86702777 + 2.16667 NA Intergenic Intergenic 220425 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 372.5 chr1 88180683 88180934 + 2.16667 NA Intergenic Intergenic -503336 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 818.334 chr1 154326120 154326760 + 2.16667 NA intron (NM_001370597, intron 1 of 27) intron (NM_001370597, intron 1 of 27) 880 NM_001005855 57198 Hs.435700 NM_020452 ENSG00000143515 ATP8B2 ATPID ATPase phospholipid transporting 8B2 protein-coding 255.833-11 chr17 76713385 76713591 + 2.16667 NA 3' UTR (NM_001081461, exon 7 of 7) 3' UTR (NM_001081461, exon 7 of 7) -2523 NM_001008528 439921 Hs.250723 NM_198530 ENSG00000182534 MXRA7 - matrix remodeling associated 7 protein-coding 473.834-5 chr4 112762665 112762946 + 2.16667 NA intron (NM_001354269, intron 1 of 43) AluSx|SINE|Alu -55192 NM_001354254 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 394.167-2 chr1 114600405 114600735 + 2.16667 NA intron (NM_001256404, intron 14 of 20) intron (NM_001256404, intron 14 of 20) -18955 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 570.167 chr15 78302483 78302916 + 2.16667 NA Intergenic MER112|DNA|hAT-Charlie -3090 NM_001303248 80349 Hs.513055 NM_025234 ENSG00000140395 WDR61 REC14|SKI8 WD repeat domain 61 protein-coding 300.334-7 chr9 14591681 14591833 + 2.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie -59680 NM_001369458 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 347.333-2 chr1 208730513 208730700 + 2.16667 NA intron (NR_146914, intron 3 of 3) intron (NR_146914, intron 3 of 3) 1918 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 1006.67 chr4 69778118 69779145 + 2.16667 NA Intergenic L1MC1|LINE|L1 -18011 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 204.5-15 chr17 27333209 27333334 + 2.16667 NA Intergenic Intergenic 39157 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 382.166-2 chr2 199302217 199302467 + 2.16667 NA intron (NM_001172509, intron 10 of 10) intron (NM_001172509, intron 10 of 10) 155597 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 795.667 chr19 1812394 1813200 + 2.16667 NA promoter-TSS (NM_138813) promoter-TSS (NM_138813) -521 NM_138813 148229 Hs.306212 NM_138813 ENSG00000130270 ATP8B3 ATPIK ATPase phospholipid transporting 8B3 protein-coding 456.667-2 chr2 58364784 58365023 + 2.16667 NA Intergenic Intergenic 89026 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 573.501-2 chr3 42744217 42744519 + 2.16667 NA intron (NR_046732, intron 3 of 3) intron (NR_046732, intron 3 of 3) 11793 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 530.999 chr1 218579803 218580175 + 2.16667 NA intron (NR_031644, intron 2 of 6) L1ME2|LINE|L1 69894 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 295.666-7 chr12 67811254 67811553 + 2.16667 NA Intergenic Intergenic -81928 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 210-13 chr14 42953670 42953838 + 2.16667 NA Intergenic L2|LINE|L2 1346898 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 475.834 chr5 141412548 141412887 + 2.16667 NA promoter-TSS (NM_018913) promoter-TSS (NM_018913) -459 NM_032090 56106 Hs.368160 NM_018913 ENSG00000253846 PCDHGA10 PCDH-GAMMA-A10 protocadherin gamma subfamily A, 10 protein-coding 667.167 chr6 63307768 63308259 + 2.16667 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 11964 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 442.001-2 chr18 12921365 12921653 + 2.16667 NA Intergenic Intergenic -26475 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 245.333-25 chr6 50362827 50363023 + 2.16667 NA Intergenic ERVL-E-int|LTR|ERVL -312996 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 302.834-2 chr10 65513463 65513641 + 2.16667 NA Intergenic L1MA3|LINE|L1 -57873 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 485-9 chr8 19385764 19386076 + 2.16667 NA intron (NM_001363110, intron 7 of 8) intron (NM_001363110, intron 7 of 8) 71944 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 682.333 chr8 66688774 66689381 + 2.16667 NA intron (NM_001204173, intron 2 of 18) intron (NM_001204173, intron 2 of 18) 21481 NM_001204173 100533105 NM_001204173 ENSG00000104205 C8orf44-SGK3 - C8orf44-SGK3 readthrough protein-coding 268.5-11 chr13 23889360 23889594 + 2.16667 NA promoter-TSS (NM_001135816) promoter-TSS (NM_001135816) 11 NM_001135816 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 283.833-11 chr22 35045041 35045379 + 2.16667 NA Intergenic Intergenic -20948 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 475.667-3 chr14 61229072 61229331 + 2.16667 NA Intergenic Intergenic 52137 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 619.334-2 chr4 90314890 90315323 + 2.16667 NA intron (NM_207491, intron 3 of 7) AluSx1|SINE|Alu 80075 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 314.834-4 chr7 86026346 86026500 + 2.16667 NA Intergenic MER101B|LTR|ERV1 605301 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 673.334-3 chr16 84725964 84726642 + 2.16667 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 26303 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 623.999 chr5 60650359 60650988 + 2.16667 NA intron (NM_001145208, intron 2 of 9) L1M5|LINE|L1 49493 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 295.167-8 chr14 58046908 58047103 + 2.16667 NA intron (NM_001001872, intron 5 of 7) Charlie29a|DNA|hAT-Charlie 105208 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 363.833-6 chr5 8452829 8453122 + 2.16667 NA intron (NR_039984, intron 1 of 5) intron (NR_039984, intron 1 of 5) 4589 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 376.501 chr15 86519241 86519453 + 2.16667 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -202379 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 456.001-2 chr17 7833920 7834404 + 2.16667 NA TTS (NM_020877) TTS (NM_020877) -5744 NM_001348716 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 364.5-7 chr2 136932489 136932882 + 2.16667 NA intron (NM_001316349, intron 2 of 27) Tigger2a|DNA|TcMar-Tigger 167140 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 401.667-3 chr10 126827649 126827918 + 2.16667 NA Intergenic L1MA5A|LINE|L1 -77626 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 430.668 chr2 184047529 184047871 + 2.16667 NA Intergenic LTR37-int|LTR|ERV1 -331275 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 184.334-6 chr7 25849024 25849155 + 2.16667 NA Intergenic MER33|DNA|hAT-Charlie -58970 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 443.167 chr16 83111878 83112270 + 2.16667 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -121776 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 430.667-2 chr18 47099981 47100375 + 2.16667 NA intron (NM_001367621, intron 14 of 15) intron (NM_001367621, intron 14 of 15) 50322 NM_032124 84064 Hs.465041 NM_032124 ENSG00000167220 HDHD2 3110052N05Rik|HEL-S-301 haloacid dehalogenase like hydrolase domain containing 2 protein-coding 433.5-4 chr1 220325214 220325568 + 2.16667 NA Intergenic Intergenic -52938 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 404.833-6 chr5 101260055 101260389 + 2.16667 NA Intergenic L1MC4a|LINE|L1 -356940 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 369-8 chr22 25773867 25774265 + 2.16667 NA intron (NM_001318245, intron 7 of 43) intron (NM_001318245, intron 7 of 43) 31878 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 304.334-11 chr5 136686453 136686655 + 2.16667 NA Intergenic L1PA15-16|LINE|L1 -321078 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 405.167-2 chr16 24010633 24010898 + 2.16667 NA intron (NM_002738, intron 3 of 16) intron (NM_002738, intron 3 of 16) 174782 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 466.666 chr3 96544289 96544631 + 2.16667 NA Intergenic Intergenic 184496 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 244.334-13 chr8 17782306 17782525 + 2.16667 NA intron (NM_001363061, intron 1 of 14) intron (NM_001363061, intron 1 of 14) 18502 NM_001001924 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 295.834-5 chr21 29083353 29083513 + 2.16667 NA intron (NM_001371374, intron 2 of 11) L4_A_Mam|LINE|RTE-X 6319 NM_001286623 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 340.833 chr13 92943459 92943868 + 2.16667 NA Intergenic Intergenic -101678 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 717.834 chr5 18393826 18394739 + 2.16667 NA Intergenic HERVL40-int|LTR|ERVL 587008 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 587.333 chr5 116289156 116289688 + 2.16667 NA intron (NM_001308080, intron 5 of 6) L1M4c|LINE|L1 33679 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 848.502 chrX 102494503 102495070 + 2.16667 NA Intergenic MER76-int|LTR|ERVL 21953 NM_021992 11013 Hs.56145 NM_021992 ENSG00000158164 TMSB15A TMSB15|TMSB15B|TMSL8|TMSNB|Tb15|TbNB thymosin beta 15a protein-coding 772.834 chr10 51389101 51389956 + 2.16667 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 89955 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 469.834-3 chr6 2739659 2740123 + 2.16667 NA intron (NM_001012418, intron 2 of 12) MIRc|SINE|MIR 11031 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 415.667-4 chr18 34153026 34153336 + 2.16667 NA intron (NM_001353232, intron 1 of 9) L1M5|LINE|L1 69289 NM_001282527 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 584.334-3 chr5 152315435 152315844 + 2.16667 NA Intergenic MIR3|SINE|MIR 89640 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 561.167-3 chr12 81677644 81678137 + 2.16667 NA intron (NM_003625, intron 3 of 32) Charlie8|DNA|hAT-Charlie -79519 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 362.667-4 chr14 74946324 74946769 + 2.16667 NA intron (NM_001293643, intron 4 of 6) intron (NM_001293643, intron 4 of 6) 9218 NM_001293643 5228 Hs.252820 NM_002632 ENSG00000119630 PGF D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760 placental growth factor protein-coding 280.167-15 chr8 134215881 134216031 + 2.16667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 329460 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 257.167-8 chr3 81581450 81581639 + 2.16667 NA intron (NM_000158, intron 10 of 15) intron (NM_000158, intron 10 of 15) 180101 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 451.667 chr10 23530224 23530576 + 2.16667 NA Intergenic (AATTATA)n|Simple_repeat|Simple_repeat 91131 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 400.334-6 chrX 94058752 94059182 + 2.16667 NA Intergenic Intergenic 384761 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 642.167 chr16 76935317 76935812 + 2.16667 NA Intergenic (ATATAAC)n|Simple_repeat|Simple_repeat 66628 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 636.334 chr17 39753823 39754638 + 2.16667 NA Intergenic CpG 14263 NM_001242443 2886 Hs.86859 NM_005310 ENSG00000141738 GRB7 - growth factor receptor bound protein 7 protein-coding 784.5 chr1 220733078 220733867 + 2.16667 NA Intergenic MER102c|DNA|hAT-Charlie -14850 NM_001331042 54996 Hs.369042 NM_017898 ENSG00000117791 MARC2 MOSC2 mitochondrial amidoxime reducing component 2 protein-coding 408.333-2 chr2 45421783 45422168 + 2.16667 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) -167034 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 1151.17 chr11 15649536 15650630 + 2.16667 NA intron (NM_001293172, intron 1 of 2) intron (NM_001293172, intron 1 of 2) 6198 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 232.334-10 chr21 19325897 19326037 + 2.16667 NA Intergenic Intergenic -566155 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 341.167-2 chr1 168470637 168470881 + 2.16667 NA intron (NR_125956, intron 4 of 4) intron (NR_125956, intron 4 of 4) 24885 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 696 chr1 98054075 98054617 + 2.16667 NA Intergenic CpG -4653 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 381.166 chr14 100285585 100285879 + 2.16667 NA Intergenic CpG 8375 NR_106822 102466730 NR_106822 ENSG00000283840 MIR6764 hsa-mir-6764 microRNA 6764 ncRNA 348.167-15 chr8 131610249 131610545 + 2.16667 NA Intergenic L1ME3G|LINE|L1 -293696 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 446.834 chr12 6272649 6272914 + 2.16667 NA Intergenic L2b|LINE|L2 -37655 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 614.167-3 chr20 44214834 44215479 + 2.16667 NA intron (NR_038337, intron 2 of 2) intron (NR_038337, intron 2 of 2) 4070 NR_038337 100505783 Hs.159049 NR_038337 ENSG00000223891 OSER1-DT OSER1-AS1 OSER1 divergent transcript ncRNA 1006.17 chr19 8654355 8654998 + 2.16667 NA Intergenic Intergenic -43961 NM_030957 81794 Hs.657508 NM_030957 ENSG00000142303 ADAMTS10 ADAM-TS10|ADAMTS-10|WMS|WMS1 ADAM metallopeptidase with thrombospondin type 1 motif 10 protein-coding 253.334-4 chr12 24734996 24735121 + 2.16667 NA Intergenic Intergenic -150890 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 305.834-6 chr2 209953540 209953795 + 2.16667 NA intron (NM_032504, intron 46 of 63) intron (NM_032504, intron 46 of 63) -48898 NM_001278289 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 223.833-4 chr11 65122154 65122342 + 2.16667 NA promoter-TSS (NR_037567) promoter-TSS (NR_037567) 4 NR_037568 740 Hs.744882 NM_004927 ENSG00000149792 MRPL49 C11orf4|L49mt|MRP-L49|NOF|NOF1 mitochondrial ribosomal protein L49 protein-coding 248.833-5 chr1 189084420 189084638 + 2.16667 NA Intergenic Intergenic 1391481 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 276.833-9 chr2 71498304 71498613 + 2.16667 NA intron (NM_001130985, intron 3 of 54) LTR8|LTR|ERV1 31759 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 188.834-12 chr6 103171862 103171987 + 2.16667 NA Intergenic Intergenic 1687622 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 321.167-7 chr13 58162103 58162348 + 2.16667 NA Intergenic L1MC3|LINE|L1 -3602 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 290.667-19 chr7 46764279 46764616 + 2.16667 NA Intergenic MER89|LTR|ERV1 -67325 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 295.334-7 chr2 162185321 162185714 + 2.16667 NA intron (NM_004460, intron 20 of 25) intron (NM_004460, intron 20 of 25) -33270 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 558.999 chr1 26417003 26417447 + 2.16667 NA intron (NM_024674, intron 2 of 3) intron (NM_024674, intron 2 of 3) 6408 NM_024674 79727 Hs.86154 NM_024674 ENSG00000131914 LIN28A CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A lin-28 homolog A protein-coding 398.833-6 chr2 187442202 187442763 + 2.16667 NA intron (NM_001369435, intron 1 of 15) intron (NM_001369435, intron 1 of 15) 5770 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 449.834-2 chr6 49850359 49850592 + 2.16667 NA intron (NM_170609, intron 3 of 6) intron (NM_170609, intron 3 of 6) 16060 NM_001131 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 533.667-3 chr6 105424119 105424710 + 2.16667 NA Intergenic Intergenic -21332 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 662.5 chr11 111428907 111429680 + 2.16667 NA Intergenic LTR41B|LTR|ERVL -11107 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 214-37 chr3 58491827 58492059 + 2.16667 NA promoter-TSS (NM_001128214) promoter-TSS (NM_001128214) -153 NM_001128214 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 440.667-2 chr11 74449317 74449749 + 2.16667 NA Intergenic Intergenic 18022 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 424-3 chr19 36674937 36675236 + 2.16667 NA Intergenic Intergenic -8249 NM_153257 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 286-5 chr14 88428653 88428943 + 2.16667 NA intron (NM_001040428, intron 6 of 10) intron (NM_001040428, intron 6 of 10) 43141 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 608.5 chr17 7004684 7005211 + 2.16667 NA intron (NM_000697, intron 8 of 13) MIR|SINE|MIR 7387 NR_040089 100506713 Hs.422967 NR_040089 ENSG00000215067 ALOX12-AS1 - ALOX12 antisense RNA 1 ncRNA 307-10 chr21 36125450 36125678 + 2.16667 NA intron (NR_040084, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 1076 NR_040084 100133286 Hs.728809 NR_040084 ENSG00000230212 LOC100133286 - uncharacterized LOC100133286 ncRNA 416.334-2 chr22 25677588 25677904 + 2.16667 NA intron (NM_001362778, intron 7 of 19) intron (NM_001362778, intron 7 of 19) -64442 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 460.167-2 chr2 86450826 86451459 + 2.16667 NA exon (NM_001146688, exon 4 of 26) exon (NM_001146688, exon 4 of 26) 9681 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 600.834 chr18 34809718 34810464 + 2.16667 NA intron (NM_001198945, intron 6 of 10) intron (NM_001198945, intron 6 of 10) -7871 NM_001198943 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 461.001 chr1 15595038 15595303 + 2.16667 NA Intergenic (AATAA)n|Simple_repeat|Simple_repeat -10119 NM_024758 79814 Hs.461532 NM_024758 ENSG00000116771 AGMAT - agmatinase protein-coding 522.001-3 chr6 134035637 134036051 + 2.16667 NA intron (NM_145176, intron 1 of 4) intron (NM_145176, intron 1 of 4) 16780 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 347.833 chr1 70645085 70645317 + 2.16667 NA Intergenic Intergenic -61252 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 903.667 chr19 506888 507918 + 2.16667 NA promoter-TSS (NM_033513) promoter-TSS (NM_033513) -94 NM_033513 91978 Hs.369613 NM_033513 ENSG00000141933 TPGS1 C19orf20|GTRGEO22|PGs1 tubulin polyglutamylase complex subunit 1 protein-coding 881.167-2 chr11 120168746 120169790 + 2.16667 NA intron (NR_159965, intron 1 of 1) CpG 291 NR_159965 107984399 Hs.638417 NR_159965 LOC107984399 - uncharacterized LOC107984399 ncRNA 414.834 chr1 85570947 85571244 + 2.16667 NA intron (NM_001134445, intron 1 of 6) MIRb|SINE|MIR 7105 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 371-14 chr7 38747210 38747420 + 2.16667 NA intron (NM_014396, intron 22 of 28) intron (NM_014396, intron 22 of 28) -60226 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 283.834-11 chr9 30874291 30874427 + 2.16667 NA Intergenic L1MEc|LINE|L1 -465905 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 350-6 chr13 21511144 21511395 + 2.16667 NA intron (NM_152726, intron 7 of 11) HAL1b|LINE|L1 -51899 NM_001286638 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 306.834-3 chr16 47220163 47220481 + 2.16667 NA intron (NM_030790, intron 13 of 17) Charlie1a|DNA|hAT-Charlie 76254 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 400.667-7 chr20 57435460 57435969 + 2.16667 NA Intergenic Intergenic -42658 NR_149006 100291105 Hs.638423 NR_149006 ENSG00000218018 LOC100291105 - uncharacterized LOC100291105 ncRNA 444.5-5 chr20 2470842 2471252 + 2.16667 NA promoter-TSS (NM_198216) promoter-TSS (NM_198216) -258 NM_003091 6628 Hs.83753 NM_003091 ENSG00000125835 SNRPB CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B small nuclear ribonucleoprotein polypeptides B and B1 protein-coding 425.5-8 chr8 105726347 105726699 + 2.16667 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 333980 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 432.834-5 chr22 31375308 31375517 + 2.16667 NA Intergenic L1M4a1|LINE|L1 -24192 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 529.5-3 chr6 160975545 160975986 + 2.16667 NA Intergenic Intergenic -15962 NM_001291958 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 268.666 chr18 39199008 39199260 + 2.16667 NA Intergenic Intergenic 423041 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 522.001-2 chr20 10499613 10499984 + 2.16667 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 64493 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 188.667-14 chr14 20415909 20416119 + 2.16667 NA Intergenic Intergenic -2513 NM_001319035 7011 Hs.508835 NM_007110 ENSG00000129566 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase associated protein 1 protein-coding 463.5-5 chr5 136878716 136879074 + 2.16667 NA Intergenic L1PB4|LINE|L1 -249302 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 300.833-7 chr2 113050467 113050717 + 2.16667 NA intron (NM_173178, intron 1 of 4) L1MB3|LINE|L1 2275 NM_014438 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 400.167-8 chr8 51903246 51903491 + 2.16667 NA Intergenic Intergenic -4182 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 332-14 chr2 140886299 140886554 + 2.16667 NA intron (NM_018557, intron 23 of 90) intron (NM_018557, intron 23 of 90) -299741 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 398.667-4 chr3 197172081 197172352 + 2.16667 NA intron (NM_001290983, intron 5 of 25) Tigger3b|DNA|TcMar-Tigger 11656 NR_158766 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 848.833 chr2 102442914 102443973 + 2.16667 NA intron (NM_003853, intron 8 of 11) intron (NM_003853, intron 8 of 11) 11154 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 526.334-4 chr3 69439689 69440275 + 2.16667 NA Intergenic L1ME3Cz|LINE|L1 -53894 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 313.334-5 chr4 35332739 35332995 + 2.16667 NA Intergenic Intergenic 911072 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 325.834-3 chr3 86255452 86255632 + 2.16667 NA Intergenic Intergenic -226401 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 645.334-2 chr20 32485101 32485430 + 2.16667 NA intron (NM_001256798, intron 4 of 10) intron (NM_001256798, intron 4 of 10) -1775 NM_001351680 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 188.5-53 chr8 90758943 90759092 + 2.16667 NA Intergenic L1M5|LINE|L1 -32758 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 538.334-3 chrX 47541294 47541643 + 2.16667 NA Intergenic Intergenic -19632 NM_001256196 369 Hs.446641 NM_001654 ENSG00000078061 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 262.334-13 chr7 25025272 25025405 + 2.16667 NA Intergenic Intergenic -45160 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 620.167 chr5 83722692 83723227 + 2.16667 NA Intergenic Intergenic -2104 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 336.834-9 chr9 2542600 2542854 + 2.16667 NA intron (NR_015375, intron 1 of 3) L1PA10|LINE|L1 -79060 NM_001322226 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 266.333-16 chr8 17864725 17864985 + 2.16667 NA intron (NM_201552, intron 8 of 8) intron (NM_201552, intron 8 of 8) 30549 NM_147203 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|HPS|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 461-5 chr7 104159931 104160256 + 2.16667 NA intron (NM_002553, intron 12 of 13) intron (NM_002553, intron 12 of 13) 47920 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 607.667-2 chr4 72504951 72505677 + 2.16667 NA intron (NM_014243, intron 3 of 21) L1PA15-16|LINE|L1 63907 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 649.5-2 chr12 47715042 47715717 + 2.16667 NA intron (NM_001172440, intron 4 of 7) MIR3|SINE|MIR -9318 NM_001146076 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 430.667-3 chr21 27703141 27703399 + 2.16667 NA Intergenic Intergenic -19109 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 383.5-3 chr2 226185653 226185971 + 2.16667 NA Intergenic Intergenic 43018 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 273.667-10 chr18 12692641 12692791 + 2.16667 NA intron (NM_001271989, intron 5 of 10) L2a|LINE|L2 10007 NM_024899 79959 Hs.236940 NM_024899 ENSG00000101624 CEP76 C18orf9|HsT1705 centrosomal protein 76 protein-coding 259.5-11 chr16 48317808 48318019 + 2.16667 NA intron (NM_031490, intron 11 of 14) intron (NM_031490, intron 11 of 14) 47974 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 309.167-11 chr20 1421384 1421673 + 2.16667 NA Intergenic Charlie1b|DNA|hAT-Charlie -28356 NR_037661 100528031 Hs.471933 NR_037661 FKBP1A-SDCBP2 - FKBP1A-SDCBP2 readthrough (NMD candidate) ncRNA 532.5-2 chr2 176110499 176111117 + 2.16667 NA Intergenic Intergenic 3528 NM_021192 3237 Hs.421136 NM_021192 ENSG00000128713 HOXD11 HOX4|HOX4F homeobox D11 protein-coding 669 chr2 98601795 98602152 + 2.16667 NA intron (NM_001008215, intron 2 of 2) MER1B|DNA|hAT-Charlie 6539 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 479.667-5 chr5 40655446 40655864 + 2.16667 NA Intergenic L1M2|LINE|L1 -24260 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 350.833-2 chr13 44488776 44488965 + 2.16667 NA intron (NM_183422, intron 1 of 2) L1ME2z|LINE|L1 -14569 NM_001243798 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 555.167 chr7 28358757 28359278 + 2.16667 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -53501 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 1158.33 chr11 32312649 32313587 + 2.16667 NA Intergenic Intergenic 87282 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 457.834-4 chr4 77538014 77538328 + 2.16667 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 26418 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 328.167 chr10 64330766 64330926 + 2.16667 NA Intergenic Intergenic -494682 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 591.166 chr11 12236678 12237127 + 2.16667 NA intron (NR_144420, intron 16 of 27) intron (NR_144420, intron 16 of 27) -49998 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 280.167-8 chr2 238375674 238375925 + 2.16667 NA intron (NM_001139490, intron 13 of 14) L1M5|LINE|L1 -51128 NM_001040445 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 393.167-11 chrX 79524869 79525401 + 2.16667 NA Intergenic L1PA15-16|LINE|L1 -157583 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 744.167 chr4 6917655 6918253 + 2.16667 NA intron (NM_020773, intron 1 of 13) intron (NM_020773, intron 1 of 13) 8128 NM_020773 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 321-16 chr4 62710293 62710611 + 2.16667 NA Intergenic Intergenic -548687 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 293.333-8 chr14 55052154 55052393 + 2.16667 NA intron (NM_144578, intron 1 of 3) intron (NM_144578, intron 1 of 3) 626 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 325.501 chr11 46020800 46021048 + 2.16667 NA intron (NR_147890, intron 5 of 18) Tigger5b|DNA|TcMar-Tigger 98268 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 522.167-3 chr10 23294406 23295254 + 2.16667 NA intron (NM_001365862, intron 5 of 15) intron (NM_001365862, intron 5 of 15) -49127 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 454.333-3 chr17 58094380 58094690 + 2.16667 NA 3' UTR (NM_080677, exon 3 of 3) 3' UTR (NM_080677, exon 3 of 3) 11116 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 375.167-7 chr6 43067206 43067422 + 2.16667 NA TTS (NM_138343) TTS (NM_138343) 7401 NM_201523 89953 Hs.655123 NM_138343 ENSG00000137171 KLC4 KNSL8|bA387M24.3 kinesin light chain 4 protein-coding 291.167-13 chr4 83122723 83122859 + 2.16667 NA Intergenic L1M5|LINE|L1 -8062 NM_016619 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 389.667-8 chr5 76348261 76348662 + 2.16667 NA intron (NM_001297716, intron 12 of 12) L1MC1|LINE|L1 -54824 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 186.5-24 chr4 67246657 67246974 + 2.16667 NA Intergenic MSTD|LTR|ERVL-MaLR 175185 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 327.167-3 chr10 101521292 101521451 + 2.16667 NA intron (NM_001256856, intron 3 of 13) intron (NM_001256856, intron 3 of 13) 66886 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 235.667-23 chr6 5398627 5398883 + 2.16667 NA intron (NM_006567, intron 2 of 6) L1MC4a|LINE|L1 59320 NR_125847 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 463.667-4 chr14 64324313 64324590 + 2.16667 NA intron (NM_001291712, intron 2 of 13) intron (NM_001291712, intron 2 of 13) 14099 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 438.667-4 chr8 106521788 106522414 + 2.16667 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) 74177 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 386.167-4 chr10 84331672 84331865 + 2.16667 NA intron (NM_018999, intron 1 of 10) intron (NM_018999, intron 1 of 10) 3179 NM_001284241 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 580-3 chr7 40147134 40147638 + 2.16667 NA intron (NM_024728, intron 1 of 14) HERVIP10FH-int|LTR|ERV1 12410 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 369-5 chr12 70692942 70693169 + 2.16667 NA intron (NM_130846, intron 4 of 9) intron (NM_130846, intron 4 of 9) -55626 NM_001109754 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 407.667-9 chr6 152301878 152302366 + 2.16667 NA intron (NM_182961, intron 91 of 145) intron (NM_182961, intron 91 of 145) -78408 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 165-6 chr10 63379599 63379719 + 2.16667 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) -6611 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 441.334 chr11 36699628 36700021 + 2.16667 NA Intergenic LTR81C|LTR|Gypsy -101545 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 550.167 chr5 163877897 163878264 + 2.16667 NA Intergenic Intergenic 372461 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 746.834 chr12 65601927 65602728 + 2.16667 NA promoter-TSS (NR_146529) promoter-TSS (NR_146529) -542 NR_146529 105369807 NR_146529 ENSG00000256268 LINC02454 - long intergenic non-protein coding RNA 2454 ncRNA 478.167-2 chr12 71870901 71871307 + 2.16667 NA intron (NM_001146214, intron 2 of 17) intron (NM_001146214, intron 2 of 17) -20121 NR_024072 729633 Hs.716256 NR_024072 MRS2P2 - MRS2 pseudogene 2 pseudo 414.334-7 chr6 43263408 43263625 + 2.16667 NA intron (NM_032538, intron 13 of 14) L2c|LINE|L2 20035 NM_032538 84630 Hs.485436 NM_032538 ENSG00000146216 TTBK1 BDTK tau tubulin kinase 1 protein-coding 413-14 chr9 78365994 78366322 + 2.16667 NA Intergenic Intergenic 69033 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 458.001 chr1 212906580 212906833 + 2.16667 NA Intergenic Intergenic -43835 NM_024749 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 565.334-2 chr3 21017112 21017604 + 2.16667 NA Intergenic L1PB1|LINE|L1 -388368 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 637.834-2 chr15 88546629 88547141 + 2.16667 NA promoter-TSS (NR_135739) promoter-TSS (NR_135739) -182 NR_135741 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 480.334-2 chr3 130735440 130735718 + 2.16667 NA intron (NM_014602, intron 3 of 19) intron (NM_014602, intron 3 of 19) 11250 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 391.5-10 chr5 134371185 134371456 + 2.16667 NA promoter-TSS (NM_003337) promoter-TSS (NM_003337) -249 NM_003337 7320 Hs.612096 NM_003337 ENSG00000119048 UBE2B E2-17kDa|HHR6B|HR6B|RAD6B|UBC2 ubiquitin conjugating enzyme E2 B protein-coding 287.833-11 chr2 200713105 200713419 + 2.16667 NA non-coding (NR_037886, exon 3 of 3) non-coding (NR_037886, exon 3 of 3) 17539 NR_135012 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 485.001-3 chr8 53804953 53805216 + 2.16667 NA intron (NM_213619, intron 6 of 12) intron (NM_213619, intron 6 of 12) 37958 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 258.5-14 chr14 73290466 73290823 + 2.16667 NA intron (NM_001005743, intron 8 of 12) intron (NM_001005743, intron 8 of 12) -44643 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 245-41 chr9 17235436 17235607 + 2.16667 NA intron (NM_001365029, intron 3 of 25) intron (NM_001365029, intron 3 of 25) 100481 NM_001365029 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 188.333-12 chr13 35019962 35020119 + 2.16667 NA intron (NM_015678, intron 1 of 57) L1MEc|LINE|L1 77753 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 501.5-3 chr15 83434729 83435137 + 2.16667 NA Intergenic L1ME3A|LINE|L1 -12295 NM_001324182 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 441.666 chr11 30314786 30315162 + 2.16667 NA Intergenic Intergenic -8130 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 232.5-32 chr8 129515721 129516049 + 2.16667 NA intron (NR_130917, intron 1 of 3) MLT1C|LTR|ERVL-MaLR -31743 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 579.001 chr12 130839302 130839631 + 2.16667 NA promoter-TSS (NM_001980) promoter-TSS (NM_001980) -216 NM_001980 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 484.334-3 chr4 72576717 72577218 + 2.16667 NA Intergenic MER5A1|DNA|hAT-Charlie -7746 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 309.333-16 chr4 154750505 154750743 + 2.16667 NA 3' UTR (NM_004744, exon 3 of 3) 3' UTR (NM_004744, exon 3 of 3) 6624 NM_004744 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 556.833 chr9 110426054 110426638 + 2.16667 NA intron (NM_153366, intron 36 of 47) intron (NM_153366, intron 36 of 47) -88462 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 390.334 chr11 106944608 106944841 + 2.16667 NA intron (NM_001256424, intron 3 of 8) intron (NM_001256424, intron 3 of 8) 73752 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 302.167-2 chr1 227049911 227050083 + 2.16667 NA intron (NM_003607, intron 21 of 35) L1ME3Cz|LINE|L1 109703 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 549.167-2 chr17 43947778 43948064 + 2.16667 NA Intergenic Intergenic -5445 NM_002722 5539 Hs.558368 NM_002722 ENSG00000108849 PPY PNP|PP pancreatic polypeptide protein-coding 390.334-2 chr2 187485871 187486097 + 2.16667 NA intron (NM_001318941, intron 5 of 7) intron (NM_001318941, intron 5 of 7) -37732 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 483.667-2 chr2 46698456 46699113 + 2.16667 NA promoter-TSS (NM_144949) promoter-TSS (NM_144949) -176 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 441.834-3 chr8 130068085 130068314 + 2.16667 NA intron (NM_001362925, intron 27 of 29) MER21-int|LTR|ERVL 16569 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 557.166-2 chr14 61286156 61286775 + 2.16667 NA Intergenic Intergenic -5127 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 330-8 chr17 31907549 31907758 + 2.16667 NA Intergenic Intergenic -5945 NM_018428 55813 Hs.589862 NM_018428 ENSG00000108651 UTP6 C17orf40|HCA66 UTP6 small subunit processome component protein-coding 1048-2 chr3 112734330 112735295 + 2.16667 NA Intergenic Intergenic -2277 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 381.834-2 chr19 49225699 49225904 + 2.16667 NA Intergenic AluJo|SINE|Alu 68009 NM_017636 54795 Hs.467101 NM_017636 ENSG00000130529 TRPM4 LTrpC4|PFHB1B|TRPM4B|hTRPM4 transient receptor potential cation channel subfamily M member 4 protein-coding 560.834 chr1 181189778 181190095 + 2.16667 NA Intergenic Intergenic 15452 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 537.001-3 chr6 13794301 13794620 + 2.16667 NA intron (NM_001031713, intron 6 of 8) intron (NM_001031713, intron 6 of 8) 20100 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 356.334-2 chr10 1252612 1252835 + 2.16667 NA intron (NM_018702, intron 4 of 9) intron (NM_018702, intron 4 of 9) 92955 NR_015376 399706 Hs.721191 NM_001010910 ENSG00000229205 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 444.667-5 chr4 42568759 42569151 + 2.16667 NA intron (NM_001105529, intron 14 of 35) intron (NM_001105529, intron 14 of 35) 88150 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 379.834 chr1 215988933 215989139 + 2.16667 NA intron (NM_206933, intron 35 of 71) intron (NM_206933, intron 35 of 71) -83429 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 465.333-6 chr8 98997840 98998325 + 2.16667 NA Intergenic Intergenic -15184 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 555.333 chr14 103921590 103921926 + 2.16667 NA promoter-TSS (NM_001127393) promoter-TSS (NM_001127393) -229 NM_001127393 9556 Hs.109052 NM_004894 ENSG00000156411 ATP5MPL 6.8PL|C14orf2|MLQ|MP68|PLPM ATP synthase membrane subunit 6.8PL protein-coding 356-12 chr18 47050347 47050589 + 2.16667 NA intron (NM_001367621, intron 2 of 15) intron (NM_001367621, intron 2 of 15) -14851 NM_016427 51224 Hs.375035 NM_016427 ENSG00000206181 ELOA2 HsT832|TCEB3B|TCEB3L elongin A2 protein-coding 227-14 chr2 30380384 30380512 + 2.16667 NA Intergenic MIR|SINE|MIR 33802 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 305.5-10 chr3 81301876 81302174 + 2.16667 NA Intergenic AluSx1|SINE|Alu 308157 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 377 chr1 182784557 182785006 + 2.16667 NA Intergenic Intergenic -4668 NM_030769 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 516.834-2 chr18 22282777 22283141 + 2.16667 NA Intergenic Intergenic 113522 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 306.334-5 chr11 79236715 79236989 + 2.16667 NA intron (NM_001098816, intron 2 of 33) intron (NM_001098816, intron 2 of 33) 165257 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 323.833 chr1 54647978 54648294 + 2.16667 NA intron (NM_001291332, intron 1 of 21) FLAM_C|SINE|Alu 6350 NM_001039464 374977 Hs.412482 NM_198547 ENSG00000184313 MROH7 C1orf175|HEATR8 maestro heat like repeat family member 7 protein-coding 677.333-2 chr8 90081226 90081720 + 2.16667 NA intron (NM_004929, intron 2 of 10) intron (NM_004929, intron 2 of 10) 1406 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 758.001 chr6 52263621 52264281 + 2.16667 NA TTS (NM_001366371) TTS (NM_001366371) -19451 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 279.5-6 chr13 43804261 43804683 + 2.16667 NA Intergenic Intergenic -17500 NM_001347963 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 391.5-9 chr5 109776292 109776879 + 2.16667 NA intron (NM_002372, intron 8 of 21) intron (NM_002372, intron 8 of 21) 87219 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 373.834 chr13 60525767 60526125 + 2.16667 NA intron (NM_030794, intron 10 of 13) intron (NM_030794, intron 10 of 13) 128726 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 415.167-3 chr4 186329460 186329805 + 2.16667 NA intron (NR_033900, intron 1 of 3) intron (NR_033900, intron 1 of 3) 63443 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 358.5-3 chr11 26866769 26867154 + 2.16667 NA Intergenic L1ME3|LINE|L1 -127151 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 483.834 chr17 19753668 19754305 + 2.16667 NA Intergenic Intergenic -5688 NM_001330150 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 616.166 chr5 73519407 73519928 + 2.16667 NA Intergenic Intergenic 21242 NM_001037637 689 Hs.591768 NM_001207 ENSG00000145741 BTF3 BETA-NAC|BTF3a|BTF3b|NACB basic transcription factor 3 protein-coding 429.834 chr11 94052916 94053190 + 2.16667 NA intron (NM_001098672, intron 2 of 19) L1MA3|LINE|L1 31699 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 297.667-5 chr11 18565086 18565516 + 2.16667 NA intron (NM_001261386, intron 3 of 6) intron (NM_001261386, intron 3 of 6) 14217 NM_001261385 55293 Hs.407991 NM_018314 ENSG00000151116 UEVLD ATTP|UEV3 UEV and lactate/malate dehyrogenase domains protein-coding 460.5-3 chr20 2006051 2006453 + 2.16667 NA intron (NR_134520, intron 3 of 3) intron (NR_134520, intron 3 of 3) -11967 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 404.334-3 chr16 48610128 48610514 + 2.16667 NA promoter-TSS (NM_153029) promoter-TSS (NM_153029) -141 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 258.667-11 chr17 68457666 68457932 + 2.16667 NA promoter-TSS (NR_135471) promoter-TSS (NR_135471) -275 NM_001320772 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 538.834 chr8 78964328 78964990 + 2.16667 NA Intergenic Intergenic 127130 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 240.167-8 chr16 89342349 89342729 + 2.16667 NA intron (NR_045839, intron 2 of 9) intron (NR_045839, intron 2 of 9) 21406 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 579.167-3 chr5 143824349 143824988 + 2.16667 NA Intergenic Intergenic 12507 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 374 chr10 70578737 70579066 + 2.16667 NA Intergenic L1ME3G|LINE|L1 23840 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 583 chr2 109127691 109128232 + 2.16667 NA non-coding (NR_029193, exon 1 of 1) non-coding (NR_029193, exon 1 of 1) -1244 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 492.167 chr5 82283690 82284081 + 2.16667 NA intron (NM_001017971, intron 2 of 9) L1MC|LINE|L1 4423 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 411.833-5 chr4 113815740 113816204 + 2.16667 NA Intergenic Intergenic -54045 NM_172127 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 365.667-4 chr16 21278419 21278759 + 2.16667 NA intron (NM_001888, intron 2 of 9).2 intron (NM_001888, intron 2 of 9).2 -22260 NR_026675 400508 Hs.578949 NM_001101368 CRYM-AS1 NCRNA00169 CRYM antisense RNA 1 ncRNA 764.667-3 chr5 149656478 149657274 + 2.16667 NA Intergenic Intergenic -73434 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 865 chr13 31741909 31742912 + 2.16667 NA intron (NM_130806, intron 1 of 17) intron (NM_130806, intron 1 of 17) 2868 NM_001166058 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 411.334 chr19 8355444 8355789 + 2.16667 NA Intergenic Intergenic -8539 NM_001039667 51129 Hs.9613 NM_016109 ENSG00000167772 ANGPTL4 ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158 angiopoietin like 4 protein-coding 466.167-2 chr5 116023655 116024056 + 2.16667 NA intron (NM_173800, intron 19 of 19) L1ME1|LINE|L1 -27611 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 454.834-3 chr2 19624017 19624516 + 2.16667 NA Intergenic L1MA8|LINE|L1 -244588 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 442.834 chr14 54711031 54711395 + 2.16667 NA intron (NM_001161576, intron 2 of 10) intron (NM_001161576, intron 2 of 10) -43620 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 372.834-3 chr16 4273740 4274117 + 2.16667 NA promoter-TSS (NM_003223) promoter-TSS (NM_003223) -905 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 548-2 chr18 23377525 23377881 + 2.16667 NA intron (NM_032933, intron 5 of 14) intron (NM_032933, intron 5 of 14) 60258 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 825.334 chr13 78137566 78138105 + 2.16667 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 82980 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 492.666 chr22 46355350 46355882 + 2.16667 NA intron (NM_001282785, intron 9 of 9) intron (NM_001282785, intron 9 of 9) 19902 NM_001282782 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 310-23 chr5 172479041 172479602 + 2.16667 NA Intergenic Intergenic -24796 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 437.5-9 chr9 115015191 115015435 + 2.16667 NA Intergenic Intergenic -84718 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 320.167-5 chr17 8186818 8187144 + 2.16667 NA promoter-TSS (NR_039746) promoter-TSS (NR_039746) 36 NR_039746 100616406 NR_039746 ENSG00000283160 MIR4521 mir-4521 microRNA 4521 ncRNA 359.5-4 chr2 18789680 18789951 + 2.16667 NA Intergenic Intergenic -200235 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 562 chr12 48814556 48815071 + 2.16667 NA promoter-TSS (NM_001206916) promoter-TSS (NM_001206916) 333 NM_001206917 784 Hs.250712 NM_000725 ENSG00000167535 CACNB3 CAB3|CACNLB3 calcium voltage-gated channel auxiliary subunit beta 3 protein-coding 473.501 chr20 21505365 21505779 + 2.16667 NA Intergenic CpG 8492 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 314.667-5 chr16 49982684 49982916 + 2.16667 NA Intergenic L1MC5|LINE|L1 -42406 NR_104042 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 405.999 chr10 58494607 58494950 + 2.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -18094 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 249-6 chr13 41668034 41668409 + 2.16667 NA intron (NM_015058, intron 37 of 44) intron (NM_015058, intron 37 of 44) -99826 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 262-3 chr1 119291473 119291630 + 2.16667 NA Intergenic Intergenic -36701 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 334-10 chr3 161888823 161889122 + 2.16667 NA Intergenic L2c|LINE|L2 392164 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 436.667-7 chr20 60143450 60143808 + 2.16667 NA intron (NR_046099, intron 1 of 4) LTR54|LTR|ERV1 5137 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 434.334 chr18 43620891 43621219 + 2.16667 NA Intergenic MER5A|DNA|hAT-Charlie -343565 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 211.833-6 chr15 48343118 48343322 + 2.16667 NA 3' UTR (NM_001330286, exon 7 of 7) 3' UTR (NM_001330286, exon 7 of 7) 11023 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 538.167-4 chr9 69671974 69672441 + 2.16667 NA 5' UTR (NM_001163, exon 1 of 13) 5' UTR (NM_001163, exon 1 of 13) 164 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 537.001 chr10 76026468 76026810 + 2.16667 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 243878 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 439.5-3 chr6 51426222 51426527 + 2.16667 NA Intergenic Intergenic -195496 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 187-22 chr2 191206804 191206906 + 2.16667 NA Intergenic Intergenic -38549 NM_001330237 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 306.167-9 chr8 41770678 41770920 + 2.16667 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 26823 NM_020477 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 539.166-2 chr6 3612582 3612946 + 2.16667 NA Intergenic Intergenic 139248 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 710.167 chr1 27197813 27198347 + 2.16667 NA Intergenic Intergenic -36552 NM_015023 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 215.667-42 chr7 117298240 117298357 + 2.16667 NA intron (NM_003391, intron 3 of 4) intron (NM_003391, intron 3 of 4) 24760 NM_003391 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 420.334-3 chr20 4591729 4592054 + 2.16667 NA Intergenic Intergenic -94565 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 199-21 chr2 16894514 16894769 + 2.16667 NA Intergenic L1MEd|LINE|L1 -228807 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 767.5 chr6 53734553 53735435 + 2.16667 NA Intergenic L1MEd|LINE|L1 -60011 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 331.833-6 chr5 4700165 4700412 + 2.16667 NA Intergenic Intergenic -73193 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 436.667-8 chr5 137881488 137881711 + 2.16667 NA intron (NM_006790, intron 5 of 9) AluSx|SINE|Alu -7858 NM_001300921 27039 Hs.716884 NM_014386 ENSG00000078795 PKD2L2 TRPP5 polycystin 2 like 2, transient receptor potential cation channel protein-coding 1018.5-2 chr22 35150200 35151114 + 2.16667 NA intron (NR_126356, intron 4 of 5) intron (NR_126356, intron 4 of 5) 80399 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 461.667-3 chr8 84724736 84725033 + 2.16667 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 18957 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 355.834 chr1 31633369 31633556 + 2.16667 NA intron (NR_033686, intron 1 of 3) intron (NR_033686, intron 1 of 3) 11155 NM_001359651 553115 Hs.470417 NM_012392 ENSG00000162517 PEF1 ABP32|PEF1A penta-EF-hand domain containing 1 protein-coding 365.833-4 chr13 113280511 113280710 + 2.16667 NA Intergenic L1MEc|LINE|L1 -16629 NM_005561 3916 Hs.494419 NM_005561 ENSG00000185896 LAMP1 CD107a|LAMPA|LGP120 lysosomal associated membrane protein 1 protein-coding 248.667-5 chr10 61639216 61639394 + 2.16667 NA Intergenic Intergenic -23624 NM_001366909 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 377.667-3 chr11 84755596 84755872 + 2.16667 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -34792 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 371.001-2 chr20 56086447 56086640 + 2.16667 NA Intergenic L1MEc|LINE|L1 -81024 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 446.667-2 chr19 12796692 12797134 + 2.16667 NA TTS (NM_005809) TTS (NM_005809) 4887 NM_005809 7001 Hs.432121 NM_005809 ENSG00000167815 PRDX2 HEL-S-2a|NKEF-B|NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA peroxiredoxin 2 protein-coding 197.667-2 chr1 200730668 200730809 + 2.16667 NA Intergenic Charlie18a|DNA|hAT-Charlie -8834 NM_001297708 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 409.667 chr11 18434960 18435220 + 2.16667 NA intron (NM_017448, intron 5 of 7) intron (NM_017448, intron 5 of 7) -20766 NM_144972 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 483.999-2 chr3 184058158 184058565 + 2.16667 NA intron (NM_130770, intron 5 of 8) intron (NM_130770, intron 5 of 8) 5314 NM_130770 170572 Hs.632579 NM_130770 ENSG00000178084 HTR3C - 5-hydroxytryptamine receptor 3C protein-coding 836.667-3 chr4 40325188 40326008 + 2.16667 NA intron (NR_121640, intron 1 of 2) intron (NR_121640, intron 1 of 2) 9114 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 386.001-3 chr4 89891574 89891924 + 2.16667 NA intron (NM_001371403, intron 1 of 8) intron (NM_001371403, intron 1 of 8) -3105 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 412.834-8 chr4 156475243 156475453 + 2.16667 NA Intergenic Intergenic 496451 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 490.167-4 chrX 115690787 115691043 + 2.16667 NA Intergenic Intergenic 97364 NM_001172335 5358 Hs.496622 NM_005032 ENSG00000102024 PLS3 BMND18|T-plastin plastin 3 protein-coding 474.667-3 chr18 13703545 13703924 + 2.16667 NA intron (NM_001098801, intron 1 of 4) MER57-int|LTR|ERV1 22824 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 449.667-5 chr8 108728981 108729243 + 2.16667 NA intron (NR_136411, intron 1 of 3) MLT1E2|LTR|ERVL-MaLR 58482 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 341.666-5 chr6 127462578 127462851 + 2.16667 NA intron (NM_001012279, intron 7 of 11) intron (NM_001012279, intron 7 of 11) -3325 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 1021.17 chr5 147098046 147098877 + 2.16667 NA Intergenic Intergenic -16941 NM_001271899 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 321.5 chr1 55191370 55191629 + 2.16667 NA intron (NM_015306, intron 1 of 67) AluSx3|SINE|Alu 23865 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 437.167-3 chr17 69339446 69339656 + 2.16667 NA Intergenic Intergenic -12418 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 258-28 chr4 177047324 177047619 + 2.16667 NA Intergenic Intergenic 171769 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 297-24 chr8 131031432 131031635 + 2.16667 NA intron (NM_001115, intron 1 of 17) MSTC|LTR|ERVL-MaLR 9376 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 450.001 chr12 62827290 62827680 + 2.16667 NA intron (NM_020700, intron 2 of 9) intron (NM_020700, intron 2 of 9) 107665 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 287.5-20 chr6 37653900 37654221 + 2.16667 NA intron (NM_153487, intron 6 of 16) MIRc|SINE|MIR 43823 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 486.334-4 chr9 129716006 129716343 + 2.16667 NA intron (NR_132102, intron 1 of 1) L1MC5a|LINE|L1 2532 NR_132102 101929437 Hs.112596 NR_132102 ENSG00000236024 PRRX2-AS1 - PRRX2 antisense RNA 1 ncRNA 315.667-5 chr11 23333305 23333477 + 2.16667 NA Intergenic L1ME2z|LINE|L1 85799 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 370.167-2 chr15 58711322 58711719 + 2.16667 NA intron (NM_001320570, intron 2 of 14) intron (NM_001320570, intron 2 of 14) -17913 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 449-6 chr8 22178764 22179227 + 2.16667 NA intron (NR_033404, intron 6 of 15) intron (NR_033404, intron 6 of 15) 13623 NM_006129 649 Hs.1274 NM_001199 ENSG00000168487 BMP1 OI13|PCOLC|PCP|PCP2|TLD bone morphogenetic protein 1 protein-coding 407.5-11 chr5 89777291 89777575 + 2.16667 NA Intergenic L1MCa|LINE|L1 239287 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 377.501-2 chr18 12886503 12886693 + 2.16667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -2263 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 1361.34 chr12 65231968 65233225 + 2.16667 NA intron (NM_014319, intron 4 of 12) intron (NM_014319, intron 4 of 12) -46087 NM_198080 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 239.834-10 chr6 91887713 91887884 + 2.16667 NA Intergenic Intergenic -197370 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 508.833-3 chr11 13216238 13216902 + 2.16667 NA Intergenic Intergenic -60082 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 421.333-3 chr14 60064645 60064972 + 2.16667 NA TTS (NM_001355272) TTS (NM_001355272) -27103 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 348.5-3 chr10 26033657 26033871 + 2.16667 NA intron (NM_017433, intron 10 of 34) intron (NM_017433, intron 10 of 34) 99535 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 885.001 chr10 71383784 71384628 + 2.16667 NA Intergenic Intergenic -12714 NM_001171930 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 172.5-11 chr11 73964230 73964540 + 2.16667 NA intron (NM_153614, intron 3 of 7) intron (NM_153614, intron 3 of 7) 14066 NM_153614 374407 Hs.567888 NM_153614 ENSG00000187726 DNAJB13 CILD34|RSPH16A|TSARG5|TSARG6 DnaJ heat shock protein family (Hsp40) member B13 protein-coding 828.001 chr1 169538223 169539200 + 2.16667 NA intron (NM_000130, intron 13 of 24) L1MD1|LINE|L1 47820 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 335.501-2 chr2 193963753 193963962 + 2.16667 NA Intergenic Intergenic -380412 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 455.334-4 chr3 14213213 14213674 + 2.16667 NA Intergenic AluJr4|SINE|Alu 34626 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 356.334 chr1 150181835 150182034 + 2.16667 NA TTS (NR_135098) TTS (NR_135098) 21206 NR_135098 105371433 Hs.599366 NR_135098 LOC105371433 - uncharacterized LOC105371433 ncRNA 754.666 chr4 89158540 89159134 + 2.16667 NA Intergenic Charlie4a|DNA|hAT-Charlie 46020 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 346.167-8 chr20 36612460 36612892 + 2.16667 NA TTS (NM_199483) TTS (NM_199483) 6897 NR_026562 55969 Hs.584985 NM_018840 ENSG00000101084 RAB5IF C20orf24|PNAS-11|RIP5 RAB5 interacting factor protein-coding 484-4 chr4 6873362 6874180 + 2.16667 NA intron (NM_001100590, intron 7 of 8) intron (NM_001100590, intron 7 of 8) -35673 NM_001113361 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 293.5-9 chr12 129523457 129523867 + 2.16667 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 315061 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 584.834-2 chr16 30370571 30371015 + 2.16667 NA promoter-TSS (NM_015527) promoter-TSS (NM_015527) -141 NM_001324459 29895 Hs.50889 NM_013292 ENSG00000180209 MYLPF HUMMLC2B|MLC2B|MRLC2|MYL11 myosin light chain, phosphorylatable, fast skeletal muscle protein-coding 576.667-2 chr11 121195558 121196063 + 2.16667 NA Intergenic Intergenic 93144 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 597.5-4 chr2 190017904 190018504 + 2.16667 NA Intergenic L1MA7|LINE|L1 44525 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 1096.5-2 chr2 113977520 113978750 + 2.16667 NA non-coding (NR_034130, exon 1 of 1) non-coding (NR_034130, exon 1 of 1) -1434 NR_148509 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 479-2 chr11 127641647 127641984 + 2.16667 NA Intergenic MIRb|SINE|MIR 370745 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 391.333-6 chr6 27663838 27664149 + 2.16667 NA Intergenic Intergenic -30042 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 646.5-2 chr11 65615098 65615811 + 2.16667 NA promoter-TSS (NM_032223) promoter-TSS (NM_032223) -858 NM_032223 399909 Hs.380801 NM_032223 ENSG00000197136 PCNX3 PCNXL3 pecanex 3 protein-coding 321.666-5 chr8 124320969 124321192 + 2.16667 NA intron (NM_194291, intron 5 of 6) intron (NM_194291, intron 5 of 6) 51619 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 371.167-7 chr5 150129710 150130331 + 2.16667 NA intron (NM_002609, intron 9 of 22) intron (NM_002609, intron 9 of 22) -16648 NM_005211 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 523.001-2 chr2 139790960 139791428 + 2.16667 NA Intergenic Intergenic 795491 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 398.5-9 chr5 72801970 72802187 + 2.16667 NA Intergenic L1MD1|LINE|L1 -14513 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 422.167-3 chr2 112645439 112645784 + 2.16667 NA promoter-TSS (NM_005415) promoter-TSS (NM_005415) -328 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 210.333-11 chr13 81251925 81252043 + 2.16667 NA Intergenic L1MEc|LINE|L1 -25001 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 319-19 chr8 126437268 126437507 + 2.16667 NA Intergenic L2a|LINE|L2 111892 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 449.333-2 chr2 47344711 47345140 + 2.16667 NA non-coding (NR_110208, exon 1 of 5) non-coding (NR_110208, exon 1 of 5) 149 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 EPCAM-DT - EPCAM divergent transcript ncRNA 409.667-7 chr6 157764541 157764849 + 2.16667 NA Intergenic Intergenic -58551 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 373.167-5 chr2 68595125 68595357 + 2.16667 NA Intergenic Intergenic -48347 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 532.834 chr1 58755578 58756013 + 2.16667 NA Intergenic Intergenic 28252 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 372.333 chr1 12345680 12345956 + 2.16667 NA intron (NM_015378, intron 43 of 69) intron (NM_015378, intron 43 of 69) 115788 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 393.167-6 chr3 4813643 4813998 + 2.16667 NA intron (NM_001168272, intron 56 of 60) L2a|LINE|L2 -62230 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 248-33 chr5 149114853 149115026 + 2.16667 NA Intergenic Intergenic -26508 NM_001301018 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 342.667-10 chr2 229839025 229839219 + 2.16667 NA intron (NM_001284216, intron 2 of 38) Tigger3a|DNA|TcMar-Tigger 82557 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 931.999 chr22 21641646 21642641 + 2.16667 NA promoter-TSS (NM_022044) promoter-TSS (NM_022044) -159 NM_022044 23753 Hs.303116 NM_022044 ENSG00000128228 SDF2L1 - stromal cell derived factor 2 like 1 protein-coding 514.501 chr1 51659137 51659495 + 2.16667 NA intron (NM_001350209, intron 2 of 23) L1M5|LINE|L1 42224 NR_036662 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 512.333-4 chr5 11272417 11272832 + 2.16667 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 316293 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 266.833-10 chr2 147191295 147191519 + 2.16667 NA Intergenic L1MB2|LINE|L1 604350 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 231.667-26 chr6 151087717 151087990 + 2.16667 NA intron (NR_146719, intron 27 of 28) intron (NR_146719, intron 27 of 28) -14822 NR_162145 113219461 NR_162145 MIR12131 - microRNA 12131 ncRNA 423.167-9 chr6 37161111 37161499 + 2.16667 NA Intergenic Intergenic -8847 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 249.5-11 chr3 78138927 78139319 + 2.16667 NA Intergenic Intergenic -90160 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 555.666 chr3 18389286 18389921 + 2.16667 NA intron (NM_001131010, intron 7 of 10) intron (NM_001131010, intron 7 of 10) 35736 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 638.166 chr7 27662776 27663213 + 2.16667 NA promoter-TSS (NM_152740) promoter-TSS (NM_152740) -111 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 272.167-13 chr2 104767370 104767502 + 2.16667 NA Intergenic Intergenic -9717 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 550.168 chr15 59769371 59769783 + 2.16667 NA Intergenic Intergenic -80257 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 1234.5 chr1 55375170 55376225 + 2.16667 NA Intergenic Intergenic 150056 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 425-6 chr14 22082777 22083001 + 2.16667 NA Intergenic L1M5|LINE|L1 349864 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 784.667 chr10 51118595 51119100 + 2.16667 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 44360 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 293.167-3 chr12 109134276 109134532 + 2.16667 NA intron (NM_001093, intron 1 of 52) intron (NM_001093, intron 1 of 52) 17817 NM_001093 32 Hs.234898 NM_001093 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 605-2 chr17 78250683 78251396 + 2.16667 NA Intergenic Intergenic 19729 NM_001204211 283999 Hs.632228 NM_001145529 ENSG00000204278 TMEM235 ARGM1 transmembrane protein 235 protein-coding 373.667-3 chr5 59218192 59218674 + 2.16667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 57682 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 530 chr1 23544560 23545083 + 2.16667 NA Intergenic Intergenic -13588 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 339-11 chr2 229273860 229274221 + 2.16667 NA Intergenic Intergenic -2753 NM_017933 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 596-5 chr5 132714598 132715199 + 2.16667 NA intron (NM_007054, intron 8 of 16) intron (NM_007054, intron 8 of 16) 22648 NM_007054 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 338.667-15 chr9 113807341 113807797 + 2.16667 NA Intergenic Intergenic -68713 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 977.5 chr2 121530471 121531473 + 2.16667 NA promoter-TSS (NR_023343) promoter-TSS (NR_023343) 92 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 192.667-9 chr13 32538881 32539053 + 2.16667 NA promoter-TSS (NM_001278432) promoter-TSS (NM_001278432) -82 NM_001278432 10443 Hs.507680 NM_014887 ENSG00000244754 N4BP2L2 92M18.3|CG005|CG016|PFAAP5 NEDD4 binding protein 2 like 2 protein-coding 244.333-30 chr5 176675463 176675961 + 2.16667 NA Intergenic L1MB7|LINE|L1 28228 NM_001006616 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 392.834-5 chr5 171910796 171911080 + 2.16667 NA intron (NM_033645, intron 1 of 11) intron (NM_033645, intron 1 of 11) 95935 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 787.167 chr2 79860655 79861460 + 2.16667 NA intron (NM_001282598, intron 4 of 17) intron (NM_001282598, intron 4 of 17) 5526 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 854.666 chr8 60412268 60413071 + 2.16667 NA intron (NR_103854, intron 1 of 2) intron (NR_103854, intron 1 of 2) 1149 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 704 chr15 90869731 90870361 + 2.16667 NA intron (NM_002569, intron 1 of 15) intron (NM_002569, intron 1 of 15) 1458 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding 239.334-4 chr14 87680534 87680747 + 2.16667 NA Intergenic MER20|DNA|hAT-Charlie -25346 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 731.334 chr10 126748894 126749480 + 2.16667 NA Intergenic Intergenic -78677 NM_001350921 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 445.667-3 chr5 63391399 63391632 + 2.16667 NA Intergenic Intergenic 570777 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 398.834-2 chr12 15381668 15381880 + 2.16667 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 59266 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 548.167-2 chr15 70569121 70569561 + 2.16667 NA Intergenic MER68|LTR|ERVL 17265 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 347.5-14 chr7 117613115 117613318 + 2.16667 NA intron (NM_000492, intron 20 of 26) intron (NM_000492, intron 20 of 26) -48540 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 493.167 chr10 106722472 106722800 + 2.16667 NA intron (NM_001206569, intron 6 of 25) intron (NM_001206569, intron 6 of 25) 442070 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 169-36 chr20 51041167 51041293 + 2.16667 NA Intergenic L2|LINE|L2 -18123 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 406.667-4 chr8 63186082 63186309 + 2.16667 NA exon (NM_001277815, exon 5 of 6) exon (NM_001277815, exon 5 of 6) 17192 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 370.833-2 chr10 109264922 109265255 + 2.16667 NA Intergenic Intergenic 658158 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 652.334 chr16 50665465 50665901 + 2.16667 NA TTS (NM_153337) TTS (NM_153337) -3172 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 339.167-16 chr8 24661938 24662094 + 2.16667 NA Intergenic MIR|SINE|MIR -113398 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 412.834-3 chr15 61521056 61521572 + 2.16667 NA Intergenic L1M5|LINE|L1 -208604 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 383.167-2 chr1 112804341 112804634 + 2.16667 NA Intergenic Intergenic 46156 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 451.501-2 chr8 124539570 124539909 + 2.16667 NA promoter-TSS (NR_027427) promoter-TSS (NR_027427) 616 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 311.167-8 chr3 78807409 78807621 + 2.16667 NA intron (NM_002941, intron 4 of 30) Kanga1d|DNA|TcMar-Tc2 211944 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 744.667-2 chr22 24555203 24555824 + 2.16667 NA promoter-TSS (NM_001284254) promoter-TSS (NM_001284254) -137 NR_103819 6634 Hs.356549 NM_004175 ENSG00000100028 SNRPD3 SMD3|Sm-D3 small nuclear ribonucleoprotein D3 polypeptide protein-coding 377.5-6 chr3 99079814 99080042 + 2.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -178233 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 247.167-15 chr3 162778429 162778679 + 2.16667 NA Intergenic Intergenic 524747 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 595.666-2 chr3 105366425 105366794 + 2.16667 NA promoter-TSS (NM_001627) promoter-TSS (NM_001627) -104 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 502.001-2 chr4 93257649 93257979 + 2.16667 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -570939 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 675.001 chr11 21810551 21810999 + 2.16667 NA Intergenic MIRb|SINE|MIR -382310 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 607.334-2 chr8 123044863 123045285 + 2.16667 NA Intergenic Intergenic -2651 NM_001330601 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 501-7 chr9 101465480 101466013 + 2.16667 NA Intergenic Intergenic -2693 NR_121576 101928470 Hs.656088 NR_121573 ENSG00000225376 TMEM246-AS1 - TMEM246 antisense RNA 1 ncRNA 426.334-3 chr4 81913262 81913474 + 2.16667 NA Intergenic MIR|SINE|MIR -441461 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 264.666 chr1 170165822 170166079 + 2.16667 NA intron (NM_001136107, intron 2 of 3) intron (NM_001136107, intron 2 of 3) -8429 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 183.167-34 chr6 108133987 108134085 + 2.16667 NA intron (NR_145458, intron 1 of 1) CpG 10403 NR_145458 100287366 Hs.221513 NR_145458 ENSG00000225174 OSTM1-AS1 - OSTM1 antisense RNA 1 ncRNA 994.667 chr8 141083359 141084694 + 2.16667 NA Intergenic Intergenic -44563 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 576.5-4 chr5 10695216 10695731 + 2.16667 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 65761 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 321.834-5 chr3 39709036 39709292 + 2.16667 NA Intergenic L5|LINE|RTE-X -99750 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 901.5-2 chr15 98177670 98178661 + 2.16667 NA Intergenic Intergenic -89412 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 300.167-5 chr15 66698447 66698763 + 2.16667 NA Intergenic Intergenic -3631 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 477.667-2 chr19 27793236 27793991 + 2.16667 NA promoter-TSS (NR_110687) promoter-TSS (NR_110687) 182 NR_110688 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 455.334-3 chr17 80899461 80899797 + 2.16667 NA intron (NM_020761, intron 20 of 33) MER58B|DNA|hAT-Charlie 71584 NR_148968 400627 Hs.591201 NR_148968 ENSG00000261924 LOC400627 - uncharacterized LOC400627 ncRNA 348.833-3 chr20 8123459 8123685 + 2.16667 NA Intergenic Intergenic -8694 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 1109.5-2 chr12 50825236 50826283 + 2.16667 NA Intergenic FLAM_C|SINE|Alu -17167 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 1088.33 chr11 87352523 87353480 + 2.16667 NA Intergenic Intergenic 315067 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 294.667-26 chr9 18214557 18214740 + 2.16667 NA Intergenic Zaphod|DNA|hAT-Tip100 -259505 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 575.5-2 chr15 64730995 64731544 + 2.16667 NA Intergenic Intergenic -27988 NM_001301302 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 430.833-3 chr14 51251919 51252313 + 2.16667 NA intron (NM_030755, intron 7 of 7) intron (NM_030755, intron 7 of 7) 11869 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 392-5 chr22 36178405 36178734 + 2.16667 NA Intergenic Intergenic -12392 NM_145641 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 213-5 chr10 61178587 61178785 + 2.16667 NA Intergenic L2c|LINE|L2 162411 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 214.167-10 chr19 17260985 17261121 + 2.16667 NA intron (NM_031941, intron 4 of 12) L2|LINE|L2 3692 NM_001297703 83878 Hs.512773 NM_031941 ENSG00000130307 USHBP1 AIEBP|MCC2 USH1 protein network component harmonin binding protein 1 protein-coding 365.667-7 chr3 56284434 56284782 + 2.16667 NA intron (NR_132749, intron 3 of 17) intron (NR_132749, intron 3 of 17) 183859 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 267.5-2 chr1 217888823 217889077 + 2.16667 NA Intergenic Intergenic -3950 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 445.5-6 chr5 90024425 90024716 + 2.16667 NA Intergenic L1PB2|LINE|L1 -7850 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 512.333-3 chr17 66673694 66674210 + 2.16667 NA intron (NM_002737, intron 5 of 16) intron (NM_002737, intron 5 of 16) -113120 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 293.334-6 chr2 241784549 241784763 + 2.16667 NA intron (NM_022134, intron 1 of 3) MER4-int|LTR|ERV1 7834 NM_022134 64090 Hs.632556 NM_022134 ENSG00000154252 GAL3ST2 GAL3ST-2|GP3ST galactose-3-O-sulfotransferase 2 protein-coding 440.167-8 chr3 45501987 45502260 + 2.16667 NA intron (NM_001368263, intron 14 of 20) L1MA2|LINE|L1 7422 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 650.667-4 chr21 36854250 36854891 + 2.16667 NA intron (NM_001352515, intron 6 of 10) intron (NM_001352515, intron 6 of 10) 107788 NM_001352518 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 301.167-20 chr9 25233875 25234147 + 2.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 444847 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 351.167-8 chr9 71681649 71681936 + 2.16667 NA Intergenic Intergenic 86721 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 510.501-2 chr4 87678495 87679105 + 2.16667 NA Intergenic Intergenic 28520 NM_004407 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 251.334-10 chr2 48492311 48492475 + 2.16667 NA intron (NM_001193475, intron 15 of 19) L1ME3G|LINE|L1 -37532 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 260-14 chr17 72370050 72370219 + 2.16667 NA Intergenic MIRc|SINE|MIR 27323 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 372.333-4 chr14 52852729 52852926 + 2.16667 NA Intergenic Intergenic -61220 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 302.667-11 chr6 34527223 34527701 + 2.16667 NA exon (NM_020804, exon 3 of 10) exon (NM_020804, exon 3 of 10) 12590 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 427-3 chr12 29381212 29381600 + 2.16667 NA promoter-TSS (NM_016570) promoter-TSS (NM_016570) -234 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 859.668 chr10 108544692 108545535 + 2.16667 NA Intergenic L1MB3|LINE|L1 -475820 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 396.833-5 chr11 2400383 2400748 + 2.16667 NA promoter-TSS (NM_005706) promoter-TSS (NM_005706) -185 NM_001297660 10078 Hs.523424 NM_005706 ENSG00000184281 TSSC4 - tumor suppressing subtransferable candidate 4 protein-coding 720.833-2 chr3 178083907 178084650 + 2.16667 NA Intergenic Intergenic 267413 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 378.167-3 chr16 70529202 70529758 + 2.16667 NA promoter-TSS (NR_037420) promoter-TSS (NR_037420) -19 NR_037420 100113402 NR_037420 SNORD111B MIR3647 small nucleolar RNA, C/D box 111B snoRNA 336.334-5 chr2 84223258 84223462 + 2.16667 NA Intergenic L1M4b|LINE|L1 -67322 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 483.833-2 chr2 183347566 183348005 + 2.16667 NA Intergenic Intergenic 223342 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 390.167-7 chr4 109763680 109764001 + 2.16667 NA intron (NM_001331035, intron 3 of 11) L1MEd|LINE|L1 -33770 NM_030821 81579 Hs.389452 NM_030821 ENSG00000123739 PLA2G12A GXII|PLA2G12|ROSSY phospholipase A2 group XIIA protein-coding 318.5-20 chr8 139519130 139519290 + 2.16667 NA Intergenic L1MA5A|LINE|L1 183913 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 302.167-5 chr14 33810461 33810621 + 2.16667 NA Intergenic Intergenic 101604 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 329.167-17 chr9 96268298 96268512 + 2.16667 NA intron (NM_000197, intron 2 of 10) L1ME3E|LINE|L1 21942 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 298.834-2 chr20 283017 283333 + 2.16667 NA intron (NM_153269, intron 4 of 10) intron (NM_153269, intron 4 of 10) 7575 NM_153269 140680 Hs.348112 NM_080571 ENSG00000196476 C20orf96 dJ1103G7.2 chromosome 20 open reading frame 96 protein-coding 584.167-3 chr8 16831272 16831864 + 2.16667 NA Intergenic Intergenic 170777 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 616.667 chr11 10750753 10751169 + 2.16667 NA promoter-TSS (NM_001346279) promoter-TSS (NM_001346279) -285 NM_001346279 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 428.833-2 chr5 78012326 78012600 + 2.16667 NA intron (NM_003664, intron 26 of 26) intron (NM_003664, intron 26 of 26) 54216 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 438.499-2 chr5 163005882 163006196 + 2.16667 NA Intergenic L1MB3|LINE|L1 -431532 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 250.667-24 chr2 218970257 218970469 + 2.16667 NA Intergenic L1M5|LINE|L1 -5921 NR_024385 151300 Hs.420716 NR_015390 LINC00608 - long intergenic non-protein coding RNA 608 ncRNA 246.334 chr1 1221413 1221676 + 2.16667 NA intron (NM_016176, intron 4 of 6) AluJb|SINE|Alu -7391 NM_003327 7293 Hs.129780 NM_003327 ENSG00000186827 TNFRSF4 ACT35|CD134|IMD16|OX40|TXGP1L TNF receptor superfamily member 4 protein-coding 320.5-14 chr5 55449671 55450012 + 2.16667 NA intron (NR_103485, intron 4 of 6) intron (NR_103485, intron 4 of 6) 59085 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 429.5-6 chr3 46895137 46895592 + 2.16667 NA intron (NM_001184744, intron 3 of 14) intron (NM_001184744, intron 3 of 14) 13115 NM_001184744 5745 Hs.1019 NM_000316 ENSG00000160801 PTH1R EKNS|PFE|PTHR|PTHR1 parathyroid hormone 1 receptor protein-coding 464.834-2 chr1 204411618 204412037 + 2.16667 NA promoter-TSS (NM_032833) promoter-TSS (NM_032833) -10 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 225.167-17 chr21 25702297 25702485 + 2.16667 NA intron (NM_001270407, intron 5 of 8) intron (NM_001270407, intron 5 of 8) -32581 NM_001197297 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 291.667-9 chr20 53206273 53206463 + 2.16667 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 21085 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 398 chr1 59720396 59720736 + 2.16667 NA intron (NM_001350790, intron 15 of 16) intron (NM_001350790, intron 15 of 16) 12730 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 375.667-16 chrX 154717751 154718097 + 2.16667 NA intron (NR_104114, intron 1 of 8) intron (NR_104114, intron 1 of 8) 33153 NM_001282283 139716 Hs.496982 NM_080612 ENSG00000160219 GAB3 - GRB2 associated binding protein 3 protein-coding 307.834-4 chr11 104468614 104468834 + 2.16667 NA Intergenic L2b|LINE|L2 140578 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 182.667-8 chr10 60455206 60455375 + 2.16667 NA intron (NM_001204403, intron 2 of 43) Charlie15b|DNA|hAT-Charlie -65415 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 550.334 chr3 78734741 78735034 + 2.16667 NA intron (NM_002941, intron 5 of 30) intron (NM_002941, intron 5 of 30) 284572 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 386.333-5 chr17 74200736 74201030 + 2.16667 NA Intergenic Intergenic -2795 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 628.667-2 chr20 6253104 6253797 + 2.16667 NA Intergenic Intergenic -129906 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 589.5 chr17 42763358 42763860 + 2.16667 NA TTS (NM_005854) TTS (NM_005854) -2352 NR_024462 100190938 Hs.655265 NR_024461 ENSG00000197291 RAMP2-AS1 - RAMP2 antisense RNA 1 ncRNA 304-28 chr7 641269 641560 + 2.16667 NA intron (NM_001164760, intron 4 of 10) intron (NM_001164760, intron 4 of 10) 38016 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 431.666 chr14 74140996 74141320 + 2.16667 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) 56205 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 206.5-27 chr18 76459903 76460109 + 2.16667 NA intron (NM_014643, intron 2 of 6) intron (NM_014643, intron 2 of 6) -31646 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 262-15 chr21 24630236 24630399 + 2.16667 NA Intergenic Intergenic 201577 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 392-11 chr8 115251145 115251480 + 2.16667 NA Intergenic Intergenic 416701 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 458.167-2 chr7 24665893 24666284 + 2.16667 NA exon (NM_001303037, exon 8 of 12) exon (NM_001303037, exon 8 of 12) 91376 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 351.334-6 chr4 107662514 107662812 + 2.16667 NA intron (NM_005443, intron 5 of 11) intron (NM_005443, intron 5 of 11) 57571 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 478.001-2 chr5 142655407 142655821 + 2.16667 NA intron (NM_001144935, intron 1 of 3) intron (NM_001144935, intron 1 of 3) -11313 NM_001257210 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 475.168 chr8 59753154 59753475 + 2.16667 NA Intergenic L1ME3G|LINE|L1 528086 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 335.667-4 chr12 92141416 92141582 + 2.16667 NA 3' UTR (NM_001731, exon 2 of 2) 3' UTR (NM_001731, exon 2 of 2) 214 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 358.833-8 chr3 109803182 109803416 + 2.16667 NA Intergenic Intergenic 200471 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 398.001 chr14 64671490 64671686 + 2.16667 NA Intergenic Intergenic -32836 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 378.834-2 chr4 80221140 80221417 + 2.16667 NA Intergenic Intergenic 23775 NM_001099403 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 573.334 chr14 21734382 21735024 + 2.16667 NA Intergenic Intergenic -63686 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 166.334-3 chr16 75801433 75801544 + 2.16667 NA Intergenic Intergenic -74998 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 339.167-15 chr7 130794273 130794493 + 2.16667 NA Intergenic Intergenic -60350 NM_138693 136259 Hs.125240 NM_138693 ENSG00000266265 KLF14 BTEB5 Kruppel like factor 14 protein-coding 252.667-21 chr7 85596761 85597029 + 2.16667 NA Intergenic Intergenic 175773 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 300.834-2 chr1 61336035 61336199 + 2.16667 NA intron (NM_001134673, intron 4 of 10) intron (NM_001134673, intron 4 of 10) -82599 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 225.5-26 chr7 105351991 105352163 + 2.16667 NA intron (NM_001350746, intron 2 of 14) MIRc|SINE|MIR 36844 NM_182692 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 476.5-4 chr21 30434194 30434722 + 2.16667 NA Intergenic AluSx3|SINE|Alu 4204 NM_181600 284827 Hs.553677 NM_181600 ENSG00000186971 KRTAP13-4 KAP13.4 keratin associated protein 13-4 protein-coding 309.667-14 chr3 64399365 64399623 + 2.16667 NA Intergenic Intergenic -131321 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 340.834-3 chr11 104120444 104120751 + 2.16667 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 43550 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 259.5-3 chr1 210143585 210143873 + 2.16667 NA intron (NM_153262, intron 6 of 7) intron (NM_153262, intron 6 of 7) -89067 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 443-8 chr8 129202226 129202513 + 2.16667 NA Intergenic MIR|SINE|MIR 38871 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 197-32 chr7 27772797 27772975 + 2.16667 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 32791 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 420.667-3 chr3 122612 123000 + 2.16667 NA Intergenic Intergenic -73790 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 324-3 chr13 72412369 72412577 + 2.16667 NA Intergenic Intergenic 315156 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 315.5-11 chr6 160731091 160731371 + 2.16667 NA exon (NM_000301, exon 11 of 19) exon (NM_000301, exon 11 of 19) 29038 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 456.5-3 chr2 38740827 38741207 + 2.16667 NA Intergenic Intergenic 10344 NM_001031684 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 827.5-4 chr6 134156545 134157183 + 2.16667 NA Intergenic Intergenic 18002 NM_001291995 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 411.5-3 chr6 104851943 104852198 + 2.16667 NA intron (NR_146792, intron 2 of 24) intron (NR_146792, intron 2 of 24) 7476 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 853.501 chr4 93788347 93789292 + 2.16667 NA Intergenic Intergenic -39934 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 221-9 chr13 100791310 100791499 + 2 NA intron (NR_047687, intron 2 of 7) AluSx1|SINE|Alu 83079 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 207.5-15 chr16 83113257 83113536 + 2 NA intron (NM_001220489, intron 3 of 12) MIRb|SINE|MIR -123098 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 194-28 chr22 24715011 24715113 + 2 NA Intergenic L1ME1|LINE|L1 -49439 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 663.334-2 chr2 180125060 180126069 + 2 NA Intergenic Intergenic -118267 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 297.333-2 chr1 203890014 203890272 + 2 NA Intergenic AluSq2|SINE|Alu 28296 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 394.334 chr10 126090755 126091311 + 2 NA intron (NM_001288974, intron 11 of 18) intron (NM_001288974, intron 11 of 18) -117760 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 351.167-6 chr7 82727715 82727902 + 2 NA Intergenic Intergenic -283852 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 389.334 chr1 88837422 88837723 + 2 NA Intergenic AluJr|SINE|Alu 53995 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 386-7 chr4 88479483 88479683 + 2 NA intron (NM_016323, intron 13 of 22) intron (NM_016323, intron 13 of 22) 22464 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 297.833-6 chr4 142092818 142093231 + 2 NA intron (NM_001331040, intron 23 of 25) MLT1G|LTR|ERVL-MaLR 456441 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 186.5-33 chr8 91905909 91906136 + 2 NA Intergenic Intergenic 111658 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 501.167-4 chr8 123476606 123477235 + 2 NA Intergenic Intergenic 55223 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 178.834-2 chr10 78521203 78521358 + 2 NA Intergenic MIR3|SINE|MIR 253938 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 828.5 chr12 20645985 20646874 + 2 NA intron (NM_000921, intron 10 of 15) intron (NM_000921, intron 10 of 15) -48926 NM_001145945 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 249.5-13 chr3 193615852 193616009 + 2 NA intron (NM_130831, intron 3 of 27) intron (NM_130831, intron 3 of 27) 11402 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 581.333 chr10 17835443 17836023 + 2 NA intron (NM_002438, intron 4 of 29) intron (NM_002438, intron 4 of 29) -9374 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 838.5 chr1 47436213 47437105 + 2 NA 5' UTR (NM_004474, exon 1 of 1) 5' UTR (NM_004474, exon 1 of 1) 642 NM_004474 2306 Hs.166188 NM_004474 ENSG00000186564 FOXD2 FKHL17|FREAC-9|FREAC9 forkhead box D2 protein-coding 285.167-5 chr15 64410286 64410493 + 2 NA intron (NR_135855, intron 7 of 11) intron (NR_135855, intron 7 of 11) 22553 NM_016213 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 335.834-2 chr14 57942263 57942568 + 2 NA Intergenic Intergenic -76323 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 422.833-5 chr20 54515929 54516167 + 2 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 40455 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 381.834-3 chr6 556852 557115 + 2 NA intron (NM_018303, intron 17 of 27) intron (NM_018303, intron 17 of 27) 99981 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 356.5-4 chr13 94044814 94045020 + 2 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) 143074 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 600.167-2 chr1 239405432 239405865 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 19080 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 418.5-6 chr7 112756547 112756849 + 2 NA Intergenic HAL1|LINE|L1 33695 NM_001287497 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 200-47 chr8 132540664 132540812 + 2 NA Intergenic L1MEg|LINE|L1 20741 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 358.667-2 chr11 77241964 77242307 + 2 NA intron (NM_182833, intron 13 of 16) L1MA7|LINE|L1 59531 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 425.501 chr5 174020185 174020631 + 2 NA Intergenic L1PA2|LINE|L1 -25298 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 402.5-5 chr3 58965613 58965885 + 2 NA intron (NR_147234, intron 4 of 10) intron (NR_147234, intron 4 of 10) 84276 NM_001351532 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 273-11 chr17 9371081 9371337 + 2 NA intron (NM_004853, intron 7 of 7) intron (NM_004853, intron 7 of 7) -192091 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 221-5 chr10 120403832 120404059 + 2 NA Intergenic Intergenic -48722 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 592.5 chr1 32447883 32448505 + 2 NA Intergenic HERVIP10FH-int|LTR|ERV1 -16878 NM_001145720 728116 Hs.647658 NM_001145720 ENSG00000273274 ZBTB8B ZNF916B zinc finger and BTB domain containing 8B protein-coding 877.332 chr6 149834497 149835310 + 2 NA intron (NM_032832, intron 5 of 6) L1ME4a|LINE|L1 -28595 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 211.333-55 chr9 113974014 113974121 + 2 NA intron (NM_001318042, intron 2 of 14) L2a|LINE|L2 97758 NM_001318041 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 350.667-17 chr6 8305954 8306131 + 2 NA Intergenic L1MA6|LINE|L1 129503 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 575.333 chr4 85968949 85969453 + 2 NA intron (NM_031305, intron 2 of 6) intron (NM_031305, intron 2 of 6) 39185 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 618.833-2 chr5 6765586 6766069 + 2 NA Intergenic Intergenic -30053 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 385.167-11 chr8 65450542 65450778 + 2 NA Intergenic Intergenic 112006 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 642.001 chr5 135203441 135203927 + 2 NA intron (NR_161235, intron 3 of 5) L1MC4a|LINE|L1 44493 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 393.166-2 chr12 47137199 47137410 + 2 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) -50508 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 325-8 chr2 57910802 57911272 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 3386 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 277.667-16 chr2 134167230 134167380 + 2 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) 40180 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 404-8 chr6 47309373 47309676 + 2 NA 5' UTR (NM_014452, exon 1 of 6) 5' UTR (NM_014452, exon 1 of 6) 381 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 426-12 chr4 62072850 62073196 + 2 NA 3' UTR (NM_001322402, exon 26 of 26) 3' UTR (NM_001322402, exon 26 of 26) 88742 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 313-11 chr6 126796312 126796700 + 2 NA Intergenic Intergenic 311875 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 165-46 chr6 144265216 144265329 + 2 NA Intergenic Intergenic -26465 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 218.333-16 chr20 47329090 47329334 + 2 NA intron (NM_001281774, intron 3 of 23) intron (NM_001281774, intron 3 of 23) 10710 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 350.334-11 chr5 89475946 89476182 + 2 NA Intergenic MIR|SINE|MIR 540656 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 441.5-6 chr4 175946953 175947276 + 2 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) 55577 NM_005277 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 296-4 chr11 68838844 68839075 + 2 NA intron (NM_001031847, intron 1 of 18) intron (NM_001031847, intron 1 of 18) 2957 NM_001876 1374 Hs.503043 NM_001876 ENSG00000110090 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A protein-coding 371-9 chr21 43651395 43651725 + 2 NA intron (NM_007031, intron 3 of 8) intron (NM_007031, intron 3 of 8) 7928 NM_007031 11077 Hs.406157 NM_007031 ENSG00000160207 HSF2BP - heat shock transcription factor 2 binding protein protein-coding 339.333-12 chr3 96541409 96541648 + 2 NA Intergenic L1PA16|LINE|L1 181564 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 439.834-5 chr7 30722312 30722721 + 2 NA Intergenic LTR16C|LTR|ERVL -22413 NM_001202481 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 712.834 chr4 13548849 13549397 + 2 NA Intergenic Intergenic -1299 NR_015450 285548 Hs.529284 NR_015450 LINC01096 - long intergenic non-protein coding RNA 1096 ncRNA 258-7 chr11 60625211 60625559 + 2 NA intron (NR_026946, intron 2 of 6) L1MA9|LINE|L1 9634 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 393.333 chr1 95990504 95990816 + 2 NA Intergenic L2c|LINE|L2 -1408 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 291-8 chr11 11985305 11985517 + 2 NA intron (NM_015881, intron 4 of 7) MIRb|SINE|MIR 23228 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 312.167-8 chr7 101282938 101283409 + 2 NA Intergenic Intergenic -16440 NR_146480 101927721 Hs.148659 NR_146480 ENSG00000232301 LNCPRESS1 - lncRNA p53 regulated and ESC associated 1 ncRNA 211-10 chr11 83024095 83024279 + 2 NA intron (NM_001286060, intron 1 of 4) MIRb|SINE|MIR 10087 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 433.333-3 chr17 81927792 81928053 + 2 NA promoter-TSS (NM_002359) promoter-TSS (NM_002359) 93 NR_015454 92659 Hs.336958 NR_015454 ENSG00000265688 MAFG-DT MAFG-AS1 MAFG divergent transcript ncRNA 380-14 chr5 109888677 109888899 + 2 NA Intergenic Intergenic 5606 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 394-3 chr14 67667294 67667601 + 2 NA intron (NM_006370, intron 1 of 5) MIRb|SINE|MIR 7185 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 279.166-2 chr15 66498971 66499383 + 2 NA 3' UTR (NM_000968, exon 10 of 10) 3' UTR (NM_000968, exon 10 of 10) -1362 NM_001329614 10302 Hs.30174 NM_006049 ENSG00000174446 SNAPC5 SNAP19 small nuclear RNA activating complex polypeptide 5 protein-coding 176.667-54 chr7 104153405 104153521 + 2 NA intron (NM_002553, intron 12 of 13) intron (NM_002553, intron 12 of 13) 54550 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 436.666 chr1 75653589 75654028 + 2 NA Intergenic Intergenic -37645 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 382-3 chr11 29335389 29335616 + 2 NA Intergenic Intergenic -258911 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 356.667-13 chr9 29090614 29090852 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 121566 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 245.5-5 chr1 235128907 235129042 + 2 NA promoter-TSS (NM_014765) promoter-TSS (NM_014765) -137 NM_014765 9804 Hs.533192 NM_014765 ENSG00000173726 TOMM20 MAS20|MOM19|TOM20 translocase of outer mitochondrial membrane 20 protein-coding 224.667-18 chr18 5604756 5604981 + 2 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) 24123 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 579.166 chr9 133185849 133186442 + 2 NA Intergenic L1MB5|LINE|L1 -22231 NM_001288572 26301 Hs.495419 NM_021996 ENSG00000148288 GBGT1 A3GALNT|FS|UNQ2513 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) protein-coding 256.666-7 chr5 36890602 36890831 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 13947 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 374.167 chr11 76444693 76445328 + 2 NA promoter-TSS (NM_001300943) promoter-TSS (NM_001300943) -8 NM_001300942 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 562.334-4 chr7 134646430 134646862 + 2 NA promoter-TSS (NM_199186) promoter-TSS (NM_199186) -133 NM_001293085 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 389.001 chr10 100303545 100303978 + 2 NA intron (NM_016112, intron 2 of 15) intron (NM_016112, intron 2 of 15) -17049 NM_001282439 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 399.999-4 chr7 70389785 70390160 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -742172 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 262-7 chr13 42293928 42294102 + 2 NA intron (NM_016248, intron 4 of 12) MIRb|SINE|MIR 21863 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 778.333 chr1 23098447 23099228 + 2 NA intron (NM_001142546, intron 2 of 3) intron (NM_001142546, intron 2 of 3) 54532 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 474-3 chr10 122140144 122140570 + 2 NA intron (NM_001291876, intron 6 of 19) intron (NM_001291876, intron 6 of 19) -23273 NM_006997 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 349.667-10 chr8 123072530 123072786 + 2 NA promoter-TSS (NM_001145088) promoter-TSS (NM_001145088) -49 NM_001363151 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 350.5-9 chr5 6746640 6747093 + 2 NA intron (NM_001171805, intron 7 of 12) intron (NM_001171805, intron 7 of 12) 33434 NM_006999 11044 Hs.481542 NM_006999 ENSG00000112941 TENT4A LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 terminal nucleotidyltransferase 4A protein-coding 227.5-31 chr6 139764761 139764973 + 2 NA Intergenic Intergenic -6206 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 277.833-15 chr8 133209226 133209530 + 2 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 18339 NM_003882 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 387-20 chr7 115798559 115798824 + 2 NA Intergenic Intergenic 169622 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 469.166-2 chr14 22200863 22201408 + 2 NA Intergenic Intergenic 231618 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 267-20 chr2 6944611 6944826 + 2 NA intron (NM_001349186, intron 2 of 7) intron (NM_001349186, intron 2 of 7) 11634 NR_146069 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4|hUIP4 ring finger protein 144A protein-coding 446.167-2 chr1 232627810 232628198 + 2 NA Intergenic Intergenic -90067 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 691.334-2 chr5 68460129 68460926 + 2 NA Intergenic Intergenic 167950 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 260-21 chr4 99723701 99723904 + 2 NA Intergenic Intergenic -69123 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 315.333-21 chr6 62790505 62790669 + 2 NA Intergenic L1MEc|LINE|L1 -504360 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 293.667-20 chr5 40952791 40953259 + 2 NA intron (NM_000587, intron 9 of 17) MER5A1|DNA|hAT-Charlie 43528 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 615.835 chr3 113838512 113839124 + 2 NA promoter-TSS (NM_017577) promoter-TSS (NM_017577) 30 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 500.833-4 chr8 52008608 52009281 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -109758 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 584.333-2 chr8 65784964 65785575 + 2 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) 3788 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 417.501-2 chr17 29639380 29639839 + 2 NA intron (NM_033389, intron 13 of 14) intron (NM_033389, intron 13 of 14) -18186 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 497-2 chr2 208543986 208544529 + 2 NA intron (NR_136588, intron 1 of 5) intron (NR_136588, intron 1 of 5) 1615 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 176-44 chr9 73569882 73570065 + 2 NA Intergenic Intergenic 418108 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 428-8 chr5 30765146 30765562 + 2 NA Intergenic Intergenic -428332 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 429-9 chr6 12573510 12573845 + 2 NA Intergenic Intergenic 11727 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 370.5-5 chr12 105420604 105420802 + 2 NA Intergenic MIR|SINE|MIR 90012 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 230.666 chr1 50702908 50703114 + 2 NA intron (NM_007051, intron 7 of 18) intron (NM_007051, intron 7 of 18) 257256 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 312.666-7 chr3 122853995 122854290 + 2 NA intron (NM_032839, intron 5 of 8) MER20B|DNA|hAT-Charlie -32371 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 438.5 chr1 48585434 48585676 + 2 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -113347 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 606.166 chr11 58675298 58676385 + 2 NA Intergenic Intergenic 53176 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 350-16 chr6 38350524 38350755 + 2 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -130957 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 231-11 chr14 76173085 76173271 + 2 NA 3' UTR (NM_001322027, exon 4 of 4) 3' UTR (NM_001322027, exon 4 of 4) 18824 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 476-3 chr17 46942297 46943120 + 2 NA TTS (NM_004287) TTS (NM_004287) 19548 NM_001321133 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 476.167-3 chr19 41753857 41754170 + 2 NA Intergenic L1MC4a|LINE|L1 -1517 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 444-2 chr14 57297074 57297356 + 2 NA non-coding (NR_026895, exon 7 of 7) non-coding (NR_026895, exon 7 of 7) 28244 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 318-2 chr10 108896755 108897090 + 2 NA Intergenic Intergenic -827629 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 350.667-5 chr14 24442343 24443099 + 2 NA promoter-TSS (NM_001290293) promoter-TSS (NM_001290293) 80 NM_020195 56948 Hs.643552 NM_020195 ENSG00000100445 SDR39U1 C14orf124|HCDI short chain dehydrogenase/reductase family 39U member 1 protein-coding 225.667-10 chr14 76682080 76682381 + 2 NA Intergenic L1ME3F|LINE|L1 -79238 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 311.333-14 chr20 6126769 6126954 + 2 NA Intergenic Intergenic -3317 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 353-11 chr3 67519319 67519530 + 2 NA intron (NM_001177599, intron 5 of 10) MER6A|DNA|TcMar-Tigger 135190 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 488.834 chr5 179762871 179763293 + 2 NA intron (NM_014757, intron 1 of 4).2 intron (NM_014757, intron 1 of 4).2 30260 NM_014757 9794 Hs.631951 NM_014757 ENSG00000161021 MAML1 Mam-1|Mam1 mastermind like transcriptional coactivator 1 protein-coding 236.667-32 chr7 114556877 114557057 + 2 NA intron (NR_033767, intron 4 of 17) intron (NR_033767, intron 4 of 17) -96378 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 368-11 chr7 81719408 81719781 + 2 NA intron (NM_001010932, intron 10 of 17) MER33|DNA|hAT-Charlie -28188 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 259-18 chr15 94666469 94666666 + 2 NA Intergenic Intergenic -188796 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 270.667-6 chr15 92831882 92832070 + 2 NA Intergenic Intergenic 36492 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 294.834-5 chrX 106952997 106953228 + 2 NA intron (NM_001085354, intron 14 of 16) intron (NM_001085354, intron 14 of 16) 32710 NM_020384 9075 Hs.522746 NM_020384 ENSG00000165376 CLDN2 - claudin 2 protein-coding 259-30 chr4 105744105 105744353 + 2 NA intron (NM_001370181, intron 5 of 11) L1MC4|LINE|L1 33416 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 386.5-4 chr17 62730313 62730577 + 2 NA intron (NM_001288780, intron 7 of 10) intron (NM_001288780, intron 7 of 10) 24239 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 465.5-2 chr17 27353284 27353974 + 2 NA Intergenic CpG 59515 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 482.167-3 chr6 56699293 56699650 + 2 NA intron (NM_001144770, intron 6 of 94) intron (NM_001144770, intron 6 of 94) -56582 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 460.666-2 chr5 15074699 15075112 + 2 NA Intergenic Intergenic 191655 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 295.333-12 chr20 23421529 23421807 + 2 NA promoter-TSS (NM_022080) promoter-TSS (NM_022080) -149 NM_001283026 63908 Hs.269471 NM_022080 ENSG00000125814 NAPB SNAP-BETA|SNAPB NSF attachment protein beta protein-coding 470.167-2 chr11 49995535 49995787 + 2 NA Intergenic LTR25-int|LTR|ERV1 -13126 NM_001005270 283093 Hs.553669 NM_001005270 ENSG00000221954 OR4C12 OR11-259 olfactory receptor family 4 subfamily C member 12 protein-coding 928.667-2 chr6 73129641 73130568 + 2 NA intron (NM_001160132, intron 9 of 13) intron (NM_001160132, intron 9 of 13) 13410 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 648.5 chr3 5426051 5426745 + 2 NA Intergenic Intergenic -176143 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 216-11 chr13 107932564 107932774 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -65173 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 385.333-2 chr13 92390023 92390409 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -38009 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 411.999-2 chr5 167701747 167702113 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -52999 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 304-25 chr4 111058745 111058954 + 2 NA Intergenic Intergenic -198202 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 202.5-14 chr12 3272736 3272937 + 2 NA intron (NM_001168320, intron 2 of 7) intron (NM_001168320, intron 2 of 7) 93286 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 441.667-2 chr17 16014107 16014413 + 2 NA intron (NM_017775, intron 7 of 9) MLT1L|LTR|ERVL-MaLR 14436 NM_001271420 54902 Hs.462316 NM_017775 ENSG00000011295 TTC19 2010204O13Rik|MC3DN2 tetratricopeptide repeat domain 19 protein-coding 330.167-5 chr4 159946431 159946778 + 2 NA Intergenic Intergenic -168820 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 478.333-5 chr8 122078488 122079033 + 2 NA Intergenic Intergenic -437320 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 320.666-8 chr2 217886890 217887143 + 2 NA intron (NM_001308023, intron 9 of 29) intron (NM_001308023, intron 9 of 29) 13612 NR_106867 102465485 NR_106867 ENSG00000275458 MIR6809 hsa-mir-6809 microRNA 6809 ncRNA 268-2 chr1 25673971 25674125 + 2 NA intron (NM_020379, intron 1 of 11) intron (NM_020379, intron 1 of 11) 56580 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 239.167-13 chr14 54503636 54503885 + 2 NA Intergenic MER20|DNA|hAT-Charlie -6146 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 251.333-5 chr10 81073827 81074009 + 2 NA Intergenic L1MC1|LINE|L1 424121 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 405.5-6 chr2 233029728 233030103 + 2 NA Intergenic AluSx|SINE|Alu -2757 NM_005383 4759 Hs.532681 NM_005383 ENSG00000115488 NEU2 SIAL2 neuraminidase 2 protein-coding 407.167-10 chr8 117088129 117088549 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -46656 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 374.167-4 chr18 9944195 9944486 + 2 NA intron (NM_194434, intron 4 of 5) intron (NM_194434, intron 4 of 5) 30324 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 163.5-29 chr20 14558690 14558856 + 2 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 4389 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 167.333-45 chr6 558167 558263 + 2 NA intron (NM_018303, intron 17 of 27) intron (NM_018303, intron 17 of 27) 98749 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 440-6 chr2 64100058 64100427 + 2 NA intron (NM_020651, intron 4 of 6) intron (NM_020651, intron 4 of 6) 44178 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 279.5 chr1 110422992 110423167 + 2 NA Intergenic L1M4|LINE|L1 -15155 NM_006402 10542 Hs.439815 NM_006402 ENSG00000134248 LAMTOR5 HBXIP|XIP late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 protein-coding 592.666-3 chr22 27976818 27977608 + 2 NA TTS (NM_001145418) TTS (NM_001145418) -56601 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 643.667 chr22 29766916 29767331 + 2 NA promoter-TSS (NM_001003692) promoter-TSS (NM_001003692) -112 NM_001318129 55954 Hs.713647 NM_019103 ENSG00000100319 ZMAT5 SNRNP20|U11/U12-20K|ZC3H19 zinc finger matrin-type 5 protein-coding 295-32 chrX 39196821 39197048 + 2 NA Intergenic Intergenic 130428 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 347.834-3 chr2 160501314 160501567 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -7633 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 236.167-12 chr21 27694845 27695094 + 2 NA Intergenic Intergenic -27410 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 733.5 chr5 56200988 56201559 + 2 NA intron (NM_024669, intron 2 of 11) intron (NM_024669, intron 2 of 11) 32057 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 441.166-2 chr11 58525845 58526467 + 2 NA TTS (NM_004811) TTS (NM_004811) -18051 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 407.667-3 chr10 28835625 28835980 + 2 NA Intergenic Intergenic -10606 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 444.333-3 chr10 115432218 115432769 + 2 NA intron (NM_207303, intron 21 of 28) intron (NM_207303, intron 21 of 28) 339128 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 437-2 chr17 52145699 52145999 + 2 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 12865 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 441.333 chr4 112766185 112766617 + 2 NA intron (NM_001354269, intron 1 of 43) intron (NM_001354269, intron 1 of 43) -51596 NM_001354254 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 327.334-6 chr21 18519525 18519745 + 2 NA Intergenic Intergenic -115850 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 421.833-2 chr13 69440381 69440848 + 2 NA Intergenic Intergenic 218268 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 243.333-5 chr10 96664602 96664931 + 2 NA intron (NM_152309, intron 2 of 16) intron (NM_152309, intron 2 of 16) 55748 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 255-39 chr8 89500727 89501088 + 2 NA Intergenic Intergenic 256804 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 717.666 chr2 86808129 86808792 + 2 NA promoter-TSS (NM_001145873) promoter-TSS (NM_001145873) -64 NM_001145873 925 Hs.85258 NM_001768 ENSG00000153563 CD8A CD8|Leu2|p32 CD8a molecule protein-coding 664.333-2 chr12 40107480 40108192 + 2 NA Intergenic Intergenic -1755 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 339.667-18 chr8 138985480 138985666 + 2 NA Intergenic MLT2B3|LTR|ERVL -71532 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 456-9 chr7 31625900 31626190 + 2 NA intron (NM_194300, intron 8 of 12) MER121|DNA|hAT? -60972 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 923.333 chr2 96208362 96209200 + 2 NA promoter-TSS (NM_020151) promoter-TSS (NM_020151) 54 NM_020151 56910 Hs.469331 NM_020151 ENSG00000084090 STARD7 GTT1 StAR related lipid transfer domain containing 7 protein-coding 279.667-10 chr19 12527679 12527955 + 2 NA exon (NM_144976, exon 4 of 4) exon (NM_144976, exon 4 of 4) 23665 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 223-14 chr17 73066840 73067017 + 2 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 25760 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 560.167 chr1 84753484 84754114 + 2 NA Intergenic Intergenic -63331 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 459.5 chr1 227762358 227762838 + 2 NA intron (NR_136657, intron 2 of 3) intron (NR_136657, intron 2 of 3) 26903 NM_001323934 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 540.666-2 chr17 21239921 21240314 + 2 NA 3' UTR (NM_152914, exon 3 of 3) 3' UTR (NM_152914, exon 3 of 3) 13293 NM_152914 256302 Hs.654713 NM_152914 ENSG00000274180 NATD1 C17orf103|Gtlf3b N-acetyltransferase domain containing 1 protein-coding 341.5-3 chr1 118692959 118693378 + 2 NA Intergenic L1MA4|LINE|L1 295175 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 336.834-5 chr3 55169623 55169899 + 2 NA Intergenic Intergenic -8411 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 479.666 chr12 56192739 56193098 + 2 NA Intergenic Intergenic -3435 NM_003075 6601 Hs.236030 NM_003075 ENSG00000139613 SMARCC2 BAF170|CRACC2|CSS8|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 protein-coding 371.667-6 chr5 39106556 39106884 + 2 NA 3' UTR (NM_001349333, exon 20 of 20) 3' UTR (NM_001349333, exon 20 of 20) -32321 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 280-4 chr1 221322924 221323174 + 2 NA Intergenic MER41G|LTR|ERV1 13247 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 333.667-10 chr4 57113416 57113672 + 2 NA intron (NR_034081, intron 1 of 4) L1MA8|LINE|L1 -3159 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 326.666-9 chrX 155228962 155229249 + 2 NA intron (NM_003372, intron 4 of 5) ERVL-E-int|LTR|ERVL 12645 NM_003372 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 403.5-6 chr2 186485360 186485685 + 2 NA promoter-TSS (NM_018471) promoter-TSS (NM_018471) -738 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 366-3 chr13 61954085 61954365 + 2 NA Intergenic Intergenic 75323 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 391.333-3 chr2 98278172 98278380 + 2 NA intron (NM_001345864, intron 16 of 21) LTR1E|LTR|ERV1 -67879 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 246.5-5 chr11 62573860 62574099 + 2 NA promoter-TSS (NM_001404) promoter-TSS (NM_001404) -88 NM_001404 1937 Hs.144835 NM_001404 ENSG00000254772 EEF1G EF1G|GIG35 eukaryotic translation elongation factor 1 gamma protein-coding 354-12 chr3 107846512 107846697 + 2 NA intron (NR_024276, intron 5 of 7) LTR16E1|LTR|ERVL 31464 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 332-15 chr20 10955479 10955734 + 2 NA Intergenic Intergenic -46334 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 320 chr1 30809789 30810089 + 2 NA Intergenic LTR85a|LTR|Gypsy? -14713 NR_146732 105378622 Hs.209284 NR_146732 ENSG00000223382 LINC01778 - long intergenic non-protein coding RNA 1778 ncRNA 415.5-3 chr17 59892788 59893289 + 2 NA promoter-TSS (NM_001272060) promoter-TSS (NM_001272060) -8 NM_001272060 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 361.334-2 chr17 69575344 69575672 + 2 NA Intergenic Intergenic -18479 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 514.667 chr1 225318742 225319119 + 2 NA intron (NM_001367479, intron 61 of 85) MER104|DNA|TcMar-Tc2 109108 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 240-50 chr5 151043745 151043948 + 2 NA intron (NM_001258454, intron 9 of 17) intron (NM_001258454, intron 9 of 17) 21285 NM_001258455 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 278.333-17 chr3 1183683 1183890 + 2 NA intron (NM_001289080, intron 2 of 22) MLT1F2|LTR|ERVL-MaLR 90762 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 295.333-11 chr18 38702561 38702736 + 2 NA Intergenic Intergenic 919527 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 307.167-24 chr6 143326472 143326695 + 2 NA intron (NM_016108, intron 4 of 5) L2b|LINE|L2 116094 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 562.334-2 chr19 51661703 51662250 + 2 NA Intergenic Intergenic -15097 NM_001098612 100049587 Hs.707374 NM_001098612 ENSG00000254415 SIGLEC14 - sialic acid binding Ig like lectin 14 protein-coding 297.5-7 chr12 51216166 51216374 + 2 NA intron (NM_001368008, intron 1 of 2) intron (NM_001368008, intron 1 of 2) 1035 NM_001368008 5463 Hs.555886 NM_002702 ENSG00000184271 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding 598.167 chr1 11907616 11908393 + 2 NA promoter-TSS (NR_002754) promoter-TSS (NR_002754) -150 NR_002754 26829 NR_002754 ENSG00000199347 RNU5E-1 RNU5E|U5E RNA, U5E small nuclear 1 snRNA 360-6 chr16 8277988 8278337 + 2 NA Intergenic Intergenic 311676 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 515.332 chr4 70585053 70585418 + 2 NA Intergenic L1ME4c|LINE|L1 -7021 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 216.167-19 chr18 3177724 3177894 + 2 NA intron (NM_019856, intron 5 of 36) intron (NM_019856, intron 5 of 36) 42159 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 373.167-2 chr1 33055061 33055356 + 2 NA Intergenic LTR78B|LTR|ERV1 -18297 NM_001319140 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 567.333 chr1 51296608 51297259 + 2 NA intron (NM_001080494, intron 12 of 17) intron (NM_001080494, intron 12 of 17) 1028 NM_001297667 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 424.5-5 chr13 45807264 45807751 + 2 NA intron (NM_198849, intron 1 of 1) intron (NM_198849, intron 1 of 1) 44246 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 496.667-3 chr4 141307106 141307607 + 2 NA Intergenic Intergenic 25261 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 720.666 chr1 40315176 40316127 + 2 NA exon (NM_001852, exon 2 of 32) exon (NM_001852, exon 2 of 32) 1635 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 448.667-7 chrX 40794241 40794497 + 2 NA Intergenic L1PB1|LINE|L1 38827 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 884.667-2 chr4 74188678 74189430 + 2 NA intron (NM_001351314, intron 5 of 9) L1ME3F|LINE|L1 30936 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 308-21 chr9 19411498 19411778 + 2 NA intron (NM_001010887, intron 1 of 5) intron (NM_001010887, intron 1 of 5) 2629 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 298.666-8 chr5 154038876 154039174 + 2 NA promoter-TSS (NM_005927) promoter-TSS (NM_005927) 58 NM_005927 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibril associated protein 3 protein-coding 513.001-2 chr3 192570989 192571574 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 56259 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 166.333-4 chr1 151995015 151995186 + 2 NA Intergenic Intergenic -1241 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 330.833-7 chr16 75319944 75320224 + 2 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) -52077 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 274-25 chr5 81523157 81523367 + 2 NA intron (NM_012446, intron 4 of 16) Tigger10|DNA|TcMar-Tigger -129128 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 852.667 chr20 50746241 50747463 + 2 NA intron (NM_032521, intron 2 of 2) intron (NM_032521, intron 2 of 2) 15272 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 173.333-34 chr8 82657278 82657399 + 2 NA Intergenic Tigger9b|DNA|TcMar-Tigger -254766 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 505.834-3 chr12 118375835 118376371 + 2 NA promoter-TSS (NM_022491) promoter-TSS (NM_022491) -452 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 423.333-10 chr6 44253346 44253710 + 2 NA TTS (NM_001286509) TTS (NM_001286509) 757 NR_039790 100616124 NR_039790 ENSG00000284427 MIR4647 mir-4647 microRNA 4647 ncRNA 452.166-2 chr14 20343592 20343965 + 2 NA promoter-TSS (NR_002312) promoter-TSS (NR_002312) 164 NM_005484 10038 Hs.409412 NM_005484 ENSG00000129484 PARP2 ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2 poly(ADP-ribose) polymerase 2 protein-coding 264-20 chr2 79892006 79892161 + 2 NA intron (NM_001282598, intron 6 of 17) intron (NM_001282598, intron 6 of 17) -25500 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 323-5 chr12 11534258 11534468 + 2 NA Intergenic L1MC4a|LINE|L1 -13667 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 357.333-9 chr2 227939669 227939961 + 2 NA Intergenic MER90a|LTR|ERV1 68184 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 468.167 chr5 52490892 52491355 + 2 NA Intergenic Intergenic -296793 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 268.333-9 chr16 53708969 53709178 + 2 NA intron (NM_001363897, intron 1 of 7) L1MB7|LINE|L1 4917 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 305 chr1 94927142 94927317 + 2 NA promoter-TSS (NM_001286055) promoter-TSS (NM_001286055) -6 NM_001286055 1266 Hs.483454 NM_001839 ENSG00000117519 CNN3 - calponin 3 protein-coding 405.5-5 chr2 86620032 86620275 + 2 NA intron (NM_001198952, intron 2 of 2) intron (NM_001198952, intron 2 of 2) 3712 NM_001198952 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 284.666-3 chr2 56101970 56102151 + 2 NA Intergenic Intergenic -11678 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 265-8 chr18 3494183 3494406 + 2 NA Intergenic Intergenic 28044 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 444.5-8 chr5 18666633 18666903 + 2 NA Intergenic Intergenic 859494 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 186-49 chr9 92597506 92597647 + 2 NA intron (NM_001286969, intron 4 of 6) intron (NM_001286969, intron 4 of 6) -2681 NM_001286971 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 282.5-5 chr14 49638545 49638743 + 2 NA Intergenic L2a|LINE|L2 -3414 NM_018139 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 245-25 chr3 106357244 106357397 + 2 NA Intergenic L1PA15|LINE|L1 -487919 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 350.667-10 chr2 171529918 171530186 + 2 NA intron (NM_001127383, intron 1 of 2) MLT1C|LTR|ERVL-MaLR 7578 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 405.5-3 chr14 19879412 19880002 + 2 NA Intergenic Intergenic 3439 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 506-3 chr20 50542658 50542986 + 2 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 32439 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 409.834 chr6 2738156 2738537 + 2 NA intron (NM_001012418, intron 2 of 12) intron (NM_001012418, intron 2 of 12) 12576 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 670.833 chr1 91278704 91279387 + 2 NA intron (NM_001017975, intron 30 of 38) MER90a|LTR|ERV1 125792 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 254.666-6 chr3 61137958 61138167 + 2 NA intron (NR_148922, intron 2 of 3) MIR|SINE|MIR 113390 NM_001354589 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 432-4 chr3 59443515 59443836 + 2 NA Intergenic MER33|DNA|hAT-Charlie 214822 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 224.5-17 chr18 32267102 32267346 + 2 NA 3' UTR (NM_022751, exon 6 of 6) 3' UTR (NM_022751, exon 6 of 6) 77185 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 287-22 chr3 117526658 117526860 + 2 NA Intergenic Intergenic 164166 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 430.334-2 chr17 27384179 27384599 + 2 NA Intergenic Intergenic -33616 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 425-2 chr1 182782464 182782770 + 2 NA Intergenic Intergenic -6832 NM_030769 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 348.666-3 chr11 46416221 46416532 + 2 NA intron (NR_160027, intron 15 of 18) intron (NR_160027, intron 15 of 18) -24708 NM_001366692 1132 Hs.248100 NM_000741 ENSG00000180720 CHRM4 HM4|M4R cholinergic receptor muscarinic 4 protein-coding 261.333-10 chr3 94204098 94204521 + 2 NA Intergenic L1MA8|LINE|L1 141248 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 548.167 chr12 55995849 55996341 + 2 NA 3' UTR (NM_001252037, exon 5 of 5) 3' UTR (NM_001252037, exon 5 of 5) -1181 NM_000456 6821 Hs.558403 NM_000456 ENSG00000139531 SUOX - sulfite oxidase protein-coding 244.667-5 chr1 227623658 227624126 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 60336 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 364.5-2 chr1 66253264 66253554 + 2 NA intron (NM_001037340, intron 2 of 14) intron (NM_001037340, intron 2 of 14) -78699 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 600-2 chr10 90089393 90089968 + 2 NA Intergenic MER4-int|LTR|ERV1 -132307 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 426.666-5 chr8 109974195 109974793 + 2 NA 5' UTR (NM_014379, exon 2 of 4) 5' UTR (NM_014379, exon 2 of 4) 1277 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 716.999 chr1 86508222 86508760 + 2 NA Intergenic Intergenic -38587 NR_024602 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 291.5-31 chr6 99511885 99512081 + 2 NA intron (NR_144348, intron 1 of 12) L1MC5a|LINE|L1 3393 NM_001346033 85015 Hs.143410 NM_032929 ENSG00000123552 USP45 - ubiquitin specific peptidase 45 protein-coding 533.667-5 chr9 129625713 129626375 + 2 NA promoter-TSS (NM_001286803) promoter-TSS (NM_001286803) -109 NM_001286803 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 381.333-3 chr17 66132578 66132976 + 2 NA intron (NM_001353129, intron 4 of 26) intron (NM_001353129, intron 4 of 26) 59115 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 310.666-2 chr13 113892303 113892533 + 2 NA Intergenic L1MC2|LINE|L1 -2685 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 319-14 chr6 88849867 88850184 + 2 NA intron (NM_001286428, intron 8 of 13) intron (NM_001286428, intron 8 of 13) 113593 NM_001286428 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 370-5 chr17 75747488 75748050 + 2 NA intron (NM_001005619, intron 25 of 38) AluSx1|SINE|Alu 17423 NM_000154 2584 Hs.407966 NM_000154 ENSG00000108479 GALK1 GALK|GK1|HEL-S-19 galactokinase 1 protein-coding 542-3 chr3 69690797 69691714 + 2 NA Intergenic Intergenic -48209 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 376-11 chr8 104511657 104511992 + 2 NA intron (NM_001135703, intron 1 of 5) intron (NM_001135703, intron 1 of 5) -27359 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 274-13 chr16 65346867 65347022 + 2 NA intron (NR_027755, intron 7 of 8) L3|LINE|CR1 -170371 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 290-6 chr13 32537314 32537562 + 2 NA intron (NM_033111, intron 1 of 9) intron (NM_033111, intron 1 of 9) 1357 NM_014887 10443 Hs.507680 NM_014887 ENSG00000244754 N4BP2L2 92M18.3|CG005|CG016|PFAAP5 NEDD4 binding protein 2 like 2 protein-coding 536.167-2 chr14 33474328 33474835 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -234356 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 283.333-6 chr12 2812331 2812530 + 2 NA promoter-TSS (NR_147202) promoter-TSS (NR_147202) -238 NR_130744 55846 Hs.239 NM_018463 ENSG00000111203 ITFG2 FGGAP1|MDS028 integrin alpha FG-GAP repeat containing 2 protein-coding 207.167-18 chr4 67918228 67918653 + 2 NA intron (NM_001114387, intron 8 of 9) intron (NM_001114387, intron 8 of 9) -34438 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 420.5-10 chr8 70787073 70787368 + 2 NA Intergenic Intergenic 117881 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 283.333-3 chr11 32669292 32669532 + 2 NA intron (NM_001008391, intron 9 of 17) L1MA2|LINE|L1 85581 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 399.499 chr10 50990378 50990786 + 2 NA promoter-TSS (NM_001098512) promoter-TSS (NM_001098512) -306 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 294.834 chr1 178123194 178123525 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 29255 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 291.5-27 chr4 184711426 184711707 + 2 NA intron (NR_104593, intron 7 of 11) L1MA6|LINE|L1 22530 NM_024629 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 362-8 chr11 90205284 90205637 + 2 NA exon (NM_001144073, exon 7 of 10) exon (NM_001144073, exon 7 of 10) 17589 NM_012124 26973 Hs.22857 NM_012124 ENSG00000110172 CHORDC1 CHP1 cysteine and histidine rich domain containing 1 protein-coding 417.333-9 chr6 87654308 87654695 + 2 NA intron (NM_012381, intron 14 of 19) MIR3|SINE|MIR 47732 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 339.667-6 chr12 110518630 110518833 + 2 NA exon (NM_001286535, exon 7 of 11) exon (NM_001286535, exon 7 of 11) 16400 NM_001286534 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 checkpoint clamp component B protein-coding 337-4 chr15 26891505 26891774 + 2 NA intron (NM_001165037, intron 6 of 10) intron (NM_001165037, intron 6 of 10) 24513 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 328.667-11 chr20 63614168 63614343 + 2 NA intron (NM_012384, intron 2 of 9) LTR13|LTR|ERVK 12846 NM_012384 26205 Hs.473286 NM_012384 ENSG00000101216 GMEB2 GMEB-2|P79PIF|PIF79 glucocorticoid modulatory element binding protein 2 protein-coding 222-26 chr7 12140256 12140481 + 2 NA Intergenic Intergenic -70926 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 234-2 chr1 91932372 91932625 + 2 NA Intergenic L1M5|LINE|L1 -16873 NM_001242810 676 Hs.482520 NM_001726 ENSG00000137948 BRDT BRD6|CT9|SPGF21 bromodomain testis associated protein-coding 507.166-3 chr5 96226788 96227418 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 147965 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 740.834 chr14 38721430 38722080 + 2 NA Intergenic Intergenic -160841 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 282.667-8 chr11 59990216 59990408 + 2 NA intron (NR_130719, intron 8 of 8) L1MA2|LINE|L1 -33491 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 184-14 chr11 41879222 41879358 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 164722 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 250.5-9 chr12 62480892 62481028 + 2 NA intron (NM_001278472, intron 2 of 35) intron (NM_001278472, intron 2 of 35) 14134 NM_001278469 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 1133.33 chr7 6080960 6082084 + 2 NA Intergenic CpG -22293 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 253-29 chr7 111486525 111487191 + 2 NA intron (NM_001350964, intron 4 of 4) intron (NM_001350964, intron 4 of 4) 75433 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 447-3 chr15 23467173 23467449 + 2 NA Intergenic Intergenic -20068 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 707.5 chr11 46537641 46538253 + 2 NA intron (NM_001267782, intron 8 of 19) intron (NM_001267782, intron 8 of 19) 49497 NR_160027 55626 Hs.654644 NM_017749 ENSG00000110497 AMBRA1 DCAF3|WDR94 autophagy and beclin 1 regulator 1 protein-coding 270.333 chr10 75111283 75111432 + 2 NA promoter-TSS (NM_144660) promoter-TSS (NM_144660) -299 NM_001174156 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 805.499 chr8 43093133 43093993 + 2 NA promoter-TSS (NM_001277971) promoter-TSS (NM_001277971) 48 NM_032237 84197 Hs.491646 NM_032237 ENSG00000185900 POMK MDDGA12|MDDGC12|SGK196 protein O-mannose kinase protein-coding 217.5-10 chr19 54019670 54019845 + 2 NA Intergenic AluJr|SINE|Alu 27469 NM_145815 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium voltage-gated channel auxiliary subunit gamma 6 protein-coding 463-4 chr3 152467895 152468259 + 2 NA Intergenic Intergenic -127087 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 610 chr13 39016603 39017008 + 2 NA intron (NM_170719, intron 9 of 11) intron (NM_170719, intron 9 of 11) 21271 NM_170719 80209 Hs.318526 NM_025138 ENSG00000120685 PROSER1 C13orf23 proline and serine rich 1 protein-coding 369-6 chr16 2335650 2335898 + 2 NA intron (NM_001089, intron 1 of 32) intron (NM_001089, intron 1 of 32) 4954 NM_001089 21 Hs.26630 NM_001089 ENSG00000167972 ABCA3 ABC-C|ABC3|EST111653|LBM180|SMDP3 ATP binding cassette subfamily A member 3 protein-coding 437.5-2 chr12 52272674 52273071 + 2 NA Intergenic L1ME3D|LINE|L1 -1773 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 248.333-15 chr2 50499015 50499221 + 2 NA intron (NM_001330093, intron 13 of 22) intron (NM_001330093, intron 13 of 22) -151362 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 246.667-16 chr4 66172901 66173104 + 2 NA Intergenic L1MA6|LINE|L1 -103822 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 212-31 chr22 32612663 32612867 + 2 NA intron (NM_003490, intron 6 of 13) AluJr|SINE|Alu 137528 NM_001257990 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 312.833-5 chr2 208263943 208264283 + 2 NA Intergenic L1MC4|LINE|L1 -2142 NM_015040 200576 Hs.744997 NM_015040 ENSG00000115020 PIKFYVE CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29 phosphoinositide kinase, FYVE-type zinc finger containing protein-coding 194-2 chr1 101674629 101674861 + 2 NA Intergenic L1M5|LINE|L1 172335 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 380.5-5 chr14 21595571 21595888 + 2 NA Intergenic L1MA4|LINE|L1 -24985 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 477.167-2 chr11 72482189 72482719 + 2 NA Intergenic Intergenic -47770 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 470.833-5 chr17 61635113 61635515 + 2 NA Intergenic L1MA4|LINE|L1 -44095 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 177-18 chr16 55500059 55500276 + 2 NA intron (NM_001127891, intron 11 of 12) intron (NM_001127891, intron 11 of 12) -8905 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 185.5 chr1 37775962 37776164 + 2 NA Intergenic AluSp|SINE|Alu -10911 NM_173641 284656 Hs.129435 NM_173641 ENSG00000183317 EPHA10 - EPH receptor A10 protein-coding 424.5-8 chr15 79028089 79028491 + 2 NA intron (NM_001145648, intron 8 of 26) L2a|LINE|L2 -22630 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 458.001-6 chr5 132737314 132737662 + 2 NA promoter-TSS (NM_001300791) promoter-TSS (NM_001300791) 58 NM_007054 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 422.667-2 chr10 52906005 52906289 + 2 NA Intergenic Intergenic -134447 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 298.167-6 chr18 43780688 43781070 + 2 NA Intergenic Intergenic -503389 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 501.167-3 chr11 57667705 57668092 + 2 NA promoter-TSS (NM_015457) promoter-TSS (NM_015457) -216 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 562.167-2 chr8 70534333 70534917 + 2 NA Intergenic MIRb|SINE|MIR 63491 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 611.834-2 chr22 32659865 32660376 + 2 NA intron (NM_003490, intron 6 of 13) L2c|LINE|L2 -140696 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 345-7 chr16 56481151 56481528 + 2 NA Intergenic Intergenic 29255 NM_001324358 55239 Hs.231883 NM_018233 ENSG00000087263 OGFOD1 TPA1 2-oxoglutarate and iron dependent oxygenase domain containing 1 protein-coding 287.5-11 chr2 46578024 46578186 + 2 NA intron (NM_012249, intron 4 of 4) L1M5|LINE|L1 2133 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 412.5-2 chr3 71930098 71930712 + 2 NA Intergenic Intergenic -145257 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 285.833-16 chr6 124870036 124870339 + 2 NA Intergenic Intergenic -92358 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 342.5-7 chr2 102221857 102222196 + 2 NA intron (NM_001351447, intron 6 of 9) L1ME3B|LINE|L1 34712 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 316.167-13 chr20 57642699 57643017 + 2 NA Intergenic L1MC3|LINE|L1 -22432 NR_136660 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 278.834-10 chr6 28176863 28177108 + 2 NA Intergenic Intergenic 15224 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 453.334-2 chr6 91429086 91429346 + 2 NA Intergenic L1MD1|LINE|L1 -92444 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 622.666-2 chr8 13727491 13728246 + 2 NA Intergenic Intergenic 98178 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 197-27 chr5 28523308 28523523 + 2 NA Intergenic Intergenic -235750 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 229-15 chr22 40024955 40025203 + 2 NA intron (NM_138435, intron 4 of 4) intron (NM_138435, intron 4 of 4) 19451 NR_163486 114841040 Hs.474880 NR_163486 LOC114841040 - uncharacterized LOC114841040 ncRNA 298.5-10 chr14 75560896 75561207 + 2 NA Intergenic MIRb|SINE|MIR -17569 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 446.167-4 chr13 107373271 107373660 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -52502 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 415.333-2 chr13 94250894 94251151 + 2 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -63031 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 493.5-6 chr6 100107210 100107659 + 2 NA Intergenic Intergenic -113196 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 252-18 chr13 69300904 69301152 + 2 NA intron (NR_125752, intron 2 of 3) THE1C|LTR|ERVL-MaLR 78682 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 376-8 chr4 73090478 73090865 + 2 NA exon (NM_015574, exon 29 of 34) exon (NM_015574, exon 29 of 34) -20912 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 412.334 chr15 70333881 70334137 + 2 NA Intergenic L1ME2|LINE|L1 171919 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 443.833 chr15 75202703 75203197 + 2 NA intron (NM_015492, intron 1 of 2) CpG 1068 NM_015492 56905 Hs.17936 NM_015492 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 191.833-28 chrX 131711112 131711258 + 2 NA intron (NR_026975, intron 11 of 12) intron (NR_026975, intron 11 of 12) 119458 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 564.167-2 chr15 42056888 42057440 + 2 NA Intergenic Intergenic -6461 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 223.333-50 chr9 92957321 92957619 + 2 NA intron (NM_001083536, intron 1 of 17) L1ME2|LINE|L1 -6491 NM_001286993 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 415.333 chr1 211290268 211290628 + 2 NA intron (NM_018254, intron 7 of 10) intron (NM_018254, intron 7 of 10) 30501 NM_018254 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 285.833-6 chr14 80148034 80148176 + 2 NA Intergenic Intergenic -63314 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 353.167-2 chr17 411980 412378 + 2 NA intron (NM_001013672, intron 1 of 1) AluSg7|SINE|Alu 1844 NR_136407 105371430 Hs.616427 NR_136407 ENSG00000241525 LOC105371430 - uncharacterized LOC105371430 ncRNA 434 chr1 113673320 113673717 + 2 NA intron (NM_001142782, intron 19 of 20) intron (NM_001142782, intron 19 of 20) 85637 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 414.834-2 chr11 23902378 23902887 + 2 NA Intergenic MIRb|SINE|MIR -483442 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 400.667 chr11 44238581 44238826 + 2 NA intron (NM_207122, intron 13 of 13) L2c|LINE|L2 71436 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 934.5-2 chr12 7113085 7113727 + 2 NA intron (NR_026947, intron 6 of 11) intron (NR_026947, intron 6 of 11) -4192 NM_001297643 51279 Hs.631730 NM_016546 ENSG00000139178 C1RL C1RL1|C1RLP|C1r-LP|CLSPa complement C1r subcomponent like protein-coding 213.5-13 chr2 46573681 46573861 + 2 NA intron (NR_104182, intron 1 of 1) intron (NR_104182, intron 1 of 1) 6467 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 299.333-11 chr17 9528835 9529247 + 2 NA intron (NR_033656, intron 2 of 5) intron (NR_033656, intron 2 of 5) 46779 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 248.667-7 chr11 56584162 56584356 + 2 NA Intergenic L1ME2|LINE|L1 -6538 NM_001004741 390167 Hs.553750 NM_001004741 ENSG00000254834 OR5M10 OR11-207 olfactory receptor family 5 subfamily M member 10 protein-coding 663.001 chr12 27703421 27704092 + 2 NA Intergenic Intergenic -7017 NM_001190864 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding 334 chr1 94423323 94423547 + 2 NA intron (NM_002858, intron 1 of 22) LTR85b|LTR|Gypsy? 5046 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 596.666 chr3 56995161 56995651 + 2 NA intron (NM_001128615, intron 2 of 12) intron (NM_001128615, intron 2 of 12) 55366 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 245.833-14 chr17 81703105 81703404 + 2 NA promoter-TSS (NM_002949) promoter-TSS (NM_002949) -113 NM_002949 6182 Hs.109059 NM_002949 ENSG00000262814 MRPL12 5c5-2|L12mt|MRP-L31/34|MRPL7|MRPL7/L12|RPML12 mitochondrial ribosomal protein L12 protein-coding 459.667-6 chr8 136070923 136071193 + 2 NA Intergenic Intergenic -459740 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 359.001-6 chr8 74110837 74111134 + 2 NA Intergenic Intergenic 119593 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 261.167-15 chr4 15396380 15396645 + 2 NA intron (NM_001135171, intron 1 of 2) intron (NM_001135171, intron 1 of 2) 21961 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 970.666 chr2 11784368 11785674 + 2 NA exon (NM_001349206, exon 10 of 21) exon (NM_001349206, exon 10 of 21) 17577 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 440.834-3 chr2 165016924 165017428 + 2 NA Intergenic Intergenic -61651 NM_001351540 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 215-19 chr2 71973504 71973723 + 2 NA Intergenic LTR33|LTR|ERVL 174249 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 760.166 chr19 47427053 47427982 + 2 NA TTS (NM_015063) TTS (NM_015063) -5284 NM_001346148 56917 Hs.380923 NM_020160 ENSG00000105419 MEIS3 MRG2 Meis homeobox 3 protein-coding 527.833-2 chr5 28710105 28710607 + 2 NA Intergenic Intergenic -216514 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 190-2 chr1 67791716 67791891 + 2 NA intron (NM_018841, intron 1 of 3) L2a|LINE|L2 -40485 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 479.333 chr1 211514128 211514445 + 2 NA Intergenic Intergenic -21369 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 531 chr13 99505988 99506412 + 2 NA intron (NM_004800, intron 1 of 16) intron (NM_004800, intron 1 of 16) 4728 NM_004800 9375 Hs.607896 NM_004800 ENSG00000125304 TM9SF2 P76 transmembrane 9 superfamily member 2 protein-coding 275-6 chr10 110609878 110610113 + 2 NA Intergenic Intergenic -34341 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 184.333-39 chr7 158704934 158705056 + 2 NA promoter-TSS (NM_001281933) promoter-TSS (NM_001281933) -191 NR_104054 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 432.667-5 chr20 33653460 33653701 + 2 NA Intergenic Intergenic -8747 NM_080825 128864 Hs.324104 NM_080825 ENSG00000149609 C20orf144 dJ63M2.6 chromosome 20 open reading frame 144 protein-coding 349.334-2 chr11 6737997 6738297 + 2 NA Intergenic Intergenic -16268 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 709.334 chr17 13594663 13595369 + 2 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) 6913 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 268 chr1 3410266 3410568 + 2 NA intron (NM_022114, intron 8 of 16) intron (NM_022114, intron 8 of 16) -44248 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 232.167-7 chr12 106282202 106282827 + 2 NA Intergenic Tigger16a|DNA|TcMar-Tigger -20219 NM_152772 255394 Hs.696047 NM_152772 ENSG00000166046 TCP11L2 - t-complex 11 like 2 protein-coding 186-15 chr17 66110476 66110582 + 2 NA intron (NM_001353129, intron 6 of 26) L1MC4|LINE|L1 81363 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 228.834-3 chr13 29156987 29157157 + 2 NA intron (NM_001033602, intron 3 of 13) L1ME3C|LINE|L1 132615 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 607-2 chr6 53651583 53652172 + 2 NA exon (NM_001003760, exon 3 of 3) exon (NM_001003760, exon 3 of 3) 13879 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 346-10 chr8 123103025 123103300 + 2 NA intron (NM_001363149, intron 7 of 21) Tigger17a|DNA|TcMar-Tigger 29913 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 244-20 chr20 62240928 62241145 + 2 NA intron (NM_001363878, intron 1 of 14) intron (NM_001363878, intron 1 of 14) 2515 NM_001363878 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 334-16 chr9 23878220 23878552 + 2 NA Intergenic L1ME4b|LINE|L1 -27785 NM_001351462 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 250-24 chr3 113895442 113895618 + 2 NA intron (NM_017577, intron 6 of 17) intron (NM_017577, intron 6 of 17) -1970 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 305.834 chr1 150431750 150431984 + 2 NA intron (NM_015203, intron 2 of 10) L1MB3|LINE|L1 -55552 NM_001271896 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 465.833-3 chr15 81889235 81889710 + 2 NA Intergenic Intergenic 156546 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 348-5 chr19 49264290 49264548 + 2 NA Intergenic L1MEc|LINE|L1 44449 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 402.167-6 chr2 231558051 231558498 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -27829 NM_006056 10316 Hs.471619 NM_006056 ENSG00000171596 NMUR1 (FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R neuromedin U receptor 1 protein-coding 324.5-12 chr7 4559836 4560303 + 2 NA Intergenic L1ME4a|LINE|L1 -122226 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 380-3 chr1 241500149 241500438 + 2 NA intron (NM_000143, intron 9 of 9) intron (NM_000143, intron 9 of 9) 19492 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 578.834 chr6 116969310 116969954 + 2 NA Intergenic Intergenic 92390 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 319.333-15 chr7 73851356 73851653 + 2 NA Intergenic Intergenic -8988 NM_152559 155368 Hs.647042 NM_152559 ENSG00000165171 METTL27 WBSCR27 methyltransferase like 27 protein-coding 533.499-2 chr4 53092928 53093672 + 2 NA intron (NM_152540, intron 5 of 8) L2a|LINE|L2 230983 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 525.833 chr14 59751242 59751728 + 2 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) -104465 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 375.333-13 chr9 29506567 29506958 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -293161 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 375.333-6 chr2 103359415 103359763 + 2 NA Intergenic L1MC4|LINE|L1 -375160 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 215-16 chr16 77224229 77224348 + 2 NA Intergenic Intergenic 24880 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 305-20 chr8 79642610 79642875 + 2 NA intron (NM_007029, intron 3 of 4) intron (NM_007029, intron 3 of 4) 31625 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 331.333-10 chr7 3155067 3155489 + 2 NA intron (NR_126024, intron 2 of 3) AluJr|SINE|Alu 3295 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 490.667 chr1 232769433 232769887 + 2 NA Intergenic Intergenic -26945 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 309.333 chr1 42753327 42753572 + 2 NA intron (NM_001243246, intron 8 of 13) intron (NM_001243246, intron 8 of 13) -13195 NM_001185117 149461 Hs.496270 NM_148960 ENSG00000164007 CLDN19 HOMG5 claudin 19 protein-coding 274-44 chr9 131747338 131747520 + 2 NA Intergenic Intergenic -7485 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 327.5-9 chr15 57865621 57865894 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 148266 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 203-14 chr18 2952995 2953244 + 2 NA intron (NM_014646, intron 3 of 19) intron (NM_014646, intron 3 of 19) -6496 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 267.667-19 chrX 135114931 135115064 + 2 NA Intergenic Intergenic 5529 NM_001355519 100129515 Hs.522790 NM_001355519 ENSG00000224107 ETDB ETDA|LINC00633 embryonic testis differentiation homolog B protein-coding 190 chr1 56140057 56140349 + 2 NA Intergenic Intergenic 195116 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 428.667-10 chr6 138984673 138984963 + 2 NA intron (NM_031922, intron 1 of 19) intron (NM_031922, intron 1 of 19) 3443 NM_001128617 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 415-7 chr4 86368776 86369160 + 2 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 1899 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 359.001-2 chr10 100185909 100186369 + 2 NA promoter-TSS (NM_001347856) promoter-TSS (NM_001347856) -110 NR_144760 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 374.001-4 chr6 56749731 56749944 + 2 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 93828 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 347.334-7 chr5 32405282 32405591 + 2 NA intron (NM_016107, intron 6 of 19) intron (NM_016107, intron 6 of 19) -10961 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 310.5-2 chr1 187169193 187169416 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 76462 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 835.667-3 chr5 161543689 161544499 + 2 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 4030 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 523.167 chr1 226662928 226663214 + 2 NA intron (NR_103784, intron 1 of 1) intron (NR_103784, intron 1 of 1) 11997 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 ncRNA 202-5 chr10 35377068 35377245 + 2 NA intron (NM_001282852, intron 1 of 8) Tigger3c|DNA|TcMar-Tigger 40282 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 216-4 chr1 157864454 157864574 + 2 NA Intergenic L1M5|LINE|L1 -22706 NM_005894 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 866-2 chr2 200963284 200964041 + 2 NA promoter-TSS (NM_006190) promoter-TSS (NM_006190) -2 NM_006190 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 428-3 chr11 120344318 120344575 + 2 NA intron (NM_015313, intron 1 of 40) intron (NM_015313, intron 1 of 40) 8033 NM_015313 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 287-28 chr8 68778082 68778341 + 2 NA intron (NR_146187, intron 11 of 13) (TCTTTTT)n|Simple_repeat|Simple_repeat 325979 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 417.167-10 chr9 104230196 104230641 + 2 NA Intergenic Intergenic -39811 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 411.667-12 chr9 82643114 82643383 + 2 NA Intergenic L1MA4A|LINE|L1 419894 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 402-4 chr15 68372473 68372779 + 2 NA intron (NM_001004439, intron 2 of 29) intron (NM_001004439, intron 2 of 29) 59537 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 370.5-7 chr15 85730170 85730519 + 2 NA intron (NM_007200, intron 29 of 36) intron (NM_007200, intron 29 of 36) 28381 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 396.334-3 chr16 81940945 81941286 + 2 NA intron (NM_002661, intron 30 of 32) intron (NM_002661, intron 30 of 32) 70355 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 263.333-26 chr8 50661684 50661921 + 2 NA intron (NR_135797, intron 17 of 20) intron (NR_135797, intron 17 of 20) 497671 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 431-12 chr7 149145503 149145881 + 2 NA intron (NM_020781, intron 2 of 6) LTR26D|LTR|ERV1 -1761 NM_170686 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 315.333-16 chr4 17324527 17324797 + 2 NA Intergenic MIR3|SINE|MIR -3780 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 429-11 chr8 65761814 65762061 + 2 NA intron (NM_001242318, intron 3 of 12) intron (NM_001242318, intron 3 of 12) 27120 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 344-22 chr9 109793372 109793732 + 2 NA intron (NM_053016, intron 1 of 6) (TTTG)n|Simple_repeat|Simple_repeat 13354 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 218.5-26 chr4 60802722 60802894 + 2 NA Intergenic Intergenic -119811 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 340.666 chr10 15167001 15167308 + 2 NA intron (NM_001308295, intron 1 of 12) intron (NM_001308295, intron 1 of 12) 1539 NM_001308295 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 467.5-3 chr20 43457576 43457866 + 2 NA promoter-TSS (NR_034009) promoter-TSS (NR_034009) -175 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 523.333-4 chr3 132722911 132723358 + 2 NA promoter-TSS (NM_153240) promoter-TSS (NM_153240) -675 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 405-6 chr15 92302686 92303072 + 2 NA Intergenic Intergenic -91002 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 357-7 chr2 32165299 32165845 + 2 NA promoter-TSS (NM_017964) promoter-TSS (NM_017964) -269 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 347.333-4 chr11 30315984 30316241 + 2 NA Intergenic MIRb|SINE|MIR -6992 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 683.833-2 chr3 129316545 129316952 + 2 NA promoter-TSS (NM_006026) promoter-TSS (NM_006026) -462 NM_006026 8971 Hs.75307 NM_006026 ENSG00000184897 H1FX H1.10|H1X H1 histone family member X protein-coding 265.833-7 chr14 47556211 47556691 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 118503 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 205.667-3 chr10 32948347 32948528 + 2 NA intron (NM_002211, intron 1 of 15) intron (NM_002211, intron 1 of 15) 9457 NM_133376 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 287.333-22 chr8 142717357 142717642 + 2 NA intron (NR_038925, intron 1 of 2) L1MEg|LINE|L1 9474 NR_038925 100288181 Hs.716823 NR_038925 ENSG00000253741 LNCOC1 Lnc-OC1 lncRNA associated with ovarian cancer 1 ncRNA 255-5 chr1 218830169 218830396 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 88229 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 380-7 chr13 94249589 94249953 + 2 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -61780 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 385.333-5 chr22 30196159 30196453 + 2 NA Intergenic Intergenic -42888 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 407.001-5 chr5 73601777 73602062 + 2 NA Intergenic L1MC2|LINE|L1 -24239 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 185.333-16 chr16 13412908 13413000 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -507203 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 288.167-9 chr14 88005106 88005323 + 2 NA promoter-TSS (NM_003608) promoter-TSS (NM_003608) 79 NM_003608 8477 Hs.443243 NM_003608 ENSG00000140030 GPR65 TDAG8|hTDAG8 G protein-coupled receptor 65 protein-coding 273.834-3 chr14 55794775 55795023 + 2 NA intron (NR_026796, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR 1775 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 175.667-55 chr9 37582493 37582771 + 2 NA Intergenic Intergenic -6252 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 332.666 chr1 233412431 233412824 + 2 NA Intergenic Intergenic 84903 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 550.666 chr11 10323148 10323604 + 2 NA intron (NR_103765, intron 1 of 3) intron (NR_103765, intron 1 of 3) 15063 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 362.167-13 chr5 43390576 43390902 + 2 NA intron (NM_001301874, intron 1 of 3) intron (NM_001301874, intron 1 of 3) 6398 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 264.667-13 chr4 98937891 98938133 + 2 NA Intergenic Intergenic -7375 NM_001968 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 214-51 chr8 114372707 114372976 + 2 NA Intergenic MLT2B4|LTR|ERVL -935902 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 835.833 chr5 170225603 170226467 + 2 NA Intergenic Intergenic -6950 NR_161261 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 282.667-16 chr2 201280791 201281028 + 2 NA intron (NR_111983, intron 7 of 8) HAL1|LINE|L1 20373 NM_033356 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 519.5 chr10 64847082 64847436 + 2 NA Intergenic Intergenic 21731 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 315.999-3 chr6 96898978 96899220 + 2 NA 5' UTR (NM_001323258, exon 1 of 8) 5' UTR (NM_001323258, exon 1 of 8) 1016 NM_001323258 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 456.667 chr17 61020433 61020737 + 2 NA intron (NM_001320470, intron 16 of 25) intron (NM_001320470, intron 16 of 25) 342734 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 316.5-25 chr9 105159819 105160166 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -84613 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 305-19 chr8 19393231 19393466 + 2 NA exon (NM_001174160, exon 8 of 9) exon (NM_001174160, exon 8 of 9) 79372 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 526-2 chr6 144931600 144931964 + 2 NA Intergenic Intergenic 526127 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 281.5-12 chr3 49703384 49703657 + 2 NA non-coding (NR_135218, exon 21 of 39) non-coding (NR_135218, exon 21 of 39) 13963 NR_135218 63891 Hs.553723 NM_022064 ENSG00000164068 RNF123 FP1477|KPC1 ring finger protein 123 protein-coding 207.667-11 chr12 71397535 71397911 + 2 NA Intergenic Intergenic -42075 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 191.5-29 chr21 24367543 24368009 + 2 NA Intergenic Intergenic -46399 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 181-18 chr16 72475588 72475901 + 2 NA intron (NR_159371, intron 3 of 5) L2a|LINE|L2 189226 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 420-11 chr9 131168316 131168710 + 2 NA intron (NM_001318324, intron 21 of 35) L1ME1|LINE|L1 -21626 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 420-6 chr18 48372199 48372507 + 2 NA intron (NM_001371291, intron 1 of 6) intron (NM_001371291, intron 1 of 6) 3274 NM_001371291 364.667-2 chr1 115212340 115212650 + 2 NA Intergenic Intergenic -70539 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 412.166 chr11 76822847 76823200 + 2 NA Intergenic L1MD2|LINE|L1 31271 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 312.167-5 chr20 47528347 47528745 + 2 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 26659 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 368-9 chr7 34091236 34091459 + 2 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 185808 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 165-50 chr7 38331585 38331735 + 2 NA Intergenic MER53|DNA|hAT -9917 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 225.667-11 chr14 87074882 87075009 + 2 NA Intergenic Intergenic 169167 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 263.333-15 chr2 240832448 240832620 + 2 NA Intergenic CpG -12226 NM_004321 547 Hs.516802 NM_004321 ENSG00000130294 KIF1A ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104 kinesin family member 1A protein-coding 253.5-3 chr10 12981695 12981868 + 2 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 19932 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 569.5-2 chr2 17470321 17471285 + 2 NA Intergenic L1M3f|LINE|L1 47637 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 225.833-21 chr5 111346266 111346418 + 2 NA intron (NM_001323376, intron 2 of 8) MADE2|DNA|TcMar-Mariner 121958 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 230.167-4 chr1 158560314 158560535 + 2 NA Intergenic Intergenic 3180 NM_001160325 128366 Hs.723122 NM_001160325 ENSG00000186440 OR6P1 - olfactory receptor family 6 subfamily P member 1 protein-coding 375-6 chr14 21887424 21887682 + 2 NA Intergenic Intergenic -216536 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 399.5 chr1 86456023 86456355 + 2 NA 3' UTR (NM_006536, exon 14 of 14) 3' UTR (NM_006536, exon 14 of 14) -12738 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 459.5-4 chr19 28628461 28628872 + 2 NA intron (NR_110759, intron 5 of 9) L1MA5A|LINE|L1 21978 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 413.333-2 chr10 100143121 100143520 + 2 NA Intergenic AluSz6|SINE|Alu 42709 NM_001100626 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 578.501-2 chr4 46387607 46388193 + 2 NA intron (NM_001114175, intron 1 of 8) intron (NM_001114175, intron 1 of 8) 1479 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 295-7 chr12 114507891 114508144 + 2 NA Intergenic Intergenic -99575 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 347.5-8 chr2 83588689 83588960 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 66010 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 775.5-3 chr17 61574819 61575739 + 2 NA Intergenic Intergenic 15940 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 312.667-6 chr12 71471588 71471755 + 2 NA intron (NR_110596, intron 1 of 19) MIR|SINE|MIR 31873 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 502-4 chr7 81516566 81517017 + 2 NA intron (NR_136264, intron 4 of 4) intron (NR_136264, intron 4 of 4) 45028 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 352.167-4 chr19 55418331 55418584 + 2 NA Intergenic Intergenic -10669 NM_014501 27338 Hs.396393 NM_014501 ENSG00000108106 UBE2S E2-EPF|E2EPF|EPF5 ubiquitin conjugating enzyme E2 S protein-coding 271-29 chr6 116446579 116446789 + 2 NA Intergenic Intergenic -14691 NM_001276460 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 450.666-2 chr10 5792157 5792524 + 2 NA intron (NM_001115156, intron 3 of 9) MIR|SINE|MIR 21094 NM_001494 2665 Hs.299055 NM_001494 ENSG00000057608 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 312.5-20 chr7 34429973 34430605 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -227929 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 286.5-13 chr5 28894096 28894383 + 2 NA Intergenic Intergenic -32631 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 347.333-19 chr8 102710667 102710891 + 2 NA Intergenic Intergenic 54531 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 549.167-3 chr3 34009954 34010567 + 2 NA Intergenic Intergenic 211630 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 721.833 chr1 192610347 192611209 + 2 NA Intergenic MIR3|SINE|MIR -25369 NM_002927 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 238.5-13 chr17 65781609 65781873 + 2 NA intron (NM_001353129, intron 21 of 26) L1PA16|LINE|L1 44710 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 387-14 chr4 30906643 30907386 + 2 NA intron (NM_032457, intron 1 of 2) AluSx1|SINE|Alu 186645 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 348.666-9 chr5 66158095 66158373 + 2 NA intron (NM_001323529, intron 2 of 11) intron (NM_001323529, intron 2 of 11) 13399 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 308.834 chr1 7263167 7263355 + 2 NA intron (NM_001349608, intron 4 of 21) intron (NM_001349608, intron 4 of 21) 126493 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 632.834-2 chr11 124069126 124069777 + 2 NA Intergenic Intergenic -30450 NM_001004463 390265 Hs.553761 NM_001004463 ENSG00000182634 OR10G7 OR11-283 olfactory receptor family 10 subfamily G member 7 protein-coding 236.333-12 chr19 51951217 51951776 + 2 NA intron (NR_103847, intron 1 of 2) LOR1a|LTR|ERV1 2362 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 488.5 chr11 9808740 9809153 + 2 NA exon (NM_030962, exon 31 of 40) exon (NM_030962, exon 31 of 40) -30196 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 333.501-2 chr4 103043215 103043502 + 2 NA exon (NM_178833, exon 9 of 12) exon (NM_178833, exon 9 of 12) -23653 NR_047515 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 186.167-2 chr1 52686360 52686483 + 2 NA 3' UTR (NM_023077, exon 3 of 3) 3' UTR (NM_023077, exon 3 of 3) 11926 NM_023077 65260 Hs.349905 NM_023077 ENSG00000162377 COA7 C1orf163|RESA1|SCAN3|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 403-7 chr9 6024053 6024286 + 2 NA Intergenic Intergenic -8545 NM_012416 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 247.5-4 chr11 109547654 109547899 + 2 NA Intergenic Intergenic 125586 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 576.333-2 chr8 122677020 122677847 + 2 NA intron (NR_126348, intron 2 of 3) L1MC1|LINE|L1 16673 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 234-29 chr5 18704639 18704803 + 2 NA Intergenic (TTATAA)n|Simple_repeat|Simple_repeat 897447 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 186-50 chr9 136633295 136633456 + 2 NA Intergenic L1M4|LINE|L1 -16194 NR_135288 401561 Hs.609301 NR_135288 ENSG00000279141 LINC01451 HCCAT4 long intergenic non-protein coding RNA 1451 ncRNA 329.5-11 chr2 36868465 36868720 + 2 NA intron (NM_003162, intron 11 of 17) intron (NM_003162, intron 11 of 17) 97944 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 431.334-4 chr8 116715809 116716333 + 2 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 39752 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 261.5-25 chr3 6563531 6563709 + 2 NA Intergenic Intergenic 241829 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 294.5-11 chr14 77545135 77545346 + 2 NA intron (NM_004863, intron 9 of 11) intron (NM_004863, intron 9 of 11) -46424 NM_199296 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 345.834-3 chr3 186417801 186418060 + 2 NA Intergenic Intergenic -22415 NR_151708 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 424.168 chr2 88187270 88187704 + 2 NA TTS (NM_018271) TTS (NM_018271) 14348 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 367.833-3 chr11 70195917 70196497 + 2 NA Intergenic Intergenic -6956 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 310-7 chr11 91425681 91425949 + 2 NA Intergenic Intergenic -556613 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 429.5-4 chr2 189559103 189559729 + 2 NA Intergenic Intergenic 21395 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 421.167-4 chr20 55893155 55893759 + 2 NA Intergenic Intergenic 112062 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 221-6 chr11 60697127 60697244 + 2 NA Intergenic LTR16C|LTR|ERVL -2427 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 899.334 chr1 202926658 202927513 + 2 NA intron (NM_001303051, intron 1 of 11) CpG 149 NM_021633 59349 Hs.706793 NM_021633 ENSG00000117153 KLHL12 C3IP1|DKIR kelch like family member 12 protein-coding 243.333-39 chr6 150849050 150849190 + 2 NA Intergenic L1M5|LINE|L1 -16559 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 379.833 chr1 168628923 168629220 + 2 NA Intergenic Intergenic 52466 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 563-4 chr5 141434981 141435507 + 2 NA intron (NM_003735, intron 1 of 3) intron (NM_003735, intron 1 of 3) 4737 NM_003735 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 253.333-7 chr13 94656239 94656538 + 2 NA Intergenic AluJr|SINE|Alu 52098 NR_120417 101927248 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 533.833-3 chr3 76585935 76586289 + 2 NA Intergenic Intergenic -453987 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 206-3 chr1 76088071 76088235 + 2 NA intron (NM_001349108, intron 1 of 3) MIR|SINE|MIR 13407 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 628.833 chr12 69879272 69879746 + 2 NA intron (NM_182530, intron 4 of 24) intron (NM_182530, intron 4 of 24) 54282 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 364.333-4 chr20 7161668 7161860 + 2 NA intron (NR_110609, intron 5 of 7) intron (NR_110609, intron 5 of 7) 92438 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 917.832 chr1 47192474 47193305 + 2 NA Intergenic Intergenic -2853 NM_005764 10158 Hs.431099 NM_005764 ENSG00000162366 PDZK1IP1 DD96|MAP17|SPAP PDZK1 interacting protein 1 protein-coding 214.167-8 chr16 60399442 60399554 + 2 NA Intergenic Intergenic -39705 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 471.666 chr2 211093711 211094139 + 2 NA Intergenic Intergenic 476354 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 247.333-20 chr4 165359702 165359918 + 2 NA Intergenic Intergenic -19198 NM_001873 1363 Hs.75360 NM_001873 ENSG00000109472 CPE CPH carboxypeptidase E protein-coding 192-43 chr7 135291970 135292074 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 60043 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 318.5 chr1 40027376 40027550 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -12602 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 627.167 chr11 86291953 86292605 + 2 NA Intergenic L2a|LINE|L2 -9961 NM_001322404 51501 Hs.283322 NM_016401 ENSG00000149196 HIKESHI C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10 heat shock protein nuclear import factor hikeshi protein-coding 349.999 chr3 187147202 187147433 + 2 NA Intergenic L1M5|LINE|L1 -7821 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 374-4 chr20 50781240 50781532 + 2 NA Intergenic L1MB8|LINE|L1 -13508 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 335-6 chr17 66484427 66484714 + 2 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -67716 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 631.5 chr8 129486593 129487165 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -2737 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 384.666-3 chr16 12149147 12149465 + 2 NA intron (NM_032167, intron 13 of 20) MLT1J|LTR|ERVL-MaLR 172572 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 287-8 chr14 42922970 42923183 + 2 NA Intergenic Intergenic 1316220 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 336.667-2 chr10 97701204 97701650 + 2 NA Intergenic Intergenic -12303 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 306.501-6 chr6 88426936 88427204 + 2 NA Intergenic Intergenic 112299 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 460.5-2 chr2 176963040 176963422 + 2 NA Intergenic Intergenic 249180 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 395-4 chr5 176657951 176658595 + 2 NA 3' UTR (NM_001366492, exon 7 of 7) 3' UTR (NM_001366492, exon 7 of 7) 10789 NM_001006616 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 197.333-13 chr19 5996328 5996455 + 2 NA intron (NM_000635, intron 16 of 17) L1MB5|LINE|L1 17988 NR_046376 100128568 Hs.624525 NR_046376 ENSG00000266983 LOC100128568 - uncharacterized LOC100128568 ncRNA 321-18 chr5 25091973 25092344 + 2 NA Intergenic Intergenic 98498 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 265.333-22 chr8 94271040 94271233 + 2 NA Intergenic Intergenic -8817 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 320.667-13 chr5 174063833 174064228 + 2 NA intron (NM_015980, intron 2 of 4) L1ME4a|LINE|L1 18324 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 356.334-4 chr16 31517640 31517933 + 2 NA Intergenic MER11B|LTR|ERVK -9395 NM_022744 64755 Hs.9003 NM_022744 ENSG00000140688 C16orf58 RUS chromosome 16 open reading frame 58 protein-coding 690.666 chr17 20121393 20122084 + 2 NA intron (NM_001033553, intron 3 of 14) intron (NM_001033553, intron 3 of 14) -34334 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 291.334-9 chr5 179923010 179923231 + 2 NA Intergenic L1ME1|LINE|L1 -15223 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 346.334-2 chr10 63638728 63638979 + 2 NA Intergenic L1ME4a|LINE|L1 -116963 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 172-42 chr5 127714194 127714285 + 2 NA intron (NM_001317938, intron 2 of 6) L1MA6|LINE|L1 10850 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 403-4 chr21 35979694 35979999 + 2 NA intron (NR_110418, intron 4 of 5) MER63C|DNA|hAT-Blackjack 24821 NR_110418 101928269 Hs.589909 NR_110418 LOC101928269 - uncharacterized LOC101928269 ncRNA 310.667-10 chr2 210536117 210536328 + 2 NA intron (NM_001369256, intron 1 of 38) intron (NM_001369256, intron 1 of 38) -12903 NR_161225 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 594.167 chr4 116179718 116180213 + 2 NA Intergenic Intergenic -119760 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 275-13 chr19 29653742 29653946 + 2 NA Intergenic L1MEf|LINE|L1 -11617 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 503.333 chr11 17760206 17760554 + 2 NA intron (NM_001112741, intron 1 of 3) intron (NM_001112741, intron 1 of 3) 24432 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 237-31 chr4 94579579 94579797 + 2 NA intron (NM_001011516, intron 5 of 9) intron (NM_001011516, intron 5 of 9) 127746 NM_001256429 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 336.167-4 chr3 48188449 48188694 + 2 NA promoter-TSS (NM_001789) promoter-TSS (NM_001789) -154 NM_201567 993 Hs.437705 NM_001789 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 250.667-13 chr16 54059972 54060197 + 2 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) 20691 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 890.834 chr11 57567745 57568705 + 2 NA promoter-TSS (NM_004223) promoter-TSS (NM_004223) 105 NM_198183 9246 Hs.425777 NM_004223 ENSG00000156587 UBE2L6 RIG-B|UBCH8 ubiquitin conjugating enzyme E2 L6 protein-coding 419.333-3 chr16 19899160 19899460 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -13676 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 630.667 chr12 15978923 15979702 + 2 NA intron (NM_001300779, intron 5 of 7) intron (NM_001300779, intron 5 of 7) 67980 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 306.333-2 chr16 6725898 6726189 + 2 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -47766 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 203-17 chr2 24949696 24949885 + 2 NA intron (NM_001198559, intron 5 of 5) intron (NM_001198559, intron 5 of 5) 22165 NM_016544 51277 Hs.434993 NM_016544 ENSG00000115137 DNAJC27 RBJ|RabJS DnaJ heat shock protein family (Hsp40) member C27 protein-coding 350-5 chr11 24039352 24039617 + 2 NA Intergenic Intergenic -457569 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 653.333-2 chr7 65307702 65308167 + 2 NA Intergenic PABL_B-int|LTR|ERV1 -65865 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 409.334-3 chr12 92213419 92213735 + 2 NA Intergenic L2a|LINE|L2 67492 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 303.667 chr1 27836126 27836389 + 2 NA intron (NM_138558, intron 2 of 6) intron (NM_138558, intron 2 of 6) 1856 NR_002997 677774 Hs.689694 NR_002997 ENSG00000252947 SCARNA1 ACA35 small Cajal body-specific RNA 1 ncRNA 540.833 chr10 12719655 12720394 + 2 NA intron (NM_001351032, intron 5 of 11) MER5A|DNA|hAT-Charlie 5329 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 546.5-4 chr9 15104758 15105237 + 2 NA Intergenic Intergenic 111670 NR_003920 389705 Hs.431257 NR_003920 LOC389705 - histone PARylation factor 1 pseudogene pseudo 341.5-15 chr3 156555370 156555812 + 2 NA promoter-TSS (NM_001308204) promoter-TSS (NM_001308204) -391 NM_001308197 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 392.834 chr1 60266207 60266502 + 2 NA Intergenic Intergenic -192584 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 517-4 chr8 67047524 67048042 + 2 NA intron (NM_006837, intron 6 of 7) intron (NM_006837, intron 6 of 7) 14350 NM_006837 10987 Hs.491912 NM_006837 ENSG00000121022 COPS5 CSN5|JAB1|MOV-34|SGN5 COP9 signalosome subunit 5 protein-coding 340 chr1 205933748 205934082 + 2 NA promoter-TSS (NR_110984) promoter-TSS (NR_110984) -998 NR_110984 103021296 Hs.613648 NR_110983 SLC26A9-AS1 - SLC26A9 and RAB7B antisense RNA 1 ncRNA 229 chr1 209144702 209144843 + 2 NA Intergenic L2c|LINE|L2 172318 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 422 chr1 18581369 18581650 + 2 NA Intergenic Intergenic -49337 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 235.167 chr1 62066167 62066370 + 2 NA intron (NM_001350145, intron 31 of 43) MIR|SINE|MIR -12518 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 375.667-9 chr2 51293139 51293529 + 2 NA intron (NR_135237, intron 2 of 10) L4_C_Mam|LINE|RTE-X 260733 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 322-8 chr3 9575148 9575418 + 2 NA Intergenic AluJr|SINE|Alu -21461 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 224.834-3 chr12 17606152 17606343 + 2 NA Intergenic Intergenic -17169 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 369.333-8 chr8 63861300 63861521 + 2 NA intron (NR_125826, intron 4 of 4) L1MD1|LINE|L1 91980 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 331-7 chr11 114167999 114168232 + 2 NA intron (NM_001354752, intron 2 of 4) L2c|LINE|L2 104904 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 308-13 chr3 2168766 2169051 + 2 NA intron (NM_175607, intron 2 of 24) L1MEd|LINE|L1 -24667 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 314.167 chr1 169488454 169488667 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -2590 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 414.667-6 chr21 22650118 22650517 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -428967 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 427-6 chr18 65091905 65092465 + 2 NA Intergenic Intergenic -658067 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 258-20 chr2 134137670 134138128 + 2 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) 10774 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 274-37 chr8 116880717 116880930 + 2 NA Intergenic FLAM_C|SINE|Alu -5957 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 281.333-3 chr10 121092325 121092523 + 2 NA Intergenic MIR|SINE|MIR 241062 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 273-9 chr15 60395388 60395655 + 2 NA intron (NM_001136015, intron 1 of 13) intron (NM_001136015, intron 1 of 13) 2465 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 181.667-17 chr16 27179466 27179698 + 2 NA Intergenic L2b|LINE|L2 -23944 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 355.334-5 chr2 166196170 166196400 + 2 NA 3' UTR (NM_002977, exon 27 of 27) 3' UTR (NM_002977, exon 27 of 27) -47124 NM_001353950 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 368.666 chr14 86461998 86462336 + 2 NA Intergenic Intergenic -443611 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 299-7 chr16 72720329 72720713 + 2 NA Intergenic MER3|DNA|hAT-Charlie -55551 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 591.666 chr2 179440307 179441183 + 2 NA Intergenic Intergenic 121843 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 483.333-5 chr6 37955343 37955665 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 135777 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 427.5-3 chr2 182593257 182593621 + 2 NA Intergenic Intergenic -70594 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 419-14 chr7 74329466 74329774 + 2 NA intron (NM_032421, intron 2 of 15) MER103C|DNA|hAT-Charlie 40145 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 277-11 chr17 78840767 78840912 + 2 NA promoter-TSS (NM_001321291) promoter-TSS (NM_001321291) -312 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 197-17 chr2 175089587 175089769 + 2 NA intron (NM_001256092, intron 11 of 12) intron (NM_001256092, intron 11 of 12) 78031 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 340.5-10 chr9 94726515 94726750 + 2 NA promoter-TSS (NM_032823) promoter-TSS (NM_032823) -37 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 374.667-7 chr18 70195624 70195982 + 2 NA intron (NM_001318520, intron 7 of 47) intron (NM_001318520, intron 7 of 47) 9884 NM_173630 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 362.667-5 chr19 17419769 17420045 + 2 NA promoter-TSS (NM_138401) promoter-TSS (NM_138401) -140 NM_138401 93343 Hs.515243 NM_138401 ENSG00000141971 MVB12A CFBP|FAM125A multivesicular body subunit 12A protein-coding 363.166-3 chr2 62902432 62902618 + 2 NA intron (NM_001142615, intron 10 of 22) intron (NM_001142615, intron 10 of 22) 145186 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 552-4 chr6 160732855 160733476 + 2 NA intron (NM_000301, intron 12 of 18) MER21C|LTR|ERVL 30972 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 671.501 chr1 167938313 167938949 + 2 NA intron (NM_001349780, intron 1 of 17) intron (NM_001349780, intron 1 of 17) -1559 NM_001143674 25874 Hs.517768 NM_015415 ENSG00000143158 MPC2 BRP44|SLC54A2 mitochondrial pyruvate carrier 2 protein-coding 305.667-11 chr4 96677836 96677996 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 367213 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 262-8 chr13 44620095 44620362 + 2 NA Intergenic Intergenic -20141 NR_149082 106144541 Hs.578031 NR_149082 LINC00407 - long intergenic non-protein coding RNA 407 ncRNA 295-20 chr4 124675169 124675541 + 2 NA intron (NM_001167882, intron 2 of 3) intron (NM_001167882, intron 2 of 3) 37377 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 346-8 chr5 84797108 84797440 + 2 NA Intergenic Intergenic -412394 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 372 chr11 78416172 78416476 + 2 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 1496 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 421-2 chr10 86475640 86475897 + 2 NA intron (NM_001318328, intron 4 of 18) intron (NM_001318328, intron 4 of 18) 46016 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 629.001-2 chr3 20039596 20040220 + 2 NA promoter-TSS (NM_003884) promoter-TSS (NM_003884) -538 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 626 chr1 115545782 115546356 + 2 NA Intergenic Intergenic -95901 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 245-15 chr2 169930839 169931244 + 2 NA intron (NM_172070, intron 18 of 38) intron (NM_172070, intron 18 of 38) 103533 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 163.333-50 chr5 144287919 144288029 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 82583 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 319.5-4 chr12 115314308 115314585 + 2 NA Intergenic Intergenic -630271 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 580.5-3 chr7 36487583 36488173 + 2 NA Intergenic Intergenic -97521 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 524.834-2 chr16 58629972 58630652 + 2 NA promoter-TSS (NM_001265612) promoter-TSS (NM_001265612) -486 NM_001265612 23019 Hs.460923 NM_016284 ENSG00000125107 CNOT1 AD-005|CDC39|NOT1|NOT1H CCR4-NOT transcription complex subunit 1 protein-coding 798.167-2 chr5 141878844 141879609 + 2 NA promoter-TSS (NM_032420) promoter-TSS (NM_032420) -816 NM_002587 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 659.667 chr11 20610068 20611061 + 2 NA intron (NM_004211, intron 5 of 15) intron (NM_004211, intron 5 of 15) 11164 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 393.167-8 chr6 129773920 129774264 + 2 NA Intergenic Intergenic -63915 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 601.667 chr12 10172207 10172672 + 2 NA promoter-TSS (NM_002543) promoter-TSS (NM_002543) -248 NM_001172633 4973 Hs.412484 NM_002543 ENSG00000173391 OLR1 CLEC8A|LOX1|LOXIN|SCARE1|SLOX1 oxidized low density lipoprotein receptor 1 protein-coding 577-2 chr6 154009203 154009875 + 2 NA promoter-TSS (NM_001145280) promoter-TSS (NM_001145280) -957 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 769.168-2 chr3 33787340 33788001 + 2 NA Intergenic Intergenic -10901 NM_001162429 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 1141 chr19 45769391 45770682 + 2 NA promoter-TSS (NM_175875) promoter-TSS (NM_175875) -784 NM_175875 147912 Hs.43314 NM_175875 ENSG00000177045 SIX5 BOR2|DMAHP SIX homeobox 5 protein-coding 510.833 chr15 38699615 38700124 + 2 NA non-coding (NR_160786, exon 2 of 2) non-coding (NR_160786, exon 2 of 2) 3271 NR_160786 467.333-3 chr7 55279835 55280321 + 2 NA Intergenic Intergenic -24443 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 423.833-5 chr15 88243851 88244318 + 2 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) -8646 NR_038229 283738 Hs.578429 NR_038229 ENSG00000260305 NTRK3-AS1 - NTRK3 antisense RNA 1 ncRNA 272.666-4 chr14 30377282 30377553 + 2 NA Intergenic Intergenic -181706 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 310.5-15 chr6 127306232 127306537 + 2 NA intron (NM_001002030, intron 5 of 5) MSTA|LTR|ERVL-MaLR 36023 NM_001139510 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 412.333-4 chr2 75677892 75678319 + 2 NA intron (NM_001201334, intron 12 of 16) MIRc|SINE|MIR 31322 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 555.999 chr19 40662713 40663203 + 2 NA Intergenic CpG 27206 NM_001289980 9253 Hs.326953 NM_004756 ENSG00000105245 NUMBL CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23 NUMB like endocytic adaptor protein protein-coding 351.667-8 chr14 69456494 69456836 + 2 NA intron (NM_001252150, intron 6 of 6) intron (NM_001252150, intron 6 of 6) -28063 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 355.333-9 chr9 91622911 91623111 + 2 NA Intergenic L1MB8|LINE|L1 -13240 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 278.167-17 chr22 47224422 47224578 + 2 NA Intergenic L1ME4b|LINE|L1 -121071 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 191-11 chr12 10797201 10797307 + 2 NA Intergenic Intergenic 5373 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 354.667-6 chr17 68069433 68069663 + 2 NA Intergenic AluJb|SINE|Alu -32007 NR_027418 100499466 Hs.591212 NR_027418 LINC00674 - long intergenic non-protein coding RNA 674 ncRNA 273.667-6 chr13 27350361 27350578 + 2 NA Intergenic Intergenic -74150 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 523.667 chr1 85255798 85256173 + 2 NA intron (NR_024113, intron 3 of 3) intron (NR_024113, intron 3 of 3) 3677 NM_198077 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 377.667-9 chr6 158704101 158704348 + 2 NA intron (NM_001242394, intron 6 of 17) MER58B|DNA|hAT-Charlie 40821 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 381.333-5 chr2 207534380 207534830 + 2 NA intron (NR_163946, intron 1 of 8) intron (NR_163946, intron 1 of 8) 4643 NR_135473 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 375-15 chr7 39380563 39380778 + 2 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) 25676 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 227-27 chr6 91173966 91174351 + 2 NA Intergenic Intergenic -347502 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 470-3 chr17 29769474 29769838 + 2 NA intron (NM_033389, intron 2 of 14) MIRc|SINE|MIR -8224 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 902.5-2 chr20 9359395 9360347 + 2 NA intron (NM_000933, intron 4 of 35) intron (NM_000933, intron 4 of 35) 52071 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 487-5 chr8 124005788 124006076 + 2 NA intron (NR_040044, intron 4 of 5) intron (NR_040044, intron 4 of 5) 34850 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 865.001 chr1 176374580 176375599 + 2 NA Intergenic Intergenic -88086 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 310.667-12 chr21 21373968 21374165 + 2 NA intron (NM_001352592, intron 10 of 18) intron (NM_001352592, intron 10 of 18) 226904 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 194-6 chr10 17589438 17589631 + 2 NA 3' UTR (NM_014241, exon 7 of 7) 3' UTR (NM_014241, exon 7 of 7) 27840 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 335-11 chr3 165256534 165256710 + 2 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 49662 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 178-47 chrX 154124229 154124334 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -19962 NM_020061 5956 Hs.247787 NM_020061 ENSG00000102076 OPN1LW CBBM|CBP|COD5|RCP|ROP opsin 1, long wave sensitive protein-coding 356.5-7 chr20 4604725 4605052 + 2 NA Intergenic L1M5|LINE|L1 -81568 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 482.001-2 chr16 72640856 72641328 + 2 NA intron (NR_159372, intron 1 of 7) L1MC4|LINE|L1 23878 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 236-13 chr4 6333869 6334083 + 2 NA intron (NM_001206994, intron 7 of 9) MIRb|SINE|MIR 47892 NM_181876 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 392.834-2 chr10 127854156 127854624 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 38551 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 363.333-2 chr12 40831975 40832252 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 4175 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 396-10 chr8 124972983 124973321 + 2 NA promoter-TSS (NM_152412) promoter-TSS (NM_152412) -143 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 266.833-15 chr3 126132828 126133233 + 2 NA intron (NM_012190, intron 12 of 22) intron (NM_012190, intron 12 of 22) 29390 NR_046602 100874204 Hs.742339 NR_046602 ENSG00000250218 ALDH1L1-AS1 - ALDH1L1 antisense RNA 1 ncRNA 325.333-15 chr8 100873564 100873789 + 2 NA Intergenic AluJo|SINE|Alu 76895 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 358.667-3 chr12 37977832 37978064 + 2 NA Intergenic ALR/Alpha|Satellite|centr -338826 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 317.833-7 chr19 41354175 41354421 + 2 NA promoter-TSS (NM_000660) promoter-TSS (NM_000660) -376 NM_000660 7040 Hs.645227 NM_000660 ENSG00000105329 TGFB1 CED|DPD1|IBDIMDE|LAP|TGFB|TGFbeta transforming growth factor beta 1 protein-coding 413-6 chr2 68487490 68487913 + 2 NA intron (NM_173545, intron 1 of 9) intron (NM_173545, intron 1 of 9) 20116 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 409.833-4 chr17 51167197 51167612 + 2 NA intron (NM_001018138, intron 1 of 3) intron (NM_001018138, intron 1 of 3) 682 NM_001018138 4831 Hs.463456 NM_002512 ENSG00000243678 NME2 NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF NME/NM23 nucleoside diphosphate kinase 2 protein-coding 506.667-3 chr11 20367285 20367880 + 2 NA TTS (NM_001098523) TTS (NM_001098523) 3441 NM_001098523 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 294-2 chr1 102935869 102936083 + 2 NA intron (NM_001854, intron 44 of 66) Charlie1a|DNA|hAT-Charlie 172520 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 443.667-6 chr18 6230061 6230398 + 2 NA intron (NM_001365769, intron 10 of 16) L1PA15|LINE|L1 -26515 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 491-5 chr14 74260493 74260822 + 2 NA exon (NM_182894, exon 5 of 5) exon (NM_182894, exon 5 of 5) 21208 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 384-7 chr6 53390201 53390550 + 2 NA Intergenic LTR16D2|LTR|ERVL -41196 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 215-30 chr3 133531748 133531933 + 2 NA Intergenic Intergenic -40694 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 236.667-9 chr14 53010952 53011213 + 2 NA Intergenic Intergenic -59985 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 568 chr11 31510809 31511440 + 2 NA intron (NM_001288725, intron 1 of 10) intron (NM_001288725, intron 1 of 10) 1357 NM_001288726 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 305.667-14 chr5 141199211 141199760 + 2 NA promoter-TSS (NM_018931) promoter-TSS (NM_018931) -142 NM_018931 56125 Hs.283084 NM_018931 ENSG00000197479 PCDHB11 ME2|PCDH-BETA11 protocadherin beta 11 protein-coding 225-27 chr4 103646197 103646382 + 2 NA intron (NM_001059, intron 3 of 4) L3|LINE|CR1 73696 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 453.5 chr10 103481700 103482257 + 2 NA intron (NR_120675, intron 3 of 3) intron (NR_120675, intron 3 of 3) -2738 NM_001129742 119395 Hs.364624 NM_182494 ENSG00000183128 CALHM3 FAM26A|bA225H22.7 calcium homeostasis modulator 3 protein-coding 211.333-51 chr8 129787928 129788151 + 2 NA Intergenic L1MA3|LINE|L1 -1415 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 323.5-9 chr17 58993978 58994254 + 2 NA intron (NM_001005207, intron 24 of 24) L1MC4a|LINE|L1 112764 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 836.001-3 chr20 38221211 38221936 + 2 NA intron (NM_001029864, intron 10 of 13) MIR|SINE|MIR -38602 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 688.499 chr14 70906488 70907295 + 2 NA promoter-TSS (NM_001308160) promoter-TSS (NM_001308160) -568 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 646.334-2 chr3 40317023 40317501 + 2 NA Intergenic Intergenic 7555 NM_005875 10289 Hs.315230 NM_005875 ENSG00000114784 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 297.667-12 chr19 31887822 31888075 + 2 NA Intergenic Intergenic -137914 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 242.667 chr1 10507389 10507582 + 2 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 32535 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 282-25 chr6 129121268 129121537 + 2 NA intron (NM_000426, intron 4 of 64) intron (NM_000426, intron 4 of 64) 238261 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 414-4 chr3 173925727 173926116 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -5125 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 430-2 chr19 5578169 5578589 + 2 NA Intergenic Intergenic -10345 NR_027064 257000 Hs.515575 NM_153375 ENSG00000223573 TINCR LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16 TINCR ubiquitin domain containing ncRNA 432-9 chr8 121087361 121087606 + 2 NA Intergenic Intergenic -275437 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 470.334 chr2 121157875 121158287 + 2 NA Intergenic L1MDa|LINE|L1 127121 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 440.667-7 chr8 78466085 78466563 + 2 NA Intergenic L1PA14|LINE|L1 -50016 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 169-26 chr19 30671737 30671853 + 2 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 299411 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 373.333-9 chr4 37803312 37803855 + 2 NA Intergenic Intergenic -23103 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 231-30 chr7 104506790 104506959 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 178218 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 418.333-3 chr4 64587253 64587624 + 2 NA Intergenic Intergenic -177978 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 401.834-2 chr7 79550956 79551335 + 2 NA Intergenic Intergenic 97185 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 467.334 chr1 199552235 199552751 + 2 NA Intergenic Intergenic 403895 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 360.667-10 chr4 110005255 110005686 + 2 NA intron (NM_001357021, intron 19 of 19) MER53|DNA|hAT 92587 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 316-11 chr3 84840610 84840853 + 2 NA intron (NR_033860, intron 8 of 20) MIR|SINE|MIR 28844 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 563.333-2 chr1 150187114 150188080 + 2 NA Intergenic MER20|DNA|hAT-Charlie 26869 NR_135098 105371433 Hs.599366 NR_135098 LOC105371433 - uncharacterized LOC105371433 ncRNA 205.333-7 chr10 117674029 117674238 + 2 NA Intergenic Intergenic -129065 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 469.834-2 chr16 24036812 24037260 + 2 NA intron (NM_002738, intron 5 of 16) AluSx1|SINE|Alu -166080 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 351-11 chr5 66807982 66808221 + 2 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -20672 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 397.001-3 chr5 93582343 93582722 + 2 NA promoter-TSS (NM_005654) promoter-TSS (NM_005654) -690 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding 598.833 chr2 151808133 151808791 + 2 NA intron (NM_001037174, intron 4 of 5) intron (NM_001037174, intron 4 of 5) 19959 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 251.5-24 chr7 86397139 86397351 + 2 NA Intergenic Intergenic -246664 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 262-26 chr6 137697576 137697784 + 2 NA Intergenic Intergenic 32034 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 251.333-30 chr8 91070061 91070231 + 2 NA promoter-TSS (NM_016023) promoter-TSS (NM_016023) 43 NR_110438 100506365 Hs.153412 NR_110438 ENSG00000253738 OTUD6B-AS1 GS1-251I9.4 OTUD6B antisense RNA 1 (head to head) ncRNA 319.167-14 chr4 15805198 15805758 + 2 NA intron (NR_132660, intron 1 of 6) L2a|LINE|L2 27150 NM_001775 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 286-17 chr5 10630592 10630847 + 2 NA intron (NM_001164440, intron 2 of 3) MER39B|LTR|ERV1 66649 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 644.333 chr12 57124144 57124769 + 2 NA Intergenic Intergenic -4027 NM_002332 4035 Hs.162757 NM_002332 ENSG00000123384 LRP1 A2MR|APOER|APR|CD91|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5 LDL receptor related protein 1 protein-coding 266-26 chrX 120469123 120469453 + 2 NA promoter-TSS (NM_002294) promoter-TSS (NM_002294) 61 NM_002294 3920 Hs.496684 NM_002294 ENSG00000005893 LAMP2 CD107b|LAMP-2|LAMPB|LGP-96|LGP110 lysosomal associated membrane protein 2 protein-coding 204.5-22 chr20 47096093 47096244 + 2 NA intron (NM_172110, intron 8 of 13) intron (NM_172110, intron 8 of 13) -70799 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 240.666-8 chr3 147827610 147827805 + 2 NA Intergenic L1M8|LINE|L1 -250452 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 190.167-12 chr2 209525878 209526115 + 2 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -53340 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 244.833-8 chr5 120092919 120093127 + 2 NA Intergenic Intergenic -371255 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 320.833 chr1 40984357 40984712 + 2 NA intron (NR_125440, intron 2 of 17) intron (NR_125440, intron 2 of 17) -3985 NM_001301237 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 352.666 chr1 236224483 236224700 + 2 NA intron (NM_019891, intron 13 of 15) intron (NM_019891, intron 13 of 15) 57367 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 268-37 chr8 115884438 115884609 + 2 NA Intergenic Intergenic -215548 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 662.334 chr6 92777077 92777722 + 2 NA Intergenic Intergenic 642160 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 211.667-34 chr5 73873377 73873590 + 2 NA intron (NM_001177693, intron 22 of 35) L2a|LINE|L2 59937 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 266-22 chr6 63599848 63600313 + 2 NA Intergenic Intergenic 28068 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 198-9 chr13 27830940 27831118 + 2 NA intron (NR_047484, intron 3 of 4) L1ME4a|LINE|L1 38546 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 468.334 chr9 122158156 122158513 + 2 NA intron (NM_014222, intron 1 of 3) L2c|LINE|L2 1445 NM_014222 4702 Hs.495039 NM_014222 ENSG00000119421 NDUFA8 CI-19KD|CI-PGIV|PGIV NADH:ubiquinone oxidoreductase subunit A8 protein-coding 442.333 chr1 84212132 84212534 + 2 NA intron (NM_182948, intron 8 of 9) intron (NM_182948, intron 8 of 9) 30701 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 381.667 chr1 112057250 112057550 + 2 NA Intergenic Intergenic 66864 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 243.167-13 chr5 123310535 123310738 + 2 NA Intergenic L1MD2|LINE|L1 112956 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 446.666-2 chr2 118856315 118856687 + 2 NA Intergenic CpG -8318 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 474 chr1 70999555 70999807 + 2 NA intron (NM_198719, intron 2 of 3) intron (NM_198719, intron 2 of 3) -46825 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 504 chr10 106276681 106277016 + 2 NA Intergenic LTR78B|LTR|ERV1 136683 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 297.5-2 chr1 45500099 45500334 + 2 NA promoter-TSS (NM_015506) promoter-TSS (NM_015506) -84 NM_015506 25974 Hs.13024 NM_015506 ENSG00000132763 MMACHC cblC metabolism of cobalamin associated C protein-coding 165.334-7 chr7 91639036 91639182 + 2 NA Intergenic Intergenic 241593 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 326-11 chr3 188974793 188974991 + 2 NA Intergenic Intergenic -27253 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 238.833-14 chr4 139619573 139619872 + 2 NA Intergenic AluSp|SINE|Alu -46046 NM_001204367 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 333.333-4 chr12 95606847 95607072 + 2 NA Intergenic Intergenic -42296 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 351.167-5 chr7 45166558 45166839 + 2 NA intron (NM_005856, intron 1 of 2) L1MB7|LINE|L1 8907 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 473.167 chr1 99188577 99188854 + 2 NA Intergenic L1ME3|LINE|L1 -75577 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 310.334 chr10 54539259 54539449 + 2 NA intron (NM_001142771, intron 2 of 34) L1P4|LINE|L1 53124 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 250.667-40 chr7 89299660 89299830 + 2 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -504008 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 436.333-4 chr3 80688526 80689433 + 2 NA Intergenic Intergenic -75918 NR_147143 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 275.167-17 chr3 127544192 127544677 + 2 NA Intergenic Intergenic -6654 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 166.333-16 chr12 78765183 78765357 + 2 NA Intergenic L1ME4c|LINE|L1 -98712 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 636.001-2 chr22 36546690 36547230 + 2 NA Intergenic Intergenic -17794 NR_156418 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 248.5-33 chr5 158415032 158415338 + 2 NA Intergenic Intergenic -5412 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 761.167-2 chr6 132298106 132298912 + 2 NA intron (NM_015529, intron 10 of 11) intron (NM_015529, intron 10 of 11) 102966 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 233.5-16 chr2 75265984 75266152 + 2 NA Intergenic L1MA3|LINE|L1 -66548 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 288-2 chr1 195421880 195422095 + 2 NA Intergenic Intergenic 666728 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 234.5-13 chr14 58244443 58244865 + 2 NA promoter-TSS (NM_152132) promoter-TSS (NM_152132) -151 NR_038123 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 386.5-11 chr9 6611785 6612059 + 2 NA intron (NM_000170, intron 3 of 24) intron (NM_000170, intron 3 of 24) 33770 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 443-6 chr2 79534321 79534554 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 11254 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 475.333-8 chr6 148991724 148992056 + 2 NA intron (NM_005715, intron 5 of 7) Charlie1a|DNA|hAT-Charlie -27206 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 261.167-18 chr5 42058849 42059039 + 2 NA Intergenic Intergenic 116401 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 358-15 chr7 130879443 130879719 + 2 NA intron (NR_110473, intron 3 of 3) intron (NR_110473, intron 3 of 3) -2042 NR_029517 407024 NR_029517 ENSG00000283797 MIR29B1 MIRN29B1|miR-29b|miRNA29B1|mir-29b-1 microRNA 29b-1 ncRNA 667.5 chr4 173419959 173421112 + 2 NA intron (NM_001329597, intron 2 of 3) intron (NM_001329597, intron 2 of 3) -21419 NM_007281 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 413.333-14 chr8 108295957 108296197 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -47360 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 175-57 chr9 36005080 36005180 + 2 NA Intergenic Intergenic -31783 NM_001316348 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 294-4 chr12 69461749 69461927 + 2 NA Intergenic Intergenic -8550 NM_001278357 10818 Hs.593446 NM_006654 ENSG00000166225 FRS2 FRS1A|FRS2A|FRS2alpha|SNT|SNT-1|SNT1 fibroblast growth factor receptor substrate 2 protein-coding 493.333-4 chr12 75954434 75954877 + 2 NA Intergenic L2a|LINE|L2 77121 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 541.499 chr9 68507444 68508009 + 2 NA intron (NM_021965, intron 10 of 10) intron (NM_021965, intron 10 of 10) 33141 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 898.5-2 chr16 17579265 17579932 + 2 NA Intergenic Intergenic -108638 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 433-10 chr5 13956531 13956961 + 2 NA Intergenic Intergenic -12266 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 646.667-4 chr5 43120821 43121570 + 2 NA promoter-TSS (NM_001330717) promoter-TSS (NM_001330717) -266 NM_003432 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 376.167-8 chr6 118956994 118957268 + 2 NA Intergenic Intergenic -21969 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 344.333-2 chr1 78345561 78345832 + 2 NA intron (NR_027310, intron 4 of 5) intron (NR_027310, intron 4 of 5) 116097 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 262.667-21 chr2 203018728 203018978 + 2 NA intron (NM_001114132, intron 2 of 54) L1MC5|LINE|L1 3974 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 476 chr15 89662926 89663370 + 2 NA Intergenic Intergenic -7681 NM_198525 374654 Hs.513134 NM_198525 ENSG00000166813 KIF7 ACLS|AGBK|HLS2|JBTS12|UNQ340 kinesin family member 7 protein-coding 317.5-9 chr2 49683009 49683368 + 2 NA Intergenic L1MA9|LINE|L1 291015 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 737 chr1 26500122 26500673 + 2 NA Intergenic CpG 27957 NM_005517 3151 Hs.181163 NM_005517 ENSG00000198830 HMGN2 HMG17 high mobility group nucleosomal binding domain 2 protein-coding 239-10 chr15 77182007 77182197 + 2 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) 43302 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 288-19 chr20 42824459 42824659 + 2 NA intron (NM_133170, intron 2 of 31) L1ME4a|LINE|L1 139076 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 334.5-3 chr1 200018192 200018373 + 2 NA Intergenic Intergenic -9428 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 523.333-2 chr14 88684977 88685408 + 2 NA intron (NM_183387, intron 19 of 42) intron (NM_183387, intron 19 of 42) 90772 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 355-3 chr19 16435380 16435651 + 2 NA intron (NM_021235, intron 6 of 22) L1MB2|LINE|L1 36455 NM_001258374 58513 Hs.654639 NM_021235 ENSG00000127527 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15 like 1 protein-coding 376.667-4 chr17 60392306 60392666 + 2 NA promoter-TSS (NM_032582) promoter-TSS (NM_032582) -353 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 430.834-3 chr2 100781063 100781329 + 2 NA Intergenic Intergenic -38943 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 331 chr1 20430397 20430652 + 2 NA Intergenic Intergenic -1730 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 270-19 chr17 32688313 32688678 + 2 NA intron (NM_015194, intron 16 of 21) intron (NM_015194, intron 16 of 21) 188629 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 289.334-8 chr6 47485772 47485940 + 2 NA intron (NM_012120, intron 1 of 17) Tigger3b|DNA|TcMar-Tigger 8067 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 323.333-10 chr16 7976474 7976690 + 2 NA Intergenic Intergenic 613256 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 501.333-3 chr6 133646248 133646704 + 2 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -174671 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 206.5-11 chr12 15116916 15117121 + 2 NA intron (NM_001190726, intron 2 of 3) intron (NM_001190726, intron 2 of 3) -34905 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 319.833-12 chr5 155943769 155944267 + 2 NA Intergenic L3|LINE|CR1 -382739 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 273.833-9 chr7 79741858 79742102 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 288020 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 696.001 chr16 57899704 57900245 + 2 NA intron (NM_001297, intron 29 of 32) intron (NM_001297, intron 29 of 32) 71154 NM_001135639 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 467.333-4 chr9 129036342 129036873 + 2 NA promoter-TSS (NR_138425) promoter-TSS (NR_138425) -19 NM_001329990 84895 Hs.632693 NM_032809 ENSG00000148343 MIGA2 C9orf54|FAM73B mitoguardin 2 protein-coding 399 chr1 110312116 110312402 + 2 NA intron (NR_036595, intron 2 of 3) intron (NR_036595, intron 2 of 3) 26912 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 223.667-43 chr6 43053883 43054072 + 2 NA promoter-TSS (NM_001168370) promoter-TSS (NM_001168370) -32 NM_001168370 9820 Hs.520136 NM_014780 ENSG00000044090 CUL7 3M1|CUL-7|KIAA0076|dJ20C7.5 cullin 7 protein-coding 466-6 chr6 133410083 133410435 + 2 NA intron (NM_172103, intron 3 of 18) intron (NM_172103, intron 3 of 18) 168760 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 555.667-2 chr4 32886850 32887587 + 2 NA Intergenic (TTATTAT)n|Simple_repeat|Simple_repeat 536180 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 319-11 chr4 80449016 80449389 + 2 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 113482 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 422.5-4 chr13 114262053 114262445 + 2 NA intron (NM_001330104, intron 14 of 16) intron (NM_001330104, intron 14 of 16) -11579 NR_039724 100616227 NR_039724 ENSG00000265450 MIR4502 - microRNA 4502 ncRNA 435.5 chr11 72112357 72112818 + 2 NA promoter-TSS (NM_001278494) promoter-TSS (NM_001278494) 108 NM_001330321 25906 Hs.38044 NM_014042 ENSG00000110200 ANAPC15 APC15|C11orf51|HSPC020 anaphase promoting complex subunit 15 protein-coding 371-3 chr12 58583584 58583810 + 2 NA intron (NR_120452, intron 3 of 7) MLT1E3-int|LTR|ERVL-MaLR -8005 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 427.167-10 chr9 5590004 5590502 + 2 NA Intergenic Intergenic -38854 NM_020829 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 481.667-3 chr8 126718837 126719321 + 2 NA Intergenic Intergenic -160601 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 398.334-3 chr17 70061168 70061500 + 2 NA intron (NR_104130, intron 1 of 1) MIR3|SINE|MIR 10063 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 559.667-2 chr4 173438650 173439119 + 2 NA intron (NM_001329597, intron 2 of 3) MLT1J2|LTR|ERVL-MaLR -39768 NM_007281 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 374-6 chr5 16033391 16033587 + 2 NA Intergenic MIR|SINE|MIR 98307 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 288.5-19 chr3 50292472 50292850 + 2 NA promoter-TSS (NM_006764) promoter-TSS (NM_006764) -66 NM_006764 7866 Hs.315177 NM_006764 ENSG00000214706 IFRD2 IFNRP|SKMc15|SM15 interferon related developmental regulator 2 protein-coding 342.166-2 chr18 31685667 31686117 + 2 NA Intergenic Intergenic -1147 NM_001330570 9331 Hs.591063 NM_004775 ENSG00000118276 B4GALT6 B4Gal-T6|beta4Gal-T6 beta-1,4-galactosyltransferase 6 protein-coding 454.5-5 chr22 48492283 48492894 + 2 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) 3035 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 253.5-19 chr22 25120994 25121201 + 2 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -8405 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 331.334-3 chr2 219807596 219807863 + 2 NA Intergenic L1MA8|LINE|L1 97160 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 373-8 chr5 9332966 9333411 + 2 NA intron (NM_003966, intron 4 of 22) intron (NM_003966, intron 4 of 22) -178145 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 643.168 chr20 51749865 51750438 + 2 NA intron (NM_006045, intron 1 of 27) AluSx1|SINE|Alu 18239 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 219.333-18 chr17 27708415 27708629 + 2 NA Intergenic Intergenic 77334 NM_002308 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 327-9 chr15 74464602 74464782 + 2 NA intron (NR_038448, intron 1 of 4) HAL1M8|LINE|L1 3427 NR_038448 440288 Hs.611046 NR_038448 ENSG00000247240 UBL7-AS1 - UBL7 antisense RNA 1 (head to head) ncRNA 289.334 chr1 119587336 119587727 + 2 NA Intergenic Intergenic 11760 NR_036540 644242 Hs.515383 NR_036540 ENSG00000260941 LINC00622 - long intergenic non-protein coding RNA 622 ncRNA 368.833-5 chr5 36876487 36876815 + 2 NA promoter-TSS (NM_133433) promoter-TSS (NM_133433) 43 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 285.5-20 chr3 111262508 111262687 + 2 NA Intergenic L1MB2|LINE|L1 190781 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 328.666 chr1 80038414 80038745 + 2 NA Intergenic Intergenic -497176 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 417.167-6 chr4 112988992 112989272 + 2 NA intron (NM_001354275, intron 2 of 43) MIR|SINE|MIR -60282 NM_001354241 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 607.167 chr5 130719935 130720825 + 2 NA Intergenic MIR|SINE|MIR 444876 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 273.834-5 chr20 54061255 54061562 + 2 NA intron (NM_001366297, intron 1 of 8) intron (NM_001366297, intron 1 of 8) -2388 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 304-12 chr16 26188988 26189281 + 2 NA Intergenic LTR51|LTR|ERV1 163897 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 722.833 chr1 87131480 87132268 + 2 NA promoter-TSS (NR_026985) promoter-TSS (NR_026985) -52 NR_026985 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 253-16 chr21 30428848 30429089 + 2 NA Intergenic Intergenic -1286 NM_181600 284827 Hs.553677 NM_181600 ENSG00000186971 KRTAP13-4 KAP13.4 keratin associated protein 13-4 protein-coding 556.167-3 chr12 52507125 52507549 + 2 NA Intergenic L1MC1|LINE|L1 13057 NM_000424 3852 Hs.433845 NM_000424 ENSG00000186081 KRT5 CK5|DDD|DDD1|EBS2|K5|KRT5A keratin 5 protein-coding 483.499 chr11 46655491 46655929 + 2 NA intron (NM_001346358, intron 6 of 16) intron (NM_001346358, intron 6 of 16) 38434 NM_001346318 9776 Hs.127403 NM_014741 ENSG00000175224 ATG13 KIAA0652|PARATARG8 autophagy related 13 protein-coding 286.167-20 chr7 116588287 116588668 + 2 NA intron (NR_120506, intron 2 of 4) intron (NR_120506, intron 2 of 4) 26343 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 456.334-2 chr8 116693776 116694070 + 2 NA intron (NM_003756, intron 2 of 7) AluJr|SINE|Alu 41823 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 284.167-3 chr1 110992325 110992582 + 2 NA Intergenic L1PB1|LINE|L1 -28509 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 619.167 chr13 76473474 76474025 + 2 NA Intergenic Intergenic 412656 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 282.667-20 chr22 49853536 49853748 + 2 NA promoter-TSS (NM_014838) promoter-TSS (NM_014838) -202 NM_014838 9889 Hs.475208 NM_014838 ENSG00000100426 ZBED4 - zinc finger BED-type containing 4 protein-coding 622.5 chr10 24557297 24557920 + 2 NA Intergenic AluSg|SINE|Alu 65235 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 394.833-3 chr4 73341324 73341603 + 2 NA Intergenic Intergenic -62824 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 286.501-2 chr18 22813713 22813978 + 2 NA Intergenic Intergenic -27008 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 466.333-5 chr4 26410922 26411377 + 2 NA intron (NM_203284, intron 4 of 11) FLAM_C|SINE|Alu 79335 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 399-2 chr1 113616561 113616863 + 2 NA intron (NM_001142782, intron 7 of 20) intron (NM_001142782, intron 7 of 20) 142443 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 295-26 chr7 3862596 3862861 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -266957 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 323.999-2 chr14 64293565 64293788 + 2 NA intron (NR_073496, intron 1 of 7) intron (NR_073496, intron 1 of 7) 734 NM_001040275 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 1268.83 chr11 77999915 78001433 + 2 NA Intergenic Intergenic -6006 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 253.333-19 chr3 115148733 115148920 + 2 NA Intergenic Intergenic -1538 NM_001348801 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 443.167-3 chr22 25299225 25299647 + 2 NA Intergenic Intergenic -18821 NR_029395 91353 Hs.651077 NM_001013618 IGLL3P 16.1|IGLL3 immunoglobulin lambda like polypeptide 3, pseudogene pseudo 248.167-2 chr1 59429628 59429799 + 2 NA intron (NM_001350794, intron 5 of 14) (AC)n|Simple_repeat|Simple_repeat -85917 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 275.333-12 chr22 35139794 35139972 + 2 NA intron (NR_126356, intron 4 of 5) MIRb|SINE|MIR 73725 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 486.167-3 chr5 170508590 170509136 + 2 NA intron (NM_001278339, intron 1 of 7) L2c|LINE|L2 4843 NM_001278339 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 169-21 chr17 28646965 28647059 + 2 NA Intergenic Intergenic -1853 NM_001363827 9703 Hs.151761 NM_014680 ENSG00000007202 KIAA0100 BCOX|BCOX1|CT101|FMP27 KIAA0100 protein-coding 523.833-2 chr7 15199275 15199681 + 2 NA TTS (NM_001004320) TTS (NM_001004320) -224620 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 182.5-35 chr6 43014000 43014158 + 2 NA promoter-TSS (NR_040101) promoter-TSS (NR_040101) -96 NM_001318942 4201 Hs.278362 NM_014623 ENSG00000124733 MEA1 HYS|MEA male-enhanced antigen 1 protein-coding 368-2 chr10 63770000 63770243 + 2 NA Intergenic LTR37B|LTR|ERV1 -248231 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 217.833-2 chr1 110116406 110116692 + 2 NA Intergenic L2b|LINE|L2 4106 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 505.667 chr16 67816280 67816748 + 2 NA intron (NM_001288994, intron 2 of 10) intron (NM_001288994, intron 2 of 10) 9625 NM_001288993 55815 Hs.632212 NM_018430 ENSG00000102904 TSNAXIP1 TXI1 translin associated factor X interacting protein 1 protein-coding 187-51 chrX 41137704 41137810 + 2 NA intron (NM_001039591, intron 6 of 44) intron (NM_001039591, intron 6 of 44) 52312 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 481.001 chr9 27535542 27536004 + 2 NA Intergenic Intergenic -5959 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 375-11 chr3 86973587 86973845 + 2 NA intron (NM_001320494, intron 2 of 3) intron (NM_001320494, intron 2 of 3) 17433 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 311.333-5 chr12 3939629 3939979 + 2 NA Intergenic Intergenic -66356 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 411-6 chr8 84646596 84646828 + 2 NA intron (NM_001354308, intron 3 of 9) L1MC4|LINE|L1 -59215 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 423.167-7 chr19 28711029 28711628 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 16366 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 364.167 chr11 6283366 6283629 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 23659 NM_001318029 887 Hs.203 NM_176875 ENSG00000110148 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 427.333 chr14 46348554 46348869 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -122648 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 463.333-3 chr16 2501149 2501629 + 2 NA 3' UTR (NM_001199107, exon 8 of 8) 3' UTR (NM_001199107, exon 8 of 8) -12337 NM_001198569 527 Hs.389107 NM_001694 ENSG00000185883 ATP6V0C ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 ATPase H+ transporting V0 subunit c protein-coding 514.5-2 chr16 48831284 48831723 + 2 NA Intergenic Intergenic -221323 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 800.667 chr14 67221451 67222212 + 2 NA intron (NM_173526, intron 7 of 8) intron (NM_173526, intron 7 of 8) -19604 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 548.833 chr15 88454972 88455611 + 2 NA Intergenic Intergenic 12097 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 309-21 chr8 64230192 64230372 + 2 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 138276 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 415.5-7 chrX 48026575 48026940 + 2 NA Intergenic Intergenic 19016 NM_001079900 729201 Hs.319319 NM_001079900 ENSG00000171478 SPACA5B LYZL5B sperm acrosome associated 5B protein-coding 338.167-7 chr3 105443823 105444092 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 77048 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 781.666 chr5 141343142 141343747 + 2 NA promoter-TSS (NM_032011) promoter-TSS (NM_032011) -385 NM_018916 56112 Hs.368160 NM_018916 ENSG00000254245 PCDHGA3 PCDH-GAMMA-A3 protocadherin gamma subfamily A, 3 protein-coding 421.333-8 chr5 62884234 62884624 + 2 NA Intergenic L1ME3A|LINE|L1 305610 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 291.333-24 chr8 105837809 105838100 + 2 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 222549 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 580.167-6 chr5 80793030 80793463 + 2 NA intron (NM_002439, intron 19 of 23) intron (NM_002439, intron 19 of 23) -138263 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 728.834 chr8 132478780 132479512 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 1949 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 282.833-10 chr3 24607445 24607653 + 2 NA Intergenic L1M4|LINE|L1 -111841 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 232-41 chr8 54629451 54629615 + 2 NA exon (NM_006269, exon 4 of 4) exon (NM_006269, exon 4 of 4) 13437 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 340.333-9 chr2 18803056 18803344 + 2 NA Intergenic L2c|LINE|L2 -213620 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 298.833-9 chr3 58049432 58049724 + 2 NA intron (NM_001164318, intron 1 of 45) intron (NM_001164318, intron 1 of 45) 41156 NM_001164317 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 698.833 chr12 52023829 52024319 + 2 NA intron (NM_001202233, intron 1 of 7) MIR3|SINE|MIR 1242 NM_001202233 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 670.666 chr1 9626829 9627654 + 2 NA Intergenic CpG -24490 NM_005026 5293 Hs.518451 NM_005026 ENSG00000171608 PIK3CD APDS|IMD14|P110DELTA|PI3K|p110D phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta protein-coding 432.5 chr11 22785171 22785425 + 2 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 44081 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 352.5-14 chr6 89178066 89178286 + 2 NA 3' UTR (NM_002042, exon 10 of 10) 3' UTR (NM_002042, exon 10 of 10) 32121 NM_001010853 135293 Hs.356247 NM_001010853 ENSG00000146281 PM20D2 ACY1L2 peptidase M20 domain containing 2 protein-coding 339.333-5 chr16 65616856 65617193 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -40724 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 592.001-2 chr7 85282576 85283150 + 2 NA Intergenic Intergenic -138259 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 244-36 chr7 86648070 86648225 + 2 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 4233 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 234-32 chr6 55437017 55437170 + 2 NA intron (NR_109869, intron 4 of 4) intron (NR_109869, intron 4 of 4) 109624 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 239.5-6 chr12 60924517 60924761 + 2 NA Intergenic L1MC3|LINE|L1 1235269 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 537.001-2 chr19 47743543 47744023 + 2 NA TTS (NM_014601) TTS (NM_014601) -1763 NM_015710 29997 Hs.421907 NM_015710 ENSG00000105373 NOP53 GLTSCR2|PICT-1|PICT1 NOP53 ribosome biogenesis factor protein-coding 309-7 chr11 60612095 60612483 + 2 NA Intergenic Intergenic -3462 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 221.667-32 chr3 110349754 110349960 + 2 NA Intergenic Intergenic 720102 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 190.5-19 chr16 5937649 5937834 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -81283 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 713.666-2 chr4 13653865 13654709 + 2 NA promoter-TSS (NR_121681) promoter-TSS (NR_121681) -892 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 357-11 chr3 103328482 103328709 + 2 NA Intergenic Intergenic 195521 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 639.333 chr5 44862737 44863252 + 2 NA Intergenic Intergenic 54047 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 324.667-7 chr14 27543289 27543585 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -69151 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 387-21 chr8 82852988 82853248 + 2 NA Intergenic Intergenic -58986 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 424.666-7 chr8 25869036 25869531 + 2 NA intron (NM_022659, intron 10 of 15) intron (NM_022659, intron 10 of 15) 176130 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 304.5-15 chr2 217547081 217547278 + 2 NA intron (NR_026597, intron 2 of 12) L1ME1|LINE|L1 209414 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 318.5-8 chr4 115004388 115004562 + 2 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 109145 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 587.167-2 chr10 87735180 87735908 + 2 NA intron (NM_001015880, intron 9 of 12) intron (NM_001015880, intron 9 of 12) 75666 NM_004670 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 374.001-3 chr3 128589652 128589903 + 2 NA Intergenic L1MC1|LINE|L1 -13691 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 410.666 chr12 86422553 86422965 + 2 NA intron (NM_001351286, intron 3 of 7) intron (NM_001351286, intron 3 of 7) -165460 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 331-9 chr11 120337962 120338251 + 2 NA intron (NM_015313, intron 1 of 40) intron (NM_015313, intron 1 of 40) 1693 NM_015313 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 372.667-9 chr5 93899555 93899774 + 2 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -158064 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 398.333-14 chr6 68958221 68958846 + 2 NA intron (NM_001704, intron 8 of 31) intron (NM_001704, intron 8 of 31) 323251 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 488.667 chr10 6417021 6417331 + 2 NA intron (NM_001323267, intron 17 of 17) intron (NM_001323267, intron 17 of 17) 66860 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 210-8 chr12 811209 811324 + 2 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 58343 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 351.667-15 chr7 6491741 6492076 + 2 NA Intergenic AluSx1|SINE|Alu -7756 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 339.166-4 chr5 159981875 159982114 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -27106 NM_001282500 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 378.667-5 chr2 15054095 15054430 + 2 NA Intergenic MIRb|SINE|MIR 421545 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 288-5 chr11 31589201 31589431 + 2 NA intron (NM_001288725, intron 3 of 10) intron (NM_001288725, intron 3 of 10) 79549 NM_001288726 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 344.333-3 chr11 10878606 10878817 + 2 NA non-coding (NR_034137, exon 3 of 3) non-coding (NR_034137, exon 3 of 3) 20494 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 384.5-6 chr21 26769411 26769874 + 2 NA Intergenic Intergenic 75767 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 260.667-14 chr15 63312721 63312907 + 2 NA Intergenic Intergenic 35209 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 448.834-2 chr16 85369813 85370358 + 2 NA Intergenic Intergenic -63760 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 533.833-2 chr2 200300416 200300989 + 2 NA Intergenic Intergenic -5177 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 192.667-33 chr7 993072 993368 + 2 NA intron (NR_156697, intron 4 of 4) intron (NR_156697, intron 4 of 4) 10039 NM_017781 54905 Hs.272795 NM_017781 ENSG00000073067 CYP2W1 - cytochrome P450 family 2 subfamily W member 1 protein-coding 181.5-15 chr13 113909015 113909179 + 2 NA intron (NM_001278674, intron 3 of 7) intron (NM_001278674, intron 3 of 7) 13994 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 343.5-8 chr2 65545995 65546199 + 2 NA Intergenic L2b|LINE|L2 -113498 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 224.667-39 chr5 132167243 132167461 + 2 NA Intergenic L1MB7|LINE|L1 -17524 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 358.666-5 chr2 166901960 166902284 + 2 NA intron (NM_152381, intron 1 of 10) intron (NM_152381, intron 1 of 10) 13635 NM_152381 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 514.667-5 chr16 53775857 53776704 + 2 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 72124 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 392-4 chr2 220779526 220779919 + 2 NA Intergenic L1PA16|LINE|L1 792582 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 431-3 chr11 78127277 78127619 + 2 NA intron (NM_001007027, intron 1 of 13) intron (NM_001007027, intron 1 of 13) 12178 NM_024079 79053 Hs.503368 NM_024079 ENSG00000159063 ALG8 CDG1H|PCLD3 ALG8 alpha-1,3-glucosyltransferase protein-coding 344.667-13 chr7 18751248 18751465 + 2 NA intron (NM_058176, intron 13 of 22) intron (NM_058176, intron 13 of 22) 242086 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 324.667-5 chr12 81379638 81379966 + 2 NA intron (NM_001282536, intron 6 of 29) intron (NM_001282536, intron 6 of 29) -10388 NM_001220480 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 355.667-6 chr19 48468915 48469257 + 2 NA promoter-TSS (NM_004228) promoter-TSS (NM_004228) -122 NM_017457 9266 Hs.144011 NM_004228 ENSG00000105443 CYTH2 ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2 cytohesin 2 protein-coding 332.5-10 chr22 31515921 31516347 + 2 NA intron (NM_001258326, intron 2 of 30) L1M5|LINE|L1 19598 NM_001258327 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 295.667-13 chr20 55059134 55059296 + 2 NA Intergenic Intergenic -363828 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 202.667-18 chr2 36411639 36411848 + 2 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 55965 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 235 chr1 109651131 109651329 + 2 NA Intergenic MER110-int|LTR|ERV1 -4846 NR_024538 2948 Hs.348387 NM_000850 ENSG00000168765 GSTM4 GSTM4-4|GTM4 glutathione S-transferase mu 4 protein-coding 264-3 chr1 204924225 204924419 + 2 NA intron (NM_001160332, intron 2 of 27) intron (NM_001160332, intron 2 of 27) -19904 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 323.5-17 chr6 143938345 143938588 + 2 NA TTS (NM_001013623) TTS (NM_001013623) 22944 NM_001317157 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 645.334 chr19 56314608 56315247 + 2 NA promoter-TSS (NM_001322064) promoter-TSS (NM_001322064) -88 NM_001322065 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 498.5-2 chr2 132416698 132417338 + 2 NA 5' UTR (NM_001508, exon 1 of 2) 5' UTR (NM_001508, exon 1 of 2) 213 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 292 chr1 177562660 177562903 + 2 NA Intergenic LTR16D|LTR|ERVL -137743 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 230.167-17 chr8 53692526 53692667 + 2 NA Intergenic Intergenic 150446 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 482-10 chr3 178222958 178223391 + 2 NA Intergenic Intergenic -196027 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 351.334-5 chr3 2950697 2951019 + 2 NA intron (NM_175607, intron 13 of 24) L2a|LINE|L2 58643 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 315.833-7 chr2 142980952 142981342 + 2 NA intron (NM_001199241, intron 9 of 14) intron (NM_001199241, intron 9 of 14) 103483 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 323.333-14 chr20 51134716 51134913 + 2 NA Intergenic MER49|LTR|ERV1 -111707 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 455 chr13 62358431 62358869 + 2 NA Intergenic L1M1|LINE|L1 34993 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 416-6 chr3 102416090 102416353 + 2 NA Intergenic Intergenic -18794 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 199-45 chr6 145429263 145429376 + 2 NA Intergenic L2a|LINE|L2 257558 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 321.999-5 chr8 105565265 105565482 + 2 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 245830 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 182.333-17 chr22 26392620 26392807 + 2 NA Intergenic Intergenic -36547 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 328.334-9 chr7 42661070 42661477 + 2 NA TTS (NR_110833) TTS (NR_110833) 45174 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 254.666-12 chrX 67163616 67163814 + 2 NA Intergenic L1MA1|LINE|L1 -380306 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 385.334-5 chr3 21894635 21894935 + 2 NA Intergenic Intergenic -62354 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 295-31 chr9 92686930 92687169 + 2 NA Intergenic Intergenic -16918 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 372.666-11 chr9 93993761 93994009 + 2 NA Intergenic LTR51|LTR|ERV1 -36928 NM_001253830 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 440.666 chr2 197012010 197012647 + 2 NA intron (NM_001367496, intron 18 of 27) intron (NM_001367496, intron 18 of 27) -85621 NM_024989 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 512.667 chr1 110029536 110030346 + 2 NA Intergenic Intergenic -1636 NM_001270768 85369 Hs.584996 NM_033088 ENSG00000143093 STRIP1 FAM40A|FAR11A striatin interacting protein 1 protein-coding 298.667-18 chr5 136414665 136414920 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -49316 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 397.667-7 chr22 25643334 25643682 + 2 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 78833 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 375-10 chr18 13357603 13357883 + 2 NA intron (NM_181482, intron 2 of 5) L1MC5|LINE|L1 69791 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 247.833-16 chr4 73311454 73311707 + 2 NA Intergenic Intergenic -52782 NM_032217 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 559.5-3 chr9 70338623 70339005 + 2 NA intron (NM_015110, intron 17 of 24) intron (NM_015110, intron 17 of 24) 75843 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 340.333-18 chr9 27125044 27125270 + 2 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 16016 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 308-9 chr16 9918549 9918812 + 2 NA intron (NM_001134408, intron 3 of 13) intron (NM_001134408, intron 3 of 13) 263387 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 422.667-3 chr11 72024834 72025431 + 2 NA intron (NR_104476, intron 4 of 24) AluSg|SINE|Alu 10841 NR_104178 100128494 Hs.713607 NR_104178 ENSG00000251143 LOC100128494 - uncharacterized LOC100128494 ncRNA 274.5-11 chr2 80184207 80184610 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 120344 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 527-3 chr16 62205396 62205714 + 2 NA Intergenic Intergenic -169117 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 311.5-23 chr8 108080036 108080548 + 2 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 1647 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 325-19 chr9 132407564 132407778 + 2 NA promoter-TSS (NM_007344) promoter-TSS (NM_007344) -820 NM_001205296 7270 Hs.54780 NM_007344 ENSG00000125482 TTF1 TTF-1|TTF-I transcription termination factor 1 protein-coding 313-5 chr22 16834374 16834554 + 2 NA Intergenic L1MDa|LINE|L1 6990 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 343-11 chrX 86722624 86723214 + 2 NA intron (NM_001139515, intron 6 of 11) L1M2|LINE|L1 459951 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 471.833-2 chr16 58734312 58734643 + 2 NA promoter-TSS (NM_002080) promoter-TSS (NM_002080) -161 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 318-18 chr6 25489524 25489817 + 2 NA intron (NM_001173977, intron 13 of 36) intron (NM_001173977, intron 13 of 36) -162545 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 261.833-12 chr2 108928562 108928976 + 2 NA intron (NM_022336, intron 4 of 11) intron (NM_022336, intron 4 of 11) 60451 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 522.5-3 chr8 111963973 111964403 + 2 NA Intergenic L1P4a|LINE|L1 587549 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 309.333-19 chr6 84894718 84894949 + 2 NA Intergenic Intergenic -130235 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 540.667-2 chr10 89134756 89135226 + 2 NA Intergenic L1M5|LINE|L1 -71580 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 323.333-16 chr22 33578799 33579216 + 2 NA intron (NM_133642, intron 5 of 14) intron (NM_133642, intron 5 of 14) 125913 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 215.834 chr1 20375603 20375814 + 2 NA intron (NR_033887, intron 9 of 11) intron (NR_033887, intron 9 of 11) 53086 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 542.167-2 chr11 108897313 108898070 + 2 NA intron (NM_004398, intron 16 of 17) LTR49-int|LTR|ERV1 232622 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 299.5-8 chr15 71442788 71443038 + 2 NA intron (NM_024817, intron 6 of 16) L2a|LINE|L2 -104323 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 395.5-10 chrX 131728882 131729095 + 2 NA intron (NR_026975, intron 10 of 12) intron (NR_026975, intron 10 of 12) 101655 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 369.167-10 chr8 70360782 70361203 + 2 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 42398 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 309.667-16 chr4 28684367 28684588 + 2 NA Intergenic L2a|LINE|L2 -135105 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 284.333-11 chr17 71188769 71189050 + 2 NA intron (NR_104152, intron 1 of 3) intron (NR_104152, intron 1 of 3) 13270 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 225.167-25 chr4 75514326 75514453 + 2 NA promoter-TSS (NM_001278536) promoter-TSS (NM_001278536) 41 NM_001278536 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 470.667-4 chr8 140204876 140205220 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -104513 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 515.334-3 chr12 64569627 64570147 + 2 NA Intergenic AluSp|SINE|Alu -40608 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 585.333-2 chr15 67733553 67734056 + 2 NA intron (NM_001206804, intron 17 of 21) intron (NM_001206804, intron 17 of 21) -91705 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 763.833-3 chr9 104386402 104386888 + 2 NA Intergenic Intergenic 116416 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 210.5-12 chr14 52552589 52552715 + 2 NA promoter-TSS (NM_001099652) promoter-TSS (NM_001099652) -69 NM_001160047 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 285.333-8 chr4 116595487 116595742 + 2 NA Intergenic Intergenic 295889 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 311.333-13 chr2 182126200 182126428 + 2 NA intron (NR_048566, intron 5 of 5) intron (NR_048566, intron 5 of 5) 115749 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 307.5-14 chr17 61042310 61042553 + 2 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 325273 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 550-5 chr20 59086536 59086972 + 2 NA Intergenic Intergenic -43908 NR_037930 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 259-44 chr8 113784345 113784526 + 2 NA Intergenic L1MCb|LINE|L1 -347496 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 270-30 chr4 33519965 33520201 + 2 NA Intergenic Intergenic 519810 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 248-11 chr11 39677630 39677758 + 2 NA Intergenic Intergenic 615436 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 163.333-31 chr2 198742580 198742730 + 2 NA Intergenic Intergenic -367558 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 246-25 chr5 68362061 68362291 + 2 NA Intergenic L1MEg|LINE|L1 69599 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 271.333-27 chr8 29969969 29970211 + 2 NA Intergenic MIR|SINE|MIR -12742 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 312-11 chr17 77066692 77067024 + 2 NA Intergenic Intergenic -21785 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 235.5-19 chr5 155142821 155143168 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 129239 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 274.5 chr10 37522409 37522625 + 2 NA Intergenic Intergenic 80414 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 405.667-8 chr7 134462493 134462776 + 2 NA Intergenic L1M2c|LINE|L1 -3395 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 314-16 chr3 103870335 103870657 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -346380 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 190.667-35 chr22 50473323 50473448 + 2 NA intron (NM_001365819, intron 1 of 39) intron (NM_001365819, intron 1 of 39) 1650 NM_001365819 6305 Hs.589924 NM_002972 ENSG00000100241 SBF1 CMT4B3|DENND7A|MTMR5 SET binding factor 1 protein-coding 362.5-5 chr13 94617561 94617945 + 2 NA intron (NM_180989, intron 3 of 8) intron (NM_180989, intron 3 of 8) 15896 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 360.667-3 chr2 119757161 119757502 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -2591 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 409 chr1 32730185 32730420 + 2 NA Intergenic Intergenic -11528 NM_020888 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 349.5-13 chr6 137076496 137076768 + 2 NA Intergenic Intergenic -31452 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 367.5-4 chr4 189129538 189129902 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 353063 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 279-12 chr16 6122462 6122679 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 102867 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 192.5-50 chr8 117910150 117910248 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 10714 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 374.667-5 chr11 93451307 93451507 + 2 NA Intergenic Intergenic 91984 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 290.667-24 chr9 28139312 28139458 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -565519 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 390.5-5 chr2 176448172 176448499 + 2 NA Intergenic Intergenic 152717 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 212-38 chr5 28346638 28346762 + 2 NA Intergenic Intergenic -59035 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 187.334-2 chr15 52252901 52253040 + 2 NA intron (NM_018728, intron 12 of 40) MamGypsy2-I|LTR|Gypsy 24230 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 369.333-3 chr22 25004842 25005185 + 2 NA Intergenic Intergenic -22961 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 716-2 chr11 67505821 67506679 + 2 NA promoter-TSS (NM_001130848) promoter-TSS (NM_001130848) -887 NM_001130848 9600 Hs.372295 NM_004910 ENSG00000110697 PITPNM1 DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9 phosphatidylinositol transfer protein membrane associated 1 protein-coding 428-2 chr11 95148692 95148943 + 2 NA Intergenic Intergenic -1722 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 458.5 chr17 42388520 42388944 + 2 NA promoter-TSS (NM_139276) promoter-TSS (NM_139276) -237 NM_139276 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 508.834 chr10 33005426 33005861 + 2 NA Intergenic Intergenic -47413 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 522.001 chr2 174078452 174078965 + 2 NA intron (NM_001011708, intron 9 of 9) intron (NM_001011708, intron 9 of 9) 53428 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 336-13 chr3 56236500 56236856 + 2 NA intron (NR_132749, intron 3 of 17) intron (NR_132749, intron 3 of 17) 231789 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 255.5-9 chr12 22110972 22111321 + 2 NA Intergenic Intergenic 64928 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 487-6 chrX 104270620 104271128 + 2 NA Intergenic Intergenic -15941 NM_153448 80712 Hs.223782 NM_153448 ENSG00000123576 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 238.333-28 chr3 154479213 154479652 + 2 NA Intergenic Intergenic -49242 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 497.001 chr12 130026433 130026845 + 2 NA Intergenic Intergenic 15703 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 488.999-3 chr3 180811439 180811900 + 2 NA intron (NR_109986, intron 2 of 13) intron (NR_109986, intron 2 of 13) 58509 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 413-8 chr20 50790244 50790784 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -4380 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 342-8 chr2 190530075 190530362 + 2 NA intron (NR_136298, intron 1 of 8) intron (NR_136298, intron 1 of 8) 4504 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 500.667-3 chr9 93681875 93682268 + 2 NA Intergenic Intergenic 87230 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 323-8 chr15 89487440 89487721 + 2 NA intron (NM_001321041, intron 1 of 10) intron (NM_001321041, intron 1 of 10) 9003 NM_001321041 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 347.333-14 chr4 75515359 75515727 + 2 NA intron (NM_001317791, intron 2 of 3) intron (NM_001317791, intron 2 of 3) 1070 NM_001317791 152815 Hs.479971 NM_144721 ENSG00000174796 THAP6 - THAP domain containing 6 protein-coding 242-16 chr2 148025446 148025624 + 2 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -3931 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 222.5-17 chr16 84542041 84542200 + 2 NA Intergenic Intergenic -37461 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 287.333-6 chr2 144429256 144429572 + 2 NA intron (NM_014795, intron 3 of 9) intron (NM_014795, intron 3 of 9) -90200 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 233.333-24 chr5 27236264 27236383 + 2 NA Intergenic Intergenic -197737 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 339-9 chr2 63017462 63017760 + 2 NA intron (NM_001142615, intron 19 of 22) intron (NM_001142615, intron 19 of 22) 30100 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 423-4 chr14 26636031 26636365 + 2 NA intron (NR_147061, intron 1 of 6) intron (NR_147061, intron 1 of 6) 37551 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 360.5-12 chr9 90591481 90591772 + 2 NA Intergenic L1MD2|LINE|L1 -8880 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 399-3 chr10 60904754 60905056 + 2 NA intron (NM_001350906, intron 5 of 12) intron (NM_001350906, intron 5 of 12) 39280 NM_001350910 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 337-5 chr16 3269086 3269501 + 2 NA Intergenic Intergenic 5525 NR_033904 283876 Hs.592092 NR_033904 ENSG00000281005 LINC00921 - long intergenic non-protein coding RNA 921 ncRNA 668.001-4 chr3 124901271 124901902 + 2 NA promoter-TSS (NM_001354764) promoter-TSS (NM_001354764) -175 NM_001354766 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 259.667-4 chr12 39806997 39807271 + 2 NA intron (NR_135051, intron 18 of 18) MADE1|DNA|TcMar-Mariner 180951 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 710.667 chr1 13422707 13423375 + 2 NA Intergenic AluSp|SINE|Alu 12591 NM_001099852 645425 NM_001099852 ENSG00000204478 PRAMEF20 PRAMEF21 PRAME family member 20 protein-coding 196.333-33 chr4 8688281 8688545 + 2 NA Intergenic CpG 95648 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 552.666 chr20 47677609 47678251 + 2 NA intron (NM_198596, intron 8 of 20) intron (NM_198596, intron 8 of 20) 108134 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 369.333-10 chr9 125041585 125041920 + 2 NA intron (NM_173690, intron 4 of 18) intron (NM_173690, intron 4 of 18) -100669 NM_002077 2800 Hs.59504 NM_002077 ENSG00000136935 GOLGA1 golgin-97 golgin A1 protein-coding 292.667-5 chr17 32490763 32490981 + 2 NA 3' UTR (NM_003885, exon 2 of 2) 3' UTR (NM_003885, exon 2 of 2) 3879 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 164 chr1 32282871 32282980 + 2 NA intron (NM_001042771, intron 12 of 12) intron (NM_001042771, intron 12 of 12) 8814 NM_001042771 3932 Hs.470627 NM_005356 ENSG00000182866 LCK IMD22|LSK|YT16|p56lck|pp58lck LCK proto-oncogene, Src family tyrosine kinase protein-coding 782.333-2 chr6 113994559 113995274 + 2 NA intron (NR_125845, intron 3 of 9) intron (NR_125845, intron 3 of 9) -23768 NR_033441 3066 Hs.3352 NM_001527 ENSG00000196591 HDAC2 HD2|KDAC2|RPD3|YAF1 histone deacetylase 2 protein-coding 266-18 chr4 75238385 75238532 + 2 NA Intergenic (TAGTATA)n|Simple_repeat|Simple_repeat -115618 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 253-30 chr8 22752557 22752742 + 2 NA intron (NM_001363233, intron 4 of 6) intron (NM_001363233, intron 4 of 6) -59169 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 274.167-2 chr1 43974613 43975167 + 2 NA promoter-TSS (NM_004047) promoter-TSS (NM_004047) -70 NM_001039457 533 Hs.596514 NM_004047 ENSG00000117410 ATP6V0B ATP6F|HATPL|VMA16 ATPase H+ transporting V0 subunit b protein-coding 276.667-23 chr6 145692970 145693174 + 2 NA intron (NM_001360064, intron 1 of 3) L1PREC2|LINE|L1 -6195 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 280.666-5 chr6 62868600 62868839 + 2 NA Intergenic SATR1|Satellite|Satellite 451258 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 912.666-3 chr3 137014004 137014893 + 2 NA Intergenic Intergenic 56465 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 309.5-17 chr5 149128191 149128478 + 2 NA Intergenic Intergenic -13113 NM_001301018 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 240.833-6 chr16 35492213 35492495 + 2 NA Intergenic Intergenic -11758 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 814.333 chr11 7143884 7144465 + 2 NA Intergenic Intergenic 55176 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 383.667-2 chr14 46249935 46250295 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 185956 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 431-7 chr17 3734210 3734673 + 2 NA intron (NM_002208, intron 21 of 30) LTR65|LTR|ERV1 10538 NM_031965 83903 Hs.534059 NM_031965 ENSG00000177602 HASPIN GSG2 histone H3 associated protein kinase protein-coding 356 chr1 28235967 28236218 + 2 NA promoter-TSS (NM_016311) promoter-TSS (NM_016311) 1 NM_178191 93974 Hs.744914 NM_016311 ENSG00000130770 ATP5IF1 ATPI|ATPIF1|ATPIP|IP ATP synthase inhibitory factor subunit 1 protein-coding 352.5-11 chr4 46386526 46386703 + 2 NA intron (NM_001114175, intron 1 of 8) intron (NM_001114175, intron 1 of 8) 2765 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 563-5 chr8 127743160 127743809 + 2 NA TTS (NM_001354870) TTS (NM_001354870) 7253 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 559.5 chr11 66592774 66593151 + 2 NA promoter-TSS (NM_005125) promoter-TSS (NM_005125) 101 NM_018219 55231 Hs.121072 NM_018219 ENSG00000182791 CCDC87 - coiled-coil domain containing 87 protein-coding 378.833-9 chr8 62130868 62131247 + 2 NA Intergenic Intergenic -117797 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 421.501-2 chr8 92073061 92073514 + 2 NA intron (NM_001198632, intron 1 of 11) intron (NM_001198632, intron 1 of 11) -10653 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 420-9 chr5 10098317 10098649 + 2 NA Intergenic Intergenic 151405 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 378.5-7 chr21 30826923 30827285 + 2 NA Intergenic L3|LINE|CR1 2655 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 515 chr18 55351035 55351322 + 2 NA intron (NM_001348217, intron 5 of 18) intron (NM_001348217, intron 5 of 18) -29337 NM_001348214 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 436 chr17 34857306 34857576 + 2 NA Intergenic Intergenic 104019 NM_001193530 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 992.001 chrX 131703924 131705168 + 2 NA intron (NR_026975, intron 12 of 12) intron (NR_026975, intron 12 of 12) 126097 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 469.333-5 chr3 138921731 138922256 + 2 NA Intergenic MIR3|SINE|MIR 22027 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 559.333-3 chr3 182710487 182711165 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -82678 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 413.667 chr1 7647398 7647827 + 2 NA intron (NM_001349608, intron 6 of 21) intron (NM_001349608, intron 6 of 21) -22118 NM_001349614 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 718.5-3 chr3 171830147 171830564 + 2 NA Intergenic Intergenic -12994 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 635.5 chr3 168510867 168511763 + 2 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) -40539 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 299.333-9 chr16 3820087 3820259 + 2 NA intron (NM_004380, intron 2 of 30) intron (NM_004380, intron 2 of 30) 59947 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 454-5 chr2 35168359 35168793 + 2 NA Intergenic Intergenic -302829 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 570.5-2 chr11 22848105 22848835 + 2 NA intron (NM_001195637, intron 3 of 3) intron (NM_001195637, intron 3 of 3) 12004 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 873.5-2 chr3 104596135 104596981 + 2 NA Intergenic Intergenic -770155 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 178-7 chr10 95816904 95817025 + 2 NA intron (NM_001312654, intron 2 of 9) MIR|SINE|MIR 60801 NM_001776 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 339.667-11 chr17 77605218 77605529 + 2 NA Intergenic Intergenic 58432 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 407.334-4 chr19 48321373 48322201 + 2 NA 5' UTR (NM_001364171, exon 1 of 16) 5' UTR (NM_001364171, exon 1 of 16) 184 NM_001364171 93233 Hs.112645 NM_144577 ENSG00000105479 CCDC114 CILD20 coiled-coil domain containing 114 protein-coding 275.333-11 chr2 219122980 219123231 + 2 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) 37760 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 365.333-10 chr9 132075433 132075794 + 2 NA intron (NM_001253882, intron 2 of 2) intron (NM_001253882, intron 2 of 2) 4254 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 319.667-11 chr6 162368660 162368879 + 2 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -358363 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 313.666 chr1 47566733 47567307 + 2 NA Intergenic Intergenic -129703 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 531.334 chr5 10452483 10453096 + 2 NA intron (NM_001201466, intron 4 of 5) intron (NM_001201466, intron 4 of 5) 10910 NM_031916 83853 Hs.381089 NM_031916 ENSG00000145491 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1 like protein-coding 392.5-5 chr2 74918174 74918493 + 2 NA intron (NR_125792, intron 1 of 4) L2a|LINE|L2 9202 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 593.001 chr6 34249084 34249526 + 2 NA promoter-TSS (NM_178508) promoter-TSS (NM_178508) -197 NR_155741 221491 Hs.381300 NM_178508 ENSG00000186577 SMIM29 C6orf1|LBH small integral membrane protein 29 protein-coding 733.168 chr1 111769468 111770124 + 2 NA Intergenic Intergenic 13895 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 914-2 chr9 124126472 124127235 + 2 NA Intergenic Intergenic 115085 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 248.667-10 chr13 86985800 86985970 + 2 NA Intergenic Intergenic 73965 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 181.334 chr1 93874234 93874371 + 2 NA intron (NM_014597, intron 3 of 6) MER20|DNA|hAT-Charlie 4904 NM_014597 30836 Hs.85769 NM_014597 ENSG00000067334 DNTTIP2 ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2 deoxynucleotidyltransferase terminal interacting protein 2 protein-coding 352.333-4 chr11 126303032 126303250 + 2 NA promoter-TSS (NM_001350236) promoter-TSS (NM_001350236) -919 NM_001350236 28960 Hs.504249 NM_014026 ENSG00000110063 DCPS ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015 decapping enzyme, scavenger protein-coding 317.333-7 chr2 63772557 63772836 + 2 NA Intergenic L1ME3|LINE|L1 -68268 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 1216.17 chr10 29129589 29130950 + 2 NA Intergenic Intergenic -158801 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 540.667-5 chr2 48579795 48580213 + 2 NA promoter-TSS (NM_001198594) promoter-TSS (NM_001198594) -583 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 193.333-4 chr10 36682760 36682901 + 2 NA Intergenic Intergenic -443027 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 178-30 chr4 17914673 17914802 + 2 NA intron (NR_158563, intron 4 of 5) intron (NR_158563, intron 4 of 5) 103758 NM_022346 64151 Hs.567567 NM_022346 ENSG00000109805 NCAPG CAPG|CHCG|NY-MEL-3|YCG1 non-SMC condensin I complex subunit G protein-coding 596.5-2 chr6 87029584 87030156 + 2 NA Intergenic Intergenic 65236 NM_001252383 1081 Hs.119689 NM_000735 ENSG00000135346 CGA CG-ALPHA|FSHA|GPA1|GPHA1|GPHa|HCG|LHA|TSHA glycoprotein hormones, alpha polypeptide protein-coding 482.5-2 chr18 68662963 68663254 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 52000 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 224-33 chr3 104965492 104965663 + 2 NA Intergenic L1ME3B|LINE|L1 -401136 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 357.5-13 chr7 41676535 41676960 + 2 NA Intergenic MIR|SINE|MIR -17172 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 399.333 chr1 192546204 192546429 + 2 NA Intergenic Intergenic -29457 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 443.334-6 chr5 59685517 59685784 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 18053 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 307-17 chr9 34631788 34631982 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -3871 NM_001017363 138715 Hs.534549 NM_001017363 ENSG00000205143 ARID3C - AT-rich interaction domain 3C protein-coding 230.667-6 chr11 102425098 102425224 + 2 NA intron (NM_052932, intron 2 of 4) intron (NM_052932, intron 2 of 4) 27604 NM_052932 114908 Hs.503709 NM_052932 ENSG00000152558 TMEM123 KCT3|PORIMIN|PORMIN transmembrane protein 123 protein-coding 623.667-4 chr9 127942515 127943186 + 2 NA 3' UTR (NM_203305, exon 8 of 8) 3' UTR (NM_203305, exon 8 of 8) -4366 NM_003863 8818 Hs.108973 NM_003863 ENSG00000136908 DPM2 CDG1U dolichyl-phosphate mannosyltransferase subunit 2, regulatory protein-coding 380-4 chr10 25161187 25161426 + 2 NA TTS (NR_120649) TTS (NR_120649) -13695 NM_020752 57512 Hs.499108 NM_020752 ENSG00000151025 GPR158 - G protein-coupled receptor 158 protein-coding 795.833 chr2 237027355 237028017 + 2 NA Intergenic Intergenic 28481 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 454.167-3 chr3 120507160 120507685 + 2 NA Intergenic MER50-int|LTR|ERV1 -56430 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 437-10 chr6 136281977 136282578 + 2 NA intron (NM_001363659, intron 2 of 11) intron (NM_001363659, intron 2 of 11) 7569 NM_001077441 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 332-23 chr6 23596122 23596355 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -529977 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 270-21 chr17 65478040 65478191 + 2 NA Intergenic (ACATA)n|Simple_repeat|Simple_repeat 20574 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 240-7 chr11 24484777 24484945 + 2 NA Intergenic L1MEf|LINE|L1 -12192 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 523.501 chr11 96343257 96343790 + 2 NA promoter-TSS (NM_032427) promoter-TSS (NM_032427) -328 NM_032427 84441 Hs.428214 NM_032427 ENSG00000184384 MAML2 MAM-3|MAM2|MAM3|MLL-MAML2 mastermind like transcriptional coactivator 2 protein-coding 411-5 chr8 47304727 47305162 + 2 NA intron (NR_104581, intron 5 of 16) MSTD|LTR|ERVL-MaLR 44006 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 653.833 chr1 240731665 240732781 + 2 NA Intergenic AluSc|SINE|Alu -120068 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 564-7 chr16 66650586 66651572 + 2 NA intron (NM_181521, intron 1 of 3) intron (NM_181521, intron 1 of 3) 45664 NM_178818 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 296-15 chr7 54609142 54609389 + 2 NA Intergenic (TCTAT)n|Simple_repeat|Simple_repeat 52295 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 596.167-3 chr16 67841713 67842306 + 2 NA promoter-TSS (NM_020457) promoter-TSS (NM_020457) -311 NM_020457 57215 Hs.632200 NM_020457 ENSG00000168286 THAP11 CTG-B43a|CTG-B45d|HRIHFB2206|RONIN THAP domain containing 11 protein-coding 361.334 chr1 114325201 114325533 + 2 NA Intergenic L1M5|LINE|L1 -171498 NM_001366224 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 902.001 chrX 53831665 53832531 + 2 NA Intergenic L1MA7|LINE|L1 -145379 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 281-12 chr2 60050372 60050659 + 2 NA Intergenic L1ME1|LINE|L1 332521 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 286-22 chr6 158730431 158730782 + 2 NA intron (NM_001242394, intron 11 of 17) HERVIP10FH-int|LTR|ERV1 34147 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 303.667-8 chr19 31297494 31297695 + 2 NA intron (NM_020856, intron 1 of 1) AluJr|SINE|Alu 51842 NR_138034 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 224.667-34 chr3 137012223 137012339 + 2 NA Intergenic MER94|DNA|hAT-Blackjack 54298 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 509 chr10 69318380 69318765 + 2 NA promoter-TSS (NM_000188) promoter-TSS (NM_000188) -275 NM_000188 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 422.333-3 chr2 176431186 176431417 + 2 NA Intergenic MIRb|SINE|MIR 161859 NM_001006635 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 531.5-2 chr2 42828620 42829265 + 2 NA Intergenic MIRb|SINE|MIR -36359 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 430.334-3 chr19 48698074 48698440 + 2 NA intron (NM_000511, intron 1 of 1) intron (NM_000511, intron 1 of 1) 2286 NM_001097638 2524 Hs.579928 NM_000511 ENSG00000176920 FUT2 B12QTL1|SE|SEC2|Se2|sej fucosyltransferase 2 protein-coding 365.833-5 chr19 55301948 55302224 + 2 NA intron (NM_032430, intron 8 of 18) intron (NM_032430, intron 8 of 18) 18089 NM_032430 84446 Hs.182081 NM_032430 ENSG00000160469 BRSK1 hSAD1 BR serine/threonine kinase 1 protein-coding 296.334-7 chr17 32738658 32738917 + 2 NA intron (NM_015194, intron 13 of 21) intron (NM_015194, intron 13 of 21) 138337 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 611.499-2 chr9 135087100 135087590 + 2 NA promoter-TSS (NM_001282612) promoter-TSS (NM_001282612) 85 NM_001282612 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 328.5 chr1 117905543 117905729 + 2 NA intron (NM_001135589, intron 6 of 12) L2c|LINE|L2 23985 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 515-8 chr7 12523982 12524385 + 2 NA intron (NR_136263, intron 1 of 3) MIR|SINE|MIR 19786 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 224.833-29 chrX 44219004 44219278 + 2 NA intron (NM_025184, intron 11 of 14) L1ME2z|LINE|L1 124531 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 374.167-3 chr15 66774485 66774961 + 2 NA intron (NR_027654, intron 4 of 4) L1ME2|LINE|L1 72487 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 479.5-3 chr19 50590434 50590863 + 2 NA Intergenic AluSx3|SINE|Alu -14315 NR_004384 100126781 Hs.707968 NR_004384 SNAR-F - small NF90 (ILF3) associated RNA F snRNA 1153.5 chr3 185176380 185177516 + 2 NA intron (NR_038990, intron 1 of 6) intron (NR_038990, intron 1 of 6) 14047 NR_038990 339926 Hs.567848 NR_038990 ENSG00000223358 EHHADH-AS1 - EHHADH antisense RNA 1 ncRNA 503-3 chr3 78655858 78656319 + 2 NA intron (NM_002941, intron 18 of 30) intron (NM_002941, intron 18 of 30) 363371 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 421.5-7 chr8 116993854 116994161 + 2 NA intron (NM_001172811, intron 2 of 9) L1ME3A|LINE|L1 43032 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 710.666 chr9 34899494 34900213 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -4089 NM_001309427 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 291-7 chr10 104268486 104269172 + 2 NA promoter-TSS (NR_039702) promoter-TSS (NR_039702) -44 NM_001191013 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 254.667-13 chr17 61307776 61307969 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 59832 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 208.5-10 chr13 96467588 96467716 + 2 NA intron (NM_153456, intron 1 of 1) MIR|SINE|MIR 40423 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 196.667-5 chr10 106426453 106426566 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 286344 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 290.667-16 chr6 62940820 62941122 + 2 NA Intergenic Intergenic 379006 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 254.5-31 chr6 106334838 106335216 + 2 NA Intergenic Intergenic -9207 NM_001286107 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 876.833 chr1 36703426 36704147 + 2 NA Intergenic Intergenic -220472 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 333.833-12 chr6 115644349 115644538 + 2 NA promoter-TSS (NR_134602) promoter-TSS (NR_134602) -608 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 353.333-5 chr12 10558290 10558512 + 2 NA non-coding (NR_146455, exon 2 of 2) non-coding (NR_146455, exon 2 of 2) 5022 NR_146455 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 198.5-16 chr17 60898101 60898381 + 2 NA intron (NM_001330413, intron 10 of 25) L1PB4|LINE|L1 220390 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 185.833-12 chr19 10835667 10835825 + 2 NA promoter-TSS (NR_104015) promoter-TSS (NR_104015) -6 NR_104015 11018 Hs.211463 NM_006858 ENSG00000099203 TMED1 IL1RL1LG|Il1rl1l|Tp24|p24g1 transmembrane p24 trafficking protein 1 protein-coding 315.667-2 chr10 74309043 74309384 + 2 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 132450 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 322.667-7 chr14 52270461 52270790 + 2 NA intron (NM_001281469, intron 2 of 2) MER58D|DNA|hAT-Charlie 2927 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 287.5-5 chr14 68826592 68826814 + 2 NA Intergenic L1MB3|LINE|L1 -30460 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 386.5-2 chr11 96756066 96756521 + 2 NA Intergenic L1ME3A|LINE|L1 247868 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 204-36 chr6 100338630 100338815 + 2 NA Intergenic Intergenic 124953 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 254.667-8 chr14 94433830 94434113 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 18829 NM_001080451 256394 Hs.145890 NM_001080451 ENSG00000186910 SERPINA11 - serpin family A member 11 protein-coding 224.667-12 chr12 98895849 98896041 + 2 NA promoter-TSS (NM_001352210) promoter-TSS (NM_001352210) -654 NM_001352209 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 393-4 chr4 70130345 70130789 + 2 NA Intergenic Intergenic -3037 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 265.5-7 chr12 80278217 80278444 + 2 NA intron (NM_001368062, intron 30 of 62) intron (NM_001368062, intron 30 of 62) 68877 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 489.333-3 chr14 83305139 83305573 + 2 NA Intergenic Intergenic 662724 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 368.667 chr1 58770235 58770663 + 2 NA Intergenic MIRb|SINE|MIR 13598 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 420.833-3 chr20 60517959 60518232 + 2 NA Intergenic Intergenic 39984 NR_039758 100616362 NR_039758 ENSG00000266140 MIR4533 - microRNA 4533 ncRNA 214-47 chr6 91002161 91002362 + 2 NA Intergenic L1MEd|LINE|L1 -415189 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 257.5-2 chr1 44327970 44328210 + 2 NA intron (NM_001301701, intron 2 of 7) intron (NM_001301701, intron 2 of 7) 27167 NM_001301698 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 912.668 chr21 25881453 25882388 + 2 NA intron (NM_001136131, intron 15 of 15) intron (NM_001136131, intron 15 of 15) -146266 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 236.334-11 chr2 241605079 241605306 + 2 NA intron (NM_001164356, intron 2 of 4) intron (NM_001164356, intron 2 of 4) 12309 NM_001164356 51078 Hs.435759 NM_015963 ENSG00000176946 THAP4 CGI-36|Nb(III)|PP238 THAP domain containing 4 protein-coding 260.667-6 chr1 206674951 206675193 + 2 NA Intergenic Intergenic -9833 NM_004759 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 228.667-11 chr13 49606998 49607307 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -21355 NM_138450 115761 Hs.558599 NM_138450 ENSG00000152213 ARL11 ARLTS1 ADP ribosylation factor like GTPase 11 protein-coding 492.334-4 chr7 78133899 78134507 + 2 NA intron (NM_001301128, intron 16 of 20) intron (NM_001301128, intron 16 of 20) -213039 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 278.667-17 chr20 39113841 39113998 + 2 NA Intergenic Intergenic 110829 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 224.5-30 chr4 34406909 34407115 + 2 NA Intergenic Intergenic -137265 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 299.667-3 chr11 65510722 65511344 + 2 NA Intergenic AluSx1|SINE|Alu -3601 NR_145459 109136579 Hs.621695 NR_145459 TALAM1 - MALAT1 antisense transcript ncRNA 324.667-21 chr7 10128983 10129350 + 2 NA Intergenic Intergenic 494896 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 337.667 chr1 37974875 37975516 + 2 NA intron (NM_006802, intron 12 of 16) intron (NM_006802, intron 12 of 16) 14827 NM_006802 10946 Hs.77897 NM_006802 ENSG00000183431 SF3A3 PRP9|PRPF9|SAP61|SF3a60 splicing factor 3a subunit 3 protein-coding 479-5 chr2 47388225 47388506 + 2 NA Intergenic LTR41|LTR|ERVL 10690 NR_030286 693144 NR_030286 ENSG00000207923 MIR559 MIRN559|hsa-mir-559 microRNA 559 ncRNA 452.5 chr19 30649985 30650473 + 2 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 277845 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 263.834-4 chr18 49811496 49811671 + 2 NA intron (NM_006111, intron 1 of 9) intron (NM_006111, intron 1 of 9) 1950 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 223-19 chr2 29112683 29112818 + 2 NA intron (NM_001287528, intron 1 of 14) intron (NM_001287528, intron 1 of 14) -2128 NR_109844 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 590.334 chr6 50030920 50031552 + 2 NA Intergenic L1PA16|LINE|L1 -9242 NM_001037497 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 361.833 chr2 100177983 100178265 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -30130 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 435-5 chr8 70114867 70115482 + 2 NA intron (NM_001321711, intron 21 of 21) AluSq2|SINE|Alu -43922 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 424.334-3 chr19 7341027 7341507 + 2 NA Intergenic Intergenic -7670 NM_001367823 23370 Hs.465761 NM_015318 ENSG00000104880 ARHGEF18 P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF Rho/Rac guanine nucleotide exchange factor 18 protein-coding 600.5 chr11 36672783 36673255 + 2 NA Intergenic Intergenic -74740 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 375.833-8 chr9 10366172 10366601 + 2 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 246616 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 211.833-18 chr6 34163960 34164203 + 2 NA Intergenic AluSx3|SINE|Alu -8459 NM_001256809 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 487.5-3 chr1 108699848 108700471 + 2 NA 3' UTR (NM_001349768, exon 7 of 7) 3' UTR (NM_001349768, exon 7 of 7) 7849 NM_001349767 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 423-7 chr18 13889804 13890212 + 2 NA intron (NM_001291911, intron 1 of 1) intron (NM_001291911, intron 1 of 1) 25528 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 493.333-2 chr10 101442136 101442625 + 2 NA intron (NM_001256856, intron 2 of 13) intron (NM_001256856, intron 2 of 13) 88215 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 177.833-11 chr14 32560410 32560534 + 2 NA intron (NM_004274, intron 4 of 13) intron (NM_004274, intron 4 of 13) 231174 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 410 chr10 64041130 64041442 + 2 NA Intergenic L1M3e|LINE|L1 -519396 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 331-20 chr7 74079369 74079548 + 2 NA Intergenic Intergenic -4346 NM_002314 3984 Hs.647035 NM_002314 ENSG00000106683 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 237-18 chr2 36423303 36423487 + 2 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 67617 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 312-12 chr18 1410226 1410663 + 2 NA Intergenic Intergenic -50815 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 551.167 chr11 18721994 18722446 + 2 NA intron (NM_173588, intron 2 of 22) intron (NM_173588, intron 2 of 22) 3968 NM_173588 283284 Hs.434152 NM_173588 ENSG00000179057 IGSF22 IGFN2 immunoglobulin superfamily member 22 protein-coding 771.834-2 chr2 69719770 69720685 + 2 NA intron (NM_001320698, intron 2 of 14) intron (NM_001320698, intron 2 of 14) -21907 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 370.334 chr1 240698784 240698999 + 2 NA Intergenic L1ME2z|LINE|L1 -86736 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 485.499 chr8 38966415 38966869 + 2 NA intron (NM_021623, intron 10 of 11) intron (NM_021623, intron 10 of 11) -7586 NM_153692 203100 Hs.661014 NM_153692 ENSG00000169495 HTRA4 - HtrA serine peptidase 4 protein-coding 217-26 chr4 89470158 89470340 + 2 NA Intergenic L1MC4a|LINE|L1 -162449 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 428.333-3 chr3 115040651 115040943 + 2 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 30617 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 248.667-30 chr5 23994797 23994974 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 43537 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 425-3 chr11 83740279 83740627 + 2 NA intron (NM_001142699, intron 18 of 27) L1ME3A|LINE|L1 -58028 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 335.833-4 chr14 73633331 73633674 + 2 NA Intergenic Intergenic -11484 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 420-5 chr16 8878279 8878623 + 2 NA Intergenic Intergenic -9439 NM_001278260 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 574.333-2 chr2 183295234 183295656 + 2 NA Intergenic LTR13|LTR|ERVK 171002 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 173.167-35 chr5 144142259 144142533 + 2 NA Intergenic Intergenic 28263 NM_001024947 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 503-6 chr7 36473146 36473909 + 2 NA Intergenic HERVL18-int|LTR|ERVL -83170 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 236.666-6 chr4 27471166 27471361 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 253784 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 299.333-5 chr11 122522941 122523270 + 2 NA Intergenic L2c|LINE|L2 -100234 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 296-18 chr8 101245420 101245657 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -39474 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 356-3 chr1 96648946 96649154 + 2 NA Intergenic MIR|SINE|MIR -72555 NM_001300988 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 621.168 chr4 152385518 152386166 + 2 NA intron (NM_033632, intron 2 of 11) intron (NM_033632, intron 2 of 11) -3313 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 456-3 chr15 41989301 41989725 + 2 NA exon (NM_001206670, exon 15 of 20) exon (NM_001206670, exon 15 of 20) 16750 NR_120334 101928388 Hs.738043 NR_120334 ENSG00000246740 PLA2G4E-AS1 - PLA2G4E antisense RNA 1 ncRNA 791.333-2 chr9 137121075 137121689 + 2 NA Intergenic LTR13_|LTR|ERVK -6649 NM_013379 29952 Hs.37916 NM_013379 ENSG00000176978 DPP7 DPP2|DPPII|QPP dipeptidyl peptidase 7 protein-coding 330.5-12 chr5 3139405 3139701 + 2 NA Intergenic Intergenic -38282 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 358.001 chr1 18912982 18913286 + 2 NA intron (NM_001136265, intron 5 of 8) intron (NM_001136265, intron 5 of 8) -10335 NM_001319218 8659 Hs.77448 NM_003748 ENSG00000159423 ALDH4A1 ALDH4|P5CD|P5CDh aldehyde dehydrogenase 4 family member A1 protein-coding 518.333-2 chr6 81465756 81466293 + 2 NA Intergenic Intergenic 286657 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 327-6 chr12 15629172 15629793 + 2 NA intron (NM_004447, intron 18 of 20) intron (NM_004447, intron 18 of 20) 82871 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 260.667-39 chr4 154805214 154805490 + 2 NA intron (NM_144979, intron 4 of 4) intron (NM_144979, intron 4 of 4) 23847 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 552.333 chr19 10858072 10858490 + 2 NA intron (NM_001136482, intron 3 of 6) intron (NM_001136482, intron 3 of 6) 9866 NM_001136482 255809 Hs.440535 NM_001136482 ENSG00000214212 C19orf38 HIDE1 chromosome 19 open reading frame 38 protein-coding 264-33 chr9 20885360 20885546 + 2 NA intron (NM_017794, intron 23 of 45) intron (NM_017794, intron 23 of 45) 98526 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 617 chr16 8880153 8880675 + 2 NA Intergenic Intergenic -11402 NM_001278260 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 203.667-30 chr3 167685704 167685974 + 2 NA intron (NM_145859, intron 8 of 8) intron (NM_145859, intron 8 of 8) -27916 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 600.333-2 chr16 86340229 86340853 + 2 NA intron (NR_024406, intron 1 of 6) intron (NR_024406, intron 1 of 6) 5138 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 714.166 chr15 57340404 57341041 + 2 NA Intergenic Intergenic 21584 NR_120337 101928611 Hs.569495 NR_120337 LINC01413 - long intergenic non-protein coding RNA 1413 ncRNA 221.5-30 chr8 126809269 126809529 + 2 NA Intergenic Intergenic -203755 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 378-8 chr16 26824258 26824610 + 2 NA Intergenic Intergenic -242493 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 437.667 chr14 63864194 63864500 + 2 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 11343 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 648-2 chr14 22653143 22653637 + 2 NA Intergenic Intergenic -18546 NM_001348233 79549 NM_001348233 ENSG00000255804 OR6J1 OR6J1P|OR6J2 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding 286.667-7 chr12 38902780 38902969 + 2 NA intron (NM_153634, intron 1 of 19) MIRb|SINE|MIR 2717 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 213-17 chr12 113253852 113254032 + 2 NA intron (NM_001351347, intron 1 of 26) intron (NM_001351347, intron 1 of 26) 9574 NM_001351347 53373 Hs.524763 NM_017901 ENSG00000186815 TPCN1 TPC1 two pore segment channel 1 protein-coding 352.167-6 chr2 120257616 120257850 + 2 NA intron (NM_002881, intron 1 of 4) intron (NM_002881, intron 1 of 4) 4881 NM_001369400 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 255.5-17 chr2 64871319 64871537 + 2 NA Intergenic AluJb|SINE|Alu -7797 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 581-3 chr3 76728454 76728938 + 2 NA Intergenic Intergenic -311403 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 271-18 chr2 227234709 227234915 + 2 NA intron (NR_102371, intron 10 of 13) intron (NR_102371, intron 10 of 13) 70247 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 350.667-11 chr20 10499114 10499484 + 2 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 63994 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 502.834-2 chr11 30960202 30960849 + 2 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) 32161 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 510-10 chr8 52736888 52737349 + 2 NA Intergenic Intergenic -22652 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 284-23 chr4 161591458 161591620 + 2 NA intron (NM_001128428, intron 7 of 14) intron (NM_001128428, intron 7 of 14) -431194 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 248-7 chr10 25033623 25033798 + 2 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 17098 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 318.334-7 chr3 65245629 65246062 + 2 NA Intergenic Intergenic -557845 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 531.667-5 chr2 182672509 182673235 + 2 NA Intergenic Intergenic -43385 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 322.333-2 chr11 31641427 31641676 + 2 NA intron (NM_001288725, intron 7 of 10) intron (NM_001288725, intron 7 of 10) 131784 NM_001288726 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 285.5-26 chr5 140460321 140460521 + 2 NA intron (NM_001197030, intron 9 of 9) intron (NM_001197030, intron 9 of 9) 58588 NM_017978 54882 Hs.594084 NM_017747 ENSG00000131503 ANKHD1 MASK|MASK1|PP2500|VBARP ankyrin repeat and KH domain containing 1 protein-coding 689.834-2 chr4 144787272 144788194 + 2 NA Intergenic Intergenic 141577 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 255-31 chr5 109755809 109756040 + 2 NA intron (NM_002372, intron 5 of 21) MLT1K|LTR|ERVL-MaLR 66558 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 345.5-6 chr14 37089943 37090144 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -81983 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 204.334 chr12 63860245 63860427 + 2 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 15636 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 203-24 chr3 99949017 99949189 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 15295 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 476.5 chr15 74438681 74438929 + 2 NA Intergenic Intergenic -4847 NM_003612 8482 Hs.24640 NM_003612 ENSG00000138623 SEMA7A CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL semaphorin 7A (John Milton Hagen blood group) protein-coding 249.333-13 chr16 85390863 85391054 + 2 NA Intergenic Intergenic -84633 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 599.5-2 chr6 117352674 117353182 + 2 NA intron (NM_002944, intron 26 of 42) intron (NM_002944, intron 26 of 42) 72927 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 307.333 chr1 19341470 19341894 + 2 NA intron (NM_001206541, intron 8 of 8) intron (NM_001206541, intron 8 of 8) 29356 NM_001287531 54896 Hs.647620 NM_017765 ENSG00000040487 SLC66A1 LAAT-1|LAAT1|PQLC2 solute carrier family 66 member 1 protein-coding 231.667-16 chr22 34937111 34937227 + 2 NA intron (NR_138042, intron 1 of 4) L1MA6|LINE|L1 60747 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 385.333-4 chr2 126634413 126634890 + 2 NA Intergenic L2b|LINE|L2 -21284 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 464-2 chr20 44380926 44381178 + 2 NA intron (NR_109949, intron 3 of 3) L3|LINE|CR1 14654 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 177-40 chr7 99496902 99497036 + 2 NA intron (NM_001345967, intron 1 of 1) L1ME3Cz|LINE|L1 3312 NM_001345967 84124 Hs.386324 NM_032164 ENSG00000160908 ZNF394 ZKSCAN14|ZSCAN46 zinc finger protein 394 protein-coding 176-32 chr5 67940499 67940625 + 2 NA Intergenic Intergenic 147349 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 409-8 chr8 108953074 108953425 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -133379 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 543-4 chr3 197116807 197117446 + 2 NA intron (NM_001366216, intron 11 of 23) L1MB4|LINE|L1 66746 NR_158766 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 820.5-2 chr3 195859001 195859704 + 2 NA intron (NR_134939, intron 1 of 1) intron (NR_134939, intron 1 of 1) 1052 NR_134939 101929697 Hs.551750 NR_134939 LINC01983 - long intergenic non-protein coding RNA 1983 ncRNA 300-14 chr3 142931172 142931382 + 2 NA intron (NR_038455, intron 1 of 4) intron (NR_038455, intron 1 of 4) 4602 NR_038455 100507389 Hs.38715 NR_038455 ENSG00000243818 LOC100507389 - uncharacterized LOC100507389 ncRNA 350-12 chr3 111116055 111116284 + 2 NA intron (NM_001243288, intron 2 of 8) intron (NM_001243288, intron 2 of 8) 44353 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 441.834-2 chr19 29967032 29967406 + 2 NA intron (NR_045557, intron 1 of 9) intron (NR_045557, intron 1 of 9) 24980 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 487.834-4 chr3 176514154 176514645 + 2 NA promoter-TSS (NR_107017) promoter-TSS (NR_107017) -704 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 354.833-2 chr20 55283356 55283727 + 2 NA Intergenic Intergenic -139502 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 523.166-3 chr4 34405752 34406173 + 2 NA Intergenic Intergenic -136215 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 510.667-3 chr13 113275214 113275651 + 2 NA Intergenic MER4B|LTR|ERV1 12512 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 352.167-10 chr5 171731354 171731576 + 2 NA Intergenic L1ME2|LINE|L1 -54407 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 180-43 chr21 31354672 31354777 + 2 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -10370 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 203.333-7 chr10 26556381 26556505 + 2 NA intron (NM_019043, intron 11 of 14) L3b|LINE|CR1 22864 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 458.666-2 chr5 11312673 11312968 + 2 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 276097 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 509.5-4 chr9 9943449 9944002 + 2 NA intron (NM_002839, intron 4 of 45) L2a|LINE|L2 144333 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 424.833-5 chr8 111426796 111427239 + 2 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 50378 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 407.834-4 chr20 22684172 22684446 + 2 NA intron (NR_146528, intron 2 of 2) intron (NR_146528, intron 2 of 2) 1035 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 257.333-17 chr3 85360133 85360459 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -25414 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 538.167-2 chr2 79526433 79526848 + 2 NA intron (NM_001282598, intron 1 of 17) L1MB7|LINE|L1 3457 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 335.333-2 chr14 56722830 56723080 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 82712 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 546.667 chr2 129493869 129494282 + 2 NA Intergenic L1M4|LINE|L1 -220184 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 249-22 chr3 33146922 33147135 + 2 NA 3' UTR (NM_006371, exon 7 of 7) 3' UTR (NM_006371, exon 7 of 7) 33070 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 269.333-28 chr9 105948480 105948641 + 2 NA Intergenic L1PREC2|LINE|L1 254019 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 396-2 chr14 58228872 58229131 + 2 NA intron (NM_018477, intron 10 of 12) L1MD2|LINE|L1 -15804 NR_038123 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 230.5-2 chr1 192912388 192912633 + 2 NA Intergenic Intergenic 35747 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 228.667-3 chr1 215637733 215637911 + 2 NA intron (NM_206933, intron 69 of 71) intron (NM_206933, intron 69 of 71) 70518 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 249.333-7 chr13 53684325 53684542 + 2 NA Intergenic L1MA3|LINE|L1 -130986 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 364.667-14 chr3 188036708 188037023 + 2 NA Intergenic Intergenic -60458 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 506.833-3 chr6 136792721 136793391 + 2 NA promoter-TSS (NM_005923) promoter-TSS (NM_005923) -579 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 535.667-3 chr17 31064322 31064637 + 2 NA Intergenic L2b|LINE|L2 -5370 NR_146737 646030 NR_146737 LOC646030 - leucine rich repeat containing 37B pseudogene pseudo 414 chr12 55052892 55053260 + 2 NA Intergenic Intergenic 33102 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 216.333-23 chr19 46788630 46788808 + 2 NA promoter-TSS (NM_005628) promoter-TSS (NM_005628) -125 NM_005628 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 355.334 chr11 20527157 20527557 + 2 NA Intergenic Intergenic -72043 NM_004211 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 248-12 chr11 96372744 96372901 + 2 NA intron (NM_024725, intron 6 of 9) intron (NM_024725, intron 6 of 9) 16994 NM_001363594 79780 Hs.525088 NM_014148 ENSG00000149231 CCDC82 HSPC048 coiled-coil domain containing 82 protein-coding 295.333-15 chr22 20868061 20868333 + 2 NA intron (NM_004782, intron 1 of 4) intron (NM_004782, intron 1 of 4) 9190 NM_004782 9342 Hs.108002 NM_004782 ENSG00000099940 SNAP29 CEDNIK|SNAP-29 synaptosome associated protein 29 protein-coding 308-12 chr22 40366912 40367096 + 2 NA TTS (NM_001123378) TTS (NM_001123378) -3590 NR_146415 27352 Hs.474914 NM_015705 ENSG00000100359 SGSM3 CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP small G protein signaling modulator 3 protein-coding 340-17 chr7 39746410 39746583 + 2 NA intron (NR_026999, intron 1 of 11) intron (NR_026999, intron 1 of 11) 12928 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 409.334-5 chr22 37728414 37728644 + 2 NA intron (NM_001039141, intron 7 of 23) intron (NM_001039141, intron 7 of 23) 17415 NR_160697 102724378 NR_160696 LOC102724378 - uncharacterized LOC102724378 ncRNA 302-17 chr4 79313224 79313398 + 2 NA Intergenic MIRc|SINE|MIR 12750 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 555.167-2 chr9 17810993 17811425 + 2 NA Intergenic Intergenic 232143 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 334.333-13 chr6 34278051 34278402 + 2 NA Intergenic Intergenic -29118 NR_155741 221491 Hs.381300 NM_178508 ENSG00000186577 SMIM29 C6orf1|LBH small integral membrane protein 29 protein-coding 502.5-7 chr7 92765342 92765687 + 2 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 68445 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 520 chr14 78902234 78902663 + 2 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -297534 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 182-13 chr16 7996798 7996956 + 2 NA Intergenic MamRep1527|LTR|LTR 592961 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 277-23 chr5 74448230 74448424 + 2 NA intron (NR_126354, intron 2 of 2) MIRb|SINE|MIR 88649 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 247.834-6 chr7 35037403 35037646 + 2 NA promoter-TSS (NM_001366673) promoter-TSS (NM_001366673) -39 NM_001366673 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 266.667-26 chr9 20884172 20884370 + 2 NA intron (NM_017794, intron 22 of 45) intron (NM_017794, intron 22 of 45) 97344 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 389.5 chr11 102603156 102603584 + 2 NA intron (NM_004771, intron 6 of 9) intron (NM_004771, intron 6 of 9) 21962 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 398.833 chr11 10885896 10886401 + 2 NA Intergenic Intergenic 27931 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 583.166 chr14 85536377 85536985 + 2 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 3332 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 331.5-9 chr8 79585030 79585331 + 2 NA Intergenic Intergenic -25937 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 298.167 chr1 117293302 117293503 + 2 NA Intergenic Intergenic -2064 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 221-11 chr14 63865908 63866047 + 2 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 12973 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 496.5-3 chr2 155373156 155373604 + 2 NA Intergenic Intergenic 674685 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 227.5-2 chr1 24844818 24844957 + 2 NA TTS (NM_013943) TTS (NM_013943) 74529 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 634.333-3 chr4 135418358 135418822 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -295031 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 310.667-16 chr5 8030922 8031209 + 2 NA Intergenic L1MDa|LINE|L1 161917 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 275.5-7 chr10 75541899 75542242 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -10388 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 210.5-10 chr12 65729715 65729940 + 2 NA Intergenic Intergenic -87455 NR_120434 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 407.167-4 chr11 98811180 98811563 + 2 NA Intergenic LTR16B|LTR|ERVL -209578 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 309.833 chr10 58917080 58917316 + 2 NA Intergenic Intergenic -82320 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 276.667-12 chr17 70741724 70742288 + 2 NA Intergenic Intergenic 460173 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 444-7 chr5 51656671 51657078 + 2 NA Intergenic Intergenic 273426 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 270.333-8 chr2 19954246 19954462 + 2 NA intron (NM_001006657, intron 12 of 27) L1M4|LINE|L1 35751 NM_020779 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 366.001 chr8 72505570 72505817 + 2 NA Intergenic L1MD3|LINE|L1 -31532 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 457.834 chr14 20332956 20333407 + 2 NA promoter-TSS (NM_021178) promoter-TSS (NM_021178) 98 NM_021178 57820 Hs.107003 NM_021178 ENSG00000100814 CCNB1IP1 C14orf18|HEI10 cyclin B1 interacting protein 1 protein-coding 411.333-2 chr1 186687245 186687578 + 2 NA Intergenic L1MC1|LINE|L1 6757 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 271.333-14 chr19 42113628 42113849 + 2 NA intron (NM_001207026, intron 5 of 12) L2b|LINE|L2 18708 NM_002698 5452 Hs.147381 NM_002698 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 490.5 chr14 75176658 75176991 + 2 NA promoter-TSS (NM_006827) promoter-TSS (NM_006827) -212 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 348.5-9 chr11 81651581 81651794 + 2 NA Intergenic L1M5|LINE|L1 239149 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 401.667-5 chr17 17355775 17356273 + 2 NA Intergenic Intergenic 52651 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 221.333-12 chr2 126203367 126203568 + 2 NA Intergenic L1MD2|LINE|L1 -85482 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 460.667-6 chr18 77954098 77954530 + 2 NA Intergenic Intergenic 39413 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 497.833-2 chr14 58133647 58134216 + 2 NA intron (NM_001320173, intron 2 of 4) MIR|SINE|MIR 18282 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 380.5-9 chr3 13452721 13453014 + 2 NA Intergenic L1ME2|LINE|L1 27186 NR_046690 100874101 Hs.535701 NR_046690 ENSG00000244502 HDAC11-AS1 - HDAC11 antisense RNA 1 ncRNA 935.666 chr12 10235462 10236238 + 2 NA Intergenic Intergenic -3111 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 266.833-2 chr11 83942304 83942585 + 2 NA intron (NM_001142699, intron 14 of 27) intron (NM_001142699, intron 14 of 27) -260019 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 182 chr1 191636199 191636315 + 2 NA Intergenic L1ME2|LINE|L1 -407759 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 405.667-3 chr12 90141933 90142180 + 2 NA Intergenic L1MEb|LINE|L1 -151262 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 235.5-21 chr7 105735158 105735363 + 2 NA intron (NM_020725, intron 3 of 11) intron (NM_020725, intron 3 of 11) -56098 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 337.667-7 chr17 32139023 32139323 + 2 NA Intergenic Intergenic -3281 NM_001033568 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding 279.5-11 chr20 20820278 20820664 + 2 NA Intergenic LTR16E2|LTR|ERVL -107827 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 489.834-2 chr1 98467937 98468534 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -193486 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 349-5 chr10 43780672 43780896 + 2 NA Intergenic L1ME4a|LINE|L1 -1882 NR_134483 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 354-15 chr6 116167724 116167944 + 2 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) -41702 NM_000493 1300 Hs.520339 NM_000493 ENSG00000123500 COL10A1 - collagen type X alpha 1 chain protein-coding 442.833-2 chr12 65720242 65720548 + 2 NA Intergenic AluJb|SINE|Alu -78023 NR_120434 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 254.833-7 chr14 57889675 57889830 + 2 NA Intergenic Intergenic -23660 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 440-3 chr11 13642706 13643069 + 2 NA Intergenic L1MD3|LINE|L1 -25781 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 380.999-3 chr6 83055610 83055982 + 2 NA intron (NR_146807, intron 2 of 10) intron (NR_146807, intron 2 of 10) 10045 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 326.5-5 chr14 46960296 46960901 + 2 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) -308817 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 190.5-32 chr3 189147004 189147157 + 2 NA Intergenic MIRb|SINE|MIR -24891 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 437.833 chr10 84138882 84139653 + 2 NA promoter-TSS (NM_014394) promoter-TSS (NM_014394) -242 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 270.5-5 chr1 213642509 213642832 + 2 NA Intergenic L1M5|LINE|L1 -282079 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 272.834-7 chr4 55447464 55447662 + 2 NA intron (NM_004898, intron 18 of 22) intron (NM_004898, intron 18 of 22) 51606 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 629.834 chrX 50903637 50904194 + 2 NA Intergenic Intergenic -6820 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 399.334-3 chr20 51700669 51700889 + 2 NA intron (NM_006045, intron 4 of 27) AluSp|SINE|Alu 67611 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 402-13 chr9 24251226 24251589 + 2 NA Intergenic L1M4|LINE|L1 294269 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 364-14 chr9 86239254 86239619 + 2 NA intron (NM_001276367, intron 1 of 4) intron (NM_001276367, intron 1 of 4) 16597 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 205.333-22 chr2 200481533 200481716 + 2 NA 3' UTR (NM_001282735, exon 13 of 13) 3' UTR (NM_001282735, exon 13 of 13) 28444 NM_001321548 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 188.666-5 chr7 118777482 118777635 + 2 NA Intergenic Intergenic 552854 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 358.334-3 chr20 33592731 33592970 + 2 NA intron (NM_005093, intron 2 of 11) intron (NM_005093, intron 2 of 11) 30485 NM_005093 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 191.5-25 chr2 108855363 108855662 + 2 NA intron (NM_001351549, intron 12 of 13) intron (NM_001351549, intron 12 of 13) 68741 NR_147236 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 515.5-3 chr2 175366554 175366955 + 2 NA Intergenic Intergenic -185044 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 377.167-5 chr4 83771057 83771393 + 2 NA Intergenic Intergenic 235117 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 347-22 chr6 165495610 165495913 + 2 NA intron (NM_006661, intron 3 of 22) intron (NM_006661, intron 3 of 22) 166339 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 395.333-11 chr9 35110569 35111023 + 2 NA intron (NM_025182, intron 1 of 8) intron (NM_025182, intron 1 of 8) 656 NM_001317991 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 253.167-10 chr17 76758891 76759054 + 2 NA intron (NR_148240, intron 9 of 13) AluJo|SINE|Alu 21471 NR_148232 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 288.833-6 chr17 49677533 49678068 + 2 NA intron (NM_001007226, intron 1 of 11) CpG 297 NM_001007228 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 184-46 chr7 32409597 32409756 + 2 NA intron (NM_001322059, intron 1 of 17) L1M5|LINE|L1 18548 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 368.167-8 chr5 175701287 175701615 + 2 NA intron (NR_160284, intron 3 of 3) MLT1K|LTR|ERVL-MaLR 43380 NM_001131055 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 406 chr10 99781105 99781382 + 2 NA Intergenic L1M3|LINE|L1 -1397 NM_000392 1244 Hs.368243 NM_000392 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP binding cassette subfamily C member 2 protein-coding 172-31 chr3 33148248 33148443 + 2 NA TTS (NM_006371) TTS (NM_006371) 34387 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 318-5 chr12 9675649 9675952 + 2 NA intron (NM_001197319, intron 1 of 2) L1MC1|LINE|L1 6087 NM_001197317 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 178.333-10 chr12 53938545 53938748 + 2 NA promoter-TSS (NM_017410) promoter-TSS (NM_017410) -185 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 344-13 chr20 25137952 25138143 + 2 NA Intergenic L1M5|LINE|L1 9946 NR_027093 284798 Hs.334934 NR_027091 ENSG00000230725 LOC284798 - uncharacterized LOC284798 ncRNA 517.667 chr1 198358601 198358929 + 2 NA Intergenic Intergenic 182180 NM_133262 127124 Hs.127743 NM_133262 ENSG00000151418 ATP6V1G3 ATP6G3|Vma10 ATPase H+ transporting V1 subunit G3 protein-coding 342.667-7 chr2 135430458 135430692 + 2 NA intron (NM_001286569, intron 2 of 21) L3|LINE|CR1 100010 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 211.5-24 chr18 11078537 11078678 + 2 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 70155 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 320.333-2 chr21 31678806 31679214 + 2 NA intron (NM_020706, intron 19 of 19) intron (NM_020706, intron 19 of 19) 19388 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 319-3 chr15 96354807 96355315 + 2 NA Intergenic Intergenic 21296 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 290-3 chr10 117894918 117895144 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -151790 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 320.5-15 chr7 88224618 88224906 + 2 NA intron (NM_198901, intron 1 of 7) intron (NM_198901, intron 1 of 7) 2231 NM_001256892 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 237-36 chr6 106449133 106449523 + 2 NA intron (NM_001371242, intron 1 of 21) intron (NM_001371242, intron 1 of 21) 7920 NR_134603 105377924 Hs.741855 NR_134603 ENSG00000282408 LOC105377924 - uncharacterized LOC105377924 ncRNA 313.333-10 chr18 22983350 22983658 + 2 NA intron (NM_002894, intron 7 of 18) intron (NM_002894, intron 7 of 18) 49628 NM_203291 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 341.5-10 chr18 39317144 39317315 + 2 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 304946 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 224.333-4 chr1 183198547 183198911 + 2 NA intron (NM_005562, intron 1 of 22) intron (NM_005562, intron 1 of 22) 12465 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 297-6 chr14 61677503 61677691 + 2 NA Intergenic Intergenic -17916 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 190.667-46 chr5 114450669 114450883 + 2 NA intron (NR_130785, intron 11 of 12) MER20B|DNA|hAT-Charlie 17265 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 188.5-21 chr2 126501663 126501880 + 2 NA Intergenic L1M4|LINE|L1 -154164 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 262-16 chr3 134156153 134156494 + 2 NA TTS (NM_002958) TTS (NM_002958) 94421 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 479-7 chr2 214960548 214961263 + 2 NA intron (NR_103740, intron 41 of 54) intron (NR_103740, intron 41 of 54) 71181 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 327.833-10 chr4 161529294 161529646 + 2 NA intron (NM_020116, intron 10 of 15) intron (NM_020116, intron 10 of 15) -493263 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 181.5-9 chr11 43852199 43852305 + 2 NA intron (NM_016142, intron 9 of 10) intron (NM_016142, intron 9 of 10) -28579 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 976.666 chr10 88582639 88583617 + 2 NA exon (NM_001031709, exon 1 of 7) exon (NM_001031709, exon 1 of 7) 190 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 272-3 chr1 158036153 158036369 + 2 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 10711 NR_145471 100505785 Hs.664656 NR_145471 KIRREL1-IT1 KIRREL-IT1 KIRREL1 intronic transcript 1 ncRNA 443.5-5 chr16 63289778 63290019 + 2 NA Intergenic Intergenic -1253460 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 569-3 chr3 88055753 88056245 + 2 NA 5' UTR (NM_003663, exon 3 of 3) 5' UTR (NM_003663, exon 3 of 3) 2997 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 386.167-6 chr7 104944919 104945324 + 2 NA Intergenic Intergenic -18476 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 209.333-37 chr6 107308302 107308443 + 2 NA intron (NM_020381, intron 2 of 7) L2c|LINE|L2 151192 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 366-10 chr4 99407385 99407574 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 27655 NM_001166504 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 341.333-8 chr2 167450292 167450576 + 2 NA Intergenic L1PBa1|LINE|L1 263062 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 529.834 chr22 43011082 43011446 + 2 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) 3885 NM_001184970 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 351.999 chr2 78829246 78829538 + 2 NA Intergenic Intergenic -196310 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 344-17 chr7 109227839 109228109 + 2 NA Intergenic Intergenic -343387 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 486.001 chr1 98955671 98956003 + 2 NA intron (NM_001037317, intron 2 of 5) intron (NM_001037317, intron 2 of 5) -48439 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 355.5-6 chr8 144826925 144827382 + 2 NA promoter-TSS (NM_001349806) promoter-TSS (NM_001349806) -113 NR_147501 100130027 Hs.639618 NR_147501 LOC100130027 - uncharacterized LOC100130027 ncRNA 428-7 chr2 119606724 119607147 + 2 NA intron (NR_073132, intron 12 of 24) L1MC4|LINE|L1 62486 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 318.666-5 chr5 124236633 124236908 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 201750 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 381.334-4 chr5 158660789 158661106 + 2 NA Intergenic AluJr|SINE|Alu -251174 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 247.333-25 chr8 63259147 63259396 + 2 NA Intergenic Intergenic 90268 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 228.666-15 chr8 128391870 128392072 + 2 NA Intergenic L1MA8|LINE|L1 172708 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 403.167-3 chr2 143686704 143687303 + 2 NA intron (NM_018460, intron 12 of 13) intron (NM_018460, intron 12 of 13) -250064 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 1009.67 chr1 65430851 65431723 + 2 NA intron (NM_017526, intron 3 of 3) intron (NM_017526, intron 3 of 3) 10571 NM_001198681 54741 Hs.23581 NM_017526 ENSG00000213625 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 255.833-10 chr17 7862448 7862847 + 2 NA TTS (NM_144607) TTS (NM_144607) 4644 NM_001330110 124637 Hs.27475 NM_144607 ENSG00000182224 CYB5D1 - cytochrome b5 domain containing 1 protein-coding 167.333-26 chr18 13812132 13812426 + 2 NA Intergenic Intergenic -11870 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 493.333 chr1 241485426 241486142 + 2 NA Intergenic LTR55|LTR|ERVL? 34001 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 242.833-7 chr14 42836273 42836447 + 2 NA Intergenic Intergenic 1229504 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 389.833 chr10 49538819 49539149 + 2 NA 5' UTR (NM_000124, exon 1 of 21) 5' UTR (NM_000124, exon 1 of 21) 137 NM_000124 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 685 chr10 23994199 23994720 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) -214332 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 645.667-3 chr9 83219370 83219967 + 2 NA Intergenic Intergenic 47600 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 615-3 chr18 80262056 80262631 + 2 NA Intergenic TAR1|Satellite|telo -14829 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 238-32 chr6 37222665 37222857 + 2 NA intron (NM_145316, intron 1 of 3) MER52C|LTR|ERV1 34838 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 290.667-25 chr9 35494840 35495048 + 2 NA intron (NM_001330740, intron 1 of 10) (TA)n|Simple_repeat|Simple_repeat 4833 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 266-15 chr2 82906114 82906320 + 2 NA Intergenic Intergenic 49414 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 298.5-7 chr14 64757840 64758263 + 2 NA intron (NM_001024858, intron 31 of 34) intron (NM_001024858, intron 31 of 34) 27635 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 446-3 chr14 47692577 47692947 + 2 NA Intergenic Intergenic -17808 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 310-11 chr15 34780356 34780574 + 2 NA intron (NR_120329, intron 2 of 2) L1PA16|LINE|L1 15084 NM_005159 70 Hs.118127 NM_005159 ENSG00000159251 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin alpha cardiac muscle 1 protein-coding 633.833 chr11 75022826 75023513 + 2 NA Intergenic Intergenic 34236 NM_001367866 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 182-19 chr2 11888774 11888906 + 2 NA Intergenic Intergenic -51854 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 192.833-29 chr5 148086899 148087015 + 2 NA intron (NM_006846, intron 5 of 32) intron (NM_006846, intron 5 of 32) 22977 NM_001127699 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 558.001-2 chr22 30591869 30592312 + 2 NA promoter-TSS (NM_014303) promoter-TSS (NM_014303) -180 NM_001243225 23481 Hs.517543 NM_014303 ENSG00000100029 PES1 NOP7|PES pescadillo ribosomal biogenesis factor 1 protein-coding 458-9 chr8 3790234 3790753 + 2 NA intron (NM_033225, intron 5 of 69) (TGATGG)n|Simple_repeat|Simple_repeat -1062042 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 297.834-7 chr7 22299286 22299469 + 2 NA intron (NM_012294, intron 5 of 25) intron (NM_012294, intron 5 of 25) 57777 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 378.667-4 chr12 88638065 88638460 + 2 NA Intergenic Intergenic -57789 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 352.333 chr10 51879243 51879669 + 2 NA intron (NM_001098512, intron 4 of 17) L2c|LINE|L2 -179861 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 517.167-2 chr1 223684174 223684810 + 2 NA Intergenic L1MC5a|LINE|L1 -17101 NM_001146068 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 611.499 chr3 94303621 94304212 + 2 NA Intergenic Intergenic 240855 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 541.834 chr17 29508468 29508898 + 2 NA intron (NM_025142, intron 14 of 17) intron (NM_025142, intron 14 of 17) 58354 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding 258.834-2 chr12 5507545 5507726 + 2 NA Intergenic Intergenic 13503 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 441.834 chr15 67202666 67202968 + 2 NA 3' UTR (NM_024666, exon 10 of 10) 3' UTR (NM_024666, exon 10 of 10) 36662 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 261-22 chr7 84349021 84349319 + 2 NA Intergenic Intergenic -154381 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 308.666-8 chr6 53773529 53773722 + 2 NA Intergenic Intergenic -21380 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 261.5-32 chr5 83928080 83928299 + 2 NA Intergenic Intergenic -207334 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 249-17 chr2 50171062 50171191 + 2 NA intron (NM_001330093, intron 18 of 22) Tigger2a|DNA|TcMar-Tigger 176628 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 374.666-2 chr6 47263758 47264065 + 2 NA intron (NM_014452, intron 3 of 5) intron (NM_014452, intron 3 of 5) 45994 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 821.833-2 chr12 126874315 126874996 + 2 NA promoter-TSS (NR_033970) promoter-TSS (NR_033970) 35 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 316.5-12 chr18 10738817 10739124 + 2 NA intron (NM_022068, intron 31 of 51) intron (NM_022068, intron 31 of 51) 20679 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 516-4 chr16 73878817 73879238 + 2 NA Intergenic Intergenic 336494 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 263.667-13 chr20 9974151 9974558 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -11979 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 587.667-3 chr17 17001603 17002201 + 2 NA Intergenic Intergenic 13573 NR_146886 105371562 Hs.579259 NR_146886 ENSG00000230969 LINC02090 - long intergenic non-protein coding RNA 2090 ncRNA 657 chr16 88562030 88562786 + 2 NA promoter-TSS (NR_146877) promoter-TSS (NR_146877) -425 NR_146877 400555 Hs.120392 NM_001001682 ZC3H18-AS1 C16orf85|LINC00859 ZC3H18 antisense RNA 1 (head to head) ncRNA 371.833-2 chr10 89709321 89709548 + 2 NA exon (NM_001284259, exon 4 of 33) exon (NM_001284259, exon 4 of 33) 7844 NM_016195 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 440-9 chr3 158845603 158845910 + 2 NA Intergenic Intergenic 43702 NM_022736 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 484.334-2 chr4 20249063 20249802 + 2 NA Intergenic Intergenic -2473 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 487.667-2 chr2 73456576 73457049 + 2 NA promoter-TSS (NR_046762) promoter-TSS (NR_046762) -291 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 315-13 chr3 116286922 116287164 + 2 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -72981 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 394.001-3 chr13 55240647 55241024 + 2 NA Intergenic Intergenic 66381 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 229-10 chr2 69861699 69861945 + 2 NA intron (NM_178439, intron 10 of 13) AluSz|SINE|Alu -32134 NR_037862 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 250.666-5 chr20 32030374 32030541 + 2 NA intron (NM_080625, intron 8 of 8) MIRb|SINE|MIR 20019 NM_080625 140706 Hs.382151 NM_080625 ENSG00000101331 CCM2L C20orf160|dJ310O13.5 CCM2 like scaffold protein protein-coding 662.166-2 chr8 126869647 126870275 + 2 NA Intergenic MIRb|SINE|MIR -143193 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 523 chr1 215216346 215216886 + 2 NA intron (NM_001017424, intron 6 of 6) MER33|DNA|hAT-Charlie 133879 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 282 chr1 165801105 165801353 + 2 NA Intergenic L1PA7|LINE|L1 -26385 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 314-15 chr3 70984323 70984647 + 2 NA intron (NR_146142, intron 13 of 19) L2b|LINE|L2 80439 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 676.167 chr10 93006204 93006952 + 2 NA intron (NM_001319195, intron 19 of 21) intron (NM_001319195, intron 19 of 21) -54220 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 325.5-13 chr21 28991633 28991972 + 2 NA intron (NM_015565, intron 1 of 29) intron (NM_015565, intron 1 of 29) 1075 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 802.667 chr3 119891766 119892375 + 2 NA intron (NM_002093, intron 7 of 11) intron (NM_002093, intron 7 of 11) 109360 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 403.333-5 chr8 132009247 132009553 + 2 NA intron (NR_136616, intron 23 of 23) intron (NR_136616, intron 23 of 23) 49982 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 347.667-2 chr1 230590290 230590488 + 2 NA Intergenic Intergenic 5194 NR_146479 101927553 Hs.680219 NR_146479 ENSG00000232964 LINC01737 - long intergenic non-protein coding RNA 1737 ncRNA 402-9 chr4 139485992 139486390 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 32070 NM_031296 83452 Hs.591679 NM_031296 ENSG00000172007 RAB33B SMC2 RAB33B, member RAS oncogene family protein-coding 341.667-14 chr7 49674433 49674637 + 2 NA Intergenic Intergenic -99103 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 402.667-7 chr14 34301572 34301785 + 2 NA Intergenic Intergenic 160562 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 451.833-2 chr5 120793992 120794339 + 2 NA Intergenic Intergenic 262701 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 314.167-9 chr18 24488816 24489215 + 2 NA Intergenic Intergenic 28378 NM_021624 59340 Hs.287388 NM_021624 ENSG00000134489 HRH4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 353.333 chr1 42918222 42918550 + 2 NA Intergenic L1MCa|LINE|L1 40482 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 312.5-11 chr20 52426996 52427205 + 2 NA Intergenic Intergenic -193738 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 204.667-2 chr1 56180222 56180386 + 2 NA Intergenic Intergenic -234659 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 493.501 chr14 67283034 67283658 + 2 NA intron (NM_001256550, intron 3 of 14) intron (NM_001256550, intron 3 of 14) 41911 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 254.333-13 chr14 71559612 71559848 + 2 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -26568 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 348.334-9 chr4 158671733 158672297 + 2 NA promoter-TSS (NM_004453) promoter-TSS (NM_004453) 41 NR_077235 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 296.167 chr1 95908623 95908827 + 2 NA Intergenic L1MA5A|LINE|L1 -83343 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 787-3 chr20 10552959 10553760 + 2 NA intron (NM_001009608, intron 2 of 7) Charlie4a|DNA|hAT-Charlie 96336 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 345.333-9 chr7 146365533 146365905 + 2 NA Intergenic Intergenic -408552 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 544.833 chr12 26937974 26938402 + 2 NA promoter-TSS (NM_001171887) promoter-TSS (NM_001171887) -184 NM_001171888 26127 Hs.591162 NM_015633 ENSG00000111790 FGFR1OP2 HSPC123-like|WIT3.0 FGFR1 oncogene partner 2 protein-coding 491-9 chr5 44534240 44534548 + 2 NA Intergenic Intergenic -24112 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 255.167-14 chr15 71747202 71747374 + 2 NA intron (NM_001286429, intron 7 of 11) intron (NM_001286429, intron 7 of 11) -55749 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 380-10 chr2 114660593 114660844 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 172830 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 750.5 chr5 10701253 10702035 + 2 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 59590 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 354.667-11 chr4 36792042 36792295 + 2 NA Intergenic L1PA13|LINE|L1 -150268 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 594.5-4 chr3 58630095 58630526 + 2 NA intron (NR_134853, intron 2 of 3) intron (NR_134853, intron 2 of 3) -2700 NM_001282714 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 395.833-2 chr8 22695130 22695544 + 2 NA Intergenic CpG-27074 -1857 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 253.667-12 chr14 61894601 61894843 + 2 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -32973 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 358-2 chr1 156339681 156339997 + 2 NA intron (NR_130913, intron 2 of 2) intron (NR_130913, intron 2 of 2) 937 NM_001304820 128229 Hs.534539 NM_144627 ENSG00000163467 TSACC C1orf182|SIP|SSTK-IP TSSK6 activating cochaperone protein-coding 398-5 chr13 26873120 26873386 + 2 NA Intergenic Intergenic -112467 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 227.333-30 chr5 180136846 180137192 + 2 NA intron (NM_175062, intron 3 of 13) MLT1K|LTR|ERVL-MaLR -65260 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 719-3 chr22 37608177 37608774 + 2 NA promoter-TSS (NM_001363771) promoter-TSS (NM_001363771) 1 NM_001001560 26088 Hs.499158 NM_013365 ENSG00000100083 GGA1 - golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 275-26 chr6 27895928 27896136 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 2607 NM_003527 8348 Hs.484991 NM_003527 ENSG00000274641 HIST1H2BO H2B.2|H2B/n|H2BFN|dJ193B12.2 histone cluster 1 H2B family member o protein-coding 240-32 chr21 15471942 15472112 + 2 NA Intergenic Intergenic -257907 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 600-5 chr3 114737850 114738193 + 2 NA intron (NM_001348801, intron 4 of 11) intron (NM_001348801, intron 4 of 11) 5504 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 334.667 chr1 210003781 210003973 + 2 NA intron (NM_001146261, intron 3 of 9) intron (NM_001146261, intron 3 of 9) 65660 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 250-25 chr3 196073207 196073881 + 2 NA intron (NM_001313966, intron 2 of 16) intron (NM_001313966, intron 2 of 16) 8546 NM_001313965 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 209.334-6 chr5 157390661 157390796 + 2 NA intron (NM_001037333, intron 30 of 30) intron (NM_001037333, intron 30 of 30) -45051 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 370.834-4 chr16 65636077 65636375 + 2 NA Intergenic Intergenic -59926 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 290.333-5 chr10 13552963 13553113 + 2 NA Intergenic L1M4a1|LINE|L1 -24024 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 501.5 chr15 48285916 48286327 + 2 NA intron (NM_001184832, intron 21 of 26) intron (NM_001184832, intron 21 of 26) -44974 NM_001330286 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 350.334-7 chr18 53184273 53184591 + 2 NA intron (NM_005215, intron 9 of 28) Tigger3a|DNA|TcMar-Tigger -52669 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 528.834-3 chr6 127464549 127465023 + 2 NA intron (NM_001012279, intron 7 of 11) intron (NM_001012279, intron 7 of 11) -5397 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 362.5-11 chr5 110176726 110177071 + 2 NA Intergenic Intergenic 293716 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 262.5-20 chr4 60138598 60138849 + 2 NA Intergenic L1MEc|LINE|L1 -783896 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 517.667-3 chr22 46798546 46799027 + 2 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 24859 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 501-5 chr6 54224107 54224397 + 2 NA intron (NM_138569, intron 10 of 12) L1M4|LINE|L1 -84189 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 295.334-8 chr3 22960584 22960772 + 2 NA Intergenic Intergenic 241900 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 243.333-26 chr21 30104156 30104314 + 2 NA Intergenic Intergenic 62570 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 224-42 chr5 127875504 127875802 + 2 NA exon (NM_001317938, exon 6 of 7) exon (NM_001317938, exon 6 of 7) 172264 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 186.667-69 chrX 68490597 68490876 + 2 NA Intergenic LTR16E2|LTR|ERVL -8046 NM_001195214 286451 Hs.82719 NM_173834 ENSG00000181704 YIPF6 FinGER6 Yip1 domain family member 6 protein-coding 268-23 chr2 104448108 104448472 + 2 NA intron (NR_015399, intron 1 of 3) intron (NR_015399, intron 1 of 3) 13943 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 174.334-7 chr3 33636893 33637078 + 2 NA intron (NM_015097, intron 8 of 38) intron (NM_015097, intron 8 of 38) 22694 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 323.667-6 chr1 222435342 222435558 + 2 NA Intergenic MLT2C1|LTR|ERVL 112654 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 323-14 chr2 129332795 129332980 + 2 NA Intergenic L1M5|LINE|L1 -58996 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 267.333-8 chr14 52658669 52658832 + 2 NA intron (NM_014584, intron 9 of 15) intron (NM_014584, intron 9 of 15) 36808 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 433.333-4 chr18 53784306 53784594 + 2 NA Intergenic Intergenic -203391 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 812.334 chr1 151972285 151973171 + 2 NA Intergenic L2b|LINE|L2 21131 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 741.001 chr3 10703867 10704538 + 2 NA Intergenic MER74A|LTR|ERVL 60007 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 361.667-9 chr2 27356561 27356827 + 2 NA promoter-TSS (NM_001318909) promoter-TSS (NM_001318909) -202 NM_001318909 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 344-4 chr1 158087122 158087550 + 2 NA intron (NM_018240, intron 5 of 14) MIRb|SINE|MIR 53304 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 378-4 chr10 92644409 92644765 + 2 NA intron (NM_004523, intron 17 of 21) AluSx1|SINE|Alu -45368 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 368.5-14 chr7 104983509 104983799 + 2 NA non-coding (NR_039981, exon 1 of 1) non-coding (NR_039981, exon 1 of 1) 7511 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 542.501 chr13 31741250 31741615 + 2 NA intron (NM_130806, intron 1 of 17) intron (NM_130806, intron 1 of 17) 1890 NM_001166058 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 398.833-11 chr6 84428167 84428463 + 2 NA intron (NR_132100, intron 4 of 4) intron (NR_132100, intron 4 of 4) 46614 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 326.666-3 chr13 26528282 26528645 + 2 NA Intergenic Intergenic -29220 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 432-8 chr7 48998971 48999225 + 2 NA Intergenic MER21B|LTR|ERVL 74551 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 534.334 chr2 102703598 102704192 + 2 NA intron (NM_003048, intron 9 of 11) intron (NM_003048, intron 9 of 11) 32993 NR_136173 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 203.5-25 chr20 21849693 21849853 + 2 NA Intergenic L2a|LINE|L2 144109 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 473-3 chr2 231710956 231711287 + 2 NA intron (NM_001099285, intron 1 of 4) CpG-17106 -2193 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 448.167-2 chr13 111379210 111379534 + 2 NA Intergenic L1MD3|LINE|L1 58730 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 413-4 chr13 105053359 105053646 + 2 NA Intergenic Intergenic -412365 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 276.5-7 chr18 64772470 64772704 + 2 NA Intergenic Intergenic -512532 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 220.5-2 chr1 64647227 64647388 + 2 NA intron (NM_020925, intron 8 of 26) intron (NM_020925, intron 8 of 26) 67460 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 336.667-12 chr6 139250499 139250679 + 2 NA intron (NM_153235, intron 7 of 9) intron (NM_153235, intron 7 of 9) 41409 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 343-8 chr3 89215484 89216050 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 108146 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 387-7 chr18 25029943 25030215 + 2 NA Intergenic L1PB4|LINE|L1 -42100 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 295.667-10 chr19 27734713 27734964 + 2 NA Intergenic HSAT4|Satellite|centr -58593 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 465.833-4 chrX 52261567 52261917 + 2 NA Intergenic Intergenic 71120 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 466-2 chr2 14690484 14690889 + 2 NA Intergenic Intergenic 57969 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 207.833-29 chr7 98733213 98733551 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 116097 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 370.667-6 chr3 125032130 125032365 + 2 NA intron (NM_020733, intron 1 of 16) intron (NM_020733, intron 1 of 16) 23750 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 272-13 chr14 31206085 31206307 + 2 NA intron (NM_015382, intron 1 of 42) intron (NM_015382, intron 1 of 42) 1597 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 258.5-2 chr10 48385335 48385548 + 2 NA intron (NM_001323302, intron 3 of 13) intron (NM_001323302, intron 3 of 13) -16171 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 249-2 chr10 61458622 61458801 + 2 NA intron (NR_120643, intron 1 of 5) HAL1ME|LINE|L1 -5330 NR_134507 219623 Hs.623955 NM_178505 ENSG00000196932 TMEM26 - transmembrane protein 26 protein-coding 729.501-2 chr2 81454485 81455162 + 2 NA Intergenic MIRc|SINE|MIR 12123 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 215.333-49 chr9 136572123 136572288 + 2 NA Intergenic Intergenic 24363 NR_121577 101928483 Hs.170035 NR_121577 NALT1 LINC01573|MIR4674HG|NALT|TCONS_l2_00029132 NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1 ncRNA 350-13 chr4 31029036 31029352 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -141950 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 361.667-2 chr10 87768609 87768957 + 2 NA intron (NM_001321968, intron 6 of 8) intron (NM_001321968, intron 6 of 8) 49448 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 377.167-3 chr11 75144390 75144842 + 2 NA Intergenic Intergenic -6491 NM_001145212 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 342.333-7 chr6 37485339 37485609 + 2 NA intron (NM_138493, intron 1 of 3) intron (NM_138493, intron 1 of 3) 14419 NM_138493 154467 Hs.284207 NM_138493 ENSG00000198937 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 453.834 chr14 25405073 25406008 + 2 NA Intergenic L1PB3|LINE|L1 -355243 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 419.333-5 chr5 17951584 17952021 + 2 NA Intergenic L1PB1|LINE|L1 144528 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 282.5-20 chr9 32358087 32358250 + 2 NA Intergenic L1ME1|LINE|L1 -26435 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 383.833-2 chr13 26698721 26699197 + 2 NA Intergenic Intergenic 61827 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 254.5-5 chr12 13978450 13978627 + 2 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 1818 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 362-3 chr1 184513135 184513416 + 2 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 126246 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 735.834-2 chr7 134141204 134142020 + 2 NA intron (NM_001365700, intron 3 of 15) intron (NM_001365700, intron 3 of 15) 14272 NM_001365701 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 249.833-16 chr5 16455940 16456125 + 2 NA intron (NM_033414, intron 4 of 5) intron (NM_033414, intron 4 of 5) 9768 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 277.333-23 chr20 57331586 57331771 + 2 NA intron (NM_198265, intron 1 of 11) intron (NM_198265, intron 1 of 11) 1875 NM_012444 23626 Hs.159737 NM_012444 ENSG00000054796 SPO11 CT35|SPATA43|TOPVIA SPO11 initiator of meiotic double stranded breaks protein-coding 275.167-19 chr4 54704999 54705178 + 2 NA intron (NM_000222, intron 5 of 20) intron (NM_000222, intron 5 of 20) 47160 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 368.5-9 chr4 52596183 52596403 + 2 NA 3' UTR (NM_022832, exon 9 of 9) 3' UTR (NM_022832, exon 9 of 9) 60246 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 323.5-16 chr6 90480747 90481066 + 2 NA Intergenic Intergenic 106166 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 500.167-2 chr7 52829696 52830221 + 2 NA Intergenic HAL1|LINE|L1 -205675 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 176 chr1 3724554 3724648 + 2 NA intron (NM_001204185, intron 6 of 12) intron (NM_001204185, intron 6 of 12) 22170 NR_033712 57212 Hs.49658 NM_207306 ENSG00000227372 TP73-AS1 KIAA0495|PDAM TP73 antisense RNA 1 ncRNA 196.5-21 chr2 180656651 180656800 + 2 NA Intergenic Intergenic -35379 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 230-43 chr9 24833092 24833262 + 2 NA Intergenic Intergenic -287280 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 454-2 chr14 22608676 22609033 + 2 NA intron (NM_022060, intron 5 of 6) AluSx|SINE|Alu 10616 NM_022060 63874 Hs.445665 NM_022060 ENSG00000100439 ABHD4 ABH4 abhydrolase domain containing 4 protein-coding 320.5-18 chr8 100305958 100306233 + 2 NA intron (NM_001280539, intron 2 of 10) intron (NM_001280539, intron 2 of 10) -2836 NM_015435 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 444-6 chr3 78368350 78368783 + 2 NA Intergenic Intergenic -319603 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 326-4 chr16 77509911 77510146 + 2 NA Intergenic Intergenic -74994 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 383.333-12 chr8 122701231 122701461 + 2 NA Intergenic Intergenic -7240 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 392-3 chr2 27081275 27081584 + 2 NA intron (NM_007046, intron 3 of 7) intron (NM_007046, intron 3 of 7) 2814 NM_007046 11117 Hs.63348 NM_007046 ENSG00000138080 EMILIN1 EMI|EMILIN|gp115 elastin microfibril interfacer 1 protein-coding 555-2 chr19 14020514 14020864 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -7459 NM_001311197 117579 Hs.352155 NM_080864 ENSG00000171136 RLN3 H3|RXN3|ZINS4|insl7 relaxin 3 protein-coding 294.834-3 chr2 118655256 118655437 + 2 NA Intergenic L1MB5|LINE|L1 -52380 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 403.334 chr10 50814231 50814458 + 2 NA intron (NM_001370131, intron 8 of 11) intron (NM_001370131, intron 8 of 11) 71283 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 246.667-23 chr6 162035505 162035754 + 2 NA intron (NM_013988, intron 2 of 8) L1M5|LINE|L1 564652 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 467-3 chr12 121639128 121639771 + 2 NA intron (NM_032790, intron 2 of 2) AluSx|SINE|Alu 12899 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 425-4 chr13 93204301 93204587 + 2 NA Intergenic Intergenic -22363 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 389-13 chr7 38931660 38932019 + 2 NA Intergenic AluSz6|SINE|Alu -22639 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 268.167-13 chr20 22453276 22453680 + 2 NA Intergenic Intergenic -32835 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 187.167-17 chr2 47076927 47077094 + 2 NA TTS (NM_001288955) TTS (NM_001288955) 78298 NM_001163561 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 459.667-3 chr6 132768128 132768422 + 2 NA Intergenic Intergenic -4816 NM_078488 8875 Hs.293130 NM_004665 ENSG00000112303 VNN2 FOAP-4|GPI-80 vanin 2 protein-coding 610.001 chr18 77626049 77626618 + 2 NA Intergenic Intergenic 367394 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 482-9 chr3 132246876 132247230 + 2 NA Intergenic Intergenic -70354 NM_001292037 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 414.166-2 chr14 76547059 76547384 + 2 NA Intergenic Intergenic 175874 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 756.001 chr11 46238737 46239350 + 2 NA Intergenic Intergenic -38619 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 375.833-2 chr1 174769926 174770465 + 2 NA intron (NM_001366451, intron 3 of 12) intron (NM_001366451, intron 3 of 12) -29543 NM_001366456 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 575.166-3 chr6 81753814 81754309 + 2 NA Intergenic CpG-23786 -1380 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 385-3 chr17 67229402 67229757 + 2 NA intron (NM_001330447, intron 3 of 32) intron (NM_001330447, intron 3 of 32) -15197 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 374-3 chr19 40510702 40510998 + 2 NA intron (NM_020971, intron 13 of 35) AluJo|SINE|Alu -19641 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 276.667-8 chr12 98645046 98645230 + 2 NA promoter-TSS (NM_153687) promoter-TSS (NM_153687) -152 NM_013229 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 393.5-7 chr19 35757861 35758142 + 2 NA promoter-TSS (NM_001367856) promoter-TSS (NM_001367856) -175 NM_001367856 148137 Hs.527982 NM_144692 ENSG00000167595 PROSER3 C19orf55 proline and serine rich 3 protein-coding 334.333-6 chr15 73704754 73705191 + 2 NA intron (NM_001024736, intron 6 of 9) intron (NM_001024736, intron 6 of 9) 20202 NM_001329628 80381 Hs.744915 NM_025240 ENSG00000103855 CD276 4Ig-B7-H3|B7-H3|B7H3|B7RP-2 CD276 molecule protein-coding 787.833 chrX 46978552 46979300 + 2 NA intron (NM_014735, intron 1 of 10) intron (NM_014735, intron 1 of 10) 66505 NM_014735 9767 Hs.371977 NM_014735 ENSG00000102221 JADE3 JADE-3|PHF16 jade family PHD finger 3 protein-coding 275.333-8 chr18 22865067 22865276 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger -68157 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 388.333-9 chr22 36096284 36096889 + 2 NA Intergenic L1MB7|LINE|L1 64169 NM_014349 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 483.5-4 chr3 156038989 156039346 + 2 NA Intergenic Intergenic -81381 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 179.333-46 chr7 53469309 53469490 + 2 NA Intergenic Intergenic 342532 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 834.834 chr2 82344218 82345097 + 2 NA Intergenic Intergenic -512146 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 519.167-6 chr5 149618422 149619183 + 2 NA intron (NM_001001669, intron 6 of 12) intron (NM_001001669, intron 6 of 12) 37304 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 281.834-6 chr5 28608886 28609376 + 2 NA Intergenic L1M3|LINE|L1 -317739 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 305.167-3 chr10 82322083 82322494 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -89368 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 312.333-5 chr11 57530588 57530850 + 2 NA promoter-TSS (NM_012456) promoter-TSS (NM_012456) 35 NM_012456 26519 Hs.235750 NM_012456 ENSG00000134809 TIMM10 TIM10|TIM10A|TIMM10A translocase of inner mitochondrial membrane 10 protein-coding 213.667-20 chr2 14014917 14015089 + 2 NA Intergenic L1MB8|LINE|L1 385955 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 287-23 chr3 138490043 138490253 + 2 NA Intergenic L1MA2|LINE|L1 55532 NM_001322831 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 379.167-2 chr1 233907106 233907354 + 2 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 2554 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 358.333-10 chr8 9706634 9706924 + 2 NA intron (NM_003747, intron 7 of 26) intron (NM_003747, intron 7 of 26) -34893 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 289 chr1 150050239 150050488 + 2 NA Intergenic MIR|SINE|MIR -17019 NM_001279353 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 300.5-26 chr9 26033556 26033716 + 2 NA Intergenic Intergenic -33039 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 233.333-11 chr15 55435152 55435500 + 2 NA intron (NM_001033560, intron 7 of 8) MLT1K|LTR|ERVL-MaLR -26816 NM_001204451 9236 Hs.285051 NM_004748 ENSG00000260916 CCPG1 CPR8 cell cycle progression 1 protein-coding 356-5 chr1 216359177 216359531 + 2 NA intron (NM_206933, intron 4 of 71) MIR|SINE|MIR 64042 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 345-8 chr16 73686735 73687009 + 2 NA Intergenic Intergenic 300067 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 485.5-2 chr19 47289216 47289850 + 2 NA Intergenic AluSz6|SINE|Alu 14648 NM_178511 255783 Hs.128690 NM_178511 ENSG00000257704 INAFM1 PRR24 InaF motif containing 1 protein-coding 347.501-3 chr8 11573768 11574012 + 2 NA Intergenic L1ME3G|LINE|L1 -2645 NR_040035 83655 Hs.742430 NR_040035 ENSG00000170983 LINC00208 C8orf14|NCRNA00208|VIR35 long intergenic non-protein coding RNA 208 ncRNA 816.667 chr10 96017041 96017648 + 2 NA intron (NM_001349008, intron 30 of 34) intron (NM_001349008, intron 30 of 34) 17253 NM_001159747 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 295.5-6 chr2 23796290 23796575 + 2 NA intron (NR_125717, intron 20 of 28) intron (NR_125717, intron 20 of 28) 130691 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 266-24 chr6 141274256 141274483 + 2 NA Intergenic L1ME3A|LINE|L1 590555 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 462.834-4 chr9 73129625 73130129 + 2 NA Intergenic Intergenic -21988 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 532.833-2 chr4 118981586 118982185 + 2 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 93031 NM_001128933 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 332.5-7 chr18 72252647 72252873 + 2 NA Intergenic Intergenic 291582 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 274.833-8 chr2 177162872 177163288 + 2 NA Intergenic Intergenic 49331 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 505.833-2 chr14 32469586 32470056 + 2 NA intron (NM_004274, intron 2 of 13) intron (NM_004274, intron 2 of 13) 140523 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 291.833-2 chr10 66167873 66168056 + 2 NA intron (NM_001127384, intron 13 of 17) LTR16B2|LTR|ERVL 596539 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 520.666 chr18 3664653 3665064 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 61121 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 290.5-15 chr2 210105514 210105764 + 2 NA intron (NM_001307976, intron 3 of 13) intron (NM_001307976, intron 3 of 13) 65770 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 373.5-10 chr8 10587248 10587531 + 2 NA Intergenic Intergenic 61857 NM_001197020 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 524.667-2 chr13 27984205 27984722 + 2 NA intron (NM_001105577, intron 1 of 1) intron (NM_001105577, intron 1 of 1) 4174 NM_001105577 646625 Hs.705356 NM_001105577 ENSG00000183463 URAD PRHOXNB ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase protein-coding 359.166-5 chr6 42770940 42771286 + 2 NA intron (NM_001318819, intron 1 of 13) intron (NM_001318819, intron 1 of 13) -12383 NR_134654 401261 Hs.656652 NM_001004322 LOC401261 - uncharacterized LOC401261 ncRNA 452-4 chr9 14433332 14433796 + 2 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) -34581 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 405.333-4 chr11 31631993 31632334 + 2 NA intron (NM_001288725, intron 6 of 10) intron (NM_001288725, intron 6 of 10) 122396 NM_001288726 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 175.167-29 chr3 61895114 61895238 + 2 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 333605 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 317 chr10 68998293 68998581 + 2 NA intron (NM_015634, intron 1 of 6) Charlie4a|DNA|hAT-Charlie 9634 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 382-5 chr18 2770216 2770436 + 2 NA intron (NM_015295, intron 39 of 47) intron (NM_015295, intron 39 of 47) -76680 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 246-16 chr2 116990210 116990452 + 2 NA Intergenic Intergenic -824360 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 530.167 chr11 45252334 45252795 + 2 NA exon (NM_001247987, exon 6 of 8) exon (NM_001247987, exon 6 of 8) 33777 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 665-2 chr5 137754147 137754894 + 2 NA promoter-TSS (NM_006805) promoter-TSS (NM_006805) -157 NM_006805 10949 Hs.96996 NM_006805 ENSG00000177733 HNRNPA0 HNRPA0 heterogeneous nuclear ribonucleoprotein A0 protein-coding 522.333-3 chr6 124928119 124928503 + 2 NA intron (NR_026876, intron 5 of 6) intron (NR_026876, intron 5 of 6) -34234 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 324.5-16 chr9 17495308 17495618 + 2 NA intron (NM_001365029, intron 25 of 25) Tigger3b|DNA|TcMar-Tigger -83603 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 225.334-5 chr5 63516122 63516325 + 2 NA Intergenic Intergenic 446069 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 290.5-19 chr4 87249473 87249634 + 2 NA Intergenic L1MB7|LINE|L1 -28935 NM_001292006 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 330-19 chr6 47233883 47234150 + 2 NA intron (NM_014452, intron 5 of 5) AluSq2|SINE|Alu 75889 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 200.666-8 chr5 63276674 63276800 + 2 NA Intergenic Intergenic 685555 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1260.5-2 chr7 103573039 103574070 + 2 NA intron (NM_005045, intron 30 of 64) intron (NM_005045, intron 30 of 64) -127347 NM_206885 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 242.5-34 chr4 157900243 157900582 + 2 NA Intergenic Intergenic -270340 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 511.333-4 chr11 352819 353126 + 2 NA Intergenic MER51B|LTR|ERV1 -16527 NM_178537 338707 Hs.148074 NM_178537 ENSG00000182272 B4GALNT4 - beta-1,4-N-acetyl-galactosaminyltransferase 4 protein-coding 302-20 chr6 56938678 56938915 + 2 NA intron (NM_001144769, intron 2 of 96) MLT1H|LTR|ERVL-MaLR 16034 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 221.833-7 chr14 87628234 87628397 + 2 NA Intergenic Intergenic 26979 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 239.667-15 chr14 54040886 54041082 + 2 NA Intergenic MIR3|SINE|MIR -84093 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 349-11 chr20 45203581 45203830 + 2 NA Intergenic L1M1|LINE|L1 -3328 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 467.667 chr12 24366778 24367230 + 2 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 143733 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 244.5-26 chr4 109819416 109819564 + 2 NA intron (NM_018983, intron 4 of 6) intron (NM_018983, intron 4 of 6) 3728 NM_018983 54433 Hs.69851 NM_018983 ENSG00000109534 GAR1 NOLA1 GAR1 ribonucleoprotein protein-coding 285-17 chr5 65080010 65080163 + 2 NA Intergenic Intergenic 311156 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 170-26 chr18 45167125 45167259 + 2 NA promoter-TSS (NM_001371319) promoter-TSS (NM_001371319) -771 NM_001371319 298-14 chr3 131381584 131381886 + 2 NA promoter-TSS (NM_152395) promoter-TSS (NM_152395) -30 NM_001171906 131870 Hs.282050 NM_152395 ENSG00000198585 NUDT16 - nudix hydrolase 16 protein-coding 303-6 chr11 112113567 112113957 + 2 NA Intergenic Intergenic 26889 NR_077060 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 356.001-3 chr5 34763285 34763610 + 2 NA intron (NM_015577, intron 3 of 17) intron (NM_015577, intron 3 of 17) -75717 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 361-13 chr6 87392776 87393236 + 2 NA Intergenic Intergenic -4118 NR_026784 63914 Hs.645177 NM_022084 ENSG00000111850 LINC01590 C6orf164|dJ102H19.4 long intergenic non-protein coding RNA 1590 ncRNA 298-17 chr7 39560907 39561167 + 2 NA Intergenic Intergenic -5367 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 447 chr1 115138049 115138383 + 2 NA Intergenic L2a|LINE|L2 -48713 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 186.167 chr1 43355125 43355233 + 2 NA TTS (NM_005373) TTS (NM_005373) -3802 NM_001255 991 Hs.524947 NM_001255 ENSG00000117399 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding 389.999 chr1 94865020 94865281 + 2 NA intron (NM_001258340, intron 11 of 14) intron (NM_001258340, intron 11 of 14) 40657 NM_001350223 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 272.667-16 chr19 41836531 41837089 + 2 NA TTS (NM_001291419) TTS (NM_001291419) 6917 NM_001291419 147719 Hs.98660 NM_173506 ENSG00000273111 LYPD4 SMR LY6/PLAUR domain containing 4 protein-coding 460.667-3 chr17 42017482 42018002 + 2 NA promoter-TSS (NM_001144766) promoter-TSS (NM_001144766) -45 NR_029431 7266 Hs.500156 NM_003315 ENSG00000168259 DNAJC7 DJ11|DJC7|TPR2|TTC2 DnaJ heat shock protein family (Hsp40) member C7 protein-coding 334.5-9 chr14 50566687 50567009 + 2 NA intron (NM_015915, intron 1 of 13) L1ME3Cz|LINE|L1 6823 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 828.834 chr10 99172274 99173370 + 2 NA intron (NM_021828, intron 2 of 11) AluSx|SINE|Alu 63053 NM_001166246 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 419.5-2 chr12 3873181 3873549 + 2 NA promoter-TSS (NM_001286521) promoter-TSS (NM_001286521) 34 NR_104461 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 352.5-15 chr7 36587864 36588128 + 2 NA intron (NM_001177507, intron 11 of 19) Charlie1a|DNA|hAT-Charlie 12124 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 355-15 chr9 34991919 34992147 + 2 NA intron (NM_001135005, intron 1 of 3) intron (NM_001135005, intron 1 of 3) 1743 NM_001135005 25822 Hs.237506 NM_012266 ENSG00000137094 DNAJB5 Hsc40 DnaJ heat shock protein family (Hsp40) member B5 protein-coding 526.167-2 chr11 48172659 48173277 + 2 NA Intergenic Intergenic -43842 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 244.5-20 chr2 209318353 209318547 + 2 NA Intergenic Intergenic -105597 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 245.667-22 chr5 74672898 74673114 + 2 NA intron (NM_001292004, intron 1 of 13) LTR89|LTR|ERVL? -12227 NM_000521 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 257.5-26 chr6 150500309 150500498 + 2 NA Intergenic L1M5|LINE|L1 -99482 NM_001029884 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 773.834 chr7 50679165 50680002 + 2 NA intron (NM_001371009, intron 2 of 15) intron (NM_001371009, intron 2 of 15) 25718 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 464.5-6 chr2 78670088 78670417 + 2 NA Intergenic L1MEf|LINE|L1 124721 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 266-23 chr6 121738616 121738873 + 2 NA Intergenic L1MEf|LINE|L1 303098 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 197.667-38 chr3 165509940 165510182 + 2 NA intron (NR_125764, intron 4 of 5) intron (NR_125764, intron 4 of 5) 303101 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 305.166-3 chr3 5057927 5058494 + 2 NA Intergenic AluJb|SINE|Alu -64082 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 266.667-6 chr12 115139300 115139569 + 2 NA Intergenic Intergenic -455259 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 423.334-4 chr21 25607558 25607843 + 2 NA promoter-TSS (NM_017446) promoter-TSS (NM_017446) -211 NM_080794 54148 Hs.420696 NM_017446 ENSG00000154719 MRPL39 C21orf92|L39mt|MRP-L5|MRPL5|MSTP003|PRED22|PRED66|RPML5 mitochondrial ribosomal protein L39 protein-coding 167-6 chr10 101536972 101537362 + 2 NA intron (NM_001256856, intron 11 of 13) intron (NM_001256856, intron 11 of 13) 51090 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 258.5-22 chr3 159312065 159312344 + 2 NA intron (NM_001197108, intron 1 of 6) MLT1J2|LTR|ERVL-MaLR 29558 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 277.001 chr17 70748455 70748683 + 2 NA Intergenic L1ME4a|LINE|L1 453610 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 448-2 chr1 152186782 152187167 + 2 NA Intergenic MIR3|SINE|MIR -27746 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 392 chr1 108554685 108555023 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -5246 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 242.5-6 chr10 33405269 33405423 + 2 NA Intergenic Intergenic -70441 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 537.501-3 chr16 87388416 87389012 + 2 NA intron (NM_001282683, intron 2 of 9) intron (NM_001282683, intron 2 of 9) 3407 NM_001282683 79791 Hs.567582 NM_024735 ENSG00000103264 FBXO31 FBX14|FBXO14|Fbx31|MRT45|pp2386 F-box protein 31 protein-coding 392.333 chr10 30839937 30840187 + 2 NA Intergenic Intergenic 116843 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 1024-2 chr2 88691072 88692039 + 2 NA promoter-TSS (NM_144563) promoter-TSS (NM_144563) -118 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 287-25 chr3 159300255 159300460 + 2 NA intron (NM_001197108, intron 1 of 6) AluJr|SINE|Alu 17711 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 551.501 chr19 41859635 41860115 + 2 NA promoter-TSS (NM_001022) promoter-TSS (NM_001022) -380 NM_001321485 6223 Hs.438429 NM_001022 ENSG00000105372 RPS19 DBA|DBA1|S19|eS19 ribosomal protein S19 protein-coding 257.333 chr1 24704807 24705001 + 2 NA Intergenic Intergenic -40543 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 288.667-3 chr11 84572928 84573507 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 147725 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 273.167 chr1 26997801 26998070 + 2 NA intron (NM_001013642, intron 1 of 1) intron (NM_001013642, intron 1 of 1) 4243 NM_001013642 388610 Hs.355747 NM_001013642 ENSG00000253368 TRNP1 C1orf225|TNRP|TRNP TMF1 regulated nuclear protein 1 protein-coding 794.334 chr6 145810292 145810851 + 2 NA intron (NM_001348092, intron 1 of 2) intron (NM_001348092, intron 1 of 2) 4224 NM_001348092 84085 Hs.421095 NM_032145 ENSG00000118496 FBXO30 Fbx30 F-box protein 30 protein-coding 357.667-12 chr4 113893792 113893997 + 2 NA Intergenic Intergenic 85753 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 407.167-2 chr1 102691578 102691985 + 2 NA Intergenic Intergenic 416715 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 256-26 chr7 29079473 29079711 + 2 NA intron (NM_001371264, intron 10 of 15) MIR|SINE|MIR -45441 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 420-8 chr21 36156277 36156678 + 2 NA promoter-TSS (NM_001320714) promoter-TSS (NM_001320714) -169 NR_038894 100506428 Hs.651214 NR_038892 ENSG00000236830 CBR3-AS1 PlncRNA-1|PlncRNA1 CBR3 antisense RNA 1 ncRNA 355.667-12 chr5 168318186 168318488 + 2 NA intron (NM_001161661, intron 1 of 22) L1MB3|LINE|L1 26692 NM_001161661 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 451.666 chr2 183626492 183626937 + 2 NA Intergenic Intergenic 502271 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 229.5-3 chr10 19923015 19923299 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 106725 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 367.333-5 chr3 153080931 153081148 + 2 NA Intergenic Intergenic -81187 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 391.833 chr10 61935217 61935454 + 2 NA intron (NM_032199, intron 2 of 9) L1ME1|LINE|L1 33636 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 591.334 chr19 13194261 13194921 + 2 NA Intergenic AluSp|SINE|Alu 44180 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 632.666 chr19 55160346 55160905 + 2 NA intron (NM_001256716, intron 9 of 11) intron (NM_001256716, intron 9 of 11) -2893 NM_000363 7137 Hs.709179 NM_000363 ENSG00000129991 TNNI3 CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI troponin I3, cardiac type protein-coding 298.167-8 chr2 205776040 205776311 + 2 NA intron (NM_201266, intron 15 of 16) intron (NM_201266, intron 15 of 16) 93674 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 489.666-3 chr8 88071362 88072035 + 2 NA intron (NM_005941, intron 7 of 9) L2a|LINE|L2 -197683 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 277.333-33 chr9 112793438 112793599 + 2 NA intron (NM_001012994, intron 1 of 8) intron (NM_001012994, intron 1 of 8) 42758 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 501.333-4 chrX 10722746 10723205 + 2 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -45236 NM_001098624 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 245.833-8 chr12 10211991 10212383 + 2 NA promoter-TSS (NM_031412) promoter-TSS (NM_031412) -690 NM_031412 23710 Hs.524250 NM_031412 ENSG00000139112 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA type A receptor associated protein like 1 protein-coding 397.667-2 chr10 4299254 4299620 + 2 NA Intergenic L1MB3|LINE|L1 -55525 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 190.167-28 chr9 134099159 134099410 + 2 NA Intergenic L1MC3|LINE|L1 -31258 NM_007371 8019 Hs.522472 NM_007371 ENSG00000169925 BRD3 ORFX|RING3L bromodomain containing 3 protein-coding 400-6 chr2 32552003 32552253 + 2 NA intron (NM_016252, intron 65 of 73) intron (NM_016252, intron 65 of 73) 19975 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 356.667-4 chr14 36494013 36494314 + 2 NA intron (NR_161365, intron 1 of 4) intron (NR_161365, intron 1 of 4) 19372 NR_161363 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 460.334-4 chr9 119969331 119969925 + 2 NA Intergenic Intergenic 34568 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 538.667-2 chr3 11236753 11237613 + 2 NA intron (NM_001098211, intron 1 of 1) intron (NM_001098211, intron 1 of 1) 11202 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 367-5 chr11 124163556 124163784 + 2 NA Intergenic L1MA5|LINE|L1 -21546 NM_001355213 26497 Hs.538726 NM_001355213 ENSG00000197309 OR10D3 HTPCRX09|OR10D3P olfactory receptor family 10 subfamily D member 3 (putative) protein-coding 332.333-7 chr16 86810236 86810482 + 2 NA Intergenic MIRb|SINE|MIR 88268 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 434-11 chr5 59761344 59761713 + 2 NA intron (NM_001165899, intron 3 of 16) Tigger3b|DNA|TcMar-Tigger 7320 NM_001364602 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 484 chr11 73625643 73626187 + 2 NA Intergenic Intergenic -20666 NM_001130033 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 329.333-12 chr3 190802919 190803220 + 2 NA Intergenic L1MA1|LINE|L1 59625 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 187.333-31 chr4 30450743 30450954 + 2 NA Intergenic Intergenic -269521 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 389.833-5 chr16 80197947 80198469 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -342526 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 246-30 chr6 38671996 38672311 + 2 NA Intergenic Intergenic 30992 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 239.833-10 chr3 185406437 185406722 + 2 NA intron (NM_004721, intron 1 of 13) intron (NM_004721, intron 1 of 13) 43443 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 415.667-9 chr8 71265658 71265949 + 2 NA intron (NM_001370335, intron 14 of 20) intron (NM_001370335, intron 14 of 20) 90903 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 489.167-3 chr7 95476791 95477532 + 2 NA Intergenic Intergenic -8740 NM_145872 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 517 chr1 214112788 214113206 + 2 NA Intergenic Intergenic 124464 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 398-18 chr8 27614195 27614821 + 2 NA intron (NM_001831, intron 1 of 8) CpG 192 NM_001831 1191 Hs.436657 NM_001831 ENSG00000120885 CLU AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 clusterin protein-coding 529.833-3 chr22 32518737 32519273 + 2 NA intron (NM_003490, intron 12 of 13) MLT1B|LTR|ERVL-MaLR 43768 NM_001257990 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 376.5-6 chr9 76321160 76321434 + 2 NA intron (NM_001190482, intron 29 of 36) intron (NM_001190482, intron 29 of 36) 73129 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 354.5-11 chr6 51856048 51856251 + 2 NA intron (NM_138694, intron 48 of 66) intron (NM_138694, intron 48 of 66) 231464 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 225-13 chr18 45212894 45213325 + 2 NA 5' UTR (NM_001242692, exon 1 of 21) 5' UTR (NM_001242692, exon 1 of 21) 114 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 768.667 chr12 56079118 56079839 + 2 NA promoter-TSS (NM_001982) promoter-TSS (NM_001982) -547 NM_001982 2065 Hs.118681 NM_001982 ENSG00000065361 ERBB3 ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 erb-b2 receptor tyrosine kinase 3 protein-coding 320.167-3 chr12 85834461 85834733 + 2 NA intron (NM_005447, intron 1 of 1) intron (NM_005447, intron 1 of 1) 1812 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 380.833-4 chr3 71875388 71875902 + 2 NA Intergenic Intergenic -90497 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 253.167-5 chr14 60003999 60004226 + 2 NA intron (NR_075071, intron 21 of 32) intron (NR_075071, intron 21 of 32) 84399 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 412-3 chr14 52135145 52135362 + 2 NA Intergenic L1PA13|LINE|L1 -66194 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 444.501 chr1 219836519 219836913 + 2 NA Intergenic Intergenic 91935 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 569.167 chr16 27971696 27972598 + 2 NA intron (NM_001109763, intron 1 of 6) intron (NM_001109763, intron 1 of 6) -83990 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 166.167-19 chr17 81296220 81296360 + 2 NA promoter-TSS (NM_138570) promoter-TSS (NM_138570) -983 NM_001037984 124565 Hs.352240 NM_138570 ENSG00000157637 SLC38A10 PP1744 solute carrier family 38 member 10 protein-coding 375.833-6 chr7 44582468 44582731 + 2 NA promoter-TSS (NM_001303060) promoter-TSS (NM_001303060) -304 NM_001303058 222068 Hs.598832 NM_182547 ENSG00000158604 TMED4 ERS25|GMP25iso|HNLF|p24a3|p24alpha3 transmembrane p24 trafficking protein 4 protein-coding 366.833-5 chr4 17468812 17469333 + 2 NA Intergenic Intergenic 43018 NM_000320 5860 Hs.75438 NM_000320 ENSG00000151552 QDPR DHPR|HDHPR|PKU2|SDR33C1 quinoid dihydropteridine reductase protein-coding 371.833-9 chr5 85108474 85108714 + 2 NA Intergenic L1MEg|LINE|L1 -723714 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 743.666 chr14 76644757 76645699 + 2 NA Intergenic Intergenic -116240 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 527.5-4 chr4 174365329 174365736 + 2 NA Intergenic Intergenic -58263 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 254-31 chrX 150264681 150264844 + 2 NA Intergenic L1MB8|LINE|L1 36758 NR_031748 100313839 NR_031748 ENSG00000252454 MIR2114 - microRNA 2114 ncRNA 256-33 chr9 121695661 121695842 + 2 NA intron (NM_032552, intron 2 of 16) intron (NM_032552, intron 2 of 16) -47034 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 491.833-3 chr5 152560360 152560764 + 2 NA Intergenic Intergenic -155283 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 426-15 chr6 97978617 97979262 + 2 NA Intergenic LTR1A2|LTR|ERV1 -45592 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 367.5-6 chr5 112158785 112159067 + 2 NA intron (NM_001347887, intron 22 of 23) intron (NM_001347887, intron 22 of 23) -1600 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 303-13 chr2 101204851 101205119 + 2 NA Intergenic Intergenic -47901 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 283-18 chr7 7584983 7585263 + 2 NA intron (NM_001370078, intron 4 of 8) intron (NM_001370078, intron 4 of 8) 17097 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 385.167-8 chr19 12059371 12059723 + 2 NA Intergenic AluY|SINE|Alu -5152 NR_134326 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 405.667-4 chr2 164538411 164538847 + 2 NA intron (NM_004490, intron 3 of 13) intron (NM_004490, intron 3 of 13) 29866 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 447-2 chr14 97920130 97920530 + 2 NA Intergenic Intergenic 57794 NR_152749 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 225.5-34 chr9 129377499 129377616 + 2 NA Intergenic L1ME4a|LINE|L1 40634 NR_120685 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 290.5-14 chr2 172593635 172593827 + 2 NA intron (NM_002610, intron 10 of 10) Tigger13a|DNA|TcMar-Tigger 37641 NM_001278549 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 532.499-2 chr8 11943889 11944263 + 2 NA Intergenic Intergenic 30523 NM_001033018 613210 Hs.558285 NM_001033018 ENSG00000205884 DEFB136 DEFB137 defensin beta 136 protein-coding 390.167-8 chr9 121550307 121550686 + 2 NA Intergenic Intergenic -16606 NM_032552 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 618.501 chr14 30751196 30751734 + 2 NA Intergenic MIR|SINE|MIR -123070 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 337-9 chr5 100706756 100706970 + 2 NA Intergenic Intergenic 109702 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 212.834-8 chr5 17822955 17823167 + 2 NA intron (NR_134286, intron 2 of 7) intron (NR_134286, intron 2 of 7) 15787 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 838.667 chr5 13957197 13958084 + 2 NA Intergenic Intergenic -13160 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 269.333 chr1 109938482 109938740 + 2 NA Intergenic Intergenic 27762 NM_172212 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 164-50 chr6 44580834 44580949 + 2 NA Intergenic Intergenic -29010 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 172.667-11 chr11 11022492 11022625 + 2 NA Intergenic MamRep564|Unknown|Unknown 164341 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 546.5-3 chr6 1396589 1397201 + 2 NA Intergenic Intergenic -6484 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 266.5-14 chr17 70715409 70715640 + 2 NA Intergenic AluSq2|SINE|Alu 486655 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 335.834-8 chr3 14920889 14921590 + 2 NA intron (NM_152536, intron 13 of 19) intron (NM_152536, intron 13 of 19) 26266 NR_046254 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 667 chr1 237799592 237800405 + 2 NA intron (NM_001035, intron 97 of 104) intron (NM_001035, intron 97 of 104) -62177 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 280-16 chr20 15536610 15536893 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 339911 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 318.333-3 chr11 8090934 8091192 + 2 NA intron (NM_177972, intron 3 of 11) intron (NM_177972, intron 3 of 11) 9701 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 203.167-26 chr5 41841718 41842177 + 2 NA intron (NR_157114, intron 6 of 15) intron (NR_157114, intron 6 of 15) 1710 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 166-35 chr17 56681668 56681850 + 2 NA Intergenic CR1-3_Croc|LINE|CR1 88060 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 275-14 chr19 29657730 29658163 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -7515 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 388.667-2 chr18 39374229 39374443 + 2 NA intron (NR_024391, intron 3 of 3) L1MCa|LINE|L1 247839 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 407 chr10 102309730 102310000 + 2 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 64333 NM_001199378 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 322.667 chr1 82819236 82819535 + 2 NA Intergenic (CTTTA)n|Simple_repeat|Simple_repeat -83798 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 331.333-11 chr8 66501816 66502156 + 2 NA intron (NM_152765, intron 2 of 5) intron (NM_152765, intron 2 of 5) 8420 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 445.333-8 chr21 24889027 24889269 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 48598 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 434.5-5 chr8 67252708 67253136 + 2 NA intron (NM_006421, intron 18 of 38) intron (NM_006421, intron 18 of 38) 90859 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 433.333 chr10 24319438 24319934 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 44001 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 254.167-8 chr11 114449142 114449381 + 2 NA intron (NM_015523, intron 6 of 6) intron (NM_015523, intron 6 of 6) 9794 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 503.833-2 chr11 62424342 62424854 + 2 NA Intergenic AluJo|SINE|Alu 5565 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 403-6 chr5 57256388 57256722 + 2 NA intron (NM_001203246, intron 9 of 10) intron (NM_001203246, intron 9 of 10) 42481 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 322.333 chr10 99395889 99396249 + 2 NA TTS (NM_002079) TTS (NM_002079) 34555 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 216.667-41 chr5 154359788 154359960 + 2 NA intron (NM_198321, intron 4 of 11) intron (NM_198321, intron 4 of 11) 12768 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 320.667-5 chr10 44939828 44940140 + 2 NA intron (NR_033842, intron 1 of 7) L1MB7|LINE|L1 19705 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 402-10 chr6 104031644 104031992 + 2 NA Intergenic L2|LINE|L2 827728 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 278.667-28 chr7 33066614 33066852 + 2 NA Intergenic L1PA16|LINE|L1 -3936 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 370.834-3 chr14 70257463 70257971 + 2 NA Intergenic Intergenic -9916 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 446.5-4 chr2 72145061 72145508 + 2 NA intron (NM_019885, intron 1 of 5) CpG 2578 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 793.334-2 chr3 5305329 5306170 + 2 NA Intergenic Intergenic -55494 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 263-11 chr6 73516658 73516835 + 2 NA 3' UTR (NM_001402, exon 8 of 8) 3' UTR (NM_001402, exon 8 of 8) 1692 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 435.834 chr11 63638150 63638557 + 2 NA intron (NM_015459, intron 8 of 12) L4_C_Mam|LINE|RTE-X -23884 NM_001128203 11145 Hs.502775 NM_007069 ENSG00000176485 PLAAT3 AdPLA|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3 phospholipase A and acyltransferase 3 protein-coding 275.333-20 chr9 107914048 107914373 + 2 NA Intergenic L1M5|LINE|L1 -424441 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 223.834-5 chr16 11328300 11328486 + 2 NA Intergenic MIRb|SINE|MIR 16819 NR_135174 105371083 Hs.737495 NR_135174 ENSG00000263080 LOC105371083 - uncharacterized LOC105371083 ncRNA 297-12 chr2 39367837 39368137 + 2 NA intron (NM_003618, intron 2 of 33) intron (NM_003618, intron 2 of 33) 69298 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 584.667 chr1 209827522 209828241 + 2 NA promoter-TSS (NM_014388) promoter-TSS (NM_014388) -91 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 379.333-5 chr2 226224426 226224692 + 2 NA Intergenic L1ME3|LINE|L1 81765 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 301.834-12 chr8 67785077 67785361 + 2 NA Intergenic Intergenic -38859 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 553-9 chr6 110390795 110391345 + 2 NA TTS (NM_001368170) TTS (NM_001368170) 24505 NM_003649 8528 Hs.591348 NM_003649 ENSG00000203797 DDO DASOX|DDO-1|DDO-2 D-aspartate oxidase protein-coding 423.5-3 chr15 68105872 68106185 + 2 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 51452 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 724.501 chr8 89689053 89689740 + 2 NA Intergenic Intergenic 68315 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 426.333-5 chr8 120417304 120417743 + 2 NA intron (NM_014078, intron 5 of 6) L1MC4|LINE|L1 27627 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 470.167-3 chr16 46554146 46554474 + 2 NA intron (NR_026556, intron 4 of 16) LTR13|LTR|ERVK 14787 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 338.167-4 chr16 10221822 10222310 + 2 NA Intergenic 7SLRNA|srpRNA|srpRNA -39158 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 271.333-16 chr20 40564072 40564308 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 125046 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 309.667-22 chr8 74854810 74855078 + 2 NA TTS (NM_001324403) TTS (NM_001324403) 30410 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 266 chr1 42258750 42258930 + 2 NA intron (NM_001198850, intron 4 of 12) intron (NM_001198850, intron 4 of 12) 76115 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 597.667-2 chr4 32337490 32337873 + 2 NA Intergenic X6B_LINE|LINE|CR1 -13357 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 482-6 chr2 161988265 161988621 + 2 NA Intergenic Intergenic 85772 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 465.667-2 chr2 218727818 218728390 + 2 NA intron (NM_014640, intron 2 of 19) MER1A|DNA|hAT-Charlie 17269 NM_014640 9654 Hs.471405 NM_014640 ENSG00000135912 TTLL4 - tubulin tyrosine ligase like 4 protein-coding 414.5-2 chr1 236540227 236540512 + 2 NA intron (NM_201543, intron 5 of 10) intron (NM_201543, intron 5 of 10) -15861 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 380-5 chr10 69232158 69232552 + 2 NA intron (NM_025130, intron 2 of 17) intron (NM_025130, intron 2 of 17) 135 NR_120648 101928994 Hs.562925 NR_120648 ENSG00000229261 LOC101928994 - uncharacterized LOC101928994 ncRNA 559.001 chr1 34596901 34597517 + 2 NA Intergenic Intergenic 72485 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 284.667-4 chr1 178031762 178032216 + 2 NA intron (NM_001356505, intron 5 of 33) intron (NM_001356505, intron 5 of 33) 5987 NR_151492 111240474 NM_001356505 CRYZL2P-SEC16B - CRYZL2P-SEC16B readthrough protein-coding 238-2 chr1 173222901 173223095 + 2 NA Intergenic Intergenic -15667 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 580.333 chr2 235779003 235779585 + 2 NA intron (NM_001037131, intron 6 of 17) intron (NM_001037131, intron 6 of 17) -261373 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 405.333-10 chr6 43961332 43961567 + 2 NA Intergenic L1MB7|LINE|L1 -39136 NR_160956 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 344-6 chr11 80361593 80361953 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 401030 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 363.333-6 chr4 64424380 64424608 + 2 NA Intergenic Intergenic -15034 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 446-5 chr22 28474702 28475069 + 2 NA intron (NM_001145418, intron 2 of 22) HAL1|LINE|L1 15016 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 917.832-2 chr22 25235706 25236492 + 2 NA Intergenic Intergenic 16460 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 287.667-15 chr2 37828166 37828450 + 2 NA intron (NR_110012, intron 3 of 3) intron (NR_110012, intron 3 of 3) 1403 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 393.333-6 chr6 110999599 110999800 + 2 NA intron (NM_001289111, intron 4 of 8) intron (NM_001289111, intron 4 of 8) 17661 NM_032194 84154 Hs.372265 NM_032194 ENSG00000197498 RPF2 BXDC1|bA397G5.4 ribosome production factor 2 homolog protein-coding 680.167 chr11 86818419 86819357 + 2 NA intron (NR_120591, intron 1 of 4) intron (NR_120591, intron 1 of 4) 18346 NM_001293179 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 304.667-12 chr3 18393921 18394154 + 2 NA intron (NM_001131010, intron 7 of 10) intron (NM_001131010, intron 7 of 10) 31302 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 396-3 chr2 20614036 20614246 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -21593 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 334-3 chr10 43942921 43943158 + 2 NA intron (NR_033846, intron 2 of 7) intron (NR_033846, intron 2 of 7) 30637 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 247-37 chr9 74458971 74459200 + 2 NA Intergenic MER57D|LTR|ERV1 -38250 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 503.167 chr13 102555894 102556382 + 2 NA Intergenic Intergenic -40848 NM_001367947 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 312-8 chr14 48078734 48078991 + 2 NA Intergenic L1MC3|LINE|L1 -283848 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 297.667-13 chr19 39842629 39842884 + 2 NA intron (NM_001436, intron 1 of 8).2 MER5B|DNA|hAT-Charlie 3623 NM_001436 2091 Hs.299002 NM_001436 ENSG00000105202 FBL FIB|FLRN|Nop1|RNU3IP1 fibrillarin protein-coding 240.5-28 chr8 124994911 124995037 + 2 NA Intergenic Intergenic 3224 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 553.666 chr2 121094983 121095431 + 2 NA Intergenic Intergenic 189995 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 331.333-12 chr9 35874397 35874593 + 2 NA Intergenic Intergenic -4094 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 655.333 chr7 154459113 154459565 + 2 NA intron (NR_157196, intron 2 of 25) Charlie29a|DNA|hAT-Charlie 154180 NR_157196 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 404.666-4 chr18 39021996 39022320 + 2 NA Intergenic Intergenic 600017 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 306.667-26 chrX 87664608 87664805 + 2 NA intron (NM_057162, intron 9 of 10) intron (NM_057162, intron 9 of 10) 146904 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 488.001 chr2 190837824 190838184 + 2 NA Intergenic Intergenic -42817 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 438.834-4 chr6 16339045 16339451 + 2 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 100661 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 282.667-17 chr2 216215148 216215300 + 2 NA Intergenic LTR57-int|LTR|ERVL -1665 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 506.5-4 chr6 38548065 38548570 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 47750 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 375.5-4 chr3 47380587 47380954 + 2 NA promoter-TSS (NM_001304482) promoter-TSS (NM_001304482) -251 NM_015466 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 464.333-3 chr18 74317302 74317654 + 2 NA intron (NM_001174123, intron 1 of 13) intron (NM_001174123, intron 1 of 13) 1639 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 288.5-29 chr7 3610681 3610930 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 309553 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 178.833-33 chr5 142922177 142922346 + 2 NA intron (NR_146198, intron 10 of 22) intron (NR_146198, intron 10 of 22) -53351 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 452.667 chr11 111527336 111527688 + 2 NA intron (NM_207430, intron 4 of 6) intron (NM_207430, intron 4 of 6) 12727 NM_001100388 399949 Hs.411600 NM_207430 ENSG00000183644 C11orf88 - chromosome 11 open reading frame 88 protein-coding 287.5-19 chr6 5262543 5262691 + 2 NA intron (NM_006567, intron 1 of 6) intron (NM_006567, intron 1 of 6) 1104 NM_006567 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 214-30 chr2 68197316 68197456 + 2 NA intron (NM_000945, intron 2 of 5) L1ME2|LINE|L1 39498 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 240.667-9 chr11 103346972 103347107 + 2 NA intron (NM_001377, intron 82 of 88) L1MC5a|LINE|L1 237613 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 621.333-2 chr18 8449835 8450472 + 2 NA Intergenic L1MC4|LINE|L1 -83119 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 908.001 chr21 17045181 17045832 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -393384 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 446.167-5 chr2 63889039 63889444 + 2 NA intron (NM_001001521, intron 8 of 9) L2a|LINE|L2 47361 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 406.5-2 chr10 117252743 117253252 + 2 NA intron (NM_003054, intron 3 of 15) intron (NM_003054, intron 3 of 15) 11883 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 396.834 chr1 29697809 29698191 + 2 NA Intergenic Intergenic 339612 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 299-4 chr10 79142891 79143272 + 2 NA intron (NM_020338, intron 3 of 24) (TCTGTC)n|Simple_repeat|Simple_repeat 74115 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 709.501 chr12 133079997 133080905 + 2 NA 5' UTR (NM_001300776, exon 1 of 4) 5' UTR (NM_001300776, exon 1 of 4) 248 NM_001300776 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 719.834 chr8 68333666 68334176 + 2 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -2430 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 251.667-3 chr1 107750555 107750759 + 2 NA intron (NM_006113, intron 13 of 26) intron (NM_006113, intron 13 of 26) -62158 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 292-3 chr1 220772257 220772440 + 2 NA intron (NM_001331042, intron 4 of 4) L1ME4a|LINE|L1 -14565 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 174.167-32 chr4 73021590 73021886 + 2 NA Intergenic Intergenic 47978 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 347.333-15 chr5 136140177 136140471 + 2 NA intron (NM_001001420, intron 1 of 6) L2a|LINE|L2 -5434 NR_026763 9597 Hs.59666 NM_022001 ENSG00000164621 SMAD5-AS1 DAMS|SMAD5AS|SMAD5OS SMAD5 antisense RNA 1 ncRNA 593.834 chr22 24894285 24895171 + 2 NA intron (NM_001098497, intron 17 of 24) MLT1H|LTR|ERVL-MaLR 51967 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 224.833-27 chr8 121323651 121323965 + 2 NA Intergenic Intergenic -315538 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 417.5-9 chr19 27616383 27616708 + 2 NA Intergenic ALR/Alpha|Satellite|centr -176886 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 295.167-17 chr5 128988550 128988922 + 2 NA exon (NM_001317984, exon 4 of 11) exon (NM_001317984, exon 4 of 11) 23248 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 240-45 chr5 25897441 25897663 + 2 NA Intergenic Tigger17c|DNA|TcMar-Tigger 706599 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 271-10 chr15 97553497 97553663 + 2 NA non-coding (NR_110756, exon 4 of 4) non-coding (NR_110756, exon 4 of 4) 7118 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 466.668 chr12 90853513 90853968 + 2 NA Intergenic Intergenic -64283 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 455.667-2 chr4 48329927 48330291 + 2 NA Intergenic Intergenic -11420 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 280-10 chr17 75164739 75165202 + 2 NA TTS (NM_006937) TTS (NM_006937) -10287 NR_109933 51155 Hs.532803 NM_016185 ENSG00000189159 JPT1 ARM2|HN1|HN1A Jupiter microtubule associated homolog 1 protein-coding 363.334-2 chr11 26831680 26831883 + 2 NA Intergenic Intergenic -109721 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 305.333-4 chr10 6681646 6681841 + 2 NA Intergenic MER34A|LTR|ERV1 46673 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 440-8 chr22 29031441 29031918 + 2 NA promoter-TSS (NR_046851) promoter-TSS (NR_046851) -203 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 393-6 chr6 76861568 76862068 + 2 NA Intergenic Intergenic -268195 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 222.667-28 chr3 35860530 35860725 + 2 NA Intergenic L1M5|LINE|L1 116151 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 642.5-2 chr5 78295601 78296158 + 2 NA Intergenic Intergenic -1124 NM_003664 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 212-5 chr1 167442279 167442602 + 2 NA intron (NM_000734, intron 1 of 7) intron (NM_000734, intron 1 of 7) 76089 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 428.5-4 chr3 11378976 11379590 + 2 NA intron (NM_001136031, intron 16 of 17) intron (NM_001136031, intron 16 of 17) 106886 NM_001144912 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 370.5-2 chr1 237551713 237551922 + 2 NA intron (NM_001035, intron 27 of 104) MIR|SINE|MIR 80698 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 332.833-13 chr6 82251895 82252151 + 2 NA Intergenic Intergenic -4279 NM_015525 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 440.667-5 chr5 142915950 142916288 + 2 NA intron (NR_146198, intron 10 of 22) intron (NR_146198, intron 10 of 22) -47209 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 355.334-9 chr8 141988434 141989035 + 2 NA Intergenic Intergenic -187605 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 535.667 chr12 43957714 43958249 + 2 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 121900 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 427.999 chr9 68715963 68716269 + 2 NA intron (NM_001278253, intron 1 of 13) intron (NM_001278253, intron 1 of 13) 10702 NM_001278253 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 348.834-5 chrX 134450936 134451233 + 2 NA Intergenic L2|LINE|L2 -9081 NM_000194 3251 Hs.412707 NM_000194 ENSG00000165704 HPRT1 HGPRT|HPRT hypoxanthine phosphoribosyltransferase 1 protein-coding 872.167 chr9 19464573 19465541 + 2 NA Intergenic Intergenic 56048 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 1198.83 chr17 58112823 58113861 + 2 NA Intergenic Intergenic 29923 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 321.666-6 chr9 21682236 21682570 + 2 NA Intergenic Intergenic -120233 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 268.833-8 chr17 77514413 77514728 + 2 NA Intergenic Intergenic -12431 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 379.333-2 chr12 45603844 45604182 + 2 NA Intergenic L3|LINE|CR1 123908 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 465.334 chr7 131072205 131072519 + 2 NA intron (NR_109850, intron 2 of 5) MER41B|LTR|ERV1 34668 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 620-3 chr22 31662006 31662600 + 2 NA promoter-TSS (NM_001326419) promoter-TSS (NM_001326419) -88 NM_001326420 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 481 chr12 58648226 58648650 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 56736 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 313.5-4 chr12 29309483 29309740 + 2 NA intron (NM_001271783, intron 6 of 11) intron (NM_001271783, intron 6 of 11) 8237 NR_103860 100506606 Hs.298851 NR_103860 ENSG00000257176 LOC100506606 - uncharacterized LOC100506606 ncRNA 335.334-4 chr14 81212082 81212416 + 2 NA intron (NM_001278940, intron 2 of 9) intron (NM_001278940, intron 2 of 9) 8710 NM_015859 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 181.334-11 chr7 33692055 33692173 + 2 NA Intergenic Intergenic -212801 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 460.667 chr12 3117453 3117799 + 2 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 40247 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 289.667-18 chr3 56340612 56341072 + 2 NA intron (NR_132749, intron 2 of 17) intron (NR_132749, intron 2 of 17) 127625 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 796.166 chr9 86202049 86202705 + 2 NA Intergenic Intergenic 53656 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 371.667-5 chr4 123415811 123416075 + 2 NA Intergenic Intergenic 16403 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 479-8 chr8 80577974 80578287 + 2 NA Intergenic CpG 91904 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 553-2 chr10 110918515 110918933 + 2 NA promoter-TSS (NR_136749) promoter-TSS (NR_136749) 212 NM_001195306 92482 Hs.232543 NM_001195304 ENSG00000214413 BBIP1 BBIP10|BBS18|NCRNA00081|bA348N5.3 BBSome interacting protein 1 protein-coding 333.5-12 chr2 45602691 45602965 + 2 NA intron (NM_018079, intron 2 of 20) intron (NM_018079, intron 2 of 20) 8439 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 336-9 chr2 23378755 23378977 + 2 NA Intergenic Intergenic -6313 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 542-2 chr14 47551933 47552258 + 2 NA intron (NM_001113498, intron 1 of 16) L2a|LINE|L2 122859 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 534.334-2 chr21 29135158 29135516 + 2 NA intron (NM_001286620, intron 2 of 4) intron (NM_001286620, intron 2 of 4) 4123 NM_001371371 338.333-10 chr5 76175292 76175481 + 2 NA intron (NM_014979, intron 2 of 12) intron (NM_014979, intron 2 of 12) 92003 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 346.333-9 chr7 118299678 118299900 + 2 NA Intergenic L3|LINE|CR1 75085 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 472.166 chr22 26986833 26987350 + 2 NA Intergenic L2b|LINE|L2 73427 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 633-3 chr3 132399836 132400292 + 2 NA Intergenic L2a|LINE|L2 -17438 NM_015268 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 519.999 chr1 246140016 246140428 + 2 NA intron (NM_022743, intron 5 of 11) MIRb|SINE|MIR 277190 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 389-2 chr11 23874703 23875139 + 2 NA Intergenic Intergenic -455731 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 832.334-2 chr9 15606566 15607423 + 2 NA intron (NM_001355547, intron 5 of 24) intron (NM_001355547, intron 5 of 24) 43016 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 381-9 chr2 196078202 196078672 + 2 NA Intergenic Intergenic -9600 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 772.666-2 chr9 73081999 73082639 + 2 NA Intergenic Intergenic -69546 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 427.667-2 chr10 101568480 101568729 + 2 NA Intergenic Intergenic 19653 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 332.667-15 chr7 156827664 156828040 + 2 NA intron (NR_146958, intron 3 of 14) intron (NR_146958, intron 3 of 14) 65331 NM_001363413 64327 Hs.209989 NM_022458 ENSG00000105983 LMBR1 ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|ZRS limb development membrane protein 1 protein-coding 336.5-10 chr22 35191521 35191804 + 2 NA intron (NR_126356, intron 2 of 5) MER68|LTR|ERVL 39394 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 619-4 chr7 8190325 8190788 + 2 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 71496 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 290.666-4 chr2 179239229 179239530 + 2 NA intron (NM_178123, intron 1 of 17) intron (NM_178123, intron 1 of 17) 25453 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 619.001 chr11 4492975 4493466 + 2 NA Intergenic LTR13|LTR|ERVK 4341 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 340-12 chr3 153595325 153595646 + 2 NA intron (NR_146713, intron 4 of 6) MER20|DNA|hAT-Charlie 110990 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 268.333-10 chr17 11936509 11936974 + 2 NA intron (NM_001372, intron 65 of 68) intron (NM_001372, intron 65 of 68) 53839 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 253.833-13 chr7 2933937 2934327 + 2 NA intron (NM_001324281, intron 11 of 25) AluJr|SINE|Alu -89824 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 377.167-2 chr10 25792034 25792403 + 2 NA Intergenic L1MA4|LINE|L1 140506 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 538.5 chr7 99616586 99616944 + 2 NA promoter-TSS (NM_001350979) promoter-TSS (NM_001350979) -181 NM_001350984 221785 Hs.446297 NM_145115 ENSG00000197037 ZSCAN25 ZNF498 zinc finger and SCAN domain containing 25 protein-coding 719.334-3 chr2 177758322 177759460 + 2 NA intron (NM_001077197, intron 11 of 20) intron (NM_001077197, intron 11 of 20) 85569 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 364-12 chr6 131204391 131204598 + 2 NA intron (NM_016377, intron 6 of 7) intron (NM_016377, intron 6 of 7) -45910 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 253.334-2 chr10 64666922 64667112 + 2 NA Intergenic L1ME1|LINE|L1 -158511 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 726.5-2 chr9 134170641 134171383 + 2 NA Intergenic Intergenic -6448 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 551.167-3 chr3 142828335 142828901 + 2 NA intron (NM_013363, intron 6 of 8) intron (NM_013363, intron 6 of 8) 60465 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 230.333-6 chr11 76524455 76524758 + 2 NA intron (NM_001300942, intron 13 of 21) intron (NM_001300942, intron 13 of 21) 79581 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 408.666-5 chr9 23585790 23586035 + 2 NA intron (NR_121602, intron 11 of 27) intron (NR_121602, intron 11 of 27) 86487 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 278-24 chr6 56642839 56643021 + 2 NA promoter-TSS (NM_001723) promoter-TSS (NM_001723) -41 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 436.5 chr10 31320113 31320409 + 2 NA promoter-TSS (NM_001323665) promoter-TSS (NM_001323665) 186 NR_148975 220930 Hs.372654 NR_024284 ENSG00000237036 ZEB1-AS1 - ZEB1 antisense RNA 1 ncRNA 421.667 chr1 84179450 84179680 + 2 NA intron (NM_001300915, intron 5 of 11) intron (NM_001300915, intron 5 of 11) -2067 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 377.834-4 chr6 38267293 38267587 + 2 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -214156 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 358.5-2 chr1 164135902 164136293 + 2 NA Intergenic L1MA10|LINE|L1 -423263 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 295.333-13 chr20 53221628 53221884 + 2 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 36473 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 554.833-4 chr8 95266177 95266489 + 2 NA intron (NM_001363260, intron 1 of 4) intron (NM_001363260, intron 1 of 4) -2503 NR_038202 100616530 Hs.554328 NR_038201 ENSG00000253773 C8orf37-AS1 - C8orf37 antisense RNA 1 ncRNA 280.667-9 chr20 59402940 59403323 + 2 NA Intergenic Intergenic 102520 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 426.167-5 chr16 80417568 80417838 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -123031 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 316.167-8 chr2 45237964 45238720 + 2 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 16599 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 425.667-5 chrX 101781196 101781594 + 2 NA Intergenic L1ME1|LINE|L1 76182 NR_159736 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 253.333-37 chr7 148527592 148527887 + 2 NA Intergenic MER66C|LTR|ERV1 -63027 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 406-3 chr14 47917862 47918168 + 2 NA Intergenic Intergenic -123001 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 283-23 chr7 151113667 151113839 + 2 NA promoter-TSS (NM_001308305) promoter-TSS (NM_001308305) -885 NM_001308305 116988 Hs.647075 NM_031946 ENSG00000133612 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 359.5-9 chr8 59922133 59922607 + 2 NA Intergenic Intergenic 359030 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 288.5-30 chr7 22109945 22110432 + 2 NA Intergenic Intergenic 83557 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 534.666 chr16 31459084 31459402 + 2 NA 5' UTR (NM_001105247, exon 1 of 6) 5' UTR (NM_001105247, exon 1 of 6) 247 NM_001105247 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 238.333-10 chr11 94837473 94837667 + 2 NA intron (NM_130847, intron 6 of 12) intron (NM_130847, intron 6 of 12) 69214 NM_130847 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 347-6 chr14 51098308 51098762 + 2 NA Intergenic Intergenic -2831 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 184.333-38 chr7 97050082 97050226 + 2 NA Intergenic Intergenic -25323 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 363-3 chr12 85817157 85817411 + 2 NA intron (NM_005447, intron 1 of 1) intron (NM_005447, intron 1 of 1) 19125 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 366.167-3 chr2 57170371 57170689 + 2 NA Intergenic Intergenic -737121 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 335.5-10 chr6 56543485 56543733 + 2 NA intron (NM_001144770, intron 53 of 94) intron (NM_001144770, intron 53 of 94) 99280 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 263.334-5 chr17 58708010 58708267 + 2 NA intron (NM_058216, intron 4 of 8) Tigger17c|DNA|TcMar-Tigger 15536 NM_058216 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 688.834-2 chr13 26186176 26186765 + 2 NA intron (NM_183045, intron 5 of 5) CpG 35287 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 471-3 chr18 24519265 24519645 + 2 NA Intergenic L1MC4|LINE|L1 58818 NM_021624 59340 Hs.287388 NM_021624 ENSG00000134489 HRH4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 369-7 chr2 7081431 7081630 + 2 NA Intergenic L1ME1|LINE|L1 -3650 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 167.833-3 chr1 169812472 169812601 + 2 NA intron (NM_001320047, intron 9 of 24) intron (NM_001320047, intron 9 of 24) 17496 NM_001366771 55732 Hs.443551 NM_018186 ENSG00000000460 C1orf112 - chromosome 1 open reading frame 112 protein-coding 838.001 chr5 173572799 173573546 + 2 NA Intergenic Intergenic -6462 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 441.667-8 chr6 163956525 163956850 + 2 NA Intergenic Intergenic -285203 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 288-8 chr13 72841057 72841269 + 2 NA intron (NR_146206, intron 9 of 16) intron (NR_146206, intron 9 of 16) 59030 NM_001349655 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 357-4 chr12 15592418 15592756 + 2 NA intron (NM_030671, intron 13 of 13) intron (NM_030671, intron 13 of 13) 45976 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 464.167-2 chr17 26703726 26704154 + 2 NA Intergenic ALR/Alpha|Satellite|centr 385301 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 435-6 chr9 29830771 29831097 + 2 NA Intergenic Intergenic 577520 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 436.833-9 chr8 88580503 88580849 + 2 NA Intergenic Intergenic -253193 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 169.5-39 chr6 39806423 39806571 + 2 NA intron (NM_015345, intron 1 of 24) intron (NM_015345, intron 1 of 24) 13500 NM_015345 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 392.833 chr1 173010911 173011107 + 2 NA Intergenic Intergenic 39954 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 808.001 chr1 77536681 77537536 + 2 NA intron (NM_012093, intron 13 of 13) intron (NM_012093, intron 13 of 13) 145550 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 278-17 chr2 183598453 183598619 + 2 NA Intergenic Intergenic 474093 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 243-24 chrX 3326043 3326236 + 2 NA intron (NM_015419, intron 4 of 6) (AT)n|Simple_repeat|Simple_repeat 20513 NM_015419 25878 Hs.369422 NM_015419 ENSG00000101825 MXRA5 - matrix remodeling associated 5 protein-coding 417.5-3 chr10 132836580 132837317 + 2 NA intron (NM_001200049, intron 44 of 57) intron (NM_001200049, intron 44 of 57) -50801 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B|SPAX8 NK6 homeobox 2 protein-coding 376 chr12 45731351 45731607 + 2 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 1770 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 890.332 chr5 42057171 42057701 + 2 NA Intergenic Intergenic 117909 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 467.167 chr19 46282651 46283205 + 2 NA Intergenic AluSx1|SINE|Alu -14114 NM_152795 64344 Hs.420830 NM_022462 ENSG00000124440 HIF3A HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17 hypoxia inducible factor 3 subunit alpha protein-coding 545.5-2 chrX 106873909 106874451 + 2 NA 3' UTR (NM_017752, exon 21 of 21) 3' UTR (NM_017752, exon 21 of 21) -25984 NM_001171092 9075 Hs.522746 NM_020384 ENSG00000165376 CLDN2 - claudin 2 protein-coding 691.333 chr1 163174815 163175461 + 2 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) 13463 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 345.999-3 chr2 211879281 211879550 + 2 NA intron (NM_001042599, intron 3 of 26) L1ME4b|LINE|L1 546945 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 356.333-12 chr8 42674316 42674509 + 2 NA Intergenic Intergenic -22954 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 281-4 chr11 17846979 17847173 + 2 NA intron (NR_104040, intron 11 of 11) intron (NR_104040, intron 11 of 11) 111128 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 351.833-4 chr17 18141188 18141376 + 2 NA intron (NM_016239, intron 21 of 64) Zaphod2|DNA|hAT-Tip100 32526 NM_016239 51168 Hs.462390 NM_016239 ENSG00000091536 MYO15A DFNB3|MYO15 myosin XVA protein-coding 506.833 chr12 54191361 54192076 + 2 NA Intergenic Intergenic -2724 NM_001351262 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 294.667-2 chr1 181091609 181091763 + 2 NA 3' UTR (NM_016545, exon 1 of 1) 3' UTR (NM_016545, exon 1 of 1) 2986 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 402.167-9 chr3 186563839 186564173 + 2 NA exon (NM_018138, exon 2 of 8) exon (NM_018138, exon 2 of 8) 3333 NM_018138 55171 Hs.518469 NM_018138 ENSG00000113838 TBCCD1 - TBCC domain containing 1 protein-coding 508.334-2 chr10 26168859 26169419 + 2 NA intron (NM_017433, intron 28 of 34) intron (NM_017433, intron 28 of 34) -47168 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 376-14 chr9 133406767 133407176 + 2 NA TTS (NM_153710) TTS (NM_153710) -7368 NR_024514 11093 Hs.131433 NM_139025 ENSG00000160323 ADAMTS13 ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP ADAM metallopeptidase with thrombospondin type 1 motif 13 protein-coding 797.333-4 chr9 28381950 28382572 + 2 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 337044 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 412.667-8 chr4 73655974 73656466 + 2 NA Intergenic L1ME1|LINE|L1 -35589 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 793 chr16 28945439 28946219 + 2 NA Intergenic CpG -5168 NM_032815 84901 Hs.513470 NM_032815 ENSG00000176953 NFATC2IP ESC2|NIP45|RAD60 nuclear factor of activated T cells 2 interacting protein protein-coding 216.667-10 chr12 118931864 118932010 + 2 NA Intergenic Intergenic -49604 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 262.166-5 chr2 7191990 7192245 + 2 NA Intergenic Intergenic -114237 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 373-2 chr10 76122242 76122498 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 339609 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 451.5 chr2 128028102 128028640 + 2 NA promoter-TSS (NM_001330302) promoter-TSS (NM_001330302) -312 NM_001330302 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 473.668 chr11 37547167 37547581 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -391227 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 276-6 chr11 124478637 124478920 + 2 NA Intergenic L1ME3|LINE|L1 -37693 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 523.167-4 chr19 15629412 15629959 + 2 NA 3' UTR (NM_007253, exon 13 of 13) 3' UTR (NM_007253, exon 13 of 13) -11212 NM_000896 4051 Hs.106242 NM_000896 ENSG00000186529 CYP4F3 CPF3|CYP4F|CYPIVF3|LTB4H cytochrome P450 family 4 subfamily F member 3 protein-coding 221.834-4 chr16 78924268 78924592 + 2 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 676307 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 321.5-17 chr3 78950718 78951028 + 2 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 68586 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 290-5 chr12 65080986 65081199 + 2 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 40213 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 431-4 chr12 49778348 49778599 + 2 NA Intergenic L2|LINE|L2 36664 NM_001098576 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 220.167-30 chr8 137055093 137055296 + 2 NA Intergenic Intergenic 358394 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 312-7 chr14 47701037 47701219 + 2 NA Intergenic L1M3d|LINE|L1 -26174 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 356.666-2 chr12 14676336 14676698 + 2 NA intron (NM_004963, intron 7 of 26) intron (NM_004963, intron 7 of 26) 20082 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 433.5-7 chr3 65964185 65964612 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -9840 NR_145422 151877 Hs.476636 NR_145422 ENSG00000272610 MAGI1-IT1 - MAGI1 intronic transcript 1 ncRNA 365.5-12 chr6 49994943 49995249 + 2 NA Intergenic MIRc|SINE|MIR -25471 NM_001037729 245927 Hs.582789 NM_001037729 ENSG00000214642 DEFB113 DEFB-13 defensin beta 113 protein-coding 420.666-6 chr7 67625163 67625491 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy 289351 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 405.333-12 chr7 90178586 90179065 + 2 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) 24356 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 232.334-7 chr2 60559464 60559625 + 2 NA Intergenic Intergenic -5890 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 381.334 chr17 59749838 59750182 + 2 NA intron (NM_001329401, intron 4 of 9) L2a|LINE|L2 42356 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 420.167-4 chr10 55288654 55289027 + 2 NA intron (NM_001354404, intron 2 of 34) L1MB1|LINE|L1 -310202 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 472-5 chr7 45916334 45916714 + 2 NA intron (NM_001013398, intron 3 of 4) intron (NM_001013398, intron 3 of 4) 4748 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 203.167-7 chr16 17571898 17572049 + 2 NA Intergenic Intergenic -101013 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 240-35 chr3 7130171 7130395 + 2 NA intron (NM_000844, intron 1 of 9) AluSx3|SINE|Alu -236266 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 488-7 chrX 68574347 68574633 + 2 NA Intergenic Intergenic -73179 NM_001142503 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 242 chr1 36621854 36621989 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -138607 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 225-29 chr5 76668694 76668853 + 2 NA exon (NM_001285460, exon 22 of 35) exon (NM_001285460, exon 22 of 35) -43630 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 348.334-6 chr21 34544140 34544410 + 2 NA intron (NM_004414, intron 1 of 3) MLT1E3|LTR|ERVL-MaLR -17265 NM_001331016 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 291.167 chr1 157041567 157042150 + 2 NA intron (NM_014784, intron 1 of 39) intron (NM_014784, intron 1 of 39) 3884 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 322.666-3 chr10 61301903 61302120 + 2 NA Intergenic Intergenic -150628 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 481.333 chr12 80195016 80195604 + 2 NA intron (NM_001368062, intron 6 of 62) intron (NM_001368062, intron 6 of 62) -14143 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 247.834 chr14 43565966 43566191 + 2 NA Intergenic Intergenic 941205 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 246-24 chr5 59509730 59509915 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 76676 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 427 chr10 79368618 79369039 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 21359 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 281-14 chr21 27821425 27821644 + 2 NA Intergenic L1PA16|LINE|L1 99155 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 398-2 chr10 113126779 113127150 + 2 NA intron (NM_001349871, intron 1 of 11) CpG 331 NM_001349871 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 260-5 chr12 7588689 7588969 + 2 NA Intergenic HERVP71A-int|LTR|ERV1 77079 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 606.834-2 chr7 143416557 143417055 + 2 NA intron (NR_033897, intron 2 of 4) intron (NR_033897, intron 2 of 4) -7950 NM_005232 2041 Hs.89839 NM_005232 ENSG00000146904 EPHA1 EPH|EPHT|EPHT1 EPH receptor A1 protein-coding 415.833 chr1 66649708 66650098 + 2 NA intron (NM_001308203, intron 7 of 21) MIR|SINE|MIR 21463 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 228.333-23 chr5 92345017 92345215 + 2 NA Intergenic (ATATATATA)n|Simple_repeat|Simple_repeat -961799 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 410.167-3 chr10 114304389 114304927 + 2 NA intron (NM_001001936, intron 11 of 18) intron (NM_001001936, intron 11 of 18) 65044 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 432.001-3 chr7 48154776 48155223 + 2 NA Intergenic L1MEf|LINE|L1 -16459 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 304.5-17 chr4 55857059 55857642 + 2 NA intron (NM_001024924, intron 1 of 18) AluYc3|SINE|Alu 3700 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 278-8 chr12 47069888 47070138 + 2 NA Intergenic Intergenic -9590 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 508-4 chr6 144150899 144151407 + 2 NA intron (NM_003764, intron 1 of 1) intron (NM_003764, intron 1 of 1) 636 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 518.334 chr7 110861924 110862305 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -228892 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 318.334-4 chr14 71504638 71504873 + 2 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 16894 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 171.333-44 chr5 170221231 170221469 + 2 NA Intergenic Intergenic -11635 NR_161261 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 344-2 chr1 59724863 59725064 + 2 NA intron (NM_001350790, intron 15 of 16) L1MC3|LINE|L1 8333 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 223-32 chr3 41316150 41316407 + 2 NA intron (NR_136342, intron 33 of 34) L1MB7|LINE|L1 116773 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 208.667-7 chr11 58477597 58477792 + 2 NA Intergenic Intergenic 30411 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 503.167-2 chr5 16180818 16181205 + 2 NA intron (NR_149044, intron 1 of 1) intron (NR_149044, intron 1 of 1) 770 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 998 chr12 103548214 103549065 + 2 NA intron (NR_110103, intron 1 of 4) Charlie7|DNA|hAT-Charlie 845 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LINC02401 - long intergenic non-protein coding RNA 2401 ncRNA 291-2 chr1 71521831 71522096 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 315049 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 469.333-3 chr18 37538027 37538305 + 2 NA intron (NM_001353701, intron 1 of 1) intron (NM_001353701, intron 1 of 1) 27632 NM_001353732 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 339.667-13 chr2 29196648 29197039 + 2 NA exon (NM_001353765, exon 9 of 10) exon (NM_001353765, exon 9 of 10) 27057 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 477.333-4 chr14 49628021 49628454 + 2 NA intron (NM_018139, intron 1 of 2) intron (NM_018139, intron 1 of 2) 6993 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 939.667-3 chr6 63598146 63598931 + 2 NA Intergenic LTR33C|LTR|ERVL 26526 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 396.167-8 chr4 91488882 91489132 + 2 NA intron (NM_001145065, intron 10 of 10) L2a|LINE|L2 788295 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 260-32 chrX 134396421 134396614 + 2 NA intron (NM_032458, intron 5 of 9) intron (NM_032458, intron 5 of 9) 23205 NM_032458 84295 Hs.356501 NM_032335 ENSG00000156531 PHF6 BFLS|BORJ|CENP-31 PHD finger protein 6 protein-coding 316.334-9 chr22 40823792 40824072 + 2 NA TTS (NM_001278589) TTS (NM_001278589) -4533 NR_104237 10478 Hs.474938 NM_006358 ENSG00000100372 SLC25A17 PMP34 solute carrier family 25 member 17 protein-coding 231.333-27 chr4 130395921 130396135 + 2 NA Intergenic Intergenic 19667 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 228.666-12 chr7 41326071 41326225 + 2 NA Intergenic Intergenic 224544 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 417.667-4 chr6 151209078 151209335 + 2 NA intron (NR_125868, intron 1 of 2) intron (NR_125868, intron 1 of 2) 19251 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 682.334 chr15 81400448 81401206 + 2 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -26614 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 197.333-3 chr10 9278282 9278438 + 2 NA intron (NR_108039, intron 1 of 1) intron (NR_108039, intron 1 of 1) 2747 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 458-8 chr6 79785209 79785607 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner 26838 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 658.333-2 chr11 64300708 64301547 + 2 NA intron (NM_001039496, intron 2 of 4) CpG-4402 769 NM_001039496 25858 Hs.97174 NM_001039496 ENSG00000219435 CATSPERZ C11orf20|TEX40 catsper channel auxiliary subunit zeta protein-coding 311.5-11 chr21 30604839 30605086 + 2 NA Intergenic L1M1|LINE|L1 3875 NM_181620 337979 Hs.553700 NM_181620 ENSG00000186924 KRTAP22-1 KAP22.1 keratin associated protein 22-1 protein-coding 213.334-12 chr6 42862230 42862522 + 2 NA intron (NM_001318819, intron 12 of 13) L1ME4b|LINE|L1 -17240 NR_134563 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 508.833-6 chr5 99063359 99063777 + 2 NA Intergenic MIR|SINE|MIR -133854 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 346.5-10 chr6 90987584 90987906 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie -400673 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 1146.5 chr10 71318972 71320097 + 2 NA 5' UTR (NM_001363518, exon 1 of 6) 5' UTR (NM_001363518, exon 1 of 6) 275 NM_018344 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 508.833 chr10 66455757 66456338 + 2 NA intron (NM_001127384, intron 11 of 17) L1MD1|LINE|L1 -469989 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 494.333 chr2 88669537 88670184 + 2 NA Intergenic Intergenic -21813 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 445.333-2 chr12 13661287 13661817 + 2 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -284807 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 632.167-2 chr11 119641947 119642494 + 2 NA intron (NM_203285, intron 5 of 7) intron (NM_203285, intron 5 of 7) 86980 NM_002855 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 516.5-3 chr3 32781251 32781706 + 2 NA Intergenic CpG -36519 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 395.001-4 chr5 28637313 28637811 + 2 NA Intergenic L1ME3A|LINE|L1 -289308 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 423.334-8 chr7 113773967 113774407 + 2 NA Intergenic Intergenic 144822 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 420.167-10 chr9 134456256 134456572 + 2 NA Intergenic Intergenic 49854 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 257.667-8 chr17 78971156 78971509 + 2 NA TTS (NM_005567) TTS (NM_005567) 8591 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 307.334-9 chr8 135271150 135271368 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 37128 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 418.5-8 chr9 77177186 77177558 + 2 NA promoter-TSS (NM_015186) promoter-TSS (NM_015186) -73 NM_015186 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 791-2 chr6 129498777 129499566 + 2 NA intron (NM_000426, intron 58 of 64) intron (NM_000426, intron 58 of 64) 211006 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 411.501-3 chr2 176111365 176111671 + 2 NA Intergenic Intergenic 4238 NM_021192 3237 Hs.421136 NM_021192 ENSG00000128713 HOXD11 HOX4|HOX4F homeobox D11 protein-coding 504.666-3 chr17 17603415 17603765 + 2 NA Intergenic Intergenic -11882 NM_148172 10400 Hs.714193 NM_007169 ENSG00000133027 PEMT PEAMT|PEMPT|PEMT2|PLMT|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 605.333-2 chr16 81730246 81730963 + 2 NA Intergenic Intergenic -48687 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 305.167-11 chr5 8829189 8829657 + 2 NA Intergenic L1PB3|LINE|L1 -10309 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 241.667-20 chr3 107660300 107660484 + 2 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 137430 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 306.667-21 chr6 55446786 55447014 + 2 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 119431 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 700.334 chr7 108452539 108453207 + 2 NA intron (NM_001371132, intron 1 of 30) intron (NM_001371132, intron 1 of 30) 3524 NM_001193583 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 361.833-3 chr8 134862925 134863220 + 2 NA intron (NR_125427, intron 1 of 2) AluJo|SINE|Alu 13137 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 693.168 chrX 52920777 52921607 + 2 NA Intergenic CpG 22133 NM_001099684 727866 Hs.6451 NM_001099684 ENSG00000179304 FAM156B TMEM29B family with sequence similarity 156 member B protein-coding 469.501 chr5 149905592 149905986 + 2 NA intron (NM_000440, intron 7 of 21) intron (NM_000440, intron 7 of 21) 27188 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 615.166 chr8 139214775 139215480 + 2 NA Intergenic Intergenic -301086 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 334-15 chr8 124452902 124453100 + 2 NA TTS (NM_017956) TTS (NM_017956) 2181 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 888.666 chr2 219642412 219643095 + 2 NA TTS (NM_201574) TTS (NM_201574) 15123 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 186.167-27 chr8 126833965 126834160 + 2 NA Intergenic Intergenic -179092 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 400.833-3 chr6 44068807 44069446 + 2 NA intron (NR_125864, intron 1 of 4) L1MB3|LINE|L1 5526 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 270-5 chr10 31388404 31388609 + 2 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) 11249 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 282-16 chr19 41411291 41411520 + 2 NA intron (NM_001164783, intron 3 of 8) intron (NM_001164783, intron 3 of 8) 13587 NM_001164783 593 Hs.433307 NM_000709 ENSG00000248098 BCKDHA BCKDE1A|MSU|MSUD1|OVD1A branched chain keto acid dehydrogenase E1 subunit alpha protein-coding 271.5-33 chr5 63428882 63429177 + 2 NA Intergenic Intergenic 533263 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 366-4 chr14 50752356 50752543 + 2 NA intron (NM_016350, intron 20 of 28) intron (NM_016350, intron 20 of 28) -69348 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 312.5-7 chr12 106057317 106057683 + 2 NA Intergenic L1MEc|LINE|L1 82533 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 401.333-4 chr14 57026621 57026988 + 2 NA Intergenic L1MEc|LINE|L1 213646 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 571.667-2 chr17 41739942 41740418 + 2 NA Intergenic Intergenic -5534 NM_001079871 9001 Hs.158300 NM_003949 ENSG00000173805 HAP1 HAP2|HIP5|HLP|hHLP1 huntingtin associated protein 1 protein-coding 480-4 chr5 94326158 94326413 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -214586 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 276.5-4 chr16 63969887 63970276 + 2 NA Intergenic MIRc|SINE|MIR 1151982 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 247.333-14 chr2 220195119 220195343 + 2 NA Intergenic Intergenic -288666 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 249-31 chr6 162700423 162700670 + 2 NA intron (NM_004562, intron 1 of 11) MIRb|SINE|MIR -26586 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 408 chr14 77610063 77610310 + 2 NA intron (NM_004863, intron 1 of 11) AluSz|SINE|Alu 6581 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 666.666-2 chr14 86038382 86039019 + 2 NA intron (NR_110155, intron 1 of 3) MSTC-int|LTR|ERVL-MaLR 104022 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 529-2 chr17 64017301 64017891 + 2 NA intron (NM_001099788, intron 1 of 5) L1M5|LINE|L1 3037 NM_001099789 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 325.333-11 chr4 56054805 56055027 + 2 NA Intergenic Intergenic 105971 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 260-25 chr7 92768117 92768447 + 2 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 65677 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 315.167-12 chr9 37259545 37259736 + 2 NA intron (NM_001289120, intron 2 of 8) MER45R|DNA|hAT-Tip100 139042 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 366.167-5 chr2 160979605 160979820 + 2 NA Intergenic Intergenic -157243 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 473.667 chr14 52355105 52355632 + 2 NA Intergenic Intergenic 41056 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 358-12 chr5 170100570 170100771 + 2 NA Intergenic Intergenic -5227 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 545.833 chr7 27183782 27184220 + 2 NA intron (NM_005523, intron 1 of 1) intron (NM_005523, intron 1 of 1) 1215 NM_005523 3207 Hs.249171 NM_005523 ENSG00000005073 HOXA11 HOX1|HOX1I|RUSAT1 homeobox A11 protein-coding 308-22 chrX 10262728 10263009 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 105893 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 274.667-23 chr7 96547336 96547589 + 2 NA intron (NR_163953, intron 2 of 5) intron (NR_163953, intron 2 of 5) -43939 NR_163948 534.667-5 chr8 82331822 82332265 + 2 NA Intergenic Intergenic -489757 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 395.333-3 chr1 151913034 151913255 + 2 NA Intergenic L1ME1|LINE|L1 -3633 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 459.334-3 chr2 44349061 44349546 + 2 NA intron (NM_001171617, intron 1 of 13) L1MC4|LINE|L1 10446 NM_001042385 9581 Hs.444349 NM_006036 ENSG00000138078 PREPL CMS22 prolyl endopeptidase like protein-coding 659.833 chr9 132507409 132508164 + 2 NA intron (NM_207417, intron 4 of 6) intron (NM_207417, intron 4 of 6) -74820 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 611.167-2 chr12 55715816 55716472 + 2 NA promoter-TSS (NR_037657) promoter-TSS (NR_037657) 110 NM_001487 2647 Hs.94672 NM_001487 ENSG00000135441 BLOC1S1 BLOS1|BORCS1|GCN5L1|MICoA|RT14 biogenesis of lysosomal organelles complex 1 subunit 1 protein-coding 563.333-5 chr5 60829049 60829415 + 2 NA intron (NM_024930, intron 1 of 8) intron (NM_024930, intron 1 of 8) 15037 NM_001297618 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 198-20 chr2 59728398 59728600 + 2 NA Intergenic Intergenic 510791 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 414-2 chr16 57553812 57554056 + 2 NA intron (NM_153837, intron 1 of 11) L1ME1|LINE|L1 11291 NM_001304376 221188 Hs.187884 NM_153837 ENSG00000159618 ADGRG5 GPR114|PGR27 adhesion G protein-coupled receptor G5 protein-coding 367-8 chr14 84414602 84414983 + 2 NA Intergenic L1MA5|LINE|L1 -857140 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 460.333-4 chr16 67170045 67170648 + 2 NA promoter-TSS (NM_001276307) promoter-TSS (NM_001276307) -151 NM_001276309 8996 Hs.513667 NM_003946 ENSG00000140939 NOL3 ARC|FCM|MYOCL1|MYP|NOP|NOP30 nucleolar protein 3 protein-coding 289-3 chr10 93333964 93334177 + 2 NA intron (NM_013451, intron 41 of 53) intron (NM_013451, intron 41 of 53) 148264 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 275.833 chr1 42913285 42913783 + 2 NA Intergenic Intergenic 45334 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 527-4 chr8 53451804 53452102 + 2 NA Intergenic L1M4a1|LINE|L1 72012 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 282.834-14 chr9 107977547 107977809 + 2 NA Intergenic Intergenic -487909 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 191.667-35 chr3 98366960 98367236 + 2 NA Intergenic MER4-int|LTR|ERV1 13244 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 453.833 chr18 55577657 55578102 + 2 NA intron (NM_001348217, intron 2 of 18) MER131|DNA?|DNA? 8240 NM_001348217 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 426.167-4 chr14 51539385 51539815 + 2 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 50472 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 167.334-6 chr4 15627573 15627733 + 2 NA intron (NR_036464, intron 8 of 11) MIRb|SINE|MIR 27704 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 192-8 chr12 98566953 98567146 + 2 NA Intergenic Intergenic -26576 NM_005888 5250 Hs.290404 NM_002635 ENSG00000075415 SLC25A3 OK/SW-cl.48|PHC|PTP solute carrier family 25 member 3 protein-coding 221-34 chr7 94301093 94301271 + 2 NA Intergenic Intergenic 91010 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 415.667-7 chr4 42523812 42524152 + 2 NA intron (NM_001105529, intron 20 of 35) intron (NM_001105529, intron 20 of 35) 126494 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 413.334-9 chr4 127732892 127733239 + 2 NA intron (NM_001318467, intron 1 of 6) MER20B|DNA|hAT-Charlie 2665 NM_031291 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 543-5 chr8 129921348 129921751 + 2 NA intron (NM_001353256, intron 2 of 13) AluJb|SINE|Alu 18262 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 429.166 chr15 39171946 39172547 + 2 NA Intergenic Intergenic -78423 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 396-7 chr7 11342469 11342700 + 2 NA Intergenic Intergenic 368712 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 416.833-5 chr9 113111581 113111859 + 2 NA promoter-TSS (NR_024376) promoter-TSS (NR_024376) -43 NR_024376 100128385 Hs.99052 NR_024376 ENSG00000225684 FAM225B C9orf110|LINC00256B|NCRNA00256B family with sequence similarity 225 member B ncRNA 418.833-2 chr5 16489145 16489436 + 2 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) 19708 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 184-45 chr6 145734317 145734457 + 2 NA promoter-TSS (NR_038246) promoter-TSS (NR_038246) -482 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 267.5-10 chr14 24436656 24436944 + 2 NA intron (NM_001290256, intron 7 of 7) intron (NM_001290256, intron 7 of 7) 6001 NM_020195 56948 Hs.643552 NM_020195 ENSG00000100445 SDR39U1 C14orf124|HCDI short chain dehydrogenase/reductase family 39U member 1 protein-coding 309.167-12 chr3 63625025 63625290 + 2 NA Intergenic L2a|LINE|L2 -27518 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 203.5-34 chr4 87151290 87151481 + 2 NA Intergenic L1ME1|LINE|L1 68883 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 601.167-5 chr8 126702395 126703035 + 2 NA Intergenic L1PA16|LINE|L1 -144237 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 242.334-3 chr13 86331150 86331444 + 2 NA Intergenic MamRep1151|LTR?|LTR? -531878 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 263.333-5 chr13 42713751 42714051 + 2 NA Intergenic Intergenic -67649 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 659.168 chr6 797472 798177 + 2 NA Intergenic Intergenic -70674 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 581.5-2 chr3 148823918 148824337 + 2 NA Intergenic L2c|LINE|L2 -3684 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 185-2 chr1 61835258 61835407 + 2 NA intron (NM_001350145, intron 17 of 43) L2a|LINE|L2 -10743 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 193.833-3 chr11 84714385 84714534 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 6483 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 252-5 chr1 116886565 116886776 + 2 NA Intergenic Intergenic -23246 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 461.999 chr5 2485981 2486400 + 2 NA Intergenic L1M4|LINE|L1 -173989 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 211.333-49 chr8 79160671 79160863 + 2 NA Intergenic Intergenic -171421 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 390.666-3 chr2 211056191 211056435 + 2 NA Intergenic Intergenic 438742 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 503.5 chr14 48336881 48337138 + 2 NA Intergenic L1PA13|LINE|L1 -541995 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 414.501-2 chr8 78902591 78902881 + 2 NA Intergenic Intergenic 65207 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 462.5-8 chr6 27752968 27753338 + 2 NA Intergenic Intergenic -8591 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 341 chr1 76890602 76890894 + 2 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 23268 NM_001320273 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 278.333-9 chr15 26449679 26449851 + 2 NA Intergenic Intergenic 179325 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 321.833-5 chr13 20163537 20163835 + 2 NA Intergenic Intergenic -2634 NM_021954 2700 Hs.130313 NM_021954 ENSG00000121743 GJA3 CTRCT14|CX46|CZP3 gap junction protein alpha 3 protein-coding 1097.17 chr10 102917024 102918508 + 2 NA promoter-TSS (NM_017649) promoter-TSS (NM_017649) -528 NM_017649 54805 Hs.643509 NM_017649 ENSG00000148842 CNNM2 ACDP2|HOMG6|HOMGSMR cyclin and CBS domain divalent metal cation transport mediator 2 protein-coding 432.667-8 chr7 54874439 54874865 + 2 NA Intergenic L1MEc|LINE|L1 115339 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 402.167-14 chr7 103406862 103407313 + 2 NA intron (NR_135802, intron 8 of 17) MER119|DNA|hAT-Charlie 36124 NR_120442 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 301.167-3 chr12 41885007 41885182 + 2 NA Intergenic Intergenic 120905 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 235-20 chr3 74305500 74305668 + 2 NA intron (NM_020872, intron 12 of 21) L1ME3A|LINE|L1 215556 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 166.5-18 chr17 34205545 34205690 + 2 NA Intergenic Intergenic -21985 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 275.5-11 chr16 64541146 64541318 + 2 NA Intergenic Intergenic 580831 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 504.666-2 chr13 73884836 73885279 + 2 NA intron (NM_007249, intron 3 of 7) L2|LINE|L2 248872 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 171.333-41 chr5 22920794 22921040 + 2 NA Intergenic Intergenic -67573 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 229-11 chr2 102986994 102987126 + 2 NA Intergenic Intergenic -2631 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 278.667-15 chr18 71445372 71445585 + 2 NA Intergenic L1MEc|LINE|L1 133478 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 383.5 chr15 45307095 45307536 + 2 NA Intergenic Intergenic -28093 NR_120335 101928414 NR_120335 ENSG00000259520 LOC101928414 - uncharacterized LOC101928414 ncRNA 454-13 chr9 110623525 110624078 + 2 NA Intergenic Intergenic -44060 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 251.667-29 chr5 43638432 43638716 + 2 NA intron (NM_012343, intron 7 of 21) intron (NM_012343, intron 7 of 21) -35344 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 372-14 chr8 82777173 82777402 + 2 NA Intergenic Intergenic -134817 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 427.167 chr1 8314008 8314929 + 2 NA Intergenic Intergenic -3617 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5|IDDNPF solute carrier family 45 member 1 protein-coding 256-31 chr9 29755324 29755516 + 2 NA Intergenic Intergenic -541819 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 321.5-5 chr11 119694440 119694681 + 2 NA intron (NM_203285, intron 1 of 7) intron (NM_203285, intron 1 of 7) 34640 NM_002855 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 396.333-8 chr6 38072319 38072633 + 2 NA intron (NM_021943, intron 3 of 5) intron (NM_021943, intron 3 of 5) 252749 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 451-3 chr20 52747669 52747956 + 2 NA Intergenic Intergenic 126974 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 592.333 chr12 48852264 48852786 + 2 NA promoter-TSS (NM_004818) promoter-TSS (NM_004818) -362 NM_004818 9416 Hs.130098 NM_004818 ENSG00000174243 DDX23 PRPF28|SNRNP100|U5-100K|U5-100KD|prp28 DEAD-box helicase 23 protein-coding 548.167-4 chr6 14692520 14692924 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -407268 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 308.499-2 chr6 87929672 87929947 + 2 NA Intergenic Intergenic -118032 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 384.5-4 chr12 87928682 87929000 + 2 NA Intergenic Intergenic 100560 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 225.167-15 chr2 112275423 112275784 + 2 NA promoter-TSS (NM_198581) promoter-TSS (NM_198581) 6 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 424.5-9 chr2 171574213 171574530 + 2 NA Intergenic Intergenic 51897 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 286-11 chr2 85180871 85181022 + 2 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) -5463 NR_046797 100874334 Hs.693125 NR_046797 ENSG00000231134 TCF7L1-IT1 - TCF7L1 intronic transcript 1 ncRNA 177-5 chr10 68401284 68401444 + 2 NA intron (NR_103476, intron 3 of 18) intron (NR_103476, intron 3 of 18) 5825 NM_017987 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 349.333-2 chr10 89643971 89644341 + 2 NA promoter-TSS (NM_148978) promoter-TSS (NM_148978) -240 NM_148978 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 355.667-10 chr5 96175246 96175739 + 2 NA intron (NR_130776, intron 1 of 4) L2a|LINE|L2 96354 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 478.5-4 chr14 63039547 63040223 + 2 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 5573 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 551.167-5 chr8 123065556 123066063 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -6898 NM_001363151 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 484.833-2 chr15 91853046 91853571 + 2 NA promoter-TSS (NM_001145044) promoter-TSS (NM_001145044) -400 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 311.667-11 chr2 51238883 51239252 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 206466 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 659.333-2 chr7 45257965 45258746 + 2 NA Intergenic Intergenic 100564 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 294.667-12 chr16 61820369 61820675 + 2 NA intron (NM_001796, intron 6 of 11) LTR16E1|LTR|ERVL 215916 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 202.5-53 chr9 134739308 134739574 + 2 NA intron (NM_001278074, intron 11 of 65) intron (NM_001278074, intron 11 of 65) -86598 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 539.667 chr10 103491914 103492412 + 2 NA intron (NR_120675, intron 3 of 3) intron (NR_120675, intron 3 of 3) -1542 NM_004210 9148 Hs.594708 NM_004210 ENSG00000107954 NEURL1 NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1 neuralized E3 ubiquitin protein ligase 1 protein-coding 220.333-8 chr12 6259211 6259330 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -51166 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 318-20 chr8 110831333 110831556 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 195989 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 359.333-10 chr3 104217278 104217629 + 2 NA Intergenic Intergenic -693337 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 472 chr10 59805305 59805904 + 2 NA intron (NM_005436, intron 6 of 8) intron (NM_005436, intron 6 of 8) -52149 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 350-2 chr1 157697429 157697731 + 2 NA intron (NM_052939, intron 5 of 14) intron (NM_052939, intron 5 of 14) 3189 NR_135214 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 358.333-12 chr8 132120172 132120416 + 2 NA TTS (NM_004519) TTS (NM_004519) -15029 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 186.667-37 chr2 181273891 181274046 + 2 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) 31684 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 618.666 chr12 5348099 5348466 + 2 NA Intergenic Intergenic -83826 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 393-7 chr8 82600958 82601186 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -311032 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 316.5-9 chr14 37245785 37246092 + 2 NA intron (NM_138731, intron 2 of 13) intron (NM_138731, intron 2 of 13) 48001 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 593.833-2 chr2 71460683 71461471 + 2 NA intron (NM_003494, intron 1 of 54) intron (NM_003494, intron 1 of 54) -5622 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 482.333-3 chr8 125212749 125213083 + 2 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 121056 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 684.833-3 chr6 27078841 27079327 + 2 NA Intergenic Intergenic 53712 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 230.667-27 chr8 101145164 101145321 + 2 NA Intergenic Intergenic 60431 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 418.167-2 chr5 58283537 58283931 + 2 NA Intergenic L1MEd|LINE|L1 -161393 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 384.667 chr1 118843429 118843663 + 2 NA Intergenic MIRb|SINE|MIR 144797 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 224.667-45 chr9 134037776 134037901 + 2 NA intron (NM_007371, intron 9 of 11) L1MEf|LINE|L1 12357 NM_001355256 266655 Hs.654869 NM_001355256 ENSG00000235106 BRD3OS LINC00094|LP2477|NCRNA00094 BRD3 opposite strand protein-coding 569.834-2 chr14 77599738 77600263 + 2 NA intron (NM_004863, intron 1 of 11) intron (NM_004863, intron 1 of 11) 16767 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 271.5-12 chr15 89498505 89498687 + 2 NA Intergenic Intergenic -2013 NR_110261 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 391.5-7 chr3 85806951 85807201 + 2 NA intron (NR_046752, intron 1 of 3) intron (NR_046752, intron 1 of 3) 20974 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 445.5 chr1 77166693 77167136 + 2 NA intron (NM_005482, intron 4 of 10) intron (NM_005482, intron 4 of 10) 52516 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 444-3 chr16 11714839 11715217 + 2 NA intron (NM_001303447, intron 5 of 12) AluSx|SINE|Alu 27829 NR_136673 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 320-16 chr5 132899673 132899981 + 2 NA intron (NM_014423, intron 7 of 20) intron (NM_014423, intron 7 of 20) 26159 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 293.5-10 chr16 66633152 66633420 + 2 NA intron (NM_181521, intron 2 of 3) intron (NM_181521, intron 2 of 3) 28555 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 176-12 chr14 73711717 73711810 + 2 NA TTS (NM_006029) TTS (NM_006029) 2621 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 437.334 chr1 8775362 8775676 + 2 NA intron (NM_001042681, intron 1 of 22) AluJr|SINE|Alu 42121 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 331.167-3 chr12 1288465 1288759 + 2 NA intron (NR_027948, intron 14 of 19) intron (NR_027948, intron 14 of 19) -211879 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 178.667-16 chr17 29243436 29243641 + 2 NA Intergenic L1ME4b|LINE|L1 -3319 NM_005208 1411 Hs.46275 NM_005208 ENSG00000108255 CRYBA1 CRYB1|CTRCT10 crystallin beta A1 protein-coding 530.667-6 chr8 123462772 123463437 + 2 NA Intergenic L1MC4|LINE|L1 46330 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 646.833-3 chr2 19349776 19350269 + 2 NA Intergenic Intergenic 1593 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 480.333 chr12 53984933 53985560 + 2 NA promoter-TSS (NM_017409) promoter-TSS (NM_017409) 100 NM_017409 3226 Hs.44276 NM_017409 ENSG00000180818 HOXC10 HOX3I homeobox C10 protein-coding 259.167-14 chr6 69813517 69813680 + 2 NA Intergenic LTR33|LTR|ERVL -16588 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 507.667-2 chr15 86688442 86688778 + 2 NA intron (NM_152336, intron 23 of 24) L3|LINE|CR1 -244270 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 842.667 chr7 108612738 108613574 + 2 NA Intergenic Intergenic 43282 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 387 chr10 54786650 54786954 + 2 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 14429 NM_033056 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 416.333 chr10 60032912 60033415 + 2 NA intron (NM_001204403, intron 43 of 43) intron (NM_001204403, intron 43 of 43) -72250 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 252-15 chr11 97587558 97587758 + 2 NA Intergenic L1ME3|LINE|L1 1079233 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 605-3 chr19 32580653 32581124 + 2 NA promoter-TSS (NM_004708) promoter-TSS (NM_004708) -302 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 485 chr11 75820030 75820493 + 2 NA intron (NM_003369, intron 1 of 14) AluJr4|SINE|Alu 5051 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 234.333-29 chr4 62343522 62343693 + 2 NA Intergenic L1MEf|LINE|L1 -181842 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 341.167-3 chr10 13764759 13764990 + 2 NA intron (NM_001318336, intron 5 of 23) MIR3|SINE|MIR -57307 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 261.833-3 chr11 31140840 31141101 + 2 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) -148284 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 241.5-11 chr21 42496301 42496479 + 2 NA promoter-TSS (NM_001286506) promoter-TSS (NM_001286506) -149 NR_135518 101930094 Hs.670903 NR_135518 ENSG00000239930 LOC101930094 - uncharacterized LOC101930094 ncRNA 405-3 chr10 5752601 5753065 + 2 NA intron (NM_017782, intron 15 of 20) intron (NM_017782, intron 15 of 20) 60601 NM_001494 2665 Hs.299055 NM_001494 ENSG00000057608 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 330-10 chr18 20971810 20972016 + 2 NA intron (NM_005406, intron 22 of 32) L2a|LINE|L2 139900 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 395.5-4 chr3 157266789 157266989 + 2 NA intron (NM_024621, intron 12 of 13) intron (NM_024621, intron 12 of 13) -106129 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 212-26 chr2 76891556 76891734 + 2 NA intron (NR_146416, intron 1 of 1) L1M4|LINE|L1 -94320 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 214-7 chr11 65135135 65135437 + 2 NA promoter-TSS (NM_032431) promoter-TSS (NM_032431) -767 NM_032431 84447 Hs.75859 NM_032431 ENSG00000162298 SYVN1 DER3|HRD1 synoviolin 1 protein-coding 465.333-5 chr3 145680647 145681112 + 2 NA Intergenic Intergenic 388306 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 258.5-18 chr2 176259950 176260279 + 2 NA Intergenic Intergenic -9328 NM_001319098 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 464.834-3 chr5 131628766 131629297 + 2 NA intron (NM_016340, intron 1 of 27) Tigger1|DNA|TcMar-Tigger 6198 NM_016340 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 311.5-13 chr4 23858907 23859105 + 2 NA intron (NM_001330752, intron 3 of 13) A-rich|Low_complexity|Low_complexity 22286 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 254-22 chr7 27346984 27347175 + 2 NA Intergenic Intergenic -99850 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 280.5-24 chr9 92951160 92951357 + 2 NA intron (NM_001083536, intron 1 of 17) intron (NM_001083536, intron 1 of 17) 3735 NM_001083536 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 174.167-30 chr3 156507393 156507508 + 2 NA intron (NM_172159, intron 8 of 13) intron (NM_172159, intron 8 of 13) 46675 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 280-14 chr2 57358833 57358995 + 2 NA Intergenic Intergenic -548737 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 426.833-2 chr18 56702690 56703070 + 2 NA intron (NM_015285, intron 12 of 27) (TATTTAC)n|Simple_repeat|Simple_repeat 51495 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 310.833 chr1 84178943 84179119 + 2 NA intron (NM_001300915, intron 4 of 11) intron (NM_001300915, intron 4 of 11) -2601 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 190-11 chr11 29848472 29848645 + 2 NA Intergenic L1MB1|LINE|L1 133835 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 186.666-7 chr5 66167246 66167409 + 2 NA intron (NM_139168, intron 8 of 12) intron (NM_139168, intron 8 of 12) 22492 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 596 chr1 20152100 20152886 + 2 NA Intergenic Intergenic 13170 NM_001360869 64600 Hs.302034 NM_022819 ENSG00000158786 PLA2G2F GIIFsPLA2|sPLA2-IIF phospholipase A2 group IIF protein-coding 372.667-13 chr9 33374765 33375408 + 2 NA Intergenic Intergenic 27482 NM_001170 364 Hs.455323 NM_001170 ENSG00000165269 AQP7 AQP7L|AQPap|GLYCQTL aquaporin 7 protein-coding 314.833-6 chr15 98149850 98150077 + 2 NA Intergenic L1ME3D|LINE|L1 -61210 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 223-39 chr6 34911142 34911285 + 2 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 21958 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 592.167-2 chr16 87316968 87317467 + 2 NA promoter-TSS (NR_135180) promoter-TSS (NR_135180) 175 NM_001195124 100506581 Hs.729380 NM_001195124 ENSG00000260456 C16orf95 - chromosome 16 open reading frame 95 protein-coding 411.333 chr1 174257705 174258226 + 2 NA intron (NM_001366445, intron 7 of 13) Kanga2_a|DNA|TcMar-Tc2 -17135 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 421 chr10 64742902 64743229 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -82463 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 374.667-11 chr6 124292757 124293025 + 2 NA intron (NM_001040214, intron 2 of 6) L4_A_Mam|LINE|RTE-X 9886 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 354-6 chr15 90992827 90993007 + 2 NA intron (NM_199413, intron 1 of 13) intron (NM_199413, intron 1 of 13) 1618 NM_001267580 9055 Hs.366401 NM_003981 ENSG00000198901 PRC1 ASE1 protein regulator of cytokinesis 1 protein-coding 326.834-5 chr2 122258907 122259236 + 2 NA Intergenic Intergenic 503420 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 326.834 chr11 3217123 3217754 + 2 NA promoter-TSS (NR_027138) promoter-TSS (NR_027138) -894 NR_027138 283303 Hs.151154 NM_173590 ENSG00000236301 MRGPRG-AS1 C11orf36|HSD-40 MRGPRG antisense RNA 1 ncRNA 802.333 chr6 158025934 158026815 + 2 NA intron (NM_003898, intron 2 of 26) MIR|SINE|MIR 9281 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 476.167-4 chr6 37483736 37484413 + 2 NA intron (NM_138493, intron 3 of 3) intron (NM_138493, intron 3 of 3) 15819 NM_138493 154467 Hs.284207 NM_138493 ENSG00000198937 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 345.333-8 chr5 61083651 61083970 + 2 NA intron (NM_174889, intron 2 of 3) L1ME1|LINE|L1 -78506 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 311.5-16 chr5 11044576 11044864 + 2 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -283486 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 170-56 chr9 22103496 22103648 + 2 NA intron (NR_003529, intron 14 of 18) intron (NR_003529, intron 14 of 18) -94259 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 374.834-2 chr20 41135157 41135958 + 2 NA intron (NR_109889, intron 2 of 6) intron (NR_109889, intron 2 of 6) -1986 NM_182811 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 233.667-26 chr5 146283565 146283978 + 2 NA intron (NM_018989, intron 19 of 20) intron (NM_018989, intron 19 of 20) -55068 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 292-25 chr8 100573976 100574221 + 2 NA intron (NM_152628, intron 13 of 13) intron (NM_152628, intron 13 of 13) -14339 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 534.167-3 chr3 2144986 2145383 + 2 NA promoter-TSS (NR_046555) promoter-TSS (NR_046555) -943 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 372.333-5 chr16 55258092 55258396 + 2 NA Intergenic Intergenic -66315 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 282-19 chr20 39346709 39346938 + 2 NA Intergenic L1ME3|LINE|L1 -122075 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 337.833-9 chr5 151660667 151660975 + 2 NA TTS (NM_003118) TTS (NM_003118) -16124 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CLMAT3 CTB-113P19.1|SPARC-AS1 colorectal liver metastasis associated transcript 3 ncRNA 388.167-6 chr6 5143256 5143887 + 2 NA intron (NM_001318782, intron 2 of 3) intron (NM_001318782, intron 2 of 3) 4751 NR_037462 100500900 NR_037462 ENSG00000265083 MIR3691 mir-3691 microRNA 3691 ncRNA 423.667-2 chr11 130213027 130213446 + 2 NA Intergenic Intergenic 53454 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 432.667-3 chr12 46787073 46787348 + 2 NA intron (NM_018018, intron 5 of 16) L2b|LINE|L2 38787 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 321.167-13 chr2 237923493 237923783 + 2 NA Intergenic Intergenic -43307 NM_080678 140739 Hs.471785 NM_080678 ENSG00000184182 UBE2F NCE2 ubiquitin conjugating enzyme E2 F (putative) protein-coding 366.501 chr8 118107753 118108063 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 3911 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 575.167-3 chr9 29264535 29264862 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -51097 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 784.166 chr20 50588109 50588741 + 2 NA intron (NM_001290268, intron 20 of 21) intron (NM_001290268, intron 20 of 21) 2639 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 313-9 chr5 164468092 164468410 + 2 NA promoter-TSS (NR_105064) promoter-TSS (NR_105064) -849 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 337.5-3 chr11 36076859 36077088 + 2 NA intron (NR_135064, intron 1 of 1) L1MC4a|LINE|L1 928 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 310-32 chrX 46796561 46796814 + 2 NA Intergenic Intergenic -37569 NM_032591 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 414-7 chr6 64915632 64915918 + 2 NA intron (NM_001292009, intron 15 of 43) MIRc|SINE|MIR -385643 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 562-4 chr9 131052974 131053710 + 2 NA intron (NM_006059, intron 11 of 27) intron (NM_006059, intron 11 of 27) -43134 NM_001185096 83543 Hs.4944 NM_031426 ENSG00000126878 AIF1L C9orf58|IBA2 allograft inflammatory factor 1 like protein-coding 478.5-5 chr17 68204879 68205670 + 2 NA promoter-TSS (NM_001346481) promoter-TSS (NM_001346481) -855 NM_001346473 51321 Hs.293560 NM_016627 ENSG00000196704 AMZ2 - archaelysin family metallopeptidase 2 protein-coding 196-39 chr6 44664770 44664880 + 2 NA Intergenic Intergenic -112944 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 203-19 chr2 163404183 163404333 + 2 NA Intergenic Intergenic 331750 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 364-10 chr3 189437416 189437773 + 2 NA Intergenic L1PB4|LINE|L1 -159152 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 492-3 chr3 117019045 117019323 + 2 NA Intergenic Intergenic 97753 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 977.334 chr12 79547357 79548297 + 2 NA Intergenic Intergenic 128570 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 595.667 chr1 36553537 36554075 + 2 NA Intergenic Intergenic -70492 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 247.667-33 chr7 34734415 34734839 + 2 NA intron (NR_015356, intron 2 of 4) intron (NR_015356, intron 2 of 4) 23645 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 269.667-13 chr2 69833637 69833779 + 2 NA intron (NM_178439, intron 1 of 13) intron (NM_178439, intron 1 of 13) 4048 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 612.667-3 chr8 86084733 86085278 + 2 NA Intergenic Intergenic -13905 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 413-13 chr8 118085703 118086018 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 25959 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 241-29 chr6 634613 634733 + 2 NA intron (NM_018303, intron 2 of 27) intron (NM_018303, intron 2 of 27) 22291 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 576-4 chr9 132574938 132575475 + 2 NA Intergenic Intergenic -7400 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 245.333-15 chr19 11700134 11700369 + 2 NA Intergenic Intergenic 26253 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 438.333-3 chr12 22443515 22444039 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy 100420 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 444.334-3 chr3 137996296 137996756 + 2 NA Intergenic L1MEd|LINE|L1 -2290 NM_001002026 51208 Hs.655324 NM_016369 ENSG00000066405 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 679.666 chr2 222709198 222709712 + 2 NA intron (NM_058165, intron 5 of 5) intron (NM_058165, intron 5 of 5) 37797 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 512.5-2 chr3 177816880 177817179 + 2 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 164 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 284.666-2 chr2 27654307 27654532 + 2 NA intron (NM_014860, intron 5 of 5) intron (NM_014860, intron 5 of 5) -9052 NM_018158 22950 Hs.306000 NM_018158 ENSG00000163798 SLC4A1AP HLC3 solute carrier family 4 member 1 adaptor protein protein-coding 382.667-5 chr11 65502933 65503148 + 2 NA non-coding (NR_145459, exon 1 of 1) non-coding (NR_145459, exon 1 of 1) -3077 NR_144569 109136578 NR_144569 ENSG00000274072 MASCRNA - MALAT1-associated small cytoplasmic RNA scRNA 310-25 chr6 127648889 127649188 + 2 NA Intergenic L1MA4|LINE|L1 71864 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 332.666-2 chr7 87889711 87890055 + 2 NA intron (NM_001318061, intron 6 of 11) intron (NM_001318061, intron 6 of 11) 13390 NM_001318060 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 431-8 chr19 29260322 29261235 + 2 NA Intergenic Intergenic -47627 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 392.333-5 chr5 134145986 134146301 + 2 NA 3' UTR (NM_001134851, exon 9 of 9) 3' UTR (NM_001134851, exon 9 of 9) 22525 NM_001366502 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 protein-coding 274-21 chr3 63050427 63050742 + 2 NA Intergenic Intergenic -52104 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 603.834 chr22 50691117 50691922 + 2 NA intron (NM_033517, intron 9 of 21).2 L1MB5|LINE|L1 16877 NM_033517 85358 Hs.149035 NM_033517 ENSG00000251322 SHANK3 DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2 SH3 and multiple ankyrin repeat domains 3 protein-coding 206.667-25 chr2 41859222 41859380 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -18254 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 426-5 chr14 43552078 43552419 + 2 NA Intergenic Intergenic 955035 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 365.5-9 chr2 4054301 4054519 + 2 NA Intergenic Intergenic 80249 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 314.833-5 chr15 89171700 89172049 + 2 NA intron (NM_007011, intron 9 of 14) MER5B|DNA|hAT-Charlie 49705 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 252.5-13 chr2 106053246 106053598 + 2 NA Intergenic Intergenic -12266 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 387.167-7 chr4 167357404 167357800 + 2 NA Intergenic L1M2|LINE|L1 -123012 NM_001204352 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 214-43 chr5 3241133 3241250 + 2 NA Intergenic L1MC1|LINE|L1 63356 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 383.833-5 chr2 19224792 19225030 + 2 NA Intergenic Intergenic -123518 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 262.333-8 chr12 125610122 125610365 + 2 NA intron (NM_052907, intron 5 of 8) L1MB7|LINE|L1 -12209 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 713.667-2 chr4 183472138 183472838 + 2 NA Intergenic L2a|LINE|L2 27852 NM_017632 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 392-6 chr3 43546262 43546518 + 2 NA intron (NM_001346464, intron 12 of 13) L1M3|LINE|L1 75536 NM_001346467 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 568.167-3 chr8 95519198 95519648 + 2 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -250222 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 267-15 chr14 69263478 69263628 + 2 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 3395 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 351.834-2 chr5 151503072 151503392 + 2 NA TTS (NM_001447) TTS (NM_001447) 18916 NR_106752 102465246 NR_106752 ENSG00000276622 MIR6499 hsa-mir-6499|mir-6499 microRNA 6499 ncRNA 186.667-42 chr3 82395581 82395750 + 2 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 409523 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 195.667-24 chr2 125146506 125146665 + 2 NA Intergenic Intergenic 971400 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 465.501 chr1 242467329 242467674 + 2 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) -18019 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 431.834-3 chr7 31056496 31056874 + 2 NA intron (NM_001199637, intron 1 of 13) intron (NM_001199637, intron 1 of 13) 4224 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 575.5 chr10 123043011 123043542 + 2 NA intron (NM_001609, intron 6 of 10) intron (NM_001609, intron 6 of 10) 34270 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 624.666 chr16 66483451 66484153 + 2 NA TTS (NM_001178020) TTS (NM_001178020) -7400 NR_109960 101927726 Hs.739193 NR_109960 ENSG00000261656 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 620.667-3 chr6 61269473 61270000 + 2 NA Intergenic Intergenic -304394 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 347.5-12 chr5 39009857 39010196 + 2 NA intron (NM_001285439, intron 3 of 38) THE1C|LTR|ERVL-MaLR 64373 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 646.167 chr2 111116788 111117342 + 2 NA intron (NM_001142807, intron 17 of 17) intron (NM_001142807, intron 17 of 17) -1477 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 229-12 chr2 179711097 179711327 + 2 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 34454 NM_001352813 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 763.833 chr12 96400645 96401360 + 2 NA promoter-TSS (NM_001170464) promoter-TSS (NM_001170464) -563 NM_002595 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 267.5-19 chr19 34639326 34639889 + 2 NA intron (NR_027620, intron 1 of 3) intron (NR_027620, intron 1 of 3) -6266 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 292-7 chr12 14077503 14077688 + 2 NA Intergenic L1M3de|LINE|L1 -97239 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 559.333-4 chr4 38319796 38320231 + 2 NA Intergenic Intergenic -46901 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 673.833-2 chr18 2985578 2986305 + 2 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 26006 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 206.167-14 chr2 118202652 118202937 + 2 NA Intergenic Intergenic -16408 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 351.333-15 chrX 96770259 96770584 + 2 NA intron (NM_007309, intron 4 of 26) intron (NM_007309, intron 4 of 26) 85579 NM_006729 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 257.5-31 chr8 36422170 36422399 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -362090 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 314.5-10 chr18 35854097 35854313 + 2 NA Intergenic Intergenic 50721 NR_029616 406963 NR_029616 ENSG00000207797 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 216-5 chr10 95865354 95865504 + 2 NA intron (NM_001320916, intron 9 of 9) intron (NM_001320916, intron 9 of 9) -42536 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 259.667-17 chr6 50142656 50143226 + 2 NA Intergenic Intergenic -93012 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 484-6 chr9 86288828 86289132 + 2 NA intron (NM_001185059, intron 26 of 26) intron (NM_001185059, intron 26 of 26) -6442 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|MMDS5|hIscA iron-sulfur cluster assembly 1 protein-coding 248-20 chr17 6148593 6148792 + 2 NA Intergenic Intergenic 78078 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 291-5 chr10 53995140 53995349 + 2 NA 3' UTR (NM_001354430, exon 21 of 21) 3' UTR (NM_001354430, exon 21 of 21) -490986 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 784.334-2 chr9 94013882 94014644 + 2 NA Intergenic Intergenic -16550 NM_001253830 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 313.834-3 chr22 35430523 35431096 + 2 NA Intergenic AluSx3|SINE|Alu 30669 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|MGORS8|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 367.333-6 chr4 36982638 36983006 + 2 NA Intergenic Intergenic -18957 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 307.5-2 chr1 27112183 27112446 + 2 NA intron (NR_046474, intron 1 of 10) intron (NR_046474, intron 1 of 10) 42811 NM_003047 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 469.167-2 chr4 31373700 31374222 + 2 NA Intergenic L1MC1|LINE|L1 -132583 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 312.334-2 chr13 97452119 97452342 + 2 NA intron (NM_021033, intron 1 of 1) L1ME3|LINE|L1 18061 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 310.5 chr1 170158699 170158867 + 2 NA intron (NM_001136107, intron 1 of 3) L1M6B|LINE|L1 -7321 NR_036064 100422839 NR_036064 ENSG00000283340 MIR3119-1 - microRNA 3119-1 ncRNA 373.166-4 chr2 185914749 185915062 + 2 NA Intergenic L2a|LINE|L2 -114754 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 304-3 chr10 18308357 18308593 + 2 NA intron (NM_000724, intron 1 of 12) L1PA15|LINE|L1 -32234 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 363-7 chr6 55868689 55869221 + 2 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 6635 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 677.833-2 chr17 7745865 7746598 + 2 NA intron (NM_020877, intron 12 of 85) L1ME4b|LINE|L1 -8089 NR_002778 118432 Hs.658086 NR_002778 ENSG00000240480 RPL29P2 RPL29_10_1510 ribosomal protein L29 pseudogene 2 pseudo 311.667-16 chr5 149452250 149452538 + 2 NA Intergenic Intergenic 21748 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 222.333-15 chr2 59036262 59036383 + 2 NA intron (NR_033873, intron 12 of 13) MIRb|SINE|MIR -181386 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 172.833-26 chr6 26341723 26341838 + 2 NA Intergenic Intergenic -23379 NM_001197248 11118 Hs.376046 NM_007047 ENSG00000186470 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin subfamily 3 member A2 protein-coding 270.5-3 chr1 62597771 62597949 + 2 NA exon (NM_014495, exon 1 of 7) exon (NM_014495, exon 1 of 7) 340 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 872.833 chr10 88687815 88688607 + 2 NA Intergenic Intergenic 23769 NM_004190 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 501.667-3 chr2 85637340 85638021 + 2 NA intron (NR_046347, intron 8 of 12) intron (NR_046347, intron 8 of 12) 21494 NM_001256726 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 621 chr14 100663244 100663855 + 2 NA intron (NR_024096, intron 1 of 1) MER33|DNA|hAT-Charlie 6281 NR_024096 283601 Hs.379802 NM_001007560 ENSG00000196273 LINC00523 C14orf70 long intergenic non-protein coding RNA 523 ncRNA 173.834 chr1 235280026 235280181 + 2 NA intron (NR_135074, intron 2 of 24) MER68|LTR|ERVL 47384 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 351.333-12 chr5 151051779 151052034 + 2 NA intron (NM_001258454, intron 7 of 17) intron (NM_001258454, intron 7 of 17) 13225 NM_001258455 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 412.667-11 chrX 153586367 153586826 + 2 NA Intergenic L1M2|LINE|L1 12543 NM_001130997 92002 Hs.496943 NM_152274 ENSG00000262919 CCNQ FAM58A cyclin Q protein-coding 540.666-5 chr5 46308446 46308875 + 2 NA Intergenic ALR/Alpha|Satellite|centr -612280 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 668.167 chr17 75600925 75601920 + 2 NA intron (NM_001309242, intron 13 of 62) intron (NM_001309242, intron 13 of 62) 13364 NM_001309242 80022 Hs.390817 NM_001080847 ENSG00000266714 MYO15B MYO15BP myosin XVB protein-coding 455.668 chr5 173591745 173592510 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy 12493 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 203.333-60 chr8 77342477 77342643 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -108137 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 170-12 chr11 106022275 106022489 + 2 NA promoter-TSS (NM_032424) promoter-TSS (NM_032424) -95 NM_001318750 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 565.167-3 chr20 51624367 51624836 + 2 NA intron (NM_006045, intron 18 of 27) intron (NM_006045, intron 18 of 27) -61762 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 305.5-3 chr1 152451294 152451670 + 2 NA Intergenic Intergenic -37219 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 402.334-6 chr8 81240982 81241304 + 2 NA Intergenic Intergenic -39393 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 394.334-2 chr11 123103053 123103607 + 2 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) -41194 NM_006597 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 471.001 chr1 74694214 74694650 + 2 NA Intergenic Intergenic -20640 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 615.667 chr10 114505232 114505639 + 2 NA intron (NM_001352440, intron 6 of 20) intron (NM_001352440, intron 6 of 20) 21478 NM_006720 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 564.667 chr7 77940427 77940839 + 2 NA TTS (NM_001366088) TTS (NM_001366088) 100503 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 480 chr1 37692027 37692551 + 2 NA promoter-TSS (NM_001350759) promoter-TSS (NM_001350759) -47 NM_001350768 54955 Hs.272673 NM_017850 ENSG00000116922 C1orf109 - chromosome 1 open reading frame 109 protein-coding 206-25 chr20 5338337 5338500 + 2 NA Intergenic L1MB3|LINE|L1 -21686 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 403 chr11 13872786 13873081 + 2 NA Intergenic Intergenic -2317 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 764.834 chr1 47695885 47696802 + 2 NA Intergenic MIR|SINE|MIR -259026 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 292-5 chr10 128554479 128554673 + 2 NA Intergenic MER66C|LTR|ERV1 268626 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 406.333-5 chr20 9467798 9468208 + 2 NA intron (NM_000933, intron 31 of 35) intron (NM_000933, intron 31 of 35) -46355 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 377.834-5 chr8 25269660 25269979 + 2 NA intron (NM_024940, intron 3 of 51) intron (NM_024940, intron 3 of 51) -75583 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 381.5-3 chr17 9728954 9729556 + 2 NA 3' UTR (NM_153210, exon 15 of 15) 3' UTR (NM_153210, exon 15 of 15) 62337 NM_001220493 201140 Hs.61684 NM_001105571 ENSG00000184544 DHRS7C SDR32C2 dehydrogenase/reductase 7C protein-coding 670.5-3 chr4 145954984 145955616 + 2 NA Intergenic Intergenic -16477 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 561.334 chr2 6828223 6828775 + 2 NA TTS (NR_126359) TTS (NR_126359) 11965 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 270.833-4 chr11 112107174 112107436 + 2 NA Intergenic L1MEd|LINE|L1 20432 NR_077060 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 210.833-3 chr10 60114796 60114908 + 2 NA intron (NM_001204403, intron 26 of 43) L1MEg1|LINE|L1 26164 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 208.667-10 chr11 131694957 131695062 + 2 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -31453 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 342.833-7 chr16 67668015 67668365 + 2 NA intron (NM_001012984, intron 3 of 3) intron (NM_001012984, intron 3 of 3) 1376 NM_001012984 388284 Hs.632208 NM_001012984 ENSG00000159761 C16orf86 - chromosome 16 open reading frame 86 protein-coding 434-10 chr5 2809861 2810301 + 2 NA Intergenic Intergenic 57950 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 630.333-2 chr11 117843789 117844392 + 2 NA intron (NM_001164831, intron 1 of 7) intron (NM_001164831, intron 1 of 7) -16001 NM_021603 486 Hs.731865 NM_001680 ENSG00000137731 FXYD2 ATP1G1|HOMG2 FXYD domain containing ion transport regulator 2 protein-coding 369.333-5 chr5 111505655 111506364 + 2 NA intron (NM_001308059, intron 3 of 6) AluSg4|SINE|Alu -6217 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 535.5 chr19 46600584 46601162 + 2 NA promoter-TSS (NM_001370551) promoter-TSS (NM_001370551) 43 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 296.834-10 chrX 50225307 50225567 + 2 NA intron (NM_033031, intron 1 of 12) L2a|LINE|L2 20672 NM_033031 85417 Hs.130310 NM_033031 ENSG00000147082 CCNB3 - cyclin B3 protein-coding 873.167 chr3 8417128 8417780 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 84204 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 361.667-8 chr14 49028329 49028608 + 2 NA Intergenic L1ME2|LINE|L1 557912 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 508.666 chr1 181676401 181676856 + 2 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 193111 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 455.5 chr10 30538098 30538492 + 2 NA Intergenic Intergenic 91458 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 400.667-10 chr8 91626110 91626337 + 2 NA Intergenic MIRb|SINE|MIR 376904 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 327.333-12 chr8 128127140 128127534 + 2 NA Intergenic Intergenic -22779 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 341.666-4 chr2 22387023 22387379 + 2 NA Intergenic AluSc|SINE|Alu -149278 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 188-8 chr11 119334294 119334393 + 2 NA promoter-TSS (NM_032015) promoter-TSS (NM_032015) -184 NM_032015 79102 Hs.524084 NM_032015 ENSG00000173456 RNF26 - ring finger protein 26 protein-coding 250.667-5 chr11 9139059 9139259 + 2 NA non-coding (NR_145966, exon 22 of 22) non-coding (NR_145966, exon 22 of 22) 44796 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 485.667-7 chr3 72822493 72822866 + 2 NA intron (NM_018130, intron 6 of 10) intron (NM_018130, intron 6 of 10) 25766 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 466.5-4 chr15 95559935 95560210 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger 126979 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 325-9 chr20 43337328 43337674 + 2 NA Intergenic Intergenic -120395 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 348.499 chr5 139633243 139633491 + 2 NA Intergenic Intergenic -13932 NM_001317201 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 246.166-3 chr2 120996400 120996600 + 2 NA Intergenic AluJo|SINE|Alu 204219 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 223-22 chr2 50664004 50664170 + 2 NA intron (NM_001330093, intron 4 of 22) L2a|LINE|L2 32175 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 716.668-2 chr9 93827214 93827844 + 2 NA Intergenic Intergenic 8172 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 192.667-7 chr12 3823514 3823623 + 2 NA intron (NM_020367, intron 4 of 7) L1ME4b|LINE|L1 49831 NR_104461 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 174.5-32 chr6 97462133 97462326 + 2 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 156643 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 501-6 chr7 46883211 46883608 + 2 NA Intergenic Intergenic -186287 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 579.5 chr16 57519912 57520370 + 2 NA intron (NM_033212, intron 4 of 8) intron (NM_033212, intron 4 of 8) 16430 NM_033212 92922 Hs.644611 NM_033212 ENSG00000135736 CCDC102A - coiled-coil domain containing 102A protein-coding 345.5-19 chr7 45436173 45436394 + 2 NA Intergenic L1MEf|LINE|L1 -137857 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 286.5-5 chr16 55367364 55367543 + 2 NA Intergenic Intergenic 42894 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 373.333-8 chr18 5426627 5426878 + 2 NA intron (NM_001281535, intron 11 of 21) L2c|LINE|L2 113804 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 384 chr1 98209720 98210006 + 2 NA promoter-TSS (NR_046088) promoter-TSS (NR_046088) -848 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 560.167-4 chr9 127943339 127944052 + 2 NA intron (NM_001035254, intron 10 of 10) intron (NM_001035254, intron 10 of 10) -5211 NM_003863 8818 Hs.108973 NM_003863 ENSG00000136908 DPM2 CDG1U dolichyl-phosphate mannosyltransferase subunit 2, regulatory protein-coding 260-7 chr13 63672552 63672771 + 2 NA intron (NR_047011, intron 3 of 3) intron (NR_047011, intron 3 of 3) -64774 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 390-3 chr13 85059727 85060083 + 2 NA Intergenic Intergenic 88152 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 199.167-17 chr20 49699397 49699684 + 2 NA intron (NM_004776, intron 1 of 8) MER44B|DNA|TcMar-Tigger 14338 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 229.5-33 chr5 111373094 111373311 + 2 NA intron (NM_001323376, intron 2 of 8) intron (NM_001323376, intron 2 of 8) -139024 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 507.666 chr20 55161109 55161639 + 2 NA Intergenic L2c|LINE|L2 -261669 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 407.834-6 chr22 26894957 26895352 + 2 NA Intergenic Intergenic -8138 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 271.5-14 chr17 70535641 70535888 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 366229 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 675.667-4 chr19 35998946 35999436 + 2 NA Intergenic LTR16E1|LTR|ERVL 4003 NM_001042631 644096 Hs.356460 NM_001042631 ENSG00000205138 SDHAF1 LYRM8 succinate dehydrogenase complex assembly factor 1 protein-coding 623.166 chr5 172697579 172698362 + 2 NA Intergenic Intergenic 35805 NR_049799 100847029 NR_049799 ENSG00000265160 MIR5003 - microRNA 5003 ncRNA 358.666-8 chr6 123329322 123329562 + 2 NA intron (NM_006073, intron 23 of 40) intron (NM_006073, intron 23 of 40) -110162 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 353.167-6 chr3 98351621 98352012 + 2 NA Intergenic Intergenic -2038 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 239.333-6 chr14 60228879 60229049 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -16786 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 570.167-2 chr9 95131305 95131845 + 2 NA intron (NM_001243744, intron 8 of 13) intron (NM_001243744, intron 8 of 13) -45481 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 386-3 chr17 9522303 9522508 + 2 NA intron (NR_033656, intron 2 of 5) L1MA5|LINE|L1 53415 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 664.667-4 chr16 87394086 87394979 + 2 NA intron (NM_022818, intron 1 of 3) MIR3|SINE|MIR 2196 NM_022818 81631 Hs.356061 NM_022818 ENSG00000140941 MAP1LC3B ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a microtubule associated protein 1 light chain 3 beta protein-coding 356-15 chr3 150590723 150591033 + 2 NA Intergenic Intergenic -12443 NM_016275 51714 Hs.369052 NM_016275 ENSG00000198843 SELENOT SELT selenoprotein T protein-coding 343-2 chr10 58153456 58153682 + 2 NA Intergenic Intergenic 114325 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 693.667 chr14 72905711 72906657 + 2 NA Intergenic AluSx|SINE|Alu -12068 NM_001280542 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 411.833-7 chrX 152636095 152636384 + 2 NA Intergenic MIR3|SINE|MIR -1656 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 234-35 chr7 81312411 81312635 + 2 NA Intergenic Intergenic 249296 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 486.833-2 chr12 55132571 55133026 + 2 NA Intergenic L1MC|LINE|L1 3029 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 195.333-27 chr7 19056299 19056405 + 2 NA Intergenic Intergenic 61284 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 1003.5-3 chr6 36758967 36759769 + 2 NA intron (NM_020939, intron 12 of 20) intron (NM_020939, intron 12 of 20) -1959 NM_001314018 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 587.001 chr12 56513491 56513959 + 2 NA TTS (NR_132789) TTS (NR_132789) 860 NR_132789 106635541 NR_132789 SNORA105C - small nucleolar RNA, H/ACA box 105C snoRNA 510.667-7 chr8 117039916 117040495 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) 89230 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 181.333 chr1 188926559 188926711 + 2 NA Intergenic L1ME3A|LINE|L1 1483007 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 398-6 chr14 101703869 101704161 + 2 NA Intergenic L1MEg|LINE|L1 -26422 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 427.833-3 chr16 86044134 86044662 + 2 NA Intergenic Intergenic 126051 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 244.5-9 chr14 60353813 60353980 + 2 NA Intergenic Intergenic 30700 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 229.167-9 chr11 17948095 17948254 + 2 NA intron (NR_104040, intron 9 of 11) AluSz6|SINE|Alu 64873 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 553 chr1 73995254 73995619 + 2 NA Intergenic Intergenic 202740 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 363.667-4 chr14 35883574 35883928 + 2 NA Intergenic Intergenic 57413 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 353.333-12 chr5 92688005 92688210 + 2 NA Intergenic Intergenic 883236 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 396.5 chr1 168051569 168052030 + 2 NA intron (NM_001198956, intron 17 of 21) intron (NM_001198956, intron 17 of 21) 53139 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 400.833-2 chr20 62907536 62907757 + 2 NA intron (NM_022105, intron 4 of 5) MLT1E1A|LTR|ERVL-MaLR 18859 NM_001193370 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 201.167-25 chr5 105390564 105390761 + 2 NA Intergenic L1MEc|LINE|L1 291188 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 372.167-6 chr4 77627095 77627405 + 2 NA Intergenic AluJr|SINE|Alu 115497 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 174.667-14 chr13 65474777 65474931 + 2 NA Intergenic L1PA16|LINE|L1 -391193 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 216-18 chr15 82772425 82772634 + 2 NA intron (NM_001007122, intron 6 of 12) intron (NM_001007122, intron 6 of 12) 16584 NR_003011 677778 Hs.743895 NR_003011 ENSG00000277864 SCARNA15 ACA45 small Cajal body-specific RNA 15 ncRNA 490.001 chr1 167400785 167401422 + 2 NA intron (NM_001198783, intron 12 of 15) intron (NM_001198783, intron 12 of 15) 72033 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 473.833 chr4 74671245 74671606 + 2 NA Intergenic Intergenic 123098 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 383.667-9 chr6 18122777 18123024 + 2 NA promoter-TSS (NM_198586) promoter-TSS (NM_198586) -223 NM_198586 378884 Hs.348351 NM_198586 ENSG00000187566 NHLRC1 EPM2A|EPM2B|MALIN|bA204B7.2 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding 503 chr10 90418962 90419337 + 2 NA intron (NR_110657, intron 3 of 6) Tigger3b|DNA|TcMar-Tigger 121656 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 345-20 chr4 174154423 174154696 + 2 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 65839 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 541.833-5 chr2 128335486 128336065 + 2 NA Intergenic L1ME2|LINE|L1 -16907 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 202.167-14 chr15 57542357 57542618 + 2 NA intron (NM_032866, intron 14 of 18) intron (NM_032866, intron 14 of 18) -49417 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 332-21 chr4 151743578 151743744 + 2 NA intron (NM_001363341, intron 2 of 11) MIR3|SINE|MIR 17346 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 692.333 chr14 22391315 22392174 + 2 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) 41009 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 367-27 chr8 101099523 101099803 + 2 NA Intergenic L2a|LINE|L2 47609 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 294.5-15 chr2 44291256 44291532 + 2 NA intron (NM_000341, intron 4 of 9) intron (NM_000341, intron 4 of 9) 15914 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 291.833-14 chr8 120465163 120465440 + 2 NA intron (NM_022045, intron 10 of 21) MIRb|SINE|MIR 19882 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 214.333-18 chr18 48112060 48112200 + 2 NA intron (NM_001371291, intron 4 of 6) L1ME4a|LINE|L1 25018 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 372.5-13 chr5 110325370 110325812 + 2 NA Intergenic Intergenic 188324 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 526 chr13 101155498 101156043 + 2 NA intron (NM_001350749, intron 15 of 43) L1MD3|LINE|L1 -211406 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 253.333-34 chr6 160101052 160101223 + 2 NA intron (NM_000876, intron 45 of 47) L1MEd|LINE|L1 8055 NR_003288 729603 Hs.674810 NR_003288 ENSG00000213073 LOC729603 - calcineurin like EF-hand protein 1 pseudogene pseudo 320-20 chr8 91805729 91806046 + 2 NA Intergenic Intergenic 211793 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 315-11 chr3 38117966 38118362 + 2 NA intron (NM_007335, intron 33 of 36) intron (NM_007335, intron 33 of 36) 18963 NM_001607 30 Hs.643487 NM_001607 ENSG00000060971 ACAA1 ACAA|PTHIO|THIO acetyl-CoA acyltransferase 1 protein-coding 765.5-3 chrX 11137358 11138218 + 2 NA non-coding (NR_109776, exon 15 of 15) non-coding (NR_109776, exon 15 of 15) 26456 NM_005333 3052 Hs.211571 NM_005333 ENSG00000004961 HCCS CCHL|LSDMCA1|MCOPS7|MLS holocytochrome c synthase protein-coding 683.667-2 chr3 47989804 47990530 + 2 NA intron (NM_002375, intron 2 of 18) intron (NM_002375, intron 2 of 18) 98681 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 267.667-11 chr19 46076102 46076383 + 2 NA intron (NR_163177, intron 1 of 5) MLT1A1|LTR|ERVL-MaLR 1387 NR_163175 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 299.167-12 chr19 29467976 29468458 + 2 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 57535 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 346.5-13 chr8 122467494 122467676 + 2 NA intron (NR_131202, intron 2 of 3) L1PREC2|LINE|L1 101059 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 656.333-2 chr18 48465369 48466025 + 2 NA Intergenic Intergenic -53112 NM_001371287 372-3 chr14 45202047 45202337 + 2 NA TTS (NM_018353) TTS (NM_018353) 51010 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 465.833-2 chr14 70919098 70919534 + 2 NA intron (NM_014982, intron 1 of 35) intron (NM_014982, intron 1 of 35) 11857 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 260.833-6 chr2 119163970 119164170 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -5319 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 347.667-11 chr5 104347058 104347320 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -752285 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 837.334-2 chr18 35756073 35756745 + 2 NA Intergenic Intergenic 101840 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 355.334-6 chr20 6432587 6432779 + 2 NA intron (NR_109953, intron 1 of 3) L1MEf|LINE|L1 5951 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 382.667-3 chr1 221428247 221428441 + 2 NA Intergenic L1M4|LINE|L1 -92048 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 312-10 chr17 59618147 59618416 + 2 NA Intergenic Intergenic -1408 NM_001288653 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 553.334-3 chr2 13693889 13694203 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -687033 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 523-2 chr10 99884479 99884886 + 2 NA intron (NM_015221, intron 14 of 16) AluSz6|SINE|Alu 29410 NM_001318327 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 254.333-31 chr7 37034019 37034207 + 2 NA intron (NM_001206480, intron 15 of 21) MLT1B|LTR|ERVL-MaLR 36317 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 414.167-6 chr4 82456536 82457109 + 2 NA intron (NM_021204, intron 4 of 5) intron (NM_021204, intron 4 of 5) 26232 NR_120457 58478 Hs.18442 NM_021204 ENSG00000145293 ENOPH1 E1|MASA|MST145|mtnC enolase-phosphatase 1 protein-coding 460.5 chr1 110554859 110555525 + 2 NA Intergenic MIRb|SINE|MIR -36017 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 303.334-17 chr8 120971063 120971371 + 2 NA Intergenic Intergenic -159171 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 345.834 chr1 154213720 154214019 + 2 NA intron (NM_001297720, intron 3 of 5) intron (NM_001297720, intron 3 of 5) -6303 NM_001127320 9898 Hs.490551 NM_014847 ENSG00000143569 UBAP2L NICE-4|NICE4 ubiquitin associated protein 2 like protein-coding 365.333-4 chr11 84297289 84297491 + 2 NA intron (NM_001142699, intron 7 of 27) L2a|LINE|L2 19949 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 386.5-5 chr2 37590419 37590844 + 2 NA Intergenic Intergenic 81568 NM_001270438 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 423.334-2 chr15 43225388 43225663 + 2 NA Intergenic Intergenic -4400 NM_001114134 2038 Hs.368642 NM_000119 ENSG00000166947 EPB42 PA|SPH5 erythrocyte membrane protein band 4.2 protein-coding 231.667-11 chr2 10508083 10508267 + 2 NA Intergenic L1MB7|LINE|L1 58447 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 265-12 chr21 23628729 23628894 + 2 NA Intergenic L1ME1|LINE|L1 -243976 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 225.333-2 chr1 98978963 98979220 + 2 NA intron (NM_001037317, intron 1 of 5) L2a|LINE|L2 -25185 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 405-14 chr7 136874590 136875052 + 2 NA intron (NM_001006629, intron 1 of 1) intron (NM_001006629, intron 1 of 1) 5575 NM_001006628 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 182.666-6 chr22 43691282 43691432 + 2 NA intron (NM_198856, intron 8 of 29) intron (NM_198856, intron 8 of 29) 120948 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 402.667-18 chr8 131551596 131551927 + 2 NA Intergenic Intergenic -352332 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 417.999 chr13 71683302 71683631 + 2 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 183726 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 294-17 chr5 174910684 174910865 + 2 NA Intergenic Intergenic 84957 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 207.5-8 chr11 17515590 17515836 + 2 NA intron (NM_153676, intron 15 of 26) intron (NM_153676, intron 15 of 26) 28703 NM_001297764 10083 Hs.502072 NM_005709 ENSG00000006611 USH1C AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst USH1 protein network component harmonin protein-coding 275-24 chr5 164229364 164229578 + 2 NA Intergenic Intergenic 237931 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 703.334 chr11 44927015 44927598 + 2 NA intron (NM_130783, intron 9 of 9) intron (NM_130783, intron 9 of 9) 22854 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 259-35 chr6 129841650 129841903 + 2 NA intron (NM_001010876, intron 3 of 4) intron (NM_001010876, intron 3 of 4) 19539 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 393-5 chr5 95393953 95394320 + 2 NA intron (NM_152548, intron 2 of 9) intron (NM_152548, intron 2 of 9) 2770 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 256.833-10 chr3 140126625 140126791 + 2 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 191523 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 223-21 chr2 39130839 39131070 + 2 NA Intergenic ERVL-int|LTR|ERVL -10491 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 318-15 chr5 15226648 15226936 + 2 NA intron (NR_109944, intron 2 of 2) L1MB4|LINE|L1 39768 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 646.333-2 chr3 64023346 64024133 + 2 NA promoter-TSS (NM_001271781) promoter-TSS (NM_001271781) -133 NM_001271779 9861 Hs.152536 NM_014814 ENSG00000163636 PSMD6 Rpn7|S10|SGA-113M|p42A|p44S10 proteasome 26S subunit, non-ATPase 6 protein-coding 589 chr18 21612156 21612715 + 2 NA exon (NM_006938, exon 1 of 4) exon (NM_006938, exon 1 of 4) 121 NM_001291916 6632 Hs.464734 NM_006938 ENSG00000167088 SNRPD1 HsT2456|SMD1|SNRPD|Sm-D1 small nuclear ribonucleoprotein D1 polypeptide protein-coding 686.834 chr2 218168851 218169371 + 2 NA Intergenic Intergenic -2149 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 547.167-3 chr3 151380621 151381148 + 2 NA intron (NM_053002, intron 30 of 42) intron (NM_053002, intron 30 of 42) 3928 NM_022788 64805 Hs.591281 NM_022788 ENSG00000169313 P2RY12 ADPG-R|BDPLT8|HORK3|P2T(AC)|P2Y(12)R|P2Y(AC)|P2Y(ADP)|P2Y(cyc)|P2Y12|SP1999 purinergic receptor P2Y12 protein-coding 594.5-2 chr10 14498876 14499387 + 2 NA Intergenic Intergenic 33583 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 398-11 chr2 40206873 40207125 + 2 NA intron (NM_001351483, intron 2 of 8) Kanga1b|DNA|TcMar-Tc2 223305 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 395.666-2 chr12 11875860 11876270 + 2 NA intron (NM_001987, intron 5 of 7) intron (NM_001987, intron 5 of 7) -173796 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 542.333 chr12 7960785 7961142 + 2 NA Intergenic Intergenic -24776 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 298-8 chr19 44891030 44891210 + 2 NA promoter-TSS (NM_001128917) promoter-TSS (NM_001128917) -100 NM_001128916 10452 Hs.655909 NM_006114 ENSG00000130204 TOMM40 C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40 translocase of outer mitochondrial membrane 40 protein-coding 287-29 chr9 34117015 34117216 + 2 NA intron (NM_015397, intron 2 of 8) intron (NM_015397, intron 2 of 8) 9583 NM_015397 25853 Hs.493750 NM_015397 ENSG00000198876 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 614.5 chr10 12782408 12783125 + 2 NA intron (NM_001351032, intron 7 of 11) intron (NM_001351032, intron 7 of 11) -57413 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 352-10 chr5 83281840 83282031 + 2 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -189739 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 388-5 chr15 78045334 78045561 + 2 NA intron (NM_144572, intron 2 of 12) L1MC5a|LINE|L1 32205 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 605.333-3 chr6 50366976 50367367 + 2 NA Intergenic MIR1_Amn|SINE|MIR -317242 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 359.167-4 chr2 85648571 85648834 + 2 NA intron (NR_046347, intron 12 of 12) L2b|LINE|L2 19497 NM_000542 6439 Hs.512690 NM_000542 ENSG00000168878 SFTPB PSP-B|SFTB3|SFTP3|SMDP1|SP-B surfactant protein B protein-coding 373.333-4 chr11 8249901 8250147 + 2 NA intron (NM_001270428, intron 1 of 3) intron (NM_001270428, intron 1 of 3) 13854 NR_073006 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 489.333 chr11 12288484 12288816 + 2 NA intron (NM_032867, intron 1 of 8) L2b|LINE|L2 1750 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 692.001 chr15 33132946 33133411 + 2 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 61536 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 192.667-24 chr3 35254905 35255038 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 139052 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 303.333-12 chr4 188008070 188008579 + 2 NA Intergenic L1MA9|LINE|L1 12553 NM_174900 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 297.5-19 chr6 82270907 82271175 + 2 NA Intergenic Intergenic -23297 NM_015525 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 381.833-4 chr14 35768509 35768777 + 2 NA intron (NM_014990, intron 4 of 40) AluJr|SINE|Alu -5712 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 214-18 chr15 61299933 61300139 + 2 NA Intergenic L1MC1|LINE|L1 -70734 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 459-6 chr8 110380920 110381258 + 2 NA Intergenic Intergenic -405318 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 293.5-18 chr5 108247049 108247296 + 2 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 134926 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 487.333-3 chr16 64910018 64910375 + 2 NA Intergenic Intergenic 211867 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 452 chr10 69861276 69861687 + 2 NA intron (NM_001368898, intron 3 of 33) intron (NM_001368898, intron 3 of 33) 59575 NM_001320951 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 186.667-26 chr16 2258138 2258257 + 2 NA intron (NM_006711, intron 6 of 7) intron (NM_006711, intron 6 of 7) -6610 NM_001178029 1632 Hs.403436 NM_001919 ENSG00000167969 ECI1 DCI enoyl-CoA delta isomerase 1 protein-coding 368.334-7 chr3 190567698 190567982 + 2 NA intron (NR_157352, intron 3 of 10) intron (NR_157352, intron 3 of 10) 53755 NM_001167930 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 352.667-10 chr5 172760037 172760226 + 2 NA intron (NR_161233, intron 3 of 3) L1MEg|LINE|L1 4628 NR_161233 101928093 Hs.646902 NR_161233 LOC101928093 - uncharacterized LOC101928093 ncRNA 907.833-2 chr6 83614721 83615385 + 2 NA intron (NM_001242794, intron 9 of 19) intron (NM_001242794, intron 9 of 19) 93506 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 272.166 chr10 65683729 65684048 + 2 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 112463 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 587.5 chr22 45096394 45096977 + 2 NA Intergenic L1MB3|LINE|L1 55899 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 292-14 chr2 66423404 66423624 + 2 NA non-coding (NR_046438, exon 4 of 4) non-coding (NR_046438, exon 4 of 4) 9956 NR_046438 730198 Hs.526753 NR_046438 MEIS1-AS3 - MEIS1 antisense RNA 3 ncRNA 360.5-10 chr5 130141950 130142135 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 237577 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 609.167-4 chr4 74932349 74932888 + 2 NA promoter-TSS (NM_015393) promoter-TSS (NM_015393) -498 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 350-21 chr7 93085981 93086239 + 2 NA Intergenic L1MA5|LINE|L1 31869 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 253.5-20 chr3 116093061 116093247 + 2 NA intron (NM_001318915, intron 1 of 8) MER20|DNA|hAT-Charlie -188028 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 732.834 chr1 218334626 218335229 + 2 NA 3' UTR (NM_016052, exon 5 of 5) 3' UTR (NM_016052, exon 5 of 5) -10357 NM_001135599 7042 Hs.133379 NM_003238 ENSG00000092969 TGFB2 G-TSF|LDS4|TGF-beta2 transforming growth factor beta 2 protein-coding 253-22 chr3 148125638 148125852 + 2 NA Intergenic Intergenic 47586 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 370-18 chr9 79609755 79610102 + 2 NA intron (NM_001282760, intron 5 of 20) intron (NM_001282760, intron 5 of 20) 36751 NM_001351547 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 347.333 chr1 151346447 151346690 + 2 NA promoter-TSS (NR_131972) promoter-TSS (NR_131972) -442 NR_131972 101927886 Hs.634042 NR_131972 GBAT2 - glioblastoma multiforme-associated transcript 2 ncRNA 170.333-38 chr3 1270241 1270398 + 2 NA intron (NM_001289080, intron 4 of 22) intron (NM_001289080, intron 4 of 22) 177295 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 529.333-2 chr14 67903366 67903712 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 79947 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 1046.33-2 chrX 131746606 131747823 + 2 NA intron (NR_026975, intron 10 of 12) intron (NR_026975, intron 10 of 12) 83429 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 329.5-8 chr16 72501934 72502249 + 2 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 162879 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 536.166-3 chr17 57459368 57459998 + 2 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 63914 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 377.667-8 chr6 47097028 47097558 + 2 NA Intergenic Intergenic -54961 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 593.667-3 chr22 37455040 37455614 + 2 NA Intergenic MIR|SINE|MIR -27848 NM_052906 114794 Hs.344170 NM_052906 ENSG00000166897 ELFN2 LRRC62|PPP1R29 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding 188.834-13 chr8 48408685 48408830 + 2 NA Intergenic Intergenic -142810 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 335.834-4 chr2 11216122 11216316 + 2 NA intron (NM_001321643, intron 12 of 32) intron (NM_001321643, intron 12 of 32) 60752 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 299-22 chr7 36969055 36969275 + 2 NA intron (NM_001206480, intron 16 of 21) (ATATT)n|Simple_repeat|Simple_repeat 15947 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 487-4 chr7 129829913 129830416 + 2 NA TTS (NM_003344) TTS (NM_003344) -55150 NR_029615 406959 NR_029615 ENSG00000207691 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 369.5 chr10 27934754 27935048 + 2 NA intron (NM_001290021, intron 9 of 13) intron (NM_001290021, intron 9 of 13) 46970 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 332-6 chr13 49699826 49700069 + 2 NA 3' UTR (NM_002267, exon 17 of 17) 3' UTR (NM_002267, exon 17 of 17) -8460 NR_103803 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 694 chr1 164787055 164787922 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) -12847 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 236.5-7 chr11 114846514 114846713 + 2 NA Intergenic Intergenic 168086 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 227.5-17 chr2 9914847 9915083 + 2 NA intron (NM_001318977, intron 11 of 13) intron (NM_001318977, intron 11 of 13) -36728 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 324.333-7 chr3 121764707 121764966 + 2 NA Intergenic L1PA15-16|LINE|L1 -15069 NM_001256488 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 386-10 chr6 144216109 144216433 + 2 NA Intergenic CpG 65754 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 506 chr19 37071879 37072177 + 2 NA Intergenic Intergenic -6194 NM_001329519 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 257.333-7 chr12 116262028 116262250 + 2 NA intron (NM_015335, intron 1 of 30) intron (NM_015335, intron 1 of 30) 15047 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 322.5-11 chr19 46948266 46948480 + 2 NA intron (NM_004491, intron 3 of 6) intron (NM_004491, intron 3 of 6) -71464 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 490-3 chr2 114634014 114634515 + 2 NA intron (NM_001321908, intron 2 of 25) L1MC5a|LINE|L1 172687 NM_001321911 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 474.666 chr12 12836696 12837240 + 2 NA Intergenic MIRb|SINE|MIR 23622 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 228-36 chr5 32761477 32761702 + 2 NA intron (NM_001364460, intron 2 of 6) L1MEf|LINE|L1 50268 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 344.5-10 chr21 29276706 29277044 + 2 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -22047 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 330.833-5 chr12 13165665 13165932 + 2 NA Intergenic Intergenic -30928 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 262.667-18 chr2 14371839 14371999 + 2 NA intron (NR_103814, intron 1 of 3) L1PA14|LINE|L1 29039 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 270-39 chr8 42709375 42709569 + 2 NA intron (NM_001347717, intron 3 of 6) intron (NM_001347717, intron 3 of 6) 12096 NM_001347717 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 790-3 chr19 27773660 27774573 + 2 NA Intergenic Intergenic -19315 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 568.167-2 chr7 2121382 2121857 + 2 NA intron (NM_001013837, intron 11 of 18) intron (NM_001013837, intron 11 of 18) -32567 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 372.5-8 chr2 115274610 115274961 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -34452 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 395-6 chr9 28808011 28808309 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 55546 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 302.5-11 chr20 20472050 20472273 + 2 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 104057 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 530.334 chr15 68136883 68137278 + 2 NA intron (NM_016166, intron 2 of 13) L1ME4c|LINE|L1 69030 NM_001286694 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 423.5-9 chr7 78743813 78744085 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -265039 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 426.167-3 chr14 40577004 40577372 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -377523 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 247-12 chr14 46239896 46240079 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 175828 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 207.333-15 chr14 70329982 70330108 + 2 NA intron (NM_001202549, intron 3 of 4) L1ME3B|LINE|L1 29638 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 429.334-2 chr15 68632732 68633055 + 2 NA intron (NM_001190457, intron 1 of 11) intron (NM_001190457, intron 1 of 11) 905 NM_001190457 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 420.666-2 chr16 80825483 80825819 + 2 NA Intergenic L1M6|LINE|L1 -21053 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 254.833-9 chr16 47498064 47498261 + 2 NA intron (NM_001031835, intron 3 of 31) intron (NM_001031835, intron 3 of 31) 36831 NM_000293 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 321-23 chr7 1182046 1182280 + 2 NA Intergenic AluSx|SINE|Alu 21378 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 381.667-4 chr12 15788199 15788401 + 2 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 1088 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 493.333-6 chr8 106347393 106347708 + 2 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 77372 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 356-7 chr12 41992586 41992885 + 2 NA Intergenic MIR|SINE|MIR 152139 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 412.833 chr1 218374889 218375309 + 2 NA intron (NR_138149, intron 2 of 7) intron (NR_138149, intron 2 of 7) -29421 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 245-4 chr1 215943142 215943271 + 2 NA intron (NM_206933, intron 37 of 71) intron (NM_206933, intron 37 of 71) -129259 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 295.334-2 chr12 48515517 48515697 + 2 NA Intergenic L1ME4c|LINE|L1 -10025 NM_001005203 341568 Hs.524373 NM_001005203 ENSG00000284723 OR8S1 - olfactory receptor family 8 subfamily S member 1 protein-coding 883.667 chr17 7296150 7297261 + 2 NA Intergenic Intergenic -2066 NM_015982 51087 Hs.567494 NM_015982 ENSG00000006047 YBX2 CONTRIN|CSDA3|DBPC|MSY2 Y-box binding protein 2 protein-coding 311-18 chr7 3513334 3513681 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 212255 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 172-24 chr19 33136536 33136687 + 2 NA intron (NR_135565, intron 1 of 11) AluSz6|SINE|Alu 4497 NR_135565 126248 Hs.211046 NM_173479 ENSG00000166359 WDR88 PQWD WD repeat domain 88 protein-coding 355-14 chr8 136882868 136883189 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 352230 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 348.5-6 chr10 81179999 81180242 + 2 NA Intergenic Intergenic 530323 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 436.667-4 chr13 84478959 84479399 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) -304475 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 360.333-2 chr11 132941171 132941473 + 2 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 2315 NM_002545 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 339.334-7 chr7 74279737 74280005 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -9536 NM_032421 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 482-12 chr7 21191226 21191638 + 2 NA Intergenic Intergenic -236651 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 407.833-3 chr2 67733576 67733805 + 2 NA Intergenic Intergenic 91872 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 248-22 chr2 109636322 109636587 + 2 NA Intergenic L1MC4|LINE|L1 22090 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 182.5-19 chr17 32937075 32937313 + 2 NA intron (NM_001301746, intron 7 of 8) intron (NM_001301746, intron 7 of 8) 9041 NM_015544 26022 Hs.3447 NM_015544 ENSG00000006042 TMEM98 TADA1 transmembrane protein 98 protein-coding 832.834 chr18 9771299 9771929 + 2 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 63313 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 423-10 chr3 128497996 128498350 + 2 NA intron (NR_125398, intron 2 of 2) L2a|LINE|L2 -4986 NM_032638 2624 Hs.367725 NM_032638 ENSG00000179348 GATA2 DCML|IMD21|MONOMAC|NFE1B GATA binding protein 2 protein-coding 359-4 chr11 125452549 125452914 + 2 NA intron (NM_005103, intron 7 of 9) intron (NM_005103, intron 7 of 9) -42483 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 308.5-4 chr10 37434273 37434566 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 125233 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 400.667-2 chr12 94560710 94561110 + 2 NA promoter-TSS (NR_049885) promoter-TSS (NR_049885) -879 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 256.833-7 chr19 56121424 56121710 + 2 NA promoter-TSS (NM_001351682) promoter-TSS (NM_001351682) -272 NM_001351682 126208 Hs.397153 NM_001002836 ENSG00000142409 ZNF787 TIP20 zinc finger protein 787 protein-coding 440.5-4 chr4 100873749 100874232 + 2 NA Intergenic L2c|LINE|L2 -198877 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 424.667 chr10 32634032 32634345 + 2 NA intron (NM_001321115, intron 19 of 43) intron (NM_001321115, intron 19 of 43) 188048 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 563-6 chr9 107583742 107584051 + 2 NA Intergenic AluSq2|SINE|Alu -94127 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 329.333-8 chr18 22472081 22472345 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -54298 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 592.833 chr17 19744782 19745324 + 2 NA exon (NM_001135167, exon 2 of 11) exon (NM_001135167, exon 2 of 11) 406 NM_001135168 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 570-4 chr7 38725787 38726366 + 2 NA 3' UTR (NM_080631, exon 28 of 28) 3' UTR (NM_080631, exon 28 of 28) -38987 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 188-37 chr3 196062569 196062751 + 2 NA intron (NM_001313966, intron 10 of 16) intron (NM_001313966, intron 10 of 16) 19430 NM_001313965 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 510.834-3 chr20 47219905 47220640 + 2 NA exon (NM_001281778, exon 21 of 22) exon (NM_001281778, exon 21 of 22) 53305 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 222.666-3 chr12 61352664 61352855 + 2 NA Intergenic Intergenic 840080 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 486.833-5 chr4 184263758 184264366 + 2 NA Intergenic Intergenic -46189 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 625.5 chr11 16819967 16820429 + 2 NA intron (NM_001329630, intron 10 of 26) MER5A|DNA|hAT-Charlie 81551 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 330.334 chr14 63826296 63826809 + 2 NA Intergenic AluSc|SINE|Alu -26413 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 216-46 chr7 16098745 16098943 + 2 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -111642 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 232-6 chr10 107741161 107741289 + 2 NA Intergenic Intergenic 328068 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 221.834-3 chr15 68772086 68772300 + 2 NA Intergenic L2|LINE|L2 29732 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 376.667-8 chr5 147454509 147454792 + 2 NA promoter-TSS (NM_001387) promoter-TSS (NM_001387) -958 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 911.499 chr3 105685874 105686804 + 2 NA intron (NR_135809, intron 14 of 18) intron (NR_135809, intron 14 of 18) 181252 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 390-7 chr2 171630003 171630256 + 2 NA Intergenic Intergenic -57340 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 333.333-2 chr10 77504763 77505154 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 132850 NM_001271519 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 412-4 chr15 23629174 23629865 + 2 NA Intergenic Intergenic 18348 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 519-2 chrX 118839067 118839505 + 2 NA promoter-TSS (NR_110393) promoter-TSS (NR_110393) -270 NR_110393 101928287 Hs.496647 NR_110393 ENSG00000203650 LINC01285 - long intergenic non-protein coding RNA 1285 ncRNA 254.333-29 chr3 117898704 117898953 + 2 NA Intergenic Intergenic -207903 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 260.666-6 chr8 67082431 67082695 + 2 NA intron (NM_001363133, intron 3 of 27) intron (NM_001363133, intron 3 of 27) -1285 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 310.833-9 chr21 28515346 28515777 + 2 NA Intergenic Intergenic -23757 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 521.167 chr12 120325861 120326232 + 2 NA intron (NM_000928, intron 1 of 3) intron (NM_000928, intron 1 of 3) 1733 NM_000928 5319 Hs.992 NM_000928 ENSG00000170890 PLA2G1B PLA2|PLA2A|PPLA2 phospholipase A2 group IB protein-coding 373-7 chr17 39366586 39366854 + 2 NA intron (NM_001370209, intron 1 of 13) HAL1|LINE|L1 34906 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 239-30 chr5 97623012 97623210 + 2 NA intron (NR_105028, intron 2 of 3) L1PA15|LINE|L1 118415 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 276.5-5 chr16 76019410 76019816 + 2 NA Intergenic Intergenic -257788 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 359.5-2 chr11 42769588 42769878 + 2 NA Intergenic L1M3|LINE|L1 499636 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 264.5-10 chr17 60955944 60956271 + 2 NA intron (NM_001330413, intron 14 of 25) L1MC4|LINE|L1 278256 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 293.333-3 chr10 62971564 62971825 + 2 NA Intergenic Intergenic -152527 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 595.167-2 chr10 90788055 90788700 + 2 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 69662 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 248.833-28 chr9 73149615 73149913 + 2 NA Intergenic Intergenic -2101 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 334-5 chr16 60531815 60532028 + 2 NA Intergenic Intergenic -172128 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 564.5-2 chr16 87849948 87850389 + 2 NA intron (NM_003486, intron 2 of 9) intron (NM_003486, intron 2 of 9) -3728 NR_162122 113218509 NR_162122 MIR11401 - microRNA 11401 ncRNA 367-18 chr3 70767920 70768288 + 2 NA Intergenic L1ME3Cz|LINE|L1 296820 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 233.667-37 chr8 130671402 130671519 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -227786 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 372.5-9 chr2 210248581 210248953 + 2 NA Intergenic Intergenic -23320 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 580.167-7 chr6 66662228 66662772 + 2 NA Intergenic Intergenic 874621 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 438-8 chr7 86953966 86954318 + 2 NA intron (NM_001291990, intron 2 of 21) intron (NM_001291990, intron 2 of 21) 11757 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 320.667-11 chr3 82880711 82880899 + 2 NA Intergenic Intergenic 894663 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 408.667-2 chr16 81442434 81442698 + 2 NA Intergenic Intergenic -2604 NM_198390 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 288-6 chr12 14762903 14763115 + 2 NA Intergenic Intergenic 8122 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 324.667-23 chr8 130902462 130902786 + 2 NA intron (NM_001115, intron 7 of 17) intron (NM_001115, intron 7 of 17) 138285 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 215.167-28 chr5 171115816 171115947 + 2 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) -193367 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 310-10 chr14 83291677 83291903 + 2 NA Intergenic Intergenic 649158 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 643.333 chr6 43769215 43769864 + 2 NA promoter-TSS (NM_001171622) promoter-TSS (NM_001171622) -670 NM_001171625 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 591.501 chr2 203225030 203225575 + 2 NA Intergenic Intergenic -13139 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 478.833 chr1 167343017 167343427 + 2 NA intron (NM_001365849, intron 3 of 16) intron (NM_001365849, intron 3 of 16) 14152 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 324-10 chr22 27720195 27720471 + 2 NA Intergenic Intergenic 81423 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 253.333-27 chr5 11426392 11426736 + 2 NA intron (NM_001288715, intron 2 of 20) MER45B|DNA|hAT-Tip100 162353 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 559 chr1 161209712 161210063 + 2 NA exon (NM_004550, exon 7 of 15) exon (NM_004550, exon 7 of 15) -5408 NM_004106 2207 Hs.433300 NM_004106 ENSG00000158869 FCER1G FCRG Fc fragment of IgE receptor Ig protein-coding 367-20 chr5 28462140 28462377 + 2 NA Intergenic Intergenic -174593 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 237.333-16 chr17 30060980 30061297 + 2 NA intron (NM_198529, intron 14 of 22) intron (NM_198529, intron 14 of 22) -55669 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 265-25 chr7 129710025 129710257 + 2 NA intron (NM_005011, intron 6 of 10) intron (NM_005011, intron 6 of 10) 60351 NR_029614 406958 NR_029614 ENSG00000207990 MIR182 MIRN182|miRNA182|mir-182 microRNA 182 ncRNA 219.333-2 chr1 21659178 21659348 + 2 NA intron (NM_002885, intron 1 of 24) CpG -7365 NM_001145658 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 455.333-7 chr4 145477599 145477938 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -3538 NM_001354812 4086 Hs.604588 NM_005900 ENSG00000170365 SMAD1 BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 SMAD family member 1 protein-coding 319.001-2 chr15 87183662 87184093 + 2 NA Intergenic AluJb|SINE|Alu -195451 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 410-7 chr2 182311763 182312153 + 2 NA intron (NM_005019, intron 1 of 14) L1ME3|LINE|L1 -69895 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 347-15 chr2 101146524 101146819 + 2 NA intron (NM_001102426, intron 1 of 19) L1MA6|LINE|L1 4776 NM_001330348 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 340.5-6 chr4 8594373 8594884 + 2 NA intron (NM_003652, intron 1 of 9) intron (NM_003652, intron 1 of 9) 1863 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 727.5 chr1 58769180 58769679 + 2 NA Intergenic Intergenic 14618 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 712.333 chr10 74081082 74081810 + 2 NA intron (NM_014000, intron 6 of 21) intron (NM_014000, intron 6 of 21) 69382 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 299.834-8 chr3 6533268 6533457 + 2 NA Intergenic Intergenic 272087 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 365.5-15 chr9 138004760 138005028 + 2 NA intron (NM_001243812, intron 15 of 45) L1MA4A|LINE|L1 40177 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 332-10 chr18 12721350 12721728 + 2 NA intron (NM_147163, intron 5 of 6) L1MB4|LINE|L1 18497 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 604.833 chr13 59680230 59680901 + 2 NA intron (NM_001258366, intron 26 of 26) intron (NM_001258366, intron 26 of 26) -332153 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 314-10 chr2 21384268 21384510 + 2 NA Intergenic Intergenic 260403 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 346.5-3 chr14 20585628 20585813 + 2 NA intron (NM_145250, intron 2 of 2) intron (NM_145250, intron 2 of 2) -2504 NR_122043 254028 Hs.652569 NR_122043 ENSG00000258573 LOC254028 - uncharacterized LOC254028 ncRNA 221.834-6 chr22 18203561 18203884 + 2 NA intron (NR_136570, intron 1 of 11) (TATATTA)n|Simple_repeat|Simple_repeat 2141 NR_136570 100996415 Hs.645542 NR_136570 FAM230D LINC02592 family with sequence similarity 230 member D ncRNA 477.499 chr1 160251848 160252368 + 2 NA intron (NR_028104, intron 1 of 12) intron (NR_028104, intron 1 of 12) -9641 NR_147618 100287049 Hs.657648 NR_147618 ENSG00000228606 LOC100287049 - uncharacterized LOC100287049 ncRNA 503.166-2 chr3 141311541 141311970 + 2 NA Intergenic CpG -12431 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 432.5-4 chr2 183079447 183079692 + 2 NA intron (NR_135688, intron 1 of 2) intron (NR_135688, intron 1 of 2) 822 NM_080876 142679 Hs.132237 NM_080876 ENSG00000162999 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 178-31 chr4 27359271 27359445 + 2 NA Intergenic Intergenic 141879 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 305.333-7 chr2 95079049 95079259 + 2 NA Intergenic Intergenic 42403 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 363-9 chr8 109930875 109931164 + 2 NA Intergenic L1M5|LINE|L1 44752 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 277.666-4 chr14 102181580 102181724 + 2 NA intron (NM_001353659, intron 1 of 1) intron (NM_001353659, intron 1 of 1) 41755 NM_001242416 91833 Hs.36859 NM_144574 ENSG00000140153 WDR20 DMR WD repeat domain 20 protein-coding 432.5-8 chrX 45763801 45764095 + 2 NA Intergenic Intergenic -16824 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 496.667 chr11 123576913 123577217 + 2 NA intron (NM_001286564, intron 1 of 19) intron (NM_001286564, intron 1 of 19) 16803 NM_001286564 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 343.5-6 chr17 47189013 47189217 + 2 NA intron (NM_001256, intron 1 of 18) CpG 180 NM_001256 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 359.333-12 chr4 54280733 54281019 + 2 NA intron (NM_001347829, intron 16 of 22) Charlie18a|DNA|hAT-Charlie 46916 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 516 chr1 55284615 55285011 + 2 NA Intergenic AluJr|SINE|Alu 59172 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 535.5-2 chr6 39920154 39920510 + 2 NA intron (NR_033233, intron 2 of 8) L1ME3F|LINE|L1 7384 NM_005943 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 341.333-6 chr17 35282282 35282658 + 2 NA Intergenic ERVL-int|LTR|ERVL 39398 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 634.5 chr1 95308463 95309210 + 2 NA Intergenic Intergenic 9427 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 502.5-6 chr4 37022176 37022556 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner 20587 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 485.001 chr19 6562271 6562674 + 2 NA Intergenic AluSx1|SINE|Alu 28678 NM_001252 970 Hs.501497 NM_001252 ENSG00000125726 CD70 CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A CD70 molecule protein-coding 483.5-3 chr16 30628847 30629551 + 2 NA Intergenic Intergenic -18424 NR_073481 115509 Hs.454685 NM_138447 ENSG00000156853 ZNF689 TIPUH1 zinc finger protein 689 protein-coding 247.667-36 chr8 65689280 65689403 + 2 NA intron (NM_001145839, intron 3 of 6) intron (NM_001145839, intron 3 of 6) 19468 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 362.667-10 chr7 107708159 107708580 + 2 NA intron (NM_000441, intron 18 of 20) MER31-int|LTR|ERV1 35263 NR_144536 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 532-4 chr5 148010336 148010775 + 2 NA Intergenic Intergenic -53417 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 544.833-2 chr13 47598289 47598901 + 2 NA Intergenic Intergenic 334027 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 337.667-17 chr7 26090905 26091099 + 2 NA Intergenic Intergenic -61196 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 264-2 chr1 101533742 101534003 + 2 NA Intergenic LTR107_Mam|LTR|LTR 210035 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 318.667-16 chr7 93534855 93535077 + 2 NA intron (NM_001164737, intron 2 of 15) MIRb|SINE|MIR 24844 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 318.834-9 chr4 1351990 1352518 + 2 NA intron (NM_020894, intron 4 of 13) intron (NM_020894, intron 4 of 13) 4698 NM_001317935 57654 Hs.380475 NM_020894 ENSG00000163945 UVSSA KIAA1530|UVSS3 UV stimulated scaffold protein A protein-coding 218.5-24 chr3 130784479 130784671 + 2 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -37746 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 254-5 chr10 57926825 57927020 + 2 NA Intergenic Intergenic 340972 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 546.167-2 chr1 192445671 192446274 + 2 NA Intergenic Intergenic 128980 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 246-33 chr7 120866529 120866693 + 2 NA Intergenic Intergenic -8467 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 826.333 chr6 143279345 143280024 + 2 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 114902 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 673.167 chr1 44036558 44037023 + 2 NA Intergenic Intergenic -5328 NM_001328630 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 260.833-11 chr4 41545028 41545251 + 2 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) 6982 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 500.167 chr13 45309433 45309829 + 2 NA Intergenic Intergenic 26816 NR_145985 109616966 NR_145726 ENSG00000253051 SNORA31B - small nucleolar RNA, H/ACA box 31B snoRNA 744.166 chr13 75870185 75870944 + 2 NA promoter-TSS (NM_001257995) promoter-TSS (NM_001257995) -474 NM_001257995 729420 Hs.586820 NM_001257995 LMO7DN C13orf45 LMO7 downstream neighbor protein-coding 268.333-13 chr2 125516679 125517002 + 2 NA Intergenic L1PA17|LINE|L1 601145 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 194.667-18 chr13 86901959 86902066 + 2 NA Intergenic Intergenic -9908 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 535.167-6 chr7 33892707 33893135 + 2 NA Intergenic Intergenic -11994 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 336-14 chr4 26620881 26621133 + 2 NA intron (NM_018317, intron 4 of 20) intron (NM_018317, intron 4 of 20) 36923 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 652.666 chr2 170812878 170813374 + 2 NA Intergenic Intergenic -3564 NM_013445 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 365.667-10 chr6 75931851 75932345 + 2 NA intron (NM_001563, intron 14 of 16) intron (NM_001563, intron 14 of 16) 140564 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 408.168 chr10 74691175 74691544 + 2 NA intron (NM_001369124, intron 9 of 9) UCON96|Unknown|Unknown -133896 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 445.001-2 chr11 38508599 38508916 + 2 NA Intergenic Intergenic 137599 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 196.666-5 chr8 36664096 36664295 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -120179 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 272-8 chr1 195963294 195963500 + 2 NA Intergenic Intergenic 125318 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 476-4 chr3 58864695 58864977 + 2 NA intron (NR_147234, intron 10 of 10) intron (NR_147234, intron 10 of 10) 40365 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 468-3 chr18 48809278 48809626 + 2 NA intron (NM_014772, intron 9 of 11) L1MC|LINE|L1 133355 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 194.333-11 chr11 107651617 107651912 + 2 NA intron (NM_001308018, intron 10 of 12) intron (NM_001308018, intron 10 of 12) 60292 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 326.334-8 chr6 121520079 121520368 + 2 NA Intergenic Intergenic 84577 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 285.5-33 chr8 137127753 137128272 + 2 NA Intergenic Intergenic 285576 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 400.833-5 chrX 65871665 65872002 + 2 NA Intergenic L1PA11|LINE|L1 -147037 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 837.166 chr2 100606680 100607261 + 2 NA intron (NR_146956, intron 1 of 2) intron (NR_146956, intron 1 of 2) 3231 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 878.834 chr12 54394058 54394824 + 2 NA TTS (NM_002205) TTS (NM_002205) -3143 NM_001130967 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 232.666-4 chr11 80502499 80502710 + 2 NA Intergenic L3|LINE|CR1 260199 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 282.667-27 chr8 118417716 118417916 + 2 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -203185 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 414.666 chr1 89806612 89806986 + 2 NA Intergenic Intergenic -14233 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 287-2 chr10 78211614 78211781 + 2 NA Intergenic Intergenic -36928 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 324.667-6 chr13 23371379 23371556 + 2 NA intron (NM_014363, intron 3 of 9) intron (NM_014363, intron 3 of 9) 4041 NM_001278055 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 386.667-4 chr16 22195876 22196146 + 2 NA Intergenic Intergenic -10267 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K CaMKIII|HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 365.334-2 chr11 15665725 15666169 + 2 NA intron (NM_001293172, intron 1 of 2) intron (NM_001293172, intron 1 of 2) 22062 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 501.333-2 chr17 69393308 69393767 + 2 NA Intergenic Intergenic -21160 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 348.334-8 chr3 180595094 180595404 + 2 NA Intergenic Intergenic -6914 NM_001288582 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 279.167 chr1 86394666 86394896 + 2 NA intron (NM_001366779, intron 1 of 15) intron (NM_001366779, intron 1 of 15) 1280 NM_001366784 57489 Hs.149360 NM_020729 ENSG00000122417 ODF2L - outer dense fiber of sperm tails 2 like protein-coding 372.667-3 chr14 19880805 19881448 + 2 NA Intergenic Intergenic 4858 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 272.833-3 chr11 22130825 22131092 + 2 NA Intergenic L1PA15|LINE|L1 -62127 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 223.666 chr11 112316251 112316369 + 2 NA intron (NR_126004, intron 2 of 3) intron (NR_126004, intron 2 of 3) 45561 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 555.001 chr4 62594820 62595443 + 2 NA Intergenic LTR13|LTR|ERVK -433366 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 641.333-6 chr7 76293916 76295146 + 2 NA Intergenic Intergenic -8142 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 417.833-7 chr22 35043076 35043520 + 2 NA Intergenic MIRb|SINE|MIR -22860 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 347-3 chr10 125343106 125343745 + 2 NA Intergenic Intergenic -182395 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 485.333-8 chr7 93880227 93880513 + 2 NA Intergenic L1PA13|LINE|L1 10383 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 1090.33-3 chr9 137672431 137673316 + 2 NA intron (NM_001354612, intron 1 of 8) intron (NM_001354612, intron 1 of 8) 53868 NM_001354612 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 243.333-45 chr9 70602163 70602659 + 2 NA intron (NM_001366143, intron 19 of 25) intron (NM_001366143, intron 19 of 25) -187754 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 301.333-4 chr12 46151600 46151826 + 2 NA Intergenic Intergenic 114803 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 315-18 chr7 92917657 92917973 + 2 NA TTS (NR_110086) TTS (NR_110086) -81188 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 679.334-2 chr6 44456286 44456843 + 2 NA Intergenic Intergenic 20923 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 291-6 chr10 67303746 67303958 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 99558 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 186.5-34 chr9 130129146 130129258 + 2 NA 3' UTR (NM_001287346, exon 17 of 17) 3' UTR (NM_001287346, exon 17 of 17) 15017 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 347 chr10 108249895 108250181 + 2 NA Intergenic MER52-int|LTR|ERV1 -180745 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 317.834-3 chr8 109758981 109759222 + 2 NA Intergenic L1MA2|LINE|L1 -67310 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 345-23 chr5 146074960 146075240 + 2 NA Intergenic Intergenic 30477 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 505.666 chr21 35324733 35325289 + 2 NA Intergenic Intergenic 255753 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 766 chr6 157322963 157323514 + 2 NA intron (NM_018452, intron 1 of 3) CpG 1021 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 350.834-6 chr7 47872197 47872520 + 2 NA intron (NM_138295, intron 24 of 56) L1MB8|LINE|L1 76133 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 353.5-6 chr12 11506480 11506811 + 2 NA Intergenic MER112|DNA|hAT-Charlie -19967 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 378-12 chr2 35411220 35411469 + 2 NA Intergenic Intergenic -60061 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 335-3 chr11 19078183 19078447 + 2 NA Intergenic L1MEd|LINE|L1 -17598 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 285-19 chr6 132824445 132824619 + 2 NA Intergenic Intergenic 7313 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 324-8 chr17 75700619 75701000 + 2 NA intron (NR_126037, intron 5 of 8) intron (NR_126037, intron 5 of 8) -20650 NM_000213 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 591.167 chr18 43570631 43571522 + 2 NA Intergenic Intergenic -293586 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 307.999-4 chr5 4807233 4807499 + 2 NA Intergenic Intergenic 33885 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 249.333 chr1 19687438 19687704 + 2 NA intron (NM_001349112, intron 14 of 14) intron (NM_001349112, intron 14 of 14) 22696 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 266-16 chr4 15956257 15956472 + 2 NA Intergenic Intergenic 6811 NM_031950 83888 Hs.98785 NM_031950 ENSG00000137441 FGFBP2 HBP17RP|KSP37 fibroblast growth factor binding protein 2 protein-coding 408.001 chr10 73849163 73849453 + 2 NA exon (NM_001367524, exon 5 of 19) exon (NM_001367524, exon 5 of 19) 25247 NM_001367522 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 436.666-2 chr11 17279517 17279929 + 2 NA intron (NM_001352672, intron 1 of 14) intron (NM_001352672, intron 1 of 14) 2753 NM_001352670 4925 Hs.654599 NM_005013 ENSG00000070081 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 215-11 chr14 40860037 40860211 + 2 NA Intergenic L1PA17|LINE|L1 -94587 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 761.333-2 chr2 227460134 227460826 + 2 NA Intergenic MIR|SINE|MIR -11652 NR_049888 100847081 NR_049888 ENSG00000284092 MIR5703 mir-5703 microRNA 5703 ncRNA 291-26 chr9 14985881 14986170 + 2 NA Intergenic AluSx|SINE|Alu -7302 NR_003920 389705 Hs.431257 NR_003920 LOC389705 - histone PARylation factor 1 pseudogene pseudo 243.5-9 chr16 80656947 80657126 + 2 NA intron (NM_152342, intron 2 of 6) L1MEi|LINE|L1 -84228 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 372.333-10 chr8 122269134 122269435 + 2 NA Intergenic Intergenic 299360 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 364.667-12 chr20 46841917 46842135 + 2 NA Intergenic L1MB3|LINE|L1 -52598 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 686-4 chrX 131577885 131578438 + 2 NA Intergenic L1ME3G|LINE|L1 34087 NM_001004486 347468 Hs.553711 NM_001004486 ENSG00000171054 OR13H1 ORX1 olfactory receptor family 13 subfamily H member 1 protein-coding 371.334-3 chr5 170522352 170522976 + 2 NA intron (NM_001278339, intron 1 of 7) intron (NM_001278339, intron 1 of 7) 18644 NM_001278339 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 357-15 chr5 19697281 19697568 + 2 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 188848 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 280.5-4 chr11 69661888 69662241 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 13289 NM_153451 220064 Hs.667996 NM_153451 ENSG00000149716 LTO1 CIAB1|ORAOV1|TAOS1 LTO1 maturation factor of ABCE1 protein-coding 318.834-5 chr2 184395513 184395754 + 2 NA Intergenic Intergenic 16658 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 467.333 chr21 31347580 31347854 + 2 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -3363 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 320.334-9 chr3 99283748 99283943 + 2 NA Intergenic L1M4a2|LINE|L1 -354749 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 441.334-2 chr16 48861903 48862226 + 2 NA Intergenic Intergenic -251884 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 325.334-7 chr21 29364029 29364290 + 2 NA Intergenic MER91B|DNA|hAT-Tip100 -8342 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 372.833 chr10 34531673 34532075 + 2 NA intron (NM_001184789, intron 2 of 22) Tigger2|DNA|TcMar-Tigger 283422 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 282-24 chr6 103063855 103064048 + 2 NA Intergenic L1MA4|LINE|L1 1664966 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 261.667-4 chr1 109420431 109420654 + 2 NA intron (NM_001199772, intron 1 of 7) HAL1|LINE|L1 5906 NM_002790 5686 Hs.485246 NM_002790 ENSG00000143106 PSMA5 PSC5|ZETA proteasome subunit alpha 5 protein-coding 163.5-48 chr7 144437760 144437856 + 2 NA Intergenic Intergenic -27581 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 281-10 chr13 110012302 110012467 + 2 NA Intergenic Intergenic -40901 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 697.667-3 chr17 60640170 60641348 + 2 NA intron (NM_003620, intron 3 of 5) L1PA16|LINE|L1 -37092 NM_001353145 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 199-12 chr14 83416999 83417273 + 2 NA Intergenic Intergenic 774504 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 511.166 chr3 109498720 109499188 + 2 NA Intergenic L1MA5A|LINE|L1 88964 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 236.833-2 chr11 118053653 118053851 + 2 NA intron (NM_001354434, intron 2 of 5) intron (NM_001354434, intron 2 of 5) -23260 NM_001290096 56649 Hs.161985 NM_019894 ENSG00000137648 TMPRSS4 CAPH2|MT-SP2|TMPRSS3 transmembrane serine protease 4 protein-coding 347.167-5 chr2 60884021 60884359 + 2 NA intron (NM_002908, intron 1 of 10) intron (NM_002908, intron 1 of 10) 2616 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 367-6 chr12 121465688 121466022 + 2 NA intron (NM_001005366, intron 12 of 22) intron (NM_001005366, intron 12 of 22) -21503 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 238.333-16 chr13 96650522 96650763 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 223413 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 363 chr1 28341478 28341789 + 2 NA Intergenic AluJr4|SINE|Alu 12593 NM_001127350 54797 Hs.479911 NM_017638 ENSG00000130772 MED18 SRB5|p28b mediator complex subunit 18 protein-coding 397.333-2 chr21 32279047 32279352 + 2 NA promoter-TSS (NM_018944) promoter-TSS (NM_018944) -150 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 330.333-11 chr7 152292530 152292831 + 2 NA intron (NM_170606, intron 6 of 58) Cheshire|DNA|hAT-Charlie 143323 NM_170606 58508 Hs.647120 NM_021230 ENSG00000055609 KMT2C HALR|KLEFS2|MLL3 lysine methyltransferase 2C protein-coding 410-15 chr7 84195617 84195968 + 2 NA Intergenic Intergenic -1003 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 326-6 chr2 26344686 26345013 + 2 NA intron (NR_135916, intron 1 of 12) intron (NR_135916, intron 1 of 12) 962 NM_001321975 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 220.166-4 chr6 106242963 106243158 + 2 NA intron (NR_104402, intron 4 of 5) intron (NR_104402, intron 4 of 5) 73206 NR_104403 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 649.166 chr2 95231196 95231839 + 2 NA Intergenic L1ME2|LINE|L1 -42932 NM_001165977 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 215.5-2 chr12 75699326 75699484 + 2 NA Intergenic L1ME3B|LINE|L1 -187796 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 691-2 chr8 106592050 106592696 + 2 NA intron (NM_018002, intron 3 of 15) MIRb|SINE|MIR -65435 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 333.667-9 chr3 118882311 118882527 + 2 NA Intergenic Intergenic -60657 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 506.333 chr8 130727205 130727789 + 2 NA Intergenic Intergenic -283823 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 214.5-32 chr7 44885490 44885697 + 2 NA promoter-TSS (NM_033224) promoter-TSS (NM_033224) -63 NM_033224 5814 Hs.349150 NM_033224 ENSG00000146676 PURB PURBETA purine rich element binding protein B protein-coding 721.833-2 chr2 20106308 20107196 + 2 NA Intergenic LTR12D|LTR|ERV1 -55124 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 429.167-5 chr16 59333864 59334225 + 2 NA Intergenic LTR12_|LTR|ERV1 421147 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 231-9 chr14 47807276 47807680 + 2 NA Intergenic MIRb|SINE|MIR -12464 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 382.167-7 chr22 39932765 39933032 + 2 NA intron (NM_001291828, intron 1 of 4) MIR|SINE|MIR 6294 NM_001291826 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 907.833 chr3 11803825 11804861 + 2 NA intron (NM_138807, intron 6 of 6) L1MC5|LINE|L1 42542 NR_158713 132001 Hs.475472 NM_138807 ENSG00000144559 TAMM41 C3orf31|RAM41|TAM41 TAM41 mitochondrial translocator assembly and maintenance homolog protein-coding 868.832 chr10 121886748 121887791 + 2 NA intron (NM_001001976, intron 7 of 11) intron (NM_001001976, intron 7 of 11) 40762 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 880.834 chr10 26557056 26558001 + 2 NA intron (NM_019043, intron 11 of 14) intron (NM_019043, intron 11 of 14) 21779 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 404.167-8 chr5 34008617 34009039 + 2 NA promoter-TSS (NM_014324) promoter-TSS (NM_014324) -778 NM_014324 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 671.167-2 chr12 53701518 53702073 + 2 NA Intergenic Intergenic -25465 NM_001002031 517 Hs.524464 NM_005176 ENSG00000135390 ATP5MC2 ATP5A|ATP5G2 ATP synthase membrane subunit c locus 2 protein-coding 413.834 chr18 11955522 11956038 + 2 NA Intergenic Intergenic -25727 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 308-8 chr15 101502114 101502325 + 2 NA Intergenic Intergenic -12235 NM_138319 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 292.667-18 chr5 53032074 53032378 + 2 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 42874 NR_073103 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 477.666 chr12 46353948 46354279 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 18660 NM_018976 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 400.834-3 chr7 89623222 89623726 + 2 NA Intergenic L1PA16|LINE|L1 -495926 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 225.667-20 chr2 81372529 81372658 + 2 NA Intergenic Intergenic 94353 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 295.333-20 chr5 72920352 72920585 + 2 NA Intergenic Intergenic -35573 NM_001146032 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 199-2 chr1 158527371 158527762 + 2 NA Intergenic L1PA15-16|LINE|L1 20539 NM_001005189 391112 Hs.553780 NM_001005189 ENSG00000197532 OR6Y1 OR1-11|OR6Y2 olfactory receptor family 6 subfamily Y member 1 protein-coding 344-20 chr8 71381916 71382279 + 2 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -20028 NM_001288574 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 473.333-2 chr12 8657140 8657605 + 2 NA intron (NM_001297710, intron 2 of 7) AluSq2|SINE|Alu 5454 NR_123733 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 232-29 chr3 78125621 78125863 + 2 NA Intergenic L2a|LINE|L2 -76779 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 307.833-9 chr5 38464208 38464421 + 2 NA 3' UTR (NM_001205301, exon 23 of 23) 3' UTR (NM_001205301, exon 23 of 23) 18768 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 202.5-4 chr1 216530152 216530307 + 2 NA intron (NM_001243518, intron 6 of 7) intron (NM_001243518, intron 6 of 7) -106781 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 374.5-8 chr4 41232660 41232873 + 2 NA intron (NR_102709, intron 1 of 2) L2|LINE|L2 -18224 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 327.5-8 chr14 84785780 84786079 + 2 NA Intergenic Intergenic -486003 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 563.834-3 chr7 65308361 65308828 + 2 NA Intergenic PABL_B-int|LTR|ERV1 -65205 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 375-8 chr16 30821875 30822172 + 2 NA Intergenic Intergenic -34818 NM_001080417 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 297.667-4 chr10 49393297 49393557 + 2 NA intron (NM_001276451, intron 2 of 6) intron (NM_001276451, intron 2 of 6) 2662 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 379.5-3 chr12 26011174 26011437 + 2 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) 37550 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 375.667-6 chr14 68799766 68800054 + 2 NA Intergenic L1ME1|LINE|L1 -3667 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 178-45 chr8 115873577 115873755 + 2 NA Intergenic Intergenic -204691 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 673.5 chr8 40201561 40202238 + 2 NA Intergenic Intergenic 48417 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 567.834-3 chr6 141656614 141657056 + 2 NA Intergenic L1ME3|LINE|L1 431964 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 266.667-16 chr5 26696258 26696440 + 2 NA Intergenic L1MA6|LINE|L1 342237 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 314-5 chr14 89631059 89631359 + 2 NA Intergenic L2c|LINE|L2 -12044 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 211.834-4 chr11 34461857 34462040 + 2 NA intron (NM_001752, intron 9 of 12) intron (NM_001752, intron 9 of 12) 23014 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 496.333 chr10 118544312 118545027 + 2 NA Intergenic Intergenic 50979 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 661.5 chr8 132057491 132058391 + 2 NA intron (NM_001080399, intron 1 of 13) intron (NM_001080399, intron 1 of 13) 1441 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 219.5-31 chr7 27714165 27714315 + 2 NA Intergenic (ATA)n|Simple_repeat|Simple_repeat -25133 NM_001206901 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 180.667-49 chr9 95316899 95317019 + 2 NA intron (NM_001243744, intron 1 of 13) CpG 295 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 477.833-2 chr18 45620792 45621102 + 2 NA intron (NM_007163, intron 1 of 19) intron (NM_007163, intron 1 of 19) 5471 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 357.5 chr10 110304794 110305214 + 2 NA promoter-TSS (NM_005871) promoter-TSS (NM_005871) -84 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 500-3 chr14 21860014 21860503 + 2 NA Intergenic Intergenic -189241 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 311.001-2 chr6 151556844 151557098 + 2 NA intron (NM_025059, intron 5 of 10) L1MA4A|LINE|L1 62954 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 338-11 chr6 117346124 117346355 + 2 NA intron (NM_002944, intron 26 of 42) intron (NM_002944, intron 26 of 42) 79616 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 423.833-4 chr12 48618008 48618349 + 2 NA Intergenic Intergenic 36340 NR_002968 677815 Hs.689717 NR_002968 ENSG00000221491 SNORA2C ACA34|MIR1291|SNORA34 small nucleolar RNA, H/ACA box 2C snoRNA 338.667 chr1 112677054 112677284 + 2 NA intron (NM_001321324, intron 2 of 20) intron (NM_001321324, intron 2 of 20) 2431 NM_001369507 4343 Hs.514941 NM_020963 ENSG00000155363 MOV10 fSAP113|gb110 Mov10 RISC complex RNA helicase protein-coding 281-27 chr8 120075627 120075834 + 2 NA Intergenic Intergenic -49372 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 226.333-19 chr5 57774787 57775121 + 2 NA Intergenic Intergenic 124208 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 662.667-2 chr16 87768918 87769797 + 2 NA intron (NR_120309, intron 3 of 3) intron (NR_120309, intron 3 of 3) -3371 NR_147833 54758 Hs.123450 NM_017566 ENSG00000104731 KLHDC4 - kelch domain containing 4 protein-coding 423.334-3 chr20 40651227 40651653 + 2 NA Intergenic L1ME4c|LINE|L1 37796 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 270.833-5 chr14 29589886 29590098 + 2 NA intron (NM_001330069, intron 17 of 18) Charlie10|DNA|hAT-Charlie 337104 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 416.666-2 chr3 128534701 128535060 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 27045 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 358.667-7 chr4 33560813 33560995 + 2 NA Intergenic Intergenic 478989 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 176.667-45 chr4 159313974 159314156 + 2 NA intron (NM_001351727, intron 2 of 24) intron (NM_001351727, intron 2 of 24) 46256 NM_001351728 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 237.5-4 chr1 65036683 65036891 + 2 NA intron (NM_001321853, intron 2 of 26) L1M5|LINE|L1 21055 NR_037443 100500854 NR_037443 ENSG00000265996 MIR3671 - microRNA 3671 ncRNA 782.833-4 chr9 84667444 84668468 + 2 NA promoter-TSS (NM_001291937) promoter-TSS (NM_001291937) -502 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 198.5-5 chr1 170239675 170239812 + 2 NA intron (NR_146891, intron 2 of 4) intron (NR_146891, intron 2 of 4) 44465 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 401.334-2 chr8 13687845 13688170 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 58317 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 442-4 chr15 83615688 83615926 + 2 NA intron (NM_001324182, intron 9 of 9) intron (NM_001324182, intron 9 of 9) -38316 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 184.667-44 chr6 69514009 69514302 + 2 NA Intergenic L1PA16|LINE|L1 282311 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 274.667-5 chr10 124389315 124389670 + 2 NA Intergenic CpG 29431 NM_001322971 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 419.667-3 chr14 54910904 54911275 + 2 NA Intergenic Intergenic -8263 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 301-22 chr5 73027331 73027553 + 2 NA intron (NM_001146032, intron 7 of 24) L1MD|LINE|L1 71401 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 413.333-7 chr2 232988220 232988729 + 2 NA intron (NM_019850, intron 1 of 14) L1ME4b|LINE|L1 -24140 NR_136325 101928881 Hs.570311 NR_136325 ENSG00000222001 LOC101928881 - uncharacterized LOC101928881 ncRNA 338.333 chr10 76126373 76126634 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 343742 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 529.5 chr2 119407073 119407471 + 2 NA Intergenic Intergenic -24582 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 496.834 chr12 120713740 120714126 + 2 NA intron (NM_001080533, intron 2 of 4) intron (NM_001080533, intron 2 of 4) 3475 NM_001080533 84747 Hs.127610 NM_032661 ENSG00000175970 UNC119B POC7B unc-119 lipid binding chaperone B protein-coding 676.667 chr1 218338995 218339705 + 2 NA Intergenic Intergenic -5934 NM_001135599 7042 Hs.133379 NM_003238 ENSG00000092969 TGFB2 G-TSF|LDS4|TGF-beta2 transforming growth factor beta 2 protein-coding 380.667-5 chr4 39953472 39953860 + 2 NA intron (NM_001100399, intron 2 of 32) AluJb|SINE|Alu 24245 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 288.833-10 chr2 216023214 216023515 + 2 NA Intergenic Intergenic -9813 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 301.333-22 chr9 34314551 34315033 + 2 NA intron (NM_194313, intron 1 of 12) L1ME4b|LINE|L1 14476 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 344.5-11 chr22 26702707 26703115 + 2 NA intron (NR_110543, intron 1 of 5) intron (NR_110543, intron 1 of 5) 30068 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 199.667-52 chrX 93814664 93814919 + 2 NA Intergenic L1MA2|LINE|L1 140585 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 482-2 chr11 13140358 13141005 + 2 NA Intergenic Intergenic 131365 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 240-23 chr15 92117453 92117689 + 2 NA intron (NR_135775, intron 4 of 10) intron (NR_135775, intron 4 of 10) 263267 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 206-10 chr13 93117064 93117235 + 2 NA Intergenic Intergenic 71808 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 483.5 chr1 91404279 91404860 + 2 NA intron (NM_001017975, intron 1 of 38) CpG 268 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 415.667-2 chr1 225987461 225987869 + 2 NA intron (NM_152608, intron 6 of 6) MER104|DNA|TcMar-Tc2 11678 NM_152608 163859 Hs.520192 NM_152608 ENSG00000143751 SDE2 C1orf55|dJ671D7.1 SDE2 telomere maintenance homolog protein-coding 369.667 chr1 119358329 119358594 + 2 NA Intergenic Intergenic -10324 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 273-13 chr18 62484595 62484827 + 2 NA Intergenic Intergenic -38314 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 214.833-12 chr3 71954138 71954255 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 146259 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 593.333-2 chr8 78431626 78432722 + 2 NA Intergenic Intergenic -84166 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 246.833-10 chr4 184372669 184372813 + 2 NA intron (NR_125934, intron 2 of 5) MLT2A2|LTR|ERVL 9565 NR_125933 102723766 Hs.432281 NR_125933 ENSG00000249096 LINC02362 - long intergenic non-protein coding RNA 2362 ncRNA 394.167-9 chr4 84798078 84798340 + 2 NA intron (NM_014991, intron 17 of 67) intron (NM_014991, intron 17 of 67) -167407 NR_152773 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 407.5 chr1 36285348 36286040 + 2 NA intron (NM_001321471, intron 4 of 12) intron (NM_001321471, intron 4 of 12) -20674 NM_001162530 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 261.333-13 chr5 36871240 36871421 + 2 NA TTS (NR_046262) TTS (NR_046262) 5364 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 447-5 chr22 31381215 31381487 + 2 NA Intergenic AluSx|SINE|Alu -18253 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 288.5-13 chr18 1622272 1622593 + 2 NA Intergenic L1MC3|LINE|L1 -262803 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 445.5-5 chr3 48439523 48440198 + 2 NA promoter-TSS (NM_015933) promoter-TSS (NM_015933) 259 NM_001256968 79714 Hs.187657 NM_024661 ENSG00000164051 CCDC51 - coiled-coil domain containing 51 protein-coding 297.166-5 chr6 167846352 167846735 + 2 NA intron (NM_001291964, intron 1 of 32) intron (NM_001291964, intron 1 of 32) 18908 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4|l-afadin afadin, adherens junction formation factor protein-coding 402.167-13 chr6 35472176 35472676 + 2 NA Intergenic MIRb|SINE|MIR 1918 NR_106961 102465668 NR_106961 ENSG00000276712 MIR7111 hsa-mir-7111 microRNA 7111 ncRNA 416-7 chr4 177554936 177555202 + 2 NA Intergenic Intergenic -112566 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 467-7 chr5 119935617 119935975 + 2 NA Intergenic L1MEc|LINE|L1 306237 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 472.5-4 chr2 11174842 11175190 + 2 NA intron (NR_104231, intron 7 of 7) intron (NR_104231, intron 7 of 7) 19549 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 940-2 chr3 52287619 52288374 + 2 NA TTS (NR_046719) TTS (NR_046719) 168 NR_026702 132158 Hs.415312 NM_145262 ENSG00000168237 GLYCTK HBEBP2|HBEBP4|HBeAgBP4A glycerate kinase protein-coding 614.167-2 chr14 99982234 99982868 + 2 NA intron (NM_001330221, intron 1 of 13) intron (NM_001330221, intron 1 of 13) 11129 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 256-17 chr20 40064038 40064240 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 59678 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 282.667-29 chr9 69753346 69753648 + 2 NA intron (NM_001099666, intron 1 of 7) intron (NM_001099666, intron 1 of 7) 6514 NR_159515 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 263.333-21 chr6 49423932 49424216 + 2 NA Intergenic Intergenic 39179 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 527.5-6 chr6 138588581 138589071 + 2 NA Intergenic Intergenic -16257 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 279.667-19 chr4 53193245 53193448 + 2 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 172715 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 394.167-5 chr10 91821590 91821991 + 2 NA intron (NM_025235, intron 6 of 26) L2c|LINE|L2 23364 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 234-22 chr2 88928223 88928417 + 2 NA Intergenic Intergenic 115950 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 278-5 chr10 17877756 17877969 + 2 NA intron (NM_002438, intron 17 of 29) intron (NM_002438, intron 17 of 29) 32755 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 393.167-9 chr7 157387367 157387760 + 2 NA intron (NM_058246, intron 8 of 9) intron (NM_058246, intron 8 of 9) 50559 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 442-6 chr6 155812340 155812659 + 2 NA Intergenic Intergenic -134298 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 236.333-23 chr4 121050443 121050670 + 2 NA intron (NM_024574, intron 1 of 3) intron (NM_024574, intron 1 of 3) 21979 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 381-8 chr2 57089749 57090018 + 2 NA Intergenic Intergenic -817768 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 419.333-4 chr2 72864349 72864633 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -22917 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 300-24 chr9 132935966 132936157 + 2 NA intron (NM_000368, intron 1 of 22) L2c|LINE|L2 8555 NM_001162426 7248 Hs.370854 NM_000368 ENSG00000165699 TSC1 LAM|TSC TSC complex subunit 1 protein-coding 261-19 chr4 150171098 150171237 + 2 NA intron (NM_001040260, intron 2 of 15) intron (NM_001040260, intron 2 of 15) 92722 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 454-10 chr5 17705407 17705708 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -49919 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 494.5-2 chr10 5432185 5432477 + 2 NA intron (NM_001047160, intron 3 of 11) L1MC5|LINE|L1 -14220 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 606-2 chr20 45316339 45316796 + 2 NA exon (NM_001281448, exon 11 of 12) exon (NM_001281448, exon 11 of 12) -8038 NM_003833 8785 Hs.278489 NM_003833 ENSG00000124159 MATN4 - matrilin 4 protein-coding 211-20 chr18 68621803 68621974 + 2 NA Intergenic Intergenic 93220 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 332.333-8 chr18 52904021 52904299 + 2 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -332941 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 519 chr3 196708235 196708706 + 2 NA intron (NM_032898, intron 2 of 2) MIRb|SINE|MIR 3780 NM_032898 84984 Hs.282800 NM_032898 ENSG00000174007 CEP19 C3orf34|MOSPGF centrosomal protein 19 protein-coding 334.666 chr1 6204789 6205401 + 2 NA intron (NR_125997, intron 2 of 2) intron (NR_125997, intron 2 of 2) 685 NR_125997 102724450 Hs.669107 NR_125997 ENSG00000226944 LOC102724450 - uncharacterized LOC102724450 ncRNA 432.667-2 chr12 19980654 19980985 + 2 NA Intergenic Intergenic -33866 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 406.833-2 chr14 30655980 30656428 + 2 NA intron (NM_016106, intron 10 of 24) L2a|LINE|L2 33885 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 299.167-20 chr8 136818728 136818918 + 2 NA intron (NR_147196, intron 4 of 5) L1MEc|LINE|L1 288025 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 434.333-3 chr13 103188653 103188906 + 2 NA Intergenic Intergenic -122362 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 229.5-9 chr14 64907365 64907538 + 2 NA Intergenic Intergenic -6910 NM_001204063 91612 Hs.731537 NM_145165 ENSG00000258289 CHURC1 C14orf52|My015|chch churchill domain containing 1 protein-coding 281-11 chr16 35759104 35759305 + 2 NA Intergenic ALR/Alpha|Satellite|centr 12652 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 302.666-3 chr14 39240764 39240991 + 2 NA intron (NM_001329214, intron 3 of 28) MIR|SINE|MIR 6962 NM_001329214 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 227.5-36 chrX 22332589 22332914 + 2 NA intron (NR_073010, intron 5 of 11) intron (NR_073010, intron 5 of 11) 59838 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 499.667 chr15 68924768 68925336 + 2 NA Intergenic Intergenic -5448 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 341-2 chr11 209360 209571 + 2 NA TTS (NR_106801) TTS (NR_106801) 129 NR_106801 102465445 NR_106801 ENSG00000283920 MIR6743 hsa-mir-6743 microRNA 6743 ncRNA 288-27 chr9 73322216 73322530 + 2 NA Intergenic MIR|SINE|MIR 170508 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 320.5-9 chr13 42115256 42115658 + 2 NA intron (NM_178009, intron 1 of 29) L2c|LINE|L2 -22585 NR_123715 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 362.166-3 chr3 38145014 38145361 + 2 NA Intergenic L1MB3|LINE|L1 6526 NM_001172567 4615 Hs.82116 NM_002468 ENSG00000172936 MYD88 MYD88D MYD88 innate immune signal transduction adaptor protein-coding 711.667 chr13 39612009 39612644 + 2 NA Intergenic Intergenic -9133 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 476.667 chr10 87867721 87868225 + 2 NA intron (NM_001304717, intron 2 of 9) intron (NM_001304717, intron 2 of 9) 4348 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 271.5-28 chr4 44719518 44719927 + 2 NA intron (NR_073094, intron 1 of 6) intron (NR_073094, intron 1 of 6) 6834 NM_138335 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 310-17 chr19 44509117 44509411 + 2 NA intron (NM_001102597, intron 11 of 11) L1MC4|LINE|L1 -8742 NM_001278508 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 447-4 chr2 143419139 143419584 + 2 NA intron (NM_018460, intron 6 of 13) L1ME4a|LINE|L1 289942 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 435.001-3 chr17 11297210 11297605 + 2 NA intron (NM_001173461, intron 2 of 3) MLT1J|LTR|ERVL-MaLR 55984 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 276.667-5 chr10 67492269 67492566 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -89007 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 336-18 chr6 44597096 44597327 + 2 NA Intergenic AluJr|SINE|Alu -45330 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 371.5-10 chr5 128214296 128214561 + 2 NA Intergenic Intergenic 130662 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 305-17 chr7 39575905 39576078 + 2 NA intron (NM_001282446, intron 2 of 2) L2b|LINE|L2 9587 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 175.667-20 chr15 81092370 81092541 + 2 NA Intergenic Intergenic -41815 NM_001353365 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 380-12 chr4 106211304 106211606 + 2 NA intron (NM_001290768, intron 21 of 26) intron (NM_001290768, intron 21 of 26) -104155 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 350.5-8 chr3 131862604 131862827 + 2 NA intron (NM_130808, intron 2 of 15) (TA)n|Simple_repeat|Simple_repeat 123216 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 184.666-6 chr5 110650645 110650831 + 2 NA intron (NM_001039763, intron 2 of 13) L1MC3|LINE|L1 75933 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 276.167-3 chr11 9920125 9920520 + 2 NA intron (NR_120539, intron 2 of 2) intron (NR_120539, intron 2 of 2) 81180 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 521.5 chr10 114698840 114699257 + 2 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -14045 NM_001322882 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 374-7 chr5 166049277 166049582 + 2 NA Intergenic Intergenic 876941 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 308.333-21 chr7 22561387 22561716 + 2 NA Intergenic Intergenic -1786 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 190.833-14 chr18 77059599 77059788 + 2 NA intron (NM_001025100, intron 3 of 3) intron (NM_001025100, intron 3 of 3) -42638 NM_002385 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 372-4 chr14 60666521 60667044 + 2 NA Intergenic AluJb|SINE|Alu -17305 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 429.333-4 chr18 4112058 4112494 + 2 NA intron (NM_001242761, intron 2 of 11) L1M4|LINE|L1 149923 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 360.167-2 chr17 15171613 15171873 + 2 NA Intergenic Intergenic -65556 NR_103559 94151 Hs.98684 NR_103559 CDRT8 - CMT1A duplicated region transcript 8 ncRNA 368.333-5 chr4 31793886 31794098 + 2 NA Intergenic Intergenic -203387 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 268.667-3 chr1 165717846 165718099 + 2 NA Intergenic Intergenic 19222 NR_036683 440700 Hs.568703 NR_036683 ENSG00000215838 LOC440700 - carbonic anhydrase 14 pseudogene pseudo 746.167 chr17 68759425 68760303 + 2 NA Intergenic Intergenic 131710 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 269-17 chr20 48611609 48611791 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 216299 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 262.5-22 chr4 179867222 179867495 + 2 NA Intergenic Intergenic 1291791 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 187-34 chr5 36449908 36450056 + 2 NA Intergenic Intergenic -148080 NM_145000 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 179.333-6 chr11 11161456 11161575 + 2 NA Intergenic Intergenic 191735 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 655.166 chr15 42084372 42085093 + 2 NA intron (NM_178034, intron 6 of 19) intron (NM_178034, intron 6 of 19) 9830 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 582.501-2 chr7 39652971 39653435 + 2 NA intron (NM_005402, intron 1 of 4) AluSg|SINE|Alu 29631 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 351-16 chr8 82546002 82546241 + 2 NA Intergenic L1M4a1|LINE|L1 -365983 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 357.333-4 chr10 58157226 58157676 + 2 NA Intergenic Intergenic 110443 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 240-39 chr4 56831139 56831315 + 2 NA Intergenic AluSx|SINE|Alu -9358 NM_021114 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 255.333-5 chr1 166433679 166433876 + 2 NA Intergenic Intergenic 56262 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 187.5-47 chrX 68808873 68808983 + 2 NA Intergenic Intergenic -20069 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 288.666-4 chr10 61897625 61898062 + 2 NA Intergenic Intergenic -3856 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 470.167 chr1 174023242 174023662 + 2 NA Intergenic Intergenic -30380 NM_001300852 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 225-19 chr2 207929631 207929888 + 2 NA intron (NM_001080475, intron 5 of 7) intron (NM_001080475, intron 5 of 7) 95768 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 377.833-4 chr2 29314883 29315195 + 2 NA intron (NM_004304, intron 8 of 28) intron (NM_004304, intron 8 of 28) -91139 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 507-6 chr3 9449743 9450347 + 2 NA intron (NM_001080517, intron 16 of 22) intron (NM_001080517, intron 16 of 22) 52345 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 439-3 chr2 72494274 72494638 + 2 NA intron (NR_135774, intron 15 of 19) intron (NR_135774, intron 15 of 19) 331577 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 712.166 chr2 147989550 147990236 + 2 NA intron (NM_001190879, intron 1 of 14) intron (NM_001190879, intron 1 of 14) 30844 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 409-5 chr2 155744871 155745097 + 2 NA Intergenic L1MA7|LINE|L1 509947 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 384-6 chr2 18717789 18718098 + 2 NA Intergenic (TGA)n|Simple_repeat|Simple_repeat -128363 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 447.667 chr10 58962820 58963254 + 2 NA Intergenic Intergenic -36481 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 481.667 chr20 33092400 33092839 + 2 NA exon (NM_182519, exon 9 of 16) exon (NM_182519, exon 9 of 16) 11107 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 270.5-6 chr11 11179253 11179498 + 2 NA Intergenic Intergenic 173875 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 436.666-4 chr7 107150138 107150876 + 2 NA intron (NM_002736, intron 6 of 10) intron (NM_002736, intron 6 of 10) -18454 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 249-16 chr2 24724139 24724378 + 2 NA intron (NM_001362950, intron 14 of 23) intron (NM_001362950, intron 14 of 23) -68857 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 482-8 chr3 25033633 25034013 + 2 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 204500 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 418.167 chr3 187220124 187220407 + 2 NA intron (NM_001879, intron 15 of 15) intron (NM_001879, intron 15 of 15) -12636 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 170.666-3 chr14 64684248 64684353 + 2 NA Intergenic MIRb|SINE|MIR -20124 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 259.5-17 chr2 101722408 101722657 + 2 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 24825 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 228-31 chr3 145183970 145184199 + 2 NA Intergenic L1ME1|LINE|L1 885101 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 208.833-30 chr8 117474376 117474552 + 2 NA Intergenic Intergenic -46249 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 307.333-10 chr5 115331873 115332219 + 2 NA Intergenic L1MDa|LINE|L1 -35392 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 758.667 chr11 4072658 4073164 + 2 NA intron (NM_001277962, intron 6 of 12) intron (NM_001277962, intron 6 of 12) -21774 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 330.167-11 chr8 139600895 139601244 + 2 NA non-coding (NR_104210, exon 4 of 4) non-coding (NR_104210, exon 4 of 4) 102054 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 577.833-4 chr9 125558040 125558647 + 2 NA intron (NM_001006619, intron 6 of 10) intron (NM_001006619, intron 6 of 10) 148865 NM_001006618 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 217.333-25 chr3 51805926 51806073 + 2 NA Intergenic Intergenic -11604 NR_038214 100506840 Hs.254808 NR_038213 ENSG00000224792 IQCF4 - IQ motif containing F5 pseudogene pseudo 343.833-7 chr2 238370728 238370985 + 2 NA intron (NM_001139490, intron 13 of 14) intron (NM_001139490, intron 13 of 14) 50312 NM_001139490 26146 Hs.631898 NM_015650 ENSG00000204104 TRAF3IP1 IFT54|MIP-T3|MIPT3|SLSN9 TRAF3 interacting protein 1 protein-coding 430-6 chr9 26815103 26815418 + 2 NA Intergenic L1MEc|LINE|L1 77542 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 259.334-8 chr8 35871373 35871629 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -161181 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 353.167-9 chr7 98959962 98960222 + 2 NA intron (NM_003496, intron 43 of 70) intron (NM_003496, intron 43 of 70) -53073 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 452.001 chr1 102274662 102274966 + 2 NA Intergenic L1MB7|LINE|L1 -277580 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 281.333-6 chr12 13524828 13525015 + 2 NA Intergenic Intergenic -148176 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 246.333-21 chr17 55348494 55349018 + 2 NA Intergenic Intergenic 73079 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 277-15 chr2 78736138 78736435 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 190755 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 189.334-12 chr5 131647695 131647842 + 2 NA intron (NM_133372, intron 16 of 17) AluSx|SINE|Alu -12539 NM_001164387 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 897.666 chr2 189762160 189763433 + 2 NA promoter-TSS (NR_102429) promoter-TSS (NR_102429) -4 NM_022353 64172 Hs.60772 NM_022353 ENSG00000128694 OSGEPL1 OSGEPL|Qri7 O-sialoglycoprotein endopeptidase like 1 protein-coding 240.5-15 chr20 11239641 11239847 + 2 NA Intergenic MER102c|DNA|hAT-Charlie 33639 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 323.5-5 chr16 8110031 8110241 + 2 NA Intergenic Intergenic 479702 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 319.667-7 chr2 116816626 116816937 + 2 NA Intergenic Intergenic -997910 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 312.833-2 chr10 83559419 83559790 + 2 NA Intergenic MIR|SINE|MIR 117485 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 708.833 chr1 234498958 234499560 + 2 NA Intergenic Intergenic -20080 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 486.667-6 chr8 89985769 89986260 + 2 NA Intergenic L1M5|LINE|L1 -1290 NM_001024688 4683 Hs.492208 NM_002485 ENSG00000104320 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 263.334-8 chr4 160728116 160728361 + 2 NA Intergenic Intergenic -950454 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 191-43 chr7 18176505 18176694 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -49290 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 224.5-28 chr3 143468632 143468791 + 2 NA intron (NM_173653, intron 11 of 15) intron (NM_173653, intron 11 of 15) 126465 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 346.667-13 chrX 12771369 12771731 + 2 NA Intergenic Intergenic -19805 NM_002765 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 386.5 chr10 69800307 69800537 + 2 NA Intergenic Intergenic -1484 NM_001368895 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 494.834 chr8 42412300 42412891 + 2 NA Intergenic Intergenic 20715 NM_005662 7419 Hs.699301 NM_005662 ENSG00000078668 VDAC3 HD-VDAC3|VDAC-3 voltage dependent anion channel 3 protein-coding 480.833 chr10 108360346 108360823 + 2 NA Intergenic Intergenic -291291 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 363-8 chr6 91987505 91987834 + 2 NA Intergenic L1M5|LINE|L1 -297241 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 295.001 chr10 19318532 19318818 + 2 NA intron (NM_001142308, intron 21 of 39) intron (NM_001142308, intron 21 of 39) 269874 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 464.166 chr4 123192753 123193223 + 2 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -203807 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 347.333-11 chr21 30047969 30048267 + 2 NA Intergenic UCON9|Unknown|Unknown -108066 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 311-22 chrX 13750053 13750369 + 2 NA intron (NM_001330209, intron 9 of 21) intron (NM_001330209, intron 9 of 21) 15463 NM_003611 8481 Hs.6483 NM_003611 ENSG00000046651 OFD1 71-7A|CXorf5|JBTS10|RP23|SGBS2 OFD1 centriole and centriolar satellite protein protein-coding 364.833-4 chr6 119204483 119204835 + 2 NA intron (NM_005907, intron 7 of 12) intron (NM_005907, intron 7 of 12) -55466 NM_001100411 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 268-7 chr10 22942529 22942854 + 2 NA intron (NM_001282747, intron 2 of 15) L1ME3|LINE|L1 14638 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 572.834-3 chr5 132272519 132272946 + 2 NA 3' UTR (NM_003687, exon 7 of 7) 3' UTR (NM_003687, exon 7 of 7) 15036 NM_003687 8572 Hs.424312 NM_003687 ENSG00000131435 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 485.667-3 chr15 69584389 69584731 + 2 NA Intergenic Intergenic -7640 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 284.334-8 chr9 86500771 86501047 + 2 NA Intergenic L1MCa|LINE|L1 -146499 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 355-10 chr3 177371229 177371492 + 2 NA Intergenic Arthur1A|DNA|hAT-Tip100 -70561 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 342.167-7 chr4 31815686 31816067 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -181503 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 389.5-5 chr5 66356230 66356529 + 2 NA Intergenic Intergenic -146933 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 185-7 chr1 234501204 234501363 + 2 NA Intergenic Intergenic -22104 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 316.834-2 chr2 221402112 221402436 + 2 NA Intergenic Intergenic 170030 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 165.333-40 chr6 35275977 35276142 + 2 NA intron (NM_001292032, intron 1 of 12) MIR|SINE|MIR 16324 NM_001292032 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 302-4 chr1 233335889 233336228 + 2 NA intron (NM_032435, intron 1 of 9) intron (NM_032435, intron 1 of 9) 8334 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 383.333-13 chrX 41690911 41691236 + 2 NA intron (NM_005300, intron 2 of 2) intron (NM_005300, intron 2 of 2) 2100 NM_001097579 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 302-6 chr12 57712463 57712678 + 2 NA intron (NM_001017956, intron 5 of 13) L1M4b|LINE|L1 -13670 NR_027032 100130776 Hs.656080 NR_027032 ENSG00000255737 AGAP2-AS1 PUNISHER AGAP2 antisense RNA 1 ncRNA 301-2 chr1 237222640 237222901 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 180586 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 367-10 chr17 53139989 53140282 + 2 NA Intergenic MIR|SINE|MIR 154630 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 454.5-4 chr20 38109810 38110323 + 2 NA Intergenic Intergenic 55204 NM_001323318 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 491.333 chr5 175885192 175885613 + 2 NA Intergenic L2b|LINE|L2 13824 NM_001008220 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 367-12 chr2 55669190 55669609 + 2 NA intron (NM_033109, intron 11 of 27) intron (NM_033109, intron 11 of 27) 24445 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 251-2 chr11 57402304 57402448 + 2 NA Intergenic Intergenic -11726 NM_002728 5553 Hs.512633 NM_002728 ENSG00000186652 PRG2 BMPG|MBP|MBP1|proMBP proteoglycan 2, pro eosinophil major basic protein protein-coding 333-4 chr14 73111880 73112203 + 2 NA intron (NM_021239, intron 16 of 18) intron (NM_021239, intron 16 of 18) -24466 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 362-17 chr7 49323023 49323274 + 2 NA Intergenic Intergenic 398601 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 408.167 chr1 186013945 186014230 + 2 NA intron (NM_031935, intron 30 of 106) L1MC3|LINE|L1 279696 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 466-5 chr5 39262220 39262504 + 2 NA intron (NM_001243093, intron 1 of 18) L1ME3Cz|LINE|L1 8287 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 381.5-8 chr3 102911225 102911562 + 2 NA Intergenic Intergenic 476378 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 205.5-32 chr6 10614233 10614341 + 2 NA intron (NM_145655, intron 1 of 2).2 MamRTE1|LINE|RTE-BovB 28527 NM_145655 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 593.167 chr12 74689017 74689517 + 2 NA Intergenic Intergenic 151432 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 340.334-7 chr19 28313709 28313919 + 2 NA Intergenic Intergenic -292874 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 488.5-3 chr2 143048320 143048642 + 2 NA 3' UTR (NM_003937, exon 14 of 14) 3' UTR (NM_003937, exon 14 of 14) -80938 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 343-9 chr4 45743573 45743903 + 2 NA Intergenic Intergenic 380316 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 611.333-3 chr3 98593734 98594298 + 2 NA promoter-TSS (NM_000097) promoter-TSS (NM_000097) -405 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 371-4 chr14 74094304 74094763 + 2 NA intron (NM_001024674, intron 2 of 5) AluJr|SINE|Alu 9580 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 746-3 chr9 83596663 83597464 + 2 NA Intergenic Intergenic -25986 NM_001256915 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 397-5 chr15 81263078 81263306 + 2 NA intron (NM_001352686, intron 3 of 18) intron (NM_001352686, intron 3 of 18) -33778 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 171-35 chr2 194166919 194167027 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -177296 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 864.666-2 chr3 44235922 44236712 + 2 NA Intergenic Intergenic -5569 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 257.834-4 chr17 60496337 60496492 + 2 NA intron (NM_001282476, intron 1 of 11) intron (NM_001282476, intron 1 of 11) 29826 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 205.833-3 chr10 51833141 51833339 + 2 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -133645 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 431.001 chr1 104780466 104781018 + 2 NA Intergenic Intergenic 707719 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 442.666-2 chr20 4720867 4721318 + 2 NA promoter-TSS (NM_012409) promoter-TSS (NM_012409) -817 NM_012409 23627 Hs.406696 NM_012409 ENSG00000171864 PRND DOPPEL|DPL|PrPLP|dJ1068H6.4 prion like protein doppel protein-coding 744.833 chr10 16843213 16843883 + 2 NA intron (NM_001081, intron 60 of 66) intron (NM_001081, intron 60 of 66) -26094 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 248.5-9 chr12 40980661 40980867 + 2 NA intron (NM_001843, intron 15 of 23) intron (NM_001843, intron 15 of 23) 72407 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 454-4 chr15 72599605 72600174 + 2 NA 3' UTR (NM_005744, exon 14 of 14) 3' UTR (NM_005744, exon 14 of 14) 12672 NR_030359 693215 NR_030359 ENSG00000283798 MIR630 MIRN630|hsa-mir-630 microRNA 630 ncRNA 445.334-2 chr1 235216838 235217118 + 2 NA intron (NR_135074, intron 16 of 24) intron (NR_135074, intron 16 of 24) -26862 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 278.666-9 chr3 70971054 70971284 + 2 NA intron (NR_146142, intron 17 of 19) intron (NR_146142, intron 17 of 19) 93755 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 435.5-7 chr9 28051346 28052105 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -477859 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 215-31 chr3 196130448 196130649 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -12088 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 186-5 chr11 25117803 25117961 + 2 NA Intergenic Intergenic 620829 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 403.834-3 chr17 48815254 48815556 + 2 NA intron (NM_001130918, intron 1 of 15) intron (NM_001130918, intron 1 of 15) 1685 NM_001366314 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 316.666-4 chr8 120454595 120454882 + 2 NA intron (NM_022045, intron 5 of 21) intron (NM_022045, intron 5 of 21) 9319 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 411-3 chr5 110450940 110451297 + 2 NA intron (NM_001039763, intron 12 of 13) MLT1J1|LTR|ERVL-MaLR 62797 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 258-10 chr14 45093923 45094133 + 2 NA intron (NM_017922, intron 1 of 13) L1M5|LINE|L1 9912 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 398-16 chr6 77412203 77412483 + 2 NA Intergenic Intergenic 51679 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 317.5-2 chr1 41492184 41492665 + 2 NA Intergenic Intergenic -7741 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 252.666-3 chr15 96446490 96446689 + 2 NA Intergenic Intergenic 112824 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 496.666 chr13 82473654 82474111 + 2 NA Intergenic Intergenic -1246899 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 499.167-2 chr7 66844658 66844945 + 2 NA promoter-TSS (NR_003934) promoter-TSS (NR_003934) 25 NR_003934 729156 Hs.709878 NR_003934 ENSG00000230583 GTF2IRD1P1 - GTF2I repeat domain containing 1 pseudogene 1 pseudo 179.667-50 chr8 106014975 106015079 + 2 NA intron (NR_125797, intron 1 of 4) L1MEc|LINE|L1 45476 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 415.999-2 chr12 109706921 109707309 + 2 NA Intergenic Intergenic -6710 NM_032829 84915 Hs.661785 NM_032829 ENSG00000139438 FAM222A C12orf34 family with sequence similarity 222 member A protein-coding 592.667-4 chr4 105471532 105472263 + 2 NA intron (NM_176869, intron 1 of 11) intron (NM_176869, intron 1 of 11) 2165 NM_176869 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 473.5-4 chr20 17682588 17683007 + 2 NA promoter-TSS (NM_004587) promoter-TSS (NM_004587) -514 NM_004587 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 340.667-4 chr11 31198527 31198718 + 2 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 171117 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 375.167-5 chr21 30860197 30860774 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 21095 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 524.834-3 chr4 46362667 46363362 + 2 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 26365 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 705.333 chr10 59906479 59907047 + 2 NA promoter-TSS (NM_005436) promoter-TSS (NM_005436) -207 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 498-2 chr10 43674415 43674771 + 2 NA non-coding (NR_038867, exon 5 of 5) non-coding (NR_038867, exon 5 of 5) -25712 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 344.667-16 chr9 103093411 103093621 + 2 NA Intergenic Intergenic 98183 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 275.833-17 chr3 48151593 48151795 + 2 NA Intergenic Intergenic 36723 NM_001789 993 Hs.437705 NM_001789 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 232-13 chr12 86144000 86144193 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) 112295 NM_001351289 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 751.833-2 chr7 135274245 135274895 + 2 NA Intergenic Intergenic 42591 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 402.834 chr1 27012878 27013340 + 2 NA promoter-TSS (NM_052943) promoter-TSS (NM_052943) -259 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 TENT5B FAM46B terminal nucleotidyltransferase 5B protein-coding 693.668 chr2 227766245 227766800 + 2 NA Intergenic Intergenic -47320 NM_001130046 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 385-6 chr2 178763858 178764149 + 2 NA intron (NM_133379, intron 43 of 45) intron (NM_133379, intron 43 of 45) -12923 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 356.666-8 chr8 85446656 85446862 + 2 NA intron (NM_005181, intron 6 of 6) MIRb|SINE|MIR 7900 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 277.333-11 chr12 5253761 5253929 + 2 NA Intergenic Ricksha|DNA|MULE-MuDR -10694 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 458.166 chr1 40152944 40153250 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 -8290 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 389.334-7 chr7 85303435 85303742 + 2 NA Intergenic MIRb|SINE|MIR -117534 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 373 chr1 225061752 225062133 + 2 NA intron (NM_001367479, intron 17 of 85) L1ME2|LINE|L1 132267 NM_001145154 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 378-17 chr5 44528544 44528873 + 2 NA Intergenic Intergenic -18426 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 1239.67 chr1 213122058 213123248 + 2 NA intron (NM_001349665, intron 4 of 10) intron (NM_001349665, intron 4 of 10) 71412 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 727.333 chr17 49695245 49695872 + 2 NA Intergenic Intergenic 12406 NM_005827 10237 Hs.154073 NM_005827 ENSG00000121073 SLC35B1 UGTREL1 solute carrier family 35 member B1 protein-coding 371.167-9 chr8 141750049 141750420 + 2 NA Intergenic L1ME1|LINE|L1 36079 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 443.667-3 chr11 74570480 74571134 + 2 NA Intergenic Intergenic -21775 NM_006591 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 555.333-2 chr17 7135843 7136632 + 2 NA Intergenic L1MB3|LINE|L1 -21426 NM_080912 433 Hs.654440 NM_001181 ENSG00000161944 ASGR2 ASGP-R2|ASGPR2|CLEC4H2|HBXBP|HL-2 asialoglycoprotein receptor 2 protein-coding 224.5-42 chr9 20879369 20879484 + 2 NA intron (NM_017794, intron 21 of 45) Ricksha_c|DNA|MULE-MuDR 92499 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 325.5-5 chr12 20567376 20567597 + 2 NA intron (NM_000921, intron 2 of 15) intron (NM_000921, intron 2 of 15) -4378 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 223.167-17 chr5 54889992 54890165 + 2 NA Intergenic MamGyp-int|LTR|Gypsy 95515 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 326.833 chr1 27322048 27322297 + 2 NA promoter-TSS (NR_037576) promoter-TSS (NR_037576) 27 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 270.833-9 chr3 103295967 103296141 + 2 NA Intergenic Intergenic 228062 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 5564.17 chr3 184560980 184561759 + 19.1667 NA promoter-TSS (NM_004443) promoter-TSS (NM_004443) -416 NM_004443 2049 Hs.2913 NM_004443 ENSG00000182580 EPHB3 EK2|ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 4019.34 chr6 41920942 41921515 + 17.1667 NA promoter-TSS (NM_004275) promoter-TSS (NM_004275) -89 NR_131160 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|SRB2|TRFP mediator complex subunit 20 protein-coding 5191.17 chr2 152025322 152026390 + 17.1667 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) -51878 NM_001330115 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 5498 chr10 101012738 101013885 + 17.1667 NA intron (NM_001195263, intron 11 of 16) L2b|LINE|L2 10814 NM_001318101 84445 Hs.523221 NM_032429 ENSG00000107816 LZTS2 LAPSER1 leucine zipper tumor suppressor 2 protein-coding 3609.51 chr1 47437476 47438015 + 17.1667 NA promoter-TSS (NR_126355) promoter-TSS (NR_126355) -428 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 5777.33 chr6 37018078 37019007 + 17.1667 NA intron (NM_173558, intron 9 of 15) intron (NM_173558, intron 9 of 15) 12887 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 4024.84 chr2 218979893 218980409 + 16.6667 NA TTS (NM_017521) TTS (NM_017521) 3867 NR_015390 151300 Hs.420716 NR_015390 LINC00608 - long intergenic non-protein coding RNA 608 ncRNA 3685.66 chr14 61475004 61475825 + 16.3333 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 94780 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 5255.17 chr5 59813022 59814536 + 16 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -44931 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 5012.5 chr14 69818178 69819506 + 16 NA Intergenic Intergenic 7082 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 2704.67 chr12 11486166 11487070 + 15.8333 NA promoter-TSS (NR_148969) promoter-TSS (NR_148969) 60 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 5176.5 chr5 142713028 142714005 + 15.8333 NA Intergenic Intergenic -15446 NM_001257205 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 7630 chr15 45457292 45459356 + 15.8333 NA Intergenic L1ME3A|LINE|L1 25274 NR_030599 100126311 NR_030599 ENSG00000284386 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 3983.83 chr4 30379806 30380925 + 15.6667 NA Intergenic L1PA17|LINE|L1 -340004 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 4588.67 chr9 35603561 35604430 + 15.5 NA Intergenic CpG -1267 NM_006285 7016 Hs.708096 NM_006285 ENSG00000107140 TESK1 - testis associated actin remodelling kinase 1 protein-coding 4185.66 chr22 41696705 41697768 + 15.3333 NA non-coding (NR_160905, exon 4 of 4) non-coding (NR_160905, exon 4 of 4) -2267 NM_152513 150365 Hs.116419 NM_152513 ENSG00000167077 MEI1 HYDM3|SPATA38 meiotic double-stranded break formation protein 1 protein-coding 4572.5 chr5 127492523 127493617 + 15.1667 NA Intergenic Intergenic -24570 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 3335.5 chr2 30711500 30712163 + 14.8333 NA Intergenic LTR41C|LTR|ERVL 95615 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 4050.33 chr11 35821941 35822884 + 14.8333 NA Intergenic Intergenic -121569 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 4873.5 chr11 86607736 86609052 + 14.6667 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 63804 NR_147831 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 3825.84 chr22 23281899 23282469 + 14.5 NA intron (NM_004327, intron 8 of 22) intron (NM_004327, intron 8 of 22) 19417 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 4244 chr14 64303374 64303965 + 14.5 NA intron (NM_001291712, intron 2 of 13) intron (NM_001291712, intron 2 of 13) -9259 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 4517.84 chr2 100261810 100263295 + 14.5 NA Intergenic Intergenic 54298 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 3188.83 chr15 66903450 66904334 + 14.5 NA Intergenic Intergenic 52623 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 5310.83 chr6 132279075 132280221 + 14.3333 NA Intergenic Intergenic 121827 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 5561.67 chr14 49586375 49587411 + 14.1667 NA promoter-TSS (NM_001030001) promoter-TSS (NM_001030001) 313 NR_002715 6029 NR_002715 ENSG00000276168 RN7SL1 7L1a|7SL|RN7SL|RNSRP1 RNA component of signal recognition particle 7SL1 scRNA 3923.34 chr10 60964113 60964968 + 14.1667 NA intron (NM_001350906, intron 2 of 12) L3b|LINE|CR1 -19814 NM_001350911 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 3562.17 chr2 18178581 18179242 + 14.1667 NA Intergenic Intergenic 300244 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 7876.84 chr5 17189391 17191139 + 14.1667 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -26558 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 3733 chr8 84625515 84626809 + 13.8333 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -79765 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 4746 chr20 49610665 49611517 + 13.8333 NA Intergenic L2a|LINE|L2 -42954 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 2026.67 chr12 100554661 100555381 + 13.8333 NA intron (NR_135146, intron 9 of 10) intron (NR_135146, intron 9 of 10) -18663 NM_001363672 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 4613.5 chr10 102132043 102133313 + 13.8333 NA promoter-TSS (NM_001288727) promoter-TSS (NM_001288727) -316 NM_001288727 23082 Hs.533551 NM_015062 ENSG00000148840 PPRC1 PRC PPARG related coactivator 1 protein-coding 3313.5 chr10 95693749 95694715 + 13.8333 NA promoter-TSS (NM_001143973) promoter-TSS (NM_001143973) -89 NM_001143973 26123 Hs.438991 NM_015631 ENSG00000119977 TCTN3 C10orf61|JBTS18|OFD4|TECT3 tectonic family member 3 protein-coding 3249 chr2 112048550 112049413 + 13.6667 NA Intergenic Intergenic -6288 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 2072.17 chr12 4855358 4855945 + 13.6667 NA Intergenic Intergenic 46475 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 4973.83 chr16 84738316 84739166 + 13.6667 NA intron (NR_073577, intron 2 of 11) intron (NR_073577, intron 2 of 11) 38741 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 3118.17 chr1 145891800 145892506 + 13.5 NA 3' UTR (NM_001303041, exon 26 of 26) 3' UTR (NM_001303041, exon 26 of 26) -6287 NM_001280799 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 7767.17 chr8 134905247 134906761 + 13.5 NA Intergenic Intergenic 56069 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 3496.16 chr22 28594501 28595489 + 13.3333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 84870 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 4179.67 chr16 6681656 6682711 + 13.3333 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -91626 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 3242.83 chr14 23469229 23469945 + 13.3333 NA promoter-TSS (NM_015514) promoter-TSS (NM_015514) -116 NM_015514 25983 Hs.9043 NM_015514 ENSG00000129460 NGDN C14orf120|CANu1|LCP5|NGD|lpd-2 neuroguidin protein-coding 3867.67 chr11 128157422 128158454 + 13.1667 NA Intergenic Intergenic -50828 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 5437.33 chr17 50200282 50201047 + 13.1667 NA intron (NM_000088, intron 1 of 50) CpG-11414 975 NM_000088 1277 Hs.172928 NM_000088 ENSG00000108821 COL1A1 EDSARTH1|EDSC|OI1|OI2|OI3|OI4 collagen type I alpha 1 chain protein-coding 3413.83 chr8 130675405 130676194 + 13 NA Intergenic MIRb|SINE|MIR -232125 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 6880.16 chr20 48620411 48621590 + 13 NA Intergenic Intergenic 206999 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 3376.17 chr18 4067926 4069257 + 12.8333 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 106238 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 3699.33 chr8 60233185 60233769 + 12.8333 NA intron (NR_135821, intron 3 of 9) intron (NR_135821, intron 3 of 9) 47923 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 2475 chr16 8567185 8567974 + 12.8333 NA intron (NR_110736, intron 2 of 3) MER20|DNA|hAT-Charlie 22259 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 3100.5 chr5 139765263 139765927 + 12.8333 NA Intergenic Intergenic -19372 NR_105052 101929696 Hs.147408 NR_105052 ENSG00000249131 PSD2-AS1 - PSD2 antisense RNA 1 ncRNA 3983.84 chr2 232605936 232606714 + 12.6667 NA intron (NM_001243252, intron 1 of 3) CpG 268 NM_001243252 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 3714 chr8 120421255 120422432 + 12.6667 NA intron (NM_014078, intron 4 of 6) intron (NM_014078, intron 4 of 6) 23307 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 7395 chr21 28744804 28746483 + 12.6667 NA Intergenic Intergenic 139724 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 2647.5 chr4 56836632 56837198 + 12.6667 NA Intergenic Intergenic -15046 NM_021114 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 4115.5 chr16 50805988 50807164 + 12.6667 NA promoter-TSS (NR_146573) promoter-TSS (NR_146573) -96 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 3341 chr11 32323277 32324295 + 12.6667 NA Intergenic Intergenic 76614 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 2823.84 chr4 140359737 140360567 + 12.5 NA intron (NM_032547, intron 2 of 4) intron (NM_032547, intron 2 of 4) 13240 NR_033939 100129858 Hs.660477 NR_033939 ENSG00000196951 SCOC-AS1 - SCOC antisense RNA 1 ncRNA 2788.34 chr14 67165553 67166808 + 12.5 NA intron (NM_001024218, intron 19 of 21) intron (NM_001024218, intron 19 of 21) -23260 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 3455.83 chr19 46542453 46543186 + 12.5 NA intron (NM_001370550, intron 1 of 2) intron (NM_001370550, intron 1 of 2) -46952 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 3137.83 chr7 51162597 51163384 + 12.5 NA intron (NM_015198, intron 5 of 12) Kanga1|DNA|TcMar-Tc2 153819 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 3509.33 chr2 169131571 169132545 + 12.5 NA intron (NM_004525, intron 77 of 78) intron (NM_004525, intron 77 of 78) 50951 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 2409.17 chr8 126809684 126810569 + 12.3333 NA Intergenic Intergenic -203028 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 3154.33 chr14 66358638 66359834 + 12.3333 NA Intergenic Intergenic -127135 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 2731.33 chr17 8383229 8383870 + 12.3333 NA promoter-TSS (NM_001315530) promoter-TSS (NM_001315530) -356 NM_000987 6154 Hs.482144 NM_000987 ENSG00000161970 RPL26 DBA11|L26 ribosomal protein L26 protein-coding 3261.83 chr16 86563506 86565022 + 12.3333 NA TTS (NR_125795) TTS (NR_125795) -2565 NM_005251 2303 Hs.436448 NM_005251 ENSG00000176692 FOXC2 FKHL14|LD|MFH-1|MFH1 forkhead box C2 protein-coding 2724.33 chr12 85923519 85924119 + 12.3333 NA Intergenic Intergenic 49524 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 6633.5 chr8 135465497 135466822 + 12.3333 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 8703 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 4935 chr4 103933822 103935089 + 12.3333 NA Intergenic Intergenic -214470 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 3034.67 chr14 60625289 60625972 + 12.1667 NA Intergenic Intergenic -13586 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 3099.33 chr8 100563848 100564464 + 12.1667 NA Intergenic Intergenic -4397 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 4079.5 chr17 49032289 49033216 + 12.1667 NA intron (NM_001160423, intron 5 of 12) intron (NM_001160423, intron 5 of 12) 35367 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 3108.67 chr6 50128225 50129200 + 12.1667 NA Intergenic Intergenic -78783 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 2926.83 chr12 77925560 77926368 + 12 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 95070 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 3991.5 chr6 41027225 41028512 + 12 NA 3' UTR (NM_173561, exon 9 of 9) 3' UTR (NM_173561, exon 9 of 9) -4588 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 2659.83 chr17 19362434 19363394 + 11.8333 NA promoter-TSS (NM_001321214) promoter-TSS (NM_001321214) -176 NM_001243473 27077 Hs.309467 NM_015681 ENSG00000108641 B9D1 B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1 B9 domain containing 1 protein-coding 3824 chr1 203487277 203488862 + 11.8333 NA 3' UTR (NM_002725, exon 3 of 3) 3' UTR (NM_002725, exon 3 of 3) -6084 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 5383.66 chr5 163407572 163409234 + 11.8333 NA Intergenic Intergenic -29168 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 2469.17 chr14 61837181 61838194 + 11.8333 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 24984 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 2735.84 chr2 218300963 218301622 + 11.6667 NA intron (NM_015488, intron 2 of 9) intron (NM_015488, intron 2 of 9) -8715 NM_001321436 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 2427.5-2 chr7 36291609 36292084 + 11.6667 NA intron (NM_030636, intron 6 of 7) intron (NM_030636, intron 6 of 7) 75394 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 4412.17 chr11 113773543 113774490 + 11.6667 NA promoter-TSS (NM_004724) promoter-TSS (NM_004724) -324 NM_004724 9183 Hs.503886 NM_004724 ENSG00000086827 ZW10 HZW10|KNTC1AP zw10 kinetochore protein protein-coding 4944.33 chr19 45478130 45479542 + 11.6667 NA Intergenic Intergenic 10840 NM_001114171 2354 Hs.590958 NM_006732 ENSG00000125740 FOSB AP-1|G0S3|GOS3|GOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding 2746 chr2 102839505 102840537 + 11.6667 NA Intergenic Intergenic 55701 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 3347.84 chr8 120808309 120809543 + 11.6667 NA intron (NM_021021, intron 1 of 6) MamRep1879|DNA|hAT-Tip100? 3120 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 3778.34 chr1 96966141 96967296 + 11.6667 NA Intergenic Intergenic -129205 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 5082.33 chr6 50815379 50816561 + 11.6667 NA Intergenic Intergenic -2901 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 7406.67 chr12 9750041 9751923 + 11.6667 NA Intergenic Intergenic 9919 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 3054.5 chr20 57495163 57496170 + 11.5 NA TTS (NM_001269043) TTS (NM_001269043) 29201 NM_001269044 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 1796.17-2 chr7 35537346 35538000 + 11.5 NA Intergenic Intergenic 157462 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 3902 chr6 53978482 53980035 + 11.5 NA intron (NR_125842, intron 1 of 3) L2a|LINE|L2 -19632 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 2133.17 chr2 72150279 72151135 + 11.5 NA Intergenic Intergenic -2845 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 3300.17 chr7 31442901 31443946 + 11.5 NA Intergenic Intergenic -70648 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 2966.83 chr19 39793065 39793433 + 11.5 NA Intergenic Intergenic 16655 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 5488.5 chr2 130797392 130798560 + 11.5 NA Intergenic CpG -38938 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 2041.33 chr14 70817595 70818138 + 11.5 NA Intergenic Intergenic -8353 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 3075.83 chr4 75573332 75574077 + 11.3333 NA Intergenic Intergenic 17638 NM_001206981 152816 Hs.24510 NM_178497 ENSG00000174792 ODAPH AI2A4|C4orf26 odontogenesis associated phosphoprotein protein-coding 2667.5 chr6 49531560 49532675 + 11.3333 NA Intergenic Intergenic -18551 NM_001145652 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 2522.17 chr17 43677855 43678471 + 11.3333 NA Intergenic MIRb|SINE|MIR -16241 NM_004527 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 3738.83 chr11 116275878 116277016 + 11.3333 NA Intergenic Intergenic -362975 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 2603.83 chr8 116887607 116888116 + 11.3333 NA Intergenic Intergenic -12995 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 4004 chr8 118414530 118415445 + 11.3333 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -206014 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 3292.17 chr8 80084920 80085879 + 11.3333 NA intron (NM_001025253, intron 1 of 7) Helitron3Na_Mam|RC|Helitron -4568 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 2929.84 chr9 21789387 21790126 + 11.3333 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -12880 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 2953 chr2 189660744 189661481 + 11.3333 NA promoter-TSS (NM_001353497) promoter-TSS (NM_001353497) -287 NM_001353497 54529 Hs.101364 NM_019048 ENSG00000138381 ASNSD1 NBLA00058|NS3TP1 asparagine synthetase domain containing 1 protein-coding 2328 chr9 98848262 98849776 + 11.3333 NA exon (NM_024642, exon 10 of 10) exon (NM_024642, exon 10 of 10) 41349 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 2710.16 chr2 120695293 120695982 + 11.3333 NA Intergenic Intergenic -40231 NM_001371271 3784.5 chr11 130433954 130435570 + 11.1667 NA Intergenic Intergenic -6153 NM_007037 11095 Hs.271605 NM_007037 ENSG00000134917 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif 8 protein-coding 2786.17 chr14 49497611 49498382 + 11.1667 NA Intergenic Intergenic 88384 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 4844.17 chr1 176896923 176898209 + 11.1667 NA intron (NM_207108, intron 16 of 21) intron (NM_207108, intron 16 of 21) 131879 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 3298.83 chr1 100920873 100921703 + 11.1667 NA intron (NM_133496, intron 7 of 10) intron (NM_133496, intron 7 of 10) 25198 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 3344 chr2 147910709 147911548 + 11.1667 NA intron (NM_001278579, intron 5 of 11) intron (NM_001278579, intron 5 of 11) 66099 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 2692.34 chr11 60265103 60265867 + 11.1667 NA Intergenic Intergenic -15181 NM_024021 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 2593 chr5 43660926 43661523 + 11.1667 NA intron (NM_012343, intron 17 of 21) intron (NM_012343, intron 17 of 21) -57994 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 3064.67 chr10 22988672 22990202 + 11.1667 NA intron (NM_001282745, intron 10 of 18) intron (NM_001282745, intron 10 of 18) 61384 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 5021.5 chr1 204806870 204808787 + 11.1667 NA Intergenic MER112|DNA|hAT-Charlie -20824 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 2583.83 chr1 152461253 152462216 + 11 NA Intergenic Intergenic -47471 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 4293 chr11 17730694 17731456 + 11 NA Intergenic Intergenic -4873 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 2964 chr3 33372572 33373496 + 11 NA intron (NM_012157, intron 5 of 14) intron (NM_012157, intron 5 of 14) 67344 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 1903 chr1 112716057 112717027 + 11 NA Intergenic Intergenic -1214 NM_005167 333926 Hs.655231 NM_005167 ENSG00000155367 PPM1J PP2CZ|PP2Czeta|PPP2CZ protein phosphatase, Mg2+/Mn2+ dependent 1J protein-coding 2891 chr1 215526490 215527188 + 11 NA Intergenic Intergenic -40465 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 3840.33 chr14 53295740 53296687 + 11 NA Intergenic Intergenic 142859 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 4626 chr7 26197739 26199142 + 11 NA intron (NM_031243, intron 1 of 11) intron (NM_031243, intron 1 of 11) 2306 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 2405.5 chr8 131804106 131804880 + 11 NA Intergenic Intergenic -99600 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 2092.17 chr2 25129356 25129653 + 11 NA intron (NM_014971, intron 6 of 22) intron (NM_014971, intron 6 of 22) 39076 NM_001319204 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 2695.01 chr1 152870647 152871757 + 11 NA Intergenic LTR41B|LTR|ERVL -7120 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 2178.5 chr8 139340856 139341403 + 10.8333 NA Intergenic Intergenic 361994 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 2670.83 chr2 61917720 61918452 + 10.8333 NA intron (NM_152516, intron 1 of 2) intron (NM_152516, intron 1 of 2) 12444 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 1513 chr2 18435178 18435775 + 10.8333 NA Intergenic L2|LINE|L2 125177 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 4524.5 chr22 24757882 24759420 + 10.8333 NA intron (NM_001008496, intron 3 of 20) intron (NM_001008496, intron 3 of 20) -5850 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 2759.5 chr14 61461484 61462181 + 10.8333 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 108362 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 3842.17 chr18 3665880 3666953 + 10.8333 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 62679 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 1772.5 chr7 31782158 31783121 + 10.6667 NA TTS (NM_001322058) TTS (NM_001322058) 95424 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 1870 chr12 6037995 6038699 + 10.6667 NA intron (NM_000552, intron 18 of 51) intron (NM_000552, intron 18 of 51) 1836 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 5629.34 chr6 52662860 52664649 + 10.6667 NA promoter-TSS (NR_024403) promoter-TSS (NR_024403) -647 NR_024405 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 2567.67 chr19 49097534 49098198 + 10.6667 NA intron (NM_001301069, intron 4 of 9) intron (NM_001301069, intron 4 of 9) 12415 NM_003089 6625 Hs.467097 NM_003089 ENSG00000104852 SNRNP70 RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP small nuclear ribonucleoprotein U1 subunit 70 protein-coding 2993.33 chr2 143033329 143034536 + 10.6667 NA intron (NM_001199241, intron 13 of 14) intron (NM_001199241, intron 13 of 14) -95487 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 2831.33-2 chr5 128905071 128905919 + 10.6667 NA Intergenic Intergenic -59632 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 2221.84 chr3 87350368 87350874 + 10.6667 NA Intergenic L2c|LINE|L2 -74037 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 2840.83 chr10 97406906 97407646 + 10.6667 NA Intergenic Intergenic -5906 NM_001145114 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 2721.84 chr20 44080670 44081212 + 10.6667 NA Intergenic Intergenic 106247 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 2865.33 chr12 8890334 8891275 + 10.6667 NA Intergenic Intergenic -23705 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 5026.83 chr12 3299703 3300912 + 10.6667 NA non-coding (NR_148995, exon 10 of 12) non-coding (NR_148995, exon 10 of 12) 65815 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 1148.5 chr1 209435859 209436319 + 10.5 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 3956 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 1371.67 chr7 41940688 41941352 + 10.5 NA Intergenic Intergenic -237930 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 3198.83 chr2 27279814 27280622 + 10.5 NA non-coding (NR_130126, exon 3 of 4) non-coding (NR_130126, exon 3 of 4) -2211 NM_032546 57159 Hs.516036 NM_032546 ENSG00000138100 TRIM54 MURF|MURF-3|RNF30|muRF3 tripartite motif containing 54 protein-coding 2970.17 chr18 12271583 12272145 + 10.5 NA intron (NM_001279, intron 3 of 4) CpG 17503 NR_134607 1149 Hs.249129 NM_001279 ENSG00000176194 CIDEA CIDE-A cell death inducing DFFA like effector a protein-coding 3032.33 chr7 36128140 36129004 + 10.5 NA Intergenic Intergenic -24682 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 2932.17 chr8 112800524 112801470 + 10.5 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 157504 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 7041.67 chr8 89983567 89985192 + 10.5 NA intron (NM_001024688, intron 1 of 16) CpG 292 NM_002485 4683 Hs.492208 NM_002485 ENSG00000104320 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 3252.67 chr8 130129263 130130014 + 10.5 NA intron (NM_001362925, intron 16 of 29) intron (NM_001362925, intron 16 of 29) -44870 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 3978.17 chr8 54169049 54170093 + 10.5 NA Intergenic Intergenic 34330 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 3310.83 chr11 82905694 82906964 + 10.3333 NA intron (NM_001363481, intron 1 of 4) intron (NM_001363481, intron 1 of 4) -4589 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 2912.83 chr11 77046678 77048084 + 10.3333 NA Intergenic AluJb|SINE|Alu 12983 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 4006.83 chr5 69042349 69043515 + 10.3333 NA Intergenic Intergenic -13005 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 2284.17 chr11 63023992 63024787 + 10.3333 NA Intergenic L1MB4|LINE|L1 -8544 NM_001184733 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 5196.17 chr14 63640975 63642472 + 10.3333 NA 5' UTR (NM_001258272, exon 1 of 3) 5' UTR (NM_001258272, exon 1 of 3) 148 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 2503.83 chr5 95846952 95847911 + 10.3333 NA intron (NR_157807, intron 2 of 2) intron (NR_157807, intron 2 of 2) -4801 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 2337.5 chr18 3280995 3281935 + 10.3333 NA Intergenic Intergenic 18746 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 2221.66 chr2 88671779 88672394 + 10.3333 NA Intergenic (TACA)n|Simple_repeat|Simple_repeat -19587 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 4329.83 chr2 106542555 106543406 + 10.3333 NA intron (NM_001368307, intron 5 of 5) intron (NM_001368307, intron 5 of 5) 55616 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 2903.83 chr1 75203448 75204202 + 10.1667 NA TTS (NM_152697) TTS (NM_152697) 69437 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 3418.33 chr22 25447587 25448478 + 10.1667 NA promoter-TSS (NR_033733) promoter-TSS (NR_033733) -55 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 2734.33 chr12 40946362 40947030 + 10.1667 NA intron (NM_001256064, intron 14 of 15) intron (NM_001256064, intron 14 of 15) 38339 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 1954.5 chr2 30164676 30165499 + 10.1667 NA Intergenic Intergenic 18080 NM_016061 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 1998.67 chr22 42779808 42780672 + 10.1667 NA Intergenic Intergenic -58939 NM_001318038 53947 Hs.105956 NM_017436 ENSG00000128274 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase (P blood group) protein-coding 4269.5 chr3 101573359 101574467 + 10.1667 NA promoter-TSS (NM_020357) promoter-TSS (NM_020357) -181 NR_135230 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 3374.17 chr22 26367207 26368306 + 10.1667 NA intron (NM_001184775, intron 13 of 15) Kanga1b|DNA|TcMar-Tc2 -61504 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 7340.17 chr1 119674630 119676260 + 10.1667 NA Intergenic Intergenic -27179 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 3357.17 chr14 51282920 51283677 + 10.1667 NA Intergenic Intergenic 43051 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 3989 chr8 80612149 80613847 + 10.1667 NA Intergenic Intergenic 126772 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 2652 chr1 39719921 39720666 + 10.1667 NA Intergenic Intergenic -18552 NM_001319293 10450 Hs.524690 NM_006112 ENSG00000084072 PPIE CYP-33|CYP33 peptidylprolyl isomerase E protein-coding 1684.84 chr12 57459001 57459366 + 10.1667 NA promoter-TSS (NM_001167609) promoter-TSS (NM_001167609) -602 NM_005269 2735 Hs.632702 NM_005269 ENSG00000111087 GLI1 GLI|PAPA8|PPD1 GLI family zinc finger 1 protein-coding 3386.83 chr22 26359937 26361332 + 10.1667 NA intron (NM_001184777, intron 12 of 14) intron (NM_001184777, intron 12 of 14) -68626 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 2467.67 chr6 75893120 75893834 + 10.1667 NA intron (NM_001300899, intron 28 of 32) intron (NM_001300899, intron 28 of 32) 144238 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 2796.01 chr15 72670754 72671226 + 10.1667 NA Intergenic Intergenic -15189 NM_001252678 585 Hs.208681 NM_033028 ENSG00000140463 BBS4 - Bardet-Biedl syndrome 4 protein-coding 4294.67 chr17 32461453 32462889 + 10.1667 NA intron (NM_002815, intron 3 of 13) intron (NM_002815, intron 3 of 13) 17661 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 2680 chr14 34322889 34323628 + 10 NA Intergenic Intergenic 138982 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 4286.67 chr10 23157789 23159268 + 10 NA Intergenic Intergenic -33784 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 2340.83 chr7 6348683 6349438 + 10 NA promoter-TSS (NM_001037163) promoter-TSS (NM_001037163) -93 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 5774.67 chr14 20970315 20972062 + 10 NA Intergenic Intergenic 15701 NM_002934 6036 Hs.728 NM_002934 ENSG00000169385 RNASE2 EDN|RAF3|RNS2 ribonuclease A family member 2 protein-coding 3828.67 chr14 54563396 54564839 + 10 NA Intergenic Intergenic -3495 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 3474.83 chr12 14167007 14168046 + 10 NA Intergenic MIRb|SINE|MIR -187170 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 2940.5 chr14 20690881 20691646 + 10 NA intron (NM_194431, intron 1 of 1) intron (NM_194431, intron 1 of 1) 2499 NM_194431 6038 Hs.283749 NM_002937 ENSG00000258818 RNASE4 RAB1|RNS4 ribonuclease A family member 4 protein-coding 2203.83 chr20 47663701 47664387 + 10 NA intron (NM_198596, intron 15 of 20) intron (NM_198596, intron 15 of 20) 122020 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 2561.17 chr17 50094037 50094804 + 10 NA promoter-TSS (NM_001199898) promoter-TSS (NM_001199898) -317 NM_001199898 5164 Hs.256667 NM_002611 ENSG00000005882 PDK2 PDHK2|PDKII pyruvate dehydrogenase kinase 2 protein-coding 2813.83 chr17 70635734 70636905 + 10 NA Intergenic L1MD3|LINE|L1 466784 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 3094.83 chr8 121260319 121261359 + 10 NA Intergenic Intergenic -378507 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 4361.5 chr1 226064173 226065383 + 10 NA intron (NM_002107, intron 2 of 3) intron (NM_002107, intron 2 of 3) 2051 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 2545.83 chr17 60720011 60721221 + 10 NA intron (NM_001330413, intron 5 of 25) MER2|DNA|TcMar-Tigger 42765 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 295.166-3 chr14 103987912 103988153 + 1.83333 NA intron (NM_153046, intron 8 of 35) L1M4b|LINE|L1 -45503 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 305.833-9 chr18 7946619 7946849 + 1.83333 NA intron (NM_002845, intron 5 of 30) intron (NM_002845, intron 5 of 30) 379418 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 226.5-27 chr3 149731977 149732528 + 1.83333 NA Intergenic L2b|LINE|L2 -7464 NM_001348362 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 683.5-3 chr9 35815102 35815675 + 1.83333 NA promoter-TSS (NM_032593) promoter-TSS (NM_032593) -346 NM_032593 84681 Hs.70573 NM_032593 ENSG00000137133 HINT2 HIT-17 histidine triad nucleotide binding protein 2 protein-coding 431.333-4 chr21 24408024 24408461 + 1.83333 NA Intergenic Intergenic -20498 NR_135520 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 582 chr15 91849477 91850071 + 1.83333 NA Intergenic Intergenic -3934 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 407.166-3 chr5 33336917 33337301 + 1.83333 NA Intergenic Intergenic -103587 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 548.334-2 chr11 102010610 102011264 + 1.83333 NA Intergenic HAL1|LINE|L1 -36500 NM_032930 85016 Hs.98328 NM_032930 ENSG00000137691 CFAP300 C11orf70|CILD38 cilia and flagella associated protein 300 protein-coding 283-15 chr6 46886600 46886816 + 1.83333 NA intron (NM_001098518, intron 4 of 20) intron (NM_001098518, intron 4 of 20) -16763 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 392.667-2 chr11 133576186 133576609 + 1.83333 NA Intergenic Intergenic -43896 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 229.5-25 chr3 98038536 98038721 + 1.83333 NA Intergenic Intergenic -3324 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 642.167-3 chr17 32141598 32142400 + 1.83333 NA promoter-TSS (NR_110083) promoter-TSS (NR_110083) -455 NM_001033568 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding 196.833-28 chr9 69530094 69530234 + 1.83333 NA intron (NM_001163, intron 1 of 12) L1PB4|LINE|L1 142207 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 400.167-5 chr6 111258916 111259338 + 1.83333 NA promoter-TSS (NM_153369) promoter-TSS (NM_153369) -212 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 440.833-6 chr8 125703180 125703654 + 1.83333 NA Intergenic Intergenic 247780 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 473.167-4 chr4 107915408 107915959 + 1.83333 NA TTS (NM_001136258) TTS (NM_001136258) -15866 NM_183075 113612 Hs.109087 NM_183075 ENSG00000155016 CYP2U1 P450TEC|SPG49|SPG56 cytochrome P450 family 2 subfamily U member 1 protein-coding 283-6 chr17 8119163 8119416 + 1.83333 NA promoter-TSS (NM_021628) promoter-TSS (NM_021628) -373 NM_001165960 59344 Hs.232770 NM_021628 ENSG00000179148 ALOXE3 ARCI3|E-LOX|eLOX-3|eLOX3 arachidonate lipoxygenase 3 protein-coding 282.834-6 chr2 198449615 198449801 + 1.83333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -74611 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 366.166 chr11 41755283 41755504 + 1.83333 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 40825 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 417-3 chr2 209396247 209396644 + 1.83333 NA Intergenic MIR|SINE|MIR -27602 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 413.833-3 chr22 29388608 29388921 + 1.83333 NA promoter-TSS (NM_145730) promoter-TSS (NM_145730) -181 NM_001127 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 363.666-7 chr9 95950091 95950448 + 1.83333 NA intron (NM_020207, intron 12 of 18) L1M4|LINE|L1 71542 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 334.5-6 chr12 1689788 1690101 + 1.83333 NA Intergenic Intergenic -1126 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 318.333-10 chr7 81269102 81269612 + 1.83333 NA Intergenic Intergenic 292462 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 240.833 chr1 95045925 95046138 + 1.83333 NA intron (NM_001305242, intron 2 of 4) intron (NM_001305242, intron 2 of 4) -15565 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 318.499 chr5 72920886 72921110 + 1.83333 NA Intergenic Intergenic -35043 NM_001146032 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 464.334 chr10 4849382 4849930 + 1.83333 NA Intergenic L1MA6|LINE|L1 23449 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 217.833-16 chr4 135263048 135263242 + 1.83333 NA Intergenic MLT1G1|LTR|ERVL-MaLR -139586 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 319.833-10 chr3 88629246 88629569 + 1.83333 NA Intergenic Intergenic 290951 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 347.666-2 chr8 117237269 117237614 + 1.83333 NA Intergenic Intergenic 102446 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 247.666-2 chr1 222559035 222559375 + 1.83333 NA intron (NM_001201536, intron 10 of 11) intron (NM_001201536, intron 10 of 11) -11101 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 281.666-6 chr7 23696367 23696682 + 1.83333 NA intron (NM_001127365, intron 3 of 4) AluJb|SINE|Alu -13695 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 400.333-5 chr3 54870264 54870540 + 1.83333 NA intron (NM_018398, intron 17 of 37) intron (NM_018398, intron 17 of 37) 30853 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 209.333-21 chr2 112064418 112064593 + 1.83333 NA intron (NM_001329914, intron 3 of 18) intron (NM_001329914, intron 3 of 18) 9236 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 281.833-7 chr15 76045961 76046144 + 1.83333 NA Intergenic L1MA3|LINE|L1 -13933 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 436.999 chr16 10743819 10744100 + 1.83333 NA promoter-TSS (NM_001323595) promoter-TSS (NM_001323595) 90 NM_001323597 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 419.166-2 chr2 18728482 18728911 + 1.83333 NA Intergenic Intergenic -139116 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 366.833 chr10 28067213 28067605 + 1.83333 NA intron (NR_134518, intron 12 of 16) intron (NR_134518, intron 12 of 16) 5969 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 298.833-10 chr7 100469011 100469824 + 1.83333 NA intron (NR_130119, intron 3 of 4) intron (NR_130119, intron 3 of 4) -5157 NM_001004323 402573 Hs.632306 NM_001004323 ENSG00000185955 C7orf61 - chromosome 7 open reading frame 61 protein-coding 394.666-4 chr7 53418070 53418445 + 1.83333 NA Intergenic Intergenic 382624 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 313.501-2 chr2 23761174 23761510 + 1.83333 NA intron (NR_125717, intron 25 of 28) MamSINE1|SINE|tRNA-RTE 165781 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 213.5-9 chr16 4650491 4650708 + 1.83333 NA intron (NM_001142290, intron 2 of 16) intron (NM_001142290, intron 2 of 16) -20719 NR_106827 102466731 NR_106827 ENSG00000276641 MIR6769A hsa-mir-6769a microRNA 6769a ncRNA 269.667-6 chr12 57452863 57453316 + 1.83333 NA Intergenic Intergenic -2218 NM_031479 83729 Hs.632713 NM_031479 ENSG00000139269 INHBE - inhibin subunit beta E protein-coding 296.5-25 chr8 115954761 115954981 + 1.83333 NA intron (NR_046215, intron 12 of 13) intron (NR_046215, intron 12 of 13) -285896 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 460.167-5 chr8 131834450 131834891 + 1.83333 NA Intergenic Intergenic -69423 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 313.167-15 chr8 118415660 118415966 + 1.83333 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -205188 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 362-20 chr8 140172492 140172768 + 1.83333 NA intron (NM_001160372, intron 17 of 22) (GCA)n|Simple_repeat|Simple_repeat -72095 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 401.5-11 chr8 108492982 108493206 + 1.83333 NA Intergenic AluSx1|SINE|Alu 49470 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 376.166-5 chr8 129405404 129405715 + 1.83333 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 78583 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 437-8 chr3 149949219 149949522 + 1.83333 NA intron (NM_183383, intron 7 of 8) L1PA5|LINE|L1 21525 NM_053024 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 289.833-4 chr16 74812499 74812828 + 1.83333 NA Intergenic MER113|DNA|hAT-Charlie -37843 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 277.333-16 chr14 56422604 56422902 + 1.83333 NA Intergenic Intergenic -91578 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 212.834-7 chr4 48141035 48141246 + 1.83333 NA intron (NM_003215, intron 15 of 17) intron (NM_003215, intron 15 of 17) -6890 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 393.833 chr10 31491342 31491794 + 1.83333 NA intron (NM_001323678, intron 2 of 6) L1MD2|LINE|L1 -91813 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 622.833-3 chr5 92309184 92310022 + 1.83333 NA Intergenic Intergenic -926286 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 279.333-3 chr1 190819599 190819829 + 1.83333 NA Intergenic L1MA3|LINE|L1 194824 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 522-4 chr17 61426839 61427593 + 1.83333 NA Intergenic AluJo|SINE|Alu 15465 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 250.167 chr1 15027510 15027927 + 1.83333 NA intron (NM_001370231, intron 3 of 8) intron (NM_001370231, intron 3 of 8) 81799 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 411.166-4 chr20 36950575 36950903 + 1.83333 NA intron (NM_015474, intron 1 of 15) intron (NM_015474, intron 1 of 15) 969 NM_001363733 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 535.833 chr11 47373817 47374583 + 1.83333 NA intron (NM_001080547, intron 2 of 4) intron (NM_001080547, intron 2 of 4) 4347 NM_003120 6688 Hs.502511 NM_003120 ENSG00000066336 SPI1 OF|PU.1|SFPI1|SPI-1|SPI-A Spi-1 proto-oncogene protein-coding 679.666-3 chr8 90991095 90991797 + 1.83333 NA Intergenic MIRb|SINE|MIR -6208 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 359.499-3 chr6 168641696 168641922 + 1.83333 NA intron (NM_001166412, intron 9 of 12) intron (NM_001166412, intron 9 of 12) 200625 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 265.834-4 chr18 46172696 46172914 + 1.83333 NA Intergenic MIR|SINE|MIR -1217 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 254-10 chr12 13212334 13212557 + 1.83333 NA intron (NM_001423, intron 2 of 4) intron (NM_001423, intron 2 of 4) 15719 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 246-4 chr11 29527775 29528164 + 1.83333 NA Intergenic LTR4|LTR|ERV1 -66444 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 348.834-3 chr5 27472074 27472566 + 1.83333 NA promoter-TSS (NR_038848) promoter-TSS (NR_038848) 28 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 322.166-2 chr2 53823453 53823852 + 1.83333 NA intron (NM_001164165, intron 1 of 9) AluSz|SINE|Alu 25553 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 393.666-2 chr7 91169976 91170287 + 1.83333 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -94302 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 419.499 chr17 73292075 73292349 + 1.83333 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 19789 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 253.5-15 chr19 14006414 14006606 + 1.83333 NA promoter-TSS (NM_002918) promoter-TSS (NM_002918) -190 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 338-4 chr12 3671578 3671926 + 1.83333 NA intron (NM_001144958, intron 7 of 19) intron (NM_001144958, intron 7 of 19) 81357 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 283.666 chr14 46028574 46028928 + 1.83333 NA Intergenic Intergenic -35408 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 172.667-41 chr4 42796251 42796409 + 1.83333 NA Intergenic Intergenic -96936 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 584.666-2 chr18 7800239 7801143 + 1.83333 NA intron (NM_002845, intron 2 of 30) Tigger3b|DNA|TcMar-Tigger 233375 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 189.666-4 chr22 27968502 27968631 + 1.83333 NA intron (NR_026963, intron 2 of 4) intron (NR_026963, intron 2 of 4) -47954 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 402.666-2 chr11 28048262 28048556 + 1.83333 NA intron (NM_031217, intron 13 of 16) L1ME4a|LINE|L1 -8406 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 326.167-12 chr8 69508843 69509097 + 1.83333 NA intron (NR_156414, intron 2 of 20) intron (NR_156414, intron 2 of 20) 16123 NR_156414 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 335.667-10 chr2 114954814 114955252 + 1.83333 NA intron (NM_001321910, intron 2 of 26) MER41A|LTR|ERV1 -109540 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 315.167-9 chr5 31194490 31194706 + 1.83333 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 912 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 320-11 chr20 11894875 11895130 + 1.83333 NA intron (NM_001282550, intron 1 of 4) intron (NM_001282550, intron 1 of 4) 2509 NM_001282550 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 287-19 chr22 25747348 25747561 + 1.83333 NA intron (NM_001318245, intron 1 of 43) MER117|DNA|hAT-Charlie 5266 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 354.334 chr9 2800929 2801258 + 1.83333 NA Intergenic AluJb|SINE|Alu 43002 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 288.667-14 chr3 52606311 52606937 + 1.83333 NA intron (NM_001366074, intron 19 of 30) intron (NM_001366074, intron 19 of 30) 70019 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 344.166 chr2 35408584 35408804 + 1.83333 NA Intergenic Intergenic -62711 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 423.499 chr11 10086511 10086923 + 1.83333 NA intron (NM_030962, intron 2 of 39) MIRc|SINE|MIR 207490 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 341.333-5 chr12 43504563 43504766 + 1.83333 NA intron (NM_025003, intron 3 of 38) intron (NM_025003, intron 3 of 38) 47539 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 1080.17 chr4 114386282 114387295 + 1.83333 NA Intergenic Intergenic -211614 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 497.333-2 chr2 21175778 21176279 + 1.83333 NA Intergenic Intergenic 52042 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 241-19 chr3 139590320 139590645 + 1.83333 NA intron (NM_001320510, intron 3 of 6) HAL1|LINE|L1 -50740 NM_002899 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 374.499 chr1 184163187 184163423 + 1.83333 NA Intergenic AluJb|SINE|Alu 111575 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 199-43 chr6 41920674 41920888 + 1.83333 NA promoter-TSS (NM_004053) promoter-TSS (NM_004053) 162 NM_001305456 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|SRB2|TRFP mediator complex subunit 20 protein-coding 231.166-3 chr7 38695832 38696295 + 1.83333 NA Intergenic L1P1|LINE|L1 -8974 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 239.5-13 chr16 89641323 89641605 + 1.83333 NA Intergenic LTR13_|LTR|ERVK 16244 NM_002768 5119 Hs.589427 NM_002768 ENSG00000131165 CHMP1A CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A charged multivesicular body protein 1A protein-coding 421.5 chr14 57834180 57834736 + 1.83333 NA intron (NM_001352012, intron 1 of 8) MamRTE1|LINE|RTE-BovB 30541 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 761.332 chr9 88593712 88594254 + 1.83333 NA Intergenic Intergenic 58805 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 399.333-3 chr10 32004851 32005397 + 1.83333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 51301 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 322.5-19 chr3 97481723 97482170 + 1.83333 NA intron (NM_001080448, intron 9 of 17) intron (NM_001080448, intron 9 of 17) 42339 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 367.666-3 chr16 66989559 66989902 + 1.83333 NA intron (NM_001364782, intron 1 of 13) AluSq2|SINE|Alu 1141 NM_173815 283848 Hs.346947 NM_173815 ENSG00000172824 CES4A CES6|CES8 carboxylesterase 4A protein-coding 378.166-4 chr19 56626119 56626468 + 1.83333 NA intron (NR_163262, intron 3 of 5) AluJr|SINE|Alu -16866 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 259-38 chr7 14451835 14452113 + 1.83333 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 389476 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 523.333 chr12 20724833 20725622 + 1.83333 NA intron (NM_017435, intron 9 of 14) intron (NM_017435, intron 9 of 14) 29762 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 570.833 chr12 15419668 15420481 + 1.83333 NA intron (NM_030667, intron 1 of 26) AluYk2|SINE|Alu 97566 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 183.666-3 chr2 79614421 79614554 + 1.83333 NA intron (NM_001282598, intron 1 of 17) Arthur1|DNA|hAT-Tip100 34872 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 298.167-2 chr1 205325150 205325873 + 1.83333 NA Intergenic L2c|LINE|L2 -3766 NM_030952 81788 Hs.497512 NM_030952 ENSG00000163545 NUAK2 SNARK NUAK family kinase 2 protein-coding 308.333-17 chr4 37020854 37021053 + 1.83333 NA TTS (NR_134669) TTS (NR_134669) 19174 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 405.167-5 chr5 8864332 8864772 + 1.83333 NA intron (NR_109932, intron 1 of 2) intron (NR_109932, intron 1 of 2) 24820 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 462.833-4 chr21 42009111 42009532 + 1.83333 NA non-coding (NR_119384, exon 1 of 2) non-coding (NR_119384, exon 1 of 2) 127 NR_119384 150142 Hs.143833 NM_198078 ENSG00000237232 ZNF295-AS1 C21orf121|NCRNA00318|PRED87 ZNF295 antisense RNA 1 ncRNA 169.666 chr17 61730410 61730617 + 1.83333 NA intron (NM_032043, intron 16 of 19) intron (NM_032043, intron 16 of 19) 133046 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 583.167-4 chr9 127589633 127590464 + 1.83333 NA Intergenic Intergenic -11017 NM_001035534 64855 Hs.522401 NM_022833 ENSG00000136830 NIBAN2 C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6 niban apoptosis regulator 2 protein-coding 220.833-14 chr18 32651679 32651857 + 1.83333 NA Intergenic L1MA2|LINE|L1 121255 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 232.666-8 chr2 149993143 149993364 + 1.83333 NA Intergenic MER39|LTR|ERV1 -134062 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 396.167-6 chr14 43275785 43276145 + 1.83333 NA Intergenic Intergenic 1231318 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 315-9 chr21 45309192 45309452 + 1.83333 NA Intergenic MLT1C|LTR|ERVL-MaLR 21270 NR_026943 642852 Hs.11637 NR_026943 ENSG00000223768 LINC00205 NCRNA00205 long intergenic non-protein coding RNA 205 ncRNA 366-13 chr6 62090174 62090523 + 1.83333 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 195877 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 704.166 chr11 30914123 30914852 + 1.83333 NA intron (NM_001367979, intron 27 of 38) Charlie4z|DNA|hAT-Charlie 78199 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 303-12 chr2 100134240 100134416 + 1.83333 NA intron (NM_002285, intron 1 of 23) intron (NM_002285, intron 1 of 23) 8262 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 171.667-55 chr7 32148200 32148331 + 1.83333 NA intron (NM_001322059, intron 3 of 17) Charlie5|DNA|hAT-Charlie -76829 NM_001322055 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 364.667-10 chr19 32599445 32599885 + 1.83333 NA intron (NM_032139, intron 28 of 28) intron (NM_032139, intron 28 of 28) 8804 NR_145718 109616972 NR_145718 ENSG00000201388 SNORA68B - small nucleolar RNA, H/ACA box 68B snoRNA 444.999-2 chr5 56264189 56264637 + 1.83333 NA Intergenic Intergenic -31083 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 266.334-2 chr22 41844223 41844495 + 1.83333 NA intron (NR_103834, intron 1 of 21) intron (NR_103834, intron 1 of 21) -9694 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 249.833-15 chr4 63640173 63640309 + 1.83333 NA Intergenic Intergenic 769209 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 476.667-3 chr7 85851340 85851869 + 1.83333 NA Intergenic Intergenic 430482 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 478.833-2 chr13 36083535 36083872 + 1.83333 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 47679 NM_004734 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 359.333-6 chr15 70888219 70888542 + 1.83333 NA intron (NM_020147, intron 1 of 2) L1ME3A|LINE|L1 4053 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 525.166-2 chr19 12189537 12189917 + 1.83333 NA 3' UTR (NM_003437, exon 4 of 4) 3' UTR (NM_003437, exon 4 of 4) -5288 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 189-55 chr8 131406079 131406281 + 1.83333 NA Intergenic Intergenic -365271 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 411.333-5 chr12 121230245 121231071 + 1.83333 NA intron (NR_046373, intron 7 of 10) intron (NR_046373, intron 7 of 10) 20529 NM_001261397 5025 Hs.321709 NM_002560 ENSG00000135124 P2RX4 P2X4|P2X4R purinergic receptor P2X 4 protein-coding 418.166 chr22 27147773 27148186 + 1.83333 NA Intergenic MIRc|SINE|MIR -39537 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 221-19 chr2 155747775 155747922 + 1.83333 NA Intergenic L1PA10|LINE|L1 507083 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 460.167-3 chr6 43427497 43427919 + 1.83333 NA promoter-TSS (NR_146762) promoter-TSS (NR_146762) -155 NR_146762 89845 Hs.55879 NM_033450 ENSG00000124574 ABCC10 EST182763|MRP7|SIMRP7 ATP binding cassette subfamily C member 10 protein-coding 756.166 chr10 37754500 37755194 + 1.83333 NA Intergenic Intergenic 40328 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 242.666-15 chr5 68289892 68290105 + 1.83333 NA promoter-TSS (NM_181504) promoter-TSS (NM_181504) -666 NM_181504 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 219.833-17 chr2 187479765 187479994 + 1.83333 NA intron (NM_001318941, intron 7 of 7) intron (NM_001318941, intron 7 of 7) -31627 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 238.833-7 chr14 58078185 58078501 + 1.83333 NA intron (NM_001001872, intron 5 of 7) L3|LINE|CR1 73870 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 313.833-5 chr18 12830594 12830894 + 1.83333 NA intron (NM_080423, intron 4 of 8) intron (NM_080423, intron 4 of 8) 10218 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 205.333-27 chr22 30802895 30803083 + 1.83333 NA intron (NM_001282740, intron 1 of 12) CpG -19527 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 402-7 chr22 27239041 27239650 + 1.83333 NA Intergenic Intergenic -14666 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 167.667 chr1 153671719 153671893 + 1.83333 NA promoter-TSS (NM_001267809) promoter-TSS (NM_001267809) -778 NM_001267809 3608 Hs.75117 NM_004515 ENSG00000143621 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding 372.666 chr1 66066399 66066704 + 1.83333 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -15833 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 630.166 chr22 32103595 32104314 + 1.83333 NA intron (NM_000343, intron 13 of 14) LTR87|LTR|ERVL? -18023 NR_040114 23782 Hs.581098 NR_040114 ENSG00000234479 AP1B1P1 ADTB1L1|dJ127L4.2 AP1B1 pseudogene 1 pseudo 325.833-4 chr22 44890228 44890641 + 1.83333 NA intron (NM_001242450, intron 8 of 12) intron (NM_001242450, intron 8 of 12) 113185 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 414.166 chr14 35581223 35581569 + 1.83333 NA intron (NM_014990, intron 36 of 40) intron (NM_014990, intron 36 of 40) 47232 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 287.167-19 chr8 107068739 107069040 + 1.83333 NA Intergenic Intergenic 267626 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 360.499 chr17 28046089 28046315 + 1.83333 NA intron (NM_016231, intron 1 of 10) intron (NM_016231, intron 1 of 10) 3525 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 279.333-22 chr8 136448605 136448854 + 1.83333 NA Intergenic L2a|LINE|L2 -82069 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 282.167-12 chr5 39891273 39891519 + 1.83333 NA Intergenic Intergenic -160895 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 371.333-8 chr8 136859767 136860198 + 1.83333 NA intron (NR_147196, intron 4 of 5) L1MC|LINE|L1 329184 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 436.333 chr10 16224635 16224896 + 1.83333 NA Intergenic L1ME3C|LINE|L1 -212178 NM_001001484 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 498 chr1 6489432 6490571 + 1.83333 NA intron (NM_001042663, intron 2 of 21) intron (NM_001042663, intron 2 of 21) 579 NM_001042664 57449 Hs.284232 NM_020631 ENSG00000171680 PLEKHG5 CMTRIC|DSMA4|GEF720|Syx|Tech pleckstrin homology and RhoGEF domain containing G5 protein-coding 263.5-22 chr5 6900120 6900422 + 1.83333 NA Intergenic Intergenic -72350 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 286.667-11 chr17 59859681 59859897 + 1.83333 NA 3' UTR (NM_001193609, exon 8 of 8) 3' UTR (NM_001193609, exon 8 of 8) 18523 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 527.333-3 chr2 63972495 63972864 + 1.83333 NA intron (NM_001005739, intron 3 of 22) AluSx|SINE|Alu 46749 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 222.167-15 chr14 64420940 64421183 + 1.83333 NA intron (NM_005956, intron 8 of 27) (TTCACC)n|Simple_repeat|Simple_repeat 32708 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 253.5 chr1 39272175 39272497 + 1.83333 NA intron (NM_012090, intron 5 of 92) intron (NM_012090, intron 5 of 92) -136737 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 555.833-3 chr7 14333323 14333839 + 1.83333 NA intron (NM_001350717, intron 22 of 24) Charlie15b|DNA|hAT-Charlie -342156 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 282-27 chr8 90965685 90965941 + 1.83333 NA intron (NM_001363275, intron 4 of 5) L1MB5|LINE|L1 19264 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 434.833-4 chr7 85135687 85135957 + 1.83333 NA Intergenic Intergenic -13891 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 237.667-16 chr18 62714797 62715176 + 1.83333 NA promoter-TSS (NM_194449) promoter-TSS (NM_194449) -555 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 346-3 chr14 39492386 39492691 + 1.83333 NA Intergenic MSTD|LTR|ERVL-MaLR -60038 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 379.833-4 chr8 134341100 134341401 + 1.83333 NA Intergenic Intergenic -256821 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 339.666 chr1 195520638 195520905 + 1.83333 NA Intergenic L1PA17|LINE|L1 567944 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 191.666 chr1 68071798 68072047 + 1.83333 NA intron (NR_040077, intron 3 of 9) L1MC3|LINE|L1 -20291 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 291-24 chr7 68254211 68254608 + 1.83333 NA Intergenic Intergenic 234156 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 306-16 chr7 12888903 12889334 + 1.83333 NA Intergenic Intergenic 201485 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 229.666-7 chr4 189101691 189101905 + 1.83333 NA Intergenic Intergenic 325141 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 200.166-3 chr7 22597658 22597828 + 1.83333 NA Intergenic L1ME4a|LINE|L1 34406 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 308.166-10 chr5 65200098 65200347 + 1.83333 NA intron (NR_135689, intron 21 of 25) intron (NR_135689, intron 21 of 25) 281698 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 356.833-4 chr2 155712471 155712774 + 1.83333 NA Intergenic Intergenic 542309 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 470.166 chr2 88286233 88286576 + 1.83333 NA Intergenic Intergenic 113265 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 239.5-24 chr2 211033748 211033940 + 1.83333 NA Intergenic Intergenic 416273 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 592.167-4 chr20 19993062 19993516 + 1.83333 NA intron (NM_001242581, intron 10 of 11) intron (NM_001242581, intron 10 of 11) -24001 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 359.333-11 chr3 185038946 185039292 + 1.83333 NA intron (NM_001009921, intron 45 of 46) L1PA15|LINE|L1 113941 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 437.334-4 chr2 27620080 27620586 + 1.83333 NA intron (NM_001271289, intron 12 of 12) MER33|DNA|hAT-Charlie -8315 NM_001145049 11321 Hs.18259 NM_007266 ENSG00000198522 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 432.167 chr10 115799199 115799874 + 1.83333 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 395253 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 587.665 chr6 133552164 133552600 + 1.83333 NA intron (NR_109982, intron 5 of 8) intron (NR_109982, intron 5 of 8) -268765 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 227.333-27 chr5 8329645 8329848 + 1.83333 NA Intergenic Intergenic 127818 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 187.833-9 chr12 10764924 10765332 + 1.83333 NA intron (NR_120463, intron 1 of 6) intron (NR_120463, intron 1 of 6) 14894 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 199.334-5 chr3 74323787 74324031 + 1.83333 NA intron (NM_020872, intron 12 of 21) intron (NM_020872, intron 12 of 21) 197231 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 365.333-9 chr3 174742155 174742618 + 1.83333 NA Intergenic Intergenic -116948 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 402.167-2 chr1 179809680 179810271 + 1.83333 NA TTS (NR_138089) TTS (NR_138089) 6051 NR_162130 113219451 NR_162130 MIR12116 - microRNA 12116 ncRNA 352.666-7 chr21 30719678 30719938 + 1.83333 NA Intergenic Intergenic -1031 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 504.5-3 chr2 240438050 240438673 + 1.83333 NA intron (NM_002081, intron 1 of 8) intron (NM_002081, intron 1 of 8) 2698 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 347.167-8 chr20 39268709 39269170 + 1.83333 NA Intergenic Intergenic -44191 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 273-18 chr3 66215645 66215874 + 1.83333 NA intron (NM_173471, intron 1 of 10) intron (NM_173471, intron 1 of 10) -4983 NR_028475 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 259.167-11 chr5 39626814 39627071 + 1.83333 NA Intergenic AluY|SINE|Alu 106511 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 215.667-13 chr12 65100113 65100403 + 1.83333 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 21047 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 207.834-4 chr20 36692770 36693023 + 1.83333 NA intron (NM_022477, intron 2 of 14) AluJo|SINE|Alu -46700 NM_032214 84174 Hs.713578 NM_032214 ENSG00000101082 SLA2 C20orf156|MARS|SLAP-2|SLAP2 Src like adaptor 2 protein-coding 395.167-8 chr9 114677586 114677974 + 1.83333 NA intron (NR_144867, intron 1 of 4) intron (NR_144867, intron 1 of 4) 4309 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 313.333-18 chr7 95816674 95816924 + 1.83333 NA intron (NM_001135557, intron 4 of 15) L1M5|LINE|L1 44293 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 383.333-3 chr1 181189146 181189433 + 1.83333 NA Intergenic Intergenic 14805 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 339.834-2 chr14 66210465 66210964 + 1.83333 NA Intergenic Intergenic -275657 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 318.334-3 chr1 240023278 240023531 + 1.83333 NA Intergenic Intergenic 15880 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 400.667-3 chr14 20848658 20849306 + 1.83333 NA Intergenic Intergenic -42421 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 366.833-7 chr7 92632968 92633242 + 1.83333 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -42715 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 367.5-3 chr3 167032454 167032927 + 1.83333 NA Intergenic Intergenic 134007 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 361.5-15 chrX 51215402 51215838 + 1.83333 NA Intergenic L2a|LINE|L2 -44199 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 301.166-10 chr9 36932132 36932335 + 1.83333 NA intron (NR_104000, intron 6 of 9) AluJr4|SINE|Alu -38702 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 376.166-4 chr7 6549814 6550190 + 1.83333 NA intron (NM_001145118, intron 1 of 21) AluJo|SINE|Alu 1434 NM_001145118 392862 Hs.512174 NM_001145118 ENSG00000215045 GRID2IP DELPHILIN Grid2 interacting protein protein-coding 366.833-4 chr2 61310673 61311022 + 1.83333 NA intron (NM_014709, intron 27 of 79) intron (NM_014709, intron 27 of 79) 106530 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 339.5-10 chr21 23705064 23705349 + 1.83333 NA Intergenic Intergenic -320371 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 420.166 chr10 117372984 117373324 + 1.83333 NA intron (NM_173791, intron 1 of 4) intron (NM_173791, intron 1 of 4) 2286 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 210-32 chr4 84567689 84568088 + 1.83333 NA Intergenic Intergenic -15239 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 203.833-3 chr10 6445814 6446088 + 1.83333 NA intron (NM_001282644, intron 15 of 17) intron (NM_001282644, intron 15 of 17) 95635 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 404.666-5 chr2 59464682 59465109 + 1.83333 NA Intergenic MIR3|SINE|MIR 247187 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 319.666-5 chr9 128927731 128927913 + 1.83333 NA intron (NM_001100877, intron 2 of 9) intron (NM_001100877, intron 2 of 9) 5539 NM_001100877 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 467.832 chr16 64349646 64350238 + 1.83333 NA Intergenic Intergenic 772121 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 319.499 chr1 220296189 220296401 + 1.83333 NA Intergenic Intergenic -23842 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 432.333-2 chr14 50126076 50126516 + 1.83333 NA intron (NM_006939, intron 21 of 22) L1MA7|LINE|L1 -9724 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 262.5-23 chr5 4685365 4685571 + 1.83333 NA Intergenic L1P1|LINE|L1 -88013 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 322.833-8 chr5 43861496 43861688 + 1.83333 NA Intergenic Intergenic -258362 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 416.834-2 chr19 43809729 43810223 + 1.83333 NA intron (NM_182573, intron 1 of 4) Zaphod2|DNA|hAT-Tip100 -7529 NM_001031749 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 220.833-8 chr14 23478286 23478526 + 1.83333 NA TTS (NM_001042635) TTS (NM_001042635) 8703 NM_001042635 25983 Hs.9043 NM_015514 ENSG00000129460 NGDN C14orf120|CANu1|LCP5|NGD|lpd-2 neuroguidin protein-coding 366.334-4 chr17 57832392 57832879 + 1.83333 NA Intergenic Intergenic 17409 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 462.001-4 chr2 47306651 47307014 + 1.83333 NA intron (NR_110207, intron 1 of 2) AluJb|SINE|Alu -28483 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 423.667-8 chr9 94897075 94897605 + 1.83333 NA intron (NM_032823, intron 5 of 14) L1MC|LINE|L1 48214 NR_147614 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 380.333-5 chr15 85840767 85841049 + 1.83333 NA Intergenic Intergenic 15273 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 355.333 chr13 87275337 87275574 + 1.83333 NA Intergenic Intergenic 343285 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 280.333-9 chr14 50958409 50958693 + 1.83333 NA Intergenic Intergenic -14068 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 421.666-2 chr18 46481257 46481613 + 1.83333 NA intron (NM_001145472, intron 22 of 23) intron (NM_001145472, intron 22 of 23) 37651 NM_001173129 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 202-32 chr6 89100575 89100802 + 1.83333 NA intron (NM_080743, intron 4 of 4) L1MEg|LINE|L1 17383 NM_080743 135295 Hs.254414 NM_080743 ENSG00000154548 SRSF12 SFRS13B|SFRS19|SRrp35 serine and arginine rich splicing factor 12 protein-coding 388.5-4 chr18 76197914 76198484 + 1.83333 NA Intergenic L1MD2|LINE|L1 -11311 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 693.666-3 chr5 61055108 61055648 + 1.83333 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) -106938 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 174.666-3 chr3 151174016 151174171 + 1.83333 NA intron (NM_053002, intron 10 of 42) Tigger4a|DNA|TcMar-Tigger 29123 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 335.499-3 chr9 77751690 77751929 + 1.83333 NA intron (NM_002072, intron 5 of 6) (CAAA)n|Simple_repeat|Simple_repeat -103487 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 513.167-2 chr1 244800975 244801457 + 1.83333 NA Intergenic L1ME3B|LINE|L1 -34090 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 799.167 chr3 30112356 30113483 + 1.83333 NA Intergenic MIRb|SINE|MIR -178763 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 211.167-7 chr11 25139023 25139189 + 1.83333 NA Intergenic Intergenic 642053 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 272.833-14 chr3 182819467 182819688 + 1.83333 NA intron (NM_014616, intron 1 of 29) intron (NM_014616, intron 1 of 29) 26073 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 405.833-8 chr9 73979728 73980024 + 1.83333 NA Intergenic L1MB8|LINE|L1 -391655 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 246.5-14 chr16 584376 584645 + 1.83333 NA TTS (NM_004204) TTS (NM_004204) -4847 NM_001172663 57799 Hs.459630 NM_021168 ENSG00000197562 RAB40C RARL|RASL8C RAB40C, member RAS oncogene family protein-coding 200.333-44 chr9 90248395 90248581 + 1.83333 NA Intergenic Intergenic 185001 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 470.333-4 chr5 12863030 12863411 + 1.83333 NA Intergenic L2|LINE|L2 169666 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 544.999-3 chr5 4927995 4928354 + 1.83333 NA Intergenic MER20|DNA|hAT-Charlie -106185 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 317.333-3 chr12 630083 630408 + 1.83333 NA promoter-TSS (NR_122124) promoter-TSS (NR_122124) -646 NR_122124 100049716 Hs.655804 NR_122124 ENSG00000177406 LOC100049716 - uncharacterized LOC100049716 ncRNA 358.334 chr11 98861806 98862080 + 1.83333 NA Intergenic Intergenic -159006 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 337.999-4 chr5 67549099 67549297 + 1.83333 NA Intergenic Intergenic 97591 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 197.167-9 chr14 20645540 20645727 + 1.83333 NA Intergenic Intergenic -3942 NM_001001968 341799 Hs.513132 NM_001001968 ENSG00000181803 OR6S1 OR14-37|OR6S1Q olfactory receptor family 6 subfamily S member 1 protein-coding 213.167-20 chr4 68278881 68279116 + 1.83333 NA Intergenic L1M5|LINE|L1 -33304 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 485.5 chr15 63945028 63945478 + 1.83333 NA intron (NM_014326, intron 4 of 11) intron (NM_014326, intron 4 of 11) 16979 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 442.001 chr1 178127544 178127951 + 1.83333 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 33643 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 407.167-5 chr22 32723635 32724378 + 1.83333 NA intron (NM_003490, intron 6 of 13) MIR3|SINE|MIR -76810 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 246.5-9 chr14 74620924 74621088 + 1.83333 NA Intergenic MLT1M|LTR|ERVL-MaLR -8769 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 293-19 chr5 90743099 90743291 + 1.83333 NA intron (NR_003149, intron 50 of 89) intron (NR_003149, intron 50 of 89) 184398 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 357.334-7 chr8 143431518 143431797 + 1.83333 NA promoter-TSS (NM_201589) promoter-TSS (NM_201589) -925 NM_201589 389692 NM_201589 ENSG00000182759 MAFA INSDM|RIPE3b1|hMafA MAF bZIP transcription factor A protein-coding 391.5-5 chr2 74904437 74904999 + 1.83333 NA Intergenic L1ME5|LINE|L1 -4413 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 278-23 chr5 111279578 111279847 + 1.83333 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 55328 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 207.666-2 chr15 83438099 83438279 + 1.83333 NA Intergenic MER3|DNA|hAT-Charlie -9039 NM_001324182 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 404.5-9 chr8 61061007 61061369 + 1.83333 NA Intergenic Intergenic -93440 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 296.167-15 chr4 101882232 101882543 + 1.83333 NA intron (NM_017935, intron 5 of 16) intron (NM_017935, intron 5 of 16) 68545 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 235.333-6 chr17 28282850 28283036 + 1.83333 NA intron (NR_028334, intron 2 of 2) AluSz6|SINE|Alu 24439 NR_028334 284085 Hs.371796 NM_173624 ENSG00000265480 KRT18P55 - keratin 18 pseudogene 55 pseudo 591.499 chr1 151156153 151156844 + 1.83333 NA promoter-TSS (NR_144937) promoter-TSS (NR_144937) -151 NM_001204848 100534012 Hs.732060 NM_001204848 ENSG00000163156 TNFAIP8L2-SCNM1 SCNM1 TNFAIP8L2-SCNM1 readthrough protein-coding 368.5-6 chr16 77043303 77043522 + 1.83333 NA Intergenic L1MC5a|LINE|L1 -147778 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 381.166-6 chr7 82017119 82017566 + 1.83333 NA intron (NM_000722, intron 12 of 38) intron (NM_000722, intron 12 of 38) 8165 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 438.166-3 chr3 167735148 167735436 + 1.83333 NA promoter-TSS (NM_145860) promoter-TSS (NM_145860) -352 NM_001122752 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 219-31 chr7 34647597 34648058 + 1.83333 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -10391 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 423.333-4 chr10 101095419 101095978 + 1.83333 NA intron (NR_130723, intron 2 of 2) intron (NR_130723, intron 2 of 2) 29399 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 363.999-2 chr2 53842677 53842948 + 1.83333 NA intron (NM_001164165, intron 1 of 9) L1MEd|LINE|L1 6393 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 401.5-6 chr5 8993216 8993470 + 1.83333 NA Intergenic L1ME1|LINE|L1 60552 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 239.501-2 chr18 62811928 62812169 + 1.83333 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 96507 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 747.5 chr7 27143571 27144464 + 1.83333 NA promoter-TSS (NM_019102) promoter-TSS (NM_019102) -336 NM_019102 3202 Hs.655218 NM_019102 ENSG00000106004 HOXA5 HOX1|HOX1.3|HOX1C homeobox A5 protein-coding 375.667-8 chr17 56783345 56783761 + 1.83333 NA Intergenic L1MB5|LINE|L1 50367 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 168.333-42 chr22 41091585 41091716 + 1.83333 NA promoter-TSS (NM_001362843) promoter-TSS (NM_001362843) -863 NR_031694 100302237 NR_031694 ENSG00000284015 MIR1281 MIRN1281|hsa-mir-1281 microRNA 1281 ncRNA 505 chr12 76158679 76159184 + 1.83333 NA Intergenic Intergenic -74246 NM_004537 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 367.166 chr1 113960641 113961083 + 1.83333 NA intron (NM_198268, intron 8 of 15) intron (NM_198268, intron 8 of 15) 6985 NM_181358 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 363.5-7 chr7 96165063 96165413 + 1.83333 NA intron (NM_001160210, intron 13 of 17) L2a|LINE|L2 54518 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 531.501 chr19 13997529 13998088 + 1.83333 NA intron (NM_002918, intron 1 of 20) intron (NM_002918, intron 1 of 20) 8512 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 404.5-6 chr12 6279713 6280304 + 1.83333 NA Intergenic MIRb|SINE|MIR -30428 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 559.499 chr9 102850359 102850810 + 1.83333 NA Intergenic Intergenic -144749 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 440.5-8 chr9 4225587 4225927 + 1.83333 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -73574 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 222.5-15 chr15 49200109 49200349 + 1.83333 NA intron (NM_001289030, intron 2 of 10) MIR3|SINE|MIR 29982 NM_002044 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 358.666-3 chr17 42826120 42826433 + 1.83333 NA Intergenic L1ME4c|LINE|L1 -1960 NM_001314000 8678 Hs.716464 NM_003766 ENSG00000126581 BECN1 ATG6|VPS30|beclin1 beclin 1 protein-coding 491.999 chr11 124746750 124747051 + 1.83333 NA TTS (NM_014312) TTS (NM_014312) 5355 NM_001329920 23584 Hs.112377 NM_014312 ENSG00000019102 VSIG2 2210413P10Rik|CTH|CTXL V-set and immunoglobulin domain containing 2 protein-coding 293.833-6 chr17 44071012 44071240 + 1.83333 NA exon (NM_001319945, exon 1 of 5) exon (NM_001319945, exon 1 of 5) 215 NR_028581 92579 Hs.294005 NM_138387 ENSG00000141349 G6PC3 SCN4|UGRP glucose-6-phosphatase catalytic subunit 3 protein-coding 524.833-4 chr22 21001792 21002222 + 1.83333 NA promoter-TSS (NR_027052) promoter-TSS (NR_027052) 85 NR_027052 439931 Hs.517430 NR_027051 ENSG00000230513 THAP7-AS1 - THAP7 antisense RNA 1 ncRNA 351.333 chr1 94855251 94855609 + 1.83333 NA intron (NM_001258340, intron 9 of 14) intron (NM_001258340, intron 9 of 14) 30937 NM_001350223 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 470.333-2 chr14 63433586 63434001 + 1.83333 NA intron (NR_104104, intron 2 of 12) HAL1|LINE|L1 74445 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 326.5-4 chr14 42464797 42465040 + 1.83333 NA Intergenic Intergenic 858062 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 288.333-4 chr12 110102163 110102519 + 1.83333 NA Intergenic MLT1L|LTR|ERVL-MaLR -22016 NM_014055 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19 intraflagellar transport 81 protein-coding 190.667-56 chr8 101155131 101155391 + 1.83333 NA Intergenic Intergenic 50412 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 393.166-6 chr5 157948698 157949217 + 1.83333 NA Intergenic Intergenic -89812 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 242.833-15 chr5 81299740 81299913 + 1.83333 NA intron (NR_034122, intron 1 of 3) intron (NR_034122, intron 1 of 3) 1743 NR_034123 100131067 Hs.655855 NR_034121 ENSG00000247572 CKMT2-AS1 - CKMT2 antisense RNA 1 ncRNA 278.333-22 chr6 68778174 68778413 + 1.83333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 143011 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 451.333-5 chr3 113093454 113093869 + 1.83333 NA Intergenic L2a|LINE|L2 -73990 NM_001319111 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 173.833-11 chr11 73931373 73931509 + 1.83333 NA TTS (NM_025155) TTS (NM_025155) -18878 NM_153614 374407 Hs.567888 NM_153614 ENSG00000187726 DNAJB13 CILD34|RSPH16A|TSARG5|TSARG6 DnaJ heat shock protein family (Hsp40) member B13 protein-coding 194.333-2 chr1 38502891 38503094 + 1.83333 NA Intergenic Intergenic 27796 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 339.999 chr22 30672289 30672536 + 1.83333 NA Intergenic Intergenic -4537 NM_152511 150290 Hs.517544 NM_152511 ENSG00000167065 DUSP18 DSP18|DUSP20|LMWDSP20 dual specificity phosphatase 18 protein-coding 385.167-9 chr2 67207252 67207554 + 1.83333 NA intron (NR_038844, intron 1 of 7) intron (NR_038844, intron 1 of 7) -6005 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 192.833-21 chr2 189362799 189362949 + 1.83333 NA Intergenic Intergenic -78559 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 358.167-13 chr8 116702873 116703340 + 1.83333 NA intron (NM_003756, intron 2 of 7) LTR13_|LTR|ERVK 51006 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 203-7 chr11 76613665 76613798 + 1.83333 NA Intergenic Charlie7|DNA|hAT-Charlie 56207 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 385.5-6 chr8 126375434 126375738 + 1.83333 NA Intergenic MER68|LTR|ERVL 50091 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 262.833 chr1 94175283 94175566 + 1.83333 NA intron (NM_001328665, intron 21 of 21) intron (NM_001328665, intron 21 of 21) -54276 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 180.333-50 chr7 39839248 39839430 + 1.83333 NA Intergenic L2|LINE|L2 105771 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 286.666-12 chr7 121995971 121996159 + 1.83333 NA intron (NM_001206839, intron 8 of 28) intron (NM_001206839, intron 8 of 28) 122904 NM_001369395 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 361.167-6 chr4 168815892 168816295 + 1.83333 NA intron (NM_001166108, intron 10 of 21) intron (NM_001166108, intron 10 of 21) -16002 NM_001367568 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 323.333-11 chr17 62303983 62304302 + 1.83333 NA Intergenic Intergenic -28487 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 586.333 chr1 45569735 45570505 + 1.83333 NA TTS (NM_001202413) TTS (NM_001202413) -13868 NM_001195193 4678 Hs.319334 NM_002482 ENSG00000132780 NASP FLB7527|HMDRA1|PRO1999 nuclear autoantigenic sperm protein protein-coding 342.833-4 chr14 60413820 60414101 + 1.83333 NA Intergenic L1PA10|LINE|L1 72103 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 432.833-2 chr2 114150380 114150833 + 1.83333 NA Intergenic Intergenic -170622 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 169.5-37 chr5 144286126 144286412 + 1.83333 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 80878 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 291.5-33 chr9 37178742 37178944 + 1.83333 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 58245 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 502.333-4 chr8 123318324 123318682 + 1.83333 NA Intergenic L1M4|LINE|L1 -29531 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 234.5-14 chr14 61867393 61867633 + 1.83333 NA intron (NM_001367656, intron 1 of 7) L1ME1|LINE|L1 54810 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 290.166-3 chr2 79057815 79058076 + 1.83333 NA Intergenic L1MC4a|LINE|L1 30048 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 625.833-2 chr4 16205746 16206168 + 1.83333 NA intron (NM_153365, intron 2 of 13) intron (NM_153365, intron 2 of 13) 20514 NM_153365 202018 Hs.479223 NM_153365 ENSG00000169762 TAPT1 CMVFR|OCLSBG transmembrane anterior posterior transformation 1 protein-coding 504.001 chr17 75632778 75633325 + 1.83333 NA promoter-TSS (NM_001162995) promoter-TSS (NM_001162995) -383 NM_001162995 643008 Hs.528605 NM_001162995 ENSG00000204323 SMIM5 C17orf109|PP12104 small integral membrane protein 5 protein-coding 309.333-9 chr17 44876297 44876554 + 1.83333 NA intron (NM_001142605, intron 8 of 26) L1MC4|LINE|L1 22943 NM_001258353 9343 Hs.151787 NM_004247 ENSG00000108883 EFTUD2 MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD elongation factor Tu GTP binding domain containing 2 protein-coding 573.5-3 chr8 94813171 94814155 + 1.83333 NA Intergenic Intergenic -9624 NM_017864 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 376.666-2 chr14 21040230 21040512 + 1.83333 NA intron (NM_001282211, intron 1 of 14) intron (NM_001282211, intron 1 of 14) -1991 NM_032572 84659 Hs.525206 NM_032572 ENSG00000165799 RNASE7 RAE1 ribonuclease A family member 7 protein-coding 294.666-8 chr8 55837987 55838355 + 1.83333 NA Intergenic AluSq2|SINE|Alu -41664 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 377-5 chr19 8347803 8348142 + 1.83333 NA Intergenic MER20|DNA|hAT-Charlie -4710 NM_198471 256949 Hs.745036 NM_198471 ENSG00000186994 KANK3 ANKRD47 KN motif and ankyrin repeat domains 3 protein-coding 729.166-2 chr6 79867913 79868593 + 1.83333 NA Intergenic Intergenic -56007 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 821.167 chr3 74267332 74268113 + 1.83333 NA intron (NM_020872, intron 19 of 21) intron (NM_020872, intron 19 of 21) 253418 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 261.5-4 chr1 78910789 78911003 + 1.83333 NA intron (NM_022159, intron 12 of 14) intron (NM_022159, intron 12 of 14) 95834 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 440-4 chr11 98858755 98859173 + 1.83333 NA Intergenic L1MC1|LINE|L1 -161985 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 171-26 chr17 68466724 68466855 + 1.83333 NA intron (NM_001278433, intron 1 of 10) L1MB5|LINE|L1 -9265 NM_001320772 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 298.999 chr13 106794438 106794671 + 1.83333 NA Intergenic Intergenic 140674 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 241.333-4 chr10 66747035 66747208 + 1.83333 NA intron (NM_001127384, intron 9 of 17) MIR1_Amn|SINE|MIR -178915 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 528.332 chr15 56420703 56421189 + 1.83333 NA intron (NM_198524, intron 10 of 12) L1MEc|LINE|L1 44191 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 406.166 chr2 140695114 140695384 + 1.83333 NA intron (NM_018557, intron 41 of 90) L1ME3C|LINE|L1 -108564 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 293.334-5 chr14 65041092 65041337 + 1.83333 NA intron (NM_002028, intron 8 of 11) intron (NM_002028, intron 8 of 11) -3474 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 314-3 chr12 55370560 55370795 + 1.83333 NA Intergenic Intergenic 5566 NM_001005497 390323 Hs.554554 NM_001005497 ENSG00000187857 OR6C75 - olfactory receptor family 6 subfamily C member 75 protein-coding 664.666-2 chr3 48685427 48686225 + 1.83333 NA promoter-TSS (NM_184231) promoter-TSS (NM_184231) 89 NM_184231 51517 Hs.655006 NM_016453 ENSG00000213672 NCKIPSD AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH NCK interacting protein with SH3 domain protein-coding 205.666-2 chr16 86751231 86751459 + 1.83333 NA Intergenic Intergenic 29254 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 400.333-4 chr3 4943617 4944092 + 1.83333 NA intron (NR_125916, intron 1 of 2) L1MC|LINE|L1 -35583 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 360.499-2 chr2 102054803 102055260 + 1.83333 NA Intergenic MLT1F|LTR|ERVL-MaLR -15359 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 188.333-6 chr10 57453751 57454013 + 1.83333 NA Intergenic Intergenic -149323 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 360.666 chr12 40289635 40289890 + 1.83333 NA intron (NM_198578, intron 20 of 50) L1ME1|LINE|L1 64765 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 278.5 chr1 2362914 2363082 + 1.83333 NA intron (NM_001301060, intron 8 of 10) L1MEc|LINE|L1 -10337 NR_024489 100129534 Hs.655313 NM_001127577 ENSG00000269896 LOC100129534 - small nuclear ribonucleoprotein polypeptide N pseudogene pseudo 282.333-7 chr20 40191740 40192005 + 1.83333 NA Intergenic Intergenic 187411 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 355.667-11 chr5 114757499 114757829 + 1.83333 NA intron (NR_130785, intron 1 of 12) MLT1G3|LTR|ERVL-MaLR 15749 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 320.666-9 chr5 112305871 112306234 + 1.83333 NA intron (NM_001347887, intron 2 of 23) intron (NM_001347887, intron 2 of 23) 77769 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 181-40 chr9 137200860 137201052 + 1.83333 NA promoter-TSS (NM_001128228) promoter-TSS (NM_001128228) -215 NM_001128228 286262 Hs.323445 NM_173691 ENSG00000176058 TPRN C9orf75|DFNB79 taperin protein-coding 300.333-2 chr1 169996723 169997007 + 1.83333 NA intron (NM_014970, intron 10 of 19) intron (NM_014970, intron 10 of 19) 72050 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 249-13 chr16 69039421 69039700 + 1.83333 NA intron (NM_024562, intron 16 of 17) AluJb|SINE|Alu -66093 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 231-24 chr3 103372608 103372796 + 1.83333 NA Intergenic Intergenic 151414 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 402.167-7 chr22 40759617 40760018 + 1.83333 NA Intergenic Intergenic 54141 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 295.166-2 chr14 22069070 22069488 + 1.83333 NA Intergenic Intergenic 363474 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 174.167-23 chr2 207477269 207477447 + 1.83333 NA Intergenic Intergenic -52604 NR_163946 290-11 chr20 47279098 47279381 + 1.83333 NA intron (NM_001281774, intron 11 of 23) AluSx|SINE|Alu -39263 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 177.833-33 chr6 158695475 158695662 + 1.83333 NA intron (NM_001242394, intron 6 of 17) L1MB3|LINE|L1 32165 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 363.333-11 chrX 79082514 79082835 + 1.83333 NA Intergenic Intergenic -88298 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 182.666-7 chr3 53891890 53892070 + 1.83333 NA promoter-TSS (NM_021237) promoter-TSS (NM_021237) -121 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 371.166-3 chr4 64330130 64330374 + 1.83333 NA intron (NM_001363796, intron 2 of 11) intron (NM_001363796, intron 2 of 11) 79198 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 387-13 chr20 32737960 32738274 + 1.83333 NA intron (NM_053041, intron 1 of 8) MIRb|SINE|MIR 5891 NM_053041 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 228.333-35 chrX 124098081 124098275 + 1.83333 NA intron (NM_006603, intron 32 of 32) intron (NM_006603, intron 32 of 32) 136472 NM_001042750 10735 Hs.496710 NM_006603 ENSG00000101972 STAG2 NEDXCF|SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 398.5-10 chr5 117590619 117591168 + 1.83333 NA Intergenic Intergenic -139468 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 186.333-20 chr17 21207502 21207671 + 1.83333 NA intron (NM_003876, intron 1 of 1) intron (NM_003876, intron 1 of 1) 7009 NR_024547 8834 Hs.592945 NM_003876 ENSG00000178307 TMEM11 C17orf35|PM1|PMI transmembrane protein 11 protein-coding 186.333-19 chr16 11315616 11315800 + 1.83333 NA Intergenic Intergenic -9181 NR_031678 100313773 NR_031678 ENSG00000221801 MIR548H2 MIR548H-2|MIRN548H2 microRNA 548h-2 ncRNA 444.166-4 chr7 81751240 81751520 + 1.83333 NA 3' UTR (NM_001010934, exon 5 of 5) 3' UTR (NM_001010934, exon 5 of 5) 18667 NM_001010934 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 432.667-7 chr6 56757728 56758152 + 1.83333 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 85725 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 428.667-2 chr2 84919605 84920010 + 1.83333 NA Intergenic MER44B|DNA|TcMar-Tigger 14151 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 442.501-2 chr6 37242560 37243034 + 1.83333 NA intron (NM_145316, intron 1 of 3) intron (NM_145316, intron 1 of 3) 14802 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 300-23 chr9 2328564 2328855 + 1.83333 NA Intergenic L1ME3G|LINE|L1 170253 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 396.833-7 chr2 85366154 85366638 + 1.83333 NA intron (NR_138132, intron 6 of 12) intron (NR_138132, intron 6 of 12) 11627 NM_001329791 84173 Hs.269990 NM_032213 ENSG00000115459 ELMOD3 DFNB88|LST3|RBED1|RBM29 ELMO domain containing 3 protein-coding 630.834-4 chr4 183839832 183840820 + 1.83333 NA intron (NR_132761, intron 1 of 2) intron (NR_132761, intron 1 of 2) 42304 NR_132761 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 444.499 chr1 45550774 45551109 + 1.83333 NA 5' UTR (NM_006066, exon 1 of 10) 5' UTR (NM_006066, exon 1 of 10) 115 NM_153326 10327 Hs.474584 NM_006066 ENSG00000117448 AKR1A1 ALDR1|ALR|ARM|DD3|HEL-S-6 aldo-keto reductase family 1 member A1 protein-coding 239.833-2 chr11 91106816 91107095 + 1.83333 NA Intergenic Intergenic -237753 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 372.499-2 chr5 26007031 26007289 + 1.83333 NA Intergenic Intergenic 816207 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 409.333-2 chr15 99296194 99296541 + 1.83333 NA intron (NM_001321677, intron 5 of 8) MamGypLTR3|LTR|Gypsy 38842 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 199.667-35 chr5 6950826 6951273 + 1.83333 NA Intergenic Intergenic -123128 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 489.333-6 chr3 118872243 118872691 + 1.83333 NA Intergenic MSTA|LTR|ERVL-MaLR -61634 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 214.166-4 chr21 27476880 27477112 + 1.83333 NA Intergenic Intergenic -245383 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 400.666 chr11 123083746 123084089 + 1.83333 NA intron (NM_024769, intron 3 of 6) intron (NM_024769, intron 3 of 6) -21781 NM_006597 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 460.333-5 chr2 55771558 55772065 + 1.83333 NA Intergenic Intergenic -77967 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 466.5-5 chr19 46017052 46017538 + 1.83333 NA exon (NM_001267723, exon 12 of 14) exon (NM_001267723, exon 12 of 14) -1637 NR_030412 768217 NR_030412 ENSG00000211580 MIR769 MIRN769|hsa-mir-769|mir-769 microRNA 769 ncRNA 184-58 chrX 95164426 95164612 + 1.83333 NA Intergenic L1MC2|LINE|L1 -101293 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 385.333-8 chr4 100846996 100847542 + 1.83333 NA Intergenic Intergenic -172156 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 340.5-8 chr5 51514057 51514301 + 1.83333 NA Intergenic (ATA)n|Simple_repeat|Simple_repeat 130731 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 250.167-15 chr5 126778294 126778510 + 1.83333 NA intron (NR_134488, intron 1 of 11) CpG 1266 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 377.333-6 chr6 26537538 26537991 + 1.83333 NA promoter-TSS (NM_006353) promoter-TSS (NM_006353) -602 NM_006353 10473 Hs.236774 NM_006353 ENSG00000182952 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 376.834-5 chr6 121343334 121343725 + 1.83333 NA Intergenic LTR67B|LTR|ERVL -8800 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 680-2 chr10 70053837 70054436 + 1.83333 NA intron (NM_018649, intron 1 of 8) intron (NM_018649, intron 1 of 8) 1290 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 298.5-3 chr10 30270222 30270395 + 1.83333 NA Intergenic AluJo|SINE|Alu 58456 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 335.666-2 chr15 44030363 44030624 + 1.83333 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) -152322 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 338.667-4 chr14 73492920 73493254 + 1.83333 NA exon (NM_203309, exon 16 of 17) exon (NM_203309, exon 16 of 17) 2154 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 313.166-2 chr8 110676098 110676510 + 1.83333 NA Intergenic Intergenic 351129 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 224.333-11 chr16 84723562 84723811 + 1.83333 NA intron (NM_001272075, intron 2 of 14) L2b|LINE|L2 23686 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 277.5-25 chr8 121241307 121241575 + 1.83333 NA Intergenic A-rich|Low_complexity|Low_complexity -397905 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 536.334 chr14 20697525 20698184 + 1.83333 NA intron (NM_001282192, intron 2 of 2) intron (NM_001282192, intron 2 of 2) 9090 NM_194431 6038 Hs.283749 NM_002937 ENSG00000258818 RNASE4 RAB1|RNS4 ribonuclease A family member 4 protein-coding 271.5-4 chr1 203862887 203863115 + 1.83333 NA intron (NM_001328637, intron 2 of 4) intron (NM_001328637, intron 2 of 4) 1154 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 417.333-3 chr12 54005743 54006213 + 1.83333 NA Intergenic Intergenic -3007 NM_022658 3224 Hs.664500 NM_022658 ENSG00000037965 HOXC8 HOX3|HOX3A homeobox C8 protein-coding 591.499-3 chr9 84781617 84782382 + 1.83333 NA intron (NM_001369547, intron 13 of 13) intron (NM_001369547, intron 13 of 13) 76098 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 461.499 chr20 54254696 54255004 + 1.83333 NA Intergenic L1ME1|LINE|L1 46763 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 207.833 chr11 8959742 8960124 + 1.83333 NA intron (NM_001286094, intron 1 of 3) intron (NM_001286094, intron 1 of 3) 4509 NM_020644 56674 Hs.501853 NM_020644 ENSG00000175348 TMEM9B C11orf15 TMEM9 domain family member B protein-coding 398.333-2 chr10 11499678 11500012 + 1.83333 NA intron (NM_014688, intron 7 of 14) MLT1C|LTR|ERVL-MaLR 32435 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 438.999 chr8 128997336 128997647 + 1.83333 NA Intergenic Intergenic -31490 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 288.666-6 chr16 78443764 78443977 + 1.83333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 344216 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 257.166-4 chr5 173984424 173984700 + 1.83333 NA Intergenic L1M3f|LINE|L1 -4608 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 485.666 chr12 7241181 7241594 + 1.83333 NA Intergenic L1ME3|LINE|L1 51025 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 506.166 chr14 58326735 58327153 + 1.83333 NA intron (NM_002892, intron 8 of 23) L2c|LINE|L2 28389 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 241.833-14 chr8 136904826 136904990 + 1.83333 NA Intergenic Intergenic 374110 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 499.333-4 chr8 136020850 136021214 + 1.83333 NA Intergenic Intergenic -509766 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 211-37 chr4 109130800 109130991 + 1.83333 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 171763 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 206.5-50 chr6 127420330 127420660 + 1.83333 NA Intergenic Intergenic 38894 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 306.5-18 chrX 86264503 86264751 + 1.83333 NA intron (NM_001139515, intron 1 of 11) intron (NM_001139515, intron 1 of 11) 1659 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 386.666-3 chr11 5585857 5586151 + 1.83333 NA Intergenic Intergenic 5127 NM_001005162 340980 Hs.553704 NM_001005162 ENSG00000187747 OR52B6 OR11-47 olfactory receptor family 52 subfamily B member 6 protein-coding 195-4 chr10 97640438 97640614 + 1.83333 NA promoter-TSS (NM_018425) promoter-TSS (NM_018425) -160 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 261.5-36 chr8 18424859 18425041 + 1.83333 NA Intergenic Intergenic 33668 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 305.5-6 chr11 13803979 13804296 + 1.83333 NA intron (NR_149108, intron 3 of 3) L1ME3B|LINE|L1 19751 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 289.667-22 chr7 92262893 92263233 + 1.83333 NA intron (NM_019004, intron 1 of 19) intron (NM_019004, intron 1 of 19) -16963 NM_001350681 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 343.5-3 chr11 58905914 58906198 + 1.83333 NA intron (NM_001354699, intron 1 of 7) intron (NM_001354699, intron 1 of 7) 658 NM_001354699 92292 Hs.38085 NM_080661 ENSG00000166840 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase like 1 protein-coding 358.666-6 chr2 194545878 194546120 + 1.83333 NA Intergenic L1MA5|LINE|L1 -184596 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 365 chr1 78986728 78987132 + 1.83333 NA intron (NM_022159, intron 2 of 14) intron (NM_022159, intron 2 of 14) 19800 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 376.166-2 chr3 173372013 173372430 + 1.83333 NA Intergenic Intergenic -23731 NM_001365923 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 187-32 chr5 7904317 7904478 + 1.83333 NA Intergenic L1MC3|LINE|L1 35249 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 311.5-3 chr10 75508726 75508980 + 1.83333 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -43605 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 291.5-2 chr1 81885125 81885382 + 1.83333 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 82800 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 301.666-9 chr16 80027066 80027364 + 1.83333 NA Intergenic Intergenic 231966 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 361-16 chr8 63418182 63418765 + 1.83333 NA Intergenic Intergenic -47376 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 337-10 chr6 167908284 167908636 + 1.83333 NA intron (NM_001207008, intron 12 of 31) intron (NM_001207008, intron 12 of 31) 68479 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 348.833-4 chr4 131111679 131111989 + 1.83333 NA Intergenic Intergenic -653004 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 429.666-7 chr9 6306072 6306491 + 1.83333 NA Intergenic Intergenic -22094 NM_001001874 89882 Hs.351815 NM_033516 ENSG00000170777 TPD52L3 D55|NYDSP25|hD55 TPD52 like 3 protein-coding 183-14 chr12 89526104 89526277 + 1.83333 NA promoter-TSS (NM_001199782) promoter-TSS (NM_001199782) 72 NM_001199782 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 GALNT4|GalNAc-T4 POC1B-GALNT4 readthrough protein-coding 229.667-41 chr7 41979897 41980172 + 1.83333 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 257175 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 223.5-17 chr20 34872833 34872979 + 1.83333 NA promoter-TSS (NM_001351702) promoter-TSS (NM_001351702) -48 NM_001351702 2686 Hs.433738 NM_178026 ENSG00000131067 GGT7 D20S101|GGT4|GGTL3|GGTL5 gamma-glutamyltransferase 7 protein-coding 495-2 chr14 63633118 63633671 + 1.83333 NA intron (NM_080666, intron 1 of 2) intron (NM_080666, intron 1 of 2) 8477 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 208-7 chr10 58290493 58290701 + 1.83333 NA Intergenic Intergenic 21435 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 518.999-2 chr9 87974314 87974839 + 1.83333 NA promoter-TSS (NM_001170639) promoter-TSS (NM_001170639) -43 NM_001170639 23552 Hs.522274 NM_012119 ENSG00000156345 CDK20 CCRK|CDCH|P42|PNQALRE cyclin dependent kinase 20 protein-coding 391.833-6 chr20 57644074 57644515 + 1.83333 NA Intergenic L1MC3|LINE|L1 -23868 NR_136660 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 379.333-4 chr15 68673135 68673360 + 1.83333 NA intron (NM_006091, intron 2 of 11) MIR3|SINE|MIR 31744 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 282.666-3 chr17 40722408 40722631 + 1.83333 NA Intergenic Intergenic -18767 NM_019016 192666 Hs.87383 NM_019016 ENSG00000167916 KRT24 K24|KA24 keratin 24 protein-coding 532.499 chr5 23209055 23209552 + 1.83333 NA Intergenic LTR41|LTR|ERVL -298306 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 478-4 chr6 593035 593690 + 1.83333 NA intron (NM_018303, intron 10 of 27) intron (NM_018303, intron 10 of 27) 63602 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 372.5-7 chr17 34170261 34170602 + 1.83333 NA intron (NR_110748, intron 5 of 5) intron (NR_110748, intron 5 of 5) 13201 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 369.833-5 chr5 56288794 56289189 + 1.83333 NA Intergenic Intergenic -55661 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 312.333-19 chr5 8119811 8120081 + 1.83333 NA Intergenic L1M2|LINE|L1 250798 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 230.833-3 chr10 108361254 108361687 + 1.83333 NA Intergenic Intergenic -292177 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 516-2 chr11 23113104 23113745 + 1.83333 NA Intergenic LTR18B|LTR|ERVL -252950 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 518.167 chr9 73084397 73084820 + 1.83333 NA Intergenic Intergenic -67257 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 528.334-4 chr6 20289555 20290070 + 1.83333 NA Intergenic L1MEd|LINE|L1 -77343 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 369.999-2 chr3 81127600 81128035 + 1.83333 NA Intergenic L1M2|LINE|L1 133949 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 600.833-2 chr10 6401659 6402084 + 1.83333 NA intron (NM_001323267, intron 17 of 17) intron (NM_001323267, intron 17 of 17) 51555 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 458.001-4 chr2 9983918 9984741 + 1.83333 NA intron (NM_198182, intron 8 of 15) intron (NM_198182, intron 8 of 15) 32636 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 535 chr10 81173583 81174127 + 1.83333 NA Intergenic Intergenic 524058 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 226.333-4 chr14 48226304 48226553 + 1.83333 NA Intergenic Intergenic -431414 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 304.833-3 chr10 36277018 36277308 + 1.83333 NA Intergenic MIRb|SINE|MIR 498861 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 373.833-2 chr20 39896805 39897102 + 1.83333 NA Intergenic Intergenic -107508 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 369.167-6 chr3 45203869 45204157 + 1.83333 NA Intergenic L1ME3A|LINE|L1 22274 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 174.667-54 chr8 27832489 27832632 + 1.83333 NA intron (NM_001278945, intron 2 of 7) L1MEc|LINE|L1 5257 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 605.666-2 chr4 66574468 66575311 + 1.83333 NA Intergenic LTR25|LTR|ERV1 298065 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 391.167-4 chr12 6723912 6724253 + 1.83333 NA promoter-TSS (NM_001164093) promoter-TSS (NM_001164093) 36 NM_001164095 50813 Hs.530823 NM_016319 ENSG00000111652 COPS7A CSN7|CSN7A|SGN7a COP9 signalosome subunit 7A protein-coding 553.334-2 chr15 43903742 43904316 + 1.83333 NA intron (NM_032892, intron 6 of 13) intron (NM_032892, intron 6 of 13) -25858 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 303.499-2 chr3 274372 274607 + 1.83333 NA intron (NM_001253387, intron 2 of 26) intron (NM_001253387, intron 2 of 26) -45194 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 345-3 chr12 5872979 5873336 + 1.83333 NA intron (NM_001278596, intron 3 of 25) intron (NM_001278596, intron 3 of 25) 72102 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 524.166 chr7 19900013 19900534 + 1.83333 NA Intergenic Intergenic -126656 NM_001366626 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 409.666-4 chr2 100341827 100342283 + 1.83333 NA Intergenic Intergenic -19322 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 242.834-6 chr2 222959444 222959643 + 1.83333 NA Intergenic LTR16A2|LTR|ERVL -92387 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 292.333-11 chr2 132740911 132741109 + 1.83333 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -69484 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 512.167 chr11 111033063 111033591 + 1.83333 NA Intergenic L1PB3|LINE|L1 63991 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 345.5-22 chr9 85904167 85904418 + 1.83333 NA Intergenic Intergenic -36850 NM_001321881 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 313.167-5 chr12 20172817 20173195 + 1.83333 NA Intergenic L1MA3|LINE|L1 -45105 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 204-12 chr12 62073919 62074086 + 1.83333 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 118837 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 228.5-24 chr4 101071926 101072108 + 1.83333 NA intron (NM_001130691, intron 8 of 12) intron (NM_001130691, intron 8 of 12) 168855 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 511.834-2 chr10 116492129 116492907 + 1.83333 NA Intergenic L1ME4b|LINE|L1 -53413 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 422.666-2 chr1 65955245 65955655 + 1.83333 NA intron (NM_002600, intron 3 of 16) intron (NM_002600, intron 3 of 16) -37166 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 275.833-10 chr17 48623687 48624032 + 1.83333 NA intron (NM_024017, intron 1 of 1) intron (NM_024017, intron 1 of 1) 2499 NM_024017 3219 Hs.463350 NM_024017 ENSG00000170689 HOXB9 HOX-2.5|HOX2|HOX2E homeobox B9 protein-coding 249-25 chr3 111397368 111397542 + 1.83333 NA Intergenic L1MEc|LINE|L1 -144742 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 445.833-2 chr3 143971441 143971692 + 1.83333 NA promoter-TSS (NM_173552) promoter-TSS (NM_173552) -232 NM_001363944 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 418.666 chr12 49301802 49302125 + 1.83333 NA intron (NR_120449, intron 4 of 7) L2c|LINE|L2 6816 NM_006262 5630 Hs.37044 NM_006262 ENSG00000135406 PRPH NEF4|PRPH1 peripherin protein-coding 243-22 chr8 27872732 27873021 + 1.83333 NA intron (NM_173833, intron 8 of 8) intron (NM_173833, intron 8 of 8) 13240 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 353.333-14 chr9 76256029 76256359 + 1.83333 NA intron (NM_001190482, intron 24 of 36) intron (NM_001190482, intron 24 of 36) 138232 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 366-15 chr8 118234739 118235057 + 1.83333 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -123079 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 291.167-2 chr1 165927884 165928164 + 1.83333 NA Intergenic Intergenic 20103 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 404.666-7 chr6 43261333 43261703 + 1.83333 NA intron (NM_032538, intron 12 of 14) intron (NM_032538, intron 12 of 14) 18037 NM_032538 84630 Hs.485436 NM_032538 ENSG00000146216 TTBK1 BDTK tau tubulin kinase 1 protein-coding 238.167-18 chr2 231499351 231499582 + 1.83333 NA Intergenic L1ME4b|LINE|L1 14873 NR_024079 151477 Hs.375211 NM_173513 ENSG00000181798 LINC00471 C2orf52 long intergenic non-protein coding RNA 471 ncRNA 407.333-6 chr6 35330728 35331168 + 1.83333 NA Intergenic L1ME4c|LINE|L1 -11610 NM_001171819 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 323.166-3 chr16 54904045 54904531 + 1.83333 NA Intergenic L1MC1|LINE|L1 24490 NR_034106 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 205.833-27 chr7 130516243 130516457 + 1.83333 NA intron (NM_012133, intron 20 of 23) intron (NM_012133, intron 20 of 23) 20239 NR_029899 442904 NR_029899 ENSG00000199043 MIR335 MIRN335|hsa-mir-335|miRNA335|mir-335 microRNA 335 ncRNA 365.167-2 chr14 98604177 98604474 + 1.83333 NA Intergenic Intergenic -107288 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 432.334 chr12 39908979 39909333 + 1.83333 NA TTS (NR_135051) TTS (NR_135051) 196925 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 372.833-3 chr14 43785627 43785938 + 1.83333 NA Intergenic L1ME3A|LINE|L1 721501 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 220.833-25 chr8 56796760 56796948 + 1.83333 NA Intergenic MIRb|SINE|MIR 197013 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 439.166-2 chrX 39261586 39261852 + 1.83333 NA Intergenic Intergenic 65643 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 466.333-6 chr4 91108546 91108966 + 1.83333 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 873725 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 398.499 chr5 120042887 120043138 + 1.83333 NA Intergenic Intergenic 413453 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 567.334 chr3 197905777 197906505 + 1.83333 NA intron (NM_001323029, intron 9 of 11) LTR41C|LTR|ERVL 43784 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 296.333-17 chr6 23145022 23145324 + 1.83333 NA Intergenic Intergenic -427249 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 299.667 chr1 201644489 201644727 + 1.83333 NA Intergenic Intergenic -3714 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 357.667-8 chr19 51111679 51112157 + 1.83333 NA Intergenic L2c|LINE|L2 -3509 NM_145232 90353 Hs.148425 NM_145232 ENSG00000142544 CTU1 ATPBD3|NCS6 cytosolic thiouridylase subunit 1 protein-coding 196.166-2 chr3 128049227 128049476 + 1.83333 NA Intergenic Intergenic -3086 NM_013336 29927 Hs.518236 NM_013336 ENSG00000058262 SEC61A1 HNFJ4|HSEC61|SEC61|SEC61A SEC61 translocon alpha 1 subunit protein-coding 721.499 chr4 15756410 15757012 + 1.83333 NA Intergenic Intergenic -21617 NR_132660 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 413.666-4 chr7 46385186 46385591 + 1.83333 NA Intergenic L1MC1|LINE|L1 311734 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 477.167 chr1 180009627 180010008 + 1.83333 NA intron (NM_014810, intron 8 of 37) intron (NM_014810, intron 8 of 37) 55007 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 475.333-3 chr11 3797317 3797917 + 1.83333 NA promoter-TSS (NM_001365127) promoter-TSS (NM_001365127) -63 NM_016320 4928 Hs.524750 NM_005387 ENSG00000110713 NUP98 ADIR2|NUP196|NUP96 nucleoporin 98 protein-coding 336-4 chr1 244599795 244600166 + 1.83333 NA intron (NM_001130957, intron 17 of 21) L2b|LINE|L2 -53068 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 388.833-3 chr5 161187676 161187959 + 1.83333 NA Intergenic L1MB5|LINE|L1 -249191 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 260.166-3 chr14 88532857 88533032 + 1.83333 NA intron (NM_007039, intron 2 of 18) intron (NM_007039, intron 2 of 18) 22063 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 244.333-14 chr2 64647730 64647995 + 1.83333 NA intron (NM_014755, intron 1 of 1) intron (NM_014755, intron 1 of 1) 6051 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 273.666-6 chr3 39092445 39092739 + 1.83333 NA intron (NR_144401, intron 18 of 19) intron (NR_144401, intron 18 of 19) 15035 NR_103866 64689 Hs.721946 NM_031899 ENSG00000114745 GORASP1 GOLPH5|GRASP65|P65 golgi reassembly stacking protein 1 protein-coding 263.334-9 chr5 18169022 18169285 + 1.83333 NA Intergenic L1M4|LINE|L1 361879 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 239-25 chr3 111991871 111992213 + 1.83333 NA non-coding (NR_073570, exon 4 of 4) non-coding (NR_073570, exon 4 of 4) -6697 NM_013259 29114 Hs.169330 NM_013259 ENSG00000144834 TAGLN3 NP22|NP24|NP25 transgelin 3 protein-coding 369.333-2 chr14 63638523 63638778 + 1.83333 NA intron (NM_080666, intron 1 of 2) Charlie16a|DNA|hAT-Charlie 3221 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 338.833-3 chr10 64531458 64531810 + 1.83333 NA Intergenic Intergenic -293894 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 174.5-7 chr11 127798608 127798730 + 1.83333 NA Intergenic L1MEf|LINE|L1 -410097 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 414.832 chr6 53485988 53486239 + 1.83333 NA Intergenic MIR|SINE|MIR 58988 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 228-26 chr2 210077160 210077323 + 1.83333 NA intron (NM_001307976, intron 5 of 13) intron (NM_001307976, intron 5 of 13) 47319 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 380.833-5 chr5 97411398 97411724 + 1.83333 NA Intergenic Intergenic -93135 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 234.167-23 chr6 25718125 25718379 + 1.83333 NA Intergenic Intergenic 8310 NM_170745 221613 Hs.406739 NM_170745 ENSG00000164508 HIST1H2AA H2AA|H2AFR|TH2A|bA317E16.2 histone cluster 1 H2A family member a protein-coding 168.166-2 chr4 75490375 75490486 + 1.83333 NA intron (NM_015436, intron 8 of 8) intron (NM_015436, intron 8 of 8) 18866 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 218.833-11 chr17 71209237 71209369 + 1.83333 NA Intergenic Intergenic -7124 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 216.333-20 chr17 65951051 65951223 + 1.83333 NA intron (NM_001353129, intron 18 of 26) L1M4|LINE|L1 -124594 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 400 chr1 56797697 56798146 + 1.83333 NA intron (NM_001004303, intron 1 of 19) L2a|LINE|L2 21483 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 326.166-2 chr13 70658471 70658858 + 1.83333 NA Intergenic Intergenic -356477 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 263.833-11 chr7 85040471 85040669 + 1.83333 NA intron (NM_152754, intron 9 of 16) L1ME4b|LINE|L1 81361 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 269.666-4 chr9 71557592 71557813 + 1.83333 NA Intergenic Intergenic -110731 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 379.333-8 chr3 95898792 95899046 + 1.83333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -215726 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 291.333-21 chr8 80932123 80932487 + 1.83333 NA Intergenic Intergenic -57524 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 642.333 chr1 241834895 241835558 + 1.83333 NA Intergenic Intergenic -12965 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 366-14 chr8 103124738 103125132 + 1.83333 NA intron (NR_145429, intron 1 of 5) intron (NR_145429, intron 1 of 5) 3903 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 325.5-19 chr5 180493514 180493773 + 1.83333 NA promoter-TSS (NM_001370472) promoter-TSS (NM_001370472) -736 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 191.833-4 chr10 50518072 50518273 + 1.83333 NA intron (NM_147156, intron 3 of 10) L1MEd|LINE|L1 105784 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 420.333-3 chr4 110302595 110302986 + 1.83333 NA Intergenic L1MB8|LINE|L1 -104175 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 313.666-7 chr8 133984326 133984605 + 1.83333 NA Intergenic Intergenic 97969 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 397.499 chr2 17716955 17717263 + 1.83333 NA exon (NM_001142286, exon 13 of 28) exon (NM_001142286, exon 13 of 28) 36701 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 391.333-7 chr8 41995141 41995462 + 1.83333 NA intron (NM_001305878, intron 2 of 13) intron (NM_001305878, intron 2 of 13) -56449 NR_136589 105379393 Hs.742878 NR_136589 LOC105379393 - uncharacterized LOC105379393 ncRNA 341.333-10 chr3 123525465 123525774 + 1.83333 NA intron (NM_001329786, intron 3 of 5) intron (NM_001329786, intron 3 of 5) 58998 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 360.5 chr1 152466396 152466802 + 1.83333 NA Intergenic L1MEg|LINE|L1 -44204 NM_178438 254910 Hs.516410 NM_178438 ENSG00000186207 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 270.166-7 chr6 46074166 46074346 + 1.83333 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 6092 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 578 chr7 35037744 35038291 + 1.83333 NA promoter-TSS (NM_001366673) promoter-TSS (NM_001366673) 24 NM_015283 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 341.167-5 chr11 19066801 19067230 + 1.83333 NA Intergenic L1PA7|LINE|L1 -6298 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 312.333 chr1 175296128 175296422 + 1.83333 NA Intergenic MER101-int|LTR|ERV1 -103288 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 265.666-9 chr7 8277315 8277595 + 1.83333 NA intron (NR_125740, intron 3 of 5) intron (NR_125740, intron 3 of 5) -14843 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 424.166-2 chr19 8253159 8253451 + 1.83333 NA intron (NM_024552, intron 3 of 11) intron (NM_024552, intron 3 of 11) 43935 NM_024552 79603 Hs.515111 NM_024552 ENSG00000090661 CERS4 LASS4|Trh1 ceramide synthase 4 protein-coding 500.666 chr2 65255909 65256254 + 1.83333 NA intron (NM_001005386, intron 7 of 9) intron (NM_001005386, intron 7 of 9) 28386 NM_001005386 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 412.499 chr3 158353727 158354173 + 1.83333 NA intron (NM_001271838, intron 5 of 9) intron (NM_001271838, intron 5 of 9) -172758 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 274.5-23 chr5 173901005 173901158 + 1.83333 NA intron (NM_001308192, intron 1 of 8) intron (NM_001308192, intron 1 of 8) 8030 NM_001308193 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 344.834 chr13 31563802 31564044 + 1.83333 NA Intergenic Intergenic -175603 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 407-2 chr20 59650489 59650897 + 1.83333 NA intron (NM_001281507, intron 1 of 12) L1M5|LINE|L1 22084 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 355.5-5 chr6 64948958 64949311 + 1.83333 NA intron (NM_001292009, intron 14 of 43) intron (NM_001292009, intron 14 of 43) -352284 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 179-31 chr5 125648240 125648435 + 1.83333 NA Intergenic L1PB1|LINE|L1 155076 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 293.5-16 chr3 150177911 150178182 + 1.83333 NA Intergenic Intergenic -60473 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 352.5-7 chr16 49632419 49632773 + 1.83333 NA intron (NM_001271620, intron 4 of 7) MIR3|SINE|MIR 31728 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 186.166-6 chrX 16256507 16256728 + 1.83333 NA Intergenic Intergenic 89136 NM_001277307 645864 Hs.632792 NM_001277307 ENSG00000182798 MAGEB17 - MAGE family member B17 protein-coding 357.833-7 chr3 118124266 118124690 + 1.83333 NA Intergenic L1ME1|LINE|L1 -433553 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 501.834 chr1 26619989 26620454 + 1.83333 NA Intergenic Intergenic 65679 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 291.834 chr3 151379272 151379536 + 1.83333 NA intron (NM_053002, intron 29 of 42) intron (NM_053002, intron 29 of 42) 5408 NM_022788 64805 Hs.591281 NM_022788 ENSG00000169313 P2RY12 ADPG-R|BDPLT8|HORK3|P2T(AC)|P2Y(12)R|P2Y(AC)|P2Y(ADP)|P2Y(cyc)|P2Y12|SP1999 purinergic receptor P2Y12 protein-coding 409.667-9 chr9 30749474 30749828 + 1.83333 NA Intergenic L1MA8|LINE|L1 -341197 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 170-32 chr2 72376175 72376276 + 1.83333 NA intron (NR_135774, intron 17 of 19) L1MEf|LINE|L1 -228363 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 391.167-10 chr7 39091625 39092040 + 1.83333 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -78265 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 271.833-14 chr7 64906183 64906453 + 1.83333 NA intron (NM_021148, intron 1 of 3) intron (NM_021148, intron 1 of 3) 3076 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 529.334 chr4 33160104 33160808 + 1.83333 NA Intergenic MER20|DNA|hAT-Charlie 809418 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 712-2 chr2 229586862 229587521 + 1.83333 NA intron (NM_139072, intron 3 of 12) intron (NM_139072, intron 3 of 12) 127364 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 413.333-13 chr8 105022168 105022438 + 1.83333 NA Intergenic MSTA|LTR|ERVL-MaLR -296135 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 315.499-3 chr8 129212738 129213023 + 1.83333 NA Intergenic Intergenic 28360 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 319.5-11 chr3 25656095 25656386 + 1.83333 NA intron (NM_001330700, intron 1 of 35) intron (NM_001330700, intron 1 of 35) 8132 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 433.499-4 chr9 28506505 28506837 + 1.83333 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 212634 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 576.5-3 chr3 45667835 45668407 + 1.83333 NA intron (NM_014240, intron 3 of 7) intron (NM_014240, intron 3 of 7) 20761 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 353.666 chr16 54555878 54556161 + 1.83333 NA Intergenic Tigger5b|DNA|TcMar-Tigger -185320 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 217.166-4 chr3 70849953 70850080 + 1.83333 NA Intergenic Intergenic 214908 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 366-16 chr8 120971830 120972148 + 1.83333 NA Intergenic L1ME3E|LINE|L1 -159943 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 292.333 chr1 40176021 40176300 + 1.83333 NA intron (NM_012421, intron 1 of 7) L1ME1|LINE|L1 14773 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 193.167-34 chr9 30235321 30235494 + 1.83333 NA Intergenic Intergenic 173047 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 250.166-2 chr2 22044698 22044848 + 1.83333 NA Intergenic L1ME2|LINE|L1 -334121 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 324.167-5 chr11 67356778 67357279 + 1.83333 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) -3432 NR_046413 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 670.834 chr20 16434226 16434800 + 1.83333 NA intron (NM_001199866, intron 12 of 22) intron (NM_001199866, intron 12 of 22) 138935 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 448.834-4 chr3 27239229 27239583 + 1.83333 NA intron (NM_199347, intron 24 of 24) intron (NM_199347, intron 24 of 24) -22883 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 429.333-2 chr15 85735928 85736399 + 1.83333 NA intron (NM_007200, intron 33 of 36) intron (NM_007200, intron 33 of 36) 22562 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 633.5-3 chr8 56030448 56031187 + 1.83333 NA Intergenic L1MA4|LINE|L1 43084 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 296.667-14 chr3 105931024 105931328 + 1.83333 NA Intergenic MamTip2|DNA|hAT-Tip100 -61775 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 426.833-4 chr4 129641412 129641840 + 1.83333 NA Intergenic Intergenic 129852 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 548.499-2 chr8 81417543 81417989 + 1.83333 NA Intergenic Intergenic 29673 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 799 chr12 52213214 52214127 + 1.83333 NA intron (NR_027358, intron 3 of 4) intron (NR_027358, intron 3 of 4) 2740 NR_027358 283404 Hs.662443 NR_027358 ENSG00000258279 LINC00592 - long intergenic non-protein coding RNA 592 ncRNA 440.333-8 chr8 132319379 132320015 + 1.83333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 127565 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 338.166-2 chr8 28367898 28368179 + 1.83333 NA intron (NM_018660, intron 1 of 9) intron (NM_018660, intron 1 of 9) 18422 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 278.666-2 chr12 122752572 122752822 + 1.83333 NA promoter-TSS (NM_003677) promoter-TSS (NM_003677) -127 NM_003677 8562 Hs.22393 NM_003677 ENSG00000139726 DENR DRP|DRP1|SMAP-3 density regulated re-initiation and release factor protein-coding 387.666-3 chrX 135740728 135740978 + 1.83333 NA Intergenic LTR41|LTR|ERVL 27140 NM_001370149 441519 Hs.535080 NM_001017435 ENSG00000269096 CT45A3 CT45-3|CT45-4|CT45.3|CT45.4|CT45A4 cancer/testis antigen family 45 member A3 protein-coding 410.667-5 chr19 45338460 45338883 + 1.83333 NA Intergenic L2b|LINE|L2 -2079 NM_177417 147700 Hs.298079 NM_145275 ENSG00000104892 KLC3 KLC2|KLC2L|KLCt|KNS2B kinesin light chain 3 protein-coding 410.667-7 chr6 17086175 17086677 + 1.83333 NA Intergenic Intergenic -15832 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 330.5-6 chr3 78656787 78657176 + 1.83333 NA intron (NM_002941, intron 18 of 30) intron (NM_002941, intron 18 of 30) 362478 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 472.5-7 chr6 106798371 106798734 + 1.83333 NA Intergenic Intergenic -11011 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 245.666-9 chr5 53472680 53473083 + 1.83333 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -7748 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 175-58 chr9 78964071 78964232 + 1.83333 NA Intergenic Intergenic 181515 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 202.667-40 chr8 72917650 72917854 + 1.83333 NA intron (NM_004770, intron 2 of 2) MamTip2|DNA|hAT-Tip100 -91112 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 283.666-4 chr20 48339109 48339364 + 1.83333 NA Intergenic Intergenic -20675 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 843.166 chr4 80989635 80990529 + 1.83333 NA Intergenic Intergenic -40626 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 600.001-3 chr6 73461414 73461979 + 1.83333 NA promoter-TSS (NM_012123) promoter-TSS (NM_012123) -41 NM_001123226 25821 Hs.347614 NM_012123 ENSG00000135297 MTO1 CGI-02|COXPD10 mitochondrial tRNA translation optimization 1 protein-coding 448.333-3 chr3 107643189 107643640 + 1.83333 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 120452 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 356.166 chr14 52337956 52338308 + 1.83333 NA Intergenic Intergenic 23820 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 214.167-17 chr20 48775535 48775767 + 1.83333 NA intron (NM_020820, intron 1 of 39) THE1B|LTR|ERVL-MaLR 52348 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 377.999 chr1 75878887 75879281 + 1.83333 NA exon (NM_002440, exon 12 of 20) exon (NM_002440, exon 12 of 20) 53320 NM_080868 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 390.834-3 chr10 127867974 127868405 + 1.83333 NA Intergenic Intergenic 24752 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 192.833-9 chr11 65526682 65526857 + 1.83333 NA intron (NM_020680, intron 4 of 17) intron (NM_020680, intron 4 of 17) 1686 NM_020680 57410 Hs.238839 NM_020680 ENSG00000142186 SCYL1 GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP SCY1 like pseudokinase 1 protein-coding 339.166-2 chr2 10976463 10976709 + 1.83333 NA Intergenic Intergenic 64652 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 390-8 chr5 35779851 35780242 + 1.83333 NA intron (NM_024867, intron 30 of 36) MIR|SINE|MIR -76845 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 398-14 chr3 38165148 38165423 + 1.83333 NA promoter-TSS (NM_005109) promoter-TSS (NM_005109) -252 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 400-8 chr22 22220318 22220547 + 1.83333 NA Intergenic Intergenic -24354 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 251-35 chr8 120861349 120861653 + 1.83333 NA Intergenic L1PBa|LINE|L1 -49455 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 277-4 chr1 39701807 39702219 + 1.83333 NA Intergenic Intergenic -10528 NM_001282396 51440 Hs.743975 NM_016257 ENSG00000116983 HPCAL4 HLP4 hippocalcin like 4 protein-coding 215.666-4 chr2 116169186 116169369 + 1.83333 NA Intergenic Intergenic 825462 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 252.333-16 chr7 74450048 74450308 + 1.83333 NA Intergenic Intergenic -3728 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 359.999-2 chr2 42253216 42253420 + 1.83333 NA intron (NM_001145076, intron 2 of 21) L2|LINE|L2 -83087 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 164.167-50 chr8 77906360 77906515 + 1.83333 NA Intergenic Intergenic 455740 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 498.666 chr6 124795831 124796371 + 1.83333 NA intron (NM_001040214, intron 5 of 6) intron (NM_001040214, intron 5 of 6) -166444 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 277-31 chr7 105146565 105146838 + 1.83333 NA intron (NM_182692, intron 7 of 15) intron (NM_182692, intron 7 of 15) 122376 NM_001350744 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 344.833-12 chr9 73079446 73079802 + 1.83333 NA Intergenic Intergenic -72241 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 349.833-12 chr7 137899244 137899504 + 1.83333 NA intron (NM_001318246, intron 8 of 11) intron (NM_001318246, intron 8 of 11) 33614 NM_001318246 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 300-10 chr2 58885531 58885736 + 1.83333 NA intron (NR_033873, intron 3 of 13) MIR3|SINE|MIR -332075 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 447.5-4 chr15 88886515 88886859 + 1.83333 NA intron (NM_001307952, intron 3 of 5) AluSx|SINE|Alu 8857 NM_178232 145864 Hs.447530 NM_178232 ENSG00000140511 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 244.166-2 chr11 13239635 13239899 + 1.83333 NA Intergenic Intergenic -36885 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 346.833-12 chr9 135407667 135407957 + 1.83333 NA Intergenic L1M5|LINE|L1 64437 NR_038969 100506599 Hs.561897 NR_038969 ENSG00000225361 PPP1R26-AS1 - PPP1R26 antisense RNA 1 ncRNA 240.666-10 chr6 75460711 75460926 + 1.83333 NA intron (NR_110608, intron 1 of 1) intron (NR_110608, intron 1 of 1) 32411 NR_039670 100616389 NR_039670 ENSG00000263533 MIR4463 - microRNA 4463 ncRNA 245.5-17 chr22 31389829 31390015 + 1.83333 NA Intergenic L1M5|LINE|L1 -9682 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 304.499-3 chr5 109804571 109804741 + 1.83333 NA intron (NM_002372, intron 12 of 21) intron (NM_002372, intron 12 of 21) -78526 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 277-21 chr4 99707243 99707491 + 1.83333 NA Intergenic L1M5|LINE|L1 -52688 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 205-24 chr5 113477834 113478012 + 1.83333 NA intron (NM_001085377, intron 1 of 18) L1MEc|LINE|L1 10530 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 234.667-35 chr9 95655108 95655355 + 1.83333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -138174 NM_001354919 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 318-3 chr11 5771188 5771439 + 1.83333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 7354 NM_001001922 390075 Hs.690207 NM_001001922 ENSG00000181009 OR52N5 OR11-62|OR52N5Q olfactory receptor family 52 subfamily N member 5 protein-coding 310.999-2 chr2 12737311 12737525 + 1.83333 NA promoter-TSS (NR_036072) promoter-TSS (NR_036072) 51 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 223.166-6 chr9 12701995 12702290 + 1.83333 NA intron (NR_125775, intron 3 of 3) intron (NR_125775, intron 3 of 3) 8757 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 240.333-7 chr17 16438659 16438933 + 1.83333 NA promoter-TSS (NR_027179) promoter-TSS (NR_027179) -191 NR_027172 125144 Hs.368934 NM_152350 ENSG00000175061 SNHG29 C17orf45|C17orf76-AS1|FAM211A-AS1|LRRC75A-AS1|NCRNA00188|TSAP19 small nucleolar RNA host gene 29 ncRNA 186.166-4 chr2 233784130 233784292 + 1.83333 NA intron (NM_001367507, intron 3 of 41) L1MA5|LINE|L1 8487 NM_001367507 339766 Hs.361778 NM_001287395 ENSG00000185038 MROH2A HEATR7B1 maestro heat like repeat family member 2A protein-coding 300.166-3 chr22 25297839 25298329 + 1.83333 NA Intergenic L1PA16|LINE|L1 -20173 NR_029395 91353 Hs.651077 NM_001013618 IGLL3P 16.1|IGLL3 immunoglobulin lambda like polypeptide 3, pseudogene pseudo 366.5-9 chr8 102909177 102909480 + 1.83333 NA intron (NR_126339, intron 2 of 2) L1MA9|LINE|L1 45057 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 440.333-7 chr7 22559818 22560258 + 1.83333 NA Intergenic Intergenic -3299 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 369.5-10 chr19 46826629 46826992 + 1.83333 NA Intergenic Intergenic 3894 NR_024258 100170220 Hs.541243 NR_024258 SNAR-E - small NF90 (ILF3) associated RNA E snRNA 397.499-2 chr5 6622189 6622481 + 1.83333 NA intron (NM_017755, intron 5 of 18) intron (NM_017755, intron 5 of 18) 10709 NM_017755 54888 Hs.481526 NM_017755 ENSG00000037474 NSUN2 MISU|MRT5|SAKI|TRM4 NOP2/Sun RNA methyltransferase 2 protein-coding 502.499 chr1 197527900 197528265 + 1.83333 NA intron (NR_125340, intron 17 of 19) intron (NR_125340, intron 17 of 19) 247398 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 754.499 chr12 70576809 70577518 + 1.83333 NA intron (NM_001109754, intron 10 of 33) intron (NM_001109754, intron 10 of 33) 32861 NM_002837 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 521.833-2 chr11 31233177 31234049 + 1.83333 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 136126 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 345.999 chr1 164726255 164726620 + 1.83333 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 48204 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 419.666 chr1 28937635 28938008 + 1.83333 NA intron (NM_001166006, intron 1 of 14) L1MC3|LINE|L1 23245 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 541.999 chr14 71022442 71022841 + 1.83333 NA intron (NM_014982, intron 12 of 35) intron (NM_014982, intron 12 of 35) 115182 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 281.333-24 chr5 138654613 138654870 + 1.83333 NA Intergenic Intergenic -79340 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 451 chr14 64478834 64479263 + 1.83333 NA 3' UTR (NM_001354684, exon 4 of 4) 3' UTR (NM_001354684, exon 4 of 4) 13549 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 565.499-2 chr5 73201876 73202476 + 1.83333 NA promoter-TSS (NR_134291) promoter-TSS (NR_134291) -215 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 265.166-2 chr20 63079047 63079251 + 1.83333 NA intron (NR_033370, intron 1 of 4) L1MB3|LINE|L1 -22143 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 425 chr1 35966163 35966555 + 1.83333 NA intron (NM_177422, intron 2 of 16) intron (NM_177422, intron 2 of 16) 35254 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 339.667-16 chr7 3158873 3159182 + 1.83333 NA promoter-TSS (NR_126024) promoter-TSS (NR_126024) -454 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 283-9 chr2 33217018 33217255 + 1.83333 NA intron (NM_206943, intron 7 of 33) intron (NM_206943, intron 7 of 33) 82539 NM_001166266 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 237.833-11 chr2 69484768 69485011 + 1.83333 NA intron (NM_014911, intron 17 of 21) AluSx|SINE|Alu 35282 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 306.667-22 chr7 77299861 77300093 + 1.83333 NA Intergenic L1MA5A|LINE|L1 -100158 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 484.667-2 chr7 95684080 95684506 + 1.83333 NA Intergenic Intergenic -87777 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 336.666-3 chr7 34107039 34107337 + 1.83333 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 201649 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 273.5-11 chr17 71046648 71046958 + 1.83333 NA Intergenic L1ME2|LINE|L1 155376 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 354.666 chr1 12041489 12041761 + 1.83333 NA Intergenic Intergenic 12467 NR_106787 102466982 NR_106787 ENSG00000276869 MIR6729 hsa-mir-6729 microRNA 6729 ncRNA 433.333-5 chr21 32940232 32940681 + 1.83333 NA Intergenic Intergenic -18432 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 301.333-3 chr11 59140226 59140421 + 1.83333 NA intron (NR_110184, intron 1 of 3) intron (NR_110184, intron 1 of 3) -2423 NM_001142520 63901 Hs.150651 NM_022074 ENSG00000166801 FAM111A GCLEB|KCS2 family with sequence similarity 111 member A protein-coding 361.5-8 chr18 4090272 4090574 + 1.83333 NA intron (NM_001242761, intron 2 of 11) L1PA10|LINE|L1 128070 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 487-2 chr5 35089652 35090270 + 1.83333 NA intron (NR_037910, intron 1 of 7) intron (NR_037910, intron 1 of 7) 28161 NM_001204316 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 256.166-4 chr6 120570590 120570748 + 1.83333 NA Intergenic Intergenic 555490 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 893.999 chr11 71086133 71086921 + 1.83333 NA intron (NM_012309, intron 7 of 24) (TTATATA)n|Simple_repeat|Simple_repeat 138269 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 258.833-16 chr6 134400907 134401158 + 1.83333 NA Intergenic MIRb|SINE|MIR -36684 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 697.666 chr3 82496968 82497698 + 1.83333 NA Intergenic MLT1E|LTR|ERVL-MaLR 511191 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 419.667 chr11 34925860 34926244 + 1.83333 NA intron (NM_003477, intron 1 of 10) intron (NM_003477, intron 1 of 10) 9434 NM_003477 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 288.5-23 chr5 22217408 22217690 + 1.83333 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -3699 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 321.333-12 chr5 77645357 77645606 + 1.83333 NA Intergenic CpG -6784 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 653.333 chr16 71367287 71367857 + 1.83333 NA intron (NM_001740, intron 1 of 10) intron (NM_001740, intron 1 of 10) 8849 NR_027910 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 297.666-2 chr4 143773930 143774178 + 1.83333 NA Intergenic L1PA16|LINE|L1 55294 NR_134680 105377458 Hs.738046 NR_134680 LOC105377458 - uncharacterized LOC105377458 ncRNA 438.333-2 chr1 58155586 58155840 + 1.83333 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 94790 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 223.167-11 chr2 158549229 158549446 + 1.83333 NA intron (NM_001005476, intron 2 of 20) intron (NM_001005476, intron 2 of 20) 92385 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 322.833-6 chr4 64228111 64228342 + 1.83333 NA Intergenic Intergenic 181224 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 446.5-3 chr17 50151763 50152186 + 1.83333 NA Intergenic Intergenic -1297 NM_032595 84687 Hs.514323 NM_032595 ENSG00000108819 PPP1R9B PPP1R6|PPP1R9|SPINO|Spn protein phosphatase 1 regulatory subunit 9B protein-coding 795.834 chr2 55992350 55992974 + 1.83333 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) -3603 NR_029629 406998 NR_029629 ENSG00000207798 MIR216A MIR216|MIRN216|MIRN216A|miRNA216|mir-216|mir-216a microRNA 216a ncRNA 401.5-2 chr16 27457035 27457353 + 1.83333 NA Intergenic Intergenic -3801 NR_037158 283888 Hs.660935 NR_037158 ENSG00000259954 IL21R-AS1 - IL21R antisense RNA 1 ncRNA 308.334-3 chr2 167252184 167252475 + 1.83333 NA intron (NM_001199144, intron 7 of 8) intron (NM_001199144, intron 7 of 8) 64957 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 536.333-2 chr22 36465314 36465895 + 1.83333 NA Intergenic MIRb|SINE|MIR 16036 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2|TXN thioredoxin 2 protein-coding 261.833 chr1 182849465 182849689 + 1.83333 NA intron (NM_001357, intron 3 of 27) MER20|DNA|hAT-Charlie -9986 NR_148933 647070 Hs.191518 NR_148933 LOC647070 - uncharacterized LOC647070 ncRNA 398.833-3 chr18 79990473 79990704 + 1.83333 NA intron (NM_001305564, intron 1 of 2) intron (NM_001305564, intron 1 of 2) -2025 NM_001303471 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 1051.83-2 chr15 84034807 84035927 + 1.83333 NA intron (NM_207517, intron 28 of 29) MamTip3|DNA|hAT-Tip100 -44820 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 436.833-3 chr14 55721074 55721762 + 1.83333 NA Intergenic MIR|SINE|MIR -44827 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 258.666-7 chr15 70865339 70865549 + 1.83333 NA intron (NM_001284357, intron 1 of 16) L1MC5a|LINE|L1 -11287 NM_018357 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 195.5-33 chr7 42417237 42417559 + 1.83333 NA Intergenic Intergenic -180189 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 474.001-2 chr4 77949457 77949974 + 1.83333 NA intron (NM_020236, intron 7 of 8) intron (NM_020236, intron 7 of 8) 86885 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 168.833-9 chr17 76872570 76872750 + 1.83333 NA promoter-TSS (NM_198955) promoter-TSS (NM_198955) 13 NM_198955 146664 Hs.144531 NM_144677 ENSG00000167889 MGAT5B GnT-IX|GnT-VB alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B protein-coding 383.167-4 chr14 57615024 57615393 + 1.83333 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -121351 NM_001283056 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 242.333-6 chr11 116412647 116412936 + 1.83333 NA Intergenic MER92B|LTR|ERV1 -226631 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 337.333-8 chr2 132934948 132935296 + 1.83333 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) 19565 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 220.167-29 chr7 152024182 152024399 + 1.83333 NA Intergenic Charlie2b|DNA|hAT-Charlie -1384 NM_001371461 499 chr11 72812621 72813498 + 1.83333 NA Intergenic L2b|LINE|L2 -1352 NM_033388 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 323.833-9 chr7 45678362 45678587 + 1.83333 NA intron (NM_021116, intron 10 of 19) intron (NM_021116, intron 10 of 19) 90544 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 226.333-10 chr18 36358977 36359160 + 1.83333 NA intron (NM_001281740, intron 2 of 28) intron (NM_001281740, intron 2 of 28) 61355 NM_001281740 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 256-12 chr16 67935284 67935886 + 1.83333 NA exon (NM_002801, exon 5 of 8) exon (NM_002801, exon 5 of 8) 1265 NM_002801 5699 Hs.9661 NM_002801 ENSG00000205220 PSMB10 LMP10|MECL1|beta2i proteasome subunit beta 10 protein-coding 405.833-6 chr3 87517696 87518096 + 1.83333 NA Intergenic Intergenic -241312 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 280.333-6 chr12 42079874 42080035 + 1.83333 NA Intergenic Intergenic 64920 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 253.167-23 chr8 31785987 31786209 + 1.83333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 146346 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 269-11 chr17 35692534 35692717 + 1.83333 NA intron (NM_001030006, intron 18 of 21) intron (NM_001030006, intron 18 of 21) -39014 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 342.333-5 chr17 61857541 61858147 + 1.83333 NA intron (NM_032043, intron 3 of 19) intron (NM_032043, intron 3 of 19) 5715 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 339-4 chr19 10852275 10852633 + 1.83333 NA intron (NM_001136482, intron 2 of 6) intron (NM_001136482, intron 2 of 6) 4039 NM_001136482 255809 Hs.440535 NM_001136482 ENSG00000214212 C19orf38 HIDE1 chromosome 19 open reading frame 38 protein-coding 328.167-9 chr6 44247056 44247327 + 1.83333 NA promoter-TSS (NM_007355) promoter-TSS (NM_007355) 90 NM_007355 3326 Hs.509736 NM_007355 ENSG00000096384 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90 alpha family class B member 1 protein-coding 317-9 chr20 49333822 49334048 + 1.83333 NA Intergenic Intergenic 53252 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 335-4 chr14 27749928 27750253 + 1.83333 NA Intergenic L1MC2|LINE|L1 -76869 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 210-16 chr16 55551348 55551644 + 1.83333 NA intron (NM_017839, intron 11 of 13) intron (NM_017839, intron 11 of 13) -15188 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 CSS2 calpain small subunit 2 protein-coding 348.167-12 chr6 139540843 139541137 + 1.83333 NA Intergenic Intergenic -66394 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 239.167-11 chr13 93252397 93252628 + 1.83333 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 25705 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 380.166 chr13 100039947 100040326 + 1.83333 NA Intergenic Intergenic -42227 NR_047483 100861542 Hs.508571 NR_047483 ENSG00000260738 LINC00554 lncZic2 long intergenic non-protein coding RNA 554 ncRNA 592.334 chr1 154272089 154272595 + 1.83333 NA promoter-TSS (NM_001018837) promoter-TSS (NM_001018837) -221 NM_006118 10456 Hs.199625 NM_006118 ENSG00000143575 HAX1 HCLSBP1|HS1BP1|SCN3 HCLS1 associated protein X-1 protein-coding 440.833-4 chr3 113746093 113747002 + 1.83333 NA promoter-TSS (NM_001308445) promoter-TSS (NM_001308445) -298 NM_025146 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 410.166 chr14 46950793 46951163 + 1.83333 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -299197 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 404.666-10 chr8 109703123 109703530 + 1.83333 NA Intergenic Intergenic -11535 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 307.166-4 chr2 67261107 67261294 + 1.83333 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) -45881 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 212.5-36 chr9 6765746 6765861 + 1.83333 NA intron (NR_148680, intron 1 of 21) AluSx|SINE|Alu 8453 NM_001304339 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 376.666-4 chr2 75053461 75054064 + 1.83333 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) -37050 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 406.333-3 chr17 47972066 47972620 + 1.83333 NA intron (NM_176096, intron 2 of 13) intron (NM_176096, intron 2 of 13) 1230 NM_176096 80279 Hs.20157 NM_025197 ENSG00000108465 CDK5RAP3 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553 CDK5 regulatory subunit associated protein 3 protein-coding 189.334-3 chr15 61968670 61968884 + 1.83333 NA intron (NM_001018088, intron 28 of 81) intron (NM_001018088, intron 28 of 81) 91670 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 163.5-36 chr5 62370044 62370171 + 1.83333 NA intron (NM_001243952, intron 17 of 20) intron (NM_001243952, intron 17 of 20) 33798 NM_001348076 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIMT1 rRNA methyltransferase and ribosome maturation factor protein-coding 437.999 chr16 78686916 78687208 + 1.83333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 587408 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 485.333-7 chr6 114791115 114791531 + 1.83333 NA Intergenic MER46C|DNA|TcMar-Tigger -728446 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 199.667-37 chr5 64613217 64613399 + 1.83333 NA TTS (NM_001029875) TTS (NM_001029875) 37658 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 360.833-4 chr21 36028676 36028904 + 1.83333 NA Intergenic Intergenic 23470 NR_110419 100996609 Hs.742062 NR_110419 LINC01436 - long intergenic non-protein coding RNA 1436 ncRNA 431.333-3 chr17 19111111 19111539 + 1.83333 NA Intergenic AluJo|SINE|Alu 1311 NR_006882 780854 NR_006882 ENSG00000281000 SNORD3D RNU3-4|U3-4 small nucleolar RNA, C/D box 3D snoRNA 201.833-19 chr8 66348555 66348700 + 1.83333 NA Intergenic Intergenic 80350 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 426-6 chr14 56247453 56247939 + 1.83333 NA intron (NM_021255, intron 2 of 5) L3|LINE|CR1 129285 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 333.833-6 chr17_GL000205v2_random 54532 54863 + 1.83333 NA TTS (NR_003682) TTS (NR_003682) 3269 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 170.333-8 chr10 118424615 118424949 + 1.83333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 67674 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 376.666-5 chr4 56798923 56799323 + 1.83333 NA Intergenic Intergenic 22350 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 343.999 chr1 80862455 80862676 + 1.83333 NA Intergenic L1MB3|LINE|L1 221278 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 352.666-8 chr3 69360966 69361225 + 1.83333 NA intron (NM_015123, intron 1 of 22) L1MC5|LINE|L1 24993 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 275.5-29 chr8 32578179 32578570 + 1.83333 NA intron (NM_013960, intron 1 of 12) Tigger9a|DNA|TcMar-Tigger -17452 NM_001159995 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 215.5-32 chr9 80952475 80952729 + 1.83333 NA Intergenic Intergenic 736933 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 721.168 chr10 125558125 125558877 + 1.83333 NA Intergenic AluJb|SINE|Alu -15870 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 171.666 chr5 52312905 52313044 + 1.83333 NA Intergenic Intergenic 304943 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 497-3 chr2 215920079 215920556 + 1.83333 NA Intergenic Intergenic -76781 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 429.833-3 chr12 87678278 87678576 + 1.83333 NA Intergenic MLT1J1|LTR|ERVL-MaLR -90385 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 364-2 chr11 21471393 21471767 + 1.83333 NA intron (NM_201551, intron 15 of 18) MIRb|SINE|MIR -721505 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 275.833-14 chr2 117959228 117959442 + 1.83333 NA intron (NM_019044, intron 11 of 23) intron (NM_019044, intron 11 of 23) 54735 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 223.333-14 chr14 56114451 56114645 + 1.83333 NA Intergenic L1ME4c|LINE|L1 -3863 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 350.666-3 chr3 172596082 172596322 + 1.83333 NA promoter-TSS (NR_146714) promoter-TSS (NR_146714) -595 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 454-9 chr21 18307161 18307623 + 1.83333 NA intron (NM_002772, intron 18 of 24) intron (NM_002772, intron 18 of 24) 61517 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 197.666-2 chr15 34102564 34102679 + 1.83333 NA promoter-TSS (NM_020154) promoter-TSS (NM_020154) 538 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 313.666-4 chr2 75610748 75610941 + 1.83333 NA Intergenic AluJr|SINE|Alu -35939 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 483.333 chr1 43666942 43667503 + 1.83333 NA intron (NM_014663, intron 8 of 21) intron (NM_014663, intron 8 of 21) 17073 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 236.666-10 chr8 138162649 138162887 + 1.83333 NA intron (NM_015912, intron 12 of 19) intron (NM_015912, intron 12 of 19) -79223 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 396.666-7 chr9 100868225 100868539 + 1.83333 NA Intergenic L1ME2z|LINE|L1 -160345 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 302.333-16 chr8 40263910 40264078 + 1.83333 NA Intergenic Arthur1|DNA|hAT-Tip100 79369 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 245.666-4 chr14 49460176 49460402 + 1.83333 NA Intergenic MIR3|SINE|MIR 126091 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 406.834-2 chr4 68216965 68217379 + 1.83333 NA intron (NR_104048, intron 1 of 9) intron (NR_104048, intron 1 of 9) 908 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 172.666 chr1 84792140 84792286 + 1.83333 NA Intergenic L1ME3E|LINE|L1 100993 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 281.167-3 chr10 99430546 99430922 + 1.83333 NA promoter-TSS (NM_002079) promoter-TSS (NM_002079) -110 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 423.666-3 chr7 54759282 54759605 + 1.83333 NA promoter-TSS (NM_001012456) promoter-TSS (NM_001012456) 130 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 186.333-5 chr10 88904690 88904812 + 1.83333 NA intron (NM_020799, intron 2 of 10) Charlie23a|DNA|hAT-Charlie 24506 NM_020799 57559 Hs.16229 NM_020799 ENSG00000138134 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein like 1 protein-coding 256.167-15 chr3 182481137 182481454 + 1.83333 NA intron (NR_040105, intron 1 of 3) intron (NR_040105, intron 1 of 3) 5067 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 365.666-6 chr7 27136059 27136567 + 1.83333 NA Intergenic Intergenic -4051 NR_038832 100133311 Hs.610216 NR_038831 ENSG00000254369 HOXA-AS3 HOXA6as HOXA cluster antisense RNA 3 ncRNA 394-2 chr1 172343579 172343893 + 1.83333 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -76949 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 695.666 chr4 37825977 37826707 + 1.83333 NA promoter-TSS (NM_018290) promoter-TSS (NM_018290) -344 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 228.166-4 chr5 53749459 53749599 + 1.83333 NA Intergenic L1M4a2|LINE|L1 70153 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 335.833-6 chr15 86155488 86155764 + 1.83333 NA intron (NM_152336, intron 4 of 24) intron (NM_152336, intron 4 of 24) -38909 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 424.5-13 chr6 158999757 159000290 + 1.83333 NA non-coding (NR_144434, exon 1 of 9) non-coding (NR_144434, exon 1 of 9) 164 NM_001346418 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 374.166 chr2 85711331 85711718 + 1.83333 NA Intergenic Intergenic 17166 NM_006433 10578 Hs.105806 NM_006433 ENSG00000115523 GNLY D2S69E|LAG-2|LAG2|NKG5|TLA519 granulysin protein-coding 273.166 chr12 54326760 54326963 + 1.83333 NA intron (NM_001271734, intron 1 of 7) intron (NM_001271734, intron 1 of 7) 1730 NR_073424 22818 Hs.505652 NM_016057 ENSG00000111481 COPZ1 CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP coatomer protein complex subunit zeta 1 protein-coding 241.833-10 chr3 162252555 162252707 + 1.83333 NA Intergenic Intergenic 755823 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 239-22 chr22 45163730 45164150 + 1.83333 NA promoter-TSS (NM_007172) promoter-TSS (NM_007172) 15 NM_007172 10762 Hs.475103 NM_007172 ENSG00000093000 NUP50 NPAP60|NPAP60L nucleoporin 50 protein-coding 242.499 chr6 37795005 37795154 + 1.83333 NA Intergenic L2b|LINE|L2 -24648 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 243.666 chr6 35204862 35205018 + 1.83333 NA Intergenic L2c|LINE|L2 -9016 NM_001303136 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 436.833-2 chr10 94860589 94860915 + 1.83333 NA Intergenic L1M1|LINE|L1 -77906 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 196.167-34 chr6 126168935 126169137 + 1.83333 NA Intergenic MER102b|DNA|hAT-Charlie -170753 NM_001012507 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 440.5-6 chr6 164873497 164873948 + 1.83333 NA Intergenic Intergenic -51659 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 383.333-8 chr2 167964846 167965118 + 1.83333 NA intron (NM_013233, intron 16 of 17) intron (NM_013233, intron 16 of 17) -23838 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 292.167-13 chr3 184021522 184021936 + 1.83333 NA Intergenic Intergenic -3845 NM_001023587 10057 Hs.368563 NM_005688 ENSG00000114770 ABCC5 ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 ATP binding cassette subfamily C member 5 protein-coding 496.166-2 chr12 120325170 120325699 + 1.83333 NA intron (NM_000928, intron 2 of 3) AluSz|SINE|Alu 2345 NM_000928 5319 Hs.992 NM_000928 ENSG00000170890 PLA2G1B PLA2|PLA2A|PPLA2 phospholipase A2 group IB protein-coding 247.167-24 chrX 26593215 26593444 + 1.83333 NA Intergenic Intergenic 34992 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 248-41 chr8 109171211 109171451 + 1.83333 NA Intergenic L1MA10|LINE|L1 84703 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 467.333-2 chr4 105184162 105184659 + 1.83333 NA intron (NR_126420, intron 2 of 5) intron (NR_126420, intron 2 of 5) 37725 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 223.833-24 chr9 85280747 85280909 + 1.83333 NA Intergenic Intergenic 461201 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 376.667-11 chr8 136956442 136956782 + 1.83333 NA Intergenic LTR49|LTR|ERV1 425814 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 704.667 chr1 19241241 19241872 + 1.83333 NA TTS (NR_135114) TTS (NR_135114) 9968 NM_001271427 23065 Hs.439200 NM_015047 ENSG00000127463 EMC1 CAVIPMR|KIAA0090 ER membrane protein complex subunit 1 protein-coding 176.167-15 chr14 86730878 86731036 + 1.83333 NA Intergenic L1MC4|LINE|L1 -174821 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 194.667-2 chr1 48413756 48413919 + 1.83333 NA intron (NM_019073, intron 3 of 12) Tigger2b_Pri|DNA|TcMar-Tigger 58367 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 364-6 chr17 66891369 66891742 + 1.83333 NA 3' UTR (NM_145811, exon 6 of 6) 3' UTR (NM_145811, exon 6 of 6) 56438 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 236.333-17 chr2 237171651 237171833 + 1.83333 NA Intergenic Charlie25|DNA|hAT-Charlie 85853 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 457.499 chr9 112844423 112844787 + 1.83333 NA intron (NM_001012994, intron 6 of 8) L2a|LINE|L2 46271 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 328.333-10 chr6 50151419 50151780 + 1.83333 NA Intergenic Intergenic -101670 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 425.834-3 chr5 34906699 34907048 + 1.83333 NA non-coding (NR_026591, exon 5 of 5) non-coding (NR_026591, exon 5 of 5) 8631 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 415.166-3 chr21 31785800 31786105 + 1.83333 NA Intergenic Intergenic -53834 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 342-2 chr10 80968531 80968782 + 1.83333 NA Intergenic L1ME3A|LINE|L1 318859 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 204.333-39 chr5 18416718 18416865 + 1.83333 NA Intergenic MLT1L|LTR|ERVL-MaLR 609517 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 448.333-5 chr5 54329879 54330317 + 1.83333 NA intron (NR_126379, intron 1 of 4) ERVL-E-int|LTR|ERVL 9154 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 432.501 chr6 126806237 126806752 + 1.83333 NA Intergenic MIRb|SINE|MIR -312177 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 545.333-3 chr4 54322410 54323075 + 1.83333 NA Intergenic Intergenic -10150 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 608.833 chr3 38297770 38298414 + 1.83333 NA intron (NM_001320033, intron 1 of 10) L1MC4|LINE|L1 -7844 NM_004803 9389 Hs.165559 NM_004803 ENSG00000144671 SLC22A14 OCTL2|OCTL4|ORCTL4 solute carrier family 22 member 14 protein-coding 303.833-7 chr2 72606564 72606978 + 1.83333 NA intron (NR_135774, intron 6 of 19) AluSz|SINE|Alu 219262 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 368.666-4 chr2 188988838 188989186 + 1.83333 NA intron (NM_000090, intron 7 of 50) (ATATAC)n|Simple_repeat|Simple_repeat -6618 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 384.666-2 chr11 8887221 8887525 + 1.83333 NA intron (NM_005418, intron 1 of 22) MIRb|SINE|MIR 23578 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 450.334-2 chr3 67647529 67647944 + 1.83333 NA intron (NM_001177599, intron 1 of 10) intron (NM_001177599, intron 1 of 10) 6878 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 239.5-4 chr10 123406644 123406968 + 1.83333 NA Intergenic L1MB7|LINE|L1 252404 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 346.833-4 chr18 2638462 2638843 + 1.83333 NA Intergenic L1MC1|LINE|L1 16743 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 289-2 chr10 77391846 77392084 + 1.83333 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 41093 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 324.166-6 chr9 100595864 100596048 + 1.83333 NA Intergenic Intergenic 17877 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 177.333-20 chr22 17077355 17077520 + 1.83333 NA Intergenic MIRb|SINE|MIR -7522 NM_014339 23765 Hs.48353 NM_014339 ENSG00000177663 IL17RA CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R interleukin 17 receptor A protein-coding 361.333-2 chr10 102596627 102597058 + 1.83333 NA intron (NM_001178133, intron 6 of 10) intron (NM_001178133, intron 6 of 10) -47653 NR_144321 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 429.167-8 chr4 83255844 83256393 + 1.83333 NA Intergenic AluSx1|SINE|Alu 28677 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 301.833-3 chr2 65380524 65380870 + 1.83333 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -13919 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 377-3 chr11 33971264 33971634 + 1.83333 NA Intergenic Intergenic -79373 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 407.166-5 chrX 45801479 45801715 + 1.83333 NA Intergenic FLAM_C|SINE|Alu 49893 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 196.5-18 chr2 35973289 35973626 + 1.83333 NA Intergenic Intergenic 382113 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 176.333-11 chr16 55701746 55701965 + 1.83333 NA intron (NM_001172504, intron 12 of 13) intron (NM_001172504, intron 12 of 13) -23070 NR_033740 390732 Hs.554599 NR_033740 CES1P2 - carboxylesterase 1 pseudogene 2 pseudo 410.334-3 chr5 7817053 7817518 + 1.83333 NA intron (NM_020546, intron 23 of 24) intron (NM_020546, intron 23 of 24) 33848 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 343.499 chr14 41923578 41923944 + 1.83333 NA Intergenic Intergenic 316905 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 301-21 chr5 12193067 12193471 + 1.83333 NA Intergenic LTR16A|LTR|ERVL -288823 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 437.666-5 chr8 134822014 134822599 + 1.83333 NA Intergenic Intergenic -15763 NR_126028 552853 Hs.575612 NR_126028 ENSG00000253433 NCRNA00250 C8orf24 non-protein coding RNA 250 ncRNA 360.833 chr11 127493399 127493715 + 1.83333 NA Intergenic Intergenic 222487 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 194.167-37 chr9 20889937 20890118 + 1.83333 NA intron (NM_017794, intron 23 of 45) L1M5|LINE|L1 103100 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 407-6 chr8 82133937 82134377 + 1.83333 NA Intergenic L1PB1|LINE|L1 -291871 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 490.334-6 chr6 20126702 20127349 + 1.83333 NA intron (NR_073465, intron 3 of 9) intron (NR_073465, intron 3 of 9) 85444 NR_073465 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 1149.17 chr16 84062685 84064302 + 1.83333 NA intron (NM_003791, intron 18 of 22) intron (NM_003791, intron 18 of 22) -21336 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 334.833-5 chr2 206348566 206348832 + 1.83333 NA Intergenic THE1D-int|LTR|ERVL-MaLR 73689 NM_001285549 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 Slx9 zinc finger DBF-type containing 2 protein-coding 434.167 chr1 151177949 151178324 + 1.83333 NA exon (NM_001271088, exon 5 of 6) exon (NM_001271088, exon 5 of 6) -2155 NM_013353 29765 Hs.709681 NM_013353 ENSG00000163157 TMOD4 SK-TMOD tropomodulin 4 protein-coding 280.5-19 chr7 54073208 54073640 + 1.83333 NA Intergenic L1M5|LINE|L1 -257273 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 600.666 chr7 116097557 116098142 + 1.83333 NA Intergenic L1MDa|LINE|L1 -67086 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 375.333-7 chr4 72706023 72706277 + 1.83333 NA Intergenic MER63C|DNA|hAT-Blackjack -136929 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 488.334-2 chr2 46913675 46914254 + 1.83333 NA intron (NM_001171506, intron 1 of 4) intron (NM_001171506, intron 1 of 4) 1842 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 325.333-7 chr2 1277586 1277933 + 1.83333 NA intron (NM_018968, intron 14 of 16) intron (NM_018968, intron 14 of 16) -135702 NM_175719 7173 Hs.467554 NM_000547 ENSG00000115705 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 346.167-10 chr4 58109077 58109485 + 1.83333 NA Intergenic Intergenic 427047 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 306.333-9 chr6 47479966 47480313 + 1.83333 NA intron (NM_012120, intron 1 of 17) intron (NM_012120, intron 1 of 17) 2350 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 258.166-2 chr6 129500849 129501332 + 1.83333 NA intron (NM_000426, intron 58 of 64) intron (NM_000426, intron 58 of 64) 209087 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 286-23 chr7 54474974 54475203 + 1.83333 NA Intergenic Intergenic -67237 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 393.166 chr1 171226728 171226948 + 1.83333 NA Intergenic Intergenic -21633 NM_001282694 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 340.333-11 chr20 41752810 41753061 + 1.83333 NA Intergenic L1ME4b|LINE|L1 -134558 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 359.667-4 chr4 112823806 112824156 + 1.83333 NA intron (NM_001354275, intron 1 of 43) intron (NM_001354275, intron 1 of 43) 5984 NM_001354276 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 501 chr1 24390016 24390592 + 1.83333 NA intron (NM_178122, intron 2 of 7) intron (NM_178122, intron 2 of 7) -23183 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 186.167-25 chr8 14693017 14693211 + 1.83333 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 160396 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 312.167-9 chr9 90356592 90356810 + 1.83333 NA intron (NR_109795, intron 2 of 2) L1ME1|LINE|L1 76788 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 615.5-3 chr8 129874019 129874507 + 1.83333 NA intron (NM_001353287, intron 6 of 14) intron (NM_001353287, intron 6 of 14) 65548 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 270-13 chr14 67260537 67260779 + 1.83333 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 19223 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 434.667-2 chr5 106735544 106735920 + 1.83333 NA Intergenic L1PREC2|LINE|L1 275282 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 323.501 chr1 234897006 234897356 + 1.83333 NA Intergenic Intergenic 66818 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 411.166 chr11 112083241 112083554 + 1.83333 NA non-coding (NR_103469, exon 6 of 6) non-coding (NR_103469, exon 6 of 6) 3359 NM_012459 26521 Hs.279915 NM_012459 ENSG00000150779 TIMM8B DDP2|TIM8B translocase of inner mitochondrial membrane 8 homolog B protein-coding 486.167-2 chr14 22900129 22900786 + 1.83333 NA 3' UTR (NM_001352766, exon 16 of 16) 3' UTR (NM_001352766, exon 16 of 16) 17235 NM_173527 161253 Hs.444911 NM_173527 ENSG00000139890 REM2 - RRAD and GEM like GTPase 2 protein-coding 461.333 chr17 47842959 47843423 + 1.83333 NA Intergenic Intergenic -1918 NM_001145023 90507 Hs.239718 NM_138355 ENSG00000141295 SCRN2 Ses2 secernin 2 protein-coding 548.499 chr5 26482505 26483382 + 1.83333 NA Intergenic LTR35A|LTR|ERV1 555643 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 309.834-9 chr3 123066811 123067097 + 1.83333 NA promoter-TSS (NR_028444) promoter-TSS (NR_028444) -71 NR_028444 10954 Hs.477352 NM_006810 ENSG00000065485 PDIA5 PDIR protein disulfide isomerase family A member 5 protein-coding 257.667-21 chr6 118291935 118292402 + 1.83333 NA intron (NM_001029858, intron 7 of 7) MER5B|DNA|hAT-Charlie 206265 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 302.5-10 chr17 70902933 70903171 + 1.83333 NA Intergenic Intergenic 299127 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 484.166-2 chr16 24252921 24253401 + 1.83333 NA TTS (NR_146569) TTS (NR_146569) -2392 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 204.667-44 chrX 42546592 42546791 + 1.83333 NA Intergenic Intergenic 231472 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 302-13 chr20 46073760 46074157 + 1.83333 NA intron (NM_001348148, intron 1 of 6) intron (NM_001348148, intron 1 of 6) 16004 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 347.5-3 chr14 102026828 102027127 + 1.83333 NA intron (NM_001376, intron 44 of 77) intron (NM_001376, intron 44 of 77) 60067 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 223.5-28 chr8 118206467 118206621 + 1.83333 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -94725 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 579.334 chr3 86969496 86970239 + 1.83333 NA intron (NM_001320494, intron 2 of 3) MIRb|SINE|MIR 21282 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 487.333 chr10 72048378 72048970 + 1.83333 NA Intergenic Intergenic 39877 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 238.333-20 chr19 48470793 48471030 + 1.83333 NA intron (NM_017457, intron 3 of 11) intron (NM_017457, intron 3 of 11) 1542 NM_004228 9266 Hs.144011 NM_004228 ENSG00000105443 CYTH2 ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like|cytohesin-2 cytohesin 2 protein-coding 413.166-2 chr5 133051531 133051889 + 1.83333 NA promoter-TSS (NM_002154) promoter-TSS (NM_002154) -303 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 643.999 chr2 41782354 41782984 + 1.83333 NA Intergenic PABL_B-int|LTR|ERV1 -94886 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 377.334 chr1 233696980 233697337 + 1.83333 NA Intergenic L1MB3|LINE|L1 73006 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 405.333-14 chr8 126240233 126240596 + 1.83333 NA Intergenic MER103C|DNA|hAT-Charlie -85081 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 490.167-3 chr8 132772822 132773302 + 1.83333 NA Intergenic MER20B|DNA|hAT-Charlie -2296 NM_001362971 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 262.833-2 chr1 160258544 160258717 + 1.83333 NA intron (NR_028104, intron 1 of 12) AluJo|SINE|Alu -3119 NR_147618 100287049 Hs.657648 NR_147618 ENSG00000228606 LOC100287049 - uncharacterized LOC100287049 ncRNA 546.001 chr9 4315572 4316079 + 1.83333 NA Intergenic Intergenic -15757 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 271.333-7 chr12 65290140 65290441 + 1.83333 NA intron (NM_001193461, intron 1 of 6) MIR|SINE|MIR 11303 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 428.5-3 chr19 49877568 49878081 + 1.83333 NA promoter-TSS (NM_032375) promoter-TSS (NM_032375) 122 NM_024682 79735 Hs.631587 NM_024682 ENSG00000104946 TBC1D17 - TBC1 domain family member 17 protein-coding 572.5 chr1 11805772 11806392 + 1.83333 NA promoter-TSS (NR_046428) promoter-TSS (NR_046428) -14 NM_001256959 1185 Hs.193043 NM_001286 ENSG00000011021 CLCN6 CLC-6 chloride voltage-gated channel 6 protein-coding 369.666-2 chr6 112029182 112029423 + 1.83333 NA Intergenic Intergenic -24773 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 178.667-19 chr17 69489305 69489482 + 1.83333 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) -3861 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 365.666-5 chr2 169142014 169142270 + 1.83333 NA intron (NM_004525, intron 71 of 78) intron (NM_004525, intron 71 of 78) 61035 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 317.166-3 chr16 56398903 56399199 + 1.83333 NA intron (NM_001144, intron 8 of 13) L1MB3|LINE|L1 25938 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 339.833-7 chr21 28362992 28363249 + 1.83333 NA Intergenic L1MB1|LINE|L1 -134453 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 264.167-16 chr21 43580648 43580947 + 1.83333 NA intron (NM_007031, intron 8 of 8) intron (NM_007031, intron 8 of 8) 15615 NM_017445 54145 NM_017445 ENSG00000234289 H2BFS H2B/s H2B histone family member S protein-coding 251.833-10 chr4 34473446 34473680 + 1.83333 NA Intergenic Intergenic -203816 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 247.833-9 chr18 62773037 62773231 + 1.83333 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 57593 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 583.5-3 chr7 27921081 27921895 + 1.83333 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 181393 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 295.5-8 chr2 164729009 164729244 + 1.83333 NA intron (NM_001365670, intron 4 of 13) intron (NM_001365670, intron 4 of 13) -41349 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 331.501-2 chr8 118108915 118109355 + 1.83333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 2684 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 313.166 chr14 33795590 33795792 + 1.83333 NA intron (NM_001165893, intron 9 of 10) intron (NM_001165893, intron 9 of 10) 86754 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 337 chr1 161177260 161177491 + 1.83333 NA intron (NM_001199873, intron 1 of 7) CpG 132 NM_003779 8703 Hs.321231 NM_003779 ENSG00000158850 B4GALT3 beta4Gal-T3 beta-1,4-galactosyltransferase 3 protein-coding 308.833-14 chr6 123433584 123433872 + 1.83333 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -5876 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 697.166-2 chr6 99466938 99467985 + 1.83333 NA intron (NR_144347, intron 11 of 14) intron (NR_144347, intron 11 of 14) -42116 NM_001322412 25957 Hs.520287 NM_015491 ENSG00000132424 PNISR C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2 PNN interacting serine and arginine rich protein protein-coding 630.833-6 chr6 53728372 53729015 + 1.83333 NA Intergenic Intergenic -62937 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 186 chr1 119901444 119901707 + 1.83333 NA Intergenic L1ME3B|LINE|L1 -5060 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 423.666-2 chr19 39397261 39397798 + 1.83333 NA non-coding (NR_133915, exon 3 of 3) non-coding (NR_133915, exon 3 of 3) 6151 NM_001317770 55588 Hs.611541 NM_017592 ENSG00000063322 MED29 IXL|MED2 mediator complex subunit 29 protein-coding 368.333-7 chr6 91813424 91813624 + 1.83333 NA Intergenic Intergenic -123096 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 395.334-2 chr11 107199289 107199692 + 1.83333 NA Intergenic MER20B|DNA|hAT-Charlie -181014 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 261.833-14 chr4 37026534 37026818 + 1.83333 NA Intergenic MSTA|LTR|ERVL-MaLR 24897 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 323.666-12 chr7 23184930 23185183 + 1.83333 NA intron (NM_001370446, intron 1 of 7) intron (NM_001370446, intron 1 of 7) 3008 NM_001370443 11097 Hs.408241 NM_007342 ENSG00000136243 NUP42 CG1|NLP-1|NLP_1|NUPL2|hCG1 nucleoporin 42 protein-coding 270.666-13 chr8 140171775 140171978 + 1.83333 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -71341 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 271.501 chr1 162392095 162392337 + 1.83333 NA Intergenic (AAGG)n|Simple_repeat|Simple_repeat 10488 NM_001085375 400793 Hs.447011 NM_001085375 ENSG00000239887 C1orf226 - chromosome 1 open reading frame 226 protein-coding 192.666-2 chr14 51307701 51307845 + 1.83333 NA intron (NR_145423, intron 1 of 1) intron (NR_145423, intron 1 of 1) 20612 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 471.333-4 chr5 141387386 141387698 + 1.83333 NA promoter-TSS (NM_032098) promoter-TSS (NM_032098) -343 NM_032098 8641 Hs.368160 NM_003736 ENSG00000253953 PCDHGB4 CDH20|FIB2|PCDH-GAMMA-B4 protocadherin gamma subfamily B, 4 protein-coding 356.333-8 chr22 25072232 25072557 + 1.83333 NA intron (NM_001145206, intron 4 of 10) MIR3|SINE|MIR 40298 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 372.666-10 chr7 47846420 47846651 + 1.83333 NA intron (NM_138295, intron 32 of 56) intron (NM_138295, intron 32 of 56) 51244 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 315.5-4 chr12 127648390 127648682 + 1.83333 NA TTS (NR_134995) TTS (NR_134995) 7052 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 166.666-3 chr18 7021994 7022196 + 1.83333 NA intron (NM_005559, intron 19 of 62) intron (NM_005559, intron 19 of 62) 67418 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 297-11 chr17 67200750 67201074 + 1.83333 NA intron (NM_001330447, intron 7 of 32) intron (NM_001330447, intron 7 of 32) -43864 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 285.666-3 chr1 186355392 186355578 + 1.83333 NA exon (NM_003292, exon 17 of 51) exon (NM_003292, exon 17 of 51) 19768 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 195.833-26 chrX 123084077 123084225 + 1.83333 NA Intergenic Intergenic -100092 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 459.001 chr12 106406272 106406711 + 1.83333 NA intron (NM_001160708, intron 11 of 27) L1MB4|LINE|L1 48409 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 498.833-3 chr19 40974522 40974980 + 1.83333 NA Intergenic Intergenic -16531 NM_000767 1555 Hs.1360 NM_000767 ENSG00000197408 CYP2B6 CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450 cytochrome P450 family 2 subfamily B member 6 protein-coding 231.666-6 chr22 21861505 21861827 + 1.83333 NA intron (NM_002745, intron 1 of 8) L2c|LINE|L2 6014 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 220.833-15 chr2 78380497 78380705 + 1.83333 NA Intergenic L1ME4b|LINE|L1 -89870 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 301.666-8 chr16 75470146 75470385 + 1.83333 NA Intergenic L2a|LINE|L2 -5528 NM_001304998 124491 Hs.487510 NM_145254 ENSG00000166822 TMEM170A TMEM170 transmembrane protein 170A protein-coding 410-10 chr3 109022840 109023111 + 1.83333 NA intron (NM_014429, intron 17 of 27) L2c|LINE|L2 -69096 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 380.999-2 chr6 19176738 19177042 + 1.83333 NA intron (NR_110860, intron 2 of 10) L1ME4a|LINE|L1 3590 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 569-2 chr2 65366449 65367402 + 1.83333 NA promoter-TSS (NM_001128210) promoter-TSS (NM_001128210) -147 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 203.666-4 chr2 109617428 109617596 + 1.83333 NA 3' UTR (NM_023016, exon 1 of 1) 3' UTR (NM_023016, exon 1 of 1) 3148 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 485-6 chr4 162723009 162723596 + 1.83333 NA Intergenic L3|LINE|CR1 370326 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 704.333 chr5 169581460 169582423 + 1.83333 NA Intergenic L2c|LINE|L2 -1832 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 336.333-10 chr4 162201913 162202160 + 1.83333 NA Intergenic Intergenic -38002 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 213.333-20 chr20 58252182 58252347 + 1.83333 NA intron (NR_003505, intron 4 of 16) MIR|SINE|MIR -23611 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 195-5 chr11 41447774 41447922 + 1.83333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 11788 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 762.666 chr1 91401761 91402597 + 1.83333 NA intron (NM_001017975, intron 1 of 38) MamRep564|Unknown|Unknown 2658 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 456.833 chr4 127920322 127920781 + 1.83333 NA 3' UTR (NM_001363521, exon 9 of 9) 3' UTR (NM_001363521, exon 9 of 9) 39307 NM_001190801 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 560.333-2 chr14 81625139 81625759 + 1.83333 NA Intergenic Intergenic -2388 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 182.833-17 chr18 45098285 45098439 + 1.83333 NA Intergenic Intergenic -69601 NM_001371319 271.667-9 chr13 110395181 110395470 + 1.83333 NA intron (NM_001846, intron 4 of 47) MamRep137|DNA|TcMar-Tigger 54367 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 216-44 chr6 154199026 154199168 + 1.83333 NA intron (NM_015553, intron 10 of 11) intron (NM_015553, intron 10 of 11) 109335 NM_001285528 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 407.999 chr1 16192412 16192779 + 1.83333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 20057 NM_153213 128272 Hs.591532 NM_153213 ENSG00000142632 ARHGEF19 WGEF Rho guanine nucleotide exchange factor 19 protein-coding 349.666-4 chr9 115262353 115262646 + 1.83333 NA intron (NR_163556, intron 2 of 7) intron (NR_163556, intron 2 of 7) 120681 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 272.833-8 chr16 67185360 67185876 + 1.83333 NA intron (NM_178516, intron 9 of 13) intron (NM_178516, intron 9 of 13) -1655 NM_001369681 653319 Hs.651201 NM_001040715 ENSG00000196123 KIAA0895L - KIAA0895 like protein-coding 250.667-36 chr6 70259046 70259276 + 1.83333 NA intron (NM_001851, intron 20 of 37) intron (NM_001851, intron 20 of 37) 24036 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 300-5 chr11 130894656 130894860 + 1.83333 NA intron (NM_014758, intron 8 of 10) intron (NM_014758, intron 8 of 10) 21729 NM_001347926 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 449-7 chr8 85502282 85502683 + 1.83333 NA Intergenic Intergenic -37567 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 199.333-11 chr11 109309278 109309393 + 1.83333 NA Intergenic MLT1N2|LTR|ERVL-MaLR -112855 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 267.834-3 chr17 55763312 55763555 + 1.83333 NA intron (NM_001102402, intron 1 of 5) L1M5|LINE|L1 12328 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 225.167-28 chr5 145697716 145698063 + 1.83333 NA Intergenic Intergenic 137453 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 381.666 chr5 35685522 35685747 + 1.83333 NA intron (NM_024867, intron 10 of 36) intron (NM_024867, intron 10 of 36) 67771 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 258.5-9 chr12 60950177 60950426 + 1.83333 NA Intergenic Intergenic 1242538 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 544.333-3 chr6 159789407 159789947 + 1.83333 NA promoter-TSS (NM_014161) promoter-TSS (NM_014161) 26 NM_001008897 6950 Hs.363137 NM_030752 ENSG00000120438 TCP1 CCT-alpha|CCT1|CCTa|D6S230E|TCP-1-alpha t-complex 1 protein-coding 320.333-4 chr3 168927201 168927396 + 1.83333 NA Intergenic Intergenic 25353 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 359.666-3 chr15 61204127 61204500 + 1.83333 NA intron (NM_134261, intron 1 of 10) L2b|LINE|L2 24989 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 376.834-4 chr18 63979339 63979955 + 1.83333 NA intron (NM_198833, intron 2 of 6) MER20|DNA|hAT-Charlie 9566 NM_001348368 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 C18orf53|CAP2|PI-8|PI8|PSS5 serpin family B member 8 protein-coding 407.666 chr1 12851809 12852094 + 1.83333 NA Intergenic AluSg|SINE|Alu -3195 NM_001013631 343069 Hs.502617 NM_001013631 ENSG00000179172 HNRNPCL1 HNRPCL1 heterogeneous nuclear ribonucleoprotein C like 1 protein-coding 257.333-25 chr8 11943404 11943833 + 1.83333 NA Intergenic AluSz6|SINE|Alu 30981 NM_001033018 613210 Hs.558285 NM_001033018 ENSG00000205884 DEFB136 DEFB137 defensin beta 136 protein-coding 446-8 chr6 25558644 25559044 + 1.83333 NA intron (NM_001173977, intron 29 of 36) intron (NM_001173977, intron 29 of 36) -93371 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 507.334 chr7 43582518 43582913 + 1.83333 NA promoter-TSS (NM_004760) promoter-TSS (NM_004760) -393 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 538.167-3 chr3 151282867 151283548 + 1.83333 NA intron (NM_053002, intron 14 of 42) intron (NM_053002, intron 14 of 42) -4665 NM_014879 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 402-5 chr15 70938716 70939094 + 1.83333 NA intron (NM_017691, intron 8 of 15) MER112|DNA|hAT-Charlie 46462 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 620.5-2 chr3 195260245 195260720 + 1.83333 NA intron (NM_152531, intron 1 of 3) CpG 10677 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 365.666 chr12 37818464 37818796 + 1.83333 NA Intergenic ALR/Alpha|Satellite|centr -498144 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 210.333-26 chr4 100096154 100096432 + 1.83333 NA Intergenic Intergenic -93740 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 238.666-2 chr1 207113691 207113915 + 1.83333 NA intron (NM_000715, intron 2 of 11) intron (NM_000715, intron 2 of 11) 9570 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 245.5-9 chr12 13682897 13683168 + 1.83333 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 297324 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 393.999-3 chr5 112963891 112964181 + 1.83333 NA Intergenic Intergenic -12762 NM_001242377 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 304-13 chr17 60626241 60626514 + 1.83333 NA intron (NM_003620, intron 2 of 5) L1ME4b|LINE|L1 26194 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 246.833-4 chr14 30023880 30024188 + 1.83333 NA Intergenic MIR|SINE|MIR -96187 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 265.166-3 chr5 76959016 76959260 + 1.83333 NA intron (NM_001882, intron 5 of 6) intron (NM_001882, intron 5 of 6) 6093 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 325.5-4 chr11 119339027 119339320 + 1.83333 NA 3' UTR (NM_001278431, exon 3 of 3) 3' UTR (NM_001278431, exon 3 of 3) 1710 NM_001278431 114902 Hs.632102 NM_015645 ENSG00000223953 C1QTNF5 CTRP5|MFRP C1q and TNF related 5 protein-coding 357.333-5 chr12 62506814 62507115 + 1.83333 NA intron (NM_001278469, intron 7 of 35) intron (NM_001278469, intron 7 of 35) 40138 NM_001278469 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 363.5-5 chr2 169127647 169128045 + 1.83333 NA 3' UTR (NM_004525, exon 79 of 79) 3' UTR (NM_004525, exon 79 of 79) 46739 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 623-3 chr2 214809633 214810254 + 1.83333 NA promoter-TSS (NM_001282548) promoter-TSS (NM_001282548) -260 NM_001282543 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 382.166 chr17 48567353 48567711 + 1.83333 NA intron (NM_001330322, intron 2 of 4) intron (NM_001330322, intron 2 of 4) 6916 NM_002146 3213 Hs.654560 NM_002146 ENSG00000120093 HOXB3 HOX2|HOX2G|Hox-2.7 homeobox B3 protein-coding 317.5-8 chr2 49098718 49098896 + 1.83333 NA intron (NM_000145, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat 39204 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 325.666-3 chr19 19554541 19554792 + 1.83333 NA Intergenic Intergenic 16401 NM_153221 148113 Hs.279574 NM_153221 ENSG00000160161 CILP2 CLIP-2 cartilage intermediate layer protein 2 protein-coding 300.5-3 chr11 84698227 84698487 + 1.83333 NA intron (NM_001351274, intron 5 of 26) MIRb|SINE|MIR 22585 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 375-14 chr6 119856331 119856651 + 1.83333 NA Intergenic L1MC4|LINE|L1 -158688 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 227.833-19 chr8 63891124 63891278 + 1.83333 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 121771 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 226.166-6 chr7 109775321 109775479 + 1.83333 NA Intergenic L1PB1|LINE|L1 184813 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 371.333 chr1 58732483 58732732 + 1.83333 NA Intergenic L2c|LINE|L2 -32545 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 276.833 chr1 240094825 240095229 + 1.83333 NA intron (NM_020066, intron 1 of 17) intron (NM_020066, intron 1 of 17) 3144 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 376.333 chr10 93008589 93008916 + 1.83333 NA intron (NM_001319195, intron 19 of 21) L2c|LINE|L2 -52046 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 339.333-13 chr4 42133896 42134258 + 1.83333 NA intron (NM_207406, intron 3 of 5) intron (NM_207406, intron 3 of 5) 18578 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 253.5-31 chr7 35705732 35705986 + 1.83333 NA Intergenic Intergenic -10578 NR_108083 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 366.333-3 chr8 133454277 133454532 + 1.83333 NA TTS (NM_173344) TTS (NM_173344) 117483 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 330.833-11 chr2 70243526 70243818 + 1.83333 NA intron (NM_001351511, intron 1 of 12) intron (NM_001351511, intron 1 of 12) 4956 NR_147231 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 592.667 chr17 39152695 39153298 + 1.83333 NA Intergenic Intergenic -1359 NM_020405 57125 Hs.125036 NM_020405 ENSG00000161381 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 360.166-4 chr17 65842514 65842865 + 1.83333 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) -16146 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 206.333-16 chr17 15392428 15392626 + 1.83333 NA Intergenic Intergenic -50930 NM_031898 64518 Hs.414648 NM_031898 ENSG00000125409 TEKT3 - tektin 3 protein-coding 611.999 chr20 956367 957063 + 1.83333 NA Intergenic Intergenic -40381 NM_015985 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 333-11 chr5 163329377 163329634 + 1.83333 NA Intergenic Intergenic -108066 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 509.666 chr16 88685286 88685715 + 1.83333 NA intron (NM_178310, intron 1 of 2) intron (NM_178310, intron 1 of 2) 1007 NM_178310 333929 Hs.673548 NM_178310 ENSG00000185669 SNAI3 SMUC|SNAIL3|ZNF293|Zfp293 snail family transcriptional repressor 3 protein-coding 211.5-42 chr7 13019195 13019401 + 1.83333 NA Intergenic Intergenic 331665 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 214.666 chr1 16206693 16206848 + 1.83333 NA intron (NM_153213, intron 6 of 15) CpG 5882 NM_153213 128272 Hs.591532 NM_153213 ENSG00000142632 ARHGEF19 WGEF Rho guanine nucleotide exchange factor 19 protein-coding 380.833-3 chr21 8994080 8994485 + 1.83333 NA Intergenic Intergenic 6665 NR_162105 113218501 NR_162105 MIR10396A - microRNA 10396a ncRNA 387.833-2 chr2 160661896 160662280 + 1.83333 NA Intergenic L1ME1|LINE|L1 -168281 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 375.333-12 chr7 42839228 42839547 + 1.83333 NA Intergenic L1ME4c|LINE|L1 72456 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 291.333-8 chr14 61730891 61731191 + 1.83333 NA intron (NM_181054, intron 6 of 13) intron (NM_181054, intron 6 of 13) 18048 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 294.167-12 chr6 131017172 131017433 + 1.83333 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) -3693 NM_001350309 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 535.499 chr4 35962296 35962730 + 1.83333 NA Intergenic L1MC3|LINE|L1 281426 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 748.333-2 chr19 50669395 50670169 + 1.83333 NA intron (NM_016148, intron 22 of 23) MER113B|DNA|hAT-Charlie 20337 NM_001195076 342918 Hs.531650 NM_001195076 ENSG00000235034 C19orf81 - chromosome 19 open reading frame 81 protein-coding 274.667-4 chr1 113534052 113534328 + 1.83333 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 143675 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 259.833-15 chr5 45993485 45993641 + 1.83333 NA Intergenic ALR/Alpha|Satellite|centr -297183 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 384-5 chr16 79667102 79667537 + 1.83333 NA Intergenic Intergenic -66582 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 524.167-2 chr20 59594547 59595066 + 1.83333 NA intron (NM_001199505, intron 1 of 12) L1MC1|LINE|L1 -9734 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 460.834-2 chr2 100449656 100450010 + 1.83333 NA Intergenic Intergenic -20649 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 369.167-9 chr7 21497679 21498068 + 1.83333 NA intron (NM_003112, intron 5 of 5) L2|LINE|L2 26815 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 282.5-14 chr5 120317080 120317472 + 1.83333 NA Intergenic L1ME3G|LINE|L1 -147002 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 367.5-2 chr15 65318628 65319034 + 1.83333 NA Intergenic Intergenic 14154 NR_002757 26832 NR_002757 ENSG00000200156 RNU5B-1 RNU5B|RNU5B-1P|U5B1 RNA, U5B small nuclear 1 snRNA 590.667 chr1 167214797 167215540 + 1.83333 NA Intergenic L4_A_Mam|LINE|RTE-X -5717 NM_001365849 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 549.666 chr12 71392507 71392983 + 1.83333 NA Intergenic Intergenic -47053 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 483.833-3 chr22 30262839 30263272 + 1.83333 NA 3' UTR (NM_020530, exon 3 of 3) 3' UTR (NM_020530, exon 3 of 3) 3185 NM_001319108 5008 Hs.248156 NM_020530 ENSG00000099985 OSM - oncostatin M protein-coding 237.667-34 chr6 56494668 56494883 + 1.83333 NA intron (NM_001144770, intron 74 of 94) intron (NM_001144770, intron 74 of 94) -100647 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 306.167-3 chr12 24030485 24030875 + 1.83333 NA intron (NM_152989, intron 4 of 17) L1MA8|LINE|L1 -79648 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 440.5-2 chr11 61949474 61949885 + 1.83333 NA promoter-TSS (NM_004183) promoter-TSS (NM_004183) -142 NM_001363592 7439 Hs.524910 NM_004183 ENSG00000167995 BEST1 ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2 bestrophin 1 protein-coding 548.834-3 chr7 4753797 4754289 + 1.83333 NA intron (NM_001037165, intron 2 of 8) intron (NM_001037165, intron 2 of 8) -21580 NM_001364858 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 subunit zeta 1 protein-coding 388.333-13 chr8 129607275 129607583 + 1.83333 NA intron (NR_130917, intron 1 of 3) L1PA4|LINE|L1 -32411 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 239.834-5 chr2 50852213 50852459 + 1.83333 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -156074 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 342.166-4 chr3 89030510 89031074 + 1.83333 NA Intergenic Intergenic -76829 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 264-15 chr14 59226024 59226303 + 1.83333 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -37278 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 268.334-11 chr8 116985343 116985541 + 1.83333 NA intron (NM_001172811, intron 2 of 9) L1ME4b|LINE|L1 34467 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 537.333-3 chr6 15441216 15441847 + 1.83333 NA intron (NM_004973, intron 3 of 17) intron (NM_004973, intron 3 of 17) 192676 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 476.5-7 chr8 81302568 81303056 + 1.83333 NA Intergenic Intergenic 22276 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 554.999 chrX 68959812 68960151 + 1.83333 NA Intergenic L1MD2|LINE|L1 130984 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 281.333-19 chr3 109394471 109394737 + 1.83333 NA Intergenic MIRb|SINE|MIR -15386 NR_109842 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 246.167-33 chr7 11839589 11840015 + 1.83333 NA Intergenic L1M1|LINE|L1 -7604 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 278.166-5 chr6 52243167 52243575 + 1.83333 NA intron (NM_052872, intron 1 of 2) intron (NM_052872, intron 1 of 2) 1129 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 368-10 chr7 43279412 43279811 + 1.83333 NA intron (NM_001287059, intron 2 of 27) L2a|LINE|L2 128716 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 375.667-5 chr13 96474680 96475015 + 1.83333 NA intron (NM_153456, intron 1 of 1) MIR|SINE|MIR 47618 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 607.332 chr5 174935849 174936657 + 1.83333 NA intron (NR_046113, intron 2 of 2) MIRb|SINE|MIR 59478 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 437.666-6 chrX 138775378 138775681 + 1.83333 NA intron (NM_001139498, intron 2 of 5) intron (NM_001139498, intron 2 of 5) -36176 NM_033642 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 537.334-2 chr12 115947119 115947897 + 1.83333 NA Intergenic L1MD3|LINE|L1 201146 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 341.5-16 chr8 82099376 82099814 + 1.83333 NA Intergenic LTR54|LTR|ERV1 -257309 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 362.5-4 chr12 79886589 79886994 + 1.83333 NA intron (NM_001244990, intron 2 of 24) intron (NM_001244990, intron 2 of 24) 27120 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 587.667-6 chr8 118502165 118502912 + 1.83333 NA intron (NM_001101676, intron 2 of 4) Charlie15b|DNA|hAT-Charlie -118463 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 239.333-18 chr21 19023155 19023366 + 1.83333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -263448 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 399.666-3 chr18 44064350 44064757 + 1.83333 NA Intergenic MIR3|SINE|MIR 467144 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 293.667-27 chr9 26904428 26904712 + 1.83333 NA 3' UTR (NM_001031689, exon 14 of 14) 3' UTR (NM_001031689, exon 14 of 14) -11742 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 261.5-34 chr7 93686998 93687576 + 1.83333 NA Intergenic Intergenic -29641 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 446.834-5 chr9 107953168 107953625 + 1.83333 NA Intergenic Intergenic -463627 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 984.666 chr6 91081051 91081869 + 1.83333 NA Intergenic Intergenic -440200 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 172-44 chr6 44847200 44847352 + 1.83333 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -295395 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 388-13 chr5 73883862 73884352 + 1.83333 NA intron (NM_001177693, intron 24 of 35) intron (NM_001177693, intron 24 of 35) 70561 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 255.5-10 chr12 59931290 59931464 + 1.83333 NA Intergenic L1MA3|LINE|L1 242007 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 236.666-5 chr3 190050647 190050844 + 1.83333 NA intron (NM_001134418, intron 1 of 14) L3|LINE|CR1 70152 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 227.666-5 chr15 48775460 48775658 + 1.83333 NA intron (NM_014985, intron 12 of 25) L1MEf|LINE|L1 35510 NM_001194998 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 561.666 chr21 27564903 27565370 + 1.83333 NA Intergenic Intergenic -157243 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 301.333-19 chr6 123260563 123260754 + 1.83333 NA intron (NM_006073, intron 33 of 40) A-rich|Low_complexity|Low_complexity -178946 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 197.833-35 chr9 68831274 68831396 + 1.83333 NA intron (NM_003558, intron 4 of 15) MIR|SINE|MIR 51270 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 260.666-2 chr20 57073367 57073526 + 1.83333 NA Intergenic Intergenic -140250 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 588.5 chr8 16077379 16077817 + 1.83333 NA Intergenic MSTB1|LTR|ERVL-MaLR 108674 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 291.166-6 chr2 59818111 59818525 + 1.83333 NA Intergenic Intergenic 564718 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 330-20 chr6 47978582 47979004 + 1.83333 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 89896 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 374.667-2 chr1 217838268 217838665 + 1.83333 NA intron (NM_138796, intron 9 of 10) intron (NM_138796, intron 9 of 10) -53346 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 344.5 chr1 157022629 157023045 + 1.83333 NA intron (NM_014784, intron 1 of 39) L1MB7|LINE|L1 22905 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 378.833-6 chr2 171660946 171661208 + 1.83333 NA Intergenic FRAM|SINE|Alu -26392 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 315.166 chr2 171706559 171706847 + 1.83333 NA intron (NM_001378, intron 4 of 17) intron (NM_001378, intron 4 of 17) 18948 NM_001271789 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 406.5-6 chr3 49170603 49171168 + 1.83333 NA promoter-TSS (NM_173546) promoter-TSS (NM_173546) -713 NM_173546 200942 Hs.13781 NM_173546 ENSG00000185909 KLHDC8B CHL kelch domain containing 8B protein-coding 404 chr1 171775543 171775863 + 1.83333 NA Intergenic Intergenic -5957 NM_001007239 51603 Hs.494705 NM_014955 ENSG00000010165 EEF1AKNMT 5630401D24Rik|CGI-01|DFNB26|DFNB26M|KIAA0859|METTL13|feat eEF1A lysine and N-terminal methyltransferase protein-coding 380.666-4 chr3 99183870 99184392 + 1.83333 NA Intergenic L1ME2z|LINE|L1 -282436 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 189.5-38 chr8 18668994 18669167 + 1.83333 NA intron (NM_015310, intron 9 of 15) intron (NM_015310, intron 9 of 15) 139787 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 401.666-2 chr2 55928148 55928598 + 1.83333 NA Intergenic Charlie13a|DNA|hAT-Charlie -4591 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 423.167-6 chr12 10697187 10697591 + 1.83333 NA Intergenic Intergenic -23337 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 408.667-5 chr6 116561533 116562086 + 1.83333 NA TTS (NM_001256887) TTS (NM_001256887) 8678 NM_001366078 221301 Hs.350750 NM_153036 ENSG00000164451 CALHM4 C6orf78|FAM26D calcium homeostasis modulator family member 4 protein-coding 439.499 chr1 162055292 162055626 + 1.83333 NA Intergenic Intergenic -14232 NM_014697 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 268.166 chr1 23175068 23175506 + 1.83333 NA Intergenic MIRb|SINE|MIR -6429 NM_001142546 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 206.5-13 chr12 113901978 113902154 + 1.83333 NA intron (NM_001146698, intron 21 of 24) L1MD2|LINE|L1 64259 NM_001146698 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 690.999-2 chr3 99687176 99687805 + 1.83333 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) 48896 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 240.834-6 chr2 27669395 27669693 + 1.83333 NA intron (NM_018158, intron 5 of 13) L1ME4b|LINE|L1 -5704 NM_001282732 9913 Hs.6232 NM_014860 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H SPT7 like, STAGA complex gamma subunit protein-coding 351.666-2 chr7 38943715 38943908 + 1.83333 NA Intergenic Intergenic -34098 NM_001370959 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 187.5-25 chr22 49919753 49919971 + 1.83333 NA intron (NM_001135101, intron 3 of 10) intron (NM_001135101, intron 3 of 10) 1228 NM_001135101 79174 Hs.211282 NM_024324 ENSG00000184164 CRELD2 - cysteine rich with EGF like domains 2 protein-coding 740.666 chr5 151651980 151652493 + 1.83333 NA Intergenic Intergenic -24709 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CLMAT3 CTB-113P19.1|SPARC-AS1 colorectal liver metastasis associated transcript 3 ncRNA 407.166 chr11 63945775 63945998 + 1.83333 NA exon (NM_024771, exon 2 of 8) exon (NM_024771, exon 2 of 8) 6555 NM_001300800 79829 Hs.523753 NM_024771 ENSG00000110583 NAA40 NAT11|NatD|PATT1|hNatD N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding 229.5-35 chr6 35686066 35686250 + 1.83333 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) 2757 NM_001145776 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 247.999 chr12 88153944 88154099 + 1.83333 NA intron (NM_181783, intron 3 of 13) L1MC4a|LINE|L1 11714 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 387-5 chr14 57490730 57491020 + 1.83333 NA intron (NM_001283060, intron 2 of 5) intron (NM_001283060, intron 2 of 5) 2982 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 440.001-2 chr20 41955831 41956254 + 1.83333 NA Intergenic Intergenic -337665 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 534.833-2 chr14 60907950 60908391 + 1.83333 NA intron (NM_001177963, intron 6 of 6) Zaphod3|DNA|hAT-Tip100 72909 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 271.666-7 chr6 134993945 134994111 + 1.83333 NA intron (NM_006620, intron 7 of 17) intron (NM_006620, intron 7 of 17) -14596 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 338.333-5 chr16 82629567 82629928 + 1.83333 NA intron (NM_001220492, intron 1 of 5) intron (NM_001220492, intron 1 of 5) 2778 NM_001220489 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 587.833 chr19 27962317 27962879 + 1.83333 NA intron (NR_146734, intron 3 of 7) intron (NR_146734, intron 3 of 7) -168658 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 298.666-7 chr19 29687417 29687754 + 1.83333 NA Intergenic Intergenic 22124 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 467.833-2 chr1 147273391 147274069 + 1.83333 NA intron (NR_145686, intron 12 of 22) intron (NR_145686, intron 12 of 22) 30588 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 437.666 chr1 28077582 28078004 + 1.83333 NA intron (NM_001282562, intron 1 of 16) intron (NM_001282562, intron 1 of 16) 10817 NM_001282560 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 372-11 chr4 45013220 45013580 + 1.83333 NA Intergenic Intergenic -286766 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 312.999 chr11 47161769 47162005 + 1.83333 NA non-coding (NR_103471, exon 10 of 10) non-coding (NR_103471, exon 10 of 10) 14992 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 357.333-10 chr3 41602743 41602969 + 1.83333 NA intron (NR_136342, intron 29 of 34) L1MDa|LINE|L1 359247 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 225-2 chr1 169933198 169933477 + 1.83333 NA intron (NM_014970, intron 19 of 19) intron (NM_014970, intron 19 of 19) -39378 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 340.999 chr17 17613891 17614100 + 1.83333 NA Intergenic L1MC5|LINE|L1 -22287 NM_148172 10400 Hs.714193 NM_007169 ENSG00000133027 PEMT PEAMT|PEMPT|PEMT2|PLMT|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 843.334-2 chr7 96075070 96075999 + 1.83333 NA intron (NM_004411, intron 14 of 16) intron (NM_004411, intron 14 of 16) 144222 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 213.833-19 chr6 19949317 19949545 + 1.83333 NA Intergenic L1ME4a|LINE|L1 112061 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 273.334-9 chr8 119103136 119103423 + 1.83333 NA intron (NM_001324095, intron 6 of 7) intron (NM_001324095, intron 6 of 7) -34497 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 318.5-2 chr12 122665196 122665391 + 1.83333 NA Intergenic L1MB5|LINE|L1 30706 NR_162094 113218484 NR_162094 MIR9902-1 - microRNA 9902-1 ncRNA 202.167-25 chr22 25080985 25081150 + 1.83333 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 31625 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 314.333-12 chr7 84419743 84419960 + 1.83333 NA Intergenic L1MB4|LINE|L1 -112625 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 167.833-45 chr7 101889044 101889146 + 1.83333 NA intron (NM_181552, intron 1 of 23) AluJr|SINE|Alu 71469 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 201.333-50 chr8 56170869 56171126 + 1.83333 NA intron (NM_002655, intron 3 of 4) intron (NM_002655, intron 3 of 4) 40276 NM_001114635 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 297.333-21 chr8 120135855 120136152 + 1.83333 NA intron (NM_021110, intron 1 of 47) L1MEb|LINE|L1 10901 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 422.333 chr1 211029532 211029913 + 1.83333 NA intron (NM_002238, intron 5 of 10) L1MD1|LINE|L1 103652 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 636.167 chr4 97986965 97987690 + 1.83333 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 156149 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 463.834-3 chr8 110750869 110751305 + 1.83333 NA Intergenic Intergenic 276346 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 215.666 chr17 44071523 44071662 + 1.83333 NA intron (NR_028582, intron 1 of 5) (TTCA)n|Simple_repeat|Simple_repeat 681 NR_028581 92579 Hs.294005 NM_138387 ENSG00000141349 G6PC3 SCN4|UGRP glucose-6-phosphatase catalytic subunit 3 protein-coding 360.5-3 chr17 8616965 8617316 + 1.83333 NA intron (NM_001256012, intron 2 of 42) LTR33|LTR|ERVL 13585 NM_005964 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 232-20 chr2 46632417 46632702 + 1.83333 NA Intergenic MamRep564|Unknown|Unknown 15344 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 427.333-3 chr22 22891636 22892034 + 1.83333 NA intron (NM_001256296, intron 1 of 1) L1M5|LINE|L1 4019 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 313.666-5 chr22 33472607 33472857 + 1.83333 NA intron (NM_133642, intron 6 of 14) MER20B|DNA|hAT-Charlie -36063 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 238.5-31 chr8 91278719 91278900 + 1.83333 NA intron (NM_134266, intron 2 of 18) L1MA8|LINE|L1 29490 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 379.166-5 chr9 83985136 83985454 + 1.83333 NA intron (NM_024945, intron 1 of 2) intron (NM_024945, intron 1 of 2) 4490 NM_001358293 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 352.833-3 chr8 85071024 85071264 + 1.83333 NA Intergenic Charlie1a|DNA|hAT-Charlie -36094 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 410.001-2 chr5 44020559 44021004 + 1.83333 NA Intergenic Intergenic -367951 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 397.5 chr1 20494620 20495123 + 1.83333 NA Intergenic MIR3|SINE|MIR -8661 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 281.833-17 chrX 47831572 47832029 + 1.83333 NA Intergenic Intergenic -5102 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 172.166 chr4 157210003 157210128 + 1.83333 NA Intergenic ERVL-E-int|LTR|ERVL -10519 NM_001083619 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 257.166-2 chr15 85501602 85501748 + 1.83333 NA intron (NM_007200, intron 2 of 36) MIRb|SINE|MIR -118275 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 262.667-34 chr8 123395364 123395675 + 1.83333 NA intron (NM_014109, intron 1 of 27) MIR|SINE|MIR 928 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 376.667-3 chr15 36810996 36811395 + 1.83333 NA TTS (NM_001321757) TTS (NM_001321757) 7311 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 694.499 chr5 54531157 54532005 + 1.83333 NA intron (NM_001145427, intron 1 of 1) intron (NM_001145427, intron 1 of 1) 13822 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 262.5-4 chr11 12066257 12066474 + 1.83333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 35490 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 417.5-5 chr13 23921147 23921603 + 1.83333 NA intron (NR_073430, intron 3 of 4) L1MC|LINE|L1 -23873 NR_104426 387911 Hs.740810 NM_001007537 ENSG00000205863 C1QTNF9B CTRP9B C1q and TNF related 9B protein-coding 228.167-16 chr2 53885313 53885502 + 1.83333 NA intron (NM_014614, intron 41 of 46) intron (NM_014614, intron 41 of 46) -25374 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 319.5-20 chrX 154596502 154596961 + 1.83333 NA Intergenic Intergenic 11577 NM_001327 1485 Hs.534310 NM_001327 ENSG00000184033 CTAG1B CT6.1|CTAG|CTAG1|ESO1|LAGE-2|LAGE2B|NY-ESO-1 cancer/testis antigen 1B protein-coding 355-2 chr15 62822819 62823281 + 1.83333 NA promoter-TSS (NR_029709) promoter-TSS (NR_029709) -907 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 311.333-20 chr7 11760019 11760277 + 1.83333 NA intron (NM_015204, intron 1 of 26) L1MEd|LINE|L1 72050 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 323.667-4 chr1 101309168 101309468 + 1.83333 NA Intergenic MER5A|DNA|hAT-Charlie -14519 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 260.167-15 chr21 21948846 21949090 + 1.83333 NA Intergenic L2|LINE|L2 149491 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 316.333-9 chr17 51297100 51297285 + 1.83333 NA intron (NM_016001, intron 13 of 13) intron (NM_016001, intron 13 of 13) 36646 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 235.167-25 chr5 171484386 171484720 + 1.83333 NA Intergenic Intergenic 64906 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 320.499 chr2 193839042 193839323 + 1.83333 NA Intergenic Intergenic -505087 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 519.166 chr1 174217942 174218338 + 1.83333 NA intron (NM_001366445, intron 1 of 13) L2a|LINE|L2 -56960 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 294.667 chr1 32063155 32063835 + 1.83333 NA Intergenic Intergenic -8536 NM_001319677 55116 Hs.25544 NM_018056 ENSG00000121775 TMEM39B - transmembrane protein 39B protein-coding 301.5-9 chr14 62772006 62772242 + 1.83333 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 273334 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 753.5 chr9 113737215 113737949 + 1.83333 NA Intergenic Intergenic -138700 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 375.167-4 chr2 44233783 44234116 + 1.83333 NA 3' UTR (NM_177968, exon 6 of 6) 3' UTR (NM_177968, exon 6 of 6) -41531 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 695-3 chr6 13907072 13907839 + 1.83333 NA Intergenic Intergenic -16991 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 189.666 chr10 52222696 52222864 + 1.83333 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 91348 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 290.499 chr1 79518320 79518490 + 1.83333 NA Intergenic Intergenic -511675 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 343.167-7 chr9 2333298 2333692 + 1.83333 NA Intergenic Intergenic 175039 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 304.166-2 chr17 63075087 63075309 + 1.83333 NA intron (NM_025185, intron 3 of 25) intron (NM_025185, intron 3 of 25) 108963 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 183.666-2 chr10 96830699 96830940 + 1.83333 NA non-coding (NR_135921, exon 1 of 1) non-coding (NR_135921, exon 1 of 1) -1479 NM_001346516 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 568.166 chr5 16159796 16160244 + 1.83333 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 19771 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 246.333-35 chr6 48861711 48861888 + 1.83333 NA Intergenic Intergenic 601454 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 360.667-9 chr4 96164853 96165193 + 1.83333 NA Intergenic Intergenic -145680 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 273.167-11 chr4 67540556 67540943 + 1.83333 NA intron (NR_155754, intron 3 of 18) intron (NR_155754, intron 3 of 18) 4754 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 353.666-3 chr6 147262379 147262686 + 1.83333 NA intron (NM_139244, intron 6 of 25) intron (NM_139244, intron 6 of 25) -57918 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 383.5-4 chr20 47148127 47148531 + 1.83333 NA intron (NM_172110, intron 10 of 13) MIRb|SINE|MIR -18638 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 307.667-15 chr4 111023670 111024131 + 1.83333 NA Intergenic Intergenic -163253 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 256.167-3 chr1 64649671 64650042 + 1.83333 NA intron (NM_020925, intron 9 of 26) intron (NM_020925, intron 9 of 26) 70009 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 389.666 chr1 65439882 65440319 + 1.83333 NA intron (NM_001003679, intron 2 of 19) L2a|LINE|L2 19384 NM_001198681 54741 Hs.23581 NM_017526 ENSG00000213625 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 203.833-13 chr2 20699357 20699541 + 1.83333 NA intron (NR_104233, intron 4 of 4) intron (NR_104233, intron 4 of 4) 32305 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 615.001 chr12 60306602 60307269 + 1.83333 NA Intergenic Intergenic 617565 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 962.5 chr20 23357929 23359207 + 1.83333 NA promoter-TSS (NR_109884) promoter-TSS (NR_109884) -441 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 463-3 chr15 60212412 60212888 + 1.83333 NA Intergenic Intergenic 185336 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 326.167-8 chr2 170324462 170324724 + 1.83333 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 26350 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 333.166-4 chr2 114408357 114408634 + 1.83333 NA Intergenic L1P3|LINE|L1 -34146 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 367.166-2 chr11 111596319 111596639 + 1.83333 NA Intergenic L1MA10|LINE|L1 -5970 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 237.666-4 chr18 11859045 11859246 + 1.83333 NA intron (NM_001261444, intron 1 of 7) intron (NM_001261444, intron 1 of 7) 1392 NM_001261444 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 339.667-12 chr2 8690531 8690866 + 1.83333 NA Intergenic L1MC5a|LINE|L1 8642 NM_002166 3398 Hs.180919 NM_002166 ENSG00000115738 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2 protein-coding 372-8 chr2 100011612 100011883 + 1.83333 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 93836 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 270.166-6 chr6 2822227 2822474 + 1.83333 NA Intergenic L1M5|LINE|L1 19513 NM_030666 1992 Hs.381167 NM_030666 ENSG00000021355 SERPINB1 EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin family B member 1 protein-coding 399.666-5 chr3 55235213 55235462 + 1.83333 NA Intergenic L1PB3|LINE|L1 57165 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 783.166 chr14 44924913 44925907 + 1.83333 NA 3' UTR (NM_001308112, exon 5 of 5) 3' UTR (NM_001308112, exon 5 of 5) -13493 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 280.833-12 chr5 89890773 89891054 + 1.83333 NA Intergenic Intergenic 125807 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 868.999 chr12 3275154 3276423 + 1.83333 NA intron (NM_001168320, intron 2 of 7) intron (NM_001168320, intron 2 of 7) 90334 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 280.333-18 chr21 14489672 14489961 + 1.83333 NA intron (NM_022136, intron 7 of 7) intron (NM_022136, intron 7 of 7) 56499 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 320.5-7 chr12 118373012 118373361 + 1.83333 NA promoter-TSS (NM_016281) promoter-TSS (NM_016281) -279 NM_001346487 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 391.999 chr2 25319473 25319726 + 1.83333 NA intron (NR_135490, intron 1 of 23) intron (NR_135490, intron 1 of 23) 9122 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 362.833-2 chr10 76988266 76988512 + 1.83333 NA intron (NM_001322838, intron 19 of 29) FRAM|SINE|Alu 100345 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 270.666-8 chr2 172933067 172933461 + 1.83333 NA intron (NM_001282901, intron 1 of 24) L2|LINE|L2 5059 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 179-34 chr6 12603556 12603706 + 1.83333 NA Intergenic Intergenic -18227 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 352.5-13 chr5 133101252 133101653 + 1.83333 NA intron (NM_002154, intron 16 of 18) L1MC5|LINE|L1 49439 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 212.833-15 chr4 7852945 7853140 + 1.83333 NA intron (NM_198595, intron 4 of 16) ERVL-E-int|LTR|ERVL 19266 NM_001371090 271.667-23 chr7 30981569 30981827 + 1.83333 NA Intergenic L1M4|LINE|L1 17745 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 383-8 chr4 91725892 91726256 + 1.83333 NA Intergenic L1MD|LINE|L1 551228 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 347.5-10 chr2 235943961 235944310 + 1.83333 NA intron (NM_001037131, intron 12 of 17) intron (NM_001037131, intron 12 of 17) 224251 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 689.001-2 chr10 87772056 87772938 + 1.83333 NA intron (NM_001321967, intron 6 of 9) intron (NM_001321967, intron 6 of 9) 45734 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 311.666-11 chr9 19950152 19950378 + 1.83333 NA Intergenic MIR|SINE|MIR -163246 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 420.5-6 chr14 41162270 41162696 + 1.83333 NA Intergenic Intergenic 207772 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 548.667 chr1 152187490 152188037 + 1.83333 NA Intergenic MER4C|LTR|ERV1 -28535 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 441.667-10 chr9 34178655 34179061 + 1.83333 NA promoter-TSS (NM_001171204) promoter-TSS (NM_001171204) -147 NM_001171202 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 714.666 chr11 125348443 125349206 + 1.83333 NA intron (NM_022062, intron 3 of 12) intron (NM_022062, intron 3 of 12) -146390 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 752.499-2 chr7 44606145 44606942 + 1.83333 NA promoter-TSS (NM_001003941) promoter-TSS (NM_001003941) -84 NM_001363523 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 322.667-22 chr6 56978634 56978898 + 1.83333 NA intron (NM_001318539, intron 1 of 3) Cheshire|DNA|hAT-Charlie 23659 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 293-16 chr5 5555666 5555892 + 1.83333 NA Intergenic Intergenic 133102 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 381.333-2 chr13 110112547 110112819 + 1.83333 NA Intergenic MLT1F1|LTR|ERVL-MaLR -9019 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 369.5-5 chr13 58424773 58425157 + 1.83333 NA Intergenic A-rich|Low_complexity|Low_complexity -191848 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 213.166-4 chr3 110951689 110951873 + 1.83333 NA Intergenic MSTA-int|LTR|ERVL-MaLR 118178 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 534-2 chr8 132395503 132396001 + 1.83333 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR 51510 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 445.333-11 chr8 71830940 71831229 + 1.83333 NA Intergenic L2c|LINE|L2 -12039 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 344.833-10 chr8 84210012 84210425 + 1.83333 NA intron (NM_001354323, intron 1 of 7) (AT)n|Simple_repeat|Simple_repeat 25552 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 245.5-16 chr20 23637391 23637745 + 1.83333 NA intron (NM_001288614, intron 1 of 3) CpG 387 NM_001288614 1471 Hs.304682 NM_000099 ENSG00000101439 CST3 ARMD11|HEL-S-2 cystatin C protein-coding 485.334 chr6 36955842 36956274 + 1.83333 NA intron (NM_001199159, intron 2 of 7) MIRc|SINE|MIR 1320 NM_153370 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CD364|CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 457.666 chr1 31593956 31594420 + 1.83333 NA Intergenic Intergenic 16043 NM_001204415 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 372.001 chr12 3995542 3996208 + 1.83333 NA Intergenic Intergenic -122427 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 231.166 chr2 122113345 122113494 + 1.83333 NA Intergenic Intergenic 357768 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 263-20 chrX 13452341 13452838 + 1.83333 NA Intergenic MLT1K|LTR|ERVL-MaLR -117012 NM_001167890 25975 Hs.12844 NM_015507 ENSG00000198759 EGFL6 MAEG|W80 EGF like domain multiple 6 protein-coding 390.5-11 chr8 123490178 123490863 + 1.83333 NA Intergenic Intergenic 41623 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 297.666-3 chr6 67694820 67694995 + 1.83333 NA Intergenic Intergenic -360444 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 355.833-4 chr14 80847684 80847896 + 1.83333 NA intron (NM_152446, intron 9 of 24) L2c|LINE|L2 93948 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 386.667-7 chr2 48024534 48025007 + 1.83333 NA Intergenic Intergenic -118977 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 308.5-5 chr10 97990825 97991029 + 1.83333 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) 39694 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 292.333-3 chr10 48209886 48210159 + 1.83333 NA intron (NM_001018071, intron 13 of 28) L1ME4a|LINE|L1 -34879 NM_001042512 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 192.667-27 chr4 123939127 123939592 + 1.83333 NA Intergenic MADE2|DNA|TcMar-Mariner 165095 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 218.5-35 chrX 70769819 70770050 + 1.83333 NA intron (NM_001003811, intron 10 of 30) MIRb|SINE|MIR 76361 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 313.501 chr17 48045982 48046331 + 1.83333 NA Intergenic Intergenic -2203 NM_001330261 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 374.999-2 chr6 135615873 135616301 + 1.83333 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 118286 NR_152843 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 378-3 chr10 89279752 89280167 + 1.83333 NA Intergenic L1ME3G|LINE|L1 -22087 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 216.333-12 chr11 114543592 114543850 + 1.83333 NA intron (NM_152315, intron 2 of 5) L1MC3|LINE|L1 16160 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 787-2 chr16 46929529 46930342 + 1.83333 NA 3' UTR (NM_133443, exon 12 of 12) 3' UTR (NM_133443, exon 12 of 12) -43461 NR_145840 109623466 NR_145840 SNORD148 - small nucleolar RNA, C/D box 148 snoRNA 516.5-4 chr3 134846838 134847206 + 1.83333 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 51762 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 172-23 chr18 64050861 64050973 + 1.83333 NA Intergenic L1ME3B|LINE|L1 -53174 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 304.5-13 chr2 71106454 71106654 + 1.83333 NA Intergenic AluSx1|SINE|Alu 23675 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 251.167-13 chr20 55006352 55006586 + 1.83333 NA Intergenic Intergenic -416574 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 209.5-15 chr14 97166660 97166786 + 1.83333 NA Intergenic Intergenic 11866 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 302.833-12 chr9 6682255 6682533 + 1.83333 NA Intergenic AluSp|SINE|Alu -36702 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 191.333-26 chr20 11325603 11325748 + 1.83333 NA Intergenic L1ME3B|LINE|L1 -52292 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 316.5-18 chr22 28067757 28067969 + 1.83333 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -147251 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 273-3 chr10 56355781 56356143 + 1.83333 NA Intergenic L1MEd|LINE|L1 5297 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 420.5 chr1 62436311 62436771 + 1.83333 NA promoter-TSS (NM_003368) promoter-TSS (NM_003368) 237 NM_001017415 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 322.666-9 chr5 2969363 2969634 + 1.83333 NA Intergenic Intergenic 51644 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 295-18 chr4 47463447 47463708 + 1.83333 NA intron (NM_001329668, intron 1 of 4) CpG 125 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 177.667-37 chr6 116779723 116779986 + 1.83333 NA Intergenic Intergenic -14135 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 484.167 chr3 2927265 2927747 + 1.83333 NA intron (NM_175607, intron 13 of 24) MLT1I|LTR|ERVL-MaLR 35291 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 265.833-18 chr8 119850723 119851021 + 1.83333 NA intron (NM_024094, intron 2 of 8) L3|LINE|CR1 5022 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 201.333-47 chr7 38550099 38550351 + 1.83333 NA intron (NM_001635, intron 1 of 20) MER5A1|DNA|hAT-Charlie 81148 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 332-7 chr14 68381034 68381335 + 1.83333 NA intron (NM_133509, intron 8 of 10) MIR3|SINE|MIR 247603 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 680.5 chr10 24518888 24519590 + 1.83333 NA intron (NM_001321681, intron 6 of 13) intron (NM_001321681, intron 6 of 13) 52708 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 321.667-7 chr22 35367379 35367741 + 1.83333 NA Intergenic MER84|LTR|ERV1 -13536 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 574.667 chr2 10832133 10832724 + 1.83333 NA promoter-TSS (NM_001282706) promoter-TSS (NM_001282706) 57 NM_001282706 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 311.333-12 chr18 43267502 43268012 + 1.83333 NA TTS (NM_020783) TTS (NM_020783) 9733 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 256.5-22 chr7 116216966 116217166 + 1.83333 NA intron (NM_015641, intron 1 of 6) intron (NM_015641, intron 1 of 6) -5887 NM_152829 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 403.833-2 chr12 63211285 63211589 + 1.83333 NA Intergenic Intergenic -58627 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 432.833-5 chr9 114653744 114654150 + 1.83333 NA Intergenic MIR|SINE|MIR 3858 NM_001354645 105376230 Hs.147369 NM_001354645 ENSG00000230054 TEX53 - testis expressed 53 protein-coding 255.666-3 chr13 47217728 47218161 + 1.83333 NA Intergenic Intergenic -320868 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 455.667-3 chr5 28606276 28606744 + 1.83333 NA Intergenic Intergenic -318845 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 297.499 chr10 15892001 15892175 + 1.83333 NA Intergenic L1ME3G|LINE|L1 -31555 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 445.167 chr11 107857398 107857894 + 1.83333 NA intron (NM_017515, intron 1 of 7) intron (NM_017515, intron 1 of 7) 1141 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 390.834-5 chr4 118865292 118865703 + 1.83333 NA intron (NM_001286754, intron 1 of 4) intron (NM_001286754, intron 1 of 4) 14816 NM_001286754 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 275.167-15 chr18 75541418 75541709 + 1.83333 NA Intergenic L1MD2|LINE|L1 -113860 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 440.833 chr11 125405011 125405467 + 1.83333 NA intron (NM_022062, intron 7 of 12) intron (NM_022062, intron 7 of 12) -89975 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 282.333-8 chr3 41527074 41527330 + 1.83333 NA intron (NR_136342, intron 30 of 34) intron (NR_136342, intron 30 of 34) 327697 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 494.5-4 chr14 50532548 50533180 + 1.83333 NA promoter-TSS (NM_006575) promoter-TSS (NM_006575) -218 NM_001127713 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 528.333-2 chr15 39706366 39706875 + 1.83333 NA intron (NM_152597, intron 10 of 11) L1ME4a|LINE|L1 76221 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 551.166 chr2 101002013 101002451 + 1.83333 NA promoter-TSS (NM_001098577) promoter-TSS (NM_001098577) 3 NM_001098577 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 423.499-2 chr7 4664986 4665303 + 1.83333 NA Intergenic AluSg|SINE|Alu -17151 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 224.833-5 chr10 119627608 119627860 + 1.83333 NA Intergenic Intergenic -23636 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 859.667-2 chr15 100671747 100672595 + 1.83333 NA Intergenic Intergenic 69582 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 330.666-5 chr4 123066089 123066299 + 1.83333 NA intron (NM_001345856, intron 13 of 15) intron (NM_001345856, intron 13 of 15) 143116 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 501.833 chr1 159132242 159132718 + 1.83333 NA Intergenic Intergenic -39135 NM_021189 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 241.167-9 chr12 106635791 106636036 + 1.83333 NA intron (NM_001206691, intron 2 of 17) L1ME4c|LINE|L1 34765 NM_001206691 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 425.166 chr2 200703055 200703396 + 1.83333 NA intron (NR_135011, intron 2 of 31) intron (NR_135011, intron 2 of 31) 7502 NR_135012 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 476.166-2 chr5 111254804 111255299 + 1.83333 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 30667 NM_001323376 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 281.833-16 chr8 68141489 68141753 + 1.83333 NA intron (NM_024870, intron 33 of 39) L2a|LINE|L2 -188752 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 218.833-20 chr6 49328262 49328388 + 1.83333 NA Intergenic L1MCb|LINE|L1 134928 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 529.001-2 chr9 19028582 19029460 + 1.83333 NA intron (NM_001287049, intron 1 of 3) intron (NM_001287049, intron 1 of 3) 4188 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 264.666-3 chr1 219549187 219549472 + 1.83333 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 7995 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 208.166 chr11 24296813 24296994 + 1.83333 NA Intergenic Intergenic -200150 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 373.5-8 chr5 127684497 127684869 + 1.83333 NA Intergenic Intergenic -18706 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 240.5-16 chr22 20527050 20527303 + 1.83333 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 19129 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 247-27 chr4 128807016 128807244 + 1.83333 NA Intergenic MIR3|SINE|MIR -2570 NM_024900 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 269-31 chr8 89753594 89753812 + 1.83333 NA intron (NR_125822, intron 1 of 4) L1MC4a|LINE|L1 4008 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 311-5 chr15 89088079 89088408 + 1.83333 NA promoter-TSS (NM_152924) promoter-TSS (NM_152924) -213 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 254-28 chr8 118601315 118601483 + 1.83333 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -19602 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 271.833-6 chr12 89462545 89462770 + 1.83333 NA intron (NR_037659, intron 8 of 11) intron (NR_037659, intron 8 of 11) 62139 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 260.333-22 chr8 108732998 108733161 + 1.83333 NA intron (NR_136411, intron 1 of 3) L1ME2|LINE|L1 54515 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 285.501-2 chr17 66008157 66008479 + 1.83333 NA intron (NM_001353129, intron 16 of 26) L1MA8|LINE|L1 -181775 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 392.166 chr10 88986776 88987198 + 1.83333 NA intron (NM_001320855, intron 1 of 8) intron (NM_001320855, intron 1 of 8) -3811 NR_028034 355 Hs.244139 NM_000043 ENSG00000026103 FAS ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6 Fas cell surface death receptor protein-coding 317.333-14 chr6 24854247 24854605 + 1.83333 NA intron (NM_001286445, intron 8 of 21) intron (NM_001286445, intron 8 of 21) 22844 NM_015864 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 281.5-8 chr14 34834580 34834826 + 1.83333 NA intron (NM_013448, intron 3 of 26) intron (NM_013448, intron 3 of 26) -39488 NR_160776 112268124 Hs.509140 NR_160776 LOC112268124 - uncharacterized LOC112268124 ncRNA 235.167-4 chr1 188158635 188158847 + 1.83333 NA Intergenic Intergenic 715113 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 435.666-3 chr16 12930233 12930643 + 1.83333 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 28840 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 349.166-4 chr9 78261382 78261816 + 1.83333 NA intron (NM_001349840, intron 11 of 15) intron (NM_001349840, intron 11 of 15) 25524 NM_001330693 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 213.333 chr1 103110080 103110257 + 1.83333 NA Intergenic Intergenic -1646 NM_080630 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 201.166-2 chr7 53503743 53503873 + 1.83333 NA Intergenic Intergenic 308123 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 302.666-7 chr4 83789302 83789497 + 1.83333 NA Intergenic Intergenic 253291 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 694.334-2 chr3 146638554 146639335 + 1.83333 NA Intergenic Intergenic -32728 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 436.333-2 chr12 38840739 38841098 + 1.83333 NA intron (NM_153634, intron 4 of 19) Tigger12c|DNA|TcMar-Tigger 64673 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 339-5 chr19 48964857 48965454 + 1.83333 NA promoter-TSS (NM_000146) promoter-TSS (NM_000146) -154 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 241.167-5 chr11 65481454 65481748 + 1.83333 NA Intergenic L4_B_Mam|LINE|RTE-X -16137 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 ncRNA 253.501 chr1 167987671 167987890 + 1.83333 NA intron (NM_001017977, intron 5 of 18) intron (NM_001017977, intron 5 of 18) -10880 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 329.499-3 chr6 83451683 83452028 + 1.83333 NA Intergenic Intergenic -20804 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 228.166-5 chr8 11304477 11304637 + 1.83333 NA intron (NM_015458, intron 3 of 9).2 L3|LINE|CR1 19741 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 322.834-5 chr7 16654324 16654980 + 1.83333 NA intron (NM_001362718, intron 1 of 10) AluSx|SINE|Alu -6562 NM_001362719 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 409-6 chr5 104092403 104092808 + 1.83333 NA Intergenic Intergenic -529816 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 280.5-23 chr8 130503389 130503573 + 1.83333 NA Intergenic LTR8A|LTR|ERV1 -59807 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 262.834-5 chr6 49921322 49921637 + 1.83333 NA Intergenic A-rich|Low_complexity|Low_complexity 27965 NR_163261 403339 Hs.745543 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 pseudo 304.167-6 chr2 70190795 70191228 + 1.83333 NA promoter-TSS (NM_001348761) promoter-TSS (NM_001348761) 8 NR_145970 54980 Hs.720049 NM_017880 ENSG00000115998 C2orf42 - chromosome 2 open reading frame 42 protein-coding 335.333-10 chr7 38512104 38512475 + 1.83333 NA intron (NM_001635, intron 2 of 20) intron (NM_001635, intron 2 of 20) 119084 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 197.667-21 chr14 104274755 104275047 + 1.83333 NA intron (NR_146612, intron 1 of 2) L1MC3|LINE|L1 51317 NR_146613 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 380.666 chr12 20266967 20267369 + 1.83333 NA Intergenic Intergenic -102077 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 587.833-4 chr9 85616698 85617269 + 1.83333 NA intron (NM_015239, intron 17 of 25) intron (NM_015239, intron 17 of 25) 125046 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 280.833-5 chr15 97960391 97960697 + 1.83333 NA promoter-TSS (NM_183376) promoter-TSS (NM_183376) -159 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 363-4 chr2 42127694 42127984 + 1.83333 NA Intergenic Intergenic -41514 NM_019063 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 239.666-2 chr2 38331718 38332045 + 1.83333 NA intron (NM_001330461, intron 1 of 12) L1MB8|LINE|L1 44649 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 593.833-3 chr8 142710687 142711492 + 1.83333 NA intron (NR_038925, intron 1 of 2) MLT1A0-int|LTR|ERVL-MaLR 10978 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 437.501-2 chr9 121351429 121351780 + 1.83333 NA intron (NM_001270526, intron 4 of 6) intron (NM_001270526, intron 4 of 6) 18646 NR_073037 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 189.333-34 chr6 56732573 56732698 + 1.83333 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -89746 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 241.666-2 chr1 175030303 175030504 + 1.83333 NA Intergenic MER45B|DNA|hAT-Tip100 -6948 NR_037606 63931 Hs.654858 NM_022100 ENSG00000120333 MRPS14 COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 319.667-13 chr9 80264389 80264626 + 1.83333 NA Intergenic Intergenic 289484 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1095.67 chr1 178542195 178543378 + 1.83333 NA promoter-TSS (NR_033186) promoter-TSS (NR_033186) -10 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 252.666-7 chr4 29098549 29098927 + 1.83333 NA Intergenic Intergenic 101954 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 354 chr1 197156849 197157241 + 1.83333 NA non-coding (NR_135153, exon 11 of 11) non-coding (NR_135153, exon 11 of 11) -10351 NM_001206846 259266 Hs.121028 NM_018136 ENSG00000066279 ASPM ASP|Calmbp1|MCPH5 abnormal spindle microtubule assembly protein-coding 392.333-4 chr5 97169743 97170123 + 1.83333 NA intron (NM_018343, intron 6 of 9) intron (NM_018343, intron 6 of 9) 13314 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 301-19 chr4 53188533 53188759 + 1.83333 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 177415 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 245.167-14 chr6 97134777 97135042 + 1.83333 NA intron (NR_136579, intron 7 of 7) intron (NR_136579, intron 7 of 7) 124833 NM_001323264 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 562-2 chr3 46281537 46282128 + 1.83333 NA Intergenic MER58A|DNA|hAT-Charlie 39372 NM_178329 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 296.5-12 chr14 53819016 53819251 + 1.83333 NA Intergenic L1M5|LINE|L1 129351 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 343.333-2 chr11 13527283 13527492 + 1.83333 NA Intergenic L2c|LINE|L2 -31212 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 301-20 chr4 106930685 106931010 + 1.83333 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 105466 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 304.5-10 chr14 62470093 62470353 + 1.83333 NA Intergenic Intergenic -330250 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 302.833-2 chr1 221993108 221993453 + 1.83333 NA Intergenic MER1A|DNA|hAT-Charlie -14760 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 194.667-35 chr2 124343959 124344182 + 1.83333 NA intron (NM_130773, intron 3 of 23) MSTB2|LTR|ERVL-MaLR 318783 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 392.666-2 chr6 120559280 120559686 + 1.83333 NA Intergenic L1PA10|LINE|L1 544304 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 280.166-5 chr3 36367013 36367210 + 1.83333 NA Intergenic MER4B-int|LTR|ERV1 -13376 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 573-5 chr9 117487443 117487890 + 1.83333 NA Intergenic Intergenic -72609 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 362.167-6 chr15 81410022 81410526 + 1.83333 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -36061 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 432-5 chr3 112013473 112014171 + 1.83333 NA TTS (NM_001008273) TTS (NM_001008273) 14662 NM_001008273 29114 Hs.169330 NM_013259 ENSG00000144834 TAGLN3 NP22|NP24|NP25 transgelin 3 protein-coding 296.5-3 chr1 190979682 190979962 + 1.83333 NA Intergenic Intergenic 248676 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 318.666-7 chr8 47442934 47443155 + 1.83333 NA intron (NM_001080394, intron 8 of 19) intron (NM_001080394, intron 8 of 19) 182106 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 826.834 chr4 77959293 77960066 + 1.83333 NA Intergenic Intergenic 96849 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 221.666-6 chr3 6479488 6479617 + 1.83333 NA Intergenic L1ME3A|LINE|L1 325897 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 277.667-21 chr3 45938681 45938997 + 1.83333 NA intron (NM_024513, intron 14 of 17) MER112|DNA|hAT-Charlie -4625 NM_006564 10663 Hs.34526 NM_006564 ENSG00000172215 CXCR6 BONZO|CD186|STRL33|TYMSTR C-X-C motif chemokine receptor 6 protein-coding 363.999-4 chr5 58757552 58757779 + 1.83333 NA intron (NM_138453, intron 3 of 4) L1MC4|LINE|L1 174590 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 266.666-6 chr18 41077162 41077429 + 1.83333 NA Intergenic Intergenic 443382 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 378.666-8 chr9 76413332 76413767 + 1.83333 NA Intergenic L1MCa|LINE|L1 14950 NR_026890 653162 Hs.655646 NR_026890 RPSAP9 LAMR1P9|RPSA_20_986 ribosomal protein SA pseudogene 9 pseudo 263.167-9 chr17 27314342 27314619 + 1.83333 NA non-coding (NR_145520, exon 9 of 9) non-coding (NR_145520, exon 9 of 9) 20366 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 241.167-8 chr12 57006599 57006882 + 1.83333 NA promoter-TSS (NM_014830) promoter-TSS (NM_014830) -194 NM_014830 9880 Hs.591025 NM_014830 ENSG00000166860 ZBTB39 ZNF922 zinc finger and BTB domain containing 39 protein-coding 519.833-4 chr6 140391855 140392276 + 1.83333 NA Intergenic L1M4b|LINE|L1 186813 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 421.334-5 chr5 43368540 43368911 + 1.83333 NA Intergenic MLT1C|LTR|ERVL-MaLR 28412 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 352.333-6 chr14 54451007 54451275 + 1.83333 NA Intergenic Intergenic -9767 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 514.333-2 chr14 59027588 59028256 + 1.83333 NA Intergenic Intergenic -160745 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 351.5-7 chr16 53405091 53405336 + 1.83333 NA Intergenic Intergenic -29258 NM_001323608 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 189.5-21 chr2 43271331 43271462 + 1.83333 NA intron (NM_001083953, intron 36 of 37) intron (NM_001083953, intron 36 of 37) 44185 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 571 chr3 154758246 154758691 + 1.83333 NA Intergenic Intergenic -265656 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 199.166 chr21 41121765 41122023 + 1.83333 NA Intergenic LTR41B|LTR|ERVL 26170 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 359.166 chr10 69901556 69902028 + 1.83333 NA intron (NM_001368898, intron 10 of 33) intron (NM_001368898, intron 10 of 33) 99886 NM_001320951 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 379.499-2 chr17 72030837 72031117 + 1.83333 NA intron (NR_110132, intron 1 of 2) intron (NR_110132, intron 1 of 2) 323 NR_110132 102606463 Hs.512309 NR_110124 ENSG00000256124 LINC01152 CMPD|TCONS_00025128 long intergenic non-protein coding RNA 1152 ncRNA 354.333-2 chr10 51977182 51977382 + 1.83333 NA intron (NM_001098512, intron 5 of 17) L1PA13|LINE|L1 -277687 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 400.666-4 chr4 164804900 164805169 + 1.83333 NA Intergenic Intergenic 50903 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 318.167-12 chr9 71191208 71191476 + 1.83333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -69721 NM_001366149 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 672.833-2 chr3 106728284 106728827 + 1.83333 NA Intergenic Intergenic 512083 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 378.999-2 chr21 35565033 35565444 + 1.83333 NA intron (NR_073512, intron 1 of 2) MER74A|LTR|ERVL 15526 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 235.333-3 chr10 83156319 83156535 + 1.83333 NA Intergenic Intergenic 520662 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 430.833-5 chr20 58637817 58638595 + 1.83333 NA Intergenic (TTCA)n|Simple_repeat|Simple_repeat 3434 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 185.5-3 chr1 108783873 108784033 + 1.83333 NA intron (NM_007269, intron 11 of 18) L1ME3|LINE|L1 37279 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 294.334 chr10 121500334 121500873 + 1.83333 NA intron (NR_073009, intron 10 of 16) intron (NR_073009, intron 10 of 16) 30711 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 421.666 chr11 5679870 5680207 + 1.83333 NA exon (NM_033093, exon 2 of 8) exon (NM_033093, exon 2 of 8) 5036 NM_033034 85363 Hs.125300 NM_033034 ENSG00000132256 TRIM5 RNF88|TRIM5alpha tripartite motif containing 5 protein-coding 326.333-5 chr20 45212400 45212787 + 1.83333 NA Intergenic MIRb|SINE|MIR 5560 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 356.333-10 chr4 103093301 103093569 + 1.83333 NA intron (NM_020139, intron 3 of 9) intron (NM_020139, intron 3 of 9) 6399 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 921.166 chr2 85804394 85805332 + 1.83333 NA Intergenic L1ME4b|LINE|L1 -10267 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 248-35 chr7 20052580 20052778 + 1.83333 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 87747 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 309-4 chr1 164794256 164794566 + 1.83333 NA intron (NM_001204963, intron 3 of 8) intron (NM_001204963, intron 3 of 8) -19770 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 237.166-7 chr5 25324070 25324283 + 1.83333 NA Intergenic Intergenic 133223 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 258-6 chr10 121924311 121924536 + 1.83333 NA intron (NR_110006, intron 1 of 9) AluSx3|SINE|Alu 3608 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 714.833 chr3 50615726 50616407 + 1.83333 NA intron (NM_001243926, intron 3 of 12) intron (NM_001243926, intron 3 of 12) -1065 NM_004635 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 200.5-23 chr2 30743688 30743836 + 1.83333 NA intron (NM_144575, intron 12 of 22) intron (NM_144575, intron 12 of 22) 63684 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 628-4 chr7 100538580 100539279 + 1.83333 NA promoter-TSS (NM_006076) promoter-TSS (NM_006076) -274 NM_006076 3268 Hs.521083 NM_006076 ENSG00000106351 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 675 chr11 107563088 107563912 + 1.83333 NA intron (NM_001301010, intron 1 of 11) MIR|SINE|MIR 2235 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 283.667-10 chr5 132716787 132716949 + 1.83333 NA exon (NM_001300791, exon 6 of 19) exon (NM_001300791, exon 6 of 19) 20678 NM_007054 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 517.333 chr1 172825808 172826235 + 1.83333 NA Intergenic Intergenic 166918 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 399.666-2 chr15 67787562 67787940 + 1.83333 NA intron (NM_001206804, intron 21 of 21) intron (NM_001206804, intron 21 of 21) -37758 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 540.666-7 chrX 66732747 66733216 + 1.83333 NA Intergenic MIRc|SINE|MIR -93683 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 541.333-2 chr20 17654740 17655165 + 1.83333 NA intron (NM_001042576, intron 4 of 25) intron (NM_001042576, intron 4 of 25) 27290 NM_001365613 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 639.167-2 chr20 50540643 50541380 + 1.83333 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 30628 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 260.333-13 chr20 54985676 54985857 + 1.83333 NA Intergenic Intergenic -437277 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 313.5-20 chr5 41497098 41497286 + 1.83333 NA intron (NM_001005473, intron 1 of 2) L1M4c|LINE|L1 13409 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 372-2 chr13 113044320 113044693 + 1.83333 NA promoter-TSS (NM_001366645) promoter-TSS (NM_001366645) -140 NM_001366646 23263 Hs.170422 NM_024979 ENSG00000126217 MCF2L ARHGEF14|DBS|OST MCF.2 cell line derived transforming sequence like protein-coding 494.833-2 chr10 74150800 74151122 + 1.83333 NA promoter-TSS (NM_006721) promoter-TSS (NM_006721) -133 NR_135191 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 479.167-5 chrX 88613258 88613781 + 1.83333 NA Intergenic L1MA4|LINE|L1 -133706 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 337.667-11 chr2 72906065 72906427 + 1.83333 NA Intergenic MSTC|LTR|ERVL-MaLR -11273 NM_004097 2016 Hs.516090 NM_004097 ENSG00000135638 EMX1 - empty spiracles homeobox 1 protein-coding 440.167-6 chr19 50025477 50026007 + 1.83333 NA promoter-TSS (NM_001308420) promoter-TSS (NM_001308420) -194 NM_001025778 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - VRK serine/threonine kinase 3 protein-coding 311.667-10 chr19 55549478 55549784 + 1.83333 NA Intergenic MIRb|SINE|MIR -4088 NM_001199824 100130827 Hs.712129 NM_001199824 ENSG00000231274 SBK3 SGK110 SH3 domain binding kinase family member 3 protein-coding 353.5-9 chr19 41746601 41747078 + 1.83333 NA Intergenic Intergenic -8691 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 400.501 chr5 66974560 66974991 + 1.83333 NA intron (NM_001290226, intron 1 of 26) intron (NM_001290226, intron 1 of 26) 15702 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 376.666-3 chr17 15982182 15982455 + 1.83333 NA intron (NM_001042697, intron 3 of 4) intron (NM_001042697, intron 3 of 4) 17386 NM_001042698 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger SWIM-type containing 7 protein-coding 583.667-2 chr11 61567080 61568348 + 1.83333 NA intron (NM_001370211, intron 1 of 7) CpG 13158 NM_001252065 9066 Hs.131188 NM_004200 ENSG00000011347 SYT7 IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII synaptotagmin 7 protein-coding 423-9 chr2 138723057 138723461 + 1.83333 NA intron (NM_007226, intron 1 of 1) intron (NM_007226, intron 1 of 1) 57131 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 414.334-2 chr10 126484582 126485015 + 1.83333 NA intron (NR_146939, intron 4 of 11) L1ME4a|LINE|L1 36695 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 454.5 chr1 10599442 10599840 + 1.83333 NA intron (NM_004565, intron 4 of 8) intron (NM_004565, intron 4 of 8) 124691 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 397.332 chr9 26312799 26313060 + 1.83333 NA Intergenic L2c|LINE|L2 246254 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 393.333-7 chr7 118153511 118154052 + 1.83333 NA Intergenic Intergenic -30383 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 868-2 chr14 74361826 74362922 + 1.83333 NA Intergenic Intergenic 13903 NM_018228 55237 Hs.578167 NM_018228 ENSG00000133980 VRTN C14orf115|vertnin vertebrae development associated protein-coding 308.167-4 chr11 96623967 96624208 + 1.83333 NA Intergenic Intergenic 115662 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 380.834-3 chr2 157190066 157190422 + 1.83333 NA Intergenic Intergenic -67461 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 311.333-9 chr14 73151144 73151465 + 1.83333 NA intron (NM_000021, intron 3 of 11) L1ME3G|LINE|L1 14797 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 411.833 chr11 61827464 61827928 + 1.83333 NA promoter-TSS (NM_004265) promoter-TSS (NM_004265) -604 NM_004265 9415 Hs.502745 NM_004265 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 746.666-2 chr16 1773119 1773902 + 1.83333 NA promoter-TSS (NM_001300900) promoter-TSS (NM_001300900) 282 NM_001257370 197342 Hs.7247 NM_001010865 ENSG00000197774 EME2 SLX2B|gs125 essential meiotic structure-specific endonuclease subunit 2 protein-coding 236.167-13 chr6 38229931 38230167 + 1.83333 NA intron (NM_052893, intron 10 of 11) L2a|LINE|L2 -251547 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 289-26 chr9 126134236 126134602 + 1.83333 NA Intergenic L1M5|LINE|L1 141496 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 407.5-6 chr12 121068686 121069148 + 1.83333 NA Intergenic Intergenic -29675 NM_198213 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 259.666-8 chr8 78191892 78192094 + 1.83333 NA Intergenic L1PA4|LINE|L1 -324347 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 265.833-3 chr1 214025047 214025291 + 1.83333 NA intron (NM_001270616, intron 4 of 4) intron (NM_001270616, intron 4 of 4) 36636 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 327.666-3 chr2 237072511 237072825 + 1.83333 NA Intergenic Intergenic -12773 NM_198189 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 243.166 chr10 47438994 47439292 + 1.83333 NA Intergenic L1PA17|LINE|L1 -24668 NR_134499 105378292 Hs.131331 NR_134499 LOC105378292 - uncharacterized LOC105378292 ncRNA 219.667-6 chr14 62436503 62436753 + 1.83333 NA Intergenic L1MEc|LINE|L1 -296655 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 356-9 chr17 60749984 60750282 + 1.83333 NA intron (NM_001330413, intron 6 of 25) AluSx3|SINE|Alu 72282 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 487.833 chr1 183665167 183665576 + 1.83333 NA intron (NM_001297670, intron 1 of 17) L1MCa|LINE|L1 -12055 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 333.834 chr13 31424095 31424364 + 1.83333 NA Intergenic Intergenic 224254 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 369-9 chr3 24639779 24640033 + 1.83333 NA Intergenic Intergenic -144198 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 376.499 chr2 76853031 76853310 + 1.83333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -132795 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 368.166 chr4 15681598 15681827 + 1.83333 NA promoter-TSS (NM_001145191) promoter-TSS (NM_001145191) -115 NM_001145191 285550 Hs.399980 NM_001145191 ENSG00000237765 FAM200B C4orf53 family with sequence similarity 200 member B protein-coding 400.666-2 chr12 76448502 76448766 + 1.83333 NA intron (NM_001003712, intron 3 of 22) intron (NM_001003712, intron 3 of 22) -25349 NM_001319655 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 389.5-4 chr3 119142723 119142985 + 1.83333 NA intron (NM_152538, intron 1 of 8) L1M4|LINE|L1 3166 NM_001353322 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 328.499-2 chr3 149842125 149842364 + 1.83333 NA intron (NM_007282, intron 2 of 10) intron (NM_007282, intron 2 of 10) 29556 NM_183383 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 453-4 chr2 208395374 208395909 + 1.83333 NA intron (NM_001309516, intron 1 of 12) HUERS-P3-int|LTR|ERV1 -11189 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 251.334-12 chr22 28419776 28420025 + 1.83333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -39969 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 174.833-6 chr11 31239775 31239890 + 1.83333 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 129907 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 198.5-41 chr6 49442432 49442663 + 1.83333 NA intron (NM_000255, intron 9 of 12) L2a|LINE|L2 20706 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 349.666 chr3 22272972 22273251 + 1.83333 NA Intergenic Intergenic 315972 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 496 chr3 186001423 186001917 + 1.83333 NA Intergenic MER5C|DNA|hAT-Charlie 41727 NR_151491 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 362.166 chr12 115114829 115115119 + 1.83333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -430799 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 239-32 chr6 112847365 112847554 + 1.83333 NA Intergenic L1MC3|LINE|L1 500129 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 453.499-2 chr2 74888419 74888773 + 1.83333 NA intron (NM_000189, intron 16 of 17) intron (NM_000189, intron 16 of 17) -20535 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 219.5-25 chr5 3692549 3692788 + 1.83333 NA Intergenic Intergenic 96836 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 224.166-5 chr6 81658649 81658853 + 1.83333 NA Intergenic Intergenic 93930 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 341-7 chr4 44052902 44053171 + 1.83333 NA Intergenic Intergenic 35974 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 185.833-9 chr16 2874954 2875261 + 1.83333 NA Intergenic Intergenic -8088 NM_001142499 114984 Hs.534525 NM_138439 ENSG00000162076 FLYWCH2 - FLYWCH family member 2 protein-coding 260.667-40 chr5 3868689 3868978 + 1.83333 NA Intergenic Intergenic 273001 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 424.833-4 chr3 89618636 89619092 + 1.83333 NA Intergenic Intergenic 511243 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 273.666 chr1 58288346 58288552 + 1.83333 NA Intergenic Intergenic -37902 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 515.833 chr11 66282453 66283023 + 1.83333 NA non-coding (NR_073078, exon 3 of 6) non-coding (NR_073078, exon 3 of 6) 4563 NR_073079 254263 Hs.437072 NM_182553 ENSG00000174871 CNIH2 CNIH-2|Cnil cornichon family AMPA receptor auxiliary protein 2 protein-coding 369-3 chr11 85869135 85869476 + 1.83333 NA intron (NM_001286159, intron 2 of 10) (AACTAA)n|Simple_repeat|Simple_repeat 14204 NM_001286159 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 307.666-4 chrX 58084035 58084308 + 1.83333 NA Intergenic HSAT4|Satellite|centr -173538 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 324.167-14 chr3 80944612 80944993 + 1.83333 NA Intergenic L1MA4A|LINE|L1 -49066 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 179.333-32 chr21 25985092 25985209 + 1.83333 NA intron (NM_001136131, intron 6 of 15) intron (NM_001136131, intron 6 of 15) 155240 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 215.833-8 chr14 81703997 81704399 + 1.83333 NA Intergenic L2a|LINE|L2 38940 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 239.167-32 chr8 38996608 38996855 + 1.83333 NA promoter-TSS (NM_001024381) promoter-TSS (NM_001024381) -222 NM_001024380 83877 Hs.7471 NM_031940 ENSG00000169490 TM2D2 BLP1 TM2 domain containing 2 protein-coding 444.5-7 chr20 57492182 57492611 + 1.83333 NA Intergenic LTR39|LTR|ERV1 32471 NM_001269044 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 900.332 chr19 40465423 40466207 + 1.83333 NA promoter-TSS (NM_000713) promoter-TSS (NM_000713) -70 NM_000713 645 Hs.515785 NM_000713 ENSG00000090013 BLVRB BVRB|FLR|HEL-S-10|SDR43U1 biliverdin reductase B protein-coding 515.499 chr17 61547129 61547791 + 1.83333 NA Intergenic Intergenic 43759 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 261.833-5 chr12 124909187 124909382 + 1.83333 NA Intergenic Intergenic 5366 NM_021009 7316 Hs.520348 NM_021009 ENSG00000150991 UBC HMG20 ubiquitin C protein-coding 311.666-3 chr10 117123511 117123888 + 1.83333 NA intron (NM_001258300, intron 1 of 17) AluSz6|SINE|Alu 2887 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 299-10 chr2 62672797 62673118 + 1.83333 NA promoter-TSS (NM_001142615) promoter-TSS (NM_001142615) -921 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 232.5-7 chr12 57777007 57777249 + 1.83333 NA intron (NM_206914, intron 3 of 3) L2a|LINE|L2 4514 NM_206914 25895 Hs.632720 NM_015433 ENSG00000123427 EEF1AKMT3 FAM119B|METTL21B EEF1A lysine methyltransferase 3 protein-coding 188.667-19 chr19 51267681 51267809 + 1.83333 NA intron (NM_001308437, intron 3 of 3) intron (NM_001308437, intron 3 of 3) -3521 NR_136526 105372444 Hs.740053 NR_136526 ENSG00000268318 LINC01872 - long intergenic non-protein coding RNA 1872 ncRNA 317.166-6 chr5 143177396 143177917 + 1.83333 NA intron (NM_001349547, intron 20 of 21) intron (NM_001349547, intron 20 of 21) -14844 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 430.499 chr13 33724005 33724381 + 1.83333 NA Intergenic Intergenic -47399 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 363.833-8 chr7 7693942 7694231 + 1.83333 NA intron (NM_002947, intron 2 of 7) intron (NM_002947, intron 2 of 7) 24521 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 472.333 chr17 51397778 51398178 + 1.83333 NA Intergenic Intergenic -37449 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 357.166-2 chr12 98566410 98566616 + 1.83333 NA Intergenic Intergenic -27112 NM_005888 5250 Hs.290404 NM_002635 ENSG00000075415 SLC25A3 OK/SW-cl.48|PHC|PTP solute carrier family 25 member 3 protein-coding 484-5 chr9 72958458 72958909 + 1.83333 NA Intergenic MSTB-int|LTR|ERVL-MaLR -5630 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 426.666-3 chr7 52951492 52952037 + 1.83333 NA Intergenic L1MC2|LINE|L1 -83869 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 410.833 chr12 96035536 96035955 + 1.83333 NA promoter-TSS (NM_000895) promoter-TSS (NM_000895) -84 NR_132659 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 385.666 chr1 230917635 230917983 + 1.83333 NA intron (NM_024525, intron 17 of 22) intron (NM_024525, intron 17 of 22) 42963 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 243.5-20 chr22 36215644 36215838 + 1.83333 NA Intergenic MER4CL34|LTR|ERV1 -10908 NM_145660 80832 Hs.115099 NM_030643 ENSG00000100336 APOL4 APOL-IV|APOLIV apolipoprotein L4 protein-coding 482.499 chr6 131309361 131309783 + 1.83333 NA Intergenic L1MEf|LINE|L1 59168 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 241.5-22 chr7 42193000 42193284 + 1.83333 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 44067 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 189 chr1 42439905 42440097 + 1.83333 NA exon (NM_001146192, exon 3 of 7) exon (NM_001146192, exon 3 of 7) 16021 NM_032257 84217 Hs.294009 NM_032257 ENSG00000066185 ZMYND12 - zinc finger MYND-type containing 12 protein-coding 173.833-16 chr13 46026128 46026309 + 1.83333 NA intron (NM_001330566, intron 5 of 19) intron (NM_001330566, intron 5 of 19) 26528 NM_001076788 23091 Hs.136102 NM_015070 ENSG00000123200 ZC3H13 KIAA0853|Xio zinc finger CCCH-type containing 13 protein-coding 372-5 chr17 44820393 44820969 + 1.83333 NA intron (NM_001080383, intron 1 of 2) intron (NM_001080383, intron 1 of 2) 9606 NM_005497 10052 Hs.712052 NM_005497 ENSG00000182963 GJC1 CX45|GJA7 gap junction protein gamma 1 protein-coding 382.333 chr1 165408331 165408776 + 1.83333 NA intron (NM_001256570, intron 8 of 10) intron (NM_001256570, intron 8 of 10) 16431 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 407.834-3 chr19 35826612 35826908 + 1.83333 NA intron (NM_004646, intron 28 of 28) L1MC5a|LINE|L1 -13461 NM_021232 58510 Hs.515366 NM_021232 ENSG00000250799 PRODH2 HSPOX1|HYPDH proline dehydrogenase 2 protein-coding 181.166 chr2 66974128 66974234 + 1.83333 NA Intergenic L1MA5A|LINE|L1 -51691 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 250.334-5 chr2 229582325 229582590 + 1.83333 NA intron (NM_139072, intron 4 of 12) intron (NM_139072, intron 4 of 12) 132098 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 328.334-7 chr6 99334679 99334955 + 1.83333 NA intron (NR_144463, intron 3 of 5) L2c|LINE|L2 14857 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 361.667-15 chr8 53885480 53886112 + 1.83333 NA intron (NR_104579, intron 1 of 3) (T)n|Simple_repeat|Simple_repeat 4924 NR_104579 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 300.667-5 chr15 59869593 59869878 + 1.83333 NA Intergenic Intergenic -134576 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 358.499-3 chr5 133310283 133310507 + 1.83333 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 117311 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 363.666-2 chr14 60816369 60816709 + 1.83333 NA intron (NM_001177963, intron 5 of 6) intron (NM_001177963, intron 5 of 6) 81778 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 409.833-5 chr2 82231720 82232207 + 1.83333 NA Intergenic L1ME3A|LINE|L1 -624840 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 402.834-3 chr10 61533604 61533890 + 1.83333 NA Intergenic MIR|SINE|MIR 53706 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 349.333-6 chr20 37769209 37769542 + 1.83333 NA intron (NM_001281495, intron 8 of 16) L1ME4b|LINE|L1 75345 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 241.333-2 chr10 9608751 9609044 + 1.83333 NA Intergenic Intergenic -313304 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 213.166-3 chr16 53890775 53890991 + 1.83333 NA intron (NM_001363903, intron 7 of 7) intron (NM_001363903, intron 7 of 7) -148510 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 441.501 chr4 127605454 127605799 + 1.83333 NA Intergenic Intergenic -27331 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 368.167-5 chr2 16617702 16618085 + 1.83333 NA intron (NM_030797, intron 2 of 11) MIR3|SINE|MIR 47941 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 466.667 chr10 14032173 14032660 + 1.83333 NA intron (NM_018027, intron 2 of 24) MER20B|DNA|hAT-Charlie -23866 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 235.166-3 chr20 56195838 56196121 + 1.83333 NA Intergenic Intergenic -52753 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 288.167-15 chr20 33522758 33522993 + 1.83333 NA intron (NM_001032999, intron 1 of 10) intron (NM_001032999, intron 1 of 10) 32779 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 174.167-41 chr7 131424358 131424553 + 1.83333 NA intron (NM_001321316, intron 8 of 17) intron (NM_001321316, intron 8 of 17) 96579 NM_013255 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 244.333-25 chr4 115247785 115248047 + 1.83333 NA Intergenic MLT2D|LTR|ERVL -134296 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 446.833-2 chr19 49106589 49107052 + 1.83333 NA intron (NM_001301069, intron 8 of 9) intron (NM_001301069, intron 8 of 9) -7550 NM_022165 64130 Hs.221737 NM_022165 ENSG00000104863 LIN7B LIN-7B|MALS-2|MALS2|VELI2 lin-7 homolog B, crumbs cell polarity complex component protein-coding 514.833-3 chr8 126185111 126185667 + 1.83333 NA Intergenic Intergenic -140106 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 218-19 chr18 78725143 78725454 + 1.83333 NA Intergenic Intergenic -254977 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 538.166-2 chr14 33475825 33476418 + 1.83333 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -232816 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 301.834 chr10 58301112 58301382 + 1.83333 NA Intergenic Intergenic 28432 NR_158219 112268068 Hs.586671 NR_158219 LOC112268068 - uncharacterized LOC112268068 ncRNA 253.333-32 chr6 54164730 54164948 + 1.83333 NA intron (NM_001281746, intron 8 of 11) L1ME1|LINE|L1 53396 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 586.667-3 chr6 12289960 12290469 + 1.83333 NA promoter-TSS (NM_001955) promoter-TSS (NM_001955) -147 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 265.333-23 chr8 120733609 120733825 + 1.83333 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -27536 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 212.333-25 chr5 99135562 99135711 + 1.83333 NA Intergenic MLT1C|LTR|ERVL-MaLR -205922 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 200.833-20 chr2 73233306 73233473 + 1.83333 NA promoter-TSS (NM_032319) promoter-TSS (NM_032319) -105 NR_144358 84279 Hs.61268 NM_032319 ENSG00000135617 PRADC1 C2orf7|PAP21 protease associated domain containing 1 protein-coding 399.667 chr1 59778454 59779124 + 1.83333 NA intron (NR_110627, intron 2 of 2) AluSq2|SINE|Alu 5994 NR_110627 101926944 Hs.720353 NR_110627 LOC101926944 - uncharacterized LOC101926944 ncRNA 308.667-2 chr1 17350611 17350878 + 1.83333 NA intron (NM_012387, intron 10 of 15).2 L2a|LINE|L2 -21452 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 410-3 chr14 43382082 43382439 + 1.83333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 1125023 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 299-19 chr7 10103231 10103616 + 1.83333 NA Intergenic L1MA9|LINE|L1 469153 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 572.834 chr11 111601721 111602390 + 1.83333 NA promoter-TSS (NM_015191) promoter-TSS (NM_015191) -394 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 304-8 chr14 26485542 26485794 + 1.83333 NA intron (NM_001366393, intron 2 of 4) intron (NM_001366393, intron 2 of 4) 67762 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 213.333-12 chr17 27873349 27873528 + 1.83333 NA Intergenic L1MB7|LINE|L1 19927 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 271.5-34 chr5 65042454 65042814 + 1.83333 NA Intergenic MER5A1|DNA|hAT-Charlie 273704 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 602.166-2 chr6 19024342 19025024 + 1.83333 NA Intergenic L1ME3F|LINE|L1 155797 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 301-13 chr2 158934697 158934896 + 1.83333 NA Intergenic Intergenic -33838 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 347-2 chr10 113799351 113800003 + 1.83333 NA Intergenic MER5B|DNA|hAT-Charlie -21623 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 176-37 chr6 39088469 39088615 + 1.83333 NA non-coding (NR_136562, exon 14 of 14) non-coding (NR_136562, exon 14 of 14) 14228 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 233.667-9 chr12 127669843 127670077 + 1.83333 NA Intergenic Intergenic -14372 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 288.833-3 chr12 941912 942086 + 1.83333 NA intron (NR_123713, intron 1 of 13) L1M5|LINE|L1 7695 NM_134424 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 188.166 chr10 97027337 97027539 + 1.83333 NA intron (NM_003061, intron 25 of 36) intron (NM_003061, intron 25 of 36) -75318 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 405.5-8 chr8 141918780 141919100 + 1.83333 NA Intergenic L1M6|LINE|L1 -132627 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 551.167-2 chr20 50749051 50749452 + 1.83333 NA intron (NM_032521, intron 2 of 2) AluSc8|SINE|Alu 17671 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 365-5 chr5 4521486 4521796 + 1.83333 NA Intergenic Intergenic -251840 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 168-15 chr13 97109919 97110045 + 1.83333 NA Intergenic Intergenic 69640 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 342.666 chr2 96801152 96801412 + 1.83333 NA intron (NM_020184, intron 5 of 6) intron (NM_020184, intron 5 of 6) 3004 NR_036074 100422928 NR_036074 ENSG00000264157 MIR3127 mir-3127 microRNA 3127 ncRNA 259.167-5 chr2 225090659 225090925 + 1.83333 NA Intergenic Intergenic -48324 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 198.833-27 chr6 53100981 53101101 + 1.83333 NA TTS (NM_012347) TTS (NM_012347) 30068 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 261.5-23 chr2 149098906 149099104 + 1.83333 NA intron (NM_001317004, intron 1 of 6) intron (NM_001317004, intron 1 of 6) -19169 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 437.499 chr7 69658282 69658729 + 1.83333 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 60030 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 252.5-30 chrX 65872045 65872359 + 1.83333 NA Intergenic L1PA11|LINE|L1 -146668 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 510.166-2 chr9 124711796 124712201 + 1.83333 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) 18288 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 387.666-2 chr9 32572152 32572703 + 1.83333 NA intron (NM_182739, intron 1 of 2) intron (NM_182739, intron 1 of 2) 732 NM_182739 4712 Hs.493668 NM_002493 ENSG00000165264 NDUFB6 B17|CI NADH:ubiquinone oxidoreductase subunit B6 protein-coding 242.333-21 chr5 33369565 33369833 + 1.83333 NA Intergenic Intergenic -70997 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 281-5 chr11 58577512 58577789 + 1.83333 NA intron (NM_001143995, intron 1 of 8) intron (NM_001143995, intron 1 of 8) 589 NM_001307951 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 196-14 chr17 48075848 48075992 + 1.83333 NA intron (NM_006807, intron 3 of 4) intron (NM_006807, intron 3 of 4) 25266 NM_006807 10951 Hs.77254 NM_006807 ENSG00000108468 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox 1 protein-coding 309-18 chr4 81437371 81437641 + 1.83333 NA intron (NM_152545, intron 10 of 13) intron (NM_152545, intron 10 of 13) 34401 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 208.5-44 chr8 17118616 17118814 + 1.83333 NA exon (NM_181723, exon 14 of 15) exon (NM_181723, exon 14 of 15) -37767 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 623.833-2 chr19 4471690 4472303 + 1.83333 NA promoter-TSS (NM_032631) promoter-TSS (NM_032631) -301 NM_032631 84717 Hs.43071 NM_032631 ENSG00000167674 HDGFL2 HDGF-2|HDGF2|HDGFRP2|HRP-2|HRP2 HDGF like 2 protein-coding 679.167 chr7 24575929 24576941 + 1.83333 NA intron (NM_001303037, intron 1 of 11) intron (NM_001303037, intron 1 of 11) 2983 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 616.5 chr12 56645544 56646362 + 1.83333 NA promoter-TSS (NR_002737) promoter-TSS (NR_002737) 31 NM_001686 506 Hs.406510 NM_001686 ENSG00000110955 ATP5F1B ATP5B|ATPMB|ATPSB|HEL-S-271 ATP synthase F1 subunit beta protein-coding 345.166-3 chr3 121449171 121449457 + 1.83333 NA intron (NM_199420, intron 26 of 29) intron (NM_199420, intron 26 of 29) 96674 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 168-51 chr8 120727547 120727825 + 1.83333 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -33567 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 469.667-7 chr6 74409228 74409929 + 1.83333 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 340127 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 306.333-10 chr8 129036737 129036926 + 1.83333 NA Intergenic L1MC2|LINE|L1 -70830 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 726-2 chr8 100722070 100723114 + 1.83333 NA promoter-TSS (NM_002568) promoter-TSS (NM_002568) -504 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 345-13 chr20 49888417 49888735 + 1.83333 NA non-coding (NR_048540, exon 12 of 12) non-coding (NR_048540, exon 12 of 12) 24717 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 301.166-6 chr18 1328162 1328398 + 1.83333 NA intron (NR_023926, intron 2 of 5) intron (NR_023926, intron 2 of 5) 31349 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 774.334 chr1 48916077 48916971 + 1.83333 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -139555 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 426.334-4 chr6 169706166 169706566 + 1.83333 NA TTS (NM_001317342) TTS (NM_001317342) 4240 NM_001317342 387263 Hs.591375 NM_001029863 ENSG00000185127 C6orf120 - chromosome 6 open reading frame 120 protein-coding 378.833-4 chr17 73156153 73156426 + 1.83333 NA Intergenic Intergenic -8721 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 409.499 chr2 20326402 20326692 + 1.83333 NA intron (NM_001352929, intron 2 of 20) intron (NM_001352929, intron 2 of 20) 839 NM_001282790 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 380.333-9 chr6 161971185 161971521 + 1.83333 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 500376 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 670.834-2 chr22 39534490 39535260 + 1.83333 NA Intergenic CpG -2127 NR_130151 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 239.667-37 chr5 153496882 153497174 + 1.83333 NA intron (NM_001258019, intron 2 of 14) intron (NM_001258019, intron 2 of 14) 4856 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 179-42 chr7 85132169 85132275 + 1.83333 NA Intergenic Intergenic -10291 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 298.833 chr1 44165540 44165805 + 1.83333 NA Intergenic AluY|SINE|Alu -24041 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 341.5-14 chr3 124479116 124479482 + 1.83333 NA intron (NM_001024660, intron 27 of 59) intron (NM_001024660, intron 27 of 59) 104967 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 403.666 chr11 76212670 76212911 + 1.83333 NA Intergenic Intergenic -6288 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 399.834 chr16 31460932 31461262 + 1.83333 NA intron (NM_001288767, intron 3 of 7) intron (NM_001288767, intron 3 of 7) 2101 NM_001105247 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 223.166 chr1 37779990 37780286 + 1.83333 NA Intergenic Intergenic -13964 NM_001031740 149175 Hs.534562 NM_152496 ENSG00000185090 MANEAL - mannosidase endo-alpha like protein-coding 414.667-8 chr5 158716795 158717145 + 1.83333 NA intron (NM_001324107, intron 11 of 15) intron (NM_001324107, intron 11 of 15) -307197 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 349-3 chr10 32361994 32362193 + 1.83333 NA intron (NR_104163, intron 1 of 1) MER41A|LTR|ERV1 14729 NR_104163 102031319 Hs.128132 NR_104163 ENSG00000229327 LOC102031319 - uncharacterized LOC102031319 ncRNA 524.667-5 chr19 11528902 11529410 + 1.83333 NA promoter-TSS (NM_016581) promoter-TSS (NM_016581) -22 NM_001142464 51295 Hs.515146 NM_016581 ENSG00000130159 ECSIT SITPEC ECSIT signalling integrator protein-coding 401.667-7 chr17 75426116 75426546 + 1.83333 NA Intergenic Intergenic 20262 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 346.833-8 chr6 121966719 121967111 + 1.83333 NA Intergenic Intergenic -432636 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 222.167-6 chr11 119338152 119338550 + 1.83333 NA TTS (NM_001278431) TTS (NM_001278431) 2532 NM_001278431 114902 Hs.632102 NM_015645 ENSG00000223953 C1QTNF5 CTRP5|MFRP C1q and TNF related 5 protein-coding 247-20 chr18 71315825 71316078 + 1.83333 NA Intergenic L1MDa|LINE|L1 263005 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 170.166-2 chr17 54513008 54513216 + 1.83333 NA Intergenic Intergenic -387579 NM_001321175 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 548.999 chr1 43621051 43621440 + 1.83333 NA intron (NM_001329137, intron 34 of 34) intron (NM_001329137, intron 34 of 34) -28904 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 464.667-8 chr7 88849117 88849485 + 1.83333 NA intron (NM_181646, intron 1 of 3) Plat_L3|LINE|CR1 -53564 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 371 chr1 160830523 160830761 + 1.83333 NA 3' UTR (NM_016382, exon 9 of 9) 3' UTR (NM_016382, exon 9 of 9) 32245 NM_001166663 51744 Hs.157872 NM_016382 ENSG00000122223 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule protein-coding 319.334-8 chr3 8132309 8132715 + 1.83333 NA Intergenic Intergenic -116205 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 675.333-2 chr22 22787500 22788750 + 1.83333 NA Intergenic Intergenic -34651 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 393.167-2 chr10 112419580 112419925 + 1.83333 NA intron (NM_203379, intron 14 of 20) intron (NM_203379, intron 14 of 20) 27162 NM_022494 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 637 chr17 16535670 16536344 + 1.83333 NA Intergenic CpG 33197 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 264.333-19 chr22 24878905 24879062 + 1.83333 NA intron (NM_001098498, intron 13 of 23) MLT1K|LTR|ERVL-MaLR 67712 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 303.5-9 chr5 31562968 31563224 + 1.83333 NA Intergenic Intergenic 30795 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 188.833-28 chr3 160491795 160492257 + 1.83333 NA Intergenic Intergenic -6279 NR_148403 100174949 NR_148401 ENSG00000248710 TRIM59-IFT80 IFT80-L TRIM59-IFT80 protein ncRNA 225.833-28 chr8 101129877 101130040 + 1.83333 NA Intergenic MLT1H|LTR|ERVL-MaLR 75715 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 333.501-3 chr6 152643212 152643566 + 1.83333 NA Intergenic LTR33B|LTR|ERVL -6027 NM_182961 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 243.166-4 chr18 66809741 66809946 + 1.83333 NA Intergenic Intergenic -205753 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 786.666 chr10 89793429 89794175 + 1.83333 NA Intergenic MER5B|DNA|hAT-Charlie -35691 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 356.499 chr20 55415496 55415745 + 1.83333 NA Intergenic Intergenic -7423 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 519.332 chr17 49880416 49880917 + 1.83333 NA Intergenic CpG -32649 NM_001077505 255061 Hs.652130 NM_170685 ENSG00000176358 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 protein-coding 249-8 chr14 24930271 24930468 + 1.83333 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 118631 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 299.5-22 chr8 95127561 95127828 + 1.83333 NA Intergenic L1MC4|LINE|L1 -6091 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 202.166 chr1 151410886 151411119 + 1.83333 NA intron (NM_001194938, intron 11 of 17) L2a|LINE|L2 11429 NM_002796 5692 Hs.89545 NM_002796 ENSG00000159377 PSMB4 HN3|HsN3|PRAAS3|PROS-26|PROS26 proteasome subunit beta 4 protein-coding 176.166-2 chr11 105271341 105271448 + 1.83333 NA Intergenic L1MC1|LINE|L1 -131625 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 291.333-15 chr4 187601088 187601286 + 1.83333 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) 71454 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 269-2 chr1 199539422 199539603 + 1.83333 NA Intergenic L1PA16|LINE|L1 390914 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 326.5-8 chr19 27980822 27981069 + 1.83333 NA intron (NR_146734, intron 6 of 7) intron (NR_146734, intron 6 of 7) -187005 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 391.333 chr1 32400675 32401269 + 1.83333 NA Intergenic Intergenic -6531 NM_001300958 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 396.666-6 chr5 61010722 61010990 + 1.83333 NA intron (NM_174889, intron 1 of 3) MLT1J|LTR|ERVL-MaLR 65651 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 379.333-9 chr3 189564063 189564388 + 1.83333 NA Intergenic Intergenic -32521 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 210.166 chr2 155435107 155435313 + 1.83333 NA Intergenic L1ME1|LINE|L1 736515 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 215.333-46 chr8 80886501 80886642 + 1.83333 NA Intergenic LTR33A_|LTR|ERVL -11790 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 238.333-9 chr11 79489089 79489225 + 1.83333 NA Intergenic Intergenic -48127 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 264.5-5 chr13 58902173 58902442 + 1.83333 NA Intergenic Intergenic -669190 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 592.666 chr1 220113086 220113524 + 1.83333 NA intron (NM_018060, intron 11 of 22) intron (NM_018060, intron 11 of 22) 4657 NR_029628 406997 NR_029628 ENSG00000207590 MIR215 MIRN215|miRNA215|mir-215 microRNA 215 ncRNA 285-2 chr1 167174097 167174366 + 1.83333 NA Intergenic A-rich|Low_complexity|Low_complexity 21574 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 229.5-20 chr2 232844835 232845024 + 1.83333 NA intron (NR_103492, intron 24 of 26) intron (NR_103492, intron 24 of 26) -24085 NM_001346122 389084 Hs.657509 NM_206895 ENSG00000182600 SNORC ASCL830|C2orf82|UNQ830 secondary ossification center associated regulator of chondrocyte maturation protein-coding 390.5-12 chrX 129605632 129605945 + 1.83333 NA Intergenic Intergenic 49168 NM_017413 8862 Hs.303084 NM_017413 ENSG00000171388 APLN APEL|XNPEP2 apelin protein-coding 1219.83-4 chr3 376868 377772 + 1.83333 NA intron (NM_001253388, intron 13 of 24) intron (NM_001253388, intron 13 of 24) 8475 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 232.5-21 chr3 154364427 154364901 + 1.83333 NA intron (NM_001038705, intron 3 of 3) MSTC-int|LTR|ERVL-MaLR -40167 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 279.5-4 chr10 76871762 76872001 + 1.83333 NA 3' UTR (NM_001014797, exon 29 of 29) 3' UTR (NM_001014797, exon 29 of 29) -16163 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 378.667-6 chr2 63031773 63032177 + 1.83333 NA intron (NM_001142615, intron 19 of 22) MamTip1|DNA|hAT-Tip100 15736 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 413.5-7 chr8 86486163 86486538 + 1.83333 NA intron (NM_016033, intron 4 of 9) intron (NM_016033, intron 4 of 9) 22336 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 351.999-2 chr5 31825624 31825966 + 1.83333 NA intron (NM_178140, intron 2 of 24) MIRb|SINE|MIR 110364 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 371.5-7 chr2 179219142 179219434 + 1.83333 NA intron (NM_178123, intron 1 of 17) intron (NM_178123, intron 1 of 17) 45544 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 226.666-9 chr8 70995160 70995347 + 1.83333 NA Intergenic Intergenic 325914 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 324.501-3 chr3 129725529 129725874 + 1.83333 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) -1588 NM_001349274 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 532.5-3 chr3 113844721 113845057 + 1.83333 NA intron (NM_017577, intron 2 of 17) intron (NM_017577, intron 2 of 17) 6101 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 348.499-2 chr9 35813634 35813858 + 1.83333 NA exon (NM_032593, exon 2 of 5) exon (NM_032593, exon 2 of 5) 1296 NM_032593 84681 Hs.70573 NM_032593 ENSG00000137133 HINT2 HIT-17 histidine triad nucleotide binding protein 2 protein-coding 573-4 chr3 191135989 191136526 + 1.83333 NA Intergenic Intergenic -62984 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 318.333-8 chr5 1161247 1161650 + 1.83333 NA Intergenic Intergenic 17157 NR_109911 101928857 Hs.593732 NR_109911 ENSG00000249201 CTD-3080P12.3 - uncharacterized LOC101928857 ncRNA 258.5-15 chr15 93969983 93970204 + 1.83333 NA intron (NR_120322, intron 3 of 3) L2a|LINE|L2 69392 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 455.333-5 chr2 207461183 207461514 + 1.83333 NA Intergenic Intergenic -68614 NR_163946 401.666-4 chr3 178481494 178481780 + 1.83333 NA Intergenic Intergenic -54799 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 403.334-5 chr6 34196171 34196603 + 1.83333 NA Intergenic CpG -40486 NM_001319079 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 295.667-5 chr13 105969356 105969649 + 1.83333 NA Intergenic Intergenic 262672 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 295.999-2 chr7 133053600 133053791 + 1.83333 NA intron (NR_133671, intron 2 of 10) intron (NR_133671, intron 2 of 10) -18780 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 189-33 chr3 101686745 101686854 + 1.83333 NA promoter-TSS (NM_000986) promoter-TSS (NM_000986) -81 NM_000986 6152 Hs.477028 NM_000986 ENSG00000114391 RPL24 HEL-S-310|L24 ribosomal protein L24 protein-coding 362.666-2 chr5 139690169 139690489 + 1.83333 NA Intergenic Intergenic 14886 NM_001317209 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 394.001-2 chr10 23041594 23042026 + 1.83333 NA Intergenic Intergenic -53769 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 247.833-13 chr2 192201271 192201577 + 1.83333 NA Intergenic Intergenic -6491 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 409.334 chr11 107434759 107435214 + 1.83333 NA intron (NM_152434, intron 6 of 17) intron (NM_152434, intron 6 of 17) 22860 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 344.499 chr7 130832939 130833128 + 1.83333 NA Intergenic AluSx|SINE|Alu 43777 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 422.499-2 chr11 90802774 90803014 + 1.83333 NA intron (NR_104190, intron 4 of 6) MER5B|DNA|hAT-Charlie 66308 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 351.833-10 chr4 66169112 66169820 + 1.83333 NA Intergenic Intergenic -107358 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 502.332 chr6 168981892 168982429 + 1.83333 NA Intergenic L1M2|LINE|L1 -17778 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 361.666 chr12 111487001 111487220 + 1.83333 NA intron (NR_132311, intron 15 of 23) AluSx1|SINE|Alu 52248 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 388.333-4 chr14 53939406 53939724 + 1.83333 NA Intergenic Intergenic 8919 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 321.833-7 chr16 81526396 81526905 + 1.83333 NA intron (NM_030629, intron 1 of 20) Charlie4a|DNA|hAT-Charlie -7252 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 313.5-7 chr15 25501567 25502032 + 1.83333 NA Intergenic Intergenic -62743 NM_000462 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 287.333-21 chr8 125686451 125686699 + 1.83333 NA Intergenic Intergenic 254366 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 195.667-17 chr16 27109634 27109927 + 1.83333 NA Intergenic CpG 42853 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 314.667-7 chr19 49602203 49602442 + 1.83333 NA intron (NM_020719, intron 6 of 13) intron (NM_020719, intron 6 of 13) 11140 NM_020719 57479 Hs.590971 NM_020719 ENSG00000126464 PRR12 KIAA1205 proline rich 12 protein-coding 424.833-6 chr9 122463398 122463877 + 1.83333 NA Intergenic L1PB1|LINE|L1 14289 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 285.5-12 chr18 3788158 3788435 + 1.83333 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 57062 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 332.166-4 chr15 58735912 58736138 + 1.83333 NA intron (NM_001320570, intron 1 of 14) intron (NM_001320570, intron 1 of 14) 13682 NM_001320570 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 219.833-3 chr11 12668666 12668889 + 1.83333 NA Intergenic L2b|LINE|L2 -5644 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 610.334 chr4 123661296 123661914 + 1.83333 NA intron (NR_027105, intron 2 of 5) L1MC5|LINE|L1 11614 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 368.167-6 chr5 23787851 23788151 + 1.83333 NA Intergenic Intergenic -163347 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 485.833-2 chr5 49657298 49657781 + 1.83333 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 783749 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 471.5-5 chr4 115042742 115043223 + 1.83333 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 70638 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 197.166-2 chr12 29203228 29203464 + 1.83333 NA intron (NM_001271783, intron 1 of 11) intron (NM_001271783, intron 1 of 11) -20320 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 552-5 chr7 146089846 146090532 + 1.83333 NA Intergenic Intergenic -684082 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 367-19 chr3 109994924 109995149 + 1.83333 NA Intergenic AluSz|SINE|Alu 392208 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 626.666-2 chr2 133561130 133561855 + 1.83333 NA intron (NM_207481, intron 1 of 17) intron (NM_207481, intron 1 of 17) 6971 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 253.333-33 chr6 141519348 141519812 + 1.83333 NA Intergenic Intergenic 569219 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 226.666-6 chr3 194144475 194144638 + 1.83333 NA Intergenic AluJo|SINE|Alu 8408 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 466.166-3 chr4 70168973 70169350 + 1.83333 NA Intergenic Intergenic 14924 NM_214711 401137 Hs.518795 NM_214711 ENSG00000187533 PRR27 C4orf40 proline rich 27 protein-coding 509.999-2 chr3 186567374 186567837 + 1.83333 NA promoter-TSS (NM_018138) promoter-TSS (NM_018138) -266 NM_018138 55171 Hs.518469 NM_018138 ENSG00000113838 TBCCD1 - TBCC domain containing 1 protein-coding 284 chr1 41471142 41471340 + 1.83333 NA Intergenic AluSx3|SINE|Alu 13442 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 226.833-4 chr10 19842755 19842899 + 1.83333 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 26395 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 220.5 chr1 40775145 40775392 + 1.83333 NA Intergenic L2c|LINE|L2 -8519 NM_004700 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 259-29 chr4 11954333 11954513 + 1.83333 NA Intergenic Intergenic 171245 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 247.333-22 chr7 115356308 115356568 + 1.83333 NA Intergenic Intergenic -125083 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 390.834 chr1 84658967 84659500 + 1.83333 NA intron (NM_001166417, intron 9 of 14) intron (NM_001166417, intron 9 of 14) -24213 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 254.333-18 chr18 9780356 9780561 + 1.83333 NA intron (NM_006868, intron 2 of 6) L1ME4a|LINE|L1 72157 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 304.667-21 chr8 86135505 86135785 + 1.83333 NA intron (NM_152565, intron 2 of 7) intron (NM_152565, intron 2 of 7) 36735 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 477-3 chr11 13152888 13153371 + 1.83333 NA Intergenic Intergenic -123523 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 253-21 chr3 128790166 128790428 + 1.83333 NA intron (NM_004637, intron 1 of 5) intron (NM_004637, intron 1 of 5) -56511 NR_162138 113219457 NR_162138 MIR12124 - microRNA 12124 ncRNA 205.166 chr1 15338231 15338456 + 1.83333 NA intron (NR_148918, intron 1 of 1) MLT1D|LTR|ERVL-MaLR 5540 NR_148918 101927417 Hs.715313 NR_148918 ENSG00000233485 LOC101927417 - uncharacterized LOC101927417 ncRNA 213.166-7 chr9 73078334 73078597 + 1.83333 NA Intergenic LTR37A|LTR|ERV1 -73400 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 411.166-5 chr4 117070935 117071211 + 1.83333 NA Intergenic L1MEd|LINE|L1 14503 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 320.167-11 chr6 20056515 20056796 + 1.83333 NA Intergenic Intergenic 155814 NR_073465 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 278-13 chr17 57066950 57067178 + 1.83333 NA Intergenic Intergenic -18182 NM_003488 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 226.5-12 chr13 22662323 22662472 + 1.83333 NA Intergenic MLT1C|LTR|ERVL-MaLR 235784 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 469.833-3 chr2 189153686 189153952 + 1.83333 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) -20708 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 302-15 chr3 111541790 111542158 + 1.83333 NA promoter-TSS (NM_198196) promoter-TSS (NM_198196) -223 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 1095.17 chr10 96513521 96514734 + 1.83333 NA promoter-TSS (NM_012465) promoter-TSS (NM_012465) -201 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 215-32 chr4 109548816 109549062 + 1.83333 NA Intergenic ERVL-E-int|LTR|ERVL -11307 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 279.5-5 chr13 18211744 18212106 + 1.83333 NA intron (NR_027278, intron 1 of 7) HSATI|Satellite|Satellite 16628 NR_027278 26080 Hs.448583 NR_027278 ENSG00000279516 FAM230C LINC00281|NCRNA00281 family with sequence similarity 230 member C ncRNA 249.167-26 chr7 64237759 64237972 + 1.83333 NA intron (NM_153363, intron 1 of 4) MER21C|LTR|ERVL 9391 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 311.5-21 chr7 7421669 7421857 + 1.83333 NA intron (NM_001037763, intron 25 of 34) intron (NM_001037763, intron 25 of 34) 114110 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 316.167-5 chr13 58056111 58056311 + 1.83333 NA Intergenic Intergenic -109616 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 406.833-6 chr8 72564812 72565080 + 1.83333 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 27721 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 192-24 chr3 39695527 39695661 + 1.83333 NA Intergenic Intergenic -113320 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 513.834-2 chr3 49171218 49171790 + 1.83333 NA promoter-TSS (NM_173546) promoter-TSS (NM_173546) -94 NM_173546 200942 Hs.13781 NM_173546 ENSG00000185909 KLHDC8B CHL kelch domain containing 8B protein-coding 244.333-23 chr4 39893675 39893832 + 1.83333 NA intron (NM_001100399, intron 16 of 32) MIRc|SINE|MIR 84158 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 269.833-6 chr2 68908494 68908722 + 1.83333 NA Intergenic Intergenic -37211 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 821 chr1 34681482 34682365 + 1.83333 NA Intergenic L1MB7|LINE|L1 -12229 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 267.333-12 chr2 125789153 125789567 + 1.83333 NA Intergenic L1MB1|LINE|L1 328625 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 454.999 chr10 98664613 98665068 + 1.83333 NA intron (NM_021828, intron 6 of 11) L1PA16|LINE|L1 -217877 NM_001311345 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 453.999 chr12 49201883 49202207 + 1.83333 NA Intergenic Intergenic -12721 NM_001270400 7846 Hs.654422 NM_006009 ENSG00000167552 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin alpha 1a protein-coding 697.499 chr2 96265975 96266585 + 1.83333 NA promoter-TSS (NM_004804) promoter-TSS (NM_004804) 55 NM_004804 9391 Hs.12109 NM_004804 ENSG00000144021 CIAO1 CIA1|WDR39 cytosolic iron-sulfur assembly component 1 protein-coding 181.5-8 chr11 38136186 38136299 + 1.83333 NA Intergenic Intergenic 197641 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 276.834-2 chr13 46764010 46764279 + 1.83333 NA Intergenic Intergenic 33017 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 226.5-6 chr1 242506173 242506346 + 1.83333 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) 18437 NM_152666 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 206-28 chr4 46300755 46300902 + 1.83333 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 88551 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 539.666 chr1 32520155 32520861 + 1.83333 NA Intergenic LTR41C|LTR|ERVL -18919 NR_111980 653121 Hs.546479 NM_144621 ENSG00000160062 ZBTB8A BOZF1|ZBTB8|ZNF916A zinc finger and BTB domain containing 8A protein-coding 183.666 chr1 205618161 205618396 + 1.83333 NA TTS (NM_021795) TTS (NM_021795) 14594 NM_001973 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 170.167-40 chr8 54897055 54897237 + 1.83333 NA Intergenic Charlie13a|DNA|hAT-Charlie -204882 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 226.5-19 chr16 66947368 66947575 + 1.83333 NA Intergenic Intergenic 11955 NM_001365407 8824 Hs.282975 NM_003869 ENSG00000172831 CES2 CE-2|CES2A1|PCE-2|iCE carboxylesterase 2 protein-coding 167.666-8 chr5 127862561 127862754 + 1.83333 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 159268 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 184.5-19 chr15 65784909 65785025 + 1.83333 NA intron (NM_005848, intron 1 of 31) AluSz|SINE|Alu 7326 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 414.166-3 chr16 73196745 73197208 + 1.83333 NA Intergenic Intergenic -52529 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 511.666-2 chr17 67378295 67378830 + 1.83333 NA intron (NM_181671, intron 1 of 9) CpG 1281 NM_181671 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein cytoplasmic 1 protein-coding 175.5-18 chr13 99510122 99510266 + 1.83333 NA intron (NM_004800, intron 1 of 16) MSTA-int|LTR|ERVL-MaLR 8722 NM_004800 9375 Hs.607896 NM_004800 ENSG00000125304 TM9SF2 P76 transmembrane 9 superfamily member 2 protein-coding 194.166-2 chr17 62819985 62820140 + 1.83333 NA intron (NR_135634, intron 1 of 1) intron (NR_135634, intron 1 of 1) 11560 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 340.833-6 chr22 23290501 23291069 + 1.83333 NA intron (NM_004327, intron 14 of 22) intron (NM_004327, intron 14 of 22) 28018 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 309.333-6 chr10 95201863 95202178 + 1.83333 NA exon (NM_207321, exon 3 of 11) exon (NM_207321, exon 3 of 11) 7820 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 255.833-2 chr10 59241973 59242176 + 1.83333 NA intron (NM_001143774, intron 4 of 4) L1MDa|LINE|L1 64607 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 323.833-7 chr22 34727618 34727870 + 1.83333 NA Intergenic L1MA10|LINE|L1 270172 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 333.833-3 chr14 47783914 47784144 + 1.83333 NA intron (NR_039996, intron 2 of 2) intron (NR_039996, intron 2 of 2) 10985 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 322.333-10 chr2 170973172 170973675 + 1.83333 NA Intergenic CpG 44170 NM_015530 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 277.5-13 chr3 102375919 102376175 + 1.83333 NA Intergenic Intergenic -58968 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 312.333-20 chr5 64292633 64293004 + 1.83333 NA intron (NM_001113561, intron 5 of 7) L1PA10|LINE|L1 126975 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 274.833-4 chr12 2698336 2698544 + 1.83333 NA TTS (NM_001129827) TTS (NM_001129827) -7283 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 252.833-2 chr1 75298277 75298430 + 1.83333 NA intron (NM_001320283, intron 3 of 21) intron (NM_001320283, intron 3 of 21) 163965 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 418.666-3 chr4 165536414 165537182 + 1.83333 NA Intergenic Intergenic -147841 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 397.167-2 chr2 246620 246894 + 1.83333 NA intron (NM_001282682, intron 4 of 10) intron (NM_001282682, intron 4 of 10) 9583 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 369.5-12 chr2 188722150 188722426 + 1.83333 NA Intergenic L2c|LINE|L2 67835 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 233.333-23 chr4 179061276 179061445 + 1.83333 NA Intergenic L1MA7|LINE|L1 -1153424 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 190.333-22 chr18 66663282 66663498 + 1.83333 NA Intergenic Intergenic -59300 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 286.333-2 chr10 101411604 101411825 + 1.83333 NA intron (NM_003939, intron 1 of 13) L1MEc|LINE|L1 57549 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 247.666-5 chr17 59816236 59816408 + 1.83333 NA intron (NM_001329400, intron 7 of 9) intron (NM_001329400, intron 7 of 9) -24944 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 514.999 chr4 187182885 187183521 + 1.83333 NA Intergenic Intergenic -18783 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 466.499 chr4 168707679 168708077 + 1.83333 NA intron (NM_001166108, intron 8 of 21) intron (NM_001166108, intron 8 of 21) 76300 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 322.666-8 chr4 44494387 44494602 + 1.83333 NA Intergenic L1M4|LINE|L1 -45685 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 370.167-3 chr16 78257487 78257815 + 1.83333 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 157997 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 242-22 chr22 38760141 38760279 + 1.83333 NA Intergenic L2c|LINE|L2 -4212 NM_015374 25777 Hs.517622 NM_015374 ENSG00000100242 SUN2 UNC84B Sad1 and UNC84 domain containing 2 protein-coding 219.833-27 chr8 78229173 78229321 + 1.83333 NA Intergenic Intergenic -287093 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 298.666-9 chr8 137627143 137627500 + 1.83333 NA Intergenic Intergenic -213733 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 278.333-4 chr10 28123069 28123334 + 1.83333 NA intron (NR_134518, intron 7 of 16) intron (NR_134518, intron 7 of 16) -49823 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 357-3 chr12 12355519 12355957 + 1.83333 NA non-coding (NR_024061, exon 2 of 2) non-coding (NR_024061, exon 2 of 2) 1329 NR_024061 503693 Hs.67553 NR_024061 ENSG00000205791 LOH12CR2 LOH2CR12 loss of heterozygosity, 12, chromosomal region 2 ncRNA 260.667-44 chr7 28944257 28944510 + 1.83333 NA Intergenic Intergenic 13947 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 366.666-5 chrX 88397783 88398112 + 1.83333 NA Intergenic Intergenic -349278 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 351.833-8 chr3 146087121 146087329 + 1.83333 NA intron (NM_182943, intron 9 of 19) intron (NM_182943, intron 9 of 19) -18040 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 340.833-13 chr7 140598277 140598531 + 1.83333 NA intron (NM_001318052, intron 2 of 18) L1MEg|LINE|L1 4138 NR_134477 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 185-44 chr9 68887787 68887940 + 1.83333 NA intron (NM_003558, intron 6 of 15) L2c|LINE|L2 87978 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 308.333 chr1 112394256 112394637 + 1.83333 NA Intergenic Intergenic -1768 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 288.166-2 chr11 65507482 65507682 + 1.83333 NA promoter-TSS (NR_145459) promoter-TSS (NR_145459) -150 NR_145459 109136579 Hs.621695 NR_145459 TALAM1 - MALAT1 antisense transcript ncRNA 356.5-5 chr19 2748934 2749456 + 1.83333 NA Intergenic Intergenic -9119 NM_213568 29985 Hs.515046 NM_144564 ENSG00000141873 SLC39A3 ZIP-3|ZIP3 solute carrier family 39 member 3 protein-coding 438.333-5 chr12 77684857 77685399 + 1.83333 NA Intergenic Intergenic -145766 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 465-4 chr5 60161480 60161931 + 1.83333 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) 210958 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 253.166-4 chr12 70186862 70187155 + 1.83333 NA Intergenic Intergenic -56022 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 243.166-9 chr8 106708967 106709191 + 1.83333 NA intron (NM_181354, intron 7 of 13) L1ME4a|LINE|L1 -17028 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 504.999 chr1 88501235 88501678 + 1.83333 NA Intergenic Intergenic -182688 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 262.666 chr16 72409752 72409985 + 1.83333 NA intron (NR_126330, intron 7 of 13) L2a|LINE|L2 -237418 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 361.667-11 chr2 214342785 214343129 + 1.83333 NA intron (NR_047660, intron 14 of 14) HAL1ME|LINE|L1 -68097 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 303.499 chr18 75958938 75959103 + 1.83333 NA Intergenic MLT2D|LTR|ERVL -163978 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 510 chr10 62610598 62611213 + 1.83333 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 90457 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 392-9 chr5 64563530 64564044 + 1.83333 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) -11863 NM_001271890 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 378.666-5 chr18 4832195 4832601 + 1.83333 NA Intergenic Tigger19b|DNA|TcMar-Tigger -248784 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 521.334 chr1 170881862 170882663 + 1.83333 NA Intergenic Intergenic -53209 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 450.666-6 chr2 197707754 197708524 + 1.83333 NA 3' UTR (NM_138395, exon 1 of 1) 3' UTR (NM_138395, exon 1 of 1) 2770 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 374.5-9 chr5 59769097 59769458 + 1.83333 NA promoter-TSS (NM_001364601) promoter-TSS (NM_001364601) -429 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 488.167 chr11 111585207 111585684 + 1.83333 NA Intergenic MIR1_Amn|SINE|MIR -17004 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 360.333-7 chr4 2142949 2143174 + 1.83333 NA intron (NM_181808, intron 16 of 25) L1MDa|LINE|L1 83734 NM_178557 339983 Hs.318529 NM_178557 ENSG00000185818 NAT8L CML3|NACED|NAT8-LIKE N-acetyltransferase 8 like protein-coding 470.167-4 chr2 103711940 103712342 + 1.83333 NA Intergenic Intergenic 696191 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 251-25 chr4 48001987 48002149 + 1.83333 NA intron (NM_000087, intron 2 of 10) L1MEf|LINE|L1 10877 NM_000087 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 544.5-5 chr16 85718653 85719269 + 1.83333 NA intron (NR_161452, intron 2 of 4) intron (NR_161452, intron 2 of 4) 22739 NR_031731 100302261 NR_031731 ENSG00000283416 MIR1910 MIRN1910|hsa-mir-1910|mir-1910 microRNA 1910 ncRNA 302.833-3 chr11 5226216 5226414 + 1.83333 NA intron (NM_000518, intron 2 of 2) intron (NM_000518, intron 2 of 2) 756 NM_000518 3043 Hs.523443 NM_000518 ENSG00000244734 HBB CD113t-C|ECYT6|beta-globin hemoglobin subunit beta protein-coding 166.333-8 chr1 199969624 199969714 + 1.83333 NA Intergenic Intergenic -58041 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 339.5-11 chr3 117720200 117720485 + 1.83333 NA Intergenic MIRb|SINE|MIR -29417 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 351.333-7 chr2 122817851 122818088 + 1.83333 NA Intergenic Intergenic 255512 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 378-21 chr7 55411849 55412159 + 1.83333 NA exon (NM_018697, exon 6 of 9) exon (NM_018697, exon 6 of 9) 46556 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 475-4 chr6 117556342 117556797 + 1.83333 NA intron (NM_173674, intron 14 of 14) L1PB4|LINE|L1 45942 NM_020399 57120 Hs.191539 NM_020399 ENSG00000047932 GOPC CAL|FIG|GOPC1|PIST|dJ94G16.2 golgi associated PDZ and coiled-coil motif containing protein-coding 505.166-2 chr6 106223057 106223735 + 1.83333 NA intron (NR_104402, intron 4 of 5) intron (NR_104402, intron 4 of 5) 92870 NR_104403 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 401.666 chr2 29085233 29085510 + 1.83333 NA Intergenic Intergenic -10848 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 PCARE C2orf71|RP54 photoreceptor cilium actin regulator protein-coding 314.833-11 chr6 51935817 51936121 + 1.83333 NA intron (NM_138694, intron 36 of 66) L2a|LINE|L2 151644 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 345.5-21 chr8 92075024 92075428 + 1.83333 NA intron (NM_001198632, intron 1 of 11) intron (NM_001198632, intron 1 of 11) -12592 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 232.166-2 chr3 104250562 104250964 + 1.83333 NA Intergenic Intergenic -726647 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 163.833-11 chr14 101948144 101948259 + 1.83333 NA Intergenic CpG -16372 NM_001376 1778 Hs.614080 NM_001376 ENSG00000197102 DYNC1H1 CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein cytoplasmic 1 heavy chain 1 protein-coding 450.833-4 chr7 92448314 92448750 + 1.83333 NA intron (NM_021167, intron 1 of 4) intron (NM_021167, intron 1 of 4) 1050 NR_052016 57798 Hs.21145 NM_021167 ENSG00000157259 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 185.5-20 chr2 13962449 13962659 + 1.83333 NA Intergenic L1MA4|LINE|L1 438404 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 662.832 chr14 64931842 64932450 + 1.83333 NA exon (NM_145165, exon 4 of 4) exon (NM_145165, exon 4 of 4) 10599 NR_046320 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 331.333-8 chr5 59914912 59915134 + 1.83333 NA intron (NM_001165899, intron 3 of 16) L2a|LINE|L2 -21297 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 239.833-6 chr18 53567903 53568162 + 1.83333 NA promoter-TSS (NR_110798) promoter-TSS (NR_110798) -415 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 203.667-42 chr6 123175425 123175633 + 1.83333 NA Intergenic L1MC5a|LINE|L1 179294 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 312.833-8 chr9 29095569 29095815 + 1.83333 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 116607 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 165-3 chr1 215146373 215146489 + 1.83333 NA intron (NM_001017424, intron 3 of 6) intron (NM_001017424, intron 3 of 6) 63694 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 373.333-2 chr10 9336243 9336530 + 1.83333 NA Intergenic MER1A|DNA|hAT-Charlie -40793 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 194.167-14 chr15 90989612 90989738 + 1.83333 NA intron (NM_199413, intron 1 of 13) L1MB8|LINE|L1 4860 NM_001267580 9055 Hs.366401 NM_003981 ENSG00000198901 PRC1 ASE1 protein regulator of cytokinesis 1 protein-coding 227.666-3 chr12 69069596 69069759 + 1.83333 NA Intergenic MIRc|SINE|MIR -106437 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 308.333-3 chr11 43310647 43310853 + 1.83333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -1246 NM_001243747 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 472.166-2 chr4 178014863 178015272 + 1.83333 NA Intergenic L1PA3|LINE|L1 -107131 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 406.833-4 chr15 97952776 97953297 + 1.83333 NA Intergenic AluSz|SINE|Alu -7667 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 403.333-2 chr15 49087143 49087437 + 1.83333 NA Intergenic Intergenic -40844 NM_001193489 9728 Hs.9997 NM_014701 ENSG00000138593 SECISBP2L SBP2L|SLAN SECIS binding protein 2 like protein-coding 618.333-4 chr7 106176493 106177122 + 1.83333 NA Intergenic Intergenic -64231 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 459.167-3 chr1 235104090 235104428 + 1.83333 NA Intergenic CpG 23678 NR_002956 677802 Hs.744743 NR_002956 ENSG00000207181 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 411.166-3 chr16 2223471 2223969 + 1.83333 NA exon (NM_004424, exon 1 of 14) exon (NM_004424, exon 1 of 14) 129 NM_004424 1877 Hs.513268 NM_004424 ENSG00000167967 E4F1 E4F E4F transcription factor 1 protein-coding 291-15 chr2 36371581 36372232 + 1.83333 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 16128 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 223.833-23 chr8 103208060 103208222 + 1.83333 NA intron (NM_001364874, intron 2 of 3) intron (NM_001364874, intron 2 of 3) -36001 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 436.833-5 chr17 79749321 79749761 + 1.83333 NA Intergenic Intergenic 18598 NM_178543 339221 Hs.114084 NM_178543 ENSG00000182156 ENPP7 ALK-SMase|E-NPP 7|NPP-7|NPP7 ectonucleotide pyrophosphatase/phosphodiesterase 7 protein-coding 187.5-34 chr6 49412782 49412988 + 1.83333 NA Intergenic L2c|LINE|L2 50368 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 328.833-3 chr12 41208933 41209143 + 1.83333 NA intron (NM_001164595, intron 3 of 9) (TG)n|Simple_repeat|Simple_repeat 20718 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 490.166-3 chr8 107196918 107197253 + 1.83333 NA Intergenic MLT2B2|LTR|ERVL 139430 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 405.333-3 chr1 247485928 247486286 + 1.83333 NA Intergenic Intergenic -4961 NM_001004698 441932 Hs.591526 NM_001004698 OR2W5 OR2W5P|OST722 olfactory receptor family 2 subfamily W member 5 (gene/pseudogene) protein-coding 198.667-42 chr7 18812839 18813142 + 1.83333 NA intron (NM_058176, intron 16 of 22) L1ME2|LINE|L1 303720 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 364.5-12 chr7 155345099 155345569 + 1.83333 NA Intergenic Intergenic 22599 NR_103545 338436 Hs.521326 NR_103545 ENSG00000204960 BLACE - B cell acute lymphoblastic leukemia expressed ncRNA 404.334-4 chr17 61222332 61222806 + 1.83333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 145135 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 342-12 chr4 78626458 78626806 + 1.83333 NA Intergenic Intergenic -19362 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 389.333-4 chr4 33770252 33770521 + 1.83333 NA Intergenic MER110|LTR|ERV1 269507 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 227-13 chr2 11316122 11316300 + 1.83333 NA intron (NM_001321643, intron 1 of 32) intron (NM_001321643, intron 1 of 32) 28425 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 307.499 chr2 74289088 74289285 + 1.83333 NA intron (NM_133478, intron 7 of 30) Charlie22a|DNA|hAT-Charlie 25839 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 417.166-7 chr8 59921536 59921983 + 1.83333 NA Intergenic Intergenic 359641 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 378.333-8 chr17 62987121 62987371 + 1.83333 NA intron (NM_025185, intron 1 of 25) L1M2c|LINE|L1 21011 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 303.501-2 chr6 53130529 53130799 + 1.83333 NA intron (NM_003643, intron 5 of 5) intron (NM_003643, intron 5 of 5) 18177 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 209.333-28 chr4 124843243 124843468 + 1.83333 NA Intergenic L1MCc|LINE|L1 -130623 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 244.5-25 chr3 138288114 138288294 + 1.83333 NA intron (NM_001282342, intron 17 of 19) intron (NM_001282342, intron 17 of 19) 41647 NM_001349022 347736 Hs.660992 NM_178130 ENSG00000181322 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 184.833-34 chrX 70769580 70769750 + 1.83333 NA intron (NM_001003811, intron 10 of 30) Charlie15a|DNA|hAT-Charlie 76630 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 934.499-2 chr8 65644690 65645457 + 1.83333 NA intron (NM_001145839, intron 1 of 6) CpG 339 NM_014637 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 410.334-5 chrX 23907857 23908583 + 1.83333 NA promoter-TSS (NR_026545) promoter-TSS (NR_026545) 214 NM_152761 254158 Hs.351265 NM_152761 ENSG00000165182 CXorf58 - chromosome X open reading frame 58 protein-coding 373.166 chr1 42950258 42950630 + 1.83333 NA intron (NM_006516, intron 1 of 9) intron (NM_006516, intron 1 of 9) 8424 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 400.666-3 chr4 30718698 30718933 + 1.83333 NA Intergenic Intergenic -1554 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 383.999 chr19 19053932 19054185 + 1.83333 NA intron (NM_001199196, intron 5 of 8) intron (NM_001199196, intron 5 of 8) -9936 NM_001321544 284439 Hs.303669 NM_178526 ENSG00000181035 SLC25A42 MECREN solute carrier family 25 member 42 protein-coding 226-35 chr4 88810783 88810993 + 1.83333 NA intron (NM_014883, intron 7 of 23) MER112|DNA|hAT-Charlie 12473 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 347.333-8 chr18 1314806 1315006 + 1.83333 NA intron (NR_023926, intron 2 of 5) intron (NR_023926, intron 2 of 5) 44723 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 211.667-46 chr8 123306854 123307111 + 1.83333 NA Intergenic L1MB3|LINE|L1 -31441 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 399.334-4 chr20 54123574 54123919 + 1.83333 NA Intergenic Intergenic 50240 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 735.001 chr1 239898117 239899438 + 1.83333 NA intron (NR_046582, intron 1 of 1) intron (NR_046582, intron 1 of 1) 1095 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 356.167-2 chr1 211083452 211083983 + 1.83333 NA intron (NM_002238, intron 4 of 10) intron (NM_002238, intron 4 of 10) 49657 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 340.333-15 chr7 55104953 55105359 + 1.83333 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -4683 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 278.333 chr1 66428649 66428820 + 1.83333 NA Intergenic L1PBa|LINE|L1 74199 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 277.999-2 chr2 70487842 70488024 + 1.83333 NA intron (NM_003236, intron 2 of 5) L1ME4a|LINE|L1 -6293 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 322-12 chr7 103659691 103659905 + 1.83333 NA intron (NM_005045, intron 12 of 64) MIR|SINE|MIR -213591 NM_206885 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 282.833-2 chr10 121901192 121901387 + 1.83333 NA intron (NR_110006, intron 4 of 9) intron (NR_110006, intron 4 of 9) 26742 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 489.834-3 chr4 101540110 101540527 + 1.83333 NA Intergenic Intergenic 192541 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 288.666-13 chr9 28570143 28570488 + 1.83333 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 148990 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 554.666-2 chr4 114383307 114383859 + 1.83333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -214819 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 167.5-19 chr18 78276418 78276530 + 1.83333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -282747 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 410.501-2 chr8 76894170 76894422 + 1.83333 NA Intergenic Intergenic 72554 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 466.333-2 chr2 203004441 203004813 + 1.83333 NA Intergenic L1MCa|LINE|L1 -10252 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 175.333-53 chr7 36966054 36966169 + 1.83333 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 19001 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 465.333-4 chr19 36139580 36139954 + 1.83333 NA promoter-TSS (NM_001302632) promoter-TSS (NM_001302632) -299 NM_001003962 826 Hs.515371 NM_001749 ENSG00000126247 CAPNS1 CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain small subunit 1 protein-coding 550.832 chr19 40348509 40349050 + 1.83333 NA promoter-TSS (NM_001256441) promoter-TSS (NM_001256441) 84 NM_012268 23646 Hs.257008 NM_012268 ENSG00000105223 PLD3 AD19|HU-K4|HUK4|SCA46 phospholipase D family member 3 protein-coding 259.667-11 chr2 81732689 81732958 + 1.83333 NA Intergenic Intergenic -265877 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 228.666-14 chr8 78478350 78478549 + 1.83333 NA Intergenic Intergenic -37891 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 309.333-24 chr9 90235236 90235445 + 1.83333 NA Intergenic L1PREC2|LINE|L1 -193841 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 237.166 chr1 36965806 36965998 + 1.83333 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 68613 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 294.833-8 chr4 72909589 72909841 + 1.83333 NA Intergenic Intergenic 160001 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 243.5-5 chr14 50461900 50462112 + 1.83333 NA intron (NM_198794, intron 13 of 31) intron (NM_198794, intron 13 of 31) -64708 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 248.834-8 chr6 165439904 165440185 + 1.83333 NA intron (NM_006661, intron 6 of 22) intron (NM_006661, intron 6 of 22) -130439 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 315.167-8 chr20 11415488 11415734 + 1.83333 NA Intergenic L1MC3|LINE|L1 -142228 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 300.667-8 chr19 28330894 28331170 + 1.83333 NA Intergenic MIR3|SINE|MIR -275656 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 450.333-3 chr14 61720513 61720841 + 1.83333 NA intron (NM_181054, intron 2 of 13) intron (NM_181054, intron 2 of 13) 23055 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 310.833-2 chr1 247682459 247682759 + 1.83333 NA Intergenic L1MEg|LINE|L1 -9568 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 251 chr10 95922543 95922940 + 1.83333 NA intron (NM_001349008, intron 3 of 34) intron (NM_001349008, intron 3 of 34) 14776 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 444.5-6 chr20 56249463 56249955 + 1.83333 NA exon (NM_019888, exon 1 of 1) exon (NM_019888, exon 1 of 1) 977 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 188.333-20 chr18 11519208 11519501 + 1.83333 NA Intergenic Intergenic 29306 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 314.667-10 chr3 189034313 189034620 + 1.83333 NA Intergenic Intergenic -86827 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 311.834-5 chr20 57694366 57694731 + 1.83333 NA intron (NM_199171, intron 1 of 3) MIRb|SINE|MIR -3862 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 207.833-4 chr11 122197209 122197351 + 1.83333 NA intron (NR_137180, intron 2 of 4) intron (NR_137180, intron 2 of 4) 5829 NR_137181 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 304.166 chr16 2141515 2141875 + 1.83333 NA Intergenic L1M4|LINE|L1 -5566 NR_037467 100500916 NR_037467 ENSG00000264397 MIR3180-5 mir-3180-5 microRNA 3180-5 ncRNA 335.833-9 chr3 194647540 194647949 + 1.83333 NA intron (NM_018385, intron 11 of 13) MIR3|SINE|MIR -14325 NM_001166305 93109 Hs.478729 NM_138399 ENSG00000145014 TMEM44 - transmembrane protein 44 protein-coding 359.666-5 chr19 42468371 42468600 + 1.83333 NA intron (NR_073179, intron 1 of 1) intron (NR_073179, intron 1 of 1) -25539 NM_198477 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 256.666-2 chr18 45626338 45626570 + 1.83333 NA intron (NM_007163, intron 3 of 19) intron (NM_007163, intron 3 of 19) 10978 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 379.333-10 chr6 152858090 152858438 + 1.83333 NA Intergenic Intergenic 107467 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 405.666-3 chr5 180103540 180103964 + 1.83333 NA intron (NM_175062, intron 12 of 13) L1MDa|LINE|L1 -31993 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 448.667-6 chr7 88964933 88965410 + 1.83333 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -169434 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 227.667-14 chr16 2200214 2200432 + 1.83333 NA Intergenic MIRb|SINE|MIR -3718 NM_020764 57524 Hs.643537 NM_020764 ENSG00000167971 CASKIN1 ANKS5A CASK interacting protein 1 protein-coding 203.833-12 chr19 15258260 15258439 + 1.83333 NA intron (NM_001330384, intron 7 of 11) AluSz|SINE|Alu 22102 NM_058243 23476 Hs.187763 NM_014299 ENSG00000141867 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 296.333-20 chr8 121163806 121164210 + 1.83333 NA Intergenic MIRb|SINE|MIR -351962 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 333.667-2 chr15 76866644 76866949 + 1.83333 NA intron (NR_148227, intron 2 of 32) intron (NR_148227, intron 2 of 32) -4852 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 511.666 chr15 34090461 34090816 + 1.83333 NA intron (NM_020154, intron 2 of 4) intron (NM_020154, intron 2 of 4) 11224 NM_020154 56851 Hs.160565 NM_020154 ENSG00000134153 EMC7 C11orf3|C15orf24|HT022|ORF1-FL1 ER membrane protein complex subunit 7 protein-coding 397.001 chr3 5601984 5602456 + 1.83333 NA Intergenic L1PA15|LINE|L1 -351965 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 314.5-7 chr12 45451247 45451475 + 1.83333 NA Intergenic L1MB3|LINE|L1 158671 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 246.167-2 chr1 211321652 211322102 + 1.83333 NA Intergenic AluSq2|SINE|Alu -4738 NM_004619 7188 Hs.523930 NM_004619 ENSG00000082512 TRAF5 MGC:39780|RNF84 TNF receptor associated factor 5 protein-coding 229.5-26 chr3 185700717 185700967 + 1.83333 NA intron (NR_138486, intron 2 of 15) L1ME3G|LINE|L1 -12410 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 422.666-5 chr2 138821830 138822215 + 1.83333 NA Intergenic Tigger13a|DNA|TcMar-Tigger -41632 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 462.166 chr12 42790422 42790839 + 1.83333 NA Intergenic Intergenic 98414 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 278.666-14 chrX 98023598 98023801 + 1.83333 NA Intergenic Intergenic -459164 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 645.334-3 chr3 157203981 157205093 + 1.83333 NA Intergenic Intergenic -43777 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 246.333-13 chr12 15107919 15108193 + 1.83333 NA 3' UTR (NM_001190726, exon 4 of 4) 3' UTR (NM_001190726, exon 4 of 4) -43867 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 407.999-2 chr1 194351428 194351895 + 1.83333 NA Intergenic Intergenic 1046916 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 366.666-4 chr6 85294892 85295322 + 1.83333 NA Intergenic Intergenic 95079 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 288-10 chr14 70922367 70922630 + 1.83333 NA intron (NM_014982, intron 1 of 35) intron (NM_014982, intron 1 of 35) 15039 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 293.833-2 chr1 209364564 209364956 + 1.83333 NA Intergenic Intergenic -7295 NR_146491 101929476 Hs.568721 NR_146491 LINC01698 - long intergenic non-protein coding RNA 1698 ncRNA 480.999 chr17 58755463 58755844 + 1.83333 NA promoter-TSS (NR_048561) promoter-TSS (NR_048561) -201 NM_014906 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 333.333-3 chr12 6532470 6532796 + 1.83333 NA TTS (NM_014865) TTS (NM_014865) -1884 NM_002046 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 333.166-7 chr20 57693136 57693477 + 1.83333 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -2620 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 301-27 chr8 13857282 13857595 + 1.83333 NA Intergenic L2a|LINE|L2 227748 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 377.666-2 chr1 55429053 55429623 + 1.83333 NA Intergenic Intergenic 203697 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 397.166-3 chr7 30821923 30822325 + 1.83333 NA intron (NR_037598, intron 7 of 19) L1MC4|LINE|L1 50707 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 283.166-3 chr7 82989086 82989284 + 1.83333 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 173699 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 529.667-2 chr8 137326081 137326649 + 1.83333 NA Intergenic Intergenic 87223 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 279.333-16 chr3 50627631 50627929 + 1.83333 NA intron (NM_004635, intron 2 of 10) intron (NM_004635, intron 2 of 10) 10629 NM_001243925 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 218-4 chr10 44510998 44511185 + 1.83333 NA Intergenic Intergenic -125994 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 301.667-3 chr10 119968252 119968641 + 1.83333 NA Intergenic Intergenic 9933 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 407.334 chr12 41632924 41633618 + 1.83333 NA Intergenic L1PA16|LINE|L1 -130918 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 196.166-3 chr7 5693749 5693884 + 1.83333 NA intron (NM_207111, intron 13 of 16) intron (NM_207111, intron 13 of 16) -13355 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 446.334 chr1 17046267 17046675 + 1.83333 NA intron (NM_003000, intron 1 of 7) L1ME1|LINE|L1 7699 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 244.167-21 chr4 156088310 156088537 + 1.83333 NA Intergenic L2a|LINE|L2 -134557 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 256-13 chr18 11393980 11394337 + 1.83333 NA Intergenic Intergenic -60320 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 281.666-2 chr2 148604434 148604631 + 1.83333 NA Intergenic Intergenic -40219 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 233.166-3 chr12 90788822 90789121 + 1.83333 NA Intergenic Intergenic -129052 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 167-42 chr8 119257964 119258124 + 1.83333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -11187 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 649.167 chr11 101860620 101861370 + 1.83333 NA Intergenic Intergenic -54015 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 418.5-5 chr6 26659551 26660095 + 1.83333 NA promoter-TSS (NM_001242799) promoter-TSS (NM_001242799) -71 NM_001242798 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 240-41 chr4 82429039 82429604 + 1.83333 NA exon (NM_031372, exon 1 of 8) exon (NM_031372, exon 1 of 8) 904 NR_003249 9987 Hs.527105 NM_005463 ENSG00000152795 HNRNPDL HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1 heterogeneous nuclear ribonucleoprotein D like protein-coding 440.166 chr6 89945021 89945525 + 1.83333 NA intron (NM_021813, intron 7 of 8) L1MB7|LINE|L1 50804 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 434.333-2 chr1 111040998 111041449 + 1.83333 NA Intergenic L1ME3B|LINE|L1 -77279 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 193.167-10 chr14 59310521 59310955 + 1.83333 NA intron (NM_001270520, intron 3 of 24) intron (NM_001270520, intron 3 of 24) 47297 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 200-30 chr4 38601184 38601415 + 1.83333 NA Intergenic Intergenic 37296 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 561.334-2 chr3 46630025 46630570 + 1.83333 NA Intergenic Intergenic 17772 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 565.501-2 chr6 66898361 66899058 + 1.83333 NA Intergenic Intergenic 1110830 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 163.5-50 chr8 58512032 58512145 + 1.83333 NA Intergenic L1MB7|LINE|L1 -11925 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 485.5-3 chr20 52607113 52607591 + 1.83333 NA Intergenic Tigger6a|DNA|TcMar-Tigger -13486 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 607.166 chr17 32349990 32350763 + 1.83333 NA TTS (NR_030362) TTS (NR_030362) 238 NM_001098507 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 522 chr10 96340202 96341058 + 1.83333 NA Intergenic L1MEc|LINE|L1 16529 NM_001284323 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 382.167-3 chr13 42893154 42893526 + 1.83333 NA intron (NM_001002264, intron 11 of 12) L2a|LINE|L2 -20596 NR_126389 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 258.833-12 chr3 194604975 194605217 + 1.83333 NA intron (NM_001011655, intron 8 of 9) intron (NM_001011655, intron 8 of 9) 20828 NR_047575 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 333.833-7 chr18 6727829 6728179 + 1.83333 NA TTS (NR_134645) TTS (NR_134645) -1712 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 403.666-3 chr7 145653085 145653754 + 1.83333 NA Intergenic AluYf1|SINE|Alu -817366 NM_001350886 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 176.333-21 chr3 32326075 32326210 + 1.83333 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) -65711 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 415.166-4 chr6 49326649 49327161 + 1.83333 NA Intergenic L2a|LINE|L2 136348 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 358-7 chr21 37062108 37062388 + 1.83333 NA TTS (NR_131189) TTS (NR_131189) 1818 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 313.667-8 chr18 6546397 6546638 + 1.83333 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 35101 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 234.667-26 chr4 140253279 140253526 + 1.83333 NA Intergenic CpG -3906 NM_032547 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 419.333-2 chr12 18444199 18444736 + 1.83333 NA intron (NM_001288774, intron 18 of 32) MIRb|SINE|MIR 182927 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 167.5-43 chr8 132698281 132698521 + 1.83333 NA Intergenic Intergenic -22856 NM_001321961 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 388.166 chr1 174770565 174770874 + 1.83333 NA intron (NM_001366451, intron 3 of 12) intron (NM_001366451, intron 3 of 12) -29019 NM_001366456 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 463.166-2 chr8 14264465 14264794 + 1.83333 NA intron (NM_001322879, intron 2 of 6) L1M1|LINE|L1 588881 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 303.334-3 chr11 30375289 30375523 + 1.83333 NA Intergenic Intergenic 52302 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 383.667-3 chr14 91060708 91061046 + 1.83333 NA promoter-TSS (NM_001322234) promoter-TSS (NM_001322234) -228 NM_182398 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 357.834-10 chr8 126306421 126306761 + 1.83333 NA Intergenic L1MEc|LINE|L1 -18904 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 193.5-15 chr15 81947848 81947974 + 1.83333 NA Intergenic Intergenic 98107 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 250.833-2 chr11 11777687 11777975 + 1.83333 NA Intergenic Intergenic 5391 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 301-3 chr10 96892943 96893283 + 1.83333 NA intron (NM_001170766, intron 2 of 8) L1MB7|LINE|L1 60168 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 165.666 chr10 58023790 58023912 + 1.83333 NA Intergenic Intergenic 244043 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 310.333-16 chr9 116737027 116737614 + 1.83333 NA intron (NM_014010, intron 12 of 21) intron (NM_014010, intron 12 of 21) 50015 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 320.166-2 chr8 105518825 105519023 + 1.83333 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 199381 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 308.666-4 chr2 225735752 225735931 + 1.83333 NA Intergenic Intergenic 334955 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 682.833 chr11 61435428 61436089 + 1.83333 NA intron (NM_017841, intron 1 of 3) L1M3c|LINE|L1 5633 NM_017841 54949 Hs.313247 NM_017841 ENSG00000167985 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 450.833-5 chr8 118590889 118591258 + 1.83333 NA intron (NR_109794, intron 1 of 4) L1ME2|LINE|L1 -29928 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 319-6 chr2 138828200 138828437 + 1.83333 NA Intergenic Intergenic -47928 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 403.5 chr1 45490722 45491270 + 1.83333 NA 5' UTR (NM_001320800, exon 1 of 10) 5' UTR (NM_001320800, exon 1 of 10) 167 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 270.833 chr1 25721555 25721793 + 1.83333 NA intron (NM_020379, intron 2 of 11) L1MB7|LINE|L1 -78519 NM_020451 57190 Hs.323396 NM_020451 ENSG00000162430 SELENON CFTD|MDRS1|RSMD1|RSS|SELN|SEPN1 selenoprotein N protein-coding 231-23 chr22 32466705 32466849 + 1.83333 NA Intergenic Intergenic -8034 NM_012179 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 363.333-10 chr9 120481561 120481901 + 1.83333 NA intron (NR_073558, intron 14 of 37) AluSx3|SINE|Alu 98436 NM_018249 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 344.333-13 chr7 14734932 14735136 + 1.83333 NA intron (NM_001350717, intron 5 of 24) intron (NM_001350717, intron 5 of 24) 106416 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 464.5-5 chr19 14871377 14871788 + 1.83333 NA Intergenic L1PA13|LINE|L1 9773 NM_030901 26333 Hs.247717 NM_030901 ENSG00000185385 OR7A17 BC85395_4|HTPCRX19 olfactory receptor family 7 subfamily A member 17 protein-coding 420.666 chr10 130206809 130207089 + 1.83333 NA Intergenic Intergenic 70540 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 295.834-10 chr9 129930526 129930858 + 1.83333 NA intron (NM_001363755, intron 6 of 15) intron (NM_001363755, intron 6 of 15) 61087 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 433.166-3 chr2 44397173 44397547 + 1.83333 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 35413 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 361.166-4 chr8 130828565 130828812 + 1.83333 NA intron (NM_001115, intron 12 of 17) HUERS-P3-int|LTR|ERV1 212221 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 468.667-2 chr21 36630465 36631128 + 1.83333 NA Intergenic MIR3|SINE|MIR -54227 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 334-14 chr8 12753040 12753554 + 1.83333 NA intron (NR_138256, intron 1 of 10).2 intron (NR_138256, intron 1 of 10).2 2229 NM_152271 91694 Hs.180178 NM_152271 ENSG00000154359 LONRF1 RNF191 LON peptidase N-terminal domain and ring finger 1 protein-coding 411.166-2 chr12 86909646 86910078 + 1.83333 NA Intergenic L1ME1|LINE|L1 -70862 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 417.666-4 chr9 34048898 34049224 + 1.83333 NA promoter-TSS (NM_018449) promoter-TSS (NM_018449) -112 NM_018449 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 235.667-13 chr15 70709348 70709617 + 1.83333 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) -7200 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 290-15 chr4 116357667 116357880 + 1.83333 NA Intergenic Intergenic 58048 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 241.333-34 chr7 26156323 26156504 + 1.83333 NA intron (NM_004289, intron 1 of 3) intron (NM_004289, intron 1 of 3) 4215 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 565.668 chr11 29448432 29449132 + 1.83333 NA Intergenic Intergenic -145631 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 286.333-5 chr19 35938784 35939143 + 1.83333 NA intron (NM_024509, intron 1 of 2) AluJr|SINE|Alu 2589 NM_024509 79414 Hs.143792 NM_024509 ENSG00000126243 LRFN3 FIGLER1|SALM4 leucine rich repeat and fibronectin type III domain containing 3 protein-coding 591.666-2 chr6 123414444 123415200 + 1.83333 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -24782 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 423.833-7 chr6 167139647 167140043 + 1.83333 NA TTS (NM_004367) TTS (NM_004367) 17092 NM_031409 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 165.5-35 chr5 69190400 69190507 + 1.83333 NA intron (NM_022909, intron 1 of 8) Cheshire|DNA|hAT-Charlie 870 NM_022909 64946 Hs.631967 NM_022909 ENSG00000153044 CENPH - centromere protein H protein-coding 441.166 chr10 50275831 50276173 + 1.83333 NA Intergenic Intergenic -27392 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 237.333-6 chr11 70512905 70513077 + 1.83333 NA intron (NM_133266, intron 2 of 10) L1MEf|LINE|L1 114462 NM_001184740 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 501.166 chr8 92818307 92819039 + 1.83333 NA Intergenic L2c|LINE|L2 -32613 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 307 chr1 226552257 226552574 + 1.83333 NA intron (NM_001003665, intron 1 of 3) intron (NM_001003665, intron 1 of 3) 3651 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 658 chr22 29306261 29307058 + 1.83333 NA promoter-TSS (NM_001362985) promoter-TSS (NM_001362985) -364 NM_152236 10634 Hs.322852 NM_006478 ENSG00000185340 GAS2L1 GAR22 growth arrest specific 2 like 1 protein-coding 282.833-9 chr2 126432622 126432887 + 1.83333 NA Intergenic HAL1ME|LINE|L1 -223181 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 451.833 chr22 40636744 40637239 + 1.83333 NA promoter-TSS (NM_001282661) promoter-TSS (NM_001282661) -272 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 295.666-6 chr12 49130309 49130590 + 1.83333 NA intron (NM_006082, intron 1 of 3) CpG 946 NM_006082 10376 Hs.524390 NM_006082 ENSG00000123416 TUBA1B K-ALPHA-1 tubulin alpha 1b protein-coding 298.666-6 chr19 15300988 15301248 + 1.83333 NA intron (NM_001330384, intron 1 of 11) L1ME1|LINE|L1 -20667 NM_014299 23476 Hs.187763 NM_014299 ENSG00000141867 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 423.499-3 chr9 130107070 130107479 + 1.83333 NA intron (NM_020960, intron 13 of 17) intron (NM_020960, intron 13 of 17) 36945 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 245.833-13 chr17 80196080 80196303 + 1.83333 NA intron (NM_024110, intron 11 of 20) intron (NM_024110, intron 11 of 20) 8391 NM_052819 79092 Hs.675480 NM_024110 ENSG00000141527 CARD14 BIMP2|CARMA2|PRP|PSORS2|PSS1 caspase recruitment domain family member 14 protein-coding 325.666 chr13 28324847 28325168 + 1.83333 NA intron (NM_002019, intron 20 of 29) intron (NM_002019, intron 20 of 29) 170121 NM_001160031 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 227.167-7 chr14 71685160 71685419 + 1.83333 NA intron (NM_001354286, intron 13 of 24) intron (NM_001354286, intron 13 of 24) 98991 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 326.667-2 chr16 22632895 22633193 + 1.83333 NA Intergenic Intergenic 87346 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 426.833-3 chr2 222056852 222057621 + 1.83333 NA Intergenic Intergenic -240911 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 352.834-10 chr8 131034168 131034516 + 1.83333 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 6567 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 278.5-5 chr11 104334257 104334628 + 1.83333 NA Intergenic L1MEc|LINE|L1 -170295 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 252.666-2 chr12 41417707 41417887 + 1.83333 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -19942 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 336.166 chr19 39765425 39765639 + 1.83333 NA Intergenic Intergenic -11062 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 412.333-5 chr5 135462380 135462645 + 1.83333 NA Intergenic Intergenic -10161 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 273.666-4 chr2 99561600 99561843 + 1.83333 NA intron (NM_001025108, intron 19 of 23) L1MDa|LINE|L1 -71704 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 241.5-18 chr5 148351125 148351335 + 1.83333 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 15671 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 335.667-3 chr12 65943175 65943590 + 1.83333 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -61057 NR_158985 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 438.167-4 chr2 121718633 121718963 + 1.83333 NA intron (NR_037857, intron 3 of 3) intron (NR_037857, intron 3 of 3) 18077 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 196-44 chr8 87265993 87266154 + 1.83333 NA intron (NM_173538, intron 6 of 10) L1ME3D|LINE|L1 399658 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 431.333-2 chr14 34331414 34331787 + 1.83333 NA Intergenic Intergenic 130640 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 445.499 chr1 91837671 91837943 + 1.83333 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 48344 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 281.667-11 chr2 141911692 141911923 + 1.83333 NA intron (NM_018557, intron 1 of 90) LTR55|LTR|ERVL? 219894 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 338.5-15 chr9 126940569 126941036 + 1.83333 NA intron (NM_001366400, intron 1 of 18) intron (NM_001366400, intron 1 of 18) -21423 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 239.499 chr7 79427968 79428135 + 1.83333 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -24906 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 238.834-10 chr5 74063944 74064326 + 1.83333 NA Intergenic MER97a|DNA|hAT-Tip100 244190 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 453.999-3 chr6 157045232 157045558 + 1.83333 NA intron (NM_001363725, intron 2 of 17) intron (NM_001363725, intron 2 of 17) 8968 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 350.167-11 chr6 81576554 81576808 + 1.83333 NA Intergenic Intergenic 176000 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 442.333-3 chr6 161848662 161848938 + 1.83333 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 377823 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 169.166 chr12 130861556 130861663 + 1.83333 NA Intergenic Intergenic -10385 NM_001300796 5901 Hs.10842 NM_006325 ENSG00000132341 RAN ARA24|Gsp1|TC4 RAN, member RAS oncogene family protein-coding 366.5-6 chr4 43954371 43954843 + 1.83333 NA Intergenic L2|LINE|L2 -62254 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 281.834-5 chr3 126531551 126531957 + 1.83333 NA intron (NR_130715, intron 4 of 5) L1MB7|LINE|L1 7599 NM_152889 166012 Hs.292375 NM_152889 ENSG00000180767 CHST13 C4ST3 carbohydrate sulfotransferase 13 protein-coding 304.166-3 chr20 9460196 9460609 + 1.83333 NA intron (NM_000933, intron 31 of 35) intron (NM_000933, intron 31 of 35) -53956 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 195.5-32 chr6 70291433 70291570 + 1.83333 NA intron (NM_001851, intron 5 of 37) L2c|LINE|L2 -8304 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 178.666-2 chr11 115893930 115894168 + 1.83333 NA Intergenic Intergenic -133849 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 327.833-5 chr20 60848751 60849054 + 1.83333 NA Intergenic Intergenic -230162 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 341.5-12 chr2 112764992 112765230 + 1.83333 NA promoter-TSS (NM_152515) promoter-TSS (NM_152515) -502 NR_130712 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 426.833-5 chr7 90886211 90886566 + 1.83333 NA intron (NM_012395, intron 5 of 13) intron (NM_012395, intron 5 of 13) 176572 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 565.332 chr5 145543412 145543802 + 1.83333 NA Intergenic Intergenic 291735 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 274.5-14 chr3 49871736 49872029 + 1.83333 NA Intergenic Intergenic -1976 NM_001320147 79012 Hs.145156 NM_024046 ENSG00000164076 CAMKV 1G5|VACAMKL CaM kinase like vesicle associated protein-coding 478.667-4 chr7 28039315 28039742 + 1.83333 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -140929 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 293-18 chr5 49658019 49658344 + 1.83333 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 783107 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 283.666-6 chr6 83055342 83055498 + 1.83333 NA intron (NR_146807, intron 2 of 10) intron (NR_146807, intron 2 of 10) 10421 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 357.833-10 chr8 100241168 100241516 + 1.83333 NA 3' UTR (NM_172218, exon 19 of 19) 3' UTR (NM_172218, exon 19 of 19) 60851 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 197.833-28 chr5 67883501 67883711 + 1.83333 NA Intergenic L2c|LINE|L2 90393 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 224.333-10 chr12 120583543 120583811 + 1.83333 NA Intergenic Intergenic -2275 NM_015918 51367 Hs.279913 NM_015918 ENSG00000167272 POP5 HSPC004|RPP2|RPP20|hPop5 POP5 homolog, ribonuclease P/MRP subunit protein-coding 566.333 chr4 78059485 78060522 + 1.83333 NA intron (NM_001166133, intron 1 of 41) intron (NM_001166133, intron 1 of 41) 2433 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 185.166 chr12 77847856 77848002 + 1.83333 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 17035 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 442.166 chr7 80801014 80801376 + 1.83333 NA intron (NM_006379, intron 9 of 17) intron (NM_006379, intron 9 of 17) 117856 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 384.833-3 chr12 116738078 116738683 + 1.83333 NA promoter-TSS (NM_001353625) promoter-TSS (NM_001353625) 65 NM_032814 84900 Hs.437195 NM_032814 ENSG00000135119 RNFT2 TMEM118 ring finger protein, transmembrane 2 protein-coding 280.333-2 chr10 10734917 10735074 + 1.83333 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 59919 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 184.166-2 chr12 113174332 113174603 + 1.83333 NA intron (NM_001111322, intron 10 of 19) AluJb|SINE|Alu 11011 NM_001111322 79039 Hs.506861 NM_024072 ENSG00000123064 DDX54 DP97 DEAD-box helicase 54 protein-coding 224-9 chr12 70724581 70724828 + 1.83333 NA intron (NM_130846, intron 2 of 9) (TGCTAC)n|Simple_repeat|Simple_repeat 29904 NM_130846 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 262.333-12 chr17 42325105 42325535 + 1.83333 NA intron (NM_001369512, intron 15 of 23) intron (NM_001369512, intron 15 of 23) 37264 NM_001288719 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 255.166-5 chr6 65267189 65267412 + 1.83333 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -34118 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 279-15 chr19 3035846 3036099 + 1.83333 NA intron (NM_001144761, intron 2 of 19) intron (NM_001144761, intron 2 of 19) -6358 NM_001144762 7089 Hs.332173 NM_003260 ENSG00000065717 TLE2 ESG|ESG2|GRG2 TLE family member 2, transcriptional corepressor protein-coding 486.667-2 chr15 26492926 26493449 + 1.83333 NA Intergenic L1MC4a|LINE|L1 135903 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 493.999 chr19 36662625 36663038 + 1.83333 NA intron (NM_001322821, intron 2 of 5) L1MC4|LINE|L1 4006 NM_001322823 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 317.833-14 chr7 113754442 113754756 + 1.83333 NA Intergenic Intergenic 164410 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 418.499 chr3 184540274 184540536 + 1.83333 NA Intergenic MIR3|SINE|MIR 16513 NR_046593 100874079 Hs.574899 NR_046593 ENSG00000230215 LINC01840 EIF2B5-AS1 long intergenic non-protein coding RNA 1840 ncRNA 376-5 chr2 66509260 66509609 + 1.83333 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -64596 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 429.5-5 chr20 25077983 25078429 + 1.83333 NA TTS (NM_199425) TTS (NM_199425) 4173 NR_045948 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 704.665 chr14 35159886 35160523 + 1.83333 NA intron (NM_014672, intron 4 of 7) intron (NM_014672, intron 4 of 7) 37652 NM_014672 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 404.666-9 chr8 4868550 4869130 + 1.83333 NA intron (NM_033225, intron 1 of 69) MIR|SINE|MIR 126074 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 268-13 chr13 86820069 86820272 + 1.83333 NA Intergenic Intergenic -91750 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 524.667-7 chr5 173283877 173284262 + 1.83333 NA Intergenic Intergenic -19661 NR_162132 113219469 NR_162132 MIR12118 - microRNA 12118 ncRNA 379-2 chr12 6093155 6093625 + 1.83333 NA intron (NM_000552, intron 6 of 51) LTR16|LTR|ERVL 31285 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 191.833-16 chr22 30939063 30939215 + 1.83333 NA intron (NM_001303257, intron 12 of 25) intron (NM_001303257, intron 12 of 25) 16831 NR_026920 150291 Hs.592202 NM_153044 ENSG00000235989 MORC2-AS1 C22orf27|NCRNA00325 MORC2 antisense RNA 1 ncRNA 304-11 chr15 92280402 92280619 + 1.83333 NA Intergenic Intergenic -113371 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 315.833-12 chr8 138729621 138729819 + 1.83333 NA intron (NM_152888, intron 23 of 64) intron (NM_152888, intron 23 of 64) 184321 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 535.167-3 chr19 2523260 2523957 + 1.83333 NA intron (NM_052847, intron 3 of 4) L1MD2|LINE|L1 47481 NM_015675 4616 Hs.110571 NM_015675 ENSG00000099860 GADD45B GADD45BETA|MYD118 growth arrest and DNA damage inducible beta protein-coding 265.666-4 chr2 41546962 41547202 + 1.83333 NA Intergenic Intergenic -330473 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 303.833-6 chr19 43668671 43669185 + 1.83333 NA intron (NM_001005376, intron 1 of 6) CpG 1241 NM_001005377 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 426.333-8 chr9 77037480 77037831 + 1.83333 NA Intergenic Intergenic 18000 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 528 chr12 106136130 106136787 + 1.83333 NA intron (NM_014840, intron 1 of 6) intron (NM_014840, intron 1 of 6) 3575 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 264.833-2 chr1 191848489 191848755 + 1.83333 NA Intergenic MLT1E|LTR|ERVL-MaLR -309840 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 210.667-53 chr8 86108711 86108909 + 1.83333 NA intron (NM_152565, intron 1 of 7) intron (NM_152565, intron 1 of 7) 9900 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 244.166-3 chr11 67529387 67529565 + 1.83333 NA Intergenic L1MB7|LINE|L1 -6030 NM_016366 51475 Hs.278984 NM_016366 ENSG00000167791 CABP2 DFNB93 calcium binding protein 2 protein-coding 285.5-19 chr3 107118373 107118621 + 1.83333 NA intron (NR_028303, intron 2 of 3) intron (NR_028303, intron 2 of 3) 122141 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 261.5-21 chr2 72223418 72223632 + 1.83333 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -75663 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 311.5-19 chr6 92658209 92658467 + 1.83333 NA Intergenic Intergenic 761221 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 217.666-2 chr5 105985670 105985821 + 1.83333 NA Intergenic L1ME1|LINE|L1 886271 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 217.333-48 chrX 121385950 121386170 + 1.83333 NA Intergenic L1ME3A|LINE|L1 15088 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 477.834 chr1 205061550 205061959 + 1.83333 NA intron (NM_001346083, intron 8 of 22) intron (NM_001346083, intron 8 of 22) 18542 NR_144350 6900 Hs.519220 NM_005076 ENSG00000184144 CNTN2 AXT|FAME5|TAG-1|TAX|TAX1 contactin 2 protein-coding 312-20 chr6 6593382 6593613 + 1.83333 NA intron (NM_004271, intron 1 of 4) MIRb|SINE|MIR 4777 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 214.166-3 chr2 223260494 223260688 + 1.83333 NA Intergenic Intergenic 208661 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 368.666-3 chr18 26383651 26383929 + 1.83333 NA intron (NM_005640, intron 14 of 14) intron (NM_005640, intron 14 of 14) -39205 NR_110762 100506787 Hs.734746 NR_110762 LINC01543 - long intergenic non-protein coding RNA 1543 ncRNA 442.499 chr13 67426118 67426418 + 1.83333 NA Intergenic AluJo|SINE|Alu 53881 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 221.166 chr12 73628252 73628515 + 1.83333 NA Intergenic LTR104_Mam|LTR|Gypsy 469193 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 393.167-3 chr14 35878622 35878944 + 1.83333 NA Intergenic Intergenic 52445 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 168-18 chr14 66930248 66930369 + 1.83333 NA intron (NM_020806, intron 8 of 22) L1MA3|LINE|L1 -259132 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 194.5-45 chr6 158597862 158598008 + 1.83333 NA intron (NM_020823, intron 6 of 16) MLT1A1|LTR|ERVL-MaLR -11772 NR_106981 102465694 NR_106981 ENSG00000278571 MIR7161 hsa-mir-7161 microRNA 7161 ncRNA 291.166-3 chr11 68426865 68427112 + 1.83333 NA intron (NM_002335, intron 16 of 22) MLT1E1A|LTR|ERVL-MaLR -33764 NR_147970 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 173.166 chr4 40046497 40046605 + 1.83333 NA intron (NR_027277, intron 1 of 2) intron (NR_027277, intron 1 of 2) -10299 NM_001318359 55728 Hs.391463 NM_018177 ENSG00000078177 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 209.833-14 chr2 161474425 161474644 + 1.83333 NA Intergenic L1M7|LINE|L1 33368 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 217.5-26 chr7 55885416 55885642 + 1.83333 NA Intergenic Cheshire|DNA|hAT-Charlie -1927 NM_001366796 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 414.833-7 chr20 60224728 60225082 + 1.83333 NA intron (NR_046099, intron 3 of 4) AluJb|SINE|Alu -83569 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 252.166-2 chr6 121105281 121105465 + 1.83333 NA intron (NR_104452, intron 34 of 35) L1M5|LINE|L1 229107 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 504.333 chr10 81154769 81155383 + 1.83333 NA Intergenic Intergenic 505279 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 330-7 chr15 56805949 56806265 + 1.83333 NA Intergenic MER44C|DNA|TcMar-Tigger -72021 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 495.001 chr14 19872640 19873398 + 1.83333 NA Intergenic MLT2E|LTR|ERVL -3249 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 415.666-3 chr4 39911896 39912182 + 1.83333 NA intron (NM_001100399, intron 9 of 32) intron (NM_001100399, intron 9 of 32) 65872 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 417.499-2 chr2 10911500 10911897 + 1.83333 NA promoter-TSS (NM_002236) promoter-TSS (NM_002236) -236 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 424.499 chr14 43469955 43470251 + 1.83333 NA Intergenic L1MEc|LINE|L1 1037180 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 424.666 chr1 67849045 67849425 + 1.83333 NA intron (NR_040077, intron 1 of 9) (GTA)n|Simple_repeat|Simple_repeat -15768 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 295.833-2 chr18 13757908 13758171 + 1.83333 NA intron (NM_001308263, intron 11 of 11) Tigger1|DNA|TcMar-Tigger 31366 NM_003799 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 427.499-2 chr5 176578475 176578780 + 1.83333 NA intron (NM_017675, intron 16 of 31) intron (NM_017675, intron 16 of 31) 29285 NM_017675 54825 Hs.4205 NM_017675 ENSG00000074276 CDHR2 PCDH24|PCLKC cadherin related family member 2 protein-coding 491.499 chr18 58764441 58764811 + 1.83333 NA Intergenic AluJo|SINE|Alu -49254 NR_146904 105372147 Hs.210837 NR_146904 ENSG00000267593 LINC01926 - long intergenic non-protein coding RNA 1926 ncRNA 763.5-3 chrX 154980544 154981264 + 1.83333 NA intron (NM_000132, intron 6 of 25) AluJr|SINE|Alu 41819 NM_000132 2157 Hs.632836 NM_000132 ENSG00000185010 F8 AHF|DXS1253E|F8B|F8C|FVIII|HEMA coagulation factor VIII protein-coding 415.833-7 chr4 112443910 112444296 + 1.83333 NA Intergenic L1M5|LINE|L1 -71276 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 579.333 chr1 165143463 165144128 + 1.83333 NA Intergenic MIR3|SINE|MIR 212446 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 340.5-4 chr19 16062668 16062950 + 1.83333 NA Intergenic LTR16C|LTR|ERVL -2878 NR_146442 105372292 Hs.635664 NR_146442 ENSG00000267517 LINC01855 - long intergenic non-protein coding RNA 1855 ncRNA 688.166-3 chr7 95687368 95688174 + 1.83333 NA Intergenic Intergenic -84735 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 462.666-5 chr8 85620938 85621309 + 1.83333 NA Intergenic L1M5|LINE|L1 34553 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 679.167-2 chr7 112414606 112415738 + 1.83333 NA Intergenic Intergenic -7972 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 316-3 chr13 84596761 84597056 + 1.83333 NA intron (NR_046871, intron 6 of 6) HSMAR2|DNA|TcMar-Mariner -186746 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 230.5-4 chr10 58143847 58144065 + 1.83333 NA Intergenic LTR8B|LTR|ERV1 123938 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 384.999-3 chr7 84845089 84845452 + 1.83333 NA Intergenic Intergenic 276661 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 240-18 chr14 59218481 59218905 + 1.83333 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) 30026 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 365.5-4 chr10 108112178 108112636 + 1.83333 NA Intergenic MER66-int|LTR|ERV1 -43114 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 514.833 chr17 62733114 62733519 + 1.83333 NA intron (NM_001288780, intron 7 of 10) L1ME3E|LINE|L1 27110 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 396.166-2 chr14 47488758 47489119 + 1.83333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -145692 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 193.666-7 chr3 108505062 108505281 + 1.83333 NA intron (NM_014981, intron 3 of 41) intron (NM_014981, intron 3 of 41) 24151 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 237.166-11 chrX 103175004 103175188 + 1.83333 NA Intergenic Intergenic -39996 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 233.667-16 chr16 52836809 52836962 + 1.83333 NA Intergenic Tigger3|DNA|TcMar-Tigger 215988 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 325.833 chr10 81297114 81297444 + 1.83333 NA Intergenic L1PA16|LINE|L1 -577915 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 345.5-14 chr3 196677286 196677629 + 1.83333 NA Intergenic Intergenic 34793 NM_032898 84984 Hs.282800 NM_032898 ENSG00000174007 CEP19 C3orf34|MOSPGF centrosomal protein 19 protein-coding 323.666-13 chr9 127986980 127987222 + 1.83333 NA Intergenic MIR1_Amn|SINE|MIR -6112 NM_001035254 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 340.333-7 chr17 71455138 71455594 + 1.83333 NA Intergenic Intergenic -253187 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 447.666 chr1 118756712 118757009 + 1.83333 NA Intergenic L2|LINE|L2 231483 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 304.5 chr1 63877879 63878299 + 1.83333 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 104072 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 291-20 chr3 182583183 182583428 + 1.83333 NA Intergenic Intergenic -76181 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 293.666-2 chr1 217396025 217396446 + 1.83333 NA Intergenic Intergenic 234855 NM_001297754 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 394.166-4 chr6 135535636 135536118 + 1.83333 NA intron (NR_152845, intron 2 of 4) AluJb|SINE|Alu 38076 NR_152843 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 446.666-3 chr3 14651449 14651873 + 1.83333 NA promoter-TSS (NR_135523) promoter-TSS (NR_135523) -85 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 188.166-3 chr2 61645874 61646016 + 1.83333 NA Intergenic L1MB5|LINE|L1 -107589 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 313.5-22 chr5 158738568 158738892 + 1.83333 NA intron (NM_001324107, intron 10 of 15) intron (NM_001324107, intron 10 of 15) -328957 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 296.167-13 chr4 4382092 4382399 + 1.83333 NA Intergenic Intergenic -4011 NM_001287764 27065 Hs.518595 NM_014392 ENSG00000168824 NSG1 D4S234|D4S234E|NEEP21|P21 neuronal vesicle trafficking associated 1 protein-coding 238.167-23 chr3 188129587 188129817 + 1.83333 NA Intergenic Intergenic -24196 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 206.333-25 chr2 188268945 188269057 + 1.83333 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 18690 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 218.667-15 chr2 30872636 30872866 + 1.83333 NA Intergenic L2a|LINE|L2 -65305 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 325.333-16 chr8 140288738 140288984 + 1.83333 NA intron (NM_001160372, intron 12 of 22) intron (NM_001160372, intron 12 of 22) 168883 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 185.5-7 chr11 4202801 4202949 + 1.83333 NA TTS (NR_047550) TTS (NR_047550) 15723 NR_047550 100506082 Hs.445705 NR_047550 ENSG00000254480 LINC02749 - long intergenic non-protein coding RNA 2749 ncRNA 692.667-2 chr12 64890606 64891709 + 1.83333 NA intron (NR_033988, intron 1 of 2) intron (NR_033988, intron 1 of 2) 7383 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 356.666-4 chr20 60211234 60211586 + 1.83333 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) 72918 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 457.833-5 chr22 19780270 19780767 + 1.83333 NA TTS (NM_080646) TTS (NM_080646) 23815 NM_080646 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 268.666-7 chr6 63727164 63727387 + 1.83333 NA intron (NM_001142800, intron 41 of 42) intron (NM_001142800, intron 41 of 42) -79561 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 231.166-4 chr7 41024956 41025103 + 1.83333 NA Intergenic L1ME3E|LINE|L1 -45090 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 249.833-17 chr5 77144378 77144752 + 1.83333 NA intron (NR_024398, intron 3 of 3) intron (NR_024398, intron 3 of 3) -35739 NM_001349750 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 203-31 chr6 54205910 54206035 + 1.83333 NA intron (NM_138569, intron 10 of 12) intron (NM_138569, intron 10 of 12) 94529 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 317.666 chr10 95671444 95671698 + 1.83333 NA intron (NM_015631, intron 13 of 13) intron (NM_015631, intron 13 of 13) -14860 NM_001017423 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 295.166 chr12 5099590 5099862 + 1.83333 NA Intergenic Intergenic 55847 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 279.333-21 chr8 118833904 118834159 + 1.83333 NA Intergenic L1M4|LINE|L1 117854 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 442.833-4 chr2 86221039 86221458 + 1.83333 NA intron (NM_001371279, intron 7 of 8) intron (NM_001371279, intron 7 of 8) 21791 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 328.166-3 chr14 87752562 87752761 + 1.83333 NA Intergenic L1ME4b|LINE|L1 -97367 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 398-9 chr19 42433819 42434245 + 1.83333 NA intron (NM_198477, intron 1 of 3) FLAM_C|SINE|Alu -6644 NM_005357 3991 Hs.656980 NM_005357 ENSG00000079435 LIPE AOMS4|FPLD6|HSL|LHS lipase E, hormone sensitive type protein-coding 279-33 chr9 93588902 93589081 + 1.83333 NA intron (NM_005392, intron 1 of 21) intron (NM_005392, intron 1 of 21) -5850 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 781 chr2 37412763 37413864 + 1.83333 NA Intergenic L1ME4a|LINE|L1 68683 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 310.166-6 chr8 91100242 91100462 + 1.83333 NA Intergenic L2a|LINE|L2 -2267 NR_148895 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 267.5-25 chr2 69397576 69397790 + 1.83333 NA intron (NR_045632, intron 5 of 5) AluSq2|SINE|Alu -10429 NM_001244710 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 376.333-9 chr16 53106161 53106452 + 1.83333 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) -24706 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 445.999 chr4 29763032 29763385 + 1.83333 NA Intergenic L2c|LINE|L2 548916 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 382.666-3 chr20 51992022 51992292 + 1.83333 NA Intergenic Intergenic 113327 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 419.5-5 chr2 55616831 55617194 + 1.83333 NA intron (NM_020463, intron 1 of 14) intron (NM_020463, intron 1 of 14) 610 NM_020463 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 380.001-2 chr5 153679206 153679612 + 1.83333 NA intron (NM_000827, intron 7 of 15) MIR3|SINE|MIR 187237 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 232.333-9 chr15 60200218 60200417 + 1.83333 NA Intergenic L1ME3Cz|LINE|L1 196006 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 230.166-2 chr10 90912379 90912511 + 1.83333 NA 3' UTR (NM_014391, exon 9 of 9) 3' UTR (NM_014391, exon 9 of 9) 8830 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 200.833-28 chr7 117399424 117400037 + 1.83333 NA intron (NM_001301821, intron 4 of 12) L1MB7|LINE|L1 27763 NM_130768 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 339.333-2 chr1 162852875 162853077 + 1.83333 NA Intergenic Intergenic 15839 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 912.333 chr7 95500626 95501620 + 1.83333 NA intron (NM_145872, intron 2 of 2) intron (NM_145872, intron 2 of 2) 15180 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 279-18 chr2 175931088 175931399 + 1.83333 NA intron (NM_001305010, intron 11 of 11) intron (NM_001305010, intron 11 of 11) 71024 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 326.833-12 chr2 155708000 155708273 + 1.83333 NA Intergenic Intergenic 546795 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 443.334-3 chr19 50148793 50149240 + 1.83333 NA Intergenic Intergenic -8696 NR_024243 100170227 Hs.717309 NR_024243 SNAR-D - small NF90 (ILF3) associated RNA D snRNA 554.834-2 chr5 28729647 28730095 + 1.83333 NA Intergenic L1MA4|LINE|L1 -196999 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 408.166-4 chr2 187495739 187496106 + 1.83333 NA intron (NM_001318941, intron 4 of 7) intron (NM_001318941, intron 4 of 7) -47670 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 345.333-2 chr12 58347825 58348041 + 1.83333 NA Intergenic MIRb|SINE|MIR -243769 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 494-2 chr14 60665288 60665685 + 1.83333 NA Intergenic Intergenic -16009 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 514.168 chr5 175235211 175235748 + 1.83333 NA Intergenic MER63D|DNA|hAT-Blackjack 208703 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 291.333-12 chr21 31363677 31364146 + 1.83333 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -19557 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 495.832 chr8 115548949 115549436 + 1.83333 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 118821 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 245.166 chr2 43222526 43222704 + 1.83333 NA 3' UTR (NM_006887, exon 2 of 2) 3' UTR (NM_006887, exon 2 of 2) 3991 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 426.167-2 chr12 124033212 124033624 + 1.83333 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 60203 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 342.166-6 chr8 115090835 115091096 + 1.83333 NA Intergenic L1MC1|LINE|L1 577048 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 310.499 chr3 51434965 51435239 + 1.83333 NA intron (NR_146065, intron 8 of 25) LTR101_Mam|LTR|ERVL 43817 NM_013286 29890 Hs.118738 NM_013286 ENSG00000259956 RBM15B HUMAGCGB|HsOTT3|OTT3 RNA binding motif protein 15B protein-coding 244.833-12 chrX 64093715 64094047 + 1.83333 NA Intergenic Intergenic 111827 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 343.999-3 chr22 37817547 37817861 + 1.83333 NA TTS (NM_001171690) TTS (NM_001171690) -5678 NM_003614 8484 Hs.158353 NM_003614 ENSG00000128310 GALR3 - galanin receptor 3 protein-coding 531.667-2 chr1 174743724 174744528 + 1.83333 NA intron (NM_001366451, intron 2 of 12) intron (NM_001366451, intron 2 of 12) 43131 NM_001366452 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 674.834 chrX 154748637 154749183 + 1.83333 NA intron (NR_104114, intron 1 of 8) intron (NR_104114, intron 1 of 8) 2167 NM_001282283 139716 Hs.496982 NM_080612 ENSG00000160219 GAB3 - GRB2 associated binding protein 3 protein-coding 449.166-3 chr15 56222512 56222885 + 1.83333 NA intron (NM_001370561, intron 4 of 11) L1MEf|LINE|L1 21181 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 165.5-5 chr10 52320047 52320164 + 1.83333 NA Intergenic MIR|SINE|MIR 5824 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 314.834-5 chr8 85348777 85349120 + 1.83333 NA intron (NM_001128830, intron 1 of 8) intron (NM_001128830, intron 1 of 8) -7234 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 469.166-3 chr6 139407650 139408054 + 1.83333 NA Intergenic Plat_L3|LINE|CR1 -33204 NM_006079 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 376.833-5 chr3 115336874 115337213 + 1.83333 NA Intergenic Intergenic -189755 NM_001348801 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 308-17 chr5 123370805 123371054 + 1.83333 NA intron (NM_153223, intron 18 of 20) intron (NM_153223, intron 18 of 20) 52663 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 538.666 chr17 56818212 56818596 + 1.83333 NA intron (NM_001085430, intron 4 of 7) AluJr|SINE|Alu 15516 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 276.999-2 chr8 121167614 121167832 + 1.83333 NA Intergenic Intergenic -355677 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 499.166 chr2 78333968 78334553 + 1.83333 NA Intergenic Intergenic -43529 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 345.5-23 chr9 102335727 102336008 + 1.83333 NA Intergenic Intergenic -183770 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 308.333-13 chr3 12034223 12034427 + 1.83333 NA intron (NM_133625, intron 1 of 12) L1MB7|LINE|L1 29934 NM_133625 6854 Hs.445503 NM_003178 ENSG00000157152 SYN2 SYNII synapsin II protein-coding 621.667 chr19 33119291 33120276 + 1.83333 NA intron (NR_135270, intron 18 of 20) AluSz|SINE|Alu -12331 NM_173479 126248 Hs.211046 NM_173479 ENSG00000166359 WDR88 PQWD WD repeat domain 88 protein-coding 190.5-45 chr6 142325892 142326088 + 1.83333 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 23983 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 287.999-2 chr15 92803866 92804063 + 1.83333 NA Intergenic Intergenic 8480 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 209-20 chr20 8218143 8218504 + 1.83333 NA intron (NM_182734, intron 2 of 32) Charlie2a|DNA|hAT-Charlie -30381 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 297-25 chr9 26962456 26962720 + 1.83333 NA intron (NM_001099224, intron 2 of 13) intron (NM_001099224, intron 2 of 13) 6176 NM_025103 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 579.167-2 chr2 95388848 95389586 + 1.83333 NA Intergenic CpG -13491 NM_016044 51011 Hs.531247 NM_016044 ENSG00000115042 FAHD2A CGI-105 fumarylacetoacetate hydrolase domain containing 2A protein-coding 403.833-3 chr12 92143595 92144100 + 1.83333 NA 3' UTR (NM_001731, exon 2 of 2) 3' UTR (NM_001731, exon 2 of 2) -1016 NR_046160 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 489.666 chr11 133082619 133082922 + 1.83333 NA intron (NM_001012393, intron 1 of 7) CpG -139002 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 239.333-33 chr8 5061454 5061721 + 1.83333 NA Intergenic L1MA9|LINE|L1 -66673 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 522.166-2 chr19 8578575 8579145 + 1.83333 NA Intergenic Intergenic -1418 NM_012335 4542 Hs.465818 NM_012335 ENSG00000142347 MYO1F - myosin IF protein-coding 307.5-15 chr18 11500490 11500778 + 1.83333 NA intron (NR_110778, intron 1 of 2) intron (NR_110778, intron 1 of 2) 10586 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 306-17 chr8 106498416 106498603 + 1.83333 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 50585 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 251.5-11 chr17 64390112 64390323 + 1.83333 NA intron (NM_000442, intron 2 of 15) HY1|scRNA|scRNA 643 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 233.667-17 chr17 410059 410289 + 1.83333 NA promoter-TSS (NM_001013672) promoter-TSS (NM_001013672) -151 NM_001013672 400566 Hs.499607 NM_001013672 ENSG00000187624 C17orf97 CK20|LIAT1 chromosome 17 open reading frame 97 protein-coding 598.333-2 chr7 70042218 70042874 + 1.83333 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 444071 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 324.166-5 chr6 16605359 16605699 + 1.83333 NA intron (NM_000332, intron 4 of 8) intron (NM_000332, intron 4 of 8) 154655 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 337.667-6 chr16 24016095 24016351 + 1.83333 NA intron (NM_002738, intron 3 of 16) intron (NM_002738, intron 3 of 16) 180240 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 340.166-3 chr2 132495044 132495321 + 1.83333 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 61471 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 629.999 chr2 160088172 160088778 + 1.83333 NA Intergenic HUERS-P3-int|LTR|ERV1 -25860 NM_001007267 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 348.666-12 chr7 23544834 23545110 + 1.83333 NA Intergenic L2|LINE|L2 -12931 NM_001282758 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 272.5-14 chr18 62194578 62194938 + 1.83333 NA intron (NR_144409, intron 1 of 31) intron (NR_144409, intron 1 of 31) 7503 NR_144403 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 542.666 chr15 78240867 78241475 + 1.83333 NA Intergenic Intergenic -6606 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 276.834 chr10 128263869 128264105 + 1.83333 NA Intergenic Intergenic -21963 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 524.833-2 chr10 117165744 117166274 + 1.83333 NA intron (NR_121650, intron 1 of 1) CpG 1765 NR_037436 100500893 NR_037436 ENSG00000266782 MIR3663 - microRNA 3663 ncRNA 204.166 chr18 79791569 79791769 + 1.83333 NA Intergenic Intergenic -71999 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 379-10 chr9 35924106 35924530 + 1.83333 NA Intergenic Intergenic 14828 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 215.5-15 chr4 185865979 185866224 + 1.83333 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -53845 NM_001145670 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 336.166-2 chr3 34628042 34628267 + 1.83333 NA Intergenic Intergenic 765869 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 378.833-8 chr5 59034251 59034552 + 1.83333 NA intron (NM_006203, intron 6 of 14) intron (NM_006203, intron 6 of 14) 5075 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 315.333-14 chr20 10031180 10031498 + 1.83333 NA intron (NR_040710, intron 3 of 4) MIRc|SINE|MIR -3648 NM_001303472 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 171.833-26 chr5 120037149 120037330 + 1.83333 NA Intergenic Intergenic 407680 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 496.167-2 chr1 154199183 154199638 + 1.83333 NA 3' UTR (NM_001010979, exon 4 of 4) 3' UTR (NM_001010979, exon 4 of 4) -5667 NR_030600 100126346 NR_030600 ENSG00000215938 MIR190B MIRN190B|mir-190b microRNA 190b ncRNA 425.666 chr6 132598209 132598654 + 1.83333 NA Intergenic Intergenic -8693 NM_003967 9038 Hs.248198 NM_003967 ENSG00000135569 TAAR5 PNR trace amine associated receptor 5 protein-coding 259.333-22 chr2 126359456 126359679 + 1.83333 NA Intergenic MIRb|SINE|MIR -241582 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 410.333 chr12 129979488 129979922 + 1.83333 NA Intergenic Intergenic 62637 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 586.667 chr13 84896085 84896553 + 1.83333 NA Intergenic Intergenic 112665 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 332 chr10 55441339 55441657 + 1.83333 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -157544 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 244-17 chr2 211165350 211165607 + 1.83333 NA Intergenic Intergenic 547907 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 343.5-9 chr2 165727911 165728159 + 1.83333 NA Intergenic Intergenic 66212 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 425.5-4 chr12 121602464 121602738 + 1.83333 NA Intergenic Intergenic 6072 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 198.5-34 chr4 61316953 61317094 + 1.83333 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 114851 NM_001371342 450.832-2 chr6 103098232 103098499 + 1.83333 NA Intergenic L1MA4A|LINE|L1 1699380 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 275.666-4 chr5 124118035 124118283 + 1.83333 NA intron (NR_125774, intron 4 of 5) L1PA16|LINE|L1 320361 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 380.167-3 chr22 28141887 28142251 + 1.83333 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -221457 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 722.999 chr4 76377995 76378587 + 1.83333 NA intron (NM_001042784, intron 8 of 23) intron (NM_001042784, intron 8 of 23) 29014 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 331.167-5 chr15 35751770 35752039 + 1.83333 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -174952 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 420.833 chr10 81991851 81992177 + 1.83333 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 114327 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 211.666-4 chr18 33037216 33037351 + 1.83333 NA intron (NM_001308126, intron 21 of 23) intron (NM_001308126, intron 21 of 23) -264260 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 176-40 chr7 114847727 114848152 + 1.83333 NA Intergenic Intergenic -74215 NM_001166346 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 257.167-2 chr12 117473128 117473355 + 1.83333 NA intron (NM_173598, intron 17 of 19) MER74A|LTR|ERVL -111439 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 255.333-14 chr2 178253249 178253484 + 1.83333 NA intron (NM_001201480, intron 1 of 25) intron (NM_001201480, intron 1 of 25) 58854 NM_001201480 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 429-8 chr2 118497077 118497444 + 1.83333 NA Intergenic Intergenic 105706 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 332.166-3 chr10 52328096 52328451 + 1.83333 NA Intergenic Intergenic 13992 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 438.666 chr15 23627202 23627626 + 1.83333 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR 20453 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 274.166 chr1 113747345 113747590 + 1.83333 NA intron (NM_001323043, intron 3 of 18) HAL1|LINE|L1 11688 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 278-4 chr1 246171473 246171699 + 1.83333 NA intron (NM_022743, intron 5 of 11) Tigger3c|DNA|TcMar-Tigger 245826 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 430.666 chr10 87854145 87854489 + 1.83333 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 9120 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53 regulated DNA replication inhibitor protein-coding 347.999 chr1 184939832 184940111 + 1.83333 NA intron (NM_052966, intron 1 of 13) intron (NM_052966, intron 1 of 13) 34537 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 166.667-29 chr2 118462016 118462193 + 1.83333 NA Intergenic L1M5|LINE|L1 140862 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 392.833-7 chrX 19904528 19905108 + 1.83333 NA Intergenic Intergenic -17218 NM_001353890 30011 Hs.726365 NM_031892 ENSG00000147010 SH3KBP1 AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18 SH3 domain containing kinase binding protein 1 protein-coding 1072.5 chr22 43346139 43347201 + 1.83333 NA Intergenic Intergenic -3298 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 179-16 chr16 19926736 19926883 + 1.83333 NA Intergenic L1M5|LINE|L1 -41175 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 308.5 chr1 177832002 177832222 + 1.83333 NA Intergenic Intergenic 131588 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 502.333-2 chr15 83204739 83205092 + 1.83333 NA intron (NM_016073, intron 1 of 5) intron (NM_016073, intron 1 of 5) 2908 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 245-24 chr3 51719040 51719386 + 1.83333 NA TTS (NM_001349117) TTS (NM_001349117) 12145 NM_000839 2912 Hs.121510 NM_000839 ENSG00000164082 GRM2 GLUR2|GPRC1B|MGLUR2|mGlu2 glutamate metabotropic receptor 2 protein-coding 323.166 chr1 161132554 161132762 + 1.83333 NA promoter-TSS (NM_001330765) promoter-TSS (NM_001330765) 9 NM_032998 9191 Hs.744092 NM_004216 ENSG00000158796 DEDD CASP8IP1|DEDD1|DEFT|FLDED1|KE05 death effector domain containing protein-coding 271.333-21 chr5 26590269 26590523 + 1.83333 NA Intergenic L1MC1|LINE|L1 448190 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 302.5-15 chr7 30799158 30799427 + 1.83333 NA intron (NR_037598, intron 7 of 19) intron (NR_037598, intron 7 of 19) 27875 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 290.333 chr1 30973277 30973509 + 1.83333 NA intron (NM_001020658, intron 10 of 21) L1ME4a|LINE|L1 -5156 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 324.333-4 chr2 192163840 192164180 + 1.83333 NA intron (NM_001305134, intron 4 of 9) L2a|LINE|L2 30923 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 203.5-13 chr12 111045176 111045376 + 1.83333 NA intron (NM_015267, intron 1 of 21) intron (NM_015267, intron 1 of 21) 11111 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 304.667-5 chr14 30522082 30522354 + 1.83333 NA intron (NR_151720, intron 3 of 3) intron (NR_151720, intron 3 of 3) -36905 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 238.666 chr1 41996292 41996570 + 1.83333 NA intron (NR_038261, intron 1 of 3) MLT1G|LTR|ERVL-MaLR 39503 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 197.333-26 chr3 57824071 57824321 + 1.83333 NA intron (NM_001304420, intron 1 of 21) L1M4|LINE|L1 -65718 NM_001311179 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 467.166 chr2 117470036 117470728 + 1.83333 NA Intergenic HUERS-P3-int|LTR|ERV1 -344309 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 294.666-2 chr11 59962822 59963082 + 1.83333 NA intron (NR_130719, intron 3 of 8) intron (NR_130719, intron 3 of 8) 20073 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 375-12 chr3 197200621 197201024 + 1.83333 NA intron (NM_001366216, intron 4 of 23) L1M2|LINE|L1 -16691 NM_001204387 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 429.5-8 chr7 93245312 93245956 + 1.83333 NA intron (NM_024553, intron 2 of 11) intron (NM_024553, intron 2 of 11) 13268 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 416.166 chr5 67165952 67166363 + 1.83333 NA exon (NM_001290226, exon 27 of 27) exon (NM_001290226, exon 27 of 27) 30642 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 305.333-6 chr18 67093424 67093610 + 1.83333 NA Intergenic Intergenic 11933 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 211.167-21 chr5 177491331 177491597 + 1.83333 NA intron (NM_203352, intron 4 of 12) (AGAC)n|Simple_repeat|Simple_repeat 6140 NM_005451 9260 Hs.533040 NM_005451 ENSG00000196923 PDLIM7 LMP1|LMP3 PDZ and LIM domain 7 protein-coding 337.666-7 chr7 13299355 13299631 + 1.83333 NA Intergenic Intergenic 611860 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 343.166-3 chr14 61429882 61430100 + 1.83333 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 108548 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 351.833-3 chr12 11590854 11591058 + 1.83333 NA Intergenic MIRc|SINE|MIR 42926 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 172.5-10 chr11 57779515 57779643 + 1.83333 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 17777 NM_001085459 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 209.166-5 chr7 31950331 31950521 + 1.83333 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 119981 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 374.666 chr15 86503547 86503800 + 1.83333 NA intron (NM_152336, intron 18 of 24) L1MB7|LINE|L1 -186705 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 296.667-21 chr7 43768279 43768581 + 1.83333 NA intron (NM_001253823, intron 2 of 8) MIRc|SINE|MIR 9750 NM_000712 644 Hs.488143 NM_000712 ENSG00000106605 BLVRA BLVR|BVR|BVRA biliverdin reductase A protein-coding 353.333-7 chr14 60657290 60657635 + 1.83333 NA Intergenic CpG -7985 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 445.166 chr1 201559537 201559886 + 1.83333 NA Intergenic Intergenic 39807 NR_026667 376693 Hs.605989 NR_026667 RPS10P7 RPS10_2_147 ribosomal protein S10 pseudogene 7 pseudo 278-29 chr8 133182689 133182906 + 1.83333 NA Intergenic Intergenic -8242 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 440.499-2 chr7 33999438 33999840 + 1.83333 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 94100 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 482.166-3 chr6 22235944 22236349 + 1.83333 NA Intergenic MamRTE1|LINE|RTE-BovB 60890 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 437-14 chrX 115147215 115147818 + 1.83333 NA intron (NM_001243963, intron 14 of 19) intron (NM_001243963, intron 14 of 19) -21074 NR_145764 109617004 NR_145764 ENSG00000271907 SNORA35B - small nucleolar RNA, H/ACA box 35B snoRNA 235-11 chr15 83687425 83687646 + 1.83333 NA intron (NM_207517, intron 2 of 29) intron (NM_207517, intron 2 of 29) 33412 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 567.166 chr6 157756429 157757090 + 1.83333 NA Intergenic Intergenic -66487 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 260.834-2 chr17 75162019 75162280 + 1.83333 NA Intergenic Intergenic -7466 NR_109933 51155 Hs.532803 NM_016185 ENSG00000189159 JPT1 ARM2|HN1|HN1A Jupiter microtubule associated homolog 1 protein-coding 400.5-5 chr7 137168962 137169406 + 1.83333 NA Intergenic Intergenic -4843 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 456.666-3 chr9 69193081 69193785 + 1.83333 NA intron (NM_001369871, intron 3 of 24) intron (NM_001369871, intron 3 of 24) -11578 NM_001170415 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 251.667-12 chr14 67202623 67202847 + 1.83333 NA intron (NM_173526, intron 3 of 8) MER63D|DNA|hAT-Blackjack 13295 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 176.333-3 chr10 78233407 78233644 + 1.83333 NA Intergenic Intergenic -15100 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 454.333 chr10 83476773 83477070 + 1.83333 NA Intergenic Intergenic 200168 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 284.667-17 chr8 28769459 28769999 + 1.83333 NA intron (NM_001363038, intron 16 of 16) intron (NM_001363038, intron 16 of 16) 68228 NR_073469 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 245-3 chr1 204214121 204214375 + 1.83333 NA promoter-TSS (NM_198447) promoter-TSS (NM_198447) -260 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 207-14 chr2 66750168 66750301 + 1.83333 NA Intergenic Intergenic -47007 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 460.666 chr18 48776951 48777280 + 1.83333 NA intron (NM_014772, intron 9 of 11) intron (NM_014772, intron 9 of 11) 106515 NR_039897 100616366 NR_039897 ENSG00000266276 MIR4743 - microRNA 4743 ncRNA 276.5-16 chr6 27650906 27651233 + 1.83333 NA Intergenic Intergenic -42966 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 276.833-2 chr12 1403704 1404051 + 1.83333 NA intron (NR_027948, intron 16 of 19) intron (NR_027948, intron 16 of 19) -96614 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 227-18 chr2 134892177 134892381 + 1.83333 NA intron (NR_036549, intron 1 of 4) intron (NR_036549, intron 1 of 4) 26327 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 641.333-3 chr19 3762629 3763094 + 1.83333 NA intron (NM_172251, intron 1 of 2) CpG 179 NM_172251 116541 Hs.356578 NM_172251 ENSG00000183617 MRPL54 L54mt|MRP-L54 mitochondrial ribosomal protein L54 protein-coding 296.166-6 chr4 105807291 105807624 + 1.83333 NA intron (NM_001370181, intron 5 of 11) L1MC4|LINE|L1 19715 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 496.333-4 chr6 47734344 47734697 + 1.83333 NA Intergenic Intergenic 35940 NM_153838 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 347-9 chr15 97296583 97296868 + 1.83333 NA Intergenic L1PB4|LINE|L1 225086 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 322.166-3 chr8 123839131 123839538 + 1.83333 NA Intergenic MIR3|SINE|MIR -12653 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 570 chr12 6825809 6826398 + 1.83333 NA intron (NM_019858, intron 3 of 4) intron (NM_019858, intron 3 of 4) -2304 NM_014262 10536 Hs.631655 NM_014262 ENSG00000110811 P3H3 GRCB|HSU47926|LEPREL2 prolyl 3-hydroxylase 3 protein-coding 247.5-33 chr3 174428548 174428747 + 1.83333 NA Intergenic ERVL-B4-int|LTR|ERVL -430687 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 379.666 chr12 124940828 124941146 + 1.83333 NA Intergenic L1MC5|LINE|L1 25440 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 239.833-3 chr13 99436807 99437136 + 1.83333 NA Intergenic Intergenic 62335 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 273.667-18 chr6 133214610 133214795 + 1.83333 NA Intergenic Intergenic -26655 NM_001370458 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 268.333-6 chr14 52418498 52418695 + 1.83333 NA Intergenic Intergenic 104284 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 686-3 chr8 138951210 138951914 + 1.83333 NA Intergenic Intergenic -37521 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 456.5-7 chr8 63211014 63211416 + 1.83333 NA non-coding (NR_102434, exon 4 of 4) non-coding (NR_102434, exon 4 of 4) 42212 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 179.833-21 chr2 211322417 211322531 + 1.83333 NA Intergenic L1M2|LINE|L1 704903 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 467.999-2 chr5 123443892 123444221 + 1.83333 NA Intergenic Intergenic -20464 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 363.333-5 chr3 72848680 72849059 + 1.83333 NA promoter-TSS (NM_018130) promoter-TSS (NM_018130) -424 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 236.833-14 chr2 147957654 147957918 + 1.83333 NA intron (NM_001190881, intron 3 of 10) MIRc|SINE|MIR 62951 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 648.167 chr7 35420492 35421073 + 1.83333 NA Intergenic Intergenic 106927 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 169.166-2 chr8 118905368 118905591 + 1.83333 NA Intergenic Intergenic 46406 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 262.666-6 chr6 56447589 56447758 + 1.83333 NA Intergenic LTR106_Mam|LTR|LTR -53545 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 551.666-3 chr17 63275260 63276011 + 1.83333 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 164632 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 295.5 chr1 17653719 17654027 + 1.83333 NA intron (NR_137287, intron 23 of 29) intron (NR_137287, intron 23 of 29) 35560 NM_001319838 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 266.166-2 chr14 46500768 46500999 + 1.83333 NA intron (NR_102699, intron 2 of 2) intron (NR_102699, intron 2 of 2) 29524 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 472-4 chr17 59745097 59745476 + 1.83333 NA intron (NM_001329401, intron 4 of 9) MIRb|SINE|MIR 37632 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 277-17 chr2 157417558 157417731 + 1.83333 NA intron (NM_004288, intron 7 of 7) intron (NM_004288, intron 7 of 7) 26445 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 588.833-4 chrX 69424089 69424595 + 1.83333 NA Intergenic Intergenic -80893 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 362.333-14 chr7 150448404 150448799 + 1.83333 NA TTS (NR_034033) TTS (NR_034033) -2029 NM_175571 155038 Hs.647121 NM_175571 ENSG00000171115 GIMAP8 IAN-9|IAN6|IAN9|IANT GTPase, IMAP family member 8 protein-coding 270.667-13 chr21 30565185 30565505 + 1.83333 NA Intergenic Intergenic -4032 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 328.166-7 chr5 5638918 5639258 + 1.83333 NA Intergenic Intergenic 216411 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 503.999 chr7 90913489 90913797 + 1.83333 NA intron (NM_012395, intron 6 of 13) LTR48B|LTR|ERV1 203827 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 226.833-7 chr11 100563243 100563433 + 1.83333 NA Intergenic Intergenic -123950 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 285.666-9 chr2 218963723 218963928 + 1.83333 NA Intergenic Intergenic 4159 NM_003936 8941 Hs.158460 NM_003936 ENSG00000171450 CDK5R2 NCK5AI|P39|p39nck5ai cyclin dependent kinase 5 regulatory subunit 2 protein-coding 214.334-2 chr1 145996603 145996784 + 1.83333 NA promoter-TSS (NM_001313972) promoter-TSS (NM_001313972) -114 NM_006472 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 298.333-7 chr14 22906430 22906734 + 1.83333 NA intron (NM_001352762, intron 3 of 12) Tigger3b|DNA|TcMar-Tigger 12567 NM_001352764 55147 Hs.4997 NM_018107 ENSG00000100461 RBM23 CAPERbeta|PP239|RNPC4 RNA binding motif protein 23 protein-coding 315.333-5 chr10 18685806 18686058 + 1.83333 NA Intergenic MER5A|DNA|hAT-Charlie 26501 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 323.666-4 chr12 78181506 78181695 + 1.83333 NA intron (NM_001024383, intron 30 of 39) intron (NM_001024383, intron 30 of 39) 178146 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 449 chr18 45664838 45665548 + 1.83333 NA intron (NM_007163, intron 11 of 19) intron (NM_007163, intron 11 of 19) 49717 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 414.499 chr8 87746061 87746425 + 1.83333 NA Intergenic L1MEf|LINE|L1 127772 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 379.666-5 chr4 100533394 100533731 + 1.83333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -15540 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 438-10 chr8 135619411 135619777 + 1.83333 NA intron (NM_006558, intron 7 of 8) MIR|SINE|MIR 162138 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 367.666-5 chr2 112054146 112054532 + 1.83333 NA promoter-TSS (NM_032824) promoter-TSS (NM_032824) -930 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 316.333-19 chr5 112145423 112145630 + 1.83333 NA intron (NM_001347887, intron 23 of 23) L3b|LINE|CR1 -15000 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 462.001-3 chr14 58263606 58264016 + 1.83333 NA intron (NR_038123, intron 6 of 9) intron (NR_038123, intron 6 of 9) 18968 NM_002788 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 284.166-5 chr17 63096185 63096404 + 1.83333 NA intron (NM_025185, intron 3 of 25) L1MEj|LINE|L1 130059 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 759-2 chr6 97059266 97060094 + 1.83333 NA intron (NR_136579, intron 2 of 7) intron (NR_136579, intron 2 of 7) 49604 NM_001323264 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 688.834-4 chr18 2600841 2601432 + 1.83333 NA intron (NM_006101, intron 12 of 16) intron (NM_006101, intron 12 of 16) 29579 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 505.166-3 chr6 150801945 150802370 + 1.83333 NA intron (NM_001329803, intron 4 of 13) intron (NM_001329803, intron 4 of 13) -63522 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 219-17 chr2 70304026 70304429 + 1.83333 NA Intergenic AluSx1|SINE|Alu -2160 NM_032822 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 360.999-3 chr8 124117452 124117690 + 1.83333 NA intron (NM_001039112, intron 39 of 40) intron (NM_001039112, intron 39 of 40) 53951 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 398.667-3 chr17 80984630 80985025 + 1.83333 NA Intergenic Intergenic -7014 NM_024591 79643 Hs.514560 NM_024591 ENSG00000176108 CHMP6 VPS20 charged multivesicular body protein 6 protein-coding 624.667-2 chr3 141192067 141192748 + 1.83333 NA Intergenic Intergenic -39418 NM_152282 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 417.666-5 chr9 90660428 90660678 + 1.83333 NA Intergenic L1PA13|LINE|L1 -17729 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 460.001-2 chr2 237153766 237154486 + 1.83333 NA Intergenic MIRc|SINE|MIR 68237 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 410-13 chr5 144171068 144171319 + 1.83333 NA promoter-TSS (NM_030799) promoter-TSS (NM_030799) 320 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 401.667-8 chr2 71544983 71545400 + 1.83333 NA intron (NM_001130985, intron 17 of 54) L2c|LINE|L2 78492 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 283.834-6 chr6 40856416 40856582 + 1.83333 NA Intergenic Intergenic 166781 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 207.667-43 chr7 85225857 85226052 + 1.83333 NA Intergenic Intergenic -104023 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 702.501 chr10 105797171 105797751 + 1.83333 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 22872 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 409.333-6 chr4 106062370 106062718 + 1.83333 NA intron (NM_001290768, intron 26 of 26) intron (NM_001290768, intron 26 of 26) -40066 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 258.666 chr1 151999070 151999346 + 1.83333 NA Intergenic Intergenic -5349 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 437.334-3 chr19 6631802 6632452 + 1.83333 NA Intergenic Tigger2|DNA|TcMar-Tigger 38031 NM_172014 8740 Hs.129708 NM_003807 ENSG00000125735 TNFSF14 CD258|HVEML|LIGHT|LTg TNF superfamily member 14 protein-coding 442.167-3 chr6 51748828 51749380 + 1.83333 NA intron (NM_138694, intron 57 of 66) intron (NM_138694, intron 57 of 66) 127234 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 386.666-4 chr18 9136240 9136483 + 1.83333 NA promoter-TSS (NM_015208) promoter-TSS (NM_015208) 359 NR_110772 101927275 Hs.656442 NR_110771 ENSG00000266053 NDUFV2-AS1 - NDUFV2 antisense RNA 1 ncRNA 358.5-7 chr14 44991634 44991887 + 1.83333 NA intron (NR_131765, intron 1 of 19) intron (NR_131765, intron 1 of 19) 29570 NR_131765 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 379.166-3 chr4 159175750 159176005 + 1.83333 NA intron (NM_001351724, intron 1 of 30) intron (NM_001351724, intron 1 of 30) -46983 NR_037459 100500881 NR_037459 ENSG00000264105 MIR3688-1 MIR3688|mir-3688-1 microRNA 3688-1 ncRNA 213.333-47 chr8 134781325 134781684 + 1.83333 NA Intergenic Intergenic 19103 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 301.333-11 chr17 72726816 72727284 + 1.83333 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -86578 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 366-18 chr9 104523041 104523473 + 1.83333 NA Intergenic Intergenic 3952 NM_001001919 138804 Hs.553601 NM_001001919 ENSG00000148136 OR13C4 HSHTPCRX17|HTPCRX17|OR2K1|OR37F|OR9-7 olfactory receptor family 13 subfamily C member 4 protein-coding 256.5-9 chr13 69336425 69336723 + 1.83333 NA Intergenic MER65-int|LTR|ERV1 114228 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 267.5-34 chr4 152640534 152640722 + 1.83333 NA intron (NM_152680, intron 6 of 6) intron (NM_152680, intron 6 of 6) 39369 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 250.833-14 chr7 31256063 31256314 + 1.83333 NA Intergenic L1MA9|LINE|L1 84538 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 345.833-7 chr15 58580659 58580958 + 1.83333 NA Intergenic Intergenic -82073 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 173.167-4 chr1 201126819 201127083 + 1.83333 NA Intergenic Intergenic -11579 NM_001270601 647219 Hs.143949 NM_001270601 ENSG00000232237 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 258.667-23 chr6 39517847 39518162 + 1.83333 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -86614 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 570.666-2 chr2 204367191 204367778 + 1.83333 NA Intergenic Intergenic -177991 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 318.666-2 chr1 222791348 222791555 + 1.83333 NA Intergenic L2c|LINE|L2 -23588 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 349.833-5 chr2 117129292 117129611 + 1.83333 NA Intergenic MER39|LTR|ERV1 -685240 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 316.666 chr15 70816776 70817105 + 1.83333 NA Intergenic Intergenic -36299 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 757.5-3 chr8 27465325 27465999 + 1.83333 NA intron (NM_000742, intron 5 of 6) AluSc|SINE|Alu 13599 NM_001347708 1135 Hs.57718 NM_000742 ENSG00000120903 CHRNA2 - cholinergic receptor nicotinic alpha 2 subunit protein-coding 890.501 chr10 28663401 28664545 + 1.83333 NA Intergenic Intergenic -13548 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 467.499 chr3 152508632 152509097 + 1.83333 NA Intergenic L3|LINE|CR1 -167874 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 345.167-5 chr13 97855258 97855900 + 1.83333 NA Intergenic Intergenic -98096 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 430.834-2 chr2 36059633 36059981 + 1.83333 NA Intergenic (TAAG)n|Simple_repeat|Simple_repeat 295763 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 388.333-7 chr17 20063932 20064338 + 1.83333 NA intron (NM_001243439, intron 1 of 14) intron (NM_001243439, intron 1 of 14) -22887 NM_152904 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 378.833-3 chr12 51352077 51352487 + 1.83333 NA 3' UTR (NM_007210, exon 12 of 12) 3' UTR (NM_007210, exon 12 of 12) -5603 NM_001971 1990 Hs.348395 NM_001971 ENSG00000139610 CELA1 ELA1 chymotrypsin like elastase 1 protein-coding 334.167-7 chr5 78319487 78319866 + 1.83333 NA Intergenic Intergenic -24921 NM_003664 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 286.166-3 chr9 100244775 100245025 + 1.83333 NA intron (NR_134606, intron 7 of 16) MIRc|SINE|MIR 107671 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 629.666 chr1 167803308 167803784 + 1.83333 NA Intergenic Intergenic 81564 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 769.667 chr19 15584372 15585048 + 1.83333 NA Intergenic CpG -30508 NM_007253 11283 Hs.268554 NM_007253 ENSG00000186526 CYP4F8 CPF8|CYPIVF8 cytochrome P450 family 4 subfamily F member 8 protein-coding 462.666-4 chr2 62691342 62691594 + 1.83333 NA intron (NM_001142615, intron 1 of 22) MLT1J|LTR|ERVL-MaLR -14156 NM_001354212 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 373.166-5 chr4 186469008 186469229 + 1.83333 NA intron (NR_033901, intron 1 of 6) MER4D1|LTR|ERV1 31940 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 543.501 chr5 164303714 164304374 + 1.83333 NA Intergenic Intergenic 163358 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 186.166-2 chr12 115710211 115710347 + 1.83333 NA Intergenic Intergenic 438375 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 388.666-2 chr8 30083033 30083471 + 1.83333 NA promoter-TSS (NM_001284239) promoter-TSS (NM_001284239) -44 NM_001284239 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 386.999 chr1 28602996 28603246 + 1.83333 NA 3' UTR (NM_001135218, exon 6 of 6) 3' UTR (NM_001135218, exon 6 of 6) 10626 NM_001193532 115273 Hs.652321 NM_152304 ENSG00000188060 RAB42 - RAB42, member RAS oncogene family protein-coding 279.166 chr14 66306404 66306803 + 1.83333 NA Intergenic Intergenic -179768 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 382.833 chr1 22130866 22131245 + 1.83333 NA intron (NM_030761, intron 1 of 4) MIRb|SINE|MIR 12042 NM_030761 54361 Hs.25766 NM_030761 ENSG00000162552 WNT4 SERKAL|WNT-4 Wnt family member 4 protein-coding 176.333 chr10 14810734 14811071 + 1.83333 NA Intergenic Intergenic 27135 NM_001029954 441549 Hs.559067 NM_001029954 ENSG00000185267 CDNF ARMETL1 cerebral dopamine neurotrophic factor protein-coding 269.499 chr6 35930076 35930261 + 1.83333 NA Intergenic Charlie2a|DNA|hAT-Charlie -8988 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 457.833-4 chr20 53829416 53829923 + 1.83333 NA Intergenic Intergenic 46040 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 177.833-19 chr2 50872683 50872785 + 1.83333 NA intron (NM_001330093, intron 4 of 22) AluJr|SINE|Alu 159398 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 654.332 chr1 190436495 190437366 + 1.83333 NA intron (NM_199051, intron 2 of 7) L2c|LINE|L2 39080 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 248.666-8 chr8 23277385 23277628 + 1.83333 NA Intergenic Intergenic -10586 NM_001301650 203069 Hs.458644 NM_001136108 ENSG00000104679 R3HCC1 - R3H domain and coiled-coil containing 1 protein-coding 291.167-7 chr19 58348520 58348745 + 1.83333 NA intron (NM_130786, intron 6 of 7) intron (NM_130786, intron 6 of 7) -3338 NR_015380 503538 Hs.709582 NR_015380 ENSG00000268895 A1BG-AS1 A1BG-AS|A1BGAS|NCRNA00181 A1BG antisense RNA 1 ncRNA 391.666-3 chr14 63632749 63633058 + 1.83333 NA intron (NM_080666, intron 1 of 2) MIR|SINE|MIR 8968 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 235.833-7 chr16 11705036 11705197 + 1.83333 NA intron (NM_001303447, intron 5 of 12) AluSz|SINE|Alu 36661 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 195.833-12 chr14 78769995 78770202 + 1.83333 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 366379 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 387.833-4 chr3 186821668 186822053 + 1.83333 NA intron (NR_125409, intron 3 of 3) FRAM|SINE|Alu 3661 NR_125409 102724699 Hs.518476 NR_125409 ENSG00000232233 LINC02043 - long intergenic non-protein coding RNA 2043 ncRNA 294.999 chr1 93815569 93815748 + 1.83333 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -31174 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 381-13 chr5 10597778 10598179 + 1.83333 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 33908 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 233-35 chr8 65439431 65439657 + 1.83333 NA Intergenic MIRb|SINE|MIR 123122 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 646.333 chr17_KI270729v1_random 984 1811 + 1.83333 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 546.5 chr13 60473340 60474099 + 1.83333 NA intron (NM_030794, intron 5 of 13) LTR13|LTR|ERVK 76499 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 236.5-20 chr2 142171530 142171767 + 1.83333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -39947 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 238.166 chr11 15208031 15208191 + 1.83333 NA intron (NM_001042536, intron 7 of 12) intron (NM_001042536, intron 7 of 12) 59009 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 165.834-8 chr5 79221390 79221559 + 1.83333 NA Intergenic Intergenic -14657 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 352.333-13 chr8 106577531 106577756 + 1.83333 NA intron (NM_018002, intron 3 of 15) AluSx1|SINE|Alu -80165 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 327.833-9 chr4 63962930 63963147 + 1.83333 NA Intergenic Intergenic 446412 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 254.833-15 chr21 28781579 28781939 + 1.83333 NA Intergenic MER77|LTR|ERVL 103608 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 217.5-22 chr5 130035047 130035248 + 1.83333 NA intron (NM_175856, intron 2 of 2) L2a|LINE|L2 130682 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 363.166-4 chr5 148212651 148213061 + 1.83333 NA intron (NM_001195290, intron 3 of 4) (TA)n|Simple_repeat|Simple_repeat 9814 NM_205841 404203 Hs.334274 NM_205841 ENSG00000178172 SPINK6 BUSI2|UNQ844 serine peptidase inhibitor, Kazal type 6 protein-coding 335.333-7 chr20 42297403 42297722 + 1.83333 NA intron (NM_133170, intron 12 of 31) L1MC4|LINE|L1 -387921 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 175.166 chr13 50411420 50411751 + 1.83333 NA intron (NR_109974, intron 3 of 6) intron (NR_109974, intron 3 of 6) 115864 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 469.333-2 chr17 34308790 34309129 + 1.83333 NA Intergenic L1ME3|LINE|L1 -10476 NM_005623 6355 Hs.271387 NM_005623 ENSG00000108700 CCL8 HC14|MCP-2|MCP2|SCYA10|SCYA8 C-C motif chemokine ligand 8 protein-coding 388.166-2 chr10 21330078 21330340 + 1.83333 NA Intergenic AluJr|SINE|Alu 42741 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 364.166 chr5 121833736 121834017 + 1.83333 NA Intergenic Intergenic -18006 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 392.166-2 chr18 56685678 56685891 + 1.83333 NA intron (NM_015285, intron 5 of 27) intron (NM_015285, intron 5 of 27) 34399 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 272.167-8 chr17 55744669 55745097 + 1.83333 NA Intergenic Intergenic -6168 NM_001330378 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 454.333-4 chr2 237092757 237093275 + 1.83333 NA intron (NM_198189, intron 5 of 8) intron (NM_198189, intron 5 of 8) 7127 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 331.333-4 chr14 60986468 60986783 + 1.83333 NA intron (NR_033344, intron 3 of 16) intron (NR_033344, intron 3 of 16) -4935 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 223.666-5 chr4 30556772 30556974 + 1.83333 NA Intergenic L2a|LINE|L2 -163496 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 373.167-3 chr11 8408162 8408708 + 1.83333 NA intron (NM_001352399, intron 11 of 11) MamRTE1|LINE|RTE-BovB -139648 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 312-19 chr5 11730081 11730329 + 1.83333 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -141139 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 409.5 chr1 93498435 93498991 + 1.83333 NA intron (NM_001024948, intron 1 of 13) intron (NM_001024948, intron 1 of 13) 50582 NM_001164473 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 627.166 chr1 178501698 178502230 + 1.83333 NA Intergenic Intergenic -11145 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 218.166 chr10 59141145 59141382 + 1.83333 NA Intergenic MLT1J|LTR|ERVL-MaLR 35201 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 275.834-2 chr1 183466464 183466696 + 1.83333 NA intron (NR_040063, intron 3 of 4) intron (NR_040063, intron 3 of 4) 5402 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 557.5-3 chr4 30514059 30514613 + 1.83333 NA Intergenic Intergenic -206033 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 360.333-9 chr5 27337448 27337763 + 1.83333 NA Intergenic Intergenic -134687 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 250.333-16 chr6 48165669 48165863 + 1.83333 NA Intergenic Intergenic -97077 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 496.166 chr10 32256576 32257039 + 1.83333 NA Intergenic Intergenic 90351 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 532.333-2 chr3 47522064 47522783 + 1.83333 NA Intergenic Intergenic -8711 NM_001031703 54859 Hs.311100 NM_017713 ENSG00000163832 ELP6 C3orf75|TMEM103 elongator acetyltransferase complex subunit 6 protein-coding 330.167-9 chr8 79165832 79166347 + 1.83333 NA Intergenic Intergenic -166099 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 198.167-31 chr9 27169788 27169945 + 1.83333 NA intron (NM_001290077, intron 4 of 21) intron (NM_001290077, intron 4 of 21) 60725 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 447.166 chr12 48367434 48367988 + 1.83333 NA Intergenic L1MA10|LINE|L1 -16465 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 410.999 chr6 35766723 35767065 + 1.83333 NA Intergenic Intergenic -9700 NR_104469 389383 Hs.259563 NM_207409 ENSG00000196748 CLPSL2 AAAL3045|C6orf126|UNQ3045|dJ510O8.5 colipase like 2 protein-coding 275.167-27 chr8 131538290 131538545 + 1.83333 NA Intergenic L3|LINE|CR1 -365676 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 332.667-8 chr2 43698833 43699144 + 1.83333 NA intron (NM_172069, intron 7 of 29) intron (NM_172069, intron 7 of 29) -22559 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 371.333-2 chr15 59188958 59189205 + 1.83333 NA intron (NM_004998, intron 17 of 27) AluJb|SINE|Alu -17762 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 345.333 chr10 116362405 116362702 + 1.83333 NA intron (NM_198515, intron 7 of 8) intron (NM_198515, intron 7 of 8) 38105 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 257.166-3 chr17 59220386 59220679 + 1.83333 NA promoter-TSS (NM_001165994) promoter-TSS (NM_001165994) 21 NM_182569 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 191.5-39 chr5 23108577 23108731 + 1.83333 NA Intergenic L1MA4A|LINE|L1 -255310 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 486.333-3 chr11 113397513 113397812 + 1.83333 NA intron (NM_178510, intron 6 of 7) intron (NM_178510, intron 6 of 7) 9883 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 365.667-5 chr19 18522196 18522514 + 1.83333 NA promoter-TSS (NM_006532) promoter-TSS (NM_006532) -285 NM_006532 8178 Hs.515260 NM_006532 ENSG00000105656 ELL C19orf17|ELL1|MEN|PPP1R68 elongation factor for RNA polymerase II protein-coding 355.834-5 chr16 85659550 85659986 + 1.83333 NA intron (NM_001278184, intron 7 of 14) intron (NM_001278184, intron 7 of 14) 29186 NM_016095 51659 Hs.433180 NM_016095 ENSG00000131153 GINS2 HSPC037|PSF2|Pfs2 GINS complex subunit 2 protein-coding 591.833 chr11 33113530 33114088 + 1.83333 NA intron (NM_001326, intron 3 of 20) FLAM_C|SINE|Alu 37659 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 257.333-22 chr6 25469757 25469925 + 1.83333 NA intron (NM_001173977, intron 9 of 36) AluJb|SINE|Alu -182374 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 300.5-5 chr13 96057828 96058039 + 1.83333 NA Intergenic L1MB2|LINE|L1 -4532 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 364.666-10 chr8 122144397 122144756 + 1.83333 NA Intergenic Intergenic 424068 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 391.666-2 chr14 45682563 45682822 + 1.83333 NA Intergenic L1MC5|LINE|L1 32910 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 282.167-4 chr12 12893390 12893580 + 1.83333 NA intron (NM_003979, intron 1 of 3) intron (NM_003979, intron 1 of 3) 2463 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 187.666-2 chr15 72118226 72118332 + 1.83333 NA promoter-TSS (NM_145204) promoter-TSS (NM_145204) -124 NM_001172111 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 496.999 chr11 32816577 32816895 + 1.83333 NA Intergenic Intergenic -13191 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 546.499 chr17 8991401 8991972 + 1.83333 NA Intergenic Intergenic -25974 NM_001251852 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 520.667-3 chr6 153946972 153947592 + 1.83333 NA Intergenic (TTTTA)n|Simple_repeat|Simple_repeat -63214 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 512.833-2 chr16 52492252 52492568 + 1.83333 NA intron (NM_001080430, intron 1 of 6) (AT)n|Simple_repeat|Simple_repeat 54733 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 742.499-3 chr8 85300579 85301233 + 1.83333 NA Intergenic Intergenic 40808 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 257.666-4 chr3 141115269 141115628 + 1.83333 NA intron (NM_080862, intron 2 of 2) MER102a|DNA|hAT-Charlie 64101 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 283.167-17 chr8 124147615 124147830 + 1.83333 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 23800 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 229.833-5 chr11 44632841 44632993 + 1.83333 NA Intergenic LTR78|LTR|ERV1 67254 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 311-8 chr2 16609780 16609971 + 1.83333 NA intron (NM_030797, intron 2 of 11) L3|LINE|CR1 55959 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 445-5 chr7 35035463 35035902 + 1.83333 NA intron (NM_015283, intron 1 of 21) intron (NM_015283, intron 1 of 21) 1803 NM_001366673 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 338.666-6 chr6 97570783 97571098 + 1.83333 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 265354 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 508.334-5 chr16 67493919 67494428 + 1.83333 NA Intergenic MER20|DNA|hAT-Charlie -10360 NM_001138 181 Hs.104633 NM_001138 ENSG00000159723 AGRP AGRT|ART|ASIP2 agouti related neuropeptide protein-coding 206.166-2 chr7 2887130 2887392 + 1.83333 NA Intergenic A-rich|Low_complexity|Low_complexity -42953 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 304-2 chr1 66182658 66182901 + 1.83333 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -132061 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 329.833-5 chr2 201775074 201775341 + 1.83333 NA intron (NM_020919, intron 1 of 33) intron (NM_020919, intron 1 of 33) 5726 NM_020919 57679 Hs.471096 NM_020919 ENSG00000003393 ALS2 ALS2CR6|ALSJ|IAHSP|PLSJ alsin Rho guanine nucleotide exchange factor ALS2 protein-coding 314 chr1 158121868 158122288 + 1.83333 NA Intergenic Intergenic 18562 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 563.167-2 chr9 35481324 35481844 + 1.83333 NA intron (NR_003581, intron 16 of 17) intron (NR_003581, intron 16 of 17) -8527 NM_001330740 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 288.166-4 chr5 64768771 64768955 + 1.83333 NA promoter-TSS (NM_001364478) promoter-TSS (NM_001364478) -55 NM_001297645 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 288.5-2 chr1 25487787 25487968 + 1.83333 NA intron (NM_018202, intron 8 of 10) MIR|SINE|MIR -55708 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 371.501-2 chrX 111099992 111100379 + 1.83333 NA intron (NM_001324326, intron 2 of 15) intron (NM_001324326, intron 2 of 15) -2974 NR_136748 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 363.333-9 chr8 16779503 16779984 + 1.83333 NA Intergenic Intergenic 222602 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 262.833-14 chr7 14690866 14691093 + 1.83333 NA intron (NM_001350717, intron 9 of 24) intron (NM_001350717, intron 9 of 24) 150471 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 676.167-2 chr20 4760346 4761206 + 1.83333 NA Intergenic CpG -20108 NR_024267 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 372.166-3 chr11 110982598 110982886 + 1.83333 NA Intergenic Intergenic 114576 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 242.833-4 chr11 18203703 18203978 + 1.83333 NA Intergenic L1M2|LINE|L1 -5298 NR_026541 494141 Hs.446327 NR_026541 ENSG00000189332 SLC25A51P4 - SLC25A51 pseudogene 4 pseudo 334.5-16 chr5 39360861 39361202 + 1.83333 NA intron (NM_001737, intron 1 of 10) L1ME4b|LINE|L1 3464 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 333-13 chr9 38246513 38246765 + 1.83333 NA Intergenic ERVL-E-int|LTR|ERVL -146063 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 347.999-3 chr6 152723381 152723826 + 1.83333 NA 3' UTR (NM_025107, exon 2 of 2) 3' UTR (NM_025107, exon 2 of 2) 25708 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 663.5 chr3 101707288 101707759 + 1.83333 NA Intergenic Intergenic -4911 NR_002941 285359 Hs.720825 NR_002941 PDCL3P4 - PDCL3 pseudogene 4 pseudo 302.5-16 chr7 82624356 82624541 + 1.83333 NA Intergenic Intergenic -180492 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 356.166-2 chr2 222693942 222694359 + 1.83333 NA intron (NM_058165, intron 3 of 5) intron (NM_058165, intron 3 of 5) 22492 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 293.834-6 chr4 83906182 83906428 + 1.83333 NA Intergenic Intergenic 370197 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 184.5-5 chr1 156684317 156684492 + 1.83333 NA Intergenic Intergenic -6997 NM_006617 10763 Hs.527971 NM_006617 ENSG00000132688 NES Nbla00170 nestin protein-coding 369.833-7 chr7 36366987 36367501 + 1.83333 NA promoter-TSS (NM_001300956) promoter-TSS (NM_001300956) -4 NM_015314 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 367.833 chr1 42236469 42236814 + 1.83333 NA intron (NM_001198850, intron 4 of 12) L1ME1|LINE|L1 -71896 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 217.166-3 chr18 4171645 4171832 + 1.83333 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -92864 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 785.833 chr6 52162696 52163721 + 1.83333 NA Intergenic Intergenic -12185 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 591.167-4 chr9 92325115 92325926 + 1.83333 NA promoter-TSS (NR_046106) promoter-TSS (NR_046106) 52 NM_001286969 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 199.833-24 chr5 63661256 63661396 + 1.83333 NA Intergenic L1MC4|LINE|L1 300966 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1338.83 chr10 93991585 93993255 + 1.83333 NA Intergenic Intergenic -1511 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 190-5 chr10 20514335 20514525 + 1.83333 NA Intergenic Intergenic -37540 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 320.5-21 chrX 94288468 94288787 + 1.83333 NA Intergenic Intergenic 614421 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 197.667-26 chr18 51843629 51843762 + 1.83333 NA Intergenic Intergenic 451653 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 385.666-3 chr2 171573601 171573924 + 1.83333 NA Intergenic Intergenic 51288 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 268.333-3 chr11 32118589 32118972 + 1.83333 NA Intergenic AluJr|SINE|Alu 25132 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 456.166 chr5 128716588 128716938 + 1.83333 NA Intergenic MER2|DNA|TcMar-Tigger -178518 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 249.833-20 chrX 107433629 107433997 + 1.83333 NA Intergenic Intergenic -88637 NM_032428 84443 Hs.496546 NM_032428 ENSG00000147234 FRMPD3 - FERM and PDZ domain containing 3 protein-coding 404.5-2 chr1 111711226 111711730 + 1.83333 NA intron (NM_001370216, intron 7 of 7) intron (NM_001370216, intron 7 of 7) 27917 NM_019099 55924 Hs.193406 NM_019099 ENSG00000197852 INKA2 C1orf183|FAM212B inka box actin regulator 2 protein-coding 360.333-5 chr2 78841673 78841922 + 1.83333 NA Intergenic Intergenic -183905 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 248-32 chr5 88141923 88142080 + 1.83333 NA Intergenic Intergenic 126844 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 232.667-17 chr18 9218032 9218162 + 1.83333 NA intron (NM_001204056, intron 6 of 11) intron (NM_001204056, intron 6 of 11) 80534 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 239.333-19 chr21 29196213 29196450 + 1.83333 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 2837 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 259-5 chr1 209988686 209988859 + 1.83333 NA intron (NM_001146261, intron 3 of 9) L1MEc|LINE|L1 50555 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 233.333-14 chr18 4589192 4589333 + 1.83333 NA Intergenic Intergenic -133955 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 293.999-3 chr3 98062159 98062410 + 1.83333 NA Intergenic Intergenic -24889 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 222.166 chr4 139030538 139030710 + 1.83333 NA intron (NM_012118, intron 1 of 2) intron (NM_012118, intron 1 of 2) 14843 NM_012118 25819 Hs.639842 NM_012118 ENSG00000151014 NOCT CCR4L|CCRN4L|Ccr4c|NOC nocturnin protein-coding 305.167-4 chr11 91514102 91514375 + 1.83333 NA Intergenic Intergenic -645036 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 254.166-4 chr20 52243965 52244283 + 1.83333 NA Intergenic Intergenic -52139 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 367.333-8 chr8 59878094 59878409 + 1.83333 NA Intergenic L1MA3|LINE|L1 403149 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 256.5-25 chr9 120630437 120630660 + 1.83333 NA intron (NM_001080497, intron 2 of 5) L1MA5|LINE|L1 -50378 NM_001272039 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 346.333-8 chr6 70222696 70223003 + 1.83333 NA intron (NM_001851, intron 37 of 37) intron (NM_001851, intron 37 of 37) 60348 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 444.166-3 chr12 81642809 81643172 + 1.83333 NA intron (NM_001220474, intron 2 of 30) (TATA)n|Simple_repeat|Simple_repeat -44619 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 214-10 chr12 11647561 11647776 + 1.83333 NA Intergenic Intergenic -2186 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 178.833-5 chr10 118793038 118793165 + 1.83333 NA Intergenic Intergenic -38131 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 385-9 chr7 9598774 9599183 + 1.83333 NA Intergenic L1MC4|LINE|L1 -35292 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 475-5 chr8 62629293 62629838 + 1.83333 NA intron (NM_001304533, intron 3 of 6) MIR|SINE|MIR -348296 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 359.333-9 chr22 19682458 19682925 + 1.83333 NA Intergenic L1MDa|LINE|L1 -31812 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 211.834-3 chr11 14554099 14554345 + 1.83333 NA intron (NM_148976, intron 2 of 10) L1MD2|LINE|L1 -33777 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 331.166 chr2 117100851 117101104 + 1.83333 NA Intergenic Intergenic -713714 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 360-4 chr15 65857599 65858040 + 1.83333 NA Intergenic MER20B|DNA|hAT-Charlie -11672 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 216.834-11 chr6 38875908 38876066 + 1.83333 NA intron (NM_001371, intron 52 of 91) intron (NM_001371, intron 52 of 91) 77120 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 472.5-3 chr19 3706059 3706477 + 1.83333 NA Intergenic Intergenic -2116 NM_001267560 27134 Hs.25527 NM_014428 ENSG00000105289 TJP3 ZO-3|ZO3 tight junction protein 3 protein-coding 271.5-27 chr4 38179105 38179401 + 1.83333 NA Intergenic Intergenic 59299 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 252.833-9 chr20 56248103 56248367 + 1.83333 NA promoter-TSS (NM_019888) promoter-TSS (NM_019888) -497 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 302-10 chr2 176632769 176633039 + 1.83333 NA intron (NR_040001, intron 2 of 2) intron (NR_040001, intron 2 of 2) 4670 NR_040001 375295 Hs.636452 NR_040001 LINC01116 TALNEC2 long intergenic non-protein coding RNA 1116 ncRNA 218.5-23 chr2 44010924 44011069 + 1.83333 NA Intergenic L2|LINE|L2 -15007 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 303.333-8 chr2 177385064 177385481 + 1.83333 NA intron (NR_026966, intron 1 of 8) AluJr4|SINE|Alu 7419 NR_026966 100130691 Hs.707723 NM_182585 ENSG00000213963 LOC100130691 - uncharacterized LOC100130691 ncRNA 301.666-7 chr12 22416834 22417046 + 1.83333 NA Intergenic Intergenic -82226 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 374.999-3 chr7 77993994 77994223 + 1.83333 NA Intergenic AluJo|SINE|Alu 153978 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 392.333-3 chr3 157135782 157136009 + 1.83333 NA Intergenic Intergenic -12893 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 359.333-14 chr7 140002512 140002732 + 1.83333 NA intron (NM_001366537, intron 8 of 11) intron (NM_001366537, intron 8 of 11) 61099 NR_130117 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 488.166-3 chr4 92223344 92223637 + 1.83333 NA Intergenic Intergenic 53812 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 384.667-4 chr2 186110192 186110510 + 1.83333 NA Intergenic L1MA7|LINE|L1 -24034 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 324.666 chr10 55636556 55636857 + 1.83333 NA Intergenic L1MEf|LINE|L1 -8764 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 220.5-6 chr11 63639134 63639353 + 1.83333 NA intron (NM_015459, intron 8 of 12) intron (NM_015459, intron 8 of 12) -24774 NM_001128203 11145 Hs.502775 NM_007069 ENSG00000176485 PLAAT3 AdPLA|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3 phospholipase A and acyltransferase 3 protein-coding 276-10 chr16 86517656 86517915 + 1.83333 NA Intergenic MER5A|DNA|hAT-Charlie 7258 NM_001451 2294 Hs.155591 NM_001451 ENSG00000103241 FOXF1 ACDMPV|FKHL5|FREAC1 forkhead box F1 protein-coding 331.167-2 chr10 35038670 35039015 + 1.83333 NA intron (NM_003591, intron 9 of 20) intron (NM_003591, intron 9 of 20) 35441 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 163.833-12 chr15 47731201 47731301 + 1.83333 NA intron (NM_153618, intron 1 of 18) intron (NM_153618, intron 1 of 18) 12762 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 336.334-7 chr3 38176615 38176926 + 1.83333 NA intron (NM_005109, intron 1 of 17) intron (NM_005109, intron 1 of 17) 11233 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 352.167-9 chr21 18069040 18069632 + 1.83333 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) 151996 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 236.833-18 chr4 44445126 44445381 + 1.83333 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 3556 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 414.167-2 chr1 208323710 208324059 + 1.83333 NA Intergenic Intergenic -79500 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 277.833-9 chr2 57255938 57256216 + 1.83333 NA Intergenic Intergenic -651574 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 352.5-2 chr10 106529344 106529740 + 1.83333 NA Intergenic Intergenic 389377 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 319.167-9 chr2 28459633 28459912 + 1.83333 NA Intergenic LTR56|LTR|ERV1 -36288 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 747.166 chr5 134904888 134905509 + 1.83333 NA promoter-TSS (NM_032151) promoter-TSS (NM_032151) 78 NM_032151 84105 Hs.710014 NM_032151 ENSG00000132570 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding 340.333 chr1 34080311 34080700 + 1.83333 NA intron (NM_052896, intron 2 of 69) L1MEj|LINE|L1 84769 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 264.166 chr14 83851592 83851922 + 1.83333 NA Intergenic Intergenic 1209125 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 345.166-4 chr3 130708429 130708949 + 1.83333 NA intron (NM_014602, intron 9 of 19) intron (NM_014602, intron 9 of 19) 38140 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 220.166-2 chr12 8895133 8895351 + 1.83333 NA Intergenic L1ME3B|LINE|L1 -19267 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 238.666-12 chrX 50785743 50785928 + 1.83333 NA intron (NR_027121, intron 1 of 9) L1ME1|LINE|L1 28209 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 297.833-5 chr19 12631258 12631610 + 1.83333 NA 3' UTR (NM_153358, exon 4 of 4) 3' UTR (NM_153358, exon 4 of 4) 20514 NM_153358 163049 Hs.720677 NM_153358 ENSG00000173875 ZNF791 - zinc finger protein 791 protein-coding 500.166-3 chr8 124449666 124450107 + 1.83333 NA promoter-TSS (NM_017956) promoter-TSS (NM_017956) -934 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 257.333-4 chr1 231291097 231291523 + 1.83333 NA Intergenic Intergenic 46542 NM_175876 149371 Hs.356198 NM_175876 ENSG00000116903 EXOC8 EXO84|Exo84p|SEC84 exocyst complex component 8 protein-coding 280.333-17 chr2 97807889 97808145 + 1.83333 NA intron (NM_015348, intron 19 of 40) Tigger4b|DNA|TcMar-Tigger 73611 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 598.333 chr2 100610176 100610793 + 1.83333 NA Intergenic Intergenic 6745 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 228-25 chr2 99806826 99807003 + 1.83333 NA intron (NM_001025108, intron 7 of 23) X9_LINE|LINE|L1 298669 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 589.666 chr17 40013360 40013964 + 1.83333 NA Intergenic AluSx|SINE|Alu -1778 NM_172220 1440 Hs.2233 NM_000759 ENSG00000108342 CSF3 C17orf33|CSF3OS|GCSF colony stimulating factor 3 protein-coding 746.001 chr3 14203222 14203995 + 1.83333 NA Intergenic Intergenic 24791 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 399.166-3 chr4 44512485 44512738 + 1.83333 NA Intergenic Intergenic -63802 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 341.167-6 chr14 64631889 64632211 + 1.83333 NA Intergenic MER63B|DNA|hAT-Blackjack -72374 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 304.166-4 chr8 42767984 42768240 + 1.83333 NA intron (NM_004198, intron 1 of 5) intron (NM_004198, intron 1 of 5) 674 NM_004198 8973 Hs.103128 NM_004198 ENSG00000147434 CHRNA6 CHNRA6 cholinergic receptor nicotinic alpha 6 subunit protein-coding 384.333-7 chr8 113390943 113391255 + 1.83333 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) -13947 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 241.333-31 chr6 46875985 46876364 + 1.83333 NA intron (NM_001098518, intron 10 of 20) intron (NM_001098518, intron 10 of 20) -27297 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 422.833-3 chr16 58354483 58354853 + 1.83333 NA Intergenic L1MA4A|LINE|L1 -37803 NM_001126130 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 210.667-25 chr2 1769700 1769981 + 1.83333 NA Intergenic Intergenic -25325 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 399.5-8 chr8 59064222 59064529 + 1.83333 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 54772 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 433.5-2 chr1 15923862 15924328 + 1.83333 NA intron (NM_015001, intron 10 of 14) intron (NM_015001, intron 10 of 14) 52037 NM_001242884 7709 Hs.433764 NM_003443 ENSG00000116809 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 309.833-3 chr15 66321002 66321350 + 1.83333 NA intron (NM_001323944, intron 9 of 16) intron (NM_001323944, intron 9 of 16) 26166 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 454.833-3 chr20 18904628 18905017 + 1.83333 NA Intergenic Intergenic -74619 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 293.666-6 chr6 20534216 20534393 + 1.83333 NA promoter-TSS (NM_017774) promoter-TSS (NM_017774) -153 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 211-39 chr5 36607697 36607850 + 1.83333 NA intron (NM_004172, intron 1 of 9) intron (NM_004172, intron 1 of 9) 1167 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 228.5-11 chr18 60007100 60007300 + 1.83333 NA Intergenic MIRb|SINE|MIR 107204 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 207.666 chr15 57772444 57772679 + 1.83333 NA Intergenic L1ME3F|LINE|L1 65847 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 780-5 chr5 140827453 140828526 + 1.83333 NA promoter-TSS (NM_018909) promoter-TSS (NM_018909) 29 NM_018909 56142 Hs.199343 NM_018909 ENSG00000081842 PCDHA6 CNR2|CNRN2|CNRS2|CRNR2|PCDH-ALPHA6 protocadherin alpha 6 protein-coding 391.666-5 chr3 71436664 71437027 + 1.83333 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) 105244 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 563.334-4 chr5 150001462 150002077 + 1.83333 NA intron (NM_014983, intron 1 of 19) intron (NM_014983, intron 1 of 19) 1030 NM_014983 22993 Hs.719189 NM_014983 ENSG00000113716 HMGXB3 HMGX3|SMF HMG-box containing 3 protein-coding 224.666-3 chr2 18122532 18122717 + 1.83333 NA Intergenic MIRb|SINE|MIR 243957 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 446-2 chr11 93694106 93694551 + 1.83333 NA intron (NM_033395, intron 12 of 29) Tigger7|DNA|TcMar-Tigger -27186 NR_002569 619383 Hs.660668 NR_002569 ENSG00000254911 SCARNA9 Z32|mgU2-19/30 small Cajal body-specific RNA 9 ncRNA 241.666-6 chr21 22390400 22390539 + 1.83333 NA Intergenic L1M4|LINE|L1 291852 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 357.5-3 chr12 1455633 1455939 + 1.83333 NA intron (NR_027948, intron 19 of 19) intron (NR_027948, intron 19 of 19) -44705 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 314.166-2 chr15 60449984 60450202 + 1.83333 NA intron (NR_147171, intron 9 of 16) intron (NR_147171, intron 9 of 16) 29049 NR_147171 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 392.834-4 chr5 30647736 30648243 + 1.83333 NA Intergenic AluY|SINE|Alu -545697 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 212-50 chrX 43557822 43558066 + 1.83333 NA Intergenic Intergenic -96963 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 205.167-17 chr3 50274218 50274491 + 1.83333 NA intron (NM_001005914, intron 11 of 17) intron (NM_001005914, intron 11 of 17) 1118 NR_106932 102465526 NR_106932 ENSG00000283848 MIR6872 hsa-mir-6872 microRNA 6872 ncRNA 381.166-4 chr5 98750861 98751118 + 1.83333 NA Intergenic THE1D|LTR|ERVL-MaLR -17643 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 201.833 chr1 151537133 151537343 + 1.83333 NA exon (NM_020770, exon 21 of 21) exon (NM_020770, exon 21 of 21) -3071 NM_001126337 7286 Hs.489922 NM_020127 ENSG00000143367 TUFT1 - tuftelin 1 protein-coding 288.833-12 chr4 136864545 136864997 + 1.83333 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -328985 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 368.833-4 chr4 141680735 141681173 + 1.83333 NA intron (NR_037840, intron 2 of 7) intron (NR_037840, intron 2 of 7) 44371 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 443-2 chr14 61296661 61297376 + 1.83333 NA Intergenic Intergenic -15680 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 217.834-5 chr8 115227364 115227784 + 1.83333 NA Intergenic AluSc8|SINE|Alu 440439 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 415.333-3 chr14 70752369 70752775 + 1.83333 NA intron (NM_033141, intron 3 of 12) intron (NM_033141, intron 3 of 12) 30880 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 256.667-2 chr1 175921386 175921660 + 1.83333 NA Intergenic LTR49|LTR|ERV1 44180 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 255.666-5 chr5 38757736 38757953 + 1.83333 NA intron (NR_109951, intron 2 of 3) MIR3|SINE|MIR -37571 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 240.333-17 chr4 93390641 93390899 + 1.83333 NA intron (NM_001286838, intron 7 of 14) (TA)n|Simple_repeat|Simple_repeat -437983 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 168-28 chr2 143395931 143396117 + 1.83333 NA intron (NM_018460, intron 6 of 13) MamRTE1|LINE|RTE-BovB 266605 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 253.5-24 chr4 15893839 15894148 + 1.83333 NA Intergenic L1ME3A|LINE|L1 44747 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 1012-2 chr5 149636359 149637391 + 1.83333 NA Intergenic MIRb|SINE|MIR 55377 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 794.167 chr11 62542695 62543746 + 1.83333 NA intron (NM_024060, intron 1 of 5) intron (NM_024060, intron 1 of 5) 2444 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 206.5-24 chr17 63195321 63195496 + 1.83333 NA intron (NM_025185, intron 5 of 25) L2a|LINE|L2 229173 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 595.667-2 chr15 49421855 49422392 + 1.83333 NA TTS (NM_001330293) TTS (NM_001330293) -1119 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 298.834 chr10 44867947 44868226 + 1.83333 NA intron (NR_033842, intron 2 of 7) L1ME1|LINE|L1 -43230 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 166.666 chr12 63080710 63080811 + 1.83333 NA Intergenic Intergenic 72050 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 214-38 chr3 68005983 68006136 + 1.83333 NA intron (NM_213609, intron 1 of 4) intron (NM_213609, intron 1 of 4) 1812 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 471.499 chr14 87887925 87888346 + 1.83333 NA Intergenic Intergenic 105047 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 260.166-5 chr2 123952401 123952739 + 1.83333 NA Intergenic L1MD|LINE|L1 72604 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 167.5 chr1 68384441 68384540 + 1.83333 NA Intergenic Intergenic 65464 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 188.333-9 chr11 76396203 76396376 + 1.83333 NA intron (NM_001347884, intron 1 of 1) intron (NM_001347884, intron 1 of 1) 14966 NM_001347885 100506127 Hs.503319 NM_001013634 ENSG00000179240 GVQW3 - GVQW motif containing 3 protein-coding 448.166 chr22 31995023 31995273 + 1.83333 NA intron (NR_149128, intron 4 of 4) intron (NR_149128, intron 4 of 4) 24325 NR_149128 105372999 Hs.512525 NR_149128 LINC02558 - long intergenic non-protein coding RNA 2558 ncRNA 428.666-2 chr15 100398648 100398929 + 1.83333 NA intron (NR_120374, intron 1 of 4) L1ME3A|LINE|L1 25849 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 317.166-5 chr2 124760616 124760844 + 1.83333 NA intron (NM_130773, intron 14 of 23) intron (NM_130773, intron 14 of 23) 735443 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 462.5-10 chr6 133952598 133953435 + 1.83333 NA promoter-TSS (NM_004865) promoter-TSS (NM_004865) -208 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 454.167 chr10 22003528 22004007 + 1.83333 NA promoter-TSS (NM_022365) promoter-TSS (NM_022365) -37 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 350.333-9 chr7 95506631 95507021 + 1.83333 NA intron (NM_145872, intron 2 of 2) HAL1|LINE|L1 20883 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 221.5-21 chr5 31240885 31241148 + 1.83333 NA intron (NM_001362435, intron 1 of 10) LTR78B|LTR|ERV1 47330 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 455.999-2 chr4 154731622 154731893 + 1.83333 NA Intergenic Intergenic -9084 NM_001301645 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 346.166-5 chr4 90069759 90070090 + 1.83333 NA Intergenic MIR|SINE|MIR -57609 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 315.834-5 chr4 62644572 62644842 + 1.83333 NA Intergenic L1MC|LINE|L1 -482942 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 282.167-15 chr6 155085678 155086021 + 1.83333 NA Intergenic Intergenic -4440 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 229.167-17 chr5 93576802 93577016 + 1.83333 NA intron (NR_109818, intron 1 of 6) intron (NR_109818, intron 1 of 6) 4411 NR_109822 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 831.166 chr9 35096279 35097144 + 1.83333 NA promoter-TSS (NM_152850) promoter-TSS (NM_152850) -110 NM_152850 84720 Hs.522099 NM_032634 ENSG00000165282 PIGO HPMRS2 phosphatidylinositol glycan anchor biosynthesis class O protein-coding 410.833-6 chr8 117129677 117130049 + 1.83333 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -5132 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 239.667-7 chr10 32886062 32886308 + 1.83333 NA Intergenic L1M4c|LINE|L1 15287 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 219.5-20 chr3 190710579 190710777 + 1.83333 NA Intergenic Intergenic 152016 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 243.5-16 chr2 135947572 135948091 + 1.83333 NA intron (NM_001293312, intron 3 of 14) (A)n|Simple_repeat|Simple_repeat -37345 NR_110200 101928243 Hs.602178 NR_110199 ENSG00000231890 DARS-AS1 - DARS antisense RNA 1 ncRNA 212.166-9 chr5 129749425 129749555 + 1.83333 NA intron (NM_001257308, intron 1 of 2) intron (NM_001257308, intron 1 of 2) 1396 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 298.334-8 chr6 50578352 50578611 + 1.83333 NA Intergenic L1MC1|LINE|L1 -135063 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 411-4 chr5 147224170 147224826 + 1.83333 NA intron (NR_147191, intron 1 of 2) intron (NR_147191, intron 1 of 2) 10361 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 309.333-7 chr11 62168769 62169104 + 1.83333 NA Intergenic L1MB3|LINE|L1 -21280 NM_006552 10648 Hs.202686 NM_006552 ENSG00000168515 SCGB1D1 LIPA|LPHA|LPNA secretoglobin family 1D member 1 protein-coding 326.334-7 chr6 118776689 118777000 + 1.83333 NA Intergenic Intergenic -5864 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 243.166-11 chrX 106302472 106302620 + 1.83333 NA Intergenic Intergenic 134241 NM_152423 139221 Hs.592221 NM_152423 ENSG00000157502 PWWP3B MUM1L1 PWWP domain containing 3B protein-coding 446.833-3 chr20 36863910 36864338 + 1.83333 NA promoter-TSS (NM_080627) promoter-TSS (NM_080627) -586 NM_080627 140710 Hs.460807 NM_080627 ENSG00000149639 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 189.5-9 chr13 33520248 33520373 + 1.83333 NA intron (NM_001243476, intron 4 of 17) intron (NM_001243476, intron 4 of 17) 156484 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 165.5-16 chr16 1722332 1722608 + 1.83333 NA intron (NM_001040439, intron 1 of 30) intron (NM_001040439, intron 1 of 30) -12515 NR_036138 100423012 NR_036138 ENSG00000265820 MIR3177 mir-3177 microRNA 3177 ncRNA 271.333-13 chr17 53282277 53282464 + 1.83333 NA Intergenic L3|LINE|CR1 296865 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 286-25 chr8 84850355 84850711 + 1.83333 NA intron (NM_001287244, intron 4 of 7) Tigger6a|DNA|TcMar-Tigger 144606 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 398.999 chr1 110005580 110005813 + 1.83333 NA intron (NM_001242675, intron 1 of 16) intron (NM_001242675, intron 1 of 16) 1748 NM_001242675 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 231.5-20 chr2 48439855 48440053 + 1.83333 NA promoter-TSS (NM_152994) promoter-TSS (NM_152994) -812 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 329.833-4 chr19 7920246 7920578 + 1.83333 NA promoter-TSS (NM_003083) promoter-TSS (NM_003083) 74 NM_003083 6618 Hs.631860 NM_003083 ENSG00000104976 SNAPC2 PTFDELTA|SNAP45 small nuclear RNA activating complex polypeptide 2 protein-coding 422.5-8 chr8 70946767 70947226 + 1.83333 NA Intergenic Intergenic 277657 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 433.833-4 chr5 157820620 157821056 + 1.83333 NA intron (NM_001195556, intron 1 of 11) intron (NM_001195556, intron 1 of 11) 38307 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 249-3 chr10 76057398 76057657 + 1.83333 NA intron (NM_001305581, intron 4 of 6) intron (NM_001305581, intron 4 of 6) 274766 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 545.666 chr8 118953237 118954018 + 1.83333 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 1364 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 281-25 chr7 81679526 81679856 + 1.83333 NA intron (NR_126025, intron 1 of 10) intron (NR_126025, intron 1 of 10) 11715 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 205.833-16 chr2 143257892 143258212 + 1.83333 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 128633 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 226.667-3 chr10 25338460 25338684 + 1.83333 NA intron (NM_020752, intron 2 of 10) (TA)n|Simple_repeat|Simple_repeat -162296 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 257.334-2 chr13 111978179 111978608 + 1.83333 NA intron (NR_120392, intron 1 of 3) L1MB4|LINE|L1 6083 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 453-5 chr5 94693181 94693651 + 1.83333 NA intron (NM_032290, intron 20 of 20) intron (NM_032290, intron 20 of 20) 74747 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 344.667-9 chr16 58326758 58327093 + 1.83333 NA Intergenic L1MB1|LINE|L1 -31878 NM_001080492 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 291.166 chr1 195480708 195481037 + 1.83333 NA Intergenic L1M5|LINE|L1 607843 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 342.333-4 chr17 60262101 60262500 + 1.83333 NA intron (NM_032582, intron 9 of 33) AluSq2|SINE|Alu -30655 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 170.166-4 chr3 115800615 115800761 + 1.83333 NA Intergenic MER77B|LTR|ERVL 104438 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 284.5-11 chr2 209871151 209871323 + 1.83333 NA intron (NM_032504, intron 22 of 63) intron (NM_032504, intron 22 of 63) 99244 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 249.166-2 chr4 121738487 121738709 + 1.83333 NA Intergenic L3|LINE|CR1 25696 NM_001317839 132332 Hs.27524 NM_152399 ENSG00000164112 TMEM155 - transmembrane protein 155 protein-coding 254.833-3 chr10 110336204 110336561 + 1.83333 NA Intergenic Intergenic -31462 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 470-2 chr12 5171466 5171999 + 1.83333 NA Intergenic Intergenic 71419 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 208.167-8 chr11 22591968 22592160 + 1.83333 NA Intergenic Intergenic 33777 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 380.666-3 chr2 4763267 4763496 + 1.83333 NA Intergenic Intergenic -107159 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 216.833-25 chr8 89373426 89373594 + 1.83333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 384201 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 183.166-3 chr2 96977681 96977908 + 1.83333 NA intron (NM_001122646, intron 1 of 16) intron (NM_001122646, intron 1 of 16) 8786 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 342.833-6 chr15 66395128 66395494 + 1.83333 NA intron (NM_002755, intron 1 of 10) MER44A|DNA|TcMar-Tigger 8438 NM_002755 5604 Hs.145442 NM_002755 ENSG00000169032 MAP2K1 CFC3|MAPKK1|MEK1|MKK1|PRKMK1 mitogen-activated protein kinase kinase 1 protein-coding 557.666 chr1 229558984 229559515 + 1.83333 NA promoter-TSS (NM_012089) promoter-TSS (NM_012089) -542 NM_012089 23456 Hs.17614 NM_012089 ENSG00000135776 ABCB10 EST20237|M-ABC2|MTABC2 ATP binding cassette subfamily B member 10 protein-coding 532.333 chr22 22958194 22958744 + 1.83333 NA Intergenic Intergenic 70653 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 209-45 chr8 137893035 137893196 + 1.83333 NA intron (NR_161374, intron 2 of 7) MLT1G1|LTR|ERVL-MaLR 190430 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 265.166-4 chr5 150697618 150697843 + 1.83333 NA intron (NM_018047, intron 4 of 10) intron (NM_018047, intron 4 of 10) 3332 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 479.333-2 chr11 56624763 56625129 + 1.83333 NA Intergenic Intergenic -11444 NM_001004740 390168 Hs.553751 NM_001004740 ENSG00000255012 OR5M1 OR11-208|OST050 olfactory receptor family 5 subfamily M member 1 protein-coding 278.667-16 chr2 35267047 35267349 + 1.83333 NA Intergenic Intergenic -204207 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 316.5-14 chr2 38057983 38058295 + 1.83333 NA intron (NM_144713, intron 10 of 10) L1MEh|LINE|L1 18042 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 207.166 chr13 95834411 95834630 + 1.83333 NA intron (NM_020121, intron 37 of 38) intron (NM_020121, intron 37 of 38) 157381 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 315.499 chr18 13288058 13288230 + 1.83333 NA intron (NM_181482, intron 2 of 5) Mam_R4|LINE|Dong-R4 10039 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 403.833 chr10 68226264 68226678 + 1.83333 NA Intergenic Intergenic 5642 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 440.166-2 chr8 86511815 86512246 + 1.83333 NA intron (NM_001317807, intron 1 of 9) intron (NM_001317807, intron 1 of 9) 2327 NM_001317807 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 641.001 chr10 125879546 125880374 + 1.83333 NA intron (NM_018180, intron 1 of 10) MER57E1|LTR|ERV1 1332 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 242-6 chr10 113709452 113709619 + 1.83333 NA intron (NM_001267058, intron 1 of 5) intron (NM_001267058, intron 1 of 5) 190 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 462.5-2 chr17 57868352 57868750 + 1.83333 NA intron (NM_001271875, intron 7 of 10) intron (NM_001271875, intron 7 of 10) -18507 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 224.333-12 chr16 85037111 85037258 + 1.83333 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) 9433 NM_001286566 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 579.5-2 chr4 111799056 111799761 + 1.83333 NA Intergenic Intergenic -346046 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 260-3 chr11 8906007 8906168 + 1.83333 NA intron (NM_005418, intron 1 of 22) L1MB7|LINE|L1 4864 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 344.667-8 chr15 37880549 37880817 + 1.83333 NA Intergenic Intergenic -53924 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 216.333-30 chr3 151258889 151259082 + 1.83333 NA intron (NM_014879, intron 1 of 2) intron (NM_014879, intron 1 of 2) -9994 NM_001081455 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 350.167 chr10 23044265 23044631 + 1.83333 NA Intergenic MER95|LTR|ERV1 -51131 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 261.667-7 chr12 7094855 7095065 + 1.83333 NA 3' UTR (NM_016546, exon 6 of 6) 3' UTR (NM_016546, exon 6 of 6) -2515 NM_001733 715 Hs.524224 NM_001733 ENSG00000159403 C1R EDSPD1 complement C1r protein-coding 440.167-9 chr3 47519775 47520228 + 1.83333 NA Intergenic AluSz|SINE|Alu -6289 NM_001031703 54859 Hs.311100 NM_017713 ENSG00000163832 ELP6 C3orf75|TMEM103 elongator acetyltransferase complex subunit 6 protein-coding 440.167-10 chr5 64958800 64959208 + 1.83333 NA intron (NM_005869, intron 11 of 13) intron (NM_005869, intron 11 of 13) 190074 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 423.333-8 chr3 56913058 56913288 + 1.83333 NA intron (NM_001128615, intron 3 of 12) AluJr|SINE|Alu 3263 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 350.334 chr1 89780208 89780623 + 1.83333 NA Intergenic Intergenic -40617 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 195.333-22 chr4 33036129 33036401 + 1.83333 NA Intergenic Intergenic 685227 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 349.666-5 chrX 136925376 136925595 + 1.83333 NA Intergenic Intergenic -44705 NR_028477 27316 Hs.380118 NM_002139 ENSG00000147274 RBMX HNRNPG|HNRPG|MRXS11|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein X-linked protein-coding 277.166-3 chr4 170138723 170139137 + 1.83333 NA Intergenic Intergenic -48543 NM_001286683 51166 Hs.529735 NM_016228 ENSG00000109576 AADAT KAT2|KATII|KYAT2 aminoadipate aminotransferase protein-coding 174.667-51 chr7 71531268 71531422 + 1.83333 NA intron (NM_022479, intron 5 of 10) L1MA10|LINE|L1 -223575 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 269.5-3 chr1 237886036 237886353 + 1.83333 NA intron (NM_021186, intron 6 of 11) intron (NM_021186, intron 6 of 11) 4728 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 288.166 chr10 15939731 15940177 + 1.83333 NA Intergenic Intergenic -79421 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 263.5-2 chr1 109005958 109006134 + 1.83333 NA intron (NM_014969, intron 5 of 14) intron (NM_014969, intron 5 of 14) 36182 NM_001142551 22911 Hs.570055 NM_014969 ENSG00000085433 WDR47 - WD repeat domain 47 protein-coding 204.667-19 chr2 16614579 16614902 + 1.83333 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 51094 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 392.833-5 chr5 19608672 19609034 + 1.83333 NA intron (NM_001349559, intron 6 of 12) intron (NM_001349559, intron 6 of 12) 277419 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 404.334-7 chr2 81456111 81456689 + 1.83333 NA Intergenic Intergenic 10546 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 390-11 chr6 158707424 158707775 + 1.83333 NA intron (NM_001242394, intron 7 of 17) intron (NM_001242394, intron 7 of 17) 44196 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 344.833-4 chr13 40683259 40683560 + 1.83333 NA Intergenic AluSg|SINE|Alu -16768 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 221.167-25 chr6 40845729 40846007 + 1.83333 NA Intergenic Intergenic 177412 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 214.5-4 chr1 228487072 228487398 + 1.83333 NA promoter-TSS (NM_001010858) promoter-TSS (NM_001010858) -147 NM_001010858 149603 Hs.356377 NM_001010858 ENSG00000168159 RNF187 RACO-1|RACO1 ring finger protein 187 protein-coding 430.499-2 chr5 116948966 116949268 + 1.83333 NA Intergenic L1M6|LINE|L1 -186908 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 658.333 chr1 168084215 168085143 + 1.83333 NA 3' UTR (NM_001349634, exon 8 of 8) 3' UTR (NM_001349634, exon 8 of 8) 51757 NM_001267612 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 288.333-9 chr17 59039832 59040178 + 1.83333 NA intron (NR_148346, intron 17 of 23) AluJb|SINE|Alu 66875 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 183.5-12 chr15 42984603 42984737 + 1.83333 NA intron (NM_174916, intron 36 of 46) intron (NM_174916, intron 36 of 46) -63892 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 170.667-49 chr8 42057845 42057981 + 1.83333 NA intron (NR_136589, intron 1 of 1) L1MEc|LINE|L1 -5926 NM_006766 7994 Hs.491577 NM_006766 ENSG00000083168 KAT6A MOZ|MRD32|MYST-3|MYST3|RUNXBP2|ZC2HC6A|ZNF220 lysine acetyltransferase 6A protein-coding 397.166-4 chr9 28380710 28381119 + 1.83333 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 338391 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 281.666 chr17 59235856 59236055 + 1.83333 NA intron (NM_182569, intron 2 of 9) intron (NM_182569, intron 2 of 9) 15444 NM_182569 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 426.667-5 chr4 155392705 155393139 + 1.83333 NA Intergenic L2b|LINE|L2 -15957 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 278.666-12 chr8 142676054 142676463 + 1.83333 NA intron (NR_033343, intron 1 of 2) intron (NR_033343, intron 1 of 2) -4237 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 313.333-5 chr1 234631862 234632094 + 1.83333 NA intron (NR_033927, intron 1 of 1) MLT1K|LTR|ERVL-MaLR 2667 NR_033927 100302691 Hs.209162 NR_033927 ENSG00000224939 LINC00184 HANC|NCRNA00184 long intergenic non-protein coding RNA 184 ncRNA 343.667-7 chr14 21841036 21841387 + 1.83333 NA Intergenic Intergenic -170194 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 360.5-5 chr18 62130750 62131123 + 1.83333 NA intron (NM_176787, intron 14 of 30) intron (NM_176787, intron 14 of 30) 56120 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 469.5-6 chr8 81799825 81800123 + 1.83333 NA non-coding (NR_145473, exon 6 of 6) non-coding (NR_145473, exon 6 of 6) 42211 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 215.166-2 chr5 141677320 141677787 + 1.83333 NA intron (NM_022481, intron 4 of 32) L2a|LINE|L2 4677 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 254.666-4 chr20 54799726 54799989 + 1.83333 NA Intergenic THE1D|LTR|ERVL-MaLR 324264 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 321.5-19 chr5 58945638 58945936 + 1.83333 NA Intergenic Intergenic 54111 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 389.833-3 chr15 62923008 62923492 + 1.83333 NA Intergenic Intergenic 99293 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 205.333-37 chr4 110534083 110534249 + 1.83333 NA intron (NM_001977, intron 11 of 19) intron (NM_001977, intron 11 of 19) 58011 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 230.333-26 chr4 62385438 62385571 + 1.83333 NA Intergenic L1MEg|LINE|L1 -223739 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 337.166 chr2 4146959 4147167 + 1.83333 NA Intergenic L1ME1|LINE|L1 172902 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 203-33 chr8 119591482 119591631 + 1.83333 NA intron (NM_001330600, intron 12 of 25) intron (NM_001330600, intron 12 of 25) 1452 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 331.167-6 chr16 20904898 20905193 + 1.83333 NA intron (NR_161432, intron 2 of 3) intron (NR_161432, intron 2 of 3) 3783 NR_161432 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 226.5-28 chr4 57426152 57426319 + 1.83333 NA intron (NR_125907, intron 1 of 5) intron (NR_125907, intron 1 of 5) 363 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 482.666 chr1 46039644 46040009 + 1.83333 NA TTS (NM_001328653) TTS (NM_001328653) 90847 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 426-9 chr21 31903332 31903768 + 1.83333 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 30530 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 289.333-24 chr5 155526012 155526631 + 1.83333 NA Intergenic Intergenic 512566 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 228.5-32 chr7 25176173 25176331 + 1.83333 NA intron (NM_138811, intron 2 of 9) intron (NM_138811, intron 2 of 9) 4102 NM_001371351 497.333 chr14 19884873 19885298 + 1.83333 NA Intergenic MLT2F|LTR|ERVL 8817 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 476.333-4 chrX 83008397 83009012 + 1.83333 NA Intergenic HUERS-P3-int|LTR|ERV1 -499586 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 311.166 chr7 36051787 36052134 + 1.83333 NA Intergenic Tigger1|DNA|TcMar-Tigger -43350 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 656.667-2 chr4 77432948 77433810 + 1.83333 NA Intergenic MLT2C1|LTR|ERVL -78374 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 325.999-3 chr18 11237334 11237555 + 1.83333 NA Intergenic Intergenic -88682 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 196-37 chr5 92555615 92556031 + 1.83333 NA Intergenic Zaphod|DNA|hAT-Tip100 1015520 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 211.5-8 chr10 66627362 66627705 + 1.83333 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -298503 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 902.666 chr9 96856314 96857359 + 1.83333 NA Intergenic Intergenic -2322 NM_001346991 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 422.666-6 chr8 144351603 144351874 + 1.83333 NA Intergenic Intergenic 3193 NM_001252404 340393 Hs.122231 NM_001252402 ENSG00000261587 TMEM249 C8ORFK29 transmembrane protein 249 protein-coding 550.666-3 chr7 120805665 120806123 + 1.83333 NA intron (NM_012338, intron 7 of 7) intron (NM_012338, intron 7 of 7) 52250 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 314-13 chr21 36060339 36060538 + 1.83333 NA promoter-TSS (NM_017438) promoter-TSS (NM_017438) -74 NM_001007261 54093 Hs.606200 NM_017438 ENSG00000185917 SETD4 C21orf18|C21orf27 SET domain containing 4 protein-coding 436-3 chr4 87679272 87680006 + 1.83333 NA Intergenic Intergenic 29359 NM_004407 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 244.666-9 chr5 35710703 35710893 + 1.83333 NA intron (NM_024867, intron 19 of 36) intron (NM_024867, intron 19 of 36) 92935 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 310.666-4 chr7 111219003 111219295 + 1.83333 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 128022 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 543.167-3 chr5 165089799 165090132 + 1.83333 NA Intergenic Intergenic 619686 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 308.5-7 chr11 47408267 47408453 + 1.83333 NA promoter-TSS (NM_152264) promoter-TSS (NM_152264) -135 NM_152264 91252 Hs.523664 NM_152264 ENSG00000165915 SLC39A13 EDSSPD3|LZT-Hs9|SCDEDS|ZIP13 solute carrier family 39 member 13 protein-coding 362.333-12 chr5 75622677 75622915 + 1.83333 NA intron (NM_001276713, intron 3 of 13) intron (NM_001276713, intron 3 of 13) 11320 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 312.333-13 chr17 69727663 69728209 + 1.83333 NA intron (NR_109972, intron 3 of 4) L1MB2|LINE|L1 133949 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 292.833-2 chr10 66930141 66930381 + 1.83333 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 4225 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 218.166-2 chr2 44854508 44854703 + 1.83333 NA Intergenic L1MEi|LINE|L1 84283 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 285.5-4 chr11 90767344 90767567 + 1.83333 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 101747 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 234.5-39 chr9 95044103 95044247 + 1.83333 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -21175 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 430.499-3 chr8 126766973 126767316 + 1.83333 NA Intergenic Intergenic -208666 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 240.5-17 chr3 12824437 12824613 + 1.83333 NA intron (NM_012298, intron 9 of 12) MSTD|LTR|ERVL-MaLR 15925 NM_001007074 6161 Hs.265174 NM_000994 ENSG00000144713 RPL32 L32|PP9932 ribosomal protein L32 protein-coding 240.333-13 chr20 54209258 54209603 + 1.83333 NA intron (NM_002623, intron 1 of 3) intron (NM_002623, intron 1 of 3) 1343 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 723.334 chr10 89564106 89564625 + 1.83333 NA Intergenic L1MB5|LINE|L1 28462 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 254.5-16 chr18 44578894 44579242 + 1.83333 NA Intergenic MamRep434|DNA|TcMar-Tigger 47289 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 169-24 chr18 44540774 44540946 + 1.83333 NA intron (NR_131768, intron 1 of 4) intron (NR_131768, intron 1 of 4) 9081 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 581.5-5 chr8 130650660 130651245 + 1.83333 NA Intergenic MIR|SINE|MIR -207278 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 228.667-42 chr5 128081668 128082158 + 1.83333 NA intron (NR_152805, intron 1 of 3) intron (NR_152805, intron 1 of 3) 1262 NR_152814 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 350-19 chr6 156734569 156734941 + 1.83333 NA Intergenic Intergenic -43100 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 177-41 chr8 27583723 27583871 + 1.83333 NA Intergenic Intergenic 26954 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 368-3 chr2 88191441 88192188 + 1.83333 NA Intergenic Intergenic 18675 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 523.667-3 chr17 82781698 82782198 + 1.83333 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 29883 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 206.5-35 chr2 196160162 196160328 + 1.83333 NA intron (NM_004226, intron 2 of 7) intron (NM_004226, intron 2 of 7) 11333 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 602.833-2 chr2 225282836 225283349 + 1.83333 NA Intergenic Intergenic -116618 NM_001371273 489.001 chr1 226400917 226401416 + 1.83333 NA intron (NM_001618, intron 2 of 22) L1MC1|LINE|L1 6927 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 760.167-3 chr18 37778130 37778954 + 1.83333 NA Intergenic Intergenic 121407 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 274.667-13 chr2 10835262 10835755 + 1.83333 NA intron (NM_001282705, intron 1 of 13) intron (NM_001282705, intron 1 of 13) 2204 NM_001282705 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 305.834-3 chr18 64186915 64187412 + 1.83333 NA intron (NR_033881, intron 2 of 9) intron (NR_033881, intron 2 of 9) -38137 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 352.833 chr1 39180075 39180656 + 1.83333 NA intron (NM_012090, intron 1 of 92) AluSz|SINE|Alu 96198 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 294.167-11 chr5 26511628 26511842 + 1.83333 NA Intergenic Intergenic 526851 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 354.5-5 chr17 68942660 68943167 + 1.83333 NA intron (NM_001288986, intron 1 of 38) intron (NM_001288986, intron 1 of 38) 12479 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 274-16 chr2 38556837 38557073 + 1.83333 NA Intergenic Intergenic -41215 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 305-12 chr3 151918415 151918707 + 1.83333 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) 9614 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 314.5-18 chr9 27568569 27568793 + 1.83333 NA intron (NM_145005, intron 1 of 4) Tigger3c|DNA|TcMar-Tigger 4800 NM_018325 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 232.333-21 chr6 129733087 129733267 + 1.83333 NA Intergenic L3|LINE|CR1 -23000 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 413.167-3 chr17 82321233 82321832 + 1.83333 NA 3' UTR (NM_003004, exon 5 of 5) 3' UTR (NM_003004, exon 5 of 5) -3924 NM_006137 924 Hs.36972 NM_006137 ENSG00000173762 CD7 GP40|LEU-9|TP41|Tp40 CD7 molecule protein-coding 383.833-8 chr3 100905679 100906074 + 1.83333 NA intron (NM_001349332, intron 2 of 35) MER45B|DNA|hAT-Tip100 87614 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 222.5-21 chr18 47772791 47773035 + 1.83333 NA Intergenic Intergenic 157746 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 196.167-37 chr8 130483274 130483506 + 1.83333 NA Intergenic L3|LINE|CR1 -39716 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 445.499-2 chr10 63412751 63413074 + 1.83333 NA intron (NM_001322258, intron 1 of 24) Tigger2b_Pri|DNA|TcMar-Tigger -17663 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 287.166 chr10 67815830 67816185 + 1.83333 NA intron (NM_021800, intron 2 of 4) intron (NM_021800, intron 2 of 4) 22172 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 309.166 chr10 63564681 63564928 + 1.83333 NA intron (NM_001001330, intron 1 of 7) L1ME4a|LINE|L1 -42914 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 260.333-5 chr16 24666017 24666224 + 1.83333 NA intron (NR_122072, intron 1 of 2) AluJr|SINE|Alu 4942 NR_122072 400511 Hs.592028 NR_122072 ENSG00000224310 LINC01567 LOCCS long intergenic non-protein coding RNA 1567 ncRNA 333.833-11 chr4 100337504 100337720 + 1.83333 NA Intergenic L1PA14|LINE|L1 57635 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 438 chr1 180402901 180403247 + 1.83333 NA intron (NM_032360, intron 5 of 7) L1ME2z|LINE|L1 35316 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 295.667-22 chr9 5423880 5424249 + 1.83333 NA intron (NM_018465, intron 3 of 5) (TATATG)n|Simple_repeat|Simple_repeat 13861 NM_018465 55848 Hs.584242 NM_018465 ENSG00000107020 PLGRKT AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT) plasminogen receptor with a C-terminal lysine protein-coding 502.5-5 chr2 236512681 236513159 + 1.83333 NA Intergenic Intergenic -5385 NM_001270584 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 191.333-12 chr14 47654364 47654552 + 1.83333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 20496 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 313-15 chr9 74323930 74324211 + 1.83333 NA Intergenic L1PA17|LINE|L1 -47461 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 268.166-2 chr11 123582795 123583043 + 1.83333 NA intron (NM_001286563, intron 3 of 20) intron (NM_001286563, intron 3 of 20) 22657 NM_001286564 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 434-7 chr18 48475789 48476633 + 1.83333 NA Intergenic Intergenic -62820 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 267.5-31 chr4 70269663 70269924 + 1.83333 NA Intergenic Intergenic 27177 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 309-23 chr9 73151522 73151767 + 1.83333 NA promoter-TSS (NM_000700) promoter-TSS (NM_000700) -221 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 221.166-2 chr5 172233920 172234054 + 1.83333 NA intron (NM_152277, intron 2 of 2) intron (NM_152277, intron 2 of 2) 39815 NM_001171183 285588 Hs.716824 NM_001171183 ENSG00000214360 EFCAB9 - EF-hand calcium binding domain 9 protein-coding 357-9 chr20 19995333 19995778 + 1.83333 NA intron (NM_001242581, intron 10 of 11) intron (NM_001242581, intron 10 of 11) -21735 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 1073.67 chr11 45842096 45843554 + 1.83333 NA Intergenic L1ME3|LINE|L1 -4293 NM_001127457 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian regulator 2 protein-coding 493.666 chr14 73864220 73864657 + 1.83333 NA TTS (NM_001371335) TTS (NM_001371335) 12491 NM_001371328 204.833-23 chr5 72020185 72020365 + 1.83333 NA Intergenic Intergenic -87200 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 383.833-4 chr17 48107442 48107789 + 1.83333 NA promoter-TSS (NM_001330320) promoter-TSS (NM_001330320) 30 NM_013323 29916 Hs.15827 NM_013323 ENSG00000002919 SNX11 - sorting nexin 11 protein-coding 366.833-2 chr11 135075616 135075977 + 1.83333 NA Intergenic TAR1|Satellite|telo 90444 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 395.166-2 chr14 66843959 66844337 + 1.83333 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) 336741 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 292.833-3 chr11 15290332 15290562 + 1.83333 NA Intergenic MER63A|DNA|hAT-Blackjack 141345 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 376.5-4 chr12 16308819 16309276 + 1.83333 NA Intergenic Intergenic -31362 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 342.667-3 chr10 75643353 75644211 + 1.83333 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -3727 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 312.333-21 chr5 169371843 169372084 + 1.83333 NA Intergenic L1PA10|LINE|L1 -70824 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 232.833-25 chr4 116874904 116875096 + 1.83333 NA Intergenic Intergenic 210576 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 395.667-8 chr5 160056051 160056312 + 1.83333 NA intron (NM_003314, intron 7 of 7) intron (NM_003314, intron 7 of 7) 47042 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 333.666 chr3 23018077 23018357 + 1.83333 NA Intergenic Intergenic 184361 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 266.5-17 chr3 197752223 197752491 + 1.83333 NA intron (NR_027840, intron 1 of 8) MIR|SINE|MIR 2110 NR_027840 84248 Hs.277533 NM_032288 ENSG00000122068 FYTTD1 UIF forty-two-three domain containing 1 protein-coding 203.667-22 chr2 45778387 45778847 + 1.83333 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 126942 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 429.5-2 chr14 54593274 54593599 + 1.83333 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 25824 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 171-30 chr2 69177966 69178161 + 1.83333 NA intron (NM_032208, intron 14 of 17) intron (NM_032208, intron 14 of 17) 74381 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 466.167-3 chr8 56835622 56836210 + 1.83333 NA Intergenic Intergenic 157951 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 205.166-2 chr10 43845761 43845933 + 1.83333 NA intron (NR_033923, intron 2 of 2) intron (NR_033923, intron 2 of 2) 541 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 204.5-25 chr3 81871979 81872208 + 1.83333 NA Intergenic Intergenic -110448 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 348.666-6 chr17 68939270 68939540 + 1.83333 NA intron (NM_001288985, intron 4 of 39) MLT1K|LTR|ERVL-MaLR 15987 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 186.166-5 chr8 84155204 84155338 + 1.83333 NA Intergenic Intergenic -27516 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 641.666 chr2 11340598 11341427 + 1.83333 NA intron (NM_001321643, intron 1 of 32) intron (NM_001321643, intron 1 of 32) 3624 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 366.334-7 chr2 219129276 219129677 + 1.83333 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) 31389 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 545.166-2 chr8 121981893 121982379 + 1.83333 NA Intergenic AluSq2|SINE|Alu -340696 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 257.833-5 chr2 214006423 214006615 + 1.83333 NA intron (NR_047660, intron 11 of 14) GA-rich|Low_complexity|Low_complexity 248452 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 186.167-7 chr13 43063391 43063555 + 1.83333 NA intron (NM_013238, intron 1 of 5) intron (NM_013238, intron 1 of 5) 39887 NM_013238 29103 Hs.438830 NM_013238 ENSG00000120675 DNAJC15 DNAJD1|HSD18|MCJ DnaJ heat shock protein family (Hsp40) member C15 protein-coding 336.333-6 chr3 56017897 56018206 + 1.83333 NA intron (NR_132749, intron 8 of 17) intron (NR_132749, intron 8 of 17) -165457 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 254.333-21 chr19 41835912 41836258 + 1.83333 NA TTS (NM_001291419) TTS (NM_001291419) 7642 NM_001291419 147719 Hs.98660 NM_173506 ENSG00000273111 LYPD4 SMR LY6/PLAUR domain containing 4 protein-coding 310.833-6 chr2 122834072 122834348 + 1.83333 NA Intergenic L1M3|LINE|L1 239271 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 212.667-13 chr15 38701247 38701493 + 1.83333 NA Intergenic L1ME3A|LINE|L1 4772 NR_160786 380.667-6 chr5 108656547 108656817 + 1.83333 NA Intergenic Intergenic 71579 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 358.667-8 chr4 37598289 37598564 + 1.83333 NA intron (NM_001085399, intron 6 of 6) intron (NM_001085399, intron 6 of 6) 14193 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 265.5-29 chr6 156969047 156969207 + 1.83333 NA intron (NM_020732, intron 5 of 19) Tigger16a|DNA|TcMar-Tigger -67300 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 393.833-3 chr3 42896406 42896844 + 1.83333 NA Intergenic MER50-int|LTR|ERV1 -9517 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 212.166-2 chr1 198881248 198881495 + 1.83333 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) -22218 NR_029626 406995 NR_029626 ENSG00000207759 MIR181A1 MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213 microRNA 181a-1 ncRNA 165.333-27 chr3 41683024 41683161 + 1.83333 NA intron (NR_136342, intron 25 of 34) LTR35|LTR|ERV1 279011 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 593.667-2 chr2 8685976 8686545 + 1.83333 NA Intergenic L1MD|LINE|L1 4204 NM_002166 3398 Hs.180919 NM_002166 ENSG00000115738 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2 protein-coding 231.5-9 chr13 30973154 30973367 + 1.83333 NA intron (NM_152325, intron 6 of 6) L1ME2|LINE|L1 40604 NR_148425 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 317.166-7 chr8 144128898 144129189 + 1.83333 NA Intergenic L1ME3D|LINE|L1 -8731 NM_016458 51236 Hs.300224 NM_016458 ENSG00000235173 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog protein-coding 323.333-2 chr1 42344040 42344576 + 1.83333 NA Intergenic Intergenic -8428 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 322.833-5 chr3 47669826 47670192 + 1.83333 NA intron (NM_003074, intron 19 of 27) Charlie1a|DNA|hAT-Charlie -8315 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 321.333-17 chr9 91056462 91056769 + 1.83333 NA Intergenic L1ME3Cz|LINE|L1 18517 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 169.833-37 chr5 107135450 107135658 + 1.83333 NA Intergenic LTR86B2|LTR|ERVL -124540 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 242.333-8 chr15 19987388 19987638 + 1.83333 NA Intergenic Intergenic -295231 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 593.334 chr11 111870716 111871281 + 1.83333 NA non-coding (NR_147984, exon 1 of 16) non-coding (NR_147984, exon 1 of 16) 283 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 504.666-4 chr2 83646683 83647166 + 1.83333 NA Intergenic Intergenic 124110 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 631.666-3 chr7 157250624 157251216 + 1.83333 NA intron (NM_014671, intron 19 of 22) intron (NM_014671, intron 19 of 22) -86084 NM_001363676 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 271.333-3 chr1 241639250 241639421 + 1.83333 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 1034 NM_014322 23596 Hs.409081 NM_014322 ENSG00000054277 OPN3 ECPN|PPP1R116 opsin 3 protein-coding 406.333-2 chr17 47890064 47890540 + 1.83333 NA TTS (NR_135480) TTS (NR_135480) 5514 NR_135480 102724532 Hs.729067 NR_135480 ENSG00000264920 LOC102724532 - uncharacterized LOC102724532 ncRNA 376.333-8 chr15 87604911 87605462 + 1.83333 NA Intergenic Intergenic 28257 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 663.333 chr10 22550511 22551133 + 1.83333 NA intron (NM_005028, intron 6 of 9) intron (NM_005028, intron 6 of 9) -112893 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 526.333-2 chr3 183480110 183480593 + 1.83333 NA Intergenic AluSc|SINE|Alu 26537 NR_145763 109617007 NR_145763 ENSG00000199363 SNORA63E - small nucleolar RNA, H/ACA box 63E snoRNA 432.333-8 chr3 88596202 88596443 + 1.83333 NA Intergenic Intergenic 257866 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 182.5-34 chr5 142904524 142904919 + 1.83333 NA intron (NR_146198, intron 8 of 22) intron (NR_146198, intron 8 of 22) -35811 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 384.833-9 chr7 139017007 139017283 + 1.83333 NA Intergenic MLT1N2|LTR|ERVL-MaLR 18897 NM_080660 92092 Hs.512833 NM_080660 ENSG00000146858 ZC3HAV1L C7orf39 zinc finger CCCH-type containing, antiviral 1 like protein-coding 290-9 chr20 10255780 10256079 + 1.83333 NA intron (NM_001322908, intron 3 of 9) intron (NM_001322908, intron 3 of 9) -36423 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 525.166 chr1 230273622 230274194 + 1.83333 NA intron (NM_004481, intron 14 of 15) intron (NM_004481, intron 14 of 15) 152424 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 480.666 chr14 54584744 54585572 + 1.83333 NA intron (NM_015589, intron 1 of 11) L1ME4a|LINE|L1 17546 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 385.499 chr5 36641684 36642004 + 1.83333 NA intron (NM_004172, intron 3 of 9) Charlie22a|DNA|hAT-Charlie 35238 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 218.833-3 chr10 70399421 70399703 + 1.83333 NA Intergenic L1MB7|LINE|L1 -4583 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 261.667-9 chr12 46661512 46661774 + 1.83333 NA Intergenic Intergenic 164354 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 208.833 chr1 40717121 40717385 + 1.83333 NA intron (NM_001142590, intron 3 of 14) intron (NM_001142590, intron 3 of 14) 7887 NM_001308115 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 300.833-4 chr14 50454496 50454736 + 1.83333 NA intron (NM_198794, intron 14 of 31) intron (NM_198794, intron 14 of 31) -57318 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 1211.67-2 chr5 74033871 74034922 + 1.83333 NA Intergenic Intergenic 220850 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 169.333-55 chr6 116528850 116529081 + 1.83333 NA promoter-TSS (NM_001256887) promoter-TSS (NM_001256887) -78 NM_001256889 221301 Hs.350750 NM_153036 ENSG00000164451 CALHM4 C6orf78|FAM26D calcium homeostasis modulator family member 4 protein-coding 228.167-24 chr6 599536 599710 + 1.83333 NA intron (NM_018303, intron 7 of 27) intron (NM_018303, intron 7 of 27) 57341 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 391-3 chr18 3596626 3597124 + 1.83333 NA non-coding (NR_024101, exon 3 of 3) non-coding (NR_024101, exon 3 of 3) 2761 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 284.666-9 chr6 19142519 19142804 + 1.83333 NA intron (NR_110860, intron 5 of 10) intron (NR_110860, intron 5 of 10) 37819 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 618.999 chr5 14398671 14399530 + 1.83333 NA intron (NM_007118, intron 30 of 56) intron (NM_007118, intron 30 of 56) -64883 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 308.833-6 chr11 5838269 5838488 + 1.83333 NA Intergenic L1PREC2|LINE|L1 3519 NM_001005167 390078 NM_001005167 ENSG00000205409 OR52E6 OR11-58 olfactory receptor family 52 subfamily E member 6 protein-coding 352.166-3 chr8 31316266 31316563 + 1.83333 NA Intergenic Intergenic -283058 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 164.166-2 chr12 105159789 105159919 + 1.83333 NA intron (NM_001293640, intron 28 of 32) intron (NM_001293640, intron 28 of 32) 52123 NM_015275 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 241.166-2 chr14 88380512 88380825 + 1.83333 NA Intergenic Intergenic -4976 NM_001040428 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 338.999 chr13 105724831 105725034 + 1.83333 NA intron (NR_046391, intron 3 of 3) L2a|LINE|L2 18102 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 425.666-2 chr7 128056999 128057276 + 1.83333 NA intron (NM_014390, intron 16 of 23) MER44B|DNA|TcMar-Tigger -24724 NR_030324 693178 NR_030324 ENSG00000207588 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 393.499 chr11 7124383 7124680 + 1.83333 NA Intergenic L1MD1|LINE|L1 35533 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 255.333-17 chr3 7580322 7580524 + 1.83333 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -45139 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 722.001-3 chr21 41612328 41613151 + 1.83333 NA Intergenic Intergenic -66563 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 285.499-2 chr4 29533921 29534076 + 1.83333 NA Intergenic MLT1B|LTR|ERVL-MaLR 319706 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 501.001 chr11 5600130 5600548 + 1.83333 NA intron (NM_001198645, intron 1 of 5) MIR|SINE|MIR 3702 NM_001198644 117854 Hs.729048 NM_058166 ENSG00000121236 TRIM6 RNF89 tripartite motif containing 6 protein-coding 392.999-4 chr7 92238734 92239092 + 1.83333 NA intron (NM_001013406, intron 4 of 16) intron (NM_001013406, intron 4 of 16) -7061 NM_019004 54467 Hs.83293 NM_019004 ENSG00000001629 ANKIB1 - ankyrin repeat and IBR domain containing 1 protein-coding 355.833-7 chr3 77255187 77255654 + 1.83333 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 157408 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 184.5-6 chr1 163316272 163316378 + 1.83333 NA intron (NM_001254748, intron 1 of 5) intron (NM_001254748, intron 1 of 5) 5466 NR_045630 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 330.833-2 chr10 77719274 77719483 + 1.83333 NA Intergenic MIR|SINE|MIR -81570 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 245.167-16 chr7 50243982 50244296 + 1.83333 NA Intergenic Charlie5|DNA|hAT-Charlie -59925 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 309.499 chr13 64727624 64727809 + 1.83333 NA Intergenic L1ME2z|LINE|L1 -651705 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 237.833-13 chr20 53942598 53942804 + 1.83333 NA TTS (NM_001366296) TTS (NM_001366296) -66992 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 207.5-21 chr2 43470719 43470919 + 1.83333 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 125155 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 297.833-4 chr15 58699667 58699850 + 1.83333 NA intron (NM_001320570, intron 2 of 14) AluJb|SINE|Alu -6151 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 185.333-24 chr2 20052995 20053188 + 1.83333 NA Intergenic Intergenic -1463 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 309.666-7 chr8 80300167 80300398 + 1.83333 NA Intergenic L2|LINE|L2 58893 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 536.834 chr13 57626290 57626738 + 1.83333 NA Intergenic Intergenic -5230 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 196-13 chr17 47205597 47205817 + 1.83333 NA Intergenic Intergenic -3355 NM_001002841 4635 Hs.463300 NM_002476 ENSG00000198336 MYL4 ALC1|AMLC|GT1|PRO1957 myosin light chain 4 protein-coding 381.166-5 chr6 55584450 55584935 + 1.83333 NA Intergenic Intergenic -5478 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 575.834-4 chr20 7936539 7937362 + 1.83333 NA intron (NM_017545, intron 1 of 7) intron (NM_017545, intron 1 of 7) 3508 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 176.166 chr1 22022854 22023080 + 1.83333 NA Intergenic L2b|LINE|L2 -2224 NR_023918 29092 Hs.279842 NR_023918 ENSG00000218510 LINC00339 HSPC157|NCRNA00339 long intergenic non-protein coding RNA 339 ncRNA 811.166 chr3 181176042 181177189 + 1.83333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 1471 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 310-3 chr11 3605893 3606296 + 1.83333 NA Intergenic MER94|DNA|hAT-Blackjack -20366 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel subfamily C member 2 (pseudogene) pseudo 676.499 chr6 42563704 42564183 + 1.83333 NA promoter-TSS (NM_001184801) promoter-TSS (NM_001184801) -79 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 224.666 chr1 179141763 179141982 + 1.83333 NA intron (NM_007314, intron 1 of 11) intron (NM_007314, intron 1 of 11) 1204 NM_001136000 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 205.666 chr11_KI270830v1_alt 19325 19532 + 1.83333 NA Intergenic MIR|SINE|MIR 35080 NM_004420 1850 Hs.41688 NM_004420 ENSG00000184545 DUSP8 C11orf81|HB5|HVH-5|HVH8 dual specificity phosphatase 8 protein-coding 430.501-5 chr4 124070719 124071357 + 1.83333 NA Intergenic L1MB2|LINE|L1 296774 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 236.833-8 chr14 53657073 53657276 + 1.83333 NA Intergenic Intergenic 291310 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 308.166-2 chr1 76320523 76320827 + 1.83333 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 245929 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 429.666-2 chr17 35669589 35669884 + 1.83333 NA intron (NM_001282, intron 14 of 20) intron (NM_001282, intron 14 of 20) -61903 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 281.833-9 chr22 37862859 37863036 + 1.83333 NA intron (NM_001242923, intron 5 of 10) intron (NM_001242923, intron 5 of 10) 13528 NM_001363785 51386 Hs.446852 NM_016091 ENSG00000100129 EIF3L EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005 eukaryotic translation initiation factor 3 subunit L protein-coding 263.833-10 chr4 7339243 7339386 + 1.83333 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 28864 NR_039961 100616471 NR_039961 ENSG00000264658 MIR4798 - microRNA 4798 ncRNA 326.5-6 chr16 74309767 74310190 + 1.83333 NA Intergenic Intergenic 13164 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 179.5-44 chr7 25394470 25394631 + 1.83333 NA Intergenic Intergenic -166064 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 208.167-14 chr2 33769537 33769760 + 1.83333 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -41431 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 523.667-4 chr4 105140792 105141251 + 1.83333 NA Intergenic Intergenic -4854 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 269.166-2 chr12 10407740 10408022 + 1.83333 NA intron (NM_001199805, intron 3 of 12) intron (NM_001199805, intron 3 of 12) 1876 NM_013431 8302 Hs.721094 NM_013431 ENSG00000183542 KLRC4 NKG2-F|NKG2F killer cell lectin like receptor C4 protein-coding 258-24 chr3 46488602 46488865 + 1.83333 NA Intergenic L1MC3|LINE|L1 -3499 NM_001321122 4057 Hs.529517 NM_002343 ENSG00000012223 LTF GIG12|HEL110|HLF2|LF lactotransferrin protein-coding 423-5 chr14 54989281 54989689 + 1.83333 NA intron (NM_007086, intron 12 of 25) intron (NM_007086, intron 12 of 25) 37614 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 416-5 chr20 57191882 57192314 + 1.83333 NA intron (NM_001719, intron 3 of 6) L1M5|LINE|L1 -21598 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 505.333 chr11 7314632 7314939 + 1.83333 NA intron (NM_175733, intron 3 of 6) intron (NM_175733, intron 3 of 6) 62881 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 443.833-5 chr3 125566723 125567063 + 1.83333 NA intron (NM_022776, intron 6 of 12) FRAM|SINE|Alu 28604 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 348-14 chr8 118470136 118470953 + 1.83333 NA intron (NM_001101676, intron 2 of 4) MIRc|SINE|MIR -150457 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 299.5-2 chr1 71547075 71547435 + 1.83333 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 289757 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 510.166 chr10 25688177 25688648 + 1.83333 NA intron (NR_108067, intron 2 of 4) (TA)n|Simple_repeat|Simple_repeat 36700 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 444.5 chr1 34852370 34852990 + 1.83333 NA 3' UTR (NM_001164824, exon 3 of 3) 3' UTR (NM_001164824, exon 3 of 3) 6365 NM_001164824 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 297.166-3 chr15 100829052 100829248 + 1.83333 NA Intergenic AluJr4|SINE|Alu -20602 NR_160702 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 197.333 chr1 79401565 79401751 + 1.83333 NA Intergenic L2a|LINE|L2 -394928 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 405.333-9 chr5 121870752 121871113 + 1.83333 NA Intergenic Intergenic 19050 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 247.333-23 chr7 119482472 119482680 + 1.83333 NA Intergenic Intergenic 424799 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 212.334-6 chr7 95559191 95559348 + 1.83333 NA Intergenic Intergenic 37247 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 553-5 chr16 10738102 10738961 + 1.83333 NA Intergenic L2|LINE|L2 -5255 NM_001278506 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 312.333-22 chr9 21252954 21253125 + 1.83333 NA Intergenic Intergenic -13034 NM_002172 3448 Hs.93907 NM_002172 ENSG00000228083 IFNA14 IFN-alphaH|LEIF2H interferon alpha 14 protein-coding 356.999 chr18 71516963 71517250 + 1.83333 NA Intergenic Intergenic 61850 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 288.333-13 chr4 91418360 91418774 + 1.83333 NA intron (NM_001145065, intron 10 of 10) L1MA9|LINE|L1 858735 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 202.5-24 chr15 83056709 83056924 + 1.83333 NA intron (NM_001011885, intron 1 of 6) AluJb|SINE|Alu 10436 NM_001011885 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 214.167-18 chr3 2211870 2212085 + 1.83333 NA intron (NM_175607, intron 2 of 24) AluJr4|SINE|Alu -26852 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 383.333 chr1 84312489 84312745 + 1.83333 NA intron (NM_001134663, intron 2 of 3) Charlie5|DNA|hAT-Charlie 9966 NM_001134664 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 340.167-6 chr3 30770511 30770908 + 1.83333 NA intron (NM_207359, intron 14 of 14) (CTCAGC)n|Simple_repeat|Simple_repeat 123952 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 616-3 chr8 90521093 90521949 + 1.83333 NA Intergenic MLT1I|LTR|ERVL-MaLR 84542 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 277.667-7 chr12 88993640 88993892 + 1.83333 NA Intergenic Intergenic 25926 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 717.499 chr21 36112647 36113235 + 1.83333 NA intron (NR_040084, intron 1 of 3) intron (NR_040084, intron 1 of 3) 8060 NR_147887 105369306 NR_147887 ENSG00000233393 LOC105369306 - uncharacterized LOC105369306 ncRNA 362.999 chr16 23801340 23801647 + 1.83333 NA Intergenic Intergenic -34490 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 322.5-14 chr20 55714368 55714609 + 1.83333 NA Intergenic Intergenic -287291 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 452.167-5 chr22 37457545 37458058 + 1.83333 NA Intergenic Intergenic 28583 NR_029413 4242 Hs.517603 NM_002405 ENSG00000100060 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 1203.33-3 chr2 85066342 85067407 + 1.83333 NA non-coding (NR_146453, exon 1 of 2) non-coding (NR_146453, exon 1 of 2) 473 NR_146453 100996478 Hs.434398 NR_146453 ENSG00000260840 LINC01964 - long intergenic non-protein coding RNA 1964 ncRNA 340.166 chr1 102305841 102306235 + 1.83333 NA Intergenic L1MCa|LINE|L1 -308804 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 264.834-3 chr17 64008609 64008893 + 1.83333 NA intron (NM_001099788, intron 1 of 5) intron (NM_001099788, intron 1 of 5) -1828 NM_000873 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 388.833 chr20 45069350 45069727 + 1.83333 NA intron (NM_001352385, intron 11 of 11) intron (NM_001352385, intron 11 of 11) 31589 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 431.332 chr11 14851099 14851410 + 1.83333 NA intron (NM_000922, intron 12 of 15) intron (NM_000922, intron 12 of 15) 40951 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 421.833-6 chr8 130576723 130577160 + 1.83333 NA Intergenic Intergenic -133267 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 347-19 chr3 177522624 177522935 + 1.83333 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 80858 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 288.666-12 chr8 123305187 123305369 + 1.83333 NA Intergenic L1MB3|LINE|L1 -29737 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 501.666 chr10 18141477 18141835 + 1.83333 NA intron (NM_001167945, intron 1 of 13) intron (NM_001167945, intron 1 of 13) 1232 NM_201572 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 243.667-33 chr4 37862638 37862895 + 1.83333 NA 3' UTR (NM_018290, exon 14 of 14) 3' UTR (NM_018290, exon 14 of 14) -28318 NM_001253912 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 249-26 chr4 32506669 32506870 + 1.83333 NA Intergenic THE1D-int|LTR|ERVL-MaLR 155731 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 177.5-23 chr16 62902496 62902600 + 1.83333 NA Intergenic Intergenic -866110 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 262.5-16 chr2 111242579 111242815 + 1.83333 NA intron (NR_015395, intron 3 of 6) L1MEf|LINE|L1 78389 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 418.667-4 chr18 7221277 7221623 + 1.83333 NA Intergenic L1MA6|LINE|L1 -9654 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 555 chr12 755945 756306 + 1.83333 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 3202 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 419.5-6 chr20 44204073 44204679 + 1.83333 NA intron (NM_016470, intron 2 of 3) intron (NM_016470, intron 2 of 3) 6395 NM_016470 51526 Hs.75798 NM_016470 ENSG00000132823 OSER1 C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1 oxidative stress responsive serine rich 1 protein-coding 228.666-10 chr6 146461568 146461738 + 1.83333 NA Intergenic L1MA4|LINE|L1 -82180 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 434.166-2 chr9 8466272 8466528 + 1.83333 NA intron (NM_130392, intron 15 of 30) intron (NM_130392, intron 15 of 30) 267546 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 495.833-4 chr7 29765786 29766256 + 1.83333 NA Intergenic MIR|SINE|MIR -40533 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 427.666-2 chr13 45370189 45370498 + 1.83333 NA intron (NR_024458, intron 4 of 10) intron (NR_024458, intron 4 of 10) 28998 NR_024458 100190939 Hs.375766 NR_024458 TPT1-AS1 - TPT1 antisense RNA 1 ncRNA 340.333-5 chr12 23877204 23877514 + 1.83333 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 72311 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 424.833 chr1 26323440 26323676 + 1.83333 NA intron (NM_001039775, intron 18 of 19) L2a|LINE|L2 -5293 NM_145345 91544 Hs.145061 NM_145345 ENSG00000158062 UBXN11 COA-1|PP2243|SOC|SOCI|UBXD5 UBX domain protein 11 protein-coding 652.501 chr2 162220922 162221578 + 1.83333 NA intron (NM_004460, intron 6 of 25) intron (NM_004460, intron 6 of 25) 22195 NM_001291807 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 293.834-5 chr3 152481233 152481546 + 1.83333 NA Intergenic L1PA16|LINE|L1 -140399 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 309.333-12 chr20 20052624 20052863 + 1.83333 NA promoter-TSS (NM_001278628) promoter-TSS (NM_001278628) 211 NM_015585 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 296.667-2 chr10 16569108 16569386 + 1.83333 NA Intergenic L1ME1|LINE|L1 -47368 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 376-9 chr7 52718633 52718904 + 1.83333 NA Intergenic Intergenic -316865 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 387.167-3 chr15 92775899 92776281 + 1.83333 NA Intergenic L1ME4b|LINE|L1 -19394 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 405.167-3 chr2 194741582 194741832 + 1.83333 NA intron (NR_110223, intron 2 of 3) intron (NR_110223, intron 2 of 3) 11112 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 463 chr1 161763329 161763999 + 1.83333 NA Intergenic MER49|LTR|ERV1 -2656 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 184-35 chr3 41382867 41383026 + 1.83333 NA intron (NM_001322500, intron 35 of 35) intron (NM_001322500, intron 35 of 35) 183441 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 245.333-30 chr9 130812657 130812828 + 1.83333 NA intron (NM_007313, intron 1 of 10) L1MEc|LINE|L1 -22512 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 656.666 chr8 124997873 124998556 + 1.83333 NA promoter-TSS (NM_003129) promoter-TSS (NM_003129) -16 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 173.333-15 chr2 69770186 69770446 + 1.83333 NA intron (NM_001365496, intron 2 of 13) intron (NM_001365496, intron 2 of 13) 28182 NM_001320702 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 479-6 chr2 112342017 112342370 + 1.83333 NA Intergenic Intergenic 66596 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 170.167-14 chr14 57045505 57045681 + 1.83333 NA Intergenic Intergenic 223312 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 214.333-33 chr4 86034399 86034581 + 1.83333 NA intron (NM_001363657, intron 11 of 13) intron (NM_001363657, intron 11 of 13) -85316 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 253.333-38 chr8 83645023 83645298 + 1.83333 NA Intergenic Intergenic 241402 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 391.333-5 chr4 109052518 109052775 + 1.83333 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 250012 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 438.833-2 chr8 103980696 103981083 + 1.83333 NA intron (NR_145711, intron 13 of 21) L1MA2|LINE|L1 161669 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 404.666-8 chr6 69835004 69835382 + 1.83333 NA Intergenic Intergenic -31363 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 225.334-3 chr14 42391078 42391289 + 1.83333 NA Intergenic Intergenic 784327 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 323.5 chr10 130229274 130229568 + 1.83333 NA Intergenic MER4D|LTR|ERV1 93012 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 294.5-28 chrX 112995384 112995680 + 1.83333 NA Intergenic LTR37A|LTR|ERV1 -47195 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 301.833-4 chr2 88323094 88323486 + 1.83333 NA Intergenic Intergenic 129403 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 444.334 chr14 69476659 69477086 + 1.83333 NA Intergenic THE1B|LTR|ERVL-MaLR -7856 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 232.666-9 chr5 9533318 9533589 + 1.83333 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 12622 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 202.333-32 chr7 92742861 92743032 + 1.83333 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 91013 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 274.667-15 chr2 204710234 204710439 + 1.83333 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 164861 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 268.5-14 chr18 5865217 5865472 + 1.83333 NA Intergenic MER41-int|LTR|ERV1 24649 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 275.333-16 chr7 42973354 42973611 + 1.83333 NA Intergenic L2c|LINE|L2 41106 NR_156497 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 597.5 chr14 39988702 39989161 + 1.83333 NA Intergenic Intergenic -556431 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 449.166-2 chr14 65388081 65388350 + 1.83333 NA Intergenic Intergenic -22377 NM_178155 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 382.833-6 chr8 86323639 86323881 + 1.83333 NA Intergenic Intergenic -18787 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 894.167 chr19 46402352 46403038 + 1.83333 NA Intergenic MER3|DNA|hAT-Charlie 10869 NM_032040 83987 Hs.97876 NM_032040 ENSG00000169515 CCDC8 3M3|PPP1R20|p90 coiled-coil domain containing 8 protein-coding 192.833-27 chr4 98618413 98618526 + 1.83333 NA intron (NM_005723, intron 1 of 7) intron (NM_005723, intron 1 of 7) 40142 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 304.5-7 chr10 98858691 98859068 + 1.83333 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 65689 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 200.833-9 chr11 15123921 15124071 + 1.83333 NA intron (NM_001042536, intron 1 of 12) intron (NM_001042536, intron 1 of 12) 9073 NM_001042536 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 565.832 chr2 95165426 95165781 + 1.83333 NA promoter-TSS (NM_001291605) promoter-TSS (NM_001291605) -206 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 233-30 chr7 15084442 15084681 + 1.83333 NA Intergenic Intergenic -109703 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 558.167-3 chr7 34395721 34396530 + 1.83333 NA intron (NR_033665, intron 3 of 3) ERV24_Prim-int|LTR|ERV1 -262093 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 323.5-4 chr15 41538770 41538983 + 1.83333 NA intron (NM_015540, intron 1 of 24) L1MB7|LINE|L1 5381 NM_015540 26015 Hs.371045 NM_015540 ENSG00000103932 RPAP1 - RNA polymerase II associated protein 1 protein-coding 277-3 chr1 36652196 36652447 + 1.83333 NA Intergenic Intergenic -169007 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 432.666-3 chr19 30784803 30785096 + 1.83333 NA Intergenic Intergenic -382561 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 279.833-15 chr6 60240135 60240523 + 1.83333 NA Intergenic ALR/Alpha|Satellite|centr -1333801 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 363.833-2 chr13 66835304 66835576 + 1.83333 NA intron (NR_046527, intron 1 of 5) intron (NR_046527, intron 1 of 5) 10271 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 433.667 chr3 39383941 39384359 + 1.83333 NA intron (NM_001354798, intron 1 of 5) CpG 780 NM_001354798 54977 Hs.369615 NM_017875 ENSG00000144659 SLC25A38 SIDBA2 solute carrier family 25 member 38 protein-coding 238.833-11 chr2 190547236 190547446 + 1.83333 NA Intergenic Intergenic -12619 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 358.833 chr14 20873841 20874083 + 1.83333 NA Intergenic Intergenic -17441 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 700.333-2 chr7 818170 818724 + 1.83333 NA intron (NM_001171945, intron 2 of 6) L1MB5|LINE|L1 1804 NM_001367694 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 206.333-4 chr1 56685713 56685837 + 1.83333 NA intron (NM_006252, intron 2 of 8) L1MC5|LINE|L1 -40457 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 396.833-4 chr10 29741715 29742375 + 1.83333 NA Intergenic MSTA1|LTR|ERVL-MaLR -5109 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 315.5-10 chr6 101395106 101395557 + 1.83333 NA Intergenic Intergenic -3654 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 291.499 chr12 10599922 10600152 + 1.83333 NA promoter-TSS (NR_028045) promoter-TSS (NR_028045) -202 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 253.333-29 chr5 26123687 26123858 + 1.83333 NA Intergenic L2a|LINE|L2 914814 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 231.833-3 chr12 52440975 52441145 + 1.83333 NA Intergenic Intergenic -6689 NM_004693 9119 Hs.697046 NM_004693 ENSG00000170454 KRT75 K6HF|KB18|PFB keratin 75 protein-coding 218.833-5 chr11 114828725 114828886 + 1.83333 NA Intergenic AluSg|SINE|Alu 150278 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 260.5-27 chr9 71894605 71894775 + 1.83333 NA intron (NM_001025780, intron 1 of 3) AluJo|SINE|Alu 16555 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 355.166-2 chr9 27823186 27823678 + 1.83333 NA Intergenic MER94|DNA|hAT-Blackjack -249566 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 568.667-3 chr9 29212144 29212923 + 1.83333 NA promoter-TSS (NM_001354575) promoter-TSS (NM_001354575) -234 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 340.834-8 chr4 112935379 112935625 + 1.83333 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) 74515 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 326.166 chr12 22037380 22037834 + 1.83333 NA Intergenic (ATATTTC)n|Simple_repeat|Simple_repeat -8567 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 504.333-3 chr3 197043585 197044237 + 1.83333 NA non-coding (NR_158767, exon 23 of 23) non-coding (NR_158767, exon 23 of 23) -14094 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 231.999 chr15 96171973 96172165 + 1.83333 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -44228 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 502.667-3 chr3 12562582 12563474 + 1.83333 NA intron (NM_001271707, intron 1 of 6) MER1A|DNA|hAT-Charlie 5941 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 332.5-13 chr7 29619263 29619495 + 1.83333 NA Intergenic L2|LINE|L2 53846 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 389.333-2 chr17 11936015 11936387 + 1.83333 NA intron (NM_001372, intron 65 of 68) intron (NM_001372, intron 65 of 68) 53299 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 249.833-9 chr18 64411152 64411357 + 1.83333 NA intron (NR_033881, intron 6 of 9) intron (NR_033881, intron 6 of 9) -151199 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 321.5-10 chr2 46604902 46605178 + 1.83333 NA intron (NM_173074, intron 4 of 6) intron (NM_173074, intron 4 of 6) 12001 NM_002643 5281 Hs.468415 NM_002643 ENSG00000151665 PIGF - phosphatidylinositol glycan anchor biosynthesis class F protein-coding 394.999 chr11 5431178 5431403 + 1.83333 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 9179 NM_001004757 390061 Hs.528592 NM_001004757 ENSG00000167360 OR51Q1 - olfactory receptor family 51 subfamily Q member 1 (gene/pseudogene) protein-coding 324.333-10 chr8 81731988 81732234 + 1.83333 NA promoter-TSS (NM_152284) promoter-TSS (NM_152284) -337 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 257-28 chr5 130057261 130057509 + 1.83333 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 152920 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 533-4 chr4 80365519 80366512 + 1.83333 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 30295 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 361.5-12 chr4 33169330 33169724 + 1.83333 NA Intergenic L1MD1|LINE|L1 818489 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 199.833-15 chr15 77742155 77742304 + 1.83333 NA intron (NM_001301186, intron 2 of 5) intron (NM_001301186, intron 2 of 5) -21478 NM_001301197 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 433-5 chr15 58933678 58934023 + 1.83333 NA promoter-TSS (NR_135043) promoter-TSS (NR_135043) -171 NM_024755 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 252.333-2 chr1 203003840 203004174 + 1.83333 NA intron (NR_036557, intron 1 of 4) intron (NR_036557, intron 1 of 4) 3258 NR_036557 100506747 Hs.642024 NR_036557 LOC100506747 - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog pseudo 240-56 chr8 73990726 73990950 + 1.83333 NA promoter-TSS (NM_015364) promoter-TSS (NM_015364) -491 NM_001195797 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 390.333-2 chr1 43648241 43648567 + 1.83333 NA Intergenic MLT1N2|LTR|ERVL-MaLR -1745 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 343.833-6 chr19 18168117 18168322 + 1.83333 NA intron (NR_162071, intron 12 of 14) intron (NR_162071, intron 12 of 14) -5594 NM_006332 10437 Hs.14623 NM_006332 ENSG00000216490 IFI30 GILT|IFI-30|IP-30|IP30 IFI30 lysosomal thiol reductase protein-coding 484.333-2 chr15 62161690 62162508 + 1.83333 NA Intergenic Intergenic 3186 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 256.333-26 chr9 28136509 28136768 + 1.83333 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -562772 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 325.499 chr14 31987004 31987326 + 1.83333 NA Intergenic L1MEf|LINE|L1 42312 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 524.167 chr2 138373185 138373601 + 1.83333 NA Intergenic Intergenic -128377 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 404.167-5 chr12 66432323 66432746 + 1.83333 NA intron (NM_001366722, intron 14 of 24) intron (NM_001366722, intron 14 of 24) 129989 NM_033647 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 622.833 chr13 76980247 76980846 + 1.83333 NA Intergenic Intergenic -11535 NM_001366624 1203 Hs.30213 NM_006493 ENSG00000102805 CLN5 - CLN5 intracellular trafficking protein protein-coding 213-9 chr11 67175218 67175469 + 1.83333 NA intron (NR_027473, intron 2 of 20) AluJb|SINE|Alu 56080 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 229.334-7 chr3 137287079 137287356 + 1.83333 NA Intergenic L1MEc|LINE|L1 329234 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 322.666-10 chr5 73311400 73311605 + 1.83333 NA Intergenic Intergenic -26404 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 358-5 chr16 66344498 66344967 + 1.83333 NA Intergenic Intergenic -21959 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 718.5-7 chr7 18356963 18357901 + 1.83333 NA intron (NM_001321896, intron 1 of 12) L2b|LINE|L2 67340 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 194.666-7 chr2 18544530 18544669 + 1.83333 NA Intergenic Intergenic 16054 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 370.167-10 chr9 28951829 28952148 + 1.83333 NA intron (NM_001354574, intron 1 of 5) L1PA8A|LINE|L1 -63033 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 277.5-21 chr7 48425488 48425722 + 1.83333 NA intron (NM_152701, intron 41 of 61) intron (NM_152701, intron 41 of 61) 254147 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 174.166-2 chr22 31121952 31122103 + 1.83333 NA promoter-TSS (NM_001284289) promoter-TSS (NM_001284289) -896 NM_001284286 27124 Hs.517549 NM_014422 ENSG00000185133 INPP5J INPP5|PIB5PA|PIPP inositol polyphosphate-5-phosphatase J protein-coding 259.167-15 chr6 98424676 98424919 + 1.83333 NA Intergenic Intergenic 400266 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 410.667-4 chr15 99924552 99925134 + 1.83333 NA Intergenic Intergenic 117820 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 429.999-2 chr4 14726972 14727269 + 1.83333 NA intron (NR_126435, intron 2 of 6) intron (NR_126435, intron 2 of 6) 161049 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 435.666-4 chr19 44903731 44903985 + 1.83333 NA TTS (NM_001128917) TTS (NM_001128917) -1938 NM_001302688 348 Hs.654439 NM_000041 ENSG00000130203 APOE AD2|APO-E|ApoE4|LDLCQ5|LPG apolipoprotein E protein-coding 394.666-2 chr5 27878582 27878955 + 1.83333 NA Intergenic L1MC1|LINE|L1 406476 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 338.5-5 chr2 25309178 25309934 + 1.83333 NA intron (NR_135490, intron 2 of 23) intron (NR_135490, intron 2 of 23) 19165 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 211.833-14 chr20 62703549 62703738 + 1.83333 NA Intergenic Intergenic -5193 NM_002531 4923 Hs.590869 NM_002531 ENSG00000101188 NTSR1 NTR neurotensin receptor 1 protein-coding 249.167-28 chr7 88831827 88832067 + 1.83333 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -36210 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 356.5-3 chr13 46831729 46832044 + 1.83333 NA 3' UTR (NM_000621, exon 4 of 4) 3' UTR (NM_000621, exon 4 of 4) -20254 NR_046612 100874082 Hs.569281 NR_046612 ENSG00000224517 HTR2A-AS1 - HTR2A antisense RNA 1 ncRNA 440.499 chr20 40965812 40966252 + 1.83333 NA Intergenic Intergenic -14681 NR_145524 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 201.5-36 chr8 99681269 99681402 + 1.83333 NA intron (NM_017890, intron 35 of 61) intron (NM_017890, intron 35 of 61) -144474 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 254.333-8 chr12 12333491 12333894 + 1.83333 NA intron (NM_001363613, intron 4 of 4) intron (NM_001363613, intron 4 of 4) 16550 NM_018050 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 170.5-44 chr8 53999920 54000060 + 1.83333 NA non-coding (NR_109901, exon 4 of 12) non-coding (NR_109901, exon 4 of 12) 22458 NR_109901 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 493.333-5 chr5 21582102 21582567 + 1.83333 NA intron (NR_027026, intron 4 of 4) intron (NR_027026, intron 4 of 4) 122854 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 265-15 chr3 56928628 56928885 + 1.83333 NA intron (NM_001128615, intron 3 of 12) intron (NM_001128615, intron 3 of 12) -11284 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 202.666-5 chr14 71963891 71964106 + 1.83333 NA intron (NM_001370288, intron 1 of 16) L1MB5|LINE|L1 30471 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 544.999 chr1 23577782 23578255 + 1.83333 NA Intergenic L2c|LINE|L2 -18517 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 416.833-3 chr2 30072195 30072775 + 1.83333 NA Intergenic Intergenic -74522 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 296.833-5 chr13 19864979 19865208 + 1.83333 NA Intergenic Intergenic -1444 NM_001142684 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 212.333-21 chr4 65991201 65991583 + 1.83333 NA Intergenic L1MC5a|LINE|L1 -285432 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 453.666-2 chr18 41546319 41546732 + 1.83333 NA Intergenic Intergenic -25848 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 436.166 chr6 79488782 79489107 + 1.83333 NA intron (NM_001122769, intron 7 of 7) intron (NM_001122769, intron 7 of 7) 48486 NM_001122769 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 lebercilin LCA5 protein-coding 583.499 chr17 59912069 59912624 + 1.83333 NA intron (NR_161462, intron 2 of 13) intron (NR_161462, intron 2 of 13) 19225 NR_161458 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 235.5-18 chr5 152067417 152067669 + 1.83333 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 108645 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 274.833-13 chr5 91552610 91552864 + 1.83333 NA Intergenic Intergenic -169420 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 484.666 chr7 30581952 30582273 + 1.83333 NA Intergenic MER4-int|LTR|ERV1 -4333 NR_038889 401320 Hs.561708 NR_038889 GARS-DT - GARS divergent transcript ncRNA 215.333 chr1 40219473 40219600 + 1.83333 NA intron (NM_012421, intron 5 of 7) intron (NM_012421, intron 5 of 7) -28401 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 526.332 chr15 38179644 38179973 + 1.83333 NA Intergenic L1M5|LINE|L1 -73028 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 586.166 chr5 146577956 146578583 + 1.83333 NA Intergenic L1ME3B|LINE|L1 -62156 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 278.666-4 chr14 65090903 65091175 + 1.83333 NA intron (NR_045122, intron 2 of 2) intron (NR_045122, intron 2 of 2) 1121 NR_045122 100506321 Hs.711267 NR_045122 ENSG00000259118 LOC100506321 - uncharacterized LOC100506321 ncRNA 329.5-12 chr2 48037572 48037859 + 1.83333 NA Intergenic Intergenic -131922 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 254.667-25 chr4 83014881 83015135 + 1.83333 NA Intergenic L1M5|LINE|L1 -2067 NM_001115007 132660 Hs.96952 NM_194282 ENSG00000189308 LIN54 CXCDC1|JC8.6|MIP120|TCX1 lin-54 DREAM MuvB core complex component protein-coding 208.833-14 chr17 72389435 72389644 + 1.83333 NA Intergenic MLT1D|LTR|ERVL-MaLR 46728 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 183-24 chr19 47256841 47257035 + 1.83333 NA intron (NM_015603, intron 1 of 11) CpG 413 NM_015603 26093 Hs.227782 NM_015603 ENSG00000105321 CCDC9 - coiled-coil domain containing 9 protein-coding 542.167-3 chr3 196665725 196666298 + 1.83333 NA Intergenic LTR33|LTR|ERVL 26317 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 243.334-5 chr17 80075840 80076028 + 1.83333 NA intron (NM_017950, intron 10 of 19) Tigger1|DNA|TcMar-Tigger -22894 NR_039607 100616121 NR_039607 ENSG00000265561 MIR1268B - microRNA 1268b ncRNA 327.5-7 chr14 79430445 79430799 + 1.83333 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 151242 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 288.834 chr1 180802564 180803124 + 1.83333 NA intron (NR_137330, intron 3 of 12) L1MB7|LINE|L1 -110053 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 174-4 chr10 23150402 23150571 + 1.83333 NA Intergenic MIR|SINE|MIR -41826 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 578.167 chr12 6873310 6874134 + 1.83333 NA promoter-TSS (NM_032641) promoter-TSS (NM_032641) -419 NM_032641 84727 Hs.479856 NM_032641 ENSG00000111671 SPSB2 GRCC9|SSB2 splA/ryanodine receptor domain and SOCS box containing 2 protein-coding 190.833-13 chr17 58592886 58593024 + 1.83333 NA intron (NM_031272, intron 15 of 31) (TA)n|Simple_repeat|Simple_repeat -48627 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 352-15 chr8 128227120 128227359 + 1.83333 NA Intergenic Intergenic 77123 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 468.5 chr4 78101141 78101611 + 1.83333 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 43806 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 394.166-2 chr3 191416442 191416771 + 1.83333 NA Intergenic MER33|DNA|hAT-Charlie -8918 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 511-2 chr8 90467571 90468314 + 1.83333 NA Intergenic Intergenic 138121 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 537.667-4 chr19 57103914 57104436 + 1.83333 NA Intergenic Intergenic -15966 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 746.166-2 chr20 49278158 49278635 + 1.83333 NA promoter-TSS (NR_036659) promoter-TSS (NR_036659) 218 NR_036658 441951 Hs.356766 NR_003604 ENSG00000177410 ZFAS1 C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1 ZNFX1 antisense RNA 1 ncRNA 317.666-5 chr19 48954663 48954836 + 1.83333 NA promoter-TSS (NM_138764) promoter-TSS (NM_138764) -111 NM_001291430 581 Hs.624291 NM_004324 ENSG00000087088 BAX BCL2L4 BCL2 associated X, apoptosis regulator protein-coding 317.833-8 chr2 31354808 31354987 + 1.83333 NA intron (NM_000379, intron 24 of 35) L1MDa|LINE|L1 59845 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 196.833-17 chr3 188684964 188685072 + 1.83333 NA intron (NM_005578, intron 6 of 10) MIR|SINE|MIR -3763 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 250.5-23 chr8 30346876 30347143 + 1.83333 NA Intergenic L1MD2|LINE|L1 -37492 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 285.833-5 chr14 44903516 44903693 + 1.83333 NA intron (NM_001017923, intron 3 of 4) intron (NM_001017923, intron 3 of 4) 6329 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 524.834 chr1 175319457 175320216 + 1.83333 NA 3' UTR (NM_001328635, exon 23 of 23) 3' UTR (NM_001328635, exon 23 of 23) -126849 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 288.167-4 chr10 119489763 119490138 + 1.83333 NA Intergenic Intergenic 46583 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 257-33 chr7 48668601 48668883 + 1.83333 NA Intergenic HUERS-P1-int|LTR|ERV1 -255805 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 468.834 chr1 77138115 77138713 + 1.83333 NA intron (NM_005482, intron 9 of 10) MLT1E1A|LTR|ERVL-MaLR 78271 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 236-25 chr7 78505511 78505706 + 1.83333 NA intron (NM_001301128, intron 4 of 20) L2b|LINE|L2 158366 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 256.333-17 chr5 28031743 28032019 + 1.83333 NA Intergenic L1M1|LINE|L1 255784 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 323.667-19 chr3 101373501 101373760 + 1.83333 NA intron (NM_001282803, intron 3 of 20) intron (NM_001282803, intron 3 of 20) -53055 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 330.833-3 chr11 120973038 120973480 + 1.83333 NA intron (NM_001282470, intron 18 of 19) intron (NM_001282470, intron 18 of 19) -15220 NR_133004 101929208 Hs.662310 NR_133004 LOC101929208 - uncharacterized LOC101929208 ncRNA 356.5-2 chr11 17738371 17738810 + 1.83333 NA intron (NM_001112741, intron 1 of 3) intron (NM_001112741, intron 1 of 3) 2642 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 225.833-25 chr8 81774949 81775114 + 1.83333 NA Intergenic Intergenic 42583 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 444-5 chr2 143974412 143974726 + 1.83333 NA intron (NM_001354353, intron 7 of 9) intron (NM_001354353, intron 7 of 9) 37502 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 454.999-3 chr5 180606086 180606375 + 1.83333 NA intron (NM_182925, intron 29 of 29) intron (NM_182925, intron 29 of 29) -14731 NM_052863 92304 Hs.62492 NM_052863 ENSG00000161055 SCGB3A1 HIN-1|HIN1|LU105|PnSP-2|UGRP2 secretoglobin family 3A member 1 protein-coding 310.166-4 chr5 141960924 141961151 + 1.83333 NA Intergenic Intergenic -1975 NM_016580 51294 Hs.439474 NM_016580 ENSG00000113555 PCDH12 VE-cadherin-2|VECAD2 protocadherin 12 protein-coding 337.666 chr15 61227242 61227468 + 1.83333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 1947 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 453.999-2 chr17 49846584 49846877 + 1.83333 NA intron (NM_001242791, intron 2 of 2) intron (NM_001242791, intron 2 of 2) 820 NM_001242791 729220 Hs.434138 NM_001242791 FLJ45513 - uncharacterized LOC729220 protein-coding 332-25 chr7 35329728 35329968 + 1.83333 NA intron (NR_038864, intron 1 of 2) L1ME4a|LINE|L1 15993 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 359-9 chr22 26887713 26888027 + 1.83333 NA Intergenic L2c|LINE|L2 -15422 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 282.333-5 chr17 25920095 25920366 + 1.83333 NA Intergenic ALR/Alpha|Satellite|centr 1169011 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 338.666-5 chr5 63349233 63349575 + 1.83333 NA Intergenic Intergenic 612888 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 217.333-3 chr1 179706486 179706780 + 1.83333 NA Intergenic Intergenic -21143 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 397.667-5 chr17 57114171 57114650 + 1.83333 NA intron (NM_003488, intron 5 of 10) intron (NM_003488, intron 5 of 10) 18921 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 335.499 chr5 80329818 80330166 + 1.83333 NA Intergenic Intergenic 9990 NM_032567 84654 Hs.519403 NM_032567 ENSG00000164299 SPZ1 CILD38|NYD-TSP1|PPP1R148 spermatogenic leucine zipper 1 protein-coding 256.666-4 chr3 41680079 41680233 + 1.83333 NA intron (NR_136342, intron 27 of 34) intron (NR_136342, intron 27 of 34) 281947 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 347.333-16 chr6 69487684 69487948 + 1.83333 NA Intergenic Intergenic 308650 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 275-8 chr14 71714650 71714839 + 1.83333 NA intron (NM_001354286, intron 18 of 24) AluJb|SINE|Alu 128446 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 180.333-15 chr13 48555508 48555616 + 1.83333 NA Intergenic L1MEd|LINE|L1 -19667 NM_001352429 1102 Hs.652712 NM_001268 ENSG00000136161 RCBTB2 CHC1L|RLG RCC1 and BTB domain containing protein 2 protein-coding 428.166 chr8 86712310 86712707 + 1.83333 NA intron (NM_019098, intron 3 of 17) L1M5|LINE|L1 31167 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 284.5-9 chr16 24582267 24582474 + 1.83333 NA Intergenic AluSz|SINE|Alu -27835 NM_001351850 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 742.166 chr7 1432218 1433037 + 1.83333 NA Intergenic Intergenic 26843 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 248.666-10 chrX 143664468 143664698 + 1.83333 NA Intergenic Intergenic -28482 NM_001184749 139065 Hs.272284 NM_173078 ENSG00000179542 SLITRK4 - SLIT and NTRK like family member 4 protein-coding 342.833-16 chr5 57302115 57302329 + 1.83333 NA Intergenic THE1C|LTR|ERVL-MaLR 88148 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 285.499 chr1 167392974 167393155 + 1.83333 NA intron (NM_001198783, intron 9 of 15) intron (NM_001198783, intron 9 of 15) 63994 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 543.499 chr20 11109580 11109876 + 1.83333 NA Intergenic AluSx|SINE|Alu 83184 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 316.333-16 chr20 63946128 63946436 + 1.83333 NA intron (NR_148442, intron 2 of 15) intron (NR_148442, intron 2 of 15) -3556 NR_030377 693232 NR_030377 ENSG00000207554 MIR647 MIRN647|hsa-mir-647 microRNA 647 ncRNA 930.5-2 chr16 66406374 66407048 + 1.83333 NA Intergenic CpG -1813 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 603.665 chr4 68226997 68227534 + 1.83333 NA 3' UTR (NM_182502, exon 10 of 10) 3' UTR (NM_182502, exon 10 of 10) -9185 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 350.333-7 chr5 38259372 38259670 + 1.83333 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) 962 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 379.666-2 chr18 64097650 64097890 + 1.83333 NA intron (NR_027245, intron 3 of 3) intron (NR_027245, intron 3 of 3) -6321 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 374-5 chr4 47032566 47033085 + 1.83333 NA intron (NM_000812, intron 3 of 8) CpG-21171 1258 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 289.834-3 chr14 95099126 95099443 + 1.83333 NA intron (NM_001291628, intron 22 of 26) intron (NM_001291628, intron 22 of 26) 34219 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 378.833-5 chr17 76671663 76672027 + 1.83333 NA promoter-TSS (NR_130916) promoter-TSS (NR_130916) -83 NR_130916 105274304 Hs.572495 NR_130916 ENSG00000261335 LOC105274304 - uncharacterized LOC105274304 ncRNA 672.667-2 chr5 115097675 115098331 + 1.83333 NA Intergenic Intergenic 71905 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 275.5-6 chr10 70255869 70256140 + 1.83333 NA intron (NM_022146, intron 3 of 3) intron (NM_022146, intron 3 of 3) -22575 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 326.333-11 chrX 50778868 50779165 + 1.83333 NA intron (NR_027121, intron 1 of 9) MIR|SINE|MIR 35028 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 423.333-11 chr8 85906352 85906691 + 1.83333 NA Intergenic MIRb|SINE|MIR -78579 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 368.167-4 chr14 65940210 65940483 + 1.83333 NA Intergenic Intergenic 469244 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 449.166 chr1 76939171 76939484 + 1.83333 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 71847 NM_001320273 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 273.834-4 chr2 200920449 200920718 + 1.83333 NA intron (NR_033915, intron 14 of 16) intron (NR_033915, intron 14 of 16) 28665 NM_001142356 60491 Hs.145284 NM_021824 ENSG00000196290 NIF3L1 ALS2CR1|CALS-7|MDS015 NGG1 interacting factor 3 like 1 protein-coding 354.833-4 chr3 152269772 152270216 + 1.83333 NA promoter-TSS (NR_027037) promoter-TSS (NR_027037) -368 NR_027038 401093 Hs.725347 NR_027037 ENSG00000229619 MBNL1-AS1 - MBNL1 antisense RNA 1 ncRNA 388.333-5 chr14 60693684 60694000 + 1.83333 NA Intergenic L1MA5A|LINE|L1 30509 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 230.333-35 chrX 68250917 68251250 + 1.83333 NA intron (NM_002547, intron 5 of 24) L3b|LINE|CR1 182412 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 491.666 chr14 57059880 57060169 + 1.83333 NA Intergenic Intergenic 208881 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 293.333-16 chr3 107479018 107479274 + 1.83333 NA Intergenic L1MB8|LINE|L1 -43816 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 307.833-3 chr14 21990823 21991099 + 1.83333 NA Intergenic Intergenic -319944 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 562-3 chr7 14717613 14718266 + 1.83333 NA intron (NM_001350717, intron 6 of 24) intron (NM_001350717, intron 6 of 24) 123511 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 381.833 chr1 166167532 166167748 + 1.83333 NA promoter-TSS (NM_001320302) promoter-TSS (NM_001320302) -885 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 287.833-5 chr15 34276619 34276878 + 1.83333 NA intron (NM_001042496, intron 2 of 25) Charlie4a|DNA|hAT-Charlie 42072 NM_005135 9990 Hs.510939 NM_005135 ENSG00000140199 SLC12A6 ACCPN|KCC3|KCC3A|KCC3B solute carrier family 12 member 6 protein-coding 366.499 chr8 21425431 21425799 + 1.83333 NA Intergenic L1M6|LINE|L1 127376 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 320.333-5 chr4 16718045 16718369 + 1.83333 NA intron (NM_001304435, intron 2 of 7) L2b|LINE|L2 180438 NM_001130834 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 535.166-2 chr17 74744284 74745027 + 1.83333 NA intron (NM_175738, intron 6 of 8) intron (NM_175738, intron 6 of 8) -3958 NR_037409 100500847 NR_037409 ENSG00000284186 MIR3615 mir-3615 microRNA 3615 ncRNA 1006.83-2 chr19 16182507 16183673 + 1.83333 NA Intergenic Intergenic -2320 NM_014077 26017 Hs.631614 NM_014077 ENSG00000105058 FAM32A OTAG-12|OTAG12 family with sequence similarity 32 member A protein-coding 590.499 chr15 64789688 64790132 + 1.83333 NA Intergenic Intergenic -14321 NR_138350 348093 Hs.436518 NM_194272 ENSG00000166831 RBPMS2 - RNA binding protein, mRNA processing factor 2 protein-coding 288.834-6 chr4 99958352 99958741 + 1.83333 NA intron (NR_125923, intron 1 of 3) L1PA5|LINE|L1 8052 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 272.667-5 chr1 158384395 158384671 + 1.83333 NA Intergenic L1M5|LINE|L1 14933 NM_001004475 128360 Hs.553588 NM_001004475 ENSG00000186306 OR10T2 OR1-3 olfactory receptor family 10 subfamily T member 2 protein-coding 407.499 chr20 561647 562114 + 1.83333 NA Intergenic Intergenic -18090 NM_001895 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 295.501-3 chr2 97664826 97665162 + 1.83333 NA promoter-TSS (NM_005735) promoter-TSS (NM_005735) -950 NM_005735 10120 Hs.98791 NM_005735 ENSG00000115073 ACTR1B ARP1B|CTRN2|PC3 actin related protein 1B protein-coding 427-8 chr3 61946461 61946945 + 1.83333 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 372244 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 347.166 chr10 33347374 33347576 + 1.83333 NA Intergenic Intergenic -12570 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 186.667-23 chr14 45185044 45185201 + 1.83333 NA intron (NM_001308133, intron 16 of 21) intron (NM_001308133, intron 16 of 21) 49183 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 265.334-2 chr1 111595055 111595290 + 1.83333 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) 13146 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 246.833-6 chr17 59728876 59729091 + 1.83333 NA intron (NM_001329394, intron 1 of 11) L1MB3|LINE|L1 21329 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 301.833-14 chr7 137902517 137902728 + 1.83333 NA intron (NM_001318246, intron 7 of 11) MER2|DNA|TcMar-Tigger 30366 NM_001318246 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 262.666-3 chr18 41331350 41331590 + 1.83333 NA Intergenic L2a|LINE|L2 189207 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 201.833-3 chr10 59395298 59395453 + 1.83333 NA Intergenic L1M4|LINE|L1 -32194 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 179.833-20 chr2 201652534 201652632 + 1.83333 NA intron (NM_033066, intron 18 of 21) LTR78|LTR|ERV1 -9080 NM_001044385 65062 Hs.12319 NM_152388 ENSG00000155755 TMEM237 ALS2CR4|JBTS14 transmembrane protein 237 protein-coding 257-15 chr17 77009733 77009950 + 1.83333 NA Intergenic L1MEd|LINE|L1 -40642 NR_136417 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 177.5-37 chr3 58683163 58683294 + 1.83333 NA Intergenic L2c|LINE|L2 -16454 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 482.167 chr2 154622307 154622821 + 1.83333 NA Intergenic Intergenic -76017 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 207-25 chr6 9482052 9482314 + 1.83333 NA Intergenic Intergenic 829974 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 264.5-26 chr8 56189350 56189597 + 1.83333 NA intron (NM_002655, intron 1 of 4) intron (NM_002655, intron 1 of 4) 21800 NM_001114635 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 355.667-13 chr6 28350547 28351301 + 1.83333 NA intron (NM_001242894, intron 2 of 6) intron (NM_001242894, intron 2 of 6) 977 NM_024493 80317 Hs.380930 NM_024493 ENSG00000189298 ZKSCAN3 ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47 zinc finger with KRAB and SCAN domains 3 protein-coding 192.167-43 chr9 114691232 114691350 + 1.83333 NA Intergenic Intergenic -9202 NM_001199233 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 317.833-2 chr12 9765331 9765632 + 1.83333 NA Intergenic Intergenic -4580 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 270.666-6 chr2 71370426 71370643 + 1.83333 NA intron (NM_001252613, intron 8 of 27) intron (NM_001252613, intron 8 of 27) 38752 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 239.666 chr18 9821139 9821340 + 1.83333 NA intron (NM_006868, intron 5 of 6) L1MB2|LINE|L1 -64734 NM_001098529 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 340.167-4 chr18 5082328 5082566 + 1.83333 NA intron (NR_146900, intron 1 of 3) MIRb|SINE|MIR 1265 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 730.666 chr5 14105889 14106555 + 1.83333 NA Intergenic Intergenic -37120 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 237.5-40 chr7 94295904 94296104 + 1.83333 NA Intergenic Intergenic 96188 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 355.334-7 chr21 24710390 24711002 + 1.83333 NA Intergenic L1PA16|LINE|L1 -129854 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 397.5-6 chr11 67353369 67353812 + 1.83333 NA promoter-TSS (NM_001256870) promoter-TSS (NM_001256870) 6 NR_046412 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 427.833-5 chr2 226151296 226151692 + 1.83333 NA intron (NR_046102, intron 2 of 6) intron (NR_046102, intron 2 of 6) 8700 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 419.667-4 chr22 21090708 21091103 + 1.83333 NA Intergenic Intergenic -12111 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 BCR pseudogene 2 pseudo 629.166 chr1 110615679 110616408 + 1.83333 NA intron (NM_001204269, intron 1 of 4) intron (NM_001204269, intron 1 of 4) -9685 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 280.5-16 chr3 118817863 118818117 + 1.83333 NA Intergenic Intergenic -7157 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 230.333-23 chr21 38352840 38353071 + 1.83333 NA Intergenic Intergenic -6879 NR_110545 102724678 Hs.635675 NR_110545 LINC01423 - long intergenic non-protein coding RNA 1423 ncRNA 324.999 chr18 5885529 5885715 + 1.83333 NA Intergenic Intergenic 10332 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 175.166-2 chr20 58915066 58915217 + 1.83333 NA Intergenic Intergenic 22978 NR_132272 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 255.833 chr1 235328230 235328492 + 1.83333 NA promoter-TSS (NR_036605) promoter-TSS (NR_036605) -77 NM_001037277 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 327.999-2 chr8 58753895 58754208 + 1.83333 NA Intergenic (AAAAC)n|Simple_repeat|Simple_repeat -94198 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 327.333-9 chr2 111134147 111134385 + 1.83333 NA intron (NM_138625, intron 3 of 4) L1MD2|LINE|L1 13352 NM_207003 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 274.167-18 chr7 70849420 70849717 + 1.83333 NA Intergenic HERVIP10F-int|LTR|ERV1 -282576 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 366.167-6 chr5 127348632 127348995 + 1.83333 NA intron (NM_001308121, intron 4 of 13) MamRep1151|LTR?|LTR? 58017 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 327.999 chr6 38739533 38739832 + 1.83333 NA intron (NM_001371, intron 6 of 91) L1ME3B|LINE|L1 24371 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 253.166-3 chr10 120221775 120222062 + 1.83333 NA Intergenic Intergenic 133305 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 270-16 chr15 67128034 67128206 + 1.83333 NA intron (NM_001145102, intron 1 of 8) intron (NM_001145102, intron 1 of 8) 2404 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 389.166 chr14 60146197 60146564 + 1.83333 NA 3' UTR (NM_001330177, exon 11 of 11) 3' UTR (NM_001330177, exon 11 of 11) 19018 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 587.667-4 chr3 58532347 58532991 + 1.83333 NA intron (NM_003500, intron 5 of 14) AluSx1|SINE|Alu 4521 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|CBAS6|THCCox acyl-CoA oxidase 2 protein-coding 222-17 chr17 12162773 12162957 + 1.83333 NA Intergenic L1PA16|LINE|L1 80966 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 261.333 chr10 61400568 61400784 + 1.83333 NA Intergenic Intergenic -51963 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 398-12 chr2 149328631 149329214 + 1.83333 NA Intergenic Intergenic -1063 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 229.666-3 chr10 48369729 48369936 + 1.83333 NA intron (NM_001323302, intron 3 of 13) L2b|LINE|L2 -31780 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 346-9 chr6 34717653 34717955 + 1.83333 NA Intergenic L1MA10|LINE|L1 20859 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 279.833-6 chr2 101399383 101399558 + 1.83333 NA intron (NM_001367510, intron 10 of 10) X6A_LINE|LINE|CR1 -11967 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 269.833-12 chr8 105521252 105521496 + 1.83333 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 201831 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 252.666-8 chr5 10703076 10703326 + 1.83333 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 58033 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 415.334-8 chr3 62560029 62560375 + 1.83333 NA intron (NM_003716, intron 9 of 29) intron (NM_003716, intron 9 of 29) -186652 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 193.334-11 chr4 30847484 30847643 + 1.83333 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 127194 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 184.5-12 chr11 20126002 20126160 + 1.83333 NA Intergenic LTR16C|LTR|ERVL 34394 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 446.167 chr1 217334098 217334614 + 1.83333 NA Intergenic Intergenic -196654 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 204.834-10 chr5 107455203 107455443 + 1.83333 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 215614 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 362.5 chr1 6404692 6405057 + 1.83333 NA Intergenic Intergenic -11108 NM_007274 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 425.999-2 chr8 116936381 116936718 + 1.83333 NA Intergenic Intergenic -1658 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 342.333-3 chr14 83766025 83766354 + 1.83333 NA Intergenic Intergenic 1123557 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 233.666-4 chr3 18375136 18375266 + 1.83333 NA intron (NM_001131010, intron 9 of 10) intron (NM_001131010, intron 9 of 10) 50138 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 279.5-9 chr17 67354052 67354438 + 1.83333 NA intron (NM_174871, intron 2 of 9) AluJo|SINE|Alu 12332 NM_001316341 5718 Hs.4295 NM_002816 ENSG00000197170 PSMD12 Rpn5|STISS|p55 proteasome 26S subunit, non-ATPase 12 protein-coding 792.999 chrX 63250012 63250868 + 1.83333 NA Intergenic Intergenic 100892 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 182.833-31 chr5 163696016 163696486 + 1.83333 NA Intergenic Intergenic 190632 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 344-14 chr4 27010508 27010800 + 1.83333 NA intron (NM_001169118, intron 11 of 12) HAL1ME|LINE|L1 149813 NM_020860 57620 Hs.744950 NM_020860 ENSG00000109689 STIM2 - stromal interaction molecule 2 protein-coding 334.834-4 chr2 78911503 78911914 + 1.83333 NA Intergenic Intergenic -113994 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 277.5-2 chr1 196546934 196547120 + 1.83333 NA intron (NM_001287820, intron 1 of 26) HAL1b|LINE|L1 35454 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 212.333-7 chr11 25863386 25863584 + 1.83333 NA Intergenic MER113|DNA|hAT-Charlie -325638 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 276.5-19 chr8 102729831 102730146 + 1.83333 NA Intergenic Intergenic 73740 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 460.499-2 chr11 73889311 73889882 + 1.83333 NA intron (NM_001363556, intron 1 of 9) intron (NM_001363556, intron 1 of 9) 815 NM_001363556 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 470.5-7 chr4 38045405 38045975 + 1.83333 NA intron (NM_001253912, intron 9 of 20) intron (NM_001253912, intron 9 of 20) -64491 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 370.667 chr11 82572059 82572472 + 1.83333 NA Intergenic L1ME3F|LINE|L1 161599 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 396.5-7 chr7 7543686 7544171 + 1.83333 NA Intergenic Intergenic -8055 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 298.833-5 chr14 40305166 40305369 + 1.83333 NA Intergenic Intergenic -649444 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 234.666-8 chr6 62284821 62285228 + 1.83333 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 1201 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 284.5-15 chr3 141366565 141366817 + 1.83333 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) -19734 NM_001350099 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 192.833-2 chr1 172002682 172002981 + 1.83333 NA intron (NM_001278252, intron 4 of 14) intron (NM_001278252, intron 4 of 14) -135977 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 337.5-7 chr7 53240618 53240950 + 1.83333 NA Intergenic L1MD3|LINE|L1 205151 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 256.667-26 chr7 133814420 133814611 + 1.83333 NA intron (NR_120513, intron 3 of 3) L1ME4b|LINE|L1 10373 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 470.999-2 chr16 52068374 52068657 + 1.83333 NA intron (NM_001242473, intron 1 of 5) intron (NM_001242473, intron 1 of 5) 5420 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 308.833-8 chr15 71701538 71701880 + 1.83333 NA intron (NM_001286429, intron 2 of 11) L1ME4a|LINE|L1 -10170 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 221.667-7 chr10 55047289 55047453 + 1.83333 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -246080 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 279.833-8 chr2 195319067 195319355 + 1.83333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -337747 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 310.333-3 chr1 236019532 236019863 + 1.83333 NA intron (NM_002508, intron 9 of 19) intron (NM_002508, intron 9 of 19) 45393 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 761-2 chr7 134606146 134606986 + 1.83333 NA Intergenic Intergenic -40213 NM_001293085 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 457.5-5 chr5 109468892 109469364 + 1.83333 NA Intergenic Intergenic -59154 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 274.666-6 chr20 22876195 22876388 + 1.83333 NA Intergenic L1MC3|LINE|L1 -159129 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 200.167-21 chr5 115323778 115323999 + 1.83333 NA Intergenic Intergenic -27234 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 275.833-13 chr2 71137126 71137331 + 1.83333 NA intron (NM_005791, intron 4 of 10) L1M5|LINE|L1 6594 NM_005791 10199 Hs.656208 NM_005791 ENSG00000124383 MPHOSPH10 CT90|MPP10|MPP10P|PPP1R106 M-phase phosphoprotein 10 protein-coding 228.5-8 chr15 80776596 80776883 + 1.83333 NA Intergenic Intergenic -2631 NM_018689 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 407.333-2 chr17 39862522 39862886 + 1.83333 NA intron (NM_012481, intron 1 of 7) intron (NM_012481, intron 1 of 7) 1484 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 372.666-4 chr15 40857754 40858107 + 1.83333 NA 3' UTR (NM_003710, exon 11 of 11) 3' UTR (NM_003710, exon 11 of 11) -13406 NR_146468 102724362 Hs.569458 NR_146466 ENSG00000261183 SPINT1-AS1 - SPINT1 antisense RNA 1 ncRNA 371.166-5 chr8 106247768 106248039 + 1.83333 NA Intergenic L1MA4|LINE|L1 -22275 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 317.833-10 chr5 7410289 7410585 + 1.83333 NA intron (NM_020546, intron 1 of 24) intron (NM_020546, intron 1 of 24) 14299 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 439.333 chr2 176330091 176330494 + 1.83333 NA intron (NM_001319098, intron 8 of 8) intron (NM_001319098, intron 8 of 8) 60850 NM_001006635 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 198.833-16 chr2 5248969 5249175 + 1.83333 NA Intergenic L1ME3B|LINE|L1 442046 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 164.167-56 chr9 84182319 84182483 + 1.83333 NA Intergenic Intergenic 118958 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 270.166 chr10 123154062 123154362 + 1.83333 NA promoter-TSS (NM_001007793) promoter-TSS (NM_001007793) -32 NM_001007793 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 175.333-56 chrX 64246507 64246636 + 1.83333 NA Intergenic L1PA13|LINE|L1 -15964 NM_130388 142689 Hs.56281 NM_130388 ENSG00000198881 ASB12 - ankyrin repeat and SOCS box containing 12 protein-coding 572.832 chr6 145704085 145704492 + 1.83333 NA intron (NM_001360064, intron 1 of 3) intron (NM_001360064, intron 1 of 3) -17411 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 467.834-4 chr6 167045844 167046312 + 1.83333 NA 3' UTR (NM_194429, exon 12 of 12) 3' UTR (NM_194429, exon 12 of 12) 46681 NM_194429 11116 Hs.487175 NM_007045 ENSG00000213066 FGFR1OP FOP FGFR1 oncogene partner protein-coding 214.666-2 chr10 22217516 22217742 + 1.83333 NA Intergenic Intergenic -7646 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 198.333-18 chr14 40659085 40659268 + 1.83333 NA Intergenic MLT1G1|LTR|ERVL-MaLR -295535 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 324.833-8 chr5 10439904 10440292 + 1.83333 NA TTS (NR_102746) TTS (NR_102746) 1753 NR_102746 100505845 Hs.599395 NR_102746 ROPN1L-AS1 - ROPN1L antisense RNA 1 ncRNA 357.166-4 chr5 41269250 41269584 + 1.83333 NA Intergenic Intergenic -7948 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 431.5-4 chr15 41289725 41290076 + 1.83333 NA intron (NR_152821, intron 2 of 4) L1ME4b|LINE|L1 4558 NR_152821 729082 Hs.380164 NR_026757 ENSG00000247556 OIP5-AS1 cyrano|linc-OIP5 OIP5 antisense RNA 1 ncRNA 386.667-2 chr10 130072271 130072522 + 1.83333 NA intron (NR_149170, intron 3 of 4) L1MEd|LINE|L1 -33613 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 197.333-29 chr5 27967270 27967412 + 1.83333 NA Intergenic L1MB8|LINE|L1 320324 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 392.999 chr1 234579660 234580086 + 1.83333 NA Intergenic AluJr|SINE|Alu 29652 NM_001077397 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 CVID14 interferon regulatory factor 2 binding protein 2 protein-coding 354.333-7 chr2 233916969 233917280 + 1.83333 NA promoter-TSS (NM_024080) promoter-TSS (NM_024080) -249 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 439-5 chrX 44026339 44026722 + 1.83333 NA Intergenic (CAT)n|Simple_repeat|Simple_repeat -53140 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 303.5-5 chr2 68717432 68717683 + 1.83333 NA Intergenic Intergenic -17254 NM_001364820 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 413.333 chr10 23400036 23400365 + 1.83333 NA Intergenic Intergenic -39069 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 251.5-10 chr15 83645784 83645989 + 1.83333 NA Intergenic MLT1J2|LTR|ERVL-MaLR -8237 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 248.334-4 chr18 73477602 73477887 + 1.83333 NA Intergenic Intergenic 152803 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 204.834-2 chr13 25037009 25037729 + 1.83333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -58769 NM_030979 5042 Hs.458280 NM_030979 ENSG00000151846 PABPC3 PABP3|PABPL3|tPABP poly(A) binding protein cytoplasmic 3 protein-coding 519.667-2 chr10 128210129 128210651 + 1.83333 NA Intergenic CpG -75560 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 499.333 chr17 43761118 43761697 + 1.83333 NA Intergenic AluJb|SINE|Alu -2616 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 309-6 chr1 206809417 206809642 + 1.83333 NA intron (NM_153758, intron 2 of 6) MIRc|SINE|MIR -19348 NM_013371 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 328.833 chr11 31103791 31104033 + 1.83333 NA intron (NM_001367979, intron 13 of 38) intron (NM_001367979, intron 13 of 38) -111226 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 250.166 chr13 38496685 38496865 + 1.83333 NA Intergenic Intergenic -70949 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 384.666-5 chr3 2720590 2720837 + 1.83333 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -171502 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 211.5-27 chr2 73459083 73459268 + 1.83333 NA non-coding (NR_046762, exon 2 of 2) non-coding (NR_046762, exon 2 of 2) 2072 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 327.833-3 chr2 142980389 142980576 + 1.83333 NA intron (NM_001199241, intron 9 of 14) MER41B|LTR|ERV1 102818 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 417.666-2 chr17 58814268 58814691 + 1.83333 NA intron (NM_014906, intron 1 of 6) MIRc|SINE|MIR 58610 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 211-14 chr14 49592012 49592248 + 1.83333 NA intron (NM_001351375, intron 1 of 2) intron (NM_001351375, intron 1 of 2) 5550 NR_002715 6029 NR_002715 ENSG00000276168 RN7SL1 7L1a|7SL|RN7SL|RNSRP1 RNA component of signal recognition particle 7SL1 scRNA 634.166 chr6 100460576 100461391 + 1.83333 NA intron (NM_005068, intron 1 of 10) intron (NM_005068, intron 1 of 10) 2692 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 391.167-11 chr7 104267721 104268198 + 1.83333 NA Intergenic Intergenic -59912 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 368.5-13 chr6 41544374 41544730 + 1.83333 NA intron (NR_126415, intron 1 of 1) intron (NR_126415, intron 1 of 1) 1691 NR_126417 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 668.001-3 chr15 94525848 94526828 + 1.83333 NA Intergenic Intergenic 170408 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 390.166 chr9 81143455 81143759 + 1.83333 NA Intergenic Intergenic 545928 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 295.666-2 chr10 87969906 87970161 + 1.83333 NA 3' UTR (NM_001304718, exon 9 of 9) 3' UTR (NM_001304718, exon 9 of 9) 106408 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 294-8 chr18 6039874 6040095 + 1.83333 NA intron (NM_001365767, intron 16 of 16) intron (NM_001365767, intron 16 of 16) -144030 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 290.5-25 chr7 113650117 113650418 + 1.83333 NA Intergenic MER31A|LTR|ERV1 268742 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 278.5-9 chr14 29123715 29123933 + 1.83333 NA Intergenic Intergenic -338037 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 517.333-2 chr20 4524233 4524747 + 1.83333 NA Intergenic Intergenic -161966 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 541.666 chr17 65750963 65751496 + 1.83333 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 75222 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 309.999-2 chr11 99005752 99005994 + 1.83333 NA Intergenic LTR103b_Mam|LTR|ERV1? -15076 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 190.5-36 chr4 176053836 176054037 + 1.83333 NA Intergenic Intergenic -11905 NM_001350727 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 389-10 chr21 31250775 31251207 + 1.83333 NA intron (NM_001353686, intron 5 of 27) MARNA|DNA|TcMar-Mariner -90051 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 244.333-27 chr5 98306878 98307046 + 1.83333 NA Intergenic L1MB1|LINE|L1 -145723 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 325.167-13 chr8 49123035 49123432 + 1.83333 NA Intergenic Intergenic 50889 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 356-4 chr1 162039618 162039836 + 1.83333 NA Intergenic MLT1D|LTR|ERVL-MaLR -15262 NM_001347700 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 336.833-3 chr15 61837537 61837735 + 1.83333 NA Intergenic Intergenic 107718 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 429.499-2 chrX 53830946 53831392 + 1.83333 NA Intergenic L1MA5|LINE|L1 -144450 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 293.333-12 chr2 61098448 61098633 + 1.83333 NA intron (NM_001129993, intron 12 of 21) L1ME3G|LINE|L1 32331 NM_032506 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 188.5-37 chr5 155988138 155988286 + 1.83333 NA Intergenic MLT1L|LTR|ERVL-MaLR -338545 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 430.833 chr12 12791523 12791848 + 1.83333 NA TTS (NM_001130415) TTS (NM_001130415) 6026 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 212.833-12 chr2 75729863 75730075 + 1.83333 NA Intergenic Intergenic -19054 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 324.999-2 chr4 81075592 81075782 + 1.83333 NA Intergenic Intergenic 44979 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 956.832 chr5 132007544 132008465 + 1.83333 NA intron (NM_001205250, intron 1 of 20) intron (NM_001205250, intron 1 of 20) 3654 NM_015256 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 241.5-9 chr2 72690499 72690692 + 1.83333 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 135438 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 328.334 chr11 68206272 68206551 + 1.83333 NA intron (NR_161380, intron 1 of 10) intron (NR_161380, intron 1 of 10) 6885 NM_001369424 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 271.334-14 chr6 121071412 121071607 + 1.83333 NA Intergenic L1M1|LINE|L1 262971 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 309.667-19 chr5 100585905 100586195 + 1.83333 NA intron (NM_198507, intron 2 of 2) intron (NM_198507, intron 2 of 2) 50676 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 272.834-9 chr6 152618195 152618508 + 1.83333 NA intron (NM_182961, intron 3 of 145) (AAC)n|Simple_repeat|Simple_repeat 18500 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 793.666 chr1 156456322 156457384 + 1.83333 NA Intergenic CpG -27305 NR_135263 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 422.833-6 chr5 119021712 119022085 + 1.83333 NA intron (NR_134250, intron 1 of 2) intron (NR_134250, intron 1 of 2) 15763 NR_134249 105379143 Hs.636285 NR_134249 ENSG00000249494 LOC105379143 - uncharacterized LOC105379143 ncRNA 531.833-2 chr2 101883083 101883973 + 1.83333 NA intron (NM_145686, intron 26 of 30) intron (NM_145686, intron 26 of 30) -99937 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 284-20 chr2 235098742 235099003 + 1.83333 NA Intergenic Intergenic 71137 NM_001371306 473.333-5 chr2 39513450 39513890 + 1.83333 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 76254 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 312.5-18 chr5 117757056 117757470 + 1.83333 NA intron (NR_104997, intron 1 of 2) MIRb|SINE|MIR 26902 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 409.166 chr10 17775874 17776155 + 1.83333 NA intron (NM_001098844, intron 2 of 3) intron (NM_001098844, intron 2 of 3) 23813 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 313.5-11 chr19 19360965 19361468 + 1.83333 NA Intergenic L1MB5|LINE|L1 -24587 NM_001300946 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 378.166-2 chr10 66300866 66301255 + 1.83333 NA intron (NM_001127384, intron 12 of 17) L1MEd|LINE|L1 -624976 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 361.167-3 chr12 122031573 122032054 + 1.83333 NA intron (NM_001024808, intron 2 of 5) intron (NM_001024808, intron 2 of 5) 9929 NM_001024808 605 Hs.530970 NM_020993 ENSG00000110987 BCL7A BCL7 BAF chromatin remodeling complex subunit BCL7A protein-coding 236.167-7 chr19 57477674 57477930 + 1.83333 NA promoter-TSS (NM_001330613) promoter-TSS (NM_001330613) -236 NM_001024596 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 415.834-2 chr15 80540517 80540931 + 1.83333 NA intron (NM_014862, intron 8 of 18) L1PA16|LINE|L1 22220 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 234-17 chr16 79463818 79464011 + 1.83333 NA Intergenic Intergenic 136823 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 289.333-5 chr10 14902241 14902527 + 1.83333 NA intron (NM_001193427, intron 5 of 5) intron (NM_001193427, intron 5 of 5) 23484 NM_024670 79723 Hs.554883 NM_024670 ENSG00000152455 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 protein-coding 240.333-16 chr4 47624501 47624762 + 1.83333 NA intron (NM_006587, intron 17 of 21) L3|LINE|CR1 -28038 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 239.5-17 chr19 8525691 8526010 + 1.83333 NA intron (NM_012335, intron 24 of 27) intron (NM_012335, intron 24 of 27) -11683 NM_001146175 84330 Hs.515114 NM_032370 ENSG00000133250 ZNF414 ZFP414 zinc finger protein 414 protein-coding 316.166 chr14 75204258 75204466 + 1.83333 NA Intergenic Intergenic -27750 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 310.166-7 chr8 141038310 141038679 + 1.83333 NA Intergenic Intergenic -36415 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 278.167-9 chr16 12819138 12819779 + 1.83333 NA Intergenic Intergenic -15571 NM_001099455 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 370.833-5 chr4 1748624 1748862 + 1.83333 NA Intergenic Intergenic 27222 NM_006342 10460 Hs.104019 NM_006342 ENSG00000013810 TACC3 ERIC-1|ERIC1 transforming acidic coiled-coil containing protein 3 protein-coding 359.499 chr10 17737323 17737526 + 1.83333 NA Intergenic Intergenic -14777 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 301.834-13 chr8 143383727 143383980 + 1.83333 NA 3' UTR (NM_052924, exon 15 of 15) 3' UTR (NM_052924, exon 15 of 15) 14977 NM_052924 114822 Hs.521912 NM_052924 ENSG00000158106 RHPN1 ODF5|RHOPHILIN|RHPN rhophilin Rho GTPase binding protein 1 protein-coding 371.166-6 chr9 16447277 16447494 + 1.83333 NA intron (NM_001317939, intron 4 of 6) intron (NM_001317939, intron 4 of 6) -171072 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 313.833-9 chr9 36102582 36103121 + 1.83333 NA intron (NM_021111, intron 12 of 20) AluYm1|SINE|Alu -33685 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 387.334-2 chr4 16796635 16796926 + 1.83333 NA intron (NM_001304435, intron 1 of 7) L1MC3|LINE|L1 101865 NM_001130834 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 317.499 chr18 64409745 64409962 + 1.83333 NA intron (NR_033881, intron 6 of 9) intron (NR_033881, intron 6 of 9) -149798 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 378-5 chr11 23443859 23444524 + 1.83333 NA Intergenic Intergenic -25001 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 392-7 chr5 19804672 19805072 + 1.83333 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 81400 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 323.5-10 chr17 75087419 75087704 + 1.83333 NA promoter-TSS (NM_001369668) promoter-TSS (NM_001369668) -204 NM_001271765 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 389-5 chr15 35519428 35519702 + 1.83333 NA 3' UTR (NM_001141972, exon 4 of 4) 3' UTR (NM_001141972, exon 4 of 4) 26600 NM_001141972 89978 Hs.107196 NM_080650 ENSG00000134146 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 297.999-2 chr6 68778875 68779042 + 1.83333 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 143676 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 301.166 chr11 4852174 4852395 + 1.83333 NA Intergenic L1M4a2|LINE|L1 -3076 NM_001004758 119692 Hs.553561 NM_001004758 ENSG00000176922 OR51S1 OR11-24 olfactory receptor family 51 subfamily S member 1 protein-coding 272.5-4 chr11 11022946 11023184 + 1.83333 NA Intergenic L2c|LINE|L2 164848 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 254-12 chr15 77743466 77743675 + 1.83333 NA intron (NM_001301186, intron 2 of 5) intron (NM_001301186, intron 2 of 5) -22819 NM_001301197 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 362.333-3 chr1 205919125 205919386 + 1.83333 NA intron (NM_052934, intron 18 of 20) intron (NM_052934, intron 18 of 20) -15658 NR_110984 103021296 Hs.613648 NR_110983 SLC26A9-AS1 - SLC26A9 and RAB7B antisense RNA 1 ncRNA 452.166-5 chr8 99531609 99532113 + 1.83333 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) 4869 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 385.333-3 chr2 125270655 125271113 + 1.83333 NA Intergenic Intergenic 847101 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 355-16 chrX 23902050 23902587 + 1.83333 NA intron (NM_024122, intron 1 of 8) intron (NM_024122, intron 1 of 8) 5620 NR_026545 79135 Hs.495851 NM_024122 ENSG00000184831 APOO FAM121B|MIC26|MICOS26|Mic23|My025 apolipoprotein O protein-coding 568.333 chr11 107037409 107038129 + 1.83333 NA Intergenic Intergenic -19293 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 361.334-3 chr3 26622477 26622856 + 1.83333 NA promoter-TSS (NM_052953) promoter-TSS (NM_052953) -140 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 487.833-5 chrX 112731937 112732543 + 1.83333 NA Intergenic Intergenic 48548 NR_036255 100423009 NR_036255 ENSG00000283775 MIR4329 - microRNA 4329 ncRNA 372.166-2 chr10 17702094 17702455 + 1.83333 NA intron (NM_001324284, intron 10 of 14) Charlie2b|DNA|hAT-Charlie -49927 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 186.166-3 chr15 40520454 40520584 + 1.83333 NA Intergenic Intergenic 12031 NR_002208 359821 Hs.678598 NR_002208 MRPL42P5 - mitochondrial ribosomal protein L42 pseudogene 5 pseudo 349.834-2 chr7 121676143 121676484 + 1.83333 NA Intergenic Intergenic -196848 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 468.833 chr13 96967276 96967715 + 1.83333 NA intron (NR_051966, intron 1 of 2) intron (NR_051966, intron 1 of 2) 16677 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 372.833-4 chr14 80937262 80937612 + 1.83333 NA intron (NM_152446, intron 2 of 24) intron (NM_152446, intron 2 of 24) 4301 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 243.333-25 chr2 152060496 152060883 + 1.83333 NA intron (NM_000726, intron 2 of 13) L1ME4a|LINE|L1 38074 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 283.333-16 chr5 41981100 41981354 + 1.83333 NA Intergenic MER46C|DNA|TcMar-Tigger 55946 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 214.166 chr11 8572132 8572286 + 1.83333 NA intron (NM_001289058, intron 1 of 13) L1MEc|LINE|L1 21767 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 173-35 chr5 181208370 181208534 + 1.83333 NA Intergenic L1MB3|LINE|L1 -3256 NM_033342 81786 Hs.487412 NM_033342 ENSG00000146054 TRIM7 GNIP|RNF90 tripartite motif containing 7 protein-coding 340.5-5 chr3 109050519 109050737 + 1.83333 NA intron (NM_014429, intron 14 of 27) L2b|LINE|L2 -50828 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 350-23 chrX 130165672 130166191 + 1.83333 NA promoter-TSS (NM_004208) promoter-TSS (NM_004208) -44 NM_145812 9131 Hs.424932 NM_004208 ENSG00000156709 AIFM1 AIF|CMT2D|CMTX4|COWCK|COXPD6|DFNX5|NADMR|NAMSD|PDCD8 apoptosis inducing factor mitochondria associated 1 protein-coding 387-23 chr8 129752973 129753230 + 1.83333 NA intron (NM_031415, intron 6 of 13) L1MA2|LINE|L1 33523 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 349.166-3 chr3 53980179 53980438 + 1.83333 NA Intergenic Intergenic -88449 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 283.833-15 chr8 97607783 97608145 + 1.83333 NA Intergenic AluJb|SINE|Alu -36220 NM_001363137 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 190.167-19 chr5 167536485 167536676 + 1.83333 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -37079 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 749.666 chr8 22287168 22287878 + 1.83333 NA intron (NM_001330480, intron 6 of 21) intron (NM_001330480, intron 6 of 21) 11956 NM_001135721 55124 Hs.614809 NM_018068 ENSG00000197181 PIWIL2 CT80|HILI|PIWIL1L|mili piwi like RNA-mediated gene silencing 2 protein-coding 469.666 chr9 35882062 35882473 + 1.83333 NA Intergenic L1ME3G|LINE|L1 -11866 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 498-5 chr18 6749132 6749540 + 1.83333 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -19474 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 292.5-12 chr2 37985185 37985569 + 1.83333 NA intron (NM_001170793, intron 4 of 9) L3|LINE|CR1 34913 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 487.333-4 chr20 37081649 37082131 + 1.83333 NA intron (NM_002895, intron 2 of 21) ERV24B_Prim-int|LTR|ERV1 14107 NM_002895 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 455.166-2 chr7 128883560 128883849 + 1.83333 NA intron (NM_001366122, intron 29 of 39) intron (NM_001366122, intron 29 of 39) 17374 NM_001195150 100130705 Hs.641532 NM_001195150 ENSG00000272899 ATP6V1FNB - ATP6V1F neighbor protein-coding 393.166-3 chr14 27455556 27455909 + 1.83333 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -156856 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 219.333-4 chr1 179586887 179587377 + 1.83333 NA Intergenic Intergenic -4481 NM_001199091 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 307.5-8 chr12 25501471 25501825 + 1.83333 NA intron (NM_001145729, intron 8 of 8) MIRc|SINE|MIR 51635 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 394.667-5 chr20 44388424 44388889 + 1.83333 NA intron (NR_109949, intron 2 of 3) intron (NR_109949, intron 2 of 3) 7050 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 338.333-9 chr5 61288932 61289341 + 1.83333 NA Intergenic Intergenic -24207 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 504.333-2 chr13 104773316 104773880 + 1.83333 NA Intergenic L1ME3|LINE|L1 -692269 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 243.334-7 chr3 64220263 64220450 + 1.83333 NA intron (NM_001370528, intron 1 of 7) intron (NM_001370528, intron 1 of 7) 5110 NM_198859 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 178-16 chr18 55830916 55831112 + 1.83333 NA Intergenic Intergenic -49289 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 444.334-2 chr2 193482124 193482457 + 1.83333 NA Intergenic Intergenic 732445 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 576-2 chr3 73508289 73508791 + 1.83333 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -12782 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 340.834-2 chr11 80839669 80840158 + 1.83333 NA Intergenic Tigger8|DNA|TcMar-Tigger -77110 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 362.167-8 chr17 74957883 74958165 + 1.83333 NA intron (NM_030630, intron 12 of 18) intron (NM_030630, intron 12 of 18) -12665 NR_110878 102723641 NR_110878 ENSG00000263586 HID1-AS1 - HID1 antisense RNA 1 ncRNA 275.5-3 chr1 88358705 88359055 + 1.83333 NA Intergenic HAL1ME|LINE|L1 -325264 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 469-3 chr14 61844036 61844551 + 1.83333 NA intron (NM_001367656, intron 1 of 7) L1MA2|LINE|L1 31590 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 280.166-3 chr17 71069698 71069965 + 1.83333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 132348 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 308.833-9 chr17 9627956 9628186 + 1.83333 NA intron (NM_001080556, intron 7 of 12) intron (NM_001080556, intron 7 of 12) -17446 NM_153210 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 469.499 chr2 51612441 51612824 + 1.83333 NA intron (NR_135237, intron 5 of 10) HERVL-int|LTR|ERVL 580031 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 503-7 chrX 110146679 110147179 + 1.83333 NA intron (NM_001353850, intron 5 of 7) intron (NM_001353850, intron 5 of 7) 64811 NR_039774 100616491 NR_039774 ENSG00000265584 MIR3978 - microRNA 3978 ncRNA 384.166 chr13 103962991 103963313 + 1.83333 NA Intergenic MER45A|DNA|hAT-Tip100 537952 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 497-4 chr3 32664762 32665236 + 1.83333 NA Intergenic Intergenic -20189 NM_001256741 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 293-23 chr8 24176888 24177307 + 1.83333 NA Intergenic Intergenic -116943 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 347.833-6 chr6 38751425 38751764 + 1.83333 NA intron (NM_001371, intron 8 of 91) MIRc|SINE|MIR 36283 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 203.166-5 chr7 50610788 50610921 + 1.83333 NA intron (NM_001350816, intron 12 of 17) intron (NM_001350816, intron 12 of 17) -45449 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 480.833-3 chr12 44134523 44134987 + 1.83333 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 298674 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 510.667-2 chr1 112358392 112359219 + 1.83333 NA Intergenic Intergenic -37409 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 368.5-2 chr1 89705614 89705981 + 1.83333 NA intron (NM_032270, intron 2 of 2) intron (NM_032270, intron 2 of 2) 72677 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 269.833-8 chr4 73921264 73921430 + 1.83333 NA Intergenic MIR|SINE|MIR 51954 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 306.667-8 chr17 61669608 61669815 + 1.83333 NA Intergenic MIRc|SINE|MIR -78492 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 378.333-7 chr17 60285018 60285347 + 1.83333 NA intron (NM_032582, intron 5 of 33) intron (NM_032582, intron 5 of 33) -53537 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 454.666 chr17 52436414 52436685 + 1.83333 NA intron (NR_146898, intron 1 of 3) hAT-N1_Mam|DNA|hAT-Tip100? 46027 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 399.166-2 chr3 190467779 190468205 + 1.83333 NA Intergenic Intergenic -18116 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 374.5-3 chr2 106525169 106525380 + 1.83333 NA intron (NM_001368307, intron 5 of 5) intron (NM_001368307, intron 5 of 5) 37910 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 215.167-24 chr4 73714316 73714786 + 1.83333 NA Intergenic L2c|LINE|L2 -26018 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 357.833 chr1 235843574 235843937 + 1.83333 NA intron (NR_102436, intron 1 of 3) intron (NR_102436, intron 1 of 3) 9305 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 421.167-5 chr20 62923174 62923674 + 1.83333 NA intron (NM_022105, intron 1 of 5) AluSz|SINE|Alu 3081 NM_001193370 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 323.666-8 chr5 156467281 156467576 + 1.83333 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 140264 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 389.667 chr1 165129318 165129677 + 1.83333 NA Intergenic L1MB3|LINE|L1 226744 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 288.334 chr1 198909847 198910068 + 1.83333 NA intron (NR_040073, intron 1 of 2) intron (NR_040073, intron 1 of 2) 27472 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 1146.17-3 chr17 75978699 75979810 + 1.83333 NA promoter-TSS (NM_007292) promoter-TSS (NM_007292) 14 NM_001113324 100134934 Hs.593566 NM_001113324 ENSG00000257949 TEN1 C17orf106 TEN1 subunit of CST complex protein-coding 613.667 chr3 129829512 129830021 + 1.83333 NA intron (NM_001349263, intron 4 of 7) intron (NM_001349263, intron 4 of 7) -35154 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 394.666-5 chr8 26089245 26089545 + 1.83333 NA Intergenic Intergenic -43982 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 372.667-7 chr2 108173289 108173642 + 1.83333 NA intron (NR_131251, intron 3 of 4) intron (NR_131251, intron 3 of 4) 44376 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 211.5-35 chr4 57436506 57436712 + 1.83333 NA intron (NR_125907, intron 4 of 5) intron (NR_125907, intron 4 of 5) 10737 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 238-15 chr16 61792254 61792425 + 1.83333 NA intron (NM_001796, intron 7 of 11) intron (NM_001796, intron 7 of 11) 244099 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 452.167 chr10 14722529 14722943 + 1.83333 NA intron (NM_031453, intron 1 of 4) L1MB7|LINE|L1 52161 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 746.666 chr1 248242638 248243320 + 1.83333 NA Intergenic Charlie5|DNA|hAT-Charlie 4050 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 312.5-14 chr3 144958517 144958808 + 1.83333 NA Intergenic Intergenic 985581 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 364.667 chr1 4529999 4530206 + 1.83333 NA Intergenic Intergenic -41385 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 370-2 chr12 130047085 130047774 + 1.83333 NA Intergenic AluY|SINE|Alu -5087 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 435.833-4 chr17 30469289 30469651 + 1.83333 NA 3' UTR (NM_001199775, exon 21 of 21) 3' UTR (NM_001199775, exon 21 of 21) -7938 NM_004871 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 627.834 chr1 83986093 83986601 + 1.83333 NA intron (NM_001350214, intron 1 of 21) L1MB2|LINE|L1 12785 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 301.666-5 chr11 12087368 12087734 + 1.83333 NA Intergenic Intergenic -23025 NM_001282668 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 730.833 chr5 54217420 54218316 + 1.83333 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 92705 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 287-12 chr17 68614126 68614362 + 1.83333 NA Intergenic LTR41C|LTR|ERVL -12877 NM_017565 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 614.333 chr2 237475364 237476199 + 1.83333 NA Intergenic Intergenic -10629 NM_001281474 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 536.5 chr16 17556788 17557192 + 1.83333 NA Intergenic Intergenic -86030 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 274-14 chr18 43444817 43445059 + 1.83333 NA Intergenic Intergenic -167448 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 386.167-2 chr1 180478137 180478409 + 1.83333 NA intron (NM_032360, intron 3 of 7) intron (NM_032360, intron 3 of 7) 24304 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 219.5-8 chr11 113236886 113237043 + 1.83333 NA intron (NM_001076682, intron 14 of 18) intron (NM_001076682, intron 14 of 18) 36937 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 254.333-6 chr11 133676869 133677067 + 1.83333 NA Intergenic Tigger14a|DNA|TcMar-Tigger 133408 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 450.666-3 chr17 30165886 30166421 + 1.83333 NA intron (NM_032141, intron 2 of 6) MIR|SINE|MIR -48993 NR_036149 100423003 NR_036149 ENSG00000284399 MIR3184 - microRNA 3184 ncRNA 433.499 chr3 22436541 22436942 + 1.83333 NA Intergenic Intergenic 479602 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 259.833-4 chr12 6613005 6613372 + 1.83333 NA Intergenic Intergenic -5809 NM_001363606 1108 Hs.162233 NM_001273 ENSG00000111642 CHD4 CHD-4|Mi-2b|Mi2-BETA|SIHIWES chromodomain helicase DNA binding protein 4 protein-coding 266.833-19 chr4 88361437 88361665 + 1.83333 NA Intergenic LTR12D|LTR|ERV1 -17188 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 594.334-3 chrX 111445504 111445960 + 1.83333 NA Intergenic Intergenic -33540 NM_001369372 1641 Hs.34780 NM_000555 ENSG00000077279 DCX DBCN|DC|LISX|SCLH|XLIS doublecortin protein-coding 333-7 chr17 75274741 75274948 + 1.83333 NA TTS (NR_036520) TTS (NR_036520) 3545 NR_036520 100287042 Hs.514470 NR_036520 ENSG00000263843 LOC100287042 - uncharacterized LOC100287042 ncRNA 181.333-31 chr4 47565351 47565688 + 1.83333 NA intron (NM_020453, intron 15 of 22) MIRb|SINE|MIR 80244 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 360.666-4 chr4 92387617 92388078 + 1.83333 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 83448 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 297.834-8 chr8 61792004 61792323 + 1.83333 NA Intergenic Intergenic 77375 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 208-32 chr3 160294874 160295063 + 1.83333 NA intron (NM_001190242, intron 11 of 18) intron (NM_001190242, intron 11 of 18) 69332 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 231.833-15 chr4 116672829 116673064 + 1.83333 NA Intergenic Intergenic 373221 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 262.666-2 chr17 69471874 69472238 + 1.83333 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 13476 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 332.5-5 chr15 58951033 58951385 + 1.83333 NA Intergenic Intergenic -17530 NM_024755 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 270.833-14 chr5 3197424 3197693 + 1.83333 NA Intergenic Intergenic 19723 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 242.5-19 chr16 77468301 77468496 + 1.83333 NA Intergenic Intergenic -33364 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 346.333-10 chr8 3890859 3891116 + 1.83333 NA intron (NM_033225, intron 5 of 69) MIRb|SINE|MIR 1103927 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 443.334-8 chr8 84575480 84575988 + 1.83333 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -130193 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 233-3 chr1 246243108 246243344 + 1.83333 NA intron (NM_022743, intron 5 of 11) HAL1ME|LINE|L1 174186 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 273.166-2 chr14 66709414 66709669 + 1.83333 NA intron (NM_001024218, intron 2 of 21) MER44C|DNA|TcMar-Tigger 202134 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 245-28 chr4 91127305 91127538 + 1.83333 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 892390 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 243.166-2 chr10 103593281 103593510 + 1.83333 NA TTS (NM_004210) TTS (NM_004210) -75953 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 206.167-19 chr5 44272524 44272787 + 1.83333 NA Intergenic Intergenic -116077 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 388.5 chr1 84692474 84692830 + 1.83333 NA Intergenic Tigger1|DNA|TcMar-Tigger -2184 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 262-25 chr6 79942947 79943169 + 1.83333 NA intron (NM_022726, intron 1 of 5) intron (NM_022726, intron 1 of 5) 4495 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 339.667 chr1 76038536 76038879 + 1.83333 NA Intergenic MIRc|SINE|MIR 27383 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 572.001 chr9 72280846 72281334 + 1.83333 NA Intergenic Intergenic -24346 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 283.833-6 chr2 28099584 28099868 + 1.83333 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 103359 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 386.5-6 chr20 55668951 55669332 + 1.83333 NA Intergenic Intergenic -241944 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 386.167-5 chr5 150636066 150636600 + 1.83333 NA intron (NM_001166208, intron 2 of 2) MER113A|DNA|hAT-Charlie -4327 NM_001109974 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 298.5-19 chr6 122220624 122220975 + 1.83333 NA Intergenic Intergenic -178752 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 289.166-2 chr17 43693673 43693948 + 1.83333 NA Intergenic Helitron2Na_Mam|RC?|Helitron? -31888 NM_004527 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 299.834-7 chr2 145989815 145990103 + 1.83333 NA Intergenic Intergenic -597098 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 399.999 chr3 4976024 4976579 + 1.83333 NA intron (NR_125915, intron 1 of 3) MER91C|DNA|hAT-Tip100 -3136 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 311.667-2 chr12 68155736 68156070 + 1.83333 NA intron (NM_000619, intron 3 of 3) MIRc|SINE|MIR 3837 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 670.499 chr10 81042515 81043036 + 1.83333 NA Intergenic Kanga1b|DNA|TcMar-Tc2 392978 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 708.166-2 chr20 59495503 59496568 + 1.83333 NA Intergenic MLT1D|LTR|ERVL-MaLR -81474 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 212-32 chr3 9856836 9856979 + 1.83333 NA Intergenic Intergenic -12848 NM_001351738 285367 Hs.33719 NM_173659 ENSG00000156990 RPUSD3 - RNA pseudouridine synthase D3 protein-coding 247.167-3 chr1 241672020 241672229 + 1.83333 NA intron (NM_001367482, intron 3 of 27) AluSx|SINE|Alu 19843 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 389.167-2 chr18 54671526 54671858 + 1.83333 NA Intergenic Intergenic 80533 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 324.833-3 chr22 28421848 28422144 + 1.83333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -37873 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 290.166-4 chr2 126216318 126216607 + 1.83333 NA Intergenic Intergenic -98477 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 317.833-12 chr5 148444521 148444712 + 1.83333 NA Intergenic Intergenic 60658 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 331.833-4 chr2 168999506 168999749 + 1.83333 NA intron (NM_003742, intron 5 of 27) L1MD1|LINE|L1 31697 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 238.5-18 chr2 212796142 212796333 + 1.83333 NA non-coding (NR_131942, exon 2 of 2) non-coding (NR_131942, exon 2 of 2) 906 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 349.499 chr6 116907296 116907496 + 1.83333 NA intron (NM_173560, intron 6 of 18) L1MB3|LINE|L1 30154 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 538.167 chr12 28998678 28999513 + 1.83333 NA Intergenic Intergenic -150183 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 401.5-4 chr21 43645748 43646146 + 1.83333 NA intron (NM_007031, intron 3 of 8) intron (NM_007031, intron 3 of 8) 13541 NM_007031 11077 Hs.406157 NM_007031 ENSG00000160207 HSF2BP - heat shock transcription factor 2 binding protein protein-coding 350.834-5 chr5 140794567 140794810 + 1.83333 NA promoter-TSS (NM_018905) promoter-TSS (NM_018905) -164 NM_031495 56146 Hs.199343 NM_018905 ENSG00000204969 PCDHA2 PCDH-ALPHA2 protocadherin alpha 2 protein-coding 311.333-6 chr12 82516984 82517166 + 1.83333 NA Intergenic MIR|SINE|MIR -158270 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 208.5-28 chr20 59544506 59544632 + 1.83333 NA Intergenic L1M4b|LINE|L1 -32940 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 358.166-2 chr14 21092415 21092738 + 1.83333 NA exon (NM_016423, exon 3 of 5) exon (NM_016423, exon 3 of 5) 6079 NM_016423 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 334.334-7 chr17 61416800 61417011 + 1.83333 NA Intergenic CpG 5154 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 393.666-3 chr9 7273487 7273805 + 1.83333 NA Intergenic Intergenic 516296 NM_001304339 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 175-8 chr11 11847121 11847226 + 1.83333 NA intron (NM_017944, intron 1 of 26) intron (NM_017944, intron 1 of 26) 5750 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 379.166-4 chr7 19829642 19829931 + 1.83333 NA Intergenic MARNA|DNA|TcMar-Mariner -56169 NM_001366626 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 199-35 chr4 64581595 64581888 + 1.83333 NA Intergenic L2a|LINE|L2 -172281 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 415.833-3 chr16 19067464 19068334 + 1.83333 NA promoter-TSS (NR_119382) promoter-TSS (NR_119382) -8 NR_163449 10229 Hs.157113 NM_016138 ENSG00000167186 COQ7 CAT5|CLK-1|CLK1|COQ10D8 coenzyme Q7, hydroxylase protein-coding 271.334-2 chr10 4559647 4559838 + 1.83333 NA Intergenic L1MA9|LINE|L1 -96414 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 220.333-12 chr19 40017359 40017851 + 1.83333 NA 3' UTR (NM_001297763, exon 7 of 7) 3' UTR (NM_001297763, exon 7 of 7) 20545 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 369.833-6 chr6 61579183 61579455 + 1.83333 NA intron (NR_146870, intron 14 of 15) intron (NR_146870, intron 14 of 15) 5189 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 502.833-2 chr2 18179476 18180000 + 1.83333 NA Intergenic Intergenic 301071 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 340.166-2 chr18 66401859 66402282 + 1.83333 NA Intergenic Intergenic 202020 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 457.832 chr17 7844648 7844906 + 1.83333 NA intron (NM_001080424, intron 1 of 21) CpG 4860 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 303.166-3 chr2 161194814 161195261 + 1.83333 NA intron (NM_001199135, intron 2 of 7) intron (NM_001199135, intron 2 of 7) 34609 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 450.5-6 chr8 112761624 112762153 + 1.83333 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 118395 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 243.167-16 chr6 55242576 55242827 + 1.83333 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) -84768 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 209.666-2 chr10 86051179 86051366 + 1.83333 NA intron (NM_017551, intron 4 of 15) L1M5|LINE|L1 213516 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 188.667-54 chr9 38400442 38400939 + 1.83333 NA Intergenic Intergenic 7988 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 564.999 chr7 151367825 151368334 + 1.83333 NA intron (NM_001363529, intron 10 of 14) intron (NM_001363529, intron 10 of 14) 26267 NM_001363529 51667 Hs.647082 NM_016118 ENSG00000013374 NUB1 BS4|NUB1L|NYREN18 negative regulator of ubiquitin like proteins 1 protein-coding 215-14 chr16 30693891 30694149 + 1.83333 NA Intergenic Intergenic 4451 NM_001256932 730183 Hs.535456 NM_001256932 ENSG00000261840 LOC730183 - uncharacterized LOC730183 protein-coding 311.333-18 chr4 118819927 118820123 + 1.83333 NA intron (NM_014822, intron 3 of 22) intron (NM_014822, intron 3 of 22) 16101 NM_001318066 9871 Hs.189641 NM_014822 ENSG00000150961 SEC24D CLCRP2 SEC24 homolog D, COPII coat complex component protein-coding 544.666-2 chr15 44286869 44287542 + 1.83333 NA Intergenic Intergenic -1514 NR_157849 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility 4 protein-coding 511.499 chr6 131960082 131960550 + 1.83333 NA Intergenic Intergenic -8944 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 373.833-3 chr4 73274512 73274867 + 1.83333 NA Intergenic Intergenic -15891 NM_032217 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 437.5 chr1 22641827 22642443 + 1.83333 NA Intergenic Intergenic -1498 NM_001347619 714 Hs.467753 NM_172369 ENSG00000159189 C1QC C1Q-C|C1QG complement C1q C chain protein-coding 537 chr16 66954001 66954570 + 1.83333 NA Intergenic Intergenic -6981 NM_024922 23491 Hs.268700 NM_012122 ENSG00000172828 CES3 ES31 carboxylesterase 3 protein-coding 201.5-34 chr7 89082375 89082528 + 1.83333 NA intron (NM_181646, intron 1 of 3) (ATTTAA)n|Simple_repeat|Simple_repeat -286714 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 1076-2 chr5 120655476 120656738 + 1.83333 NA intron (NM_001308088, intron 3 of 3) intron (NM_001308088, intron 3 of 3) 124643 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 175.5-55 chr8 74965211 74965327 + 1.83333 NA Intergenic Intergenic -19236 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 596.501-2 chr8 10977147 10977776 + 1.83333 NA intron (NM_173683, intron 1 of 2) L3|LINE|CR1 57841 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 192.667-10 chr14 52842189 52842380 + 1.83333 NA Intergenic Intergenic -50677 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 222.666-7 chr3 77361782 77361967 + 1.83333 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 263862 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 196.166 chr2 40348831 40349033 + 1.83333 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 81372 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 365.5 chr1 59971347 59971577 + 1.83333 NA Intergenic Intergenic -44664 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 195-26 chr20 10555891 10556301 + 1.83333 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 93599 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 420.5-7 chr17 38923727 38924332 + 1.83333 NA Intergenic Intergenic -1139 NR_038847 100505576 Hs.634043 NR_038847 ENSG00000263874 LINC00672 - long intergenic non-protein coding RNA 672 ncRNA 486.5 chr1 30918985 30919684 + 1.83333 NA Intergenic LTR26|LTR|ERV1 -10576 NM_014654 9672 Hs.158287 NM_014654 ENSG00000162512 SDC3 SDCN|SYND3 syndecan 3 protein-coding 405.166 chr7 12324466 12324934 + 1.83333 NA Intergenic Intergenic 79165 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 390.499 chr11 29263434 29263679 + 1.83333 NA Intergenic Intergenic -330857 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 269.166-4 chr2 187451733 187451974 + 1.83333 NA Intergenic Intergenic -3601 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 321.833-2 chr10 87698480 87698887 + 1.83333 NA intron (NM_001015880, intron 1 of 12) intron (NM_001015880, intron 1 of 12) 38805 NM_004670 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 298-3 chr10 29467760 29467965 + 1.83333 NA non-coding (NR_110925, exon 3 of 3) non-coding (NR_110925, exon 3 of 3) 57619 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 308.166-6 chr21 25488395 25488583 + 1.83333 NA Intergenic L3|LINE|CR1 -56788 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 407.833-2 chr17 59001379 59002127 + 1.83333 NA non-coding (NR_148347, exon 22 of 23) non-coding (NR_148347, exon 22 of 23) 105127 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 449.833-4 chr8 6708612 6709156 + 1.83333 NA promoter-TSS (NR_125386) promoter-TSS (NR_125386) 242 NM_018361 55326 Hs.624002 NM_018361 ENSG00000155189 AGPAT5 1AGPAT5|LPAATE 1-acylglycerol-3-phosphate O-acyltransferase 5 protein-coding 203.333-61 chr8 99473435 99473694 + 1.83333 NA intron (NM_017890, intron 24 of 61) L1ME1|LINE|L1 63166 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 202.667-17 chr18 3322888 3323102 + 1.83333 NA Intergenic Helitron2Na_Mam|RC?|Helitron? 27564 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 334-12 chr5 171606081 171606420 + 1.83333 NA Intergenic L1MC4a|LINE|L1 -179622 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 413.5-2 chr20 35954186 35954707 + 1.83333 NA intron (NM_016558, intron 2 of 2) CpG 180 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 395.666-4 chr7 118813669 118814030 + 1.83333 NA Intergenic Intergenic 589145 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 199.666-2 chr1 161095902 161096078 + 1.83333 NA Intergenic Intergenic -2371 NM_001007255 126823 Hs.507290 NM_152366 ENSG00000162755 KLHDC9 KARCA1 kelch domain containing 9 protein-coding 241.833-5 chr2 27092858 27093097 + 1.83333 NA intron (NM_006488, intron 2 of 7) MIR1_Amn|SINE|MIR 6205 NM_000221 3795 Hs.567297 NM_000221 ENSG00000138030 KHK - ketohexokinase protein-coding 435.833-3 chr14 83874772 83875171 + 1.83333 NA Intergenic Intergenic 1232339 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 304.333-15 chr9 80810568 80810904 + 1.83333 NA Intergenic Intergenic 835713 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 321.333-11 chr3 112446172 112446486 + 1.83333 NA Intergenic Intergenic 53143 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 237.166-9 chr9 35658033 35658225 + 1.83333 NA promoter-TSS (NM_174923) promoter-TSS (NM_174923) -111 NR_003051 6023 Hs.587502 NR_003051 ENSG00000269900 RMRP CHH|NME1|RMRPR|RRP2 RNA component of mitochondrial RNA processing endoribonuclease ncRNA 475.667-6 chr5 127311246 127311767 + 1.83333 NA intron (NM_001308119, intron 2 of 14) intron (NM_001308119, intron 2 of 14) 20710 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 321.167-9 chr2 18117832 18118119 + 1.83333 NA Intergenic L1M1|LINE|L1 239308 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 475.166 chr2 186512187 186512890 + 1.83333 NA Intergenic Intergenic 26278 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 175.167-34 chr4 69460817 69461046 + 1.83333 NA Intergenic Intergenic 34974 NM_001297615 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 826.166-2 chr14 89915247 89916211 + 1.83333 NA intron (NM_001284269, intron 5 of 5) intron (NM_001284269, intron 5 of 5) 38807 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 253.833-10 chr3 191225001 191225292 + 1.83333 NA intron (NM_198184, intron 3 of 4) L1MC|LINE|L1 9459 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 333.5-8 chr15 82809279 82809663 + 1.83333 NA promoter-TSS (NM_001080435) promoter-TSS (NM_001080435) -157 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WASP homolog associated with actin, golgi membranes and microtubules protein-coding 336.833-6 chr3 50324379 50324964 + 1.83333 NA TTS (NM_007275) TTS (NM_007275) -1821 NM_033158 8692 Hs.76873 NM_003773 ENSG00000068001 HYAL2 LUCA2 hyaluronidase 2 protein-coding 491.833-2 chr2 186504580 186504913 + 1.83333 NA intron (NM_018471, intron 6 of 9) intron (NM_018471, intron 6 of 9) 18486 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 1089.83 chr1 155323144 155324452 + 1.83333 NA promoter-TSS (NM_014328) promoter-TSS (NM_014328) 47 NR_145425 284618 Hs.650801 NM_173639 ENSG00000225855 RUSC1-AS1 C1orf104 RUSC1 antisense RNA 1 ncRNA 350.5-10 chr7 6478759 6479070 + 1.83333 NA intron (NM_001100603, intron 1 of 3) AluSq2|SINE|Alu 5238 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 227-20 chr2 148581684 148581911 + 1.83333 NA Intergenic Intergenic -62954 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 371.833 chr10 35764678 35764881 + 1.83333 NA Intergenic L1PA16|LINE|L1 -13523 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 213-10 chr11 80378218 80378416 + 1.83333 NA Intergenic Intergenic 384486 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 291.667-3 chr12 20212901 20213145 + 1.83333 NA Intergenic Intergenic -85122 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 310.666-3 chr2 73763930 73764138 + 1.83333 NA intron (NM_003584, intron 8 of 8) intron (NM_003584, intron 8 of 8) 16123 NM_003584 8446 Hs.14611 NM_003584 ENSG00000144048 DUSP11 PIR1 dual specificity phosphatase 11 protein-coding 453.667-5 chr6 3251391 3252038 + 1.83333 NA Intergenic MIR3|SINE|MIR -7233 NM_001135750 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome assembly chaperone 4 protein-coding 266.833-23 chr8 102297176 102297599 + 1.83333 NA intron (NM_001282873, intron 27 of 58) intron (NM_001282873, intron 27 of 58) 57936 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 458.833-4 chr8 128184440 128185123 + 1.83333 NA Intergenic Intergenic 34665 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 331.833-3 chr2 43601700 43601955 + 1.83333 NA Intergenic AluSx1|SINE|Alu -5781 NM_022065 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 190.667-57 chr8 142707465 142707828 + 1.83333 NA intron (NR_038925, intron 2 of 2) intron (NR_038925, intron 2 of 2) 7535 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 801.167 chr6 47047100 47048099 + 1.83333 NA Intergenic Intergenic -5267 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 311.667 chr1 205738987 205739311 + 1.83333 NA intron (NM_022731, intron 1 of 6) MIRb|SINE|MIR 11033 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 364.667-15 chr4 39706492 39706942 + 1.83333 NA intron (NM_001111113, intron 1 of 4) AluSx3|SINE|Alu 8581 NM_001312648 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 698 chr18 76801975 76802433 + 1.83333 NA intron (NR_040024, intron 2 of 2) intron (NR_040024, intron 2 of 2) 20091 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 252.5-4 chr10 54371640 54371969 + 1.83333 NA intron (NM_001354411, intron 4 of 34) intron (NM_001354411, intron 4 of 34) -114426 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 274-45 chrX 49871220 49871455 + 1.83333 NA Intergenic L1MC5a|LINE|L1 8019 NR_026742 158572 Hs.408191 NM_001025449 ENSG00000234390 USP27X-AS1 - USP27X antisense RNA 1 (head to head) ncRNA 234.5-42 chr9 114753518 114753758 + 1.83333 NA Intergenic MLT1J1|LTR|ERVL-MaLR 38892 NM_001204344 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 422.166 chr14 66342764 66343074 + 1.83333 NA Intergenic Intergenic -143452 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 315.5-7 chr22 22776892 22777150 + 1.83333 NA Intergenic Intergenic -45755 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 274.333-18 chr2 189409530 189409738 + 1.83333 NA Intergenic Intergenic -31799 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 253.833 chr10 98379995 98380390 + 1.83333 NA Intergenic L1ME4a|LINE|L1 15115 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 441.999 chr5 83925000 83925421 + 1.83333 NA Intergenic MIR|SINE|MIR -204355 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 245.666 chr11 33557364 33557562 + 1.83333 NA intron (NM_012194, intron 6 of 20) intron (NM_012194, intron 6 of 20) 143277 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 372.666-6 chr20 49132799 49133120 + 1.83333 NA intron (NM_001319134, intron 5 of 12) intron (NM_001319134, intron 5 of 12) 55411 NM_017452 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 608 chr22 22207354 22208318 + 1.83333 NA Intergenic Intergenic -36950 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 679.666-2 chr6 41936277 41937122 + 1.83333 NA intron (NM_001136125, intron 2 of 3) intron (NM_001136125, intron 2 of 3) 5149 NM_001287427 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 431.499 chr11 34644822 34645152 + 1.83333 NA intron (NM_012153, intron 2 of 8) intron (NM_012153, intron 2 of 8) 12421 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 191-39 chr5 40283746 40283909 + 1.83333 NA Intergenic Intergenic 231536 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 487.501 chr12 67088162 67088629 + 1.83333 NA intron (NR_120490, intron 3 of 3) intron (NR_120490, intron 3 of 3) 7889 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 358.166 chr12 119154774 119155096 + 1.83333 NA intron (NM_194286, intron 12 of 12) MIRc|SINE|MIR 21549 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 330-11 chr18 31029119 31029321 + 1.83333 NA intron (NM_001941, intron 4 of 15) L2c|LINE|L2 13522 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 726.5 chr1 61852094 61852789 + 1.83333 NA intron (NM_001350145, intron 17 of 43) intron (NM_001350145, intron 17 of 43) 6366 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 198.166 chr12 14808312 14808494 + 1.83333 NA intron (NM_001013698, intron 1 of 1) intron (NM_001013698, intron 1 of 1) 4733 NM_175874 144608 Hs.659951 NM_175874 ENSG00000182993 C12orf60 - chromosome 12 open reading frame 60 protein-coding 281.5-10 chr18 64674703 64675027 + 1.83333 NA Intergenic Intergenic -414810 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 299.166-2 chr12 75267453 75267616 + 1.83333 NA Intergenic Intergenic 32794 NR_149000 100130268 Hs.524596 NR_149000 ENSG00000254451 LOC100130268 - uncharacterized LOC100130268 ncRNA 392-2 chr17 60135098 60135842 + 1.83333 NA Intergenic Intergenic -14503 NM_000717 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 243.5-26 chr5 17257808 17258373 + 1.83333 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 40459 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 361.166-3 chr3 197904090 197904298 + 1.83333 NA intron (NM_001323029, intron 9 of 11) L1MA3|LINE|L1 45731 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 294-10 chr2 168128737 168129053 + 1.83333 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) 118700 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 545.834 chr10 75027486 75028113 + 1.83333 NA intron (NM_001370144, intron 15 of 15) intron (NM_001370144, intron 15 of 15) 6066 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 241.667-2 chr1 110524420 110524668 + 1.83333 NA Intergenic Intergenic -5369 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 313.333-4 chr1 186430238 186430574 + 1.83333 NA Intergenic Intergenic -4755 NR_126002 102724919 Hs.576493 NR_126002 ENSG00000229739 LOC102724919 - uncharacterized LOC102724919 ncRNA 266.333-2 chr1 147577172 147577366 + 1.83333 NA intron (NM_004326, intron 1 of 9) intron (NM_004326, intron 1 of 9) 35768 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS BCL9 transcription coactivator protein-coding 327.833-7 chr3 111619405 111619749 + 1.83333 NA intron (NR_134917, intron 8 of 14) intron (NR_134917, intron 8 of 14) -24231 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 281-22 chr5 107894248 107894621 + 1.83333 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -223497 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 341.667-7 chr2 116687739 116688029 + 1.83333 NA Intergenic Intergenic -1126807 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 285.833-19 chr9 35474761 35474953 + 1.83333 NA intron (NR_003581, intron 14 of 17) L1ME4a|LINE|L1 -15254 NM_001330740 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 294.667-8 chr11 86864633 86864902 + 1.83333 NA intron (NR_120592, intron 2 of 2) MLT1D|LTR|ERVL-MaLR -6813 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 721.5 chr12 14769700 14770545 + 1.83333 NA TTS (NM_175054) TTS (NM_175054) 1009 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 578.167-2 chr12 23792947 23793321 + 1.83333 NA intron (NM_152989, intron 6 of 17) Tigger20a|DNA|TcMar-Tigger 156536 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 994.5-2 chr14 67583641 67584698 + 1.83333 NA intron (NM_020715, intron 26 of 28) intron (NM_020715, intron 26 of 28) 16099 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 503.833 chr1 204989092 204989736 + 1.83333 NA intron (NM_001365986, intron 22 of 24) intron (NM_001365986, intron 22 of 24) 45188 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 456.833-2 chr6 144216568 144217013 + 1.83333 NA Intergenic Intergenic 66273 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 224.833 chr1 199084613 199084868 + 1.83333 NA Intergenic Intergenic -63858 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 315-6 chr19 19192523 19192768 + 1.83333 NA promoter-TSS (NM_005919) promoter-TSS (NM_005919) -121 NM_001278728 8625 Hs.153629 NM_003721 ENSG00000064490 RFXANK ANKRA1|BLS|F14150_1|RFX-B regulatory factor X associated ankyrin containing protein protein-coding 219.333-43 chr8 117080520 117080687 + 1.83333 NA intron (NM_001172815, intron 2 of 10) L1PA16|LINE|L1 -54392 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 360.166-2 chr11 123640860 123641091 + 1.83333 NA intron (NM_001040151, intron 4 of 6) intron (NM_001040151, intron 4 of 6) 13632 NM_001040151 55800 Hs.4865 NM_018400 ENSG00000166257 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium voltage-gated channel beta subunit 3 protein-coding 213.167-28 chr7 35835244 35835386 + 1.83333 NA intron (NM_001363715, intron 3 of 13) intron (NM_001363715, intron 3 of 13) 34096 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 339-10 chr2 152181808 152182177 + 1.83333 NA Intergenic Intergenic -6229 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 470-4 chr7 43260044 43260616 + 1.83333 NA intron (NM_001287059, intron 2 of 27) L2b|LINE|L2 109435 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 411.5 chr1 218380839 218381114 + 1.83333 NA intron (NR_138149, intron 2 of 7) MIRb|SINE|MIR -35298 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 664.166-5 chr9 89598056 89598538 + 1.83333 NA Intergenic Intergenic -6715 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 299.5-12 chr2 157055877 157056189 + 1.83333 NA Intergenic Intergenic -201672 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 308.5-22 chr6 128731331 128731604 + 1.83333 NA Intergenic Intergenic -151671 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 602.5-3 chr20 57622215 57622917 + 1.83333 NA Intergenic Intergenic -2140 NR_136660 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 433.333-7 chr3 81223521 81223876 + 1.83333 NA Intergenic Intergenic 229830 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 696.333 chr10 12711030 12711543 + 1.83333 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) 14067 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 230.167-20 chr9 95166405 95166567 + 1.83333 NA intron (NM_001243744, intron 6 of 13) L1MB2|LINE|L1 -80392 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 682.999 chr18 66499893 66500358 + 1.83333 NA TTS (NM_021153) TTS (NM_021153) 103965 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 454.666-2 chr5 10344499 10344802 + 1.83333 NA Intergenic AluSz|SINE|Alu -9045 NM_005885 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 302.333-14 chr7 88501489 88501826 + 1.83333 NA Intergenic HAL1|LINE|L1 -194763 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 332.333-2 chr1 48462365 48462641 + 1.83333 NA intron (NM_019073, intron 1 of 12) L1MEi|LINE|L1 9701 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 489.5-5 chr9 28004970 28005599 + 1.83333 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -431418 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 273.333-16 chr6 40908386 40908681 + 1.83333 NA intron (NR_110873, intron 1 of 5) L1MEf|LINE|L1 114747 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 295.666-5 chr11 24509644 24509882 + 1.83333 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 12710 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 165.333-26 chr21 18919739 18919923 + 1.83333 NA Intergenic Intergenic -160019 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 404.666-6 chr2 226032684 226033121 + 1.83333 NA Intergenic Intergenic -109892 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 282.833-12 chr4 107171479 107171675 + 1.83333 NA Intergenic Intergenic -135264 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 246.5-31 chr7 107910217 107910363 + 1.83333 NA intron (NM_001289752, intron 7 of 12) L3|LINE|CR1 19107 NM_000108 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 198.333-37 chr5 130109865 130110008 + 1.83333 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 205471 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 292.5-9 chr18 69367800 69368181 + 1.83333 NA Intergenic Intergenic -32898 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 372.666-5 chr20 4595207 4595415 + 1.83333 NA Intergenic Intergenic -91145 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 334.666-5 chr18 63342327 63342599 + 1.83333 NA intron (NM_002035, intron 7 of 9) HAL1|LINE|L1 -23083 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 328.167-7 chr6 20838449 20838770 + 1.83333 NA intron (NM_017774, intron 8 of 15) intron (NM_017774, intron 8 of 15) 304152 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 341.167-7 chr18 29892011 29892334 + 1.83333 NA Intergenic Intergenic -406738 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 297.333-15 chr5 87715735 87715942 + 1.83333 NA Intergenic HUERS-P1-int|LTR|ERV1 53796 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 281.5-6 chr12 38735748 38736075 + 1.83333 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 169680 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 280.333-11 chr14 82583617 82583834 + 1.83333 NA Intergenic (ATG)n|Simple_repeat|Simple_repeat -58907 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 296.5-14 chr17 58149378 58149584 + 1.83333 NA Intergenic Intergenic -5673 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 276.333-9 chr3 193953476 193953695 + 1.83333 NA Intergenic L1MA5|LINE|L1 40653 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 328.5-6 chr21 26779877 26780152 + 1.83333 NA Intergenic Intergenic 65395 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 189-25 chr19 46662096 46662240 + 1.83333 NA promoter-TSS (NM_145056) promoter-TSS (NM_145056) 690 NR_040041 100506068 Hs.434327 NR_040041 ENSG00000245598 DACT3-AS1 - DACT3 antisense RNA 1 ncRNA 300.667-12 chr4 95157157 95157447 + 1.83333 NA 3' UTR (NM_001203, exon 13 of 13) 3' UTR (NM_001203, exon 13 of 13) 65811 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 342.333-10 chrX 4550164 4550442 + 1.83333 NA Intergenic LTR40c|LTR|ERVL 83269 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 227.833-7 chr12 74890127 74890376 + 1.83333 NA Intergenic Intergenic 319497 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 396.666-5 chr20 14053545 14054099 + 1.83333 NA intron (NM_001351663, intron 2 of 17) intron (NM_001351663, intron 2 of 17) 58306 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 199.333-25 chr19 10403543 10403654 + 1.83333 NA promoter-TSS (NR_031592) promoter-TSS (NR_031592) -56 NM_007065 11140 Hs.160958 NM_007065 ENSG00000105401 CDC37 P50CDC37 cell division cycle 37 protein-coding 248.334-10 chr3 14164285 14164499 + 1.83333 NA intron (NM_001354726, intron 6 of 14) intron (NM_001354726, intron 6 of 14) 14209 NR_148951 7508 Hs.475538 NM_004628 ENSG00000154767 XPC RAD4|XP3|XPCC|p125 XPC complex subunit, DNA damage recognition and repair factor protein-coding 224.167-8 chr15 87441288 87441446 + 1.83333 NA Intergenic Intergenic -135562 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 564.666 chr12 6470494 6471005 + 1.83333 NA promoter-TSS (NM_016830) promoter-TSS (NM_016830) -72 NM_001297438 6843 Hs.20021 NM_014231 ENSG00000139190 VAMP1 CMS25|SPAX1|SYB1|VAMP-1 vesicle associated membrane protein 1 protein-coding 519.333 chr2 118371265 118371838 + 1.83333 NA Intergenic Intergenic -185165 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 584.666 chr10 80924947 80925374 + 1.83333 NA Intergenic Intergenic 275363 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 398.833-2 chr14 53782366 53782650 + 1.83333 NA Intergenic AluSp|SINE|Alu 165976 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 394.5-10 chr6 133961060 133961413 + 1.83333 NA intron (NM_004865, intron 1 of 6) intron (NM_004865, intron 1 of 6) 8012 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 242-24 chr4 122930867 122931152 + 1.83333 NA intron (NM_001317799, intron 3 of 10) intron (NM_001317799, intron 3 of 10) 7931 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 429.5-7 chr6 66508235 66508897 + 1.83333 NA Intergenic Intergenic 720687 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 329.666-5 chr2 182190222 182190509 + 1.83333 NA intron (NM_005019, intron 10 of 14) intron (NM_005019, intron 10 of 14) 51698 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 196.167-19 chr17 74602140 74602380 + 1.83333 NA intron (NR_158152, intron 1 of 3) intron (NR_158152, intron 1 of 3) 2420 NR_158152 101928343 Hs.93825 NR_158152 LOC101928343 - uncharacterized LOC101928343 ncRNA 420.666-4 chr20 13501384 13501793 + 1.83333 NA intron (NR_136631, intron 10 of 13) L1MEg|LINE|L1 137344 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 214.667-32 chr5 6254910 6255127 + 1.83333 NA Intergenic Intergenic 82274 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 386.666-2 chr10 88431313 88431714 + 1.83333 NA intron (NM_018363, intron 4 of 6) L1MEc|LINE|L1 151805 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 247.833-19 chr6 117350273 117350528 + 1.83333 NA intron (NM_002944, intron 26 of 42) L1MC1|LINE|L1 75455 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 785.333-4 chr4 52234391 52235241 + 1.83333 NA Intergenic Intergenic 183512 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 376-10 chr8 85399485 85399986 + 1.83333 NA Intergenic L2c|LINE|L2 -21622 NM_001128829 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 207.333-53 chrX 131764690 131764825 + 1.83333 NA intron (NR_026975, intron 7 of 12) intron (NR_026975, intron 7 of 12) 65886 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 573.166 chr3 13461530 13462344 + 1.83333 NA Intergenic Intergenic 18116 NR_046690 100874101 Hs.535701 NR_046690 ENSG00000244502 HDAC11-AS1 - HDAC11 antisense RNA 1 ncRNA 453.5-3 chr18 4130639 4131293 + 1.83333 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) -133636 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 306.5-13 chr2 129539757 129540025 + 1.83333 NA Intergenic L1M4|LINE|L1 -266000 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 439.833-4 chr6 67756462 67756823 + 1.83333 NA Intergenic Intergenic -298709 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 284-6 chr12 107054867 107055074 + 1.83333 NA intron (NM_004075, intron 1 of 12) L1MEg|LINE|L1 38579 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 309-14 chr2 96315222 96315470 + 1.83333 NA Intergenic LTR40c|LTR|ERVL -9800 NM_014014 23020 Hs.246112 NM_014014 ENSG00000144028 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein U5 subunit 200 protein-coding 625.667 chr11 12412069 12412849 + 1.83333 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 34888 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 358.666-4 chr2 31887264 31887619 + 1.83333 NA intron (NM_001301852, intron 5 of 7) intron (NM_001301852, intron 5 of 7) -83461 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 266.334-7 chr8 120442507 120442793 + 1.83333 NA intron (NM_014078, intron 2 of 6) intron (NM_014078, intron 2 of 6) 2500 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 396.666-4 chr2 196131299 196131559 + 1.83333 NA Intergenic LTR25-int|LTR|ERV1 40149 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 419.667-5 chr22 32862517 32862871 + 1.83333 NA 3' UTR (NM_000362, exon 5 of 5) 3' UTR (NM_000362, exon 5 of 5) 61878 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 370.333 chr1 196662137 196662538 + 1.83333 NA intron (NM_001014975, intron 1 of 9) L1MEg|LINE|L1 10459 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 333.501-4 chr9 98862144 98862449 + 1.83333 NA Intergenic Intergenic 54626 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 233.667-12 chr14 78969148 78969384 + 1.83333 NA intron (NR_073547, intron 13 of 20) intron (NR_073547, intron 13 of 20) -230716 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 348.5-11 chr12 100555634 100555835 + 1.83333 NA intron (NR_135146, intron 9 of 10) MIR|SINE|MIR -17950 NM_001363672 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 393.333-4 chr3 62001351 62001618 + 1.83333 NA intron (NM_002841, intron 3 of 29) intron (NM_002841, intron 3 of 29) 317463 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 271.667-13 chr15 83734548 83734721 + 1.83333 NA intron (NM_207517, intron 3 of 29) intron (NM_207517, intron 3 of 29) 80511 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 329.5-20 chr8 58459578 58460038 + 1.83333 NA Intergenic Intergenic 40355 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 285.833-13 chr5 81249924 81250108 + 1.83333 NA intron (NR_034122, intron 2 of 3) L1MEd|LINE|L1 16694 NM_001099735 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 295.834-6 chr22 34036440 34036692 + 1.83333 NA Intergenic Intergenic -113678 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 225.167-30 chr8 134357125 134357330 + 1.83333 NA Intergenic (AATAT)n|Simple_repeat|Simple_repeat -240844 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 286.667-2 chr1 155061475 155061885 + 1.83333 NA intron (NM_001261465, intron 19 of 20) intron (NM_001261465, intron 19 of 20) -2060 NM_182690 1945 Hs.449913 NM_005227 ENSG00000243364 EFNA4 EFL4|EPLG4|LERK4 ephrin A4 protein-coding 298.667-19 chr5 167949888 167950424 + 1.83333 NA intron (NM_001368145, intron 2 of 26) intron (NM_001368145, intron 2 of 26) 195227 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 337.833-2 chr11 7099507 7099883 + 1.83333 NA Intergenic Intergenic 10697 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 564.166-3 chr2 83881053 83881415 + 1.83333 NA Intergenic Intergenic 358420 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 290.166-5 chr2 182977870 182978103 + 1.83333 NA intron (NM_013436, intron 14 of 30) intron (NM_013436, intron 14 of 30) 60471 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 450.999 chr4 73707902 73708355 + 1.83333 NA Intergenic Intergenic -32441 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 411.833-6 chr8 135886144 135886443 + 1.83333 NA Intergenic L1PA3|LINE|L1 428837 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 284.499 chr8 50714985 50715277 + 1.83333 NA intron (NM_001287814, intron 16 of 16) intron (NM_001287814, intron 16 of 16) 551000 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 331-4 chr10 123789343 123789592 + 1.83333 NA intron (NM_198148, intron 6 of 13) intron (NM_198148, intron 6 of 13) 102340 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 359-13 chr7 43454979 43455397 + 1.83333 NA intron (NM_015052, intron 12 of 29) intron (NM_015052, intron 12 of 29) 67354 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 320.667-14 chr6 13909017 13909328 + 1.83333 NA Intergenic Intergenic -15274 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 322.499 chr17 42244704 42244978 + 1.83333 NA intron (NM_012448, intron 1 of 18) L1ME4c|LINE|L1 31565 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 358.833-13 chr8 121743467 121743681 + 1.83333 NA Intergenic Intergenic -102134 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 381-14 chr7 78534351 78534615 + 1.83333 NA intron (NM_001301128, intron 3 of 20) (TG)n|Simple_repeat|Simple_repeat 187241 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 246.5 chr1 79955692 79955929 + 1.83333 NA Intergenic L2c|LINE|L2 -579945 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 272.167 chr1 84577154 84577513 + 1.83333 NA Intergenic L1MC1|LINE|L1 -2893 NM_004388 1486 Hs.513557 NM_004388 ENSG00000117151 CTBS CTB chitobiase protein-coding 294.667-24 chr7 132298600 132298918 + 1.83333 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 37898 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 386.666-5 chr8 85177506 85177793 + 1.83333 NA promoter-TSS (NR_134311) promoter-TSS (NR_134311) 495 NM_001083588 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 405.833 chr14 61472122 61472526 + 1.83333 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 97870 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 251-28 chr5 107848658 107848884 + 1.83333 NA Intergenic L1ME2|LINE|L1 -177834 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 352.666-4 chr16 49352836 49353115 + 1.83333 NA Intergenic MER96B|DNA|hAT-Tip100 -20829 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 204.333-19 chr2 52021957 52022081 + 1.83333 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -348629 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 302.167-7 chr19 39121974 39122444 + 1.83333 NA Intergenic Intergenic -3577 NM_001014831 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 281-24 chr6 149429557 149429871 + 1.83333 NA Intergenic Intergenic 29452 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 264.333-28 chr8 107943287 107943452 + 1.83333 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 138570 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 510.167-2 chr19 44951508 44952169 + 1.83333 NA Intergenic AluJo|SINE|Alu -2747 NM_001282176 1209 Hs.444441 NM_001294 ENSG00000104853 CLPTM1 - CLPTM1 regulator of GABA type A receptor forward trafficking protein-coding 450.332 chr6 45404851 45405181 + 1.83333 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) -17259 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 350.999-2 chrX 145404337 145404656 + 1.83333 NA Intergenic L1MB1|LINE|L1 156993 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 218.333-2 chr1 113417340 113417568 + 1.83333 NA intron (NM_001142782, intron 1 of 20) AluJo|SINE|Alu 26939 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 324.334-3 chr4 38431295 38431532 + 1.83333 NA intron (NR_110951, intron 6 of 7) intron (NR_110951, intron 6 of 7) 64499 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 377.832 chr10 59975764 59976016 + 1.83333 NA Intergenic L1MC1|LINE|L1 -14977 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 346.999 chr17 40139891 40140088 + 1.83333 NA promoter-TSS (NM_007359) promoter-TSS (NM_007359) -548 NM_007359 22794 Hs.743287 NM_007359 ENSG00000108349 CASC3 BTZ|MLN51 CASC3 exon junction complex subunit protein-coding 314.833-12 chr8 73672734 73673157 + 1.83333 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 73895 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 196.666 chr10 128734466 128734611 + 1.83333 NA Intergenic Intergenic -178295 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 341.833-2 chr2 88003771 88004038 + 1.83333 NA Intergenic Intergenic -18114 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2 like and GRIP domain containing 1 protein-coding 413-11 chr6 150635439 150635859 + 1.83333 NA intron (NR_138140, intron 1 of 2) intron (NR_138140, intron 1 of 2) 2685 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 243.333-40 chr7 114446444 114446674 + 1.83333 NA intron (NR_033767, intron 2 of 17) intron (NR_033767, intron 2 of 17) 20057 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 320.333 chr17 8578383 8578712 + 1.83333 NA intron (NM_001256012, intron 4 of 42) intron (NM_001256012, intron 4 of 42) 52178 NM_005964 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 306.666-5 chr8 55745543 55745720 + 1.83333 NA intron (NM_001286661, intron 3 of 4) intron (NM_001286661, intron 3 of 4) 27747 NR_156454 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 256.333-21 chr7 8176059 8176236 + 1.83333 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 85905 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 656.667 chr2 224347236 224347814 + 1.83333 NA Intergenic Intergenic 54469 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 197.667-11 chr11 57644092 57644277 + 1.83333 NA TTS (NM_001363487) TTS (NM_001363487) 2986 NR_029673 406919 NR_029673 ENSG00000208009 MIR130A MIRN130A|miRNA130A|mir-130a microRNA 130a ncRNA 603.501 chr3 97600856 97601329 + 1.83333 NA intron (NM_001080448, intron 12 of 17) intron (NM_001080448, intron 12 of 17) 161485 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 378.5-3 chr12 81514094 81514525 + 1.83333 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) -1918 NM_001282536 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 216.333-15 chr12 117674963 117675159 + 1.83333 NA intron (NM_173598, intron 4 of 19) L2b|LINE|L2 293929 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 459.166-3 chr6 81490953 81491279 + 1.83333 NA Intergenic Intergenic 261565 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 270.667-18 chr6 54719503 54719764 + 1.83333 NA Intergenic MIR|SINE|MIR -127138 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 268.999 chr17 78080019 78080204 + 1.83333 NA intron (NM_018996, intron 11 of 20) intron (NM_018996, intron 11 of 20) 31688 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 350.667-16 chr5 144187873 144188177 + 1.83333 NA intron (NM_020768, intron 2 of 3) AmnSINE1|SINE|5S-Deu-L2 17152 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 412.166-3 chr7 131151091 131151496 + 1.83333 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 41199 NM_001145354 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 227.166-2 chr12 8024340 8024472 + 1.83333 NA Intergenic Intergenic -8310 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 421.167-2 chr10 27879351 27879792 + 1.83333 NA intron (NM_001290021, intron 10 of 13) intron (NM_001290021, intron 10 of 13) 102300 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 468.666-3 chr9 130940977 130941479 + 1.83333 NA Intergenic Intergenic -1981 NM_032843 84929 Hs.133205 NM_032843 ENSG00000130720 FIBCD1 - fibrinogen C domain containing 1 protein-coding 321.5-20 chr6 34798369 34798726 + 1.83333 NA intron (NM_017754, intron 1 of 20) L1ME3A|LINE|L1 6464 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 264.5-28 chr9 3912801 3913188 + 1.83333 NA intron (NM_001042413, intron 6 of 10) intron (NM_001042413, intron 6 of 10) 14348 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 484-2 chr12 61607385 61607911 + 1.83333 NA Intergenic L1MA7|LINE|L1 585191 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 387.666 chr18 4546268 4546691 + 1.83333 NA Intergenic Intergenic -91172 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 570.834 chr1 42450742 42451377 + 1.83333 NA intron (NM_032257, intron 1 of 7) L1M4|LINE|L1 4963 NM_032257 84217 Hs.294009 NM_032257 ENSG00000066185 ZMYND12 - zinc finger MYND-type containing 12 protein-coding 379.499 chr12 55353753 55353987 + 1.83333 NA Intergenic MIR|SINE|MIR -11241 NM_001005497 390323 Hs.554554 NM_001005497 ENSG00000187857 OR6C75 - olfactory receptor family 6 subfamily C member 75 protein-coding 590.834-3 chr4 153750070 153750645 + 1.83333 NA intron (NM_173662, intron 2 of 8) intron (NM_173662, intron 2 of 8) 9667 NM_173662 285533 Hs.388364 NM_173662 ENSG00000145428 RNF175 - ring finger protein 175 protein-coding 334.499 chr5 82646649 82646923 + 1.83333 NA Intergenic Intergenic -193369 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 533.833-4 chr5 110478586 110479086 + 1.83333 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 35079 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 288.166-5 chr6 63520280 63520625 + 1.83333 NA Intergenic AluSz6|SINE|Alu -51560 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 246.5-11 chr14 79456223 79456407 + 1.83333 NA intron (NM_001105250, intron 1 of 6) L2b|LINE|L2 176935 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 400.333-3 chr17 69281495 69281888 + 1.83333 NA intron (NM_018672, intron 17 of 37) intron (NM_018672, intron 17 of 37) 33942 NM_018672 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 318.5-4 chr2 58719733 58719948 + 1.83333 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 199087 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 216.666-2 chr13 49205710 49205861 + 1.83333 NA intron (NM_001079673, intron 25 of 25) intron (NM_001079673, intron 25 of 25) -14553 NM_001507 2862 Hs.248126 NM_001507 ENSG00000102539 MLNR GPR38|MTLR1 motilin receptor protein-coding 435.999 chr17 59829254 59829860 + 1.83333 NA intron (NM_001329400, intron 8 of 9) intron (NM_001329400, intron 8 of 9) -11709 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 545.167 chr5 163789302 163789748 + 1.83333 NA Intergenic L1MA4|LINE|L1 283906 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 287.833-13 chr21 22643920 22644195 + 1.83333 NA Intergenic LTR80B|LTR|ERVL -435227 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 302.667-12 chr7 113420121 113420526 + 1.83333 NA Intergenic Intergenic -301741 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 228.667-7 chr12 31756829 31757075 + 1.83333 NA Intergenic LTR8B|LTR|ERV1 -27778 NR_103522 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 300.5-7 chr14 55409854 55410054 + 1.83333 NA intron (NM_014924, intron 1 of 9) L2a|LINE|L2 1904 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 400.166 chr1 12620252 12620630 + 1.83333 NA Intergenic MIRb|SINE|MIR -2231 NM_004753 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 260.5-23 chr7 38070614 38071029 + 1.83333 NA Intergenic Intergenic -107424 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 280.5-13 chr2 116115167 116115489 + 1.83333 NA Intergenic Intergenic 771513 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 251.667-32 chr6 75098894 75099184 + 1.83333 NA intron (NM_080645, intron 43 of 50) intron (NM_080645, intron 43 of 50) 29743 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 324.166-3 chr22 33251948 33252214 + 1.83333 NA Intergenic Intergenic 143552 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 191-5 chr1 206100805 206100968 + 1.83333 NA intron (NM_001369490, intron 4 of 5) intron (NM_001369490, intron 4 of 5) 16502 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 168-33 chr3 4982316 4982453 + 1.83333 NA intron (NM_003670, intron 4 of 4) intron (NM_003670, intron 4 of 4) -2423 NR_125916 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 404-5 chr2 88739180 88739615 + 1.83333 NA intron (NM_144563, intron 8 of 8) MIR|SINE|MIR -26505 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 344.5-8 chr17 14903666 14903922 + 1.83333 NA Intergenic Intergenic -111011 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 293.833-3 chr11 33281720 33281920 + 1.83333 NA intron (NM_001278162, intron 1 of 15) L1ME4b|LINE|L1 23489 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 303.166-2 chr2 88308078 88308265 + 1.83333 NA Intergenic MIRb|SINE|MIR 135032 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 576.667 chr1 42766964 42767620 + 1.83333 NA promoter-TSS (NM_024097) promoter-TSS (NM_024097) 43 NR_040733 79078 Hs.148845 NM_024097 ENSG00000164008 C1orf50 - chromosome 1 open reading frame 50 protein-coding 513.166 chr17 60170249 60170771 + 1.83333 NA intron (NR_137422, intron 8 of 11) intron (NR_137422, intron 8 of 11) 20537 NR_137422 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 265.333-19 chr6 161499434 161499743 + 1.83333 NA intron (NM_004562, intron 9 of 11) MER5A1|DNA|hAT-Charlie 28611 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 628.166 chr8 129129433 129129875 + 1.83333 NA Intergenic L1PA13|LINE|L1 111586 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 447.333 chr10 83350307 83350694 + 1.83333 NA Intergenic L1M7|LINE|L1 326589 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 239.833-19 chr8 63713524 63713704 + 1.83333 NA Intergenic Intergenic -55816 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 227.333-11 chr14 62194602 62194846 + 1.83333 NA Intergenic L1MC1|LINE|L1 -54751 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 260.833-17 chr9 129824706 129825007 + 1.83333 NA promoter-TSS (NM_000113) promoter-TSS (NM_000113) -720 NM_000113 1861 Hs.534312 NM_000113 ENSG00000136827 TOR1A DQ2|DYT1 torsin family 1 member A protein-coding 303.333-16 chr6 149505241 149505476 + 1.83333 NA 3' UTR (NM_139126, exon 13 of 13) 3' UTR (NM_139126, exon 13 of 13) -20344 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 216-40 chr5 115303354 115303542 + 1.83333 NA Intergenic Intergenic -6794 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 394.666-3 chr7 35030127 35030427 + 1.83333 NA intron (NM_015283, intron 1 of 21) intron (NM_015283, intron 1 of 21) 7208 NM_001366673 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 321.833-6 chr15 67608930 67609130 + 1.83333 NA intron (NM_001206804, intron 8 of 21) L3|LINE|CR1 59936 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 399.5-7 chr4 157992213 157992612 + 1.83333 NA Intergenic Intergenic -178340 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 557.499-2 chr8 88664988 88665398 + 1.83333 NA Intergenic L1MA9|LINE|L1 -337710 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 352.499 chr16 49922058 49922342 + 1.83333 NA Intergenic MamRep4096|DNA|hAT-Tip100 -64281 NM_001271620 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 371.333-3 chr15 61329255 61329551 + 1.83333 NA Intergenic L1ME3Cz|LINE|L1 -100101 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 323.833-3 chr17 40259677 40259943 + 1.83333 NA intron (NM_133264, intron 2 of 7) MIR|SINE|MIR -28069 NM_001254 990 Hs.405958 NM_001254 ENSG00000094804 CDC6 CDC18L|HsCDC18|HsCDC6|MGORS5 cell division cycle 6 protein-coding 393.166-7 chr8 131273798 131274052 + 1.83333 NA Intergenic AluY|SINE|Alu -233016 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 342.166-5 chr6 116672026 116672457 + 1.83333 NA Intergenic Intergenic -3431 NM_001361191 221302 Hs.29857 NM_145062 ENSG00000153975 ZUP1 C6orf113|DUB|ZUFSP zinc finger containing ubiquitin peptidase 1 protein-coding 334.666-9 chrX 50711064 50711385 + 1.83333 NA intron (NR_027121, intron 1 of 9) intron (NR_027121, intron 1 of 9) 102820 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 243.833-5 chr10 15861852 15862028 + 1.83333 NA Intergenic Intergenic -1407 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 412.666-2 chr22 26416791 26417366 + 1.83333 NA Intergenic Intergenic -12182 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 334.333-2 chr1 22709480 22709669 + 1.83333 NA Intergenic Intergenic -1264 NM_004442 2048 Hs.380705 NM_004442 ENSG00000133216 EPHB2 CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5 EPH receptor B2 protein-coding 475.833-2 chr12 118320216 118320694 + 1.83333 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 39250 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 314.166-3 chr16 71502296 71502490 + 1.83333 NA Intergenic L1ME3Cz|LINE|L1 -11418 NR_135172 105371335 Hs.564879 NR_135171 ENSG00000260520 LOC105371335 - uncharacterized LOC105371335 ncRNA 843.332 chr5 149442231 149443144 + 1.83333 NA Intergenic Intergenic 12041 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 380.833 chr11 82492928 82493197 + 1.83333 NA Intergenic L1PB2|LINE|L1 -89149 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 271.666 chr1 103241206 103241420 + 1.83333 NA Intergenic L1MC3|LINE|L1 -132791 NM_080630 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 371.999-2 chr3 95471408 95471693 + 1.83333 NA Intergenic MER101-int|LTR|ERV1 211643 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 518.334-2 chr9 35161886 35162311 + 1.83333 NA promoter-TSS (NM_001371186) promoter-TSS (NM_001371186) 89 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 581.832 chr3 41202374 41203198 + 1.83333 NA intron (NM_001904, intron 1 of 14) intron (NM_001904, intron 1 of 14) 3281 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 317.166-2 chr15 39749809 39750060 + 1.83333 NA intron (NM_152597, intron 5 of 11) L1MA9|LINE|L1 32907 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 194.5-42 chr5 59090941 59091117 + 1.83333 NA intron (NM_006203, intron 5 of 14) (ACA)n|Simple_repeat|Simple_repeat -51553 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 223.167-14 chr3 98578822 98579070 + 1.83333 NA TTS (NM_000097) TTS (NM_000097) 14665 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 302.999 chr10 63080613 63080847 + 1.83333 NA Intergenic L1MC4|LINE|L1 -52517 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 191.5-18 chr15 68941050 68941225 + 1.83333 NA intron (NM_001184780, intron 1 of 15) L1M5|LINE|L1 10612 NM_001184780 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 499.334 chr1 220603272 220603973 + 1.83333 NA intron (NM_018650, intron 5 of 17) intron (NM_018650, intron 5 of 17) 75439 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 339.333-8 chr2 172464702 172464945 + 1.83333 NA intron (NR_157573, intron 1 of 1) intron (NR_157573, intron 1 of 1) 1199 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 262.333-24 chr9 117411764 117411957 + 1.83333 NA intron (NM_014010, intron 1 of 21) intron (NM_014010, intron 1 of 21) 3197 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 324.667 chr1 48554597 48554962 + 1.83333 NA intron (NM_001323575, intron 11 of 12) MIRb|SINE|MIR -82571 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 551.999 chr10 131899945 131900587 + 1.83333 NA promoter-TSS (NM_001291310) promoter-TSS (NM_001291310) -742 NR_033191 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 255.5-15 chr18 5851973 5852147 + 1.83333 NA Intergenic Intergenic 11365 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 366.334-8 chr21 18194504 18195015 + 1.83333 NA intron (NM_001204178, intron 2 of 5) L1MA8|LINE|L1 -50074 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 297.333-10 chr2 70607162 70607363 + 1.83333 NA Intergenic Intergenic -53436 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 451.333-6 chr3 190689838 190690234 + 1.83333 NA Intergenic MER34C2|LTR|ERV1 172658 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 255.834-3 chr16 2835440 2836026 + 1.83333 NA Intergenic MIRb|SINE|MIR 5561 NM_145252 124220 Hs.105887 NM_145252 ENSG00000162078 ZG16B EECP|HRPE773|JCLN2|PAUF|PRO1567 zymogen granule protein 16B protein-coding 454-3 chr15 37891596 37892173 + 1.83333 NA Intergenic Intergenic -42723 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 381-10 chr20 18133446 18133733 + 1.83333 NA Intergenic MamRep137|DNA|TcMar-Tigger -4274 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 cytochrome c oxidase chaperone protein-coding 201.333-14 chr14 59020163 59020632 + 1.83333 NA Intergenic Intergenic -168270 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 422.666-3 chr14 22624109 22624349 + 1.83333 NA Intergenic L3|LINE|CR1 10615 NM_001348233 79549 NM_001348233 ENSG00000255804 OR6J1 OR6J1P|OR6J2 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding 265.667-4 chr1 160972830 160973090 + 1.83333 NA Intergenic Intergenic -18151 NM_080878 142683 Hs.385631 NM_080878 ENSG00000158764 ITLN2 HL-2|HL2 intelectin 2 protein-coding 422.333-5 chr8 27466404 27466756 + 1.83333 NA intron (NM_000742, intron 5 of 6) intron (NM_000742, intron 5 of 6) 12681 NM_001347708 1135 Hs.57718 NM_000742 ENSG00000120903 CHRNA2 - cholinergic receptor nicotinic alpha 2 subunit protein-coding 196.5-42 chr7 82194914 82195072 + 1.83333 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 185816 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 297-18 chr3 64189014 64189324 + 1.83333 NA intron (NR_046702, intron 1 of 3) intron (NR_046702, intron 1 of 3) 1625 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 217-12 chr19 45376262 45376519 + 1.83333 NA Intergenic Intergenic -5803 NM_000400 2068 Hs.487294 NM_000400 ENSG00000104884 ERCC2 COFS2|EM9|TFIIH|TTD|TTD1|XPD ERCC excision repair 2, TFIIH core complex helicase subunit protein-coding 514.166 chr7 23521586 23522062 + 1.83333 NA exon (NM_001362759, exon 2 of 7) exon (NM_001362759, exon 2 of 7) 10157 NM_001362761 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 379.167-11 chr9 36055137 36055527 + 1.83333 NA intron (NM_021111, intron 2 of 20) intron (NM_021111, intron 2 of 20) 18419 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 295.5-2 chr12 7965239 7965546 + 1.83333 NA Intergenic Intergenic -29205 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 294.5-14 chr17 54991688 54991972 + 1.83333 NA intron (NM_178509, intron 4 of 17) (AATAATT)n|Simple_repeat|Simple_repeat -23045 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 342.167-10 chr8 123932636 123932914 + 1.83333 NA intron (NM_001039112, intron 1 of 40) L2a|LINE|L2 80788 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 288.833-8 chr19 48637420 48637607 + 1.83333 NA promoter-TSS (NM_001352) promoter-TSS (NM_001352) -134 NM_001352 1628 Hs.414480 NM_001352 ENSG00000105516 DBP DABP|taxREB302 D-box binding PAR bZIP transcription factor protein-coding 398.333-9 chr2 125424882 125425276 + 1.83333 NA Intergenic Intergenic 692906 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 269-24 chr6 71228560 71228768 + 1.83333 NA Intergenic HAL1ME|LINE|L1 -60147 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 523.166-5 chr7 101507728 101508239 + 1.83333 NA intron (NM_133457, intron 3 of 12) MER91B|DNA|hAT-Tip100 61023 NR_103747 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 237.166-5 chr12 47248452 47248602 + 1.83333 NA Intergenic MER112|DNA|hAT-Charlie -32084 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 359.333-13 chr4 73598889 73599572 + 1.83333 NA intron (NM_001270391, intron 2 of 9) MIRc|SINE|MIR 21206 NM_001270391 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 501.666-2 chr4 35015913 35016436 + 1.83333 NA Intergenic L1PA16|LINE|L1 -746427 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 459-5 chr5 169351237 169351605 + 1.83333 NA Intergenic Intergenic -50282 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 618.332 chr4 41398987 41399381 + 1.83333 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 38377 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 374.833 chr17 29180437 29180715 + 1.83333 NA promoter-TSS (NM_203318) promoter-TSS (NM_203318) -178 NM_203318 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 276.166-2 chr5 133835949 133836184 + 1.83333 NA Intergenic L1MEg|LINE|L1 -77611 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 610.666 chr12 7642533 7643558 + 1.83333 NA Intergenic HUERS-P3-int|LTR|ERV1 22863 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 339-3 chr11 114262411 114262925 + 1.83333 NA Intergenic Intergenic -33145 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 632.333-2 chr12 15210604 15211179 + 1.83333 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 10526 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 462.833 chr15 64162991 64163387 + 1.83333 NA promoter-TSS (NM_000942) promoter-TSS (NM_000942) -34 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 287.833-10 chr2 163771708 163771982 + 1.83333 NA Intergenic Intergenic -35837 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 243-13 chr3 69746210 69746428 + 1.83333 NA intron (NM_001354605, intron 1 of 9) intron (NM_001354605, intron 1 of 9) 6855 NM_001354607 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 231.666-2 chr10 85875311 85875492 + 1.83333 NA intron (NM_017551, intron 5 of 15) L1MEd|LINE|L1 297670 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 350.5-7 chr20 44495623 44495888 + 1.83333 NA TTS (NM_198941) TTS (NM_198941) 19881 NM_024331 79183 Hs.283869 NM_024331 ENSG00000124120 TTPAL C20orf121 alpha tocopherol transfer protein like protein-coding 502.5-2 chr10 50418098 50418504 + 1.83333 NA intron (NM_147156, intron 6 of 10) CpG -169691 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 445.166-2 chr11 72431214 72431598 + 1.83333 NA intron (NM_030813, intron 1 of 16) MIRc|SINE|MIR 3125 NM_001258393 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 471.499-2 chr7 4006171 4006495 + 1.83333 NA intron (NM_152744, intron 14 of 44) intron (NM_152744, intron 14 of 44) -123352 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 274.333-14 chr2 12319821 12320093 + 1.83333 NA intron (NR_110196, intron 4 of 5) MIRc|SINE|MIR 120827 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 489.5-3 chr22 28454549 28455056 + 1.83333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -5067 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 517.167-3 chr5 17215911 17216509 + 1.83333 NA promoter-TSS (NM_001271606) promoter-TSS (NM_001271606) -613 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 315.667-15 chr7 148084198 148084485 + 1.83333 NA intron (NM_014141, intron 14 of 22) intron (NM_014141, intron 14 of 22) 412662 NR_133930 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 318.499-2 chr8 79581956 79582154 + 1.83333 NA Intergenic Intergenic -29062 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 189.5-40 chr8 114093329 114093455 + 1.83333 NA Intergenic Intergenic -656453 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 468.333 chr10 13302084 13302347 + 1.83333 NA Intergenic Intergenic -2085 NM_001323082 5264 Hs.498732 NM_006214 ENSG00000107537 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 356-14 chr3 37827717 37828076 + 1.83333 NA intron (NR_110532, intron 3 of 5) L1MEd|LINE|L1 33884 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 331.666-2 chr3 30199257 30199556 + 1.83333 NA Intergenic Intergenic -265250 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 233.5-26 chr3 22619452 22619602 + 1.83333 NA Intergenic Intergenic 583051 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 415.167-2 chr19 43987216 43987650 + 1.83333 NA intron (NM_001260486, intron 1 of 4) L1MC4|LINE|L1 3245 NM_198089 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 376.499-2 chr6 140729071 140729326 + 1.83333 NA Intergenic MLT1D|LTR|ERVL-MaLR 45384 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 363.833-5 chr2 171864949 171865216 + 1.83333 NA intron (NM_003705, intron 3 of 17) L2a|LINE|L2 29162 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 741.834 chr17 7001566 7002485 + 1.83333 NA intron (NM_000697, intron 8 of 13) intron (NM_000697, intron 8 of 13) 5976 NM_000697 239 Hs.654431 NM_000697 ENSG00000108839 ALOX12 12-LOX|12S-LOX|LOG12 arachidonate 12-lipoxygenase, 12S type protein-coding 235.333-13 chr20 9094496 9094730 + 1.83333 NA intron (NM_001172646, intron 1 of 37) L1MC5|LINE|L1 25559 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 447.666-2 chr2 210399600 210399955 + 1.83333 NA intron (NR_110606, intron 1 of 4) intron (NR_110606, intron 1 of 4) 75065 NR_110606 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 394.166 chr10 93746635 93746947 + 1.83333 NA Intergenic MIRb|SINE|MIR -11018 NM_001308275 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 677.167 chr6 124798928 124799674 + 1.83333 NA intron (NM_001040214, intron 5 of 6) intron (NM_001040214, intron 5 of 6) -163244 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 308.666-5 chr20 38686917 38687113 + 1.83333 NA Intergenic Intergenic -37471 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 413.5-6 chr7 32905045 32905548 + 1.83333 NA Intergenic MER66B|LTR|ERV1 -13536 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 324.833-5 chr3 152516347 152516740 + 1.83333 NA Intergenic Intergenic -175553 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 283.833-14 chr7 52545537 52545820 + 1.83333 NA Intergenic MER31B|LTR|ERV1 -489955 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 244.166 chr10 80222882 80223092 + 1.83333 NA Intergenic L1PA3|LINE|L1 15277 NR_038464 439990 Hs.365566 NR_038464 ENSG00000237523 LINC00857 - long intergenic non-protein coding RNA 857 ncRNA 646.834 chr10 48981110 48981733 + 1.83333 NA exon (NM_020945, exon 61 of 62) exon (NM_020945, exon 61 of 62) 4166 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 476.499 chr21 39441391 39441748 + 1.83333 NA intron (NM_152505, intron 1 of 9) intron (NM_152505, intron 1 of 9) 2633 NM_152505 150082 Hs.517284 NM_152505 ENSG00000157578 LCA5L C21orf13 lebercilin LCA5 like protein-coding 277.166-2 chr3 152304993 152305310 + 1.83333 NA intron (NM_207296, intron 1 of 7) intron (NM_207296, intron 1 of 7) 5746 NM_207293 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 278.833-5 chr11 37321170 37321652 + 1.83333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -617190 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 590.167-5 chr4 176340909 176341546 + 1.83333 NA Intergenic Intergenic 21261 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 239.333-38 chr8 130899810 130899970 + 1.83333 NA intron (NM_001115, intron 7 of 17) intron (NM_001115, intron 7 of 17) 141019 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 381.834-5 chr8 6113111 6113492 + 1.83333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 293247 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 625.833 chr16 49407689 49408384 + 1.83333 NA Intergenic Intergenic 34232 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 292.666-8 chr5 128283555 128283779 + 1.83333 NA intron (NM_001999, intron 55 of 64) L2|LINE|L2 199901 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 650.666 chr2 190088602 190089508 + 1.83333 NA Intergenic Intergenic -26326 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 381.166-2 chr17 27294114 27294350 + 1.83333 NA promoter-TSS (NR_039748) promoter-TSS (NR_039748) 118 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 570.5 chr1 74790905 74791503 + 1.83333 NA Intergenic Intergenic -57796 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 284.166-7 chr9 28750915 28751117 + 1.83333 NA intron (NM_001354574, intron 2 of 5) AluJr|SINE|Alu -31711 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 223-5 chr10 92532536 92532797 + 1.83333 NA intron (NR_136399, intron 3 of 25) intron (NR_136399, intron 3 of 25) -34905 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 290.667-12 chr2 77203684 77203945 + 1.83333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 217849 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 200.666-13 chr8 124338578 124338739 + 1.83333 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 34041 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 290.666-6 chr8 15644367 15644678 + 1.83333 NA intron (NM_001356429, intron 2 of 10) intron (NM_001356429, intron 2 of 10) 104259 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 326.167-9 chr3 3341321 3341660 + 1.83333 NA Intergenic Intergenic -161773 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 226.166 chr15 77312315 77312475 + 1.83333 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) -86991 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 343.666-4 chr8 55046207 55046562 + 1.83333 NA Intergenic L1M2c|LINE|L1 -55644 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 364.666-3 chr10 113326392 113326698 + 1.83333 NA Intergenic Intergenic 197274 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 248.833-7 chr10 120033863 120034215 + 1.83333 NA Intergenic AluSx1|SINE|Alu 75526 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 302 chr1 95916594 95916812 + 1.83333 NA Intergenic L1ME2|LINE|L1 -75365 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 413.334-3 chr10 102729021 102729650 + 1.83333 NA exon (NM_001350989, exon 6 of 13) exon (NM_001350989, exon 6 of 13) -14613 NM_001083913 54838 Hs.500897 NM_017787 ENSG00000166272 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1 like protein-coding 225.5-29 chr8 100572302 100572588 + 1.83333 NA TTS (NM_001363720) TTS (NM_001363720) -12686 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 224.333-3 chr1 169312983 169313177 + 1.83333 NA intron (NR_104229, intron 3 of 12) intron (NR_104229, intron 3 of 12) 54717 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 199.333-34 chr3 96593050 96593254 + 1.83333 NA Intergenic Intergenic -221442 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 247-33 chr8 117854053 117854282 + 1.83333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 66746 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 206.666-3 chr16 58843842 58843981 + 1.83333 NA Intergenic Intergenic -109595 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 569.5 chr19 495433 495875 + 1.83333 NA promoter-TSS (NM_130762) promoter-TSS (NM_130762) -832 NM_130760 8174 Hs.102598 NM_130760 ENSG00000099866 MADCAM1 MACAM1 mucosal vascular addressin cell adhesion molecule 1 protein-coding 208.833-24 chr5 135426270 135426532 + 1.83333 NA Intergenic Intergenic 20947 NM_130848 140947 Hs.152477 NM_130848 ENSG00000251380 DCANP1 C5orf20|DCNP1 dendritic cell associated nuclear protein protein-coding 580.166 chr14 103075333 103075932 + 1.83333 NA Intergenic CpG -8578 NM_001330236 107984640 NM_001330236 ENSG00000283071 LBHD2 - LBH domain containing 2 protein-coding 219.666-5 chr7 17062964 17063137 + 1.83333 NA Intergenic MLT1L|LTR|ERVL-MaLR -181067 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 943.332 chr10 132457949 132458887 + 1.83333 NA Intergenic Intergenic 13229 NR_149317 170393 Hs.375059 NR_149317 C10orf91 - chromosome 10 open reading frame 91 (putative) ncRNA 170.5-33 chr4 36157768 36157885 + 1.83333 NA intron (NR_146894, intron 15 of 32) intron (NR_146894, intron 15 of 32) 86113 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 270.666 chr10 55509186 55509406 + 1.83333 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -89746 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 179.5-7 chr11 107148527 107148693 + 1.83333 NA Intergenic Intergenic -130134 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 487.999 chr2 73753641 73753992 + 1.83333 NA Intergenic LTR13|LTR|ERVK -16410 NM_001330391 51002 Hs.157401 NM_016058 ENSG00000144034 TPRKB CGI-121|CGI121|GAMOS5 TP53RK binding protein protein-coding 599.667-2 chr11 64723242 64723682 + 1.83333 NA promoter-TSS (NM_138732) promoter-TSS (NM_138732) -265 NM_138732 9379 Hs.372938 NM_015080 ENSG00000110076 NRXN2 - neurexin 2 protein-coding 277-9 chr14 34329160 34329431 + 1.83333 NA Intergenic Charlie29a|DNA|hAT-Charlie 132945 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 555.832 chr7 128311679 128312080 + 1.83333 NA intron (NM_018077, intron 18 of 18) L1MC5a|LINE|L1 32029 NM_001166135 55131 Hs.274263 NM_018077 ENSG00000106344 RBM28 ANES RNA binding motif protein 28 protein-coding 313.167-9 chr14 64759071 64759353 + 1.83333 NA intron (NM_001024858, intron 31 of 34) intron (NM_001024858, intron 31 of 34) 26474 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 415.501-2 chr6 86715558 86715803 + 1.83333 NA Intergenic Intergenic -221848 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 307.166-5 chr3 94419137 94419441 + 1.83333 NA Intergenic L1PA15|LINE|L1 356228 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 409.833-2 chr10 58647895 58648255 + 1.83333 NA intron (NM_001080512, intron 2 of 20) Tigger10|DNA|TcMar-Tigger -66940 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 366.334-11 chr5 44242835 44243226 + 1.83333 NA Intergenic MLT2B2|LTR|ERVL -145702 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 281.333-18 chr2 119234701 119234983 + 1.83333 NA intron (NM_182915, intron 2 of 5) intron (NM_182915, intron 2 of 5) 11008 NM_018234 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 370.333-11 chr5 124670366 124670741 + 1.83333 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 74559 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 287.333-2 chr11 132312227 132312622 + 1.83333 NA intron (NM_016522, intron 5 of 6) intron (NM_016522, intron 5 of 6) 28122 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 260-2 chr10 123997497 123997683 + 1.83333 NA Intergenic Tigger13a|DNA|TcMar-Tigger 94816 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 200.666-12 chr8 17650931 17651126 + 1.83333 NA intron (NM_001001931, intron 9 of 11) MIR3|SINE|MIR 25473 NM_001330470 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 283.334-7 chr2 100607420 100607720 + 1.83333 NA intron (NR_146956, intron 2 of 2) intron (NR_146956, intron 2 of 2) 3831 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 263.501-2 chr6 155648529 155648790 + 1.83333 NA Intergenic Intergenic 133815 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 262.166-8 chr5 107358778 107358960 + 1.83333 NA Intergenic Intergenic 312068 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 315.167-10 chr5 67211881 67212300 + 1.83333 NA Intergenic MLT1D|LTR|ERVL-MaLR -15291 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 427.666-3 chr8 15203814 15204162 + 1.83333 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 34443 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 271.833-11 chr3 185518680 185519089 + 1.83333 NA intron (NM_139248, intron 6 of 9) AluJb|SINE|Alu -19849 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 333.5-5 chr13 75715382 75715657 + 1.83333 NA intron (NM_005358, intron 3 of 29) intron (NM_005358, intron 3 of 29) -44801 NM_001366633 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 325.499-5 chr8 113823596 113823898 + 1.83333 NA Intergenic Intergenic -386808 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 656.833-2 chr11 72573146 72573806 + 1.83333 NA TTS (NR_126364) TTS (NR_126364) 2820 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 227.167-28 chrX 141631388 141631584 + 1.83333 NA intron (NR_037183, intron 3 of 3) MIR|SINE|MIR 5622 NM_001318917 645188 Hs.679802 NM_001318917 LOC645188 SPANX-L uncharacterized LOC645188 protein-coding 265.5-8 chr14 44818360 44818616 + 1.83333 NA Intergenic Intergenic -19362 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 268.666-8 chr8 91218142 91218329 + 1.83333 NA intron (NM_001282356, intron 1 of 19) intron (NM_001282356, intron 1 of 19) 8739 NM_001282356 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 254.5-21 chr2 175954929 175955131 + 1.83333 NA intron (NR_130941, intron 9 of 14) intron (NR_130941, intron 9 of 14) 47237 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 247.5-26 chr2 193604127 193604305 + 1.83333 NA Intergenic L1ME2|LINE|L1 -740053 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 214.333-26 chr3 3430891 3431129 + 1.83333 NA Intergenic Intergenic -251293 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 293-21 chr5 157107663 157108144 + 1.83333 NA intron (NM_032782, intron 1 of 6) PRIMA4_LTR|LTR|ERV1 1141 NM_032782 84868 Hs.710500 NM_032782 ENSG00000135077 HAVCR2 CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3 hepatitis A virus cellular receptor 2 protein-coding 531.333-2 chr14 45268465 45268973 + 1.83333 NA Intergenic Intergenic -15517 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 229.333-19 chr17 55340773 55341044 + 1.83333 NA Intergenic Intergenic 74686 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 224-43 chr6 23260417 23260715 + 1.83333 NA Intergenic L1MD1|LINE|L1 -542642 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 318-10 chr2 123365583 123366023 + 1.83333 NA Intergenic Intergenic -292322 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 550.168-2 chr8 6800604 6801461 + 1.83333 NA Intergenic Intergenic 34492 NM_207411 389610 Hs.558840 NM_207411 ENSG00000275591 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK related 5 protein-coding 339.333 chr1 31421349 31421828 + 1.83333 NA intron (NM_001199039, intron 2 of 10) intron (NM_001199039, intron 2 of 10) 7775 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 213.666-3 chr5 162309476 162309676 + 1.83333 NA Intergenic Intergenic 241934 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 178.5-29 chr3 98319388 98319515 + 1.83333 NA Intergenic ERVL-B4-int|LTR|ERVL -34403 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 475.666 chr7 37732325 37732606 + 1.83333 NA intron (NM_181791, intron 3 of 3) intron (NM_181791, intron 3 of 3) 48699 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 402.999-2 chr6 49617570 49617950 + 1.83333 NA intron (NM_000324, intron 3 of 9) intron (NM_000324, intron 3 of 9) 19114 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 417.167-4 chr17 61247597 61247991 + 1.83333 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 119910 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 235.333-26 chr8 53946381 53946564 + 1.83333 NA intron (NM_001286673, intron 2 of 4) intron (NM_001286673, intron 2 of 4) 65600 NR_104579 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 402.499 chr10 50934538 50934905 + 1.83333 NA Intergenic L1PA15|LINE|L1 -49046 NM_138932 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 417.499 chr11 29020200 29020805 + 1.83333 NA Intergenic MLT2B1|LTR|ERVL -542954 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 347.167-3 chr10 70656234 70656775 + 1.83333 NA Intergenic Intergenic -16002 NM_080722 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 459.833-4 chr16 68093963 68094684 + 1.83333 NA intron (NM_004555, intron 1 of 10) intron (NM_004555, intron 1 of 10) 8953 NM_004555 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 754-2 chr15 53717146 53717927 + 1.83333 NA intron (NM_182758, intron 3 of 19) intron (NM_182758, intron 3 of 19) 42127 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 251.166 chr15 61463395 61463911 + 1.83333 NA Intergenic L2|LINE|L2 -234351 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 193.5-35 chr4 62626625 62626780 + 1.83333 NA Intergenic Intergenic -464937 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 306.334-9 chr18 2490122 2490435 + 1.83333 NA Intergenic Intergenic 81227 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 526.166 chr16 62190365 62190829 + 1.83333 NA Intergenic Intergenic -154159 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 321.5-7 chr12 64447855 64448086 + 1.83333 NA intron (NM_007235, intron 24 of 24) intron (NM_007235, intron 24 of 24) -4150 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 282.667 chr1 42338708 42338934 + 1.83333 NA Intergenic Intergenic -2941 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 324.667-9 chr15 69414144 69414403 + 1.83333 NA promoter-TSS (NM_001281301) promoter-TSS (NM_001281301) -76 NR_160296 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 531.833-3 chr3 85548948 85549488 + 1.83333 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 44159 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 204-13 chr12 69269872 69270067 + 1.83333 NA 3' UTR (NM_001300947, exon 11 of 11) 3' UTR (NM_001300947, exon 11 of 11) 3249 NR_031692 100302182 NR_031692 ENSG00000283476 MIR1279 MIRN1279|hsa-mir-1279 microRNA 1279 ncRNA 430.666-2 chr20 650923 651215 + 1.83333 NA intron (NM_080725, intron 1 of 1) MLT1D|LTR|ERVL-MaLR 2131 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 251.5-18 chr3 127217700 127217844 + 1.83333 NA Intergenic L2a|LINE|L2 24641 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 407.167-8 chr8 9346070 9346498 + 1.83333 NA Intergenic Intergenic 21233 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 351.833-9 chr3 173045924 173046183 + 1.83333 NA intron (NM_031955, intron 3 of 10) intron (NM_031955, intron 3 of 10) 95182 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 325.333-2 chr10 11424456 11424645 + 1.83333 NA Intergenic Intergenic -79876 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 199.833-26 chr5 136960932 136961108 + 1.83333 NA Intergenic L1MEd|LINE|L1 -167177 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 457.167-2 chr3 193947027 193947465 + 1.83333 NA Intergenic Intergenic 46992 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 384.999-2 chr17 82553864 82554321 + 1.83333 NA intron (NM_004514, intron 1 of 8) AluY|SINE|Alu 34360 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 378.833-7 chr21 17414314 17414686 + 1.83333 NA Intergenic Intergenic -24390 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 407.5-7 chr14 52458051 52458413 + 1.83333 NA intron (NM_001160047, intron 16 of 20) intron (NM_001160047, intron 16 of 20) 94273 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 186.833-7 chr16 47430964 47431124 + 1.83333 NA intron (NM_030790, intron 5 of 17) L1MB5|LINE|L1 30019 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 242.5-21 chr19 50329436 50329680 + 1.83333 NA promoter-TSS (NM_004977) promoter-TSS (NM_004977) -181 NM_004977 3748 Hs.467146 NM_004977 ENSG00000131398 KCNC3 KSHIIID|KV3.3|SCA13 potassium voltage-gated channel subfamily C member 3 protein-coding 430.333-4 chr5 178886699 178887005 + 1.83333 NA Intergenic Intergenic -9061 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 347.667-4 chr12 118243220 118243461 + 1.83333 NA intron (NM_001346490, intron 5 of 21) A-rich|Low_complexity|Low_complexity -52805 NM_001346496 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 315.5-3 chr12 120257311 120257648 + 1.83333 NA intron (NM_002859, intron 1 of 10) intron (NM_002859, intron 1 of 10) -7316 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 303.166-7 chr8 25548771 25548959 + 1.83333 NA Intergenic MIR|SINE|MIR 89632 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 228-4 chr1 152083204 152083374 + 1.83333 NA TTS (NM_001008536) TTS (NM_001008536) -2365 NM_001310142 100131107 NM_001310142 LOC100131107 - putative UPF0607 protein ENSP00000383783 protein-coding 376.333-12 chr7 3324489 3324971 + 1.83333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 23478 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 553-6 chr2 11830712 11831358 + 1.83333 NA Intergenic Charlie29a|DNA|hAT-Charlie 5951 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 249.166-3 chr4 172204007 172204206 + 1.83333 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -390499 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 279-22 chr21 23190364 23190554 + 1.83333 NA Intergenic L1MCc|LINE|L1 111175 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 381.167 chr1 88813532 88813854 + 1.83333 NA exon (NM_001320709, exon 16 of 22) exon (NM_001320709, exon 16 of 22) 77874 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 281.333-29 chr9 99562116 99562333 + 1.83333 NA Intergenic L1MB3|LINE|L1 -186967 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 364.666-6 chr4 82852413 82852808 + 1.83333 NA intron (NM_016211, intron 16 of 24) intron (NM_016211, intron 16 of 24) 38543 NM_001077207 22872 Hs.370024 NM_014933 ENSG00000138674 SEC31A ABP125|ABP130|HSPC275|HSPC334|SEC31L1 SEC31 homolog A, COPII coat complex component protein-coding 324-16 chr5 89194016 89194408 + 1.83333 NA intron (NR_136219, intron 6 of 9) L1PA8A|LINE|L1 -290107 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 215.333-50 chrX 93136997 93137164 + 1.83333 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -312177 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 272.166-7 chr9 102458027 102458379 + 1.83333 NA Intergenic Intergenic -61434 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 398-13 chr2 215021226 215021518 + 1.83333 NA intron (NR_103740, intron 12 of 54) intron (NR_103740, intron 12 of 54) 10714 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 242-34 chr9 125126132 125126341 + 1.83333 NA intron (NM_173690, intron 2 of 18) MLT1F1|LTR|ERVL-MaLR 17292 NM_173690 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 225-11 chr17 44186699 44186913 + 1.83333 NA promoter-TSS (NR_148386) promoter-TSS (NR_148386) -89 NR_049730 339201 Hs.656564 NM_178542 ENSG00000267080 ASB16-AS1 C17orf65 ASB16 antisense RNA 1 ncRNA 164.333-28 chr2 47857930 47858062 + 1.83333 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 30723 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 375.999-2 chr14 68661287 68661640 + 1.83333 NA intron (NM_001321818, intron 10 of 10) MIRb|SINE|MIR -32676 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 388.333-10 chr3 171049006 171049248 + 1.83333 NA Intergenic Intergenic -22407 NM_001278658 6514 Hs.167584 NM_000340 ENSG00000163581 SLC2A2 GLUT2 solute carrier family 2 member 2 protein-coding 874.667 chr5 45793322 45794320 + 1.83333 NA Intergenic MER57E1|LTR|ERV1 -97441 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 694.166 chr1 110477320 110478263 + 1.83333 NA Intergenic MamGypLTR1c|LTR|Gypsy -2975 NR_003599 643160 Hs.532720 NR_003599 ENSG00000240194 CYMP - chymosin pseudogene pseudo 246.5-34 chr9 26629401 26629749 + 1.83333 NA Intergenic Intergenic 263227 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 228.833-16 chr5 163177574 163177850 + 1.83333 NA Intergenic Intergenic -259859 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 324.5-6 chr3 72891252 72891565 + 1.83333 NA intron (NM_001080393, intron 1 of 6) intron (NM_001080393, intron 1 of 6) 3362 NR_138564 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 282.166-3 chr18 10496908 10497296 + 1.83333 NA Intergenic L1M3|LINE|L1 -28925 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 174.666-2 chr19 56741808 56741923 + 1.83333 NA Intergenic Charlie1b|DNA|hAT-Charlie -23457 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 171.167-17 chr17 48470792 48470911 + 1.83333 NA Intergenic MIRc|SINE|MIR 26018 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 301.166-2 chr11 68174294 68174541 + 1.83333 NA intron (NR_161380, intron 6 of 10) Tigger4a|DNA|TcMar-Tigger 38879 NM_001369424 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 377-2 chr10 128265035 128265446 + 1.83333 NA Intergenic Intergenic -20710 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 634.166-2 chr8 125876050 125876520 + 1.83333 NA Intergenic Intergenic 74912 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 288.833-19 chr9 131666319 131666538 + 1.83333 NA intron (NM_001304275, intron 1 of 23) AluSx1|SINE|Alu 43414 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 485.832 chr16 59843068 59843394 + 1.83333 NA Intergenic L1M4b|LINE|L1 -12122 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 292-20 chr4 72717635 72717925 + 1.83333 NA Intergenic Intergenic -148559 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 408.833-3 chr14 104933169 104933589 + 1.83333 NA 3' UTR (NM_001308174, exon 11 of 11) 3' UTR (NM_001308174, exon 11 of 11) 8500 NM_138790 122618 Hs.407101 NM_138790 ENSG00000166428 PLD4 C14orf175 phospholipase D family member 4 protein-coding 257-25 chr4 31624741 31624992 + 1.83333 NA Intergenic Intergenic 118322 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 397.166-2 chr4 64314626 64314939 + 1.83333 NA intron (NM_001363796, intron 4 of 11) intron (NM_001363796, intron 4 of 11) 94668 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 409.667-4 chr18 59783022 59783491 + 1.83333 NA Intergenic Intergenic -85833 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 314.333-6 chr3 151327808 151327981 + 1.83333 NA 3' UTR (NM_176894, exon 2 of 2) 3' UTR (NM_176894, exon 2 of 2) 1655 NM_176894 53829 Hs.546396 NM_023914 ENSG00000181631 P2RY13 FKSG77|GPCR1|GPR86|GPR94|P2Y13|SP174 purinergic receptor P2Y13 protein-coding 474.001 chr1 107767394 107767843 + 1.83333 NA intron (NM_006113, intron 7 of 26) intron (NM_006113, intron 7 of 26) -79119 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 483.668 chr3 161272155 161272682 + 1.83333 NA Intergenic L1ME3G|LINE|L1 51128 NM_015938 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 193.667-3 chr1 94185841 94186252 + 1.83333 NA intron (NM_001328665, intron 15 of 21) intron (NM_001328665, intron 15 of 21) 51538 NM_001328667 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 669.167-3 chr5 103232261 103233152 + 1.83333 NA Intergenic Intergenic -26057 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 408-5 chr3 52339477 52339971 + 1.83333 NA intron (NM_015512, intron 8 of 77) L1MC4|LINE|L1 23405 NM_015512 25981 Hs.655469 NM_015512 ENSG00000114841 DNAH1 CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1 dynein axonemal heavy chain 1 protein-coding 199.5-23 chr19 921588 921830 + 1.83333 NA TTS (NM_032551) TTS (NM_032551) -4326 NM_005224 1820 Hs.501296 NM_005224 ENSG00000116017 ARID3A BRIGHT|DRIL1|DRIL3|E2FBP1 AT-rich interaction domain 3A protein-coding 453.667-3 chr18 3443072 3443864 + 1.83333 NA intron (NM_001278686, intron 2 of 3) AluJo|SINE|Alu -4074 NM_173207 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 369.499-2 chr2 21928224 21928460 + 1.83333 NA Intergenic Intergenic -217690 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 176.833-2 chr1 203798107 203798241 + 1.83333 NA exon (NM_001174108, exon 1 of 1) exon (NM_001174108, exon 1 of 1) 651 NM_001174108 100381270 NM_001174108 ENSG00000257315 ZBED6 MGR zinc finger BED-type containing 6 protein-coding 208.833-31 chr8 122221751 122221959 + 1.83333 NA Intergenic Tigger1|DNA|TcMar-Tigger 346789 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 242-31 chr7 81170177 81170350 + 1.83333 NA Intergenic Intergenic -247874 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 239.166 chr7 28510009 28510343 + 1.83333 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) 74561 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 220.166-3 chr19 45326246 45326427 + 1.83333 NA Intergenic MLT1N2|LTR|ERVL-MaLR -3461 NM_001824 1158 Hs.334347 NM_001824 ENSG00000104879 CKM CKMM|CPK-M|M-CK creatine kinase, M-type protein-coding 320.666-5 chr16 79607815 79608248 + 1.83333 NA Intergenic L3|LINE|CR1 -7294 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 354-2 chr1 233395316 233395647 + 1.83333 NA Intergenic Intergenic 67757 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 342.5-5 chr12 101939688 101940251 + 1.83333 NA Intergenic Intergenic 62389 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 359.5-6 chr4 149524304 149524887 + 1.83333 NA intron (NM_001363507, intron 12 of 13) intron (NM_001363507, intron 12 of 13) 291248 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 379.167 chr1 15861633 15862091 + 1.83333 NA intron (NM_015001, intron 1 of 14) AluSx3|SINE|Alu -13715 NR_024279 729614 Hs.119298 NR_024279 ENSG00000179743 FLJ37453 - uncharacterized LOC729614 ncRNA 184.166-4 chr5 116068696 116069040 + 1.83333 NA Intergenic Intergenic -16157 NR_146218 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 169.167-10 chr15 89694079 89694221 + 1.83333 NA intron (NM_001284395, intron 1 of 16) L1M4|LINE|L1 3339 NM_020212 56964 Hs.177557 NM_020212 ENSG00000140527 WDR93 - WD repeat domain 93 protein-coding 187.333-22 chr17 68825459 68825661 + 1.83333 NA Intergenic L1MD3|LINE|L1 129832 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 223.666-4 chr3 8604633 8604773 + 1.83333 NA Intergenic L1ME4a|LINE|L1 32921 NR_024065 29931 Hs.433151 NM_013343 LINC00312 ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312 long intergenic non-protein coding RNA 312 ncRNA 233-16 chr3 38496179 38496590 + 1.83333 NA promoter-TSS (NR_134938) promoter-TSS (NR_134938) 44 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 460.167-4 chr8 83005174 83005623 + 1.83333 NA Intergenic Intergenic 93294 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 358.499-4 chr9 35411978 35412259 + 1.83333 NA intron (NR_003582, intron 2 of 10) intron (NR_003582, intron 2 of 10) 5363 NR_003582 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 220-29 chr6 55745904 55746083 + 1.83333 NA Intergenic Intergenic 129597 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 278.333-13 chr19 56719420 56719686 + 1.83333 NA Intergenic Intergenic -45769 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 219.333-45 chr9 35915832 35916086 + 1.83333 NA Intergenic Intergenic 6469 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 338.333-6 chr18 5354439 5354653 + 1.83333 NA Intergenic Intergenic -57493 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 224.666-9 chr6 34783085 34783302 + 1.83333 NA Intergenic L1MD1|LINE|L1 -8890 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 333.667-6 chr2 230824219 230824929 + 1.83333 NA Intergenic Intergenic -39611 NM_001287240 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 206-13 chr14 38758381 38758592 + 1.83333 NA intron (NR_039982, intron 4 of 4) L2a|LINE|L2 -124110 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 213.666-4 chr6 11432910 11433057 + 1.83333 NA Intergenic Intergenic -50635 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 398.333-8 chr2 31210833 31211176 + 1.83333 NA intron (NM_001321270, intron 2 of 21) L1ME4a|LINE|L1 6511 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 213.334-14 chr8 79602725 79602946 + 1.83333 NA Intergenic A-rich|Low_complexity|Low_complexity -8282 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 489.5 chr19 43744992 43745679 + 1.83333 NA intron (NM_019108, intron 5 of 13) intron (NM_019108, intron 5 of 13) 9627 NM_019108 56006 Hs.466875 NM_019108 ENSG00000105771 SMG9 C19orf61|F17127_1|HBMS SMG9 nonsense mediated mRNA decay factor protein-coding 308.666 chr10 75191968 75192283 + 1.83333 NA Intergenic Intergenic -18029 NM_001324090 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 244.833-10 chr9 24696239 24696455 + 1.83333 NA Intergenic L1MD1|LINE|L1 -150450 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 346.833-10 chr8 82239008 82239199 + 1.83333 NA Intergenic Intergenic -396817 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 386.5-10 chr5 55407033 55407298 + 1.83333 NA intron (NM_015360, intron 22 of 26) intron (NM_015360, intron 22 of 26) 99176 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 231.333-26 chr4 63746749 63747004 + 1.83333 NA Intergenic Intergenic 662574 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 236.667-5 chr10 19056303 19056572 + 1.66667 NA intron (NM_001142308, intron 1 of 39) L1MA7|LINE|L1 7636 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 302.501-2 chr16 63821255 63821476 + 1.66667 NA Intergenic L1P2|LINE|L1 1300698 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 253.333-23 chr3 175587325 175587507 + 1.66667 NA intron (NM_207015, intron 10 of 13) intron (NM_207015, intron 10 of 13) 188917 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 457.501-2 chr6 130057301 130057631 + 1.66667 NA exon (NM_032438, exon 9 of 23) exon (NM_032438, exon 9 of 23) 37822 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 322.334-3 chr15 83011577 83011961 + 1.66667 NA promoter-TSS (NM_144597) promoter-TSS (NM_144597) -130 NM_001160114 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 253.334-14 chr7 91034704 91034922 + 1.66667 NA intron (NM_012395, intron 9 of 13) intron (NM_012395, intron 9 of 13) -229620 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 214.333-9 chr12 12883535 12883789 + 1.66667 NA Intergenic Intergenic -7360 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 276.334-4 chr15 42475870 42476047 + 1.66667 NA intron (NM_001366844, intron 1 of 19) intron (NM_001366844, intron 1 of 19) 15183 NM_001284307 64397 Hs.511143 NM_022473 ENSG00000103994 ZNF106 SH3BP3|ZFP106|ZNF474 zinc finger protein 106 protein-coding 237-23 chr21 34892159 34892361 + 1.66667 NA intron (NM_001754, intron 3 of 8) intron (NM_001754, intron 3 of 8) -3561 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 326.834-8 chr3 83684696 83684981 + 1.66667 NA Intergenic Intergenic 1184737 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 226.667-35 chr6 155765832 155766020 + 1.66667 NA Intergenic L4_C_Mam|LINE|RTE-X -180871 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 290.334-6 chr15 44195211 44195466 + 1.66667 NA promoter-TSS (NM_001322951) promoter-TSS (NM_001322951) -44 NR_104455 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 304.333-4 chr10 60098213 60098565 + 1.66667 NA intron (NM_001204403, intron 29 of 43) intron (NM_001204403, intron 29 of 43) 42627 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 221.667-11 chr12 86388329 86388506 + 1.66667 NA intron (NM_001351286, intron 3 of 7) intron (NM_001351286, intron 3 of 7) -131118 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 178.834-4 chr17 71142936 71143162 + 1.66667 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 59130 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 969.667 chr9 120981167 120982185 + 1.66667 NA intron (NM_001735, intron 27 of 40) MIR3|SINE|MIR -28845 NR_148450 110599590 NR_148450 C5-OT1 C5T1LNCRNA C5 3' UTR overlapping transcript 1 ncRNA 435.834-3 chr5 147558835 147559565 + 1.66667 NA promoter-TSS (NR_038902) promoter-TSS (NR_038902) -794 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 559.834-2 chr8 30254368 30254941 + 1.66667 NA Intergenic MIRc|SINE|MIR 98285 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 272.333-17 chr8 85288954 85289279 + 1.66667 NA Intergenic Intergenic 43658 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 209.667-24 chr22 41857746 41858013 + 1.66667 NA intron (NR_103834, intron 1 of 21) intron (NR_103834, intron 1 of 21) -23214 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 196.334-10 chr2 208987236 208987450 + 1.66667 NA Intergenic L1M4b|LINE|L1 -436704 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 277.5-3 chr11 107690548 107690727 + 1.66667 NA Intergenic Intergenic 21419 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 562.334-3 chr4 19225083 19225697 + 1.66667 NA Intergenic Intergenic -1026515 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 166-25 chr14 57491468 57491672 + 1.66667 NA intron (NM_001283060, intron 1 of 5) intron (NM_001283060, intron 1 of 5) 2287 NM_001283057 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 290.5-26 chr8 140393696 140394260 + 1.66667 NA intron (NM_001160372, intron 7 of 22) intron (NM_001160372, intron 7 of 22) 63766 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 277-12 chr19 42325380 42325864 + 1.66667 NA promoter-TSS (NM_001410) promoter-TSS (NM_001410) -13 NM_001271938 1954 Hs.132483 NM_001410 ENSG00000105429 MEGF8 C19orf49|CRPT2|EGFL4|SBP1 multiple EGF like domains 8 protein-coding 269-10 chr14 65746351 65746647 + 1.66667 NA Intergenic Intergenic 275397 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 214.333-23 chr20 53609326 53609650 + 1.66667 NA intron (NR_134576, intron 1 of 2) intron (NR_134576, intron 1 of 2) 1134 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 346.334 chr1 76819817 76820205 + 1.66667 NA Intergenic (ATAAGA)n|Simple_repeat|Simple_repeat -40744 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 249.667-7 chr11 109944682 109944920 + 1.66667 NA Intergenic Intergenic -148591 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 329.334-9 chr9 93154221 93154454 + 1.66667 NA Intergenic L1ME2|LINE|L1 -20086 NM_004148 4814 Hs.494457 NM_004148 ENSG00000131669 NINJ1 NIN1|NINJURIN ninjurin 1 protein-coding 365-2 chr1 212630180 212630635 + 1.66667 NA Intergenic Intergenic 5933 NM_153606 149647 Hs.129293 NM_153606 ENSG00000162771 FAM71A GARI-L4 family with sequence similarity 71 member A protein-coding 321.999-3 chr18 60528204 60528475 + 1.66667 NA Intergenic Intergenic -155564 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 364.001 chr14 23295207 23295440 + 1.66667 NA TTS (NM_001276318) TTS (NM_001276318) 7536 NM_001276318 90673 Hs.601513 NM_001276318 ENSG00000235194 PPP1R3E - protein phosphatase 1 regulatory subunit 3E protein-coding 368.5-5 chr12 42565022 42565500 + 1.66667 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 24485 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 304.334 chr1 57242752 57243114 + 1.66667 NA intron (NM_001353980, intron 5 of 5) L2c|LINE|L2 180179 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 338.167-9 chr8 105287134 105287353 + 1.66667 NA Intergenic L1ME3C|LINE|L1 -31195 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 177.667-9 chr12 124258906 124259054 + 1.66667 NA intron (NM_001347902, intron 3 of 4) intron (NM_001347902, intron 3 of 4) -30184 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 275.334-8 chr5 61685551 61685774 + 1.66667 NA intron (NR_109910, intron 5 of 7) MLT1H1|LTR|ERVL-MaLR 12770 NR_109910 101928651 Hs.662309 NR_109910 ENSG00000248529 LOC101928651 - uncharacterized LOC101928651 ncRNA 379.334-3 chr8 111043017 111043406 + 1.66667 NA Intergenic L1M4|LINE|L1 -15778 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 434.001 chr10 17670788 17671165 + 1.66667 NA intron (NM_001324287, intron 2 of 11) intron (NM_001324287, intron 2 of 11) 26825 NM_001324282 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 246.834 chr14 46400400 46400620 + 1.66667 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -70849 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 244-40 chr9 72822650 72822838 + 1.66667 NA intron (NM_138691, intron 20 of 23) intron (NM_138691, intron 20 of 23) 51365 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 384.5 chr10 120863912 120864413 + 1.66667 NA intron (NM_018117, intron 5 of 28) MIR|SINE|MIR 12800 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 470.334-2 chr5 170791575 170792159 + 1.66667 NA intron (NM_001291985, intron 3 of 8) MSTD|LTR|ERVL-MaLR 8142 NM_014211 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 408.334-5 chr4 30375207 30375469 + 1.66667 NA Intergenic Intergenic -345031 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 189.167-25 chr3 43696830 43696971 + 1.66667 NA intron (NM_001365649, intron 1 of 6) intron (NM_001365649, intron 1 of 6) -5306 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 579.167 chr10 35126500 35127172 + 1.66667 NA promoter-TSS (NM_001352467) promoter-TSS (NM_001352467) -5 NM_001881 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 297.667-19 chr3 12652400 12652632 + 1.66667 NA intron (NM_001354691, intron 1 of 16) AluSx1|SINE|Alu 10992 NM_001354690 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 322.5-2 chr1 165591784 165592137 + 1.66667 NA Intergenic AluJb|SINE|Alu -9805 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LRRC52-AS1 - LRRC52 antisense RNA 1 ncRNA 497.667-3 chr21 34630336 34631074 + 1.66667 NA Intergenic Intergenic -15592 NM_004414 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 377.334-2 chr11 82592826 82593109 + 1.66667 NA Intergenic MER110-int|LTR|ERV1 140897 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 353.501-2 chr2 50951540 50951888 + 1.66667 NA intron (NM_004801, intron 2 of 21) MER20B|DNA|hAT-Charlie 80418 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 180.667-5 chr1 195918943 195919158 + 1.66667 NA Intergenic Intergenic 169665 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 199.333-10 chr11 33544785 33545057 + 1.66667 NA exon (NM_012194, exon 3 of 21) exon (NM_012194, exon 3 of 21) 155819 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 434.167-3 chr7 77657577 77658145 + 1.66667 NA non-coding (NR_134251, exon 4 of 4) non-coding (NR_134251, exon 4 of 4) 38404 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 270-33 chr5 150304651 150304901 + 1.66667 NA Intergenic MIR|SINE|MIR -1871 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 761.666 chr11 43327181 43328170 + 1.66667 NA intron (NR_024625, intron 8 of 14) MIR3|SINE|MIR 15679 NR_024625 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 348.667-5 chr14 38946550 38946944 + 1.66667 NA Intergenic Intergenic -29865 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 495.833-3 chr3 189958185 189958960 + 1.66667 NA intron (NM_018192, intron 14 of 14) MER20|DNA|hAT-Charlie 128650 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 642.167-2 chr17 3863340 3864274 + 1.66667 NA intron (NM_172206, intron 15 of 15) intron (NM_172206, intron 15 of 15) -17561 NM_001114118 55421 Hs.120963 NM_018553 ENSG00000074356 NCBP3 C17orf85|ELG|HSA277841 nuclear cap binding subunit 3 protein-coding 292.667-3 chr15 55774320 55774821 + 1.66667 NA Intergenic Intergenic -31418 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 312.333-8 chr12 7236347 7236698 + 1.66667 NA Intergenic MARNA|DNA|TcMar-Mariner 46160 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 189.334-5 chr19 28291013 28291241 + 1.66667 NA Intergenic Intergenic -315561 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 460.501 chr10 90021439 90021901 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -64297 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 322.001-5 chr8 48320066 48320548 + 1.66667 NA Intergenic Intergenic -231260 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 432.667 chr1 155391888 155392319 + 1.66667 NA intron (NM_001366177, intron 7 of 27) L1MEb|LINE|L1 -41077 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 259.667-18 chr6 122468055 122468225 + 1.66667 NA intron (NM_020755, intron 1 of 9) HAL1b|LINE|L1 3667 NM_020755 57515 Hs.146668 NM_020755 ENSG00000111897 SERINC1 TDE1L|TDE2|TMS-2|TMS2 serine incorporator 1 protein-coding 348.501 chr10 103485904 103486305 + 1.66667 NA intron (NR_120675, intron 3 of 3) intron (NR_120675, intron 3 of 3) -6864 NM_001129742 119395 Hs.364624 NM_182494 ENSG00000183128 CALHM3 FAM26A|bA225H22.7 calcium homeostasis modulator 3 protein-coding 453.333 chr5 59505955 59506452 + 1.66667 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 80295 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 493.834-3 chr5 169583399 169583966 + 1.66667 NA promoter-TSS (NM_001329642) promoter-TSS (NM_001329642) -91 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 388-10 chr4 35938940 35939372 + 1.66667 NA Intergenic Intergenic 304783 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 257.5-34 chr9 128414640 128414932 + 1.66667 NA intron (NR_031672, intron 2 of 2).4 L2b|LINE|L2 -4374 NM_001286760 51148 Hs.495230 NM_016174 ENSG00000167123 CERCAM CEECAM1|GLT25D3 cerebral endothelial cell adhesion molecule protein-coding 393.334-4 chr4 60432866 60433338 + 1.66667 NA Intergenic L1PA16|LINE|L1 -489517 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 180.667-46 chr8 81007773 81008192 + 1.66667 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 104086 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 304.334-13 chr7 138692984 138693333 + 1.66667 NA Intergenic HAL1ME|LINE|L1 -14113 NM_001139456 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 350.501-2 chr17 53524366 53524645 + 1.66667 NA Intergenic L1MB5|LINE|L1 -298422 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 265.5-30 chr7 86079277 86079546 + 1.66667 NA Intergenic Intergenic -564498 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 300.334-8 chr9 107484085 107484355 + 1.66667 NA TTS (NM_004235) TTS (NM_004235) 5549 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 373.834-5 chr8 131904789 131905268 + 1.66667 NA 5' UTR (NM_001323554, exon 1 of 23) 5' UTR (NM_001323554, exon 1 of 23) 935 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 323.667-16 chr2 177604612 177604875 + 1.66667 NA Intergenic Intergenic 13999 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 375.334-2 chr15 64356226 64356631 + 1.66667 NA promoter-TSS (NM_001329605) promoter-TSS (NM_001329605) -255 NM_022048 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 221.834-2 chr13 94176690 94176943 + 1.66667 NA intron (NR_046535, intron 3 of 3) X1_LINE|LINE|CR1 11175 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 264.334-9 chr6 55306794 55307230 + 1.66667 NA Intergenic Intergenic -20457 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 326-14 chr5 51776351 51776794 + 1.66667 NA Intergenic MER41B|LTR|ERV1 -231459 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 231.667-30 chr7 112789276 112789724 + 1.66667 NA intron (NM_001287497, intron 1 of 5) MIRc|SINE|MIR 893 NM_001287497 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 288.334-6 chr14 23095530 23095974 + 1.66667 NA promoter-TSS (NM_001164815) promoter-TSS (NM_001164815) -138 NM_014977 22985 Hs.124490 NM_014977 ENSG00000100813 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 290.334-9 chr2 234113834 234114189 + 1.66667 NA Intergenic L1MEc|LINE|L1 63309 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 284.333-13 chr3 80919215 80919630 + 1.66667 NA Intergenic Intergenic -74446 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 289.666-4 chr4 150206025 150206275 + 1.66667 NA intron (NR_036614, intron 5 of 16) intron (NR_036614, intron 5 of 16) 127705 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 273-20 chr3 130965090 130965336 + 1.66667 NA intron (NM_001001485, intron 14 of 27) L2b|LINE|L2 61641 NM_001288950 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 270.334-10 chr5 118459392 118459720 + 1.66667 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 102561 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 211.834 chr1 183528892 183529364 + 1.66667 NA intron (NM_001331007, intron 8 of 23) intron (NM_001331007, intron 8 of 23) 56629 NM_001331007 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 404.834-4 chr20 16822242 16822573 + 1.66667 NA Intergenic L1PA16|LINE|L1 74054 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 523.334 chr18 34960085 34960446 + 1.66667 NA Intergenic Intergenic -16663 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 295.834-4 chr18 1403019 1403258 + 1.66667 NA Intergenic Intergenic -43509 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 265.833-9 chr2 11265080 11265334 + 1.66667 NA intron (NM_001321643, intron 3 of 32) intron (NM_001321643, intron 3 of 32) 79429 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 451.834-2 chr3 152863689 152864121 + 1.66667 NA Intergenic Intergenic 28774 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 231.667-17 chr3 73962387 73962603 + 1.66667 NA Intergenic Intergenic 153251 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 301.334-9 chr7 113298573 113298857 + 1.66667 NA Intergenic L2a|LINE|L2 -180133 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 216-37 chr4 108100613 108100800 + 1.66667 NA intron (NM_001130713, intron 3 of 10) MER63A|DNA|hAT-Blackjack 66091 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 406.001-4 chr8 26356304 26356653 + 1.66667 NA intron (NM_001177591, intron 4 of 9) intron (NM_001177591, intron 4 of 9) 26475 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 263.5-12 chr17 67085585 67085866 + 1.66667 NA intron (NM_001330447, intron 32 of 32) intron (NM_001330447, intron 32 of 32) 41171 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 373.501 chr18 8080089 8080408 + 1.66667 NA intron (NM_002845, intron 9 of 30) L1ME3G|LINE|L1 286786 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 532.334-4 chr4 114694670 114695047 + 1.66667 NA Intergenic Intergenic 38099 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 251.834-7 chr3 36541067 36541492 + 1.66667 NA intron (NM_001292049, intron 8 of 8) MLT1L|LTR|ERVL-MaLR 160792 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 457.501 chr13 92807985 92808353 + 1.66667 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -86555 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 295.334 chr10 96605348 96605675 + 1.66667 NA intron (NM_152309, intron 14 of 16) intron (NM_152309, intron 14 of 16) -18499 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 348.666-8 chr18 59277749 59278103 + 1.66667 NA Intergenic Intergenic -4472 NM_013435 30062 Hs.278957 NM_013435 ENSG00000134438 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 223-37 chr5 36905442 36905612 + 1.66667 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 28758 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 298.667-9 chr19 43316932 43317181 + 1.66667 NA Intergenic HERVIP10F-int|LTR|ERV1 -32000 NR_026881 23574 Hs.721578 NR_026881 PRG1 - p53-responsive gene 1 ncRNA 221.667-14 chr14 26915547 26915697 + 1.66667 NA TTS (NR_110041) TTS (NR_110041) 6980 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 189-32 chr3 71118548 71118708 + 1.66667 NA intron (NR_146142, intron 6 of 19) intron (NR_146142, intron 6 of 19) 11958 NM_001244815 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 233-20 chr3 179341194 179341428 + 1.66667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -6398 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 233.334-3 chr2 67969359 67969554 + 1.66667 NA Intergenic L1ME3G|LINE|L1 93548 NM_173177 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 262.334-7 chr12 125759322 125759530 + 1.66667 NA Intergenic MLT1J|LTR|ERVL-MaLR 136974 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 219.334-4 chr17 82647259 82647401 + 1.66667 NA intron (NM_019613, intron 1 of 9) intron (NM_019613, intron 1 of 9) 1114 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 249.667-17 chr2 108184702 108184855 + 1.66667 NA intron (NR_131251, intron 1 of 4) intron (NR_131251, intron 1 of 4) 33063 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 359.334-7 chr9 97990185 97990516 + 1.66667 NA intron (NM_006401, intron 1 of 6) intron (NM_006401, intron 1 of 6) 7009 NM_006401 10541 Hs.730654 NM_006401 ENSG00000136938 ANP32B APRIL|PHAPI2|SSP29 acidic nuclear phosphoprotein 32 family member B protein-coding 331.167-9 chr20 50579862 50580402 + 1.66667 NA intron (NM_002827, intron 8 of 9) intron (NM_002827, intron 8 of 9) -5654 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 360.334-3 chr3 107723309 107723565 + 1.66667 NA intron (NM_001276286, intron 5 of 16) L1PA5|LINE|L1 154631 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 317.334-9 chr3 164489163 164489509 + 1.66667 NA Intergenic Tigger17a|DNA|TcMar-Tigger -317780 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 309.001 chr8 105939741 105939931 + 1.66667 NA intron (NR_125797, intron 1 of 4) L2a|LINE|L2 120667 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 435.834-5 chrX 24623594 24623958 + 1.66667 NA intron (NM_001163264, intron 1 of 7) intron (NM_001163264, intron 1 of 7) 23571 NM_001163265 9468 Hs.660708 NM_004845 ENSG00000102230 PCYT1B CCTB|CTB phosphate cytidylyltransferase 1, choline, beta protein-coding 424.501 chr11 68592420 68592729 + 1.66667 NA intron (NR_147971, intron 19 of 24) intron (NR_147971, intron 19 of 24) -91970 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 482-11 chr4 64619869 64620352 + 1.66667 NA Intergenic L1ME2z|LINE|L1 -210650 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 475.668 chr3 196579059 196579405 + 1.66667 NA intron (NM_001105573, intron 2 of 2) intron (NM_001105573, intron 2 of 2) -10558 NM_001345911 348793 Hs.385865 NM_182627 ENSG00000185798 WDR53 - WD repeat domain 53 protein-coding 215-34 chr5 127500571 127500798 + 1.66667 NA Intergenic Intergenic -16956 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 306.667-17 chr3 51142536 51142880 + 1.66667 NA intron (NM_004947, intron 9 of 52) L1ME1|LINE|L1 -242583 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 362-16 chr5 167050512 167051121 + 1.66667 NA Intergenic Intergenic -22426 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 251-4 chr12 11792865 11793077 + 1.66667 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 143117 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 315.501 chr15 64054765 64055081 + 1.66667 NA Intergenic HAL1ME|LINE|L1 -8438 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 352.501 chr10 59233402 59233663 + 1.66667 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 56065 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 557-3 chr3 87355324 87356003 + 1.66667 NA Intergenic Intergenic -79079 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 295.833-5 chr3 48013213 48013514 + 1.66667 NA intron (NM_002375, intron 1 of 18) intron (NM_002375, intron 1 of 18) 75485 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 315.333-23 chr8 112408119 112408515 + 1.66667 NA intron (NM_001363185, intron 30 of 66) intron (NM_001363185, intron 30 of 66) -235176 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 290.833-10 chr7 4832261 4832582 + 1.66667 NA intron (NM_018059, intron 4 of 14) intron (NM_018059, intron 4 of 14) 5029 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 244.5-27 chr5 32361397 32361734 + 1.66667 NA intron (NM_016107, intron 19 of 19) intron (NM_016107, intron 19 of 19) 32910 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 319.167-4 chr12 56143504 56143842 + 1.66667 NA intron (NM_001184796, intron 30 of 30) intron (NM_001184796, intron 30 of 30) -8914 NM_001199629 140465 Hs.632731 NM_002475 ENSG00000196465 MYL6B MLC1SA myosin light chain 6B protein-coding 324.5-13 chr8 57996659 57997134 + 1.66667 NA intron (NM_147189, intron 1 of 4) intron (NM_147189, intron 1 of 4) 2373 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 166.334-2 chr12 85877591 85877736 + 1.66667 NA intron (NM_006183, intron 2 of 3) L1PA10|LINE|L1 3368 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 352-16 chr9 135918759 135919106 + 1.66667 NA Intergenic L1MB3|LINE|L1 -11386 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 241-7 chr15 55207932 55208273 + 1.66667 NA intron (NM_183235, intron 6 of 6) L1ME3Cz|LINE|L1 -11161 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 290.834-4 chr12 86321321 86321541 + 1.66667 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -64132 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 164.834-9 chr9 102980304 102980402 + 1.66667 NA Intergenic Intergenic -14980 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 219-7 chr15 58039839 58040276 + 1.66667 NA intron (NM_170696, intron 1 of 11) intron (NM_170696, intron 1 of 11) -25168 NR_147215 283665 Hs.638961 NR_147215 LOC283665 - uncharacterized LOC283665 ncRNA 164.334-7 chr9 35759779 35759963 + 1.66667 NA Intergenic Intergenic -5595 NM_001044264 692094 Hs.571601 NM_001044264 ENSG00000215183 MSMP PSMP microseminoprotein, prostate associated protein-coding 335.334 chr1 46084289 46084647 + 1.66667 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 46205 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 319.001-5 chr8 115467539 115468066 + 1.66667 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 200211 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 384.167-4 chr18 21987169 21987606 + 1.66667 NA Intergenic L1MD1|LINE|L1 -155981 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 451.501 chr2 213152738 213153094 + 1.66667 NA promoter-TSS (NM_001371274) promoter-TSS (NM_001371274) -460 NM_001371277 309.667-6 chr12 76183347 76183691 + 1.66667 NA Intergenic LTR78|LTR|ERV1 -76364 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 319.001 chr11 98795495 98795842 + 1.66667 NA Intergenic (TTTTTC)n|Simple_repeat|Simple_repeat -225281 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 434-4 chr12 61751521 61752214 + 1.66667 NA intron (NM_178539, intron 4 of 4) intron (NM_178539, intron 4 of 4) 440972 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 297.667-15 chr2 67260738 67261063 + 1.66667 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) -45581 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 396.334-7 chrX 22748249 22748650 + 1.66667 NA intron (NR_073010, intron 3 of 11) intron (NR_073010, intron 3 of 11) -251511 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 195-16 chr15 82146795 82147102 + 1.66667 NA intron (NM_001040610, intron 16 of 17) L3|LINE|CR1 58354 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 299.5-21 chr8 89851244 89851643 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -50425 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 254.334-9 chr8 116940401 116940674 + 1.66667 NA intron (NM_001025357, intron 1 of 1) MamRTE1|LINE|RTE-BovB 2330 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 306.834 chr10 14432628 14432983 + 1.66667 NA Intergenic (TCACAT)n|Simple_repeat|Simple_repeat -3771 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 291.167-5 chr12 110917201 110917787 + 1.66667 NA intron (NM_000432, intron 2 of 6) (ACAA)n|Simple_repeat|Simple_repeat 3106 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 217.5-18 chr4 186179978 186180146 + 1.66667 NA Intergenic L1ME3|LINE|L1 11428 NR_046264 651430 Hs.727796 NR_046264 ENSG00000279943 FLJ38576 - uncharacterized LOC651430 ncRNA 193.333-46 chr3 196407032 196407209 + 1.66667 NA intron (NM_015562, intron 2 of 10) intron (NM_015562, intron 2 of 10) -24265 NR_046745 100874034 Hs.617990 NR_046745 UBXN7-AS1 - UBXN7 antisense RNA 1 ncRNA 281.334-8 chr22 43818466 43818781 + 1.66667 NA Intergenic Intergenic -6318 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 463.334-2 chr4 76758264 76758744 + 1.66667 NA intron (NM_020859, intron 8 of 10) intron (NM_020859, intron 8 of 10) 139640 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 324.334 chr1 71642994 71643275 + 1.66667 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 193878 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 416.001 chr2 107625686 107625991 + 1.66667 NA Intergenic L1MEg|LINE|L1 96419 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 262.333 chr1 56795656 56795896 + 1.66667 NA intron (NM_001004303, intron 1 of 19) intron (NM_001004303, intron 1 of 19) 23628 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 223.333-11 chr11 22590065 22590308 + 1.66667 NA Intergenic Intergenic 35655 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 491.5-2 chr19 33430614 33431104 + 1.66667 NA intron (NM_001166056, intron 7 of 12) intron (NM_001166056, intron 7 of 12) 56335 NM_001252296 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT enhancer binding protein gamma protein-coding 222-23 chr4 169661696 169661861 + 1.66667 NA intron (NM_001243374, intron 1 of 11) intron (NM_001243374, intron 1 of 11) 1716 NM_001243374 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 284.667-19 chr9 27816866 27817075 + 1.66667 NA Intergenic MER58A|DNA|hAT-Charlie -243104 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 360.334-4 chr3 151468178 151468458 + 1.66667 NA Intergenic Intergenic -9609 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 190.5-23 chr2 75130298 75130507 + 1.66667 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 39590 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 327.667-3 chr10 120553097 120553331 + 1.66667 NA intron (NM_001030059, intron 5 of 6) MLT1A0|LTR|ERVL-MaLR -44735 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 271-2 chr10 53016125 53016418 + 1.66667 NA Intergenic L1MEd|LINE|L1 -244571 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 179.667-19 chr2 61048805 61049127 + 1.66667 NA 3' UTR (NM_002618, exon 4 of 4) 3' UTR (NM_002618, exon 4 of 4) -16904 NM_001330434 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 321.167-18 chr6 149840210 149840688 + 1.66667 NA intron (NM_032832, intron 3 of 6) intron (NM_032832, intron 3 of 6) -23049 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 346.667-6 chr12 65685960 65686297 + 1.66667 NA Intergenic MER20B|DNA|hAT-Charlie -43756 NR_120434 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 206.834-2 chr1 51044864 51045089 + 1.66667 NA Intergenic Intergenic -14861 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 223-34 chr3 147678637 147678825 + 1.66667 NA Intergenic L1M5|LINE|L1 257404 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 332.001-4 chr3 95197264 95197545 + 1.66667 NA Intergenic L1MC4|LINE|L1 259141 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 383.334 chr15 95755647 95755923 + 1.66667 NA Intergenic AluJr4|SINE|Alu 322692 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 175-53 chr7 81573758 81574150 + 1.66667 NA Intergenic Intergenic -12135 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 323-21 chr4 51886497 51886879 + 1.66667 NA intron (NM_001040402, intron 6 of 10) intron (NM_001040402, intron 6 of 10) 43109 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 410-4 chr15 24835178 24835752 + 1.66667 NA intron (NM_001349459, intron 2 of 11) intron (NM_001349459, intron 2 of 11) 11857 NM_001349456 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 324.834-2 chr12 65765546 65765805 + 1.66667 NA intron (NR_026825, intron 1 of 1) intron (NR_026825, intron 1 of 1) -58785 NM_001330190 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 391.001 chr4 108394253 108394519 + 1.66667 NA Intergenic MLT1F2|LTR|ERVL-MaLR -162847 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 403.667 chr12 1533156 1533448 + 1.66667 NA Intergenic Intergenic -1110 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 192.667-38 chr8 99031019 99031166 + 1.66667 NA intron (NR_047582, intron 2 of 8) MER6|DNA|TcMar-Tigger 17826 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 501.668 chr1 237452364 237452713 + 1.66667 NA intron (NM_001035, intron 14 of 104) (AT)n|Simple_repeat|Simple_repeat -18581 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 285-23 chr9 74895939 74896201 + 1.66667 NA Intergenic Intergenic -8149 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 270-3 chr1 212293589 212294021 + 1.66667 NA intron (NM_006243, intron 1 of 12) intron (NM_006243, intron 1 of 12) -8053 NM_001199756 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 326.334-4 chr15 48230971 48231262 + 1.66667 NA intron (NM_001184832, intron 7 of 26) intron (NM_001184832, intron 7 of 26) 24814 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 239-33 chr7 5187490 5187684 + 1.66667 NA Intergenic L1M5|LINE|L1 -2646 NM_001033519 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 289.334-6 chr3 99320968 99321254 + 1.66667 NA Intergenic MER103C|DNA|hAT-Charlie -317483 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 247.5-32 chr3 20214577 20214849 + 1.66667 NA Intergenic Kanga1c|DNA|TcMar-Tc2 -28480 NM_001012413 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 346.501-2 chr15 47988085 47988403 + 1.66667 NA Intergenic Intergenic -132746 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 178.334-3 chr15 96861649 96861856 + 1.66667 NA Intergenic Intergenic 78317 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 317.334-8 chr22 26878101 26878305 + 1.66667 NA intron (NR_146604, intron 4 of 5) L1MEg2|LINE|L1 17992 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 435-4 chr7 102836430 102836707 + 1.66667 NA intron (NM_001287150, intron 16 of 18) intron (NM_001287150, intron 16 of 18) -76432 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 288.334-5 chr12 22970921 22971147 + 1.66667 NA Intergenic MIR|SINE|MIR -204602 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 209.167-27 chr7 77437457 77437616 + 1.66667 NA Intergenic Intergenic -21187 NM_001350900 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 829.001 chr8 74853189 74853976 + 1.66667 NA 3' UTR (NM_001324403, exon 6 of 6) 3' UTR (NM_001324403, exon 6 of 6) 29048 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 315-10 chr22 46083026 46083236 + 1.66667 NA Intergenic Intergenic -2866 NR_027033 400931 Hs.235838 NM_207477 ENSG00000197182 MIRLET7BHG linc-Ppara MIRLET7B host gene ncRNA 214.667-17 chr2 78720806 78721031 + 1.66667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 175387 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 245.667-18 chr4 127806128 127806339 + 1.66667 NA intron (NM_001317383, intron 9 of 17) L1ME4b|LINE|L1 22710 NM_001317382 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 165.833-7 chr10 86185835 86186005 + 1.66667 NA intron (NM_017551, intron 3 of 15) L1MC|LINE|L1 78868 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 548.833-3 chr5 138068671 138069435 + 1.66667 NA Intergenic MIR3|SINE|MIR -14839 NM_058244 7478 Hs.591274 NM_031933 ENSG00000061492 WNT8A WNT8D Wnt family member 8A protein-coding 302.501 chr12 9722495 9722686 + 1.66667 NA TTS (NM_172004) TTS (NM_172004) 10709 NM_001267701 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 423.168 chr8 37142266 37142653 + 1.66667 NA Intergenic Intergenic 351454 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 283.833-10 chr22 26504189 26504516 + 1.66667 NA intron (NM_001346861, intron 6 of 14) intron (NM_001346861, intron 6 of 14) 8121 NM_012143 24144 Hs.20225 NM_012143 ENSG00000100109 TFIP11 NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6 tuftelin interacting protein 11 protein-coding 301-15 chr3 10883529 10883932 + 1.66667 NA intron (NM_014229, intron 6 of 13) intron (NM_014229, intron 6 of 13) 67502 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 507.833 chr1 24683443 24683906 + 1.66667 NA Intergenic AluSg|SINE|Alu 40095 NM_001366597 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 166-34 chr16 84551219 84551436 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -46668 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 355.167-4 chr2 54487418 54487773 + 1.66667 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 31268 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 477.334-2 chr18 42030561 42031199 + 1.66667 NA intron (NM_001308020, intron 14 of 23) Helitron3Na_Mam|RC|Helitron 75646 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 591.167-2 chr22 44697341 44697956 + 1.66667 NA intron (NM_001198721, intron 2 of 9) intron (NM_001198721, intron 2 of 9) -4550 NM_181334 553158 Hs.102336 NM_181334 ENSG00000248405 PRR5-ARHGAP8 - PRR5-ARHGAP8 readthrough protein-coding 345.334-2 chr10 107013251 107013473 + 1.66667 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 151344 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 354.667-3 chr12 81170832 81171078 + 1.66667 NA intron (NM_024560, intron 7 of 15) intron (NM_024560, intron 7 of 15) 12567 NR_039848 100616133 NR_039848 ENSG00000265227 MIR4699 - microRNA 4699 ncRNA 558.001 chr17 82154041 82154548 + 1.66667 NA 3' UTR (NM_001316321, exon 15 of 15) 3' UTR (NM_001316321, exon 15 of 15) -56058 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 213.334-3 chr1 91626048 91626331 + 1.66667 NA Intergenic (T)n|Simple_repeat|Simple_repeat 125081 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 434.501 chr1 166604272 166604727 + 1.66667 NA intron (NR_002925, intron 1 of 6) intron (NR_002925, intron 1 of 6) 583 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 395.667-9 chrX 45803295 45804051 + 1.66667 NA Intergenic Intergenic 47817 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 287.167-11 chr5 64828167 64828600 + 1.66667 NA intron (NM_005869, intron 10 of 13) MLT1A0|LTR|ERVL-MaLR 59453 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 505.001-3 chr8 104192237 104192611 + 1.66667 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -30911 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 213.5-14 chr2 73033030 73033317 + 1.66667 NA intron (NR_138476, intron 3 of 14) MIRb|SINE|MIR 25999 NM_001330407 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 411.501-2 chr12 15125277 15125692 + 1.66667 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) -26439 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 177.333-3 chr1 170126505 170126672 + 1.66667 NA Intergenic L1MD1|LINE|L1 -19459 NM_001136107 149281 Hs.553612 NM_001136107 ENSG00000203740 METTL11B C1orf184|HOMT1B|NTM1B methyltransferase like 11B protein-coding 339.667-8 chr14 74105890 74106212 + 1.66667 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) 21098 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 375.5-7 chr5 135729673 135730108 + 1.66667 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) 73185 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 311.334-4 chr16 73919834 73920089 + 1.66667 NA Intergenic L1ME3Cz|LINE|L1 295560 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 309.834-8 chr2 141625385 141625599 + 1.66667 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 506209 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 359.999-4 chr6 146213526 146214069 + 1.66667 NA intron (NM_001278065, intron 3 of 9) Ricksha_c|DNA|MULE-MuDR 184599 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 389.667-5 chr2 139926360 139926767 + 1.66667 NA Intergenic Intergenic 660122 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 388.334-10 chr6 162964356 162964889 + 1.66667 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 89539 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 229.167-18 chr6 46446392 46446771 + 1.66667 NA intron (NM_001251973, intron 2 of 4) L1MA8|LINE|L1 44742 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 202.333-8 chr10 104121741 104121946 + 1.66667 NA promoter-TSS (NM_145247) promoter-TSS (NM_145247) -215 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 522.333-4 chrX 30504088 30504770 + 1.66667 NA Intergenic Intergenic 73337 NM_025159 80231 Hs.665009 NM_025159 ENSG00000120280 CXorf21 - chromosome X open reading frame 21 protein-coding 261.333-7 chr2 8598351 8598605 + 1.66667 NA Intergenic Intergenic -14686 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 366.5-7 chr5 120189209 120189620 + 1.66667 NA Intergenic Intergenic -274864 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 213.334-7 chr17 14577999 14578191 + 1.66667 NA Intergenic Intergenic 274355 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 239.667-13 chr12 127686421 127686628 + 1.66667 NA Intergenic Intergenic -30936 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 214.667-26 chr3 45126382 45126620 + 1.66667 NA intron (NM_178181, intron 1 of 3) intron (NM_178181, intron 1 of 3) 19877 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 336.834-2 chr12 9787515 9787918 + 1.66667 NA Intergenic MER4CL34|LTR|ERV1 -12336 NR_159359 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 232.167-13 chr3 155354007 155354471 + 1.66667 NA Intergenic Intergenic -60556 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 274.666-10 chr8 108706145 108706498 + 1.66667 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 81273 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 224-31 chr22 35235489 35235764 + 1.66667 NA Intergenic L1MEc|LINE|L1 -4570 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 476.834 chr12 4758243 4758580 + 1.66667 NA intron (NM_017417, intron 6 of 10) intron (NM_017417, intron 6 of 10) 38011 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 387.333-4 chr19 3327077 3327430 + 1.66667 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -32377 NM_001245005 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 202.334-3 chr14 81390031 81390189 + 1.66667 NA intron (NM_001366850, intron 4 of 7) AluSz|SINE|Alu 37665 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 238.334-9 chr16 22235459 22235636 + 1.66667 NA intron (NM_013302, intron 2 of 17).2 AluSp|SINE|Alu 29269 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K CaMKIII|HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 295.667-3 chr11 96426185 96426571 + 1.66667 NA Intergenic Intergenic 36365 NM_003772 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 244.5-30 chr7 118520235 118520464 + 1.66667 NA Intergenic MER67C|LTR|ERV1 295645 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 260.334-3 chr10 62433168 62433389 + 1.66667 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -58151 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 287-13 chr18 22659283 22659615 + 1.66667 NA Intergenic L1PA3|LINE|L1 127388 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 339.001-2 chr7 22584668 22584992 + 1.66667 NA Intergenic Intergenic 21493 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 737.5 chr6 49421100 49421915 + 1.66667 NA Intergenic Intergenic 41746 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 205.5-28 chr4 106809279 106809528 + 1.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 226910 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 186.834-7 chr5 88785559 88785733 + 1.66667 NA promoter-TSS (NM_001364353) promoter-TSS (NM_001364353) -135 NM_001364357 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 349.667-5 chr17 13030240 13030639 + 1.66667 NA Intergenic Intergenic -12375 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 688.333 chr10 21674800 21676089 + 1.66667 NA intron (NM_001195626, intron 11 of 22) MER20|DNA|hAT-Charlie 141272 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 270-12 chr13 66605081 66605268 + 1.66667 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) -219995 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 343.334-5 chr3 37445654 37446031 + 1.66667 NA Intergenic Intergenic -6299 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 289-7 chr12 547098 547403 + 1.66667 NA intron (NM_173593, intron 7 of 19) L1MA4A|LINE|L1 39236 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 352.667 chr1 86564844 86565106 + 1.66667 NA intron (NM_012128, intron 4 of 13) intron (NM_012128, intron 4 of 13) 17897 NM_012128 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 200.334-9 chr5 10453688 10453830 + 1.66667 NA intron (NM_001201466, intron 4 of 5) intron (NM_001201466, intron 4 of 5) 11880 NM_031916 83853 Hs.381089 NM_031916 ENSG00000145491 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1 like protein-coding 228.333-22 chr4 146431123 146431373 + 1.66667 NA intron (NM_001317816, intron 4 of 10) intron (NM_001317816, intron 4 of 10) 22665 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 351-14 chr7 145760244 145760583 + 1.66667 NA Intergenic Intergenic -924360 NM_001350886 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 433.167-2 chr2 55618493 55618860 + 1.66667 NA Intergenic AluSc8|SINE|Alu -1054 NM_001282850 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 416.667-8 chr5 63790820 63791196 + 1.66667 NA Intergenic MLT1N2|LTR|ERVL-MaLR 171284 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 327.667-2 chr10 103329749 103330276 + 1.66667 NA intron (NM_001011663, intron 7 of 9) AluY|SINE|Alu 21128 NM_001011663 84108 Hs.335808 NM_032154 ENSG00000156374 PCGF6 MBLR|RNF134 polycomb group ring finger 6 protein-coding 328-8 chr2 63985968 63986345 + 1.66667 NA intron (NM_001005739, intron 1 of 22) L1MA3|LINE|L1 33272 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 281.834-7 chr6 158706298 158706542 + 1.66667 NA intron (NM_001242394, intron 6 of 17) MamRTE1|LINE|RTE-BovB 43017 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 273.167-6 chr16 86809773 86810153 + 1.66667 NA Intergenic Intergenic 87872 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 213.333-37 chr6 62620894 62621128 + 1.66667 NA Intergenic L1ME1|LINE|L1 -334784 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 396.334-6 chr8 132834815 132835174 + 1.66667 NA intron (NM_001277196, intron 14 of 19) intron (NM_001277196, intron 14 of 19) -31964 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 315.334-4 chr16 66663032 66663234 + 1.66667 NA intron (NM_181521, intron 1 of 3) L1PA16|LINE|L1 33610 NM_178818 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 420.333 chr15 71041267 71041605 + 1.66667 NA intron (NM_017691, intron 15 of 15) L1M5|LINE|L1 -100013 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 306.334-2 chr1 164624721 164624985 + 1.66667 NA intron (NM_001204963, intron 2 of 8) Charlie23a|DNA|hAT-Charlie 65131 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 304.334-8 chr3 172038088 172038291 + 1.66667 NA Intergenic Intergenic -1389 NM_022763 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 332.333-9 chr3 10264077 10264449 + 1.66667 NA intron (NM_014760, intron 3 of 7) HAL1|LINE|L1 15804 NM_014760 9797 Hs.475401 NM_014760 ENSG00000157014 TATDN2 - TatD DNase domain containing 2 protein-coding 239.167-15 chr14 73466334 73466555 + 1.66667 NA Intergenic Intergenic -2802 NR_135251 101928143 Hs.654609 NR_135251 ENSG00000284930 LOC101928143 - uncharacterized LOC101928143 ncRNA 353.167-5 chr2 140554969 140555462 + 1.66667 NA intron (NM_018557, intron 43 of 90) intron (NM_018557, intron 43 of 90) 31470 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 296.167-18 chr8 81651247 81651547 + 1.66667 NA Intergenic Intergenic -20120 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 174.334-8 chr3 65750787 65750960 + 1.66667 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -142943 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 238.334-13 chr3 83058929 83059122 + 1.66667 NA Intergenic Intergenic 1072883 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 655.001 chr9 21396087 21396771 + 1.66667 NA Intergenic Intergenic -11031 NM_000605 3440 Hs.211575 NM_000605 ENSG00000188379 IFNA2 IFN-alphaA|IFNA|IFNA2B|INFA2 interferon alpha 2 protein-coding 469.667-2 chr12 104958396 104958840 + 1.66667 NA promoter-TSS (NM_001352170) promoter-TSS (NM_001352170) 126 NM_001352169 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 260.167-27 chr8 133835051 133835382 + 1.66667 NA Intergenic MIR|SINE|MIR -51280 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 384.834 chr13 96929669 96930109 + 1.66667 NA Intergenic Zaphod|DNA|hAT-Tip100 54283 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 504.334 chr19 9768346 9769037 + 1.66667 NA promoter-TSS (NM_001077624) promoter-TSS (NM_001077624) 47 NR_148544 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 211-43 chr7 8177513 8177785 + 1.66667 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 84403 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 214.167-3 chr11 63081339 63081561 + 1.66667 NA intron (NM_001136506, intron 8 of 9) intron (NM_001136506, intron 8 of 9) 62771 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 283.667-12 chr5 163652583 163652788 + 1.66667 NA Intergenic L1MB7|LINE|L1 147066 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 394-8 chr4 104433721 104434038 + 1.66667 NA Intergenic Intergenic -57086 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 225.834-5 chr11 83803997 83804196 + 1.66667 NA intron (NM_001142699, intron 17 of 27) intron (NM_001142699, intron 17 of 27) -121671 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 289.167-11 chr18 6497681 6497917 + 1.66667 NA Intergenic MER66B|LTR|ERV1 -13617 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 205.333-20 chr2 85287145 85287402 + 1.66667 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 40716 NM_001368095 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 359.167 chr10 65314221 65314573 + 1.66667 NA Intergenic Intergenic -257028 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 269.5-7 chr12 48978135 48978384 + 1.66667 NA promoter-TSS (NM_005430) promoter-TSS (NM_005430) -63 NM_005430 7471 Hs.248164 NM_005430 ENSG00000125084 WNT1 BMND16|INT1|OI15 Wnt family member 1 protein-coding 215.667-41 chr7 79474922 79475137 + 1.66667 NA Intergenic L1M6|LINE|L1 21069 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 370.333-10 chr4 101911590 101912001 + 1.66667 NA intron (NM_017935, intron 6 of 16) intron (NM_017935, intron 6 of 16) 97953 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 311.334-8 chr4 94600213 94600459 + 1.66667 NA intron (NM_006457, intron 7 of 12) intron (NM_006457, intron 7 of 12) 148394 NM_001256429 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 213.833-16 chr5 53091267 53091575 + 1.66667 NA non-coding (NR_073107, exon 29 of 29) non-coding (NR_073107, exon 29 of 29) 18336 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 586.501 chr16 55703145 55703981 + 1.66667 NA 3' UTR (NM_001172502, exon 12 of 12) 3' UTR (NM_001172502, exon 12 of 12) -21362 NR_033740 390732 Hs.554599 NR_033740 CES1P2 - carboxylesterase 1 pseudogene 2 pseudo 426.834-3 chr16 8494666 8495263 + 1.66667 NA Intergenic Intergenic 94874 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 307.334-4 chr15 41362042 41362274 + 1.66667 NA intron (NM_001243144, intron 5 of 8) FLAM_A|SINE|Alu 29277 NM_001243144 51203 Hs.615092 NM_016359 ENSG00000137804 NUSAP1 ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL nucleolar and spindle associated protein 1 protein-coding 206.5-4 chr1 236609705 236609921 + 1.66667 NA Intergenic Intergenic -5297 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 292.501-3 chr13 93815884 93816162 + 1.66667 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 42450 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 271.667-5 chr10 57072931 57073192 + 1.66667 NA Intergenic MLT1C|LTR|ERVL-MaLR 231498 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 203.333-6 chr10 22452471 22452681 + 1.66667 NA Intergenic MIR|SINE|MIR -14647 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 241.667 chr1 74192078 74192294 + 1.66667 NA intron (NM_001105659, intron 1 of 7) intron (NM_001105659, intron 1 of 7) 5990 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 173.334-5 chr3 80790725 80790860 + 1.66667 NA Intergenic MIR|SINE|MIR 20088 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 327.667-10 chr22 34964825 34965115 + 1.66667 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 32946 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 440-11 chr8 123316919 123317216 + 1.66667 NA Intergenic Intergenic -30967 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 279.666-2 chr14 65165419 65165774 + 1.66667 NA Intergenic AluSx1|SINE|Alu 56751 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 500.668 chr14 22191325 22191792 + 1.66667 NA Intergenic Intergenic 241195 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 315.001-4 chr14 50467679 50467894 + 1.66667 NA intron (NM_198794, intron 10 of 31) intron (NM_198794, intron 10 of 31) 64783 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 244.333-20 chr22 20507117 20507509 + 1.66667 NA promoter-TSS (NM_015889) promoter-TSS (NM_015889) -297 NM_015889 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 208.5-3 chr10 47235766 47235927 + 1.66667 NA Intergenic L1MB7|LINE|L1 -64351 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 261.667-8 chr12 18862867 18863098 + 1.66667 NA Intergenic MLT1I|LTR|ERVL-MaLR 124863 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 277-5 chr10 56923898 56924179 + 1.66667 NA Intergenic AluJo|SINE|Alu 380521 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 318.501 chr11 46244294 46244761 + 1.66667 NA Intergenic AluJb|SINE|Alu -33135 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 327.667-12 chr5 25546240 25546495 + 1.66667 NA Intergenic L1PA16|LINE|L1 355414 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 384.5-8 chr4 117526657 117527347 + 1.66667 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 98604 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 318-17 chr5 171603778 171604058 + 1.66667 NA Intergenic L1ME3F|LINE|L1 -181954 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 291.667-10 chr3 73432448 73432870 + 1.66667 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) 1336 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 314.334-10 chrX 67297536 67297794 + 1.66667 NA Intergenic L1ME3G|LINE|L1 -246356 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 322.5-16 chr22 27336142 27336606 + 1.66667 NA Intergenic MIR|SINE|MIR 25723 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 219.333-30 chr4 94298958 94299140 + 1.66667 NA 3' UTR (NM_014485, exon 6 of 6) 3' UTR (NM_014485, exon 6 of 6) 43787 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 268.5-7 chr11 77090872 77091379 + 1.66667 NA intron (NM_004055, intron 2 of 12) intron (NM_004055, intron 2 of 12) -11715 NM_006189 4975 Hs.673853 NM_006189 ENSG00000254550 OMP - olfactory marker protein protein-coding 243.333-19 chr16 66977806 66978074 + 1.66667 NA Intergenic Intergenic 10465 NM_001185176 23491 Hs.268700 NM_012122 ENSG00000172828 CES3 ES31 carboxylesterase 3 protein-coding 209.5-23 chr21 21798337 21798483 + 1.66667 NA TTS (NR_109958) TTS (NR_109958) 51425 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 233.334-9 chr8 111037209 111037683 + 1.66667 NA Intergenic Intergenic -10013 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 317-5 chr18 31722334 31722794 + 1.66667 NA Intergenic Intergenic -37819 NM_001330570 9331 Hs.591063 NM_004775 ENSG00000118276 B4GALT6 B4Gal-T6|beta4Gal-T6 beta-1,4-galactosyltransferase 6 protein-coding 200.334-5 chr19 57923346 57923478 + 1.66667 NA intron (NM_001317028, intron 5 of 6) (AT)n|Simple_repeat|Simple_repeat -6820 NM_001297734 147687 Hs.567710 NM_152475 ENSG00000173480 ZNF417 - zinc finger protein 417 protein-coding 234.333-31 chr5 36558085 36558348 + 1.66667 NA Intergenic L1MB3|LINE|L1 -48139 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 515.334-4 chr20 20610940 20611365 + 1.66667 NA intron (NM_020343, intron 14 of 39) intron (NM_020343, intron 14 of 39) 101492 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 261.834 chr12 57742786 57743015 + 1.66667 NA promoter-TSS (NM_014770) promoter-TSS (NM_014770) -739 NM_014770 116986 Hs.302435 NM_014770 ENSG00000135439 AGAP2 CENTG1|GGAP2|PIKE ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 protein-coding 343.334-2 chr13 102239964 102240185 + 1.66667 NA intron (NM_001321940, intron 1 of 5) intron (NM_001321940, intron 1 of 5) 70612 NM_001321932 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 505.5-5 chr5 129541850 129542213 + 1.66667 NA intron (NM_133638, intron 6 of 22) MLT1N2|LTR|ERVL-MaLR -81342 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 323.667-21 chr4 173210266 173210578 + 1.66667 NA intron (NM_017423, intron 1 of 11) intron (NM_017423, intron 1 of 11) -40770 NR_134242 101930370 Hs.563191 NR_134241 ENSG00000245213 LOC101930370 - uncharacterized LOC101930370 ncRNA 333.334-2 chr10 70967761 70968117 + 1.66667 NA Intergenic Intergenic 28886 NR_134314 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 298.666-4 chr12 41951233 41951590 + 1.66667 NA Intergenic L1PA8|LINE|L1 187222 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 415.334-4 chr17 39063433 39063922 + 1.66667 NA 3' UTR (NM_020405, exon 14 of 14) 3' UTR (NM_020405, exon 14 of 14) 6658 NR_036551 100131347 Hs.676510 NR_036551 ENSG00000263818 RDM1P5 - RDM1 pseudogene 5 pseudo 199.167-27 chr8 85995071 85995245 + 1.66667 NA Intergenic Intergenic 74510 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 321.667-5 chr2 46037174 46037453 + 1.66667 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -260094 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 220.834-8 chr8 106506089 106506234 + 1.66667 NA intron (NM_001198532, intron 1 of 15) L2b|LINE|L2 58237 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 341.667-11 chr22 28252138 28252578 + 1.66667 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -207511 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 346.834-3 chr9 100601045 100601382 + 1.66667 NA Intergenic Intergenic 23134 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 209-40 chr8 81211860 81212083 + 1.66667 NA Intergenic Intergenic -68565 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 279 chr1 30718131 30718484 + 1.66667 NA promoter-TSS (NR_034182) promoter-TSS (NR_034182) -465 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 280.501-6 chr22 37516944 37517157 + 1.66667 NA intron (NM_014550, intron 2 of 19) L1ME3G|LINE|L1 2365 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 285.667-3 chr1 204499454 204499803 + 1.66667 NA Intergenic Intergenic -9282 NM_002646 5287 Hs.497487 NM_002646 ENSG00000133056 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding 315.333-18 chr4 45930896 45931297 + 1.66667 NA Intergenic MER110|LTR|ERV1 192958 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 373-9 chr5 38035249 38035687 + 1.66667 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 9771 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 233.333-26 chr6 63617039 63617242 + 1.66667 NA Intergenic Intergenic -18662 NM_001370349 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 323.167-11 chrX 85053201 85053472 + 1.66667 NA intron (NM_198450, intron 3 of 8) intron (NM_198450, intron 3 of 8) 49459 NM_198450 139322 Hs.512181 NM_198450 ENSG00000155008 APOOL CXorf33|FAM121A|MICOS27|Mic27|UNQ8193 apolipoprotein O like protein-coding 404.334-6 chr2 44476764 44477466 + 1.66667 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 115168 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 421.501-3 chr9 112074733 112075132 + 1.66667 NA intron (NM_022486, intron 12 of 16) intron (NM_022486, intron 12 of 16) 100365 NM_022486 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 258.667-5 chr12 2176040 2176215 + 1.66667 NA intron (NM_199460, intron 3 of 49).2 L2a|LINE|L2 47354 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 566.001 chr6 136547487 136547989 + 1.66667 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 3081 NM_003980 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 254.334-2 chr11 76887428 76887803 + 1.66667 NA intron (NM_001300953, intron 1 of 9) MIRc|SINE|MIR 26697 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 223.333-6 chr1 236606029 236606238 + 1.66667 NA Intergenic Intergenic -1617 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 361 chr1 170854120 170854474 + 1.66667 NA Intergenic HAL1b|LINE|L1 -81174 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 255.834 chr10 71955875 71956258 + 1.66667 NA Intergenic LTR13_|LTR|ERVK -8329 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 215.167-7 chr11 12765586 12765782 + 1.66667 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 91263 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 261.667-28 chrX 67045520 67045743 + 1.66667 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -406333 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 269-29 chr7 97305682 97305850 + 1.66667 NA Intergenic L2|LINE|L2 189173 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 191.334 chr1 189579804 189579984 + 1.66667 NA Intergenic Intergenic 896116 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 645.666-2 chr14 97977894 97978564 + 1.66667 NA promoter-TSS (NR_015430) promoter-TSS (NR_015430) -105 NR_152750 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 279.167-14 chr9 121045176 121045493 + 1.66667 NA intron (NM_001735, intron 2 of 40) Charlie29a|DNA|hAT-Charlie 4941 NM_001317164 727 Hs.494997 NM_001735 ENSG00000106804 C5 C5D|C5a|C5b|CPAMD4|ECLZB complement C5 protein-coding 239.334-10 chr5 33049526 33049689 + 1.66667 NA Intergenic L1M2a|LINE|L1 102164 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 251.834-5 chr17 77160231 77160426 + 1.66667 NA intron (NM_001143999, intron 3 of 16) intron (NM_001143999, intron 3 of 16) 19359 NM_001143999 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 223.334-8 chr6 118842793 118843010 + 1.66667 NA intron (NM_017696, intron 7 of 11) intron (NM_017696, intron 7 of 11) -51251 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 361.334-4 chr3 188668612 188668908 + 1.66667 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -20021 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 260.334-9 chr5 54233451 54233712 + 1.66667 NA intron (NM_019087, intron 1 of 4) Charlie1|DNA|hAT-Charlie 76992 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 315.334-2 chr11 81458864 81459057 + 1.66667 NA Intergenic AluSp|SINE|Alu 431876 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 203.167-38 chr9 96480666 96480910 + 1.66667 NA intron (NM_014282, intron 5 of 7) L1ME2z|LINE|L1 30619 NM_014282 22927 Hs.494567 NM_014282 ENSG00000130956 HABP4 IHABP-4|IHABP4|Ki-1/57|SERBP1L hyaluronan binding protein 4 protein-coding 240.833-9 chr2 75623830 75624069 + 1.66667 NA Intergenic L1M5|LINE|L1 -22834 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 410.666-3 chr8 79587795 79588124 + 1.66667 NA Intergenic L1MC5a|LINE|L1 -23158 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 504.167 chr17 40791691 40792006 + 1.66667 NA TTS (NM_181535) TTS (NM_181535) 8111 NM_181535 162605 Hs.59736 NM_181535 ENSG00000173908 KRT28 K25IRS4|KRT25D keratin 28 protein-coding 199.167-30 chr9 130645636 130645794 + 1.66667 NA Intergenic L1MCa|LINE|L1 -18879 NM_021619 59335 Hs.495311 NM_021619 ENSG00000130711 PRDM12 HSAN8|PFM9 PR/SET domain 12 protein-coding 285.667-18 chr6 34392647 34392926 + 1.66667 NA promoter-TSS (NM_006703) promoter-TSS (NM_006703) -117 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 278-15 chr18 4448020 4448557 + 1.66667 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 6978 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 412.334-3 chr17 68751532 68751847 + 1.66667 NA Intergenic Intergenic 123535 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 390.167-3 chr17 76408475 76408955 + 1.66667 NA intron (NM_022066, intron 1 of 17) intron (NM_022066, intron 1 of 17) 23437 NM_001142602 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 306.667-7 chr16 87635713 87635906 + 1.66667 NA intron (NM_020655, intron 1 of 4) intron (NM_020655, intron 1 of 4) 33301 NM_001271605 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 215-33 chr4 166252757 166252961 + 1.66667 NA Intergenic Intergenic 379622 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 335.001-4 chr5 172040379 172040615 + 1.66667 NA Intergenic AluSz|SINE|Alu -33624 NM_033645 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 490-4 chr3 172297903 172298362 + 1.66667 NA intron (NM_001135095, intron 8 of 25) intron (NM_001135095, intron 8 of 25) 150324 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 297.333-17 chr6 107718670 107719120 + 1.66667 NA intron (NM_001286408, intron 5 of 6) intron (NM_001286408, intron 5 of 6) 13255 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 289.334-5 chr21 25274743 25274951 + 1.66667 NA Intergenic Intergenic 156854 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 350.001-3 chr2 163504604 163504861 + 1.66667 NA Intergenic MIRc|SINE|MIR 231276 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 189.834-2 chr16 68328580 68328841 + 1.66667 NA intron (NR_147058, intron 5 of 18) intron (NR_147058, intron 5 of 18) 17596 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 487.5-5 chr1 246886442 246887080 + 1.66667 NA intron (NM_015446, intron 20 of 35) MER2|DNA|TcMar-Tigger 44597 NM_015446 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 242-11 chr17 69705686 69706004 + 1.66667 NA intron (NR_109972, intron 3 of 4) HERV16-int|LTR|ERVL 111858 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 280.5-14 chr20 57065900 57066266 + 1.66667 NA Intergenic Intergenic -147613 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 287.834-4 chr3 71674423 71674807 + 1.66667 NA TTS (NM_001282886) TTS (NM_001282886) 50787 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 178.667-38 chr6 89410454 89410729 + 1.66667 NA intron (NM_021244, intron 1 of 6) intron (NM_021244, intron 1 of 6) 1682 NM_021244 58528 Hs.31712 NM_021244 ENSG00000025039 RRAGD RAGD|bA11D8.2.1 Ras related GTP binding D protein-coding 284-4 chr10 101536491 101536900 + 1.66667 NA intron (NM_001256856, intron 11 of 13) intron (NM_001256856, intron 11 of 13) 51562 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 460.001 chr1 170927737 170928355 + 1.66667 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat -7425 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 265.334-7 chr7 61944407 61944707 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 1359499 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 290.834-11 chr5 65440954 65441266 + 1.66667 NA intron (NR_135689, intron 7 of 25) L1MEc|LINE|L1 40810 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 177.334-9 chr8 118654214 118654333 + 1.66667 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -32310 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 339.334-8 chr8 124404858 124405172 + 1.66667 NA Intergenic L2b|LINE|L2 -32316 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 303-8 chr15 64290448 64290723 + 1.66667 NA intron (NM_001329607, intron 2 of 11) L1PB4|LINE|L1 65588 NM_001329607 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 311.333-2 chr1 218516158 218516483 + 1.66667 NA intron (NR_146760, intron 1 of 2) intron (NR_146760, intron 1 of 2) 6225 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 217.667-8 chr10 70418404 70418605 + 1.66667 NA intron (NM_004096, intron 1 of 2) intron (NM_004096, intron 1 of 2) 14359 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 306.667-13 chr2 194313701 194314091 + 1.66667 NA Intergenic Intergenic -30373 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 308.667-11 chr3 71006334 71006584 + 1.66667 NA intron (NM_001244812, intron 7 of 15) intron (NM_001244812, intron 7 of 15) 58465 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 210.667-6 chr10 61424225 61424483 + 1.66667 NA intron (NR_134508, intron 4 of 6) L1ME1|LINE|L1 -28285 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 257-4 chr10 49835760 49836017 + 1.66667 NA intron (NM_001303486, intron 15 of 17) Tigger3a|DNA|TcMar-Tigger -73509 NM_001347822 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 252.5-5 chr10 64221603 64221771 + 1.66667 NA Intergenic Intergenic -603841 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 295-16 chr3 97065491 97065750 + 1.66667 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 251026 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 210.333-15 chr17 50599904 50600097 + 1.66667 NA intron (NR_046058, intron 16 of 33) intron (NR_046058, intron 16 of 33) -34881 NM_003786 8714 Hs.463421 NM_003786 ENSG00000108846 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP binding cassette subfamily C member 3 protein-coding 267-30 chr8 125135127 125135460 + 1.66667 NA intron (NM_001349486, intron 3 of 7) AluJr|SINE|Alu 43433 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 328-12 chr7 154964469 154964797 + 1.66667 NA intron (NM_007349, intron 8 of 20) HAL1|LINE|L1 36116 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 682.667-2 chr22 50342241 50342886 + 1.66667 NA promoter-TSS (NM_001365836) promoter-TSS (NM_001365836) -764 NM_001351647 9701 Hs.449098 NM_014678 ENSG00000100239 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6 regulatory subunit 2 protein-coding 163.333-43 chr4 14414156 14414319 + 1.66667 NA Intergenic L1ME4a|LINE|L1 302269 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 245-42 chr9 29580996 29581274 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -367534 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 310.167-12 chrX 149881157 149881590 + 1.66667 NA intron (NM_005364, intron 1 of 2) intron (NM_005364, intron 1 of 2) 190 NM_005364 4107 Hs.522803 NM_005364 ENSG00000156009 MAGEA8 CT1.8|MAGE8 MAGE family member A8 protein-coding 249.167-18 chr21 30714960 30715348 + 1.66667 NA Intergenic Intergenic 3623 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 248.167-14 chr21 18718139 18718460 + 1.66667 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) -32135 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 325.501-2 chr11 97722357 97722667 + 1.66667 NA Intergenic L1PB1|LINE|L1 1214087 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 443.001-2 chr3 1081965 1082428 + 1.66667 NA Intergenic HERV16-int|LTR|ERVL -10828 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 275.334-2 chr11 65860423 65860799 + 1.66667 NA non-coding (NR_146598, exon 1 of 16) non-coding (NR_146598, exon 1 of 16) 178 NR_146598 80198 Hs.288798 NM_025128 ENSG00000172732 MUS81 SLX3 MUS81 structure-specific endonuclease subunit protein-coding 482.834 chr10 36899676 36900227 + 1.66667 NA Intergenic Intergenic -225906 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 402.333-4 chr3 123328939 123329378 + 1.66667 NA intron (NM_183357, intron 5 of 20) Tigger19a|DNA|TcMar-Tigger 87184 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 372.833-7 chr2 182784853 182785444 + 1.66667 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 68891 NR_073367 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 385.334-2 chr14 58345411 58345691 + 1.66667 NA intron (NM_002892, intron 12 of 23) intron (NM_002892, intron 12 of 23) 46996 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 332.334-4 chr19 28262987 28263187 + 1.66667 NA Intergenic AluY|SINE|Alu -343601 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 448.5-8 chr5 33423200 33423811 + 1.66667 NA Intergenic Intergenic -17191 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 271-15 chr2 105474051 105474388 + 1.66667 NA Intergenic L1MB4|LINE|L1 -35706 NM_001318897 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 522.834-3 chr2 233251361 233252065 + 1.66667 NA promoter-TSS (NM_017974) promoter-TSS (NM_017974) 40 NM_017974 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 396.001-2 chr4 130747673 130748492 + 1.66667 NA Intergenic Intergenic 371721 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 550.5 chr11 77300088 77300742 + 1.66667 NA intron (NM_182833, intron 1 of 16) LTR10F|LTR|ERV1 1251 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 231-33 chr9 76366073 76366375 + 1.66667 NA Intergenic Intergenic 28202 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 300.834-8 chr22 19865199 19865459 + 1.66667 NA Intergenic L1MEf|LINE|L1 -10455 NM_053004 54584 Hs.105642 NM_053004 ENSG00000185838 GNB1L DGCRK3|FKSG1|GY2|WDR14|WDVCF G protein subunit beta 1 like protein-coding 411.667-5 chr18 59351833 59352361 + 1.66667 NA intron (NM_005570, intron 5 of 12) intron (NM_005570, intron 5 of 12) 7168 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 473.5-5 chr7 70161406 70162040 + 1.66667 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 563248 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 278.834-4 chr14 86249212 86249379 + 1.66667 NA Intergenic Intergenic 314617 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 476.501 chr16 87201605 87202053 + 1.66667 NA Intergenic Intergenic -10286 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 289.667-9 chr16 59555865 59556136 + 1.66667 NA Intergenic Intergenic 199191 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 317.5-6 chr18 51277999 51278200 + 1.66667 NA Intergenic Intergenic -80418 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 271.334 chr1 160847365 160847639 + 1.66667 NA intron (NM_001166664, intron 1 of 7) L1ME3|LINE|L1 15385 NM_001166663 51744 Hs.157872 NM_016382 ENSG00000122223 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule protein-coding 266.167-7 chr8 111256660 111256906 + 1.66667 NA Intergenic L2c|LINE|L2 -20580 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 283.334-2 chr1 58661357 58661611 + 1.66667 NA exon (NM_001085487, exon 18 of 20) exon (NM_001085487, exon 18 of 20) 38578 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 290.334-16 chr9 97468559 97468824 + 1.66667 NA intron (NM_001302884, intron 7 of 15) intron (NM_001302884, intron 7 of 15) -32489 NM_001166116 7111 Hs.404289 NM_003275 ENSG00000136842 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 362.667-12 chr9 27731159 27731587 + 1.66667 NA Intergenic Intergenic -157507 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 242.667-4 chr11 45075882 45076209 + 1.66667 NA Intergenic Intergenic -17968 NM_001359633 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 235.334-8 chr5 68532377 68532562 + 1.66667 NA Intergenic MIRb|SINE|MIR 239892 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 375.667-10 chr3 84108951 84109218 + 1.66667 NA Intergenic Intergenic 760491 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 191.334-7 chr19 11797559 11797727 + 1.66667 NA promoter-TSS (NM_152356) promoter-TSS (NM_152356) -880 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 201-41 chrX 46898209 46898421 + 1.66667 NA intron (NR_046101, intron 1 of 3) intron (NR_046101, intron 1 of 3) 1389 NR_046101 724087 Hs.679235 NR_046101 ENSG00000204904 LINC01545 CXorf31 long intergenic non-protein coding RNA 1545 ncRNA 385.333-6 chr3 56557516 56557964 + 1.66667 NA intron (NM_001353160, intron 1 of 18) L2a|LINE|L2 565 NM_001141947 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 401.167-6 chr18 3181239 3181674 + 1.66667 NA intron (NM_019856, intron 5 of 36) intron (NM_019856, intron 5 of 36) 38512 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 261.5-2 chr1 26693157 26693461 + 1.66667 NA non-coding (NR_135804, exon 1 of 1) non-coding (NR_135804, exon 1 of 1) 822 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 187.5-5 chr1 197620618 197620734 + 1.66667 NA intron (NR_125340, intron 9 of 19) intron (NR_125340, intron 9 of 19) 154804 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 262.667-5 chr1 159630281 159630570 + 1.66667 NA Intergenic Intergenic 42599 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 235.833-6 chr12 40689882 40690152 + 1.66667 NA Intergenic Intergenic -2422 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 301.667-17 chr4 152382614 152382901 + 1.66667 NA promoter-TSS (NM_001013415) promoter-TSS (NM_001013415) -228 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 645.5-3 chr17 3845832 3846988 + 1.66667 NA promoter-TSS (NM_001114118) promoter-TSS (NM_001114118) -164 NM_001114118 55421 Hs.120963 NM_018553 ENSG00000074356 NCBP3 C17orf85|ELG|HSA277841 nuclear cap binding subunit 3 protein-coding 608.167-2 chr11 130431504 130432238 + 1.66667 NA Intergenic MER58B|DNA|hAT-Charlie -3262 NM_007037 11095 Hs.271605 NM_007037 ENSG00000134917 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif 8 protein-coding 200-41 chr8 28401985 28402175 + 1.66667 NA Intergenic CpG -15620 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 339.167-8 chr3 35761079 35761379 + 1.66667 NA intron (NM_016300, intron 18 of 19) intron (NM_016300, intron 18 of 19) 16753 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 208.333-16 chr14 63563381 63563586 + 1.66667 NA Intergenic L1M4|LINE|L1 -20088 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 241.667-9 chr14 71628472 71628620 + 1.66667 NA intron (NM_001354286, intron 8 of 24) intron (NM_001354286, intron 8 of 24) 42248 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 505.167-3 chr7 116802765 116803498 + 1.66667 NA Intergenic Intergenic -59456 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 279.667-23 chr6 98839932 98840237 + 1.66667 NA TTS (NM_005604) TTS (NM_005604) 5510 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 636.335 chr6 99152008 99152509 + 1.66667 NA Intergenic Intergenic 27649 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 943.002 chr5 39217585 39218437 + 1.66667 NA intron (NM_001349333, intron 1 of 19) intron (NM_001349333, intron 1 of 19) 1552 NM_001349333 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 496.334 chr10 58304633 58305101 + 1.66667 NA Intergenic MER113|DNA|hAT-Charlie 24812 NR_158219 112268068 Hs.586671 NR_158219 LOC112268068 - uncharacterized LOC112268068 ncRNA 479.667-3 chr12 52520915 52521564 + 1.66667 NA promoter-TSS (NM_000424) promoter-TSS (NM_000424) -845 NM_000424 3852 Hs.433845 NM_000424 ENSG00000186081 KRT5 CK5|DDD|DDD1|EBS2|K5|KRT5A keratin 5 protein-coding 185.333 chr1 112904642 112904846 + 1.66667 NA Intergenic Intergenic -18606 NR_002796 246182 Hs.647691 NR_002796 AKR7A2P1 AFARP1 aldo-keto reductase family 7 member A2 pseudogene 1 pseudo 213.334-9 chr2 119167233 119167398 + 1.66667 NA Intergenic Intergenic -8564 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 375.001-3 chr7 51187053 51187285 + 1.66667 NA intron (NM_015198, intron 4 of 12) MIR3|SINE|MIR 129640 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 293.167-11 chr3 176767405 176767714 + 1.66667 NA Intergenic L1M1|LINE|L1 49442 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 295.167-19 chr6 72651379 72651741 + 1.66667 NA intron (NR_120503, intron 2 of 3) intron (NR_120503, intron 2 of 3) 21065 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 568.167 chr4 143513095 143513894 + 1.66667 NA promoter-TSS (NM_003601) promoter-TSS (NM_003601) -208 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 421.167-6 chrX 104922265 104922836 + 1.66667 NA intron (NM_017416, intron 2 of 10) L1PA15-16|LINE|L1 298143 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 262.334-4 chr11 63177383 63177580 + 1.66667 NA intron (NM_199352, intron 6 of 8) L1MA4|LINE|L1 -33260 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 307.667-9 chr18 73473456 73473705 + 1.66667 NA Intergenic Intergenic 148639 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 388.334-11 chr8 101181051 101181414 + 1.66667 NA Intergenic L3|LINE|CR1 24441 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 231.5-32 chr7 20311400 20311673 + 1.66667 NA non-coding (NR_110117, exon 5 of 5) non-coding (NR_110117, exon 5 of 5) 14828 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 288.834-10 chr8 9622290 9622512 + 1.66667 NA intron (NM_003747, intron 3 of 26) intron (NM_003747, intron 3 of 26) 66489 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 270-26 chr3 39344428 39344730 + 1.66667 NA Intergenic L1ME3B|LINE|L1 14870 NM_005201 1237 Hs.113222 NM_005201 ENSG00000179934 CCR8 CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1 C-C motif chemokine receptor 8 protein-coding 272.5-27 chrX 135893469 135893702 + 1.66667 NA promoter-TSS (NM_001291529) promoter-TSS (NM_001291529) -131 NM_018666 55511 Hs.195292 NM_018666 ENSG00000181433 SAGE1 CT14|SAGE sarcoma antigen 1 protein-coding 509.001 chr2 143110576 143111464 + 1.66667 NA Intergenic Intergenic -18399 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 166.667-41 chr3 196296640 196296747 + 1.66667 NA intron (NM_152773, intron 3 of 4) intron (NM_152773, intron 3 of 4) -8967 NM_005017 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 225.5-18 chr3 122244960 122245205 + 1.66667 NA intron (NM_001178065, intron 1 of 6) MER2|DNA|TcMar-Tigger 60755 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 345.999-4 chr4 32073743 32074254 + 1.66667 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -51576 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 220-36 chr9 36798192 36798393 + 1.66667 NA Intergenic Intergenic 25307 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 210.833-29 chr8 80534374 80534628 + 1.66667 NA Intergenic Intergenic 48275 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 474.667 chr10 69801033 69801512 + 1.66667 NA promoter-TSS (NM_001130103) promoter-TSS (NM_001130103) -634 NM_001368895 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 223-17 chr2 18556108 18556274 + 1.66667 NA intron (NM_001199103, intron 8 of 8) (TAACAT)n|Simple_repeat|Simple_repeat 4462 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 303.333-21 chr8 70513734 70514058 + 1.66667 NA Intergenic Intergenic 42762 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 189-16 chr14 24973736 24973942 + 1.66667 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 75161 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 237.334-11 chr3 190878234 190878411 + 1.66667 NA TTS (NR_024343) TTS (NR_024343) 392 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 210.667-29 chr2 111100869 111101014 + 1.66667 NA non-coding (NR_122074, exon 4 of 4) non-coding (NR_122074, exon 4 of 4) 14647 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 407.5-5 chr12 71692028 71692407 + 1.66667 NA intron (NM_018279, intron 2 of 5) intron (NM_018279, intron 2 of 5) 6135 NM_018279 55266 Hs.644802 NM_018279 ENSG00000139291 TMEM19 - transmembrane protein 19 protein-coding 320.834-2 chr10 23313526 23313808 + 1.66667 NA intron (NM_001351306, intron 4 of 5) intron (NM_001351306, intron 4 of 5) -30290 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 277.667-8 chr14 26136948 26137288 + 1.66667 NA Intergenic Intergenic 416312 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 419.666-3 chr15 74374841 74375454 + 1.66667 NA Intergenic Intergenic -3935 NR_146881 105370894 NR_146881 LINC02255 - long intergenic non-protein coding RNA 2255 ncRNA 275.834 chr1 50885018 50885217 + 1.66667 NA intron (NM_007051, intron 1 of 18) L1M1|LINE|L1 75150 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 271.667-19 chr4 107458695 107459093 + 1.66667 NA Intergenic Intergenic 261340 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 364.667-18 chr6 50730356 50730615 + 1.66667 NA intron (NM_172238, intron 5 of 7) L3|LINE|CR1 16941 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 172.667-19 chr15 41055285 41055567 + 1.66667 NA intron (NM_017553, intron 17 of 35) intron (NM_017553, intron 17 of 35) 60820 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 360.667-8 chr22 45209346 45209732 + 1.66667 NA intron (NM_001009880, intron 2 of 9) intron (NM_001009880, intron 2 of 9) 2927 NM_015264 23313 Hs.592207 NM_015264 ENSG00000100364 KIAA0930 C22orf9|LSC3 KIAA0930 protein-coding 357.833-3 chr14 27528484 27528908 + 1.66667 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -83892 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 362.334 chr1 11241860 11242098 + 1.66667 NA intron (NM_004958, intron 9 of 57) intron (NM_004958, intron 9 of 57) 20572 NM_004958 2475 Hs.338207 NM_004958 ENSG00000198793 MTOR FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS mechanistic target of rapamycin kinase protein-coding 324.001-5 chr5 81797969 81798279 + 1.66667 NA Intergenic Intergenic -46871 NM_001256732 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 331.667-12 chr6 126733932 126734237 + 1.66667 NA Intergenic Intergenic 249453 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 324-7 chr15 100601469 100601980 + 1.66667 NA promoter-TSS (NM_024708) promoter-TSS (NM_024708) 460 NM_001352508 55180 Hs.105633 NM_018148 ENSG00000140471 LINS1 LINS|MRT27|WINS1 lines homolog 1 protein-coding 328.499 chr14 54902144 54902552 + 1.66667 NA exon (NM_001024070, exon 1 of 7) exon (NM_001024070, exon 1 of 7) 476 NM_001024024 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 236.667-17 chr3 2177213 2177406 + 1.66667 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -33068 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 392.5 chr1 186987731 186988157 + 1.66667 NA intron (NM_024420, intron 17 of 17) intron (NM_024420, intron 17 of 17) -104898 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 284.167-12 chr3 187136763 187137106 + 1.66667 NA intron (NM_052969, intron 1 of 2) AluJo|SINE|Alu 2562 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 351.501 chr12 39962721 39962959 + 1.66667 NA intron (NM_052885, intron 3 of 9) MIRc|SINE|MIR 143241 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 315.334-6 chr22 21555933 21556283 + 1.66667 NA intron (NM_001256355, intron 1 of 3) AluJb|SINE|Alu -4647 NM_001128633 150221 Hs.447643 NM_001128633 ENSG00000183246 RIMBP3C RIM-BP3.3|RIMBP3.3 RIMS binding protein 3C protein-coding 238.333-29 chr3 156166713 156166950 + 1.66667 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) 23869 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 282-8 chr11 129117562 129117799 + 1.66667 NA intron (NM_001142685, intron 4 of 21) intron (NM_001142685, intron 4 of 21) 74518 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 253.334-7 chr14 55595253 55595584 + 1.66667 NA intron (NM_004986, intron 1 of 41) intron (NM_004986, intron 1 of 41) 15211 NR_073128 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 321.334-2 chr14 61745551 61745816 + 1.66667 NA intron (NM_181054, intron 13 of 13) intron (NM_181054, intron 13 of 13) 3406 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 262-30 chrX 42886232 42886637 + 1.66667 NA Intergenic L2b|LINE|L2 -108271 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 279.834 chr1 157370165 157370779 + 1.66667 NA Intergenic Intergenic 182043 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 552.334 chr15 54038810 54039281 + 1.66667 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 26397 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 173-45 chrX 26778523 26778705 + 1.66667 NA Intergenic Intergenic 220277 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 407.001-2 chr10 34220782 34221129 + 1.66667 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -448275 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 179.667-37 chr5 35322353 35322467 + 1.66667 NA Intergenic Intergenic -91923 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 183.667-10 chr11 73165651 73165818 + 1.66667 NA Intergenic Intergenic -23416 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 222.334-4 chr3 97826076 97826251 + 1.66667 NA intron (NM_153605, intron 1 of 21) intron (NM_153605, intron 1 of 21) 4152 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 341.834-4 chr4 39459103 39459453 + 1.66667 NA promoter-TSS (NM_000661) promoter-TSS (NM_000661) 222 NM_006859 11019 Hs.550502 NM_006859 ENSG00000121897 LIAS HGCLAS|HUSSY-01|LAS|LIP1|LS|PDHLD lipoic acid synthetase protein-coding 408.333-5 chr4 47129674 47130162 + 1.66667 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 98351 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 622.667 chr20 39913081 39913683 + 1.66667 NA Intergenic L2a|LINE|L2 -91079 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 438.333-8 chr8 86868796 86869251 + 1.66667 NA intron (NM_173538, intron 1 of 10) MLT1D|LTR|ERVL-MaLR 2608 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 170.667-53 chr8 121257400 121257575 + 1.66667 NA Intergenic Intergenic -381859 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 370.334-2 chr11 88696676 88697094 + 1.66667 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 192309 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 460.167 chr19 56066165 56066855 + 1.66667 NA promoter-TSS (NR_110741) promoter-TSS (NR_110741) -174 NR_110741 101928886 Hs.434652 NR_110741 ENSG00000267522 LINC01864 - long intergenic non-protein coding RNA 1864 ncRNA 264.833-11 chr16 73408303 73408605 + 1.66667 NA intron (NR_038234, intron 1 of 2) intron (NR_038234, intron 1 of 2) 21649 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 385.833-5 chr5 110726666 110727215 + 1.66667 NA promoter-TSS (NM_001039763) promoter-TSS (NM_001039763) -269 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 277.333-31 chr7 110080340 110080667 + 1.66667 NA Intergenic Tigger1|DNA|TcMar-Tigger -120290 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 338.667-12 chr7 44352414 44352812 + 1.66667 NA Intergenic L1MD2|LINE|L1 -26982 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 457.001 chr20 31661375 31661733 + 1.66667 NA Intergenic Intergenic 23642 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 353.333-3 chr10 31147007 31147365 + 1.66667 NA Intergenic Intergenic -40697 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 360.334-7 chr7 7698344 7698700 + 1.66667 NA intron (NM_002947, intron 2 of 7) intron (NM_002947, intron 2 of 7) 20085 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 331.833-5 chr3 116059590 116059987 + 1.66667 NA intron (NM_001318915, intron 2 of 8) intron (NM_001318915, intron 2 of 8) -154662 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 517.667-4 chr4 37445436 37446175 + 1.66667 NA exon (NM_001144990, exon 7 of 7) exon (NM_001144990, exon 7 of 7) -8120 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 353-3 chr12 107695731 107695985 + 1.66667 NA intron (NM_007062, intron 5 of 14) intron (NM_007062, intron 5 of 14) 9816 NM_001317962 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 362.333-13 chr5 106529912 106530376 + 1.66667 NA Intergenic Intergenic 480870 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 336.667-3 chr12 120460032 120460245 + 1.66667 NA non-coding (NR_033684, exon 5 of 5) non-coding (NR_033684, exon 5 of 5) 9610 NM_003769 8683 Hs.706889 NM_003769 ENSG00000111786 SRSF9 SFRS9|SRp30c serine and arginine rich splicing factor 9 protein-coding 720.167 chr2 162775768 162776657 + 1.66667 NA intron (NR_110258, intron 2 of 4) intron (NR_110258, intron 2 of 4) 7276 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 269-35 chr9 98552251 98552466 + 1.66667 NA intron (NM_005458, intron 2 of 18) intron (NM_005458, intron 2 of 18) 156577 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 225.833-5 chr10 54141325 54141542 + 1.66667 NA intron (NM_001354411, intron 15 of 34) LOR1-int|LTR|ERV1 -344797 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 305.667-20 chr9 10281289 10281505 + 1.66667 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 331605 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 200-50 chr9 87273840 87274027 + 1.66667 NA Intergenic AluSx|SINE|Alu 125289 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 232.667-34 chr7 8847386 8847605 + 1.66667 NA Intergenic Intergenic 413886 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 181.5-17 chr14 52562635 52562908 + 1.66667 NA intron (NM_001353361, intron 1 of 7) L1M5|LINE|L1 9935 NM_001353361 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 206.667-59 chr9 14114647 14114857 + 1.66667 NA intron (NM_001282787, intron 8 of 10) intron (NM_001282787, intron 8 of 10) 66050 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 538.334-2 chr20 39429539 39429924 + 1.66667 NA Intergenic Intergenic -204983 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 329.834 chr10 7243970 7244466 + 1.66667 NA intron (NM_001029880, intron 8 of 20) intron (NM_001029880, intron 8 of 20) -57434 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 427-10 chr5 31518005 31518475 + 1.66667 NA intron (NM_013235, intron 5 of 34) Tigger3a|DNA|TcMar-Tigger 13853 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 191.5-45 chr6 145898511 145898648 + 1.66667 NA intron (NM_001370328, intron 27 of 31) MSTB2|LTR|ERVL-MaLR 65518 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 496.499 chr17 63919351 63919847 + 1.66667 NA promoter-TSS (NM_000515) promoter-TSS (NM_000515) -760 NM_022559 2688 Hs.655229 NM_000515 ENSG00000259384 GH1 GH|GH-N|GHB5|GHN|IGHD1A|IGHD1B|IGHD2|hGH-N growth hormone 1 protein-coding 207.834-11 chr9 37768657 37768934 + 1.66667 NA intron (NR_104612, intron 5 of 8) intron (NR_104612, intron 5 of 8) 14990 NM_001286953 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 353.667-4 chr1 241054999 241055347 + 1.66667 NA intron (NM_001350116, intron 3 of 16) MER21B|LTR|ERVL -77099 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 779.167-2 chr5 127290074 127290901 + 1.66667 NA promoter-TSS (NM_032446) promoter-TSS (NM_032446) -277 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 185.833-19 chr20 44970608 44970793 + 1.66667 NA intron (NR_147974, intron 1 of 3) intron (NR_147974, intron 1 of 3) 4188 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 220.5-29 chr21 20443730 20443996 + 1.66667 NA Intergenic LTR41B|LTR|ERVL -185178 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 296-16 chr7 78121747 78122091 + 1.66667 NA intron (NM_001301128, intron 19 of 20) L1ME3D|LINE|L1 -225323 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 286.667-13 chr2 44573161 44573371 + 1.66667 NA intron (NM_024766, intron 3 of 10) L1MB3|LINE|L1 211319 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 236.833-13 chr2 109614042 109614232 + 1.66667 NA promoter-TSS (NM_178584) promoter-TSS (NM_178584) -171 NM_001321509 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 381.167-5 chr14 27517408 27517805 + 1.66667 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -94982 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 300.334-6 chr22 28162038 28162339 + 1.66667 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -241576 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 263.334-2 chr10 89126276 89126496 + 1.66667 NA Intergenic MER63C|DNA|hAT-Blackjack -62975 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 761.333 chr18 68660124 68661187 + 1.66667 NA Intergenic Intergenic 54453 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 184.667-51 chr9 23123099 23123273 + 1.66667 NA Intergenic Intergenic 476986 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 297-10 chr17 2955154 2955416 + 1.66667 NA intron (NM_001330058, intron 3 of 24) L1MB5|LINE|L1 10610 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 442.834-2 chr2 111066705 111067104 + 1.66667 NA intron (NM_001371254, intron 17 of 18) intron (NM_001371254, intron 17 of 18) 48684 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 338.667-9 chr3 63173498 63173845 + 1.66667 NA Intergenic L1MA6|LINE|L1 70983 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 490.334 chr1 110059877 110060313 + 1.66667 NA 3' UTR (NM_006492, exon 4 of 4) 3' UTR (NM_006492, exon 4 of 4) 10577 NM_006492 257 Hs.669953 NM_006492 ENSG00000156150 ALX3 FND|FND1 ALX homeobox 3 protein-coding 419.001-2 chr2 86393548 86393883 + 1.66667 NA Intergenic ERVL-E-int|LTR|ERVL -47656 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 216.333-13 chr12 10556414 10556674 + 1.66667 NA intron (NR_146456, intron 1 of 2) intron (NR_146456, intron 1 of 2) 3165 NR_146455 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 342.167-11 chrX 56042825 56043161 + 1.66667 NA intron (NM_001324104, intron 2 of 6) L1PA11|LINE|L1 134708 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 395.833 chr17 19377932 19378391 + 1.66667 NA promoter-TSS (NM_002749) promoter-TSS (NM_002749) -248 NM_001368769 27077 Hs.309467 NM_015681 ENSG00000108641 B9D1 B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1 B9 domain containing 1 protein-coding 180.834-6 chr6 68636662 68636791 + 1.66667 NA intron (NM_001704, intron 1 of 31) intron (NM_001704, intron 1 of 31) 1444 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 167-39 chr6 168378030 168378238 + 1.66667 NA Intergenic Intergenic -58357 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 201.5-26 chr22 35358052 35358292 + 1.66667 NA Intergenic MLT1L|LTR|ERVL-MaLR -21373 NR_106717 102464824 NR_106717 ENSG00000274280 MIR6069 hsa-mir-6069 microRNA 6069 ncRNA 198.667-16 chr15 95450845 95451127 + 1.66667 NA intron (NR_027133, intron 1 of 5) intron (NR_027133, intron 1 of 5) 17893 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 272.667-3 chr1 62918665 62918860 + 1.66667 NA Intergenic Intergenic 92163 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 341.001-2 chr7 40680631 40681012 + 1.66667 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 299118 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 185.833-26 chr6 133917501 133917675 + 1.66667 NA Intergenic Intergenic 28466 NM_003206 6943 Hs.78061 NM_003206 ENSG00000118526 TCF21 POD1|bHLHa23 transcription factor 21 protein-coding 187.834-8 chr22 24710449 24710614 + 1.66667 NA Intergenic L1M4|LINE|L1 -51384 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 295.666-13 chrX 131793211 131793489 + 1.66667 NA intron (NR_026975, intron 5 of 12) intron (NR_026975, intron 5 of 12) 37293 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 206.667-60 chr9 83652640 83652820 + 1.66667 NA Intergenic MER5B|DNA|hAT-Charlie 29587 NM_001001551 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 290.834-6 chr2 115758550 115758901 + 1.66667 NA intron (NM_001321907, intron 10 of 23) L1ME2z|LINE|L1 414910 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 173.167-34 chr5 139437402 139437528 + 1.66667 NA exon (NM_152686, exon 2 of 8) exon (NM_152686, exon 2 of 8) 2060 NM_152686 202052 Hs.483537 NM_152686 ENSG00000170464 DNAJC18 - DnaJ heat shock protein family (Hsp40) member C18 protein-coding 734.5-5 chr17 75778677 75779350 + 1.66667 NA intron (NM_005324, intron 2 of 3) CpG-11668 766 NM_005324 3021 Hs.180877 NM_005324 ENSG00000132475 H3F3B H3.3B H3 histone family member 3B protein-coding 313.5-23 chr6 41005139 41005336 + 1.66667 NA intron (NR_110873, intron 1 of 5) L1MC5a|LINE|L1 18043 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 310-27 chr7 3851268 3851509 + 1.66667 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -278297 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 229.667-35 chr5 120796631 120796937 + 1.66667 NA Intergenic Intergenic 265320 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 368.833-2 chr2 147045663 147046080 + 1.66667 NA Intergenic Intergenic 458814 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 350.334-2 chr11 12377404 12377833 + 1.66667 NA promoter-TSS (NM_018222) promoter-TSS (NM_018222) 47 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 232.5-23 chr4 37705363 37705560 + 1.66667 NA Intergenic MLT1C|LTR|ERVL-MaLR -19085 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 312-2 chr10 75665453 75665784 + 1.66667 NA intron (NR_131178, intron 1 of 7) MER46C|DNA|TcMar-Tigger 18109 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 320.334-5 chr15 68936864 68937116 + 1.66667 NA intron (NM_001184780, intron 1 of 15) intron (NM_001184780, intron 1 of 15) 6465 NM_001184780 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 180.834 chr19 12977797 12978043 + 1.66667 NA Intergenic Intergenic 8302 NM_152654 199699 Hs.331981 NM_152654 ENSG00000179284 DAND5 CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1 DAN domain BMP antagonist family member 5 protein-coding 404.334-5 chr18 52339457 52339848 + 1.66667 NA promoter-TSS (NM_005215) promoter-TSS (NM_005215) -545 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 209-43 chr8 112154565 112154751 + 1.66667 NA Intergenic L1MA10|LINE|L1 -488835 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 278.834-12 chr6 65571491 65571831 + 1.66667 NA intron (NM_001292009, intron 2 of 43) L1M5|LINE|L1 8143 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 174.167-10 chr15 96428857 96429045 + 1.66667 NA Intergenic Eulor5A|DNA?|DNA? 95186 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 847.334 chr5 9498819 9499574 + 1.66667 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -12137 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 482.834-2 chr3 14969619 14970173 + 1.66667 NA intron (NM_003298, intron 1 of 14) LTR86A2|LTR|ERVL -21455 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 384.833-7 chr7 52632784 52633196 + 1.66667 NA Intergenic L1ME3B|LINE|L1 -402643 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 228-8 chr10 32980516 32980737 + 1.66667 NA Intergenic CpG -22396 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 449.334-3 chr6 50561547 50562041 + 1.66667 NA Intergenic Intergenic -151750 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 288.501 chr12 71754510 71754774 + 1.66667 NA promoter-TSS (NM_014999) promoter-TSS (NM_014999) -221 NM_014999 23011 Hs.524590 NM_014999 ENSG00000080371 RAB21 - RAB21, member RAS oncogene family protein-coding 175.333-37 chr3 29329328 29329617 + 1.66667 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 48160 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 367.667-2 chr15 33183899 33184176 + 1.66667 NA intron (NM_001277313, intron 2 of 20) HAL1b|LINE|L1 10677 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 369.167-11 chr8 72946648 72946986 + 1.66667 NA Intergenic Intergenic -62047 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 357.667-4 chr11 75920952 75921374 + 1.66667 NA intron (NM_003369, intron 6 of 14) L1ME3G|LINE|L1 105953 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 299.167-3 chr1 97903475 97903808 + 1.66667 NA intron (NM_000110, intron 1 of 22) intron (NM_000110, intron 1 of 22) 17418 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 268-22 chr19 27608169 27608508 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr -185093 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 325.167-5 chr16 73375562 73375935 + 1.66667 NA Intergenic L1MC5|LINE|L1 -11057 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 277.334-8 chr8 25482313 25482530 + 1.66667 NA intron (NM_001317906, intron 7 of 13) intron (NM_001317906, intron 7 of 13) 23188 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 312.5-13 chr3 62622542 62622833 + 1.66667 NA intron (NM_003716, intron 6 of 29) intron (NM_003716, intron 6 of 29) -249137 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 292.667-8 chr18 10389786 10390057 + 1.66667 NA Intergenic U13_|snRNA|snRNA 24449 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 358.334-2 chr2 86693336 86693631 + 1.66667 NA intron (NM_001198954, intron 1 of 7) L1ME1|LINE|L1 -26808 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 423.334 chr1 30783094 30783451 + 1.66667 NA Intergenic Intergenic -25498 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 221.5 chr1 94800815 94800980 + 1.66667 NA intron (NR_160783, intron 1 of 3) intron (NR_160783, intron 1 of 3) 19335 NR_160780 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 362-15 chr5 90865878 90866255 + 1.66667 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 307269 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 215-15 chr16 76022389 76022579 + 1.66667 NA Intergenic Intergenic -254917 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 289.334-9 chr7 11117725 11118031 + 1.66667 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 144006 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 165.833-9 chr11 3110264 3110517 + 1.66667 NA intron (NM_020896, intron 7 of 21) intron (NM_020896, intron 7 of 21) -52967 NM_139273 833 Hs.274873 NM_001751 ENSG00000110619 CARS CARS1|CYSRS|MGC:11246 cysteinyl-tRNA synthetase protein-coding 370.334-6 chr2 151051871 151052369 + 1.66667 NA Intergenic Intergenic 209743 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 229-26 chr6 55810433 55810690 + 1.66667 NA intron (NM_001329754, intron 2 of 5) intron (NM_001329754, intron 2 of 5) 65029 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 198.667-37 chr5 103056094 103056275 + 1.66667 NA Intergenic MER57A-int|LTR|ERV1 63954 NM_001317954 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 281.501-2 chr20 44128991 44129203 + 1.66667 NA intron (NM_020433, intron 2 of 5) intron (NM_020433, intron 2 of 5) 58091 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 447.168 chr8 60402603 60403139 + 1.66667 NA non-coding (NR_103854, exon 3 of 3) non-coding (NR_103854, exon 3 of 3) 10947 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 385.168 chr15 60403206 60403670 + 1.66667 NA Intergenic L1ME3G|LINE|L1 -5452 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 274-43 chr9 115577861 115578181 + 1.66667 NA Intergenic L1MC4a|LINE|L1 166218 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 200-46 chr8 114090982 114091196 + 1.66667 NA Intergenic Intergenic -654150 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 307.167-2 chr1 111345382 111345735 + 1.66667 NA Intergenic MER20B|DNA|hAT-Charlie -1002 NR_125338 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 281.334-2 chr1 186490250 186490439 + 1.66667 NA Intergenic MIRb|SINE|MIR -29230 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 295.667-19 chr8 30157735 30157960 + 1.66667 NA intron (NM_006571, intron 1 of 6) intron (NM_006571, intron 1 of 6) 1478 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 291.333-10 chr2 113231538 113231870 + 1.66667 NA intron (NM_013953, intron 7 of 9) intron (NM_013953, intron 7 of 9) -3823 NR_047570 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 274-9 chr12 74536824 74537196 + 1.66667 NA promoter-TSS (NM_001136262) promoter-TSS (NM_001136262) -825 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 188.667-28 chr20 57205644 57205764 + 1.66667 NA intron (NM_001719, intron 2 of 6) intron (NM_001719, intron 2 of 6) -7992 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 268.001 chr14 20178565 20178787 + 1.66667 NA Intergenic Intergenic -18660 NM_001005503 390439 Hs.554582 NM_001005503 ENSG00000196832 OR11G2 OR14-34 olfactory receptor family 11 subfamily G member 2 protein-coding 299.667-13 chr9 100017391 100017778 + 1.66667 NA intron (NM_015051, intron 7 of 11) intron (NM_015051, intron 7 of 11) 81416 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 608.667-4 chr6 48826784 48827401 + 1.66667 NA Intergenic Intergenic 636161 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 269.333-9 chr2 43371715 43372029 + 1.66667 NA intron (NM_001083953, intron 29 of 37) intron (NM_001083953, intron 29 of 37) 144661 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 279.333-7 chr12 100369909 100370153 + 1.66667 NA intron (NM_001145288, intron 1 of 10) Charlie8|DNA|hAT-Charlie 12957 NM_139319 246213 Hs.116871 NM_139319 ENSG00000179520 SLC17A8 DFNA25|VGLUT3 solute carrier family 17 member 8 protein-coding 234.167-4 chr10 27726916 27727111 + 1.66667 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -17602 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 213.167-23 chr5 141338401 141338768 + 1.66667 NA promoter-TSS (NM_032009) promoter-TSS (NM_032009) -176 NM_018915 56113 Hs.368160 NM_018915 ENSG00000081853 PCDHGA2 PCDH-GAMMA-A2 protocadherin gamma subfamily A, 2 protein-coding 172.333-30 chr2 58842181 58842412 + 1.66667 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 321543 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 483.001 chr4 71856344 71856690 + 1.66667 NA Intergenic MER4B-int|LTR|ERV1 -50997 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 361.667-4 chr11 114763680 114764070 + 1.66667 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? 85348 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 738.167 chr18 50819480 50820177 + 1.66667 NA intron (NM_001369508, intron 1 of 7) intron (NM_001369508, intron 1 of 7) 188 NM_001127175 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 278.501-3 chr3 123530082 123530318 + 1.66667 NA intron (NM_001329786, intron 2 of 5) intron (NM_001329786, intron 2 of 5) 54417 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 228.667-55 chrX 54409574 54409756 + 1.66667 NA Intergenic MIR|SINE|MIR -30710 NM_001346792 90121 Hs.522662 NM_058163 ENSG00000158526 TSR2 DBA14|DT1P1A10|WGG1 TSR2 ribosome maturation factor protein-coding 325-18 chr9 26722745 26723092 + 1.66667 NA Intergenic Intergenic 169884 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 504.834 chr15 78859770 78860344 + 1.66667 NA Intergenic Intergenic -12724 NM_206839 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 347.5-13 chr7 91166316 91166601 + 1.66667 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -97975 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 449.167 chr10 29141097 29141559 + 1.66667 NA Intergenic Intergenic -147742 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 173.333-26 chr4 154622830 154623027 + 1.66667 NA Intergenic Intergenic -10120 NM_000509 2266 Hs.727584 NM_000509 ENSG00000171557 FGG - fibrinogen gamma chain protein-coding 287.333-3 chr12 6151921 6152135 + 1.66667 NA Intergenic AluSg|SINE|Alu -27353 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 239.667-30 chr3 145389384 145389636 + 1.66667 NA Intergenic L1MB3|LINE|L1 679675 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 255.001-3 chr8 111618270 111618557 + 1.66667 NA Intergenic L1ME3B|LINE|L1 241774 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 318.334-9 chr5 6831665 6832005 + 1.66667 NA Intergenic MLT2D|LTR|ERVL -3914 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 272.333-7 chr12 111764630 111764914 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -2161 NM_000690 217 Hs.604551 NM_000690 ENSG00000111275 ALDH2 ALDH-E2|ALDHI|ALDM aldehyde dehydrogenase 2 family member protein-coding 367-7 chr14 72381212 72381585 + 1.66667 NA intron (NM_001370288, intron 3 of 16) L1MA5A|LINE|L1 -135422 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 306.667-19 chr4 133190425 133190694 + 1.66667 NA 3' UTR (NM_032961, exon 5 of 5) 3' UTR (NM_032961, exon 5 of 5) 41265 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 217.5-23 chr5 146812251 146812469 + 1.66667 NA intron (NM_001271899, intron 2 of 9) MIRb|SINE|MIR 66425 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 348.667-6 chr15 70347610 70347858 + 1.66667 NA Intergenic L1ME4b|LINE|L1 158194 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 292.334-6 chr21 46286363 46286556 + 1.66667 NA promoter-TSS (NM_003906) promoter-TSS (NM_003906) 117 NM_001314025 54059 Hs.474066 NM_058181 ENSG00000182362 YBEY C21orf57 ybeY metalloendoribonuclease protein-coding 394.167-11 chr7 5174298 5174747 + 1.66667 NA Intergenic Intergenic -15711 NM_001033519 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 211.667-44 chr7 93091426 93091667 + 1.66667 NA Intergenic L1M1|LINE|L1 26433 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 316.501-3 chr9 35275013 35275413 + 1.66667 NA intron (NM_006377, intron 7 of 38) MIRb|SINE|MIR -66683 NM_001371188 537.501-2 chr15 34920095 34920661 + 1.66667 NA exon (NM_014691, exon 14 of 35) exon (NM_014691, exon 14 of 35) 49364 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 517.999 chr18 72252956 72253455 + 1.66667 NA Intergenic L1ME1|LINE|L1 291137 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 298.667 chr1 10510940 10511156 + 1.66667 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 36098 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 270-38 chr8 28674413 28674714 + 1.66667 NA Intergenic ERVL-B4-int|LTR|ERVL 26901 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 207.334-5 chr2 237575111 237575346 + 1.66667 NA intron (NM_022449, intron 5 of 5) intron (NM_022449, intron 5 of 5) 8654 NM_015893 51052 Hs.247710 NM_015893 ENSG00000071677 PRLH PRH|PRRP prolactin releasing hormone protein-coding 274.333-17 chr2 161931355 161931720 + 1.66667 NA intron (NM_001354443, intron 15 of 25) intron (NM_001354443, intron 15 of 25) 142678 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 210-7 chr11 94924044 94924177 + 1.66667 NA Intergenic LTR16A1|LTR|ERVL 49446 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 290.667-23 chr8 135330128 135330350 + 1.66667 NA Intergenic Intergenic 96108 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 278.834-16 chrX 20527671 20527926 + 1.66667 NA Intergenic (CAA)n|Simple_repeat|Simple_repeat -260889 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 312.501-4 chr2 102948363 102948614 + 1.66667 NA Intergenic Intergenic 35941 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 453.334-3 chr8 125211429 125211826 + 1.66667 NA intron (NM_001349486, intron 5 of 7) L1ME4b|LINE|L1 119767 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 373.167 chr1 17236841 17237443 + 1.66667 NA intron (NM_013358, intron 11 of 15).2 intron (NM_013358, intron 11 of 15).2 -11956 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3|UHS1 peptidyl arginine deiminase 3 protein-coding 190.5-18 chr15 41484284 41484448 + 1.66667 NA TTS (NM_015138) TTS (NM_015138) -9508 NM_002220 3706 Hs.2722 NM_002220 ENSG00000137825 ITPKA IP3-3KA|IP3KA inositol-trisphosphate 3-kinase A protein-coding 437.001-3 chr5 152527746 152528051 + 1.66667 NA Intergenic Intergenic -122619 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 222.667-17 chr15 20659820 20660077 + 1.66667 NA Intergenic Plat_L3|LINE|CR1 96203 NR_027992 606 Hs.657985 NR_027992 NBEAP1 BCL8|BCL8A neurobeachin pseudogene 1 pseudo 290.001-4 chr14 61927472 61927699 + 1.66667 NA promoter-TSS (NM_001367663) promoter-TSS (NM_001367663) -110 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 336.333-8 chr3 194598964 194599440 + 1.66667 NA intron (NM_138399, intron 9 of 10) intron (NM_138399, intron 9 of 10) 14934 NR_047575 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 175.666-3 chr2 36901584 36901808 + 1.66667 NA intron (NM_003162, intron 5 of 17) intron (NM_003162, intron 5 of 17) 64840 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 269.834-4 chr8 41860204 41860590 + 1.66667 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 36344 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 506.334 chr10 68409846 68410234 + 1.66667 NA Intergenic AluSg|SINE|Alu -2746 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 270.334-8 chr18 21276570 21276883 + 1.66667 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 34484 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 397-19 chr8 79610600 79611044 + 1.66667 NA promoter-TSS (NM_001199214) promoter-TSS (NM_001199214) -295 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 351.334 chr1 168525880 168526118 + 1.66667 NA Intergenic L1MC5a|LINE|L1 17998 NM_003175 6846 Hs.458346 NM_003175 ENSG00000143185 XCL2 SCM-1b|SCM1B|SCYC2 X-C motif chemokine ligand 2 protein-coding 483.334-2 chr4 87980837 87981217 + 1.66667 NA intron (NM_001040058, intron 5 of 6) intron (NM_001040058, intron 5 of 6) 5313 NM_001040058 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 273.667-2 chr10 21341425 21341809 + 1.66667 NA intron (NR_155751, intron 4 of 4) intron (NR_155751, intron 4 of 4) 31333 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 252.167-17 chr3 133637249 133637690 + 1.66667 NA intron (NM_001363889, intron 14 of 27) intron (NM_001363889, intron 14 of 27) 24472 NM_001363889 11073 Hs.593379 NM_007027 ENSG00000163781 TOPBP1 Dpb11|TOP2BP1 DNA topoisomerase II binding protein 1 protein-coding 407.834 chr10 56298608 56299055 + 1.66667 NA Intergenic Intergenic 62428 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 163.5-37 chr5 88683692 88683873 + 1.66667 NA intron (NR_146284, intron 1 of 3) intron (NR_146284, intron 1 of 3) 1043 NR_152237 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 290.834-2 chr12 33685895 33686105 + 1.66667 NA Intergenic Intergenic -246181 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 325.834 chr1 234600689 234600928 + 1.66667 NA Intergenic Intergenic 8717 NM_001077397 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 CVID14 interferon regulatory factor 2 binding protein 2 protein-coding 255.501 chr10 57450382 57450649 + 1.66667 NA Intergenic Intergenic -145956 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 254.167-28 chr9 87647752 87647947 + 1.66667 NA intron (NM_004938, intron 14 of 25) intron (NM_004938, intron 14 of 25) -78270 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 301-23 chr5 111829634 111829844 + 1.66667 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -71521 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 418.667-5 chr3 126081659 126082199 + 1.66667 NA intron (NM_001008486, intron 1 of 10) intron (NM_001008486, intron 1 of 10) 2362 NM_001008485 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 280.001-3 chr5 134905605 134905853 + 1.66667 NA intron (NM_032151, intron 1 of 3) intron (NM_032151, intron 1 of 3) 609 NM_032151 84105 Hs.710014 NM_032151 ENSG00000132570 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding 164.834-4 chr15 70508908 70509104 + 1.66667 NA Intergenic Intergenic -3078 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 653.166 chr7 111751957 111752575 + 1.66667 NA intron (NM_001363540, intron 42 of 52) L1MC5|LINE|L1 -56239 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 264.834-8 chr4 104484531 104484747 + 1.66667 NA intron (NR_132741, intron 2 of 2) intron (NR_132741, intron 2 of 2) -6326 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 319-15 chr6 136250069 136250412 + 1.66667 NA promoter-TSS (NM_138419) promoter-TSS (NM_138419) 71 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 434.501-3 chr3 113866325 113866745 + 1.66667 NA intron (NM_017577, intron 2 of 17) L1M4a2|LINE|L1 27747 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 336-2 chr1 150954954 150955246 + 1.66667 NA intron (NM_001366417, intron 14 of 21) HAL1|LINE|L1 19735 NM_022075 29956 Hs.744017 NM_013384 ENSG00000143418 CERS2 L3|LASS2|SP260|TMSG1 ceramide synthase 2 protein-coding 404.167-4 chr11 47179312 47179667 + 1.66667 NA TTS (NR_106803) TTS (NR_106803) 248 NR_106803 102466726 NR_106803 ENSG00000275208 MIR6745 hsa-mir-6745 microRNA 6745 ncRNA 350.167-7 chr2 117113078 117113309 + 1.66667 NA Intergenic L1MDa|LINE|L1 -701498 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 403.334-7 chrX 12894047 12894507 + 1.66667 NA Intergenic Intergenic -12343 NM_016610 51311 Hs.660543 NM_016610 ENSG00000101916 TLR8 CD288 toll like receptor 8 protein-coding 210.833-8 chr11 3760441 3760660 + 1.66667 NA exon (NM_139132, exon 10 of 32) exon (NM_139132, exon 10 of 32) 36996 NR_157591 4928 Hs.524750 NM_005387 ENSG00000110713 NUP98 ADIR2|NUP196|NUP96 nucleoporin 98 protein-coding 383.334-2 chr19 33771348 33771788 + 1.66667 NA intron (NM_001127895, intron 4 of 4) intron (NM_001127895, intron 4 of 4) -25302 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 176.334-3 chr3 185524807 185524974 + 1.66667 NA intron (NM_139248, intron 4 of 9) intron (NM_139248, intron 4 of 9) -25855 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 528.334 chr19 29873265 29874057 + 1.66667 NA Intergenic CpG -49996 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 333.834-6 chr9 27573735 27574342 + 1.66667 NA promoter-TSS (NM_018325) promoter-TSS (NM_018325) -172 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 392.166-3 chr2 217650534 217650911 + 1.66667 NA intron (NR_026597, intron 1 of 12) MLT1J1|LTR|ERVL-MaLR 105871 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 239.667-24 chr2 74567237 74567445 + 1.66667 NA intron (NM_001321739, intron 7 of 10) intron (NM_001321739, intron 7 of 10) 13181 NM_001318869 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 251.334-11 chr2 207744829 207745030 + 1.66667 NA intron (NM_001330218, intron 7 of 9) L2a|LINE|L2 -9878 NR_039934 100616361 NR_039934 ENSG00000284079 MIR4775 - microRNA 4775 ncRNA 335.833-5 chr14 99272192 99272559 + 1.66667 NA promoter-TSS (NM_138576) promoter-TSS (NM_138576) -178 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 412.667-10 chr8 13520592 13520846 + 1.66667 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) -5868 NM_024767 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 210.333-34 chr8 136031874 136032087 + 1.66667 NA Intergenic Intergenic -498818 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 213.334-2 chr1 48481169 48481342 + 1.66667 NA Intergenic L1MC5|LINE|L1 -9047 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 271-19 chr21 22915554 22915958 + 1.66667 NA Intergenic Intergenic -163528 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 716.166-2 chr21 33361044 33361635 + 1.66667 NA Intergenic Intergenic 36369 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 445.833-4 chrX 58328557 58329028 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr -418159 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 187.334-4 chr2 20618038 20618260 + 1.66667 NA 3' UTR (NM_022460, exon 7 of 7) 3' UTR (NM_022460, exon 7 of 7) -25601 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 307.667-7 chr15 70267672 70267923 + 1.66667 NA Intergenic L2c|LINE|L2 -169880 NM_005078 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 340-15 chr6 102816578 102816977 + 1.66667 NA Intergenic L1MC4|LINE|L1 1417792 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 333.834-5 chr7 19001725 19001982 + 1.66667 NA 3' UTR (NM_001321877, exon 25 of 25) 3' UTR (NM_001321877, exon 25 of 25) 115783 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 408.334-2 chr18 63614527 63614931 + 1.66667 NA Intergenic Intergenic 27386 NM_001348270 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 269-8 chr12 26299124 26299451 + 1.66667 NA Intergenic Intergenic 103714 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 446.5-7 chr7 29189828 29190142 + 1.66667 NA promoter-TSS (NM_001371267) promoter-TSS (NM_001371267) 72 NM_001371267 350.667-21 chr9 121805258 121805571 + 1.66667 NA Intergenic Intergenic 62629 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 219.167-7 chr15 39578884 39579134 + 1.66667 NA Intergenic Intergenic -2070 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 297.5-14 chr2 10593720 10593943 + 1.66667 NA intron (NR_048552, intron 16 of 19) intron (NR_048552, intron 16 of 19) 96144 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 223.667-38 chr3 125039398 125039643 + 1.66667 NA intron (NM_020733, intron 1 of 16) intron (NM_020733, intron 1 of 16) 16477 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 248.334-3 chr15 26784517 26784693 + 1.66667 NA Intergenic MER33|DNA|hAT-Charlie -10842 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 368.334-6 chr2 200974696 200974975 + 1.66667 NA 3' UTR (NM_173822, exon 12 of 12) 3' UTR (NM_173822, exon 12 of 12) -11175 NM_006190 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 840.335 chr22 29154232 29155061 + 1.66667 NA intron (NM_032045, intron 9 of 9) intron (NM_032045, intron 9 of 9) -51250 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 377.001-3 chr4 55941262 55941600 + 1.66667 NA Intergenic HERV4_I-int|LTR|ERV1 -7514 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 288-25 chr6 120476122 120476414 + 1.66667 NA Intergenic L1MB1|LINE|L1 461089 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 281.334-3 chr10 43890397 43890590 + 1.66667 NA intron (NR_038268, intron 4 of 4) HAL1b|LINE|L1 -18803 NR_033846 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 225-14 chr18 73126552 73126730 + 1.66667 NA Intergenic Intergenic 137857 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 274.334-4 chr17 7280700 7281021 + 1.66667 NA promoter-TSS (NM_001042) promoter-TSS (NM_001042) -858 NM_001042 6517 Hs.380691 NM_001042 ENSG00000181856 SLC2A4 GLUT4 solute carrier family 2 member 4 protein-coding 294.001-4 chr4 105036348 105036609 + 1.66667 NA Intergenic L1MA3|LINE|L1 -109397 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 324.167-7 chr12 53453032 53453254 + 1.66667 NA intron (NM_001128912, intron 1 of 14) intron (NM_001128912, intron 1 of 14) 1041 NM_001098620 5094 Hs.546271 NM_005016 ENSG00000197111 PCBP2 HNRNPE2|HNRPE2|hnRNP-E2 poly(rC) binding protein 2 protein-coding 244.333-17 chr2 151611352 151611599 + 1.66667 NA intron (NM_001271208, intron 78 of 182) intron (NM_001271208, intron 78 of 182) 123001 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 255-9 chr10 130029287 130029614 + 1.66667 NA Intergenic Intergenic -65176 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 189.167-38 chr9 29686757 29686972 + 1.66667 NA Intergenic L1M4b|LINE|L1 -473263 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 183.5-25 chr21 31354950 31355072 + 1.66667 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -10657 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 355.999 chr12 108561869 108562354 + 1.66667 NA promoter-TSS (NM_014706) promoter-TSS (NM_014706) 648 NM_001301141 23479 Hs.615131 NM_014301 ENSG00000136003 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 402.667-2 chr10 11515336 11515845 + 1.66667 NA intron (NM_014688, intron 5 of 14) MER21B|LTR|ERVL 16690 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 437.333-2 chr2 208820119 208820705 + 1.66667 NA intron (NR_136588, intron 4 of 5) intron (NR_136588, intron 4 of 5) 277770 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 307.833-12 chr7 28628939 28629302 + 1.66667 NA intron (NM_182899, intron 4 of 9) MIR|SINE|MIR -57013 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 188-52 chr8 75448555 75448724 + 1.66667 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) 40990 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 252.667-20 chr6 35612480 35612881 + 1.66667 NA intron (NM_001145775, intron 6 of 11) THE1C|LTR|ERVL-MaLR 52109 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 302.334 chr10 66506990 66507281 + 1.66667 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -418901 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 330.333 chr12 124765391 124765672 + 1.66667 NA Intergenic Intergenic 74140 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 173.334-3 chr2 153413930 153414045 + 1.66667 NA Intergenic Intergenic 64775 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 275.667 chr1 115536945 115537203 + 1.66667 NA Intergenic MER50B|LTR|ERV1 -104896 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 441.667-6 chr5 4516974 4517289 + 1.66667 NA Intergenic Intergenic -256350 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 375-2 chr12 53729145 53729560 + 1.66667 NA Intergenic Intergenic -1900 NM_001143682 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 257.5-13 chr16 78906982 78907163 + 1.66667 NA intron (NM_001291997, intron 7 of 7) LTR8A|LTR|ERV1 693665 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 374.667-6 chr16 74274446 74274925 + 1.66667 NA Intergenic Intergenic -22129 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 240-13 chr12 66115970 66116175 + 1.66667 NA TTS (NM_032338) TTS (NM_032338) 14678 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 429.333-7 chr9 87950483 87950978 + 1.66667 NA Intergenic L1P4d|LINE|L1 -11470 NR_149022 497256 Hs.584108 NR_149022 LOC497256 - uncharacterized LOC497256 ncRNA 272.667-19 chr3 140863952 140864131 + 1.66667 NA Intergenic Intergenic -77795 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 509.001-2 chr9 12329088 12329601 + 1.66667 NA Intergenic LTR13|LTR|ERVK -364041 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 270-36 chr7 29556217 29556488 + 1.66667 NA Intergenic L1MEd|LINE|L1 -7483 NM_001329996 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 458.833-3 chr5 50791280 50791963 + 1.66667 NA intron (NM_024615, intron 10 of 25) intron (NM_024615, intron 10 of 25) 124207 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 264.667-2 chr11 93704166 93704545 + 1.66667 NA intron (NM_033395, intron 17 of 29) AluJb|SINE|Alu -17159 NR_002569 619383 Hs.660668 NR_002569 ENSG00000254911 SCARNA9 Z32|mgU2-19/30 small Cajal body-specific RNA 9 ncRNA 203.667-31 chr3 182971839 182972014 + 1.66667 NA intron (NM_001308101, intron 1 of 6) intron (NM_001308101, intron 1 of 6) 8612 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 374-2 chr11 64767661 64768122 + 1.66667 NA intron (NM_201995, intron 9 of 13) intron (NM_201995, intron 9 of 13) -7176 NM_001164716 5837 Hs.154084 NM_005609 ENSG00000068976 PYGM - glycogen phosphorylase, muscle associated protein-coding 455.334 chr11 9231939 9232321 + 1.66667 NA intron (NR_145966, intron 1 of 21) L1ME3A|LINE|L1 33196 NR_145966 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 479.334-4 chr22 20496546 20497213 + 1.66667 NA Intergenic Intergenic -1084 NR_033825 84861 Hs.517419 NM_032775 ENSG00000099910 KLHL22 KELCHL kelch like family member 22 protein-coding 533.834-2 chr21 45140238 45140931 + 1.66667 NA intron (NR_027673, intron 3 of 12) intron (NR_027673, intron 3 of 12) -11946 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 376.833-7 chr8 136558365 136559027 + 1.66667 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 27898 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 225.334 chr1 218496650 218496861 + 1.66667 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) -13340 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 207.833-3 chr11 85679409 85679614 + 1.66667 NA Intergenic Intergenic 6684 NM_152723 220388 Hs.376241 NM_152723 ENSG00000179071 CCDC89 - coiled-coil domain containing 89 protein-coding 551.667 chr11 128905609 128906378 + 1.66667 NA promoter-TSS (NM_001256088) promoter-TSS (NM_001256088) 36 NM_001369160 219833 Hs.689860 NM_145013 ENSG00000174370 C11orf45 - chromosome 11 open reading frame 45 protein-coding 410.667 chr11 68091333 68091630 + 1.66667 NA intron (NM_001277, intron 2 of 11) intron (NM_001277, intron 2 of 11) 29907 NM_001277 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 380-6 chr11 47799434 47799670 + 1.66667 NA intron (NM_015231, intron 23 of 35) intron (NM_015231, intron 23 of 35) -32211 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 262.667-10 chr12 13820640 13820859 + 1.66667 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 159607 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 191.5-6 chr10 32992938 32993099 + 1.66667 NA Intergenic Intergenic -34788 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 417.167 chr10 58414659 58415123 + 1.66667 NA Intergenic Intergenic 29481 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 200.333-18 chr18 60520684 60520825 + 1.66667 NA Intergenic L1M4|LINE|L1 -147979 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 262.667-17 chr16 22014270 22014594 + 1.66667 NA intron (NM_001164579, intron 1 of 2) intron (NM_001164579, intron 1 of 2) 6321 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 MOSMO ATTHOG|BC030336|C16orf52 modulator of smoothened protein-coding 371.001-3 chr3 122857928 122858484 + 1.66667 NA intron (NM_032839, intron 6 of 8) intron (NM_032839, intron 6 of 8) -28307 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 315.334-3 chr14 86396379 86396809 + 1.66667 NA Intergenic Intergenic 461916 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 384.167-10 chr8 30600906 30601356 + 1.66667 NA intron (NM_001348353, intron 6 of 6) intron (NM_001348353, intron 6 of 6) -37449 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 191.833-19 chr4 66880581 66880882 + 1.66667 NA Intergenic Intergenic 541269 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 218.667-21 chr20 5123853 5124144 + 1.66667 NA intron (NM_002592, intron 1 of 6) MLT1K|LTR|ERVL-MaLR 2624 NM_002592 5111 Hs.147433 NM_002592 ENSG00000132646 PCNA ATLD2 proliferating cell nuclear antigen protein-coding 250.833-10 chr2 122748731 122748970 + 1.66667 NA Intergenic Intergenic 324631 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 345.666-2 chr5 44109563 44110051 + 1.66667 NA Intergenic LTR1E|LTR|ERV1 -278925 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 362.834 chr17 19965851 19966338 + 1.66667 NA intron (NM_007202, intron 2 of 14) (ATAAC)n|Simple_repeat|Simple_repeat 11734 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 464.667-5 chr3 83171841 83172182 + 1.66667 NA Intergenic Intergenic 1185869 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 275.501 chr11 65099612 65099860 + 1.66667 NA intron (NR_073519, intron 2 of 9) AluJo|SINE|Alu 3522 NM_013265 738 Hs.277517 NM_013265 ENSG00000149823 VPS51 ANG2|ANG3|C11orf2|C11orf3|FFR VPS51 subunit of GARP complex protein-coding 238.334-23 chr9 13213290 13213504 + 1.66667 NA intron (NM_003829, intron 10 of 45) intron (NM_003829, intron 10 of 45) 66167 NM_001261406 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 257-27 chr5 97372383 97372588 + 1.66667 NA Intergenic L1PA16|LINE|L1 -132211 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 308.667-4 chr10 89566105 89566453 + 1.66667 NA Intergenic Intergenic 26548 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 259.834 chr10 15884338 15884547 + 1.66667 NA Intergenic HERV16-int|LTR|ERVL -23909 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 360.999-2 chr10 107815639 107815976 + 1.66667 NA Intergenic MIR|SINE|MIR 253486 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 275.167-6 chr11 18775633 18775813 + 1.66667 NA intron (NM_006906, intron 1 of 14) MIR3|SINE|MIR 16075 NM_006906 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 274-4 chr1 207997528 207998011 + 1.66667 NA Intergenic Intergenic -86644 NM_001773 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 267.333-3 chr1 217671671 217671921 + 1.66667 NA intron (NM_138796, intron 4 of 10) intron (NM_138796, intron 4 of 10) 40452 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 321.833 chr1 152134625 152134966 + 1.66667 NA Intergenic L1M1|LINE|L1 -19341 NM_007113 7062 Hs.432416 NM_007113 ENSG00000159450 TCHH THH|THL|TRHY|UHS3 trichohyalin protein-coding 414.667-13 chrX 107718237 107718658 + 1.66667 NA intron (NM_198057, intron 1 of 2) intron (NM_198057, intron 1 of 2) -1385 NM_004089 1831 Hs.522074 NM_004089 ENSG00000157514 TSC22D3 DIP|DSIPI|GILZ|TSC-22R TSC22 domain family member 3 protein-coding 345.667-6 chr4 34208040 34208326 + 1.66667 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 61564 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 310-30 chr9 91360689 91360933 + 1.66667 NA intron (NM_001351431, intron 1 of 10) intron (NM_001351431, intron 1 of 10) 1113 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 390.667-2 chr2 65977408 65977671 + 1.66667 NA Intergenic Intergenic 380789 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 293.667-15 chr3 70744705 70745018 + 1.66667 NA Intergenic Intergenic 320063 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 188-54 chr8 86297470 86297592 + 1.66667 NA Intergenic L1MD2|LINE|L1 -45016 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 290.333-4 chr1 190675646 190675992 + 1.66667 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 50929 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 181.833-12 chr2 77764075 77764278 + 1.66667 NA intron (NR_110288, intron 3 of 3) intron (NR_110288, intron 3 of 3) -151758 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 325.167-6 chr18 21914674 21915076 + 1.66667 NA Intergenic Intergenic -83469 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 371-11 chr5 181223152 181223547 + 1.66667 NA promoter-TSS (NR_045218) promoter-TSS (NR_045218) 68 NR_045218 90933 Hs.441488 NM_033549 ENSG00000146063 TRIM41 RINCK tripartite motif containing 41 protein-coding 505.501 chr4 46841552 46842046 + 1.66667 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 67446 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 537.667-3 chr16 57712830 57713535 + 1.66667 NA intron (NM_032269, intron 7 of 17) L1MD|LINE|L1 18376 NM_001289162 84229 Hs.513635 NM_032269 ENSG00000159625 DRC7 C16orf50|CCDC135|CFAP50|FAP50 dynein regulatory complex subunit 7 protein-coding 318-13 chr4 31546660 31546980 + 1.66667 NA intron (NR_149121, intron 1 of 2) intron (NR_149121, intron 1 of 2) 40276 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 208.333-19 chr16 1469774 1470112 + 1.66667 NA intron (NM_001287, intron 1 of 24) L1MB2|LINE|L1 5085 NM_001287 1186 Hs.459649 NM_001287 ENSG00000103249 CLCN7 CLC-7|CLC7|OPTA2|OPTB4|PPP1R63 chloride voltage-gated channel 7 protein-coding 271.834-3 chr8 78923748 78924127 + 1.66667 NA Intergenic Intergenic 86408 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 236.834-5 chr2 148735191 148735349 + 1.66667 NA intron (NM_015630, intron 2 of 13) L1ME3Cz|LINE|L1 90519 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 184.334-3 chr2 149571270 149571449 + 1.66667 NA intron (NM_015702, intron 6 of 7) intron (NM_015702, intron 6 of 7) -15999 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 230.667-22 chr5 132706272 132706692 + 1.66667 NA intron (NM_001300792, intron 9 of 17) intron (NM_001300792, intron 9 of 17) -23853 NR_134248 105379176 Hs.73917 NR_134248 LOC105379176 - uncharacterized LOC105379176 ncRNA 335-10 chr2 121641841 121642159 + 1.66667 NA intron (NM_015282, intron 1 of 38) FLAM_A|SINE|Alu 7462 NM_015282 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 198.5-35 chr5 62778690 62779393 + 1.66667 NA Intergenic Intergenic 200222 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 696.834-3 chr5 43309946 43310765 + 1.66667 NA intron (NM_001324220, intron 1 of 10) intron (NM_001324220, intron 1 of 10) 2826 NM_001324219 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 343.666-3 chr6 41450849 41451219 + 1.66667 NA Intergenic Intergenic -51410 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 189.833-12 chr3 173707550 173707744 + 1.66667 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 123213 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 353.834-5 chr2 117813061 117813374 + 1.66667 NA Intergenic Intergenic -1474 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 537.334-3 chr22 22110541 22111110 + 1.66667 NA Intergenic Intergenic -66891 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 227.667-23 chr2 84220310 84220508 + 1.66667 NA Intergenic L1M4b|LINE|L1 -70273 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 413.667-5 chr2 223692832 223693387 + 1.66667 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -90748 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 451.667-5 chr7 30478160 30478816 + 1.66667 NA intron (NM_006092, intron 1 of 13) CpG 296 NM_006092 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 314.334-6 chr16 80651486 80651912 + 1.66667 NA intron (NM_152342, intron 2 of 6) L1MC3|LINE|L1 -78891 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 273.667-17 chr6 11132618 11132922 + 1.66667 NA intron (NM_001135575, intron 1 of 1) L1MB7|LINE|L1 -21045 NM_207582 405754 Hs.631996 NM_207582 ENSG00000244476 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD member 1, envelope protein-coding 316.5-4 chr11 57458611 57459057 + 1.66667 NA Intergenic Intergenic -1694 NM_178570 349667 Hs.502618 NM_178570 ENSG00000186907 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor like 2 protein-coding 203.5-20 chr2 123299420 123299599 + 1.66667 NA Intergenic Intergenic -226028 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 522.667-3 chr6 130036494 130037416 + 1.66667 NA intron (NM_001007102, intron 2 of 21) MIRb|SINE|MIR 17311 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 312.666-8 chr4 30134437 30134682 + 1.66667 NA Intergenic L1ME3F|LINE|L1 -585810 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 414.167 chr1 22451685 22452131 + 1.66667 NA promoter-TSS (NM_001330398) promoter-TSS (NM_001330398) 57 NM_001083621 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 381 chr1 47262806 47263233 + 1.66667 NA exon (NM_001282937, exon 16 of 18) exon (NM_001282937, exon 16 of 18) -30684 NM_003189 6886 Hs.705618 NM_003189 ENSG00000162367 TAL1 SCL|TCL5|bHLHa17|tal-1 TAL bHLH transcription factor 1, erythroid differentiation factor protein-coding 234.5-9 chr12 5250071 5250258 + 1.66667 NA Intergenic Intergenic -7013 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 226-15 chr14 37909406 37909694 + 1.66667 NA Intergenic Intergenic -7426 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 362.833-11 chr8 138961294 138961730 + 1.66667 NA Intergenic MER4A1_|LTR|ERV1 -47471 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 564.833-2 chr1 181166812 181167408 + 1.66667 NA Intergenic AluJb|SINE|Alu -7374 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 182.667-7 chr1 211006752 211006878 + 1.66667 NA intron (NM_002238, intron 6 of 10) L1ME4a|LINE|L1 126559 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 398.5-4 chr14 46887189 46887444 + 1.66667 NA intron (NM_001113498, intron 10 of 16) MIR|SINE|MIR -235535 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 229-5 chr16 70578036 70578399 + 1.66667 NA TTS (NM_012426) TTS (NM_012426) -1678 NM_152456 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 474.333-3 chr3 161558144 161558870 + 1.66667 NA Intergenic Intergenic 61699 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 388.667 chr1 19704688 19704947 + 1.66667 NA intron (NM_001349112, intron 12 of 14) intron (NM_001349112, intron 12 of 14) 39942 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 528.333-3 chr16 87950320 87951067 + 1.66667 NA promoter-TSS (NM_079837) promoter-TSS (NM_079837) -741 NM_001173540 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 198.334-8 chr6 41624668 41624984 + 1.66667 NA Intergenic AluSc|SINE|Alu -12192 NM_001300804 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 324.333 chr10 121094476 121094839 + 1.66667 NA Intergenic L1PA8|LINE|L1 243295 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 296.334-10 chr4 160833992 160834299 + 1.66667 NA Intergenic Intergenic -1056361 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 249.5-23 chr6 161038404 161038687 + 1.66667 NA intron (NM_005922, intron 2 of 26) intron (NM_005922, intron 2 of 26) 46776 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 536.668 chr8 129939548 129939948 + 1.66667 NA promoter-TSS (NM_001353299) promoter-TSS (NM_001353299) 63 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 269.167-14 chr5 8457459 8457693 + 1.66667 NA promoter-TSS (NR_039984) promoter-TSS (NR_039984) -12 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 186.333-37 chr7 82692760 82692889 + 1.66667 NA Intergenic Intergenic -248868 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 260-24 chr7 23086820 23087012 + 1.66667 NA Intergenic AluJr4|SINE|Alu 18787 NR_046220 100775104 NR_046220 ENSG00000230658 KLHL7-DT KLHL7-AS1|PLATAK KLHL7 divergent transcript ncRNA 449-5 chr7 111117482 111118022 + 1.66667 NA intron (NM_001099658, intron 2 of 2) intron (NM_001099658, intron 2 of 2) 26625 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 299.334-6 chr8 113264058 113264298 + 1.66667 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 112974 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 195.833-11 chr14 54267165 54267383 + 1.66667 NA Intergenic Intergenic -129594 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 245.667-3 chr12 13640327 13640604 + 1.66667 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -263720 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 265.501 chr8 71607822 71607995 + 1.66667 NA Intergenic Intergenic -59814 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 338.333-7 chr2 151402998 151403309 + 1.66667 NA Intergenic L1MA7|LINE|L1 -6749 NM_018151 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 344.333-10 chr5 67711630 67712026 + 1.66667 NA Intergenic L1MC3|LINE|L1 -65039 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 166.333-25 chr17 49630366 49630660 + 1.66667 NA intron (NM_001007228, intron 1 of 9) intron (NM_001007228, intron 1 of 9) -3924 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 453.167-2 chr17 33049434 33050237 + 1.66667 NA intron (NM_183377, intron 3 of 9) intron (NM_183377, intron 3 of 9) 56984 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 340.666-2 chr16 67547117 67547371 + 1.66667 NA TTS (NM_001193524) TTS (NM_001193524) 9782 NM_001193524 79567 Hs.152717 NM_024519 ENSG00000039523 RIPOR1 FAM65A RHO family interacting cell polarization regulator 1 protein-coding 240.5-27 chr8 77415013 77415273 + 1.66667 NA Intergenic MIRc|SINE|MIR -35554 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 261.334-4 chr14 72533398 72533594 + 1.66667 NA intron (NM_001370288, intron 15 of 16) Tigger1|DNA|TcMar-Tigger 16676 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 169.334-2 chr15 55639837 55640012 + 1.66667 NA intron (NM_173814, intron 12 of 19) intron (NM_173814, intron 12 of 19) -50953 NM_015617 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 263.167-5 chr12 59702143 59702605 + 1.66667 NA intron (NR_073055, intron 1 of 6) (ATAG)n|Simple_repeat|Simple_repeat 13004 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 193.667-30 chr2 217653434 217653600 + 1.66667 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 103076 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 315.001-2 chr12 13088065 13088437 + 1.66667 NA intron (NM_001368007, intron 4 of 6) intron (NM_001368007, intron 4 of 6) 7424 NM_001206845 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 350.667-8 chr2 40248068 40248578 + 1.66667 NA intron (NM_001351483, intron 2 of 8) MLT1A0|LTR|ERVL-MaLR 181981 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 188.334-6 chr2 148819287 148819491 + 1.66667 NA Intergenic HSMAR2|DNA|TcMar-Mariner -55838 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 214.667-7 chr12 43767914 43768141 + 1.66667 NA intron (NM_001351339, intron 2 of 13) intron (NM_001351339, intron 2 of 13) 9083 NM_001145258 51135 Hs.138499 NM_016123 ENSG00000198001 IRAK4 IPD1|IRAK-4|NY-REN-64|REN64 interleukin 1 receptor associated kinase 4 protein-coding 405.499 chr7 100673356 100673765 + 1.66667 NA promoter-TSS (NM_005273) promoter-TSS (NM_005273) -180 NM_005273 2783 Hs.185172 NM_005273 ENSG00000172354 GNB2 - G protein subunit beta 2 protein-coding 651.667-3 chr6 139373931 139374636 + 1.66667 NA promoter-TSS (NM_001168388) promoter-TSS (NM_001168388) -70 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 519.334-2 chr18 53397563 53398014 + 1.66667 NA intron (NM_005215, intron 18 of 28) intron (NM_005215, intron 18 of 28) 160687 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 504-3 chr22 36977404 36978006 + 1.66667 NA Intergenic MER41B|LTR|ERV1 12457 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 298.001-2 chr2 208860157 208860567 + 1.66667 NA Intergenic THE1D-int|LTR|ERVL-MaLR 317720 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 210.834-6 chr19 41204420 41204563 + 1.66667 NA intron (NM_030622, intron 7 of 8) intron (NM_030622, intron 7 of 8) 11272 NM_030622 29785 Hs.98370 NM_030622 ENSG00000167600 CYP2S1 CYPIIS1 cytochrome P450 family 2 subfamily S member 1 protein-coding 475.833-4 chr17 77495099 77495616 + 1.66667 NA intron (NM_006640, intron 9 of 10) intron (NM_006640, intron 9 of 10) 20114 NM_001113495 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 294.834-4 chr5 66133670 66133948 + 1.66667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -10491 NM_001323535 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 608.834-3 chr1 182601204 182601773 + 1.66667 NA intron (NM_002928, intron 4 of 4) intron (NM_002928, intron 4 of 4) 2901 NM_002928 6004 Hs.413297 NM_002928 ENSG00000143333 RGS16 A28-RGS14|A28-RGS14P|RGS-R regulator of G protein signaling 16 protein-coding 251.167-17 chr5 59887685 59887910 + 1.66667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 5929 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 677.834-2 chr17 81868884 81869854 + 1.66667 NA exon (NM_001301243, exon 3 of 5) exon (NM_001301243, exon 3 of 5) 1628 NM_001185077 396 Hs.159161 NM_004309 ENSG00000141522 ARHGDIA GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1 Rho GDP dissociation inhibitor alpha protein-coding 428.501 chr3 123593878 123594195 + 1.66667 NA intron (NR_121654, intron 2 of 3) L1ME3B|LINE|L1 8523 NR_038266 100506826 Hs.556600 NR_038266 ENSG00000239523 MYLK-AS1 - MYLK antisense RNA 1 ncRNA 445-3 chr16 75507247 75507762 + 1.66667 NA Intergenic Intergenic -12063 NR_163480 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST carbohydrate sulfotransferase 6 protein-coding 409.334-6 chr9 91171181 91171549 + 1.66667 NA intron (NR_135306, intron 2 of 2) L1PB4|LINE|L1 52303 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 238-18 chr2 106603597 106603881 + 1.66667 NA Intergenic L1M4b|LINE|L1 116375 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 334.334-9 chr5 128398389 128398616 + 1.66667 NA intron (NM_001999, intron 8 of 64) L1MEd|LINE|L1 139743 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 189.334-10 chr4 91768178 91768291 + 1.66667 NA Intergenic L1M3|LINE|L1 509068 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 396.167-5 chr12 14845014 14845408 + 1.66667 NA Intergenic MIRb|SINE|MIR -1685 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 277-19 chr3 3532870 3533161 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -266416 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 368.334-5 chr2 35097979 35098320 + 1.66667 NA Intergenic Intergenic -373256 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 273.834-9 chrX 100510634 100510861 + 1.66667 NA Intergenic Intergenic -74189 NM_022144 64102 Hs.132957 NM_022144 ENSG00000000005 TNMD BRICD4|CHM1L|TEM tenomodulin protein-coding 266.501-2 chr2 57622681 57622883 + 1.66667 NA Intergenic Intergenic -284869 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 440.834 chr1 114502849 114503191 + 1.66667 NA intron (NM_015906, intron 1 of 19) Charlie1a|DNA|hAT-Charlie 8183 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 262.334-3 chr10 28305499 28305919 + 1.66667 NA Intergenic Intergenic -2645 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 199.167-12 chr2 30538151 30538324 + 1.66667 NA intron (NM_182551, intron 4 of 6) L1M2|LINE|L1 90991 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 186-30 chr3 87254126 87254266 + 1.66667 NA 3' UTR (NM_001244644, exon 5 of 5) 3' UTR (NM_001244644, exon 5 of 5) 22388 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 233.5-30 chr5 8988313 8988626 + 1.66667 NA Intergenic L1MA8|LINE|L1 65426 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 167.334-4 chr2 163334297 163334434 + 1.66667 NA Intergenic Intergenic 401643 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 327.666-8 chr9 8895894 8896381 + 1.66667 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 38119 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 303-14 chr3 114206077 114206315 + 1.66667 NA Intergenic MIRb|SINE|MIR -6789 NM_001282563 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 391-2 chr17 21513108 21513512 + 1.66667 NA Intergenic Intergenic 38368 NR_160801 339263 Hs.514016 NM_001113434 ENSG00000212719 LINC02693 C17orf51 long intergenic non-protein coding RNA 2693 ncRNA 223.834-13 chrX 51444643 51444827 + 1.66667 NA Intergenic L1MD|LINE|L1 37787 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 450.667-6 chr4 153643158 153643840 + 1.66667 NA intron (NR_134873, intron 2 of 2) intron (NR_134873, intron 2 of 2) 3331 NR_134873 100419170 Hs.382102 NR_134873 ENSG00000250771 LOC100419170 - toll like receptor 2 pseudogene pseudo 192.833-36 chrX 48917214 48917422 + 1.66667 NA intron (NM_006875, intron 3 of 5) intron (NM_006875, intron 3 of 5) 1706 NM_006875 11040 Hs.727148 NM_006875 ENSG00000102096 PIM2 - Pim-2 proto-oncogene, serine/threonine kinase protein-coding 296.667-19 chr5 96769864 96770139 + 1.66667 NA intron (NM_001042446, intron 24 of 26) L1MA9|LINE|L1 26399 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 210.334-7 chr22 29988310 29988644 + 1.66667 NA intron (NM_153051, intron 5 of 18) intron (NM_153051, intron 5 of 18) -18572 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 427.334-5 chr3 39541941 39542409 + 1.66667 NA Intergenic Intergenic 40109 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 391.167-3 chr10 29938845 29939225 + 1.66667 NA Intergenic L1M5|LINE|L1 120551 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 265.334-9 chr9 24126436 24126612 + 1.66667 NA Intergenic Intergenic -275923 NM_001351462 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 455.999 chr10 72125957 72126398 + 1.66667 NA intron (NM_001369103, intron 8 of 9) MIR3|SINE|MIR -37145 NM_014767 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 441.667-3 chr2 3519116 3519557 + 1.66667 NA intron (NM_018269, intron 1 of 3) CpG 195 NM_018269 55256 Hs.502773 NM_018269 ENSG00000182551 ADI1 APL1|ARD|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD acireductone dioxygenase 1 protein-coding 246-22 chr3 89391812 89391987 + 1.66667 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 284278 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 264.167-8 chr14 45450137 45450433 + 1.66667 NA Intergenic L1MA4A|LINE|L1 -197083 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 187.167-23 chr4 42404332 42404539 + 1.66667 NA Intergenic Intergenic 6947 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 282.333-11 chr5 38783198 38783534 + 1.66667 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) 62463 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 454.834 chr10 62292670 62293135 + 1.66667 NA Intergenic Intergenic -24058 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 365.833-3 chr11 102741105 102741504 + 1.66667 NA Intergenic L1M1|LINE|L1 -16350 NM_001304442 4317 Hs.161839 NM_002424 ENSG00000118113 MMP8 CLG1|HNC|MMP-8|PMNL-CL matrix metallopeptidase 8 protein-coding 273.167-19 chr9 15861323 15861612 + 1.66667 NA intron (NM_001355547, intron 22 of 24) L1MB1|LINE|L1 297489 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 289.667-15 chr21 17903260 17903450 + 1.66667 NA Intergenic Tigger16b|DNA|TcMar-Tigger -13985 NM_001204176 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 457.001-2 chr5 66170880 66171471 + 1.66667 NA intron (NM_139168, intron 10 of 12) intron (NM_139168, intron 10 of 12) 26340 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 334.333-11 chr4 81492349 81492627 + 1.66667 NA Intergenic L2a|LINE|L2 -20581 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 605.166 chr1 19881829 19882450 + 1.66667 NA promoter-TSS (NM_015207) promoter-TSS (NM_015207) -256 NM_015207 23252 Hs.374987 NM_015207 ENSG00000169914 OTUD3 DUBA4 OTU deubiquitinase 3 protein-coding 429.501 chr2 23890300 23891012 + 1.66667 NA intron (NR_125717, intron 2 of 28) MARNA|DNA|TcMar-Mariner 36467 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 721.167 chr10 101889453 101890253 + 1.66667 NA intron (NM_024541, intron 23 of 25) intron (NM_024541, intron 23 of 25) -45933 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 323.667-7 chr10 57851229 57851681 + 1.66667 NA Intergenic L1M5|LINE|L1 416439 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 452.167-4 chr2 37877260 37878077 + 1.66667 NA Intergenic Intergenic -1805 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 469.334-3 chr3 83052582 83053134 + 1.66667 NA Intergenic Intergenic 1066716 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 326.999-2 chr3 21141312 21141687 + 1.66667 NA Intergenic Intergenic -264227 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 312.667-4 chr10 32326522 32326787 + 1.66667 NA intron (NM_001282391, intron 1 of 13) MLT1I-int|LTR|ERVL-MaLR 20504 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 342.168 chr12 14208058 14208343 + 1.66667 NA Intergenic LTR108a_Mam|LTR|ERVL -157432 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 263.334-6 chr2 24577255 24577472 + 1.66667 NA intron (NM_001362955, intron 3 of 23) Kanga11a|DNA|TcMar-Tc2 -7114 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 390-2 chr10 97266236 97266544 + 1.66667 NA intron (NM_032900, intron 1 of 11) intron (NM_032900, intron 1 of 11) 4267 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 436.167-8 chr7 32501573 32502105 + 1.66667 NA intron (NM_015060, intron 1 of 15) intron (NM_015060, intron 1 of 15) 6350 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 228.667-12 chr14 23829112 23829316 + 1.66667 NA Intergenic Intergenic -124556 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 262.334-6 chr12 25814298 25814683 + 1.66667 NA Intergenic MER5A|DNA|hAT-Charlie 59589 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 259-42 chr8 93573589 93573869 + 1.66667 NA intron (NR_033858, intron 5 of 10) (ATAT)n|Simple_repeat|Simple_repeat 126704 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 499.333-2 chr17 64438513 64439060 + 1.66667 NA Intergenic AluSg|SINE|Alu -10329 NM_001291316 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 249.834-8 chr6 35047066 35047273 + 1.66667 NA intron (NM_015245, intron 11 of 23) intron (NM_015245, intron 11 of 23) 94170 NM_001366323 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 356.834-2 chr16 68589896 68590125 + 1.66667 NA Intergenic MIR|SINE|MIR 50719 NM_133458 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 378.334-5 chr2 12106478 12106908 + 1.66667 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) -92437 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 364.667-13 chr3 79517243 79517471 + 1.66667 NA intron (NM_002941, intron 2 of 30) L2|LINE|L2 9470 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 198.333-20 chr15 86828178 86828370 + 1.66667 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -104606 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 227.334 chr1 22823514 22823941 + 1.66667 NA intron (NM_004442, intron 3 of 15) MIR|SINE|MIR 39499 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 192.333-10 chr12 33601722 33601896 + 1.66667 NA Intergenic L2c|LINE|L2 -161990 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 674.333-2 chr1 197519613 197520333 + 1.66667 NA intron (NR_125340, intron 17 of 19) intron (NR_125340, intron 17 of 19) 251721 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 246.5-26 chr4 56354615 56354799 + 1.66667 NA exon (NM_181806, exon 7 of 15) exon (NM_181806, exon 7 of 15) 32784 NM_001323899 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 456.834-3 chr8 10280129 10280619 + 1.66667 NA intron (NM_001199729, intron 4 of 6) intron (NM_001199729, intron 4 of 6) 184723 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 256.5-11 chr14 73027128 73027512 + 1.66667 NA promoter-TSS (NM_001281734) promoter-TSS (NM_001281734) -214 NM_001281734 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 270.667-17 chr4 120480315 120480611 + 1.66667 NA Intergenic Intergenic -413615 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 294.667-11 chr13 23003791 23004061 + 1.66667 NA Intergenic Intergenic -87557 NR_138043 100996930 Hs.380803 NR_138043 LINC00621 - long intergenic non-protein coding RNA 621 ncRNA 370.834-6 chr7 80696294 80696781 + 1.66667 NA Intergenic L1M1|LINE|L1 49884 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 256.333-2 chr1 166645655 166645940 + 1.66667 NA Intergenic L1MA4A|LINE|L1 41881 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 403.167-2 chr17 80454790 80455324 + 1.66667 NA Intergenic CpG 21550 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 223.834-2 chr1 246610372 246610569 + 1.66667 NA intron (NM_152609, intron 2 of 10) L1MB4|LINE|L1 44014 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 367.667-10 chr8 102369052 102369438 + 1.66667 NA intron (NM_001282873, intron 1 of 58) Charlie1a|DNA|hAT-Charlie 43444 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 330.333-2 chr14 60562800 60563233 + 1.66667 NA Intergenic Intergenic 53870 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 245-29 chr4 112008695 112008999 + 1.66667 NA Intergenic MER58A|DNA|hAT-Charlie -136607 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 433.334 chr1 220216040 220216443 + 1.66667 NA intron (NM_012414, intron 2 of 34) LTR84a|LTR|ERVL -15565 NR_002994 677818 Hs.730572 NR_002994 ENSG00000222370 SNORA36B ACA36b small nucleolar RNA, H/ACA box 36B snoRNA 231.167-6 chr10 79022124 79022329 + 1.66667 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 45222 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 163.333-12 chr11 67162194 67162357 + 1.66667 NA intron (NR_027473, intron 2 of 20) intron (NR_027473, intron 2 of 20) 43012 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 190.334-3 chr17 61000903 61001092 + 1.66667 NA intron (NM_001330413, intron 15 of 25) intron (NM_001330413, intron 15 of 25) 323146 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 309.167-6 chr13 31045221 31045913 + 1.66667 NA Intergenic MER105|DNA|hAT-Charlie 112911 NR_148425 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 213.167-26 chr7 31756213 31756433 + 1.66667 NA intron (NM_001191059, intron 18 of 18) L1MC3|LINE|L1 69108 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 270.5-26 chr4 23334450 23334725 + 1.66667 NA Intergenic Intergenic 546705 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 353.334-4 chr19 29354673 29355166 + 1.66667 NA intron (NR_040029, intron 9 of 9) L1M4|LINE|L1 -141768 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 202.333-33 chr7 95527411 95527747 + 1.66667 NA intron (NM_145872, intron 2 of 2) intron (NM_145872, intron 2 of 2) 41636 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 369-11 chr6 138465282 138465670 + 1.66667 NA intron (NM_020464, intron 3 of 6) intron (NM_020464, intron 3 of 6) -30182 NR_036099 100423001 NR_036099 ENSG00000266555 MIR3145 mir-3145 microRNA 3145 ncRNA 624.334-3 chr2 152036625 152037511 + 1.66667 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 61695 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 379.666-3 chr3 96728624 96728987 + 1.66667 NA Intergenic Intergenic -85789 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 271.5-40 chr7 117119675 117119897 + 1.66667 NA intron (NR_161419, intron 3 of 15) intron (NR_161419, intron 3 of 15) 25806 NR_002331 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 1102 chr10 93482296 93483156 + 1.66667 NA promoter-TSS (NM_133337) promoter-TSS (NM_133337) -392 NM_013451 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 412-6 chr7 113755091 113755704 + 1.66667 NA Intergenic L1MD3|LINE|L1 163612 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 238.334-14 chr3 191585338 191585521 + 1.66667 NA intron (NR_120606, intron 6 of 6) L1MA10|LINE|L1 124266 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 366.834-4 chr5 36507307 36507762 + 1.66667 NA Intergenic Intergenic -98821 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 420.333-4 chr7 92698222 92698771 + 1.66667 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) -108106 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 352-14 chr8 78623453 78623772 + 1.66667 NA Intergenic L1MC5|LINE|L1 -42477 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 297-20 chr4 34392025 34392235 + 1.66667 NA Intergenic Intergenic -122383 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 616.001 chr5 15995613 15996253 + 1.66667 NA Intergenic Intergenic 60751 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 417.834 chr12 106841382 106841938 + 1.66667 NA intron (NR_147137, intron 4 of 10) intron (NR_147137, intron 4 of 10) -66829 NR_040246 100287944 Hs.742087 NR_040246 ENSG00000257545 LOC100287944 - uncharacterized LOC100287944 ncRNA 227.334-13 chr21 20307595 20307959 + 1.66667 NA Intergenic Intergenic -49092 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 184.167-21 chr2 155453346 155453527 + 1.66667 NA Intergenic Intergenic 754741 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 216.667-38 chr5 20508160 20508329 + 1.66667 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 67469 NM_001349562 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 250.667-15 chr16 88922637 88922828 + 1.66667 NA intron (NM_005187, intron 1 of 11) intron (NM_005187, intron 1 of 11) -17305 NM_001290330 100129697 Hs.689377 NM_001290330 LOC100129697 - uncharacterized LOC100129697 protein-coding 299.666-5 chr4 90518157 90518560 + 1.66667 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 283327 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 318.334-2 chr1 59527218 59527447 + 1.66667 NA intron (NM_001278224, intron 1 of 9) intron (NM_001278224, intron 1 of 9) 11702 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 239.167-10 chr12 25894969 25895233 + 1.66667 NA Intergenic L2c|LINE|L2 -21022 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 515.833-2 chr21 23968846 23969199 + 1.66667 NA Intergenic HERVL18-int|LTR|ERVL 352355 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 215-24 chr21 26314606 26314842 + 1.66667 NA Intergenic Intergenic -78911 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 194.834-12 chr8 89836334 89836572 + 1.66667 NA Intergenic AluSx|SINE|Alu -65415 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 320.834-11 chr8 78358839 78359197 + 1.66667 NA Intergenic L1MCa|LINE|L1 -157322 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 318.667 chr1 70942347 70942660 + 1.66667 NA intron (NR_028293, intron 2 of 4) L2c|LINE|L2 -104003 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 234.834-7 chr4 74914835 74914975 + 1.66667 NA Intergenic L1PA7|LINE|L1 -18211 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 303.334-11 chr4 32587476 32587766 + 1.66667 NA Intergenic L1ME3A|LINE|L1 236583 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 413-10 chr5 35939951 35940395 + 1.66667 NA TTS (NR_104630) TTS (NR_104630) 1372 NR_104630 100506406 Hs.116864 NR_104630 ENSG00000249748 LOC100506406 - uncharacterized LOC100506406 ncRNA 327.167-7 chr5 29924460 29924687 + 1.66667 NA Intergenic Intergenic 44013 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 179-23 chr20 44552924 44553151 + 1.66667 NA intron (NM_007066, intron 1 of 3) intron (NM_007066, intron 1 of 3) 21162 NM_007066 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 349.667-6 chr18 63311970 63312305 + 1.66667 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 7243 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 387.834 chr1 186147496 186148106 + 1.66667 NA intron (NM_031935, intron 93 of 106) Tigger1|DNA|TcMar-Tigger -148472 NM_005807 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 255.167-3 chr1 111015491 111015778 + 1.66667 NA Intergenic L1MA5A|LINE|L1 -51690 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 184.167-25 chr21 21905028 21905202 + 1.66667 NA Intergenic Intergenic 158130 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 293.667-5 chr12 91407003 91407284 + 1.66667 NA Intergenic Intergenic -224326 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 367.5 chr1 226197134 226197420 + 1.66667 NA Intergenic Intergenic -10536 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 287.334-6 chr2 177213264 177213596 + 1.66667 NA TTS (NR_039646) TTS (NR_039646) 636 NR_138470 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 478.167-5 chr22 26668928 26669536 + 1.66667 NA non-coding (NR_003491, exon 5 of 5) non-coding (NR_003491, exon 5 of 5) -3611 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 391.501-3 chr2 82224787 82225155 + 1.66667 NA Intergenic Intergenic -631832 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 215.667-32 chr3 185680202 185680471 + 1.66667 NA intron (NR_138486, intron 7 of 15) L1MB2|LINE|L1 -32916 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 277.834-4 chr6 132820676 132821248 + 1.66667 NA Intergenic Intergenic 3743 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 587.834 chr10 13302545 13303478 + 1.66667 NA Intergenic Intergenic -2881 NM_001323082 5264 Hs.498732 NM_006214 ENSG00000107537 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 261.5-9 chr10 15394320 15394677 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -23209 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 579.668 chr14 30078951 30079325 + 1.66667 NA Intergenic Intergenic -151291 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 255.333-28 chr8 115076652 115076943 + 1.66667 NA Intergenic Intergenic 591216 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 301-17 chr3 182162698 182162939 + 1.66667 NA Intergenic Intergenic 210454 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 395.167-3 chr12 31368897 31369410 + 1.66667 NA non-coding (NR_146469, exon 1 of 2) non-coding (NR_146469, exon 1 of 2) 148 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 311.667-12 chr2 102006200 102006395 + 1.66667 NA intron (NR_048564, intron 1 of 8) intron (NR_048564, intron 1 of 8) 7336 NR_048564 7850 Hs.25333 NM_004633 ENSG00000115590 IL1R2 CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB interleukin 1 receptor type 2 protein-coding 207-6 chr10 91962760 91962992 + 1.66667 NA intron (NM_003972, intron 12 of 37) intron (NM_003972, intron 12 of 37) 39106 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 245.501-2 chr8 80640866 80641045 + 1.66667 NA 3' UTR (NM_001367783, exon 9 of 9) 3' UTR (NM_001367783, exon 9 of 9) 154729 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 434.334-2 chr19 55166595 55167168 + 1.66667 NA promoter-TSS (NM_001256714) promoter-TSS (NM_001256714) -159 NM_178837 352909 Hs.351582 NM_178837 ENSG00000167646 DNAAF3 C19orf51|CILD2|DAB1|PCD|PF22 dynein axonemal assembly factor 3 protein-coding 218.5-10 chr11 75579914 75580206 + 1.66667 NA Intergenic ERVL-E-int|LTR|ERVL -3136 NR_145823 105369391 Hs.689687 NR_145823 ENSG00000255326 LOC105369391 - uncharacterized LOC105369391 ncRNA 491-11 chr5 156822962 156823345 + 1.66667 NA Intergenic Intergenic -27142 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 408.5-2 chr17 50635921 50636334 + 1.66667 NA intron (NM_003786, intron 1 of 30) intron (NM_003786, intron 1 of 30) 1246 NM_001144070 8714 Hs.463421 NM_003786 ENSG00000108846 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP binding cassette subfamily C member 3 protein-coding 492.001 chr19 55503884 55504420 + 1.66667 NA exon (NM_001195267, exon 13 of 13) exon (NM_001195267, exon 13 of 13) 15716 NM_001144950 284297 Hs.554182 NM_182571 ENSG00000179954 SSC5D S5D-SRCRB scavenger receptor cysteine rich family member with 5 domains protein-coding 192-26 chr3 182587475 182587663 + 1.66667 NA Intergenic L1MB7|LINE|L1 -80445 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 417.167-9 chr8 120799824 120800411 + 1.66667 NA intron (NM_021021, intron 1 of 6) MER119|DNA|hAT-Charlie 11929 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 169.167-8 chr13 78956368 78956517 + 1.66667 NA Intergenic Intergenic -116392 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 168-52 chr8 129503086 129503346 + 1.66667 NA intron (NR_130917, intron 1 of 3) L1MDa|LINE|L1 -19074 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 296.334-6 chr15 100472479 100472751 + 1.66667 NA intron (NM_001290341, intron 11 of 13) intron (NM_001290341, intron 11 of 13) 71671 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 373.333-10 chr5 36305555 36305969 + 1.66667 NA Intergenic Intergenic -3860 NM_145000 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 365-4 chr10 60441540 60441950 + 1.66667 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -51870 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 325.333-9 chr22 25934007 25934308 + 1.66667 NA intron (NM_001318245, intron 34 of 43) L1M5|LINE|L1 191969 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 193.667-49 chr7 5578243 5578399 + 1.66667 NA Intergenic AluSx|SINE|Alu -14495 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 255.667-13 chr6 27548865 27549102 + 1.66667 NA Intergenic Intergenic -75865 NM_007149 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 661.333 chr7 129664198 129665207 + 1.66667 NA intron (NM_001293164, intron 2 of 9) intron (NM_001293164, intron 2 of 9) 34624 NM_001040110 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 241.333-18 chr2 94970650 94970834 + 1.66667 NA Intergenic Intergenic -23400 NR_037597 442028 Hs.611545 NR_037597 ENSG00000259848 LOC442028 - uncharacterized LOC442028 ncRNA 325 chr10 80847105 80847487 + 1.66667 NA Intergenic LTR49-int|LTR|ERV1 197499 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 512.501 chr2 121857106 121857515 + 1.66667 NA Intergenic MIRb|SINE|MIR 101659 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 179-25 chr21 31476695 31476855 + 1.66667 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 82312 NM_003253 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 234.5-6 chr1 160428355 160428750 + 1.66667 NA 3' UTR (NM_020335, exon 8 of 8) 3' UTR (NM_020335, exon 8 of 8) 27988 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 192.5-22 chr20 6459621 6459781 + 1.66667 NA intron (NR_109953, intron 2 of 3) L1PB1|LINE|L1 32969 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 415.334-9 chr3 79362407 79362730 + 1.66667 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -49159 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 256.001 chr14 46665429 46665650 + 1.66667 NA Intergenic Intergenic -13758 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 217.5-20 chr5 43724293 43724482 + 1.66667 NA Intergenic Tigger1|DNA|TcMar-Tigger -121157 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 433.5-5 chr10 43813124 43813418 + 1.66667 NA Intergenic Intergenic -22854 NR_002726 10151 Hs.632956 NR_002726 HNRNPA3P1 D10S102|FBRNP|HNRPA3|HNRPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudo 276.167-13 chr22 40383520 40383691 + 1.66667 NA intron (NR_146415, intron 1 of 20) L2a|LINE|L2 13011 NM_001350042 27352 Hs.474914 NM_015705 ENSG00000100359 SGSM3 CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP small G protein signaling modulator 3 protein-coding 498.167 chr5 95962004 95962856 + 1.66667 NA promoter-TSS (NM_012081) promoter-TSS (NM_012081) 429 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 212.667-36 chr3 149940303 149940532 + 1.66667 NA intron (NM_183383, intron 7 of 8) L1MCa|LINE|L1 30478 NM_053024 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 307.001-2 chr21 19721683 19721931 + 1.66667 NA Intergenic Intergenic 177948 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 309.333-13 chr3 128584132 128584585 + 1.66667 NA Intergenic Intergenic -8272 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 221.5-12 chr19 44213970 44214230 + 1.66667 NA intron (NM_001289172, intron 2 of 3) MER33|DNA|hAT-Charlie 1568 NM_182490 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 407.333 chr11 93908685 93909054 + 1.66667 NA Intergenic MLT2D|LTR|ERVL -58251 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 688.333-4 chr4 166165568 166166330 + 1.66667 NA Intergenic Intergenic 292712 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 274-2 chr1 166468380 166468698 + 1.66667 NA Intergenic Intergenic 21500 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 420.168 chr10 84474011 84474331 + 1.66667 NA intron (NM_018999, intron 8 of 10) MIRc|SINE|MIR 49002 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 268.667-22 chr4 145616868 145617124 + 1.66667 NA Intergenic Intergenic -2389 NM_172250 166785 Hs.452864 NM_172250 ENSG00000151611 MMAA cblA metabolism of cobalamin associated A protein-coding 311.667-21 chr8 90570679 90570907 + 1.66667 NA Intergenic Intergenic 35270 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 179.5-36 chr4 141711385 141711644 + 1.66667 NA intron (NM_172175, intron 3 of 9) L2a|LINE|L2 74931 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 361.667-12 chr3 112531205 112531547 + 1.66667 NA Intergenic Charlie15b|DNA|hAT-Charlie -29944 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 213-6 chr10 76071295 76071459 + 1.66667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 288616 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 257.333-12 chr17 82365002 82365332 + 1.66667 NA Intergenic Intergenic 5920 NM_207459 400629 Hs.231897 NM_207459 ENSG00000182459 TEX19 - testis expressed 19 protein-coding 445.001-3 chr2 202529754 202530308 + 1.66667 NA intron (NM_001204, intron 7 of 12) intron (NM_001204, intron 7 of 12) -104938 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 263.5-5 chr12 118713976 118714234 + 1.66667 NA Intergenic Intergenic 47574 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 217.334-9 chr4 45214475 45214754 + 1.66667 NA Intergenic Intergenic -487980 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 279.833-12 chr5 175378541 175378872 + 1.66667 NA Intergenic Intergenic 65476 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 228.167-4 chr10 94358401 94358661 + 1.66667 NA intron (NM_022451, intron 2 of 20) MER20B|DNA|hAT-Charlie 4408 NM_022451 64318 Hs.74899 NM_022451 ENSG00000173145 NOC3L AD24|C10orf117|FAD24 NOC3 like DNA replication regulator protein-coding 366.334-10 chr4 185097811 185098132 + 1.66667 NA intron (NR_147059, intron 8 of 8) A-rich|Low_complexity|Low_complexity -45295 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 235.167-9 chr11 39280119 39280379 + 1.66667 NA Intergenic LTR57-int|LTR|ERVL 631391 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 181.834-5 chr10 93686112 93686362 + 1.66667 NA intron (NM_145246, intron 8 of 13) intron (NM_145246, intron 8 of 13) 16335 NM_001347715 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 280.501-5 chr22 37253044 37253212 + 1.66667 NA Intergenic MLT1J|LTR|ERVL-MaLR -8859 NM_002872 5880 Hs.517601 NM_002872 ENSG00000128340 RAC2 EN-7|Gx|HSPC022|p21-Rac2 Rac family small GTPase 2 protein-coding 269-5 chr10 82596124 82596365 + 1.66667 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -363324 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 496.667-4 chr4 153785606 153786040 + 1.66667 NA intron (NM_003013, intron 2 of 2) intron (NM_003013, intron 2 of 2) 3260 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 494.667-3 chr2 194260488 194260803 + 1.66667 NA Intergenic L1MB1|LINE|L1 -83624 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 322.5-20 chr4 30287797 30288095 + 1.66667 NA Intergenic MLT1B|LTR|ERVL-MaLR -432423 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 336.667-4 chr14 22102072 22102374 + 1.66667 NA Intergenic Intergenic 330530 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 502.334 chr11 88484560 88485007 + 1.66667 NA Intergenic L1P4d|LINE|L1 -19793 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 288.334-10 chr5 64613588 64613901 + 1.66667 NA Intergenic L1ME4a|LINE|L1 38094 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 164-36 chr2 119759678 119759799 + 1.66667 NA promoter-TSS (NM_002830) promoter-TSS (NM_002830) -184 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 462.001-2 chr13 25375954 25376532 + 1.66667 NA intron (NM_016529, intron 1 of 36) intron (NM_016529, intron 1 of 36) 4269 NM_016529 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 276-18 chr3 124852410 124852637 + 1.66667 NA intron (NM_001354766, intron 3 of 13) intron (NM_001354766, intron 3 of 13) 34842 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 362-12 chr17 74984400 74984796 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR -3034 NM_014603 30850 Hs.78358 NM_014603 ENSG00000109089 CDR2L HUMPPA cerebellar degeneration related protein 2 like protein-coding 268.334-9 chr5 120497926 120498175 + 1.66667 NA intron (NM_016644, intron 2 of 2) L1MD1|LINE|L1 32419 NM_001308087 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 371-15 chr8 95890513 95890798 + 1.66667 NA Intergenic Intergenic 57693 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 530.501-2 chr3 132716102 132716626 + 1.66667 NA intron (NR_037804, intron 4 of 44) intron (NR_037804, intron 4 of 44) -5386 NR_152743 348808 Hs.586111 NR_002811 ENSG00000248724 NPHP3-AS1 NCRNA00119 NPHP3 antisense RNA 1 ncRNA 251-29 chr6 18769735 18769924 + 1.66667 NA Intergenic L1ME1|LINE|L1 198045 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 284.167-2 chr1 82526469 82526715 + 1.66667 NA Intergenic Intergenic -376591 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 258.333-12 chr4 13559492 13559744 + 1.66667 NA Intergenic Intergenic -11794 NR_015450 285548 Hs.529284 NR_015450 LINC01096 - long intergenic non-protein coding RNA 1096 ncRNA 274.667-7 chr12 89731804 89732008 + 1.66667 NA Intergenic Intergenic -22540 NM_001366520 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 342.333-6 chr2 50173750 50174070 + 1.66667 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 173844 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 268-5 chr1 189882919 189883172 + 1.66667 NA Intergenic AluJb|SINE|Alu 592965 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 293.667-9 chr17 62168151 62168393 + 1.66667 NA Intergenic Intergenic -102994 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 675.667-3 chr19 29759833 29760553 + 1.66667 NA Intergenic Intergenic -44404 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 229.167-10 chr14 65270581 65270832 + 1.66667 NA Intergenic Intergenic -48359 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 293-2 chr1 165404225 165404497 + 1.66667 NA intron (NM_001256570, intron 10 of 10) intron (NM_001256570, intron 10 of 10) 20623 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 253.834 chr1 37472129 37472688 + 1.66667 NA intron (NR_038842, intron 1 of 2) intron (NR_038842, intron 1 of 2) 2035 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 269.667-12 chr2 44192770 44193073 + 1.66667 NA intron (NM_177969, intron 1 of 4) L1MA7|LINE|L1 24046 NM_177968 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 426-10 chr3 93841267 93841830 + 1.66667 NA Intergenic AluSg|SINE|Alu 132533 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 192.5-16 chr18 72238407 72238541 + 1.66667 NA Intergenic HAL1b|LINE|L1 305868 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 305.667-13 chr5 120896961 120897324 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR 365678 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 203.834-3 chr12 97598279 97598492 + 1.66667 NA Intergenic Intergenic 34573 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 283.334 chr1 42816091 42816315 + 1.66667 NA promoter-TSS (NM_001017922) promoter-TSS (NM_001017922) -919 NM_001017922 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 222.5-9 chr10 53599201 53599429 + 1.66667 NA Intergenic LTR34|LTR|ERV1 -827615 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 605.166-2 chr3 189268011 189268761 + 1.66667 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -27792 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 404.5-7 chr22 38724749 38725628 + 1.66667 NA intron (NM_004286, intron 6 of 11) intron (NM_004286, intron 6 of 11) 19244 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 471.667-5 chr8 52787477 52787904 + 1.66667 NA Intergenic Intergenic -73224 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 292-27 chr9 37679199 37679504 + 1.66667 NA intron (NM_001371223, intron 1 of 15) intron (NM_001371223, intron 1 of 15) 11342 NM_001371223 347.001-2 chr22 30424069 30424395 + 1.66667 NA 3' UTR (NM_012429, exon 12 of 12) 3' UTR (NM_012429, exon 12 of 12) -1536 NM_016498 51537 Hs.713636 NM_016498 ENSG00000242114 MTFP1 HSPC242|MTP18 mitochondrial fission process 1 protein-coding 298.667-11 chr2 107607922 107608117 + 1.66667 NA Intergenic MER51B|LTR|ERV1 78600 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 680.334-3 chr8 78854223 78855022 + 1.66667 NA Intergenic Intergenic 17093 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 404.167-7 chr5 21766176 21766566 + 1.66667 NA intron (NM_004061, intron 11 of 14) intron (NM_004061, intron 11 of 14) -118083 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 333.333-11 chr8 108325622 108325844 + 1.66667 NA Intergenic MLT1K-int|LTR|ERVL-MaLR -77016 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 231.167-18 chr2 189007500 189007804 + 1.66667 NA intron (NM_000090, intron 45 of 50) intron (NM_000090, intron 45 of 50) 12022 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 369.834-2 chr6 132188569 132188884 + 1.66667 NA Intergenic L1ME4a|LINE|L1 54748 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 195.334-2 chr11 28067110 28067271 + 1.66667 NA intron (NM_031217, intron 11 of 16) intron (NM_031217, intron 11 of 16) 10375 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 259.334-6 chr7 10023054 10023245 + 1.66667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 388879 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 222.833-8 chr14 53896137 53896376 + 1.66667 NA Intergenic Intergenic 52228 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 295-22 chr5 141407631 141407871 + 1.66667 NA promoter-TSS (NM_032100) promoter-TSS (NM_032100) -452 NM_032100 56100 Hs.368160 NM_018926 ENSG00000253305 PCDHGB6 PCDH-GAMMA-B6 protocadherin gamma subfamily B, 6 protein-coding 407.167-11 chr9 24245936 24246543 + 1.66667 NA Intergenic MIR|SINE|MIR 299437 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 198.5-36 chr5 81718231 81718474 + 1.66667 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 32901 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 195.5 chr1 48048180 48048324 + 1.66667 NA Intergenic L2b|LINE|L2 -50867 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 176-8 chr10 98978228 98978585 + 1.66667 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -53838 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 228.667-43 chr5 155103412 155103615 + 1.66667 NA Intergenic Intergenic 89758 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 218.667-5 chr12 46503323 46503499 + 1.66667 NA intron (NR_125380, intron 3 of 3) L1M3d|LINE|L1 119304 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 467.834-5 chrX 18984644 18985298 + 1.66667 NA promoter-TSS (NM_000292) promoter-TSS (NM_000292) -857 NM_000292 5256 Hs.54941 NM_000292 ENSG00000044446 PHKA2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 phosphorylase kinase regulatory subunit alpha 2 protein-coding 319.334-7 chr17 61806195 61806450 + 1.66667 NA intron (NM_032043, intron 7 of 19) intron (NM_032043, intron 7 of 19) 57237 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 235.001-5 chr2 187549554 187549779 + 1.66667 NA intron (NM_001329239, intron 1 of 9) intron (NM_001329239, intron 1 of 9) 4769 NM_001329239 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 695.667-2 chr4 120155690 120156535 + 1.66667 NA Intergenic Intergenic -89264 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 447.001 chr3 86685642 86686039 + 1.66667 NA Intergenic L1MD|LINE|L1 203897 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 332.834 chr11 102287735 102288231 + 1.66667 NA Intergenic L2a|LINE|L2 -29501 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 437-11 chr7 27165711 27166153 + 1.66667 NA promoter-TSS (NM_152739) promoter-TSS (NM_152739) -395 NM_152739 3205 Hs.659350 NM_152739 ENSG00000078399 HOXA9 ABD-B|HOX1|HOX1.7|HOX1G homeobox A9 protein-coding 223.667-2 chr1 26809625 26810186 + 1.66667 NA Intergenic AluSx4|SINE|Alu -16783 NM_032283 84243 Hs.523710 NM_032283 ENSG00000204160 ZDHHC18 DHHC-18|DHHC18 zinc finger DHHC-type containing 18 protein-coding 425.167-3 chr6 36766061 36766368 + 1.66667 NA intron (NM_020939, intron 10 of 20) intron (NM_020939, intron 10 of 20) -8805 NM_001314018 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 194-35 chr5 168469125 168469273 + 1.66667 NA 3' UTR (NM_015238, exon 23 of 23) 3' UTR (NM_015238, exon 23 of 23) -17272 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 240.167-25 chrX 81120989 81121285 + 1.66667 NA intron (NM_030763, intron 2 of 6) intron (NM_030763, intron 2 of 6) 80776 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 196.667-32 chr20 349922 350135 + 1.66667 NA intron (NM_001323684, intron 4 of 4) (TTAT)n|Simple_repeat|Simple_repeat 2123 NM_001323685 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 389.167-6 chr6 152634383 152634662 + 1.66667 NA intron (NM_182961, intron 2 of 145) intron (NM_182961, intron 2 of 145) 2329 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 405.834 chr12 110698403 110698704 + 1.66667 NA Intergenic Intergenic -8776 NM_001256413 84329 Hs.211511 NM_032369 ENSG00000122986 HVCN1 HV1|VSOP hydrogen voltage gated channel 1 protein-coding 402.834-5 chr12 51728970 51729381 + 1.66667 NA intron (NM_001369788, intron 12 of 25) intron (NM_001369788, intron 12 of 25) 102742 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 365.667 chr11 116499318 116499834 + 1.66667 NA Intergenic Intergenic -139846 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 367.667-6 chr4 189124314 189124614 + 1.66667 NA Intergenic Intergenic 347807 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 398.667-2 chr11 112954403 112954804 + 1.66667 NA Intergenic L1MB3|LINE|L1 -6817 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 525.667 chr2 43441726 43442444 + 1.66667 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 153889 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 318.834-7 chr22 41207037 41207369 + 1.66667 NA intron (NM_031488, intron 1 of 16) MIR|SINE|MIR 1891 NM_031488 83746 Hs.517641 NM_031488 ENSG00000100395 L3MBTL2 H-l(3)mbt-l|L3MBT L3MBTL histone methyl-lysine binding protein 2 protein-coding 387.667-7 chr6 41477352 41477726 + 1.66667 NA Intergenic L1ME2|LINE|L1 -24905 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 221-8 chr12 129623866 129624070 + 1.66667 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 280057 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 170.833-8 chr10 77122104 77122273 + 1.66667 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) -18643 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 402.667-4 chr11 84899668 84899991 + 1.66667 NA intron (NM_001351274, intron 5 of 26) MER135|DNA|DNA 23592 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 311-21 chr8 129358111 129358358 + 1.66667 NA intron (NR_130920, intron 3 of 3) intron (NR_130920, intron 3 of 3) -116994 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 468.666-2 chr9 102744798 102745248 + 1.66667 NA Intergenic Intergenic 225386 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 320-14 chr4 93797577 93797830 + 1.66667 NA Intergenic MamGypLTR1a|LTR|Gypsy -31050 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 216.834-13 chr7 27110742 27110961 + 1.66667 NA intron (NM_153631, intron 2 of 3) intron (NM_153631, intron 2 of 3) -8168 NM_006735 3199 Hs.445239 NM_006735 ENSG00000105996 HOXA2 HOX1K|MCOHI homeobox A2 protein-coding 281.5-22 chr7 6103073 6103412 + 1.66667 NA Intergenic Intergenic -1707 NM_032172 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 274.667-21 chr5 158344378 158344630 + 1.66667 NA intron (NR_109888, intron 4 of 6) L1ME4b|LINE|L1 65269 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 347.5-7 chr19 29662419 29662730 + 1.66667 NA Intergenic Intergenic -2887 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 267.5-18 chr17 60524844 60525031 + 1.66667 NA intron (NM_006380, intron 1 of 12) intron (NM_006380, intron 1 of 12) 1303 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 214.501-2 chr6 122816092 122816241 + 1.66667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 26908 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 316-15 chr8 38756623 38756904 + 1.66667 NA promoter-TSS (NM_001352804) promoter-TSS (NM_001352804) -512 NM_001352797 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 471.167-4 chr22 28457800 28458240 + 1.66667 NA intron (NM_001145418, intron 2 of 22) L1M4|LINE|L1 -1849 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 261 chr1 147390081 147390388 + 1.66667 NA intron (NR_038423, intron 3 of 3) L1P4d|LINE|L1 127641 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 449.333-3 chr5 4295525 4296187 + 1.66667 NA Intergenic Intergenic -477625 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 275-28 chr7 85532192 85532448 + 1.66667 NA Intergenic Intergenic 111198 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 237.667-26 chr3 48465648 48465845 + 1.66667 NA promoter-TSS (NM_007248) promoter-TSS (NM_007248) -84 NM_007248 11277 Hs.707026 NM_007248 ENSG00000213689 TREX1 AGS1|CRV|DRN3|HERNS three prime repair exonuclease 1 protein-coding 576.334 chr2 215930993 215931492 + 1.66667 NA Intergenic Intergenic 82309 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 195.333-28 chr7 105058746 105059043 + 1.66667 NA intron (NM_182931, intron 3 of 26) intron (NM_182931, intron 3 of 26) 44689 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 330.834-2 chr2 16764778 16765014 + 1.66667 NA Intergenic Intergenic -99062 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 214.5-29 chr6 57027940 57028088 + 1.66667 NA TTS (NM_152731) TTS (NM_152731) -18518 NM_001286274 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 281.667-12 chr2 169133245 169133476 + 1.66667 NA intron (NM_004525, intron 76 of 78) intron (NM_004525, intron 76 of 78) 52253 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 292.334-7 chr3 131942964 131943298 + 1.66667 NA intron (NM_001289112, intron 1 of 15) MER46C|DNA|TcMar-Tigger 42800 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 173.5-38 chr22 34891035 34891525 + 1.66667 NA intron (NR_138042, intron 3 of 4) MLT1K|LTR|ERVL-MaLR 106636 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 212.333-12 chr17 75124326 75124701 + 1.66667 NA intron (NM_024585, intron 2 of 2) intron (NM_024585, intron 2 of 2) 7229 NR_045513 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 251.667-20 chr2 72576493 72576784 + 1.66667 NA intron (NR_135774, intron 6 of 19) MER103C|DNA|hAT-Charlie 249395 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 818-2 chr11 22920727 22921567 + 1.66667 NA Intergenic MER20|DNA|hAT-Charlie -60673 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 245.667-28 chr8 91753294 91753598 + 1.66667 NA Intergenic Intergenic 264234 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 385.5-3 chr2 74507107 74507772 + 1.66667 NA intron (NM_032673, intron 1 of 8) CpG 256 NM_032673 84759 Hs.316750 NM_032673 ENSG00000115289 PCGF1 2010002K04Rik|NSPC1|RNF3A-2|RNF68 polycomb group ring finger 1 protein-coding 419.167 chr1 31065436 31065840 + 1.66667 NA promoter-TSS (NM_014676) promoter-TSS (NM_014676) 79 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 207.834-8 chr3 174433897 174434151 + 1.66667 NA Intergenic L1MB3|LINE|L1 -425310 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 244.667-33 chr7 34077492 34077652 + 1.66667 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 172033 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 450.501 chr3 159765242 159765582 + 1.66667 NA TTS (NR_121669) TTS (NR_121669) 3200 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 368.001-2 chr22 39399422 39399667 + 1.66667 NA promoter-TSS (NM_006116) promoter-TSS (NM_006116) -236 NM_153497 10454 Hs.507681 NM_006116 ENSG00000100324 TAB1 3'-Tab1|MAP3K7IP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 protein-coding 421.833-3 chr2 133886238 133886895 + 1.66667 NA Intergenic MIRb|SINE|MIR -233369 NM_001371457 347-26 chr9 109968202 109968800 + 1.66667 NA intron (NM_147150, intron 6 of 9) intron (NM_147150, intron 6 of 9) -80097 NM_001004065 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 242.834-3 chr1 194266509 194266801 + 1.66667 NA Intergenic Intergenic 961910 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 234.333-16 chr2 133024803 133025043 + 1.66667 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 109366 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 263.833-4 chr18 44567089 44567488 + 1.66667 NA Intergenic ERVL-E-int|LTR|ERVL 35509 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 261.5-17 chr17 40314654 40314885 + 1.66667 NA intron (NM_000964, intron 1 of 8) intron (NM_000964, intron 1 of 8) -3476 NM_001145301 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 217.834 chr10 70202685 70202920 + 1.66667 NA TTS (NM_021129) TTS (NM_021129) 30627 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 350.334-9 chr2 191155851 191156135 + 1.66667 NA Intergenic MIR|SINE|MIR -4397 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 192.5-19 chr2 10135953 10136170 + 1.66667 NA Intergenic Intergenic -5321 NR_161344 348738 Hs.454981 NR_161344 ENSG00000171848 C2orf48 - chromosome 2 open reading frame 48 ncRNA 280-11 chr18 6629697 6630043 + 1.66667 NA Intergenic Intergenic -99846 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 278.333-3 chr1 150999829 151000145 + 1.66667 NA intron (NM_001163258, intron 6 of 10) intron (NM_001163258, intron 6 of 10) 6810 NM_001163260 55793 Hs.743952 NM_018379 ENSG00000143409 MINDY1 FAM63A|MINDY-1 MINDY lysine 48 deubiquitinase 1 protein-coding 612 chr13 20943443 20944005 + 1.66667 NA intron (NR_104058, intron 2 of 5) intron (NR_104058, intron 2 of 5) 5704 NR_104058 101930748 Hs.637638 NR_104058 ENSG00000233780 LINC00367 - long intergenic non-protein coding RNA 367 ncRNA 172.167-23 chr5 149479778 149480139 + 1.66667 NA Intergenic AluSx1|SINE|Alu 49312 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 269.667-8 chr15 57485280 57485588 + 1.66667 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -106470 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 254.667-26 chr4 104551525 104551708 + 1.66667 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -56722 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 264-9 chr11 46932438 46932713 + 1.66667 NA Intergenic X8_LINE|LINE|CR1 -4114 NM_001278222 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 212.333-6 chr10 115722522 115722806 + 1.66667 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 472125 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 378.001 chr3 45001671 45001926 + 1.66667 NA intron (NR_023353, intron 3 of 6) intron (NR_023353, intron 3 of 6) -24505 NM_003278 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 487.5-7 chr16 79325732 79326151 + 1.66667 NA Intergenic Intergenic 274796 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 434.001-2 chr8 129868347 129868655 + 1.66667 NA intron (NM_001353307, intron 6 of 13) intron (NM_001353307, intron 6 of 13) 71310 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 393.667-4 chr2 219530115 219530703 + 1.66667 NA intron (NM_018674, intron 1 of 9) intron (NM_018674, intron 1 of 9) 12688 NM_001195731 79586 Hs.516711 NM_024536 ENSG00000123989 CHPF CHSY2|CSS2 chondroitin polymerizing factor protein-coding 405-11 chr5 67656413 67656915 + 1.66667 NA Intergenic L1M6|LINE|L1 -9875 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 373.834-2 chr14 73951179 73951531 + 1.66667 NA intron (NM_182476, intron 1 of 11) L1MB8|LINE|L1 1053 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 183.667-11 chr11 97099496 97099655 + 1.66667 NA Intergenic L1PA15-16|LINE|L1 591150 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 402.667-5 chr11 129252142 129252535 + 1.66667 NA intron (NR_145484, intron 1 of 1) intron (NR_145484, intron 1 of 1) 30826 NR_145484 399975 NM_207431 LOC399975 - uncharacterized LOC399975 ncRNA 249.333-27 chr9 71035233 71035533 + 1.66667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 86238 NM_001366152 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 350.667-19 chr7 88226586 88227000 + 1.66667 NA intron (NM_198901, intron 1 of 7) intron (NM_198901, intron 1 of 7) 200 NM_001256892 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 412-8 chr9 36090418 36090756 + 1.66667 NA intron (NM_021111, intron 9 of 20) intron (NM_021111, intron 9 of 20) -45949 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 259.667-5 chr12 64922136 64922313 + 1.66667 NA intron (NR_146276, intron 3 of 3) intron (NR_146276, intron 3 of 3) 38450 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 185.333-39 chr5 10022528 10022760 + 1.66667 NA Intergenic L1M3f|LINE|L1 -118820 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 290.667-2 chr1 110544753 110545110 + 1.66667 NA Intergenic Plat_L3|LINE|CR1 -25756 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 211.5-38 chr4 145393643 145393883 + 1.66667 NA Intergenic HAL1|LINE|L1 -53344 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 308.834-6 chr2 28218236 28218461 + 1.66667 NA intron (NM_199193, intron 8 of 13) L1MC4|LINE|L1 -11387 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 250.667-6 chr11 107543760 107544005 + 1.66667 NA intron (NM_138775, intron 7 of 11) Tigger13a|DNA|TcMar-Tigger 21853 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 341.167-11 chr5 9848732 9849040 + 1.66667 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -5491 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 768.667-4 chr6 71012984 71013920 + 1.66667 NA Intergenic Intergenic -56392 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 260.667-45 chr9 21331180 21331373 + 1.66667 NA 3' UTR (NM_018847, exon 1 of 1) 3' UTR (NM_018847, exon 1 of 1) 4128 NM_018847 55958 Hs.701778 NM_018847 ENSG00000198642 KLHL9 - kelch like family member 9 protein-coding 368.501-2 chr2 173449336 173449948 + 1.66667 NA Intergenic AluY|SINE|Alu 94770 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 326.667-8 chr5 110158085 110158370 + 1.66667 NA Intergenic L1ME3C|LINE|L1 275045 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 228.333-28 chr6 144115766 144116026 + 1.66667 NA Intergenic L1MA6|LINE|L1 -20323 NM_031287 83443 Hs.110695 NM_031287 ENSG00000169976 SF3B5 SF3b10|Ysf3 splicing factor 3b subunit 5 protein-coding 312.333-11 chr13 54964534 54964832 + 1.66667 NA Intergenic AluSx|SINE|Alu -209771 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 207.667-49 chr9 81547733 81547859 + 1.66667 NA Intergenic Arthur1B|DNA|hAT-Tip100 141739 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 266-9 chr15 71221793 71222031 + 1.66667 NA intron (NM_024817, intron 3 of 16) L1MB3|LINE|L1 -32853 NR_120351 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 169.333-42 chr3 115512835 115513078 + 1.66667 NA Intergenic Intergenic -110554 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 244.333-15 chr2 101903877 101904168 + 1.66667 NA Intergenic L1MC5|LINE|L1 -79443 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 398.501-2 chr2 130921613 130922032 + 1.66667 NA intron (NM_001367493, intron 2 of 13) AluSx1|SINE|Alu 84908 NM_001367493 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 248.667-33 chr6 143369012 143369292 + 1.66667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 73525 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 305.167-14 chrX 63967619 63967841 + 1.66667 NA Intergenic Intergenic -181643 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 367.667 chr10 25569254 25569547 + 1.66667 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -82312 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 301.667-19 chr8 106778395 106778645 + 1.66667 NA Intergenic MIRb|SINE|MIR -8276 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 231-18 chr2 110854479 110854904 + 1.66667 NA intron (NM_001371254, intron 10 of 18) intron (NM_001371254, intron 10 of 18) 122118 NM_001371254 454.834-4 chr4 113960276 113960717 + 1.66667 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 19151 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 323.334-5 chr6 90371320 90371548 + 1.66667 NA Intergenic Intergenic 58692 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 420.834 chr7 44428821 44429217 + 1.66667 NA intron (NM_015332, intron 2 of 5) intron (NM_015332, intron 2 of 5) 61639 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 338.001-2 chr7 18325980 18326185 + 1.66667 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 35990 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 298.334-6 chr5 67161263 67161714 + 1.66667 NA intron (NM_001297651, intron 24 of 25) HAL1|LINE|L1 35311 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 324.834 chr1 241481355 241481662 + 1.66667 NA Intergenic Intergenic 38277 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 243.667-32 chr3 2737709 2737975 + 1.66667 NA intron (NM_175607, intron 5 of 24) intron (NM_175607, intron 5 of 24) -154373 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 323.334 chr12 122799585 122799870 + 1.66667 NA intron (NR_027918, intron 8 of 12) intron (NR_027918, intron 8 of 12) 25155 NM_201435 84660 Hs.592008 NM_032573 ENSG00000130783 CCDC62 CT109|ERAP75|TSP-NY coiled-coil domain containing 62 protein-coding 243.667-40 chr9 122781133 122781387 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -7673 NM_001001923 392391 Hs.534761 NM_001001923 ENSG00000148215 OR5C1 OR5C2P|OR9-31|OR9-F olfactory receptor family 5 subfamily C member 1 protein-coding 304.333-14 chr8 63333912 63334302 + 1.66667 NA Intergenic Intergenic -131742 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 315.834-3 chr13 95667202 95667506 + 1.66667 NA Intergenic L1M1|LINE|L1 9571 NR_132117 100289274 Hs.594844 NR_132117 ENSG00000247400 DNAJC3-DT DNAJC3-AS1 DNAJC3 divergent transcript ncRNA 248.334-14 chr5 84665515 84665811 + 1.66667 NA Intergenic L4_A_Mam|LINE|RTE-X -280783 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 214.667-45 chr9 82034351 82034512 + 1.66667 NA Intergenic Intergenic 45659 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 323-10 chr16 26117426 26117918 + 1.66667 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 92435 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 347.333-7 chr16 67349223 67349713 + 1.66667 NA intron (NM_018296, intron 4 of 13) intron (NM_018296, intron 4 of 13) 2113 NM_001161575 55282 Hs.125139 NM_018296 ENSG00000159708 LRRC36 RORBP70|XLHSRF2 leucine rich repeat containing 36 protein-coding 441.333-3 chr7 110714461 110715035 + 1.66667 NA intron (NM_001350963, intron 5 of 5) AluSx1|SINE|Alu -376258 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 655.334-2 chr19 48107248 48108127 + 1.66667 NA intron (NM_001159323, intron 1 of 16) LTR13|LTR|ERVK 3130 NM_003706 8605 Hs.631562 NM_003706 ENSG00000105499 PLA2G4C CPLA2-gamma phospholipase A2 group IVC protein-coding 395.501-2 chr11 74748469 74748800 + 1.66667 NA promoter-TSS (NM_001098638) promoter-TSS (NM_001098638) -215 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 204-44 chr9 21465790 21466054 + 1.66667 NA intron (NR_152878, intron 2 of 2) AluJb|SINE|Alu 16391 NM_176891 338376 Hs.682604 NM_176891 ENSG00000184995 IFNE IFN-E|IFNE1|IFNT1|INFE1|PRO655 interferon epsilon protein-coding 205.834-2 chr10 15897574 15897860 + 1.66667 NA Intergenic Intergenic -37184 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 340-4 chr11 6672774 6673087 + 1.66667 NA Intergenic L2c|LINE|L2 10410 NM_022061 63875 Hs.523456 NM_022061 ENSG00000158042 MRPL17 L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26 mitochondrial ribosomal protein L17 protein-coding 295.667-9 chr17 63439602 63440012 + 1.66667 NA intron (NM_001915, intron 1 of 5) intron (NM_001915, intron 1 of 5) 460 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 303.334-10 chr3 89637260 89637449 + 1.66667 NA Intergenic L1ME3A|LINE|L1 529733 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 244.834-7 chr8 130142232 130142525 + 1.66667 NA intron (NM_001362925, intron 14 of 29) intron (NM_001362925, intron 14 of 29) -57610 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 450.334-3 chr4 41151202 41151598 + 1.66667 NA intron (NM_173075, intron 1 of 16) MER3|DNA|hAT-Charlie 63142 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 188-48 chr7 9115133 9115327 + 1.66667 NA Intergenic Intergenic -519040 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 622.334 chr4 56487270 56487945 + 1.66667 NA intron (NR_151856, intron 11 of 19) intron (NR_151856, intron 11 of 19) -17602 NM_206919 132946 Hs.444449 NM_206919 ENSG00000196503 ARL9 - ADP ribosylation factor like GTPase 9 protein-coding 315.333-20 chr6 47688041 47688519 + 1.66667 NA intron (NM_153839, intron 8 of 10) AluJb|SINE|Alu -10300 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 444.668 chr16 69395035 69395353 + 1.66667 NA Intergenic Intergenic -9187 NM_005652 7014 Hs.63335 NM_005652 ENSG00000132604 TERF2 TRBF2|TRF2 telomeric repeat binding factor 2 protein-coding 309.167-13 chr5 101590414 101590698 + 1.66667 NA Intergenic L1MDa|LINE|L1 -687274 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 331.501-3 chr8 142772997 142773383 + 1.66667 NA 3' UTR (NM_177476, exon 4 of 4) 3' UTR (NM_177476, exon 4 of 4) 3341 NM_001356370 66004 Hs.158665 NM_177457 ENSG00000180155 LYNX1 - Ly6/neurotoxin 1 protein-coding 439.167-4 chr19 34733873 34734185 + 1.66667 NA promoter-TSS (NM_001145665) promoter-TSS (NM_001145665) -214 NM_001145665 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 282-5 chr10 74234740 74234983 + 1.66667 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 58098 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 255.167-26 chr4 58046969 58047244 + 1.66667 NA Intergenic Intergenic 489222 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 287.333-15 chr5 136811452 136811651 + 1.66667 NA Intergenic MER63D|DNA|hAT-Blackjack -316646 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 423-8 chr18 38718761 38719124 + 1.66667 NA Intergenic LTR12C|LTR|ERV1 903233 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 480.001-2 chr22 27895307 27895979 + 1.66667 NA intron (NM_001284278, intron 6 of 11) intron (NM_001284278, intron 6 of 11) 23571 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 290.333-21 chr8 30655994 30656288 + 1.66667 NA intron (NM_002095, intron 1 of 7) MIRc|SINE|MIR 1477 NM_001348353 2961 Hs.77100 NM_002095 ENSG00000197265 GTF2E2 FE|TF2E2|TFIIE-B|TTD6 general transcription factor IIE subunit 2 protein-coding 350.999 chr9 86416566 86416997 + 1.66667 NA Intergenic Intergenic -62371 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 408.667-3 chr2 16211065 16211360 + 1.66667 NA Intergenic L2c|LINE|L2 160785 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 263.334-7 chr2 221685826 221685995 + 1.66667 NA Intergenic Intergenic -111708 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 736.333 chr1 10429928 10430708 + 1.66667 NA promoter-TSS (NR_036462) promoter-TSS (NR_036462) -115 NM_198544 100526739 Hs.412311 NM_198544 ENSG00000251503 CENPS-CORT APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1 CENPS-CORT readthrough protein-coding 334.334-4 chr12 20964660 20965208 + 1.66667 NA intron (NM_001371097, intron 13 of 15) MER4-int|LTR|ERV1 -50762 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 332.501-3 chr7 30206600 30206917 + 1.66667 NA Intergenic Intergenic 71772 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 270.5-20 chr2 54723464 54723789 + 1.66667 NA Intergenic CpG -1386 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 281.333-17 chr2 102303668 102303877 + 1.66667 NA Intergenic MIR|SINE|MIR -7730 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 219.334-8 chr3 3973362 3973723 + 1.66667 NA Intergenic L2a|LINE|L2 -172667 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 255.501-3 chr8 63611854 63612112 + 1.66667 NA Intergenic MLT1K|LTR|ERVL-MaLR 146134 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 220.667-27 chr4 83128685 83128865 + 1.66667 NA Intergenic Intergenic -14046 NM_016619 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 200-12 chr14 25521649 25521861 + 1.66667 NA Intergenic Intergenic -471458 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 637.834-3 chr19 49495773 49496480 + 1.66667 NA promoter-TSS (NM_001015) promoter-TSS (NM_001015) -308 NM_001015 6205 Hs.433529 NM_001015 ENSG00000142534 RPS11 S11 ribosomal protein S11 protein-coding 407.333-8 chr7 77332004 77332456 + 1.66667 NA intron (NM_001350897, intron 18 of 29) intron (NM_001350897, intron 18 of 29) -82968 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 238.5-20 chr20 9318722 9319210 + 1.66667 NA intron (NM_000933, intron 1 of 35) intron (NM_000933, intron 1 of 35) 11166 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 663.333-3 chr6 2846081 2846838 + 1.66667 NA Intergenic Intergenic -4596 NR_073111 1992 Hs.381167 NM_030666 ENSG00000021355 SERPINB1 EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin family B member 1 protein-coding 298.334-9 chr6 137342589 137342814 + 1.66667 NA Intergenic Intergenic -123271 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 295.167-3 chr11 23803477 23803834 + 1.66667 NA Intergenic Intergenic -384465 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 390.667-3 chr2 176154889 176155307 + 1.66667 NA Intergenic Intergenic -2209 NM_006898 3232 Hs.93574 NM_006898 ENSG00000128652 HOXD3 HOX1D|HOX4|HOX4A|Hox-4.1 homeobox D3 protein-coding 270.334-11 chrX 155057251 155057750 + 1.66667 NA 3' UTR (NM_023934, exon 5 of 5) 3' UTR (NM_023934, exon 5 of 5) 13636 NM_001018025 4515 Hs.6917 NM_014221 ENSG00000214827 MTCP1 P13MTCP1|p8MTCP1 mature T cell proliferation 1 protein-coding 303.334-12 chr4 166471484 166471769 + 1.66667 NA Intergenic L1ME1|LINE|L1 598389 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 362.333-7 chr14 104826316 104826676 + 1.66667 NA Intergenic CpG 5295 NR_024396 196872 Hs.352220 NR_024396 ENSG00000258701 LINC00638 - long intergenic non-protein coding RNA 638 ncRNA 270-31 chr4 146931178 146931408 + 1.66667 NA intron (NR_133922, intron 4 of 13) intron (NR_133922, intron 4 of 13) 14571 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 456.167-5 chr9 4478561 4479241 + 1.66667 NA Intergenic L1MC5a|LINE|L1 -11567 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 248.333-5 chr10 27710230 27710418 + 1.66667 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -34291 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 365.333-3 chr10 9208166 9208461 + 1.66667 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -67300 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 213.334-5 chr12 55075421 55075601 + 1.66667 NA Intergenic L1PA10|LINE|L1 -54258 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 256-20 chr4 2228751 2229391 + 1.66667 NA 3' UTR (NM_024511, exon 5 of 5) 3' UTR (NM_024511, exon 5 of 5) 13050 NM_024511 79441 Hs.665869 NM_024511 ENSG00000214367 HAUS3 C4orf15|IT1|dgt3 HAUS augmin like complex subunit 3 protein-coding 304.5-4 chr1 210645027 210645574 + 1.66667 NA intron (NM_001122834, intron 11 of 11) AluY|SINE|Alu 315934 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 280.167-9 chr20 54141064 54141340 + 1.66667 NA Intergenic Intergenic 32784 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 329.334-5 chr3 47223511 47223902 + 1.66667 NA intron (NR_033373, intron 2 of 6) AluJb|SINE|Alu 26903 NR_145712 109617025 NR_145712 SNORD13J - small nucleolar RNA, C/D box 13J snoRNA 362.501-2 chr12 112382529 112382786 + 1.66667 NA promoter-TSS (NM_001109662) promoter-TSS (NM_001109662) -226 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 356.5-6 chr19 11155758 11156067 + 1.66667 NA promoter-TSS (NM_001317032) promoter-TSS (NM_001317032) -100 NM_001317032 147841 Hs.381225 NM_182513 ENSG00000161888 SPC24 SPBC24 SPC24 component of NDC80 kinetochore complex protein-coding 194.667-26 chr17 43003778 43004131 + 1.66667 NA TTS (NR_146327) TTS (NR_146327) -2830 NM_005533 3430 Hs.632258 NM_005533 ENSG00000068079 IFI35 IFP35 interferon induced protein 35 protein-coding 164.334-5 chr5 130289197 130289381 + 1.66667 NA Intergenic Intergenic 384824 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 350.667-20 chr8 136403579 136403827 + 1.66667 NA Intergenic L1MA5|LINE|L1 -127095 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 408.167-3 chr20 8230168 8230781 + 1.66667 NA intron (NM_182734, intron 2 of 32) L1MA4A|LINE|L1 -18230 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 185.833-18 chr20 37219190 37219396 + 1.66667 NA intron (NM_001135771, intron 8 of 16) L1MB7|LINE|L1 37615 NM_021081 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 377-9 chr22 37567150 37567702 + 1.66667 NA intron (NM_152243, intron 2 of 2) intron (NM_152243, intron 2 of 2) 6946 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 164.167-2 chr1 85783655 85783822 + 1.66667 NA intron (NM_152890, intron 50 of 59) L1ME2z|LINE|L1 -75305 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 170.5-19 chr18 9643655 9643848 + 1.66667 NA Intergenic Intergenic 28487 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 476.167-2 chr14 103103261 103104024 + 1.66667 NA intron (NM_001077594, intron 2 of 10) CpG-7692 3498 NM_001077594 91828 Hs.37712 NM_001077594 ENSG00000205436 EXOC3L4 C14orf73 exocyst complex component 3 like 4 protein-coding 287.167-6 chr16 56356336 56356663 + 1.66667 NA 3' UTR (NM_020988, exon 9 of 9) 3' UTR (NM_020988, exon 9 of 9) 68490 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 482.334 chr18 58785382 58785784 + 1.66667 NA Intergenic Intergenic -28297 NR_146904 105372147 Hs.210837 NR_146904 ENSG00000267593 LINC01926 - long intergenic non-protein coding RNA 1926 ncRNA 235-28 chr6 107131565 107131764 + 1.66667 NA Intergenic Intergenic -16149 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 190.834-3 chr2 17742990 17743147 + 1.66667 NA intron (NM_024624, intron 2 of 26) L1MD1|LINE|L1 10742 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 394.001-7 chr5 115250052 115250453 + 1.66667 NA intron (NM_005023, intron 2 of 8) intron (NM_005023, intron 2 of 8) 12625 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 382.167-10 chr8 22422139 22422618 + 1.66667 NA 3' UTR (NM_001351659, exon 9 of 9) 3' UTR (NM_001351659, exon 9 of 9) -18592 NM_001243974 5533 Hs.731683 NM_005605 ENSG00000120910 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3 catalytic subunit gamma protein-coding 171-46 chr3 156095015 156095175 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -25453 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 451.5-3 chr8 142865012 142865661 + 1.66667 NA Intergenic L1P4b|LINE|L1 14484 NM_000497 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 384.334-3 chr3 59142183 59142563 + 1.66667 NA Intergenic Intergenic -92341 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 310.001-2 chr17 40440925 40441126 + 1.66667 NA Intergenic Intergenic -2425 NM_001552 3487 Hs.462998 NM_001552 ENSG00000141753 IGFBP4 BP-4|HT29-IGFBP|IBP4|IGFBP-4 insulin like growth factor binding protein 4 protein-coding 319.666-2 chr5 22972183 22972713 + 1.66667 NA Intergenic AluSx3|SINE|Alu -119104 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 460.5-5 chr5 7392593 7393069 + 1.66667 NA Intergenic Intergenic -3307 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 218.334 chr13 59907268 59907408 + 1.66667 NA intron (NM_001258369, intron 20 of 26) intron (NM_001258369, intron 20 of 26) -105380 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 487.334 chr15 57306562 57307250 + 1.66667 NA non-coding (NR_024433, exon 2 of 3) non-coding (NR_024433, exon 2 of 3) 6541 NR_024433 283663 Hs.181297 NR_024433 ENSG00000247982 LINC00926 - long intergenic non-protein coding RNA 926 ncRNA 236-29 chr8 126109622 126109837 + 1.66667 NA Intergenic Intergenic -158532 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 391.834-4 chr17 79011431 79012025 + 1.66667 NA Intergenic MER41B|LTR|ERV1 -1964 NM_001159772 124583 Hs.8859 NM_138793 ENSG00000171302 CANT1 DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY calcium activated nucleotidase 1 protein-coding 276.334-10 chr8 99959876 99960211 + 1.66667 NA TTS (NM_001286693) TTS (NM_001286693) -44539 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 302.334-3 chr11 113806346 113806543 + 1.66667 NA intron (NM_001346272, intron 17 of 22) intron (NM_001346272, intron 17 of 22) 26648 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 274.667-2 chr1 41417033 41417306 + 1.66667 NA Intergenic Intergenic -41500 NR_135817 101929901 NR_135817 ENSG00000229901 LOC101929901 - uncharacterized LOC101929901 ncRNA 432-7 chr6 70790818 70791179 + 1.66667 NA intron (NM_021940, intron 4 of 9) intron (NM_021940, intron 4 of 9) 122468 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 325.167-11 chr6 36874773 36875135 + 1.66667 NA promoter-TSS (NM_016059) promoter-TSS (NM_016059) -151 NM_016059 51645 Hs.27693 NM_016059 ENSG00000137168 PPIL1 CGI-124|CYPL1|PPIase|hCyPX peptidylprolyl isomerase like 1 protein-coding 166-38 chr18 42659626 42659781 + 1.66667 NA intron (NR_046174, intron 7 of 9) L1ME4a|LINE|L1 455982 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 258-5 chr10 109192976 109193218 + 1.66667 NA Intergenic L2a|LINE|L2 730149 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 387-22 chr8 86255685 86255940 + 1.66667 NA Intergenic Intergenic -25431 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 200.833-4 chr1 114201829 114202068 + 1.66667 NA Intergenic Intergenic -48079 NM_001366224 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 326.833-11 chr19 29084217 29084504 + 1.66667 NA Intergenic Intergenic 81805 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 256.334-12 chr8 51692666 51692865 + 1.66667 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 116680 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 266.667-19 chr6 69166850 69167017 + 1.66667 NA intron (NM_001704, intron 17 of 31) MamRep605|LTR?|LTR? 531651 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 405.167-7 chr8 3536614 3536923 + 1.66667 NA intron (NM_033225, intron 10 of 69) MER105|DNA|hAT-Charlie -808317 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 237.5-38 chr7 45692632 45692803 + 1.66667 NA intron (NM_021116, intron 14 of 19) L1MA9|LINE|L1 76301 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 288.667-4 chr11 120769219 120769525 + 1.66667 NA intron (NM_001282470, intron 2 of 19) L1MA9|LINE|L1 49743 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 313.167-8 chr14 54605267 54605513 + 1.66667 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 37778 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 700.5-2 chr20 38645756 38646754 + 1.66667 NA intron (NM_001164431, intron 12 of 14) CpG 44446 NM_001164431 343578 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 329.667-4 chr2 46656775 46657199 + 1.66667 NA Intergenic Intergenic 39772 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 317.334-2 chr15 90886227 90886652 + 1.66667 NA intron (NM_001143784, intron 2 of 16) MIR3|SINE|MIR 1393 NM_001143783 2242 Hs.7636 NM_002005 ENSG00000182511 FES FPS FES proto-oncogene, tyrosine kinase protein-coding 266.334-5 chr5 96694002 96694213 + 1.66667 NA intron (NM_001330629, intron 2 of 30) intron (NM_001330629, intron 2 of 30) -8553 NM_001330634 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 325.5-15 chr3 82430900 82431260 + 1.66667 NA intron (NR_147146, intron 4 of 8) intron (NR_147146, intron 4 of 8) 444938 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 290.667-5 chr14 45408192 45408549 + 1.66667 NA Intergenic Intergenic -155168 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 500.833 chr3 123732149 123732751 + 1.66667 NA intron (NM_053026, intron 10 of 32) intron (NM_053026, intron 10 of 32) 42806 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 243.834-11 chr9 96482413 96482570 + 1.66667 NA intron (NM_014282, intron 5 of 7) L1MB4|LINE|L1 32322 NM_014282 22927 Hs.494567 NM_014282 ENSG00000130956 HABP4 IHABP-4|IHABP4|Ki-1/57|SERBP1L hyaluronan binding protein 4 protein-coding 641.5-2 chr3 111715672 111716583 + 1.66667 NA intron (NM_153268, intron 3 of 3) intron (NM_153268, intron 3 of 3) -16369 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 298.834-4 chr21 27134514 27134722 + 1.66667 NA Intergenic Intergenic -167530 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 329.667-10 chr7 35676376 35676714 + 1.66667 NA intron (NM_022373, intron 2 of 8) L1MC5a|LINE|L1 18590 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 378.667-10 chr4 11319385 11319762 + 1.66667 NA Intergenic MIRb|SINE|MIR -49254 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 393.001 chr20 18265759 18266203 + 1.66667 NA Intergenic HAL1ME|LINE|L1 -22247 NM_001283005 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 237-10 chr14 26507976 26508219 + 1.66667 NA intron (NM_001366393, intron 2 of 4) intron (NM_001366393, intron 2 of 4) 45333 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 257.333-15 chr22 35037110 35037331 + 1.66667 NA Intergenic Intergenic -28938 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 221.667-13 chr13 89451230 89451395 + 1.66667 NA Intergenic LTR64|LTR|ERV1 49197 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 514.667-2 chr10 90921034 90921665 + 1.66667 NA promoter-TSS (NM_014391) promoter-TSS (NM_014391) -74 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 247.5-30 chr21 20642015 20642374 + 1.66667 NA Intergenic AluJr|SINE|Alu 160914 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 244.167-12 chr2 43741089 43741380 + 1.66667 NA intron (NM_172069, intron 21 of 29) intron (NM_172069, intron 21 of 29) -32805 NM_015522 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 310.834-2 chr2 52802763 52803099 + 1.66667 NA Intergenic Intergenic -100316 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 187.834-6 chr17 69406567 69406729 + 1.66667 NA Intergenic MER2|DNA|TcMar-Tigger -8049 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 239-27 chr4 44233022 44233320 + 1.66667 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 215638 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 387-6 chr18 8858797 8859127 + 1.66667 NA Intergenic Intergenic 141581 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 241.5-2 chr1 108643476 108643788 + 1.66667 NA Intergenic Intergenic 17461 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 254.167-25 chr6 118990945 118991138 + 1.66667 NA intron (NM_024581, intron 9 of 17) intron (NM_024581, intron 9 of 17) -55879 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 173.5-13 chr11 113096645 113096808 + 1.66667 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -133266 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 368.167 chr1 92825786 92826052 + 1.66667 NA Intergenic AluJb|SINE|Alu -6067 NR_146333 6125 Hs.532359 NM_000969 ENSG00000122406 RPL5 L5|MSTP030|PPP1R135|uL18 ribosomal protein L5 protein-coding 339.667-15 chr5 123367936 123368307 + 1.66667 NA intron (NM_153223, intron 18 of 20) intron (NM_153223, intron 18 of 20) 55471 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 214.834-2 chr12 76374480 76375037 + 1.66667 NA intron (NM_001319655, intron 14 of 20) MLT1G|LTR|ERVL-MaLR -26343 NM_024685 79738 Hs.96322 NM_024685 ENSG00000179941 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 200.667-32 chr3 58414747 58414940 + 1.66667 NA intron (NM_017771, intron 17 of 17) intron (NM_017771, intron 17 of 17) 18989 NM_000925 5162 Hs.161357 NM_000925 ENSG00000168291 PDHB PDHBD|PDHE1-B|PDHE1B|PHE1B pyruvate dehydrogenase E1 beta subunit protein-coding 238.834-7 chr2 71800866 71801199 + 1.66667 NA Intergenic Intergenic 334333 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 204-40 chr8 64260878 64261129 + 1.66667 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 107555 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 328.833-6 chr2 240076648 240076946 + 1.66667 NA Intergenic L1MEi|LINE|L1 -30725 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 320.833-4 chr2 61837299 61837705 + 1.66667 NA intron (NR_037710, intron 3 of 5) AluSx1|SINE|Alu 16558 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 225-34 chr6 150857691 150857863 + 1.66667 NA Intergenic LTR47B4|LTR|ERVL -7902 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 382.501-3 chrX 103688888 103689137 + 1.66667 NA promoter-TSS (NM_001142428) promoter-TSS (NM_001142428) -854 NM_001142420 9643 Hs.326387 NM_012286 ENSG00000123562 MORF4L2 MORFL2|MRGX mortality factor 4 like 2 protein-coding 267.5-15 chr15 60184695 60185093 + 1.66667 NA Intergenic L2b|LINE|L2 180583 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 369.333 chr10 74728186 74728486 + 1.66667 NA Intergenic MSTB|LTR|ERVL-MaLR -96919 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 279.833-14 chr6 16539766 16540069 + 1.66667 NA intron (NM_000332, intron 5 of 8) intron (NM_000332, intron 5 of 8) 220267 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 221-40 chrX 57740797 57741001 + 1.66667 NA Intergenic L1MA8|LINE|L1 -60639 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 332.834-2 chr2 4922096 4922476 + 1.66667 NA Intergenic THE1B|LTR|ERVL-MaLR -266064 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 217.667-23 chr2 18518306 18518793 + 1.66667 NA Intergenic Intergenic 42104 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 223.667-33 chr20 43757517 43757814 + 1.66667 NA Intergenic Helitron1Na_Mam|RC|Helitron -30663 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 267.5-39 chr8 52464178 52464465 + 1.66667 NA Intergenic Intergenic -54442 NM_001352838 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 464.001 chr15 26990110 26990613 + 1.66667 NA intron (NM_001270873, intron 2 of 5) L1MA2|LINE|L1 19180 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 366.334-2 chr1 21703435 21703906 + 1.66667 NA intron (NM_001350167, intron 20 of 26) intron (NM_001350167, intron 20 of 26) -34313 NM_001350525 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 261.333-4 chr14 20600124 20600305 + 1.66667 NA intron (NR_122043, intron 3 of 4) L2b|LINE|L2 -9391 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 320.501-3 chr18 25477127 25477396 + 1.66667 NA Intergenic MIR|SINE|MIR -125095 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 290.501 chr11 12046477 12046651 + 1.66667 NA intron (NR_135109, intron 1 of 1) THE1D|LTR|ERVL-MaLR 15689 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 202.667-26 chr20 34186571 34186783 + 1.66667 NA Intergenic Intergenic -73688 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 258-21 chr2 210300236 210300542 + 1.66667 NA intron (NM_079422, intron 2 of 6) MER58A|DNA|hAT-Charlie 3226 NM_079422 4632 Hs.187338 NM_079420 ENSG00000168530 MYL1 MLC1F|MLC3F|MYOFTA myosin light chain 1 protein-coding 218.333-12 chr16 75008474 75008685 + 1.66667 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 9555 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 240-16 chr12 119606953 119607144 + 1.66667 NA intron (NM_001136534, intron 1 of 2) intron (NM_001136534, intron 1 of 2) 13274 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 362.001 chr1 30944301 30944611 + 1.66667 NA intron (NM_001020658, intron 18 of 21) intron (NM_001020658, intron 18 of 21) 4749 NR_033295 692235 NR_033295 SNORD103B U103B small nucleolar RNA, C/D box 103B snoRNA 237.834-7 chr4 72828030 72828208 + 1.66667 NA Intergenic Intergenic 241597 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 614.501-2 chr4 53508122 53508730 + 1.66667 NA intron (NM_001126328, intron 2 of 10) intron (NM_001126328, intron 2 of 10) 8349 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 627.167-2 chr14 73949494 73950136 + 1.66667 NA promoter-TSS (NM_182480) promoter-TSS (NM_182480) -119 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 415.833-8 chr5 59002726 59003221 + 1.66667 NA intron (NM_006203, intron 6 of 14) intron (NM_006203, intron 6 of 14) -3075 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 168-30 chr20 12807703 12807900 + 1.66667 NA Intergenic Intergenic 129162 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 335.667-8 chr15 50777006 50777272 + 1.66667 NA Intergenic Intergenic -11433 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 308.333-19 chr4 83927661 83928075 + 1.66667 NA Intergenic Intergenic 371301 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 275.833-18 chr3 48230331 48230639 + 1.66667 NA Intergenic Charlie1|DNA|hAT-Charlie 6990 NM_004345 820 Hs.51120 NM_004345 ENSG00000164047 CAMP CAP-18|CAP18|CRAMP|FALL-39|FALL39|HSD26|LL37 cathelicidin antimicrobial peptide protein-coding 473.668-2 chr5 21406946 21407424 + 1.66667 NA Intergenic LTR40a|LTR|ERVL -52295 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 286.667-23 chr7 20290016 20290337 + 1.66667 NA Intergenic (AAATA)n|Simple_repeat|Simple_repeat -6532 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 345.667-10 chr6 163541833 163542124 + 1.66667 NA intron (NM_206853, intron 4 of 6) intron (NM_206853, intron 4 of 6) 127260 NM_006775 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 415.334-3 chr13 43624802 43625155 + 1.66667 NA intron (NM_001127615, intron 1 of 16) L1MDa|LINE|L1 4499 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 172.167-3 chr10 51722365 51722793 + 1.66667 NA intron (NM_001098512, intron 3 of 17) MIRb|SINE|MIR -22984 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 175-50 chr6 38202742 38202946 + 1.66667 NA intron (NM_052893, intron 10 of 11) L1MA4A|LINE|L1 -278752 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 449.667-3 chr5 133460307 133460860 + 1.66667 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -32877 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 408.334-4 chr2 108467034 108467308 + 1.66667 NA intron (NR_028063, intron 3 of 21) L1M5|LINE|L1 17965 NR_028063 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 201.5-9 chr12 60948799 60949075 + 1.66667 NA Intergenic Intergenic 1243902 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 289.834-5 chr5 78294719 78295029 + 1.66667 NA promoter-TSS (NM_001271769) promoter-TSS (NM_001271769) -119 NM_003664 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 335.834-11 chr5 24919202 24919614 + 1.66667 NA Intergenic Intergenic -78825 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 450.167-2 chr13 90869021 90869397 + 1.66667 NA Intergenic Intergenic 57388 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 363.333-4 chr2 74587611 74588216 + 1.66667 NA intron (NM_001321739, intron 4 of 10) intron (NM_001321739, intron 4 of 10) 33753 NM_001318869 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 374.834-3 chr5 157486873 157487158 + 1.66667 NA intron (NM_033274, intron 21 of 22) MLT1B|LTR|ERVL-MaLR -26915 NR_136205 102724404 Hs.570889 NR_136204 LOC102724404 - uncharacterized LOC102724404 ncRNA 251-15 chr2 112294273 112294526 + 1.66667 NA intron (NM_198581, intron 1 of 11) LTR37-int|LTR|ERV1 18802 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 449.167-2 chr3 83486302 83486708 + 1.66667 NA Intergenic MIR|SINE|MIR 1383070 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 303.167 chr2 59864168 59864443 + 1.66667 NA Intergenic Intergenic 518731 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 340.334-4 chr12 15502845 15503303 + 1.66667 NA intron (NM_030667, intron 5 of 26) intron (NM_030667, intron 5 of 26) -43537 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 297.5-8 chr12 69224700 69225055 + 1.66667 NA Intergenic Intergenic -14692 NM_001300947 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 408.833-6 chr4 77600580 77601357 + 1.66667 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 89215 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 284.334-3 chr13 65883050 65883282 + 1.66667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 17119 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 199.334-4 chr2 232023883 232024243 + 1.66667 NA intron (NR_046477, intron 3 of 18) intron (NR_046477, intron 3 of 18) 62350 NR_046476 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 175.667-30 chr20 36605509 36605685 + 1.66667 NA promoter-TSS (NM_199483) promoter-TSS (NM_199483) -182 NM_001199534 55969 Hs.584985 NM_018840 ENSG00000101084 RAB5IF C20orf24|PNAS-11|RIP5 RAB5 interacting factor protein-coding 379.667 chr1 21764915 21765227 + 1.66667 NA intron (NM_001350167, intron 1 of 26) intron (NM_001350167, intron 1 of 26) 18078 NM_001350167 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 415-9 chr5 16472700 16473122 + 1.66667 NA TTS (NM_001034850) TTS (NM_001034850) -7111 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 394.167-12 chr7 45710152 45710522 + 1.66667 NA intron (NM_021116, intron 18 of 19) intron (NM_021116, intron 18 of 19) 58681 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 361-5 chr10 68475444 68475821 + 1.66667 NA Intergenic AluJb|SINE|Alu -3511 NR_102264 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 583.334-4 chr5 136134112 136134575 + 1.66667 NA non-coding (NR_026763, exon 1 of 2) non-coding (NR_026763, exon 1 of 2) 547 NR_026763 9597 Hs.59666 NM_022001 ENSG00000164621 SMAD5-AS1 DAMS|SMAD5AS|SMAD5OS SMAD5 antisense RNA 1 ncRNA 278.167-11 chr17 13238212 13238499 + 1.66667 NA Intergenic Intergenic 68405 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 330.334-2 chr15 79425031 79425402 + 1.66667 NA Intergenic AluSx|SINE|Alu -7300 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 317.334-10 chr7 48131975 48132177 + 1.66667 NA Intergenic ERV24_Prim-int|LTR|ERV1 -39382 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 354.834-6 chr8 16325729 16326150 + 1.66667 NA Intergenic Intergenic -133148 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 271.334-11 chr3 65114189 65114506 + 1.66667 NA Intergenic Intergenic -426347 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 247-18 chr17 69621515 69621730 + 1.66667 NA intron (NR_109972, intron 2 of 4) L1MA4A|LINE|L1 27635 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 364.001-3 chr9 34994366 34994836 + 1.66667 NA intron (NM_001135005, intron 2 of 3) intron (NM_001135005, intron 2 of 3) 4311 NM_001135005 25822 Hs.237506 NM_012266 ENSG00000137094 DNAJB5 Hsc40 DnaJ heat shock protein family (Hsp40) member B5 protein-coding 318.834-4 chr2 30727002 30727221 + 1.66667 NA intron (NM_144575, intron 22 of 22) L1MB8|LINE|L1 80335 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 420.667-2 chr15 76179959 76180368 + 1.66667 NA intron (NR_120360, intron 1 of 2) L1MC3|LINE|L1 1323 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 591.333-2 chr8 117236079 117236587 + 1.66667 NA Intergenic MIRc|SINE|MIR 101338 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 194.167-12 chr14 21847394 21847539 + 1.66667 NA Intergenic L1MEf|LINE|L1 -176449 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 490.334-5 chr5 75511685 75512179 + 1.66667 NA promoter-TSS (NM_001130105) promoter-TSS (NM_001130105) 49 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 232.667-27 chr4 36623846 36624122 + 1.66667 NA intron (NR_149124, intron 1 of 4) intron (NR_149124, intron 1 of 4) 17916 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 336.167-5 chr3 184234172 184234466 + 1.66667 NA exon (NM_138345, exon 5 of 19) exon (NM_138345, exon 5 of 19) 903 NM_001320373 90113 Hs.584997 NM_138345 ENSG00000145198 VWA5B2 - von Willebrand factor A domain containing 5B2 protein-coding 256.334-4 chr17 81578327 81578885 + 1.66667 NA intron (NM_001369698, intron 12 of 16) THE1C|LTR|ERVL-MaLR -1173 NR_130139 55666 Hs.464333 NM_017921 ENSG00000182446 NPLOC4 NPL4 NPL4 homolog, ubiquitin recognition factor protein-coding 169.667-37 chr2 108584154 108584714 + 1.66667 NA intron (NM_001193483, intron 1 of 9) MIRc|SINE|MIR -3872 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 358.333-3 chr17 62880962 62881322 + 1.66667 NA Intergenic MSTD|LTR|ERVL-MaLR -63073 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 505.001 chr11 31106813 31107313 + 1.66667 NA intron (NM_001367979, intron 12 of 38) intron (NM_001367979, intron 12 of 38) -114377 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 306.667-6 chr13 75365801 75366074 + 1.66667 NA intron (NM_001286658, intron 1 of 19) intron (NM_001286658, intron 1 of 19) 116231 NM_001286659 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 335.333-9 chr6 63030182 63030495 + 1.66667 NA Intergenic HAL1b|LINE|L1 289639 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 330.501 chr5 133849514 133849882 + 1.66667 NA Intergenic Intergenic -63979 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 199.667-28 chr3 133498677 133498892 + 1.66667 NA Intergenic HAL1b|LINE|L1 -7638 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 346.166-4 chr2 11582878 11583251 + 1.66667 NA intron (NM_014668, intron 7 of 32) intron (NM_014668, intron 7 of 32) 40378 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 216-23 chr18 60361643 60361818 + 1.66667 NA Intergenic Intergenic 11045 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 198.834 chr10 55941925 55942162 + 1.66667 NA Intergenic Intergenic -314101 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 404.333-3 chr15 87802793 87803079 + 1.66667 NA Intergenic Intergenic 143332 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 384.833-6 chr4 30902406 30903002 + 1.66667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 182335 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 259.667 chr10 84267666 84267951 + 1.66667 NA Intergenic L2a|LINE|L2 -12172 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 216.834-14 chr7 53108956 53109185 + 1.66667 NA Intergenic Intergenic 73437 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 222-16 chr15 48877777 48878078 + 1.66667 NA promoter-TSS (NM_014335) promoter-TSS (NM_014335) -207 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 396.667-5 chr4 34414938 34415371 + 1.66667 NA Intergenic Intergenic -145407 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 185.667-7 chr10 18312024 18312192 + 1.66667 NA intron (NM_000724, intron 1 of 12) MamRep1151|LTR?|LTR? -28601 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 262.167-7 chr14 40417731 40418000 + 1.66667 NA Intergenic Intergenic -536846 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 333.5-2 chr11 44621050 44621543 + 1.66667 NA TTS (NM_002231) TTS (NM_002231) 55633 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 169.667-33 chr2 14679002 14679181 + 1.66667 NA Intergenic Intergenic 46374 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 397.001-2 chr3 121644205 121644576 + 1.66667 NA intron (NM_001292041, intron 5 of 12) intron (NM_001292041, intron 5 of 12) 16513 NM_005335 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 353-10 chr20 31846785 31847267 + 1.66667 NA TTS (NM_001320479) TTS (NM_001320479) -1422 NM_004118 2307 Hs.516971 NM_004118 ENSG00000179772 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 209.666-3 chr18 2122953 2123279 + 1.66667 NA Intergenic MIRb|SINE|MIR 448389 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 456 chr1 169354429 169354875 + 1.66667 NA intron (NR_104229, intron 1 of 12) (AT)n|Simple_repeat|Simple_repeat 13145 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 527.333-2 chr16 50355034 50355489 + 1.66667 NA intron (NM_013263, intron 2 of 16) L1ME3Cz|LINE|L1 13727 NM_001173984 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 403.667-7 chr7 118030334 118030706 + 1.66667 NA Intergenic Intergenic -153644 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 277.334 chr10 124441372 124441597 + 1.66667 NA Intergenic AluJb|SINE|Alu 8551 NM_001146340 390010 Hs.290255 NM_001146340 ENSG00000229544 NKX1-2 C10orf121|NKX-1.1|bB238F13.2 NK1 homeobox 2 protein-coding 309.334-11 chr5 86534180 86534543 + 1.66667 NA Intergenic Intergenic -83580 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 304.5-5 chr10 22483446 22483726 + 1.66667 NA Intergenic Intergenic -45657 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 215.333-43 chr7 43065163 43065504 + 1.66667 NA Intergenic Intergenic -47314 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 272.334 chr1 164769437 164769703 + 1.66667 NA intron (NR_038072, intron 3 of 3) intron (NR_038072, intron 3 of 3) 5071 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 209.333-43 chr8 143940293 143940574 + 1.66667 NA promoter-TSS (NM_201384) promoter-TSS (NM_201384) -836 NM_201384 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 291-14 chr18 36379410 36379702 + 1.66667 NA intron (NM_001281740, intron 3 of 28) intron (NM_001281740, intron 3 of 28) 81843 NM_001281740 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 197.167-31 chr5 51432982 51433277 + 1.66667 NA Intergenic Intergenic 49681 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 336.833-7 chr8 120266755 120267142 + 1.66667 NA intron (NM_021110, intron 25 of 47) intron (NM_021110, intron 25 of 47) 141846 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 266.167-3 chr2 75602880 75603171 + 1.66667 NA Intergenic Intergenic -33306 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 373.667-5 chr5 177086754 177087092 + 1.66667 NA promoter-TSS (NM_001354984) promoter-TSS (NM_001354984) 8 NM_001291980 2264 Hs.165950 NM_002011 ENSG00000160867 FGFR4 CD334|JTK2|TKF fibroblast growth factor receptor 4 protein-coding 417 chr15 67836557 67837128 + 1.66667 NA intron (NR_120345, intron 2 of 2) intron (NR_120345, intron 2 of 2) 2037 NR_120345 101929076 Hs.297340 NR_120345 ENSG00000245719 LOC101929076 - uncharacterized LOC101929076 ncRNA 347-14 chr2 78784569 78784959 + 1.66667 NA Intergenic Intergenic 239233 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 280-23 chr9 37594420 37594711 + 1.66667 NA Intergenic Intergenic -1926 NM_001134485 401505 Hs.130774 NM_001001790 ENSG00000175768 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 protein-coding 303.333-22 chr8 82184324 82184668 + 1.66667 NA Intergenic Intergenic -342210 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 390.168 chr12 125413709 125413984 + 1.66667 NA intron (NM_052907, intron 2 of 8) L1MB5|LINE|L1 87230 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 369.833-8 chr8 85469344 85469955 + 1.66667 NA intron (NM_001293675, intron 2 of 5) intron (NM_001293675, intron 2 of 5) -4734 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 251.334-8 chr15 61165946 61166228 + 1.66667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 63215 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 533.334-3 chr9 123385509 123386173 + 1.66667 NA intron (NM_020946, intron 20 of 21) intron (NM_020946, intron 20 of 21) 16762 NR_030332 693186 NR_030332 ENSG00000207991 MIR601 MIRN601|hsa-mir-601 microRNA 601 ncRNA 733.168-2 chr2 17955058 17955857 + 1.66667 NA Intergenic Intergenic 76790 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 247.667-27 chr3 86573307 86573496 + 1.66667 NA Intergenic L1MA2|LINE|L1 91458 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 235-13 chr17 42535861 42536127 + 1.66667 NA promoter-TSS (NM_000263) promoter-TSS (NM_000263) -247 NM_000263 4669 Hs.50727 NM_000263 ENSG00000108784 NAGLU CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD N-acetyl-alpha-glucosaminidase protein-coding 285.334-3 chr21 20976865 20977296 + 1.66667 NA Intergenic Intergenic -21329 NM_001352593 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 196.334-2 chr11 61054780 61054924 + 1.66667 NA Intergenic L1ME1|LINE|L1 -39111 NM_001346456 921 Hs.58685 NM_014207 ENSG00000110448 CD5 LEU1|T1 CD5 molecule protein-coding 186.833-4 chr12 115871857 115872094 + 1.66667 NA Intergenic Intergenic 276679 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 374.001 chr16 85275559 85275997 + 1.66667 NA Intergenic Intergenic -7180 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 233.334-6 chr6 76768268 76768458 + 1.66667 NA Intergenic Intergenic -174740 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 297.501-2 chr12 9634356 9634658 + 1.66667 NA intron (NR_046448, intron 1 of 4) intron (NR_046448, intron 1 of 4) 1088 NR_046448 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 429.167-6 chr17 78176491 78176955 + 1.66667 NA intron (NM_003258, intron 4 of 6) intron (NM_003258, intron 4 of 6) 8178 NM_001363778 9144 Hs.464210 NM_004710 ENSG00000108639 SYNGR2 - synaptogyrin 2 protein-coding 524.333 chr10 82104211 82104831 + 1.66667 NA intron (NR_163253, intron 2 of 10) HAL1b|LINE|L1 128399 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 300.834-10 chr4 1726189 1726675 + 1.66667 NA intron (NM_006342, intron 3 of 15) intron (NM_006342, intron 3 of 15) 4911 NM_006342 10460 Hs.104019 NM_006342 ENSG00000013810 TACC3 ERIC-1|ERIC1 transforming acidic coiled-coil containing protein 3 protein-coding 430.501 chr14 51095292 51095797 + 1.66667 NA 5' UTR (NM_052978, exon 1 of 7) 5' UTR (NM_052978, exon 1 of 7) 160 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 186-48 chr9 87535430 87535648 + 1.66667 NA intron (NM_004938, intron 2 of 25) intron (NM_004938, intron 2 of 25) -17915 NR_146781 100506897 Hs.656160 NR_146781 ENSG00000236709 DAPK1-IT1 - DAPK1 intronic transcript 1 ncRNA 351.5-14 chr7 56074063 56074747 + 1.66667 NA intron (NM_001366649, intron 4 of 7) intron (NM_001366649, intron 4 of 7) 10119 NM_001366648 25870 Hs.279696 NM_015411 ENSG00000129103 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 350.667-13 chr3 21162094 21162532 + 1.66667 NA Intergenic Intergenic -243413 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 266.667-20 chr6 155583543 155583818 + 1.66667 NA Intergenic Intergenic 68836 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 180.834-4 chr5 36393027 36393152 + 1.66667 NA Intergenic Intergenic -91187 NM_145000 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 252.834-8 chr9 130534208 130534387 + 1.66667 NA Intergenic Intergenic 45197 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 553.167-2 chr5 957028 957704 + 1.66667 NA Intergenic Intergenic 39974 NR_104615 100506688 Hs.532063 NM_001242737 ENSG00000215246 LOC100506688 - uncharacterized LOC100506688 ncRNA 527.5-3 chr3 100285413 100285867 + 1.66667 NA intron (NM_001199198, intron 4 of 18) L1MB7|LINE|L1 24648 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 348.667-13 chr6 124021215 124021581 + 1.66667 NA intron (NM_001040214, intron 1 of 6) (TTAA)n|Simple_repeat|Simple_repeat 217533 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 417.667 chr11 94737226 94737584 + 1.66667 NA intron (NR_135096, intron 1 of 6) intron (NR_135096, intron 1 of 6) 2950 NR_135096 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 288.666 chr1 167262871 167263113 + 1.66667 NA intron (NM_001365848, intron 2 of 17) L2c|LINE|L2 42106 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 240.5-8 chr15 58035907 58036129 + 1.66667 NA intron (NM_170696, intron 1 of 11) intron (NM_170696, intron 1 of 11) -21995 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 201.167-19 chr2 104971349 104971491 + 1.66667 NA intron (NR_110603, intron 1 of 2) L2c|LINE|L2 -66649 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 395.667-4 chr14 54534563 54535093 + 1.66667 NA intron (NM_006568, intron 4 of 5) AluJo|SINE|Alu 24922 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 398.668 chr3 64311557 64311825 + 1.66667 NA Intergenic Intergenic -43518 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 368.334-8 chr9 97598623 97598889 + 1.66667 NA intron (NM_001166116, intron 9 of 9) intron (NM_001166116, intron 9 of 9) 34612 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 501.334 chr10 49407547 49408326 + 1.66667 NA Intergenic (TGGA)n|Simple_repeat|Simple_repeat -11847 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 299.334-3 chr17 44543474 44543683 + 1.66667 NA Intergenic Intergenic -13906 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 267.333-15 chr22 25702155 25702414 + 1.66667 NA intron (NM_001362778, intron 12 of 19) intron (NM_001362778, intron 12 of 19) -39904 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 269.166-5 chr6 45033618 45033881 + 1.66667 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 164021 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 191.667-19 chr17 70655427 70655646 + 1.66667 NA Intergenic Intergenic 486001 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 333.834-2 chr14 70681367 70681774 + 1.66667 NA Intergenic MER33|DNA|hAT-Charlie -17128 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 260-17 chr20 48219211 48219513 + 1.66667 NA Intergenic L2a|LINE|L2 -140549 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 898.001 chr19 35702115 35703058 + 1.66667 NA Intergenic CpG -1972 NM_001316902 27033 Hs.99430 NM_014383 ENSG00000011590 ZBTB32 FAXF|FAZF|Rog|TZFP|ZNF538 zinc finger and BTB domain containing 32 protein-coding 268.667-15 chr19 49447227 49447713 + 1.66667 NA intron (NM_017916, intron 5 of 8) intron (NM_017916, intron 5 of 8) 4344 NM_017916 55011 Hs.5245 NM_017916 ENSG00000104872 PIH1D1 NOP17|Pih1 PIH1 domain containing 1 protein-coding 200.333-42 chr7 93498482 93498677 + 1.66667 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) -14560 NR_030164 574442 NR_030164 ENSG00000207656 MIR489 MIRN489|hsa-mir-489|mir-489 microRNA 489 ncRNA 496.501 chr14 57362167 57362820 + 1.66667 NA Intergenic LTR39|LTR|ERV1 -28093 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 287.666-2 chr3 124809837 124810333 + 1.66667 NA intron (NM_002213, intron 8 of 14) L1ME3A|LINE|L1 77280 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 344.167-7 chr18 78426927 78427294 + 1.66667 NA Intergenic Intergenic -433383 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 309.334-2 chr17 60077387 60077609 + 1.66667 NA intron (NM_022070, intron 1 of 19) L1ME3G|LINE|L1 1433 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 316.334-10 chr3 26657376 26657716 + 1.66667 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) 32879 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 231.5-38 chr8 139170377 139170667 + 1.66667 NA Intergenic Intergenic -256481 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 285.667-8 chr14 46388954 46389176 + 1.66667 NA intron (NR_102702, intron 3 of 3) L1MA6|LINE|L1 -82294 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 631.668 chr10 87533535 87534017 + 1.66667 NA intron (NM_001178118, intron 4 of 4) intron (NM_001178118, intron 4 of 4) 25943 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 383.5-2 chr2 71871521 71872206 + 1.66667 NA Intergenic Intergenic 275999 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 351.667-9 chr2 73014683 73014930 + 1.66667 NA intron (NR_138476, intron 6 of 14) L1M5|LINE|L1 44366 NM_001330407 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 173 chr1 26396424 26396661 + 1.66667 NA Intergenic MIR|SINE|MIR -14275 NM_024674 79727 Hs.86154 NM_024674 ENSG00000131914 LIN28A CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A lin-28 homolog A protein-coding 282.5-16 chr7 19538612 19538871 + 1.66667 NA Intergenic Intergenic 166695 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 503.668 chr6 118552506 118552841 + 1.66667 NA intron (NM_002667, intron 1 of 1) intron (NM_002667, intron 1 of 1) 4377 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 505.334 chr17 75515506 75515981 + 1.66667 NA promoter-TSS (NM_207346) promoter-TSS (NM_207346) -206 NM_020753 57513 Hs.274408 NM_020753 ENSG00000177303 CASKIN2 ANKS5B CASK interacting protein 2 protein-coding 327-13 chr2 163601510 163601799 + 1.66667 NA TTS (NM_001321825) TTS (NM_001321825) 134354 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 281.667-16 chr22 23133247 23133435 + 1.66667 NA intron (NM_014433, intron 4 of 6) L1ME3A|LINE|L1 8649 NM_014433 27156 Hs.526920 NM_014433 ENSG00000100218 RSPH14 RTDR1 radial spoke head 14 homolog protein-coding 235.334-10 chr7 3482807 3482974 + 1.66667 NA intron (NM_152744, intron 1 of 44) MIR|SINE|MIR 181638 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 248 chr1 80815814 80816018 + 1.66667 NA Intergenic L2c|LINE|L2 174629 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 228.167-12 chr14 70985152 70985353 + 1.66667 NA intron (NM_001308160, intron 6 of 33) AluSq|SINE|Alu 77793 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 267-10 chr12 15293152 15293380 + 1.66667 NA Intergenic Intergenic -29242 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 238.334-10 chr16 85529658 85529917 + 1.66667 NA Intergenic Intergenic -81622 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 349.334 chr10 21191381 21191654 + 1.66667 NA Intergenic Intergenic 17215 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 348.5-8 chr11 46036546 46036803 + 1.66667 NA intron (NR_147890, intron 5 of 18) L1M5|LINE|L1 84145 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 191.333-45 chr9 74538395 74538603 + 1.66667 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -39946 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA 279.167-13 chr7 41226228 41226462 + 1.66667 NA Intergenic LTR54|LTR|ERV1 124741 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 226-42 chr9 34738622 34738958 + 1.66667 NA Intergenic MLT1L|LTR|ERVL-MaLR -9302 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 263.333-25 chr7 114022289 114022639 + 1.66667 NA Intergenic Intergenic -63863 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 360.667-13 chr8 120409787 120410321 + 1.66667 NA intron (NM_014078, intron 6 of 6) intron (NM_014078, intron 6 of 6) 35096 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 344.501 chr7 23006673 23006939 + 1.66667 NA intron (NM_032581, intron 1 of 10) intron (NM_032581, intron 1 of 10) 7324 NM_001363467 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 188.667-8 chr11 35586177 35586550 + 1.66667 NA Intergenic Intergenic -32097 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 264.501-4 chr6 104222841 104223041 + 1.66667 NA Intergenic L1MEf|LINE|L1 636605 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 209.167-12 chr13 34723466 34723650 + 1.66667 NA Intergenic Intergenic -82873 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 447.667-10 chr8 101158975 101159622 + 1.66667 NA Intergenic L2c|LINE|L2 46375 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 271.334-9 chr2 158218662 158218870 + 1.66667 NA intron (NR_038850, intron 4 of 4) intron (NR_038850, intron 4 of 4) 52116 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 169.833-41 chr8 75301492 75301734 + 1.66667 NA Intergenic MIR|SINE|MIR -22724 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 362.334-5 chr4 41957533 41957866 + 1.66667 NA 3' UTR (NM_018126, exon 7 of 7) 3' UTR (NM_018126, exon 7 of 7) 22270 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 211.834-7 chr2 166288836 166289011 + 1.66667 NA intron (NM_001365536, intron 9 of 26) intron (NM_001365536, intron 9 of 26) 87021 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 335.667-9 chr15 89063394 89063672 + 1.66667 NA Intergenic Intergenic -24923 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 235.667-12 chr14 85613025 85613256 + 1.66667 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 79791 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 185-40 chr6 98054493 98054707 + 1.66667 NA Intergenic Intergenic 30069 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 225.334-9 chr9 36262264 36262449 + 1.66667 NA intron (NM_001128227, intron 1 of 11) intron (NM_001128227, intron 1 of 11) -3908 NM_001190384 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 408.001-2 chr17 33849981 33850548 + 1.66667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 306542 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 295.834-8 chr4 53510435 53510737 + 1.66667 NA intron (NM_001126328, intron 2 of 10) intron (NM_001126328, intron 2 of 10) 10509 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 280-7 chr13 96697633 96697951 + 1.66667 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 270563 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 321.5-16 chr3 32665453 32666010 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -19457 NM_001256741 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 297.667-11 chr17 47665643 47665831 + 1.66667 NA intron (NM_002265, intron 9 of 21) intron (NM_002265, intron 9 of 21) 14672 NM_001276453 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 336.333-7 chr3 179582950 179583283 + 1.66667 NA intron (NM_004301, intron 11 of 13) MER5B|DNA|hAT-Charlie 20190 NM_004301 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 196.834-2 chr1 171265974 171266172 + 1.66667 NA intron (NM_001282694, intron 2 of 7) Charlie10|DNA|hAT-Charlie 8150 NM_001282692 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 491.667-4 chr4 74227544 74227993 + 1.66667 NA intron (NM_001144978, intron 6 of 7) L2a|LINE|L2 69650 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 222-25 chr5 60286766 60286984 + 1.66667 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 85788 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 212.5-9 chr11 3930985 3931232 + 1.66667 NA intron (NM_001277962, intron 1 of 12) L2b|LINE|L2 75046 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 639.834 chr4 112327829 112328270 + 1.66667 NA intron (NM_001102406, intron 2 of 15) intron (NM_001102406, intron 2 of 15) 30680 NM_025144 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 403.334-6 chr6 114748076 114748513 + 1.66667 NA Intergenic Intergenic -685417 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 292-21 chr5 16966109 16966300 + 1.66667 NA Intergenic AluSg|SINE|Alu -29916 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 253-8 chr12 31492236 31492407 + 1.66667 NA intron (NM_144973, intron 2 of 20) intron (NM_144973, intron 2 of 20) -97602 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 479.001 chr11 76208585 76209153 + 1.66667 NA Intergenic CpG-4722 -2367 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 299.667-6 chr2 149991566 149991840 + 1.66667 NA Intergenic Intergenic -132512 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 417.501 chr12 53114260 53114555 + 1.66667 NA intron (NM_003578, intron 5 of 14) intron (NM_003578, intron 5 of 14) 10921 NM_003578 8435 Hs.656544 NM_003578 ENSG00000167780 SOAT2 ACACT2|ACAT2|ARGP2 sterol O-acyltransferase 2 protein-coding 423.333-5 chr13 22672254 22672684 + 1.66667 NA Intergenic Intergenic 225712 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 282.667-18 chr20 5178549 5178964 + 1.66667 NA intron (NM_003818, intron 4 of 12) intron (NM_003818, intron 4 of 12) 51748 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 370.834-7 chr8 85999645 86000295 + 1.66667 NA Intergenic Intergenic 69698 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 355.834-6 chr18 4434052 4434306 + 1.66667 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 21087 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 314.5 chr1 45040043 45040464 + 1.66667 NA intron (NM_020883, intron 7 of 13) MIRc|SINE|MIR 27999 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 256.666-3 chr2 174990420 174990677 + 1.66667 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 14705 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 370.334-8 chr4 106898576 106899070 + 1.66667 NA Intergenic Intergenic 137490 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 447.667-8 chr6 24766945 24767324 + 1.66667 NA Intergenic L1MC5a|LINE|L1 -7803 NM_001251989 51053 Hs.234896 NM_015895 ENSG00000112312 GMNN Gem|MGORS6 geminin DNA replication inhibitor protein-coding 358.667-10 chr6 44304936 44305345 + 1.66667 NA exon (NM_020745, exon 11 of 22) exon (NM_020745, exon 11 of 22) -7442 NM_182539 202500 Hs.189183 NM_182539 ENSG00000146221 TCTE1 D6S46|DRC5|FAP155 t-complex-associated-testis-expressed 1 protein-coding 333.667 chr1 65268474 65268760 + 1.66667 NA intron (NM_014787, intron 1 of 18) MIRb|SINE|MIR 3868 NM_014787 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 1001.83 chr17 32658718 32659883 + 1.66667 NA exon (NM_001303279, exon 17 of 22) exon (NM_001303279, exon 17 of 22) 172307 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 350.833-6 chr4 103607754 103608146 + 1.66667 NA intron (NM_001059, intron 3 of 4) L2|LINE|L2 112035 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 191.667-23 chr2 42332987 42333110 + 1.66667 NA TTS (NM_019063) TTS (NM_019063) 26990 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 322.667-14 chr2 228110187 228110504 + 1.66667 NA intron (NM_030623, intron 2 of 10) intron (NM_030623, intron 2 of 10) 71300 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 439.667 chr16 84601009 84601339 + 1.66667 NA intron (NM_021149, intron 2 of 3) Tigger15a|DNA|TcMar-Tigger 16904 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 226.167-9 chr14 67570652 67571072 + 1.66667 NA intron (NM_020715, intron 9 of 28) AluSc|SINE|Alu 29406 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 207-11 chr16 73553902 73554135 + 1.66667 NA Intergenic Intergenic 167213 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 371.167-2 chr11 57879935 57880550 + 1.66667 NA Intergenic Intergenic 118440 NM_001085459 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 600-6 chr4 123772574 123773280 + 1.66667 NA intron (NR_027105, intron 3 of 5) intron (NR_027105, intron 3 of 5) -1337 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 526.167 chr1 21216802 21217422 + 1.66667 NA TTS (NM_001397) TTS (NM_001397) -40215 NM_001198801 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 232-16 chr17 51910308 51910459 + 1.66667 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 248331 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 534.167-4 chr3 8239673 8240446 + 1.66667 NA intron (NR_033378, intron 3 of 3) MIR3|SINE|MIR -223752 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 181-4 chr10 93858839 93859263 + 1.66667 NA Intergenic Intergenic -34927 NR_144335 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 332.334-3 chr11 93619461 93619684 + 1.66667 NA Intergenic Intergenic -42110 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 300-22 chr8 72191460 72191711 + 1.66667 NA Intergenic Helitron1Na_Mam|RC|Helitron 60049 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 285.833-4 chr14 33232992 33233300 + 1.66667 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 294267 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 419.501 chr2 209207514 209208143 + 1.66667 NA Intergenic Intergenic -216219 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 591.5-2 chr11 34174046 34174756 + 1.66667 NA intron (NM_145804, intron 3 of 16) intron (NM_145804, intron 3 of 16) 68772 NM_024662 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 398-8 chr18 63503860 63504179 + 1.66667 NA 3' UTR (NM_002639, exon 7 of 7) 3' UTR (NM_002639, exon 7 of 7) 27061 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 308.334-6 chr8 98831619 98831933 + 1.66667 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) -6088 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 242.667-5 chr11 75626461 75626726 + 1.66667 NA intron (NM_207577, intron 1 of 2) intron (NM_207577, intron 1 of 2) 41841 NM_033063 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 364.667-7 chr15 56328097 56328330 + 1.66667 NA Intergenic L1PA2|LINE|L1 -37211 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 271-23 chr5 141089132 141089422 + 1.66667 NA Intergenic Intergenic -5338 NM_018936 56133 Hs.533023 NM_018936 ENSG00000112852 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 245.5-13 chr2 78547546 78547696 + 1.66667 NA intron (NR_136312, intron 1 of 3) intron (NR_136312, intron 1 of 3) 2090 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 426.667 chr13 67073024 67073411 + 1.66667 NA intron (NM_001318372, intron 2 of 4) MER5A|DNA|hAT-Charlie 82331 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 303.333-11 chr4 57812351 57812701 + 1.66667 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 386654 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 250.501-2 chr18 77459206 77459502 + 1.66667 NA Intergenic Intergenic 209506 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 334.167-9 chr9 107213216 107213708 + 1.66667 NA Intergenic Intergenic -69817 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 275.333 chr1 171220052 171220242 + 1.66667 NA Intergenic HERVIP10B3-int|LTR|ERV1 -28324 NM_001282694 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 280-20 chr6 57180095 57180328 + 1.66667 NA intron (NM_004282, intron 1 of 2) intron (NM_004282, intron 1 of 2) 7885 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 187-17 chr2 54657543 54657786 + 1.66667 NA intron (NM_178313, intron 28 of 30) MER33|DNA|hAT-Charlie -67348 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 353.834 chr1 18299874 18300121 + 1.66667 NA intron (NM_032880, intron 3 of 9) FLAM_C|SINE|Alu -180933 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 339.167-7 chr20 63973801 63974022 + 1.66667 NA TTS (NM_080621) TTS (NM_080621) -3981 NM_020713 57473 Hs.740578 NM_020713 ENSG00000196700 ZNF512B GM632 zinc finger protein 512B protein-coding 358.666-7 chr4 48780328 48780708 + 1.66667 NA promoter-TSS (NM_015030) promoter-TSS (NM_015030) -219 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 184.667-34 chr20 673164 673365 + 1.66667 NA intron (NM_033129, intron 1 of 1) intron (NM_033129, intron 1 of 1) 2538 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 413.168 chr8 131115009 131115304 + 1.66667 NA Intergenic L1MA1|LINE|L1 -74247 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 314.334-9 chr8 144184999 144185369 + 1.66667 NA intron (NM_001099281, intron 6 of 11) intron (NM_001099281, intron 6 of 11) 36539 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 264.167-19 chr5 160296947 160297159 + 1.66667 NA intron (NR_131769, intron 2 of 7) MIR|SINE|MIR 15511 NM_001308173 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 382.667-4 chr10 96640534 96641090 + 1.66667 NA intron (NM_152309, intron 8 of 16) AluJr|SINE|Alu -53800 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 298.667-7 chr14 60678381 60678683 + 1.66667 NA Intergenic Intergenic -29055 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 187-20 chr2 163768134 163768279 + 1.66667 NA Intergenic Intergenic -32198 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 310.333 chr1 190329375 190329646 + 1.66667 NA intron (NM_199051, intron 2 of 7) L1PA16|LINE|L1 146500 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 223.667-17 chr14 66014764 66015103 + 1.66667 NA Intergenic Intergenic -471438 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 243.667-18 chr18 46495660 46495910 + 1.66667 NA intron (NM_001145472, intron 19 of 23) intron (NM_001145472, intron 19 of 23) 23301 NM_001173129 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 324-11 chr22 39135080 39135504 + 1.66667 NA intron (NM_001346743, intron 4 of 5) intron (NM_001346743, intron 4 of 5) 17388 NM_001346743 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 421.001-3 chr8 133102705 133103019 + 1.66667 NA promoter-TSS (NM_001282964) promoter-TSS (NM_001282964) -260 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 243.334-12 chr7 6127709 6127893 + 1.66667 NA intron (NM_032172, intron 3 of 17) L1MDa|LINE|L1 22852 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 633.667-6 chr2 176097464 176098380 + 1.66667 NA Intergenic Intergenic -1880 NM_021193 3238 Hs.450028 NM_021193 ENSG00000170178 HOXD12 HOX4H homeobox D12 protein-coding 235.667-17 chr2 168666860 168667153 + 1.66667 NA intron (NM_001256126, intron 4 of 10) intron (NM_001256126, intron 4 of 10) 84063 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 197.5-17 chr2 44291733 44291866 + 1.66667 NA intron (NM_000341, intron 4 of 9) intron (NM_000341, intron 4 of 9) 16319 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 326.667-11 chrX 96145950 96146163 + 1.66667 NA Intergenic L1PA15|LINE|L1 191846 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 286.667-6 chr11 10792583 10792836 + 1.66667 NA Intergenic G-rich|Low_complexity|Low_complexity 8899 NR_004403 692223 Hs.723086 NR_004403 ENSG00000238622 SNORD97 U97 small nucleolar RNA, C/D box 97 snoRNA 171.667-45 chr4 92533332 92533499 + 1.66667 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 229016 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 189.167-12 chr11 132807836 132808050 + 1.66667 NA intron (NM_001319104, intron 1 of 6) L1M4a1|LINE|L1 135694 NM_002545 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 623.667-2 chr21 35940171 35940831 + 1.66667 NA Intergenic Intergenic 54056 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 252-8 chr10 54363860 54364123 + 1.66667 NA intron (NM_001354411, intron 5 of 34) AluSp|SINE|Alu -122239 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 384.667-2 chr10 32022861 32023096 + 1.66667 NA exon (NM_004521, exon 16 of 26) exon (NM_004521, exon 16 of 26) 33447 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 474.834 chr11 8914354 8914831 + 1.66667 NA intron (NM_020642, intron 3 of 5) intron (NM_020642, intron 3 of 5) 3403 NM_001206648 56672 Hs.131180 NM_020642 ENSG00000166452 AKIP1 BCA3|C11orf17 A-kinase interacting protein 1 protein-coding 584.668 chr17 43574788 43575649 + 1.66667 NA Intergenic Intergenic -28878 NM_001079675 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 538 chr1 226437914 226438507 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -30117 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 479.668 chr7 150781177 150781569 + 1.66667 NA Intergenic Intergenic 18991 NM_001101312 28959 Hs.647090 NM_014020 ENSG00000106565 TMEM176B LR8|MS4B2 transmembrane protein 176B protein-coding 430.834 chr18 2454771 2455063 + 1.66667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 116588 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 312-22 chr8 84264813 84265205 + 1.66667 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 80343 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 188.667-41 chr5 154271624 154271807 + 1.66667 NA intron (NM_198321, intron 1 of 11) intron (NM_198321, intron 1 of 11) -75391 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 407.334-5 chr2 171590373 171590830 + 1.66667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 68127 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 325-5 chr13 50084962 50085193 + 1.66667 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 2908 NR_002605 10301 Hs.591229 NM_005887 ENSG00000176124 DLEU1 BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 deleted in lymphocytic leukemia 1 ncRNA 359 chr1 4841026 4841298 + 1.66667 NA Intergenic MLT1E1|LTR|ERVL-MaLR 186553 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 169.5-10 chr11 68030462 68030666 + 1.66667 NA promoter-TSS (NM_002496) promoter-TSS (NM_002496) -117 NM_002496 4728 Hs.90443 NM_002496 ENSG00000110717 NDUFS8 CI-23k|CI23KD|MC1DN2|TYKY NADH:ubiquinone oxidoreductase core subunit S8 protein-coding 371.667-3 chr13 84009118 84009540 + 1.66667 NA Intergenic L1M4|LINE|L1 -126855 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 183.834 chr14 44738055 44738243 + 1.66667 NA Intergenic Intergenic 60977 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 231.667-15 chr21 20059963 20060180 + 1.66667 NA Intergenic L1MB8|LINE|L1 -160316 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 317.5-15 chr5 61040721 61041327 + 1.66667 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 95819 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 247.667-18 chr2 35680301 35680521 + 1.66667 NA Intergenic Charlie10a|DNA|hAT-Charlie 209006 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 266.501-3 chr7 24060714 24060878 + 1.66667 NA Intergenic L1PA10|LINE|L1 -223394 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 451.667-4 chr7 21767430 21767884 + 1.66667 NA intron (NM_001277115, intron 55 of 81) intron (NM_001277115, intron 55 of 81) 178242 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 417.833-5 chr2 49286102 49286482 + 1.66667 NA Intergenic Intergenic -131765 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 226.667 chr1 27610356 27610542 + 1.66667 NA Intergenic MIRb|SINE|MIR -6955 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 167-25 chr22 39363066 39363220 + 1.66667 NA intron (NM_145731, intron 1 of 3) L2b|LINE|L2 -1027 NM_145738 9145 Hs.216226 NM_004711 ENSG00000100321 SYNGR1 - synaptogyrin 1 protein-coding 286.834-3 chr8 117225425 117225684 + 1.66667 NA Intergenic L2c|LINE|L2 90559 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 239-8 chr14 57761393 57761603 + 1.66667 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 103501 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 293.001-3 chr6 40436045 40436221 + 1.66667 NA intron (NM_020737, intron 1 of 2) MER33|DNA|hAT-Charlie 57796 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 380.001 chr20 18264194 18264610 + 1.66667 NA Intergenic L1MB5|LINE|L1 -23826 NM_001283005 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 615.333-5 chr9 117556207 117557054 + 1.66667 NA Intergenic Intergenic -91976 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 357.334-4 chr5 147615961 147616208 + 1.66667 NA intron (NM_001282282, intron 18 of 20) L2|LINE|L2 56090 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 215-13 chr15 78507340 78507779 + 1.66667 NA promoter-TSS (NM_001013619) promoter-TSS (NM_001013619) -5 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 415 chr13 64533605 64534062 + 1.66667 NA Intergenic Intergenic -457822 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 323.666-6 chr3 20091709 20092038 + 1.66667 NA intron (NM_003884, intron 2 of 17) MADE1|DNA|TcMar-Mariner -45692 NR_036086 100422901 NR_036086 ENSG00000266745 MIR3135A MIR3135|hsa-mir-3135a microRNA 3135a ncRNA 270.667-12 chr20 54667044 54667466 + 1.66667 NA Intergenic LTR48B|LTR|ERV1 191662 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 436.501 chr18 73841838 73842255 + 1.66667 NA Intergenic L1ME4b|LINE|L1 305788 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 207.667-38 chr5 137404906 137405066 + 1.66667 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 94340 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 345-10 chr2 7836337 7836583 + 1.66667 NA Intergenic Charlie17|DNA|hAT-Charlie 63195 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 388 chr1 205728451 205728779 + 1.66667 NA intron (NM_022731, intron 2 of 6) intron (NM_022731, intron 2 of 6) 21567 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 278.5-17 chr3 111184171 111184347 + 1.66667 NA intron (NM_001243288, intron 7 of 8) L1ME2|LINE|L1 112443 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 319-16 chr7 3436467 3436893 + 1.66667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 135428 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 305.334-9 chr2 58638672 58639006 + 1.66667 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 118086 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 232.5-17 chr20 4573927 4574101 + 1.66667 NA Intergenic Intergenic -112442 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 279.334 chr1 93597182 93597450 + 1.66667 NA intron (NR_034091, intron 2 of 3) intron (NR_034091, intron 2 of 3) 5348 NR_034091 100129046 Hs.729244 NR_034091 LOC100129046 - uncharacterized LOC100129046 ncRNA 330.833-13 chr5 82166081 82166457 + 1.66667 NA intron (NM_031482, intron 4 of 7) intron (NM_031482, intron 4 of 7) 112085 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 217.5-19 chr5 42583473 42583694 + 1.66667 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 17719 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 475.334 chr10 45571091 45571438 + 1.66667 NA intron (NM_145021, intron 1 of 6) LTR7|LTR|ERV1 23642 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 387.834-4 chr3 50189524 50189909 + 1.66667 NA TTS (NM_001318800) TTS (NM_001318800) -1894 NM_000172 2779 Hs.517978 NM_000172 ENSG00000114349 GNAT1 CSNB1G|CSNBAD3|GBT1|GNATR G protein subunit alpha transducin 1 protein-coding 174-41 chr6 16713104 16713376 + 1.66667 NA intron (NM_000332, intron 3 of 8) intron (NM_000332, intron 3 of 8) 46944 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 211-36 chr4 55453532 55453776 + 1.66667 NA intron (NM_004898, intron 14 of 22) intron (NM_004898, intron 14 of 22) 57697 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 183-44 chr7 73424770 73424981 + 1.66667 NA Intergenic AluSg|SINE|Alu -8903 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 172.5-42 chr5 65969253 65969402 + 1.66667 NA intron (NM_001253697, intron 1 of 25) intron (NM_001253697, intron 1 of 25) -23754 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 168.333-40 chr20 7250234 7250400 + 1.66667 NA intron (NR_110609, intron 1 of 7) intron (NR_110609, intron 1 of 7) 3885 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 394.001-5 chr18 28012872 28013197 + 1.66667 NA intron (NM_001308176, intron 2 of 14) intron (NM_001308176, intron 2 of 14) 23607 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 390.501-2 chrX 84046148 84046577 + 1.66667 NA Intergenic L1PA15-16|LINE|L1 141573 NM_001330512 27330 Hs.234478 NM_014496 ENSG00000072133 RPS6KA6 PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6 ribosomal protein S6 kinase A6 protein-coding 258.333-6 chr15 60056581 60056909 + 1.66667 NA Intergenic Intergenic 52434 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 175-14 chr13 101470910 101471053 + 1.66667 NA intron (NM_001271755, intron 2 of 9) intron (NM_001271755, intron 2 of 9) 18306 NM_004791 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 536.167-4 chr9 83920522 83921462 + 1.66667 NA intron (NM_001354071, intron 1 of 16) CpG 440 NM_001354071 55582 Hs.697514 NM_017576 ENSG00000165115 KIF27 - kinesin family member 27 protein-coding 186.667-52 chr6 54228284 54228503 + 1.66667 NA intron (NM_138569, intron 10 of 12) intron (NM_138569, intron 10 of 12) -80048 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 172-25 chr19 38316132 38316306 + 1.66667 NA promoter-TSS (NM_001039673) promoter-TSS (NM_001039673) -272 NM_001145463 90522 Hs.280741 NM_033557 ENSG00000167645 YIF1B FinGER8 Yip1 interacting factor homolog B, membrane trafficking protein protein-coding 213.666-2 chr11 83105749 83105969 + 1.66667 NA Intergenic L1ME3B|LINE|L1 33793 NR_038903 100506233 Hs.503429 NR_038903 ENSG00000246067 RAB30-DT RAB30-AS1 RAB30 divergent transcript ncRNA 311.334-5 chr17 49806708 49807048 + 1.66667 NA intron (NM_001199155, intron 5 of 13) intron (NM_001199155, intron 5 of 13) 18197 NM_001199158 11143 Hs.21907 NM_007067 ENSG00000136504 KAT7 HBO1|HBOA|MYST2|ZC2HC7 lysine acetyltransferase 7 protein-coding 584.167 chr15 90400656 90401275 + 1.66667 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 12723 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 321.001-2 chr14 43813347 43813561 + 1.66667 NA Intergenic Intergenic 693829 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 232.334-8 chr2 120640444 120640600 + 1.66667 NA Intergenic HAL1|LINE|L1 -95346 NM_001371271 291.333-20 chr8 79319046 79319255 + 1.66667 NA Intergenic Intergenic -13038 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 445.666 chr16 50037559 50037880 + 1.66667 NA TTS (NM_001281789) TTS (NM_001281789) 12513 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 660.833 chr14 22559379 22560135 + 1.66667 NA Intergenic Intergenic -2695 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 627.333 chr8 72943698 72944531 + 1.66667 NA Intergenic Intergenic -64750 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 266.834 chr1 24542039 24542377 + 1.66667 NA intron (NR_109781, intron 2 of 2) Charlie15a|DNA|hAT-Charlie 13816 NR_109781 100506985 Hs.607088 NR_109781 NCMAP-DT - NCMAP divergent transcript ncRNA 228.333-29 chr7 92752107 92752364 + 1.66667 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 81724 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 414.501 chr1 173166168 173166706 + 1.66667 NA Intergenic L1MA9|LINE|L1 39095 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 253.333-13 chr19 15379767 15380147 + 1.66667 NA promoter-TSS (NM_005858) promoter-TSS (NM_005858) -170 NM_005858 10270 Hs.594496 NM_005858 ENSG00000105127 AKAP8 AKAP 95|AKAP-8|AKAP-95|AKAP95 A-kinase anchoring protein 8 protein-coding 207.5-19 chr18 52742585 52742745 + 1.66667 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 402468 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 245.834-2 chr11 61939671 61939849 + 1.66667 NA Intergenic AluJo|SINE|Alu -10061 NM_001363592 7439 Hs.524910 NM_004183 ENSG00000167995 BEST1 ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2 bestrophin 1 protein-coding 235.666 chr10 72632479 72632695 + 1.66667 NA Intergenic L1MC4|LINE|L1 -6396 NM_001363513 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 362-14 chr5 56099989 56100285 + 1.66667 NA 3' UTR (NM_024669, exon 12 of 12) 3' UTR (NM_024669, exon 12 of 12) 104970 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 394-10 chr5 112491240 112491708 + 1.66667 NA Intergenic Intergenic 71891 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 211.667-13 chr19 27913928 27914067 + 1.66667 NA intron (NR_146735, intron 4 of 7) L1MB7|LINE|L1 -120057 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 503.334-3 chr5 217702 218127 + 1.66667 NA promoter-TSS (NM_004168) promoter-TSS (NM_004168) 239 NM_145265 133957 Hs.294145 NM_145265 ENSG00000164366 CCDC127 - coiled-coil domain containing 127 protein-coding 263.667-19 chr5 120347654 120347878 + 1.66667 NA Intergenic LTR16D|LTR|ERVL -116512 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 224.334-5 chr22 22149681 22149921 + 1.66667 NA Intergenic Intergenic -94985 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 394.167-4 chr10 62431144 62431457 + 1.66667 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -56173 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 182.5-24 chr2 164080700 164080861 + 1.66667 NA Intergenic Intergenic -344772 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 320.834-10 chr7 19256178 19256727 + 1.66667 NA Intergenic Intergenic -111031 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 353-4 chr16 12144028 12144328 + 1.66667 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 167444 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 281.5-4 chr11 102294119 102294412 + 1.66667 NA Intergenic Intergenic -23219 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 313.001-5 chr8 73584770 73585190 + 1.66667 NA intron (NM_001164384, intron 9 of 10) intron (NM_001164384, intron 9 of 10) 161860 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 837.5 chr9 73022660 73023563 + 1.66667 NA Intergenic Intergenic -70058 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 169-40 chr5 16884280 16884442 + 1.66667 NA intron (NM_012334, intron 1 of 40) AluJb|SINE|Alu 51927 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 288.667 chr10 6648434 6648658 + 1.66667 NA Intergenic Tigger9a|DNA|TcMar-Tigger 13476 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 240-22 chr15 80952640 80952933 + 1.66667 NA intron (NR_126328, intron 1 of 2) intron (NR_126328, intron 1 of 2) 37033 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 352.834-11 chr9 97424975 97425360 + 1.66667 NA intron (NM_001302884, intron 1 of 15) L1ME1|LINE|L1 13071 NM_001302884 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 209.667-16 chr18 43040024 43040202 + 1.66667 NA intron (NM_001272077, intron 1 of 5) L2c|LINE|L2 75572 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 339.001 chr4 135363037 135363369 + 1.66667 NA Intergenic Intergenic -239644 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 329.501-4 chr7 44460655 44460864 + 1.66667 NA intron (NM_015332, intron 2 of 5) intron (NM_015332, intron 2 of 5) 29899 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 220.167-17 chr17 39592478 39592839 + 1.66667 NA Intergenic Intergenic 15262 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 240.833-13 chr8 74342649 74342882 + 1.66667 NA Intergenic Intergenic -7618 NM_001040875 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 470.834-4 chr3 77321250 77321835 + 1.66667 NA intron (NM_001290039, intron 2 of 26) AluJo|SINE|Alu 223530 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 203-32 chr6 69154353 69154523 + 1.66667 NA intron (NM_001704, intron 17 of 31) L2|LINE|L2 519156 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 651.5 chr18 13710137 13710997 + 1.66667 NA intron (NM_001098801, intron 1 of 4) LTR8B|LTR|ERV1 15991 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 388.834-2 chr5 177404111 177404527 + 1.66667 NA exon (NM_000505, exon 9 of 14) exon (NM_000505, exon 9 of 14) -3658 NM_001029886 345456 Hs.130196 NM_001029886 ENSG00000196570 PFN3 - profilin 3 protein-coding 249-15 chr19 28560186 28560455 + 1.66667 NA intron (NR_110759, intron 5 of 9) L1MC1|LINE|L1 -46368 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 352.168 chr11 33110001 33110265 + 1.66667 NA intron (NM_001326, intron 3 of 20) L1MEj|LINE|L1 33983 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 545.333-4 chr6 45045730 45046248 + 1.66667 NA intron (NM_001350327, intron 2 of 9) L1M4|LINE|L1 151781 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 240-48 chr5 35516702 35517088 + 1.66667 NA Intergenic Intergenic -100968 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 333.5-9 chr16 63455428 63455907 + 1.66667 NA Intergenic L1ME1|LINE|L1 -1419229 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 611.666 chr16 50666301 50667094 + 1.66667 NA 3' UTR (NM_153337, exon 4 of 4) 3' UTR (NM_153337, exon 4 of 4) -2158 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 481.667-2 chr7 95511647 95512128 + 1.66667 NA intron (NM_145872, intron 2 of 2) MIRb|SINE|MIR 25944 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 170.667-9 chr15 53191736 53191895 + 1.66667 NA Intergenic Intergenic 75450 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 191.667-4 chr1 180670685 180670870 + 1.66667 NA intron (NR_137330, intron 1 of 12) L1M4c|LINE|L1 38755 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 376.334-3 chr2 119028152 119028580 + 1.66667 NA Intergenic L3|LINE|CR1 86197 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 173.666 chr2 31374642 31374881 + 1.66667 NA intron (NM_000379, intron 15 of 35) intron (NM_000379, intron 15 of 35) 39981 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 410-6 chr18 32289275 32289608 + 1.66667 NA intron (NM_001242409, intron 3 of 5) (ATTT)n|Simple_repeat|Simple_repeat 99402 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 373.334-2 chr10 18667177 18667491 + 1.66667 NA intron (NM_178815, intron 2 of 5) intron (NM_178815, intron 2 of 5) 7903 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 397-14 chr3 181782302 181782696 + 1.66667 NA Intergenic HAL1|LINE|L1 70574 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 465-6 chr6 714685 715118 + 1.66667 NA Intergenic Intergenic -21760 NR_073064 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 199.167-22 chr3 195182804 195183003 + 1.66667 NA intron (NM_152531, intron 2 of 3) intron (NM_152531, intron 2 of 3) 35032 NR_102710 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 473.5-7 chr9 35510895 35511553 + 1.66667 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) 21113 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 286-3 chr11 69041891 69042282 + 1.66667 NA Intergenic MER113A|DNA|hAT-Charlie -6846 NM_139075 219931 Hs.131851 NM_139075 ENSG00000162341 TPCN2 SHEP10|TPC2 two pore segment channel 2 protein-coding 350.833 chr1 169408025 169408371 + 1.66667 NA intron (NM_001300969, intron 4 of 5) L1PA7|LINE|L1 19276 NM_001300969 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 283.667-11 chr5 163499189 163499502 + 1.66667 NA Intergenic L1M5|LINE|L1 -3719 NM_182796 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 175.167-15 chr15 71747548 71747727 + 1.66667 NA intron (NM_001286429, intron 7 of 11) LTR44|LTR|ERV1 -56098 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 303.834-4 chr20 54257329 54257524 + 1.66667 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 49339 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 325-13 chr6 49850929 49851395 + 1.66667 NA intron (NM_170609, intron 3 of 6) intron (NM_170609, intron 3 of 6) 15373 NM_001131 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 302.167-13 chr4 45749725 45750110 + 1.66667 NA Intergenic Intergenic 374137 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 347.167-4 chr10 117958196 117958468 + 1.66667 NA Intergenic L1MD2|LINE|L1 -88489 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 476.334 chr1 62481579 62481931 + 1.66667 NA intron (NM_001271999, intron 42 of 48) L3|LINE|CR1 44706 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 300-12 chr22 40533628 40533875 + 1.66667 NA promoter-TSS (NM_001318139) promoter-TSS (NM_001318139) 76 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 285.999-2 chr22 26322654 26323054 + 1.66667 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -106406 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 450.834-2 chr19 44552246 44552721 + 1.66667 NA intron (NR_027754, intron 1 of 7) L1MD2|LINE|L1 4434 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 348.001-2 chr17 12544416 12544629 + 1.66667 NA Intergenic L1MC3|LINE|L1 -5446 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 203.334-11 chr8 101727861 101728003 + 1.66667 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 63037 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 304.333-3 chr10 26468074 26468492 + 1.66667 NA intron (NM_019043, intron 2 of 14) L2c|LINE|L2 29942 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 614.833-2 chr18 30970324 30971115 + 1.66667 NA Intergenic Intergenic 72023 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 341.334-2 chr22 24803983 24804455 + 1.66667 NA Intergenic Intergenic -1992 NM_001098498 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 283.667-6 chr18 1515819 1516251 + 1.66667 NA Intergenic Intergenic -156406 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 337.667-14 chr5 2910071 2910375 + 1.66667 NA Intergenic (TGAATT)n|Simple_repeat|Simple_repeat -7631 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 329.167-14 chr6 162659327 162659650 + 1.66667 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -67644 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 388.5-7 chr8 112806942 112807398 + 1.66667 NA intron (NM_001363185, intron 10 of 66) LTR35|LTR|ERV1 163677 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 338.501 chr4 139926728 139927123 + 1.66667 NA intron (NM_018717, intron 1 of 4) L1MC4a|LINE|L1 -201090 NR_147610 101927516 Hs.662570 NR_147610 LOC101927516 - uncharacterized LOC101927516 ncRNA 249.667-29 chr7 133688966 133689227 + 1.66667 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 135792 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 362.833-3 chr11 62208163 62208781 + 1.66667 NA promoter-TSS (NM_002407) promoter-TSS (NM_002407) -201 NM_002407 4246 Hs.97644 NM_002407 ENSG00000124939 SCGB2A1 LPHC|LPNC|MGB2|UGB3 secretoglobin family 2A member 1 protein-coding 240-17 chr14 56949984 56950164 + 1.66667 NA Intergenic MLT1J|LTR|ERVL-MaLR 136916 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 368-6 chr5 4690951 4691547 + 1.66667 NA Intergenic L1MEd|LINE|L1 -82232 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 310.5-13 chr5 148820691 148820965 + 1.66667 NA Intergenic L3|LINE|CR1 -5765 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 226-18 chr15 91843843 91844043 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -9765 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 207.167-15 chr3 49786548 49786735 + 1.66667 NA promoter-TSS (NM_001242829) promoter-TSS (NM_001242829) -99 NM_153273 9807 Hs.386168 NM_153273 ENSG00000176095 IP6K1 IHPK1|PiUS inositol hexakisphosphate kinase 1 protein-coding 375.334-3 chr4 80576459 80576789 + 1.66667 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 240904 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 220.834-5 chr4 14197051 14197468 + 1.66667 NA Intergenic Intergenic 85291 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 176.834-3 chr16 69570580 69570911 + 1.66667 NA intron (NM_138714, intron 2 of 15) intron (NM_138714, intron 2 of 15) 4779 NM_006599 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 340-16 chr6 165231686 165232051 + 1.66667 NA Intergenic Intergenic 77737 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 379 chr1 215912565 215912935 + 1.66667 NA intron (NM_206933, intron 38 of 71) L1PREC2|LINE|L1 -159715 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 655.334 chr1 200483227 200484038 + 1.66667 NA Intergenic MER5B|DNA|hAT-Charlie -73596 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 480.167-2 chr14 61268609 61269272 + 1.66667 NA Intergenic Intergenic 12398 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 279.834-3 chr12 85903080 85903361 + 1.66667 NA Intergenic L1MEd|LINE|L1 28925 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 260.667-31 chr2 225797966 225798162 + 1.66667 NA Intergenic L1ME3Cz|LINE|L1 -344730 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 398.333-3 chr10 126397924 126398595 + 1.66667 NA Intergenic Intergenic -9782 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 361.167-7 chr6 24524751 24525082 + 1.66667 NA intron (NM_170740, intron 8 of 10) MER5B|DNA|hAT-Charlie 29947 NM_001080 7915 Hs.371723 NM_001080 ENSG00000112294 ALDH5A1 SSADH|SSDH aldehyde dehydrogenase 5 family member A1 protein-coding 291.667-12 chr6 23787438 23787780 + 1.66667 NA Intergenic Intergenic -338606 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 167.667-40 chr6 144300953 144301227 + 1.66667 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) 9353 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 441.667-9 chr8 118977759 118978375 + 1.66667 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 25804 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 645.834-3 chr20 11543600 11544668 + 1.66667 NA Intergenic Intergenic -270751 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 519.667-3 chr5 142888655 142889135 + 1.66667 NA intron (NR_146198, intron 5 of 22) intron (NR_146198, intron 5 of 22) -19985 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 304.334-3 chr10 91768869 91769146 + 1.66667 NA Intergenic L1MEg1|LINE|L1 29189 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 263-18 chr8 127778133 127778321 + 1.66667 NA Intergenic L1MC5|LINE|L1 -16306 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 339.334-4 chr10 100856232 100856459 + 1.66667 NA Intergenic Intergenic -56618 NM_018121 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 180-63 chr9 90616561 90616732 + 1.66667 NA intron (NM_017594, intron 1 of 1) AluSx3|SINE|Alu 26178 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 382.667-8 chr6 161940361 161940789 + 1.66667 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 469598 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 356.667-9 chr5 118286462 118286755 + 1.66667 NA Intergenic L1PA15|LINE|L1 4034 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 204.667-21 chr2 41626582 41626810 + 1.66667 NA Intergenic L4_A_Mam|LINE|RTE-X -250859 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 434.667-3 chr8 138740357 138740932 + 1.66667 NA intron (NM_152888, intron 22 of 64) intron (NM_152888, intron 22 of 64) 173397 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 353.501 chr16 6505157 6505548 + 1.66667 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -268457 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 191.667-42 chr7 38314486 38314684 + 1.66667 NA Intergenic Intergenic -26992 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 175.833-11 chr10 111391846 111392025 + 1.66667 NA Intergenic Intergenic 277644 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 227.5-10 chr11 34899224 34899451 + 1.66667 NA intron (NM_015957, intron 1 of 6) HUERS-P3-int|LTR|ERV1 -16793 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 487.666-5 chr7 44587864 44588497 + 1.66667 NA Intergenic L1MB2|LINE|L1 -5885 NM_001303058 222068 Hs.598832 NM_182547 ENSG00000158604 TMED4 ERS25|GMP25iso|HNLF|p24a3|p24alpha3 transmembrane p24 trafficking protein 4 protein-coding 330-3 chr1 201901594 201901852 + 1.66667 NA intron (NM_012134, intron 1 of 2) MER96B|DNA|hAT-Tip100 13046 NM_198149 149345 Hs.632471 NM_198149 ENSG00000198892 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 256.334-10 chr8 11510940 11511200 + 1.66667 NA intron (NM_001330465, intron 1 of 11).2 intron (NM_001330465, intron 1 of 11).2 16683 NM_001330465 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 390-9 chr6 52440146 52440489 + 1.66667 NA intron (NR_033327, intron 3 of 9) Tigger17a|DNA|TcMar-Tigger 19309 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 373.5-7 chr5 118326981 118327391 + 1.66667 NA Intergenic Intergenic 44612 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 237.001 chr1 76026449 76026640 + 1.66667 NA Intergenic Intergenic 15220 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 438.834-2 chr21 21468801 21469298 + 1.66667 NA intron (NM_001352592, intron 15 of 18) intron (NM_001352592, intron 15 of 18) 268270 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 431.334 chr16 17580389 17580810 + 1.66667 NA Intergenic L1M4|LINE|L1 -109639 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 511.666-3 chr8 136792373 136792813 + 1.66667 NA intron (NR_147196, intron 3 of 5) AluJo|SINE|Alu 261795 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 331.667-2 chr1 109125346 109125694 + 1.66667 NA intron (NM_001284352, intron 1 of 20) AluSc|SINE|Alu 11405 NM_001267048 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 412.333 chr1 152183277 152183557 + 1.66667 NA Intergenic Intergenic -24189 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 254.167-10 chr12 6659891 6660123 + 1.66667 NA intron (NM_016162, intron 1 of 7) intron (NM_016162, intron 1 of 7) 3112 NM_001127584 51147 Hs.524210 NM_016162 ENSG00000111653 ING4 my036|p29ING4 inhibitor of growth family member 4 protein-coding 280.167-7 chr2 40713765 40714025 + 1.66667 NA Intergenic MamRTE1|LINE|RTE-BovB -201460 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 432.001-2 chr22 41832599 41833024 + 1.66667 NA promoter-TSS (NM_004599) promoter-TSS (NM_004599) -294 NR_103834 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 251.334-17 chr9 29792048 29792247 + 1.66667 NA Intergenic Intergenic -578546 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 275-33 chrX 24168254 24168556 + 1.66667 NA intron (NM_001178085, intron 4 of 10) Tigger20a|DNA|TcMar-Tigger 18676 NM_001178084 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein X-linked protein-coding 198.667-6 chr12 4685305 4685452 + 1.66667 NA intron (NM_005002, intron 10 of 10) intron (NM_005002, intron 10 of 10) 34724 NR_110112 101929549 Hs.663336 NR_110112 ENSG00000255474 GAU1 GALNT8-DT GALNT8 antisense upstream 1 ncRNA 507.667-5 chrX 20527046 20527570 + 1.66667 NA Intergenic MIR|SINE|MIR -260399 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 270.667-14 chr22 46758684 46759031 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR -3760 NM_001284304 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 296-14 chr6 57160595 57160864 + 1.66667 NA intron (NM_015555, intron 12 of 13) intron (NM_015555, intron 12 of 13) 11484 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 314.5-9 chr17 32784444 32784807 + 1.66667 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 92499 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 254.167-27 chr8 88184009 88184205 + 1.66667 NA intron (NM_005941, intron 3 of 9) intron (NM_005941, intron 3 of 9) 143376 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 213.834-5 chr12 22464818 22465046 + 1.66667 NA intron (NM_001286176, intron 22 of 26) intron (NM_001286176, intron 22 of 26) 79265 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 243-6 chr14 78810077 78810296 + 1.66667 NA intron (NR_073547, intron 9 of 20) intron (NR_073547, intron 9 of 20) -389796 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 164.167-17 chr15 57235942 57236082 + 1.66667 NA intron (NM_207038, intron 12 of 19) intron (NM_207038, intron 12 of 19) 16582 NM_001306219 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 279.167-8 chr18 2536584 2536891 + 1.66667 NA TTS (NM_001308401) TTS (NM_001308401) 34768 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 246.667-17 chr4 130305366 130305649 + 1.66667 NA Intergenic Intergenic -70854 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 302.5-5 chr10 41746843 41747258 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 620995 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 262.834-6 chr6 89838957 89839516 + 1.66667 NA intron (NM_012115, intron 1 of 9) intron (NM_012115, intron 1 of 9) 9336 NM_001137668 9994 Hs.558218 NM_012115 ENSG00000118412 CASP8AP2 CED-4|FLASH|RIP25 caspase 8 associated protein 2 protein-coding 308.833-11 chr2 62284803 62285081 + 1.66667 NA Intergenic L1ME2|LINE|L1 69421 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 302.167-11 chr3 14210898 14211246 + 1.66667 NA Intergenic MIR1_Amn|SINE|MIR 32255 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 306-5 chr14 63169463 63169775 + 1.66667 NA Intergenic L1MA7|LINE|L1 -34824 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 275.5-2 chr1 88079180 88079468 + 1.66667 NA Intergenic Intergenic -604820 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 291-3 chr10 16848285 16848491 + 1.66667 NA intron (NM_001081, intron 60 of 66) intron (NM_001081, intron 60 of 66) -30934 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 307.833-10 chr5 176388599 176389034 + 1.66667 NA promoter-TSS (NM_001317975) promoter-TSS (NM_001317975) 65 NM_138820 192286 Hs.534575 NM_138820 ENSG00000146066 HIGD2A RCF1b HIG1 hypoxia inducible domain family member 2A protein-coding 190.667-4 chr1 239527613 239527840 + 1.66667 NA intron (NM_001347716, intron 2 of 7) MIRb|SINE|MIR -101347 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 702.166 chr18 57437365 57438377 + 1.66667 NA intron (NM_004852, intron 1 of 1) CpG 2497 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 392.001-2 chr14 68595572 68595836 + 1.66667 NA 3' UTR (NM_133509, exon 11 of 11) 3' UTR (NM_133509, exon 11 of 11) 33083 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 398.001-2 chr5 60700452 60700787 + 1.66667 NA promoter-TSS (NM_018369) promoter-TSS (NM_018369) -453 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 349.667-7 chr20 35966804 35967022 + 1.66667 NA Intergenic LTR36|LTR|ERV1 -1677 NM_001365709 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 521.334-4 chr8 111717732 111718262 + 1.66667 NA Intergenic Intergenic 341358 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 449.166-4 chr20 54067213 54067878 + 1.66667 NA TTS (NR_039913) TTS (NR_039913) 940 NR_039913 100616225 NR_039913 ENSG00000265595 MIR4756 - microRNA 4756 ncRNA 247.667-14 chr18 28886797 28886980 + 1.66667 NA Intergenic Intergenic -709758 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 241.667-31 chr8 127204238 127204545 + 1.66667 NA Intergenic L1ME3|LINE|L1 -6764 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 393.334-5 chr6 51729897 51730154 + 1.66667 NA intron (NM_170724, intron 60 of 60) L1M4|LINE|L1 108155 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 569.833-3 chr8 26243680 26244268 + 1.66667 NA Intergenic Intergenic -47534 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 286-16 chr5 2727522 2727900 + 1.66667 NA Intergenic MIR|SINE|MIR 15120 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 174.334-4 chr14 69014079 69014287 + 1.66667 NA Intergenic MamRep38|DNA|hAT 34501 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 308.001 chr1 174388409 174388838 + 1.66667 NA intron (NM_001366445, intron 12 of 13) intron (NM_001366445, intron 12 of 13) -59341 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 212.834-2 chr17 32378375 32378515 + 1.66667 NA Intergenic Intergenic 28307 NM_001098507 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 385.833-2 chr14 60661540 60661952 + 1.66667 NA Intergenic Intergenic -12269 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 163.5-4 chr1 208252522 208252800 + 1.66667 NA Intergenic Intergenic -8277 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 221.667-20 chr18 77711301 77711578 + 1.66667 NA Intergenic Intergenic 282288 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 360-10 chr2 173942770 173943181 + 1.66667 NA intron (NM_003111, intron 4 of 6) MER2|DNA|TcMar-Tigger 20905 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 214.334-9 chr6 21987575 21987713 + 1.66667 NA intron (NR_015410, intron 6 of 11) intron (NR_015410, intron 6 of 11) 159549 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 666.501 chr11 35485867 35486646 + 1.66667 NA intron (NM_015430, intron 3 of 11) intron (NM_015430, intron 3 of 11) 39360 NM_001001991 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 253.333-20 chr3 118927989 118928261 + 1.66667 NA intron (NM_001353325, intron 4 of 7) intron (NM_001353325, intron 4 of 7) -14951 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 339.167-5 chr18 76904727 76905040 + 1.66667 NA intron (NM_001306089, intron 12 of 30) intron (NM_001306089, intron 12 of 30) 80723 NM_007345 7776 Hs.719137 NM_007345 ENSG00000130856 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding 243.667-9 chr13 95975771 95976050 + 1.66667 NA intron (NM_020121, intron 10 of 38) L1MA4|LINE|L1 77491 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 257.667-14 chr20 51737424 51737592 + 1.66667 NA intron (NM_006045, intron 1 of 27) intron (NM_006045, intron 1 of 27) 30882 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 404.167-6 chr20 17024097 17024584 + 1.66667 NA Intergenic Intergenic -201767 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 278 chr1 6793990 6794328 + 1.66667 NA intron (NR_146204, intron 1 of 2) intron (NR_146204, intron 1 of 2) 8705 NM_001195563 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 303.334-7 chr17 18955562 18955815 + 1.66667 NA intron (NM_001270648, intron 1 of 13) intron (NM_001270648, intron 1 of 13) 3523 NM_152351 125206 Hs.462418 NM_152351 ENSG00000154025 SLC5A10 SGLT-5|SGLT5 solute carrier family 5 member 10 protein-coding 397.334-4 chr3 19146739 19146979 + 1.66667 NA Intergenic Intergenic -1651 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 340.667-14 chr7 81457841 81458296 + 1.66667 NA Intergenic Intergenic 103751 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 398.334-2 chr12 6193844 6194254 + 1.66667 NA Intergenic Intergenic -5897 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 306.834-4 chr18 10560329 10560580 + 1.66667 NA Intergenic Intergenic 34427 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 179.834-4 chr16 72668432 72668648 + 1.66667 NA Intergenic L2c|LINE|L2 -3570 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 291.334-2 chr15 94325181 94325449 + 1.66667 NA intron (NM_018349, intron 3 of 21) intron (NM_018349, intron 3 of 21) 27114 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 270.834-7 chr3 61936309 61936655 + 1.66667 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 374911 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 518.667 chr5 94850402 94850882 + 1.66667 NA intron (NM_001002796, intron 17 of 22) intron (NM_001002796, intron 17 of 22) 231224 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 307-15 chr6 166025444 166025708 + 1.66667 NA Intergenic Intergenic -37537 NR_026860 90632 Hs.31917 NR_026860 ENSG00000112541 LINC00473 C6orf176|LNC473|bA142J11.1 long intergenic non-protein coding RNA 473 ncRNA 195-19 chr16 80913558 80913771 + 1.66667 NA Intergenic MLT1H|LTR|ERVL-MaLR -21068 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 218.334-2 chr15 56981045 56981199 + 1.66667 NA intron (NM_207038, intron 3 of 19) intron (NM_207038, intron 3 of 19) 61677 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 311.334-2 chr11 82814510 82814855 + 1.66667 NA Intergenic Intergenic -80818 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 347.167-12 chr9 68999052 68999429 + 1.66667 NA intron (NM_003558, intron 15 of 15) MLT1C|LTR|ERVL-MaLR 14883 NM_002732 5568 Hs.158029 NM_002732 ENSG00000165059 PRKACG BDPLT19|KAPG|PKACg protein kinase cAMP-activated catalytic subunit gamma protein-coding 353.334-3 chr12 64138846 64139210 + 1.66667 NA intron (NM_001346201, intron 21 of 21) MER20B|DNA|hAT-Charlie 83268 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 184-24 chr17 78865746 78866013 + 1.66667 NA intron (NM_003255, intron 3 of 4) intron (NM_003255, intron 3 of 4) -25352 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 285.667-17 chr5 51301975 51302257 + 1.66667 NA Intergenic Intergenic 81216 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 431.667-3 chr2 208051203 208051712 + 1.66667 NA Intergenic Intergenic -25930 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 328.167-2 chr16 24504296 24504521 + 1.66667 NA Intergenic Intergenic -35158 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 321-26 chr9 30194925 30195306 + 1.66667 NA Intergenic Intergenic 213339 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 598.667-2 chr14 78598174 78598651 + 1.66667 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 194693 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 228.334-6 chr18 41629862 41630060 + 1.66667 NA Intergenic Intergenic -109284 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 178-8 chr10 115377513 115377706 + 1.66667 NA intron (NM_207303, intron 19 of 28) L1M3a|LINE|L1 284244 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 301.501 chr8 107799446 107799669 + 1.66667 NA Intergenic Intergenic 282382 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 188.834-11 chr5 55850338 55850580 + 1.66667 NA promoter-TSS (NM_001242638) promoter-TSS (NM_001242638) -898 NM_001242638 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 454.667 chr1 178330830 178331351 + 1.66667 NA intron (NM_170692, intron 3 of 17) MIR|SINE|MIR -10361 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 288.334-2 chr10 109264510 109264805 + 1.66667 NA Intergenic L1ME3C|LINE|L1 658589 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 319.667-12 chr8 131906641 131907019 + 1.66667 NA intron (NM_001323555, intron 1 of 22) intron (NM_001323555, intron 1 of 22) 2737 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 201.667-15 chr16 27867513 27867747 + 1.66667 NA intron (NM_001323901, intron 2 of 5) intron (NM_001323901, intron 2 of 5) 20527 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 232.5-9 chr16 35157033 35157220 + 1.66667 NA Intergenic L1PB3|LINE|L1 13265 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 346.667-3 chr1 99307477 99307861 + 1.66667 NA 3' UTR (NM_001166252, exon 6 of 6) 3' UTR (NM_001166252, exon 6 of 6) 43377 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 270.5-28 chr4 77095158 77095494 + 1.66667 NA Intergenic Intergenic -19337 NM_006835 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 245-40 chr9 9256137 9256397 + 1.66667 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 398249 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 427.834-3 chr7 2034463 2034925 + 1.66667 NA intron (NM_001013837, intron 12 of 18) intron (NM_001013837, intron 12 of 18) 54358 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 296.667-25 chr9 94441805 94442094 + 1.66667 NA intron (NM_032558, intron 5 of 11) L1MC5a|LINE|L1 67380 NM_032558 84641 Hs.555996 NM_032558 ENSG00000148110 MFSD14B HIATL1 major facilitator superfamily domain containing 14B protein-coding 197.667-3 chr1 240692253 240692501 + 1.66667 NA Intergenic Intergenic -80222 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 372.667 chr1 104120755 104121120 + 1.66667 NA Intergenic L2c|LINE|L2 47914 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 298.167-3 chr11 60841074 60841263 + 1.66667 NA promoter-TSS (NM_024098) promoter-TSS (NM_024098) -945 NM_024098 79080 Hs.4253 NM_024098 ENSG00000110104 CCDC86 - coiled-coil domain containing 86 protein-coding 211.333-32 chr3 192825291 192825501 + 1.66667 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 92460 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 375.833-4 chr10 43889211 43889833 + 1.66667 NA intron (NR_038268, intron 4 of 4) L1M6|LINE|L1 -19774 NR_033846 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 281 chr1 1188585 1188815 + 1.66667 NA intron (NM_001130045, intron 13 of 15) AluSx1|SINE|Alu 9019 NM_153254 254173 Hs.454835 NM_153254 ENSG00000162571 TTLL10 TTLL5 tubulin tyrosine ligase like 10 protein-coding 258.334-7 chr4 62053157 62053520 + 1.66667 NA intron (NM_001371343, intron 23 of 23) intron (NM_001371343, intron 23 of 23) 108427 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 324.834-3 chr2 103125437 103125772 + 1.66667 NA Intergenic Intergenic -141175 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 380.833-6 chr8 37173051 37173380 + 1.66667 NA Intergenic L1ME4a|LINE|L1 320698 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 173.334-4 chr2 207851810 207851916 + 1.66667 NA intron (NM_001080475, intron 7 of 7) Charlie2b|DNA|hAT-Charlie -81957 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 435.667-5 chr5 108040450 108040836 + 1.66667 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 341455 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 217-29 chr7 2177319 2177518 + 1.66667 NA intron (NM_001013837, intron 10 of 18) MER92-int|LTR|ERV1 55527 NM_001013837 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 175.334-7 chr7 111050359 111050493 + 1.66667 NA intron (NM_032549, intron 3 of 5) MIRb|SINE|MIR -40580 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 410.667-3 chr12 48192277 48192866 + 1.66667 NA Intergenic MER51-int|LTR|ERV1 8927 NM_001013635 387856 Hs.251699 NM_001013635 ENSG00000177875 CCDC184 C12orf68 coiled-coil domain containing 184 protein-coding 278-6 chr10 32293622 32293936 + 1.66667 NA intron (NM_001272004, intron 2 of 13) intron (NM_001272004, intron 2 of 13) 53379 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 548.001 chr8 93960825 93961356 + 1.66667 NA Intergenic Intergenic 44143 NM_001161779 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 419.001-3 chr5 64981297 64981638 + 1.66667 NA intron (NM_005869, intron 13 of 13) L1ME4a|LINE|L1 212537 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 433.001 chr21 20459317 20459686 + 1.66667 NA Intergenic L1M3a|LINE|L1 -200816 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 347-10 chr16 61658754 61659098 + 1.66667 NA intron (NM_001796, intron 10 of 11) L1M5|LINE|L1 377512 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 332.334-6 chr8 23527137 23527430 + 1.66667 NA Intergenic Intergenic -1673 NM_001317812 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 324.167-15 chr3 86845968 86846229 + 1.66667 NA Intergenic Intergenic 145051 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 189-50 chr6 139709038 139709184 + 1.66667 NA Intergenic Intergenic -61962 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 375-4 chr12 126858689 126859187 + 1.66667 NA Intergenic Intergenic 15752 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 537.501 chr1 36099499 36100001 + 1.66667 NA intron (NM_001294347, intron 3 of 3) intron (NM_001294347, intron 3 of 3) 10858 NM_017825 54936 Hs.18021 NM_017825 ENSG00000116863 ADPRHL2 ARH3|CONDSIAS ADP-ribosylhydrolase like 2 protein-coding 328.667-15 chr6 55355027 55355551 + 1.66667 NA intron (NM_207410, intron 5 of 8) L1PA8A|LINE|L1 27820 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 350.667-6 chr16 47036915 47037323 + 1.66667 NA Intergenic MER53|DNA|hAT -63445 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 331.834-4 chr12 41237171 41237549 + 1.66667 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 49040 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 386.667-10 chr8 16120709 16121016 + 1.66667 NA intron (NM_138715, intron 8 of 9) intron (NM_138715, intron 8 of 9) 65410 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 326.334-6 chr6 34320761 34321077 + 1.66667 NA intron (NM_001202470, intron 6 of 8) intron (NM_001202470, intron 6 of 8) 71750 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 355.833-12 chr8 60774856 60775241 + 1.66667 NA intron (NM_017780, intron 2 of 37) intron (NM_017780, intron 2 of 37) 33789 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 394.5-4 chr2 122073720 122074122 + 1.66667 NA Intergenic Intergenic 318270 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 413.666 chr11 66051965 66052371 + 1.66667 NA promoter-TSS (NR_145738) promoter-TSS (NR_145738) -196 NM_006842 10992 Hs.406423 NM_006842 ENSG00000087365 SF3B2 Cus1|SAP145|SF3B145|SF3b1|SF3b150 splicing factor 3b subunit 2 protein-coding 332.334-5 chr19 44989121 44989419 + 1.66667 NA intron (NM_001282175, intron 9 of 13) intron (NM_001282175, intron 9 of 13) -12194 NM_006509 5971 Hs.654402 NM_006509 ENSG00000104856 RELB I-REL|IMD53|IREL|REL-B RELB proto-oncogene, NF-kB subunit protein-coding 395-2 chr11 20672571 20672949 + 1.66667 NA intron (NM_201551, intron 1 of 18) intron (NM_201551, intron 1 of 18) 3174 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 184-37 chr3 80838639 80838818 + 1.66667 NA Intergenic Intergenic 68024 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 282.334-2 chr11 114631826 114632242 + 1.66667 NA Intergenic (ATAAT)n|Simple_repeat|Simple_repeat -36248 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 311.001 chr17 53838084 53838360 + 1.66667 NA Intergenic Intergenic 15295 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 194.667-14 chr11 98597672 98597815 + 1.66667 NA Intergenic Intergenic -423206 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 287.667-24 chr6 126367208 126367551 + 1.66667 NA intron (NR_104462, intron 2 of 3) intron (NR_104462, intron 2 of 3) 27264 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 195.5-6 chr14 30681989 30682334 + 1.66667 NA intron (NM_016106, intron 14 of 24) L4_B_Mam|LINE|RTE-X 59842 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 344.167-5 chr16 73365213 73365538 + 1.66667 NA Intergenic L2a|LINE|L2 -21430 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 219.666-6 chr7 32355408 32355652 + 1.66667 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) -56202 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 236.167-14 chr6 113644750 113645006 + 1.66667 NA intron (NR_125844, intron 1 of 2) intron (NR_125844, intron 1 of 2) 5197 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 214.667-18 chr2 86310380 86310611 + 1.66667 NA intron (NM_001164730, intron 1 of 6) Tigger3a|DNA|TcMar-Tigger 27131 NM_001164732 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 373.667 chr1 238960079 238960367 + 1.66667 NA Intergenic Intergenic -426345 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 392.5-8 chr7 47999769 48000214 + 1.66667 NA intron (NM_001030019, intron 6 of 9) intron (NM_001030019, intron 6 of 9) -20376 NM_001363683 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 370.666-3 chr16 53774493 53774791 + 1.66667 NA intron (NM_001363897, intron 1 of 7) LTR67B|LTR|ERVL 70486 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 443.833-2 chr17 50161520 50161943 + 1.66667 NA Intergenic Intergenic -4274 NM_001135697 6442 Hs.463412 NM_000023 ENSG00000108823 SGCA 50DAG|ADL|DAG2|DMDA2|LGMD2D|LGMDR3|SCARMD1|adhalin sarcoglycan alpha protein-coding 238-14 chr15 33147482 33147693 + 1.66667 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 47127 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 436.667-5 chr14 69751009 69751366 + 1.66667 NA Intergenic FLAM_C|SINE|Alu -15955 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 201.667-52 chr7 124824752 124825074 + 1.66667 NA intron (NM_001042594, intron 17 of 17) intron (NM_001042594, intron 17 of 17) -34103 NM_001024603 154872 Hs.444163 NM_001024603 ENSG00000275356 C7orf77 - chromosome 7 open reading frame 77 protein-coding 246.167-9 chr14 60930817 60930981 + 1.66667 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 50180 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 452.334-3 chr10 84929635 84929956 + 1.66667 NA Intergenic L1ME4c|LINE|L1 269110 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 181.667-13 chr14 56299795 56299937 + 1.66667 NA 3' UTR (NM_021255, exon 6 of 6) 3' UTR (NM_021255, exon 6 of 6) 181455 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 217.833-4 chr1 201384298 201384673 + 1.66667 NA intron (NM_005558, intron 5 of 9) intron (NM_005558, intron 5 of 9) -6805 NM_001001432 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 308-16 chr5 73218411 73218772 + 1.66667 NA Intergenic Intergenic -16630 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 605.499 chr3 115790860 115791353 + 1.66667 NA Intergenic Intergenic 114020 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 184.167-31 chr5 141091754 141091926 + 1.66667 NA Intergenic Intergenic -2775 NM_018936 56133 Hs.533023 NM_018936 ENSG00000112852 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 680.501 chr1 210374097 210374925 + 1.66667 NA intron (NM_001122834, intron 3 of 11) intron (NM_001122834, intron 3 of 11) 45145 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 304.667-9 chr2 111211850 111212145 + 1.66667 NA intron (NR_015395, intron 5 of 6) THE1B|LTR|ERVL-MaLR 91083 NM_207003 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 261.834-2 chr16 66383005 66383251 + 1.66667 NA intron (NM_001795, intron 2 of 11) L1MC3|LINE|L1 16437 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 333-9 chr2 189179851 189180132 + 1.66667 NA promoter-TSS (NM_000393) promoter-TSS (NM_000393) -230 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 287.334-8 chr6 63765705 63765952 + 1.66667 NA intron (NM_001292009, intron 40 of 43) L1MA2|LINE|L1 -41008 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 237-32 chr4 106728886 106729038 + 1.66667 NA Intergenic L1M4|LINE|L1 295338 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 567.834 chr10 123573177 123574115 + 1.66667 NA Intergenic MER5B|DNA|hAT-Charlie -92709 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 326.501-2 chr5 73618076 73618360 + 1.66667 NA Intergenic Intergenic -7940 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 369.167-3 chr18 652031 652294 + 1.66667 NA intron (NM_001012716, intron 1 of 1) MIR|SINE|MIR -5491 NM_001354867 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 454.667-6 chr5 66853219 66853665 + 1.66667 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 24669 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 303.834-8 chr8 119265137 119265437 + 1.66667 NA Intergenic Intergenic -18430 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 307.5-10 chr14 66255384 66255625 + 1.66667 NA Intergenic Intergenic -230867 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 224.834 chr1 237465721 237465940 + 1.66667 NA intron (NM_001035, intron 16 of 104) Tigger3a|DNA|TcMar-Tigger -5289 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 207.334-8 chr5 86145097 86145251 + 1.66667 NA Intergenic L1PA12|LINE|L1 -137270 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 235.167-22 chr3 94541654 94541825 + 1.66667 NA Intergenic MER102a|DNA|hAT-Charlie -396524 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 301.667-11 chr3 86988084 86988329 + 1.66667 NA intron (NM_001320493, intron 1 of 3) intron (NM_001320493, intron 1 of 3) 2943 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 392.668 chr5 24110030 24110459 + 1.66667 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 158896 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 422.334 chr10 55680661 55680989 + 1.66667 NA Intergenic L1MA6|LINE|L1 -52883 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 222.834-11 chr8 78529724 78530099 + 1.66667 NA intron (NM_181839, intron 1 of 2) intron (NM_181839, intron 1 of 2) 13571 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 310.167 chr1 9289120 9289449 + 1.66667 NA Intergenic Intergenic -3610 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 175.333-40 chr3 94040894 94041166 + 1.66667 NA intron (NR_135621, intron 5 of 8) intron (NR_135621, intron 5 of 8) -12433 NM_001001850 415117 Hs.679768 NM_001001850 ENSG00000178750 STX19 - syntaxin 19 protein-coding 234-38 chr9 80861985 80862553 + 1.66667 NA Intergenic L1MEc|LINE|L1 827266 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 251-17 chr20 21459797 21460069 + 1.66667 NA Intergenic Intergenic 54131 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 339-6 chr2 15936239 15936493 + 1.66667 NA TTS (NR_125783) TTS (NR_125783) -4184 NM_001293233 4613 Hs.25960 NM_005378 ENSG00000134323 MYCN MODED|N-myc|NMYC|ODED|bHLHe37 MYCN proto-oncogene, bHLH transcription factor protein-coding 903.501 chr9 27529374 27530439 + 1.66667 NA promoter-TSS (NM_024761) promoter-TSS (NM_024761) -92 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 199.667 chr1 56750627 56750915 + 1.66667 NA intron (NM_001004303, intron 9 of 19) MIRc|SINE|MIR 68633 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 302.333-6 chr18 6395505 6396030 + 1.66667 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 19144 NM_001365768 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 341.667-6 chr18 54444179 54444469 + 1.66667 NA Intergenic Intergenic 86407 NR_110234 162681 Hs.208701 NM_173529 ENSG00000166845 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 339-16 chr8 106056405 106056788 + 1.66667 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 3907 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 251-33 chr8 19183999 19184411 + 1.66667 NA intron (NR_038919, intron 4 of 4) intron (NR_038919, intron 4 of 4) 61317 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 330.334-5 chr8 138115964 138116352 + 1.66667 NA Intergenic Intergenic -32613 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 283.334-6 chr19 35744796 35745132 + 1.66667 NA promoter-TSS (NM_001281532) promoter-TSS (NM_001281532) 454 NM_144987 199746 Hs.351558 NM_144987 ENSG00000161265 U2AF1L4 U2AF1-RS3|U2AF1L3|U2AF1L3V1|U2AF1RS3|U2af26 U2 small nuclear RNA auxiliary factor 1 like 4 protein-coding 281.001 chr14 28294704 28294984 + 1.66667 NA Intergenic L1PREC2|LINE|L1 470475 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 282.667-23 chr4 118270669 118270874 + 1.66667 NA Intergenic Intergenic -7991 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 226-17 chr15 51868648 51868850 + 1.66667 NA intron (NM_014547, intron 2 of 9) AluSx1|SINE|Alu 39096 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 341.667-9 chr20 13486531 13486817 + 1.66667 NA intron (NR_136631, intron 10 of 13) L1MC5|LINE|L1 152258 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 414.001-4 chr7 28296800 28297071 + 1.66667 NA Intergenic L2c|LINE|L2 -2386 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 321.001-4 chr4 176034452 176034658 + 1.66667 NA Intergenic Intergenic -31286 NM_001350727 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 377.501 chr10 69638260 69638636 + 1.66667 NA Intergenic Intergenic 8201 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 197.834-3 chr1 85311649 85311785 + 1.66667 NA Intergenic AluSx3|SINE|Alu -35085 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 282.667-11 chr12 127692405 127692582 + 1.66667 NA Intergenic Intergenic -36905 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 445.501 chr4 7987559 7988197 + 1.66667 NA intron (NM_001130084, intron 16 of 19) intron (NM_001130084, intron 16 of 19) 17503 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 265.834-5 chr3 96820617 96820835 + 1.66667 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 6132 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 356-17 chr6 35467706 35468401 + 1.66667 NA promoter-TSS (NM_007104) promoter-TSS (NM_007104) -348 NM_007104 4736 Hs.148340 NM_007104 ENSG00000198755 RPL10A CSA19|Csa-19|L10A|NEDD6 ribosomal protein L10a protein-coding 243.334-9 chr5 51691235 51691478 + 1.66667 NA Intergenic L1ME2|LINE|L1 307908 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 693.001 chr3 196032003 196032724 + 1.66667 NA Intergenic L1MA3|LINE|L1 -42084 NR_003264 255812 Hs.566872 NR_003264 ENSG00000185485 SDHAP1 SDHAL1|SDHALP1 succinate dehydrogenase complex flavoprotein subunit A pseudogene 1 pseudo 429.834-3 chr15 60371114 60371532 + 1.66667 NA intron (NM_001002857, intron 4 of 13) intron (NM_001002857, intron 4 of 13) 26663 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 330.001-2 chr8 137785497 137785707 + 1.66667 NA Intergenic Intergenic 297943 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 169 chr1 86637469 86637663 + 1.66667 NA intron (NR_024604, intron 4 of 14) intron (NR_024604, intron 4 of 14) 3290 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 477.5-3 chr4 98467483 98467958 + 1.66667 NA Intergenic Intergenic 190891 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 188.334-7 chr2 164967852 164968096 + 1.66667 NA Intergenic MER57E1|LTR|ERV1 -12449 NM_001351540 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 419.167-3 chr17 76353656 76354229 + 1.66667 NA promoter-TSS (NM_002766) promoter-TSS (NM_002766) -26 NM_002766 5635 Hs.77498 NM_002766 ENSG00000161542 PRPSAP1 PAP39 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding 205-10 chr19 4757502 4757732 + 1.66667 NA Intergenic Tigger3a|DNA|TcMar-Tigger -11488 NR_027148 284424 Hs.326728 NM_174947 ENSG00000176840 MIR7-3HG C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2 MIR7-3 host gene ncRNA 183-17 chr14 66879238 66879597 + 1.66667 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -310023 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 459.5-6 chr6 70311967 70312420 + 1.66667 NA Intergenic Intergenic -9109 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 324.167-2 chr1 174864467 174864722 + 1.66667 NA intron (NM_001366446, intron 19 of 25) THE1C|LTR|ERVL-MaLR -9792 NM_001243763 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 412.834-9 chr7 23181510 23182202 + 1.66667 NA promoter-TSS (NM_007342) promoter-TSS (NM_007342) -192 NM_001370445 11097 Hs.408241 NM_007342 ENSG00000136243 NUP42 CG1|NLP-1|NLP_1|NUPL2|hCG1 nucleoporin 42 protein-coding 386.333-8 chr3 95677765 95678164 + 1.66667 NA intron (NR_077228, intron 2 of 4) intron (NR_077228, intron 2 of 4) 5229 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 258.333-9 chr2 57913996 57914247 + 1.66667 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 6470 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 412.834 chr10 61028750 61029242 + 1.66667 NA Intergenic Intergenic 12721 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 219.667-31 chr7 85038255 85038446 + 1.66667 NA intron (NM_152754, intron 9 of 16) intron (NM_152754, intron 9 of 16) 83581 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 189-35 chr3 150146845 150146982 + 1.66667 NA intron (NR_136187, intron 2 of 2) intron (NR_136187, intron 2 of 2) 50470 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 322.167-6 chr3 25441920 25442257 + 1.66667 NA intron (NR_110892, intron 1 of 6) MER3|DNA|hAT-Charlie 13825 NM_001290276 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 224-6 chr10 67965724 67965915 + 1.66667 NA intron (NM_001278185, intron 16 of 23) intron (NM_001278185, intron 16 of 23) 45064 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 347.834-7 chr5 16261107 16261430 + 1.66667 NA Intergenic MIRc|SINE|MIR 81027 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 541.501 chr20 23936968 23937583 + 1.66667 NA Intergenic Intergenic 49600 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 267.667 chr1 41918853 41919111 + 1.66667 NA promoter-TSS (NR_038260) promoter-TSS (NR_038260) -60 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 308.334-4 chr3 7700434 7700627 + 1.66667 NA intron (NM_181874, intron 10 of 10) intron (NM_181874, intron 10 of 10) -165246 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 609.334-2 chr2 42328380 42329118 + 1.66667 NA intron (NM_001145076, intron 20 of 21) intron (NM_001145076, intron 20 of 21) 31289 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 445.667-2 chr2 221233099 221233531 + 1.66667 NA Intergenic Intergenic 338989 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 377.668 chr15 63113528 63113821 + 1.66667 NA Intergenic Intergenic -8187 NM_171846 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 189.5-42 chr8 125680185 125680517 + 1.66667 NA Intergenic Intergenic 248142 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 310.667-11 chr20 44282078 44282407 + 1.66667 NA Intergenic ERVL-E-int|LTR|ERVL 28960 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 304-22 chr4 25563349 25563686 + 1.66667 NA intron (NR_134641, intron 1 of 3) AluJb|SINE|Alu 5829 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 399.833-5 chr6 163306759 163307255 + 1.66667 NA intron (NM_001080379, intron 4 of 4) MIRc|SINE|MIR 17466 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 418.834-3 chr5 30501790 30502380 + 1.66667 NA Intergenic Intergenic 621525 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 279.167-5 chr14 82801690 82801968 + 1.66667 NA Intergenic Intergenic 159197 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 457.167 chr12 85575658 85576070 + 1.66667 NA Intergenic Intergenic 260545 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 291.5-9 chr13 46321771 46322123 + 1.66667 NA Intergenic MIR|SINE|MIR -24103 NR_047493 100861554 Hs.90866 NR_047493 ENSG00000261097 LINC00563 - long intergenic non-protein coding RNA 563 ncRNA 222.167-34 chr7 36022798 36023052 + 1.66667 NA Intergenic L1PA17|LINE|L1 -72385 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 292-8 chr12 119116570 119116751 + 1.66667 NA intron (NM_194286, intron 3 of 12) MIRb|SINE|MIR 59824 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 318.834-3 chr11 86241416 86241693 + 1.66667 NA Intergenic L3b|LINE|CR1 -2830 NM_001330334 8726 Hs.503510 NM_003797 ENSG00000074266 EED COGIS|HEED|WAIT1 embryonic ectoderm development protein-coding 343.501-3 chr11 44894277 44894567 + 1.66667 NA intron (NM_130783, intron 3 of 9) intron (NM_130783, intron 3 of 9) 55738 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 393.001-3 chr6 42655647 42655996 + 1.66667 NA intron (NM_015255, intron 26 of 46) intron (NM_015255, intron 26 of 46) 66776 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 493.667-5 chr5 96703759 96704351 + 1.66667 NA intron (NM_001042446, intron 1 of 26) intron (NM_001042446, intron 1 of 26) 1395 NM_001284212 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 495.167 chr1 73675119 73675552 + 1.66667 NA intron (NR_146300, intron 1 of 3) intron (NR_146300, intron 1 of 3) 656 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 325-6 chr14 47212829 47213108 + 1.66667 NA intron (NM_001113498, intron 3 of 16) HAL1|LINE|L1 130278 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 1009.33-3 chr20 33076350 33077209 + 1.66667 NA Intergenic Intergenic -4733 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 536 chr10 69210715 69211322 + 1.66667 NA Intergenic Intergenic -9314 NM_025130 80201 Hs.522988 NM_025130 ENSG00000156510 HKDC1 - hexokinase domain containing 1 protein-coding 318.001 chr11 126194357 126194549 + 1.66667 NA Intergenic L1MB8|LINE|L1 17197 NM_001363516 84881 Hs.150458 NM_032795 ENSG00000165526 RPUSD4 - RNA pseudouridine synthase D4 protein-coding 249.334-8 chr7 91330438 91330700 + 1.66667 NA Intergenic Intergenic 66136 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 1017.17 chr5 10856380 10857776 + 1.66667 NA Intergenic Intergenic -95844 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 233.666-5 chr3 59798316 59798774 + 1.66667 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -140048 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 338.334-6 chr7 3528472 3528786 + 1.66667 NA intron (NM_152744, intron 1 of 44) L2|LINE|L2 227377 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 507.167-3 chr5 10692020 10692929 + 1.66667 NA intron (NM_004394, intron 2 of 3) L3|LINE|CR1 68760 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 252.667-19 chr5 123159512 123159810 + 1.66667 NA intron (NM_001136239, intron 5 of 7) intron (NM_001136239, intron 5 of 7) -69345 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 271.167-12 chr19 38228638 38228946 + 1.66667 NA intron (NM_001363579, intron 1 of 11) CpG 903 NM_001363579 8193 Hs.631576 NM_004647 ENSG00000011332 DPF1 BAF45b|NEUD4|neuro-d4 double PHD fingers 1 protein-coding 353.001 chr6 56416411 56416757 + 1.66667 NA Intergenic Intergenic -22456 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 383.334-5 chr6 51387641 51387894 + 1.66667 NA Intergenic Intergenic -234103 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 182.5-2 chr1 147640877 147641146 + 1.66667 NA Intergenic Intergenic 29513 NR_136636 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 242.334 chr1 154534194 154534431 + 1.66667 NA intron (NM_182499, intron 6 of 12) L1ME3G|LINE|L1 -19297 NR_046668 100874097 NR_046668 ENSG00000229780 UBE2Q1-AS1 - UBE2Q1 antisense RNA 1 ncRNA 265.834-2 chr13 27128347 27128555 + 1.66667 NA intron (NR_046547, intron 1 of 2) intron (NR_046547, intron 1 of 2) 2918 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 235.834-4 chr14 62259734 62259906 + 1.66667 NA Intergenic L2b|LINE|L2 -119847 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 319.5-15 chr5 90394131 90394462 + 1.66667 NA intron (NM_004365, intron 4 of 4) intron (NM_004365, intron 4 of 4) 15490 NM_004365 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 276-14 chr2 60635094 60635421 + 1.66667 NA Intergenic Intergenic -81603 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 253.333-22 chr3 174071909 174072202 + 1.66667 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -151259 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 230-16 chr14 41286788 41286967 + 1.66667 NA Intergenic Intergenic -319979 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 300.834-13 chr4 131363051 131363247 + 1.66667 NA Intergenic L1MC3|LINE|L1 -401689 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 316.167-6 chr2 11015027 11015471 + 1.66667 NA Intergenic L1M5|LINE|L1 103315 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 294.667-16 chr2 101360510 101360951 + 1.66667 NA intron (NM_153836, intron 2 of 3) AluSx1|SINE|Alu 26773 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 401.501-3 chr5 74879629 74879994 + 1.66667 NA Intergenic L1M4|LINE|L1 -12845 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 491.5-3 chr5 135203980 135204547 + 1.66667 NA intron (NR_161235, intron 3 of 5) intron (NR_161235, intron 3 of 5) 43914 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 361.667-6 chr13 30828967 30829489 + 1.66667 NA Intergenic Intergenic 26022 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 254.667-24 chr4 82306544 82306786 + 1.66667 NA Intergenic L1MC5a|LINE|L1 67326 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 454.667-5 chr17 73710323 73710839 + 1.66667 NA Intergenic Intergenic -27273 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 294.667-22 chr5 126178241 126178529 + 1.66667 NA Intergenic Intergenic -1192 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 264.167-4 chr1 195675913 195676120 + 1.66667 NA Intergenic Intergenic 412699 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 213.167-18 chr3 115626054 115626267 + 1.66667 NA intron (NM_002045, intron 1 of 2) intron (NM_002045, intron 1 of 2) 2650 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 174.5-41 chr9 86678078 86678545 + 1.66667 NA Intergenic L2c|LINE|L2 269195 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 352.667-7 chr4 48340491 48340929 + 1.66667 NA promoter-TSS (NM_020846) promoter-TSS (NM_020846) -819 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 287.333-4 chr15 38262579 38263092 + 1.66667 NA intron (NM_152594, intron 1 of 6) intron (NM_152594, intron 1 of 6) 9999 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 248.167-12 chr2 209608658 209609048 + 1.66667 NA intron (NM_001039538, intron 3 of 14) intron (NM_001039538, intron 3 of 14) 29174 NM_001363911 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 215.833-3 chr1 155934408 155934606 + 1.66667 NA promoter-TSS (NM_014949) promoter-TSS (NM_014949) -94 NM_014949 22889 Hs.24656 NM_014949 ENSG00000132680 KHDC4 BLOM7|KIAA0907|SNORA80EHG KH domain containing 4, pre-mRNA splicing factor protein-coding 310.333-12 chr7 39525657 39525997 + 1.66667 NA Intergenic L1MB7|LINE|L1 -40577 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 592.834 chr5 2038278 2038865 + 1.66667 NA Intergenic CpG 151240 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 261.667-6 chr11 108110600 108110804 + 1.66667 NA Intergenic AluJr|SINE|Alu -10865 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 681.166-3 chr3 170809377 170810100 + 1.66667 NA Intergenic Intergenic 60457 NR_135259 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 315.834-4 chr16 62588995 62589268 + 1.66667 NA Intergenic Intergenic -552693 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 264.167-14 chr19 50383849 50384343 + 1.66667 NA promoter-TSS (NM_002691) promoter-TSS (NM_002691) -227 NM_001256849 5424 Hs.279413 NM_002691 ENSG00000062822 POLD1 CDC2|CRCS10|MDPL|POLD DNA polymerase delta 1, catalytic subunit protein-coding 599.667 chr11 17353660 17354517 + 1.66667 NA intron (NM_001202439, intron 1 of 4) intron (NM_001202439, intron 1 of 4) 2288 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 295.167-10 chr17 75323204 75323516 + 1.66667 NA intron (NM_203506, intron 3 of 4) intron (NM_203506, intron 3 of 4) -33911 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 320-15 chr5 5492274 5492599 + 1.66667 NA Intergenic Intergenic 69759 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 385.334-3 chr16 18796201 18796839 + 1.66667 NA intron (NM_015161, intron 3 of 5) intron (NM_015161, intron 3 of 5) 4850 NM_001313858 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 190.334-5 chr4 33330087 33330301 + 1.66667 NA Intergenic Intergenic 709699 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 185.334-2 chr16 73201348 73201597 + 1.66667 NA Intergenic MLT1K|LTR|ERVL-MaLR -57025 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 490 chr1 95056146 95056701 + 1.66667 NA intron (NM_001305242, intron 2 of 4) AluJb|SINE|Alu -5173 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 580.668-2 chr7 31630175 31630625 + 1.66667 NA intron (NM_194300, intron 8 of 12) intron (NM_194300, intron 8 of 12) -56617 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 412.334-7 chr4 154399392 154399646 + 1.66667 NA intron (NM_001358235, intron 1 of 19) intron (NM_001358235, intron 1 of 19) 92280 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 299.333-4 chr11 43642653 43642972 + 1.66667 NA Intergenic Intergenic -37926 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 202-8 chr10 100170000 100170345 + 1.66667 NA intron (NR_144757, intron 5 of 10) intron (NR_144757, intron 5 of 10) 15857 NM_001100626 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 517.501 chr1 983957 984547 + 1.66667 NA Intergenic Intergenic -2159 NM_001369897 84808 Hs.271462 NM_032722 ENSG00000187642 PERM1 C1orf170 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding 249.334-4 chr14 62373554 62373789 + 1.66667 NA Intergenic Intergenic -233698 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 223-40 chr7 17492527 17492794 + 1.66667 NA intron (NR_110013, intron 1 of 3) MIR3|SINE|MIR 66249 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 283.667-4 chr14 54358568 54358868 + 1.66667 NA Intergenic L1MA8|LINE|L1 -38150 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 309.167-10 chr18 28925996 28926314 + 1.66667 NA Intergenic MLT1J2|LTR|ERVL-MaLR -749025 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 218.667-18 chr2 114175509 114175677 + 1.66667 NA Intergenic Intergenic -195609 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 367.001 chr12 34347457 34347759 + 1.66667 NA Intergenic Intergenic 325112 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 324.167-4 chr11 8099480 8099729 + 1.66667 NA intron (NM_177972, intron 9 of 11) L2a|LINE|L2 18242 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 293.667-19 chr5 23267698 23268118 + 1.66667 NA Intergenic Intergenic -239701 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 215.167 chr1 76971227 76971419 + 1.66667 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) -88820 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 552.667 chr1 175317364 175317870 + 1.66667 NA 3' UTR (NM_001328635, exon 23 of 23) 3' UTR (NM_001328635, exon 23 of 23) -124630 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 438.834 chr2 43206949 43207527 + 1.66667 NA Intergenic AluSz|SINE|Alu 19368 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 205.334-3 chr1 106122689 106122952 + 1.66667 NA Intergenic Intergenic -94567 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 237.834-9 chr5 135489176 135489576 + 1.66667 NA Intergenic CpG -37025 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 391.834-5 chr20 17281087 17281745 + 1.66667 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 54376 NM_001201529 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 322.5-18 chr3 63322909 63323216 + 1.66667 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 44754 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 225.333-12 chr11 93726434 93726709 + 1.66667 NA intron (NM_033395, intron 23 of 29) intron (NM_033395, intron 23 of 29) 4075 NR_003028 684959 Hs.738736 NR_003028 ENSG00000207112 SNORA25 ACA25|SNORA25A small nucleolar RNA, H/ACA box 25 snoRNA 274.167-9 chr2 177626100 177626310 + 1.66667 NA 3' UTR (NM_001077196, exon 17 of 17) 3' UTR (NM_001077196, exon 17 of 17) -7463 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 303.834-9 chr8 123824359 123824549 + 1.66667 NA Intergenic L2a|LINE|L2 -27533 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 192.333-27 chr2 29585983 29586311 + 1.66667 NA intron (NM_004304, intron 3 of 28) L1ME4a|LINE|L1 -110770 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 239.167-9 chr11 121099858 121100051 + 1.66667 NA Intergenic Intergenic -2712 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 441-2 chr18 47342399 47342889 + 1.66667 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) -37852 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 326.334-3 chr14 96687704 96687953 + 1.66667 NA Intergenic Intergenic -53363 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 274-42 chr9 95181479 95181656 + 1.66667 NA intron (NM_001243744, intron 4 of 13) MIR3|SINE|MIR -95473 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 321.833-8 chr20 37993211 37993567 + 1.66667 NA intron (NM_001303457, intron 7 of 7) intron (NM_001303457, intron 7 of 7) 40067 NM_014657 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 228.667-18 chr2 27688079 27688336 + 1.66667 NA intron (NM_018158, intron 11 of 13) intron (NM_018158, intron 11 of 13) -24367 NM_001282732 9913 Hs.6232 NM_014860 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H SPT7 like, STAGA complex gamma subunit protein-coding 278.834-9 chr5 122515889 122516310 + 1.66667 NA Intergenic Intergenic -37012 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 190.167-20 chr6 38807864 38808110 + 1.66667 NA intron (NM_001371, intron 23 of 91) L1ME3D|LINE|L1 92676 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 242.5-40 chr5 158173962 158174283 + 1.66667 NA Intergenic MER117|DNA|hAT-Charlie 235651 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 226.333-15 chr3 35047229 35047457 + 1.66667 NA intron (NR_110817, intron 2 of 3) L1ME3D|LINE|L1 346680 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 286.167-16 chr5 72366314 72366578 + 1.66667 NA 3' UTR (NM_001284403, exon 7 of 7) 3' UTR (NM_001284403, exon 7 of 7) 46073 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 285-13 chr20 51752264 51752547 + 1.66667 NA intron (NM_006045, intron 1 of 27) L2a|LINE|L2 15985 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 328.334-3 chr2 9285526 9286064 + 1.66667 NA intron (NM_003887, intron 2 of 27) intron (NM_003887, intron 2 of 27) 78983 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 311.334 chr1 97870122 97870398 + 1.66667 NA intron (NM_000110, intron 2 of 22) intron (NM_000110, intron 2 of 22) 50799 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 165.833-14 chr15 92718502 92718644 + 1.66667 NA Intergenic Intergenic -62798 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 316.667-13 chr5 147308585 147308864 + 1.66667 NA intron (NM_001112724, intron 4 of 12) L1ME3B|LINE|L1 73698 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 194-23 chr2 70643873 70643995 + 1.66667 NA Intergenic Intergenic -90108 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 386.667-3 chr14 64518076 64518480 + 1.66667 NA intron (NR_110550, intron 3 of 3) intron (NR_110550, intron 3 of 3) -13065 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 481.999 chr11 36202836 36203318 + 1.66667 NA intron (NM_001304264, intron 4 of 5) AluJr4|SINE|Alu 86347 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 466.333 chr19 47428047 47428459 + 1.66667 NA 3' UTR (NM_015063, exon 10 of 10) 3' UTR (NM_015063, exon 10 of 10) -6020 NM_001346148 56917 Hs.380923 NM_020160 ENSG00000105419 MEIS3 MRG2 Meis homeobox 3 protein-coding 453.667-6 chr7 109091121 109091511 + 1.66667 NA Intergenic Intergenic -206729 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 294.5-22 chr5 75735017 75735401 + 1.66667 NA Intergenic Intergenic -17772 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 289.167-15 chr6 65157448 65157664 + 1.66667 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -143862 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 256.333-12 chr2 115688051 115688241 + 1.66667 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 344331 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 341.167-12 chr5 111013460 111013695 + 1.66667 NA Intergenic Intergenic -56503 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 522.5-2 chr22 30667244 30667801 + 1.66667 NA 5' UTR (NM_001304795, exon 1 of 3) 5' UTR (NM_001304795, exon 1 of 3) 353 NM_001304795 150290 Hs.517544 NM_152511 ENSG00000167065 DUSP18 DSP18|DUSP20|LMWDSP20 dual specificity phosphatase 18 protein-coding 273.334-6 chr5 110424149 110424396 + 1.66667 NA intron (NM_001039763, intron 13 of 13) intron (NM_001039763, intron 13 of 13) 89643 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 358.333 chr15 67816291 67816624 + 1.66667 NA Intergenic L1MB8|LINE|L1 -9052 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 355.667-4 chr19 32809714 32809982 + 1.66667 NA intron (NM_001366102, intron 22 of 32) intron (NM_001366102, intron 22 of 32) 59919 NM_001126335 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 187.333-35 chr6 11093745 11094131 + 1.66667 NA 5' UTR (NM_001135575, exon 1 of 2) 5' UTR (NM_001135575, exon 1 of 2) 104 NM_001135575 221710 Hs.656600 NM_001135575 ENSG00000224531 SMIM13 C6orf228 small integral membrane protein 13 protein-coding 441.666-3 chr21 27417475 27418068 + 1.66667 NA Intergenic Intergenic -304608 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 354.5-10 chr6 38032819 38033286 + 1.66667 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 213325 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 350.834-2 chr16 81053307 81053623 + 1.66667 NA TTS (NM_001100873) TTS (NM_001100873) 16267 NM_001300728 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 400.667-9 chr6 27668604 27669076 + 1.66667 NA Intergenic Intergenic -25195 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 423.333-9 chr5 52858857 52859149 + 1.66667 NA intron (NM_181501, intron 2 of 28) MIR|SINE|MIR 71087 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 460.334-2 chr14 47332939 47333323 + 1.66667 NA intron (NM_001113498, intron 1 of 16) L1PB4|LINE|L1 10115 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 430.5-4 chr2 181891234 181891668 + 1.66667 NA promoter-TSS (NM_001130445) promoter-TSS (NM_001130445) -279 NM_001130445 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 200.5-25 chr2 96660759 96661124 + 1.66667 NA intron (NM_001293083, intron 10 of 52) intron (NM_001293083, intron 10 of 52) 18177 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 259.834-6 chr4 80294986 80295185 + 1.66667 NA Intergenic Intergenic 26820 NM_001291812 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 326-2 chr14 52790684 52790990 + 1.66667 NA intron (NM_198066, intron 1 of 5) intron (NM_198066, intron 1 of 5) 770 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 228.5-23 chr4 20754760 20755028 + 1.66667 NA intron (NM_025221, intron 3 of 7) intron (NM_025221, intron 3 of 7) 54436 NM_001130727 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 370-3 chr15 50675415 50675923 + 1.66667 NA intron (NR_149154, intron 1 of 37) intron (NR_149154, intron 1 of 37) 11128 NR_149154 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 453.666 chr14 48027013 48027496 + 1.66667 NA Intergenic LTR67B|LTR|ERVL -232240 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 303.834-3 chr20 46500683 46501146 + 1.66667 NA 3' UTR (NM_001353824, exon 5 of 5) 3' UTR (NM_001353824, exon 5 of 5) 12658 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 218.334-7 chr3 12588622 12588957 + 1.66667 NA intron (NR_148942, intron 12 of 16) MSTB1|LTR|ERVL-MaLR 31702 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 235-35 chr8 123670498 123671051 + 1.66667 NA Intergenic AluSz6|SINE|Alu -16973 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 302-19 chr5 28272488 28272772 + 1.66667 NA Intergenic Intergenic 15035 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 214.167-12 chr2 32190044 32190212 + 1.66667 NA intron (NM_001330476, intron 2 of 10) L1ME3A|LINE|L1 24264 NM_001330477 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 243.333-23 chr2 77009206 77009466 + 1.66667 NA non-coding (NR_110284, exon 4 of 4) non-coding (NR_110284, exon 4 of 4) 23371 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 204.333-8 chr12 11446385 11446605 + 1.66667 NA intron (NR_148969, intron 2 of 4) intron (NR_148969, intron 2 of 4) 40183 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 279.334-6 chr3 152509751 152509932 + 1.66667 NA Intergenic L2a|LINE|L2 -168851 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 199.334 chr14 54446314 54446479 + 1.66667 NA Intergenic Intergenic -5022 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 278.166-4 chr6 42877245 42877621 + 1.66667 NA Intergenic AluSz6|SINE|Alu -2183 NR_134563 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 270.334 chr1 108187263 108187505 + 1.66667 NA intron (NM_013386, intron 1 of 9).2 L1M5|LINE|L1 5451 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 257.834 chr1 206982327 206982679 + 1.66667 NA Intergenic Intergenic -11878 NM_032029 83953 Hs.145519 NM_032029 ENSG00000162897 FCAMR CD351|FCA/MR|FKSG87 Fc fragment of IgA and IgM receptor protein-coding 404.667-4 chr2 57786536 57786847 + 1.66667 NA Intergenic Intergenic -120960 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 444.834-2 chr8 129938174 129938748 + 1.66667 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 1350 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 370.334-4 chr2 43091557 43091997 + 1.66667 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 10668 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 351.334-4 chr20 33095868 33096283 + 1.66667 NA intron (NM_182519, intron 10 of 15) intron (NM_182519, intron 10 of 15) 14563 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 224-15 chr14 83638586 83639058 + 1.66667 NA Intergenic THE1D|LTR|ERVL-MaLR 996190 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 216.834-7 chr2 61973321 61973619 + 1.66667 NA intron (NM_152516, intron 1 of 2) L1ME3C|LINE|L1 67828 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 478.834 chr11 122108381 122108786 + 1.66667 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) -2967 NR_137195 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 279.834-4 chr14 68250101 68250468 + 1.66667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 378503 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 225.667-30 chr4 111306383 111306706 + 1.66667 NA Intergenic L1M3d|LINE|L1 -445897 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 463.167 chr11 41839223 41839889 + 1.66667 NA Intergenic L1MA8|LINE|L1 124988 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 525.667-3 chrX 150683710 150684189 + 1.66667 NA Intergenic L1M1|LINE|L1 -9013 NM_001353994 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 190.834-6 chr22 35359617 35359773 + 1.66667 NA Intergenic Intergenic -21401 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 391.834 chr1 26029691 26030079 + 1.66667 NA intron (NM_004455, intron 3 of 10) intron (NM_004455, intron 3 of 10) 8110 NM_004455 2134 Hs.150956 NM_004455 ENSG00000158008 EXTL1 EXTL exostosin like glycosyltransferase 1 protein-coding 401.334 chr17 68019459 68019954 + 1.66667 NA Intergenic L1MA4|LINE|L1 -16029 NM_002266 3838 Hs.594238 NM_002266 ENSG00000182481 KPNA2 IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha karyopherin subunit alpha 2 protein-coding 200.834-9 chr8 64842086 64842246 + 1.66667 NA Intergenic Intergenic -43429 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 214.5-14 chr15 67912410 67912660 + 1.66667 NA Intergenic L1MC4|LINE|L1 -72490 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 196-10 chr13 101450352 101450557 + 1.66667 NA Intergenic Intergenic -2139 NM_001271755 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 306.501-3 chr12 126668455 126668679 + 1.66667 NA intron (NR_110034, intron 1 of 2) intron (NR_110034, intron 1 of 2) 21751 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 237.334 chr11 10066659 10066927 + 1.66667 NA intron (NM_030962, intron 2 of 39) L1MEc|LINE|L1 227414 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 409-2 chr14 57066812 57067353 + 1.66667 NA Intergenic Intergenic 201823 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 260.166-2 chr1 246566262 246566645 + 1.66667 NA promoter-TSS (NM_022366) promoter-TSS (NM_022366) -3 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 465.835 chr7 37074286 37074635 + 1.66667 NA intron (NM_001206480, intron 15 of 21) L2a|LINE|L2 76664 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 603.667-2 chr5 8907293 8907929 + 1.66667 NA Intergenic Intergenic 67879 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 208.001 chr14 67490157 67490306 + 1.66667 NA intron (NM_001348546, intron 1 of 2) intron (NM_001348546, intron 1 of 2) -1510 NM_001348541 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 425.667-3 chr6 49530615 49530957 + 1.66667 NA Intergenic L1M5|LINE|L1 -19882 NM_001145652 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 250.667-20 chr2 108565241 108565565 + 1.66667 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) -22903 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 402.333-6 chr7 140926886 140927548 + 1.66667 NA Intergenic MIRc|SINE|MIR -2288 NR_148928 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 453.667-4 chr22 41533031 41533603 + 1.66667 NA intron (NM_001018050, intron 2 of 5) intron (NM_001018050, intron 2 of 5) 11153 NM_001018050 171568 Hs.712617 NM_138338 ENSG00000100413 POLR3H RPC22.9|RPC8 RNA polymerase III subunit H protein-coding 253.167-16 chr4 123028197 123028490 + 1.66667 NA exon (NM_145207, exon 11 of 16) exon (NM_145207, exon 11 of 16) 105265 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 203.333-18 chr12 40301302 40301496 + 1.66667 NA intron (NM_198578, intron 25 of 50) AluSc5|SINE|Alu 76402 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 239.334-2 chr12 9101274 9101497 + 1.66667 NA intron (NM_000014, intron 12 of 35) intron (NM_000014, intron 12 of 35) 14844 NM_001347423 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 246.167-27 chr4 109793474 109793825 + 1.66667 NA intron (NM_001331035, intron 1 of 11) AluJo|SINE|Alu 8350 NM_001331035 3426 Hs.312485 NM_000204 ENSG00000205403 CFI AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF complement factor I protein-coding 338.334-3 chr11 72253844 72254109 + 1.66667 NA Intergenic Intergenic -9800 NM_005169 401 Hs.731115 NM_005169 ENSG00000165462 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired like homeobox 2A protein-coding 374.167-8 chr5 81389024 81389375 + 1.66667 NA intron (NM_130767, intron 1 of 14) L2a|LINE|L2 4935 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 323.667-22 chr5 136086516 136086842 + 1.66667 NA Intergenic L1ME1|LINE|L1 -6081 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 259.167-2 chr14 70240986 70241256 + 1.66667 NA Intergenic Intergenic 6680 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 461.334-2 chr20 4092002 4092481 + 1.66667 NA Intergenic AluJr|SINE|Alu -56538 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 381-3 chr10 83357870 83358182 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 319063 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 219.667-17 chr2 39013949 39014126 + 1.66667 NA intron (NM_005633, intron 11 of 22) intron (NM_005633, intron 11 of 22) -53693 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 323.667-3 chr1 75989685 75989960 + 1.66667 NA Intergenic Intergenic -21502 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 284.667-3 chr1 107883299 107883948 + 1.66667 NA intron (NM_006113, intron 1 of 26) (ATATTA)n|Simple_repeat|Simple_repeat -13600 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 164-20 chr15 38714309 38714426 + 1.66667 NA Intergenic (TTGC)n|Simple_repeat|Simple_repeat 17769 NR_160786 275-19 chr22 50371604 50371870 + 1.66667 NA intron (NM_001242899, intron 1 of 22) AluJb|SINE|Alu 28410 NM_001351648 9701 Hs.449098 NM_014678 ENSG00000100239 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6 regulatory subunit 2 protein-coding 302.5-20 chr8 144104704 144105044 + 1.66667 NA intron (NM_032272, intron 1 of 7) CpG 413 NM_032272 84232 Hs.19673 NM_032272 ENSG00000179632 MAF1 - MAF1 homolog, negative regulator of RNA polymerase III protein-coding 440.334-5 chr6 163152156 163152590 + 1.66667 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 39629 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 282.667-9 chr11 97340815 97341326 + 1.66667 NA Intergenic Intergenic 832645 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 346.167-7 chr2 230137906 230138306 + 1.66667 NA Intergenic Intergenic -69182 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 443.334-7 chr6 37212529 37212941 + 1.66667 NA non-coding (NR_104442, exon 3 of 3) non-coding (NR_104442, exon 3 of 3) 42583 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 164.333-55 chr9 36330152 36330379 + 1.66667 NA Intergenic L1ME3A|LINE|L1 -53209 NM_001190388 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 379.834-2 chr4 742402 742748 + 1.66667 NA intron (NM_001317836, intron 7 of 11) intron (NM_001317836, intron 7 of 11) 36743 NM_006315 10336 Hs.144309 NM_006315 ENSG00000185619 PCGF3 DONG1|RNF3|RNF3A polycomb group ring finger 3 protein-coding 643.5 chr1 115052373 115053122 + 1.66667 NA intron (NM_001308316, intron 6 of 6) intron (NM_001308316, intron 6 of 6) 18801 NM_001277991 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 183.667-35 chr3 16148871 16149099 + 1.66667 NA Intergenic Intergenic -25695 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 278.667-18 chr20 50483797 50484280 + 1.66667 NA Intergenic (TCTTCC)n|Simple_repeat|Simple_repeat -26283 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 262-28 chr8 136430339 136430552 + 1.66667 NA Intergenic L1M1|LINE|L1 -100353 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 211.334-2 chr10 121698559 121698821 + 1.66667 NA Intergenic Intergenic -100232 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 745.501 chr1 45687868 45688681 + 1.66667 NA promoter-TSS (NM_016486) promoter-TSS (NM_016486) 93 NM_016486 51249 Hs.699548 NM_016486 ENSG00000159596 TMEM69 C1orf154 transmembrane protein 69 protein-coding 313.001-3 chr2 197075699 197075953 + 1.66667 NA intron (NR_160034, intron 16 of 28) hAT-N1_Mam|DNA|hAT-Tip100? -122165 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 242.834-7 chr5 31247285 31247499 + 1.66667 NA intron (NM_001362435, intron 1 of 10) MIRb|SINE|MIR 53706 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 370.833-4 chr17 73134005 73134423 + 1.66667 NA Intergenic Intergenic -30796 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 276.5-11 chr20 49281104 49281355 + 1.66667 NA TTS (NR_003695) TTS (NR_003695) 546 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 279.333-24 chrX 44869133 44869415 + 1.66667 NA Intergenic Intergenic -3901 NM_001291417 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 329.334-4 chr20 17996251 17996490 + 1.66667 NA Intergenic Intergenic 27352 NM_001310338 92667 Hs.320823 NM_052865 ENSG00000125871 MGME1 C20orf72|DDK1|MTDPS11|bA504H3.4 mitochondrial genome maintenance exonuclease 1 protein-coding 371.667-8 chr6 72248342 72248666 + 1.66667 NA intron (NM_001350433, intron 7 of 25) intron (NM_001350433, intron 7 of 25) 31563 NM_001350473 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 272.333-9 chr20 38646927 38647330 + 1.66667 NA intron (NM_001164431, intron 13 of 14) intron (NM_001164431, intron 13 of 14) 45319 NM_001164431 343578 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 255-20 chr2 165463784 165463992 + 1.66667 NA Intergenic Intergenic -5810 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 232.834-12 chr6 128521673 128521889 + 1.66667 NA Intergenic Intergenic -1182 NM_001291984 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 367.167 chr2 119839384 119839772 + 1.66667 NA intron (NM_002830, intron 2 of 26) intron (NM_002830, intron 2 of 26) 79656 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 343.833 chr1 152141780 152142235 + 1.66667 NA Intergenic Intergenic 17221 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 266.334-3 chr4 107578574 107578779 + 1.66667 NA Intergenic L1ME3B|LINE|L1 141558 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 290.667-27 chr9 132412100 132412381 + 1.66667 NA intron (NM_001282957, intron 1 of 5) intron (NM_001282957, intron 1 of 5) 2029 NM_207417 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 407.667 chr1 73186595 73186967 + 1.66667 NA Intergenic Intergenic -119389 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 186.667-36 chr2 68579894 68580152 + 1.66667 NA 3' UTR (NM_173545, exon 10 of 10) 3' UTR (NM_173545, exon 10 of 10) -63565 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 451.333-2 chr1 109809893 109810191 + 1.66667 NA Intergenic A-rich|Low_complexity|Low_complexity -46119 NM_133181 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 284.334-4 chr18 69553781 69553974 + 1.66667 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) 83946 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 247.667-25 chr22 37497221 37497576 + 1.66667 NA intron (NM_014550, intron 11 of 19) L2b|LINE|L2 -11011 NM_001166343 4242 Hs.517603 NM_002405 ENSG00000100060 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 587.667-5 chr7 91829872 91830446 + 1.66667 NA Intergenic AluSq2|SINE|Alu 50543 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 238.333-32 chr4 92564443 92564745 + 1.66667 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 260195 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 224-49 chr9 28674848 28674994 + 1.66667 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 44384 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 280.5-2 chr1 168812538 168812832 + 1.66667 NA Intergenic Intergenic 25744 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 270.667-8 chr17 30000093 30000465 + 1.66667 NA intron (NR_026738, intron 7 of 15) intron (NR_026738, intron 7 of 15) 58645 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 527.167-3 chr2 189698203 189698903 + 1.66667 NA intron (NM_144708, intron 7 of 22) intron (NM_144708, intron 7 of 22) 22568 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 227.5-7 chr1 102044301 102044467 + 1.66667 NA Intergenic MIR|SINE|MIR -47150 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 214.834-5 chr2 30081037 30081195 + 1.66667 NA Intergenic L1M5|LINE|L1 -65891 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 506.667-4 chr14 77152123 77152635 + 1.66667 NA Intergenic MER91B|DNA|hAT-Tip100 -10588 NM_174976 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 292.167-9 chr18 49707759 49708222 + 1.66667 NA Intergenic Intergenic 105543 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 250.5-10 chr17 65796355 65796600 + 1.66667 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 29974 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 283.167 chr1 48674786 48675114 + 1.66667 NA intron (NM_001323575, intron 6 of 12) L2c|LINE|L2 101941 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 376.334-4 chr21 35139819 35140157 + 1.66667 NA Intergenic Intergenic -90690 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 280.834-8 chrX 110789117 110789289 + 1.66667 NA intron (NR_159734, intron 2 of 12) L1ME4b|LINE|L1 6614 NM_001367209 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 287.167-17 chr7 81715934 81716245 + 1.66667 NA intron (NM_001010932, intron 11 of 17) intron (NM_001010932, intron 11 of 17) -24683 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 189.667-56 chr8 122225628 122225822 + 1.66667 NA Intergenic L1MD|LINE|L1 342919 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 543.001 chr13 66673580 66674056 + 1.66667 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -151351 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 358.667-12 chr9 32572993 32573465 + 1.66667 NA promoter-TSS (NM_002493) promoter-TSS (NM_002493) -45 NM_001199987 4712 Hs.493668 NM_002493 ENSG00000165264 NDUFB6 B17|CI NADH:ubiquinone oxidoreductase subunit B6 protein-coding 175-59 chr9 101398635 101398906 + 1.66667 NA promoter-TSS (NM_019051) promoter-TSS (NM_019051) -81 NM_197977 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 251.334-2 chr1 47434751 47434952 + 1.66667 NA promoter-TSS (NR_026878) promoter-TSS (NR_026878) -210 NR_026878 84793 Hs.127762 NM_032707 ENSG00000237424 FOXD2-AS1 - FOXD2 adjacent opposite strand RNA 1 ncRNA 231-22 chr21 45082264 45082496 + 1.66667 NA intron (NM_001346688, intron 1 of 11) Tigger5b|DNA|TcMar-Tigger 7329 NM_001346688 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 350.334-10 chr4 32496189 32496554 + 1.66667 NA Intergenic Intergenic 145333 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 284-26 chr8 51815935 51816191 + 1.66667 NA Intergenic L1ME3E|LINE|L1 -6618 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 335.334-7 chr8 127200654 127201015 + 1.66667 NA Intergenic Intergenic -3207 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 352.5-5 chr12 87274534 87274806 + 1.66667 NA Intergenic Intergenic -56069 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 286.667-16 chr3 100743411 100743663 + 1.66667 NA intron (NM_001007565, intron 6 of 7) intron (NM_001007565, intron 6 of 7) 33995 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 298.667-13 chr21 23958968 23959182 + 1.66667 NA Intergenic Intergenic 362302 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 376.167-5 chr12 131755002 131755417 + 1.66667 NA intron (NM_004592, intron 9 of 17) MIR|SINE|MIR 44119 NM_004592 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 356.666-5 chr5 118986752 118987140 + 1.66667 NA intron (NM_173666, intron 1 of 5) intron (NM_173666, intron 1 of 5) 1274 NM_001308081 285605 Hs.655891 NM_173666 ENSG00000169570 DTWD2 - DTW domain containing 2 protein-coding 238.333-23 chr2 218229037 218229314 + 1.66667 NA intron (NM_152862, intron 4 of 10) intron (NM_152862, intron 4 of 10) 11778 NM_005731 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 534 chr5 25119644 25120267 + 1.66667 NA Intergenic Intergenic 70701 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 185-39 chr6 38402490 38402809 + 1.66667 NA intron (NM_052893, intron 7 of 11) L1MB7|LINE|L1 -78947 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 231.667-33 chr8 88767088 88767534 + 1.66667 NA Intergenic MER73|LTR|ERVL -439828 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 381-5 chr15 58987531 58987939 + 1.66667 NA promoter-TSS (NM_001330331) promoter-TSS (NM_001330331) 72 NM_001330331 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 273.5-21 chr9 80605129 80605521 + 1.66667 NA Intergenic Intergenic 630302 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 219.333-26 chr3 98972649 98972795 + 1.66667 NA Intergenic Intergenic -71027 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 704-2 chr2 65640153 65640939 + 1.66667 NA Intergenic Intergenic -207947 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 186.334-3 chr11 67142874 67143016 + 1.66667 NA intron (NR_027473, intron 2 of 20) L1MC5|LINE|L1 23682 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 573-2 chr10 110871725 110872253 + 1.66667 NA promoter-TSS (NM_014456) promoter-TSS (NM_014456) 61 NM_014456 27250 Hs.711490 NM_014456 ENSG00000150593 PDCD4 H731 programmed cell death 4 protein-coding 251.667-5 chr1 113737484 113737716 + 1.66667 NA intron (NM_001323046, intron 3 of 15) AluJb|SINE|Alu 21555 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 261-20 chr5 179540033 179540236 + 1.66667 NA intron (NR_131066, intron 3 of 5) L1MA9|LINE|L1 -10420 NM_025158 80230 Hs.306769 NM_025158 ENSG00000176783 RUFY1 RABIP4|ZFYVE12 RUN and FYVE domain containing 1 protein-coding 339.167-6 chr2 77990849 77991093 + 1.66667 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -35945 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 220.334-6 chr5 132866463 132866600 + 1.66667 NA promoter-TSS (NM_001288826) promoter-TSS (NM_001288826) 48 NM_001288828 2661 Hs.25022 NM_005260 ENSG00000164404 GDF9 POF14 growth differentiation factor 9 protein-coding 366.334-6 chr2 206088961 206089464 + 1.66667 NA Intergenic Intergenic -3038 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 485.167-2 chr14 35318999 35319363 + 1.66667 NA Intergenic AluSz|SINE|Alu 26799 NM_002791 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 238.167-10 chr14 72602772 72603042 + 1.66667 NA Intergenic Intergenic 86087 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 414.667-12 chr9 133875731 133876082 + 1.66667 NA intron (NM_001134398, intron 2 of 29) MLT2B1|LTR|ERVL 116418 NM_003371 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 417.334-3 chr8 108040798 108041181 + 1.66667 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 40950 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 227.667-28 chr22 37791865 37792075 + 1.66667 NA Intergenic MamGypLTR3a|LTR|Gypsy -13137 NM_005318 3005 Hs.745024 NM_005318 ENSG00000189060 H1F0 H10|H1FV H1 histone family member 0 protein-coding 230.334-10 chr7 33472095 33472283 + 1.66667 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 342625 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 273.334-5 chr4 87466653 87466872 + 1.66667 NA Intergenic FLAM_A|SINE|Alu 44165 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 369.001 chr10 102999725 103000070 + 1.66667 NA intron (NM_199076, intron 1 of 6) L1M4|LINE|L1 -81562 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 583.334-3 chr5 116557395 116558231 + 1.66667 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -16605 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 242.334-6 chr2 129147791 129147990 + 1.66667 NA Intergenic L1MA2|LINE|L1 126001 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 386.001-2 chr14 71586290 71586553 + 1.66667 NA 5' UTR (NM_001284246, exon 1 of 21) 5' UTR (NM_001284246, exon 1 of 21) 123 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 291.667-13 chr7 108600824 108601117 + 1.66667 NA Intergenic LTR82B|LTR|ERVL 31096 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 295-12 chr2 6819092 6819631 + 1.66667 NA Intergenic L1ME4b|LINE|L1 21103 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 560.334 chr7 92609406 92610469 + 1.66667 NA 3' UTR (NM_001145306, exon 8 of 8) 3' UTR (NM_001145306, exon 8 of 8) -19547 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 220-30 chr6 123117024 123117275 + 1.66667 NA Intergenic L1MEg|LINE|L1 120914 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 378-13 chr2 76793965 76794207 + 1.66667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -191879 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 681.834-2 chr8 140636156 140636779 + 1.66667 NA promoter-TSS (NM_012154) promoter-TSS (NM_012154) -834 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 272-4 chr1 164503803 164504052 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -55433 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 271-17 chr2 190019919 190020328 + 1.66667 NA Intergenic Intergenic 42606 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 274.667 chr1 28296791 28297032 + 1.66667 NA Intergenic Intergenic -32129 NM_017638 54797 Hs.479911 NM_017638 ENSG00000130772 MED18 SRB5|p28b mediator complex subunit 18 protein-coding 435.167-7 chr9 21253204 21253753 + 1.66667 NA Intergenic Intergenic -13473 NM_002172 3448 Hs.93907 NM_002172 ENSG00000228083 IFNA14 IFN-alphaH|LEIF2H interferon alpha 14 protein-coding 197.5-30 chr5 38304948 38305181 + 1.66667 NA intron (NM_152403, intron 1 of 21) HAL1|LINE|L1 -14078 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 401.167-2 chr1 175152702 175153150 + 1.66667 NA Intergenic Intergenic 39850 NM_014656 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 241.834-2 chr10 52860289 52860668 + 1.66667 NA Intergenic Intergenic -88778 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 366.666-3 chr21 34624960 34625266 + 1.66667 NA Intergenic Charlie7|DNA|hAT-Charlie -10000 NM_004414 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 248.167-26 chr9 86925618 86925838 + 1.66667 NA Intergenic Intergenic 21778 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 279.334-4 chr2 101439047 101439260 + 1.66667 NA intron (NM_001367509, intron 4 of 13) L1MD2|LINE|L1 35959 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 200.333-11 chr12 72295848 72296039 + 1.66667 NA intron (NM_013381, intron 2 of 18) intron (NM_013381, intron 2 of 18) -22434 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 197.334-10 chrX 65523046 65523257 + 1.66667 NA intron (NM_001170650, intron 9 of 11) intron (NM_001170650, intron 9 of 11) 11655 NM_031206 81887 Hs.522675 NM_031206 ENSG00000001497 LAS1L Las1-like|WTS|dJ475B7.2 LAS1 like, ribosome biogenesis factor protein-coding 299.167 chr1 25255210 25255504 + 1.66667 NA intron (NR_135788, intron 1 of 3) intron (NR_135788, intron 1 of 3) -7838 NR_135778 57035 Hs.259412 NM_020317 ENSG00000117616 RSRP1 C1orf63|NPD014 arginine and serine rich protein 1 protein-coding 358 chr1 93845076 93845675 + 1.66667 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -1457 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 255-12 chr12 47758991 47759195 + 1.66667 NA promoter-TSS (NM_001098531) promoter-TSS (NM_001098531) -213 NM_001098531 10411 Hs.8578 NM_006105 ENSG00000079337 RAPGEF3 CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910 Rap guanine nucleotide exchange factor 3 protein-coding 311.667-14 chr2 157055580 157055797 + 1.66667 NA Intergenic Intergenic -202017 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 357.333-6 chr17 61337727 61338093 + 1.66667 NA intron (NM_001330413, intron 23 of 25) MIRb|SINE|MIR 29794 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 323.001-2 chr2 30091728 30091934 + 1.66667 NA Intergenic MER4E1|LTR|ERV1 -55176 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 257-7 chr10 100181204 100181392 + 1.66667 NA intron (NR_144755, intron 2 of 11) intron (NR_144755, intron 2 of 11) 4731 NM_001100626 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 366-9 chr4 62701275 62701646 + 1.66667 NA Intergenic Intergenic -539695 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 678.666 chr10 70663799 70664802 + 1.66667 NA Intergenic MLT1L|LTR|ERVL-MaLR -8206 NM_080722 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 285-21 chr8 99862087 99862397 + 1.66667 NA intron (NM_017890, intron 58 of 61) intron (NM_017890, intron 58 of 61) 31465 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 414.334-4 chr16 53767879 53768256 + 1.66667 NA intron (NM_001363897, intron 1 of 7) L2b|LINE|L2 63911 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 521.5-2 chr3 28667717 28668339 + 1.66667 NA intron (NR_038840, intron 2 of 4) L2b|LINE|L2 92750 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 415.833-2 chr14 53978896 53979344 + 1.66667 NA Intergenic Intergenic -22229 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 221.667-43 chr7 37666592 37666776 + 1.66667 NA Intergenic Intergenic -17082 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 307.5-21 chr4 147518495 147518787 + 1.66667 NA intron (NM_001166055, intron 2 of 5) intron (NM_001166055, intron 2 of 5) 37544 NR_148964 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 185.167-7 chr11 124841267 124841474 + 1.66667 NA Intergenic L1MC5|LINE|L1 -24062 NM_022370 64221 Hs.435621 NM_022370 ENSG00000154134 ROBO3 HGPPS|HGPPS1|HGPS|RBIG1|RIG1 roundabout guidance receptor 3 protein-coding 397-20 chrX 12079989 12080873 + 1.66667 NA intron (NM_001368402, intron 1 of 17) intron (NM_001368402, intron 1 of 17) 14890 NM_001368402 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 491.667-2 chr11 27698732 27699108 + 1.66667 NA TTS (NR_033313) TTS (NR_033313) 747 NM_170734 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 277.5-27 chr9 11177089 11177329 + 1.66667 NA Intergenic Intergenic 564003 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 205.334-6 chr14 102438113 102438285 + 1.66667 NA exon (NM_001172631, exon 10 of 17) exon (NM_001172631, exon 10 of 17) 71577 NM_152326 122416 Hs.432945 NM_152326 ENSG00000156381 ANKRD9 - ankyrin repeat domain 9 protein-coding 404-2 chr10 50488492 50488997 + 1.66667 NA intron (NM_147156, intron 3 of 10) Tigger10|DNA|TcMar-Tigger 135212 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 237.667-7 chr13 98445095 98445538 + 1.66667 NA intron (NM_005766, intron 24 of 26) intron (NM_005766, intron 24 of 26) 76809 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 470.5-6 chr20 31951807 31952366 + 1.66667 NA promoter-TSS (NM_030815) promoter-TSS (NM_030815) -40 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 257.834-2 chr14 49720775 49721045 + 1.66667 NA intron (NM_172193, intron 4 of 12) L1MB4|LINE|L1 27790 NM_172193 122773 Hs.509258 NM_172193 ENSG00000197776 KLHDC1 MST025 kelch domain containing 1 protein-coding 208.667-38 chr6 42011019 42011424 + 1.66667 NA intron (NM_001136017, intron 1 of 4) AluJr4|SINE|Alu 37673 NM_001287434 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 389.834 chr19 10440244 10440651 + 1.66667 NA intron (NM_001111309, intron 1 of 14) AluSz|SINE|Alu 8012 NM_001111309 5141 Hs.89901 NM_006202 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A protein-coding 717.501 chr5 54649268 54649708 + 1.66667 NA Intergenic LTR12C|LTR|ERV1 53836 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 177.5-14 chr12 66381782 66381892 + 1.66667 NA intron (NM_001366722, intron 19 of 24) intron (NM_001366722, intron 19 of 24) 79292 NM_033647 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 191.667 chr1 30923667 30923844 + 1.66667 NA Intergenic AluJb|SINE|Alu 12021 NR_033295 692235 NR_033295 SNORD103B U103B small nucleolar RNA, C/D box 103B snoRNA 429.834-2 chr14 62861774 62862265 + 1.66667 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 183439 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 296.334-2 chr1 98864473 98864738 + 1.66667 NA Intergenic L1PB4|LINE|L1 -139671 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 495.5 chr9 36007223 36007783 + 1.66667 NA Intergenic Intergenic -29410 NM_001316348 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 349.001-2 chr3 94710401 94710669 + 1.66667 NA Intergenic Intergenic -227728 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 300.334-9 chrUn_KI270442v1 84417 84861 + 1.66667 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 454.167-2 chr16 23302795 23303134 + 1.66667 NA intron (NM_000336, intron 1 of 12) MIR|SINE|MIR 662 NM_000336 6338 Hs.414614 NM_000336 ENSG00000168447 SCNN1B BESC1|ENaCb|ENaCbeta|LIDLS1|SCNEB sodium channel epithelial 1 beta subunit protein-coding 591.501-2 chr20 6005490 6006092 + 1.66667 NA promoter-TSS (NM_001323564) promoter-TSS (NM_001323564) 30 NR_110101 101929225 Hs.635771 NR_110101 ENSG00000278719 MCM8-AS1 - MCM8 antisense RNA 1 ncRNA 496.333-3 chr2 152491939 152492373 + 1.66667 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 156982 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 214.5-6 chr11 59690194 59690530 + 1.66667 NA Intergenic L1M3d|LINE|L1 -21325 NM_152716 219988 Hs.591960 NM_152716 ENSG00000166889 PATL1 Pat1b|hPat1b PAT1 homolog 1, processing body mRNA decay factor protein-coding 530.834-2 chr11 50396861 50397344 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr -12045 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 262.167-6 chr14 23301347 23301549 + 1.66667 NA exon (NM_001276318, exon 2 of 5) exon (NM_001276318, exon 2 of 5) 1411 NM_001276318 90673 Hs.601513 NM_001276318 ENSG00000235194 PPP1R3E - protein phosphatase 1 regulatory subunit 3E protein-coding 656.501 chr3 172623036 172623688 + 1.66667 NA Intergenic A-rich|Low_complexity|Low_complexity -27755 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 190.334-2 chr14 69980998 69981158 + 1.66667 NA intron (NM_001034852, intron 5 of 11) GA-rich|Low_complexity|Low_complexity 2945 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 297.5-22 chr7 90045080 90045316 + 1.66667 NA intron (NR_110029, intron 2 of 2) L1MB1|LINE|L1 -74202 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 308.501-2 chr14 47916023 47916229 + 1.66667 NA Intergenic Intergenic -121112 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 175.333-4 chr10 26061276 26061480 + 1.66667 NA intron (NM_017433, intron 10 of 34) intron (NM_017433, intron 10 of 34) 127149 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 167.334-2 chr12 130825890 130826044 + 1.66667 NA intron (NM_001351051, intron 2 of 10) intron (NM_001351051, intron 2 of 10) 13283 NM_001351051 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 285.834 chr10 55396944 55397195 + 1.66667 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -201973 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 338.667-11 chr5 28694203 28694490 + 1.66667 NA Intergenic Intergenic -232524 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 561.167-5 chr5 152505132 152505858 + 1.66667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -100216 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 242.334-2 chr12 56677350 56677542 + 1.66667 NA intron (NM_001282601, intron 1 of 6) MER119|DNA|hAT-Charlie 10551 NR_104219 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding 310.167-10 chr7 80137945 80138329 + 1.66667 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 2353 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 220.333-25 chr6 27270601 27270828 + 1.66667 NA Intergenic Intergenic 23013 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP serine protease 16 protein-coding 447.833 chr11 9534911 9535319 + 1.66667 NA Intergenic Intergenic -38555 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 207.5-30 chr5 83145568 83145711 + 1.66667 NA intron (NM_001318012, intron 3 of 7) L1MEb|LINE|L1 68092 NM_022406 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 425.834-2 chr17 48125478 48125888 + 1.66667 NA Intergenic Intergenic 18098 NM_013323 29916 Hs.15827 NM_013323 ENSG00000002919 SNX11 - sorting nexin 11 protein-coding 231.5-16 chr17 8630787 8631065 + 1.66667 NA promoter-TSS (NM_001256095) promoter-TSS (NM_001256095) -165 NM_001256095 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 327.5-5 chr11 65427746 65427984 + 1.66667 NA non-coding (NR_131012, exon 1 of 1) non-coding (NR_131012, exon 1 of 1) 5067 NR_028272 283131 Hs.523789 NR_002802 ENSG00000245532 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 ncRNA 260-6 chr12 97757618 97757972 + 1.66667 NA Intergenic Intergenic -1278 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 320.667-8 chr12 281570 281788 + 1.66667 NA 3' UTR (NM_001042603, exon 28 of 28) 3' UTR (NM_001042603, exon 28 of 28) -18806 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 251.667-24 chr22 26471826 26472108 + 1.66667 NA intron (NR_146314, intron 6 of 14) intron (NR_146314, intron 6 of 14) 7521 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 374.5 chr10 60984592 60984997 + 1.66667 NA intron (NM_001350906, intron 2 of 12) MamRep434|DNA|TcMar-Tigger 16203 NM_001350903 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 388.334 chr1 82462094 82462377 + 1.66667 NA Intergenic Intergenic -440948 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 255.5-27 chr4 24687372 24687601 + 1.66667 NA Intergenic MER102b|DNA|hAT-Charlie -102932 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 194.5-19 chr14 61283865 61284338 + 1.66667 NA Intergenic Intergenic -2763 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 376-7 chr3 151361831 151362311 + 1.66667 NA intron (NM_053002, intron 19 of 42) L2a|LINE|L2 -21249 NM_176876 64805 Hs.591281 NM_022788 ENSG00000169313 P2RY12 ADPG-R|BDPLT8|HORK3|P2T(AC)|P2Y(12)R|P2Y(AC)|P2Y(ADP)|P2Y(cyc)|P2Y12|SP1999 purinergic receptor P2Y12 protein-coding 199.667-20 chr19 51236553 51237021 + 1.66667 NA TTS (NM_001177608) TTS (NM_001177608) 11707 NM_001177608 945 Hs.83731 NM_001772 ENSG00000105383 CD33 SIGLEC-3|SIGLEC3|p67 CD33 molecule protein-coding 567 chr10 16817392 16818003 + 1.66667 NA promoter-TSS (NM_012425) promoter-TSS (NM_012425) -243 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 235-15 chr2 43962457 43962674 + 1.66667 NA intron (NM_133259, intron 12 of 37) intron (NM_133259, intron 12 of 37) 33424 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 282.167-13 chr5 148732399 148732747 + 1.66667 NA Intergenic HAL1b|LINE|L1 -78046 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 237.667-12 chr16 85316333 85316569 + 1.66667 NA Intergenic Intergenic -10126 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 387.667-8 chr9 90050838 90051148 + 1.66667 NA Intergenic L1MDa|LINE|L1 -9494 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 513.167 chr1 32711660 32712583 + 1.66667 NA Intergenic MIRb|SINE|MIR -9351 NM_001161708 81493 Hs.712631 NM_030786 ENSG00000162520 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 327.334-9 chr8 28571200 28571437 + 1.66667 NA 3' UTR (NM_145866, exon 7 of 7) 3' UTR (NM_145866, exon 7 of 7) -66136 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 605.335 chr5 129135561 129136066 + 1.66667 NA Intergenic MSTB2|LTR|ERVL-MaLR 38125 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 292.834-3 chr14 67167972 67168264 + 1.66667 NA intron (NM_001024218, intron 19 of 21) MLT1B|LTR|ERVL-MaLR -21322 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 433.334-2 chr2 50207057 50207367 + 1.66667 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 140542 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 320.833-8 chr7 3065057 3065370 + 1.66667 NA Intergenic MamRep4096|DNA|hAT-Tip100 -21346 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 255.167-10 chr11 46296957 46297211 + 1.66667 NA intron (NM_052854, intron 1 of 11) intron (NM_052854, intron 1 of 11) 19422 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 286.167-15 chr5 40760920 40761232 + 1.66667 NA 3' UTR (NM_001355037, exon 9 of 9) 3' UTR (NM_001355037, exon 9 of 9) -5115 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 312.333-9 chr12 51891503 51892018 + 1.66667 NA TTS (NM_001304459) TTS (NM_001304459) 3657 NM_182608 341405 Hs.433492 NM_182608 ENSG00000167612 ANKRD33 C12orf7|PANKY ankyrin repeat domain 33 protein-coding 267.5-20 chr19 46537804 46538119 + 1.66667 NA intron (NM_001370550, intron 1 of 2) MLT1G1|LTR|ERVL-MaLR -42094 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 351 chr10 126597981 126598428 + 1.66667 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) 72306 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 450.667-5 chr4 153343945 153344538 + 1.66667 NA promoter-TSS (NR_045605) promoter-TSS (NR_045605) -408 NM_001253861 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 179.334 chr1 167207078 167207302 + 1.66667 NA Intergenic Tigger15a|DNA|TcMar-Tigger -11385 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 438.667-3 chr2 215088348 215088730 + 1.66667 NA intron (NR_103740, intron 2 of 54) intron (NR_103740, intron 2 of 54) 50087 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 356-13 chr2 45834468 45834783 + 1.66667 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 182950 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 310.833-4 chr13 53108902 53109256 + 1.66667 NA Intergenic Intergenic 42821 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 780.666 chr6 63574040 63574824 + 1.66667 NA intron (NM_003463, intron 1 of 5) intron (NM_003463, intron 1 of 5) 2420 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 352.834-2 chr14 30093493 30093832 + 1.66667 NA Intergenic L1MA2|LINE|L1 -165815 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 324.667-14 chr2 163904078 163904349 + 1.66667 NA Intergenic Intergenic -168205 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 224.334-8 chr5 21612274 21612455 + 1.66667 NA Intergenic PABL_A|LTR|ERV1 152884 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 378.334-3 chr12 4469167 4469455 + 1.66667 NA Intergenic L1ME2|LINE|L1 -23697 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 260-28 chr8 126579614 126580198 + 1.66667 NA Intergenic Intergenic -21428 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 201.667-14 chr15 88244391 88244745 + 1.66667 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) -8162 NR_038229 283738 Hs.578429 NR_038229 ENSG00000260305 NTRK3-AS1 - NTRK3 antisense RNA 1 ncRNA 344.667-6 chr14 24212906 24213179 + 1.66667 NA TTS (NM_001199821) TTS (NM_001199821) 446 NM_014169 29082 Hs.279761 NM_014169 ENSG00000254505 CHMP4A C14orf123|CHMP4|CHMP4B|HSPC134|SHAX2|SNF7|SNF7-1|VPS32-1|VPS32A charged multivesicular body protein 4A protein-coding 264.334 chr1 100920127 100920522 + 1.66667 NA intron (NM_133496, intron 7 of 10) intron (NM_133496, intron 7 of 10) 24234 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 384.667-8 chr6 17905984 17906272 + 1.66667 NA intron (NM_001105567, intron 2 of 36) Tigger11a|DNA|TcMar-Tigger 81507 NM_022113 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 273.167-7 chr19 52735155 52735452 + 1.66667 NA promoter-TSS (NM_001161501) promoter-TSS (NM_001161501) -249 NM_001161500 81856 Hs.143951 NM_030972 ENSG00000213020 ZNF611 - zinc finger protein 611 protein-coding 309.834-6 chr19 11293548 11293923 + 1.66667 NA Intergenic Intergenic -2425 NM_012466 26526 Hs.579784 NM_012466 ENSG00000130167 TSPAN16 TM-8|TM4-B|TM4SF16 tetraspanin 16 protein-coding 263.334-3 chr12 59499654 59499866 + 1.66667 NA Intergenic LTR8A|LTR|ERV1 -96269 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 255-17 chr18 58135955 58136368 + 1.66667 NA intron (NM_001144964, intron 1 of 30) intron (NM_001144964, intron 1 of 30) -13159 NM_001144965 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 421.334-6 chr6 91337849 91338180 + 1.66667 NA Intergenic Intergenic -183646 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 230.5-23 chr3 189270010 189270472 + 1.66667 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -29647 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 399.667-3 chr22 35298630 35299171 + 1.66667 NA promoter-TSS (NM_005488) promoter-TSS (NM_005488) -375 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 238.334-7 chr14 58231286 58231551 + 1.66667 NA intron (NM_018477, intron 11 of 12) intron (NM_018477, intron 11 of 12) -13387 NR_038123 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 345-6 chr15 76285468 76285823 + 1.66667 NA exon (NM_001127716, exon 6 of 11) exon (NM_001127716, exon 6 of 11) -25493 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 426.834-5 chrX 23782546 23782976 + 1.66667 NA promoter-TSS (NM_002970) promoter-TSS (NM_002970) -397 NM_002970 6303 Hs.28491 NM_002970 ENSG00000130066 SAT1 DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1 spermidine/spermine N1-acetyltransferase 1 protein-coding 331.667-3 chr1 195072812 195073085 + 1.66667 NA Intergenic L1PA5|LINE|L1 1015767 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 330.666-4 chr3 158539562 158539816 + 1.66667 NA intron (NM_001271838, intron 8 of 9) intron (NM_001271838, intron 8 of 9) 12981 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 181.667-35 chr5 22219967 22220099 + 1.66667 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -6183 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 356-20 chr7 29158018 29158317 + 1.66667 NA intron (NM_001293069, intron 2 of 13) intron (NM_001293069, intron 2 of 13) 11620 NM_001293069 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 305-4 chr10 29757783 29758018 + 1.66667 NA Intergenic Intergenic -20964 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 176.333-24 chr3 165381858 165382015 + 1.66667 NA intron (NR_125764, intron 2 of 5) MLT1D|LTR|ERVL-MaLR 174976 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 196.667-26 chr2 22569552 22569745 + 1.66667 NA Intergenic Intergenic 33169 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 200.5-19 chr16 72609578 72609824 + 1.66667 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 55269 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 315.667-16 chr8 3262230 3262512 + 1.66667 NA intron (NM_033225, intron 26 of 69) intron (NM_033225, intron 26 of 69) -533920 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 245.5-21 chr8 78334558 78334802 + 1.66667 NA Intergenic Intergenic -181660 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 307.334-2 chr11 88292240 88292525 + 1.66667 NA Intergenic Intergenic 45354 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 569.501 chr6 76682482 76683026 + 1.66667 NA Intergenic Intergenic -89131 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 547.001 chr1 81970600 81971045 + 1.66667 NA intron (NM_001366002, intron 15 of 20) intron (NM_001366002, intron 15 of 20) 168369 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 330.667-8 chr22 29152396 29152687 + 1.66667 NA intron (NM_032045, intron 9 of 9) intron (NM_032045, intron 9 of 9) -53355 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 261-24 chr8 105870098 105870346 + 1.66667 NA intron (NR_125796, intron 2 of 7) L1MC5|LINE|L1 190281 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 238.834-5 chr18 77212055 77212282 + 1.66667 NA Intergenic AluSx1|SINE|Alu -37680 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 359.667-3 chr2 18608205 18608532 + 1.66667 NA Intergenic Intergenic -18788 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 269.167-3 chr10 132637953 132638384 + 1.66667 NA intron (NM_005539, intron 2 of 15) L1MC4|LINE|L1 -43107 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 528.334-3 chr20 13945459 13946159 + 1.66667 NA intron (NR_073206, intron 2 of 20) L1MB2|LINE|L1 44805 NM_001271539 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 281.667-19 chr3 183248435 183248731 + 1.66667 NA intron (NM_015078, intron 15 of 29) AluJb|SINE|Alu -4670 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 224.667-33 chr20 55732985 55733214 + 1.66667 NA Intergenic Intergenic 272420 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 323-16 chr21 24513090 24513446 + 1.66667 NA intron (NR_135519, intron 1 of 2) L1MEc|LINE|L1 84528 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 223.834-4 chr12 96427500 96427656 + 1.66667 NA Intergenic Intergenic -27139 NM_002595 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 247.5-45 chr8 5534551 5534771 + 1.66667 NA Intergenic L1MC3|LINE|L1 -539747 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 168.167-17 chr2 68871849 68872056 + 1.66667 NA promoter-TSS (NM_014482) promoter-TSS (NM_014482) -555 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 279.667-2 chr1 164798865 164799087 + 1.66667 NA intron (NM_001204963, intron 3 of 8) intron (NM_001204963, intron 3 of 8) -24335 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 298-15 chr4 53498456 53498755 + 1.66667 NA intron (NM_001126328, intron 5 of 10) intron (NM_001126328, intron 5 of 10) -1472 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 443.335 chr13 46277785 46278134 + 1.66667 NA TTS (NM_001282460) TTS (NM_001282460) 19885 NR_047493 100861554 Hs.90866 NR_047493 ENSG00000261097 LINC00563 - long intergenic non-protein coding RNA 563 ncRNA 225.667-9 chr12 130993769 130994105 + 1.66667 NA promoter-TSS (NR_131950) promoter-TSS (NR_131950) 39 NR_131951 105755954 Hs.677534 NR_131950 ADGRD1-AS1 LACAT8 ADGRD1 antisense RNA 1 ncRNA 535.833-2 chr7 124875302 124875906 + 1.66667 NA intron (NM_015450, intron 6 of 18) Looper|DNA|PiggyBac 54221 NM_015450 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 737.501 chr15 65188685 65189510 + 1.66667 NA Intergenic Intergenic -3755 NM_006660 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 414.001 chr19 3665970 3666257 + 1.66667 NA intron (NM_001195733, intron 2 of 16) intron (NM_001195733, intron 2 of 16) 34355 NM_012398 23396 Hs.282177 NM_012398 ENSG00000186111 PIP5K1C LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma phosphatidylinositol-4-phosphate 5-kinase type 1 gamma protein-coding 239.167-2 chr1 119968589 119968825 + 1.66667 NA intron (NM_001200001, intron 6 of 21) intron (NM_001200001, intron 6 of 21) -72192 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 237-30 chr4 61615789 61616204 + 1.66667 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 413824 NM_001371342 178.666-3 chr22 28657062 28657276 + 1.66667 NA intron (NM_001145418, intron 1 of 22) MIR|SINE|MIR 22696 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 370.167-7 chr3 148712177 148712409 + 1.66667 NA intron (NM_000685, intron 2 of 2) intron (NM_000685, intron 2 of 2) 14422 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 465.168 chr11 104946866 104947455 + 1.66667 NA exon (NM_033306, exon 8 of 10) exon (NM_033306, exon 8 of 10) 21414 NM_001225 837 Hs.138378 NM_001225 ENSG00000196954 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX caspase 4 protein-coding 198 chr1 31184099 31184361 + 1.66667 NA intron (NM_024522, intron 3 of 6) intron (NM_024522, intron 3 of 6) 55657 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 325.168 chr8 31501978 31502281 + 1.66667 NA Intergenic L1MA1|LINE|L1 -137623 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 566.5-2 chr2 156411617 156412264 + 1.66667 NA Intergenic Intergenic -23612 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 206-9 chr13 76551895 76552228 + 1.66667 NA Intergenic MER75|DNA|PiggyBac 334344 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 470.501 chr5 73451075 73452204 + 1.66667 NA Intergenic CpG -2862 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 644.167 chr12 130748082 130748778 + 1.66667 NA Intergenic Intergenic -32125 NM_001351233 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 372.167-5 chr4 39977945 39978290 + 1.66667 NA promoter-TSS (NM_001100400) promoter-TSS (NM_001100400) -161 NM_001100400 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 288.334-7 chr15 40906326 40906566 + 1.66667 NA promoter-TSS (NR_135836) promoter-TSS (NR_135836) -363 NR_135836 105370943 Hs.574244 NR_135836 LOC105370943 - uncharacterized LOC105370943 ncRNA 203.667-26 chr2 100226881 100227087 + 1.66667 NA intron (NR_103730, intron 1 of 2) L1MC|LINE|L1 18730 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 478.333-2 chr5 12487435 12487998 + 1.66667 NA Intergenic L2a|LINE|L2 -87141 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 308.333-18 chr4 64310242 64310546 + 1.66667 NA intron (NM_001363796, intron 5 of 11) intron (NM_001363796, intron 5 of 11) 99056 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 288.667-5 chr12 129828249 129828528 + 1.66667 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 75637 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 316.667-8 chr20 56187744 56187962 + 1.66667 NA Intergenic Intergenic -60879 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 315.333-3 chr1 164144760 164145117 + 1.66667 NA Intergenic L1ME2|LINE|L1 -414422 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 349.333-10 chr7 103735324 103735709 + 1.66667 NA intron (NM_005045, intron 6 of 64) intron (NM_005045, intron 6 of 64) 254000 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 165.5-37 chr5 145814603 145814776 + 1.66667 NA intron (NM_205846, intron 4 of 6) HAL1b|LINE|L1 20653 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 673.667-2 chr5 41526958 41527770 + 1.66667 NA Intergenic MER41B|LTR|ERV1 -16763 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 324.001-2 chr2 182588155 182588398 + 1.66667 NA Intergenic Intergenic -65431 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 268.834-5 chr2 28482961 28483289 + 1.66667 NA Intergenic Intergenic -12935 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 288.501-4 chr3 6985859 6986080 + 1.66667 NA intron (NM_000844, intron 1 of 9) L1M3|LINE|L1 -91952 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 479.667-2 chr11 60193574 60194294 + 1.66667 NA Intergenic Intergenic -9268 NM_152852 64231 Hs.523702 NM_022349 ENSG00000110077 MS4A6A 4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090 membrane spanning 4-domains A6A protein-coding 297-22 chr4 133147513 133147841 + 1.66667 NA intron (NR_125885, intron 1 of 8) intron (NR_125885, intron 1 of 8) 1439 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 313.167-4 chr10 114937934 114938153 + 1.66667 NA promoter-TSS (NM_139169) promoter-TSS (NM_139169) -152 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 359.334-2 chr13 72255887 72256518 + 1.66667 NA Intergenic Intergenic -388998 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 299.667-12 chr9 81083222 81083473 + 1.66667 NA Intergenic Intergenic 606188 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 397.499-5 chrX 51336532 51336988 + 1.66667 NA 3' UTR (NM_001304963, exon 2 of 2) 3' UTR (NM_001304963, exon 2 of 2) 3938 NM_001304963 170685 Hs.375178 NM_153183 ENSG00000122824 NUDT10 APS2|DIPP3-alpha|DIPP3a nudix hydrolase 10 protein-coding 232.667-19 chr18 76454464 76454659 + 1.66667 NA intron (NM_014643, intron 2 of 6) intron (NM_014643, intron 2 of 6) -37091 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 377.167-9 chrX 13658543 13659018 + 1.66667 NA intron (NM_001297564, intron 2 of 2) intron (NM_001297564, intron 2 of 2) 5639 NM_001297564 170082 Hs.222855 NM_152634 ENSG00000176896 TCEANC - transcription elongation factor A N-terminal and central domain containing protein-coding 280.501-2 chr15 100523862 100524143 + 1.66667 NA intron (NM_001290341, intron 2 of 13) L1ME3A|LINE|L1 20284 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 251-9 chr17 58425989 58426372 + 1.66667 NA intron (NM_001080439, intron 5 of 5) intron (NM_001080439, intron 5 of 5) -8598 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 470.001-2 chr22 17084917 17085253 + 1.66667 NA 5' UTR (NM_001289905, exon 1 of 12) 5' UTR (NM_001289905, exon 1 of 12) 126 NM_001289905 23765 Hs.48353 NM_014339 ENSG00000177663 IL17RA CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R interleukin 17 receptor A protein-coding 236.667-15 chr22 34295418 34295685 + 1.66667 NA Intergenic L2a|LINE|L2 -372663 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 248.334-2 chr12 133075218 133075482 + 1.66667 NA Intergenic AluSc|SINE|Alu -4853 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 386.333-6 chr19 43754656 43755300 + 1.66667 NA promoter-TSS (NM_019108) promoter-TSS (NM_019108) -16 NM_019108 56006 Hs.466875 NM_019108 ENSG00000105771 SMG9 C19orf61|F17127_1|HBMS SMG9 nonsense mediated mRNA decay factor protein-coding 173-33 chr5 61332085 61332217 + 1.66667 NA promoter-TSS (NM_020928) promoter-TSS (NM_020928) -107 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 459.167-6 chr20 13883320 13883750 + 1.66667 NA intron (NM_001363752, intron 9 of 16) MIRb|SINE|MIR 98507 NR_147980 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 278.001-2 chr2 27017561 27017849 + 1.66667 NA intron (NM_001303050, intron 1 of 6) intron (NM_001303050, intron 1 of 6) 2951 NM_001303050 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 340.833-4 chr20 53897319 53897693 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -21797 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 402.667-12 chr20 46873139 46873594 + 1.66667 NA Intergenic Charlie7|DNA|hAT-Charlie -21258 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 294.167-5 chr15 63236541 63236825 + 1.66667 NA intron (NM_016530, intron 1 of 7) L1MA3|LINE|L1 -40867 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 240-37 chr3 162280290 162280641 + 1.66667 NA Intergenic L1PA16|LINE|L1 783657 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 405-10 chr20 46803246 46803650 + 1.66667 NA Intergenic Intergenic -91176 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 242.5-2 chr1 42185729 42185929 + 1.66667 NA intron (NM_001198850, intron 11 of 12) intron (NM_001198850, intron 11 of 12) -21084 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 265.333-13 chr21 37448323 37448681 + 1.66667 NA intron (NM_001347721, intron 2 of 11) intron (NM_001347721, intron 2 of 11) 28203 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 631.501 chr2 18149837 18150266 + 1.66667 NA Intergenic Intergenic 271384 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 313.667 chr10 44061498 44061735 + 1.66667 NA Intergenic Intergenic 149214 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 304.334-4 chr12 61500731 61501326 + 1.66667 NA Intergenic Intergenic 691811 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 223.667-28 chr2 49689355 49689537 + 1.66667 NA Intergenic L1MD1|LINE|L1 284757 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 512.833-4 chr3 8936935 8937733 + 1.66667 NA intron (NM_020165, intron 6 of 12) intron (NM_020165, intron 6 of 12) 26138 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 336.334-6 chr22 18057800 18058172 + 1.66667 NA Intergenic Intergenic -19934 NM_001199319 55670 Hs.517400 NM_017929 ENSG00000215193 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 350.834 chr1 106018764 106018975 + 1.66667 NA intron (NR_146609, intron 3 of 5) L1M1|LINE|L1 9384 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 180.834-7 chr6 155171188 155171523 + 1.66667 NA intron (NM_012454, intron 8 of 25) intron (NM_012454, intron 8 of 25) -45611 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 222.834-4 chr2 73290368 73290713 + 1.66667 NA TTS (NM_001965) TTS (NM_001965) 3008 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 309.5-9 chr2 189485506 189485947 + 1.66667 NA Intergenic Intergenic 44252 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 375-3 chr12 77152648 77153387 + 1.66667 NA Intergenic Intergenic -87448 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 239.334-3 chr14 61555460 61555771 + 1.66667 NA TTS (NR_110417) TTS (NR_110417) 14579 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 295.167-2 chr10 90848271 90848529 + 1.66667 NA intron (NM_019860, intron 1 of 2) L1ME3B|LINE|L1 9639 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 632-3 chr22 25772680 25773628 + 1.66667 NA intron (NM_001318245, intron 7 of 43) intron (NM_001318245, intron 7 of 43) 30966 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 381.001 chr1 157505863 157506188 + 1.66667 NA Intergenic HAL1ME|LINE|L1 46490 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 385.667-5 chr18 36284869 36285240 + 1.66667 NA Intergenic Intergenic -12659 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 353.5-3 chr10 9261099 9261746 + 1.66667 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -14191 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 216.667-2 chr1 210884247 210884511 + 1.66667 NA intron (NM_002238, intron 7 of 10) MIRc|SINE|MIR 248995 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 348.334-2 chr12 27495205 27495594 + 1.66667 NA intron (NM_001145010, intron 7 of 8) intron (NM_001145010, intron 7 of 8) 28589 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 284.333-8 chr14 43697204 43697416 + 1.66667 NA Intergenic L1MC1|LINE|L1 809973 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 486.167-4 chr5 181172781 181173554 + 1.66667 NA Intergenic Intergenic 18224 NM_206880 285659 Hs.553681 NM_206880 ENSG00000182613 OR2V2 OR2V3|OST713 olfactory receptor family 2 subfamily V member 2 protein-coding 556.167-2 chr11 110463349 110463767 + 1.66667 NA 3' UTR (NM_004109, exon 4 of 4) 3' UTR (NM_004109, exon 4 of 4) 33610 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 356.333-7 chr2 200679692 200680225 + 1.66667 NA Intergenic AluJo|SINE|Alu -15765 NR_135011 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 185.667-47 chr9 24832212 24832500 + 1.66667 NA Intergenic Intergenic -286459 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 378.5 chr10 68666097 68666622 + 1.66667 NA intron (NM_030625, intron 6 of 11) intron (NM_030625, intron 6 of 11) -54880 NR_104262 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 256-35 chrX 88543090 88543407 + 1.66667 NA Intergenic L1M3|LINE|L1 -203977 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 542.5-3 chr20 23340514 23340948 + 1.66667 NA Intergenic Intergenic -10060 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 347.334-3 chr14 89165658 89165941 + 1.66667 NA intron (NM_001085471, intron 6 of 6) intron (NM_001085471, intron 6 of 6) 251434 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 342.5-6 chr2 48291955 48292302 + 1.66667 NA Intergenic Intergenic -22554 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 398.334-7 chr8 53165722 53166425 + 1.66667 NA Intergenic L2c|LINE|L2 85564 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 278-32 chr9 79358734 79358972 + 1.66667 NA Intergenic Intergenic -212920 NM_001282753 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 459.667-5 chr7 90708544 90708975 + 1.66667 NA promoter-TSS (NM_012395) promoter-TSS (NM_012395) -639 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 246.667-2 chr1 72044807 72045085 + 1.66667 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -207934 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 280.834-7 chr7 133747402 133747602 + 1.66667 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 77386 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 253.333-8 chr14 52073130 52073430 + 1.66667 NA Intergenic Intergenic -4221 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 303.667-7 chr17 72550055 72550312 + 1.66667 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 42621 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 181.334-2 chr1 209186166 209186320 + 1.66667 NA Intergenic Intergenic -139213 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 306.167-5 chr16 78770736 78770948 + 1.66667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 671188 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 470.833-12 chr3 139329436 139330029 + 1.66667 NA Intergenic MIRc|SINE|MIR -14262 NM_001363893 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22 mitochondrial ribosomal protein S22 protein-coding 243-3 chr10 88389400 88389687 + 1.66667 NA intron (NM_018363, intron 4 of 6) MamGypsy2-I|LTR|Gypsy 193775 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 274.5-16 chr3 99172994 99173462 + 1.66667 NA Intergenic L1PREC2|LINE|L1 -271533 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 261.667-2 chr1 54971891 54972144 + 1.66667 NA Intergenic MERX|DNA|TcMar-Tigger -8611 NM_182532 199964 Hs.663950 NM_182532 ENSG00000143001 TMEM61 - transmembrane protein 61 protein-coding 267-26 chr5 97414008 97414357 + 1.66667 NA Intergenic Intergenic -90514 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 451.001 chr11 65558591 65559046 + 1.66667 NA promoter-TSS (NM_021070) promoter-TSS (NM_021070) -590 NM_001164266 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 234.167-3 chr10 26323294 26323484 + 1.66667 NA Intergenic Intergenic 106615 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 339.834-7 chr9 27616889 27617180 + 1.66667 NA Intergenic L2a|LINE|L2 -43168 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 210.667-39 chr5 118792207 118792452 + 1.66667 NA Intergenic Intergenic -182257 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 386.333-7 chr22 31082779 31083089 + 1.66667 NA promoter-TSS (NM_001207017) promoter-TSS (NM_001207017) 74 NM_001207017 6525 Hs.149098 NM_006932 ENSG00000183963 SMTN - smoothelin protein-coding 276.667-3 chr1 83026088 83026330 + 1.66667 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -40001 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 241.667-15 chr2 32471230 32471458 + 1.66667 NA intron (NM_016252, intron 32 of 73) intron (NM_016252, intron 32 of 73) -60809 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 242.5-11 chr11 35364102 35364337 + 1.66667 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 55339 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 184.834-8 chr8 84647001 84647139 + 1.66667 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -58857 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 487.834-5 chr6 76575642 76576081 + 1.66667 NA intron (NR_149101, intron 2 of 2) intron (NR_149101, intron 2 of 2) 17762 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 358.167-5 chr16 48621782 48622292 + 1.66667 NA Intergenic Intergenic -11857 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 278-28 chr8 81249771 81250059 + 1.66667 NA Intergenic Tigger2|DNA|TcMar-Tigger -30621 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 332.501 chr22 47555683 47555898 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -68679 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 230-25 chr2 63879631 63879866 + 1.66667 NA intron (NM_001001521, intron 3 of 9) L1ME3D|LINE|L1 37868 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 309.667-11 chr18 69362080 69362305 + 1.66667 NA Intergenic Intergenic -38696 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 183.334 chr1 61124106 61124350 + 1.66667 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 41667 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 181-29 chr22 38718569 38718849 + 1.66667 NA intron (NM_004286, intron 4 of 11) intron (NM_004286, intron 4 of 11) 12765 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 319.5-2 chr11 73054305 73054639 + 1.66667 NA intron (NM_014824, intron 3 of 19) LTR84a|LTR|ERVL 87846 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 438.334-2 chr10 101550688 101551148 + 1.66667 NA intron (NM_001256856, intron 13 of 13) intron (NM_001256856, intron 13 of 13) 37339 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 316.501-2 chr6 64471223 64471544 + 1.66667 NA intron (NM_001292009, intron 26 of 43) L1M2|LINE|L1 664547 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 214.167-22 chr4 52984419 52984606 + 1.66667 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 122195 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 287.834-3 chr18 12332682 12332980 + 1.66667 NA intron (NM_006796, intron 16 of 16) intron (NM_006796, intron 16 of 16) 24590 NM_001303526 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 339.333-9 chr20 18066286 18066631 + 1.66667 NA Intergenic L1MD2|LINE|L1 -7270 NM_001303461 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 542.668 chr8 21812190 21812657 + 1.66667 NA Intergenic Intergenic -23548 NM_001165039 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 365.166 chr10 68402264 68402554 + 1.66667 NA intron (NM_001278225, intron 1 of 11) intron (NM_001278225, intron 1 of 11) 4780 NM_017987 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 356-18 chr6 120534364 120534718 + 1.66667 NA Intergenic MIR3|SINE|MIR 519362 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 313.667-4 chr14 49727420 49727761 + 1.66667 NA intron (NM_172193, intron 6 of 12) intron (NM_172193, intron 6 of 12) 34470 NM_172193 122773 Hs.509258 NM_172193 ENSG00000197776 KLHDC1 MST025 kelch domain containing 1 protein-coding 170.666-7 chr6 35949044 35949269 + 1.66667 NA intron (NM_001193476, intron 19 of 19) AluSx1|SINE|Alu -27976 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 314.333-13 chr7 122903543 122903801 + 1.66667 NA Intergenic L2c|LINE|L2 -16913 NM_001167940 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 217.667-36 chr7 80682862 80683012 + 1.66667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 36284 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 351.499 chr6 41775853 41776145 + 1.66667 NA intron (NM_006653, intron 3 of 6) intron (NM_006653, intron 3 of 6) 3901 NM_006653 10817 Hs.194208 NM_006653 ENSG00000137218 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 836.001-2 chr18 5073030 5073868 + 1.66667 NA Intergenic Intergenic -7733 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 394.333-6 chr6 34459945 34460567 + 1.66667 NA Intergenic Intergenic -5820 NM_020804 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 378.167-4 chr20 49250168 49250446 + 1.66667 NA intron (NM_021035, intron 13 of 13) intron (NM_021035, intron 13 of 13) 27750 NM_021035 57169 Hs.371794 NM_021035 ENSG00000124201 ZNFX1 - zinc finger NFX1-type containing 1 protein-coding 929.667 chr17 76385558 76386506 + 1.66667 NA exon (NM_021972, exon 3 of 6) exon (NM_021972, exon 3 of 6) 754 NM_001142602 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 295-25 chr6 159440414 159440663 + 1.66667 NA Intergenic Intergenic 57007 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 411.667-10 chr4 94657906 94658412 + 1.66667 NA intron (NM_006457, intron 11 of 12) intron (NM_006457, intron 11 of 12) 99374 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 174-2 chr1 67749875 67750135 + 1.66667 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 64804 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 257.334-3 chr15 98294766 98294956 + 1.66667 NA Intergenic Intergenic 36697 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 193.667-51 chr8 106640055 106640344 + 1.66667 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -17609 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 290.667-7 chr15 69605422 69605714 + 1.66667 NA intron (NR_126438, intron 1 of 3) intron (NR_126438, intron 1 of 3) 13368 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 362.501-3 chr16 11651560 11651794 + 1.66667 NA Intergenic Intergenic -16778 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 346-2 chr12 121888773 121889185 + 1.66667 NA promoter-TSS (NM_001171993) promoter-TSS (NM_001171993) 189 NM_002813 5715 Hs.131151 NM_002813 ENSG00000110801 PSMD9 Rpn4|p27 proteasome 26S subunit, non-ATPase 9 protein-coding 213-2 chr1 157969602 157970080 + 1.66667 NA Intergenic MIRb|SINE|MIR -23432 NM_001286349 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL1 KIRREL|NEPH1 kirre like nephrin family adhesion molecule 1 protein-coding 398.334-5 chr8 5932847 5933329 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger 473460 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 287-3 chr10 117980451 117980771 + 1.66667 NA Intergenic MLT1I|LTR|ERVL-MaLR -66210 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 199-15 chr16 61938742 61939052 + 1.66667 NA intron (NM_001796, intron 2 of 11) MIR|SINE|MIR 97541 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 352-13 chr7 129569513 129569877 + 1.66667 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -42025 NM_005011 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 413.334-5 chr12 90944312 90944863 + 1.66667 NA intron (NR_038868, intron 3 of 4) intron (NR_038868, intron 3 of 4) 10589 NR_130711 196477 Hs.128574 NM_152638 ENSG00000197651 CCER1 C12orf12 coiled-coil glutamate rich protein 1 protein-coding 524.334-2 chr4 83260496 83261138 + 1.66667 NA Intergenic Intergenic 23978 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 198.333-8 chr10 79365114 79365290 + 1.66667 NA Intergenic L1MB8|LINE|L1 17733 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 199.167-29 chr8 131022524 131022658 + 1.66667 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 18318 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 421.501 chr13 50764089 50764626 + 1.66667 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -43498 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 260.167-10 chr16 85330783 85331190 + 1.66667 NA Intergenic Intergenic -24661 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 321.667-9 chr6 127122414 127122752 + 1.66667 NA intron (NM_032784, intron 1 of 4) intron (NM_032784, intron 1 of 4) 3912 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 308.667-16 chr7 29450296 29450709 + 1.66667 NA intron (NM_001293072, intron 6 of 12) MLT1D|LTR|ERVL-MaLR -29210 NR_120525 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 272.167-5 chr11 115483461 115483674 + 1.66667 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 20848 NM_014333 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 498-3 chr11 74388514 74389112 + 1.66667 NA intron (NM_173582, intron 1 of 13) intron (NM_173582, intron 1 of 13) 9620 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 505-5 chr20 37244858 37245353 + 1.66667 NA Intergenic MIRb|SINE|MIR 11803 NM_021081 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 216.667 chr1 45026311 45026632 + 1.66667 NA intron (NM_020883, intron 11 of 13) L1MC2|LINE|L1 14217 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 168.334-11 chr8 126134165 126134283 + 1.66667 NA Intergenic Intergenic -183027 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 227.667-25 chr2 193614817 193614993 + 1.66667 NA Intergenic Intergenic -729364 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 280-26 chrX 124589600 124589885 + 1.66667 NA intron (NM_014253, intron 11 of 30) L1PA16|LINE|L1 243460 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 909.166 chr15 90934203 90935485 + 1.66667 NA promoter-TSS (NM_018671) promoter-TSS (NM_018671) -42 NM_001323621 55898 Hs.389461 NM_017979 ENSG00000140553 UNC45A GC-UNC45|GCUNC-45|GCUNC45|IRO039700|SMAP-1|SMAP1|UNC-45A unc-45 myosin chaperone A protein-coding 322.5-21 chr4 55901651 55901944 + 1.66667 NA intron (NM_001024924, intron 17 of 18) L1ME3G|LINE|L1 -47148 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 663.5-2 chr4 12633046 12634034 + 1.66667 NA Intergenic L2b|LINE|L2 410089 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 737.666-2 chr11 75140152 75140929 + 1.66667 NA Intergenic Intergenic -10567 NM_001145212 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 700.666-2 chr11 128884303 128885384 + 1.66667 NA Intergenic Intergenic -6513 NM_000890 3762 Hs.444595 NM_000890 ENSG00000120457 KCNJ5 CIR|GIRK4|KATP1|KIR3.4|LQT13 potassium voltage-gated channel subfamily J member 5 protein-coding 198.667-28 chr2 205838008 205838225 + 1.66667 NA Intergenic Intergenic 155615 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 390.001 chr5 10702318 10702603 + 1.66667 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 58774 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 270-18 chr16 10828887 10829113 + 1.66667 NA Intergenic Intergenic -10206 NR_134901 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A protein-coding 333.333 chr10 16155150 16155537 + 1.66667 NA Intergenic Intergenic -281600 NM_001001484 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 357.667-13 chr8 84486714 84487156 + 1.66667 NA intron (NM_001354308, intron 2 of 9) L1MB1|LINE|L1 71451 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 345.667-5 chr21 28108191 28108763 + 1.66667 NA intron (NR_126010, intron 2 of 4) MLT1A0|LTR|ERVL-MaLR 18074 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 344.666-2 chr4 1579347 1579593 + 1.66667 NA Intergenic CpG 104521 NM_001013622 152877 Hs.143314 NM_001013622 ENSG00000174137 FAM53A DNTNP family with sequence similarity 53 member A protein-coding 163.667-8 chr11 22788318 22788421 + 1.66667 NA intron (NR_147085, intron 10 of 10) MER20|DNA|hAT-Charlie 41010 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 253.334-3 chr11 111766657 111766859 + 1.66667 NA promoter-TSS (NM_002716) promoter-TSS (NM_002716) -369 NM_002716 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 635-2 chr17 41647836 41648577 + 1.66667 NA Intergenic Intergenic -8007 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 264.834-2 chr14 63388626 63389048 + 1.66667 NA intron (NR_104104, intron 10 of 12) intron (NR_104104, intron 10 of 12) -69902 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 260-11 chr15 83838371 83838563 + 1.66667 NA intron (NM_207517, intron 7 of 29) L1M5|LINE|L1 184344 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 311.666-7 chr22 27394038 27394294 + 1.66667 NA Intergenic MIRb|SINE|MIR 83515 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 276.333-17 chr8 130751006 130751239 + 1.66667 NA Intergenic THE1D-int|LTR|ERVL-MaLR 289787 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 478.334-3 chr4 173218650 173219039 + 1.66667 NA intron (NM_017423, intron 1 of 11) L2c|LINE|L2 -49192 NR_134242 101930370 Hs.563191 NR_134241 ENSG00000245213 LOC101930370 - uncharacterized LOC101930370 ncRNA 415.667-6 chr22 45153883 45154191 + 1.66667 NA intron (NR_038956, intron 1 of 2) MLT1D|LTR|ERVL-MaLR -1453 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 335.667-18 chrX 116181670 116182016 + 1.66667 NA Intergenic L1PA5|LINE|L1 11099 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 334.667-12 chr4 31471993 31472319 + 1.66667 NA Intergenic Intergenic -34388 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 462.501 chr3 141305349 141305874 + 1.66667 NA Intergenic LTR16E2|LTR|ERVL -18575 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 219.167-11 chr3 185721996 185722167 + 1.66667 NA intron (NR_126326, intron 2 of 7) AluJr4|SINE|Alu 8829 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 248.667-22 chr3 42546449 42546720 + 1.66667 NA Intergenic L1M5|LINE|L1 -13978 NR_046654 100874007 Hs.600642 NR_046654 VIPR1-AS1 - VIPR1 antisense RNA 1 ncRNA 391.334-2 chr10 48361772 48362135 + 1.66667 NA intron (NM_001323302, intron 3 of 13) L2|LINE|L2 -39659 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 483.167-4 chr3 193220106 193220602 + 1.66667 NA Intergenic Intergenic -20868 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 318.334-11 chr8 135286387 135286594 + 1.66667 NA intron (NR_120396, intron 1 of 4) (A)n|Simple_repeat|Simple_repeat 52359 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 333.667-4 chr19 39391038 39391411 + 1.66667 NA promoter-TSS (NR_133915) promoter-TSS (NR_133915) -118 NR_046384 54623 Hs.466714 NM_019088 ENSG00000006712 PAF1 F23149_1|PD2 PAF1 homolog, Paf1/RNA polymerase II complex component protein-coding 833.834-2 chr10 106705059 106705940 + 1.66667 NA intron (NM_001206569, intron 8 of 25) intron (NM_001206569, intron 8 of 25) 459207 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 334.001-2 chr14 24351357 24351643 + 1.66667 NA Intergenic AluJr|SINE|Alu -11509 NM_006871 11035 Hs.268551 NM_006871 ENSG00000129465 RIPK3 RIP3 receptor interacting serine/threonine kinase 3 protein-coding 295.834-9 chr8 70088275 70088475 + 1.66667 NA Intergenic LTR41|LTR|ERVL -17123 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 247.667-13 chr18 22948837 22949014 + 1.66667 NA intron (NM_002894, intron 3 of 18) intron (NM_002894, intron 3 of 18) 15049 NM_203291 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 190.834-10 chr5 53478081 53478244 + 1.66667 NA Intergenic Intergenic -2467 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 277.334-4 chr20 55416177 55416352 + 1.66667 NA Intergenic Intergenic -6779 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 423.5-4 chr18 3264455 3265089 + 1.66667 NA intron (NM_001144945, intron 1 of 3) L1ME2|LINE|L1 2053 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 187.334-8 chr4 130548961 130549256 + 1.66667 NA Intergenic AluSz6|SINE|Alu 172747 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 196-45 chr9 28208807 28208984 + 1.66667 NA intron (NM_152570, intron 5 of 6) HAL1|LINE|L1 510410 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 341.001 chr6 108835663 108835982 + 1.66667 NA Intergenic L1MB5|LINE|L1 -12594 NM_001286609 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 291.334-7 chr4 87232669 87232937 + 1.66667 NA Intergenic L1ME3E|LINE|L1 -12185 NM_001292006 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 385.334-6 chr7 82552277 82552519 + 1.66667 NA Intergenic L1PA16|LINE|L1 -108442 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 250.667-22 chr2 161399060 161399510 + 1.66667 NA intron (NM_005805, intron 10 of 11) intron (NM_005805, intron 10 of 11) -17012 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 249.667-32 chr8 105990536 105990739 + 1.66667 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 69866 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 192.5-17 chr19 7680540 7680791 + 1.66667 NA promoter-TSS (NM_174894) promoter-TSS (NM_174894) -168 NM_174894 126003 Hs.432413 NM_174894 ENSG00000181029 TRAPPC5 TRS31 trafficking protein particle complex 5 protein-coding 334.834-7 chr9 127170212 127170412 + 1.66667 NA intron (NM_001190729, intron 10 of 17) MER5B|DNA|hAT-Charlie -47677 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 457.667-2 chr1 230966578 230967114 + 1.66667 NA intron (NM_024525, intron 1 of 22) MIR|SINE|MIR 12015 NM_024525 79573 Hs.424788 NM_024525 ENSG00000143643 TTC13 - tetratricopeptide repeat domain 13 protein-coding 225.5-8 chr14 63368848 63369046 + 1.66667 NA Intergenic L1MEb|LINE|L1 -50012 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 392.5-10 chr9 24100318 24100690 + 1.66667 NA Intergenic L1M3c|LINE|L1 -249903 NM_001351462 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 310.001 chr16 83876539 83876874 + 1.66667 NA Intergenic Charlie7|DNA|hAT-Charlie -22409 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 319.334-11 chr5 129100241 129100479 + 1.66667 NA intron (NM_016048, intron 1 of 4) intron (NM_016048, intron 1 of 4) 2672 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 320.333-7 chr8 37736288 37736664 + 1.66667 NA promoter-TSS (NM_001003791) promoter-TSS (NM_001003791) -158 NM_001362878 11160 Hs.669261 NM_007175 ENSG00000147475 ERLIN2 C8orf2|Erlin-2|NET32|SPFH2|SPG18 ER lipid raft associated 2 protein-coding 247-10 chr14 31448692 31448896 + 1.66667 NA intron (NM_080664, intron 2 of 2) intron (NM_080664, intron 2 of 2) 8712 NM_080664 112487 Hs.116014 NM_080664 ENSG00000129480 DTD2 ATD|C14orf126 D-aminoacyl-tRNA deacylase 2 protein-coding 537.334 chr10 92087465 92088134 + 1.66667 NA intron (NM_001178137, intron 8 of 9) intron (NM_001178137, intron 8 of 9) 155480 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 334.334-5 chr12 62261581 62261872 + 1.66667 NA intron (NR_147080, intron 1 of 19) intron (NR_147080, intron 1 of 19) 1322 NR_147079 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 368.501-3 chr9 130000846 130001287 + 1.66667 NA intron (NM_001363755, intron 1 of 15) AluSx3|SINE|Alu 42123 NM_001363755 23048 Hs.189409 NM_015033 ENSG00000187239 FNBP1 FBP17 formin binding protein 1 protein-coding 168.667-5 chr10 112767207 112767381 + 1.66667 NA intron (NM_001365713, intron 8 of 8) MIR|SINE|MIR -56202 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 287.001-3 chrX 75924922 75925110 + 1.66667 NA Intergenic Intergenic -139762 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 320.167-12 chr6 127190736 127191109 + 1.66667 NA intron (NM_032784, intron 4 of 4) intron (NM_032784, intron 4 of 4) 72251 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 421.667-2 chr14 89295957 89296329 + 1.66667 NA intron (NM_001085471, intron 3 of 6) intron (NM_001085471, intron 3 of 6) 121090 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 212.667-23 chr2 27582820 27583094 + 1.66667 NA promoter-TSS (NM_001271318) promoter-TSS (NM_001271318) -12 NM_001271288 84450 Hs.529178 NM_032434 ENSG00000243943 ZNF512 - zinc finger protein 512 protein-coding 233.667-35 chr8 75299215 75299451 + 1.66667 NA Intergenic MLT1O|LTR|ERVL-MaLR -20444 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 383.334-6 chr7 28715591 28715969 + 1.66667 NA intron (NM_001011666, intron 1 of 6) intron (NM_001011666, intron 1 of 6) 29647 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 344.667-12 chr6 147393947 147394189 + 1.66667 NA Intergenic MIRc|SINE|MIR -114622 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 367-21 chr5 93910256 93910800 + 1.66667 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -168928 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 354.001-3 chr2 179020388 179020675 + 1.66667 NA intron (NM_001316745, intron 2 of 11) intron (NM_001316745, intron 2 of 11) 29606 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 522.166 chr10 9305027 9305707 + 1.66667 NA Intergenic Intergenic -9774 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 258.666-14 chr9 2872579 2872759 + 1.66667 NA Intergenic L2|LINE|L2 -28574 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 249.666-4 chr14 75288431 75288656 + 1.66667 NA Intergenic Intergenic -5861 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 419-13 chr7 33716379 33717168 + 1.66667 NA Intergenic Intergenic -188142 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 338.333-3 chr16 23060653 23061477 + 1.66667 NA TTS (NM_020718) TTS (NM_020718) 88205 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 191-13 chr12 43079943 43080205 + 1.66667 NA Intergenic Intergenic -75241 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 267.667-12 chr2 163233000 163233212 + 1.66667 NA Intergenic L1MB5|LINE|L1 -394339 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 216.5-17 chr15 40323375 40323694 + 1.66667 NA promoter-TSS (NM_001301268) promoter-TSS (NM_001301268) -158 NM_001301268 100505573 Hs.530791 NM_001301268 ENSG00000259330 INAFM2 LINC00984|OGU1 InaF motif containing 2 protein-coding 485.333-3 chr18 42028212 42028659 + 1.66667 NA intron (NM_001308020, intron 13 of 23) intron (NM_001308020, intron 13 of 23) 73201 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 247.5-8 chr13 48461452 48461628 + 1.66667 NA intron (NM_000321, intron 20 of 26) L1MB7|LINE|L1 -16871 NM_005767 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 378.334-2 chr11 103609679 103610075 + 1.66667 NA Intergenic Intergenic -240029 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 362.667-11 chr9 15351237 15351656 + 1.66667 NA Intergenic L2c|LINE|L2 -44086 NM_001168339 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 287.334-5 chr17 57076224 57076455 + 1.66667 NA Intergenic L1ME3Cz|LINE|L1 -8907 NM_003488 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 268.167-20 chr9 69971872 69972070 + 1.66667 NA Intergenic Charlie13b|DNA|hAT-Charlie -71610 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 301-14 chr20 208308 208542 + 1.66667 NA Intergenic L1MA3|LINE|L1 -18714 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 394.334-5 chr3 30606011 30606454 + 1.66667 NA promoter-TSS (NM_003242) promoter-TSS (NM_003242) -270 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 427.501 chr6 72616567 72616865 + 1.66667 NA Intergenic Intergenic -5127 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 392.001 chr10 63726719 63726955 + 1.66667 NA Intergenic L1PA17|LINE|L1 -204947 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 396.167-4 chr11 10076872 10077310 + 1.66667 NA intron (NM_030962, intron 2 of 39) L1PA15-16|LINE|L1 217116 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 265.333-6 chr16 65244743 65245087 + 1.66667 NA Intergenic L2|LINE|L2 -68342 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 297.5 chr1 17477309 17477553 + 1.66667 NA Intergenic Intergenic -37754 NM_018715 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 206.333-13 chr15 70946628 70946957 + 1.66667 NA intron (NM_017691, intron 8 of 15) L1MA8|LINE|L1 54349 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 377.501-5 chr8 83538150 83538669 + 1.66667 NA Intergenic Intergenic 134651 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 164.667-37 chr4 46286631 46286764 + 1.66667 NA intron (NM_001114175, intron 7 of 8) L1MB5|LINE|L1 102682 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 209-13 chr13 37761580 37761724 + 1.66667 NA intron (NM_003306, intron 2 of 10) MIRc|SINE|MIR 108773 NM_001135957 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 309.667-12 chr2 68972024 68972340 + 1.66667 NA Intergenic Intergenic -2391 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 267.5-9 chr13 78332611 78332784 + 1.66667 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -263425 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 318.834-10 chr6 150420306 150420707 + 1.66667 NA Intergenic MLT1J2|LTR|ERVL-MaLR 51494 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 400.001 chr10 52010636 52010983 + 1.66667 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) 303319 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 233-8 chr14 87066383 87066664 + 1.66667 NA Intergenic Intergenic 160745 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 353.334-6 chr2 225883135 225883414 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -259520 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 280.833-2 chr10 43279824 43280093 + 1.66667 NA Intergenic L1MCa|LINE|L1 -12893 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 448.833-2 chr12 51678022 51678556 + 1.66667 NA intron (NM_001369788, intron 2 of 25) intron (NM_001369788, intron 2 of 25) 87053 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 690.334 chr1 238951644 238952413 + 1.66667 NA Intergenic MamTip2|DNA|hAT-Tip100 -434540 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 317.334-6 chr17 72472598 72473016 + 1.66667 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 119997 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 634.167-2 chr3 190322208 190323118 + 1.66667 NA promoter-TSS (NM_021101) promoter-TSS (NM_021101) -217 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 461.834-2 chr2 207745575 207746353 + 1.66667 NA intron (NM_001330218, intron 7 of 9) intron (NM_001330218, intron 7 of 9) -8843 NR_039934 100616361 NR_039934 ENSG00000284079 MIR4775 - microRNA 4775 ncRNA 249.001 chr4 157217697 157217888 + 1.66667 NA Intergenic Intergenic -2792 NM_001083619 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 376-6 chr2 75065731 75066109 + 1.66667 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) -24892 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 263.333-20 chr5 24373409 24373696 + 1.66667 NA Intergenic Intergenic 271426 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 436.168 chr7 100874691 100875159 + 1.66667 NA promoter-TSS (NM_001128852) promoter-TSS (NM_001128852) -178 NM_001128854 51593 Hs.111801 NM_015908 ENSG00000087087 SRRT ARS2|ASR2|serrate serrate, RNA effector molecule protein-coding 186.5-21 chr3 98679735 98679860 + 1.66667 NA Intergenic L1ME3A|LINE|L1 -52439 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 310.001-3 chr2 21985512 21985740 + 1.66667 NA Intergenic Intergenic -274974 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 529.667 chr17 68774503 68774910 + 1.66667 NA Intergenic LTR13|LTR|ERVK 146552 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 221.001 chr11 15103949 15104122 + 1.66667 NA Intergenic L1M5|LINE|L1 -8389 NM_001031853 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 633.667-5 chr18 63322802 63323714 + 1.66667 NA Intergenic Intergenic -3878 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 357.334-8 chr9 104780605 104780948 + 1.66667 NA TTS (NM_005502) TTS (NM_005502) 16647 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 410.834-2 chr17 58172547 58172891 + 1.66667 NA Intergenic L1M4|LINE|L1 3063 NM_001004707 124538 Hs.446879 NM_001004707 ENSG00000255713 OR4D2 BC2009|OR17-24 olfactory receptor family 4 subfamily D member 2 protein-coding 287-21 chr3 56303840 56304363 + 1.66667 NA intron (NR_132749, intron 2 of 17) L1ME3D|LINE|L1 164366 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 341.501 chr1 13996957 13997161 + 1.66667 NA Intergenic L1PA10|LINE|L1 247644 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 391.667 chr1 6784339 6784596 + 1.66667 NA promoter-TSS (NM_001242701) promoter-TSS (NM_001242701) 513 NR_149049 110841581 NR_149049 CAMTA1-DT lncCAMTA1 CAMTA1 divergent transcript ncRNA 297-7 chr15 26091527 26091820 + 1.66667 NA Intergenic LTR8|LTR|ERV1 -24140 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 410-9 chr3 103397151 103397707 + 1.66667 NA Intergenic L1MB3|LINE|L1 126687 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 467.667-2 chr16 28553860 28554203 + 1.66667 NA 5' UTR (NM_138414, exon 1 of 10) 5' UTR (NM_138414, exon 1 of 10) 111 NM_138414 112869 Hs.655476 NM_138414 ENSG00000176476 SGF29 CCDC101|STAF36|TDRD29 SAGA complex associated factor 29 protein-coding 701.501 chr10 62248683 62249300 + 1.66667 NA intron (NM_001282941, intron 2 of 4) intron (NM_001282941, intron 2 of 4) 19853 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 334.5-17 chr5 148729357 148729861 + 1.66667 NA Intergenic Intergenic -75082 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 459.834-4 chr2 60722994 60723307 + 1.66667 NA Intergenic LTR47A|LTR|ERVL -33118 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 264.167-11 chr15 64387403 64387834 + 1.66667 NA promoter-TSS (NM_016213) promoter-TSS (NM_016213) 69 NR_109934 9768 Hs.81892 NM_014736 ENSG00000166803 PCLAF KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF PCNA clamp associated factor protein-coding 238.834 chr10 41724489 41724794 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 643404 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 217-8 chr15 76771707 76771849 + 1.66667 NA exon (NM_001145923, exon 10 of 32) exon (NM_001145923, exon 10 of 32) 90166 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 267.333-11 chr19 13366480 13366798 + 1.66667 NA intron (NM_023035, intron 4 of 46) intron (NM_023035, intron 4 of 46) 139821 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 291.167-15 chr7 88421994 88422177 + 1.66667 NA Intergenic Intergenic -115191 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 257-34 chr8 42720520 42720915 + 1.66667 NA intron (NM_001347717, intron 4 of 6) intron (NM_001347717, intron 4 of 6) 23341 NM_001347717 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 274.666-3 chr17 17568693 17568916 + 1.66667 NA intron (NM_148173, intron 2 of 6) intron (NM_148173, intron 2 of 6) 8692 NM_148173 10400 Hs.714193 NM_007169 ENSG00000133027 PEMT PEAMT|PEMPT|PEMT2|PLMT|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 355.334-3 chr2 17718969 17719286 + 1.66667 NA intron (NM_024624, intron 10 of 26) MER58B|DNA|hAT-Charlie 34683 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 284-25 chr7 31491168 31491378 + 1.66667 NA Intergenic Intergenic -22798 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 371-10 chr3 141915838 141916282 + 1.66667 NA intron (NM_001679, intron 5 of 6) intron (NM_001679, intron 5 of 6) 39417 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 348.167-13 chr7 36487280 36487532 + 1.66667 NA Intergenic Intergenic -97049 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 544.167-4 chr2 219688545 219689495 + 1.66667 NA Intergenic Intergenic 61390 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 176.667-14 chr13 21558128 21558260 + 1.66667 NA intron (NM_152726, intron 2 of 11) L1M4b|LINE|L1 45976 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 261.667-12 chr14 81792023 81792444 + 1.66667 NA Intergenic Intergenic -49095 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 459.334 chr1 109979618 109979964 + 1.66667 NA Intergenic Intergenic -4974 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 233-36 chr9 100662228 100662563 + 1.66667 NA Intergenic Intergenic 84316 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 325.834-4 chr5 171030096 171030353 + 1.66667 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) 168206 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 338.334-2 chr1 202348429 202348704 + 1.66667 NA promoter-TSS (NM_001167857) promoter-TSS (NM_001167857) -133 NM_002481 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 215-4 chr1 186582445 186582626 + 1.66667 NA Intergenic Ricksha_0|DNA|MULE-MuDR 97888 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 358.667-5 chr2 99736020 99736365 + 1.66667 NA intron (NM_001025108, intron 9 of 23) L1ME3D|LINE|L1 -246175 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 292.167-23 chr8 97736443 97736719 + 1.66667 NA Intergenic MIRc|SINE|MIR -39207 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 627.501 chr6 151334763 151335431 + 1.66667 NA intron (NM_144497, intron 1 of 2) intron (NM_144497, intron 1 of 2) -6609 NM_001370346 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 304.667 chr1 221439493 221439785 + 1.66667 NA Intergenic Intergenic -103343 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 317.334-3 chr17 59135543 59135805 + 1.66667 NA intron (NM_182620, intron 1 of 3) MER63D|DNA|hAT-Blackjack 2198 NR_030411 768216 NR_030411 ENSG00000211514 MIR454 MIRN454|hsa-mir-454|mir-454 microRNA 454 ncRNA 237-3 chr1 85584281 85584480 + 1.66667 NA TTS (NM_001554) TTS (NM_001554) 3619 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 240-55 chr8 10070589 10070746 + 1.66667 NA intron (NM_001135670, intron 1 of 4) L1MD1|LINE|L1 16375 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 534.001 chr12 51051767 51052126 + 1.66667 NA intron (NR_147114, intron 2 of 5) intron (NR_147114, intron 2 of 5) 3619 NM_001351315 25875 Hs.655272 NM_015416 ENSG00000050426 LETMD1 1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3 LETM1 domain containing 1 protein-coding 347.168 chr18 29154375 29154645 + 1.66667 NA Intergenic Intergenic -977380 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 312-23 chr8 86809859 86810123 + 1.66667 NA Intergenic L1M7|LINE|L1 -56424 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 184.667-26 chr19 49255465 49255590 + 1.66667 NA Intergenic Intergenic 53341 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 297.334 chr1 45875921 45876164 + 1.66667 NA intron (NM_001324321, intron 1 of 28) L2b|LINE|L2 11694 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 306.001 chr1 113949382 113949588 + 1.66667 NA intron (NM_198268, intron 2 of 15) intron (NM_198268, intron 2 of 15) -1660 NM_198269 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 238-8 chr14 39169080 39169458 + 1.66667 NA intron (NM_001079537, intron 1 of 5) intron (NM_001079537, intron 1 of 5) 1064 NM_001079537 122553 Hs.13303 NM_177452 ENSG00000182400 TRAPPC6B NEDMEBA|TPC6 trafficking protein particle complex 6B protein-coding 341.501-3 chr15 71004944 71005295 + 1.66667 NA intron (NM_017691, intron 11 of 15) intron (NM_017691, intron 11 of 15) 112676 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 263.667-21 chr6 52404345 52404604 + 1.66667 NA 3' UTR (NM_133367, exon 2 of 2) 3' UTR (NM_133367, exon 2 of 2) -15868 NM_018100 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 378.667-9 chr3 166298538 166298911 + 1.66667 NA Intergenic Intergenic -461301 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 322.667-23 chr7 7539170 7539417 + 1.66667 NA Intergenic MSTB1|LTR|ERVL-MaLR -3420 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 185.334-3 chr2 57812118 57812276 + 1.66667 NA Intergenic L1MEg|LINE|L1 -95454 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 277.833-10 chr22 19962241 19962551 + 1.66667 NA promoter-TSS (NM_007310) promoter-TSS (NM_007310) -157 NM_007310 1312 Hs.370408 NM_000754 ENSG00000093010 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 444.667-2 chr12 14513990 14514397 + 1.66667 NA intron (NM_024829, intron 6 of 10) intron (NM_024829, intron 6 of 10) -53539 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 243.667-21 chr2 40734067 40734289 + 1.66667 NA Intergenic Intergenic -221743 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 270-10 chr12 69303180 69303361 + 1.66667 NA Intergenic L1M4b|LINE|L1 -30052 NR_031692 100302182 NR_031692 ENSG00000283476 MIR1279 MIRN1279|hsa-mir-1279 microRNA 1279 ncRNA 438.334-3 chr14 25323215 25323642 + 1.66667 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -273131 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 244.167-15 chr2 186907112 186907380 + 1.66667 NA Intergenic Intergenic -58076 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 290-13 chr4 60740791 60741122 + 1.66667 NA Intergenic L1M5|LINE|L1 -181663 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 232.667-5 chr1 237737432 237737636 + 1.66667 NA intron (NM_001035, intron 79 of 104) L3|LINE|CR1 -124641 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 305.833-4 chr12 43995803 43996111 + 1.66667 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 159876 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 165-17 chr14 27412966 27413125 + 1.66667 NA intron (NR_148991, intron 2 of 2) L2c|LINE|L2 -199543 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 391.334-3 chr10 71569924 71570422 + 1.66667 NA intron (NM_052836, intron 7 of 12) intron (NM_052836, intron 7 of 12) -58253 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 210-47 chr8 138091921 138092105 + 1.66667 NA Intergenic L1MA4|LINE|L1 -8468 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 256.167-18 chr5 90861823 90862228 + 1.66667 NA intron (NR_003149, intron 82 of 89) Charlie13b|DNA|hAT-Charlie 303228 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 301.167-5 chr12 75505840 75506164 + 1.66667 NA intron (NM_007043, intron 5 of 9) intron (NM_007043, intron 5 of 9) 5607 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 301.333-21 chr8 134791321 134791791 + 1.66667 NA Intergenic L1MEg|LINE|L1 9051 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 402.334-5 chr8 26111012 26111673 + 1.66667 NA Intergenic Intergenic -65929 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 299.666-3 chr20 38725835 38726086 + 1.66667 NA intron (NM_080552, intron 1 of 1) CpG 1474 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 299.167-11 chr15 67720969 67721340 + 1.66667 NA intron (NM_002757, intron 16 of 20) L1PA10|LINE|L1 -104355 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 330-2 chr1 161042219 161042494 + 1.66667 NA intron (NM_207005, intron 4 of 10) intron (NM_207005, intron 4 of 10) 2628 NM_001276373 7391 Hs.414880 NM_007122 ENSG00000158773 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 398.834-3 chr8 114046895 114047343 + 1.66667 NA Intergenic Intergenic -610180 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 210.667-20 chr16 75762738 75762929 + 1.66667 NA Intergenic Intergenic -36343 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 335.834-13 chr7 105408521 105408735 + 1.66667 NA Intergenic L1MA3|LINE|L1 -19238 NM_001350746 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 277.334-2 chr12 102883107 102883477 + 1.66667 NA intron (NM_000277, intron 3 of 12) intron (NM_000277, intron 3 of 12) 33952 NM_000277 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 228.834-4 chr14 65045703 65045859 + 1.66667 NA intron (NM_002028, intron 9 of 11) intron (NM_002028, intron 9 of 11) 1093 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 257.334-5 chr2 237180612 237180887 + 1.66667 NA Intergenic Charlie29a|DNA|hAT-Charlie 94860 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 594.5-3 chr12 14237973 14238757 + 1.66667 NA Intergenic Intergenic -127267 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 272.5-24 chr5 157668856 157669130 + 1.66667 NA intron (NM_001308165, intron 1 of 5) MIRc|SINE|MIR 2487 NM_001308165 11063 Hs.529462 NM_007017 ENSG00000039600 SOX30 - SRY-box transcription factor 30 protein-coding 191.333-15 chr14 71592092 71592370 + 1.66667 NA intron (NM_001354286, intron 6 of 24) intron (NM_001354286, intron 6 of 24) 5933 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 301.667-5 chr12 96496752 96496948 + 1.66667 NA intron (NM_001306084, intron 1 of 67) A-rich|Low_complexity|Low_complexity 7273 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 385.334 chr1 246004232 246004465 + 1.66667 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 413064 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 560.667 chr1 79322569 79323220 + 1.66667 NA Intergenic L2c|LINE|L2 -316164 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 468.834-3 chr14 89027038 89027491 + 1.66667 NA Intergenic CpG 202613 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 370.167-4 chr2 22040552 22041225 + 1.66667 NA Intergenic L1MB5|LINE|L1 -330236 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 381.667-2 chr11 14924614 14925101 + 1.66667 NA Intergenic Intergenic -32652 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 209.167-30 chr9 14742297 14742678 + 1.66667 NA intron (NM_001370058, intron 10 of 11) intron (NM_001370058, intron 10 of 11) -19754 NM_005454 9350 Hs.248204 NM_005454 ENSG00000147869 CER1 DAND4 cerberus 1, DAN family BMP antagonist protein-coding 265-9 chr18 76782374 76782646 + 1.66667 NA Intergenic Intergenic 39785 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 193.334-7 chr16 22027246 22027428 + 1.66667 NA intron (NM_001164579, intron 1 of 2) intron (NM_001164579, intron 1 of 2) 19226 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 MOSMO ATTHOG|BC030336|C16orf52 modulator of smoothened protein-coding 297.834-6 chr5 61000198 61000522 + 1.66667 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 55155 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 231.501 chr2 44218988 44219161 + 1.66667 NA intron (NM_177968, intron 5 of 5) intron (NM_177968, intron 5 of 5) 50199 NM_177968 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 271.334-5 chr15 38352255 38352467 + 1.66667 NA 3' UTR (NM_152594, exon 7 of 7) 3' UTR (NM_152594, exon 7 of 7) 99525 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 645.834 chr10 88491684 88492292 + 1.66667 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 91330 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 263.334 chr1 99730081 99730306 + 1.66667 NA intron (NM_001013660, intron 7 of 16) intron (NM_001013660, intron 7 of 16) -17240 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 372.667-2 chr1 242077009 242077449 + 1.66667 NA Intergenic Intergenic -78131 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 308.667-6 chr12 40603539 40603840 + 1.66667 NA Intergenic Intergenic -88750 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 399.334-5 chr21 19339350 19339658 + 1.66667 NA Intergenic Intergenic 560251 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 178.167-29 chr8 133571983 133572161 + 1.66667 NA promoter-TSS (NM_173344) promoter-TSS (NM_173344) -185 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 220-27 chr5 140822032 140822608 + 1.66667 NA exon (NM_031501, exon 1 of 1) exon (NM_031501, exon 1 of 1) 544 NM_031501 56143 Hs.199343 NM_018908 ENSG00000204965 PCDHA5 CNR6|CNRN6|CNRS6|CRNR6|PCDH-ALPHA5 protocadherin alpha 5 protein-coding 199.667-15 chr16 11257502 11257718 + 1.66667 NA Intergenic Intergenic -1428 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 326.167-11 chr7 20791603 20791917 + 1.66667 NA Intergenic Intergenic -4874 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 215.666-2 chr2 99115959 99116265 + 1.66667 NA intron (NM_001349012, intron 2 of 18) intron (NM_001349012, intron 2 of 18) 25068 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 205-20 chr3 42724720 42724968 + 1.66667 NA intron (NM_144719, intron 13 of 15) intron (NM_144719, intron 13 of 15) -7731 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 220-20 chr3 35159978 35160217 + 1.66667 NA intron (NR_110817, intron 2 of 3) L1MCa|LINE|L1 233926 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 292.667-17 chr3 113580845 113581060 + 1.66667 NA intron (NM_001322295, intron 5 of 24) intron (NM_001322295, intron 5 of 24) -13924 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 304.167-11 chr9 28001854 28002076 + 1.66667 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -428099 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 238.334-22 chr8 126099649 126099825 + 1.66667 NA Intergenic LTR57-int|LTR|ERVL -148540 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 276.167-25 chr9 110767842 110768069 + 1.66667 NA exon (NM_005592, exon 8 of 14) exon (NM_005592, exon 8 of 14) 39693 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 256-15 chr2 71227094 71227535 + 1.66667 NA promoter-TSS (NM_020459) promoter-TSS (NM_020459) -211 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 241.667-28 chr7 130010773 130011067 + 1.66667 NA Intergenic Intergenic 40465 NM_001363701 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 HSPC216|NIPA zinc finger C3HC-type containing 1 protein-coding 383.667-8 chr22 28418891 28419319 + 1.66667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -40764 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 246-6 chr12 64404058 64404343 + 1.66667 NA promoter-TSS (NM_007235) promoter-TSS (NM_007235) -192 NM_007235 11260 Hs.85951 NM_007235 ENSG00000184575 XPOT XPO3 exportin for tRNA protein-coding 210.167 chr1 20492807 20493033 + 1.66667 NA Intergenic MIRb|SINE|MIR -6710 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 281.167-12 chr2 30620916 30621164 + 1.66667 NA intron (NM_182551, intron 6 of 6) MLT1C|LTR|ERVL-MaLR 173794 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 250.667-31 chr4 6718160 6718333 + 1.66667 NA TTS (NM_018366) TTS (NM_018366) 2072 NM_018366 55330 Hs.7570 NM_018366 ENSG00000186222 BLOC1S4 BCAS4L|BLOS4|CNO biogenesis of lysosomal organelles complex 1 subunit 4 protein-coding 383.333-10 chr3 187066682 187067071 + 1.66667 NA intron (NM_173216, intron 5 of 7) intron (NM_173216, intron 5 of 7) 28158 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 260-19 chr4 64808547 64808819 + 1.66667 NA Intergenic Intergenic 195817 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 328.667-5 chr11 46369509 46369824 + 1.66667 NA intron (NM_001199268, intron 5 of 29) intron (NM_001199268, intron 5 of 29) -6736 NR_039837 100616368 NR_039837 ENSG00000264102 MIR4688 mir-4688 microRNA 4688 ncRNA 309.501-3 chr6 127179222 127179449 + 1.66667 NA intron (NM_032784, intron 4 of 4) intron (NM_032784, intron 4 of 4) 60664 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 302.334-13 chr9 23968942 23969242 + 1.66667 NA Intergenic L1M4|LINE|L1 -118491 NM_001351462 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 284.834-7 chr5 33292379 33292593 + 1.66667 NA Intergenic Intergenic 62751 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 305.334-8 chr15 80989592 80990066 + 1.66667 NA promoter-TSS (NM_015154) promoter-TSS (NM_015154) -10 NM_015154 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 355.334-4 chr2 85538710 85539081 + 1.66667 NA promoter-TSS (NR_038942) promoter-TSS (NR_038942) -9 NR_038942 100630918 Hs.66049 NR_038942 PARTICL PARTICLE promoter of MAT2A antisense radiation-induced circulating long non-coding RNA ncRNA 372.667-5 chr15 99015185 99015524 + 1.66667 NA intron (NR_126487, intron 1 of 3) CpG 650 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 273.334-10 chr8 129673942 129674145 + 1.66667 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 6196 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 283-25 chr8 27311357 27311755 + 1.66667 NA promoter-TSS (NM_001304495) promoter-TSS (NM_001304495) 78 NM_173174 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 266.501-4 chr9 104367225 104367455 + 1.66667 NA Intergenic Intergenic 97111 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 297.001-3 chr7 35016511 35016721 + 1.66667 NA intron (NM_015283, intron 3 of 21) L1MC5a|LINE|L1 20869 NM_001366673 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 346.167-2 chr10 80498503 80498971 + 1.66667 NA intron (NM_001128309, intron 2 of 5) MIRb|SINE|MIR 30474 NM_001351271 81619 Hs.308615 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14|tspan-14 tetraspanin 14 protein-coding 361-7 chr12 15585521 15585871 + 1.66667 NA intron (NM_030671, intron 11 of 13) intron (NM_030671, intron 11 of 13) 39085 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 228.667-27 chr22 38481614 38481876 + 1.66667 NA TTS (NM_016657) TTS (NM_016657) 13649 NM_006855 11015 Hs.745072 NM_006855 ENSG00000100196 KDELR3 ERD2L3 KDEL endoplasmic reticulum protein retention receptor 3 protein-coding 195-45 chr8 107372054 107372215 + 1.66667 NA intron (NM_001199859, intron 1 of 8) MER20|DNA|hAT-Charlie -35619 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 186.5-8 chr14 54489219 54489418 + 1.66667 NA promoter-TSS (NM_004124) promoter-TSS (NM_004124) -338 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 609-3 chr12 46361466 46362097 + 1.66667 NA intron (NM_001307936, intron 14 of 14) intron (NM_001307936, intron 14 of 14) 10992 NM_018976 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 222.167 chr1 68657215 68657547 + 1.66667 NA Intergenic L1MC4|LINE|L1 -160299 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 340.334-2 chr1 92596936 92597299 + 1.66667 NA intron (NM_001350198, intron 18 of 19) intron (NM_001350198, intron 18 of 19) -110192 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 236.667-34 chr8 55029798 55029954 + 1.66667 NA Intergenic Intergenic -72152 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 357.5-11 chr5 68991159 68991514 + 1.66667 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 38591 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 575.667-3 chr19 34973099 34973629 + 1.66667 NA Intergenic Intergenic -9135 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 318.167-10 chr8 57560181 57560432 + 1.66667 NA Intergenic LTR102_Mam|LTR|ERVL -185843 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 406.667-2 chr3 166245977 166246502 + 1.66667 NA Intergenic L1ME2z|LINE|L1 -408816 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 301.167-10 chr3 17474251 17474443 + 1.66667 NA intron (NM_014744, intron 3 of 21) intron (NM_014744, intron 3 of 21) 225673 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 287.001 chr17 33112850 33113145 + 1.66667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 120146 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 490.334-2 chr22 45441095 45441563 + 1.66667 NA Intergenic Intergenic 27636 NM_015653 26150 Hs.475110 NM_015653 ENSG00000128408 RIBC2 C22orf11|TRIB RIB43A domain with coiled-coils 2 protein-coding 222.834-13 chr9 114926492 114926740 + 1.66667 NA intron (NM_001252290, intron 1 of 4) L1ME4b|LINE|L1 3979 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 264.167-18 chr4 32246636 32246840 + 1.66667 NA Intergenic Intergenic -104300 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 443.334 chr10 73344842 73345220 + 1.66667 NA intron (NM_001367801, intron 6 of 27) intron (NM_001367801, intron 6 of 27) 13723 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 397.5-8 chr4 174333301 174333642 + 1.66667 NA TTS (NM_001145314) TTS (NM_001145314) -49220 NM_012180 26269 Hs.76917 NM_012180 ENSG00000164117 FBXO8 DC10|FBS|FBX8 F-box protein 8 protein-coding 381.667-5 chr17 28817715 28817979 + 1.66667 NA intron (NM_001288635, intron 1 of 3) intron (NM_001288635, intron 1 of 3) -5376 NM_001288634 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 222.667-29 chr3 68873556 68873730 + 1.66667 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 58904 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 267.667-8 chr11 105488600 105488878 + 1.66667 NA Intergenic Intergenic -121334 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 229.667-15 chr16 76826204 76826400 + 1.66667 NA Intergenic Intergenic -42634 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 458.334-2 chr19 6372508 6373078 + 1.66667 NA promoter-TSS (NM_032306) promoter-TSS (NM_032306) -1 NM_032306 84266 Hs.111099 NM_032306 ENSG00000125652 ALKBH7 ABH7|SPATA11|UNQ6002 alkB homolog 7 protein-coding 373.667-4 chr5 135560509 135561048 + 1.66667 NA Intergenic MIRb|SINE|MIR -18387 NM_001349335 153328 Hs.412418 NM_145282 ENSG00000145832 SLC25A48 - solute carrier family 25 member 48 protein-coding 310 chr1 151040998 151041285 + 1.66667 NA intron (NM_138278, intron 4 of 9) AluJb|SINE|Alu 4555 NM_001159642 149428 Hs.591473 NM_138278 ENSG00000163141 BNIPL BNIP-S|BNIP-Salpha|BNIP-Sbeta|BNIPL-1|BNIPL-2|BNIPL1|BNIPL2|BNIPS|PP753 BCL2 interacting protein like protein-coding 183.333-34 chr2 55503521 55503692 + 1.66667 NA Intergenic Intergenic -15989 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 434.834 chr5 67571186 67571638 + 1.66667 NA Intergenic L1M4|LINE|L1 75377 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 320.5 chr1 199700742 199700978 + 1.66667 NA Intergenic L1MC3|LINE|L1 -326850 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 339.334-6 chr4 114365450 114365717 + 1.66667 NA Intergenic Zaphod|DNA|hAT-Tip100 -232819 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 304.333-2 chr1 168834963 168835291 + 1.66667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 48186 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 234.167-28 chr8 37239018 37239221 + 1.66667 NA Intergenic L1ME1|LINE|L1 254794 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 235.334-5 chr3 124537836 124538077 + 1.66667 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -46702 NM_001322995 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 190.834-7 chr3 34882654 34882879 + 1.66667 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 511257 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 312.167-3 chr2 69789284 69789741 + 1.66667 NA intron (NM_001320700, intron 3 of 12) LTR19C|LTR|ERV1 -40148 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 635.668 chr18 51197853 51198727 + 1.66667 NA promoter-TSS (NM_016626) promoter-TSS (NM_016626) -609 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 200.5-37 chr5 147052234 147052763 + 1.66667 NA intron (NM_181677, intron 2 of 10) L2b|LINE|L2 3639 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 253.667-5 chr10 32205544 32205840 + 1.66667 NA Intergenic Intergenic 141466 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 278.167-14 chr18 52288996 52289173 + 1.66667 NA Intergenic Intergenic -51113 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 403.834-2 chr15 63466409 63466887 + 1.66667 NA Intergenic Intergenic -37863 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 216.667-40 chr5 43940318 43940614 + 1.66667 NA Intergenic L1MA1|LINE|L1 -337236 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 236-2 chr1 76238269 76238617 + 1.66667 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 163697 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 281.667-22 chr5 102224049 102224409 + 1.66667 NA Intergenic Intergenic 72055 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 352.001 chr12 103632815 103633054 + 1.66667 NA intron (NM_017564, intron 6 of 68) MIR3|SINE|MIR 45661 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 247.5-22 chr2 102925390 102925572 + 1.66667 NA Intergenic Intergenic -29759 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 240.667-22 chr2 51047621 51047833 + 1.66667 NA intron (NR_135237, intron 1 of 10) L1MA6|LINE|L1 15126 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 258.667-25 chr6 106354618 106354870 + 1.66667 NA Intergenic MLT1H2|LTR|ERVL-MaLR -5973 NM_001371242 206.667-10 chr12 64032699 64033167 + 1.66667 NA intron (NM_001346201, intron 4 of 21) L1MA6|LINE|L1 188233 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 373.501-3 chrX 95764846 95765124 + 1.66667 NA Intergenic Intergenic 572917 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 459.834-5 chr3 81339127 81339508 + 1.66667 NA Intergenic Intergenic 345449 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 482.667-2 chr20 31460231 31460914 + 1.66667 NA Intergenic AluSz|SINE|Alu 12441 NM_001037500 245937 Hs.381373 NM_001037500 ENSG00000180383 DEFB124 DEFB-24 defensin beta 124 protein-coding 328.334-10 chr8 121088400 121088610 + 1.66667 NA Intergenic MLT1C|LTR|ERVL-MaLR -276459 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 202.834-4 chr9 37485572 37485888 + 1.66667 NA promoter-TSS (NM_022490) promoter-TSS (NM_022490) -205 NM_001282766 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 379.501-3 chr6 153576097 153576324 + 1.66667 NA Intergenic AluYk12|SINE|Alu -434286 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 175-39 chr3 45761027 45761371 + 1.66667 NA intron (NM_022405, intron 8 of 9) intron (NM_022405, intron 8 of 9) 35337 NM_020208 54716 Hs.413095 NM_020208 ENSG00000163817 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 member 20 protein-coding 202.333-17 chr15 70330217 70330357 + 1.66667 NA Intergenic L1ME2|LINE|L1 175641 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 332-3 chr11 29334088 29334691 + 1.66667 NA Intergenic Intergenic -260024 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 338.666-3 chr4 59261427 59261756 + 1.66667 NA Intergenic Intergenic 248018 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 304.001 chr6 139054552 139054758 + 1.66667 NA Intergenic Intergenic 25910 NM_021243 58527 Hs.600861 NM_021243 ENSG00000146386 ABRACL C6orf115|Costars|HSPC280|PRO2013 ABRA C-terminal like protein-coding 224.333-9 chr12 91804525 91804797 + 1.66667 NA Intergenic L1PA11|LINE|L1 337052 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 325.834-2 chr12 12656140 12656528 + 1.66667 NA Intergenic AluSx3|SINE|Alu 39849 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 325.334 chr1 28668357 28668692 + 1.66667 NA promoter-TSS (NM_006582) promoter-TSS (NM_006582) -260 NM_001319674 10691 Hs.632373 NM_006582 ENSG00000162419 GMEB1 P96PIF|PIF96 glucocorticoid modulatory element binding protein 1 protein-coding 220-28 chr5 170320275 170320442 + 1.66667 NA Intergenic Intergenic -7642 NR_147701 100128059 Hs.587351 NR_147701 ENSG00000250274 LOC100128059 - uncharacterized LOC100128059 ncRNA 367-2 chr1 185645593 185645991 + 1.66667 NA Intergenic Intergenic -17304 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 355.333-2 chr18 61468650 61469046 + 1.66667 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 135418 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 223.333-4 chr1 162370028 162370289 + 1.66667 NA TTS (NM_001126060) TTS (NM_001126060) 6696 NM_182581 284680 Hs.97784 NM_182581 ENSG00000171722 SPATA46 C1orf111|HSD20 spermatogenesis associated 46 protein-coding 674.668 chr8 122732764 122733789 + 1.66667 NA Intergenic MIRb|SINE|MIR -39170 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 328.667-6 chr11 58788402 58788667 + 1.66667 NA Intergenic L1PA15-16|LINE|L1 56170 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 331.334-7 chr9 15211817 15212145 + 1.66667 NA intron (NM_001168341, intron 2 of 17) intron (NM_001168341, intron 2 of 17) 38237 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 464.333-4 chr2 96911518 96912059 + 1.66667 NA intron (NM_001122646, intron 12 of 16) intron (NM_001122646, intron 12 of 16) -7318 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 566.167-2 chr15 65517529 65518209 + 1.66667 NA promoter-TSS (NR_135486) promoter-TSS (NR_135486) -180 NM_197961 54878 Hs.458609 NM_017743 ENSG00000074603 DPP8 DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141 dipeptidyl peptidase 8 protein-coding 230-11 chr11 41822082 41822429 + 1.66667 NA intron (NR_120584, intron 3 of 5) intron (NR_120584, intron 3 of 5) 107687 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 521 chr11 37946048 37946588 + 1.66667 NA intron (NR_135110, intron 1 of 2) L1PB4|LINE|L1 7717 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 693.167-4 chr6 90940539 90941476 + 1.66667 NA Intergenic Intergenic -353935 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 279.333-12 chr2 72863521 72863916 + 1.66667 NA Intergenic MLT1C|LTR|ERVL-MaLR -23690 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 392.334 chr2 20141207 20141695 + 1.66667 NA Intergenic Intergenic 83679 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 351.667-17 chr8 118634107 118634350 + 1.66667 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -12265 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 303-21 chr9 137968590 137968838 + 1.66667 NA intron (NM_001243812, intron 10 of 45) L2a|LINE|L2 -21654 NR_132977 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 362-7 chr11 67391383 67391890 + 1.66667 NA promoter-TSS (NM_004584) promoter-TSS (NM_004584) -350 NM_004584 5883 Hs.655354 NM_004584 ENSG00000172613 RAD9A RAD9 RAD9 checkpoint clamp component A protein-coding 168-32 chr22 47334851 47335080 + 1.66667 NA Intergenic Intergenic -10606 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 336.334-4 chr17 60469744 60469975 + 1.66667 NA intron (NM_006380, intron 4 of 12) L1MB4|LINE|L1 47370 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 194-26 chr20 50561559 50561727 + 1.66667 NA intron (NM_002827, intron 2 of 9) intron (NM_002827, intron 2 of 9) -24143 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 257.667-6 chr15 34146448 34146654 + 1.66667 NA intron (NM_024713, intron 8 of 9) intron (NM_024713, intron 8 of 9) 44468 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 229.334-10 chr6 99344435 99344721 + 1.66667 NA intron (NM_001346530, intron 1 of 5) intron (NM_001346530, intron 1 of 5) 5096 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 234-12 chr12 28952213 28952380 + 1.66667 NA Intergenic L1M5|LINE|L1 -196982 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 435.001-5 chr4 102299861 102300420 + 1.66667 NA intron (NM_022154, intron 5 of 7) intron (NM_022154, intron 5 of 7) 24172 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 423.001 chr12 67025182 67025737 + 1.66667 NA Intergenic Intergenic 70825 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 251.334 chr1 7539618 7539947 + 1.66667 NA intron (NM_001349608, intron 5 of 21) intron (NM_001349608, intron 5 of 21) -129948 NM_001349614 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 371.667-11 chr9 17849031 17849434 + 1.66667 NA Intergenic Intergenic 270166 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 275-22 chr4 115708309 115708539 + 1.66667 NA Intergenic L2a|LINE|L2 -591301 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 237.667-38 chr7 116553091 116553313 + 1.66667 NA intron (NM_001753, intron 2 of 2) intron (NM_001753, intron 2 of 2) 26840 NM_001172896 857 Hs.74034 NM_001753 ENSG00000105974 CAV1 BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21 caveolin 1 protein-coding 166.334-4 chr19 40174416 40174580 + 1.66667 NA Intergenic AluSx3|SINE|Alu -16928 NM_002446 4294 Hs.466743 NM_002446 ENSG00000130758 MAP3K10 MEKK10|MLK2|MST mitogen-activated protein kinase kinase kinase 10 protein-coding 400.334 chr1 225777419 225777860 + 1.66667 NA promoter-TSS (NM_003133) promoter-TSS (NM_003133) -174 NM_001130440 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 306.001-7 chr6 85516132 85516344 + 1.66667 NA intron (NM_001350538, intron 23 of 28) L1ME4c|LINE|L1 66155 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 393.501-2 chr21 34348495 34348881 + 1.66667 NA Intergenic L1PREC2|LINE|L1 -15336 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 210.667-13 chr14 20237902 20238126 + 1.66667 NA Intergenic Intergenic -4778 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 326.834-6 chr2 152188167 152188549 + 1.66667 NA Intergenic Intergenic -12595 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 501.668-2 chr20 11996445 11996786 + 1.66667 NA Intergenic MIR3|SINE|MIR 78722 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 219.334-6 chr2 46009691 46009856 + 1.66667 NA intron (NM_005400, intron 9 of 14) L1ME4c|LINE|L1 -287634 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 322-2 chr1 179981100 179981475 + 1.66667 NA intron (NM_014810, intron 1 of 37) intron (NM_014810, intron 1 of 37) 26477 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 392.334-2 chr4 8241937 8242318 + 1.66667 NA Intergenic L1MB5|LINE|L1 -27627 NM_053044 94031 Hs.479119 NM_053044 ENSG00000170801 HTRA3 Prsp|Tasp HtrA serine peptidase 3 protein-coding 310.333-9 chr3 146595031 146595327 + 1.66667 NA intron (NM_001321245, intron 2 of 7) intron (NM_001321245, intron 2 of 7) 11037 NM_001321245 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 208.834-3 chr21 23687883 23688231 + 1.66667 NA Intergenic Intergenic -303222 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 265.833-8 chr14 75088490 75088975 + 1.66667 NA intron (NM_033116, intron 19 of 21) intron (NM_033116, intron 19 of 21) 19091 NM_001042430 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 353.168 chr5 112994808 112995084 + 1.66667 NA intron (NR_038352, intron 2 of 8) intron (NR_038352, intron 2 of 8) 18148 NM_152624 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 407.501-4 chr2 58521391 58521906 + 1.66667 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 895 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 310-20 chr3 37132523 37132853 + 1.66667 NA intron (NM_006309, intron 2 of 27) intron (NM_006309, intron 2 of 27) 41894 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 376.334-2 chr16 9532551 9532939 + 1.66667 NA Intergenic AluYk11|SINE|Alu -77240 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 335-12 chr7 53351610 53351977 + 1.66667 NA Intergenic Intergenic 316160 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 340-5 chr13 30674097 30674551 + 1.66667 NA Intergenic CpG -39154 NM_001204406 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 375.334 chr12 53930145 53930374 + 1.66667 NA Intergenic Intergenic -8572 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 224 chr1 18875203 18875451 + 1.66667 NA intron (NM_001161504, intron 13 of 14) intron (NM_001161504, intron 13 of 14) 7948 NR_039844 100616120 NR_039844 ENSG00000265606 MIR4695 - microRNA 4695 ncRNA 210-38 chr5 165001183 165001310 + 1.66667 NA Intergenic MER90|LTR|ERV1 530967 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 386.667-6 chr17 43081424 43081727 + 1.66667 NA intron (NM_007300, intron 12 of 23) intron (NM_007300, intron 12 of 23) 42540 NM_007298 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 445.334 chr1 20212580 20213078 + 1.66667 NA Intergenic MIR3|SINE|MIR -26343 NR_110078 101928017 Hs.550803 NR_110078 ENSG00000225986 UBXN10-AS1 - UBXN10 antisense RNA 1 ncRNA 241.334-5 chr21 30123006 30123172 + 1.66667 NA Intergenic Intergenic 43716 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 478.001 chr15 98645007 98645443 + 1.66667 NA TTS (NR_126453) TTS (NR_126453) -3314 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 493.334 chr10 82231584 82232033 + 1.66667 NA intron (NR_120666, intron 2 of 3) intron (NR_120666, intron 2 of 3) 1112 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 307.167-16 chr2 9867061 9867419 + 1.66667 NA intron (NM_001318977, intron 5 of 13) L2a|LINE|L2 23766 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 547.167-2 chr21 18204827 18205344 + 1.66667 NA intron (NM_001204178, intron 2 of 5) L1M1|LINE|L1 -39748 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 252.5-26 chr8 86828492 86828813 + 1.66667 NA Intergenic Intergenic -37763 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 173.334-2 chr11 32605675 32605795 + 1.66667 NA 3' UTR (NM_001307929, exon 8 of 8) 3' UTR (NM_001307929, exon 8 of 8) 21904 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 419-7 chr19 11134737 11135178 + 1.66667 NA Intergenic Intergenic 20825 NM_001317033 147841 Hs.381225 NM_182513 ENSG00000161888 SPC24 SPBC24 SPC24 component of NDC80 kinetochore complex protein-coding 326.667-10 chr7 3481834 3482203 + 1.66667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 180766 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 349.5-7 chr2 183339538 183339818 + 1.66667 NA Intergenic Intergenic 215235 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 356.834-3 chr5 173973294 173973702 + 1.66667 NA Intergenic Intergenic -15672 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 235.333-17 chr3 89710374 89710783 + 1.66667 NA Intergenic Intergenic 602957 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 276.667-11 chr16 55700602 55700866 + 1.66667 NA intron (NM_001172504, intron 12 of 13) intron (NM_001172504, intron 12 of 13) -24191 NR_033740 390732 Hs.554599 NR_033740 CES1P2 - carboxylesterase 1 pseudogene 2 pseudo 291.334 chr13 81992946 81993140 + 1.66667 NA Intergenic Intergenic -766060 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 241.667-12 chr16 13152313 13152583 + 1.66667 NA intron (NM_001145204, intron 2 of 4) MLT1N2|LTR|ERVL-MaLR 250850 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 298.667-2 chr1 75615949 75616196 + 1.66667 NA promoter-TSS (NM_001320283) promoter-TSS (NM_001320283) 91 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 198.333 chr1 58848778 58849073 + 1.66667 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 63774 NR_108106 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 304.334-7 chr22 37512557 37512882 + 1.66667 NA intron (NM_014550, intron 3 of 19) intron (NM_014550, intron 3 of 19) 6696 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 284-24 chr6 141730856 141731173 + 1.66667 NA Intergenic L1MC|LINE|L1 357785 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 541.834-4 chr6 118896219 118896757 + 1.66667 NA intron (NM_014034, intron 1 of 3) intron (NM_014034, intron 1 of 3) 2336 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 210.333-17 chr19 46028424 46028628 + 1.66667 NA Intergenic Intergenic -5473 NM_005091 8993 Hs.137583 NM_005091 ENSG00000008438 PGLYRP1 PGLYRP|PGRP|PGRP-S|PGRPS|TAG7|TNFSF3L peptidoglycan recognition protein 1 protein-coding 281.333-23 chr5 129626183 129626491 + 1.66667 NA intron (NM_133638, intron 10 of 22) intron (NM_133638, intron 10 of 22) -121757 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 385.833-3 chr18 5959764 5960237 + 1.66667 NA intron (NM_001365769, intron 16 of 16) intron (NM_001365769, intron 16 of 16) -64046 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 374.167-6 chr21 21617743 21618051 + 1.66667 NA Intergenic Intergenic 119422 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 254.167-20 chr3 87107979 87108423 + 1.66667 NA intron (NR_104153, intron 1 of 2) THE1B|LTR|ERVL-MaLR 18921 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 466.667-2 chr11 39978771 39979167 + 1.66667 NA Intergenic L1MB1|LINE|L1 314161 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 254.667 chr1 161378078 161378289 + 1.66667 NA Intergenic Intergenic -10300 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 492.334-2 chr19 45883093 45883593 + 1.66667 NA TTS (NM_015649) TTS (NM_015649) 2798 NM_015649 26145 Hs.515477 NM_015649 ENSG00000170604 IRF2BP1 - interferon regulatory factor 2 binding protein 1 protein-coding 345.334 chr1 179590996 179591298 + 1.66667 NA promoter-TSS (NM_173533) promoter-TSS (NM_173533) -466 NM_001199091 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 378.667-11 chr5 74236191 74236498 + 1.66667 NA Intergenic Intergenic 71981 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 384-9 chr6 163417330 163417910 + 1.66667 NA intron (NM_206853, intron 1 of 6) intron (NM_206853, intron 1 of 6) 2902 NM_006775 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 569 chr10 32854655 32855146 + 1.66667 NA intron (NM_001321115, intron 42 of 43) L1ME3G|LINE|L1 46572 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 485.834-2 chr7 123367659 123368266 + 1.66667 NA Intergenic L1PA16|LINE|L1 164986 NM_001321293 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 331.167-8 chr2 89840913 89841220 + 1.66667 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203159 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 274.334 chr1 51531462 51531652 + 1.66667 NA Intergenic L2|LINE|L2 -12291 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 285.666-5 chr14 36384570 36384947 + 1.66667 NA Intergenic Intergenic -64082 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 208.334-7 chr4 168221849 168222018 + 1.66667 NA intron (NM_017631, intron 35 of 37) intron (NM_017631, intron 35 of 37) 96819 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 384.167-6 chr2 145296594 145296937 + 1.66667 NA Intergenic Intergenic 628798 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 259.501-2 chr12 3865079 3865305 + 1.66667 NA intron (NM_001286522, intron 1 of 7) L1MEc|LINE|L1 8207 NR_104461 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 215-38 chr6 152000671 152000887 + 1.66667 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 167508 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 192.333-40 chr4 185112151 185112323 + 1.66667 NA Intergenic Intergenic -31029 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 389.5-3 chr3 20225293 20226127 + 1.66667 NA Intergenic Intergenic -39477 NM_001012413 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 341.834-2 chr12 13178271 13178570 + 1.66667 NA Intergenic Intergenic -18306 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 220.667-41 chrX 151402044 151402225 + 1.66667 NA intron (NM_001017980, intron 1 of 2) L1MA9|LINE|L1 4949 NM_001017980 203547 Hs.58633 NM_001017980 ENSG00000160131 VMA21 MEAX|XMEA vacuolar ATPase assembly factor VMA21 protein-coding 209.667-36 chr5 59172904 59173053 + 1.66667 NA intron (NM_001364602, intron 5 of 5) MIR|SINE|MIR 103137 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 259.667-12 chr21 18373041 18373234 + 1.66667 NA intron (NM_002772, intron 5 of 24) intron (NM_002772, intron 5 of 24) 30648 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 365-8 chr8 130131059 130131307 + 1.66667 NA intron (NM_001362925, intron 16 of 29) (AAAC)n|Simple_repeat|Simple_repeat -46415 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 581.334-2 chr5 32326939 32327658 + 1.66667 NA Intergenic AluSx|SINE|Alu -14359 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 218.167 chr1 37855461 37855712 + 1.66667 NA intron (NM_005955, intron 2 of 10) intron (NM_005955, intron 2 of 10) 4006 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 341.667-5 chr18 6243116 6243412 + 1.66667 NA intron (NM_001365769, intron 7 of 16) intron (NM_001365769, intron 7 of 16) -13480 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 456-2 chr13 62000402 62000996 + 1.66667 NA Intergenic Intergenic 28849 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 376.5-5 chr7 94414696 94415206 + 1.66667 NA intron (NM_000089, intron 29 of 51) intron (NM_000089, intron 29 of 51) 20390 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 194.834-3 chr10 57669686 57669846 + 1.66667 NA Intergenic Intergenic -365207 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 474.334 chr1 31591425 31591981 + 1.66667 NA Intergenic Intergenic 13558 NM_001204415 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 217-15 chr2 71508477 71508722 + 1.66667 NA intron (NM_001130985, intron 4 of 54) L1MC4|LINE|L1 41900 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 471.001-3 chr14 56389426 56389815 + 1.66667 NA Intergenic Intergenic -124711 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 182-22 chr2 118302676 118302822 + 1.66667 NA Intergenic Intergenic -116363 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 358.667-9 chr5 68579560 68579938 + 1.66667 NA Intergenic L1MC|LINE|L1 287172 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 214-53 chr9 27313722 27313935 + 1.66667 NA Intergenic Intergenic -16678 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 341.834 chr11 16632129 16632354 + 1.66667 NA intron (NM_001367872, intron 2 of 16) L1PA16|LINE|L1 106236 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 490.834-3 chr2 116696038 116696444 + 1.66667 NA Intergenic L3b|LINE|CR1 -1118450 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 279.667-8 chr17 48483682 48483979 + 1.66667 NA Intergenic Intergenic 38997 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 243.167-4 chr12 26153647 26153857 + 1.66667 NA Intergenic MamGypsy2-I|LTR|Gypsy -28715 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 287.334-2 chr14 41593488 41593857 + 1.66667 NA Intergenic L2b|LINE|L2 -13184 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 165.834-2 chr13 75674381 75674515 + 1.66667 NA intron (NM_001306080, intron 1 of 30) intron (NM_001306080, intron 1 of 30) 38118 NM_001306080 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 241.834-6 chr16 63196149 63196312 + 1.66667 NA Intergenic Intergenic -1159792 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 258.667-15 chr2 108591393 108591740 + 1.66667 NA intron (NM_001193488, intron 1 of 9) AluJr|SINE|Alu 3260 NM_004987 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 222 chr1 42227414 42227548 + 1.66667 NA intron (NM_001198850, intron 5 of 12) intron (NM_001198850, intron 5 of 12) -62736 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 246.334-7 chr7 33516021 33516189 + 1.66667 NA intron (NM_198428, intron 20 of 22) Kanga1|DNA|TcMar-Tc2 386541 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 367-9 chr15 77496973 77497390 + 1.66667 NA Intergenic Intergenic -28414 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 228.5-19 chr3 98344060 98344629 + 1.66667 NA Intergenic L1ME1|LINE|L1 -9510 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 305.5-11 chr3 137708932 137709165 + 1.66667 NA Intergenic Intergenic -55267 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 283.833-5 chr19 17282639 17283215 + 1.66667 NA exon (NM_001278444, exon 4 of 8) exon (NM_001278444, exon 4 of 8) 1026 NM_152363 126549 Hs.721610 NM_152363 ENSG00000160117 ANKLE1 ANKRD41|LEM3|LEMD6 ankyrin repeat and LEM domain containing 1 protein-coding 328-11 chr6 12213986 12214500 + 1.66667 NA Intergenic MIR3|SINE|MIR -76118 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 170-42 chr4 112500542 112500687 + 1.66667 NA Intergenic L1MB4|LINE|L1 -14765 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 309.999 chr10 79469625 79469978 + 1.66667 NA Intergenic AluJo|SINE|Alu -24177 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 366.334-5 chr18 873413 873638 + 1.66667 NA Intergenic Intergenic -31346 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 165.833-30 chr5 11693919 11694066 + 1.66667 NA intron (NM_001288717, intron 2 of 20) Tigger17a|DNA|TcMar-Tigger -104926 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 306.001-8 chr7 18570275 18570508 + 1.66667 NA intron (NM_001204147, intron 1 of 9) intron (NM_001204147, intron 1 of 9) 61121 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 256.167-21 chr7 43108504 43108795 + 1.66667 NA Intergenic MER74B|LTR|ERVL -3998 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 367.001-3 chr14 32867104 32867442 + 1.66667 NA Intergenic Intergenic -71606 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 363-6 chr4 39784203 39784550 + 1.66667 NA Intergenic Intergenic 86240 NM_001312648 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 317.667-6 chr16 68660394 68660644 + 1.66667 NA intron (NM_001793, intron 2 of 15) intron (NM_001793, intron 2 of 15) 15209 NM_001317195 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 209.667-11 chr13 25337938 25338116 + 1.66667 NA intron (NM_014089, intron 14 of 15) intron (NM_014089, intron 14 of 15) -33947 NM_016529 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 373.334-5 chr12 122226017 122226362 + 1.66667 NA promoter-TSS (NR_103497) promoter-TSS (NR_103497) -137 NM_001371333 390.5-6 chr20 43590653 43590985 + 1.66667 NA promoter-TSS (NM_001303459) promoter-TSS (NM_001303459) -118 NM_001323581 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 286.667-3 chr1 156615905 156616146 + 1.66667 NA intron (NR_135113, intron 1 of 1) intron (NR_135113, intron 1 of 1) -3390 NM_021817 60484 Hs.410719 NM_021817 ENSG00000132702 HAPLN2 BRAL1 hyaluronan and proteoglycan link protein 2 protein-coding 207.334 chr10 45641903 45642300 + 1.66667 NA intron (NR_104256, intron 5 of 6) intron (NR_104256, intron 5 of 6) 30631 NM_001282905 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 384.334 chr12 15257428 15257796 + 1.66667 NA Intergenic L2a|LINE|L2 -36195 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 508.667-2 chr18 24119158 24119779 + 1.66667 NA intron (NM_001135993, intron 8 of 13) intron (NM_001135993, intron 8 of 13) 6141 NM_001292030 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 393.5-9 chr3 1275393 1276009 + 1.66667 NA intron (NM_001289080, intron 4 of 22) MER1A|DNA|hAT-Charlie 182677 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 251.333-6 chr10 90143351 90143670 + 1.66667 NA Intergenic Intergenic -186137 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 267.667-3 chr1 114406501 114406867 + 1.66667 NA intron (NM_015906, intron 14 of 19) intron (NM_015906, intron 14 of 19) 104519 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 330.333-12 chr8 80970607 80970923 + 1.66667 NA 3' UTR (NM_018440, exon 9 of 9) 3' UTR (NM_018440, exon 9 of 9) -95984 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 266.667-10 chr18 7079131 7079367 + 1.66667 NA intron (NM_005559, intron 3 of 62) intron (NM_005559, intron 3 of 62) 38548 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 246.5-20 chr2 13559119 13559428 + 1.66667 NA Intergenic Intergenic -552260 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 274.501 chr1 72037988 72038173 + 1.66667 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -201068 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 292-13 chr2 32359778 32359963 + 1.66667 NA intron (NM_016252, intron 1 of 73) intron (NM_016252, intron 1 of 73) 2842 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 339.667-20 chr9 99548386 99548602 + 1.66667 NA Intergenic L1MA3|LINE|L1 -173237 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 256-2 chr1 151880549 151880781 + 1.66667 NA intron (NM_053055, intron 4 of 5) L1MEd|LINE|L1 -26953 NM_182578 284486 Hs.132648 NM_182578 ENSG00000196407 THEM5 ACOT15 thioesterase superfamily member 5 protein-coding 471.001-2 chr12 44000130 44000510 + 1.66667 NA intron (NM_001286212, intron 3 of 6) Charlie2a|DNA|hAT-Charlie 164239 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 186.334-2 chr10 110651326 110651595 + 1.66667 NA intron (NM_001134363, intron 1 of 13) intron (NM_001134363, intron 1 of 13) 7124 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 211.667-11 chr15 98186913 98187109 + 1.66667 NA Intergenic Intergenic -98258 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 244.167-18 chr21 30652687 30652884 + 1.66667 NA Intergenic Intergenic 9921 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 492.001-2 chr8 48218966 48219364 + 1.66667 NA Intergenic L1M5|LINE|L1 210734 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 170.5-5 chr10 7736542 7736707 + 1.66667 NA intron (NM_002216, intron 15 of 20) Charlie2b|DNA|hAT-Charlie 33308 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 423.001-4 chr4 12723981 12724286 + 1.66667 NA Intergenic Intergenic 500682 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 259-16 chr14 47538211 47538465 + 1.66667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 136616 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 354.167-3 chr12 10463047 10463307 + 1.66667 NA Intergenic L1PA14|LINE|L1 -8492 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 217.167-20 chr5 157743555 157743744 + 1.66667 NA promoter-TSS (NM_173491) promoter-TSS (NM_173491) -63 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 243.333-28 chr3 121080940 121081141 + 1.66667 NA intron (NR_145517, intron 5 of 8) L1PBa|LINE|L1 31400 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 454-12 chr6 139387636 139387984 + 1.66667 NA Intergenic Intergenic -13162 NM_006079 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 423.167-2 chr1 34763610 34764047 + 1.66667 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat 4088 NM_153212 127534 Hs.351203 NM_153212 ENSG00000189433 GJB4 CX30.3|EKV|EKVP2 gap junction protein beta 4 protein-coding 428 chr10 5384277 5384683 + 1.66667 NA Intergenic AluJb|SINE|Alu 19514 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 234.5-2 chr1 79633009 79633337 + 1.66667 NA Intergenic LTR37-int|LTR|ERV1 -626443 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 290-7 chr15 87256381 87256564 + 1.66667 NA Intergenic Intergenic -268046 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 267-4 chr10 103220659 103220947 + 1.66667 NA Intergenic AluJb|SINE|Alu -25084 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 164.333-26 chr2 8167911 8168107 + 1.66667 NA intron (NR_034135, intron 7 of 8) L1ME4a|LINE|L1 160410 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 463.666-3 chr5 44416869 44417462 + 1.66667 NA Intergenic Intergenic -27745 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 493.667 chr1 70142079 70142552 + 1.66667 NA 3' UTR (NM_001366841, exon 27 of 27) 3' UTR (NM_001366841, exon 27 of 27) 63264 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 276.5-17 chr6 83608408 83608776 + 1.66667 NA intron (NM_001242792, intron 11 of 28) intron (NM_001242792, intron 11 of 28) 96058 NM_153362 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 172.334-3 chr2 37988921 37989142 + 1.66667 NA intron (NM_001170793, intron 4 of 9) intron (NM_001170793, intron 4 of 9) 38567 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 297.667-16 chr2 75401858 75402224 + 1.66667 NA Intergenic L1MA5|LINE|L1 -122027 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 196.334-14 chr8 113159956 113160169 + 1.66667 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 217090 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 477.333-2 chr11 32674424 32674936 + 1.66667 NA intron (NM_001008391, intron 9 of 17) MLT1L|LTR|ERVL-MaLR 90849 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 234.334-5 chr2 146171354 146171547 + 1.66667 NA Intergenic Intergenic -415607 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 207-13 chr2 55051252 55051422 + 1.66667 NA promoter-TSS (NM_153828) promoter-TSS (NM_153828) -65 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 277.667-13 chr18 50281609 50281800 + 1.66667 NA promoter-TSS (NM_001204136) promoter-TSS (NM_001204136) 63 NM_001204143 4152 Hs.405610 NM_002384 ENSG00000141644 MBD1 CXXC3|PCM1|RFT methyl-CpG binding domain protein 1 protein-coding 286.001 chr12 28820752 28820999 + 1.66667 NA Intergenic Intergenic -328403 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 477-5 chr8 76583302 76583875 + 1.66667 NA Intergenic Intergenic -97659 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 204.333-26 chr20 40791600 40791867 + 1.66667 NA Intergenic L1ME1|LINE|L1 -77110 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 407.167 chr1 24642901 24643394 + 1.66667 NA promoter-TSS (NR_159380) promoter-TSS (NR_159380) -155 NR_159379 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 275.334-4 chr18 66975478 66975711 + 1.66667 NA Intergenic L1MA5|LINE|L1 -105990 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 303-4 chr10 89671512 89671793 + 1.66667 NA Intergenic LTR67B|LTR|ERVL -26080 NM_148977 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 503.334-2 chr1 109986643 109987133 + 1.66667 NA intron (NM_001242673, intron 1 of 16) intron (NM_001242673, intron 1 of 16) 2123 NM_006621 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 335-5 chr16 59527328 59527711 + 1.66667 NA Intergenic Intergenic 227672 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 206.834-3 chr10 86450608 86450844 + 1.66667 NA intron (NM_001318328, intron 15 of 18) (ACTATT)n|Simple_repeat|Simple_repeat 71058 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 345.667-7 chr4 64282794 64283067 + 1.66667 NA intron (NM_001363796, intron 9 of 11) Charlie23a|DNA|hAT-Charlie 126520 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 369.334-2 chr4 96460903 96461367 + 1.66667 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 150432 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 418.667-7 chr8 95237342 95237624 + 1.66667 NA Intergenic Intergenic -21109 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 171.667-3 chr1 157163602 157163769 + 1.66667 NA Intergenic L2c|LINE|L2 -25094 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 237.333-9 chr12 569707 569947 + 1.66667 NA intron (NM_016533, intron 1 of 3) CpG 16659 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 407.667-10 chr7 79638244 79638710 + 1.66667 NA Intergenic Intergenic 184517 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 164.334-8 chrX 47217921 47218152 + 1.66667 NA promoter-TSS (NM_033018) promoter-TSS (NM_033018) -267 NM_033018 5127 Hs.496068 NM_006201 ENSG00000102225 CDK16 PCTAIRE|PCTAIRE1|PCTGAIRE|PCTK1 cyclin dependent kinase 16 protein-coding 203.667-23 chr2 61478423 61478791 + 1.66667 NA 3' UTR (NM_003400, exon 25 of 25) 3' UTR (NM_003400, exon 25 of 25) -7520 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 226-4 chr1 175743162 175743752 + 1.66667 NA 5' UTR (NM_001328635, exon 1 of 23) 5' UTR (NM_001328635, exon 1 of 23) 138 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 445.834-2 chr4 32541741 32542337 + 1.66667 NA Intergenic Intergenic 191001 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 315-15 chr4 66830345 66830708 + 1.66667 NA Intergenic Intergenic 553702 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 310.833-14 chr9 122095163 122095456 + 1.66667 NA Intergenic Intergenic -1703 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 251.334-4 chr11 33325725 33325897 + 1.66667 NA intron (NM_001278162, intron 2 of 15) intron (NM_001278162, intron 2 of 15) -50297 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 307.333-11 chr5 121177024 121177346 + 1.66667 NA Intergenic L4_A_Mam|LINE|RTE-X -145365 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 165.334-8 chr9 101388642 101388814 + 1.66667 NA 3' UTR (NM_019051, exon 2 of 2) 3' UTR (NM_019051, exon 2 of 2) -3722 NM_001701 570 Hs.284712 NM_001701 ENSG00000136881 BAAT BACAT|BAT bile acid-CoA:amino acid N-acyltransferase protein-coding 466.167 chr19 30662220 30662692 + 1.66667 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 290072 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 280.501 chr10 13581476 13581713 + 1.66667 NA Intergenic MER63C|DNA|hAT-Blackjack -5371 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 369.5-15 chr8 81026227 81026588 + 1.66667 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 85661 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 192.5-26 chr3 11680369 11680512 + 1.66667 NA intron (NM_001284390, intron 2 of 6) intron (NM_001284390, intron 2 of 6) -36525 NM_001128219 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 211.834-6 chr14 83233825 83234030 + 1.66667 NA Intergenic Intergenic 591295 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 211.667-33 chr5 66799221 66799465 + 1.66667 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -29430 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 294.667-10 chr11 99634712 99634941 + 1.66667 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 78681 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 505-2 chr13 95380836 95381261 + 1.66667 NA Intergenic AluSz|SINE|Alu -52551 NM_001160100 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|HELIX|OSP-L|OSPL claudin 10 protein-coding 281.667-14 chr2 210329767 210329976 + 1.66667 NA intron (NR_110606, intron 1 of 4) L1PA17|LINE|L1 5159 NR_110606 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 736.334 chr17 70622350 70623225 + 1.66667 NA Intergenic MER45B|DNA|hAT-Tip100 453252 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 469.667-8 chr6 131926842 131927249 + 1.66667 NA Intergenic (ATATTA)n|Simple_repeat|Simple_repeat 24327 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 314.334-4 chr10 17216320 17216766 + 1.66667 NA intron (NR_108061, intron 1 of 2) intron (NR_108061, intron 1 of 2) 10355 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 331.167-4 chr14 47874703 47874967 + 1.66667 NA Intergenic L1MEc|LINE|L1 -79821 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 262.333-14 chr19 42108643 42108958 + 1.66667 NA intron (NM_001207026, intron 5 of 12) intron (NM_001207026, intron 5 of 12) 23646 NM_002698 5452 Hs.147381 NM_002698 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 283.334-4 chr14 92135235 92135410 + 1.66667 NA intron (NM_001322272, intron 5 of 15) intron (NM_001322272, intron 5 of 15) 13353 NM_001322272 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 285.834-2 chr15 76939622 76939812 + 1.66667 NA intron (NM_002902, intron 3 of 6) intron (NM_002902, intron 3 of 6) 7968 NM_001271837 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 340.834 chr1 58527013 58527491 + 1.66667 NA intron (NM_145243, intron 7 of 8) intron (NM_145243, intron 7 of 8) 19474 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 366.001-3 chrX 114959976 114960347 + 1.66667 NA Intergenic Intergenic 57455 NM_000640 3598 Hs.336046 NM_000640 ENSG00000123496 IL13RA2 CD213A2|CT19|IL-13R|IL13BP interleukin 13 receptor subunit alpha 2 protein-coding 208-11 chr12 55832023 55832209 + 1.66667 NA intron (NR_036479, intron 3 of 4) intron (NR_036479, intron 3 of 4) -2480 NM_032364 85406 Hs.709320 NM_032364 ENSG00000135392 DNAJC14 DNAJ|DRIP78|HDJ3|LIP6 DnaJ heat shock protein family (Hsp40) member C14 protein-coding 234.167-29 chr8 80807880 80808125 + 1.66667 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 66466 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 250-13 chr2 123115451 123115738 + 1.66667 NA Intergenic L1PA16|LINE|L1 -42113 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 189.667-13 chr12 63856895 63857063 + 1.66667 NA intron (NM_001346201, intron 1 of 21) L1ME3D|LINE|L1 12279 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 203.334-3 chr2 3343426 3343621 + 1.66667 NA intron (NM_003310, intron 2 of 8) intron (NM_003310, intron 2 of 8) 34295 NM_003310 7260 Hs.502770 NM_003310 ENSG00000032389 EIPR1 EIPR-1|TSSC1 EARP complex and GARP complex interacting protein 1 protein-coding 376.667-2 chr14 20131651 20131961 + 1.66667 NA Intergenic L1PA16|LINE|L1 -11930 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 187.334-10 chrX 71317114 71317360 + 1.66667 NA Intergenic Intergenic 15487 NM_012278 26548 Hs.109999 NM_012278 ENSG00000147166 ITGB1BP2 CHORDC3|ITGB1BP|MELUSIN|MSTP015 integrin subunit beta 1 binding protein 2 protein-coding 179.167-17 chr22 37538929 37539250 + 1.66667 NA Intergenic Intergenic -19674 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 216.667-25 chr2 34881587 34881807 + 1.66667 NA Intergenic L1MCc|LINE|L1 204140 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 315.5-2 chr11 78046659 78047187 + 1.66667 NA promoter-TSS (NM_001282406) promoter-TSS (NM_001282406) -732 NM_001282406 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 336-12 chr3 38570906 38571150 + 1.66667 NA intron (NM_198056, intron 20 of 27) L1ME4a|LINE|L1 74688 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 382.5 chr1 15272690 15273300 + 1.66667 NA intron (NM_052929, intron 3 of 30) intron (NM_052929, intron 3 of 30) 25770 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead associated phosphopeptide binding domain 1 protein-coding 427.334-2 chr10 77415566 77415914 + 1.66667 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 64868 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 363.001-2 chr4 153159321 153159612 + 1.66667 NA intron (NM_001130067, intron 1 of 11) AluJo|SINE|Alu 6388 NM_001130067 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 511 chr12 15856068 15856951 + 1.66667 NA Intergenic Intergenic -25878 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 296.001-2 chr4 65917922 65918146 + 1.66667 NA Intergenic Intergenic -247539 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 230-35 chr6 9394266 9394433 + 1.66667 NA Intergenic MER54A|LTR|ERVL 742140 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 354.167-6 chr3 78971965 78972350 + 1.66667 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 47302 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 407.666-2 chr11 65780023 65780443 + 1.66667 NA exon (NM_138368, exon 2 of 2) exon (NM_138368, exon 2 of 2) 743 NM_138368 91056 Hs.591957 NM_138368 ENSG00000254470 AP5B1 AP-5|PP1030 adaptor related protein complex 5 subunit beta 1 protein-coding 201.334-5 chr14 48255144 48255328 + 1.66667 NA Intergenic LTR7|LTR|ERV1 -460222 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 176.167-41 chr6 143592300 143592534 + 1.66667 NA Intergenic Intergenic -15763 NM_001100166 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 260-18 chr20 54113078 54113293 + 1.66667 NA Intergenic L1MC4|LINE|L1 -42420 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 281.667-29 chr9 82048842 82049158 + 1.66667 NA Intergenic HAL1ME|LINE|L1 60228 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 563.334-3 chr18 40689792 40690335 + 1.66667 NA Intergenic Intergenic 623777 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 759.5-4 chr17 56939722 56940447 + 1.66667 NA intron (NM_004645, intron 6 of 6) intron (NM_004645, intron 6 of 6) 20966 NM_004645 8161 Hs.532795 NM_004645 ENSG00000121058 COIL CLN80|p80-coilin coilin protein-coding 364.334-3 chr8 110499044 110499492 + 1.66667 NA Intergenic Intergenic -523497 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 342.834-2 chr11 75143276 75143612 + 1.66667 NA Intergenic Intergenic -7663 NM_001145212 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 452.334-5 chr3 29841170 29841507 + 1.66667 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 92818 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 270.167-8 chr14 49512234 49512535 + 1.66667 NA Intergenic Intergenic 73996 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 265.833-6 chr12 56468231 56468622 + 1.66667 NA promoter-TSS (NM_207344) promoter-TSS (NM_207344) -152 NM_207344 283377 Hs.128676 NM_207344 ENSG00000176422 SPRYD4 - SPRY domain containing 4 protein-coding 307.667-3 chr1 199067072 199067321 + 1.66667 NA intron (NR_126351, intron 2 of 2) intron (NR_126351, intron 2 of 2) -48232 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 290.334-2 chr1 69738971 69739146 + 1.66667 NA intron (NM_001366839, intron 3 of 25) intron (NM_001366839, intron 3 of 25) 169717 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 172.834-3 chr3 186627782 186627975 + 1.66667 NA Intergenic L1ME4c|LINE|L1 -12521 NM_001308077 26998 Hs.81073 NM_014375 ENSG00000090512 FETUB 16G2|Gugu|IRL685 fetuin B protein-coding 412.834-7 chr3 73503835 73504267 + 1.66667 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -17271 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 323.834-2 chr11 75866727 75867102 + 1.66667 NA intron (NM_003369, intron 3 of 14) intron (NM_003369, intron 3 of 14) 51704 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 175-15 chr14 30851279 30851423 + 1.66667 NA Intergenic Intergenic -23184 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 220-13 chr18 46636750 46636929 + 1.66667 NA intron (NM_144612, intron 4 of 39) Charlie19a|DNA|hAT-Charlie 20194 NM_144612 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 210.5-11 chr12 117610800 117610930 + 1.66667 NA intron (NM_173598, intron 5 of 19) (AGAC)n|Simple_repeat|Simple_repeat -249063 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 165-18 chr14 45552567 45552731 + 1.66667 NA Intergenic L1MA3|LINE|L1 162953 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 235.667-2 chr1 225655573 225655761 + 1.66667 NA Intergenic MER130|DNA|DNA -2544 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 370-15 chr7 2208342 2208760 + 1.66667 NA intron (NM_001013837, intron 10 of 18) L1ME1|LINE|L1 24394 NM_001013837 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 436.334-5 chr8 28987199 28987620 + 1.66667 NA intron (NM_001324384, intron 4 of 10) intron (NM_001324384, intron 4 of 10) 96095 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 297-9 chr15 78299539 78299815 + 1.66667 NA promoter-TSS (NM_025234) promoter-TSS (NM_025234) -68 NM_001303248 80349 Hs.513055 NM_025234 ENSG00000140395 WDR61 REC14|SKI8 WD repeat domain 61 protein-coding 224.667-13 chr14 20989438 20989725 + 1.66667 NA promoter-TSS (NM_001029991) promoter-TSS (NM_001029991) -399 NM_022734 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 239-29 chr4 162733571 162734072 + 1.66667 NA Intergenic Intergenic 359807 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 279.834-6 chr2 69771922 69772208 + 1.66667 NA intron (NM_001365496, intron 2 of 13) intron (NM_001365496, intron 2 of 13) 29931 NM_001320702 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 556.334 chr11 57526949 57527770 + 1.66667 NA Intergenic Intergenic 3395 NM_012456 26519 Hs.235750 NM_012456 ENSG00000134809 TIMM10 TIM10|TIM10A|TIMM10A translocase of inner mitochondrial membrane 10 protein-coding 315.834-2 chr1 247156023 247156320 + 1.66667 NA 3' UTR (NM_001297568, exon 4 of 4) 3' UTR (NM_001297568, exon 4 of 4) 15846 NM_001243740 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 335.834-3 chr17 78934145 78934448 + 1.66667 NA Intergenic Intergenic -8909 NM_003255 7077 Hs.633514 NM_003255 ENSG00000035862 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 241-13 chr2 210204541 210204827 + 1.66667 NA intron (NM_001608, intron 6 of 10) intron (NM_001608, intron 6 of 10) 20763 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 226.5-30 chr4 101522850 101523055 + 1.66667 NA Intergenic Intergenic 175175 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 326-20 chr8 135193640 135193941 + 1.66667 NA Intergenic Intergenic -40341 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 793.167-2 chr6 26571965 26572810 + 1.66667 NA non-coding (NR_134611, exon 2 of 2) non-coding (NR_134611, exon 2 of 2) 3063 NR_134611 105374988 Hs.551772 NR_134611 ENSG00000284607 LOC105374988 - uncharacterized LOC105374988 ncRNA 249-35 chr9 35996859 35997069 + 1.66667 NA Intergenic HAL1|LINE|L1 -38810 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 248.5-13 chr15 79499582 79499900 + 1.66667 NA Intergenic L2b|LINE|L2 67225 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 382.001-4 chr3 192146570 192146821 + 1.66667 NA intron (NM_004113, intron 5 of 5) (T)n|Simple_repeat|Simple_repeat -91935 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 182.334-3 chr2 35290804 35290962 + 1.66667 NA Intergenic L1PBb|LINE|L1 -180522 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 395-5 chr7 27353695 27354130 + 1.66667 NA Intergenic Intergenic -106683 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 275.334 chr10 33156926 33157177 + 1.66667 NA Intergenic Intergenic -40244 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 378.334-4 chr12 15423521 15423885 + 1.66667 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 101195 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 458.001-3 chr14 51990272 51990607 + 1.66667 NA intron (NM_016039, intron 1 of 7) intron (NM_016039, intron 1 of 7) 893 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 236.834 chr10 27206542 27206693 + 1.66667 NA intron (NM_001271512, intron 9 of 11) AluSz|SINE|Alu 33869 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 418.667 chr11 38972624 38973135 + 1.66667 NA Intergenic AluJb|SINE|Alu 324021 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 245.334-5 chr16 50930957 50931201 + 1.66667 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 52306 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 451.999-3 chr2 176435441 176435893 + 1.66667 NA Intergenic Intergenic 165385 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 182.834 chr12 12776295 12776517 + 1.66667 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) -9253 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 272.5-5 chr12 127293530 127293827 + 1.66667 NA Intergenic LTR16D2|LTR|ERVL -9395 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 226.834-7 chr2 185279428 185279687 + 1.66667 NA Intergenic Intergenic -112485 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 215.5-23 chr6 168015697 168015948 + 1.66667 NA Intergenic Intergenic -2051 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 334.167-6 chr4 109015600 109015837 + 1.66667 NA intron (NM_198721, intron 4 of 36) intron (NM_198721, intron 4 of 36) -252665 NM_001146590 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 203.667-13 chr12 65536915 65537054 + 1.66667 NA intron (NR_120431, intron 2 of 3) intron (NR_120431, intron 2 of 3) 20327 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 209.667-28 chr3 114881899 114882094 + 1.66667 NA intron (NM_001164343, intron 3 of 11) intron (NM_001164343, intron 3 of 11) 8963 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 282.667-5 chr1 196972806 196973109 + 1.66667 NA Intergenic MER58A|DNA|hAT-Charlie -4580 NM_030787 81494 Hs.282594 NM_030787 ENSG00000134389 CFHR5 CFHL5|CFHR5D|FHR-5|FHR5 complement factor H related 5 protein-coding 229.334-5 chr22 43729744 43729928 + 1.66667 NA intron (NM_198856, intron 6 of 29) HAL1b|LINE|L1 82469 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 320.334-6 chr17 39164381 39164735 + 1.66667 NA intron (NM_001143968, intron 2 of 5) intron (NM_001143968, intron 2 of 5) 1603 NM_001143968 390790 Hs.568007 NM_001143968 ENSG00000141748 ARL5C ARL12 ADP ribosylation factor like GTPase 5C protein-coding 202.667-3 chr10 51190555 51190684 + 1.66667 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -108954 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 363.334-3 chr11 33742351 33742703 + 1.66667 NA 3' UTR (NM_033406, exon 10 of 10) 3' UTR (NM_033406, exon 10 of 10) -6048 NM_203331 966 Hs.278573 NM_000611 ENSG00000085063 CD59 16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20 CD59 molecule (CD59 blood group) protein-coding 847.334-2 chr6 135002174 135002901 + 1.66667 NA intron (NM_006620, intron 5 of 17) intron (NM_006620, intron 5 of 17) -23105 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 260.334-5 chr11 110433240 110433582 + 1.66667 NA intron (NM_004109, intron 1 of 3) intron (NM_004109, intron 1 of 3) 3463 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 508.334-7 chr6 35181125 35181589 + 1.66667 NA Intergenic Intergenic -32599 NM_001303136 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 327.334-5 chr20 1972027 1972471 + 1.66667 NA intron (NR_134520, intron 3 of 3) MER113|DNA|hAT-Charlie 20557 NM_001190892 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 430-3 chr2 201863313 201863609 + 1.66667 NA intron (NM_001366386, intron 10 of 13) intron (NM_001366386, intron 10 of 13) 56882 NM_001261435 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 558.667 chr17 2244468 2245231 + 1.66667 NA intron (NM_017575, intron 8 of 18) intron (NM_017575, intron 8 of 18) -8002 NM_001256828 23293 Hs.448342 NM_017575 ENSG00000070366 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 226.5-10 chr12 38056693 38056924 + 1.66667 NA Intergenic Intergenic -259966 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 408.834-2 chr1 197582709 197583028 + 1.66667 NA intron (NM_144977, intron 15 of 15) intron (NM_144977, intron 15 of 15) 192612 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 387.667-4 chr2 55720053 55720462 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -26413 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 340.501 chr19 42244878 42245228 + 1.66667 NA Intergenic CpG -2451 NM_019884 2931 Hs.466828 NM_019884 ENSG00000105723 GSK3A - glycogen synthase kinase 3 alpha protein-coding 213-16 chr12 56346900 56347052 + 1.66667 NA intron (NM_198332, intron 19 of 23) intron (NM_198332, intron 19 of 23) 8092 NM_016584 51561 Hs.98309 NM_016584 ENSG00000110944 IL23A IL-23|IL-23A|IL23P19|P19|SGRF interleukin 23 subunit alpha protein-coding 337.167-5 chr12 12660979 12661280 + 1.66667 NA 3' UTR (NM_006143, exon 4 of 4) 3' UTR (NM_006143, exon 4 of 4) 35054 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 178.667 chr1 89780753 89780893 + 1.66667 NA Intergenic Intergenic -40209 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 274.167-6 chr12 56505466 56505721 + 1.66667 NA Intergenic Intergenic -7272 NR_132789 106635541 NR_132789 SNORA105C - small nucleolar RNA, H/ACA box 105C snoRNA 471.333-2 chr4 87963353 87963867 + 1.66667 NA Intergenic Intergenic -12040 NM_001251830 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 473 chr15 47471230 47471696 + 1.66667 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -246042 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 164.834-2 chr10 70931208 70931355 + 1.66667 NA Intergenic Intergenic -7772 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 456-7 chr2 217142581 217143095 + 1.66667 NA Intergenic L1MB8|LINE|L1 -139895 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 230.667-18 chr3 102327139 102327316 + 1.66667 NA Intergenic Intergenic -107788 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 296.834-2 chr13 79146523 79146926 + 1.66667 NA Intergenic L2a|LINE|L2 259497 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 328.334-4 chr2 188535567 188535833 + 1.66667 NA intron (NM_016315, intron 6 of 11) L1PA16|LINE|L1 238208 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 265-4 chr14 71926059 71926320 + 1.66667 NA Intergenic L1MA9|LINE|L1 -5982 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 207.667-34 chr4 185144456 185144721 + 1.66667 NA intron (NM_001151, intron 1 of 3) intron (NM_001151, intron 1 of 3) 1322 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 307.667-4 chr1 230917144 230917453 + 1.66667 NA intron (NM_024525, intron 17 of 22) MIRb|SINE|MIR 42452 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 337.834-3 chr7 131689072 131689649 + 1.66667 NA Intergenic Intergenic -132732 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 208.834-6 chr6 61937191 61937402 + 1.66667 NA intron (NR_146874, intron 4 of 13) L1MEd|LINE|L1 348929 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 245.334-10 chr4 86601221 86601396 + 1.66667 NA intron (NM_080685, intron 1 of 47) intron (NM_080685, intron 1 of 47) 6993 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 286.334-4 chr2 65831408 65831710 + 1.66667 NA Intergenic Intergenic -398960 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 251.167-5 chr12 53479708 53480036 + 1.66667 NA 3' UTR (NM_001128911, exon 15 of 15) 3' UTR (NM_001128911, exon 15 of 15) 15404 NR_109828 102157401 NR_109828 ENSG00000282977 PCBP2-OT1 TUC.338|TUC338|uc.338 PCBP2 overlapping transcript 1 ncRNA 417.667-3 chr2 75881584 75881962 + 1.66667 NA Intergenic Intergenic -170858 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 276.501 chr22 39298025 39298261 + 1.66667 NA Intergenic Intergenic 15768 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 295.334-5 chr2 47188497 47188785 + 1.66667 NA Intergenic Intergenic -11705 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 595.334 chr17 13597291 13598033 + 1.66667 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) 4267 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 167.5-40 chr7 41732104 41732399 + 1.66667 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -29161 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 302.667-4 chr17 58803109 58803391 + 1.66667 NA intron (NM_014906, intron 1 of 6) L1M3|LINE|L1 47381 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 608.667 chr17 56779992 56780687 + 1.66667 NA Intergenic CpG 53581 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 381.667-7 chr5 156694407 156694749 + 1.66667 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -155717 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 246.667-24 chr7 24677872 24678083 + 1.66667 NA intron (NM_016447, intron 10 of 12) intron (NM_016447, intron 10 of 12) 79487 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 439.167-2 chr14 66402939 66403448 + 1.66667 NA Intergenic MIRc|SINE|MIR -83178 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 246.167-35 chr8 89399644 89399940 + 1.66667 NA Intergenic Intergenic 357919 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 349-17 chr8 85472372 85472627 + 1.66667 NA intron (NM_001293675, intron 2 of 5) intron (NM_001293675, intron 2 of 5) -7584 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 245.334-4 chr14 44915961 44916190 + 1.66667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -4158 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 377.001 chr1 207051087 207051321 + 1.66667 NA promoter-TSS (NM_018566) promoter-TSS (NM_018566) -127 NM_018566 55432 Hs.567533 NM_018566 ENSG00000180667 YOD1 DUBA8|OTUD2|PRO0907 YOD1 deubiquitinase protein-coding 563.334 chr1 209884584 209885242 + 1.66667 NA Intergenic Intergenic -53261 NM_001256006 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 261-25 chr8 125465048 125465369 + 1.66667 NA Intergenic L1MB5|LINE|L1 32999 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 220.834 chr11 81335049 81335266 + 1.66667 NA Intergenic Intergenic 555679 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 350-17 chr6 139282462 139282863 + 1.66667 NA intron (NM_153235, intron 2 of 9) intron (NM_153235, intron 2 of 9) 9336 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 475.834-2 chr6 3742351 3742879 + 1.66667 NA intron (NM_183373, intron 1 of 4) intron (NM_183373, intron 1 of 4) 9397 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 245.667-6 chr13 78368942 78369135 + 1.66667 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -227084 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 549.167 chr17 10339432 10339957 + 1.66667 NA intron (NM_003802, intron 18 of 40) MER53|DNA|hAT 33312 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 191-40 chr5 42500708 42500918 + 1.66667 NA intron (NM_001242401, intron 2 of 10) Tigger15a|DNA|TcMar-Tigger -47230 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 239.333-5 chr12 99573109 99573397 + 1.66667 NA intron (NM_152788, intron 9 of 25) L1M5|LINE|L1 -74500 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 265.334 chr1 44553635 44553881 + 1.66667 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 8265 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 360.834-6 chr2 117482805 117483137 + 1.66667 NA Intergenic L1M1|LINE|L1 -331720 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 359.667 chr12 28758987 28759217 + 1.66667 NA Intergenic L1ME3A|LINE|L1 -390176 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 187.833-23 chr6 53496650 53496998 + 1.66667 NA TTS (NM_001197115) TTS (NM_001197115) 48277 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 164.167-22 chr2 11823444 11823606 + 1.66667 NA intron (NM_001349203, intron 20 of 20) intron (NM_001349203, intron 20 of 20) 13461 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 306.334-11 chr5 68825924 68826182 + 1.66667 NA Intergenic Intergenic 203874 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 656.334-2 chr7 66214210 66214828 + 1.66667 NA intron (NM_003596, intron 1 of 5) intron (NM_003596, intron 1 of 5) 9185 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 479.334-2 chr15 91076328 91076669 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -23090 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 375.667-13 chr6 153544919 153545307 + 1.66667 NA Intergenic L1MB7|LINE|L1 -413831 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 287.667-19 chr21 30258922 30259255 + 1.66667 NA Intergenic Intergenic 23862 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 281.833-6 chr15 23935755 23936114 + 1.66667 NA Intergenic L1MCa|LINE|L1 -39213 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 378.333 chr11 14460370 14460812 + 1.66667 NA intron (NM_016451, intron 19 of 21) AluJb|SINE|Alu 39267 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 349.333-3 chr14 51823511 51824107 + 1.66667 NA Intergenic L1ME1|LINE|L1 -36803 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 291-23 chr7 29416264 29416693 + 1.66667 NA intron (NM_001293072, intron 6 of 12) intron (NM_001293072, intron 6 of 12) -63234 NR_120525 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 636.667 chr18 60810728 60811400 + 1.66667 NA Intergenic Intergenic -438289 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 302.334-11 chr5 107196226 107196422 + 1.66667 NA Intergenic Intergenic -185310 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 261.333-19 chr8 62075235 62075459 + 1.66667 NA Intergenic L1MEf|LINE|L1 -173507 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 331.834 chr1 32394556 32394827 + 1.66667 NA promoter-TSS (NR_125352) promoter-TSS (NR_125352) -250 NM_001300958 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 247.667-11 chr15 62928399 62928626 + 1.66667 NA Intergenic Intergenic 104555 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 672 chr3 73085743 73086649 + 1.66667 NA Intergenic Intergenic 24537 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 240.667-3 chr1 230632260 230632431 + 1.66667 NA Intergenic L2a|LINE|L2 -10136 NM_007357 22796 Hs.211800 NM_007357 ENSG00000135775 COG2 CDG2Q|LDLC component of oligomeric golgi complex 2 protein-coding 270.833-15 chr5 76868251 76868567 + 1.66667 NA intron (NM_130772, intron 1 of 4) intron (NM_130772, intron 1 of 4) 18395 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 375.001 chr5 128174411 128174747 + 1.66667 NA non-coding (NR_046207, exon 20 of 27) non-coding (NR_046207, exon 20 of 27) 90813 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 310.667-2 chr10 99459340 99459543 + 1.66667 NA Intergenic Intergenic -28817 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 269.334-7 chr3 124878742 124879283 + 1.66667 NA intron (NM_001354766, intron 1 of 13) intron (NM_001354766, intron 1 of 13) 8353 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 730.334 chr1 56579156 56580141 + 1.66667 NA promoter-TSS (NM_003713) promoter-TSS (NM_003713) -85 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 660.834-2 chr7 140174780 140175620 + 1.66667 NA intron (NM_030647, intron 1 of 19) intron (NM_030647, intron 1 of 19) 1783 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 180.667-18 chr14 98792658 98792828 + 1.66667 NA Intergenic Intergenic 81130 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 251.667-13 chr14 68706325 68706545 + 1.66667 NA Intergenic Intergenic -77648 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 252.667-16 chr22 48918844 48919095 + 1.66667 NA Intergenic L1ME3B|LINE|L1 52199 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 255.167-23 chr20 54098167 54098466 + 1.66667 NA Intergenic MER5A|DNA|hAT-Charlie -27551 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 452.834-3 chr9 104983805 104984141 + 1.66667 NA Intergenic Intergenic -55818 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 384.001 chr2 171711746 171711980 + 1.66667 NA intron (NM_001271787, intron 4 of 15) intron (NM_001271787, intron 4 of 15) 24108 NM_001271789 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 170.667-29 chr3 9206187 9206414 + 1.66667 NA intron (NM_014850, intron 1 of 21) MIR|SINE|MIR -10595 NR_103443 100288831 Hs.694646 NR_103443 ENSG00000227929 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 356.834-5 chr8 79626731 79627170 + 1.66667 NA intron (NM_007029, intron 1 of 4) intron (NM_007029, intron 1 of 4) 15833 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 278.667-13 chr17 44232828 44233109 + 1.66667 NA Intergenic L1MD|LINE|L1 -11664 NR_045058 7343 Hs.89781 NM_014233 ENSG00000108312 UBTF CONDBA|NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor protein-coding 402-3 chr12 34255900 34256210 + 1.66667 NA Intergenic AluY|SINE|Alu 233559 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 306-7 chr18 66818413 66818743 + 1.66667 NA Intergenic Intergenic -214488 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 190-9 chr10 126015171 126015382 + 1.66667 NA 3' UTR (NM_001288973, exon 23 of 23) 3' UTR (NM_001288973, exon 23 of 23) -42003 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 359.167-5 chr4 146407432 146407728 + 1.66667 NA intron (NM_001317816, intron 4 of 10) Tigger19b|DNA|TcMar-Tigger -1003 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 447.667-3 chr10 119178573 119179093 + 1.66667 NA promoter-TSS (NR_126105) promoter-TSS (NR_126105) -21 NM_001302272 10935 Hs.523302 NM_006793 ENSG00000165672 PRDX3 AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III peroxiredoxin 3 protein-coding 226.667-37 chr8 29298371 29298530 + 1.66667 NA Intergenic SATR2|Satellite|Satellite -35380 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 468 chr1 96818043 96818539 + 1.66667 NA non-coding (NR_125357, exon 13 of 13) non-coding (NR_125357, exon 13 of 13) 95653 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 296.334-9 chr3 121667633 121667909 + 1.66667 NA intron (NM_001256486, intron 19 of 21) intron (NM_001256486, intron 19 of 21) -6868 NM_001292041 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 242.5-35 chr4 163063765 163064228 + 1.66667 NA Intergenic Intergenic 29632 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 171-53 chr7 97378675 97378788 + 1.66667 NA Intergenic L2b|LINE|L2 262138 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 411.667-8 chr22 34105239 34106048 + 1.66667 NA Intergenic L2a|LINE|L2 -182755 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 313.667-2 chr10 80130461 80130651 + 1.66667 NA Intergenic L1ME3G|LINE|L1 -1105 NR_138551 219348 Hs.204947 NM_001012973 ENSG00000189129 PLAC9 - placenta associated 9 protein-coding 268-3 chr1 62508090 62508368 + 1.66667 NA intron (NM_001367561, intron 34 of 49) intron (NM_001367561, intron 34 of 49) 71180 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 478.333-3 chr7 44240887 44241367 + 1.66667 NA intron (NM_172081, intron 11 of 18) intron (NM_172081, intron 11 of 18) 40149 NM_006555 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog protein-coding 197.334-3 chr15 70092858 70093096 + 1.66667 NA intron (NM_020908, intron 4 of 19) intron (NM_020908, intron 4 of 19) 1812 NM_001282982 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 187-8 chr10 84075808 84076005 + 1.66667 NA Intergenic Intergenic -63603 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 236.667-16 chr22 40899142 40899486 + 1.66667 NA intron (NM_022098, intron 4 of 9) intron (NM_022098, intron 4 of 9) -37201 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 331-2 chr1 70145677 70145933 + 1.66667 NA exon (NM_017768, exon 15 of 15) exon (NM_017768, exon 15 of 15) 59774 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 529.668 chr16 3844297 3844977 + 1.66667 NA intron (NM_004380, intron 2 of 30) L1ME4b|LINE|L1 35483 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 360.334-8 chr8 17699707 17700065 + 1.66667 NA intron (NM_001001931, intron 3 of 11) intron (NM_001001931, intron 3 of 11) -2149 NM_020749 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 580.167-4 chr2 84022520 84023092 + 1.66667 NA Intergenic Intergenic -267876 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 213-39 chr7 48820316 48820538 + 1.66667 NA Intergenic Intergenic -104120 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 662.333 chr9 117644470 117645098 + 1.66667 NA Intergenic Intergenic -3822 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 256-22 chr5 25277869 25278142 + 1.66667 NA intron (NR_136209, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat 87052 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 260.833-15 chr7 42928934 42929312 + 1.66667 NA intron (NM_002787, intron 1 of 7) intron (NM_002787, intron 1 of 7) 3051 NM_002787 5683 Hs.333786 NM_002787 ENSG00000106588 PSMA2 HC3|MU|PMSA2|PSC2 proteasome subunit alpha 2 protein-coding 231.667-12 chr2 86432951 86433230 + 1.66667 NA Intergenic L1M2|LINE|L1 -8281 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 223.834-3 chr11 114363155 114363331 + 1.66667 NA non-coding (NR_120567, exon 3 of 3) non-coding (NR_120567, exon 3 of 3) 16796 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 520.334 chrX 129637409 129637909 + 1.66667 NA Intergenic Intergenic 17297 NM_017413 8862 Hs.303084 NM_017413 ENSG00000171388 APLN APEL|XNPEP2 apelin protein-coding 422-7 chr16 3830969 3831233 + 1.66667 NA intron (NM_004380, intron 2 of 30) L1MD3|LINE|L1 49019 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 370.333-4 chr12 65566249 65566698 + 1.66667 NA intron (NR_120434, intron 4 of 4) intron (NR_120434, intron 4 of 4) -9162 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 396.999 chr11 18597139 18597548 + 1.66667 NA Intergenic AluJo|SINE|Alu -2446 NR_038360 100506540 Hs.585529 NM_001355570 ENSG00000247595 SPTY2D1OS SPTY2D1-AS1 SPTY2D1 opposite strand protein-coding 402.167 chr1 77514116 77514559 + 1.66667 NA intron (NM_012093, intron 10 of 13) intron (NM_012093, intron 10 of 13) 168321 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 433-9 chr4 64081337 64081736 + 1.66667 NA Intergenic Intergenic 327914 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 467-9 chrX 85638998 85639549 + 1.66667 NA Intergenic L1PB1|LINE|L1 -196507 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 252.167-7 chr15 67403630 67404009 + 1.66667 NA non-coding (NR_040051, exon 6 of 6) non-coding (NR_040051, exon 6 of 6) 117154 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 248.334-9 chr22 26924786 26924963 + 1.66667 NA Intergenic MIR|SINE|MIR 21582 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 272.334-4 chr12 8528721 8528960 + 1.66667 NA Intergenic A-rich|Low_complexity|Low_complexity 12065 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 315.167-2 chr10 82987362 82987603 + 1.66667 NA TTS (NM_001165973) TTS (NM_001165973) 689607 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 309.167-3 chr10 106534932 106535257 + 1.66667 NA Intergenic Intergenic 394929 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 226.834-8 chr20 57639206 57639428 + 1.66667 NA Intergenic Ricksha_0|DNA|MULE-MuDR -18891 NR_136660 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 765 chr19 28727543 28728327 + 1.66667 NA promoter-TSS (NR_110759) promoter-TSS (NR_110759) -241 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 273.001 chr10 104925411 104925685 + 1.66667 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -259332 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 319.667-6 chr16 1827217 1827603 + 1.66667 NA promoter-TSS (NM_001286249) promoter-TSS (NM_001286249) 186 NM_001018104 81889 Hs.513265 NM_031208 ENSG00000180185 FAHD1 C16orf36|YISKL fumarylacetoacetate hydrolase domain containing 1 protein-coding 275.834-7 chr4 180318502 180318789 + 1.66667 NA Intergenic L2c|LINE|L2 840504 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 221-32 chr6 69671150 69671300 + 1.66667 NA Intergenic Intergenic 125241 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 284.667-16 chr8 28745213 28745478 + 1.66667 NA intron (NM_001440, intron 6 of 6) intron (NM_001440, intron 6 of 6) 43844 NR_073469 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 319.334-13 chr6 113652852 113653202 + 1.66667 NA Intergenic Intergenic -2952 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 526.334-3 chr2 18966007 18966409 + 1.66667 NA Intergenic L1PA16|LINE|L1 60763 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 629.334-3 chr12 46125748 46126440 + 1.66667 NA Intergenic Intergenic -135520 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 263.834 chr1 53264509 53264870 + 1.66667 NA intron (NM_004631, intron 9 of 18) intron (NM_004631, intron 9 of 18) 26079 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 190-25 chr17 39235693 39235840 + 1.66667 NA Intergenic Intergenic -9821 NM_198993 342667 Hs.145068 NM_198993 ENSG00000141750 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 192.333-28 chr2 64750935 64751185 + 1.66667 NA Intergenic (GGAGC)n|Simple_repeat|Simple_repeat -97147 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 257.667-20 chr6 70210190 70210637 + 1.66667 NA 3' UTR (NM_001858, exon 51 of 51) 3' UTR (NM_001858, exon 51 of 51) 72784 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 215.5-21 chr6 26474522 26474890 + 1.66667 NA intron (NR_038992, intron 3 of 3) intron (NR_038992, intron 3 of 3) 7803 NR_038992 285819 Hs.575357 NR_038992 LOC285819 - uncharacterized LOC285819 ncRNA 345.5-8 chr19 43668284 43668575 + 1.66667 NA intron (NM_001005376, intron 1 of 6) intron (NM_001005376, intron 1 of 6) 1740 NM_001005377 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 230.834-2 chr17 51718924 51719116 + 1.66667 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 283593 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 447.166-2 chr8 126816447 126816993 + 1.66667 NA Intergenic L1MC5|LINE|L1 -196434 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 178.667-5 chr10 61750997 61751202 + 1.66667 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 88138 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 306.001-6 chr4 150777279 150777512 + 1.66667 NA intron (NM_001367550, intron 34 of 56) intron (NM_001367550, intron 34 of 56) 195244 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 221.5-3 chr1 234615252 234615495 + 1.66667 NA Intergenic Intergenic -5848 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 CVID14 interferon regulatory factor 2 binding protein 2 protein-coding 238-19 chr2 107400345 107400662 + 1.66667 NA Intergenic L1MEf|LINE|L1 -50978 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 325.334-3 chr12 70623661 70623924 + 1.66667 NA intron (NM_001109754, intron 2 of 33) L2c|LINE|L2 13637 NM_001330204 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 282.667-10 chr12 54442329 54442619 + 1.66667 NA intron (NR_120487, intron 3 of 3) intron (NR_120487, intron 3 of 3) 22689 NR_120488 102724050 Hs.670941 NR_120486 ENSG00000258137 LOC102724050 - uncharacterized LOC102724050 ncRNA 543.001-3 chr5 175493994 175494585 + 1.66667 NA intron (NM_001322982, intron 2 of 10) L1M6|LINE|L1 15729 NM_001322980 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 378.667-2 chr1 185441522 185441792 + 1.66667 NA Intergenic MLT2C1|LTR|ERVL -106618 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 275.001 chr1 222580503 222580708 + 1.66667 NA intron (NM_139352, intron 2 of 10) intron (NM_139352, intron 2 of 10) -9315 NR_110613 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 199.334-6 chr4 156378334 156378552 + 1.66667 NA Intergenic Intergenic -424577 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 302.333-2 chr10 85804400 85804603 + 1.66667 NA intron (NM_017551, intron 8 of 15) L1ME2|LINE|L1 226770 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 484.833-5 chr7 2718917 2719642 + 1.66667 NA intron (NM_001321766, intron 6 of 6) intron (NM_001321766, intron 6 of 6) 31077 NM_001284355 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 285.834-4 chr2 89778792 89778989 + 1.66667 NA Intergenic Intergenic -140983 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 237.667-19 chr2 45353891 45354093 + 1.66667 NA Intergenic MER4CL34|LTR|ERV1 -99051 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 181.167-27 chr6 157227847 157228066 + 1.66667 NA Intergenic Intergenic 96303 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 166.667-54 chr9 126762805 126763030 + 1.66667 NA Intergenic L1MEd|LINE|L1 -42089 NM_001135776 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 228 chr1 25002593 25002932 + 1.66667 NA Intergenic Intergenic -20741 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 222-22 chr3 175917337 175917566 + 1.66667 NA Intergenic L2b|LINE|L2 -141118 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 183-46 chr8 100490997 100491134 + 1.66667 NA Intergenic Intergenic 68694 NM_001270377 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 219.5-6 chr10 67306504 67306854 + 1.66667 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 96731 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 240.667 chr1 114577430 114577691 + 1.66667 NA intron (NM_005872, intron 2 of 6) AluSq2|SINE|Alu 4055 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 412.001-2 chr11 99080004 99080567 + 1.66667 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 59336 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 307.667-19 chr7 18552731 18553026 + 1.66667 NA intron (NM_001204147, intron 1 of 9) intron (NM_001204147, intron 1 of 9) 43608 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 291.334-8 chr4 129783055 129783320 + 1.66667 NA intron (NR_151713, intron 2 of 16) intron (NR_151713, intron 2 of 16) 11568 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 216.667-13 chr14 48364143 48364281 + 1.66667 NA Intergenic MLT1C|LTR|ERVL-MaLR -569198 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 289.167-18 chrX 22081436 22081687 + 1.66667 NA intron (NM_001282754, intron 5 of 20) intron (NM_001282754, intron 5 of 20) 49236 NM_000444 5251 Hs.495834 NM_000444 ENSG00000102174 PHEX HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH phosphate regulating endopeptidase homolog X-linked protein-coding 471.667-6 chr9 10045256 10045777 + 1.66667 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 246124 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 478-3 chr3 168047032 168047654 + 1.66667 NA intron (NM_001308155, intron 2 of 14) intron (NM_001308155, intron 2 of 14) 48581 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 348.667-2 chr10 57014593 57014848 + 1.66667 NA Intergenic MLT1A1|LTR|ERVL-MaLR 289839 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 386.501 chr9 26853852 26854552 + 1.66667 NA intron (NM_001167575, intron 5 of 5) MIR|SINE|MIR 38600 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 225.167-7 chr12 56126228 56126762 + 1.66667 NA 3' UTR (NM_001303124, exon 3 of 3) 3' UTR (NM_001303124, exon 3 of 3) -1707 NM_015292 23344 Hs.632729 NM_015292 ENSG00000139641 ESYT1 FAM62A|MBC2 extended synaptotagmin 1 protein-coding 624.833 chr1 155091158 155091828 + 1.66667 NA Intergenic Intergenic 12656 NM_004952 1944 Hs.516656 NM_004952 ENSG00000143590 EFNA3 EFL2|EPLG3|Ehk1-L|LERK3 ephrin A3 protein-coding 540.833-3 chr6 140984955 140985433 + 1.66667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 301380 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 340.834-9 chr7 22137284 22137703 + 1.66667 NA intron (NM_001367601, intron 11 of 13) intron (NM_001367601, intron 11 of 13) 56252 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 351.5-9 chr22 20456356 20456721 + 1.66667 NA intron (NR_033825, intron 4 of 5) intron (NR_033825, intron 4 of 5) -18713 NM_182895 91179 Hs.474251 NM_153334 ENSG00000244486 SCARF2 NSR1|SREC-II|SREC2|SRECRP-1|VDEGS scavenger receptor class F member 2 protein-coding 261.667-16 chr2 118661443 118661653 + 1.66667 NA Intergenic Charlie8|DNA|hAT-Charlie -58582 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 197.334-7 chr2 195430880 195431071 + 1.66667 NA Intergenic L1MC1|LINE|L1 -225983 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 265.667-23 chr8 28092151 28092335 + 1.66667 NA promoter-TSS (NM_001284220) promoter-TSS (NM_001284220) -824 NM_001284225 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 257.667-9 chr2 6594954 6595386 + 1.66667 NA Intergenic Intergenic 38617 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 488.667-3 chr6 70166289 70166988 + 1.66667 NA intron (NM_001858, intron 37 of 50) intron (NM_001858, intron 37 of 50) 116559 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 395.666 chr1 167345149 167345736 + 1.66667 NA intron (NM_001365849, intron 3 of 16) intron (NM_001365849, intron 3 of 16) 16372 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 213.667-46 chr8 129279047 129279239 + 1.66667 NA Intergenic MLT1J|LTR|ERVL-MaLR -37903 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 303.667-11 chr3 53339590 53339923 + 1.66667 NA intron (NM_001290205, intron 3 of 10) intron (NM_001290205, intron 3 of 10) -6629 NR_145715 109617024 NR_145715 ENSG00000207109 SNORD38C - small nucleolar RNA, C/D box 38C snoRNA 502.5-3 chr17 30125240 30125680 + 1.66667 NA intron (NM_032141, intron 2 of 6) intron (NM_032141, intron 2 of 6) -8300 NR_036149 100423003 NR_036149 ENSG00000284399 MIR3184 - microRNA 3184 ncRNA 259-14 chr12 124380032 124380302 + 1.66667 NA intron (NM_001077261, intron 19 of 47) intron (NM_001077261, intron 19 of 47) -42925 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 241-15 chr3 15586158 15586365 + 1.66667 NA intron (NM_001284415, intron 5 of 14) intron (NM_001284415, intron 5 of 14) -15091 NM_001281723 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 699.668 chr18 77765458 77765965 + 1.66667 NA Intergenic Intergenic 228016 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 283.333-4 chr11 74303062 74303281 + 1.66667 NA intron (NR_110031, intron 2 of 11) AluJr4|SINE|Alu -8191 NR_120556 101928580 Hs.569025 NR_120556 ENSG00000246211 P4HA3-AS1 - P4HA3 antisense RNA 1 ncRNA 250.667-23 chr2 193690518 193690724 + 1.66667 NA Intergenic UCON71_Crp|Unknown|Unknown -653648 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 235-33 chr8 71787600 71787833 + 1.66667 NA Intergenic Intergenic -55407 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 314.167-5 chr12 83800048 83800358 + 1.66667 NA Intergenic Intergenic 1112596 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 321-2 chr10 57512392 57512872 + 1.66667 NA Intergenic Intergenic -208073 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 316.167-12 chr2 235501232 235501522 + 1.66667 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -4374 NR_131900 100506749 Hs.684184 NR_131900 ENSG00000235529 AGAP1-IT1 - AGAP1 intronic transcript 1 ncRNA 209.667-37 chr5 73751550 73751710 + 1.66667 NA intron (NM_001177693, intron 3 of 35) intron (NM_001177693, intron 3 of 35) -61916 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 276.833-7 chr18 3063187 3063511 + 1.66667 NA Intergenic Intergenic -51402 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 268-17 chr16 23424522 23424866 + 1.66667 NA intron (NM_153603, intron 7 of 16) intron (NM_153603, intron 7 of 16) 28495 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 187.834 chr1 72891791 72891912 + 1.66667 NA Intergenic Intergenic -414319 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 349.001 chr1 86384194 86384510 + 1.66667 NA intron (NM_001007022, intron 4 of 17) L1MB8|LINE|L1 11709 NM_001366784 57489 Hs.149360 NM_020729 ENSG00000122417 ODF2L - outer dense fiber of sperm tails 2 like protein-coding 287.667-10 chr15 92938513 92938733 + 1.66667 NA intron (NM_001042572, intron 6 of 12) intron (NM_001042572, intron 6 of 12) 34224 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 446.168 chr2 24791143 24791605 + 1.66667 NA intron (NM_001013663, intron 1 of 1) intron (NM_001013663, intron 1 of 1) -1741 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 536.666-2 chr1 27606301 27606949 + 1.66667 NA Intergenic Intergenic -3131 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 387.833 chr10 51397491 51397953 + 1.66667 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 98149 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 230-20 chr15 89836665 89836858 + 1.66667 NA intron (NR_023361, intron 6 of 6) intron (NR_023361, intron 6 of 6) 13960 NR_049817 100847059 NR_049817 ENSG00000264966 MIR5094 - microRNA 5094 ncRNA 365.834-2 chr4 101026173 101026523 + 1.66667 NA intron (NM_001130691, intron 12 of 12) intron (NM_001130691, intron 12 of 12) 214524 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 380.334 chr12 118135621 118136016 + 1.66667 NA promoter-TSS (NM_002567) promoter-TSS (NM_002567) -306 NM_002567 5037 Hs.433863 NM_002567 ENSG00000089220 PEBP1 HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP phosphatidylethanolamine binding protein 1 protein-coding 264.501-2 chr4 69986964 69987167 + 1.66667 NA Intergenic Intergenic -8901 NM_001009181 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 332.001-5 chr5 178786397 178786749 + 1.66667 NA intron (NR_135095, intron 4 of 10) intron (NR_135095, intron 4 of 10) 31862 NR_135095 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 317.5-14 chr3 129383082 129383586 + 1.66667 NA non-coding (NR_003111, exon 4 of 4) non-coding (NR_003111, exon 4 of 4) 14014 NR_002992 677797 Hs.711399 NR_002992 ENSG00000207088 SNORA7B ACA7B small nucleolar RNA, H/ACA box 7B snoRNA 399.5-2 chr1 148371285 148371905 + 1.66667 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -9062 NR_104082 101954273 NR_104082 ENSG00000207340 RNVU1-1 RNU1-10P|RNU1-53|RNU1P10|RNVU1-10|U1.4|U1P14|vU1.1|vU1.10 RNA, variant U1 small nuclear 1 snRNA 400.001-2 chr3 192825696 192826208 + 1.66667 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 91904 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 207.333-17 chr15 66327198 66327456 + 1.66667 NA intron (NM_001323944, intron 12 of 16) intron (NM_001323944, intron 12 of 16) 20015 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 479.333-4 chr13 26946848 26947190 + 1.66667 NA Intergenic Intergenic -178514 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 340.334-5 chr14 73950204 73950514 + 1.66667 NA promoter-TSS (NM_182476) promoter-TSS (NM_182476) 57 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 280.334-2 chr10 76313324 76313672 + 1.66667 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 530737 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 287-6 chr12 39300776 39301012 + 1.66667 NA intron (NM_001173464, intron 37 of 37) L2a|LINE|L2 142226 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 324.167-20 chr8 16291838 16292065 + 1.66667 NA Intergenic Intergenic -99160 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 169.333-35 chr2 168254562 168254813 + 1.66667 NA Intergenic Intergenic -7092 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 272.667-13 chr13 41767144 41767420 + 1.66667 NA intron (NM_001009814, intron 20 of 25) intron (NM_001009814, intron 20 of 25) 193803 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 400.334-2 chr10 25556658 25557105 + 1.66667 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -94831 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 448.667 chr1 215992501 215992856 + 1.66667 NA intron (NM_206933, intron 35 of 71) intron (NM_206933, intron 35 of 71) -79787 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 244.833-7 chr2 221001063 221001333 + 1.66667 NA Intergenic Intergenic 571106 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 164.167-18 chr16 17003803 17003943 + 1.66667 NA Intergenic L1PA6|LINE|L1 -130631 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 275-9 chr14 74479203 74479482 + 1.66667 NA TTS (NR_039858) TTS (NR_039858) 862 NR_039858 100616211 NR_039858 ENSG00000283944 MIR4709 mir-4709 microRNA 4709 ncRNA 203.334-2 chr15 85507811 85508103 + 1.66667 NA intron (NM_007200, intron 2 of 36) intron (NM_007200, intron 2 of 36) -111993 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 256.334 chr12 132908564 132908812 + 1.66667 NA Intergenic CpG 20846 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 611.334-2 chr9 125407919 125408567 + 1.66667 NA Intergenic CpG 146417 NM_001354300 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 366.167-8 chr8 66173623 66174170 + 1.66667 NA intron (NM_033058, intron 10 of 10) intron (NM_033058, intron 10 of 10) 4568 NM_000756 1392 Hs.75294 NM_000756 ENSG00000147571 CRH CRF|CRH1 corticotropin releasing hormone protein-coding 199.167 chr1 114473543 114473669 + 1.66667 NA intron (NM_015906, intron 1 of 19) LTR10F|LTR|ERV1 37597 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 281.001-2 chr2 201933862 201934119 + 1.66667 NA Intergenic Intergenic -100597 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 218.5-30 chr5 172052191 172052473 + 1.66667 NA intron (NM_005990, intron 18 of 18) MLT1E2|LTR|ERVL-MaLR -45459 NM_033645 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 211.333-34 chr4 95000336 95000653 + 1.66667 NA intron (NM_001256792, intron 1 of 10) AluSc|SINE|Alu 4262 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 215-12 chr14 69242144 69242290 + 1.66667 NA non-coding (NR_034164, exon 11 of 11) non-coding (NR_034164, exon 11 of 11) -17941 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 289.833-2 chr10 69716064 69716404 + 1.66667 NA Intergenic Intergenic -85672 NM_001368895 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 206-22 chr2 199359625 199359788 + 1.66667 NA intron (NM_001172509, intron 6 of 10) intron (NM_001172509, intron 6 of 10) 98233 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 285.834-3 chr2 52110545 52110820 + 1.66667 NA intron (NR_135237, intron 7 of 10) L1MEc|LINE|L1 -259966 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 318.333-2 chr1 152929188 152929512 + 1.66667 NA Intergenic L1MB1|LINE|L1 20805 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 325-17 chr8 55577537 55577889 + 1.66667 NA Intergenic Intergenic -56735 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 465.834 chr15 76840760 76841292 + 1.66667 NA intron (NR_148227, intron 5 of 32) intron (NR_148227, intron 5 of 32) 20918 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 306.501 chr10 70947839 70948165 + 1.66667 NA intron (NR_134313, intron 1 of 2) AluJr|SINE|Alu 8949 NR_134314 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 290-8 chr2 108416744 108417009 + 1.66667 NA Intergenic MER58B|DNA|hAT-Charlie -32330 NM_181453 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 217-5 chr14 20680922 20681188 + 1.66667 NA Intergenic Intergenic -3122 NM_001145 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 199.5-26 chr2 75468151 75468339 + 1.66667 NA Intergenic L1ME3Cz|LINE|L1 -55823 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 289.167-2 chr1 8038255 8038491 + 1.66667 NA Intergenic Intergenic -12064 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 221.667-40 chr6 64629325 64629475 + 1.66667 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -672018 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 272.667-4 chr1 150549044 150549226 + 1.66667 NA promoter-TSS (NM_001288607) promoter-TSS (NM_001288607) -234 NM_001288608 54507 Hs.516243 NM_019032 ENSG00000143382 ADAMTSL4 ADAMTSL-4|ECTOL2|TSRC1 ADAMTS like 4 protein-coding 364.667-4 chr12 75765960 75766273 + 1.66667 NA Intergenic L2c|LINE|L2 -254507 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 339.667-17 chr8 37153370 37153736 + 1.66667 NA Intergenic Intergenic 340360 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 447.666-3 chr8 85445112 85445439 + 1.66667 NA intron (NM_005181, intron 5 of 6) intron (NM_005181, intron 5 of 6) 6416 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 249.334 chr11 100469210 100469379 + 1.66667 NA Intergenic Intergenic -217994 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 218.334-3 chr16 65523497 65523788 + 1.66667 NA intron (NR_027755, intron 2 of 8) (CA)n|Simple_repeat|Simple_repeat 52658 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 403.834-5 chr8 6454339 6454947 + 1.66667 NA intron (NM_024596, intron 8 of 13) intron (NM_024596, intron 8 of 13) 47490 NM_001322045 79648 Hs.593807 NM_024596 ENSG00000147316 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 328.5-8 chr8 63825145 63825602 + 1.66667 NA Intergenic Intergenic 55943 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 278.834-6 chr17 64604202 64604473 + 1.66667 NA intron (NM_022739, intron 2 of 18) intron (NM_022739, intron 2 of 18) 57970 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 301.334-4 chr2 65457529 65457808 + 1.66667 NA Intergenic Intergenic -25069 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 215.5-4 chr16 1826831 1826968 + 1.66667 NA promoter-TSS (NM_031208) promoter-TSS (NM_031208) -74 NM_005326 3029 Hs.157394 NM_005326 ENSG00000063854 HAGH GLO2|GLX2|GLXII|HAGH1 hydroxyacylglutathione hydrolase protein-coding 401.667-2 chr1 174059996 174060302 + 1.66667 NA Intergenic Ricksha|DNA|MULE-MuDR -67077 NM_001300852 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 228.334-13 chr9 5116185 5116425 + 1.66667 NA intron (NM_004972, intron 22 of 24) intron (NM_004972, intron 22 of 24) 69334 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 321.167-14 chr20 50575876 50576194 + 1.66667 NA intron (NM_002827, intron 5 of 9) intron (NM_002827, intron 5 of 9) -9751 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 385.5 chr1 31563975 31564484 + 1.66667 NA Intergenic Intergenic -12256 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 400.334-4 chr18 9719507 9719799 + 1.66667 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 11352 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 170.334-7 chr5 26187138 26187299 + 1.66667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 851368 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 334.333 chr1 12141405 12141855 + 1.66667 NA intron (NM_001243, intron 14 of 14) MER81|DNA|hAT-Blackjack -25313 NR_107000 102465836 NR_107000 ENSG00000283789 MIR7846 hsa-mir-7846 microRNA 7846 ncRNA 349-8 chr14 50188613 50188939 + 1.66667 NA intron (NM_006939, intron 4 of 22) intron (NM_006939, intron 4 of 22) 42802 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 313.333-17 chr7 36391248 36391674 + 1.66667 NA intron (NM_001284302, intron 1 of 22) intron (NM_001284302, intron 1 of 22) -1104 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 736.666 chr1 100866179 100866997 + 1.66667 NA Intergenic Intergenic 28254 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 592.667-5 chr6 46968844 46969661 + 1.66667 NA Intergenic Zaphod|DNA|hAT-Tip100 -14313 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 312-3 chr11 8562050 8562602 + 1.66667 NA intron (NM_030906, intron 1 of 13) (CT)n|Simple_repeat|Simple_repeat 31650 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 175.333-5 chr11 16981686 16981929 + 1.66667 NA intron (NM_001329630, intron 3 of 26) intron (NM_001329630, intron 3 of 26) 32607 NM_001329631 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 181.334-5 chr2 112854576 112854750 + 1.66667 NA Intergenic Intergenic -17884 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 272.834-12 chr8 67871856 67872091 + 1.66667 NA Intergenic Intergenic -80073 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 290.834-13 chr7 74656295 74656542 + 1.66667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -1247 NM_001280800 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 566.5 chr10 15719713 15720517 + 1.66667 NA promoter-TSS (NM_003638) promoter-TSS (NM_003638) -193 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 234.667-23 chr4 60768513 60768676 + 1.66667 NA Intergenic L1MA3|LINE|L1 -154025 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 219.834-9 chr14 69855602 69855889 + 1.66667 NA Intergenic Intergenic -23671 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 340.334-3 chr10 121663397 121663635 + 1.66667 NA Intergenic Intergenic -65058 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 279.167-3 chr1 92734811 92735078 + 1.66667 NA intron (NM_001350198, intron 2 of 19) L1MB7|LINE|L1 50164 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 492.501 chr1 77143486 77144134 + 1.66667 NA intron (NM_005482, intron 9 of 10) intron (NM_005482, intron 9 of 10) 75620 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 396.001 chr11 65610831 65611120 + 1.66667 NA intron (NM_002419, intron 1 of 9) intron (NM_002419, intron 1 of 9) 3246 NM_002419 4296 Hs.502872 NM_002419 ENSG00000173327 MAP3K11 MEKK11|MLK-3|MLK3|PTK1|SPRK mitogen-activated protein kinase kinase kinase 11 protein-coding 327.333-3 chr10 19783748 19784182 + 1.66667 NA Intergenic Intergenic -32467 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 173.167-42 chr9 3118669 3118869 + 1.66667 NA Intergenic L1MB1|LINE|L1 -62820 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 593.333 chr16 57735048 57735736 + 1.66667 NA promoter-TSS (NM_005886) promoter-TSS (NM_005886) -378 NM_005886 10300 Hs.275675 NM_005886 ENSG00000140854 KATNB1 KAT|LIS6 katanin regulatory subunit B1 protein-coding 282.333-16 chr7 44509116 44509498 + 1.66667 NA Intergenic L1M5|LINE|L1 -18649 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 208.334-5 chr17 61929690 61929849 + 1.66667 NA Intergenic MIRb|SINE|MIR -1787 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 170.5-16 chr16 57378088 57378207 + 1.66667 NA intron (NM_001304392, intron 1 of 1) intron (NM_001304392, intron 1 of 1) 5657 NM_002996 6376 Hs.531668 NM_002996 ENSG00000006210 CX3CL1 ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin C-X3-C motif chemokine ligand 1 protein-coding 274-7 chr11 73570637 73571077 + 1.66667 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 27255 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 360.667-4 chr2 202178559 202179175 + 1.66667 NA intron (NM_001277372, intron 15 of 23) intron (NM_001277372, intron 15 of 23) 59730 NM_001005781 7341 Hs.81424 NM_003352 ENSG00000116030 SUMO1 DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1 small ubiquitin like modifier 1 protein-coding 274.334-9 chr9 81526685 81526905 + 1.66667 NA Intergenic L2|LINE|L2 162740 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 392.667-5 chr18 3603264 3603893 + 1.66667 NA promoter-TSS (NR_119377) promoter-TSS (NR_119377) -159 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 365.667-6 chr2 57469031 57469457 + 1.66667 NA Intergenic Intergenic -438407 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 299.334-4 chr5 100309074 100309357 + 1.66667 NA Intergenic Intergenic 79039 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 295.334-9 chr6 38967097 38967468 + 1.66667 NA intron (NM_001371, intron 81 of 91) L1MB7|LINE|L1 -14175 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 267.834-2 chr15 42598555 42598843 + 1.66667 NA intron (NM_020759, intron 3 of 32) L1MA4|LINE|L1 23093 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 373-3 chr11 121861231 121861620 + 1.66667 NA Intergenic L1M5|LINE|L1 238419 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 317.167-11 chr8 115222086 115222309 + 1.66667 NA Intergenic MER50|LTR|ERV1 445816 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 347.334-6 chr4 116454941 116455259 + 1.66667 NA Intergenic Intergenic 155375 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 389.334-6 chr4 74084017 74084315 + 1.66667 NA Intergenic PRIMA41-int|LTR|ERV1 15029 NM_002089 2920 Hs.75765 NM_002089 ENSG00000081041 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 C-X-C motif chemokine ligand 2 protein-coding 299.501-2 chr19 38023390 38023666 + 1.66667 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 116320 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 334-7 chr2 55246181 55246512 + 1.66667 NA exon (NM_001321002, exon 10 of 16) exon (NM_001321002, exon 10 of 16) 12182 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 613.501 chr1 92784679 92785715 + 1.66667 NA promoter-TSS (NM_001350197) promoter-TSS (NM_001350197) -89 NM_001350198 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 331.834-5 chr8 69580524 69580818 + 1.66667 NA intron (NR_156414, intron 5 of 20) intron (NR_156414, intron 5 of 20) -12229 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 181 chr1 41230778 41230900 + 1.66667 NA intron (NM_001172218, intron 1 of 15) MER5B|DNA|hAT-Charlie 11467 NM_001172219 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 509.999 chr3 14925329 14925856 + 1.66667 NA intron (NM_001320276, intron 17 of 18) intron (NM_001320276, intron 17 of 18) 21913 NR_046254 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 293.667-25 chr8 77988827 77989120 + 1.66667 NA Intergenic Intergenic -527367 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 302.667-9 chr5 86072302 86072605 + 1.66667 NA Intergenic Intergenic -209991 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 236.333-3 chr10 72834357 72834634 + 1.66667 NA intron (NM_138357, intron 2 of 7) intron (NM_138357, intron 2 of 7) -59244 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 299.667-8 chr3 150083267 150083510 + 1.66667 NA Intergenic Intergenic -13055 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 291.667-11 chr4 110834859 110835085 + 1.66667 NA Intergenic Intergenic 25675 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 508.001 chr1 84084726 84085192 + 1.66667 NA intron (NM_002731, intron 1 of 9) intron (NM_002731, intron 1 of 9) 6880 NM_207578 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 385.667-4 chr14 61569568 61570214 + 1.66667 NA promoter-TSS (NR_039985) promoter-TSS (NR_039985) 303 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 757.834 chr21 44297480 44298224 + 1.66667 NA 3' UTR (NM_000383, exon 14 of 14) 3' UTR (NM_000383, exon 14 of 14) -2201 NM_002626 5211 Hs.255093 NM_002626 ENSG00000141959 PFKL ATP-PFK|PFK-B|PFK-L phosphofructokinase, liver type protein-coding 234-20 chr2 61161400 61161674 + 1.66667 NA promoter-TSS (NM_001143959) promoter-TSS (NM_001143959) -651 NM_001143959 339804 Hs.140617 NM_001143959 ENSG00000237651 C2orf74 - chromosome 2 open reading frame 74 protein-coding 464.168 chr4 92971307 92971710 + 1.66667 NA intron (NM_001286838, intron 2 of 14) L1MA5|LINE|L1 667109 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 299.001-2 chr2 57362143 57362341 + 1.66667 NA Intergenic L1MEf|LINE|L1 -545409 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 276.667-25 chr9 3877922 3878103 + 1.66667 NA intron (NM_001042413, intron 8 of 10) L2b|LINE|L2 -20634 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 206.667-18 chr16 48917395 48917561 + 1.66667 NA Intergenic Intergenic -307298 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 433.167 chr1 238959196 238959776 + 1.66667 NA Intergenic Intergenic -427082 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 271-28 chr6 111452063 111452308 + 1.66667 NA intron (NM_002912, intron 2 of 32) L1ME1|LINE|L1 -31287 NR_034110 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA 520.167 chr10 30002576 30003020 + 1.66667 NA Intergenic Intergenic 56788 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 328.5-10 chr8 144945596 144945935 + 1.66667 NA intron (NM_006958, intron 2 of 2) intron (NM_006958, intron 2 of 2) 5115 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 214-14 chr14 46649091 46649373 + 1.66667 NA Intergenic Intergenic 2549 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 416.501-2 chr3 138942054 138942376 + 1.66667 NA intron (NR_121649, intron 2 of 2) intron (NR_121649, intron 2 of 2) 1805 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 712.5-2 chr11 10304013 10304868 + 1.66667 NA promoter-TSS (NM_001124) promoter-TSS (NM_001124) -633 NM_001124 133 Hs.441047 NM_001124 ENSG00000148926 ADM AM|PAMP adrenomedullin protein-coding 330.667-15 chr7 106175474 106175715 + 1.66667 NA Intergenic L1ME3G|LINE|L1 -63018 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 316.167-10 chr2 192198674 192199034 + 1.66667 NA Intergenic Intergenic -3921 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 376.667-5 chr2 52344689 52345071 + 1.66667 NA intron (NR_135237, intron 8 of 10) MER5A|DNA|hAT-Charlie -25768 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 560.666-2 chr4 155441853 155442502 + 1.66667 NA Intergenic Intergenic -65212 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 277.667-19 chr22 26175501 26175776 + 1.66667 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 6164 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 311.167-14 chr8 108887742 108888396 + 1.66667 NA Intergenic L2|LINE|L2 -100475 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 249.666-7 chr17 72801667 72801943 + 1.66667 NA intron (NM_001352692, intron 6 of 9) L1MB7|LINE|L1 -161333 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 174.834-6 chr19 31071488 31071763 + 1.66667 NA Intergenic Intergenic -95885 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 253.667-19 chr16 49349248 49349424 + 1.66667 NA Intergenic Intergenic -24468 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 893.5 chr19 14136618 14137909 + 1.66667 NA promoter-TSS (NM_018154) intron (NR_045214, intron 1 of 2) 111 NR_045214 100507373 Hs.720437 NR_045214 ENSG00000267169 LOC100507373 - uncharacterized LOC100507373 ncRNA 356.667-2 chr11 120519462 120519856 + 1.66667 NA intron (NM_014619, intron 1 of 20) MIR|SINE|MIR 7913 NM_014619 2900 Hs.538738 NM_014619 ENSG00000149403 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate ionotropic receptor kainate type subunit 4 protein-coding 384.168-2 chr4 152388524 152388812 + 1.66667 NA intron (NM_033632, intron 2 of 11) intron (NM_033632, intron 2 of 11) -6139 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 393.001-2 chr4 42148758 42149124 + 1.66667 NA intron (NM_207406, intron 2 of 5) intron (NM_207406, intron 2 of 5) 3714 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 180-47 chr4 61151670 61151917 + 1.66667 NA intron (NR_147148, intron 3 of 3) intron (NR_147148, intron 3 of 3) 8137 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 501.834-2 chr19 27859505 27860087 + 1.66667 NA intron (NR_146734, intron 1 of 7) HSAT4|Satellite|centr -65856 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 313.334-4 chr20 52191527 52191745 + 1.66667 NA exon (NM_022088, exon 1 of 5) exon (NM_022088, exon 1 of 5) 143 NM_199426 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 374.667-8 chr2 157853015 157853446 + 1.66667 NA intron (NM_001347664, intron 1 of 11) MLT1A|LTR|ERVL-MaLR -14600 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 511-3 chrX 109475296 109475830 + 1.66667 NA exon (NM_001522, exon 2 of 20) exon (NM_001522, exon 2 of 20) 6523 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 442.334-2 chr14 31862135 31862406 + 1.66667 NA Intergenic L1M5|LINE|L1 -82583 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 293.834-3 chr2 137051231 137051578 + 1.66667 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 285859 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 291.667-17 chr8 120654096 120654542 + 1.66667 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -106934 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 212.5 chr1 70489210 70489782 + 1.66667 NA Intergenic AluSz|SINE|Alu 78228 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 389-9 chr2 147858459 147858928 + 1.66667 NA intron (NM_001278579, intron 2 of 11) MER58B|DNA|hAT-Charlie 13664 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 426.667-4 chr4 80056516 80056890 + 1.66667 NA intron (NM_001286781, intron 3 of 16) intron (NM_001286781, intron 3 of 16) 16526 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 198.667-30 chr3 20133833 20134003 + 1.66667 NA intron (NM_003884, intron 11 of 17) L1ME3G|LINE|L1 -3647 NR_036086 100422901 NR_036086 ENSG00000266745 MIR3135A MIR3135|hsa-mir-3135a microRNA 3135a ncRNA 423.333-6 chr13 112711280 112711791 + 1.66667 NA intron (NM_032189, intron 1 of 28) intron (NM_032189, intron 1 of 28) 21206 NM_015205 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 260.333-21 chr8 94630229 94630549 + 1.66667 NA Intergenic Intergenic 9078 NR_034034 100288748 Hs.608210 NR_034034 ENSG00000261437 LOC100288748 - uncharacterized LOC100288748 ncRNA 219-28 chr5 27931608 27931780 + 1.66667 NA Intergenic Intergenic 355971 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 191.666-5 chr15 61621219 61621529 + 1.66667 NA Intergenic Intergenic -108544 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 454.833-4 chr22 49304785 49305422 + 1.66667 NA Intergenic Intergenic 238363 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 428.334 chr1 153967328 153967819 + 1.66667 NA promoter-TSS (NM_001255979) promoter-TSS (NM_001255979) 152 NM_014437 27173 Hs.7854 NM_014437 ENSG00000143570 SLC39A1 ZIP1|ZIRTL solute carrier family 39 member 1 protein-coding 307.834-8 chr17 79875507 79875718 + 1.66667 NA Intergenic L1MD2|LINE|L1 -36172 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 460.667-11 chr5 51380600 51381262 + 1.66667 NA intron (NR_046243, intron 1 of 1) intron (NR_046243, intron 1 of 1) 2401 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 238.334-2 chr1 66925477 66925632 + 1.66667 NA promoter-TSS (NM_207014) promoter-TSS (NM_207014) 564 NM_001077703 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 168-40 chr5 21432815 21432930 + 1.66667 NA Intergenic Intergenic -26608 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 180.667-45 chr8 72019600 72019792 + 1.66667 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 55888 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 181.667-42 chr7 6105860 6106065 + 1.66667 NA intron (NM_032172, intron 1 of 17) intron (NM_032172, intron 1 of 17) 1013 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 268.333-8 chr15 98121230 98121544 + 1.66667 NA Intergenic Intergenic -32634 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 267.334-6 chr9 14416189 14416364 + 1.66667 NA intron (NM_001369458, intron 1 of 11) Tigger3b|DNA|TcMar-Tigger -17293 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 669.667-4 chr6 166774929 166776026 + 1.66667 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 87048 NM_001006932 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 342.001-2 chr2 202573791 202574055 + 1.66667 NA Intergenic Intergenic -61046 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 297.333-7 chr14 20333468 20333841 + 1.66667 NA promoter-TSS (NM_021178) promoter-TSS (NM_021178) -342 NM_182849 57820 Hs.107003 NM_021178 ENSG00000100814 CCNB1IP1 C14orf18|HEI10 cyclin B1 interacting protein 1 protein-coding 185.5-4 chr1 187294541 187294662 + 1.66667 NA intron (NR_126347, intron 1 of 3) AluJo|SINE|Alu -149027 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 332.333-15 chr9 124210701 124211044 + 1.66667 NA Intergenic Intergenic -46734 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 172.5-48 chr6 34757100 34757309 + 1.66667 NA promoter-TSS (NM_003093) promoter-TSS (NM_003093) 110 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 380.334-3 chr18 9925898 9926214 + 1.66667 NA intron (NM_194434, intron 1 of 5) MIR|SINE|MIR 12040 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 202.5-7 chr10 32212035 32212243 + 1.66667 NA Intergenic AluJr|SINE|Alu 135019 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 464.667-7 chr6 120799580 120799915 + 1.66667 NA Intergenic Intergenic 534733 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 259.834-5 chr4 54867735 54867987 + 1.66667 NA Intergenic L1MEf|LINE|L1 209933 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 195.834-8 chr6 128730434 128730555 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -152644 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 379.501 chr16 84478239 84478583 + 1.66667 NA 3' UTR (NM_020947, exon 8 of 8) 3' UTR (NM_020947, exon 8 of 8) -11050 NR_146503 105371374 Hs.610979 NR_146503 ENSG00000261286 ATP2C2-AS1 - ATP2C2 antisense RNA 1 ncRNA 416.667-13 chr9 78036430 78037158 + 1.66667 NA Intergenic Intergenic -4983 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 231.667-14 chr20 49078414 49078598 + 1.66667 NA intron (NM_001362762, intron 13 of 24) intron (NM_001362762, intron 13 of 24) 32194 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 393.334-3 chr3 101684828 101685202 + 1.66667 NA intron (NM_000986, intron 3 of 5) L1MB4|LINE|L1 1703 NM_000986 6152 Hs.477028 NM_000986 ENSG00000114391 RPL24 HEL-S-310|L24 ribosomal protein L24 protein-coding 170.334-5 chr3 140922614 140922860 + 1.66667 NA Intergenic Intergenic -19099 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 228.667-9 chr12 32714485 32714643 + 1.66667 NA intron (NM_001330380, intron 7 of 18) AluY|SINE|Alu 35263 NM_012062 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 210.833-18 chr2 221633651 221633845 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -59546 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 295.501-2 chr2 71101705 71101939 + 1.66667 NA Intergenic L1MCa|LINE|L1 28407 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 270.667-4 chr14 56236555 56236744 + 1.66667 NA intron (NM_021255, intron 2 of 5) L1MEd|LINE|L1 118238 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 301-25 chr7 73851797 73852043 + 1.66667 NA Intergenic L1MA8|LINE|L1 -9239 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 333.667-13 chr9 21455308 21455641 + 1.66667 NA non-coding (NR_027054, exon 4 of 4) non-coding (NR_027054, exon 4 of 4) 15035 NM_024013 3439 Hs.37026 NM_024013 ENSG00000197919 IFNA1 IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@ interferon alpha 1 protein-coding 471.667-2 chr3 78532797 78533244 + 1.66667 NA Intergenic Intergenic -484057 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 248.666-2 chr1 205516022 205516243 + 1.66667 NA intron (NM_002596, intron 1 of 15) intron (NM_002596, intron 1 of 15) 11463 NM_212502 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 216.667-55 chrX 71182052 71182228 + 1.66667 NA Intergenic CpG -33072 NM_001097642 2705 Hs.333303 NM_000166 ENSG00000169562 GJB1 CMTX|CMTX1|CX32 gap junction protein beta 1 protein-coding 265.667-11 chr15 72024135 72024419 + 1.66667 NA intron (NM_006901, intron 4 of 41) L1M4|LINE|L1 -89981 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 395.001-2 chr18 46324798 46325213 + 1.66667 NA Intergenic Intergenic -9013 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 216.834-6 chr19 43316450 43316648 + 1.66667 NA Intergenic HERVIP10F-int|LTR|ERV1 -32507 NR_026881 23574 Hs.721578 NR_026881 PRG1 - p53-responsive gene 1 ncRNA 556.333-4 chr7 32479525 32480178 + 1.66667 NA Intergenic Intergenic 10529 NR_024466 23658 Hs.424908 NM_012322 ENSG00000106355 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 535.667-2 chr14 61087755 61088478 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -106426 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 250.667-39 chr7 79390432 79390627 + 1.66667 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -62428 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 332.501-2 chr5 100829321 100829539 + 1.66667 NA intron (NM_005668, intron 4 of 4) Tigger16a|DNA|TcMar-Tigger -12865 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 564.501 chr16 69397917 69398458 + 1.66667 NA Intergenic Intergenic -12180 NM_005652 7014 Hs.63335 NM_005652 ENSG00000132604 TERF2 TRBF2|TRF2 telomeric repeat binding factor 2 protein-coding 357.5-9 chr5 12161379 12161723 + 1.66667 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -257105 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 569.834-4 chr2 201158129 201158878 + 1.66667 NA promoter-TSS (NR_040030) promoter-TSS (NR_040030) -711 NR_040030 65072 Hs.664613 NR_040030 ENSG00000226312 CFLAR-AS1 ALS2CR10 CFLAR antisense RNA 1 ncRNA 179.667-28 chr3 45885132 45885388 + 1.66667 NA intron (NM_001276379, intron 2 of 9) intron (NM_001276379, intron 2 of 9) -1244 NM_001256369 10803 Hs.225946 NM_006641 ENSG00000173585 CCR9 CC-CKR-9|CDw199|GPR-9-6|GPR28 C-C motif chemokine receptor 9 protein-coding 330 chr1 90536961 90537248 + 1.66667 NA Intergenic Intergenic -120646 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 392-10 chr6 132212042 132212441 + 1.66667 NA Intergenic L1M5|LINE|L1 78263 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 416.834 chr12 2284418 2285216 + 1.66667 NA intron (NR_046769, intron 1 of 2) intron (NR_046769, intron 1 of 2) 15041 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 222.666-9 chr7 102959992 102960343 + 1.66667 NA intron (NR_105043, intron 9 of 20) L1PA2|LINE|L1 -13263 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 243.334-10 chr5 108451196 108451981 + 1.66667 NA Intergenic Intergenic -69490 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 315.001-3 chr14 45838552 45838765 + 1.66667 NA Intergenic Intergenic -123056 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 230.833-9 chr17 49375103 49375446 + 1.66667 NA intron (NR_110883, intron 3 of 4) AluSx|SINE|Alu -12801 NM_014897 22834 Hs.463375 NM_014897 ENSG00000198740 ZNF652 - zinc finger protein 652 protein-coding 205.333-15 chr15 61051398 61051648 + 1.66667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 177779 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 600.167-6 chr7 95865640 95866468 + 1.66667 NA intron (NM_004411, intron 5 of 16) intron (NM_004411, intron 5 of 16) 93548 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 680.667-2 chr9 72871512 72872359 + 1.66667 NA non-coding (NR_121120, exon 4 of 4) non-coding (NR_121120, exon 4 of 4) 2174 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 260-16 chr2 180251450 180251707 + 1.66667 NA Intergenic Intergenic -244281 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 304-18 chr2 212548651 212548910 + 1.66667 NA Intergenic Intergenic -9978 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 271.999-2 chr14 82192674 82192879 + 1.66667 NA Intergenic L1ME3Cz|LINE|L1 -449638 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 199.5-2 chr1 84676288 84676441 + 1.66667 NA intron (NM_001166293, intron 1 of 13) intron (NM_001166293, intron 1 of 13) 14097 NM_001166417 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 368.667-11 chr6 75021706 75021935 + 1.66667 NA Intergenic Intergenic 106962 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 465.001 chr10 17144463 17144805 + 1.66667 NA 3' UTR (NM_001321007, exon 12 of 12) 3' UTR (NM_001321007, exon 12 of 12) -14817 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 208.334-9 chr5 115586160 115586308 + 1.66667 NA intron (NM_001164469, intron 3 of 3) L2|LINE|L2 -15921 NR_109875 101927100 Hs.745340 NR_109874 LOC101927100 - uncharacterized LOC101927100 ncRNA 345.834-2 chr18 3613833 3614062 + 1.66667 NA intron (NM_001242761, intron 7 of 11) AluSq|SINE|Alu 10210 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 338 chr1 77100977 77101202 + 1.66667 NA intron (NM_005482, intron 10 of 10) intron (NM_005482, intron 10 of 10) 40946 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 372-10 chr3 197365571 197365981 + 1.66667 NA Intergenic Intergenic -66455 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 356-19 chr7 362400 362847 + 1.66667 NA Intergenic L1M5|LINE|L1 -16802 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 221.833-13 chr2 59364477 59364780 + 1.66667 NA Intergenic Intergenic 146920 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 198.334-3 chr2 206729940 206730074 + 1.66667 NA Intergenic (TGTT)n|Simple_repeat|Simple_repeat -11611 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 285-18 chr6 65331977 65332251 + 1.66667 NA 3' UTR (NM_001142801, exon 12 of 12) 3' UTR (NM_001142801, exon 12 of 12) 30696 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 238.334-21 chr8 126058456 126058667 + 1.66667 NA Intergenic L1M5|LINE|L1 -107364 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 437.667-5 chr7 14833010 14833459 + 1.66667 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 8216 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 348.167-6 chr3 28321812 28322163 + 1.66667 NA non-coding (NR_138585, exon 4 of 4) non-coding (NR_138585, exon 4 of 4) -26734 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 285-7 chr14 77453530 77453853 + 1.66667 NA intron (NM_001193315, intron 2 of 19) MIR3|SINE|MIR 3910 NM_022067 63894 Hs.16157 NM_022067 ENSG00000151445 VIPAS39 C14orf133|SPE-39|SPE39|VIPAR|VPS16B|hSPE-39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein-coding 483.501 chr2 129160803 129161306 + 1.66667 NA Intergenic Intergenic 112837 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 250.667-48 chrX 48801880 48802036 + 1.66667 NA promoter-TSS (NM_006044) promoter-TSS (NM_006044) 9 NM_001321229 10013 Hs.6764 NM_006044 ENSG00000094631 HDAC6 CPBHM|HD6|JM21|PPP1R90 histone deacetylase 6 protein-coding 197.833-34 chr9 1429513 1429832 + 1.66667 NA Intergenic Intergenic 378185 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 198-38 chr6 112157556 112157821 + 1.66667 NA intron (NM_001105206, intron 14 of 38) intron (NM_001105206, intron 14 of 38) 70097 NM_001033564 619208 Hs.591340 NM_001033564 ENSG00000203778 FAM229B C6orf225 family with sequence similarity 229 member B protein-coding 458.168 chr6 75243066 75243555 + 1.66667 NA intron (NM_001865, intron 2 of 4) intron (NM_001865, intron 2 of 4) 491 NR_158783 1347 Hs.70312 NM_001865 ENSG00000112695 COX7A2 COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL cytochrome c oxidase subunit 7A2 protein-coding 283.334-11 chr4 109123751 109124196 + 1.66667 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 178685 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 185.667-22 chr17 32675912 32676098 + 1.66667 NA intron (NM_015194, intron 16 of 21) L1M5|LINE|L1 189012 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 408.001-4 chr3 155387668 155388045 + 1.66667 NA Intergenic Intergenic -94173 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 241.834-10 chr8 119678608 119678874 + 1.66667 NA Intergenic Intergenic -5351 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 326.667 chr1 169485873 169486321 + 1.66667 NA promoter-TSS (NM_001319667) promoter-TSS (NM_001319667) -127 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 224.167-22 chr3 84666965 84667328 + 1.66667 NA non-coding (NR_033860, exon 19 of 21) non-coding (NR_033860, exon 19 of 21) 202429 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 264.834-12 chr8 88324326 88324651 + 1.66667 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 2995 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 240-26 chr17 63193033 63193288 + 1.66667 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 226925 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 430.333-5 chr8 81042292 81042819 + 1.66667 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 69513 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 325-11 chr5 85980199 85980477 + 1.66667 NA Intergenic L1ME4c|LINE|L1 -302106 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 217.333-37 chr6 37177954 37178102 + 1.66667 NA Intergenic Intergenic 7876 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 394.666 chr12 101725539 101725947 + 1.66667 NA intron (NM_020244, intron 7 of 8) intron (NM_020244, intron 7 of 8) 13719 NM_001177949 50511 Hs.506504 NM_153694 ENSG00000139351 SYCP3 COR1|RPRGL4|SCP3|SPGF4 synaptonemal complex protein 3 protein-coding 225-8 chr16 14081757 14081974 + 1.66667 NA intron (NM_001308142, intron 2 of 16) AluJb|SINE|Alu 10546 NM_001365412 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 329.501 chr15 23855514 23855844 + 1.66667 NA Intergenic Intergenic -119468 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 407.5-10 chr2 177735204 177735567 + 1.66667 NA intron (NM_001077197, intron 11 of 20) intron (NM_001077197, intron 11 of 20) 62063 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 166-8 chr10 65340560 65340666 + 1.66667 NA Intergenic MIRb|SINE|MIR -230812 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 272.167-4 chr11 111039979 111040252 + 1.66667 NA Intergenic Intergenic 57203 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 412.334-8 chr9 28229749 28230020 + 1.66667 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 489421 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 237-12 chr14 66788166 66788327 + 1.66667 NA intron (NM_001024218, intron 3 of 21) AluSx1|SINE|Alu 280839 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 485.833-4 chr5 133968411 133969006 + 1.66667 NA promoter-TSS (NM_020199) promoter-TSS (NM_020199) 19 NR_134247 105379183 Hs.543907 NR_134247 LOC105379183 - uncharacterized LOC105379183 ncRNA 362.001-2 chr6 44940597 44940863 + 1.66667 NA intron (NM_181356, intron 11 of 12) L1PB4|LINE|L1 257040 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 273.001-7 chr9 26951239 26951733 + 1.66667 NA intron (NM_001099222, intron 1 of 19) intron (NM_001099222, intron 1 of 19) -4013 NM_001321546 9373 Hs.27182 NM_004253 ENSG00000137055 PLAA DOA1|NDMSBA|PLA2P|PLAP phospholipase A2 activating protein protein-coding 213-8 chr11 46776721 46776882 + 1.66667 NA intron (NM_001008938, intron 23 of 43) (TATTTA)n|Simple_repeat|Simple_repeat -14302 NR_003056 692108 Hs.693252 NR_003056 ENSG00000212135 SNORD67 HBII-166 small nucleolar RNA, C/D box 67 snoRNA 332.667-7 chr2 21949224 21949553 + 1.66667 NA Intergenic Intergenic -238736 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 413.667-3 chr2 70617813 70618170 + 1.66667 NA Intergenic AluSx|SINE|Alu -64165 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 277.667-6 chr12 28226798 28227161 + 1.66667 NA intron (NM_001352082, intron 2 of 13) L1MC3|LINE|L1 -36241 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 242.333-18 chr4 33781274 33781652 + 1.66667 NA Intergenic Intergenic 258430 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 176.667-49 chr5 181193297 181193458 + 1.66667 NA TTS (NM_203296) TTS (NM_203296) -1469 NR_108031 102577426 Hs.277359 NR_108031 ENSG00000248473 LINC01962 - long intergenic non-protein coding RNA 1962 ncRNA 229.167-3 chr1 111673830 111674149 + 1.66667 NA intron (NM_001370217, intron 1 of 7) intron (NM_001370217, intron 1 of 7) 9195 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 207.667-50 chrX 41790900 41791089 + 1.66667 NA intron (NM_003688, intron 2 of 26) intron (NM_003688, intron 2 of 26) 66813 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 322.167-10 chr8 142234896 142235384 + 1.66667 NA intron (NM_001366901, intron 12 of 13) intron (NM_001366901, intron 12 of 13) 36784 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 440.667-6 chr7 1170280 1171396 + 1.66667 NA Intergenic Intergenic 10053 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 276.334-2 chr10 116848012 116848229 + 1.66667 NA intron (NM_001330164, intron 1 of 12) intron (NM_001330164, intron 1 of 12) -1379 NM_001242699 387712 Hs.693248 NM_001242699 ENSG00000188316 ENO4 C10orf134 enolase 4 protein-coding 370.834-8 chr8 89995519 89996019 + 1.66667 NA Intergenic Intergenic -5583 NM_001330575 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 395.167 chr11 66737640 66737898 + 1.66667 NA Intergenic Intergenic -6967 NM_024650 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 HYDM4|TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 423.5-7 chr6 129695035 129695472 + 1.66667 NA intron (NM_033515, intron 1 of 14) MER103C|DNA|hAT-Charlie 14924 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 323-3 chr11 133730101 133730314 + 1.66667 NA Intergenic Intergenic 80169 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 191.5-7 chr10 44528687 44528999 + 1.66667 NA Intergenic L1MB5|LINE|L1 -143746 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 331.667-10 chr4 180829671 180829955 + 1.66667 NA Intergenic Intergenic 329336 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 298.334-5 chr4 96809149 96809366 + 1.66667 NA intron (NR_147149, intron 3 of 3) (TAAT)n|Simple_repeat|Simple_repeat 498554 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 510.834 chr10 101402115 101402824 + 1.66667 NA intron (NM_003939, intron 1 of 13) intron (NM_003939, intron 1 of 13) 48304 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 362.833-6 chr20 20593561 20594000 + 1.66667 NA intron (NM_020343, intron 16 of 39) intron (NM_020343, intron 16 of 39) 118864 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 492.667-3 chrX 16695102 16695538 + 1.66667 NA intron (NM_019857, intron 4 of 18) intron (NM_019857, intron 4 of 18) 16897 NM_001144002 56474 Hs.227049 NM_019857 ENSG00000047230 CTPS2 - CTP synthase 2 protein-coding 375.667-12 chr6 152985554 152985871 + 1.66667 NA Intergenic Intergenic -2133 NM_001142522 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 443-3 chr14 68841344 68841918 + 1.66667 NA Intergenic MLT1B|LTR|ERVL-MaLR -45388 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 304.667-2 chr10 31295698 31296065 + 1.66667 NA Intergenic L1ME3A|LINE|L1 -22536 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 227-23 chr3 148193415 148193611 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -87378 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 277-8 chr13 71630089 71630288 + 1.66667 NA intron (NM_001366712, intron 3 of 11) intron (NM_001366712, intron 3 of 11) 237004 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 275.167-28 chrX 130903259 130903525 + 1.66667 NA promoter-TSS (NM_182314) promoter-TSS (NM_182314) -75 NM_001281736 10495 Hs.171458 NM_006375 ENSG00000165675 ENOX2 APK1|COVA1|tNOX ecto-NOX disulfide-thiol exchanger 2 protein-coding 245-26 chr4 35047292 35047555 + 1.66667 NA Intergenic L1MC3|LINE|L1 -777676 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 454-8 chr20 14555518 14556029 + 1.66667 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 1389 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 375-7 chr14 83848311 83848623 + 1.66667 NA Intergenic A-rich|Low_complexity|Low_complexity 1205835 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 207.5-28 chr4 79492803 79493042 + 1.66667 NA intron (NR_038826, intron 1 of 3) intron (NR_038826, intron 1 of 3) 329 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 215.334-3 chr7 65424518 65424763 + 1.66667 NA Intergenic L1PA12|LINE|L1 50785 NM_007139 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 175-21 chr15 89334884 89335062 + 1.66667 NA promoter-TSS (NM_002693) promoter-TSS (NM_002693) -149 NM_001126131 5428 Hs.706868 NM_002693 ENSG00000140521 POLG MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE DNA polymerase gamma, catalytic subunit protein-coding 315.001 chr10 51063936 51064142 + 1.66667 NA intron (NR_120678, intron 1 of 1) intron (NR_120678, intron 1 of 1) 4513 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 368.667-6 chr15 27780402 27780957 + 1.66667 NA intron (NM_001300984, intron 22 of 22) MER103C|DNA|hAT-Charlie 318636 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 301.667-13 chr3 98907050 98907306 + 1.66667 NA Intergenic Intergenic -5483 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 321.501-3 chr17 4790102 4790396 + 1.66667 NA exon (NM_001014985, exon 4 of 4) exon (NM_001014985, exon 4 of 4) 1285 NM_001014985 388323 Hs.131035 NM_001014985 ENSG00000182327 GLTPD2 - glycolipid transfer protein domain containing 2 protein-coding 429-5 chr14 77071562 77072259 + 1.66667 NA intron (NR_110553, intron 1 of 2) MSTB2|LTR|ERVL-MaLR 4281 NR_110553 102724190 Hs.562528 NR_110553 ENSG00000258819 LINC02289 - long intergenic non-protein coding RNA 2289 ncRNA 322.667-19 chr3 152524051 152524458 + 1.66667 NA Intergenic Tigger3a|DNA|TcMar-Tigger -183264 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 374.667-10 chr5 103043001 103043499 + 1.66667 NA Intergenic MER57B2|LTR|ERV1 76888 NM_001317954 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 253.667-15 chr15 93820340 93820611 + 1.66667 NA Intergenic Intergenic -36085 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 977.667-3 chr9 93312756 93313625 + 1.66667 NA intron (NM_006648, intron 27 of 28) L1MB3|LINE|L1 33113 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 272-33 chrX 26783268 26783485 + 1.66667 NA Intergenic HUERS-P3-int|LTR|ERV1 225039 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 480.667-7 chr5 101390292 101390945 + 1.66667 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -487336 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 312.667-17 chr4 66469726 66470026 + 1.66667 NA Intergenic Intergenic 193052 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 202-33 chr7 3891930 3892074 + 1.66667 NA intron (NM_152744, intron 5 of 44) MLT1I-int|LTR|ERVL-MaLR -237683 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 380.667-2 chr15 97969609 97969877 + 1.66667 NA intron (NM_183376, intron 5 of 7) intron (NM_183376, intron 5 of 7) 9040 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 220-14 chr18 56639969 56640195 + 1.66667 NA Intergenic Intergenic -1490 NR_024546 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 184.167-7 chr11 34287957 34288133 + 1.66667 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 69965 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 381.834 chr10 94096624 94096961 + 1.66667 NA non-coding (NR_120616, exon 4 of 8) non-coding (NR_120616, exon 4 of 8) 7766 NM_001165979 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 499.833 chr16 47141475 47141944 + 1.66667 NA intron (NM_001201477, intron 1 of 8) intron (NM_001201477, intron 1 of 8) 2236 NM_001201477 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 180.333-43 chr4 146821188 146821378 + 1.66667 NA intron (NM_031956, intron 9 of 12) L1MB7|LINE|L1 124581 NR_133922 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 505.5 chr1 186330368 186330955 + 1.66667 NA intron (NM_003292, intron 39 of 50) LTR51|LTR|ERV1 34388 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 198.667-31 chr3 41693411 41693567 + 1.66667 NA intron (NR_136342, intron 25 of 34) L1MC4a|LINE|L1 268614 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 183.167-20 chr2 212705234 212705448 + 1.66667 NA Intergenic Intergenic -89990 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 202.667-41 chr8 105150061 105150259 + 1.66667 NA Intergenic Intergenic -168278 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 296.167-3 chr10 60335656 60335857 + 1.66667 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 54119 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 193.833-24 chr5 103587298 103587566 + 1.66667 NA Intergenic Intergenic -24643 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 445.001-5 chr5 112167057 112167791 + 1.66667 NA intron (NM_022140, intron 22 of 22) LTR16|LTR|ERVL 5939 NR_002922 654322 Hs.689709 NR_002922 ENSG00000238363 SNORA13 ACA13 small nucleolar RNA, H/ACA box 13 snoRNA 192.5-54 chr9 35369279 35369517 + 1.66667 NA intron (NM_006377, intron 11 of 38) MIR3|SINE|MIR 27502 NM_001371187 206.667-30 chr2 184891895 184892080 + 1.66667 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 275085 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 267.5-37 chr6 36028884 36029282 + 1.66667 NA intron (NM_139012, intron 1 of 11) intron (NM_139012, intron 1 of 11) 1275 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 380.5-6 chr19 5720265 5720679 + 1.66667 NA promoter-TSS (NM_004793) promoter-TSS (NM_004793) -20 NM_001276480 9361 Hs.350265 NM_004793 ENSG00000196365 LONP1 CODASS|LON|LONP|LonHS|PIM1|PRSS15|hLON lon peptidase 1, mitochondrial protein-coding 199.834-5 chr2 208502176 208502409 + 1.66667 NA Intergenic L1MC1|LINE|L1 -40350 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 298.667-22 chr9 19064297 19064589 + 1.66667 NA promoter-TSS (NR_003009) promoter-TSS (NR_003009) -657 NR_003009 677776 Hs.689635 NR_003009 ENSG00000251733 SCARNA8 U92 small Cajal body-specific RNA 8 ncRNA 211-24 chr2 28081911 28082073 + 1.66667 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 85625 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 240-47 chr5 33437587 33437880 + 1.66667 NA Intergenic Intergenic -2963 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 249.834-10 chr9 91752948 91753159 + 1.66667 NA intron (NM_001318204, intron 4 of 7) L1M5|LINE|L1 -116708 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 315.667-4 chr11 20111016 20111341 + 1.66667 NA intron (NM_182964, intron 36 of 37) intron (NM_182964, intron 36 of 37) 49297 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 421.001 chr2 73718456 73718793 + 1.66667 NA Intergenic Intergenic -17284 NR_132338 51471 Hs.278983 NM_016347 ENSG00000204872 NAT8B CML2|Hcml2|NAT8BP N-acetyltransferase 8B (putative, gene/pseudogene) protein-coding 446.334-4 chr3 74548536 74549016 + 1.66667 NA Intergenic MER6B|DNA|TcMar-Tigger -27636 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 239.5-15 chr18 3542130 3542277 + 1.66667 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -51911 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 268.834-3 chr11 107705164 107705502 + 1.66667 NA Intergenic Intergenic 6723 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 497.334-3 chr18 69248712 69249103 + 1.66667 NA Intergenic Intergenic -151981 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 505.834-4 chr8 56201985 56202437 + 1.66667 NA intron (NM_002655, intron 1 of 4) intron (NM_002655, intron 1 of 4) 9062 NM_001114635 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 321-6 chr13 50593493 50593744 + 1.66667 NA Intergenic Intergenic -66169 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 220.833-6 chr12 15226999 15227226 + 1.66667 NA Intergenic L1MEg|LINE|L1 -5695 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 262.334-2 chr1 100324464 100324672 + 1.66667 NA Intergenic Intergenic -20447 NM_001319211 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 321.999-4 chr21 35441693 35442100 + 1.66667 NA intron (NR_073512, intron 2 of 2) intron (NR_073512, intron 2 of 2) 138868 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 390.833-2 chr8 88460140 88460590 + 1.66667 NA Intergenic L1MCb|LINE|L1 -132882 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 244.834-5 chr7 2885964 2886247 + 1.66667 NA Intergenic L1ME3Cz|LINE|L1 -41797 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 237.667-43 chrX 79331427 79331619 + 1.66667 NA Intergenic MER51D|LTR|ERV1 35811 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 414.167-7 chr6 70040654 70041030 + 1.66667 NA intron (NM_001858, intron 14 of 50) intron (NM_001858, intron 14 of 50) 174286 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 478.667-5 chr9 14661447 14661742 + 1.66667 NA intron (NR_148717, intron 7 of 11) intron (NR_148717, intron 7 of 11) 31838 NR_148717 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 290.501-3 chr6 149171928 149172132 + 1.66667 NA Intergenic Intergenic -45894 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 360.667-5 chr2 214854327 214854550 + 1.66667 NA intron (NR_110292, intron 2 of 3) intron (NR_110292, intron 2 of 3) 7491 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 328.834-2 chr13 62014046 62014427 + 1.66667 NA intron (NR_046995, intron 1 of 1) intron (NR_046995, intron 1 of 1) 15312 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 169.167-7 chr10 28593050 28593171 + 1.66667 NA intron (NM_100486, intron 6 of 12) intron (NM_100486, intron 6 of 12) 59992 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 225 chr1 49364754 49364922 + 1.66667 NA intron (NR_136623, intron 2 of 12) MIR|SINE|MIR 107247 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 210.167-23 chr22 26038425 26038679 + 1.66667 NA Intergenic LTR16D|LTR|ERVL -130910 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 332.667-11 chr2 121768958 121769403 + 1.66667 NA Intergenic Intergenic 13529 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 223.334-2 chr14 75835324 75835529 + 1.66667 NA intron (NM_015072, intron 28 of 31) intron (NM_015072, intron 28 of 31) 146569 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 359.333-4 chr14 20187976 20188263 + 1.66667 NA Intergenic L1PA16|LINE|L1 -9217 NM_001005503 390439 Hs.554582 NM_001005503 ENSG00000196832 OR11G2 OR14-34 olfactory receptor family 11 subfamily G member 2 protein-coding 439.167-6 chr2 53740363 53740789 + 1.66667 NA intron (NM_001201965, intron 2 of 8) intron (NM_001201965, intron 2 of 8) -27207 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 687.501 chr2 33583193 33583672 + 1.66667 NA TTS (NM_001304538) TTS (NM_001304538) -14002 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 339.667-9 chr16 72467047 72467383 + 1.66667 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 197755 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 305-11 chr21 24195160 24195495 + 1.66667 NA Intergenic Intergenic 126050 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 314.667-12 chr5 7856822 7857105 + 1.66667 NA Intergenic Intergenic -5830 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 254.334-6 chr5 150790098 150790361 + 1.66667 NA intron (NM_032947, intron 1 of 1) intron (NM_032947, intron 1 of 1) 12283 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 217-33 chr7 43662049 43662209 + 1.66667 NA intron (NM_001371308, intron 1 of 7) Charlie1|DNA|hAT-Charlie 67394 NM_001371309 429.501-2 chr6 25992706 25992975 + 1.66667 NA Intergenic CpG 24972 NM_005325 3024 Hs.150206 NM_005325 ENSG00000124610 HIST1H1A H1.1|H1A|H1F1|HIST1 histone cluster 1 H1 family member a protein-coding 309.334-7 chr4 128821701 128821974 + 1.66667 NA intron (NM_001287443, intron 1 of 10) intron (NM_001287443, intron 1 of 10) 9993 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 219-12 chr17 43125352 43125611 + 1.66667 NA promoter-TSS (NM_007300) promoter-TSS (NM_007300) 2 NM_007294 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 409-9 chr9 95778768 95779237 + 1.66667 NA Intergenic Intergenic -96689 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 357.167-4 chr3 23593240 23593545 + 1.66667 NA Intergenic Intergenic -212563 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 427.334-4 chr2 181881623 181882004 + 1.66667 NA Intergenic Intergenic -9917 NM_001130445 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 338.667-2 chr12 8502174 8502581 + 1.66667 NA Intergenic MER3|DNA|hAT-Charlie -11126 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 352-6 chr2 181178590 181179217 + 1.66667 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 55066 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 383.333-2 chr1 110241314 110241686 + 1.66667 NA 3' UTR (NM_004978, exon 4 of 4) 3' UTR (NM_004978, exon 4 of 4) 31186 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 223.833-21 chr7 71850618 71850938 + 1.66667 NA intron (NM_001363460, intron 4 of 5) L1M5|LINE|L1 486613 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 184.834-7 chr2 27214211 27214369 + 1.66667 NA intron (NM_016085, intron 2 of 6) L2c|LINE|L2 1939 NM_016085 51374 Hs.9527 NM_016085 ENSG00000138085 ATRAID APR--3|APR-3|APR3|C2orf28|HSPC013|PRO240|p18 all-trans retinoic acid induced differentiation factor protein-coding 264.667-10 chr2 218975917 218976252 + 1.66667 NA promoter-TSS (NR_015390) promoter-TSS (NR_015390) -200 NR_024385 151300 Hs.420716 NR_015390 LINC00608 - long intergenic non-protein coding RNA 608 ncRNA 480.834-2 chr8 104492402 104492841 + 1.66667 NA intron (NM_013437, intron 6 of 6) intron (NM_013437, intron 6 of 6) -8156 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 293-14 chr3 87475062 87475489 + 1.66667 NA Intergenic THE1D|LTR|ERVL-MaLR -198691 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 325.167-10 chr20 38488109 38488418 + 1.66667 NA intron (NM_020336, intron 1 of 29) MER112|DNA|hAT-Charlie 15420 NM_001282918 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 431.001-2 chr17 63321929 63322331 + 1.66667 NA intron (NM_025185, intron 10 of 25) intron (NM_025185, intron 10 of 25) 118137 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 286.667-24 chr7 56291158 56291371 + 1.66667 NA Intergenic Intergenic 157111 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 181.5-29 chr3 5188565 5188861 + 1.66667 NA intron (NM_014674, intron 1 of 11) MamRep1879|DNA|hAT-Tip100? 1006 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 200.667-19 chr16 79858791 79859005 + 1.66667 NA Intergenic Intergenic 63649 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 345-15 chr3 180068921 180069404 + 1.66667 NA Intergenic L2c|LINE|L2 -32225 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 470.834-5 chr9 98260470 98260807 + 1.66667 NA Intergenic Intergenic -4989 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 481.834-2 chr10 70867595 70868029 + 1.66667 NA intron (NM_003901, intron 7 of 14) intron (NM_003901, intron 7 of 14) 20069 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 318.5-7 chr4 35791777 35792285 + 1.66667 NA Intergenic Intergenic 451908 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 399.667-10 chr8 117026740 117027203 + 1.66667 NA intron (NM_001172813, intron 2 of 10) MIRb|SINE|MIR 75996 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 288-23 chr6 61833059 61833306 + 1.66667 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 259052 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 305.667-9 chr3 100260072 100260479 + 1.66667 NA promoter-TSS (NM_018309) promoter-TSS (NM_018309) -717 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 387.667-2 chr12 56394880 56395361 + 1.66667 NA Intergenic L1MDa|LINE|L1 -32263 NM_001638 319 Hs.534302 NM_001638 ENSG00000175336 APOF Apo-F|LTIP apolipoprotein F protein-coding 228.167-20 chr3 1381619 1381798 + 1.66667 NA intron (NM_001289080, intron 17 of 22) intron (NM_001289080, intron 17 of 22) 288684 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 321.334 chr13 113724478 113724959 + 1.66667 NA intron (NM_002929, intron 4 of 6) intron (NM_002929, intron 4 of 6) 26371 NR_028064 100130386 Hs.704121 NM_001137672 ENSG00000279770 LINC00552 - long intergenic non-protein coding RNA 552 ncRNA 221.5-29 chr8 95758819 95759068 + 1.66667 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 189405 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 287.334-3 chr14 55333498 55333843 + 1.66667 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 61516 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 216.667-18 chr14 100378002 100378242 + 1.66667 NA intron (NM_001350947, intron 1 of 6) intron (NM_001350947, intron 1 of 6) 1637 NM_001350947 79446 Hs.497599 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 950.499 chr2 196067619 196068905 + 1.66667 NA intron (NM_018897, intron 1 of 64) MIRc|SINE|MIR 575 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 440.334-3 chr4 1899217 1899656 + 1.66667 NA intron (NM_007331, intron 3 of 10) MER20|DNA|hAT-Charlie -1190 NM_133334 7468 Hs.113876 NM_007331 ENSG00000109685 NSD2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 nuclear receptor binding SET domain protein 2 protein-coding 347.667-3 chr12 102354838 102355233 + 1.66667 NA Intergenic THE1C-int|LTR|ERVL-MaLR 123515 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 354.167-4 chr2 52451331 52451661 + 1.66667 NA Intergenic Intergenic 80848 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 296.334-11 chr7 83935885 83936343 + 1.66667 NA Intergenic Intergenic 258675 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 531.834-2 chr7 16695614 16696142 + 1.66667 NA intron (NM_001362717, intron 8 of 11) intron (NM_001362717, intron 8 of 11) 34664 NM_001362717 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 346.667-8 chr2 123206899 123207327 + 1.66667 NA Intergenic Intergenic -133632 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 173.334-6 chr3 95011939 95012058 + 1.66667 NA Intergenic MIRc|SINE|MIR 73735 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 243.833-18 chr22 22171707 22171946 + 1.66667 NA Intergenic Intergenic -72960 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 189.5-18 chr17 75030990 75031261 + 1.66667 NA Intergenic U6|snRNA|snRNA -1442 NR_110835 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 259.834-7 chrX 34638090 34638425 + 1.66667 NA intron (NM_031442, intron 2 of 2) intron (NM_031442, intron 2 of 2) 19028 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 368.333-3 chr12 39034984 39035376 + 1.66667 NA Intergenic Intergenic -129589 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 276.167-23 chr7 73952531 73952799 + 1.66667 NA Intergenic L1ME1|LINE|L1 -75124 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 456.5-4 chr3 97161806 97162252 + 1.66667 NA intron (NM_001080448, intron 3 of 17) ERVL-B4-int|LTR|ERVL -277578 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 509.668 chr11 103524777 103525113 + 1.66667 NA Intergenic L1MC3|LINE|L1 -324961 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 203.5-27 chr22 27858686 27858880 + 1.66667 NA intron (NM_001284278, intron 9 of 11) intron (NM_001284278, intron 9 of 11) -57027 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 245.833-18 chr2 180208870 180209111 + 1.66667 NA Intergenic L1MDa|LINE|L1 -201693 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 431.334-3 chr4 151802346 151802684 + 1.66667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -41492 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 227.5 chr1 9958581 9958764 + 1.66667 NA intron (NR_158969, intron 1 of 4) AluSg|SINE|Alu 2115 NR_158969 113391335 NR_158969 TMEM274P - transmembrane protein 274, pseudogene pseudo 406.667-3 chr4 113094983 113095390 + 1.66667 NA intron (NM_001354232, intron 1 of 46) intron (NM_001354232, intron 1 of 46) -11677 NR_031641 100302188 NR_031641 ENSG00000283193 MIR1243 MIRN1243|hsa-mir-1243 microRNA 1243 ncRNA 240.334-5 chr3 57499128 57499299 + 1.66667 NA intron (NM_198564, intron 11 of 11) L1ME1|LINE|L1 45131 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 460.834-3 chr4 47300909 47301340 + 1.66667 NA intron (NM_000812, intron 4 of 8) LTR37-int|LTR|ERV1 162578 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 289-4 chr10 118317983 118318311 + 1.66667 NA intron (NM_022063, intron 7 of 8) intron (NM_022063, intron 7 of 8) 24177 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 243.167-6 chr14 77040275 77040489 + 1.66667 NA promoter-TSS (NR_110554) promoter-TSS (NR_110554) -667 NR_110554 283575 Hs.651736 NR_110554 ENSG00000246548 LINC02288 - long intergenic non-protein coding RNA 2288 ncRNA 421.334-3 chr4 55840276 55840593 + 1.66667 NA Intergenic L1MC4a|LINE|L1 -13214 NM_001024924 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 286.666-4 chr17 58414880 58415352 + 1.66667 NA intron (NM_001305544, intron 2 of 9) intron (NM_001305544, intron 2 of 9) 2418 NM_001305544 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 365.334-5 chr19 27973872 27974182 + 1.66667 NA intron (NR_146734, intron 6 of 7) intron (NR_146734, intron 6 of 7) -180087 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 385 chr1 224589109 224589367 + 1.66667 NA intron (NR_136294, intron 4 of 8) intron (NR_136294, intron 4 of 8) -27079 NM_152495 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 168.333-48 chr4 69768314 69768536 + 1.66667 NA Intergenic MER91B|DNA|hAT-Tip100 -7805 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 180.334-6 chr7 54505065 54505177 + 1.66667 NA Intergenic L1M4a2|LINE|L1 -37204 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 232.667-11 chr13 104299493 104299886 + 1.66667 NA Intergenic Intergenic 874489 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 444.5-2 chr1 89994759 89995085 + 1.66667 NA promoter-TSS (NR_002830) promoter-TSS (NR_002830) 44 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 338.334 chr1 151258382 151258626 + 1.66667 NA intron (NM_001330692, intron 1 of 9) AluJb|SINE|Alu 3770 NM_002810 5710 Hs.505059 NM_002810 ENSG00000159352 PSMD4 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 proteasome 26S subunit, non-ATPase 4 protein-coding 192.5-14 chr14 82794683 82794936 + 1.66667 NA Intergenic Intergenic 152177 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 189-24 chr18 9823506 9823640 + 1.66667 NA intron (NM_006868, intron 5 of 6) L1MD2|LINE|L1 -62400 NM_001098529 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 244.334-2 chr10 47066722 47066921 + 1.66667 NA Intergenic L1ME3G|LINE|L1 155099 NM_001042361 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 544.168 chr16 55579376 55579705 + 1.66667 NA intron (NM_017839, intron 13 of 13) MIR|SINE|MIR 12856 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 CSS2 calpain small subunit 2 protein-coding 241.5-24 chr8 106857562 106857858 + 1.66667 NA Intergenic Intergenic -87466 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 603.334-2 chr6 39114471 39115076 + 1.66667 NA intron (NM_001304793, intron 1 of 2) CpG 413 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 293.334-3 chr12 54294352 54294631 + 1.66667 NA intron (NM_001261461, intron 3 of 3) intron (NM_001261461, intron 3 of 3) 1288 NM_006163 4778 Hs.75643 NM_006163 ENSG00000123405 NFE2 NF-E2|p45 nuclear factor, erythroid 2 protein-coding 251.334-6 chr12 119401755 119402200 + 1.66667 NA intron (NM_178499, intron 1 of 13) MIR|SINE|MIR 67248 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 278.667-2 chr1 169139382 169139602 + 1.66667 NA intron (NR_104229, intron 12 of 12) MIR|SINE|MIR 32802 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 367-22 chr5 141146321 141146760 + 1.66667 NA Intergenic L1MDa|LINE|L1 -3482 NM_018939 56130 Hs.283085 NM_018939 ENSG00000113211 PCDHB6 PCDH-BETA6 protocadherin beta 6 protein-coding 288.167-6 chr11 20671801 20672078 + 1.66667 NA intron (NM_201551, intron 1 of 18) L2c|LINE|L2 2353 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 396.334-4 chr2 231168066 231168447 + 1.66667 NA intron (NM_001191037, intron 22 of 23) L1MB7|LINE|L1 -30375 NM_025139 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 186.667-35 chr2 38039336 38039516 + 1.66667 NA intron (NM_144713, intron 10 of 10) intron (NM_144713, intron 10 of 10) -3085 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 635.833 chr10 4981596 4982478 + 1.66667 NA 3' UTR (NM_001353, exon 9 of 9) 3' UTR (NM_001353, exon 9 of 9) 18622 NM_001353 1645 Hs.460260 NM_001353 ENSG00000187134 AKR1C1 2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB aldo-keto reductase family 1 member C1 protein-coding 453.666-5 chr8 124779420 124780017 + 1.66667 NA Intergenic L1M5|LINE|L1 -42267 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 401.501 chr14 44233675 44233968 + 1.66667 NA Intergenic L1MA9|LINE|L1 273462 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 316.667-15 chr6 119333154 119333448 + 1.66667 NA intron (NM_005907, intron 2 of 12) intron (NM_005907, intron 2 of 12) 16460 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 203.834-7 chr8 77018599 77018805 + 1.66667 NA Intergenic Intergenic -17658 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 386.667-12 chrX 58045894 58046291 + 1.66667 NA Intergenic Intergenic -135459 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 327.5 chr1 224227242 224227519 + 1.66667 NA TTS (NM_001243146) TTS (NM_001243146) 7767 NR_110668 101927164 Hs.710128 NR_110668 ENSG00000237101 LOC101927164 - uncharacterized LOC101927164 ncRNA 349.667-4 chr14 101651323 101651540 + 1.66667 NA Intergenic L1MEg|LINE|L1 -79006 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 196.167-35 chr7 47710999 47711139 + 1.66667 NA Intergenic Intergenic -50407 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 262-4 chr11 23249152 23249329 + 1.66667 NA Intergenic L1MA4|LINE|L1 169950 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 307.5-23 chr8 67062134 67062523 + 1.66667 NA promoter-TSS (NM_006837) promoter-TSS (NM_006837) -195 NM_006837 10987 Hs.491912 NM_006837 ENSG00000121022 COPS5 CSN5|JAB1|MOV-34|SGN5 COP9 signalosome subunit 5 protein-coding 260.5-10 chr14 83408690 83408870 + 1.66667 NA Intergenic Intergenic 766148 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 337.833-11 chr8 38066915 38067376 + 1.66667 NA Intergenic Intergenic 36611 NM_004095 1978 Hs.411641 NM_004095 ENSG00000187840 EIF4EBP1 4E-BP1|4EBP1|BP-1|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 protein-coding 591 chr15 75694437 75694858 + 1.66667 NA intron (NM_001897, intron 1 of 9) intron (NM_001897, intron 1 of 9) 18201 NM_001897 1464 Hs.513044 NM_001897 ENSG00000173546 CSPG4 HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2 chondroitin sulfate proteoglycan 4 protein-coding 326.334-5 chr3 85611227 85611532 + 1.66667 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 106320 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 189-11 chr10 112434675 112434844 + 1.66667 NA intron (NM_001363544, intron 6 of 11) intron (NM_001363544, intron 6 of 11) 12155 NM_022494 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 282.501 chr1 169344649 169344846 + 1.66667 NA intron (NR_104229, intron 1 of 12) L1M4|LINE|L1 23050 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 261-8 chr15 76418410 76418697 + 1.66667 NA intron (NR_148227, intron 27 of 32) L1M2c|LINE|L1 81780 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 298.167-15 chr9 10053989 10054339 + 1.66667 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 254772 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 355-6 chr2 199916077 199916470 + 1.66667 NA intron (NM_153689, intron 1 of 1) THE1C|LTR|ERVL-MaLR 4980 NM_153689 205327 Hs.154494 NM_153689 ENSG00000178074 C2orf69 - chromosome 2 open reading frame 69 protein-coding 444.167-5 chr7 16478022 16478404 + 1.66667 NA Intergenic Intergenic -12475 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 234.167 chr1 29751141 29751292 + 1.66667 NA Intergenic Intergenic 286396 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 274-10 chr13 79678375 79678747 + 1.66667 NA Intergenic LTR78|LTR|ERV1 111834 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 181-34 chr5 31261908 31262027 + 1.66667 NA intron (NM_001362435, intron 1 of 10) MamRep434|DNA|TcMar-Tigger 68281 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 511.333-8 chr8 32721167 32721776 + 1.66667 NA promoter-TSS (NM_001159996) promoter-TSS (NM_001159996) -282 NM_001159996 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 316-6 chr2 68566883 68567218 + 1.66667 NA intron (NM_173545, intron 8 of 9) intron (NM_173545, intron 8 of 9) -76538 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 315.334-8 chr5 38710107 38710375 + 1.66667 NA TTS (NR_104631) TTS (NR_104631) 10032 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 275.667-14 chr2 150530011 150530232 + 1.66667 NA Intergenic Intergenic 42100 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 222.167-37 chr8 7035729 7035994 + 1.66667 NA Intergenic Intergenic -6372 NR_073421 724068 Hs.690600 NR_073421 ENSG00000234178 DEFA11P DEFAP3 defensin alpha 11, pseudogene pseudo 333.5-6 chr14 69751778 69751989 + 1.66667 NA Intergenic Charlie2b|DNA|hAT-Charlie -15259 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 429.5-10 chrX 100388297 100388752 + 1.66667 NA intron (NM_020766, intron 2 of 4) L1ME4a|LINE|L1 21749 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 451.667-2 chr15 62535807 62536273 + 1.66667 NA Intergenic Intergenic 109141 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 254.667-37 chrX 112656157 112656369 + 1.66667 NA intron (NM_178175, intron 3 of 3) L1MB7|LINE|L1 23675 NM_178175 340596 Hs.297420 NM_178175 ENSG00000182508 LHFPL1 - LHFPL tetraspan subfamily member 1 protein-coding 246.333-23 chr2 52676264 52676538 + 1.66667 NA Intergenic Intergenic 26214 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 264.334-10 chr8 17481214 17481424 + 1.66667 NA Intergenic Intergenic -15769 NM_001008539 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 213.167-19 chr4 33909586 33909747 + 1.66667 NA intron (NR_125902, intron 4 of 4) L1ME1|LINE|L1 130227 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 302.167-16 chr8 122670808 122671432 + 1.66667 NA intron (NR_126348, intron 3 of 3) HAL1|LINE|L1 22986 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 297.667-7 chr12 6062891 6063100 + 1.66667 NA exon (NM_000552, exon 13 of 52) exon (NM_000552, exon 13 of 52) -22812 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 188.334-9 chr6 24475005 24475135 + 1.66667 NA intron (NM_001503, intron 5 of 24) intron (NM_001503, intron 5 of 24) 14508 NM_001503 2822 Hs.533291 NM_001503 ENSG00000112293 GPLD1 GPIPLD|GPIPLDM|PIGPLD|PIGPLD1|PLD glycosylphosphatidylinositol specific phospholipase D1 protein-coding 243.834-2 chr12 19780586 19780914 + 1.66667 NA Intergenic L1PREC2|LINE|L1 -233935 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 238.667-4 chr11 119005785 119006004 + 1.66667 NA intron (NR_104051, intron 4 of 10) intron (NR_104051, intron 4 of 10) -2301 NR_003040 649946 Hs.647213 NR_003040 RPL23AP64 RPL23A_25_1182 ribosomal protein L23a pseudogene 64 pseudo 233.167-13 chr3 190486397 190486592 + 1.66667 NA Intergenic Intergenic -27591 NM_001167931 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 617.667 chr1 93437947 93438602 + 1.66667 NA Intergenic Intergenic -9844 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 290.167-3 chr11 77914511 77914690 + 1.66667 NA intron (NM_033547, intron 15 of 22) MER58A|DNA|hAT-Charlie 73462 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 222.5-25 chr22 26988212 26988382 + 1.66667 NA Intergenic Intergenic 72221 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 212.167-4 chr11 132707856 132708382 + 1.66667 NA intron (NM_001319104, intron 1 of 6) L3|LINE|CR1 235518 NM_002545 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 229.834-2 chr3 115424462 115424699 + 1.66667 NA Intergenic MER63B|DNA|hAT-Blackjack -198930 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 424-7 chr5 92376171 92376502 + 1.66667 NA Intergenic Intergenic -993019 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 327-4 chr11 91749460 91749765 + 1.66667 NA Intergenic LTR8B|LTR|ERV1 -475422 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 170-53 chr7 72090562 72090745 + 1.66667 NA intron (NM_001363460, intron 3 of 5) L1MA4|LINE|L1 246738 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 253.667-30 chr4 121146634 121146910 + 1.66667 NA intron (NM_001128843, intron 10 of 12) intron (NM_001128843, intron 10 of 12) 17549 NM_024873 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 355.667 chr12 15258648 15258954 + 1.66667 NA Intergenic L1MEc|LINE|L1 -37384 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 328.334-8 chr6 128676087 128676423 + 1.66667 NA Intergenic Intergenic -155656 NM_001291984 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 179.334-10 chr6 136381026 136381155 + 1.66667 NA intron (NM_001198611, intron 5 of 16) intron (NM_001198611, intron 5 of 16) 85785 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 207.667-26 chr22 22753682 22754155 + 1.66667 NA Intergenic Intergenic -68858 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 251.667-22 chr2 225157455 225157622 + 1.66667 NA Intergenic (TAATAC)n|Simple_repeat|Simple_repeat -115070 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 245.334-8 chr2 105659736 105659953 + 1.66667 NA Intergenic L1MB2|LINE|L1 -49285 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 232.334-13 chr8 127753982 127754156 + 1.66667 NA Intergenic Intergenic 17838 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 339.001-3 chr8 116001080 116001288 + 1.66667 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 323875 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 689.168 chr6 150403287 150404189 + 1.66667 NA non-coding (NR_134655, exon 6 of 6) non-coding (NR_134655, exon 6 of 6) 34726 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 292.5-15 chr21 31682524 31682873 + 1.66667 NA intron (NM_020706, intron 19 of 19) intron (NM_020706, intron 19 of 19) 23076 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 204.333-30 chr3 179649712 179650001 + 1.66667 NA Intergenic AluSg4|SINE|Alu -3184 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 168.334-7 chr5 119470917 119471071 + 1.66667 NA intron (NM_000414, intron 2 of 23) intron (NM_000414, intron 2 of 23) 18497 NM_001199292 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 314.333-5 chr15 89166289 89166600 + 1.66667 NA intron (NM_007011, intron 9 of 14) intron (NM_007011, intron 9 of 14) 55135 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 219.333-17 chr16 17836731 17837186 + 1.66667 NA Intergenic MLT1I|LTR|ERVL-MaLR -365998 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 383-14 chr9 18488911 18489369 + 1.66667 NA intron (NM_052866, intron 1 of 12) MER5B|DNA|hAT-Charlie 14987 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 191-42 chr6 142883297 142883482 + 1.66667 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 61787 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 222.5-33 chr8 36602304 36602447 + 1.66667 NA Intergenic LTR51|LTR|ERV1 -181999 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 532.001 chr4 51885099 51885589 + 1.66667 NA intron (NM_001040402, intron 5 of 10) L2|LINE|L2 41765 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 192-21 chr2 154453059 154453265 + 1.66667 NA 3' UTR (NM_001301627, exon 12 of 12) 3' UTR (NM_001301627, exon 12 of 12) 4276 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 463.667-7 chr3 98906401 98906800 + 1.66667 NA Intergenic Intergenic -4905 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 196.333-4 chr1 175353347 175353634 + 1.66667 NA intron (NM_003285, intron 18 of 22) MIRc|SINE|MIR -160503 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 413.833-4 chr3 112990860 112991302 + 1.66667 NA promoter-TSS (NM_014170) promoter-TSS (NM_014170) 97 NM_014170 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 291.667-7 chr2 22055313 22055541 + 1.66667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -344775 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 289.333-17 chr20 63291195 63291652 + 1.66667 NA Intergenic Intergenic -1763 NM_020882 57642 Hs.271285 NM_020882 ENSG00000101203 COL20A1 - collagen type XX alpha 1 chain protein-coding 277.501-2 chrX 108699310 108699507 + 1.66667 NA Intergenic Intergenic 36969 NM_003604 8471 Hs.407141 NM_003604 ENSG00000133124 IRS4 IRS-4|PY160 insulin receptor substrate 4 protein-coding 242.166-3 chr11 102341882 102342199 + 1.66667 NA Intergenic LTR55|LTR|ERVL? -5142 NM_001166 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 278.5-11 chr2 75755935 75756276 + 1.66667 NA Intergenic MLT1N2|LTR|ERVL-MaLR -45190 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 276.667-13 chr18 7638631 7638868 + 1.66667 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 71433 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 352.667-9 chr5 20309523 20309832 + 1.66667 NA intron (NR_146519, intron 1 of 1) intron (NR_146519, intron 1 of 1) 4126 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 664.667-5 chr5 135829887 135830680 + 1.66667 NA intron (NM_001349335, intron 4 of 10) intron (NM_001349335, intron 4 of 10) -4380 NR_146141 153328 Hs.412418 NM_145282 ENSG00000145832 SLC25A48 - solute carrier family 25 member 48 protein-coding 558.667-3 chr6 22514346 22514876 + 1.66667 NA Intergenic Intergenic -54955 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 483 chr1 26860940 26861592 + 1.66667 NA Intergenic Intergenic -1883 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 187.834-7 chr2 81211908 81212075 + 1.66667 NA Intergenic MER5A|DNA|hAT-Charlie 254955 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 465.001-2 chr11 93957713 93958280 + 1.66667 NA Intergenic Intergenic -63358 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 589.168 chr10 28594445 28594857 + 1.66667 NA intron (NM_100486, intron 6 of 12) intron (NM_100486, intron 6 of 12) 61533 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 228.334-12 chr8 129321139 129321668 + 1.66667 NA Intergenic Intergenic -80163 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 343.667-10 chr21 15842210 15842570 + 1.66667 NA intron (NM_001283042, intron 17 of 24) intron (NM_001283042, intron 17 of 24) 112408 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 259.333-27 chr5 35436422 35436677 + 1.66667 NA Intergenic Intergenic -181314 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 357.501 chr2 170791773 170792227 + 1.66667 NA intron (NM_001289947, intron 2 of 4) intron (NM_001289947, intron 2 of 4) 8209 NM_001289947 285141 Hs.443729 NM_001289947 ENSG00000204334 ERICH2 - glutamate rich 2 protein-coding 473.834-4 chr3 188950793 188951140 + 1.66667 NA Intergenic Intergenic -3327 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 175.334-8 chrX 102836227 102836408 + 1.66667 NA intron (NR_146590, intron 3 of 6) intron (NR_146590, intron 3 of 6) 67164 NR_146592 100287765 Hs.556850 NR_038988 LINC00630 - long intergenic non-protein coding RNA 630 ncRNA 323.667-25 chr9 95833139 95833432 + 1.66667 NA intron (NR_023390, intron 2 of 2) intron (NR_023390, intron 2 of 2) -42406 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 246.667-20 chr6 51370304 51370591 + 1.66667 NA Intergenic Intergenic -251423 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 223.167-21 chrX 44012667 44012998 + 1.66667 NA Intergenic Intergenic -39442 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 461.667 chr17 66162477 66162937 + 1.66667 NA intron (NM_001353129, intron 4 of 26) L1ME3|LINE|L1 29185 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 435.334-2 chr5 124660802 124661378 + 1.66667 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 84022 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 211-49 chr9 1033264 1033422 + 1.66667 NA Intergenic Intergenic -14800 NR_110643 102800446 Hs.171043 NR_110643 LINC01230 TCONS_00015639|linc-DMRT2|lnc-DRMT2 long intergenic non-protein coding RNA 1230 ncRNA 317.667-7 chr2 27227839 27228191 + 1.66667 NA intron (NM_001306079, intron 14 of 42) intron (NM_001306079, intron 14 of 42) 10625 NM_001306079 790 Hs.377010 NM_004341 ENSG00000084774 CAD CDG1Z|EIEE50|GATD4 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase protein-coding 296.167-2 chr10 58491534 58491748 + 1.66667 NA Intergenic L1MB1|LINE|L1 -21231 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 418.334-4 chr3 141231419 141231746 + 1.66667 NA promoter-TSS (NM_152282) promoter-TSS (NM_152282) -243 NM_152282 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 409.167-4 chr2 124076100 124076390 + 1.66667 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 50958 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 202.167-28 chr3 197029812 197030026 + 1.66667 NA promoter-TSS (NM_033316) promoter-TSS (NM_033316) -102 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 267.667-16 chr6 67681034 67681238 + 1.66667 NA Intergenic Intergenic -374215 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 169-32 chr2 167944025 167944197 + 1.66667 NA Intergenic Intergenic -2967 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 382.167-12 chrX 23310300 23310677 + 1.66667 NA Intergenic Intergenic -17342 NR_073010 100873065 Hs.628459 NR_046436 PTCHD1-AS DDX53-AS1|PTCHD1AS1|PTCHD1AS2 PTCHD1 antisense RNA (head to head) ncRNA 276.834-5 chr20 46785384 46785678 + 1.66667 NA Intergenic L2a|LINE|L2 75882 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 336-11 chr2 180738122 180738373 + 1.66667 NA intron (NR_104324, intron 3 of 4) MER31A|LTR|ERV1 46143 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 188.667-48 chr8 62587090 62587255 + 1.66667 NA intron (NM_001304533, intron 2 of 6) intron (NM_001304533, intron 2 of 6) 338318 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 314.333-14 chr8 67156077 67156365 + 1.66667 NA intron (NM_001363133, intron 16 of 27) MIRc|SINE|MIR 72373 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 456.001 chr15 71480553 71480890 + 1.66667 NA intron (NM_024817, intron 6 of 16) MLT1H2|LTR|ERVL-MaLR -66515 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 233.334-10 chr9 26848076 26848226 + 1.66667 NA intron (NM_001167575, intron 5 of 5) intron (NM_001167575, intron 5 of 5) 44651 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 413.668 chr6 63735629 63735977 + 1.66667 NA intron (NM_001142800, intron 41 of 42) L1MC4|LINE|L1 -71033 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 347.834 chr14 22307411 22307912 + 1.66667 NA Intergenic Intergenic 125092 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 215.667-36 chr4 142817557 142817717 + 1.66667 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 28898 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 259.667-14 chr4 12845202 12845433 + 1.66667 NA Intergenic MLT1B|LTR|ERVL-MaLR 621866 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 319.167-15 chr4 114773036 114773330 + 1.66667 NA Intergenic Intergenic 116424 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 297.834-3 chr12 25241131 25241409 + 1.66667 NA intron (NM_001369786, intron 2 of 5) intron (NM_001369786, intron 2 of 5) 9659 NM_004985 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 298.667-3 chr10 62693297 62693556 + 1.66667 NA Intergenic MIRb|SINE|MIR -111294 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 178.667-10 chr11 61933118 61933291 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR -12920 NM_001271686 5866 Hs.13759 NM_013401 ENSG00000167994 RAB3IL1 GRAB RAB3A interacting protein like 1 protein-coding 434.167-2 chr15 58217946 58218296 + 1.66667 NA Intergenic L1PA16|LINE|L1 79740 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 417.5-6 chr14 54191035 54191426 + 1.66667 NA Intergenic L2b|LINE|L2 -205638 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 259.5-2 chr1 160996274 160996511 + 1.66667 NA 3' UTR (NM_016946, exon 10 of 10) 3' UTR (NM_016946, exon 10 of 10) 24760 NM_001348091 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 217.501 chr19 52074283 52074432 + 1.66667 NA intron (NM_001369830, intron 2 of 2) intron (NM_001369830, intron 2 of 2) 19914 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 458.333-3 chr2 198281453 198282100 + 1.66667 NA Intergenic L1MB3|LINE|L1 93321 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 324.667-15 chr20 13727585 13727825 + 1.66667 NA intron (NM_001276380, intron 11 of 13) intron (NM_001276380, intron 11 of 13) 57181 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 276.667-6 chr11 85149919 85150287 + 1.66667 NA intron (NM_001142699, intron 5 of 27) AluY|SINE|Alu -226682 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 318.833-4 chr22 27213591 27213985 + 1.66667 NA Intergenic L2c|LINE|L2 10891 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 325-7 chr17 10625332 10625657 + 1.66667 NA TTS (NR_125367) TTS (NR_125367) 31815 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 371.667 chr1 99666980 99667373 + 1.66667 NA intron (NM_017734, intron 2 of 7) intron (NM_017734, intron 2 of 7) 21063 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 276.334-3 chr14 90181213 90181508 + 1.66667 NA intron (NM_022054, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR -75193 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 447.834 chr3 69998892 69999451 + 1.66667 NA promoter-TSS (NR_110000) promoter-TSS (NR_110000) -573 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 211-11 chr11 87447333 87447532 + 1.66667 NA Intergenic Intergenic 271979 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 297.667-2 chr1 111636032 111636237 + 1.66667 NA intron (NM_001010935, intron 2 of 8) Tigger12c|DNA|TcMar-Tigger -15736 NR_160737 107985184 NR_160737 LOC107985184 - uncharacterized LOC107985184 ncRNA 331-5 chr11 64775418 64775735 + 1.66667 NA intron (NM_201995, intron 2 of 13) intron (NM_201995, intron 2 of 13) 2185 NM_001178031 7536 Hs.502829 NM_004630 ENSG00000168066 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 190.666-3 chr11 19680237 19680499 + 1.66667 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -32469 NM_182964 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 336-3 chr1 166536214 166536571 + 1.66667 NA Intergenic MER4-int|LTR|ERV1 -46353 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 327-10 chr15 81257254 81257602 + 1.66667 NA intron (NM_001352686, intron 2 of 18) L1M6B|LINE|L1 -39542 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 240.334-7 chr8 73670023 73670202 + 1.66667 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 76728 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 335-9 chr2 120252557 120252853 + 1.66667 NA promoter-TSS (NM_002881) promoter-TSS (NM_002881) -147 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 243.334-4 chr12 77582275 77582552 + 1.66667 NA Intergenic Intergenic -248481 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 244.667-15 chr18 66872163 66872529 + 1.66667 NA Intergenic Intergenic -209238 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 269-21 chr4 105548412 105548654 + 1.66667 NA Intergenic MLT1I|LTR|ERVL-MaLR -4087 NM_001242729 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 414.667 chr1 219328529 219329058 + 1.66667 NA Intergenic Intergenic 153824 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 238.334-20 chr7 20960665 20960888 + 1.66667 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 125345 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 399-12 chr6 67051466 67051918 + 1.66667 NA Intergenic L1MA9|LINE|L1 -1003659 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 565.834-2 chr5 64785352 64785860 + 1.66667 NA intron (NM_001297645, intron 5 of 10) intron (NM_001297645, intron 5 of 10) 16676 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 261.334-3 chr13 37918670 37918931 + 1.66667 NA Intergenic Intergenic -48375 NM_003306 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 453-3 chr2 113720082 113721087 + 1.66667 NA TTS (NR_039943) TTS (NR_039943) 784 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 416.168 chr16 7698873 7699270 + 1.66667 NA intron (NM_145893, intron 12 of 13) MER5A|DNA|hAT-Charlie 366226 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 274-46 chrX 153953481 153953772 + 1.66667 NA exon (NM_005334, exon 18 of 26) exon (NM_005334, exon 18 of 26) -8983 NM_002910 5973 Hs.158331 NM_002910 ENSG00000102032 RENBP RBP|RNBP renin binding protein protein-coding 355.834-3 chr11 39160773 39161206 + 1.66667 NA Intergenic Intergenic 512131 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 272.834-8 chr6 11561983 11562212 + 1.66667 NA intron (NM_001100829, intron 1 of 2) intron (NM_001100829, intron 1 of 2) 24348 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 351-7 chr20 11319748 11320262 + 1.66667 NA Intergenic Intergenic -46622 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 445.001 chr1 27669921 27670215 + 1.66667 NA intron (NM_022873, intron 1 of 4) MER21B|LTR|ERVL 2124 NM_022873 2537 Hs.523847 NM_002038 ENSG00000126709 IFI6 6-16|FAM14C|G1P3|IFI-6-16|IFI616 interferon alpha inducible protein 6 protein-coding 271-7 chr12 6613683 6614046 + 1.66667 NA Intergenic Intergenic -6485 NM_001363606 1108 Hs.162233 NM_001273 ENSG00000111642 CHD4 CHD-4|Mi-2b|Mi2-BETA|SIHIWES chromodomain helicase DNA binding protein 4 protein-coding 202-42 chrX 96974750 96974970 + 1.66667 NA intron (NM_007309, intron 17 of 26) intron (NM_007309, intron 17 of 26) 90952 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 367.667-8 chr5 40373821 40374076 + 1.66667 NA Intergenic L1MEd|LINE|L1 -305967 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 306.334-4 chr10 67418497 67418755 + 1.66667 NA intron (NM_001127384, intron 5 of 17) L1MA8|LINE|L1 -15216 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 328 chr1 9770481 9770846 + 1.66667 NA intron (NM_001009566, intron 2 of 18) MIR|SINE|MIR 53863 NM_001302883 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 320.834-3 chr10 69475784 69476086 + 1.66667 NA intron (NM_001351263, intron 1 of 5) intron (NM_001351263, intron 1 of 5) 24468 NM_001351263 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 335.334-2 chr1 152252385 152252749 + 1.66667 NA Intergenic MER89|LTR|ERV1 -28371 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 569.668-2 chr1 192040200 192040737 + 1.66667 NA Intergenic Charlie2a|DNA|hAT-Charlie -117994 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 222.167-24 chr2 173220806 173220961 + 1.66667 NA intron (NM_016653, intron 11 of 19) intron (NM_016653, intron 11 of 19) 61153 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 386-13 chr8 113945125 113945556 + 1.66667 NA Intergenic Intergenic -508401 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 290.834-9 chr4 110956453 110956833 + 1.66667 NA Intergenic Intergenic -95996 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 292.333-12 chr2 133885674 133886013 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR -234092 NM_001371457 371-8 chr20 50756633 50757021 + 1.66667 NA Intergenic Intergenic 25247 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 526.834-2 chr11 77994678 77995280 + 1.66667 NA promoter-TSS (NM_033547) promoter-TSS (NM_033547) -311 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 341.834-5 chr4 48039966 48040378 + 1.66667 NA TTS (NM_207330) TTS (NM_207330) 23400 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 283.334-9 chr2 202956208 202956397 + 1.66667 NA intron (NM_001352678, intron 7 of 13) AluSx|SINE|Alu 44027 NM_001282912 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 282.334-3 chr14 68113573 68113878 + 1.66667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 290133 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 452.667-4 chr6 48430035 48430471 + 1.66667 NA Intergenic Intergenic -361564 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 424.667-4 chr8 82831450 82831854 + 1.66667 NA Intergenic L1M4c|LINE|L1 -80452 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 194.667-55 chr8 62952415 62952547 + 1.66667 NA intron (NR_130764, intron 5 of 6) BLACKJACK|DNA|hAT-Blackjack -25380 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 382.666 chr1 219837516 219837901 + 1.66667 NA Intergenic Intergenic 90943 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 422.5-3 chr12 49762744 49763701 + 1.66667 NA 3' UTR (NM_003217, exon 10 of 10) 3' UTR (NM_003217, exon 10 of 10) 21413 NM_001098576 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 203-27 chr5 20097051 20097250 + 1.66667 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -108950 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 239-26 chr3 190745831 190746058 + 1.66667 NA Intergenic MER44A|DNA|TcMar-Tigger 116750 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 461.167-2 chr1 227447343 227447936 + 1.66667 NA Intergenic Intergenic -115917 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 280.5-20 chr7 92447177 92447580 + 1.66667 NA promoter-TSS (NR_052016) promoter-TSS (NR_052016) -104 NM_021167 57798 Hs.21145 NM_021167 ENSG00000157259 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 340.667-2 chr1 206882502 206882882 + 1.66667 NA Intergenic L1MB7|LINE|L1 -14751 NM_006850 11009 Hs.58831 NM_006850 ENSG00000162892 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 407.834-2 chr11 112074027 112074361 + 1.66667 NA promoter-TSS (NM_001082969) promoter-TSS (NM_001082969) -23 NM_138789 120379 Hs.420662 NM_138789 ENSG00000150773 PIH1D2 - PIH1 domain containing 2 protein-coding 346.667-2 chr1 14408380 14408629 + 1.66667 NA intron (NR_149058, intron 1 of 4) MLT1A|LTR|ERVL-MaLR 11469 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 170.5-34 chr4 48625927 48626126 + 1.66667 NA intron (NM_015030, intron 4 of 63) intron (NM_015030, intron 4 of 63) 135774 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 428.667-6 chr3 34565724 34566066 + 1.66667 NA Intergenic L1M5|LINE|L1 767265 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 389.334-5 chr4 11911742 11912046 + 1.66667 NA Intergenic Intergenic 128716 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 365.833-2 chr11 13438451 13438867 + 1.66667 NA intron (NM_001297741, intron 1 of 7) intron (NM_001297741, intron 1 of 7) 1620 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 482-4 chr14 56340310 56340822 + 1.66667 NA Intergenic Intergenic -173765 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 327.834-4 chr20 55631290 55631532 + 1.66667 NA Intergenic Intergenic -204214 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 506.501-3 chr5 137344952 137345355 + 1.66667 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 154173 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 303.334-2 chr10 57337362 57337555 + 1.66667 NA Intergenic Intergenic -32899 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 459 chr1 226407870 226408401 + 1.66667 NA promoter-TSS (NM_001618) promoter-TSS (NM_001618) -42 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 193.667-28 chr2 124896056 124896392 + 1.66667 NA intron (NM_130773, intron 21 of 23) intron (NM_130773, intron 21 of 23) 870937 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 481.167-5 chr7 113698813 113699304 + 1.66667 NA Intergenic Intergenic 219951 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 401.667-10 chr7 1065912 1066347 + 1.66667 NA intron (NM_001134395, intron 2 of 4) CpG 10759 NM_001303474 115330 Hs.585007 NM_138445 ENSG00000164849 GPR146 PGR8 G protein-coupled receptor 146 protein-coding 267.5-5 chr10 73957352 73957628 + 1.66667 NA Intergenic UCON132b|DNA|hAT-Tip100 -34713 NR_160937 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 454.334-2 chr18 72544427 72544924 + 1.66667 NA promoter-TSS (NM_182511) promoter-TSS (NM_182511) -333 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 239.334-13 chr6 155793123 155793427 + 1.66667 NA Intergenic MER45A|DNA|hAT-Tip100 -153522 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 319.667-4 chr14 77397115 77397432 + 1.66667 NA intron (NM_001113475, intron 5 of 5) L1MD1|LINE|L1 19895 NM_001010860 161394 Hs.421961 NM_001010860 ENSG00000100583 SAMD15 C14orf174|FAM15A sterile alpha motif domain containing 15 protein-coding 450.667-9 chr9 83935428 83936088 + 1.66667 NA Intergenic MER90a|LTR|ERV1 -14214 NM_001271928 55582 Hs.697514 NM_017576 ENSG00000165115 KIF27 - kinesin family member 27 protein-coding 235.667-10 chr14 45316858 45317046 + 1.66667 NA Intergenic Intergenic -63750 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 311.167-2 chr10 32770012 32770302 + 1.66667 NA intron (NM_001321115, intron 29 of 43) L1PBa|LINE|L1 131315 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 278.667-5 chr10 99548988 99549305 + 1.66667 NA Intergenic Intergenic 16204 NM_145285 159296 Hs.243272 NM_145285 ENSG00000119919 NKX2-3 CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3 NK2 homeobox 3 protein-coding 494.001 chr19 17859197 17859763 + 1.66667 NA promoter-TSS (NM_000980) promoter-TSS (NM_000980) -430 NM_000980 6142 Hs.337766 NM_000980 ENSG00000105640 RPL18A L18A ribosomal protein L18a protein-coding 423.5 chr10 132315681 132316126 + 1.66667 NA intron (NM_001318878, intron 1 of 11) L1ME1|LINE|L1 -7953 NM_173575 282974 Hs.469002 NM_173575 ENSG00000165752 STK32C PKE|YANK3 serine/threonine kinase 32C protein-coding 246.333-26 chr2 137011781 137012184 + 1.66667 NA intron (NM_001316349, intron 2 of 27) L2c|LINE|L2 246437 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 400-12 chr8 82746152 82746536 + 1.66667 NA Intergenic Intergenic -165760 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 238-23 chr4 40979145 40979372 + 1.66667 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -122066 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 303-17 chr5 127204650 127204978 + 1.66667 NA Intergenic L1MB1|LINE|L1 -85950 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 252.5-3 chr1 230382158 230382324 + 1.66667 NA intron (NM_001258311, intron 1 of 6) intron (NM_001258311, intron 1 of 6) 44091 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 379.834-3 chr5 33799351 33799650 + 1.66667 NA intron (NM_001324511, intron 2 of 2) intron (NM_001324511, intron 2 of 2) 92490 NM_001324512 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 198.333-2 chr1 75786004 75786225 + 1.66667 NA promoter-TSS (NR_073562) promoter-TSS (NR_073562) -80 NR_073562 5876 Hs.78948 NM_004582 ENSG00000137955 RABGGTB GGTB Rab geranylgeranyltransferase subunit beta protein-coding 252.5-25 chr8 74687556 74687794 + 1.66667 NA intron (NR_033830, intron 2 of 5) L1MA10|LINE|L1 -18018 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 318.334 chr1 4656380 4656685 + 1.66667 NA intron (NM_018836, intron 1 of 5) intron (NM_018836, intron 1 of 5) 1923 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 443.666 chr12 4517706 4518146 + 1.66667 NA intron (NR_144379, intron 7 of 12) intron (NR_144379, intron 7 of 12) 20543 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 328.334-11 chrX 102835719 102835931 + 1.66667 NA intron (NR_146590, intron 3 of 6) intron (NR_146590, intron 3 of 6) 66672 NR_146592 100287765 Hs.556850 NR_038988 LINC00630 - long intergenic non-protein coding RNA 630 ncRNA 242.334-9 chr8 113160701 113161206 + 1.66667 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 216199 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 312.334-5 chr7 109528095 109528492 + 1.66667 NA Intergenic Intergenic 431920 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 170.334-8 chr5 77561519 77561646 + 1.66667 NA Intergenic Intergenic -69266 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 387.001 chr14 37471026 37471288 + 1.66667 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 124092 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 306.834-6 chr21 35004954 35005363 + 1.66667 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) 34268 NR_026812 80215 Hs.672131 NM_025143 RUNX1-IT1 C21orf96 RUNX1 intronic transcript 1 ncRNA 170.667-59 chr9 123558868 123559039 + 1.66667 NA intron (NM_001352968, intron 11 of 18) L2b|LINE|L2 -73331 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 599.001 chr10 62491580 62492406 + 1.66667 NA intron (NM_199451, intron 4 of 7) intron (NM_199451, intron 4 of 7) -28455 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 339.5 chr1 49148009 49148314 + 1.66667 NA intron (NM_001323575, intron 4 of 12) MIRb|SINE|MIR -109250 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 171.667-58 chr8 79481097 79481242 + 1.66667 NA Intergenic L1PA16|LINE|L1 -129948 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 197-30 chr6 79821615 79821837 + 1.66667 NA Intergenic Intergenic -9480 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 274.5-20 chr4 55555262 55555656 + 1.66667 NA Intergenic Intergenic -8550 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 343.666-2 chr5 179177149 179177458 + 1.66667 NA intron (NM_014244, intron 5 of 21) L1MD|LINE|L1 116930 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 260.334-8 chr2 181099760 181099944 + 1.66667 NA Intergenic L1M1|LINE|L1 -23985 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 237.834-2 chr11 77820738 77821033 + 1.66667 NA promoter-TSS (NM_001316960) promoter-TSS (NM_001316960) -51 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 237.334-4 chr14 76383077 76383285 + 1.66667 NA intron (NM_004452, intron 1 of 10) intron (NM_004452, intron 1 of 10) 11834 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 315.001-6 chr5 43861156 43861348 + 1.66667 NA Intergenic MIRb|SINE|MIR -258022 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 199-41 chr5 157068811 157068992 + 1.66667 NA Intergenic AluJb|SINE|Alu -9785 NM_001308156 26762 Hs.129711 NM_012206 ENSG00000113249 HAVCR1 CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 614.5-3 chr12 5806391 5807019 + 1.66667 NA intron (NM_001278596, intron 8 of 25) intron (NM_001278596, intron 8 of 25) 138554 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 475.335 chr11 45772927 45773373 + 1.66667 NA TTS (NR_027134) TTS (NR_027134) 1718 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 LINC02716 DKFZp779M0652 long intergenic non-protein coding RNA 2716 ncRNA 213.667-45 chr8 127659718 127659979 + 1.66667 NA Intergenic Intergenic 74119 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 371.334 chr1 88684038 88684336 + 1.66667 NA promoter-TSS (NM_001320709) promoter-TSS (NM_001320709) 43 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 331.668 chr16 65410242 65410564 + 1.66667 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 165897 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 521.834 chr11 11786586 11787209 + 1.66667 NA Intergenic MIR3|SINE|MIR -3675 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 444.333 chr1 225914674 225915114 + 1.66667 NA Intergenic L1ME4b|LINE|L1 7248 NR_106799 102466270 NR_106799 ENSG00000284519 MIR6741 hsa-mir-6741 microRNA 6741 ncRNA 417.001 chr2 38538303 38538595 + 1.66667 NA Intergenic Intergenic -22709 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 360.5-2 chr16 6017498 6017999 + 1.66667 NA Intergenic Intergenic -1276 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 303.667-15 chr9 90786555 90786872 + 1.66667 NA Intergenic Intergenic -14887 NM_001174168 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 212.667-16 chr17 62827037 62827333 + 1.66667 NA intron (NR_135634, intron 1 of 1) intron (NR_135634, intron 1 of 1) 18683 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 331.833-7 chr5 66246892 66247491 + 1.66667 NA Intergenic Tigger14a|DNA|TcMar-Tigger -37745 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 629.334-2 chr10 117320302 117321018 + 1.66667 NA intron (NM_173791, intron 2 of 4) L1MB8|LINE|L1 54780 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 653.167 chr17 59005675 59006209 + 1.66667 NA intron (NR_148346, intron 22 of 23) MER99|DNA|hAT? 100938 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 240.334-4 chr15 82100466 82100725 + 1.66667 NA Intergenic Intergenic 12001 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 257.5-21 chr3 15601598 15601896 + 1.66667 NA promoter-TSS (NM_001281724) promoter-TSS (NM_001281724) 2 NM_001323582 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 319.667-10 chr5 112407582 112407800 + 1.66667 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 11586 NM_001347887 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 174-11 chr11 96237417 96237553 + 1.66667 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -103953 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 486.834 chr16 75471720 75472263 + 1.66667 NA TTS (NM_021615) TTS (NM_021615) -7254 NM_001304998 124491 Hs.487510 NM_145254 ENSG00000166822 TMEM170A TMEM170 transmembrane protein 170A protein-coding 242.167-17 chr2 162155131 162155494 + 1.66667 NA intron (NR_110255, intron 1 of 3) L1ME4b|LINE|L1 -3065 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 189.667-26 chr2 43459259 43459521 + 1.66667 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 136584 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 530.834-3 chr4 76327209 76327648 + 1.66667 NA intron (NM_001042784, intron 21 of 23) Tigger3c|DNA|TcMar-Tigger 21402 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 275.667-15 chr4 44763045 44763674 + 1.66667 NA Intergenic L1MB4|LINE|L1 -36725 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 269.667-21 chr5 61888744 61889035 + 1.66667 NA Intergenic L1MA4|LINE|L1 -153191 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 204.834 chr12 69959038 69959177 + 1.66667 NA TTS (NM_182530) TTS (NM_182530) 133880 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 236.334 chr10 93542158 93542359 + 1.66667 NA Intergenic MER102a|DNA|hAT-Charlie -24407 NM_181745 338557 Hs.661022 NM_181745 ENSG00000186188 FFAR4 BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 free fatty acid receptor 4 protein-coding 367.001-2 chr12 50088468 50088812 + 1.66667 NA intron (NM_139071, intron 6 of 11) intron (NM_139071, intron 6 of 11) 3298 NM_139071 6602 Hs.79335 NM_003076 ENSG00000066117 SMARCD1 BAF60A|CRACD1|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein-coding 291.001-2 chr18 50769629 50769878 + 1.66667 NA Intergenic L1MA4A|LINE|L1 50263 NM_001127175 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 284.334-6 chr22 25088647 25088874 + 1.66667 NA intron (NM_001145206, intron 4 of 10) L1ME3G|LINE|L1 23932 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 180-52 chr5 114538996 114539364 + 1.66667 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) -36861 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 249.334-10 chrX 114344210 114344401 + 1.66667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -239773 NM_000868 3358 Hs.149037 NM_000868 ENSG00000147246 HTR2C 5-HT1C|5-HT2C|5-HTR2C|5HTR2C|HTR1C 5-hydroxytryptamine receptor 2C protein-coding 335.834 chr10 43293116 43293368 + 1.66667 NA Intergenic Intergenic -26177 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 343.667 chr1 74468988 74469434 + 1.66667 NA 3' UTR (NM_001364665, exon 4 of 4) 3' UTR (NM_001364665, exon 4 of 4) 14229 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 291.333-23 chr8 99878357 99878721 + 1.66667 NA TTS (NM_152564) TTS (NM_152564) 15168 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 336.001 chr19 46537487 46537716 + 1.66667 NA intron (NM_001370550, intron 1 of 2) MIRb|SINE|MIR -41734 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 292.667-2 chr12 85072176 85072365 + 1.66667 NA intron (NM_001079910, intron 10 of 26) L1MC4|LINE|L1 35919 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 218.333-27 chr7 124153013 124153289 + 1.66667 NA Intergenic MARNA|DNA|TcMar-Mariner -120084 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 277.667-22 chr3 124105545 124105750 + 1.66667 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 10940 NM_001322991 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 526.334-2 chr12 117124866 117125466 + 1.66667 NA intron (NR_120464, intron 2 of 2) intron (NR_120464, intron 2 of 2) 25699 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 319.667-3 chr11 71254352 71254667 + 1.66667 NA Intergenic Intergenic -29713 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 215.667 chr1 99938043 99938252 + 1.66667 NA Intergenic Intergenic -31849 NM_001271684 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 345-18 chr4 75995898 75996177 + 1.66667 NA intron (NR_125906, intron 1 of 2) intron (NR_125906, intron 1 of 2) -5075 NM_001288984 55153 Hs.632604 NM_018115 ENSG00000198301 SDAD1 - SDA1 domain containing 1 protein-coding 764.667-5 chr8 137891016 137891689 + 1.66667 NA intron (NR_161374, intron 2 of 7) LTR32|LTR|ERVL 192193 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 329-12 chr6 152955893 152956156 + 1.66667 NA Intergenic L1MB7|LINE|L1 27017 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 199.667-19 chr18 24732121 24732319 + 1.66667 NA intron (NR_134604, intron 2 of 2) MER77B|LTR|ERVL 6439 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 383.667 chr1 20522179 20522611 + 1.66667 NA Intergenic Intergenic -14244 NM_024544 79594 Hs.10101 NM_024544 ENSG00000090432 MUL1 C1orf166|GIDE|MAPL|MULAN|RNF218 mitochondrial E3 ubiquitin protein ligase 1 protein-coding 195.334-4 chr14 64633229 64633365 + 1.66667 NA Intergenic MLT1B|LTR|ERVL-MaLR -71127 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 181.167-25 chr5 39542141 39542372 + 1.66667 NA Intergenic Intergenic 21825 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 259-43 chr8 94881112 94881387 + 1.66667 NA TTS (NR_073444) TTS (NR_073444) 14005 NM_057749 9134 Hs.521693 NM_004702 ENSG00000175305 CCNE2 CYCE2 cyclin E2 protein-coding 238-39 chrX 124388567 124388822 + 1.66667 NA intron (NM_014253, intron 27 of 30) intron (NM_014253, intron 27 of 30) 42412 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 188.167-2 chr1 34887531 34887729 + 1.66667 NA intron (NM_001080418, intron 5 of 11) L4_A_Mam|LINE|RTE-X -27881 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 436.668 chr2 73176853 73177345 + 1.66667 NA Intergenic CpG -25475 NM_001134462 344022 Hs.694384 NM_001134462 ENSG00000214513 NOTO - notochord homeobox protein-coding 289.001 chr11 122796274 122796546 + 1.66667 NA intron (NM_001363365, intron 8 of 13) intron (NM_001363365, intron 8 of 13) -42090 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 293-13 chr2 229716512 229716922 + 1.66667 NA Intergenic Intergenic -2162 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 374.667-9 chr3 79108316 79108583 + 1.66667 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -88990 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 468.667-3 chr8 127496552 127497168 + 1.66667 NA Intergenic Intergenic -14721 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 279-31 chr8 83074892 83075280 + 1.66667 NA Intergenic AluSq2|SINE|Alu 162982 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 407.667-7 chr22 30088140 30088665 + 1.66667 NA intron (NM_001329457, intron 2 of 11) intron (NM_001329457, intron 2 of 11) 7938 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 216.667-56 chrX 119023467 119023673 + 1.66667 NA Intergenic Intergenic 47238 NM_001289109 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 563.334-6 chr9 135343896 135344414 + 1.66667 NA exon (NM_173520, exon 2 of 3) exon (NM_173520, exon 2 of 3) 906 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 193.334 chr1 10505305 10505546 + 1.66667 NA intron (NM_004565, intron 2 of 8) AluJo|SINE|Alu 30475 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 224.334-4 chr2 55177836 55178070 + 1.66667 NA intron (NR_148542, intron 1 of 2) intron (NR_148542, intron 1 of 2) -40122 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 352.834-7 chr3 125252340 125252558 + 1.66667 NA intron (NM_001348434, intron 6 of 7) L1ME3A|LINE|L1 -39684 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 366.5 chr11 46308366 46308699 + 1.66667 NA intron (NM_052854, intron 3 of 11) intron (NM_052854, intron 3 of 11) -24394 NM_201532 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding 400.501-2 chr7 32490586 32490958 + 1.66667 NA promoter-TSS (NM_012322) promoter-TSS (NM_012322) -392 NM_012322 23658 Hs.424908 NM_012322 ENSG00000106355 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 342-10 chr3 20929386 20929694 + 1.66667 NA Intergenic Intergenic -476186 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 323-9 chr16 4691236 4691592 + 1.66667 NA TTS (NM_001142289) TTS (NM_001142289) -2279 NM_001193452 84309 Hs.513315 NM_032349 ENSG00000168101 NUDT16L1 SDOS|TIRR nudix hydrolase 16 like 1 protein-coding 312 chr1 59725715 59726023 + 1.66667 NA intron (NM_001350790, intron 15 of 16) L1MC3|LINE|L1 7427 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 357-17 chr6 44224166 44224443 + 1.66667 NA intron (NM_001078177, intron 1 of 13) intron (NM_001078177, intron 1 of 13) 709 NM_001078175 2030 Hs.25450 NM_004955 ENSG00000112759 SLC29A1 ENT1 solute carrier family 29 member 1 (Augustine blood group) protein-coding 402.501-2 chr5 116037357 116037648 + 1.66667 NA Intergenic Intergenic -13964 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 508.335 chr1 210508826 210509306 + 1.66667 NA intron (NM_001122834, intron 8 of 11) MADE1|DNA|TcMar-Mariner 179700 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 236.333-24 chr4 156294463 156294735 + 1.66667 NA Intergenic Intergenic -340733 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 917.835 chr10 46022782 46023804 + 1.66667 NA intron (NM_001145263, intron 1 of 9) CpG 165 NM_005437 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 186-22 chr19 43608180 43608317 + 1.66667 NA intron (NM_182498, intron 2 of 2) L2b|LINE|L2 -3840 NM_001145641 100170229 Hs.722032 NM_001145641 ENSG00000226763 SRRM5 ZNF576 serine/arginine repetitive matrix 5 protein-coding 276.667-14 chr2 121722523 121722750 + 1.66667 NA intron (NR_037857, intron 3 of 3) Cheshire|DNA|hAT-Charlie 14239 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 331.667-11 chr5 86040766 86040981 + 1.66667 NA Intergenic Intergenic -241571 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 247-14 chr15 62748775 62749337 + 1.66667 NA intron (NM_015059, intron 30 of 55) intron (NM_015059, intron 30 of 55) -74901 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 212.5-24 chr3 97400951 97401117 + 1.66667 NA intron (NM_001080448, intron 5 of 17) L1MA5|LINE|L1 -38573 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 239.167-23 chr21 29836222 29836533 + 1.66667 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 88202 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 229-29 chr8 78777358 78777495 + 1.66667 NA intron (NM_001199886, intron 2 of 4) intron (NM_001199886, intron 2 of 4) 28037 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 497.334-2 chr11 80152745 80153232 + 1.66667 NA Intergenic L3|LINE|CR1 609815 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 282.333-2 chr11 33008441 33008691 + 1.66667 NA Intergenic Intergenic -7312 NM_001077242 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 351-12 chr5 156746609 156746984 + 1.66667 NA intron (NM_001128209, intron 6 of 7) L1ME2|LINE|L1 -103499 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 424.334-2 chr12 14807122 14807623 + 1.66667 NA intron (NM_001013698, intron 1 of 1) intron (NM_001013698, intron 1 of 1) 3702 NM_175874 144608 Hs.659951 NM_175874 ENSG00000182993 C12orf60 - chromosome 12 open reading frame 60 protein-coding 275.667-32 chrX 81489800 81490149 + 1.66667 NA Intergenic L2c|LINE|L2 287872 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 254.167-6 chr11 42770300 42770682 + 1.66667 NA Intergenic Intergenic 498878 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 163.834 chr14 69611235 69611424 + 1.66667 NA promoter-TSS (NM_014734) promoter-TSS (NM_014734) -267 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 443.334-5 chr22 40533943 40534314 + 1.66667 NA promoter-TSS (NM_001318139) promoter-TSS (NM_001318139) -301 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 370.668 chr14 66329380 66329641 + 1.66667 NA Intergenic Intergenic -156861 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 253.167-9 chr17 67737913 67738182 + 1.66667 NA intron (NM_001303272, intron 12 of 16) intron (NM_001303272, intron 12 of 16) -2623 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 394.334-6 chr5 111066737 111067127 + 1.66667 NA Intergenic LTR33|LTR|ERVL -3148 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 346.167-5 chr14 46650277 46650653 + 1.66667 NA TTS (NM_080746) TTS (NM_080746) 1316 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 730.5-2 chr14_GL000225v1_random 67260 68325 + 1.66667 NA NA BSR/Beta|Satellite|Satellite NA NA 473.834-2 chr3 3170988 3171614 + 1.66667 NA intron (NM_001173482, intron 4 of 10) intron (NM_001173482, intron 4 of 10) 8416 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 272.334-3 chr11 36834549 36834760 + 1.66667 NA Intergenic L1PA16|LINE|L1 -236375 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 266-11 chr16 47212625 47212899 + 1.66667 NA intron (NM_030790, intron 14 of 17) L1MD1|LINE|L1 68694 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 247.167-17 chr5 17922434 17922943 + 1.66667 NA intron (NR_134286, intron 6 of 7) intron (NR_134286, intron 6 of 7) 115414 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 256.501 chr12 42744271 42744520 + 1.66667 NA Intergenic Intergenic 52179 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 289.333-25 chr6 50602990 50603329 + 1.66667 NA Intergenic Intergenic -110385 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 288.667-2 chr10 101391040 101391358 + 1.66667 NA intron (NM_003939, intron 1 of 13) intron (NM_003939, intron 1 of 13) 37034 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 300.667-3 chr10 52489131 52489322 + 1.66667 NA Intergenic Intergenic -18693 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 206.667-4 chr1 193982432 193982605 + 1.66667 NA Intergenic L1MEc|LINE|L1 677773 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 262.501-2 chr14 68275477 68275653 + 1.66667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 353222 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 424-8 chr5 96312245 96312814 + 1.66667 NA intron (NR_130776, intron 2 of 4) intron (NR_130776, intron 2 of 4) 119630 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 281-17 chr3 112459785 112460097 + 1.66667 NA Intergenic Intergenic 39531 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 273.333-8 chr19 37802942 37803239 + 1.66667 NA Intergenic Intergenic -14321 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 234.334-4 chr13 79324630 79324925 + 1.66667 NA intron (NM_022118, intron 19 of 20) intron (NM_022118, intron 19 of 20) 81444 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 251.334-9 chr18 25677301 25677585 + 1.66667 NA Intergenic Intergenic -325277 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 560.667-6 chr6 54598548 54599064 + 1.66667 NA Intergenic Intergenic -247965 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 219.167-4 chr11 76084257 76084626 + 1.66667 NA intron (NM_003369, intron 13 of 14) intron (NM_003369, intron 13 of 14) 122061 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 309.333-18 chr6 79075252 79075688 + 1.66667 NA intron (NM_017934, intron 4 of 39) intron (NM_017934, intron 4 of 39) 2784 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 479-9 chr8 131727441 131727993 + 1.66667 NA Intergenic Intergenic -176376 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 190.833-4 chr11 40307892 40308079 + 1.66667 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) -14855 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 634.501-2 chr17 60971150 60971991 + 1.66667 NA intron (NM_001330413, intron 14 of 25) HERVL40-int|LTR|ERVL 293719 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 414.334-3 chr12 9102917 9103287 + 1.66667 NA intron (NM_000014, intron 11 of 35) intron (NM_000014, intron 11 of 35) 13127 NM_001347423 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 345-4 chr14 35757665 35758004 + 1.66667 NA intron (NM_014990, intron 6 of 40) intron (NM_014990, intron 6 of 40) 5097 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 274.167-19 chr8 52227626 52227895 + 1.66667 NA TTS (NR_148196) TTS (NR_148196) 20884 NM_001352869 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 383.167-8 chr8 143829091 143829334 + 1.66667 NA promoter-TSS (NM_001271100) promoter-TSS (NM_001271100) 103 NM_001271097 22827 Hs.521924 NM_014281 ENSG00000179950 PUF60 FIR|RoBPI|SIAHBP1|VRJS poly(U) binding splicing factor 60 protein-coding 336.667-9 chr22 50149064 50149291 + 1.66667 NA intron (NM_001164106, intron 1 of 8) intron (NM_001164106, intron 1 of 8) 2122 NM_001164106 54456 Hs.62880 NM_018995 ENSG00000073146 MOV10L1 CHAMP|DJ402G11.8 Mov10 like RISC complex RNA helicase 1 protein-coding 330.999 chr14 86892326 86892610 + 1.66667 NA Intergenic MLT1H1|LTR|ERVL-MaLR -13310 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 285.667-21 chr8 107033925 107034273 + 1.66667 NA Intergenic L1MA8|LINE|L1 -263855 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 251.667-18 chr19 45427664 45427998 + 1.66667 NA intron (NM_001369412, intron 1 of 9) intron (NM_001369412, intron 1 of 9) -3914 NM_001369415 2067 Hs.435981 NM_001983 ENSG00000012061 ERCC1 COFS4|RAD10|UV20 ERCC excision repair 1, endonuclease non-catalytic subunit protein-coding 182.667-9 chr10 65427638 65427755 + 1.66667 NA Intergenic L1MEf|LINE|L1 -143729 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 342.5-8 chr5 65861820 65862073 + 1.66667 NA Intergenic Intergenic -64608 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 306.001-2 chr12 20377227 20377429 + 1.66667 NA intron (NM_000921, intron 1 of 15) MER33|DNA|hAT-Charlie 8083 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 340.001-2 chr4 107162626 107162902 + 1.66667 NA Intergenic L1MCa|LINE|L1 -126451 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 216.667-23 chr19 28805925 28806061 + 1.66667 NA Intergenic L1PB4|LINE|L1 -78299 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 349.167 chr10 51916730 51916972 + 1.66667 NA intron (NM_001098512, intron 5 of 17) L1MB7|LINE|L1 -217256 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 514.001 chr18 35497636 35498208 + 1.66667 NA promoter-TSS (NM_001308064) promoter-TSS (NM_001308064) 38 NM_194281 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 285.833-10 chr4 181528514 181528808 + 1.66667 NA Intergenic MIR|SINE|MIR -263632 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 469 chr1 77893316 77893644 + 1.66667 NA intron (NM_001172309, intron 1 of 11) intron (NM_001172309, intron 1 of 11) -3941 NR_103535 374987 Hs.632414 NM_199343 ENSG00000235927 NEXN-AS1 C1orf118 NEXN antisense RNA 1 ncRNA 174-20 chr18 11258560 11258739 + 1.66667 NA Intergenic Intergenic -109887 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 542.333-2 chr3 161096743 161097395 + 1.66667 NA intron (NM_001349141, intron 3 of 4) MER5A1|DNA|hAT-Charlie 7663 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 245-38 chr8 128394458 128394640 + 1.66667 NA Intergenic UCON70|Unknown|Unknown 170130 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 360-18 chr8 133487498 133487948 + 1.66667 NA intron (NM_003033, intron 3 of 8) AluSx1|SINE|Alu 84164 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 206.667-40 chr4 68140951 68141142 + 1.66667 NA Intergenic Intergenic -11177 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 1143 chr2 12715394 12717122 + 1.66667 NA promoter-TSS (NR_027303) promoter-TSS (NR_027303) -614 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 234.667-6 chr11 86613994 86614224 + 1.66667 NA intron (NM_001014811, intron 1 of 13) L1PA8A|LINE|L1 58089 NR_147831 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 262.667-26 chr5 97507507 97507756 + 1.66667 NA intron (NR_105028, intron 1 of 3) L1MA4|LINE|L1 2935 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 352.334 chr1 13813497 13814065 + 1.66667 NA intron (NM_012231, intron 8 of 9) intron (NM_012231, intron 8 of 9) 64366 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 172.5-44 chr5 128160611 128160769 + 1.66667 NA intron (NM_001046, intron 16 of 26) intron (NM_001046, intron 16 of 26) 76924 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 203.334 chr11 102226767 102226930 + 1.66667 NA intron (NM_001130145, intron 7 of 8) intron (NM_001130145, intron 7 of 8) -90636 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 233-31 chr7 26830513 26830821 + 1.66667 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 27056 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 219.667-13 chr17 44009456 44009728 + 1.66667 NA TTS (NM_153006) TTS (NM_153006) 4970 NM_153006 162417 Hs.8876 NM_153006 ENSG00000161653 NAGS AGAS|ARGA N-acetylglutamate synthase protein-coding 376.667-10 chr7 111808049 111808434 + 1.66667 NA promoter-TSS (NR_103806) promoter-TSS (NR_103806) -264 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 391.334-5 chr2 66687576 66687988 + 1.66667 NA intron (NR_110156, intron 4 of 5) intron (NR_110156, intron 4 of 5) 15445 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 391.833-8 chr4 40316613 40316925 + 1.66667 NA non-coding (NR_121640, exon 1 of 3) non-coding (NR_121640, exon 1 of 3) 285 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 185.334-5 chr4 59654695 59654859 + 1.66667 NA Intergenic Intergenic 641204 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 340.667-9 chr2 134398526 134398934 + 1.66667 NA intron (NM_001371457, intron 11 of 16) L1MA4A|LINE|L1 144658 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 255.833-18 chr6 99390005 99390295 + 1.66667 NA intron (NM_017421, intron 1 of 6) L1ME4b|LINE|L1 4045 NM_017421 51805 Hs.713623 NM_017421 ENSG00000132423 COQ3 DHHBMT|DHHBMTASE|UG0215E05|bA9819.1 coenzyme Q3, methyltransferase protein-coding 271.667-14 chr19 2819538 2819836 + 1.66667 NA promoter-TSS (NM_001102651) promoter-TSS (NM_001102651) -181 NM_001102651 115196 Hs.307043 NM_152303 ENSG00000172006 ZNF554 - zinc finger protein 554 protein-coding 469.667-6 chr22 30196510 30196897 + 1.66667 NA Intergenic Intergenic -42491 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 208.334-11 chr8 144767396 144767564 + 1.66667 NA Intergenic AluJb|SINE|Alu -11949 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 244.167-7 chr11 18543992 18544302 + 1.66667 NA intron (NM_001040697, intron 9 of 11) intron (NM_001040697, intron 9 of 11) -17205 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 472.501 chr1 84627361 84627703 + 1.66667 NA TTS (NR_027379) TTS (NR_027379) -6501 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 339.167 chr1 94061377 94061800 + 1.66667 NA intron (NM_000350, intron 13 of 49) intron (NM_000350, intron 13 of 49) 59560 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 300-2 chr1 227954066 227954361 + 1.66667 NA Intergenic L1MD2|LINE|L1 -6281 NM_003395 7483 Hs.149504 NM_003395 ENSG00000143816 WNT9A WNT14 Wnt family member 9A protein-coding 404.001 chr5 112063460 112063759 + 1.66667 NA Intergenic LTR68|LTR|ERV1 -86677 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 306.667-4 chr12 108534166 108534473 + 1.66667 NA intron (NM_014706, intron 12 of 18) Charlie1a|DNA|hAT-Charlie 19042 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 440.667 chr11 67683869 67684425 + 1.66667 NA Intergenic L1MC|LINE|L1 -2923 NM_001031615 222 Hs.87539 NM_000695 ENSG00000132746 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family member B2 protein-coding 614.835 chr19 34525733 34526169 + 1.66667 NA Intergenic L1MB1|LINE|L1 19435 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 237.834-5 chr2 216714887 216715089 + 1.66667 NA Intergenic AluSq|SINE|Alu -19439 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 544 chr12 49098213 49098763 + 1.66667 NA intron (NM_018113, intron 15 of 16) MIR|SINE|MIR -3687 NM_021044 50846 Hs.524382 NM_021044 ENSG00000139549 DHH GDXYM|HHG-3|SRXY7 desert hedgehog signaling molecule protein-coding 316.334-6 chr2 117893702 117893902 + 1.66667 NA Intergenic L1MC1|LINE|L1 60071 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 222-12 chr13 22222273 22222487 + 1.66667 NA intron (NR_103810, intron 1 of 1) L3|LINE|CR1 12095 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 215.333-11 chr11 45270603 45270772 + 1.66667 NA intron (NM_001247987, intron 1 of 7) intron (NM_001247987, intron 1 of 7) 15654 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 246.667-27 chr9 96558836 96559002 + 1.66667 NA intron (NR_147239, intron 4 of 14) intron (NR_147239, intron 4 of 14) 7912 NM_001077181 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 343.167-4 chr4 21765960 21766290 + 1.66667 NA intron (NM_147182, intron 1 of 8) MamGypLTR3|LTR|Gypsy -68430 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 281.334-7 chr2 202181615 202182036 + 1.66667 NA intron (NM_001277372, intron 15 of 23) intron (NM_001277372, intron 15 of 23) 56772 NM_001005781 7341 Hs.81424 NM_003352 ENSG00000116030 SUMO1 DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1 small ubiquitin like modifier 1 protein-coding 329.167-13 chr6 67010388 67010598 + 1.66667 NA Intergenic Intergenic -1044858 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 386.334 chr11 113732763 113733081 + 1.66667 NA TTS (NM_004724) TTS (NM_004724) -26549 NR_110047 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 235-2 chr1 115023901 115024419 + 1.66667 NA Intergenic MIR3|SINE|MIR -5664 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 184.667-22 chr16 82218181 82218405 + 1.66667 NA Intergenic Intergenic -48069 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 413.334-6 chr21 25002687 25002948 + 1.66667 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 162267 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 515.334-5 chr7 34812963 34813459 + 1.66667 NA intron (NM_207172, intron 4 of 8) L1ME3G|LINE|L1 21120 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 320.834-9 chr5 151655475 151655766 + 1.66667 NA Intergenic L1ME3B|LINE|L1 -21325 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CLMAT3 CTB-113P19.1|SPARC-AS1 colorectal liver metastasis associated transcript 3 ncRNA 305-7 chr12 26035184 26035510 + 1.66667 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -17217 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 276.834-7 chr6 93678986 93679205 + 1.66667 NA Intergenic Intergenic -24922 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 172-11 chr12 97144392 97144636 + 1.66667 NA Intergenic Intergenic 237048 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 330-15 chr4 70691539 70691821 + 1.66667 NA Intergenic Intergenic 3148 NM_020368 57050 Hs.322901 NM_020368 ENSG00000132467 UTP3 CRL1|CRLZ1|SAS10 UTP3 small subunit processome component protein-coding 219.667-25 chr4 32263825 32264096 + 1.66667 NA Intergenic MIRb|SINE|MIR -87078 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 265.334-4 chr17 63085591 63085878 + 1.66667 NA intron (NM_025185, intron 3 of 25) L1MCa|LINE|L1 119499 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 175-10 chr11 83827542 83827709 + 1.66667 NA intron (NM_001142699, intron 17 of 27) X6B_LINE|LINE|CR1 -145200 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 270.5-10 chr14 70255577 70255876 + 1.66667 NA Intergenic LTR12C|LTR|ERV1 -7925 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 437.167-2 chr17 52009596 52009990 + 1.66667 NA intron (NM_001082533, intron 3 of 9) L1PB1|LINE|L1 148921 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 416.334-4 chr3 170689939 170690326 + 1.66667 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -104057 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 402.333-7 chr8 104353833 104354349 + 1.66667 NA intron (NM_030788, intron 2 of 3) intron (NM_030788, intron 2 of 3) 14265 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 402.334-7 chr8 112088798 112089081 + 1.66667 NA Intergenic Intergenic -554554 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 283.334-10 chr2 205321832 205322049 + 1.66667 NA intron (NM_205863, intron 18 of 21) intron (NM_205863, intron 18 of 21) -360560 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 416.334 chr10 35152431 35152815 + 1.66667 NA intron (NM_001352467, intron 2 of 3) intron (NM_001352467, intron 2 of 3) 14841 NM_183011 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 223.334-4 chr17 19503843 19503986 + 1.66667 NA Intergenic AluSz|SINE|Alu -29940 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 313.667-16 chr9 37219324 37219697 + 1.66667 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 98912 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 466.501 chr17 35652889 35653273 + 1.66667 NA intron (NM_001030006, intron 13 of 21) intron (NM_001030006, intron 13 of 21) 65759 NM_001030006 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 383.001-3 chr8 86810627 86810949 + 1.66667 NA Intergenic (TTATTTT)n|Simple_repeat|Simple_repeat -55627 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 206.667-49 chr7 82155647 82155893 + 1.66667 NA intron (NM_000722, intron 4 of 38) intron (NM_000722, intron 4 of 38) 146593 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 463.167-2 chr2 74876201 74877066 + 1.66667 NA intron (NM_000189, intron 7 of 17) intron (NM_000189, intron 7 of 17) -32498 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 305.334-7 chr14 20088770 20089008 + 1.66667 NA Intergenic Intergenic -28579 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 310.333-5 chr15 25023745 25024078 + 1.66667 NA intron (NR_146177, intron 23 of 147) L1MC4|LINE|L1 -7962 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 241.667-5 chr10 110001761 110001951 + 1.66667 NA intron (NM_001320591, intron 1 of 15) intron (NM_001320591, intron 1 of 15) -4091 NM_001320593 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 306.667-12 chr2 162996490 162996830 + 1.66667 NA Intergenic MLT1B|LTR|ERVL-MaLR -157893 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 277.334-6 chr5 95737301 95737592 + 1.66667 NA intron (NM_014899, intron 3 of 11) intron (NM_014899, intron 3 of 11) -5344 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 193-33 chr6 50173663 50173844 + 1.66667 NA Intergenic L1ME2|LINE|L1 -123824 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 736.667 chr7 42885749 42886414 + 1.66667 NA Intergenic L1MC4|LINE|L1 25762 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 246-17 chr2 154763031 154763239 + 1.66667 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 64440 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 347.501-2 chr3 73622629 73623022 + 1.66667 NA promoter-TSS (NR_046681) promoter-TSS (NR_046681) -743 NR_046681 101927249 Hs.733334 NR_046681 PDZRN3-AS1 - PDZRN3 antisense RNA 1 ncRNA 232.667-36 chr7 30005344 30005555 + 1.66667 NA Intergenic Intergenic -15160 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 360.667 chr1 61013463 61013813 + 1.66667 NA Intergenic Intergenic -42862 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 313.001-4 chr21 15012059 15012334 + 1.66667 NA intron (NM_003489, intron 3 of 3) MER103C|DNA|hAT-Charlie 52804 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 640.668 chr2 9174926 9175715 + 1.66667 NA Intergenic MIRb|SINE|MIR -31445 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 281.001-3 chr6 116421492 116421767 + 1.66667 NA intron (NM_001322937, intron 3 of 6) AluJo|SINE|Alu -39746 NM_001276460 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 470.001 chr14 50630133 50630591 + 1.66667 NA intron (NM_015915, intron 13 of 13) intron (NM_015915, intron 13 of 13) 37944 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 196.667-3 chr1 155906781 155906950 + 1.66667 NA intron (NM_006912, intron 3 of 5) AluJo|SINE|Alu 4053 NM_001256821 6016 Hs.491234 NM_006912 ENSG00000143622 RIT1 NS8|RIBB|RIT|ROC1 Ras like without CAAX 1 protein-coding 311.334-6 chr2 203484188 203484393 + 1.66667 NA intron (NM_001329728, intron 4 of 15) intron (NM_001329728, intron 4 of 15) 51011 NM_203365 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 320.667-17 chr9 27028953 27029338 + 1.66667 NA intron (NM_025103, intron 13 of 19) intron (NM_025103, intron 13 of 19) -23473 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 422.167-5 chr4 165440231 165440657 + 1.66667 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 54202 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 168.334-4 chr18 61088827 61088931 + 1.66667 NA Intergenic Intergenic -244551 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 227.667-42 chr8 124544947 124545133 + 1.66667 NA intron (NM_001311168, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 5917 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 424.666-6 chr5 147026127 147026533 + 1.66667 NA intron (NM_001271900, intron 2 of 10) L1ME1|LINE|L1 29807 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 688.834 chr1 52689991 52690795 + 1.66667 NA intron (NM_023077, intron 2 of 2) HAL1b|LINE|L1 7954 NM_023077 65260 Hs.349905 NM_023077 ENSG00000162377 COA7 C1orf163|RESA1|SCAN3|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 290.167-6 chr14 47675605 47676222 + 1.66667 NA promoter-TSS (NM_001113498) promoter-TSS (NM_001113498) -959 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 190.667-33 chr22 36329546 36329665 + 1.66667 NA intron (NM_002473, intron 3 of 40) intron (NM_002473, intron 3 of 40) -42698 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 281.667-7 chr12 45100651 45100952 + 1.66667 NA Intergenic L2c|LINE|L2 -35390 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 392.667-6 chr2 70277820 70278113 + 1.66667 NA 3' UTR (NM_016297, exon 6 of 6) 3' UTR (NM_016297, exon 6 of 6) 15258 NM_001317167 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 235.333-4 chr14 68174445 68174822 + 1.66667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 351041 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 289.334-3 chr11 5296998 5297298 + 1.66667 NA Intergenic Intergenic 4798 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 310.667-4 chr12 68854031 68854390 + 1.66667 NA 3' UTR (NM_001005502, exon 9 of 9) 3' UTR (NM_001005502, exon 9 of 9) 45186 NM_001145340 4193 Hs.484551 NM_002392 ENSG00000135679 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene protein-coding 362.834-2 chr3 46314206 46314506 + 1.66667 NA Intergenic L1M5|LINE|L1 -39388 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 304-10 chr15 81438138 81438376 + 1.66667 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -64044 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 276.001-2 chr14 58551063 58551245 + 1.66667 NA 3' UTR (NM_001364701, exon 31 of 31) 3' UTR (NM_001364701, exon 31 of 31) -82914 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 217.5-9 chr17 5283661 5283906 + 1.66667 NA intron (NM_001291581, intron 1 of 16) intron (NM_001291581, intron 1 of 16) 1499 NM_001291581 9135 Hs.584784 NM_004703 ENSG00000029725 RABEP1 RAB5EP|RABPT5 rabaptin, RAB GTPase binding effector protein 1 protein-coding 399.501 chr12 106698921 106699533 + 1.66667 NA intron (NM_001206691, intron 8 of 17) L1MEf|LINE|L1 14498 NM_032491 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 242.5-18 chr16 67466039 67466222 + 1.66667 NA intron (NM_004691, intron 1 of 7) intron (NM_004691, intron 1 of 7) 15027 NM_004691 9114 Hs.106876 NM_004691 ENSG00000159720 ATP6V0D1 ATP6D|ATP6DV|P39|VATX|VMA6|VPATPD ATPase H+ transporting V0 subunit d1 protein-coding 405.834-2 chr8 135165173 135165493 + 1.66667 NA Intergenic Intergenic -68798 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 280-12 chr18 6876687 6876928 + 1.66667 NA intron (NM_001010000, intron 9 of 16) intron (NM_001010000, intron 9 of 16) 42322 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 253-10 chr14 21482242 21482527 + 1.66667 NA intron (NM_014828, intron 2 of 8) intron (NM_014828, intron 2 of 8) 5189 NM_014828 9878 Hs.555910 NM_014828 ENSG00000092203 TOX4 C14orf92|KIAA0737|LCP1|MIG7 TOX high mobility group box family member 4 protein-coding 372.167-2 chr17 45297843 45298118 + 1.66667 NA intron (NM_003954, intron 1 of 15) AluSx|SINE|Alu 19040 NM_003954 9020 Hs.404183 NM_003954 ENSG00000006062 MAP3K14 FTDCR1B|HS|HSNIK|NIK mitogen-activated protein kinase kinase kinase 14 protein-coding 506.833-2 chr2 158010453 158011188 + 1.66667 NA intron (NM_001135098, intron 1 of 8) AluSz6|SINE|Alu 15641 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 311-17 chr6 46099664 46100180 + 1.66667 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) -19574 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 447.667-9 chr7 36701971 36702271 + 1.66667 NA intron (NM_001637, intron 1 of 20) L1M4a1|LINE|L1 22373 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 239-2 chr1 165476986 165477353 + 1.66667 NA intron (NR_026744, intron 6 of 6) LTR53|LTR|ERVL -31814 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 379.334-2 chr6 93572521 93572766 + 1.66667 NA Intergenic Intergenic -131374 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 439 chr15 98583376 98583676 + 1.66667 NA Intergenic Intergenic -65013 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 322.833 chr1 209250092 209250405 + 1.66667 NA Intergenic Intergenic -75208 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 259-45 chr9 35798398 35798625 + 1.66667 NA intron (NM_003995, intron 2 of 21) intron (NM_003995, intron 2 of 21) 6102 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 289.167-14 chr5 25314168 25314428 + 1.66667 NA Intergenic Intergenic 123345 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 213.5-22 chr4 99047663 99047948 + 1.66667 NA intron (NM_015143, intron 8 of 10) intron (NM_015143, intron 8 of 10) 40983 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 289-17 chr22 19419442 19419779 + 1.66667 NA intron (NM_003325, intron 1 of 24) L2a|LINE|L2 12123 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 186.667-63 chr8 63254660 63254856 + 1.66667 NA Intergenic Intergenic 85755 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 320.834-4 chr13 95660984 95661222 + 1.66667 NA Intergenic Intergenic 15822 NR_132117 100289274 Hs.594844 NR_132117 ENSG00000247400 DNAJC3-DT DNAJC3-AS1 DNAJC3 divergent transcript ncRNA 358-11 chr5 130107698 130108068 + 1.66667 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 203418 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 209.167-11 chr13 25996110 25996335 + 1.66667 NA intron (NM_016529, intron 35 of 36) L1MD1|LINE|L1 54838 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 315.333-6 chr12 27424485 27424832 + 1.66667 NA 3' UTR (NM_020183, exon 17 of 17) 3' UTR (NM_020183, exon 17 of 17) 21976 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 240.167-13 chr20 31357937 31358375 + 1.66667 NA Intergenic L1MA6|LINE|L1 -10445 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 209.667-42 chr7 27059205 27059357 + 1.66667 NA Intergenic Intergenic 36719 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 278.334-9 chr4 71441834 71442058 + 1.66667 NA intron (NM_003759, intron 5 of 22) intron (NM_003759, intron 5 of 22) 102893 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 184.166-3 chr4 161231617 161231896 + 1.66667 NA Intergenic Intergenic -790977 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 327.001-2 chr4 84419193 84419471 + 1.66667 NA Intergenic Intergenic 78902 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 311.667-13 chr2 156988552 156988912 + 1.66667 NA Intergenic Intergenic -268973 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 302.334-2 chr10 81632064 81632387 + 1.66667 NA Intergenic Intergenic -242969 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 198.333-15 chr11 114354238 114354449 + 1.66667 NA Intergenic MLT1L|LTR|ERVL-MaLR 25696 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 173-34 chr5 128550459 128550593 + 1.66667 NA Intergenic L1MC4|LINE|L1 -12281 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 218-5 chr10 59998712 59998866 + 1.66667 NA Intergenic LOR1b|LTR|ERV1 -37876 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 387-10 chr2 34567904 34568535 + 1.66667 NA Intergenic Intergenic -109338 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 322.667-20 chr3 162175477 162175912 + 1.66667 NA Intergenic Intergenic 678886 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 423.667 chr11 20443775 20444184 + 1.66667 NA intron (NM_005788, intron 10 of 15) intron (NM_005788, intron 10 of 15) 56263 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 422-2 chr10 103712717 103713351 + 1.66667 NA intron (NM_014631, intron 5 of 13) MIRb|SINE|MIR -33745 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 224.5-16 chr18 9150387 9150661 + 1.66667 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 12961 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 452.001-2 chr18 50203866 50204227 + 1.66667 NA Intergenic Intergenic -8899 NM_001080467 4645 Hs.720076 NM_001080467 ENSG00000167306 MYO5B - myosin VB protein-coding 485-10 chr8 29176962 29177385 + 1.66667 NA intron (NM_015254, intron 9 of 39) MER20|DNA|hAT-Charlie 85897 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 386.334-2 chr16 65408765 65409289 + 1.66667 NA intron (NR_027755, intron 2 of 8) MIR3|SINE|MIR 167273 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 420-2 chr11 68675480 68675855 + 1.66667 NA Intergenic AluSx1|SINE|Alu -8877 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 367-25 chr7 140810882 140811207 + 1.66667 NA intron (NR_148928, intron 3 of 17) Tigger17a|DNA|TcMar-Tigger 113885 NM_001354609 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 353.334-5 chr2 4199344 4199604 + 1.66667 NA Intergenic Intergenic 225313 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 380.834-4 chr4 60118513 60118873 + 1.66667 NA Intergenic Intergenic -803926 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 325.334-8 chr8 78547037 78547428 + 1.66667 NA intron (NR_125389, intron 2 of 2) AluSc|SINE|Alu 11271 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 264.5-6 chr14 92124414 92124808 + 1.66667 NA intron (NM_001322272, intron 1 of 15) intron (NM_001322272, intron 1 of 15) 2642 NM_001322272 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 270.834-5 chr2 53076572 53076822 + 1.66667 NA Intergenic MER77|LTR|ERVL -374082 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 321.334-5 chrX 96343714 96343970 + 1.66667 NA Intergenic Intergenic -5940 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 349.167-6 chr18 72131025 72131385 + 1.66667 NA Intergenic Intergenic -348979 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 231.333-6 chr1 88983999 88984193 + 1.66667 NA intron (NM_019610, intron 1 of 1) intron (NM_019610, intron 1 of 1) 8533 NM_001162536 494115 Hs.481898 NM_019610 ENSG00000213516 RBMXL1 RBM1 RBMX like 1 protein-coding 349.667-8 chr6 105484570 105484835 + 1.66667 NA Intergenic Intergenic -81620 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 240.667-23 chr2 105103230 105103382 + 1.66667 NA promoter-TSS (NR_110227) promoter-TSS (NR_110227) -362 NR_110227 101927492 Hs.469537 NR_110227 ENSG00000231851 UTAT33 - uncharacterized LOC101927492 ncRNA 593-2 chr2 136423311 136423888 + 1.66667 NA Intergenic CpG -305444 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 373.001-2 chr17 45019410 45019662 + 1.66667 NA Intergenic CpG 32096 NM_001128631 79877 Hs.463148 NM_024819 ENSG00000172992 DCAKD - dephospho-CoA kinase domain containing protein-coding 261.167-4 chr12 110934378 110934740 + 1.66667 NA Intergenic Intergenic -2043 NR_036513 100131138 Hs.152129 NR_036513 ENSG00000185847 LINC01405 - long intergenic non-protein coding RNA 1405 ncRNA 945.501 chr15 98647322 98648437 + 1.66667 NA promoter-TSS (NM_001291858) promoter-TSS (NM_001291858) -660 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 225.834-4 chr11 43214044 43214204 + 1.66667 NA Intergenic Intergenic 55245 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 395.999-2 chr4 59123254 59123604 + 1.66667 NA Intergenic Intergenic 109856 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 217.667-11 chr11 13551428 13551730 + 1.66667 NA Intergenic MER74B|LTR|ERVL -55404 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 250.667-12 chr16 48987740 48987988 + 1.66667 NA Intergenic L1ME1|LINE|L1 293974 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 462.5-4 chr2 60152346 60152894 + 1.66667 NA Intergenic Intergenic 230416 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 212.833 chr1 7808423 7808643 + 1.66667 NA intron (NM_001289861, intron 10 of 22) intron (NM_001289861, intron 10 of 22) 24104 NM_001289862 8863 Hs.162200 NM_016831 ENSG00000049246 PER3 FASPS3|GIG13 period circadian regulator 3 protein-coding 296.667-17 chr4 98252209 98252475 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR -9042 NM_001100429 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 308.167-15 chr6 145634844 145635167 + 1.66667 NA TTS (NM_001368130) TTS (NM_001368130) 51872 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 255-8 chr10 52574499 52574804 + 1.66667 NA intron (NR_155748, intron 1 of 2) A-rich|Low_complexity|Low_complexity -104118 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 510.334 chr21 23613321 23613853 + 1.66667 NA Intergenic ERVL-B4-int|LTR|ERVL -228752 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 171.667-14 chr12 120292970 120293103 + 1.66667 NA TTS (NR_003925) TTS (NR_003925) 201 NR_003925 26835 NR_003925 ENSG00000200795 RNU4-1 RNU4A|RNU4B2|U4|U4BL RNA, U4 small nuclear 1 snRNA 511.668 chr1 173429594 173430054 + 1.66667 NA intron (NR_125960, intron 1 of 1) intron (NR_125960, intron 1 of 1) 31538 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 345.667-13 chr8 82041726 82041996 + 1.66667 NA Intergenic L2b|LINE|L2 -199575 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 254.667-6 chr11 84793842 84794161 + 1.66667 NA intron (NM_001351274, intron 5 of 26) L1MA2|LINE|L1 -73059 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 216.5-27 chr2 185004016 185004235 + 1.66667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 162947 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 327.666 chr2 48819348 48819714 + 1.66667 NA Intergenic Intergenic -63807 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 229.334-11 chr7 114166836 114167043 + 1.66667 NA intron (NR_033766, intron 1 of 19) L1MC2|LINE|L1 80612 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 230.5-32 chr6 23892945 23893350 + 1.66667 NA Intergenic Intergenic -233068 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 194.334-3 chr15 76623887 76624100 + 1.66667 NA intron (NR_148227, intron 21 of 32) L1P4|LINE|L1 37346 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 198.5-32 chr3 185222363 185222671 + 1.66667 NA intron (NM_001966, intron 4 of 6) Charlie1b|DNA|hAT-Charlie 30755 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 263.333-16 chr4 72180698 72180965 + 1.66667 NA Intergenic Intergenic 141699 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 435.667 chr11 125871628 125872014 + 1.66667 NA Intergenic HERVIP10F-int|LTR|ERV1 -11793 NM_145014 219844 Hs.98133 NM_145014 ENSG00000198331 HYLS1 HLS HYLS1 centriolar and ciliogenesis associated protein-coding 321.834 chr11 10351491 10351767 + 1.66667 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) 43316 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 510-3 chr17 33038483 33039088 + 1.66667 NA intron (NM_183377, intron 3 of 9) intron (NM_183377, intron 3 of 9) 45934 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 169.333-49 chr4 106288785 106288957 + 1.66667 NA intron (NM_001290768, intron 3 of 26) Tigger4b|DNA|TcMar-Tigger -26739 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 323.166-7 chr7 138738838 138739220 + 1.66667 NA intron (NM_130840, intron 14 of 20) intron (NM_130840, intron 14 of 20) 35008 NM_130841 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 417.334-4 chr8 112112003 112112295 + 1.66667 NA Intergenic Intergenic -531344 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 352.001-2 chr20 22436242 22436543 + 1.66667 NA Intergenic Zaphod2|DNA|hAT-Tip100 -15749 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 375.834 chr1 212288182 212288449 + 1.66667 NA intron (NM_006243, intron 1 of 12) AluSq2|SINE|Alu 2905 NM_006243 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 230-29 chr3 84295839 84296100 + 1.66667 NA Intergenic L1M5|LINE|L1 573606 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 870.001 chr6 106339046 106340367 + 1.66667 NA Intergenic L2c|LINE|L2 -13886 NM_001286107 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 283-7 chr17 62790483 62790713 + 1.66667 NA intron (NM_001288780, intron 3 of 10) intron (NM_001288780, intron 3 of 10) 16042 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 316-2 chr12 47378687 47378926 + 1.66667 NA Intergenic Intergenic -14537 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 185-16 chr12 14239564 14239709 + 1.66667 NA Intergenic MER20|DNA|hAT-Charlie -125996 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 577.5 chr11 69088816 69089311 + 1.66667 NA 3' UTR (NM_139075, exon 25 of 25) 3' UTR (NM_139075, exon 25 of 25) 5887 NR_036122 100422846 NR_036122 ENSG00000265539 MIR3164 - microRNA 3164 ncRNA 263.834-3 chr18 30480279 30480507 + 1.66667 NA Intergenic Intergenic 181483 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 324.333-8 chr6 87483988 87484401 + 1.66667 NA intron (NM_001168398, intron 2 of 6) HERVIP10FH-int|LTR|ERV1 11220 NM_006416 10559 Hs.423163 NM_006416 ENSG00000164414 SLC35A1 CDG2F|CMPST|CST|hCST solute carrier family 35 member A1 protein-coding 1006.5-2 chr12 82358056 82359497 + 1.66667 NA promoter-TSS (NM_014167) promoter-TSS (NM_014167) 29 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 346.667-10 chr2 150092362 150092650 + 1.66667 NA Intergenic L1MA8|LINE|L1 164501 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 396.167 chr1 55893789 55894325 + 1.66667 NA Intergenic Intergenic 50906 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 339.167-12 chr4 142847471 142847796 + 1.66667 NA Intergenic Intergenic -1098 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 203.333-39 chr3 99951569 99951819 + 1.66667 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 12704 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 269-34 chr9 7694241 7694548 + 1.66667 NA Intergenic L2a|LINE|L2 105384 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 408.5-6 chr9 115591323 115592125 + 1.66667 NA Intergenic Intergenic 152515 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 285.334-2 chr16 64021087 64021422 + 1.66667 NA Intergenic L1MC4|LINE|L1 1100809 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 262.001-2 chr3 125314557 125314742 + 1.66667 NA intron (NM_001348426, intron 2 of 7) intron (NM_001348426, intron 2 of 7) 42631 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 182.834-6 chr4 108866037 108866159 + 1.66667 NA intron (NM_198721, intron 19 of 36) L2a|LINE|L2 -103045 NM_001146590 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 230-15 chr13 113812440 113812636 + 1.66667 NA TTS (NM_001348663) TTS (NM_001348663) -3072 NR_044995 650669 Hs.369201 NM_001039799 GAS6-AS1 - GAS6 antisense RNA 1 ncRNA 490.833-2 chr5 151047458 151048056 + 1.66667 NA intron (NM_001258454, intron 8 of 17) intron (NM_001258454, intron 8 of 17) 17374 NM_001258455 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 250-38 chrX 38592409 38592614 + 1.66667 NA intron (NM_004615, intron 1 of 7) L1MEc|LINE|L1 31033 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 835.167-3 chr9 135499890 135500671 + 1.66667 NA promoter-TSS (NM_016034) promoter-TSS (NM_016034) 315 NM_001371401 287.667-9 chr14 64643871 64644219 + 1.66667 NA Intergenic L1ME3A|LINE|L1 -60379 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 302.334-7 chr17 74648205 74648611 + 1.66667 NA Intergenic Intergenic -22723 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 316-17 chrX 41134047 41134380 + 1.66667 NA intron (NM_001039591, intron 4 of 44) intron (NM_001039591, intron 4 of 44) 48768 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 226.667-19 chr2 30864345 30864567 + 1.66667 NA Intergenic Intergenic -57010 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 246.667-19 chr5 116948670 116948901 + 1.66667 NA Intergenic L1M6|LINE|L1 -186576 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 275 chr1 119663306 119663787 + 1.66667 NA Intergenic AluJr|SINE|Alu -15280 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 218.667-9 chr15 42704333 42704599 + 1.66667 NA intron (NM_020759, intron 26 of 32) L1M1|LINE|L1 32662 NM_138477 146059 Hs.599232 NM_138477 ENSG00000140326 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 256.001-4 chrX 94563928 94564257 + 1.66667 NA Intergenic L1M1|LINE|L1 499134 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 210-29 chr3 10917107 10917296 + 1.66667 NA intron (NM_014229, intron 7 of 13) L3|LINE|CR1 -75533 NM_001348252 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 278.5-20 chr7 27550738 27551099 + 1.66667 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -65056 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 352.334-5 chr4 78624215 78624503 + 1.66667 NA Intergenic LTR67B|LTR|ERVL -21635 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 209.167-6 chr10 106510204 106510336 + 1.66667 NA Intergenic L4_C_Mam|LINE|RTE-X 370105 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 271.667-18 chr4 22690346 22690565 + 1.66667 NA Intergenic Charlie1b|DNA|hAT-Charlie -2459 NM_001128432 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 329-13 chrX 80845364 80845708 + 1.66667 NA Intergenic Intergenic -35659 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 397.834-2 chr4 107757670 107758374 + 1.66667 NA Intergenic Intergenic -37788 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 216.834-4 chr17 48615918 48616137 + 1.66667 NA promoter-TSS (NM_024016) promoter-TSS (NM_024016) -735 NM_024016 3218 Hs.514292 NM_024016 ENSG00000120068 HOXB8 HOX2|HOX2D|Hox-2.4 homeobox B8 protein-coding 313.667-13 chr5 144189847 144190137 + 1.66667 NA intron (NM_020768, intron 2 of 3) intron (NM_020768, intron 2 of 3) -15399 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 177.834-2 chr2 64334914 64335306 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -5649 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 182-42 chr6 38257851 38257992 + 1.66667 NA intron (NM_052893, intron 9 of 11) L1ME3|LINE|L1 -223675 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 352.5-9 chr2 60536273 60536665 + 1.66667 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 17029 NM_001365609 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 176.167-19 chr16 27203763 27203941 + 1.66667 NA promoter-TSS (NM_001145348) promoter-TSS (NM_001145348) -123 NM_001145348 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 183-10 chr11 39248765 39248937 + 1.66667 NA Intergenic Intergenic 599993 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 227.667-38 chr6 132393098 132393254 + 1.66667 NA intron (NM_015529, intron 1 of 11) intron (NM_015529, intron 1 of 11) 8299 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 368.667-7 chr17 79636646 79637100 + 1.66667 NA Intergenic L1MA9|LINE|L1 -25822 NM_001350451 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 188 chr1 43934908 43935144 + 1.66667 NA intron (NM_057091, intron 2 of 4) intron (NM_057091, intron 2 of 4) 1225 NM_001136215 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 472.5-6 chr22 38353087 38353594 + 1.66667 NA intron (NR_002821, intron 4 of 4) intron (NR_002821, intron 4 of 4) -35256 NM_001894 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIe|CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 279.667-6 chr13 45863410 45863699 + 1.66667 NA Intergenic Intergenic -11801 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 202.333-13 chr12 104280878 104281245 + 1.66667 NA intron (NM_001093771, intron 3 of 16) L2a|LINE|L2 -5971 NM_182742 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 308.333-20 chr7 2681088 2681321 + 1.66667 NA intron (NM_133463, intron 1 of 6) intron (NM_133463, intron 1 of 6) 1682 NM_133463 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 299.501-3 chr2 57890611 57891299 + 1.66667 NA Intergenic Intergenic -16696 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 266.333-7 chr11 84560729 84561064 + 1.66667 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 160046 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 349.667-9 chr7 3592532 3592884 + 1.66667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 291456 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 200.666-6 chr18 75516436 75516579 + 1.66667 NA Intergenic L2c|LINE|L2 -88804 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 206.334-4 chr3 134675873 134676087 + 1.66667 NA Intergenic L1MB7|LINE|L1 -24958 NM_001366277 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 204-38 chr7 130416007 130416198 + 1.66667 NA intron (NM_001257159, intron 2 of 8) intron (NM_001257159, intron 2 of 8) 24914 NR_046443 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 178.833-40 chr8 39038308 39038679 + 1.66667 NA intron (NR_027638, intron 11 of 20) L2a|LINE|L2 -19808 NR_145988 109616979 NR_145736 ENSG00000207199 SNORD38D - small nucleolar RNA, C/D box 38D snoRNA 311.667-23 chrX 97056333 97056647 + 1.66667 NA intron (NM_007309, intron 17 of 26) intron (NM_007309, intron 17 of 26) 172582 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 330.001-4 chr9 72811365 72811576 + 1.66667 NA intron (NM_138691, intron 18 of 23) intron (NM_138691, intron 18 of 23) 62639 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 242.501 chr2 7886012 7886257 + 1.66667 NA TTS (NR_110256) TTS (NR_110256) 13521 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 462.833-3 chr16 68945135 68945639 + 1.66667 NA intron (NM_024562, intron 14 of 17) MER65C|LTR|ERV1 101856 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 211.666-2 chr12 120798563 120798873 + 1.66667 NA intron (NM_139015, intron 2 of 10) L4_A_Mam|LINE|RTE-X 72892 NM_001302554 35 Hs.507076 NM_000017 ENSG00000122971 ACADS ACAD3|SCAD acyl-CoA dehydrogenase short chain protein-coding 269.5-6 chr11 94724784 94725020 + 1.66667 NA intron (NR_135096, intron 1 of 6) intron (NR_135096, intron 1 of 6) 15453 NR_135096 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 369.667-5 chr7 7808370 7808814 + 1.66667 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -89985 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 591.334-2 chr2 215002321 215002946 + 1.66667 NA intron (NR_103740, intron 21 of 54) intron (NR_103740, intron 21 of 54) 29453 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 265.333-17 chr6 55654636 55654957 + 1.66667 NA Intergenic L2|LINE|L2 -75582 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 253.666-3 chr7 87763230 87763410 + 1.66667 NA intron (NM_138290, intron 7 of 11) L1MEd|LINE|L1 -49997 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 246-35 chrX 98284505 98284709 + 1.66667 NA Intergenic Intergenic -720072 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 267.333-21 chr5 81085167 81085520 + 1.66667 NA intron (NM_006909, intron 7 of 26) intron (NM_006909, intron 7 of 26) -124436 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 502.834-4 chr3 122497080 122497650 + 1.66667 NA intron (NR_026698, intron 1 of 14) L1MB8|LINE|L1 17574 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 183.167-37 chr7 94658442 94658629 + 1.66667 NA intron (NM_001172437, intron 1 of 1) intron (NM_001172437, intron 1 of 1) 2165 NM_001184962 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 410.167-6 chr3 156025186 156025708 + 1.66667 NA Intergenic Intergenic -95101 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 370-4 chr16 84075752 84076174 + 1.66667 NA intron (NM_003791, intron 11 of 22) intron (NM_003791, intron 11 of 22) -33806 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 285.5-13 chr19 9435311 9435606 + 1.66667 NA 5' UTR (NM_001271314, exon 1 of 11) 5' UTR (NM_001271314, exon 1 of 11) 115 NM_001370399 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 331.001-2 chr11 73287764 73288079 + 1.66667 NA intron (NM_001277207, intron 2 of 2) intron (NM_001277207, intron 2 of 2) 15779 NM_001277208 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 411.334-2 chr2 212524315 212524692 + 1.66667 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 14125 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 269.5-5 chr10 127243514 127243942 + 1.66667 NA intron (NM_001290223, intron 27 of 51) intron (NM_001290223, intron 27 of 51) -47137 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 377.167-7 chr5 116574821 116575376 + 1.66667 NA promoter-TSS (NM_020796) promoter-TSS (NM_020796) -275 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 353.834-3 chr16 61728826 61729335 + 1.66667 NA intron (NM_001796, intron 8 of 11) MIR|SINE|MIR 307358 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 216-49 chr9 72674728 72675101 + 1.66667 NA intron (NM_138691, intron 5 of 23) intron (NM_138691, intron 5 of 23) 153113 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 702.667 chr2 202870092 202871227 + 1.66667 NA intron (NM_138468, intron 1 of 13) intron (NM_138468, intron 1 of 13) 813 NM_001288623 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 223-18 chr2 26083129 26083271 + 1.66667 NA intron (NM_016131, intron 1 of 5) L1MEc|LINE|L1 49116 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 297.667-9 chr13 79351277 79351555 + 1.66667 NA intron (NM_022118, intron 13 of 20) intron (NM_022118, intron 13 of 20) 54805 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 481-3 chr5 68648384 68648894 + 1.66667 NA Intergenic Intergenic 356062 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 268.334-5 chr18 72701272 72701451 + 1.66667 NA Intergenic Intergenic 152021 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 300.667-15 chrX 51909646 51909852 + 1.66667 NA Intergenic L1MB2|LINE|L1 16126 NM_001005333 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 201-10 chr15 71035005 71035219 + 1.66667 NA intron (NM_017691, intron 14 of 15) L1ME4a|LINE|L1 -106337 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 332.667 chr1 206461714 206462094 + 1.66667 NA 3' UTR (NM_001170637, exon 22 of 22) 3' UTR (NM_001170637, exon 22 of 22) -8572 NM_014002 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of nuclear factor kappa B kinase subunit epsilon protein-coding 218.334-11 chr8 56269340 56269578 + 1.66667 NA Intergenic L1ME4b|LINE|L1 51317 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 258.167-3 chr10 51562211 51562391 + 1.66667 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 137294 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 172.5-56 chr8 115166407 115166529 + 1.66667 NA Intergenic L1MB3|LINE|L1 501545 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 259.001-3 chr11 113209897 113210199 + 1.66667 NA intron (NM_181351, intron 7 of 18) L2b|LINE|L2 63853 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 295.834-3 chr14 30177144 30177559 + 1.66667 NA Intergenic Intergenic -249504 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 320.001-2 chr5 175871652 175871859 + 1.66667 NA intron (NM_001008220, intron 1 of 3) CpG 177 NM_001008220 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 266.667-12 chr20 184511 184810 + 1.66667 NA Intergenic L1PA16|LINE|L1 5051 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 350.501 chr1 218334296 218334552 + 1.66667 NA 3' UTR (NM_016052, exon 5 of 5) 3' UTR (NM_016052, exon 5 of 5) -10860 NM_001135599 7042 Hs.133379 NM_003238 ENSG00000092969 TGFB2 G-TSF|LDS4|TGF-beta2 transforming growth factor beta 2 protein-coding 451.834-4 chr8 42140388 42141484 + 1.66667 NA Intergenic Intergenic -12010 NM_001134296 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 380.334-2 chr14 69612751 69613182 + 1.66667 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 1370 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 831.668 chr4 124718239 124718962 + 1.66667 NA Intergenic Intergenic -5868 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 470.5 chr1 220947382 220948037 + 1.66667 NA Intergenic L1ME3A|LINE|L1 -67569 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 188.5-13 chr12 98998717 98998920 + 1.66667 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) -94541 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 545.334-2 chr20 35994926 35995516 + 1.66667 NA intron (NM_001365709, intron 8 of 11) intron (NM_001365709, intron 8 of 11) 26631 NM_001304367 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 468.999 chr5 145680112 145680636 + 1.66667 NA Intergenic Intergenic 154968 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 164.167-29 chr20 49484276 49484418 + 1.66667 NA Intergenic CpG -1679 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 291.5-7 chr11 123247411 123247792 + 1.66667 NA Intergenic Intergenic -52353 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 595.834 chr11 111478959 111479808 + 1.66667 NA intron (NM_017589, intron 5 of 5) AluJo|SINE|Alu -31219 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 250.667-25 chr22 40953352 40953525 + 1.66667 NA intron (NM_014248, intron 1 of 4) intron (NM_014248, intron 1 of 4) 2060 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 329.501-2 chr19 7869368 7869611 + 1.66667 NA exon (NM_001190467, exon 6 of 6) exon (NM_001190467, exon 6 of 6) 4901 NM_001190467 80164 Hs.288540 NM_001080403 ENSG00000183248 PRR36 - proline rich 36 protein-coding 518.667-2 chr6 20400547 20401011 + 1.66667 NA Intergenic Intergenic -1100 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 170-28 chr2 18777202 18777456 + 1.66667 NA Intergenic Intergenic -187749 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 304.001-2 chrX 39770180 39770362 + 1.66667 NA Intergenic AluJb|SINE|Alu -67290 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 221.667-31 chr3 58479161 58479335 + 1.66667 NA Intergenic MSTB1|LTR|ERVL-MaLR -12848 NM_001128214 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 308.334-5 chr7 36386915 36387180 + 1.66667 NA intron (NM_001100425, intron 1 of 6) L1ME3C|LINE|L1 -2815 NM_018685 54443 Hs.62180 NM_018685 ENSG00000011426 ANLN FSGS8|Scraps|scra anillin actin binding protein protein-coding 475-3 chr6 64174332 64174791 + 1.66667 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 367725 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 290.834-8 chr3 115785279 115785795 + 1.66667 NA Intergenic Intergenic 119589 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 441.167-3 chr2 118059841 118060271 + 1.66667 NA Intergenic Tigger20a|DNA|TcMar-Tigger -28362 NM_001321331 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 421-10 chr9 22455835 22456453 + 1.66667 NA TTS (NM_022160) TTS (NM_022160) 9320 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 351-8 chr3 46558226 46558657 + 1.66667 NA intron (NR_073385, intron 2 of 2) L1MEf|LINE|L1 1043 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 225-26 chr3 112990302 112990490 + 1.66667 NA promoter-TSS (NM_138485) promoter-TSS (NM_138485) -557 NM_138485 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 459.333 chr12 126719453 126719775 + 1.66667 NA Intergenic Intergenic -17393 NR_038256 100507206 Hs.662298 NR_038256 LINC00943 - long intergenic non-protein coding RNA 943 ncRNA 233.667-24 chr5 30163039 30163311 + 1.66667 NA Intergenic LTR1F|LTR|ERV1 282615 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 280.834-5 chr4 169566556 169566819 + 1.66667 NA intron (NM_001199400, intron 11 of 32) intron (NM_001199400, intron 11 of 32) 45896 NM_001199399 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 422.334-3 chr4 99164037 99164488 + 1.66667 NA intron (NR_037884, intron 3 of 9) HERV16-int|LTR|ERVL -2615 NR_028270 359806 Hs.537400 NR_028270 PCNAP1 p1PCNA proliferating cell nuclear antigen pseudogene 1 pseudo 270.833-10 chr3 163234242 163234512 + 1.66667 NA intron (NR_033945, intron 2 of 6) MLT1J1|LTR|ERVL-MaLR 68924 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 567.668 chr6 120538451 120538841 + 1.66667 NA Intergenic Intergenic 523467 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 175.167-44 chr9 83954103 83954223 + 1.66667 NA intron (NM_001317997, intron 3 of 4) AluSx|SINE|Alu 2579 NM_032307 84267 Hs.208914 NM_032307 ENSG00000165118 C9orf64 - chromosome 9 open reading frame 64 protein-coding 256.667-12 chr16 78742434 78742828 + 1.66667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 642977 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 164.667-4 chr1 150912845 150913080 + 1.66667 NA TTS (NR_148929) TTS (NR_148929) -13301 NM_001366417 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated histone lysine methyltransferase 1 protein-coding 286.167-13 chr3 110540351 110540736 + 1.66667 NA Intergenic Intergenic 529416 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 423.334-7 chr7 16392433 16392737 + 1.66667 NA intron (NM_001101426, intron 2 of 9) intron (NM_001101426, intron 2 of 9) 28953 NM_001368197 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 206-5 chr11 44270917 44271165 + 1.66667 NA intron (NM_021926, intron 2 of 3) intron (NM_021926, intron 2 of 3) 39098 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 261.334-9 chr3 94783086 94783592 + 1.66667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -154924 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 230-18 chr14 87609870 87610133 + 1.66667 NA Intergenic L1M6|LINE|L1 45293 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 436.833-8 chr6 53984527 53984987 + 1.66667 NA intron (NR_125842, intron 2 of 3) intron (NR_125842, intron 2 of 3) -14133 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 599.834-2 chr5 49658850 49659947 + 1.66667 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 781890 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 299.667-11 chr8 116834351 116834826 + 1.66667 NA Intergenic MLT1K|LTR|ERVL-MaLR -39836 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 567.5 chr11 43419260 43419770 + 1.66667 NA intron (NM_018259, intron 16 of 23) intron (NM_018259, intron 16 of 23) 60595 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 302.5-19 chr8 137877169 137877417 + 1.66667 NA intron (NR_161374, intron 2 of 7) L1MEg|LINE|L1 206252 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 444.333-6 chr9 74770740 74771335 + 1.66667 NA intron (NM_017662, intron 25 of 38) L2a|LINE|L2 116310 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 304.334-10 chr5 27657343 27657653 + 1.66667 NA Intergenic L1ME3F|LINE|L1 185206 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 477.334 chr1 74504061 74504383 + 1.66667 NA intron (NM_015978, intron 23 of 24) intron (NM_015978, intron 23 of 24) 8392 NM_001364666 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 473.334-2 chr10 100009266 100009651 + 1.66667 NA intron (NM_015221, intron 1 of 16) MIR3|SINE|MIR 489 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 194.167-27 chr5 18446031 18446294 + 1.66667 NA Intergenic L2a|LINE|L2 638888 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 236-10 chr2 13523139 13523442 + 1.66667 NA Intergenic Intergenic -516277 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 616.334 chr1 185969184 185970042 + 1.66667 NA intron (NM_031935, intron 14 of 106) intron (NM_031935, intron 14 of 106) 235222 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 690.334-2 chr5 11089313 11089885 + 1.66667 NA intron (NM_001364128, intron 12 of 19) intron (NM_001364128, intron 12 of 19) -328365 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 245.667-17 chr3 116190392 116190652 + 1.66667 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -169502 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 331.167-10 chr22 36546116 36546465 + 1.66667 NA Intergenic X7A_LINE|LINE|CR1 -17124 NR_156418 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 173.667-21 chr16 61592487 61592622 + 1.66667 NA Intergenic LTR8B|LTR|ERV1 443884 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 324.334-5 chr6 56505703 56506010 + 1.66667 NA intron (NM_001144770, intron 69 of 94) intron (NM_001144770, intron 69 of 94) -111728 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 207.333-35 chr4 174070217 174070432 + 1.66667 NA Intergenic Intergenic 150074 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 448.001 chr11 54882195 54882629 + 1.66667 NA Intergenic ALR/Alpha|Satellite|centr 175580 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 308.834-2 chr12 120814759 120814964 + 1.66667 NA intron (NM_139015, intron 1 of 10) L1ME4b|LINE|L1 89035 NM_001302554 35 Hs.507076 NM_000017 ENSG00000122971 ACADS ACAD3|SCAD acyl-CoA dehydrogenase short chain protein-coding 163.334-3 chr20 1434986 1435106 + 1.66667 NA Intergenic MER66C|LTR|ERV1 32646 NR_038164 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 394.167-14 chr9 21110735 21111125 + 1.66667 NA Intergenic Intergenic 30971 NM_002177 3467 Hs.73010 NM_002177 ENSG00000177047 IFNW1 - interferon omega 1 protein-coding 915.501 chr2 85132593 85133420 + 1.66667 NA promoter-TSS (NM_031283) promoter-TSS (NM_031283) -386 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 297.5-16 chr3 136752442 136752788 + 1.66667 NA promoter-TSS (NM_005862) promoter-TSS (NM_005862) -237 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 328.667-14 chr5 112922380 112922796 + 1.66667 NA promoter-TSS (NM_005669) promoter-TSS (NM_005669) -361 NM_005669 7905 Hs.429608 NM_005669 ENSG00000129625 REEP5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e receptor accessory protein 5 protein-coding 250-39 chrX 40544048 40544657 + 1.66667 NA Intergenic Intergenic -36618 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 581.5-4 chr5 166185205 166185921 + 1.66667 NA Intergenic Intergenic 740807 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 305.834-9 chr9 74571937 74572201 + 1.66667 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -43465 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 274.667-8 chr14 87674906 87675098 + 1.66667 NA Intergenic Intergenic -19708 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 399.167-4 chr2 9804853 9805314 + 1.66667 NA Intergenic MLT2C2|LTR|ERVL -38359 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 284.5-3 chr11 24128109 24128477 + 1.66667 NA Intergenic Intergenic -368760 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 338.667-8 chr20 59082163 59082899 + 1.66667 NA Intergenic Intergenic -39685 NR_037930 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 327.001 chr22 34548874 34549143 + 1.66667 NA Intergenic L1MEd|LINE|L1 448908 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 339.334-2 chr10 22250267 22250479 + 1.66667 NA Intergenic Intergenic -1699 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 485-3 chr18 6559928 6560641 + 1.66667 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 48868 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 435.667-6 chr8 80656942 80657323 + 1.66667 NA intron (NM_001033723, intron 7 of 8) intron (NM_001033723, intron 7 of 8) 170906 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 234.334-9 chr8 121317567 121317876 + 1.66667 NA Intergenic Intergenic -321625 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 246-26 chr5 95007290 95007683 + 1.66667 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 74380 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 373.167-12 chr9 31839192 31839531 + 1.66667 NA Intergenic Intergenic -457871 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 467.834-2 chr15 95026099 95026422 + 1.66667 NA Intergenic Intergenic 170897 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 302.333-3 chr11 13276721 13277005 + 1.66667 NA promoter-TSS (NR_147785) promoter-TSS (NR_147785) 211 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 377-14 chr8 94713574 94713941 + 1.66667 NA Intergenic HY3|scRNA|scRNA -6143 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 232.5-10 chr16 54434044 54434318 + 1.66667 NA Intergenic Intergenic -63482 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 271.167-17 chr5 30342697 30342972 + 1.66667 NA Intergenic L1P4|LINE|L1 462274 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 238.333-19 chr16 86164188 86164436 + 1.66667 NA Intergenic MER5B|DNA|hAT-Charlie -31869 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 209.334-3 chr14 34166781 34166908 + 1.66667 NA Intergenic Intergenic -215770 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 502.334-2 chr14 51555133 51555672 + 1.66667 NA intron (NR_047477, intron 2 of 3) intron (NR_047477, intron 2 of 3) 44550 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 226.667-40 chr8 113747888 113748068 + 1.66667 NA Intergenic MIRb|SINE|MIR -311039 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 312.333-14 chr2 104873394 104873766 + 1.66667 NA promoter-TSS (NR_110373) promoter-TSS (NR_110373) -985 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 299.834-3 chr12 111927577 111927858 + 1.66667 NA Intergenic Intergenic 28654 NR_036636 8759 Hs.661708 NR_036636 ADAM1A ADAM1|ADAM1P|FTNAP|Ftna|PH-30a ADAM metallopeptidase domain 1A (pseudogene) pseudo 224.334-10 chr7 8002088 8002336 + 1.66667 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 33416 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 629.833-3 chr1 211698018 211698912 + 1.66667 NA Intergenic MER5A|DNA|hAT-Charlie 22703 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 318.667-5 chr2 58079980 58080432 + 1.66667 NA intron (NM_001288836, intron 3 of 13) L1MEd|LINE|L1 33494 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 328.167-11 chr7 35674116 35674380 + 1.66667 NA intron (NM_022373, intron 2 of 8) intron (NM_022373, intron 2 of 8) 20887 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 290.001-2 chr1 231417829 231418098 + 1.66667 NA intron (NM_022051, intron 1 of 4) MIRc|SINE|MIR 7081 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 199.833 chr1 9588374 9588746 + 1.66667 NA promoter-TSS (NM_001130924) promoter-TSS (NM_001130924) -351 NM_001010866 199953 Hs.632365 NM_001010866 ENSG00000188807 TMEM201 Ima1|NET5|SAMP1 transmembrane protein 201 protein-coding 219.667-15 chr19 52127721 52127891 + 1.66667 NA intron (NM_178523, intron 2 of 3) intron (NM_178523, intron 2 of 3) 12132 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 738.333 chr12 24728106 24728941 + 1.66667 NA Intergenic Intergenic -144355 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 413.333-10 chr4 145612950 145613388 + 1.66667 NA Intergenic MSTD-int|LTR|ERVL-MaLR -6216 NM_172250 166785 Hs.452864 NM_172250 ENSG00000151611 MMAA cblA metabolism of cobalamin associated A protein-coding 207.667-24 chr20 46700000 46700200 + 1.66667 NA Intergenic MIRc|SINE|MIR -9549 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 320-12 chr3 135971430 135971901 + 1.66667 NA intron (NM_001190447, intron 1 of 12) intron (NM_001190447, intron 1 of 12) 5937 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 348.334-5 chr20 33229688 33229957 + 1.66667 NA Intergenic MIR|SINE|MIR -6174 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 400.167-2 chr3 150925435 150925896 + 1.66667 NA TTS (NM_001195794) TTS (NM_001195794) 18571 NM_052995 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 175.5-40 chr5 26122472 26122641 + 1.66667 NA Intergenic Intergenic 916030 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 321-9 chr15 65846410 65846880 + 1.66667 NA Intergenic Intergenic -22846 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 305.667-4 chr12 2739584 2739767 + 1.66667 NA Intergenic Intergenic -48518 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 169.667-57 chr7 37022735 37022934 + 1.66667 NA intron (NM_001206480, intron 15 of 21) L1ME3A|LINE|L1 25038 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 317.501 chr7 105488221 105488706 + 1.66667 NA intron (NM_001318164, intron 7 of 15) intron (NM_001318164, intron 7 of 15) 20057 NM_001318163 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 IDDABS pseudouridine synthase 7 protein-coding 304.833-10 chr6 21596858 21597178 + 1.66667 NA 3' UTR (NM_003107, exon 1 of 1) 3' UTR (NM_003107, exon 1 of 1) 3267 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box transcription factor 4 protein-coding 294.5-3 chr1 164616449 164616848 + 1.66667 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 56926 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 350.334-8 chr2 123251565 123251875 + 1.66667 NA Intergenic Tigger1|DNA|TcMar-Tigger -178239 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 220.334 chr1 161765769 161766085 + 1.66667 NA promoter-TSS (NM_007348) promoter-TSS (NM_007348) -393 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 338-7 chr22 28501205 28501566 + 1.66667 NA intron (NM_001145418, intron 2 of 22) L2a|LINE|L2 41516 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 263.834-6 chr21 17371613 17371849 + 1.66667 NA Intergenic Intergenic -67159 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 192.667-35 chr7 30413181 30413652 + 1.66667 NA Intergenic Intergenic 22531 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 273.667-20 chr8 71855158 71855465 + 1.66667 NA intron (NR_033651, intron 1 of 2) L1MB7|LINE|L1 -10815 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 224-23 chr2 63023250 63023708 + 1.66667 NA intron (NM_001142615, intron 19 of 22) intron (NM_001142615, intron 19 of 22) 24232 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 171.667-30 chr2 190689713 190689883 + 1.66667 NA intron (NM_001321314, intron 6 of 6) intron (NM_001321314, intron 6 of 6) 30640 NM_001321314 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 297.333-18 chr6 114068748 114069067 + 1.66667 NA intron (NR_125845, intron 4 of 9) intron (NR_125845, intron 4 of 9) -6030 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 205.167-15 chr20 25076222 25076441 + 1.66667 NA exon (NM_014588, exon 5 of 5) exon (NM_014588, exon 5 of 5) 6048 NR_045948 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 206.333-18 chr2 12970881 12971097 + 1.66667 NA intron (NR_038434, intron 5 of 5) MLT1H|LTR|ERVL-MaLR 36024 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 329.001 chr3 17644966 17645215 + 1.66667 NA intron (NM_001349090, intron 1 of 21) intron (NM_001349090, intron 1 of 21) 54930 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 369-14 chr8 83501207 83501591 + 1.66667 NA Intergenic Intergenic 97641 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 319.501-2 chr3 111080563 111080760 + 1.66667 NA intron (NM_001243288, intron 1 of 8) intron (NM_001243288, intron 1 of 8) 8845 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 248.334-13 chr5 13764594 13764781 + 1.66667 NA intron (NM_001369, intron 59 of 78) L1ME3|LINE|L1 179793 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 297.333-16 chr6 54618567 54618799 + 1.66667 NA Intergenic Intergenic -228088 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 167-22 chr2 236083496 236083636 + 1.66667 NA intron (NM_001037131, intron 16 of 17) intron (NM_001037131, intron 16 of 17) 84820 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 174.167-34 chr4 149914685 149915026 + 1.66667 NA Intergenic MER96B|DNA|hAT-Tip100 -99012 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 287-27 chr6 150918720 150919086 + 1.66667 NA intron (NM_001350486, intron 9 of 27) MLT1F1|LTR|ERVL-MaLR 52417 NM_001350491 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 289.334-2 chr10 89214977 89215260 + 1.66667 NA intron (NM_001127605, intron 9 of 9) intron (NM_001127605, intron 9 of 9) -7801 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 192.333-29 chr2 139482783 139483021 + 1.66667 NA Intergenic L1ME3A|LINE|L1 585578 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 207.5-34 chr7 54768624 54768804 + 1.66667 NA intron (NR_110040, intron 1 of 2) intron (NR_110040, intron 1 of 2) 9401 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 320.666-6 chr18 10475334 10475562 + 1.66667 NA intron (NM_153000, intron 3 of 4) L1ME4b|LINE|L1 20813 NM_153000 147495 Hs.293274 NM_153000 ENSG00000154856 APCDD1 B7323|DRAPC1|FP7019|HHS|HTS|HYPT1 APC down-regulated 1 protein-coding 335.168 chr18 68473860 68474109 + 1.66667 NA Intergenic L1P4|LINE|L1 241124 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 240.834-8 chr6 62263811 62264077 + 1.66667 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 22281 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 754.834 chr17 50638729 50639573 + 1.66667 NA intron (NM_003786, intron 1 of 30) intron (NM_003786, intron 1 of 30) 4270 NM_001144070 8714 Hs.463421 NM_003786 ENSG00000108846 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP binding cassette subfamily C member 3 protein-coding 320.333-6 chr4 143215546 143215769 + 1.66667 NA TTS (NM_001290325) TTS (NM_001290325) 30740 NM_032557 84640 Hs.480848 NM_032557 ENSG00000170185 USP38 HP43.8KD ubiquitin specific peptidase 38 protein-coding 615.001-2 chr17 81252923 81253533 + 1.66667 NA exon (NM_138570, exon 12 of 14) exon (NM_138570, exon 12 of 14) 13314 NR_148426 284184 Hs.356545 NM_001086521 ENSG00000224877 NDUFAF8 C17orf89 NADH:ubiquinone oxidoreductase complex assembly factor 8 protein-coding 236-5 chr12 43927374 43927623 + 1.66667 NA intron (NM_001286213, intron 2 of 6) L1MEd|LINE|L1 91417 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 224.167-9 chr16 4914488 4914650 + 1.66667 NA intron (NM_002705, intron 1 of 21) intron (NM_002705, intron 1 of 21) 22579 NM_002705 5493 Hs.192233 NM_002705 ENSG00000118898 PPL - periplakin protein-coding 250.834-4 chr15 90451449 90451749 + 1.66667 NA intron (NM_003870, intron 11 of 37) MSTB2|LTR|ERVL-MaLR 63357 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 192-34 chr6 27721746 27721951 + 1.66667 NA Intergenic Intergenic 27769 NR_038292 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 220-37 chr9 122320004 122320226 + 1.66667 NA intron (NR_144421, intron 8 of 8) AluJb|SINE|Alu -50418 NM_001271368 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 172.5-40 chr4 54583665 54583840 + 1.66667 NA Intergenic Intergenic 23379 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 309.667-5 chr12 43444186 43444443 + 1.66667 NA intron (NM_025003, intron 15 of 38) intron (NM_025003, intron 15 of 38) 107889 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 500.667 chr15 85010642 85011303 + 1.66667 NA intron (NM_173454, intron 1 of 20) intron (NM_173454, intron 1 of 20) 28998 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 446.001 chr20 43764005 43764364 + 1.66667 NA Intergenic Intergenic -37182 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 352-8 chr21 18952070 18952502 + 1.66667 NA Intergenic L1M4b|LINE|L1 -192474 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 501.168 chr3 127257505 127257886 + 1.66667 NA Intergenic Intergenic 30351 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 405.001 chr3 122725938 122726247 + 1.66667 NA intron (NM_017554, intron 15 of 16) L1MEg|LINE|L1 45253 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 278.334-8 chr22 36301444 36301927 + 1.66667 NA intron (NM_002473, intron 20 of 40) intron (NM_002473, intron 20 of 40) -14778 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 175-11 chr11 95561061 95561328 + 1.66667 NA Intergenic MIRb|SINE|MIR 228588 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 235-23 chr4 19833283 19833575 + 1.66667 NA Intergenic AluSg|SINE|Alu -418476 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 347.167-11 chr21 35557097 35557384 + 1.66667 NA intron (NR_073512, intron 1 of 2) intron (NR_073512, intron 1 of 2) 23524 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 273.333-20 chr7 141534295 141534790 + 1.66667 NA Intergenic MIRc|SINE|MIR -16868 NM_001364948 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 199.667-44 chr7 53066287 53066472 + 1.66667 NA Intergenic Intergenic 30746 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 388.501-2 chr2 201795823 201796267 + 1.66667 NA Intergenic Tigger16a|DNA|TcMar-Tigger -10384 NM_139158 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 308.5-8 chr14 64496800 64497139 + 1.66667 NA intron (NM_001354685, intron 2 of 4) MIRc|SINE|MIR 1023 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 374.334-2 chr8 114338191 114338681 + 1.66667 NA Intergenic LTR108d_Mam|LTR|ERVL -901497 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 316.334-4 chr14 70766244 70766639 + 1.66667 NA intron (NM_001284231, intron 1 of 11) intron (NM_001284231, intron 1 of 11) 17011 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 305.334-3 chr10 128631736 128631968 + 1.66667 NA Intergenic Intergenic -280981 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 348.001-3 chr19 40403168 40403492 + 1.66667 NA intron (NM_020956, intron 5 of 5) MIR|SINE|MIR 10034 NM_181882 57716 Hs.205457 NM_020956 ENSG00000105227 PRX CMT4F periaxin protein-coding 179.167-3 chr1 178536930 178537230 + 1.66667 NA Intergenic Intergenic -5716 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 311.667-17 chr7 27564889 27565106 + 1.66667 NA intron (NM_152740, intron 4 of 7) MER74A|LTR|ERVL -50977 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 834.501 chr3 113493560 113494683 + 1.66667 NA exon (NM_144718, exon 5 of 18) exon (NM_144718, exon 5 of 18) 20723 NM_001331079 152185 Hs.477144 NM_144718 ENSG00000163611 SPICE1 CCDC52|SPICE spindle and centriole associated protein 1 protein-coding 310.001-4 chr6 53617739 53618008 + 1.66667 NA Intergenic AluJb|SINE|Alu -10507 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 237.667-29 chr4 7789958 7790225 + 1.66667 NA intron (NM_198595, intron 11 of 16) intron (NM_198595, intron 11 of 16) 36001 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 173.667-13 chr12 114496104 114496336 + 1.66667 NA Intergenic Intergenic -87778 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 307.5-16 chr2 23984582 23984828 + 1.66667 NA exon (NM_181713, exon 6 of 7) exon (NM_181713, exon 6 of 7) -25380 NM_001346880 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 674.167-4 chr6 127121286 127121895 + 1.66667 NA intron (NM_032784, intron 1 of 4) intron (NM_032784, intron 1 of 4) 2919 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 277.001-2 chr9 5952474 5952644 + 1.66667 NA intron (NM_001017969, intron 4 of 7) MER112|DNA|hAT-Charlie -55267 NR_039811 100616288 NR_039811 ENSG00000263575 MIR4665 mir-4665 microRNA 4665 ncRNA 449.168 chr3 32373777 32374143 + 1.66667 NA Intergenic MLT1K|LTR|ERVL-MaLR -17893 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 273.167-9 chr2 117721621 117722079 + 1.66667 NA Intergenic AluSx1|SINE|Alu -92841 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 1069.33 chr16 14249285 14250267 + 1.66667 NA intron (NM_001308142, intron 13 of 16) intron (NM_001308142, intron 13 of 16) -52512 NR_132983 100129781 Hs.190748 NR_132983 MIR193BHG - MIR193B host gene ncRNA 192.334-5 chr4 43572857 43573079 + 1.66667 NA Intergenic Intergenic -80425 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 200.5 chr1 78607505 78607756 + 1.66667 NA Intergenic (ATTTG)n|Simple_repeat|Simple_repeat -12818 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 178.666-5 chr4 113382929 113383123 + 1.66667 NA 3' UTR (NM_001354279, exon 25 of 25) 3' UTR (NM_001354279, exon 25 of 25) 90187 NM_001354282 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 182.333-28 chr8 117060753 117060873 + 1.66667 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -74182 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 372.833-6 chr2 167371114 167371585 + 1.66667 NA Intergenic Intergenic 183977 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 281.334-13 chr7 89368424 89368694 + 1.66667 NA Intergenic Intergenic -572822 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 350-3 chr1 166944290 166944768 + 1.66667 NA intron (NM_199351, intron 3 of 9) intron (NM_199351, intron 3 of 9) 31011 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 208.5-23 chr2 189985323 189985826 + 1.66667 NA Intergenic MLT1E3|LTR|ERVL-MaLR 77155 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 291-27 chrX 81917131 81917637 + 1.66667 NA Intergenic L1MC3|LINE|L1 715282 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 391.501-2 chr2 20709445 20709786 + 1.66667 NA intron (NR_104233, intron 3 of 4) L1MB7|LINE|L1 42471 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 259.333-26 chr5 26466871 26467179 + 1.66667 NA Intergenic Intergenic 571561 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 290.667-10 chr2 1839331 1839802 + 1.66667 NA intron (NM_015025, intron 20 of 24) intron (NM_015025, intron 20 of 24) -95051 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 290.667-17 chr6 80338412 80338700 + 1.66667 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 231885 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 279.667-12 chr2 48622448 48622718 + 1.66667 NA intron (NM_001198594, intron 4 of 7) AluSx|SINE|Alu 4727 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 538.334 chr14 48126907 48127429 + 1.66667 NA Intergenic Intergenic -332154 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 350.667-18 chr7 24943343 24943618 + 1.66667 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 36698 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 312.834-2 chr12 120234699 120235123 + 1.66667 NA intron (NM_002859, intron 1 of 10) intron (NM_002859, intron 1 of 10) 15252 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 292.334-3 chr2 55538147 55538411 + 1.66667 NA intron (NM_001282761, intron 8 of 10) intron (NM_001282761, intron 8 of 10) 18684 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 239.667 chr1 8571209 8571479 + 1.66667 NA intron (NM_001042681, intron 4 of 22) intron (NM_001042681, intron 4 of 22) -76431 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 203.667-7 chr10 70221023 70221185 + 1.66667 NA intron (NM_021129, intron 2 of 10) AluJb|SINE|Alu 12325 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 248.334-12 chr4 48579417 48579659 + 1.66667 NA intron (NM_015030, intron 22 of 63) intron (NM_015030, intron 22 of 63) 89286 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 176.334-5 chr6 17505086 17505429 + 1.66667 NA intron (NR_110855, intron 2 of 3) MIRb|SINE|MIR 6008 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 634.667 chr8 80686716 80687475 + 1.66667 NA intron (NM_001033723, intron 4 of 8) intron (NM_001033723, intron 4 of 8) 187373 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 292.5-8 chr18 6317871 6318162 + 1.66667 NA intron (NM_001365765, intron 1 of 18) L1PB3|LINE|L1 41014 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 249.167-21 chr4 63850058 63850292 + 1.66667 NA Intergenic A-rich|Low_complexity|Low_complexity 559275 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 349.166-2 chr15 56869704 56869999 + 1.66667 NA Intergenic Intergenic -48239 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 327.667-17 chr6 169291990 169292332 + 1.66667 NA Intergenic Intergenic -38047 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 322.334-7 chr6 55057456 55057656 + 1.66667 NA Intergenic L1MA4|LINE|L1 -48904 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 385.167-15 chr9 97649148 97649588 + 1.66667 NA intron (NM_001351507, intron 8 of 21) MER20|DNA|hAT-Charlie 15547 NM_002486 4686 Hs.595669 NM_002486 ENSG00000136937 NCBP1 CBP80|NCBP|Sto1 nuclear cap binding protein subunit 1 protein-coding 175-31 chr2 132448797 132449044 + 1.66667 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 15209 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 542.166 chr19 29610509 29611006 + 1.66667 NA intron (NM_006627, intron 3 of 6) intron (NM_006627, intron 3 of 6) 4474 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 265.667-20 chr7 7760005 7760479 + 1.66667 NA intron (NM_001302350, intron 3 of 4) MLT1H1|LTR|ERVL-MaLR -41635 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 206.667-46 chr7 23916255 23916446 + 1.66667 NA Intergenic Intergenic 206131 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 414.001-3 chr6 69730003 69730431 + 1.66667 NA intron (NM_001367272, intron 7 of 15) intron (NM_001367272, intron 7 of 15) 66249 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 246-14 chr19 36383883 36384137 + 1.66667 NA 3' UTR (NM_001321919, exon 5 of 5) 3' UTR (NM_001321919, exon 5 of 5) -4809 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 201.834-3 chr14 44578460 44578599 + 1.66667 NA Intergenic L1M1|LINE|L1 71120 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 321.501-6 chr4 48882394 48882621 + 1.66667 NA Intergenic AluY|SINE|Alu -22304 NR_146806 100861517 Hs.661065 NR_146806 ENSG00000248256 OCIAD1-AS1 - OCIAD1 antisense RNA 1 ncRNA 275.167-18 chr3 129809282 129809471 + 1.66667 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) -14764 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 212.5-34 chr8 88380807 88380980 + 1.66667 NA Intergenic Intergenic -53410 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 173.5-52 chr8 48930135 48930545 + 1.66667 NA Intergenic Intergenic -8911 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 258-13 chr17 27545929 27546199 + 1.66667 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 74100 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 321.001 chr1 53845672 53845884 + 1.66667 NA Intergenic Intergenic -7482 NM_001168551 55706 Hs.476525 NM_018087 ENSG00000058804 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 165.833-26 chr21 21171254 21171414 + 1.66667 NA intron (NM_001352597, intron 1 of 10) MIRb|SINE|MIR 24172 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 234.333 chr1 19487693 19488186 + 1.66667 NA Intergenic L2a|LINE|L2 -2400 NM_001206541 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 530.667-5 chr5 145907782 145908258 + 1.66667 NA Intergenic Intergenic -28558 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 168.334-2 chr17 65557939 65558144 + 1.66667 NA exon (NM_004655, exon 2 of 11) exon (NM_004655, exon 2 of 11) 3607 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 193.167-8 chr13 94598404 94598572 + 1.66667 NA Intergenic Intergenic -2336 NR_130732 23483 Hs.12393 NM_014305 ENSG00000088451 TGDS CATMANS|SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 342.833-14 chr22 37563379 37563656 + 1.66667 NA intron (NM_152243, intron 1 of 2) intron (NM_152243, intron 1 of 2) 3037 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 326.334 chr13 23871808 23872044 + 1.66667 NA intron (NM_005932, intron 5 of 18) intron (NM_005932, intron 5 of 18) -16942 NM_001014442 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 488-3 chr18 2104135 2105030 + 1.66667 NA Intergenic Intergenic 466923 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 383.334-3 chr3 185807577 185808391 + 1.66667 NA intron (NR_138486, intron 2 of 15) MLT1F|LTR|ERVL-MaLR 13147 NM_001291873 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 297.334-3 chr1 225700947 225701176 + 1.66667 NA Intergenic MLT1L|LTR|ERVL-MaLR -47938 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 297-15 chr21 30643456 30643707 + 1.66667 NA TTS (NM_001128077) TTS (NM_001128077) 717 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 392.667-4 chr13 37334717 37335082 + 1.66667 NA Intergenic L2c|LINE|L2 149885 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 370.334-9 chr5 3547557 3548033 + 1.66667 NA Intergenic L1MC1|LINE|L1 -11701 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 354-16 chr7 90622348 90622629 + 1.66667 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) 26167 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 505.501-2 chr8 118149951 118150568 + 1.66667 NA intron (NR_146234, intron 4 of 5) L1MEc|LINE|L1 -38440 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 252.334-4 chr19 36971215 36971435 + 1.66667 NA intron (NM_001204839, intron 5 of 8) intron (NM_001204839, intron 5 of 8) 54993 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 185.667-32 chr3 181236165 181236353 + 1.66667 NA intron (NR_075091, intron 3 of 7) CR1_Mam|LINE|CR1 4522 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 360-9 chr19 8098670 8099114 + 1.66667 NA intron (NM_032447, intron 41 of 63) L1ME3G|LINE|L1 46130 NM_001201359 6370 Hs.310511 NM_005624 ENSG00000131142 CCL25 Ckb15|SCYA25|TECK C-C motif chemokine ligand 25 protein-coding 367.667-9 chr6 117014513 117014978 + 1.66667 NA Intergenic LTR12C|LTR|ERV1 137503 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 769.001 chr11 111454447 111455526 + 1.66667 NA Intergenic Intergenic -36800 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 321.5-4 chr10 65322286 65322619 + 1.66667 NA Intergenic Intergenic -248973 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 362-2 chr1 61854535 61854839 + 1.66667 NA intron (NM_001350145, intron 17 of 43) MIR|SINE|MIR 8612 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 583.333 chr1 111333941 111334619 + 1.66667 NA Intergenic L1MEg|LINE|L1 -12280 NR_125338 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 366.667-4 chr22 37622990 37623362 + 1.66667 NA intron (NM_001001560, intron 7 of 14) intron (NM_001001560, intron 7 of 14) 14136 NM_001172688 26088 Hs.499158 NM_013365 ENSG00000100083 GGA1 - golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 244.333-26 chr4 145190683 145190961 + 1.66667 NA Intergenic L1ME1|LINE|L1 -10233 NM_001366057 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 296.833-8 chrX 101206474 101206769 + 1.66667 NA Intergenic MIRb|SINE|MIR -13323 NM_001171184 1821 Hs.159291 NM_001939 ENSG00000102385 DRP2 DRP-2 dystrophin related protein 2 protein-coding 259-3 chr1 176116492 176116794 + 1.66667 NA exon (NM_001001740, exon 8 of 19) exon (NM_001001740, exon 8 of 19) 90601 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 450-3 chr11 39838062 39838588 + 1.66667 NA Intergenic Intergenic 454805 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 339.334-3 chr10 50419214 50419469 + 1.66667 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -170731 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 323.334-3 chr2 235160441 235160743 + 1.66667 NA Intergenic MLT1D|LTR|ERVL-MaLR 132857 NM_001371306 278.667-32 chr8 86384475 86384791 + 1.66667 NA intron (NM_007013, intron 5 of 24) intron (NM_007013, intron 5 of 24) 42086 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 226.667-32 chr5 21919397 21919636 + 1.66667 NA intron (NM_004061, intron 6 of 14) intron (NM_004061, intron 6 of 14) -29669 NM_001364109 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 249.667-18 chr2 227853372 227853642 + 1.66667 NA Intergenic Intergenic -17869 NM_001330004 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 511.667-2 chr7 45111459 45112038 + 1.66667 NA promoter-TSS (NM_004749) promoter-TSS (NM_004749) -1 NM_199122 9238 Hs.231411 NM_004749 ENSG00000136270 TBRG4 CPR2|FASTKD4 transforming growth factor beta regulator 4 protein-coding 402.667-11 chr2 177489385 177489909 + 1.66667 NA intron (NM_003659, intron 11 of 19) intron (NM_003659, intron 11 of 19) 63149 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 347.334-9 chr8 124971098 124971525 + 1.66667 NA Intergenic L2c|LINE|L2 -1984 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 307.667-20 chr7 89516259 89516499 + 1.66667 NA Intergenic Intergenic -603021 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 392.667 chr10 16258299 16258659 + 1.66667 NA Intergenic Intergenic -178464 NM_001001484 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 690.001 chr8 56078690 56079727 + 1.66667 NA Intergenic Intergenic 4616 NR_149110 105375847 NR_149110 ENSG00000253603 CERNA3 CTA competing endogenous lncRNA 3 for miR-645 ncRNA 454.501 chr22 36287488 36288092 + 1.66667 NA promoter-TSS (NR_106877) promoter-TSS (NR_106877) -883 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 393.167-7 chr6 47780129 47780364 + 1.66667 NA Intergenic Intergenic -1793 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 432.334-3 chr2 47853887 47854299 + 1.66667 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 34626 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 334.334-6 chr14 53325412 53325629 + 1.66667 NA Intergenic Intergenic 172166 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 386.667-9 chr4 22552983 22553298 + 1.66667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -37074 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 395.334-4 chr2 174339729 174340316 + 1.66667 NA Intergenic Intergenic 5068 NM_001145250 100131390 NM_001145250 ENSG00000217236 SP9 ZNF990 Sp9 transcription factor protein-coding 195.667-29 chr3 28026501 28026796 + 1.66667 NA Intergenic L1MA9|LINE|L1 -192512 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 347.834-4 chr3 61999521 61999891 + 1.66667 NA intron (NM_002841, intron 3 of 29) MER113|DNA|hAT-Charlie 319241 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 397.334-2 chr18 13680551 13680899 + 1.66667 NA intron (NM_152352, intron 2 of 3) intron (NM_152352, intron 2 of 3) 38967 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 368.667-2 chr1 108212713 108213083 + 1.66667 NA Intergenic Intergenic -12555 NM_013386 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 330.001-3 chr9 39588147 39588567 + 1.66667 NA Intergenic L1M3e|LINE|L1 -123831 NR_003528 401509 Hs.449445 NM_001032297 ZNF658B - zinc finger protein 658B (pseudogene) pseudo 279.667-27 chr8 121160975 121161183 + 1.66667 NA Intergenic Intergenic -349033 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 209.667-35 chr5 58582869 58583050 + 1.66667 NA promoter-TSS (NM_138453) promoter-TSS (NM_138453) -116 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 325.667-4 chr2 143282928 143283366 + 1.66667 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 153728 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 350.001-2 chr10 71153647 71153969 + 1.66667 NA Intergenic Intergenic -58762 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 366-2 chr12 103199930 103200323 + 1.66667 NA Intergenic L1MA10|LINE|L1 48284 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 477.667-4 chr7 38335760 38336260 + 1.66667 NA Intergenic Intergenic -5567 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 218-39 chrX 103532449 103532826 + 1.66667 NA intron (NR_131237, intron 4 of 5) intron (NR_131237, intron 4 of 5) -13148 NM_080879 142684 Hs.706904 NM_080879 ENSG00000172476 RAB40A RAR2|RAR2A RAB40A, member RAS oncogene family protein-coding 302.334-12 chr8 117033271 117033494 + 1.66667 NA intron (NM_001172813, intron 2 of 10) L1MB5|LINE|L1 82407 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 206-8 chr12 40441870 40442195 + 1.66667 NA intron (NM_173600, intron 32 of 173) intron (NM_173600, intron 32 of 173) 48638 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 275.834-3 chr2 98487879 98488056 + 1.66667 NA intron (NM_001351428, intron 1 of 24) MER65C|LTR|ERV1 41957 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 327-11 chr15 96894313 96894656 + 1.66667 NA Intergenic Intergenic 111049 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 258.667-22 chr5 24057437 24057733 + 1.66667 NA intron (NR_131245, intron 4 of 4) L1MA3|LINE|L1 106237 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 228.667-25 chr20 10922545 10922692 + 1.66667 NA Intergenic Intergenic -13346 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 422-6 chr15 90086738 90087540 + 1.66667 NA exon (NM_001290114, exon 5 of 9) exon (NM_001290114, exon 5 of 9) -4932 NR_146321 109729181 Hs.655249 NR_146321 ENSG00000259291 ZNF710-AS1 - ZNF710 antisense RNA 1 ncRNA 281.167-4 chr11 5893974 5894225 + 1.66667 NA Intergenic Intergenic -6666 NM_001005166 390082 NM_001005166 ENSG00000277932 OR52E5 OR11-56 olfactory receptor family 52 subfamily E member 5 protein-coding 249.5-28 chrX 98227590 98227920 + 1.66667 NA Intergenic L2c|LINE|L2 -663220 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 377.001-2 chr4 30785414 30785905 + 1.66667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 65290 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 342 chr1 114989849 114990286 + 1.66667 NA intron (NR_104211, intron 31 of 32) L1M4c|LINE|L1 -39757 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 345-27 chr8 63338047 63338341 + 1.66667 NA Intergenic Intergenic -127655 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 363.334-4 chr4 67207291 67207525 + 1.66667 NA Intergenic Intergenic 214592 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 320.334 chr1 246453055 246453373 + 1.66667 NA intron (NM_001167740, intron 1 of 11) MIR|SINE|MIR -35802 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 689.834 chr2 70602940 70603642 + 1.66667 NA Intergenic L1MD1|LINE|L1 -49465 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 429.167 chr11 31936023 31936370 + 1.66667 NA Intergenic Intergenic 105122 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 303-15 chr4 122299014 122299340 + 1.66667 NA intron (NM_015312, intron 52 of 83) intron (NM_015312, intron 52 of 83) -79834 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 201.667-31 chr21 20996182 20996362 + 1.66667 NA Intergenic MER2|DNA|TcMar-Tigger -2137 NM_001352593 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 271-30 chr6 145701247 145701481 + 1.66667 NA intron (NM_001360064, intron 1 of 3) MLT1L|LTR|ERVL-MaLR -14487 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 241.667-26 chr6 117756969 117757234 + 1.66667 NA Intergenic L1M1|LINE|L1 81632 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 319.333-6 chr16 89991150 89991526 + 1.66667 NA intron (NR_003228, intron 8 of 12) intron (NR_003228, intron 8 of 12) -18506 NM_145039 92806 Hs.513832 NM_145039 ENSG00000177946 CENPBD1 - CENPB DNA-binding domain containing 1 protein-coding 405.667-6 chr4 48834108 48834656 + 1.66667 NA intron (NM_001079839, intron 3 of 8) AluSq2|SINE|Alu 3076 NM_001168254 54940 Hs.518750 NM_017830 ENSG00000109180 OCIAD1 ASRIJ|OCIA|TPA018 OCIA domain containing 1 protein-coding 319 chr1 170529719 170529989 + 1.66667 NA intron (NR_125958, intron 1 of 2) intron (NR_125958, intron 1 of 2) -2268 NM_001146039 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 368.334 chr10 95208270 95208933 + 1.66667 NA intron (NM_207321, intron 4 of 10) MER44A|DNA|TcMar-Tigger 14401 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 298.667-10 chr2 101203385 101203669 + 1.66667 NA Intergenic Intergenic -49359 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 232.667-30 chr5 146174448 146174607 + 1.66667 NA intron (NM_001317965, intron 1 of 30) (AT)n|Simple_repeat|Simple_repeat 8123 NM_020117 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 232.667-41 chr9 108671443 108671627 + 1.66667 NA Intergenic Intergenic 184451 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 680.335 chr8 86870508 86871214 + 1.66667 NA intron (NM_173538, intron 1 of 10) intron (NM_173538, intron 1 of 10) 4446 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 236.667-26 chr6 116125378 116125614 + 1.66667 NA 5' UTR (NM_000493, exon 2 of 3) 5' UTR (NM_000493, exon 2 of 3) 636 NM_000493 1300 Hs.520339 NM_000493 ENSG00000123500 COL10A1 - collagen type X alpha 1 chain protein-coding 431-10 chr3 104683642 104684055 + 1.66667 NA Intergenic L1ME3E|LINE|L1 -682865 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 270.834-3 chr16 96861 97186 + 1.66667 NA intron (NM_001039476, intron 6 of 10) intron (NM_001039476, intron 6 of 10) 18798 NM_001015052 4350 Hs.459596 NM_002434 ENSG00000103152 MPG AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg N-methylpurine DNA glycosylase protein-coding 371.334-4 chr7 49592140 49592478 + 1.66667 NA Intergenic L1MC5a|LINE|L1 -181329 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 340-13 chr5 12295736 12296007 + 1.66667 NA Intergenic L1MA6|LINE|L1 -278986 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 574.999 chr4 180298023 180298776 + 1.66667 NA Intergenic Intergenic 860750 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 229.667-28 chr5 28918126 28918321 + 1.66667 NA Intergenic Intergenic -8647 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 261.5-29 chr4 125314710 125314972 + 1.66667 NA Intergenic CpG -1571 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 356.666 chr11 128634190 128634592 + 1.66667 NA Intergenic Intergenic -46833 NM_001143820 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 361.501 chr22 38298652 38299246 + 1.66667 NA intron (NM_001894, intron 6 of 10) intron (NM_001894, intron 6 of 10) 18484 NM_152221 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIe|CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 283.834-2 chr15 35043704 35043947 + 1.66667 NA Intergenic Intergenic 41583 NM_001355281 388112 Hs.635882 NM_001355281 ENSG00000255192 NANOGP8 NANOGP1|PN8 Nanog homeobox retrogene P8 protein-coding 462.667-4 chr9 86141870 86142314 + 1.66667 NA intron (NR_110996, intron 2 of 4) MER34A|LTR|ERV1 14552 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 267.167 chr10 84275596 84276029 + 1.66667 NA Intergenic L1MD2|LINE|L1 -4168 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 316.334-7 chr2 204609641 204609858 + 1.66667 NA intron (NM_205863, intron 1 of 21) MER4D1|LTR|ERV1 64274 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 521.501 chr11 18802452 18803418 + 1.66667 NA Intergenic Intergenic -10214 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 458-2 chr1 212477058 212477644 + 1.66667 NA Intergenic Intergenic 44431 NM_013349 29937 Hs.461787 NM_013349 ENSG00000117691 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 425.667-4 chr8 120119351 120119905 + 1.66667 NA Intergenic Tigger3a|DNA|TcMar-Tigger -5474 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 268.167-11 chr15 58266658 58266907 + 1.66667 NA Intergenic Intergenic 128401 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 268.667-21 chr3 165435047 165435221 + 1.66667 NA intron (NR_125764, intron 3 of 5) HAL1ME|LINE|L1 228174 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 218-22 chr2 116814852 116815060 + 1.66667 NA Intergenic Intergenic -999735 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 179.5-17 chr15 41811512 41811635 + 1.66667 NA intron (NR_049762, intron 4 of 28) intron (NR_049762, intron 4 of 28) -16512 NM_005090 8681 Hs.198161 NM_005090 ENSG00000168970 JMJD7-PLA2G4B HsT16992|cPLA2-beta JMJD7-PLA2G4B readthrough protein-coding 182.667-28 chr2 215239000 215239161 + 1.66667 NA Intergenic Intergenic -72979 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 502-2 chr1 195258018 195258505 + 1.66667 NA Intergenic Intergenic 830454 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 235.667-11 chr14 76844463 76844696 + 1.66667 NA intron (NM_194287, intron 6 of 13) intron (NM_194287, intron 6 of 13) 18171 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 290.833-2 chr10 118754765 118755112 + 1.66667 NA promoter-TSS (NM_153810) promoter-TSS (NM_153810) 32 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 306.167-7 chr22 31453689 31454077 + 1.66667 NA intron (NM_001164502, intron 8 of 16) intron (NM_001164502, intron 8 of 16) 35673 NM_001164501 56478 Hs.517559 NM_019843 ENSG00000184708 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 335.834-5 chr2 164317480 164317727 + 1.66667 NA Intergenic Intergenic 250892 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 255.167-6 chr10 13056696 13056884 + 1.66667 NA intron (NM_001282658, intron 4 of 6) intron (NM_001282658, intron 4 of 6) 43199 NM_001282658 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 357.333-11 chr5 120801817 120802125 + 1.66667 NA Intergenic Intergenic 270507 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 236.667-11 chr15 50088006 50088220 + 1.66667 NA intron (NR_073597, intron 2 of 26) AluSx1|SINE|Alu 25266 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 319.167-6 chr14 22867626 22867975 + 1.66667 NA Intergenic AluSx|SINE|Alu -3940 NM_001329226 26020 Hs.525232 NM_014045 ENSG00000197324 LRP10 LRP-10|LRP9|MST087|MSTP087 LDL receptor related protein 10 protein-coding 211.334 chr10 76026858 76027063 + 1.66667 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 244199 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 277.5-28 chrX 132647650 132647836 + 1.66667 NA intron (NM_147175, intron 3 of 3) intron (NM_147175, intron 3 of 3) -19899 NR_046691 100874102 Hs.619341 NR_046691 ENSG00000235849 HS6ST2-AS1 - HS6ST2 antisense RNA 1 ncRNA 233-32 chr7 49584989 49585193 + 1.66667 NA Intergenic Intergenic -188547 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 195-42 chr7 93715205 93715397 + 1.66667 NA Intergenic Intergenic -1627 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 165-31 chr2 96580794 96580957 + 1.66667 NA Intergenic Intergenic 42996 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 239.167-21 chr20 55069139 55069322 + 1.66667 NA Intergenic Intergenic -353813 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 300.5 chr1 16905155 16905587 + 1.66667 NA Intergenic Intergenic 9391 NR_004421 6060 NR_004421 ENSG00000207389 RNU1-4 HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F RNA, U1 small nuclear 4 snRNA 318-4 chr11 98807924 98808163 + 1.66667 NA Intergenic L1PB4|LINE|L1 -212906 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 268.334-7 chr3 16258221 16258442 + 1.66667 NA 3' UTR (NM_001047434, exon 2 of 2) 3' UTR (NM_001047434, exon 2 of 2) 6612 NM_001047434 285381 Hs.388087 NM_206831 ENSG00000154813 DPH3 DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 diphthamide biosynthesis 3 protein-coding 211.667-47 chr8 140797007 140797300 + 1.66667 NA intron (NR_148037, intron 13 of 34) intron (NR_148037, intron 13 of 34) -64500 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 437.667-6 chr8 31145982 31146326 + 1.66667 NA intron (NM_000553, intron 28 of 34) HAL1|LINE|L1 -112798 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 221.667-21 chr2 69013628 69013806 + 1.66667 NA intron (NM_032208, intron 1 of 17) CpG 573 NM_053034 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 186.333-41 chr8 120387754 120387941 + 1.66667 NA Intergenic L1PB3|LINE|L1 57303 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 294.501 chr16 74279579 74279784 + 1.66667 NA Intergenic AluSp|SINE|Alu -17133 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 258.833-2 chr11 64810536 64810720 + 1.66667 NA promoter-TSS (NM_130801) promoter-TSS (NM_130801) -65 NM_130800 4221 Hs.423348 NM_000244 ENSG00000133895 MEN1 MEAI|SCG2 menin 1 protein-coding 279-4 chr1 183645966 183646211 + 1.66667 NA TTS (NM_203454) TTS (NM_203454) 7228 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 317.334-5 chr17 71228612 71228931 + 1.66667 NA Intergenic Intergenic -26592 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 585.501-3 chr7 45711502 45711972 + 1.66667 NA intron (NM_021116, intron 19 of 19) (TA)n|Simple_repeat|Simple_repeat 57281 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 197.667-36 chr3 52685939 52686104 + 1.66667 NA promoter-TSS (NM_001366075) promoter-TSS (NM_001366075) -11 NM_014366 26354 Hs.313544 NM_014366 ENSG00000163938 GNL3 C77032|E2IG3|NNP47|NS G protein nucleolar 3 protein-coding 292.501-2 chr12 21774036 21774332 + 1.66667 NA intron (NM_004982, intron 1 of 2) intron (NM_004982, intron 1 of 2) 522 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 249.167-17 chr20 49526609 49526804 + 1.66667 NA intron (NM_000961, intron 5 of 9) L1MB4|LINE|L1 41431 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 258.334-3 chr15 64494940 64495101 + 1.66667 NA Intergenic Intergenic -4400 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 216.667-3 chr10 43947495 43947719 + 1.66667 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 35205 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 367-15 chr2 195168914 195169264 + 1.66667 NA Intergenic Intergenic 438494 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 491-4 chr12 21696878 21697279 + 1.66667 NA Intergenic MIRb|SINE|MIR -39223 NM_001315537 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 324.001 chr12 14783954 14784329 + 1.66667 NA TTS (NM_016312) TTS (NM_016312) 9805 NM_177925 55766 Hs.524280 NM_018267 ENSG00000246705 H2AFJ H2AJ H2A histone family member J protein-coding 279.667-4 chr11 128218944 128219165 + 1.66667 NA intron (NR_146647, intron 3 of 3) intron (NR_146647, intron 3 of 3) 10288 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 276.334-11 chrX 30735919 30736212 + 1.66667 NA Intergenic Intergenic 82706 NM_000167 2710 Hs.1466 NM_000167 ENSG00000198814 GK GK1|GKD glycerol kinase protein-coding 264.667 chr1 116084181 116084451 + 1.66667 NA Intergenic Intergenic -27439 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 348.667-4 chr11 113967080 113967459 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -7806 NR_046363 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 389-6 chr16 21083751 21084231 + 1.66667 NA intron (NM_001347886, intron 19 of 61) intron (NM_001347886, intron 19 of 61) 66855 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 364.333-9 chr7 71090307 71090745 + 1.66667 NA Intergenic L1PREC2|LINE|L1 -41618 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 363.5-4 chr18 72427352 72427910 + 1.66667 NA Intergenic L1MC4|LINE|L1 116711 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 330-17 chr5 81980142 81980488 + 1.66667 NA intron (NM_001131028, intron 2 of 8) intron (NM_001131028, intron 2 of 8) 8292 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 311.834-2 chr15 23660752 23661051 + 1.66667 NA Intergenic L1ME2|LINE|L1 -13034 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 407.001 chr1 156661257 156661953 + 1.66667 NA Intergenic Intergenic 15802 NM_006617 10763 Hs.527971 NM_006617 ENSG00000132688 NES Nbla00170 nestin protein-coding 233.334-2 chr2 65752324 65752490 + 1.66667 NA Intergenic L1ME4a|LINE|L1 -319808 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 421.667-5 chr8 65841752 65842080 + 1.66667 NA 5' UTR (NM_001242318, exon 1 of 13) 5' UTR (NM_001242318, exon 1 of 13) 148 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 616-4 chr9 15142537 15143337 + 1.66667 NA Intergenic Intergenic 107281 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 374.834-4 chr6 56360724 56361131 + 1.66667 NA intron (NM_001318752, intron 1 of 28) AluSx|SINE|Alu 33201 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 336.001-3 chrX 51619137 51619743 + 1.66667 NA promoter-TSS (NM_001355276) promoter-TSS (NM_001355276) -522 NM_001355276 347549 NM_001355276 ENSG00000224109 CENPVL3 CENPVP3 centromere protein V like 3 protein-coding 254.667-14 chr17 80721324 80721661 + 1.66667 NA intron (NM_020761, intron 4 of 33) intron (NM_020761, intron 4 of 33) 84140 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 221.334-8 chr21 19563817 19564065 + 1.66667 NA Intergenic L1MC5a|LINE|L1 335814 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 265-21 chr5 124166451 124166717 + 1.66667 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 271936 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 200.834-4 chr15 62026465 62026620 + 1.66667 NA intron (NM_001018088, intron 6 of 81) Charlie1a|DNA|hAT-Charlie 33905 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 296.501 chr4 30368027 30368316 + 1.66667 NA Intergenic Intergenic -352198 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 350.667-15 chr5 83563340 83563633 + 1.66667 NA intron (NM_001164098, intron 11 of 13) intron (NM_001164098, intron 11 of 13) -1172 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 521.834-2 chr5 126595096 126595577 + 1.66667 NA promoter-TSS (NM_001182) promoter-TSS (NM_001182) -117 NM_001202404 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 698.334 chr19 29694163 29695068 + 1.66667 NA Intergenic Intergenic 20441 NM_001282929 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 357-12 chr3 183299042 183299323 + 1.66667 NA intron (NM_015078, intron 11 of 29) intron (NM_015078, intron 11 of 29) 45929 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 463.334-3 chr5 27056034 27056366 + 1.66667 NA Intergenic Intergenic -17614 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 262.334-11 chr4 64138344 64138635 + 1.66667 NA Intergenic Intergenic 270961 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 290.667-4 chr11 29542625 29543058 + 1.66667 NA Intergenic Intergenic -51572 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 380-17 chr9 86912104 86912351 + 1.66667 NA Intergenic L1MB7|LINE|L1 35279 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 205-28 chr8 112291036 112291171 + 1.66667 NA intron (NM_001363185, intron 52 of 66) intron (NM_001363185, intron 52 of 66) -352390 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 377.667-4 chr17 55127286 55127604 + 1.66667 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -137515 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 166.667-44 chr5 7704201 7704340 + 1.66667 NA intron (NM_020546, intron 7 of 24) intron (NM_020546, intron 7 of 24) 146863 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 320.667-2 chr1 173719611 173720397 + 1.66667 NA intron (NM_014458, intron 2 of 11) FRAM|SINE|Alu 5023 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 165.167-12 chr14 72163239 72163412 + 1.66667 NA intron (NM_001370288, intron 2 of 16) LTR85b|LTR|Gypsy? 229798 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 270 chr1 53413188 53413582 + 1.66667 NA Intergenic Intergenic 26635 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 186-43 chr8 102370502 102370636 + 1.66667 NA intron (NM_001282873, intron 1 of 58) L1MA4|LINE|L1 42120 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 396-5 chr2 126016298 126016671 + 1.66667 NA Intergenic L1MB2|LINE|L1 101501 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 370-13 chr4 23446309 23446604 + 1.66667 NA Intergenic Intergenic 434836 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 301-9 chr18 27608876 27609472 + 1.66667 NA Intergenic L2a|LINE|L2 -266518 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 284-12 chr18 7081648 7081859 + 1.66667 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 36044 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 304.501 chr17 30837590 30837926 + 1.66667 NA intron (NM_024857, intron 3 of 22) MLT1A0|LTR|ERVL-MaLR 5792 NM_024857 79915 Hs.528902 NM_024857 ENSG00000176208 ATAD5 C17orf41|ELG1|FRAG1 ATPase family AAA domain containing 5 protein-coding 255.667-2 chr1 185637448 185637672 + 1.66667 NA Intergenic Intergenic -9072 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 309.667-7 chr13 19960383 19960589 + 1.66667 NA intron (NM_197968, intron 2 of 24) intron (NM_197968, intron 2 of 24) 672 NR_148365 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 318.167-5 chr14 51280497 51280714 + 1.66667 NA Intergenic L1MC4a|LINE|L1 40358 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 290.5-16 chr22 25251792 25252046 + 1.66667 NA Intergenic L1MB5|LINE|L1 32280 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 281-19 chr4 177250236 177250541 + 1.66667 NA Intergenic Intergenic -59486 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 337-12 chrX 87338213 87338788 + 1.66667 NA Intergenic Intergenic -179302 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 215.667-34 chr4 55221191 55221396 + 1.66667 NA Intergenic Intergenic -95698 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 316.333-2 chr11 25060401 25060613 + 1.66667 NA intron (NM_001009909, intron 10 of 11) MLT1A0|LTR|ERVL-MaLR 563454 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 239.333-16 chr20 47033328 47033544 + 1.66667 NA intron (NM_172110, intron 5 of 13) MER58A|DNA|hAT-Charlie -133531 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 396.666-3 chr19 28268897 28269169 + 1.66667 NA Intergenic L1M2|LINE|L1 -337655 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 304.667-4 chr10 83787425 83787791 + 1.66667 NA Intergenic L1PB4|LINE|L1 -110519 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 337.334 chr1 28274390 28274740 + 1.66667 NA intron (NM_031459, intron 7 of 9) intron (NM_031459, intron 7 of 9) 15047 NM_031459 83667 Hs.469543 NM_031459 ENSG00000130766 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 408.001-5 chr4 18689292 18689728 + 1.66667 NA Intergenic Intergenic -667635 NR_158565 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 362-5 chr10 70147267 70147598 + 1.66667 NA promoter-TSS (NR_073581) promoter-TSS (NR_073581) -692 NR_073582 219743 Hs.533655 NM_173555 ENSG00000156521 TYSND1 NET41 trypsin domain containing 1 protein-coding 232-17 chr17 66141648 66141859 + 1.66667 NA intron (NM_001353129, intron 4 of 26) L1MB1|LINE|L1 50139 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 216.667-28 chr2 174417653 174417838 + 1.66667 NA intron (NM_024583, intron 5 of 7) MIRb|SINE|MIR 22015 NM_024583 79634 Hs.470679 NM_024583 ENSG00000144306 SCRN3 SES3 secernin 3 protein-coding 360.334-2 chr20 324562 324922 + 1.66667 NA promoter-TSS (NM_006943) promoter-TSS (NM_006943) 510 NR_109990 100507459 Hs.659689 NR_109990 NRSN2-AS1 - NRSN2 antisense RNA 1 ncRNA 182.666-2 chr1 193971941 193972188 + 1.66667 NA Intergenic Intergenic 667319 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 415-4 chr2 47446290 47446662 + 1.66667 NA intron (NM_000251, intron 8 of 15) intron (NM_000251, intron 8 of 15) 43409 NM_001258281 4436 Hs.597656 NM_000251 ENSG00000095002 MSH2 COCA1|FCC1|HNPCC|HNPCC1|LCFS2|hMSH2 mutS homolog 2 protein-coding 171.833-18 chr4 44714278 44714650 + 1.66667 NA intron (NR_073095, intron 1 of 3) intron (NR_073095, intron 1 of 3) 12092 NM_138335 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 349-15 chr6 47049018 47049496 + 1.66667 NA Intergenic L1ME4b|LINE|L1 -6925 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 330-6 chr12 120632358 120632797 + 1.66667 NA Intergenic AluSx1|SINE|Alu -8042 NM_001033677 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 304.501-5 chrX 45758800 45759029 + 1.66667 NA Intergenic Intergenic -11790 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 418 chr1 185928167 185928585 + 1.66667 NA intron (NM_031935, intron 9 of 106) intron (NM_031935, intron 9 of 106) 193985 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 280.334-3 chr5 11881953 11882198 + 1.66667 NA intron (NM_001288717, intron 1 of 20) L1MA9|LINE|L1 22371 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 347.667-16 chr8 116548236 116548515 + 1.66667 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -103725 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 273.334-8 chr7 82848899 82849254 + 1.66667 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 313808 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 698.167-2 chr22 41468484 41469157 + 1.66667 NA promoter-TSS (NM_001098) promoter-TSS (NM_001098) -128 NM_032758 84844 Hs.474980 NM_032758 ENSG00000100410 PHF5A INI|Rds3|SAP14b|SF3B7|SF3b14b|bK223H9.2 PHD finger protein 5A protein-coding 368.666-6 chr5 73011099 73011425 + 1.66667 NA intron (NM_001146032, intron 6 of 24) Tigger3b|DNA|TcMar-Tigger 55221 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 222.834-7 chr4 36609011 36609206 + 1.66667 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 32792 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 257-24 chr4 7960801 7961160 + 1.66667 NA Intergenic LTR47B4|LTR|ERVL -21054 NM_001134647 60312 Hs.529369 NM_021638 ENSG00000196526 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 167.5-39 chr7 38164447 38164561 + 1.66667 NA Intergenic L1MB2|LINE|L1 -13741 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 370 chr10 36097616 36097930 + 1.66667 NA Intergenic Intergenic 319471 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 191.667-18 chr17 51824580 51824729 + 1.66667 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 334060 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 389.667-4 chr19 18919430 18919713 + 1.66667 NA promoter-TSS (NM_199444) promoter-TSS (NM_199444) -144 NM_019070 54555 Hs.143187 NM_019070 ENSG00000105671 DDX49 Dbp8|R27090_2 DEAD-box helicase 49 protein-coding 697.168 chr2 50800715 50801223 + 1.66667 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -104707 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 500.334-2 chr11 120352062 120352542 + 1.66667 NA intron (NM_015313, intron 1 of 40) intron (NM_015313, intron 1 of 40) 15889 NM_015313 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 358.167-8 chr3 9749578 9750056 + 1.66667 NA promoter-TSS (NM_016821) promoter-TSS (NM_016821) -127 NM_001354652 4968 Hs.380271 NM_002542 ENSG00000114026 OGG1 HMMH|HOGG1|MUTM|OGH1 8-oxoguanine DNA glycosylase protein-coding 303.001-2 chr5 31036336 31036556 + 1.66667 NA Intergenic Intergenic -157240 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 323.667-23 chr8 119753605 119753822 + 1.66667 NA intron (NM_003184, intron 22 of 25) intron (NM_003184, intron 22 of 25) 79128 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 391.334-7 chr8 125828965 125829336 + 1.66667 NA Intergenic L2a|LINE|L2 122047 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 413.334-4 chr10 104498699 104499115 + 1.66667 NA Intergenic Intergenic -18632 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 253.333-11 chr15 82093795 82094037 + 1.66667 NA intron (NR_120367, intron 3 of 5) Tigger7|DNA|TcMar-Tigger 5322 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 253.334 chr1 6894706 6894934 + 1.66667 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 109366 NM_001195563 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 213-43 chr8 110542646 110542876 + 1.66667 NA Intergenic MLT2B4|LTR|ERVL 484672 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 262.5-18 chr3 165679737 165680021 + 1.66667 NA Intergenic Intergenic 157544 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 445.667 chr12 8554620 8554967 + 1.66667 NA Intergenic Intergenic -13888 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 387.167 chr1 9110650 9111328 + 1.66667 NA intron (NM_024980, intron 2 of 3) intron (NM_024980, intron 2 of 3) 18113 NM_024980 80045 Hs.632367 NM_024980 ENSG00000180758 GPR157 - G protein-coupled receptor 157 protein-coding 258.334 chr14 56657951 56658157 + 1.66667 NA Intergenic Intergenic 78256 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 229.333-10 chr12 58386155 58386594 + 1.66667 NA Intergenic L2b|LINE|L2 -205328 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 261.667-10 chr13 89514767 89515002 + 1.66667 NA Intergenic L2b|LINE|L2 -14375 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 248.5-5 chr10 15088931 15089120 + 1.66667 NA promoter-TSS (NR_144471) promoter-TSS (NR_144471) -249 NM_001039844 414149 NM_001039844 ENSG00000176244 ACBD7 bA455B2.2 acyl-CoA binding domain containing 7 protein-coding 242.833-21 chr7 45248794 45249058 + 1.66667 NA Intergenic L1M4|LINE|L1 91135 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 235.833-19 chr6 27297747 27298013 + 1.66667 NA Intergenic Intergenic 14352 NM_033482 94026 Hs.729955 NM_033482 ENSG00000158553 POM121L2 POM121-L|POM121L POM121 transmembrane nucleoporin like 2 protein-coding 216.334-2 chr15 24629906 24630123 + 1.66667 NA Intergenic AluSc|SINE|Alu -45380 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 362.334-3 chr15 50934637 50934929 + 1.66667 NA intron (NM_001252127, intron 8 of 20) intron (NM_001252127, intron 8 of 20) -9346 NR_027642 100132724 Hs.730493 NR_027642 DCAF13P3 - DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo 314.167-11 chr20 18479973 18480339 + 1.66667 NA exon (NM_006466, exon 6 of 9) exon (NM_006466, exon 6 of 9) 9541 NR_036160 100422875 NR_036160 ENSG00000265137 MIR3192 mir-3192 microRNA 3192 ncRNA 249-33 chr8 101604250 101604557 + 1.66667 NA intron (NM_024915, intron 8 of 15) intron (NM_024915, intron 8 of 15) 111964 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 206.5-18 chr15 64989833 64990144 + 1.66667 NA promoter-TSS (NM_016630) promoter-TSS (NM_016630) -74 NM_016630 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 265.333-3 chr11 19396565 19396891 + 1.66667 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 46004 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 727.833-2 chr5 95861732 95862839 + 1.66667 NA Intergenic Intergenic 10053 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 265.167-13 chr8 50202257 50202637 + 1.66667 NA intron (NR_135797, intron 2 of 20) L1MC3|LINE|L1 38316 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 322.001-4 chr8 47544083 47544398 + 1.66667 NA intron (NM_001352958, intron 10 of 21) L1MD1|LINE|L1 -109848 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 360-14 chr4 175793780 175794072 + 1.66667 NA intron (NR_125901, intron 1 of 7) (TTAGTCTT)n|Simple_repeat|Simple_repeat 3619 NR_125901 101928590 Hs.599383 NR_125901 ENSG00000249106 LOC101928590 - uncharacterized LOC101928590 ncRNA 386 chr1 88990767 88991274 + 1.66667 NA intron (NM_001008661, intron 1 of 13) intron (NM_001008661, intron 1 of 13) 1609 NM_001162536 494115 Hs.481898 NM_019610 ENSG00000213516 RBMXL1 RBM1 RBMX like 1 protein-coding 546.333-3 chr8 88554651 88555384 + 1.66667 NA Intergenic L1MB7|LINE|L1 -227534 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 449.834 chr12 66145291 66145881 + 1.66667 NA intron (NM_016056, intron 5 of 6) intron (NM_016056, intron 5 of 6) 14835 NR_125724 103625681 Hs.504820 NR_125724 ENSG00000239335 LLPH-DT LLPH-AS1 LLPH divergent transcript ncRNA 781.834-2 chrX 92231778 92232619 + 1.66667 NA intron (NM_032969, intron 3 of 5) intron (NM_032969, intron 3 of 5) 396737 NM_032968 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 296.166 chr17 41963186 41963429 + 1.66667 NA intron (NR_146622, intron 11 of 11) intron (NR_146622, intron 11 of 11) -3488 NM_033133 1267 Hs.273621 NM_033133 ENSG00000173786 CNP CNP1 2',3'-cyclic nucleotide 3' phosphodiesterase protein-coding 215.833-15 chr2 229907853 229908075 + 1.66667 NA intron (NM_001348335, intron 1 of 5) MIR|SINE|MIR 13715 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 410.334-4 chr5 153654361 153654756 + 1.66667 NA intron (NM_000827, intron 4 of 15) intron (NM_000827, intron 4 of 15) 162386 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 231-17 chr2 49266665 49266932 + 1.66667 NA Intergenic Intergenic -112271 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 269.667-3 chr1 119942426 119942630 + 1.66667 NA intron (NM_001200001, intron 17 of 21) intron (NM_001200001, intron 17 of 21) -46013 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 232.5-24 chr4 134091335 134091656 + 1.66667 NA Intergenic L1ME3A|LINE|L1 110294 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 188.167-12 chr14 70809664 70809855 + 1.66667 NA promoter-TSS (NM_001284230) promoter-TSS (NM_001284230) -246 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 232-35 chr5 63266823 63267060 + 1.66667 NA Intergenic L1ME3G|LINE|L1 688122 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 432.5-6 chr6 67740375 67740793 + 1.66667 NA Intergenic L1MEf|LINE|L1 -314767 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 249.834-9 chr7 106906471 106906626 + 1.66667 NA 3' UTR (NM_002649, exon 11 of 11) 3' UTR (NM_002649, exon 11 of 11) 41069 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 238.334-3 chr12 77946325 77946617 + 1.66667 NA intron (NM_001024383, intron 3 of 39) intron (NM_001024383, intron 3 of 39) 115577 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 291.667 chr1 24413561 24414182 + 1.66667 NA promoter-TSS (NM_001199014) promoter-TSS (NM_001199014) -89 NM_001199013 90529 Hs.403187 NM_178122 ENSG00000001460 STPG1 C1orf201|MAPO2 sperm tail PG-rich repeat containing 1 protein-coding 203.333-54 chr6 160297218 160297498 + 1.66667 NA Intergenic Intergenic -38537 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 336.167-9 chr9 23842481 23842742 + 1.66667 NA intron (NM_001351456, intron 2 of 8) intron (NM_001351456, intron 2 of 8) 7990 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 251.833-5 chr18 80217415 80217744 + 1.5 NA intron (NM_032510, intron 1 of 2) L1MC3|LINE|L1 29935 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 299.5-4 chr11 14281326 14281594 + 1.5 NA intron (NM_001177314, intron 5 of 5) intron (NM_001177314, intron 5 of 5) 77025 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 301.333-15 chr22 38768739 38769050 + 1.5 NA Intergenic Intergenic -12896 NM_015374 25777 Hs.517622 NM_015374 ENSG00000100242 SUN2 UNC84B Sad1 and UNC84 domain containing 2 protein-coding 216.667-4 chr10 58435590 58435801 + 1.5 NA Intergenic Intergenic 50285 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 462.5-7 chr4 66037843 66038422 + 1.5 NA Intergenic Intergenic -238692 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 270.5-7 chr11 58197412 58197679 + 1.5 NA Intergenic L1MA8|LINE|L1 6636 NM_001004459 219958 Hs.553644 NM_001004459 ENSG00000197887 OR1S2 OR11-231 olfactory receptor family 1 subfamily S member 2 protein-coding 249-30 chr6 135253653 135253883 + 1.5 NA Intergenic MER41B|LTR|ERV1 14608 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 286.667-4 chr10 16317492 16317976 + 1.5 NA Intergenic AluSz6|SINE|Alu -119209 NM_001001484 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 259.5 chr1 17577592 17577840 + 1.5 NA intron (NR_137287, intron 1 of 29) MIRb|SINE|MIR -2837 NM_001319837 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 184-49 chr7 53359958 53360193 + 1.5 NA Intergenic Intergenic 324442 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 209.167 chr1 35469414 35469740 + 1.5 NA intron (NM_024874, intron 6 of 20) L2c|LINE|L2 87826 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 409-7 chr8 88455366 88455806 + 1.5 NA Intergenic Tigger4|DNA|TcMar-Tigger -128103 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 425.5-3 chr1 154974440 154974981 + 1.5 NA promoter-TSS (NR_036212) promoter-TSS (NR_036212) 29 NM_001826 1163 Hs.374378 NM_001826 ENSG00000173207 CKS1B CKS1|PNAS-16|PNAS-18|ckshs1 CDC28 protein kinase regulatory subunit 1B protein-coding 457.5-3 chr4 7805250 7805667 + 1.5 NA intron (NM_198595, intron 9 of 16) intron (NM_198595, intron 9 of 16) 51368 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 372.834-9 chr8 110047445 110047858 + 1.5 NA Intergenic Intergenic -71880 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 325.833-2 chr18 5424729 5425146 + 1.5 NA intron (NM_001281535, intron 11 of 21) intron (NM_001281535, intron 11 of 21) 115619 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 494.5-3 chr11 111530598 111531188 + 1.5 NA intron (NM_207430, intron 4 of 6) intron (NM_207430, intron 4 of 6) -9387 NM_001318799 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 283.333-8 chr15 92226220 92226599 + 1.5 NA Intergenic Intergenic -167472 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 253.333 chr1 68517452 68517661 + 1.5 NA intron (NR_110671, intron 1 of 2) intron (NR_110671, intron 1 of 2) -20474 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 287.5-24 chr9 135556900 135557166 + 1.5 NA Intergenic L1MD2|LINE|L1 -4723 NM_001018049 5047 Hs.532325 NM_002571 ENSG00000122133 PAEP GD|GdA|GdF|GdS|PAEG|PEP|PP14|ZIF-1 progestagen associated endometrial protein protein-coding 336.5 chr1 27096295 27096623 + 1.5 NA Intergenic AluJb|SINE|Alu 58666 NM_003047 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 357.834-2 chr10 108771980 108772250 + 1.5 NA Intergenic L1MEf|LINE|L1 -702822 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 324.001-4 chr3 138115408 138115791 + 1.5 NA promoter-TSS (NM_173543) promoter-TSS (NM_173543) 9 NM_173543 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2|PKD5 DAZ interacting zinc finger protein 1 like protein-coding 299-13 chr20 5898467 5898734 + 1.5 NA Intergenic L1MB7|LINE|L1 -12910 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 314-9 chr18 33210652 33211146 + 1.5 NA intron (NM_001308126, intron 20 of 23) intron (NM_001308126, intron 20 of 23) 229672 NM_001371121 219-3 chr10 118723149 118723637 + 1.5 NA intron (NM_153810, intron 3 of 8) L1MEg|LINE|L1 31577 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 223-25 chr2 209677479 209677664 + 1.5 NA intron (NM_001039538, intron 5 of 14) intron (NM_001039538, intron 5 of 14) -94261 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 280.167-5 chr18 7763700 7764013 + 1.5 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 196540 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 258.5-21 chr3 96088858 96089045 + 1.5 NA Intergenic Intergenic -271013 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 429.167-9 chr4 111954209 111954678 + 1.5 NA Intergenic Intergenic -191011 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 658.334 chr4 30530395 30531228 + 1.5 NA Intergenic Intergenic -189558 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 361.5-11 chr22 50617058 50617697 + 1.5 NA Intergenic AluSc8|SINE|Alu 10775 NM_001085428 410 Hs.88251 NM_000487 ENSG00000100299 ARSA ASA|MLD arylsulfatase A protein-coding 201-28 chr3 42080535 42080768 + 1.5 NA Intergenic Intergenic -6549 NR_146089 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 268.5-3 chr1 210809981 210810246 + 1.5 NA intron (NM_002238, intron 7 of 10) HAL1|LINE|L1 323261 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 426.167-6 chr2 19541050 19541753 + 1.5 NA Intergenic Intergenic -182778 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 261.667-20 chr3 185575636 185575823 + 1.5 NA Intergenic Intergenic -10566 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO specific peptidase 2 protein-coding 347.833-2 chr1 228090925 228091339 + 1.5 NA intron (NM_001024227, intron 1 of 4) intron (NM_001024227, intron 1 of 4) -6131 NR_037415 100500810 NR_037415 ENSG00000284163 MIR3620 mir-3620 microRNA 3620 ncRNA 395.999 chr10 27558158 27558657 + 1.5 NA Intergenic Intergenic 54103 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 172.833-14 chr2 101149194 101149338 + 1.5 NA intron (NM_001102426, intron 1 of 19) intron (NM_001102426, intron 1 of 19) 2181 NM_001330348 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 214.667-14 chr2 35474968 35475144 + 1.5 NA Intergenic Intergenic 3651 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 276.167-12 chr21 29077771 29078078 + 1.5 NA intron (NM_001286622, intron 1 of 8) intron (NM_001286622, intron 1 of 8) 810 NM_001286623 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 187.667-22 chr15 95485241 95485606 + 1.5 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 52330 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 362.5-10 chr5 73455223 73455562 + 1.5 NA intron (NR_126410, intron 4 of 4) L1MEh|LINE|L1 -6615 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 465.834-4 chr7 54402729 54403406 + 1.5 NA Intergenic Intergenic 72370 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 363.5-8 chr8 75465845 75466137 + 1.5 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) 58342 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 305-10 chr2 69806172 69806625 + 1.5 NA exon (NM_001365496, exon 6 of 14) exon (NM_001365496, exon 6 of 14) -23262 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 531.499-3 chr18 61901297 61901969 + 1.5 NA Intergenic Intergenic -8626 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 364.333-3 chr17 74122685 74123244 + 1.5 NA Intergenic AluYc|SINE|Alu -80714 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 225.833-16 chr20 3000982 3001370 + 1.5 NA intron (NM_080841, intron 8 of 22) intron (NM_080841, intron 8 of 22) -42446 NM_001310220 2797 Hs.129715 NM_001501 ENSG00000125787 GNRH2 GnRH-II|LH-RHII gonadotropin releasing hormone 2 protein-coding 192.833-28 chr5 19882315 19882539 + 1.5 NA intron (NM_001291957, intron 1 of 12) intron (NM_001291957, intron 1 of 12) 3845 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 182.167-26 chr6 12609461 12609695 + 1.5 NA Intergenic Intergenic -24174 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 330.5-14 chr8 86069949 86070244 + 1.5 NA promoter-TSS (NM_033126) promoter-TSS (NM_033126) -428 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 236.667-30 chr7 79891646 79891941 + 1.5 NA Intergenic LTR67B|LTR|ERVL -243038 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 246.167-7 chr14 34634023 34634286 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -4006 NM_001366519 58533 Hs.276523 NM_021249 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 343.667-6 chr12 42036957 42037373 + 1.5 NA Intergenic L1MA3|LINE|L1 107709 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 284.167-15 chrX 140733986 140734190 + 1.5 NA intron (NR_104228, intron 3 of 3) intron (NR_104228, intron 3 of 3) 24329 NR_104228 286411 Hs.317627 NR_028344 ENSG00000203930 LINC00632 ASINC long intergenic non-protein coding RNA 632 ncRNA 187-41 chr7 12767564 12767884 + 1.5 NA Intergenic Charlie19a|DNA|hAT-Charlie 80091 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 204.167-10 chr18 14920245 14920443 + 1.5 NA Intergenic Intergenic -25923 NR_104164 400644 Hs.514732 NR_104164 ENSG00000266554 LINC01443 - long intergenic non-protein coding RNA 1443 ncRNA 225.5-12 chr15 95474516 95474765 + 1.5 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 41547 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 504.5-2 chr15 67646295 67646714 + 1.5 NA intron (NM_001206804, intron 11 of 21) intron (NM_001206804, intron 11 of 21) 97410 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 203.333-31 chr2 179574900 179575369 + 1.5 NA intron (NR_148056, intron 3 of 9) L2|LINE|L2 6537 NM_001352814 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 268.667-17 chr2 18364936 18365297 + 1.5 NA Intergenic L1MA4A|LINE|L1 195537 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 247.5-49 chr9 129080838 129081128 + 1.5 NA promoter-TSS (NM_020438) promoter-TSS (NM_020438) -128 NR_072983 57171 Hs.21701 NM_020438 ENSG00000167130 DOLPP1 LSFR2 dolichyldiphosphatase 1 protein-coding 261.666-8 chr21 36745268 36745741 + 1.5 NA 3' UTR (NM_009586, exon 10 of 10) 3' UTR (NM_009586, exon 10 of 10) 46389 NM_005069 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 SIM bHLH transcription factor 2 protein-coding 187.833-27 chr7 20596750 20596944 + 1.5 NA Intergenic MamGypsy2-I|LTR|Gypsy -18820 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 241-18 chr3 89032436 89032674 + 1.5 NA Intergenic Intergenic -75066 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 170.667-50 chr8 77219285 77219692 + 1.5 NA Intergenic MIRb|SINE|MIR -218444 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 386.333-9 chr5 152514613 152515070 + 1.5 NA Intergenic Intergenic -109562 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 291-25 chr8 90954434 90954743 + 1.5 NA intron (NM_022351, intron 12 of 12) intron (NM_022351, intron 12 of 12) 30489 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 219.5-27 chr5 32619800 32620016 + 1.5 NA Intergenic Intergenic 34351 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 227.5-25 chr3 187255452 187255637 + 1.5 NA intron (NR_033519, intron 4 of 9) MLT1E2|LTR|ERVL-MaLR -35728 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 201-25 chr20 49554165 49554331 + 1.5 NA intron (NM_000961, intron 1 of 9) MER4-int|LTR|ERV1 13889 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 466.667-3 chr4 22897410 22897897 + 1.5 NA Intergenic Intergenic 183564 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 264.167-20 chr5 172059821 172060102 + 1.5 NA intron (NM_005990, intron 14 of 18) MLT1A0|LTR|ERVL-MaLR -53088 NM_033645 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 197.833-29 chr5 161681392 161681523 + 1.5 NA Intergenic Intergenic -4264 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 239.667-35 chr5 72098277 72098468 + 1.5 NA Intergenic L1ME4b|LINE|L1 -9103 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 240-2 chr1 178238164 178238537 + 1.5 NA intron (NM_170692, intron 1 of 17) L1MB8|LINE|L1 -103101 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 305.166-6 chr8 61809365 61809738 + 1.5 NA Intergenic Intergenic -80288 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 291-21 chr5 72138233 72138450 + 1.5 NA intron (NM_005909, intron 2 of 6) L1ME4a|LINE|L1 30866 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 272.5-7 chr14 74709892 74710254 + 1.5 NA intron (NM_001039479, intron 1 of 19) intron (NM_001039479, intron 1 of 19) 3007 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 286.167-4 chr10 24429196 24429418 + 1.5 NA intron (NM_019590, intron 3 of 20) L1M6B|LINE|L1 -20107 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 399.5-9 chr8 136069743 136070298 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -460778 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 204.5-9 chr12 56364645 56364849 + 1.5 NA Intergenic Intergenic -1890 NM_001638 319 Hs.534302 NM_001638 ENSG00000175336 APOF Apo-F|LTIP apolipoprotein F protein-coding 397-17 chr6 73088671 73089172 + 1.5 NA intron (NM_001160132, intron 5 of 13) intron (NM_001160132, intron 5 of 13) 54593 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 250-5 chr15 24773813 24774052 + 1.5 NA Intergenic Intergenic -49676 NM_001349455 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 267.5-29 chr20 54062907 54063188 + 1.5 NA intron (NM_001366297, intron 1 of 8) intron (NM_001366297, intron 1 of 8) -4027 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 177.334-7 chr4 54211126 54211269 + 1.5 NA Intergenic L1ME3A|LINE|L1 -18096 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 166-52 chr3 186467642 186467842 + 1.5 NA intron (NR_033844, intron 3 of 7) intron (NR_033844, intron 3 of 7) 25919 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 246.499 chr10 59680387 59680660 + 1.5 NA intron (NM_194298, intron 2 of 5) intron (NM_194298, intron 2 of 5) 29368 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 299.5-19 chr6 152486073 152486360 + 1.5 NA intron (NM_182961, intron 12 of 145) AluSc|SINE|Alu 105686 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 290.5-5 chr13 23058922 23059154 + 1.5 NA Intergenic L1MD2|LINE|L1 -121883 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 185.333-21 chr18 11163646 11164088 + 1.5 NA Intergenic Intergenic -15105 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 440.5 chr11 4608232 4608626 + 1.5 NA promoter-TSS (NM_001304496) promoter-TSS (NM_001304496) -198 NM_018073 55128 Hs.523438 NM_018073 ENSG00000167333 TRIM68 GC109|RNF137|SS-56|SS56 tripartite motif containing 68 protein-coding 414.5 chr1 156319587 156320044 + 1.5 NA intron (NM_001008800, intron 5 of 11) intron (NM_001008800, intron 5 of 11) -17499 NM_144627 128229 Hs.534539 NM_144627 ENSG00000163467 TSACC C1orf182|SIP|SSTK-IP TSSK6 activating cochaperone protein-coding 678.499 chr9 124617290 124617972 + 1.5 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) -40805 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 389.167-5 chr5 7907015 7907379 + 1.5 NA Intergenic L1MA4|LINE|L1 38049 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 202.333-28 chr4 121379527 121379929 + 1.5 NA intron (NM_198179, intron 1 of 5) intron (NM_198179, intron 1 of 5) 1290 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 253.333-18 chr3 36718987 36719543 + 1.5 NA intron (NM_033403, intron 3 of 4) intron (NM_033403, intron 3 of 4) 20596 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 318.834 chr10 19342002 19342324 + 1.5 NA intron (NM_001142308, intron 24 of 39) intron (NM_001142308, intron 24 of 39) 293362 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 264.167-5 chr10 77169164 77169514 + 1.5 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 28508 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 204.333-9 chr12 15539865 15540277 + 1.5 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -6540 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 263.333-14 chr2 133010929 133011288 + 1.5 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 95551 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 232-19 chr2 42877807 42877995 + 1.5 NA Intergenic Intergenic -85318 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 180-30 chr18 56122188 56122424 + 1.5 NA non-coding (NR_040025, exon 3 of 9) non-coding (NR_040025, exon 3 of 9) 15230 NR_040025 100505474 Hs.662191 NR_040025 ENSG00000267712 LINC01539 - long intergenic non-protein coding RNA 1539 ncRNA 414.667-2 chr10 83992366 83993051 + 1.5 NA Intergenic Intergenic -146801 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 213.5-32 chr8 129722204 129722504 + 1.5 NA Intergenic Intergenic -42115 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 267.5-36 chr5 115045488 115045729 + 1.5 NA Intergenic Intergenic 124300 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 309.667-13 chr20 7030106 7030397 + 1.5 NA Intergenic L3|LINE|CR1 223951 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 644.5 chr11 114035852 114036659 + 1.5 NA Intergenic CpG -23456 NM_001354750 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 273.5-8 chr12 112225797 112226179 + 1.5 NA intron (NM_001109662, intron 44 of 75) L1MC5|LINE|L1 -62667 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 298.833-4 chr12 24404878 24405146 + 1.5 NA intron (NM_152989, intron 2 of 17) MLT1C|LTR|ERVL-MaLR 157479 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 317.833-13 chr5 148826178 148826720 + 1.5 NA promoter-TSS (NM_000024) promoter-TSS (NM_000024) -144 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 236.5-21 chr2 209173510 209173703 + 1.5 NA Intergenic Intergenic -250441 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 199-10 chr12 71659710 71659963 + 1.5 NA intron (NM_144982, intron 1 of 34) intron (NM_144982, intron 1 of 34) 4012 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 536-2 chr10 70233135 70233897 + 1.5 NA promoter-TSS (NM_021129) promoter-TSS (NM_021129) -87 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 250-2 chr10 39497630 39497901 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 801169 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 475.5 chr12 52503489 52504110 + 1.5 NA Intergenic L1MC1|LINE|L1 -10542 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 349.167-11 chr9 95926804 95927159 + 1.5 NA intron (NM_020207, intron 9 of 18) L1MC2|LINE|L1 50973 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 211.5-25 chr19 48123967 48124147 + 1.5 NA intron (NR_135500, intron 21 of 27) intron (NR_135500, intron 21 of 27) -13205 NM_001159322 8605 Hs.631562 NM_003706 ENSG00000105499 PLA2G4C CPLA2-gamma phospholipase A2 group IVC protein-coding 224.5-41 chr8 119868117 119868607 + 1.5 NA Intergenic LTR8|LTR|ERV1 -5293 NM_001283012 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 323-7 chr15 63276891 63277213 + 1.5 NA promoter-TSS (NM_001145646) promoter-TSS (NM_001145646) -498 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 350.167-8 chr20 3218444 3218978 + 1.5 NA intron (NM_001324240, intron 6 of 6) intron (NM_001324240, intron 6 of 6) 9213 NM_033453 3704 Hs.415299 NM_033453 ENSG00000125877 ITPA C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3 inosine triphosphatase protein-coding 556.667-3 chr9 72873241 72873748 + 1.5 NA intron (NR_121181, intron 1 of 3) intron (NR_121181, intron 1 of 3) 615 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 220-23 chr5 55712309 55712604 + 1.5 NA promoter-TSS (NM_173514) promoter-TSS (NM_173514) -121 NM_001349384 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 341.667-10 chr20 28955199 28955503 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -125039 NR_132316 102723316 NR_132316 FRG1DP - FSHD region gene 1 family member D, pseudogene pseudo 273-19 chr3 77468219 77468507 + 1.5 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 370351 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 223-29 chr22 22045627 22045828 + 1.5 NA Intergenic Intergenic -1793 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 361.5-9 chr2 14345091 14345599 + 1.5 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 55613 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 297.5-12 chr17 67677926 67678429 + 1.5 NA intron (NM_012417, intron 8 of 8) AluJo|SINE|Alu -39656 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 208.833-28 chr8 86612437 86612650 + 1.5 NA intron (NM_019098, intron 13 of 17) intron (NM_019098, intron 13 of 17) 98108 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 378 chr1 75310595 75310884 + 1.5 NA intron (NM_001320283, intron 2 of 21) A-rich|Low_complexity|Low_complexity 176351 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 514.167-2 chr18 37578552 37579096 + 1.5 NA Intergenic Intergenic -13026 NM_001353733 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 331.166-2 chr6 48939289 48939767 + 1.5 NA Intergenic Intergenic 523725 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 233.167-2 chr1 85276622 85276953 + 1.5 NA promoter-TSS (NM_003921) promoter-TSS (NM_003921) -155 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 250-35 chr7 49259042 49259333 + 1.5 NA Intergenic Intergenic 334640 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 229.167-7 chr10 46031954 46032378 + 1.5 NA Intergenic Intergenic -1452 NM_001145260 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 264-11 chr12 67516826 67517246 + 1.5 NA Intergenic Intergenic -3046 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LINC02408 - long intergenic non-protein coding RNA 2408 ncRNA 194-15 chr13 105425835 105426007 + 1.5 NA Intergenic Intergenic -39946 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 508.667-4 chr9 106368951 106369447 + 1.5 NA Intergenic L1M4|LINE|L1 -231729 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 183.833-21 chr6 159043888 159044053 + 1.5 NA intron (NM_138810, intron 3 of 7) intron (NM_138810, intron 3 of 7) 1021 NM_054114 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 172.5-2 chr1 224076473 224076690 + 1.5 NA Intergenic Intergenic -37530 NM_015176 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 262.167-8 chr17 76460483 76460666 + 1.5 NA intron (NM_001166579, intron 2 of 6) FLAM_C|SINE|Alu -7029 NR_110548 15 Hs.431417 NM_001088 ENSG00000129673 AANAT DSPS|SNAT aralkylamine N-acetyltransferase protein-coding 332.333-11 chr6 51350559 51351096 + 1.5 NA Intergenic Intergenic -271043 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 302.667-7 chr4 47221123 47221476 + 1.5 NA intron (NM_000812, intron 4 of 8) L2c|LINE|L2 189732 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 326.5-2 chr12 15765369 15765731 + 1.5 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 23838 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 167.5-31 chr5 74587592 74587786 + 1.5 NA Intergenic Intergenic -50713 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 335.5-7 chr5 124599625 124600027 + 1.5 NA Intergenic Intergenic 145286 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 227.5-12 chr13 55731505 55731753 + 1.5 NA Intergenic MLT2B3|LTR|ERVL 557175 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 324-6 chr14 86661548 86661885 + 1.5 NA Intergenic MLT1N2|LTR|ERVL-MaLR -244062 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 211.667-19 chr2 102037865 102038016 + 1.5 NA Intergenic Intergenic -32450 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 259.833-14 chr4 139295839 139296119 + 1.5 NA intron (NM_001184987, intron 1 of 4) intron (NM_001184987, intron 1 of 4) 5231 NM_001184991 4717 Hs.84549 NM_002494 ENSG00000109390 NDUFC1 KFYI NADH:ubiquinone oxidoreductase subunit C1 protein-coding 253.167-22 chr7 93580732 93581059 + 1.5 NA Intergenic Intergenic -6165 NM_001164737 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 221.5-9 chr12 132630742 132630994 + 1.5 NA intron (NM_006231, intron 45 of 48) L1ME1|LINE|L1 12092 NM_170682 22953 Hs.258580 NM_012226 ENSG00000187848 P2RX2 DFNA41|P2X2 purinergic receptor P2X 2 protein-coding 298.666-2 chr1 44005581 44005872 + 1.5 NA intron (NR_048548, intron 4 of 12) L2c|LINE|L2 11437 NR_048548 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 324.167-8 chr13 75917802 75918178 + 1.5 NA Intergenic MIRc|SINE|MIR 17142 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 255.5-20 chr2 168347838 168348369 + 1.5 NA Intergenic L1MEd|LINE|L1 -100508 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 216.833-3 chr1 161502197 161502393 + 1.5 NA Intergenic Intergenic -3162 NM_021642 2212 Hs.352642 NM_021642 ENSG00000143226 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG receptor IIa protein-coding 281.833-12 chr5 43480026 43480300 + 1.5 NA intron (NM_022483, intron 1 of 2) intron (NM_022483, intron 1 of 2) 3702 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 291.5-21 chr22 29170152 29170407 + 1.5 NA Intergenic AluJo|SINE|Alu -35617 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 377.5-8 chr7 14898662 14899057 + 1.5 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) 3892 NM_001350724 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 248.667-13 chr17 72435386 72435770 + 1.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 92767 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 264.833-14 chr2 76863808 76864186 + 1.5 NA intron (NR_146416, intron 1 of 1) L3|LINE|CR1 -121968 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 292.334-4 chr20 8481480 8481739 + 1.5 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 232905 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 344.5-6 chr15 56490534 56490993 + 1.5 NA Intergenic Intergenic -25626 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 271-31 chr7 86295214 86295540 + 1.5 NA Intergenic Intergenic -348532 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 255.333-25 chr7 33278055 33278302 + 1.5 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 148614 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 177.333-29 chr5 109161116 109161457 + 1.5 NA intron (NR_146155, intron 17 of 19) L1PA13|LINE|L1 165083 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 462.834 chr1 61741579 61742162 + 1.5 NA promoter-TSS (NM_176877) promoter-TSS (NM_176877) -610 NM_001350145 10207 Hs.478125 NM_005799 ENSG00000132849 PATJ Cipp|INADL|InaD-like|hINADL PATJ crumbs cell polarity complex component protein-coding 347.834-8 chr5 26268449 26268956 + 1.5 NA Intergenic L1ME3|LINE|L1 769884 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 179.167-5 chr1 236609423 236609545 + 1.5 NA Intergenic Intergenic -4968 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 372.834-4 chr2 69138380 69139111 + 1.5 NA intron (NM_032208, intron 12 of 17) intron (NM_032208, intron 12 of 17) 35063 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 354.167-2 chr10 27446198 27446450 + 1.5 NA Intergenic Intergenic -31956 NM_001034842 374308 Hs.631832 NM_001034842 ENSG00000182077 PTCHD3 PTR patched domain containing 3 protein-coding 170-55 chr8 134647644 134647825 + 1.5 NA intron (NM_020863, intron 2 of 15) L1M3|LINE|L1 48821 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 260.167-11 chr17 30892934 30893193 + 1.5 NA intron (NM_024857, intron 20 of 22) intron (NM_024857, intron 20 of 22) 13175 NM_024683 79736 Hs.317340 NM_024683 ENSG00000172171 TEFM C17orf42 transcription elongation factor, mitochondrial protein-coding 166.667-21 chr17 8657205 8657501 + 1.5 NA Intergenic Intergenic -26592 NM_001256095 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 513.167-3 chr11 22244929 22245446 + 1.5 NA intron (NM_001142649, intron 9 of 21) L1PA16|LINE|L1 52011 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 440.833-3 chr21 28529122 28529637 + 1.5 NA Intergenic Intergenic -9939 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 318.333-9 chr5 175532861 175533218 + 1.5 NA Intergenic L1ME4b|LINE|L1 54479 NM_001322980 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 191.167-9 chr13 112032608 112032843 + 1.5 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -34424 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 378.334-6 chr6 106084876 106085139 + 1.5 NA Intergenic Intergenic -1329 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 602.001 chr12 49288262 49288726 + 1.5 NA Intergenic Intergenic -6653 NM_006262 5630 Hs.37044 NM_006262 ENSG00000135406 PRPH NEF4|PRPH1 peripherin protein-coding 292.834-9 chr9 91954602 91954875 + 1.5 NA Intergenic L2c|LINE|L2 -4510 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 240.833-14 chrX 139501936 139502096 + 1.5 NA Intergenic L1MEf|LINE|L1 -28720 NM_001313913 2158 Hs.522798 NM_000133 ENSG00000101981 F9 F9 p22|FIX|HEMB|P19|PTC|THPH8 coagulation factor IX protein-coding 193.833-12 chr17 9906169 9906538 + 1.5 NA Intergenic AluSx3|SINE|Alu -1082 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 452.167-2 chr15 71752690 71753290 + 1.5 NA intron (NM_001286429, intron 8 of 11) intron (NM_001286429, intron 8 of 11) -57564 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 274.667-18 chr4 35856686 35856961 + 1.5 NA Intergenic Intergenic 387116 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 270-6 chr10 114532916 114533174 + 1.5 NA intron (NM_001352440, intron 6 of 20) intron (NM_001352440, intron 6 of 20) -6132 NM_001322899 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 249.833-6 chr15 65829355 65829599 + 1.5 NA Intergenic Intergenic -37184 NM_001144823 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 248.833-12 chr2 43973020 43973302 + 1.5 NA intron (NM_133259, intron 11 of 37) intron (NM_133259, intron 11 of 37) 22828 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 199.333-15 chr13 88631678 88631873 + 1.5 NA Intergenic Charlie2b|DNA|hAT-Charlie 4922 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 213-41 chr8 23453070 23453255 + 1.5 NA intron (NM_004901, intron 1 of 12) intron (NM_004901, intron 1 of 12) 4485 NM_004901 9583 Hs.444389 NM_004901 ENSG00000197217 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 319.5-6 chr14 77654913 77655203 + 1.5 NA Intergenic Intergenic -38291 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 224.5-23 chr2 66127547 66127730 + 1.5 NA Intergenic Intergenic 230690 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 215-7 chr11 62855927 62856383 + 1.5 NA promoter-TSS (NR_152575) promoter-TSS (NR_152575) 46 NM_001012662 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 505-3 chr2 42512817 42513450 + 1.5 NA intron (NM_001282755, intron 2 of 17) intron (NM_001282755, intron 2 of 17) 18564 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 277.5-6 chr16 28326996 28327528 + 1.5 NA Intergenic MamGypLTR3a|LTR|Gypsy 34737 NM_001024401 388228 Hs.97837 NM_001024401 ENSG00000188322 SBK1 SBK SH3 domain binding kinase 1 protein-coding 223-11 chr14 85048393 85048677 + 1.5 NA Intergenic Intergenic -223397 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 265-27 chr8 85338163 85338427 + 1.5 NA exon (NM_001128829, exon 4 of 9) exon (NM_001128829, exon 4 of 9) 3419 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 182.333-8 chr15 33370327 33370595 + 1.5 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 59494 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 347.001 chr16 22948865 22949206 + 1.5 NA Intergenic (TTCA)n|Simple_repeat|Simple_repeat 134873 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 386.667-11 chr8 26318068 26318499 + 1.5 NA intron (NM_001177591, intron 2 of 9) intron (NM_001177591, intron 2 of 9) 25067 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 397.5-9 chr5 67004388 67004724 + 1.5 NA promoter-TSS (NM_001290227) promoter-TSS (NM_001290227) -99 NM_001297651 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 281.5-2 chr1 235805696 235805919 + 1.5 NA exon (NM_001301365, exon 6 of 53) exon (NM_001301365, exon 6 of 53) 47253 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 247.5-48 chr9 28047598 28047833 + 1.5 NA intron (NM_152570, intron 5 of 6) MIR|SINE|MIR -473849 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 343.666 chr4 37857314 37857931 + 1.5 NA intron (NM_018290, intron 13 of 13) Tigger15a|DNA|TcMar-Tigger 30936 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 258-37 chr8 94916364 94916557 + 1.5 NA intron (NM_001354534, intron 1 of 8) intron (NM_001354534, intron 1 of 8) 20661 NR_148903 137682 Hs.435500 NM_152416 ENSG00000156170 NDUFAF6 C8orf38|MC1DN17 NADH:ubiquinone oxidoreductase complex assembly factor 6 protein-coding 331-12 chr18 7735517 7735831 + 1.5 NA intron (NM_002845, intron 1 of 30) MER4D|LTR|ERV1 168358 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 212.833-18 chr4 120056483 120056671 + 1.5 NA 3' UTR (NM_002358, exon 5 of 5) 3' UTR (NM_002358, exon 5 of 5) 10271 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 318.667-9 chr5 26703759 26704169 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 334622 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 360.333-10 chr6 99242060 99242349 + 1.5 NA Intergenic Intergenic 107470 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 285.5-9 chr15 71520485 71520822 + 1.5 NA intron (NM_024817, intron 6 of 16) MIR|SINE|MIR -26583 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 301.167-11 chr3 88044914 88045239 + 1.5 NA Intergenic AluSq4|SINE|Alu 13920 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 392.333-2 chr18 68714762 68715214 + 1.5 NA promoter-TSS (NM_001093729) promoter-TSS (NM_001093729) 120 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 343.166-2 chr10 114879544 114880022 + 1.5 NA intron (NM_001135051, intron 16 of 16) AluJb|SINE|Alu 58003 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 331.5-6 chr16 61436290 61436607 + 1.5 NA Intergenic Intergenic -380682 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 313.5-16 chr3 25789990 25790255 + 1.5 NA promoter-TSS (NM_017897) promoter-TSS (NM_017897) 32 NM_017897 54995 Hs.55781 NM_017897 ENSG00000151093 OXSM CEM1|FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 192.5-55 chr9 107214936 107215189 + 1.5 NA Intergenic LTR104_Mam|LTR|Gypsy -68217 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 249.833-12 chr2 76671535 76671835 + 1.5 NA Intergenic L1ME4a|LINE|L1 -314280 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 203.5-32 chr4 354279 354508 + 1.5 NA intron (NM_003441, intron 3 of 3) intron (NM_003441, intron 3 of 3) 4236 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 382.334-5 chr7 41158352 41158851 + 1.5 NA Intergenic L1MEh|LINE|L1 56997 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 282.666-2 chr16 59127805 59128082 + 1.5 NA Intergenic L1MD3|LINE|L1 -393627 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 247.833-8 chr18 1267068 1267279 + 1.5 NA Intergenic Intergenic 92456 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 202.333-12 chr12 7435118 7435378 + 1.5 NA intron (NM_001297650, intron 2 of 19) L1ME3F|LINE|L1 8937 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 276.333-2 chr12 15267467 15267682 + 1.5 NA Intergenic MIR3|SINE|MIR -46157 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 341.667-15 chr7 149126281 149126673 + 1.5 NA promoter-TSS (NM_020781) promoter-TSS (NM_020781) 69 NM_020781 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 188.167-26 chr4 33900626 33900766 + 1.5 NA intron (NR_125902, intron 4 of 4) intron (NR_125902, intron 4 of 4) 139197 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 292-9 chr14 64472093 64472435 + 1.5 NA 3' UTR (NM_004857, exon 2 of 2) 3' UTR (NM_004857, exon 2 of 2) 6765 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 332-29 chr9 97606983 97607372 + 1.5 NA intron (NM_139246, intron 6 of 9) intron (NM_139246, intron 6 of 9) 26191 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 299.167-10 chr14 71427868 71428320 + 1.5 NA intron (NM_015556, intron 4 of 26) AluSx|SINE|Alu -10845 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 220.5-38 chr7 9193280 9193523 + 1.5 NA Intergenic Intergenic -440869 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 277.667-5 chr12 3225617 3226002 + 1.5 NA intron (NM_001168320, intron 2 of 7) intron (NM_001168320, intron 2 of 7) 140313 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 390.833 chr5 124649601 124649996 + 1.5 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 95314 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 207.167-16 chr3 83717122 83717492 + 1.5 NA Intergenic Intergenic 1152268 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 266.5-4 chr1 168665585 168666063 + 1.5 NA Intergenic Intergenic 63382 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 332-11 chr18 42303907 42304156 + 1.5 NA intron (NR_046457, intron 4 of 6) MIRc|SINE|MIR 117363 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 217-34 chr7 103296645 103296884 + 1.5 NA promoter-TSS (NM_004279) promoter-TSS (NM_004279) -671 NM_004279 9512 Hs.184211 NM_004279 ENSG00000105819 PMPCB Beta-MPP|MPP11|MPPB|MPPP52|P-52 peptidase, mitochondrial processing beta subunit protein-coding 236.667-25 chr6 27046601 27046788 + 1.5 NA Intergenic L1MDa|LINE|L1 -26388 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 299.5-3 chr1 229321085 229321521 + 1.5 NA 3' UTR (NM_145257, exon 4 of 4) 3' UTR (NM_145257, exon 4 of 4) 16921 NM_006542 10638 Hs.296169 NM_006542 ENSG00000213029 SPHAR - S-phase response (cyclin related) protein-coding 343.5-14 chr6 75143118 75143636 + 1.5 NA exon (NM_004370, exon 26 of 66) exon (NM_004370, exon 26 of 66) -14595 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 190.5-12 chr14 37151673 37151853 + 1.5 NA intron (NM_001171170, intron 1 of 10) MIRb|SINE|MIR -20263 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 371.667-9 chr7 46411619 46411915 + 1.5 NA Intergenic MER21A|LTR|ERVL 285355 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 432-3 chr3 21867578 21868028 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie -89336 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 382.667-2 chr1 107153029 107153332 + 1.5 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 5111 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 223.333-19 chr19 27787345 27787588 + 1.5 NA Intergenic L1M4c|LINE|L1 -5965 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 313.5-5 chr12 47687327 47687780 + 1.5 NA intron (NM_024604, intron 8 of 16) intron (NM_024604, intron 8 of 16) 18477 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 184.333-34 chr6 38966531 38966752 + 1.5 NA intron (NM_001371, intron 81 of 91) L1MB7|LINE|L1 -13534 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 279.167-7 chr17 80776450 80776678 + 1.5 NA intron (NM_020761, intron 6 of 33) AluSg|SINE|Alu 29068 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 245.833-12 chr17 13562016 13562202 + 1.5 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) -18463 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 327.833-6 chr22 49701971 49702480 + 1.5 NA Intergenic Intergenic -44706 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 577.666 chr1 189429382 189429946 + 1.5 NA Intergenic LTR41|LTR|ERVL 1046346 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 257.667-4 chr12 52023340 52023553 + 1.5 NA intron (NM_001202233, intron 1 of 7) CpG 614 NM_001202233 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 296.667-11 chr2 101516229 101516512 + 1.5 NA Intergenic AluJo|SINE|Alu -41258 NM_001367509 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 175.833-3 chr1 167923314 167923452 + 1.5 NA intron (NM_001143674, intron 3 of 5) L1MB3|LINE|L1 -9249 NM_018417 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 319-8 chr22 27331883 27332315 + 1.5 NA Intergenic Intergenic 21448 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 442.166-2 chr7 88350327 88350639 + 1.5 NA Intergenic Intergenic -43589 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 646.667-3 chr4 125244461 125245540 + 1.5 NA Intergenic Intergenic -71412 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 210-33 chr4 156852685 156852881 + 1.5 NA intron (NM_016205, intron 1 of 5) MLT1E3|LTR|ERVL-MaLR 119016 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 426.666 chr15 78709284 78709808 + 1.5 NA Intergenic Intergenic -42491 NR_036495 646938 Hs.449783 NR_036495 ENSG00000238166 LOC646938 - TBC1 domain family member 2B pseudogene pseudo 407.667-5 chr10 95160421 95160716 + 1.5 NA Intergenic L1MD1|LINE|L1 -33632 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 224-28 chr20 22325677 22325927 + 1.5 NA Intergenic Intergenic -43001 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 165.333-16 chr13 104858033 104858146 + 1.5 NA Intergenic L1MEd|LINE|L1 -607778 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 314.833-3 chr10 133058704 133059027 + 1.5 NA Intergenic Intergenic 27832 NR_111905 100128127 Hs.694139 NR_111905 ADGRA1-AS1 GPR123-AS1 adhesion G protein-coupled receptor A1 antisense RNA 1 ncRNA 332.334-2 chr11 72103383 72103839 + 1.5 NA promoter-TSS (NM_017907) promoter-TSS (NM_017907) -314 NM_017907 55004 Hs.731528 NM_017907 ENSG00000149357 LAMTOR1 C11orf59|PDRO|Ragulator1|p18|p27RF-Rho late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding 177.5-33 chr21 42330015 42330159 + 1.5 NA Intergenic Intergenic -14491 NM_003226 7033 Hs.82961 NM_003226 ENSG00000160180 TFF3 ITF|P1B|TFI trefoil factor 3 protein-coding 347.5-2 chr14 61525170 61525541 + 1.5 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 44839 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 246.167-18 chr2 73128225 73128544 + 1.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -15436 NM_001371272 615.333-4 chr17 27599576 27600269 + 1.5 NA intron (NM_014238, intron 10 of 20) Tigger3b|DNA|TcMar-Tigger -31266 NM_001330163 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 234.5-33 chr4 103032489 103032915 + 1.5 NA intron (NM_001370207, intron 9 of 10) LTR41|LTR|ERVL -12997 NR_047515 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 622 chr10 18214778 18215574 + 1.5 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) -45546 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 241.5-21 chr7 21462132 21462419 + 1.5 NA intron (NM_003112, intron 3 of 5) intron (NM_003112, intron 3 of 5) -8783 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 260.667-37 chr4 16443508 16443805 + 1.5 NA Intergenic Intergenic 216993 NR_027696 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 256.167-10 chr17 9835104 9835544 + 1.5 NA intron (NM_004246, intron 2 of 12) intron (NM_004246, intron 2 of 12) 9400 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 275.333-4 chr12 15584470 15585089 + 1.5 NA intron (NM_030671, intron 11 of 13) intron (NM_030671, intron 11 of 13) 38168 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 325.5-11 chr2 99733906 99734273 + 1.5 NA intron (NM_001025108, intron 9 of 23) L1ME3D|LINE|L1 -244072 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 237.833-19 chr8 126296432 126296717 + 1.5 NA Intergenic LTR37A|LTR|ERV1 -28921 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 207.5-39 chr9 90659738 90659902 + 1.5 NA Intergenic L1PA13|LINE|L1 -16996 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 242.5-29 chr20 8155857 8156158 + 1.5 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 23741 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 165.5-17 chr16 59179451 59179672 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie -445245 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 238.167-21 chr3 155806570 155806828 + 1.5 NA promoter-TSS (NM_001308229) promoter-TSS (NM_001308229) -412 NM_173657 285315 Hs.350846 NM_173657 ENSG00000174928 C3orf33 AC3-33 chromosome 3 open reading frame 33 protein-coding 300.833-11 chr7 157309868 157310486 + 1.5 NA Intergenic Intergenic -26827 NM_001363676 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 393.333-5 chr5 45774554 45774998 + 1.5 NA Intergenic Intergenic -78396 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 245.333-28 chr7 145044045 145044361 + 1.5 NA Intergenic Intergenic -208150 NM_001350886 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 307-7 chr17 73248031 73248265 + 1.5 NA TTS (NM_001129885) TTS (NM_001129885) 13732 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 378.167-5 chr22 24835008 24835832 + 1.5 NA intron (NM_001098498, intron 2 of 23) L2a|LINE|L2 29199 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 373.166-3 chr18 3967311 3967758 + 1.5 NA intron (NR_102696, intron 1 of 4) MER5A|DNA|hAT-Charlie 5181 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 196.833-6 chr14 81003803 81004006 + 1.5 NA intron (NM_001142626, intron 1 of 8) L2c|LINE|L2 48283 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 411.833-2 chr15 73873879 73874324 + 1.5 NA intron (NM_001286434, intron 1 of 9) intron (NM_001286434, intron 1 of 9) 537 NM_001286434 161514 Hs.124512 NM_153356 ENSG00000167139 TBC1D21 MgcRabGAP TBC1 domain family member 21 protein-coding 316.5-7 chr13 75549439 75549745 + 1.5 NA promoter-TSS (NM_001287394) promoter-TSS (NM_001287394) 112 NM_001270952 7347 Hs.162241 NM_006002 ENSG00000118939 UCHL3 UCH-L3 ubiquitin C-terminal hydrolase L3 protein-coding 430.833-4 chr2 228106009 228106472 + 1.5 NA intron (NM_030623, intron 3 of 10) intron (NM_030623, intron 3 of 10) 75405 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 340.334-6 chr15 94171099 94171449 + 1.5 NA Intergenic Intergenic -63336 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 237-21 chr2 194819470 194819686 + 1.5 NA Intergenic Intergenic 88983 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 260.5-7 chr13 101061850 101062032 + 1.5 NA intron (NM_001350749, intron 41 of 43) intron (NM_001350749, intron 41 of 43) -117577 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 345.5-9 chr19 55162636 55162958 + 1.5 NA intron (NM_001256716, intron 4 of 11) MER2|DNA|TcMar-Tigger 3816 NM_001256715 352909 Hs.351582 NM_178837 ENSG00000167646 DNAAF3 C19orf51|CILD2|DAB1|PCD|PF22 dynein axonemal assembly factor 3 protein-coding 362.5-14 chr7 93761680 93762049 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 44936 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 194.333-12 chr12 74739847 74740112 + 1.5 NA Intergenic L1M3|LINE|L1 202144 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 204-25 chr22 24289121 24289305 + 1.5 NA intron (NM_015330, intron 2 of 16) intron (NM_015330, intron 2 of 16) 18382 NM_015330 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 333-14 chr9 83402329 83402657 + 1.5 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) 65249 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 493.833 chr10 115129759 115130231 + 1.5 NA intron (NM_001276282, intron 5 of 7) intron (NM_001276282, intron 5 of 7) 36630 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 383-2 chr12 7990607 7990912 + 1.5 NA Intergenic AluSx1|SINE|Alu -41957 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 334.333-3 chr1 109458824 109459239 + 1.5 NA Intergenic L1MD|LINE|L1 -7515 NM_001040709 284612 Hs.528366 NM_001006603 ENSG00000143028 SYPL2 MG29 synaptophysin like 2 protein-coding 228.833-14 chr4 47223759 47223930 + 1.5 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 192277 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 399-9 chr18 44085858 44086364 + 1.5 NA Intergenic L1MC1|LINE|L1 445586 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 258.167-11 chr16 9160271 9160605 + 1.5 NA Intergenic Intergenic 68794 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 236.833-16 chr20 59717530 59717814 + 1.5 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) -3538 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 272.834 chr1 53949020 53949244 + 1.5 NA intron (NM_001256409, intron 2 of 8) intron (NM_001256409, intron 2 of 8) 2782 NM_052940 115353 Hs.40094 NM_052940 ENSG00000116212 LRRC42 dJ167A19.4 leucine rich repeat containing 42 protein-coding 310-28 chr7 13385101 13385402 + 1.5 NA Intergenic Intergenic 601263 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 285.167-3 chr10 71870831 71871157 + 1.5 NA Intergenic Intergenic -19743 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 244.667-23 chr3 65118721 65119019 + 1.5 NA Intergenic Intergenic -430870 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 290.167-5 chr13 30113366 30113651 + 1.5 NA Intergenic Intergenic -4633 NR_046998 100874146 Hs.574116 NR_046998 ENSG00000224511 LINC00365 - long intergenic non-protein coding RNA 365 ncRNA 240.167-19 chr6 26159599 26159765 + 1.5 NA intron (NM_138720, intron 1 of 1) intron (NM_138720, intron 1 of 1) 1561 NM_021063 3017 Hs.591797 NM_021063 ENSG00000158373 HIST1H2BD H2B.1B|H2B/a|H2B/b|H2B/g|H2B/h|H2B/k|H2B/l|H2BFA|H2BFB|H2BFG|H2BFH|H2BFK|H2BFL|HIRIP2|HIST1H2BC|HIST1H2BE|HIST1H2BF|HIST1H2BG|HIST1H2BI|dJ221C16.6 histone cluster 1 H2B family member d protein-coding 206.167-17 chr4 1911688 1911996 + 1.5 NA intron (NM_133334, intron 2 of 8) intron (NM_133334, intron 2 of 8) 11216 NM_133334 7468 Hs.113876 NM_007331 ENSG00000109685 NSD2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 nuclear receptor binding SET domain protein 2 protein-coding 288-21 chr5 77016114 77016385 + 1.5 NA Intergenic Intergenic -14155 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 344.5-14 chr7 23690361 23690846 + 1.5 NA intron (NM_199136, intron 3 of 6) intron (NM_199136, intron 3 of 6) 10404 NM_199136 340277 Hs.592178 NM_199136 ENSG00000188732 FAM221A C7orf46 family with sequence similarity 221 member A protein-coding 190-51 chr8 107022216 107022468 + 1.5 NA Intergenic L1MA8|LINE|L1 -252098 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 359.834-2 chr2 194680610 194681016 + 1.5 NA Intergenic Intergenic -49782 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 265.333-11 chr2 36167603 36167784 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 187877 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 190-36 chr3 84272171 84272607 + 1.5 NA Intergenic Intergenic 597186 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 172.833-5 chr10 61757935 61758123 + 1.5 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 95068 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 294-16 chr5 122792489 122792971 + 1.5 NA intron (NM_001278199, intron 1 of 14) L1ME3A|LINE|L1 17650 NM_003100 6643 Hs.125352 NM_003100 ENSG00000205302 SNX2 TRG-9 sorting nexin 2 protein-coding 380.333-6 chr19 46009682 46010135 + 1.5 NA intron (NM_001267723, intron 5 of 13) intron (NM_001267723, intron 5 of 13) -9024 NR_030412 768217 NR_030412 ENSG00000211580 MIR769 MIRN769|hsa-mir-769|mir-769 microRNA 769 ncRNA 342.834-3 chr11 107196108 107196579 + 1.5 NA Intergenic Intergenic -177867 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 235.833-21 chr7 129831203 129831748 + 1.5 NA 3' UTR (NM_003344, exon 7 of 7) 3' UTR (NM_003344, exon 7 of 7) -56461 NR_029615 406959 NR_029615 ENSG00000207691 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 234.333-28 chr3 176664026 176664549 + 1.5 NA Intergenic Intergenic -28755 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 249-18 chr2 60875030 60875335 + 1.5 NA intron (NR_033980, intron 1 of 2) MIRb|SINE|MIR 6132 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 249.5-15 chr4 46276913 46277224 + 1.5 NA intron (NM_001114175, intron 7 of 8) HSAT6|Satellite|Satellite 112311 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 416.833-2 chr11 10329106 10329630 + 1.5 NA intron (NR_103765, intron 1 of 3) AluJr|SINE|Alu 21055 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 274.334-8 chr7 109545172 109545510 + 1.5 NA Intergenic Intergenic 414872 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 202.667-32 chr4 81465849 81466054 + 1.5 NA intron (NM_152545, intron 1 of 13) intron (NM_152545, intron 1 of 13) 5956 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 207.167-20 chr5 105034171 105034386 + 1.5 NA Intergenic Intergenic -65196 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 285.5-31 chr8 82504074 82504421 + 1.5 NA Intergenic Intergenic -407857 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 219-20 chr2 221917213 221917391 + 1.5 NA Intergenic Intergenic -343100 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 197.334-4 chr17 61446267 61446471 + 1.5 NA Intergenic MIR|SINE|MIR -6053 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 231.333-21 chr17 49036973 49037264 + 1.5 NA intron (NM_001160423, intron 5 of 12) intron (NM_001160423, intron 5 of 12) 39733 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 251.334-13 chr4 31111753 31111936 + 1.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -59300 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 324-2 chr11 22924197 22924700 + 1.5 NA Intergenic Intergenic -63974 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 212.833-2 chr1 73842486 73842698 + 1.5 NA Intergenic L1MA9|LINE|L1 167913 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 286.167-14 chr3 132252318 132252514 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -64991 NM_001292037 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 319.333 chr1 173309424 173309853 + 1.5 NA intron (NR_037845, intron 2 of 2) L1ME4a|LINE|L1 -102307 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 313.834-7 chr5 148634873 148635208 + 1.5 NA intron (NM_001040172, intron 1 of 5) intron (NM_001040172, intron 1 of 5) 2021 NM_001040173 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 283-28 chr9 138124284 138124564 + 1.5 NA 3' UTR (NM_000718, exon 46 of 46) 3' UTR (NM_000718, exon 46 of 46) -25689 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 183.5-33 chr4 67745960 67746148 + 1.5 NA intron (NM_000406, intron 1 of 2) L1MC4|LINE|L1 10032 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 260.167-20 chr4 164248337 164248540 + 1.5 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) -50727 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 279.666-7 chr4 2219988 2220450 + 1.5 NA intron (NM_181808, intron 3 of 25) LTR41C|LTR|ERVL 21902 NM_024511 79441 Hs.665869 NM_024511 ENSG00000214367 HAUS3 C4orf15|IT1|dgt3 HAUS augmin like complex subunit 3 protein-coding 329.334-8 chr8 124474614 124475084 + 1.5 NA promoter-TSS (NM_007218) promoter-TSS (NM_007218) 82 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 298-2 chr1 225701299 225701601 + 1.5 NA Intergenic Intergenic -48327 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 284.667-6 chr10 110922352 110922720 + 1.5 NA intron (NR_136749, intron 1 of 7) intron (NR_136749, intron 1 of 7) 2993 NM_001324337 8036 Hs.104315 NM_007373 ENSG00000108061 SHOC2 SIAA0862|SOC2|SUR8 SHOC2 leucine rich repeat scaffold protein protein-coding 303-19 chr6 18329413 18329921 + 1.5 NA Intergenic L3|LINE|CR1 -57683 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 285.5-6 chr13 83835966 83836250 + 1.5 NA Intergenic L1PB3|LINE|L1 46285 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 251.5-13 chr2 77121538 77121870 + 1.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 135739 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 292.833-4 chr11 16734769 16735113 + 1.5 NA intron (NM_001367872, intron 1 of 16) intron (NM_001367872, intron 1 of 16) 3536 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 291-16 chr21 34674767 34675010 + 1.5 NA intron (NM_053277, intron 1 of 5) intron (NM_053277, intron 1 of 5) 5894 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 197.833 chr1 42765852 42766144 + 1.5 NA intron (NM_001243246, intron 1 of 13) intron (NM_001243246, intron 1 of 13) 1086 NM_001243246 64175 Hs.720014 NM_022356 ENSG00000117385 P3H1 GROS1|LEPRE1|OI8 prolyl 3-hydroxylase 1 protein-coding 439.334 chr2 150134489 150134990 + 1.5 NA Intergenic Intergenic 122268 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 244.666-13 chr8 122115335 122115861 + 1.5 NA Intergenic Intergenic 453046 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 226.667-14 chr13 73593532 73593828 + 1.5 NA Intergenic Intergenic 29436 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 335.167-11 chr7 41580449 41580768 + 1.5 NA Intergenic Intergenic -113311 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 203-11 chr15 75367912 75368070 + 1.5 NA intron (NM_001256496, intron 2 of 23) intron (NM_001256496, intron 2 of 23) 616 NM_006715 4123 Hs.26232 NM_006715 ENSG00000140400 MAN2C1 MAN6A8|MANA|MANA1 mannosidase alpha class 2C member 1 protein-coding 173.333-28 chr6 114733163 114733326 + 1.5 NA Intergenic Intergenic -670367 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 313.833-3 chr13 73722957 73723361 + 1.5 NA intron (NM_007249, intron 6 of 7) intron (NM_007249, intron 6 of 7) 158915 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 388.333-3 chr13 27270742 27271158 + 1.5 NA promoter-TSS (NM_001331126) promoter-TSS (NM_001331126) -227 NM_001331126 387496 Hs.192131 NM_206827 ENSG00000122035 RASL11A - RAS like family 11 member A protein-coding 280.5-10 chr17 75289501 75289751 + 1.5 NA promoter-TSS (NM_021734) promoter-TSS (NM_021734) -177 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 350.167-4 chr11 107578634 107579042 + 1.5 NA Intergenic Intergenic -12253 NM_001130037 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 243.833-15 chr2 14866164 14866390 + 1.5 NA Intergenic Intergenic 233560 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 340.167-7 chr4 109804123 109804614 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -2143 NM_000204 3426 Hs.312485 NM_000204 ENSG00000205403 CFI AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF complement factor I protein-coding 194-21 chr19 7078875 7079211 + 1.5 NA intron (NM_024341, intron 5 of 7) L1MB5|LINE|L1 9340 NM_001044387 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 255.167-18 chr2 64125707 64125979 + 1.5 NA intron (NM_020651, intron 1 of 6) Tigger4b|DNA|TcMar-Tigger 18577 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 313.5-12 chr19 30391070 30391473 + 1.5 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 18887 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 199.333-50 chr9 115484361 115484532 + 1.5 NA Intergenic Intergenic 259793 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 407.499-2 chr8 31053119 31053487 + 1.5 NA intron (NM_000553, intron 1 of 34) Charlie17|DNA|hAT-Charlie -19947 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 287.5-10 chr2 13200206 13200586 + 1.5 NA Intergenic Intergenic -193383 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 630.667-3 chr20 45306133 45306913 + 1.5 NA promoter-TSS (NM_001281448) promoter-TSS (NM_001281448) -317 NM_001281448 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 465.167-2 chr1 154878336 154878876 + 1.5 NA Intergenic Intergenic -8325 NM_002249 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 258.833-6 chr16 64089585 64089924 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie 1032309 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 265.5-21 chr3 193960606 193961022 + 1.5 NA intron (NR_033944, intron 1 of 2) GA-rich|Low_complexity|Low_complexity 33424 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 169.833-35 chr4 132681991 132682263 + 1.5 NA Intergenic LTR56|LTR|ERV1 91038 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 400-5 chr12 48615858 48616191 + 1.5 NA Intergenic L1PA11|LINE|L1 38494 NR_002968 677815 Hs.689717 NR_002968 ENSG00000221491 SNORA2C ACA34|MIR1291|SNORA34 small nucleolar RNA, H/ACA box 2C snoRNA 653.833-5 chr7 104983915 104984531 + 1.5 NA non-coding (NR_039981, exon 1 of 1) non-coding (NR_039981, exon 1 of 1) 6942 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 507.001-2 chr20 50958514 50959029 + 1.5 NA promoter-TSS (NM_001317034) promoter-TSS (NM_001317034) -47 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 348.167-14 chr8 118796103 118796492 + 1.5 NA Intergenic Intergenic 155588 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 445.333 chr1 173824720 173825242 + 1.5 NA promoter-TSS (NM_001127181) promoter-TSS (NM_001127181) 308 NM_001365212 55157 Hs.647707 NM_018122 ENSG00000117593 DARS2 ASPRS|LBSL|MT-ASPRS|mtAspRS aspartyl-tRNA synthetase 2, mitochondrial protein-coding 724.333-2 chr17 48471923 48473076 + 1.5 NA Intergenic Intergenic 27666 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 227.167-13 chr2 9751019 9751345 + 1.5 NA Intergenic LTR78|LTR|ERV1 -92260 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 295.333-18 chr4 67121966 67122169 + 1.5 NA Intergenic Intergenic 299933 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 293.167-4 chr14 52354035 52354417 + 1.5 NA Intergenic Intergenic 39914 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 199.5-5 chr10 32665089 32665258 + 1.5 NA intron (NM_001321115, intron 22 of 43) L1MA8|LINE|L1 219033 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 356-8 chr13 107375950 107376278 + 1.5 NA intron (NM_001080396, intron 1 of 2) MLT1F|LTR|ERVL-MaLR -55151 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 305.001-2 chr7 29879535 29879922 + 1.5 NA intron (NM_001080529, intron 4 of 8) MLT1H|LTR|ERVL-MaLR 73174 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 330.833-12 chr20 54741065 54741560 + 1.5 NA Intergenic Intergenic 265719 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 292.167-20 chr6 132907923 132908253 + 1.5 NA Intergenic Intergenic 90869 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 715.999 chr2 74120038 74120620 + 1.5 NA Intergenic CpG 27583 NM_212552 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 293.667-10 chr19 14158260 14158733 + 1.5 NA exon (NM_014921, exon 12 of 23) exon (NM_014921, exon 12 of 23) 21344 NR_045214 100507373 Hs.720437 NR_045214 ENSG00000267169 LOC100507373 - uncharacterized LOC100507373 ncRNA 232.5-2 chr1 109387477 109387785 + 1.5 NA intron (NM_002959, intron 1 of 19) intron (NM_002959, intron 1 of 19) 5726 NM_001205228 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 182-31 chr3 41354547 41354798 + 1.5 NA intron (NM_001322500, intron 35 of 35) intron (NM_001322500, intron 35 of 35) 155167 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 506.501 chr11 8032370 8033578 + 1.5 NA Intergenic Intergenic -5659 NM_003320 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 253.667-35 chr6 49959794 49959997 + 1.5 NA TTS (NM_001037499) TTS (NM_001037499) 4269 NM_001037499 245928 Hs.381372 NM_001037499 ENSG00000177684 DEFB114 DEFB-14|DEFB14 defensin beta 114 protein-coding 349.833-9 chr4 116633501 116633911 + 1.5 NA Intergenic Intergenic 333981 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 395.167-7 chr7 131507815 131508254 + 1.5 NA intron (NM_001018111, intron 5 of 8) intron (NM_001018111, intron 5 of 8) 48594 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 222.5-26 chr3 39176204 39176412 + 1.5 NA Intergenic L2a|LINE|L2 16287 NM_194293 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 193.5-6 chr1 181503572 181503806 + 1.5 NA intron (NM_001205293, intron 1 of 47) intron (NM_001205293, intron 1 of 47) 20172 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 178.5-17 chr14 105352337 105352482 + 1.5 NA exon (NM_001100913, exon 3 of 25) exon (NM_001100913, exon 3 of 25) -36832 NM_001242786 2972 Hs.424484 NM_001519 ENSG00000185024 BRF1 BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF BRF1 RNA polymerase III transcription initiation factor subunit protein-coding 223.667-39 chr4 16910738 16911101 + 1.5 NA Intergenic Intergenic -12110 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 190.5-47 chr7 15611437 15611654 + 1.5 NA 3' UTR (NM_005924, exon 3 of 3) 3' UTR (NM_005924, exon 3 of 3) -49530 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 210.5-14 chr14 70948675 70948957 + 1.5 NA intron (NM_014982, intron 2 of 35) (TA)n|Simple_repeat|Simple_repeat 41357 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 253.167-8 chr17 44636777 44636989 + 1.5 NA Intergenic Intergenic 13466 NR_110661 101927017 Hs.560554 NR_110661 ENSG00000266979 LINC01180 - long intergenic non-protein coding RNA 1180 ncRNA 310.5-21 chr9 37184463 37184825 + 1.5 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 64046 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 421.5-5 chr6 161748452 161749189 + 1.5 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 277843 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 533-3 chr22 31313055 31313883 + 1.5 NA Intergenic Intergenic -20935 NM_001135911 113791 Hs.26670 NM_052880 ENSG00000100100 PIK3IP1 HGFL|TrIP|hHGFL(S) phosphoinositide-3-kinase interacting protein 1 protein-coding 339-12 chr3 78919795 78920141 + 1.5 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 99491 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 476.334-3 chr10 95841331 95841903 + 1.5 NA intron (NM_001164182, intron 3 of 8) intron (NM_001164182, intron 3 of 8) -66348 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 258.834-5 chr2 74603310 74603607 + 1.5 NA intron (NM_001321739, intron 4 of 10) intron (NM_001321739, intron 4 of 10) 44579 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 210.167-3 chr1 172746215 172746477 + 1.5 NA Intergenic Intergenic 87243 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 330.834-4 chr20 41751149 41751568 + 1.5 NA Intergenic Intergenic -132981 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 237.167-20 chr5 178604224 178604409 + 1.5 NA intron (NM_020666, intron 11 of 12) MIRb|SINE|MIR -13923 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 182-12 chr15 89555049 89555252 + 1.5 NA Intergenic Intergenic -20319 NM_152259 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 190.5-24 chr2 146133211 146133373 + 1.5 NA Intergenic MER101B|LTR|ERV1 -453765 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 307.167-22 chr5 99975047 99975383 + 1.5 NA Intergenic Intergenic 413039 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 183.667-26 chr2 60423490 60423657 + 1.5 NA Intergenic Intergenic -32198 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 432-2 chr2 162153271 162153960 + 1.5 NA intron (NR_110255, intron 1 of 3) MER5A1|DNA|hAT-Charlie -1368 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 195.167-11 chr13 76184904 76185071 + 1.5 NA Intergenic MIR|SINE|MIR -249855 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 277.667-18 chr21 26899812 26900179 + 1.5 NA Intergenic L1MEc|LINE|L1 -53966 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 231.5-10 chr13 85619003 85619399 + 1.5 NA Intergenic MER67C|LTR|ERV1 180218 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 429.999 chr12 33647268 33647581 + 1.5 NA Intergenic Intergenic -207605 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 333.833-8 chr2 88055580 88056322 + 1.5 NA promoter-TSS (NM_016618) promoter-TSS (NM_016618) -168 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 311.667-5 chr12 132860361 132860596 + 1.5 NA intron (NM_018223, intron 7 of 17) HAL1|LINE|L1 27140 NM_001161347 55743 Hs.720197 NM_018223 ENSG00000072609 CHFR RNF116|RNF196 checkpoint with forkhead and ring finger domains protein-coding 675-2 chr17 80426467 80427470 + 1.5 NA intron (NR_148043, intron 5 of 5) intron (NR_148043, intron 5 of 5) 7550 NR_039883 100616359 NR_039883 ENSG00000264961 MIR4730 - microRNA 4730 ncRNA 490.667-2 chr8 22650921 22651445 + 1.5 NA intron (NM_018688, intron 1 of 8) HAL1|LINE|L1 -8974 NR_027715 80094 Hs.675917 NM_025026 BIN3-IT1 - BIN3 intronic transcript 1 ncRNA 352.333-3 chr11 103588748 103589332 + 1.5 NA Intergenic Intergenic -260866 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 332-20 chr3 172633045 172633476 + 1.5 NA 3' UTR (NM_001146278, exon 4 of 4) 3' UTR (NM_001146278, exon 4 of 4) -37653 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 391.666-6 chr5 158249109 158249581 + 1.5 NA Intergenic L1M5|LINE|L1 160428 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 283.833-4 chr18 37923137 37923332 + 1.5 NA Intergenic Intergenic 266099 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 353.333-15 chr9 93536174 93536477 + 1.5 NA intron (NM_001286722, intron 10 of 17) intron (NM_001286722, intron 10 of 17) -40259 NM_005392 5253 Hs.211441 NM_005392 ENSG00000197724 PHF2 CENP-35|GRC5|JHDM1E|KDM7C PHD finger protein 2 protein-coding 326.833-10 chr17 74140243 74140587 + 1.5 NA Intergenic L1ME1|LINE|L1 -63263 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 320.833-11 chr8 79783404 79784025 + 1.5 NA intron (NR_125410, intron 3 of 3) CpG 15572 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 251-36 chr9 123066418 123066725 + 1.5 NA intron (NM_012197, intron 14 of 25) intron (NM_012197, intron 14 of 25) 32928 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 295.5-16 chr7 132473478 132473726 + 1.5 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 102868 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 209.167-8 chr12 53758365 53758562 + 1.5 NA Intergenic Intergenic -1429 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 318.167-13 chrX 16826099 16826325 + 1.5 NA intron (NM_018360, intron 3 of 9) intron (NM_018360, intron 3 of 9) 39746 NM_018360 55787 Hs.555961 NM_018360 ENSG00000086712 TXLNG CXorf15|ELRG|FIAT|LSR5|TXLNGX taxilin gamma protein-coding 292.333-23 chr8 96226838 96227130 + 1.5 NA non-coding (NR_045639, exon 5 of 5) non-coding (NR_045639, exon 5 of 5) 8650 NM_006294 7381 Hs.131255 NM_006294 ENSG00000156467 UQCRB MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC ubiquinol-cytochrome c reductase binding protein protein-coding 262.5-9 chr13 80585015 80585273 + 1.5 NA Intergenic Intergenic -244018 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 342.333-8 chr6 44056973 44057361 + 1.5 NA intron (NR_125864, intron 1 of 4) intron (NR_125864, intron 1 of 4) 17485 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 260.833 chr1 46577502 46577681 + 1.5 NA intron (NM_198973, intron 4 of 11) intron (NM_198973, intron 4 of 11) -25934 NM_001322255 148930 Hs.350764 NM_182516 ENSG00000162456 KNCN Kino|L5 kinocilin protein-coding 257.833-4 chr2 27050730 27050986 + 1.5 NA promoter-TSS (NM_001035507) promoter-TSS (NM_001035507) -565 NR_138023 60509 Hs.138207 NM_021831 ENSG00000084693 AGBL5 CCP5|RP75 ATP/GTP binding protein like 5 protein-coding 251.5-12 chr18 1918865 1919133 + 1.5 NA Intergenic MER4D|LTR|ERV1 -559370 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 394.834-2 chr20 49218895 49219562 + 1.5 NA promoter-TSS (NM_001348187) promoter-TSS (NM_001348187) -67 NM_017895 55661 Hs.65234 NM_017895 ENSG00000124228 DDX27 DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1 DEAD-box helicase 27 protein-coding 261.833-15 chr6 72580190 72580577 + 1.5 NA Intergenic Intergenic -41460 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 501-2 chr12 931860 932261 + 1.5 NA intron (NM_001297422, intron 2 of 8) intron (NM_001297422, intron 2 of 8) 1016 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 185.833-4 chr10 101818579 101818981 + 1.5 NA promoter-TSS (NR_045118) promoter-TSS (NR_045118) -288 NR_045118 100289509 Hs.568881 NR_045118 ENSG00000226009 KCNIP2-AS1 - KCNIP2 antisense RNA 1 ncRNA 317-7 chr2 103081304 103081555 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity -97000 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 175-32 chr2 143779870 143780018 + 1.5 NA Intergenic MIRc|SINE|MIR -157123 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 512.833-3 chr20 4585196 4585659 + 1.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -101029 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 258.5-32 chr8 111036473 111036771 + 1.5 NA Intergenic Intergenic -9189 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 299.5-11 chr19 49931695 49932032 + 1.5 NA intron (NM_001290746, intron 2 of 2) intron (NM_001290746, intron 2 of 2) -1201 NR_039906 100616483 NR_039906 ENSG00000283842 MIR4751 - microRNA 4751 ncRNA 239.667-42 chr8 128079038 128079264 + 1.5 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 29999 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 316-16 chr8 140117631 140118124 + 1.5 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -17342 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 331-10 chr14 20671986 20672329 + 1.5 NA Intergenic LTR59|LTR|ERV1 -12020 NM_001145 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 215-27 chr3 6330078 6330290 + 1.5 NA Intergenic Intergenic 475265 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 199.5-29 chr20 47191169 47191379 + 1.5 NA Intergenic L2b|LINE|L2 24307 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 300.5-2 chr1 247576489 247576961 + 1.5 NA 3' UTR (NM_001281853, exon 7 of 7) 3' UTR (NM_001281853, exon 7 of 7) -11635 NM_001001915 81470 Hs.690208 NM_001001915 ENSG00000177489 OR2G2 OR1-32 olfactory receptor family 2 subfamily G member 2 protein-coding 237.5-13 chr14 63045823 63046080 + 1.5 NA promoter-TSS (NM_172375) promoter-TSS (NM_172375) -493 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 251.5-35 chr9 91495214 91495672 + 1.5 NA Intergenic Intergenic -70817 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 384-3 chr11 2610152 2610624 + 1.5 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 89610 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 221-33 chr6 132511379 132511581 + 1.5 NA intron (NM_001326579, intron 1 of 9) L2a|LINE|L2 1303 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 165.333-36 chr5 20292583 20292734 + 1.5 NA intron (NM_001349556, intron 1 of 13) MLT1C|LTR|ERVL-MaLR -12893 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 254-6 chr10 108454961 108455207 + 1.5 NA Intergenic Intergenic -385791 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 176.333-8 chr13 69545708 69545825 + 1.5 NA Intergenic Intergenic 323420 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 218-13 chr12 116022101 116022393 + 1.5 NA intron (NM_015335, intron 5 of 30) intron (NM_015335, intron 5 of 30) 126407 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 274-8 chr12 63757442 63757697 + 1.5 NA Intergenic Intergenic -22340 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 170.5-27 chr3 5126204 5126494 + 1.5 NA intron (NM_018184, intron 1 of 6) intron (NM_018184, intron 1 of 6) 4057 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 304.333-5 chr11 76680754 76681389 + 1.5 NA intron (NR_024042, intron 20 of 20) intron (NR_024042, intron 20 of 20) -10324 NM_001370191 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 550.167-2 chr6 104789819 104790430 + 1.5 NA intron (NR_146792, intron 12 of 24) intron (NR_146792, intron 12 of 24) 69422 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 349.667-11 chr9 129617317 129617693 + 1.5 NA intron (NM_199350, intron 3 of 6) L2b|LINE|L2 -2708 NM_001286797 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 358-14 chr6 71609244 71609832 + 1.5 NA Intergenic Intergenic 188511 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 308.167-12 chr3 59057020 59057511 + 1.5 NA Intergenic MER90a|LTR|ERV1 -7233 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 168-49 chr8 73008663 73008803 + 1.5 NA promoter-TSS (NM_003218) promoter-TSS (NM_003218) -131 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 253-18 chr3 41681378 41681635 + 1.5 NA intron (NR_136342, intron 27 of 34) intron (NR_136342, intron 27 of 34) 280597 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 400.834-2 chr3 165783580 165784149 + 1.5 NA intron (NR_137636, intron 3 of 4) intron (NR_137636, intron 3 of 4) 53559 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 237.333-19 chr2 148723627 148723910 + 1.5 NA intron (NM_015630, intron 2 of 13) intron (NM_015630, intron 2 of 13) 79017 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 216.5-4 chr1 145979681 145979969 + 1.5 NA TTS (NM_001330685) TTS (NM_001330685) 15135 NM_032305 84265 Hs.591456 NM_032305 ENSG00000121851 POLR3GL RPC32HOM|flj32422 RNA polymerase III subunit G like protein-coding 367-26 chr8 53185773 53186118 + 1.5 NA Intergenic L1MEc|LINE|L1 65692 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 168.5-20 chr16 30734944 30735123 + 1.5 NA intron (NM_006662, intron 31 of 33) MER5A|DNA|hAT-Charlie -5609 NM_001256829 100862671 Hs.667372 NM_001256829 ENSG00000281991 TMEM265 IFITMD8 transmembrane protein 265 protein-coding 244-30 chr6 69336568 69336841 + 1.5 NA intron (NM_001704, intron 24 of 31) intron (NM_001704, intron 24 of 31) 459762 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 305-2 chr1 214194634 214194995 + 1.5 NA Intergenic Intergenic -86345 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 201.667-22 chr2 64807441 64807655 + 1.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 56083 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 294.333-4 chr12 20892831 20893163 + 1.5 NA intron (NM_019844, intron 13 of 15) L2a|LINE|L2 70449 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 204.167-9 chr15 100941041 100941216 + 1.5 NA intron (NM_024652, intron 2 of 33) LTR86A1|LTR|ERVL 21771 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 269-6 chr10 84666299 84666502 + 1.5 NA Intergenic LTR50|LTR|ERVL 241231 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 241-27 chr5 84344401 84344596 + 1.5 NA intron (NM_001278642, intron 1 of 9) Charlie5|DNA|hAT-Charlie 40369 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 268-28 chr3 150308296 150308966 + 1.5 NA intron (NR_110187, intron 1 of 1) intron (NR_110187, intron 1 of 1) 15116 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 163.167-12 chr13 79427594 79427799 + 1.5 NA Intergenic MER65A|LTR|ERV1 21387 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 254.167-15 chr2 35880088 35880273 + 1.5 NA Intergenic Intergenic 408775 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 294.667-3 chr1 197358696 197359096 + 1.5 NA intron (NM_001193640, intron 3 of 9) MLT1J1|LTR|ERVL-MaLR 90644 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 294.167-8 chr2 61993522 61993952 + 1.5 NA intron (NM_152516, intron 1 of 2) intron (NM_152516, intron 1 of 2) 88095 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 402.667 chr1 50348671 50349170 + 1.5 NA Intergenic Intergenic 74523 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 357-6 chr17 27378330 27378775 + 1.5 NA Intergenic L1MEb|LINE|L1 -39453 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 385.167-10 chr7 114048221 114048658 + 1.5 NA Intergenic MER21-int|LTR|ERVL -37888 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 211.5-30 chr20 21027712 21027969 + 1.5 NA Intergenic Intergenic 78518 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 226-31 chr22 49213169 49213328 + 1.5 NA Intergenic Intergenic 330218 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 435.666-2 chr14 33692487 33693007 + 1.5 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) -16190 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 259-23 chr2 233823816 233824082 + 1.5 NA intron (NM_001367507, intron 35 of 41) intron (NM_001367507, intron 35 of 41) 30586 NM_018410 55355 Hs.532968 NM_018410 ENSG00000123485 HJURP FAKTS|URLC9|hFLEG1 Holliday junction recognition protein protein-coding 166-23 chr14 52683655 52683836 + 1.5 NA intron (NM_014584, intron 2 of 15) intron (NM_014584, intron 2 of 15) 11813 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 263-5 chr10 74791004 74791244 + 1.5 NA Intergenic L1MB3|LINE|L1 -34131 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 221.334-11 chr4 84199577 84199772 + 1.5 NA intron (NR_125909, intron 5 of 8) MER44B|DNA|TcMar-Tigger 99495 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 244.667-6 chr12 20138620 20138871 + 1.5 NA Intergenic Intergenic -10844 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 299.833-12 chr20 46689358 46689774 + 1.5 NA promoter-TSS (NM_033550) promoter-TSS (NM_033550) -122 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding 220.333-10 chr19 9939520 9939727 + 1.5 NA Intergenic LTR33A|LTR|ERVL -3108 NM_058164 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 213-45 chr8 131521988 131522217 + 1.5 NA Intergenic Intergenic -381991 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 251.667-10 chr12 6540616 6540817 + 1.5 NA intron (NM_001330324, intron 8 of 8) CpG 5452 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 360.5-7 chr3 87966651 87967133 + 1.5 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -15684 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 201.834-5 chr17 17729620 17729798 + 1.5 NA intron (NM_030665, intron 2 of 5) intron (NM_030665, intron 2 of 5) 36593 NR_130894 100861516 Hs.624874 NR_130894 ENSG00000237328 RAI1-AS1 - RAI1 antisense RNA 1 ncRNA 392.167-4 chr8 113865295 113865768 + 1.5 NA Intergenic Intergenic -428592 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 284.5 chr1 208132324 208132623 + 1.5 NA intron (NM_025179, intron 4 of 31) MIRb|SINE|MIR 111911 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 301.667-15 chr4 77017419 77017660 + 1.5 NA intron (NM_001306147, intron 7 of 11) intron (NM_001306147, intron 7 of 11) 57371 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 384.834-2 chr7 131085834 131086267 + 1.5 NA intron (NR_109850, intron 2 of 5) L1MC4|LINE|L1 20980 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 353.667-9 chr7 16018067 16018513 + 1.5 NA Intergenic Intergenic -192196 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 288.333-2 chr10 19525225 19525493 + 1.5 NA intron (NM_001142308, intron 31 of 39) intron (NM_001142308, intron 31 of 39) 203191 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 178-38 chr6 84686218 84686365 + 1.5 NA Intergenic L2c|LINE|L2 -3167 NR_125875 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 274.5-25 chr7 9085995 9086531 + 1.5 NA Intergenic L1MC|LINE|L1 -548007 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 184.167-22 chr2 155940241 155940496 + 1.5 NA Intergenic L1PA14|LINE|L1 314563 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 231.667-22 chr5 17723578 17723874 + 1.5 NA Intergenic Intergenic -68088 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 417-4 chr4 73017278 73017662 + 1.5 NA Intergenic Intergenic 52246 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 181-20 chr17 65509028 65509400 + 1.5 NA Intergenic L1ME2|LINE|L1 51673 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 378.5-8 chr22 23270365 23270738 + 1.5 NA intron (NM_004327, intron 5 of 22) intron (NM_004327, intron 5 of 22) 7784 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 324.5-8 chr5 109351563 109351931 + 1.5 NA intron (NM_014819, intron 7 of 9) intron (NM_014819, intron 7 of 9) -25378 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 433-8 chr20 35216726 35217074 + 1.5 NA intron (NM_001355008, intron 4 of 14) intron (NM_001355008, intron 4 of 14) -9790 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 206.5-22 chr17 35567838 35568040 + 1.5 NA promoter-TSS (NR_135479) promoter-TSS (NR_135479) -175 NR_135479 105371743 NR_135479 SNHG30 LINC02001 small nucleolar RNA host gene 30 ncRNA 219.667 chr1 78840905 78841146 + 1.5 NA Intergenic Intergenic 165705 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 278.167-10 chr16 28863304 28863867 + 1.5 NA promoter-TSS (NM_001308294) promoter-TSS (NM_001308294) -172 NM_001145797 25970 Hs.15744 NM_015503 ENSG00000178188 SH2B1 PSM|SH2B SH2B adaptor protein 1 protein-coding 255.5-5 chr10 54187766 54188072 + 1.5 NA intron (NM_001142770, intron 11 of 34) intron (NM_001142770, intron 11 of 34) -298311 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 299.833-16 chr8 133656996 133657385 + 1.5 NA Intergenic Intergenic 26876 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 334.667-3 chr11 13223748 13224227 + 1.5 NA Intergenic Charlie4z|DNA|hAT-Charlie -52665 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 249.334-2 chr12 60605113 60605321 + 1.5 NA Intergenic L1M4c|LINE|L1 915847 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 250.833-9 chr18 48229436 48229604 + 1.5 NA intron (NM_001371285, intron 1 of 5) intron (NM_001371285, intron 1 of 5) -22781 NM_001350280 84322 Hs.334493 NM_032362 C18orf12 HEIL1|HsT2508 chromosome 18 open reading frame 12 protein-coding 233.833-6 chr12 17265171 17265337 + 1.5 NA Intergenic Intergenic 276507 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 251-3 chr11 127517737 127517954 + 1.5 NA Intergenic L1PA7|LINE|L1 246775 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 206.5-45 chr5 14966501 14966685 + 1.5 NA Intergenic L1MDa|LINE|L1 -94815 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 245.5-14 chr2 178451282 178451510 + 1.5 NA promoter-TSS (NM_001353778) promoter-TSS (NM_001353778) -40 NM_001353777 494513 Hs.87734 NM_001042702 ENSG00000204311 PJVK DFNB59 pejvakin protein-coding 504.667-2 chr8 55814848 55815483 + 1.5 NA intron (NM_001317902, intron 10 of 10) intron (NM_001317902, intron 10 of 10) 41719 NM_001317902 96764 Hs.335068 NM_024831 ENSG00000137574 TGS1 NCOA6IP|PIMT|PIPMT trimethylguanosine synthase 1 protein-coding 224.833-21 chr5 104283627 104283865 + 1.5 NA Intergenic Intergenic -720957 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 196.5-15 chr16 17674458 17674652 + 1.5 NA Intergenic L1MB7|LINE|L1 -203595 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 275.5-30 chr8 103416594 103416906 + 1.5 NA intron (NM_015420, intron 1 of 10) L2c|LINE|L2 1364 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 199.5-24 chr2 36023270 36023497 + 1.5 NA Intergenic L1MEg|LINE|L1 332187 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 301.5-12 chr2 17830307 17830934 + 1.5 NA Intergenic Intergenic 14160 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 394-15 chr6 155782230 155782673 + 1.5 NA Intergenic MER31B|LTR|ERV1 -164346 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 276-4 chr10 55672285 55672692 + 1.5 NA Intergenic Intergenic -44546 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 263.667-23 chr7 133777281 133777456 + 1.5 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 47520 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 247.667-24 chr20 54790045 54790308 + 1.5 NA Intergenic L1PREC2|LINE|L1 314583 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 483.167-6 chr9 137067869 137068344 + 1.5 NA intron (NM_178448, intron 1 of 5) intron (NM_178448, intron 1 of 5) 2451 NM_178448 89958 Hs.19322 NM_178448 ENSG00000186193 SAPCD2 C9orf140|p42.3 suppressor APC domain containing 2 protein-coding 448.833 chr11 126244330 126244638 + 1.5 NA intron (NM_024556, intron 4 of 8) L1M4|LINE|L1 24411 NM_003139 6734 Hs.368376 NM_003139 ENSG00000182934 SRPRA DP|SRPR|Sralpha SRP receptor subunit alpha protein-coding 170.167-25 chr20 33792086 33792315 + 1.5 NA TTS (NM_032819) TTS (NM_032819) 18899 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 231-6 chr12 9054496 9054696 + 1.5 NA TTS (NR_034140) TTS (NR_034140) 10474 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 279.167-11 chr4 148004329 148004553 + 1.5 NA intron (NM_024605, intron 18 of 22) intron (NM_024605, intron 18 of 22) 221846 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 238.834-9 chr21 30362721 30363347 + 1.5 NA Intergenic L1PB4|LINE|L1 9237 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 266.167 chr17 58219898 58220189 + 1.5 NA promoter-TSS (NM_001330397) promoter-TSS (NM_001330397) -438 NM_001165927 54903 Hs.408843 NM_017777 ENSG00000011143 MKS1 BBS13|JBTS28|MES|MKS|POC12 MKS transition zone complex subunit 1 protein-coding 348.5-16 chr5 50930010 50930335 + 1.5 NA Intergenic Intergenic 40015 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 458-3 chr10 24383684 24384095 + 1.5 NA intron (NM_019590, intron 3 of 20) intron (NM_019590, intron 3 of 20) -65525 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 364.167-9 chrX 131763249 131763581 + 1.5 NA intron (NR_026975, intron 7 of 12) intron (NR_026975, intron 7 of 12) 67228 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 254.5-2 chr1 99879637 99879841 + 1.5 NA intron (NM_000028, intron 12 of 33) intron (NM_000028, intron 12 of 33) 28764 NM_000646 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 319.833-7 chr2 126330062 126330403 + 1.5 NA Intergenic AluJr|SINE|Alu -212247 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 187.333-47 chr8 118193422 118193713 + 1.5 NA non-coding (NR_109794, exon 5 of 5) non-coding (NR_109794, exon 5 of 5) -81748 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 459.667-4 chr7 22082660 22083090 + 1.5 NA Intergenic Intergenic 110870 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 268.667-5 chr11 83241091 83241479 + 1.5 NA intron (NM_182603, intron 9 of 9) L2a|LINE|L2 45122 NM_001286119 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 175.833-29 chr3 12194422 12194778 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -35688 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 272.834-6 chr2 98876791 98877091 + 1.5 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 59284 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 223.667-51 chr9 71606862 71607096 + 1.5 NA Intergenic Intergenic -160008 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 311.833 chr10 96408742 96409140 + 1.5 NA intron (NM_012465, intron 9 of 20) MIR|SINE|MIR -49576 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 474-7 chr4 73307357 73307829 + 1.5 NA Intergenic Intergenic -48795 NM_032217 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 267.833-8 chr4 97785049 97785442 + 1.5 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 358231 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 204.833-18 chr4 17636751 17637082 + 1.5 NA intron (NM_015688, intron 14 of 17) intron (NM_015688, intron 14 of 17) 22275 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 226.167-13 chr18 77897839 77898112 + 1.5 NA Intergenic Intergenic 95752 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 275.167-20 chr4 173001785 173002067 + 1.5 NA intron (NM_001034845, intron 10 of 12) L1MB4|LINE|L1 -166885 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 269.5-21 chr5 42636256 42636928 + 1.5 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 70728 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 296.833-4 chr12 14258107 14258335 + 1.5 NA Intergenic Intergenic -107411 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 228.167-15 chr19 31647052 31647497 + 1.5 NA Intergenic L1MC4|LINE|L1 54993 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 478.5-7 chr5 93909517 93910146 + 1.5 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -168231 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 365-3 chr10 51832174 51832443 + 1.5 NA intron (NM_001098512, intron 4 of 17) L2c|LINE|L2 -132713 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 362-10 chr12 128387651 128388214 + 1.5 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 93840 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 301.666 chr1 153633728 153634030 + 1.5 NA promoter-TSS (NM_001317077) promoter-TSS (NM_001317077) -103 NM_001206612 26097 Hs.611057 NM_015607 ENSG00000160679 CHTOP C10orf77|C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704 chromatin target of PRMT1 protein-coding 387-18 chr6 119147128 119147591 + 1.5 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) 1834 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 385.166 chr12 10241642 10241949 + 1.5 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) 2834 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 532-2 chr17 7834758 7835652 + 1.5 NA Intergenic CpG -4701 NM_001348716 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 401.5-3 chr17 30378451 30379030 + 1.5 NA promoter-TSS (NM_001304) promoter-TSS (NM_001304) -187 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 254.5-22 chr2 181573403 181573600 + 1.5 NA intron (NM_001160277, intron 2 of 12) intron (NM_001160277, intron 2 of 12) 83604 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 360.333-3 chr14 71898870 71899171 + 1.5 NA Intergenic Intergenic -33151 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 493.5-3 chr17 81023557 81024329 + 1.5 NA Intergenic Intergenic 10776 NR_026857 440465 Hs.448889 NM_001004336 ENSG00000226137 BAIAP2-DT BAIAP2-AS1|lnc-BAIAP2 BAIAP2 divergent transcript ncRNA 350.167-2 chr10 86872371 86872655 + 1.5 NA intron (NM_004329, intron 2 of 12) MIR|SINE|MIR -83246 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 223.333-43 chr7 30888823 30889035 + 1.5 NA intron (NR_037598, intron 19 of 19) intron (NR_037598, intron 19 of 19) -22765 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 169.333-22 chr13 70332443 70332555 + 1.5 NA Intergenic MLT2B3|LTR|ERVL -224006 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 287.667-23 chr6 111997252 111997708 + 1.5 NA Intergenic Intergenic -56595 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 515.334-2 chr1 153617561 153618294 + 1.5 NA TTS (NM_005979) TTS (NM_005979) -1602 NM_020672 57402 Hs.288998 NM_020672 ENSG00000189334 S100A14 BCMP84|S100A15 S100 calcium binding protein A14 protein-coding 270.5-14 chr18 6718419 6718721 + 1.5 NA Intergenic Intergenic -11146 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 281.5-13 chr3 111068953 111069234 + 1.5 NA intron (NR_045114, intron 2 of 3) intron (NR_045114, intron 2 of 3) 866 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 248.167-18 chr3 125551578 125551865 + 1.5 NA intron (NM_022776, intron 9 of 12) AluSx1|SINE|Alu -31519 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 436.5-6 chr6 42309286 42309765 + 1.5 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) -91664 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 223.833-19 chr7 13251035 13251241 + 1.5 NA Intergenic L1MA8|LINE|L1 563505 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 438.333-7 chr8 55369953 55370528 + 1.5 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 85081 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 388.5-5 chr20 20237365 20237801 + 1.5 NA intron (NM_015585, intron 18 of 26) intron (NM_015585, intron 18 of 26) -130521 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 333.5-17 chr3 121670805 121671063 + 1.5 NA intron (NM_001256486, intron 17 of 21) intron (NM_001256486, intron 17 of 21) -10031 NM_001292041 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 185-13 chr11 102293724 102293907 + 1.5 NA Intergenic Intergenic -23669 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 493.5-2 chr12 38664558 38665264 + 1.5 NA intron (NM_153634, intron 19 of 19) intron (NM_153634, intron 19 of 19) 240680 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 283.333-7 chr15 38248182 38248377 + 1.5 NA Intergenic Intergenic -4557 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 243.833-6 chr10 50501798 50502176 + 1.5 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 121969 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 347.334-4 chr19 35141422 35141910 + 1.5 NA intron (NM_001278718, intron 5 of 7) CpG-14273 -1589 NM_022006 53822 Hs.134729 NM_022006 ENSG00000221946 FXYD7 - FXYD domain containing ion transport regulator 7 protein-coding 344.5-19 chrX 111680763 111681204 + 1.5 NA promoter-TSS (NM_001324292) promoter-TSS (NM_001324292) -135 NR_033125 79868 Hs.443061 NM_018466 ENSG00000101901 ALG13 CDG1S|CXorf45|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W ALG13 UDP-N-acetylglucosaminyltransferase subunit protein-coding 469-5 chr8 91700826 91701157 + 1.5 NA Intergenic L1MA1|LINE|L1 316689 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 364.5-11 chr6 25490311 25490671 + 1.5 NA intron (NM_001173977, intron 13 of 36) AluJb|SINE|Alu -161724 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 251.834-8 chr6 66558905 66559307 + 1.5 NA Intergenic Intergenic 771227 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 305.5-15 chr5 135808032 135808303 + 1.5 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) -5092 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 418.667-6 chr4 77862242 77862759 + 1.5 NA promoter-TSS (NM_020236) promoter-TSS (NM_020236) -330 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 350.667-14 chr4 168923627 168924096 + 1.5 NA intron (NM_001367567, intron 8 of 11) intron (NM_001367567, intron 8 of 11) 86394 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 277-7 chr11 116399824 116400113 + 1.5 NA Intergenic Intergenic -239454 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 182.333-14 chr2 84516336 84516507 + 1.5 NA promoter-TSS (NM_001370) promoter-TSS (NM_001370) -34 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 510.833-3 chr4 19224274 19224992 + 1.5 NA Intergenic L1MA10|LINE|L1 -1027272 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 315.333-10 chr2 71548814 71549289 + 1.5 NA intron (NM_001130985, intron 17 of 54) intron (NM_001130985, intron 17 of 54) 82352 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 228.833-4 chr12 49489176 49489417 + 1.5 NA intron (NM_001293285, intron 5 of 14) intron (NM_001293285, intron 5 of 14) -49734 NM_001314030 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 470.834 chr1 40972336 40972858 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -7099 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 273.5-19 chr6 132019344 132019818 + 1.5 NA Intergenic Intergenic -68209 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 253.167-4 chr13 69179072 69179304 + 1.5 NA Intergenic Intergenic -43158 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 442.5 chr18 4185608 4185990 + 1.5 NA intron (NM_001242761, intron 1 of 11) L1PREC2|LINE|L1 -78803 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 203-26 chr4 39287998 39288239 + 1.5 NA 3' UTR (NM_001363496, exon 24 of 24) 3' UTR (NM_001363496, exon 24 of 24) 78244 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 290.5-9 chr19 7197145 7197460 + 1.5 NA intron (NM_001079817, intron 2 of 20) CpG 97112 NM_001079817 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 295.501 chr12 43644274 43644504 + 1.5 NA Intergenic Intergenic -92186 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 384.5-12 chr7 129298364 129298857 + 1.5 NA intron (NM_001130720, intron 1 of 16) intron (NM_001130720, intron 1 of 16) -69770 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 256.5-18 chr21 21476264 21476449 + 1.5 NA intron (NM_001352592, intron 15 of 18) MIR|SINE|MIR 260963 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 308.333-9 chr2 82411665 82411992 + 1.5 NA Intergenic Intergenic -444975 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 208-5 chr1 226968329 226968573 + 1.5 NA intron (NM_020247, intron 4 of 14) Charlie9|DNA|hAT-Charlie 28157 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 235-16 chr2 66850245 66850450 + 1.5 NA Intergenic Intergenic -54089 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 216-45 chr6 162394668 162394898 + 1.5 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -332349 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 468.833-7 chr5 145238034 145238476 + 1.5 NA Intergenic MIRc|SINE|MIR 597087 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 232.5-14 chr2 81000736 81001086 + 1.5 NA Intergenic L1M1|LINE|L1 466035 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 214.5-20 chr2 116161085 116161340 + 1.5 NA Intergenic PRIMA41-int|LTR|ERV1 817397 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 396.5-5 chr4 151417851 151418172 + 1.5 NA intron (NM_001348694, intron 1 of 12) AluJr|SINE|Alu 8835 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 244-4 chr12 67726466 67726872 + 1.5 NA intron (NR_110063, intron 1 of 4) intron (NR_110063, intron 1 of 4) 2806 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 256-16 chr2 162711093 162711318 + 1.5 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -57731 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 287.667-16 chr2 51437434 51437873 + 1.5 NA intron (NR_135237, intron 4 of 10) L1MC2|LINE|L1 405052 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 323.5-19 chr9 12727288 12727699 + 1.5 NA intron (NR_125775, intron 3 of 3) intron (NR_125775, intron 3 of 3) 34108 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 296.667-18 chr5 29010989 29011261 + 1.5 NA Intergenic MER46C|DNA|TcMar-Tigger -54119 NR_109948 101929645 Hs.531878 NR_109948 LOC101929645 - uncharacterized LOC101929645 ncRNA 169-51 chrX 103152279 103152398 + 1.5 NA Intergenic Intergenic -59195 NM_022052 56000 Hs.60386 NM_022052 ENSG00000147206 NXF3 - nuclear RNA export factor 3 protein-coding 239.334-5 chr16 84085027 84085242 + 1.5 NA exon (NM_003791, exon 10 of 23) exon (NM_003791, exon 10 of 23) 31808 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 253.5-11 chr13 84917207 84917404 + 1.5 NA Intergenic Intergenic 133651 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 253.167-19 chr5 118989198 118989457 + 1.5 NA promoter-TSS (NM_173666) promoter-TSS (NM_173666) -780 NM_173666 285605 Hs.655891 NM_173666 ENSG00000169570 DTWD2 - DTW domain containing 2 protein-coding 244-13 chr2 81481476 81481684 + 1.5 NA Intergenic LTR2752|LTR|ERV1 -14634 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 273.5-5 chr11 89405785 89406129 + 1.5 NA intron (NM_001143837, intron 11 of 20) intron (NM_001143837, intron 11 of 20) 84803 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 353-7 chr18 74655982 74656357 + 1.5 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 25206 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 228-3 chr1 68341777 68342051 + 1.5 NA Intergenic MER39|LTR|ERV1 108040 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 317.833-6 chr19 35109946 35110217 + 1.5 NA Intergenic Intergenic -3777 NR_024562 100128675 Hs.633989 NR_024561 ENSG00000227392 HPN-AS1 - HPN antisense RNA 1 ncRNA 280.5-22 chr8 120942251 120942736 + 1.5 NA Intergenic MamRep434|DNA|TcMar-Tigger -130447 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 226.167-28 chrX 45070604 45070819 + 1.5 NA intron (NR_111960, intron 16 of 27) intron (NR_111960, intron 16 of 27) 130165 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 292.5-6 chr12 8106301 8106545 + 1.5 NA Intergenic L1PREC2|LINE|L1 -17209 NM_194450 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 459.167-7 chr8 124023244 124023830 + 1.5 NA exon (NM_001039112, exon 18 of 41) exon (NM_001039112, exon 18 of 41) 17245 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 171.5-48 chr9 71195254 71195406 + 1.5 NA intron (NM_001366143, intron 1 of 25) L1PREC2|LINE|L1 -73709 NM_001366149 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 430.999 chr1 213121373 213121860 + 1.5 NA intron (NM_001349665, intron 4 of 10) intron (NM_001349665, intron 4 of 10) 70375 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 303-9 chr18 62781971 62782707 + 1.5 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 66798 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 209-6 chr10 96588757 96588990 + 1.5 NA Intergenic L2c|LINE|L2 -1861 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 322.5-22 chr5 19911825 19912070 + 1.5 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -25675 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 423.167-10 chr9 10045835 10046133 + 1.5 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 246592 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 308.167-14 chr6 139336738 139336943 + 1.5 NA Intergenic MER89-int|LTR|ERV1 37373 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 432.834-3 chr14 36971024 36971412 + 1.5 NA intron (NM_001171170, intron 1 of 10) LTR9|LTR|ERV1 -18827 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 456.167 chr1 22861996 22862692 + 1.5 NA TTS (NR_036214) TTS (NR_036214) 882 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 430.667 chr1 48572579 48573082 + 1.5 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -100622 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 251.5-3 chr1 108659049 108659308 + 1.5 NA intron (NM_001102592, intron 2 of 7) Charlie5|DNA|hAT-Charlie 1915 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 278.667 chr1 110548946 110549391 + 1.5 NA Intergenic MIRb|SINE|MIR -29993 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 199.5-28 chr2 182520113 182520259 + 1.5 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 2340 NM_005019 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 299-16 chr5 110725245 110725750 + 1.5 NA intron (NM_001039763, intron 1 of 13) intron (NM_001039763, intron 1 of 13) 1174 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 322.667-4 chr10 101032099 101032318 + 1.5 NA intron (NM_030971, intron 1 of 11) intron (NM_030971, intron 1 of 11) 969 NM_030971 81855 Hs.283844 NM_030971 ENSG00000107819 SFXN3 BA108L7.2|SFX3|SLC56A3 sideroflexin 3 protein-coding 514.667-4 chr14 22871133 22872104 + 1.5 NA promoter-TSS (NM_014045) promoter-TSS (NM_014045) -122 NM_001329226 26020 Hs.525232 NM_014045 ENSG00000197324 LRP10 LRP-10|LRP9|MST087|MSTP087 LDL receptor related protein 10 protein-coding 203.167-9 chr16 76295667 76295923 + 1.5 NA intron (NR_136213, intron 1 of 23) intron (NR_136213, intron 1 of 23) -14057 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 753.999 chr19 50356992 50357996 + 1.5 NA TTS (NM_004851) TTS (NM_004851) 8145 NM_004851 9476 Hs.512843 NM_004851 ENSG00000131400 NAPSA KAP|Kdap|NAP1|NAPA|SNAPA napsin A aspartic peptidase protein-coding 189.833-17 chr7 15334375 15334632 + 1.5 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 227512 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 358.999 chr18 21799260 21799594 + 1.5 NA intron (NM_020774, intron 8 of 20) intron (NM_020774, intron 8 of 20) 26358 NR_029675 406922 NR_029675 ENSG00000283927 MIR133A1 MIRN133A1|mir-133a-1 microRNA 133a-1 ncRNA 229.5-5 chr11 93248767 93248961 + 1.5 NA Intergenic Intergenic -50873 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 244.833-9 chr9 8591258 8591544 + 1.5 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 142545 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 540.5 chr14 51647067 51647787 + 1.5 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) 4317 NR_037676 145438 Hs.645410 NR_037676 ENSG00000273888 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 214.833-8 chr18 12098415 12098611 + 1.5 NA intron (NM_001277333, intron 5 of 13) U6|snRNA|snRNA 4670 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 280.501-7 chr3 70242740 70242970 + 1.5 NA intron (NM_001364676, intron 2 of 4) intron (NM_001364676, intron 2 of 4) 69783 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 347.5-15 chr9 31807545 31807791 + 1.5 NA Intergenic HUERS-P2-int|LTR|ERV1 -426178 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 277-10 chr14 52439653 52440052 + 1.5 NA intron (NM_001160047, intron 19 of 20) intron (NM_001160047, intron 19 of 20) 112653 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 302-5 chr10 118360585 118360981 + 1.5 NA Intergenic Intergenic 3675 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 250-33 chr7 29086446 29086677 + 1.5 NA intron (NM_001371256, intron 10 of 16) intron (NM_001371256, intron 10 of 16) -38472 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 163.5-42 chr6 47700958 47701149 + 1.5 NA intron (NM_153838, intron 1 of 9) intron (NM_153838, intron 1 of 9) 2473 NM_153838 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 300.834 chr1 58522159 58522450 + 1.5 NA intron (NM_145243, intron 7 of 8) L1PA11|LINE|L1 24422 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 367.333 chr10 34771387 34771742 + 1.5 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 43732 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 280.333-23 chr7 30239248 30239618 + 1.5 NA Intergenic Intergenic -45164 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 237.5-15 chr14 74781004 74781332 + 1.5 NA intron (NM_019589, intron 3 of 20) intron (NM_019589, intron 3 of 20) 17852 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 214.167-32 chr8 74984430 74984708 + 1.5 NA promoter-TSS (NM_031461) promoter-TSS (NM_031461) 64 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 334.833-3 chr1 203338546 203338882 + 1.5 NA Intergenic Intergenic 12408 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 271.167-9 chr17 75121847 75122154 + 1.5 NA intron (NM_024585, intron 2 of 2) L1ME3A|LINE|L1 9742 NR_045513 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 167.167-14 chr11 111901788 111901937 + 1.5 NA Intergenic L1MEi|LINE|L1 8877 NM_001368246 1410 Hs.53454 NM_001885 ENSG00000109846 CRYAB CMD1II|CRYA2|CTPP2|CTRCT16|HEL-S-101|HSPB5|MFM2 crystallin alpha B protein-coding 325.5-8 chr16 74304783 74305023 + 1.5 NA intron (NM_002811, intron 6 of 6) intron (NM_002811, intron 6 of 6) 8089 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 238-3 chr1 201898626 201898842 + 1.5 NA intron (NM_012134, intron 2 of 2) intron (NM_012134, intron 2 of 2) 10057 NM_198149 149345 Hs.632471 NM_198149 ENSG00000198892 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 267-8 chr11 103259949 103260128 + 1.5 NA intron (NM_001377, intron 70 of 88) intron (NM_001377, intron 70 of 88) 150612 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 185.5-11 chr11 129861849 129862025 + 1.5 NA Intergenic Intergenic 31072 NM_006165 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 342.833-13 chr21 32914868 32915175 + 1.5 NA Intergenic L1MEi|LINE|L1 -43867 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 306.5-16 chr4 6548670 6548988 + 1.5 NA intron (NM_001206994, intron 1 of 9) ERV3-16A3_LTR|LTR|ERVL 6786 NM_001206995 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 264.333-23 chr4 48141469 48141655 + 1.5 NA intron (NM_003215, intron 14 of 17) intron (NM_003215, intron 14 of 17) -7312 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 248.833-24 chr6 71277347 71277538 + 1.5 NA Intergenic Intergenic -11369 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 327.333-2 chr10 12400434 12400696 + 1.5 NA intron (NM_001351032, intron 2 of 11) intron (NM_001351032, intron 2 of 11) 11583 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 242.5-36 chr5 29313518 29313704 + 1.5 NA Intergenic Intergenic 82365 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 425.833-3 chr14 66507300 66507998 + 1.5 NA 5' UTR (NM_020806, exon 1 of 23) 5' UTR (NM_020806, exon 1 of 23) 242 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 216-48 chr8 90387953 90388124 + 1.5 NA TTS (NR_051989) TTS (NR_051989) 166550 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 475.667-2 chr13 75586248 75586856 + 1.5 NA intron (NM_006002, intron 6 of 8) L1MEf|LINE|L1 -33882 NM_005358 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 398.5-3 chr12 7358766 7359581 + 1.5 NA intron (NM_001297650, intron 18 of 19) L1MCa|LINE|L1 54841 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 198-27 chr21 28268973 28269242 + 1.5 NA Intergenic Intergenic -40440 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 173.333-36 chr9 12716871 12717059 + 1.5 NA intron (NR_125775, intron 3 of 3) intron (NR_125775, intron 3 of 3) 23580 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 299.833-11 chr2 60794168 60794613 + 1.5 NA intron (NM_022894, intron 19 of 21) intron (NM_022894, intron 19 of 21) 38122 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 254-20 chr5 42251583 42251904 + 1.5 NA Intergenic Intergenic -76398 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 256.5-7 chr11 95811673 95811909 + 1.5 NA intron (NM_014679, intron 2 of 10) intron (NM_014679, intron 2 of 10) 21293 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 278.667-31 chr8 80363029 80363392 + 1.5 NA Intergenic Intergenic 121821 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 183.833-9 chr12 85961748 85961977 + 1.5 NA 3' UTR (NM_001351289, exon 6 of 6) 3' UTR (NM_001351289, exon 6 of 6) 87567 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 308.167-17 chr8 82659489 82659789 + 1.5 NA Intergenic Intergenic -252465 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 342.833-3 chr12 58443720 58443992 + 1.5 NA Intergenic Intergenic -147846 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 847 chr14 77320341 77321305 + 1.5 NA promoter-TSS (NM_145870) promoter-TSS (NM_145870) 59 NM_013382 29954 Hs.132989 NM_013382 ENSG00000009830 POMT2 LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2 protein O-mannosyltransferase 2 protein-coding 205.833-11 chr14 69400399 69400740 + 1.5 NA intron (NM_001330185, intron 1 of 5) intron (NM_001330185, intron 1 of 5) 1877 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 341.666 chr14 88469711 88470088 + 1.5 NA intron (NM_007039, intron 16 of 18) intron (NM_007039, intron 16 of 18) 84242 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 164-19 chr14 59144173 59144282 + 1.5 NA Intergenic Intergenic -44440 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 304-6 chr12 57890822 57891185 + 1.5 NA intron (NR_148947, intron 1 of 3) intron (NR_148947, intron 1 of 3) 5479 NR_148947 283387 Hs.727244 NR_148947 ENSG00000245651 LOC283387 - uncharacterized LOC283387 ncRNA 358.167-12 chr7 33891697 33892101 + 1.5 NA Intergenic Intergenic -13016 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 314-8 chr17 29243876 29244135 + 1.5 NA Intergenic Intergenic -2852 NM_005208 1411 Hs.46275 NM_005208 ENSG00000108255 CRYBA1 CRYB1|CTRCT10 crystallin beta A1 protein-coding 254.667-29 chr5 168621262 168621433 + 1.5 NA Intergenic MIR|SINE|MIR -41979 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 242.5-12 chr11 107576084 107576254 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -10434 NM_001301010 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 611.834 chr12 110894313 110894852 + 1.5 NA intron (NM_152591, intron 9 of 11) intron (NM_152591, intron 9 of 11) 26018 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 209.5-36 chr8 143907591 143907754 + 1.5 NA Intergenic L1M4|LINE|L1 -29208 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 268.667-10 chr14 83281098 83281290 + 1.5 NA Intergenic L1MC4|LINE|L1 638562 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 232.667-15 chr17 73448009 73448364 + 1.5 NA intron (NM_001144952, intron 4 of 44) intron (NM_001144952, intron 4 of 44) -65497 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 260-12 chr16 66830745 66831245 + 1.5 NA promoter-TSS (NM_001018160) promoter-TSS (NM_001018160) -19 NM_001286500 8883 Hs.460978 NM_003905 ENSG00000159593 NAE1 A-116A10.1|APPBP1|HPP1|ula-1 NEDD8 activating enzyme E1 subunit 1 protein-coding 282.5-13 chr3 160731031 160731574 + 1.5 NA Intergenic MER21C|LTR|ERVL -24929 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 282.834-3 chr15 26012723 26012945 + 1.5 NA intron (NR_040082, intron 1 of 4) L1MEd|LINE|L1 -102979 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 349.667-3 chr14 70351715 70352151 + 1.5 NA intron (NM_001202548, intron 3 of 5) intron (NM_001202548, intron 3 of 5) 7750 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 346.5-12 chr7 38202216 38202575 + 1.5 NA intron (NM_001363346, intron 3 of 9) intron (NM_001363346, intron 3 of 9) 24150 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 267.667-10 chr17 61047252 61047587 + 1.5 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 320285 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 282.167-10 chr4 116956620 116956830 + 1.5 NA Intergenic L1PB4|LINE|L1 128851 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 291.5-28 chr5 24635048 24635350 + 1.5 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 9779 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 422-9 chr3 96481721 96482149 + 1.5 NA Intergenic Intergenic 121971 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 667.833 chr2 20279668 20280771 + 1.5 NA intron (NM_001352919, intron 12 of 20) intron (NM_001352919, intron 12 of 20) 47167 NM_001282790 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 370.5-12 chr7 53950283 53950751 + 1.5 NA Intergenic L1MC4|LINE|L1 -138586 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 213.667-47 chr8 140178940 140179197 + 1.5 NA intron (NM_001160372, intron 17 of 22) L1ME1|LINE|L1 -78533 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 166.833-9 chr15 57640887 57641167 + 1.5 NA intron (NR_104370, intron 10 of 11) intron (NR_104370, intron 10 of 11) 49123 NR_104369 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 300.5-13 chr2 64223361 64223615 + 1.5 NA Intergenic Intergenic -4913 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 272.5-15 chr19 1503662 1503852 + 1.5 NA Intergenic CpG 9262 NM_001367197 339366 Hs.371674 NM_213604 ENSG00000185761 ADAMTSL5 THSD6 ADAMTS like 5 protein-coding 322.5-24 chr6 11471708 11472068 + 1.5 NA Intergenic Intergenic -65861 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 224-36 chr4 167462013 167462257 + 1.5 NA Intergenic L1MDa|LINE|L1 -227545 NM_001204352 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 223.333-48 chr8 135235723 135235958 + 1.5 NA intron (NR_120396, intron 1 of 4) MIRc|SINE|MIR 1709 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 191.833-26 chr9 21084766 21085040 + 1.5 NA Intergenic L1M5|LINE|L1 -6961 NM_002176 3456 Hs.93177 NM_002176 ENSG00000171855 IFNB1 IFB|IFF|IFN-beta|IFNB interferon beta 1 protein-coding 221.5-22 chr5 57173836 57174267 + 1.5 NA promoter-TSS (NM_022913) promoter-TSS (NM_022913) -8 NM_022913 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 329.667-11 chr7 45260094 45260571 + 1.5 NA Intergenic Intergenic 102541 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 245.667-9 chr17 9429125 9429350 + 1.5 NA intron (NM_004853, intron 6 of 7) intron (NM_004853, intron 6 of 7) 146583 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 206.333-20 chr2 121360472 121360723 + 1.5 NA intron (NM_015282, intron 36 of 38) A-rich|Low_complexity|Low_complexity -75395 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 272.333-3 chr11 95926053 95926331 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger -1985 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 319.5-7 chr16 81889796 81890092 + 1.5 NA intron (NM_002661, intron 10 of 32) AluSx3|SINE|Alu 110653 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 450.833 chr11 57459800 57460615 + 1.5 NA promoter-TSS (NM_178570) promoter-TSS (NM_178570) -321 NM_178570 349667 Hs.502618 NM_178570 ENSG00000186907 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor like 2 protein-coding 312-14 chr2 81474393 81474624 + 1.5 NA Intergenic L1MEd|LINE|L1 -7562 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 267-7 chr11 32640188 32640581 + 1.5 NA intron (NM_001008391, intron 13 of 17) intron (NM_001008391, intron 13 of 17) 56553 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 301.166-4 chr13 73722231 73722830 + 1.5 NA intron (NM_007249, intron 6 of 7) intron (NM_007249, intron 6 of 7) 158286 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 357-14 chr4 155445365 155445794 + 1.5 NA Intergenic Intergenic -68614 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 305.667-2 chr1 237717039 237717435 + 1.5 NA exon (NM_001035, exon 72 of 105) exon (NM_001035, exon 72 of 105) -144938 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 247.667-37 chrX 76434719 76435122 + 1.5 NA Intergenic Intergenic 7210 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 291-4 chr10 33133993 33134313 + 1.5 NA Intergenic Intergenic -17346 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 376.333-10 chr6 35585314 35585780 + 1.5 NA 3' UTR (NM_001145777, exon 7 of 7) 3' UTR (NM_001145777, exon 7 of 7) -72651 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 246.333-11 chr12 6980631 6980907 + 1.5 NA TTS (NM_006331) TTS (NM_006331) 9856 NR_135131 10436 Hs.558447 NM_006331 ENSG00000126749 EMG1 C2F|Grcc2f|NEP1 EMG1 N1-specific pseudouridine methyltransferase protein-coding 431.5-6 chr7 112120475 112120881 + 1.5 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 85721 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 233.833-9 chr15 99578913 99579111 + 1.5 NA intron (NM_001352616, intron 1 of 10) Tigger9b|DNA|TcMar-Tigger 12529 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 294-6 chr15 27614454 27615007 + 1.5 NA Intergenic L1MC3|LINE|L1 -453411 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 286.5-11 chr5 4192699 4192971 + 1.5 NA Intergenic Intergenic -580646 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 259.5-19 chr2 183720058 183720318 + 1.5 NA Intergenic Intergenic 595745 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 385-5 chr2 37063043 37063362 + 1.5 NA intron (NM_019024, intron 10 of 35) MIR|SINE|MIR 21170 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 410.5 chr2 38938493 38938917 + 1.5 NA intron (NM_001145451, intron 7 of 15) L1MB8|LINE|L1 19342 NM_001367623 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 212.5-5 chr1 176811945 176812194 + 1.5 NA intron (NM_020318, intron 21 of 22) intron (NM_020318, intron 21 of 22) 217376 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 256.667-14 chr19 48957558 48957847 + 1.5 NA intron (NM_138761, intron 4 of 5) Tigger5b|DNA|TcMar-Tigger 2827 NM_138761 581 Hs.624291 NM_004324 ENSG00000087088 BAX BCL2L4 BCL2 associated X, apoptosis regulator protein-coding 268.666-6 chr5 52947774 52948041 + 1.5 NA intron (NM_181501, intron 28 of 28) intron (NM_181501, intron 28 of 28) -41445 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 233-4 chr10 25447258 25447450 + 1.5 NA intron (NM_020752, intron 4 of 10) MIRb|SINE|MIR -204358 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 216.333-18 chr16 86777051 86777212 + 1.5 NA Intergenic Intergenic 55040 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 416.5 chr11 68457042 68457448 + 1.5 NA Intergenic Intergenic -3507 NR_147970 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 247-8 chr12 116708997 116709490 + 1.5 NA TTS (NM_001353625) TTS (NM_001353625) 28826 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 422.5-2 chr10 63330308 63330771 + 1.5 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) 42509 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 268.834-8 chr7 22566588 22566851 + 1.5 NA intron (NR_038393, intron 2 of 3) L2a|LINE|L2 3382 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 317.167-5 chr12 40336353 40336778 + 1.5 NA intron (NM_198578, intron 40 of 50) intron (NM_198578, intron 40 of 50) -56829 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 175-27 chr2 99448029 99448252 + 1.5 NA intron (NR_135652, intron 4 of 21) intron (NR_135652, intron 4 of 21) 41877 NM_001037872 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 422-5 chr12 112257274 112257658 + 1.5 NA intron (NM_001109662, intron 20 of 75) L1MA10|LINE|L1 -94145 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 267-14 chr14 67816658 67816977 + 1.5 NA promoter-TSS (NM_015346) promoter-TSS (NM_015346) -227 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 349-16 chr7 110219021 110219634 + 1.5 NA Intergenic L1P4|LINE|L1 -259114 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 231-28 chr7 37571402 37571676 + 1.5 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -112227 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 277.5-11 chr2 202385761 202386006 + 1.5 NA intron (NM_001204, intron 1 of 12) L1ME4c|LINE|L1 9556 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 216.167-15 chr14 50364378 50364580 + 1.5 NA intron (NM_001282236, intron 2 of 8) AluSx|SINE|Alu 32402 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 209.167-18 chr18 10504281 10504577 + 1.5 NA Intergenic L1MB5|LINE|L1 -21598 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 279.5-23 chr9 127955241 127955657 + 1.5 NA intron (NM_001035254, intron 1 of 10) intron (NM_001035254, intron 1 of 10) -4735 NM_203305 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 248.834-4 chr14 70535951 70536131 + 1.5 NA Intergenic L1M5|LINE|L1 -1037 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 239.5-20 chr2 61510688 61510932 + 1.5 NA intron (NM_003400, intron 4 of 24) AluJo|SINE|Alu 27546 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 371.666-4 chr9 130712659 130713043 + 1.5 NA Intergenic CpG -1030 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 684.167 chr3 16178022 16178987 + 1.5 NA intron (NM_001319051, intron 1 of 9) intron (NM_001319051, intron 1 of 9) 3824 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 276.333-13 chr7 120429808 120430159 + 1.5 NA intron (NM_012281, intron 1 of 5) Charlie1a|DNA|hAT-Charlie 156808 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 309-9 chr14 44079099 44079419 + 1.5 NA Intergenic Intergenic 428024 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 327.833-12 chr5 98839925 98840397 + 1.5 NA Intergenic LTR25-int|LTR|ERV1 66498 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 342.667-2 chr10 26017514 26018228 + 1.5 NA intron (NM_001368265, intron 7 of 7) intron (NM_001368265, intron 7 of 7) 83642 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 229.5-23 chr22 37779191 37779367 + 1.5 NA Intergenic AluSx1|SINE|Alu -25828 NM_005318 3005 Hs.745024 NM_005318 ENSG00000189060 H1F0 H10|H1FV H1 histone family member 0 protein-coding 427-4 chr16 89490633 89491111 + 1.5 NA promoter-TSS (NM_013275) promoter-TSS (NM_013275) -311 NM_001256182 29123 Hs.335003 NM_013275 ENSG00000167522 ANKRD11 ANCO-1|ANCO1|LZ16|T13 ankyrin repeat domain 11 protein-coding 350.833-8 chr6 54689671 54690010 + 1.5 NA Intergenic MER67C|LTR|ERV1 -156931 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 272.667-9 chr11 34364410 34364701 + 1.5 NA Intergenic Intergenic -6545 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 287.5-17 chr5 17774599 17774857 + 1.5 NA Intergenic L1M5|LINE|L1 -32546 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 227.333-2 chr1 62675808 62676034 + 1.5 NA intron (NM_001367561, intron 1 of 49) L1MB7|LINE|L1 12447 NM_001271999 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 273.5-18 chr5 163867727 163868110 + 1.5 NA Intergenic Intergenic 362299 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 440-5 chr12 119238974 119239354 + 1.5 NA Intergenic Intergenic 60374 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 333.5-15 chr3 42139763 42140074 + 1.5 NA intron (NM_001349247, intron 2 of 16) intron (NM_001349247, intron 2 of 16) -9317 NM_001265610 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 378-14 chr2 102355820 102356315 + 1.5 NA promoter-TSS (NM_001282399) promoter-TSS (NM_001282399) -216 NM_003855 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 261.833-8 chr17 48670309 48670698 + 1.5 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -37944 NR_029582 406972 NR_029582 ENSG00000210741 MIR196A1 MIRN196-1|MIRN196A1|mir-196a-1 microRNA 196a-1 ncRNA 287.333-16 chr6 7992260 7992560 + 1.5 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) 6308 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 455.833 chr12 49336945 49337564 + 1.5 NA promoter-TSS (NM_001008223) promoter-TSS (NM_001008223) -66 NM_001008223 338761 Hs.380386 NM_001008223 ENSG00000186897 C1QL4 C1QTNF11|CTRP11 complement C1q like 4 protein-coding 256.167-5 chr1 163539687 163539926 + 1.5 NA Intergenic Intergenic -116615 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 231.334-4 chr5 27251092 27251381 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger -212650 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 340-20 chr8 121229874 121230191 + 1.5 NA Intergenic Intergenic -409314 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 308.833-13 chr6 95091809 95092051 + 1.5 NA Intergenic Intergenic 485521 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 241-26 chr5 78106869 78107227 + 1.5 NA intron (NM_003664, intron 20 of 26) intron (NM_003664, intron 20 of 26) 148801 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 309.167-15 chr6 51618544 51618893 + 1.5 NA 3' UTR (NM_138694, exon 67 of 67) 3' UTR (NM_138694, exon 67 of 67) -3152 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 182.5-20 chr18 72206855 72206988 + 1.5 NA Intergenic L4_B_Mam|LINE|RTE-X 337421 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 223.334-6 chr6 42591842 42592065 + 1.5 NA intron (NM_015255, intron 2 of 46) intron (NM_015255, intron 2 of 46) 27924 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 265.667-18 chr5 167049229 167049623 + 1.5 NA Intergenic Intergenic -23816 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 477.5-6 chr6 11172430 11173048 + 1.5 NA Intergenic Intergenic 59929 NM_006403 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 267 chr1 65483194 65483434 + 1.5 NA intron (NM_001003679, intron 2 of 19) L1ME4c|LINE|L1 -42337 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 278-10 chr14 69597602 69598008 + 1.5 NA Intergenic Intergenic -13791 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 342.167-5 chr20 47441213 47441625 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -29275 NR_146496 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 278.5-19 chr6 119117095 119117400 + 1.5 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) 31946 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 286.5-15 chr7 123962107 123962574 + 1.5 NA intron (NM_003117, intron 5 of 6) L1MA5|LINE|L1 -32282 NR_133947 105375483 Hs.435972 NR_133947 ENSG00000241345 LOC105375483 - uncharacterized LOC105375483 ncRNA 319.334-12 chr6 36390215 36390472 + 1.5 NA TTS (NM_152990) TTS (NM_152990) -2543 NM_001207037 51513 Hs.272398 NM_016135 ENSG00000010030 ETV7 TEL-2|TEL2|TELB ETS variant 7 protein-coding 237-5 chr1 237654762 237655072 + 1.5 NA intron (NM_001035, intron 52 of 104) intron (NM_001035, intron 52 of 104) 183798 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 227.5-32 chr7 17849719 17849924 + 1.5 NA intron (NM_001350862, intron 11 of 25) L2a|LINE|L2 90673 NM_001350863 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 223.667-7 chr10 56243047 56243492 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 117990 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 300.334-2 chr11 119067584 119068033 + 1.5 NA promoter-TSS (NM_001290185).2 promoter-TSS (NM_001290185).2 -10 NM_001290185 55823 Hs.234282 NM_021729 ENSG00000160695 VPS11 END1|HLD12|PEP5|RNF108|hVPS11 VPS11 core subunit of CORVET and HOPS complexes protein-coding 507.001-3 chr9 126774550 126775318 + 1.5 NA Intergenic AluY|SINE|Alu -30072 NM_001135776 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 566.833 chr5 177111690 177112438 + 1.5 NA Intergenic Intergenic -21015 NM_172349 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 538.833 chr20 52083382 52083875 + 1.5 NA TTS (NM_001319146) TTS (NM_001319146) 21856 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 209-35 chr7 116802275 116802461 + 1.5 NA Intergenic Intergenic -60219 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 198.667-32 chr3 42782999 42783350 + 1.5 NA 3' UTR (NM_001099669, exon 4 of 4) 3' UTR (NM_001099669, exon 4 of 4) -9921 NM_144719 152206 Hs.604182 NM_144719 ENSG00000244607 CCDC13 - coiled-coil domain containing 13 protein-coding 252-23 chr15 61826145 61826576 + 1.5 NA Intergenic L1ME4b|LINE|L1 96442 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 233.334-11 chr9 69082703 69083069 + 1.5 NA Intergenic Intergenic -38378 NM_001170414 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 419.5-8 chr8 13034104 13034491 + 1.5 NA Intergenic AluJr4|SINE|Alu 22033 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 270.5-23 chr22 26691598 26691822 + 1.5 NA intron (NR_110543, intron 1 of 5) L2c|LINE|L2 18867 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 422-10 chr6 91677927 91678240 + 1.5 NA intron (NR_104154, intron 2 of 3) intron (NR_104154, intron 2 of 3) 12345 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 360-13 chr4 78848373 78848797 + 1.5 NA intron (NM_017593, intron 6 of 13) intron (NM_017593, intron 6 of 13) 72207 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 624.833-2 chr19 29771475 29772122 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -40193 NM_001322259 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 206.333-7 chr1 248055682 248055884 + 1.5 NA intron (NM_001304535, intron 1 of 1) AluSx3|SINE|Alu -4899 NM_001004687 391192 Hs.690412 NM_001004687 ENSG00000198128 OR2L3 - olfactory receptor family 2 subfamily L member 3 protein-coding 320.501 chr14 70804868 70805235 + 1.5 NA intron (NM_033141, intron 1 of 12) intron (NM_033141, intron 1 of 12) 4120 NM_001284230 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 182.667-50 chr8 143000483 143000726 + 1.5 NA intron (NR_026913, intron 1 of 1) MER83B-int|LTR|ERV1 4776 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 286.5-3 chr11 109919729 109920006 + 1.5 NA Intergenic L1MC1|LINE|L1 -173525 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 266.167-4 chr3 181513340 181513624 + 1.5 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -70996 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 348.667-8 chr4 64538141 64538637 + 1.5 NA Intergenic AluSc|SINE|Alu -128929 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 282-26 chr6 151370634 151370934 + 1.5 NA intron (NM_020861, intron 2 of 2) intron (NM_020861, intron 2 of 2) 20775 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 380.5-11 chr5 78899572 78900046 + 1.5 NA intron (NM_198709, intron 5 of 7) L1M3f|LINE|L1 85501 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 171-56 chr7 158164060 158164257 + 1.5 NA intron (NM_130843, intron 6 of 21) intron (NM_130843, intron 6 of 21) 309573 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 434-2 chr10 94217729 94218257 + 1.5 NA intron (NM_001165979, intron 3 of 31) Kanga1d|DNA|TcMar-Tc2 69077 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 416.667-3 chr1 212288739 212289249 + 1.5 NA intron (NM_006243, intron 1 of 12) intron (NM_006243, intron 1 of 12) 3584 NM_006243 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 212-16 chr11 113916679 113916842 + 1.5 NA intron (NM_006028, intron 2 of 8) L1ME1|LINE|L1 7919 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 334-9 chr20 50557193 50557526 + 1.5 NA intron (NM_001278618, intron 1 of 8) AluJb|SINE|Alu -28427 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 304.5-6 chr10 29155829 29156152 + 1.5 NA Intergenic Intergenic -133080 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 285-3 chr10 74136142 74136550 + 1.5 NA intron (NM_001320265, intron 3 of 8) intron (NM_001320265, intron 3 of 8) 14482 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 274-29 chr7 1202871 1203076 + 1.5 NA Intergenic AluJr|SINE|Alu -29899 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 338.167-5 chr17 54285277 54285823 + 1.5 NA Intergenic Intergenic 462623 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 220.001-2 chr15 60444346 60444579 + 1.5 NA intron (NR_147171, intron 11 of 16) intron (NR_147171, intron 11 of 16) 34680 NR_147171 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 435-2 chr5 172660084 172660436 + 1.5 NA intron (NM_001308177, intron 1 of 3) intron (NM_001308177, intron 1 of 3) -1905 NR_049799 100847029 NR_049799 ENSG00000265160 MIR5003 - microRNA 5003 ncRNA 271.667-7 chr11 109989479 109989717 + 1.5 NA Intergenic L1MB2|LINE|L1 -103794 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 295.833-6 chr3 80786177 80786486 + 1.5 NA intron (NR_147143, intron 3 of 4) intron (NR_147143, intron 3 of 4) 15627 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 174-35 chr3 26863903 26864078 + 1.5 NA Intergenic Intergenic 169433 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 427-11 chr5 132164079 132164580 + 1.5 NA Intergenic L1MB7|LINE|L1 -20547 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 254.167-18 chr3 81836601 81837093 + 1.5 NA Intergenic Intergenic -75202 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 237.5-27 chr21 29432563 29432861 + 1.5 NA Intergenic Intergenic 60211 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 169.5-34 chr4 72875048 72875212 + 1.5 NA Intergenic Charlie24|DNA|hAT-Charlie 194586 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 272.167-9 chr17 67204619 67205018 + 1.5 NA intron (NM_001330447, intron 5 of 32) intron (NM_001330447, intron 5 of 32) -39958 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 200.833-19 chr18 54180243 54180565 + 1.5 NA intron (NM_003927, intron 3 of 6) intron (NM_003927, intron 3 of 6) 42008 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 328.5-3 chr17 17496771 17497236 + 1.5 NA promoter-TSS (NM_001199989) promoter-TSS (NM_001199989) -608 NM_001199989 51655 Hs.25829 NM_016084 ENSG00000108551 RASD1 AGS1|DEXRAS1|MGC:26290 ras related dexamethasone induced 1 protein-coding 214.333-11 chr12 65892206 65892464 + 1.5 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -10010 NR_158985 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 224-37 chr4 174116719 174116899 + 1.5 NA intron (NR_125896, intron 2 of 4) intron (NR_125896, intron 2 of 4) 103589 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 227-3 chr1 106557164 106557361 + 1.5 NA Intergenic L1MA3|LINE|L1 -260977 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 290.833-6 chr2 59684654 59684848 + 1.5 NA Intergenic Intergenic 467043 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 223.667-41 chr5 132751633 132751875 + 1.5 NA 3' UTR (NM_001098811, exon 10 of 10) 3' UTR (NM_001098811, exon 10 of 10) 4309 NM_001287252 645121 Hs.522057 NM_001039780 ENSG00000205089 CCNI2 - cyclin I family member 2 protein-coding 278-7 chr11 8133406 8133631 + 1.5 NA intron (NM_001346690, intron 4 of 6) intron (NM_001346690, intron 4 of 6) 35507 NR_144497 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 343.166-4 chr5 73150084 73150404 + 1.5 NA intron (NR_134252, intron 1 of 1) L1MC4|LINE|L1 348 NR_134252 105379030 NR_134252 ENSG00000251599 LOC105379030 - uncharacterized LOC105379030 ncRNA 237.667-6 chr12 13800805 13801076 + 1.5 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 179416 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 292.333-20 chr5 30330576 30330911 + 1.5 NA Intergenic Intergenic 450183 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 335.833-2 chr10 52559963 52560307 + 1.5 NA intron (NR_155748, intron 2 of 2) MIRc|SINE|MIR -89602 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 195-30 chr3 117417357 117417588 + 1.5 NA Intergenic Intergenic 273453 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 253.333-31 chr5 114339167 114339426 + 1.5 NA Intergenic Intergenic -22774 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 258.833 chr1 172468534 172468904 + 1.5 NA 3' UTR (NM_001300760, exon 5 of 5) 3' UTR (NM_001300760, exon 5 of 5) 15826 NM_001300760 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 377.5-9 chr7 47969061 47969615 + 1.5 NA intron (NM_004507, intron 5 of 7) intron (NM_004507, intron 5 of 7) 10277 NM_004507 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 569.334-2 chr16 57422266 57422852 + 1.5 NA Intergenic L1MB5|LINE|L1 17792 NM_002987 6361 Hs.546294 NM_002987 ENSG00000102970 CCL17 A-152E5.3|ABCD-2|SCYA17|TARC C-C motif chemokine ligand 17 protein-coding 411.167-2 chr12 2926539 2926941 + 1.5 NA intron (NM_003324, intron 4 of 10) AluSq2|SINE|Alu -32657 NM_003213 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 220.666-7 chr7 93242927 93243130 + 1.5 NA intron (NM_024553, intron 2 of 11) L3|LINE|CR1 10662 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 294.167-16 chr9 117685709 117686088 + 1.5 NA Intergenic Intergenic -18505 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 271.834-2 chr5 115596744 115597087 + 1.5 NA intron (NM_001164469, intron 3 of 3) AluY|SINE|Alu -5240 NR_109875 101927100 Hs.745340 NR_109874 LOC101927100 - uncharacterized LOC101927100 ncRNA 269.167-18 chr8 75830617 75830828 + 1.5 NA Intergenic Intergenic 290754 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 206.5-19 chr15 94533967 94534147 + 1.5 NA Intergenic Charlie1|DNA|hAT-Charlie 178127 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 419.833-3 chr17 10295640 10296262 + 1.5 NA Intergenic Intergenic 77055 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 440.334-4 chr5 93192150 93192685 + 1.5 NA Intergenic Intergenic 378926 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 454.667-4 chr17 67380114 67380641 + 1.5 NA intron (NM_181671, intron 1 of 9) (CCTT)n|Simple_repeat|Simple_repeat 3096 NM_181671 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein cytoplasmic 1 protein-coding 236.5-5 chr10 97445800 97446405 + 1.5 NA promoter-TSS (NR_134587) promoter-TSS (NR_134587) -29 NM_032327 84287 Hs.76662 NM_032327 ENSG00000171307 ZDHHC16 APH2|DHHC-16 zinc finger DHHC-type containing 16 protein-coding 212.5-12 chr12 72849953 72850222 + 1.5 NA Intergenic L2b|LINE|L2 -309103 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 326-13 chr5 2802641 2803083 + 1.5 NA Intergenic Intergenic 50731 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 352.834-8 chr4 36116156 36116694 + 1.5 NA intron (NR_146894, intron 25 of 32) intron (NR_146894, intron 25 of 32) 127514 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 279.666-4 chr15 82176484 82176924 + 1.5 NA intron (NM_001040610, intron 13 of 17) L1ME3A|LINE|L1 85824 NM_001322845 79631 Hs.459114 NM_024580 ENSG00000140598 EFL1 EFTUD1|FAM42A|HsT19294|RIA1|SDS2 elongation factor like GTPase 1 protein-coding 514.333-3 chr15 22838517 22838990 + 1.5 NA 5' UTR (NM_001184889, exon 1 of 10) 5' UTR (NM_001184889, exon 1 of 10) 112 NM_001184888 81614 Hs.591003 NM_030922 ENSG00000140157 NIPA2 SLC57A2 NIPA magnesium transporter 2 protein-coding 256.5-5 chr11 73185161 73185439 + 1.5 NA Intergenic Intergenic -32981 NM_002564 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 303-22 chrX 9165818 9166061 + 1.5 NA Intergenic L1ME1|LINE|L1 -131812 NM_205849 171483 Hs.733351 NM_173696 ENSG00000177138 FAM9B TEX39B family with sequence similarity 9 member B protein-coding 173.5-10 chr10 69996876 69997030 + 1.5 NA Intergenic CR1-16_AMi|LINE|CR1 -55893 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 247.333-6 chr15 65286694 65287023 + 1.5 NA promoter-TSS (NM_017851) promoter-TSS (NM_017851) 25 NM_001316944 54956 Hs.30634 NM_017851 ENSG00000138617 PARP16 ARTD15|C15orf30|pART15 poly(ADP-ribose) polymerase family member 16 protein-coding 403.167-4 chr5 33997459 33997890 + 1.5 NA intron (NR_037951, intron 8 of 8) intron (NR_037951, intron 8 of 8) 10376 NM_203382 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 375.5-6 chr5 74422054 74422322 + 1.5 NA intron (NR_126354, intron 2 of 2) MER57E1|LTR|ERV1 99702 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 181.5-30 chr3 136916543 136916681 + 1.5 NA intron (NM_001291999, intron 1 of 3) intron (NM_001291999, intron 1 of 3) -13890 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 279.667-3 chr10 68955366 68955807 + 1.5 NA promoter-TSS (NM_004728) promoter-TSS (NM_004728) -584 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 308.501-3 chr16 22077960 22078246 + 1.5 NA intron (NM_001164579, intron 2 of 2) intron (NM_001164579, intron 2 of 2) -14438 NM_173615 146177 Hs.10697 NM_173615 ENSG00000175267 VWA3A - von Willebrand factor A domain containing 3A protein-coding 311.5-2 chr1 219064950 219065270 + 1.5 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 108678 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 225.833-9 chr15 53808033 53808270 + 1.5 NA Intergenic MIR3|SINE|MIR -45273 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 377.833-3 chr14 74762915 74763353 + 1.5 NA promoter-TSS (NM_019589) promoter-TSS (NM_019589) -182 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 215-3 chr1 119742320 119742502 + 1.5 NA intron (NM_006623, intron 10 of 11) intron (NM_006623, intron 10 of 11) 26521 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 266-10 chr15 90467711 90468110 + 1.5 NA intron (NM_003870, intron 18 of 37) intron (NM_003870, intron 18 of 37) -62013 NM_001042574 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 212.333-13 chr18 61680471 61680685 + 1.5 NA Intergenic AluJb|SINE|Alu -67598 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 475.834-3 chr7 25027864 25028637 + 1.5 NA Intergenic Intergenic -48072 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 344.5-12 chr5 90474016 90474257 + 1.5 NA promoter-TSS (NM_006467) promoter-TSS (NM_006467) 207 NM_001370354 10622 Hs.282387 NM_006467 ENSG00000113356 POLR3G RPC32|RPC7 RNA polymerase III subunit G protein-coding 358.833-6 chr2 64202660 64203280 + 1.5 NA intron (NR_033837, intron 2 of 5) intron (NR_033837, intron 2 of 5) 2515 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 319.167-11 chr20 44992525 44992823 + 1.5 NA intron (NM_001352385, intron 5 of 11) AluJr4|SINE|Alu 26162 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 188.5-28 chr3 77298995 77299348 + 1.5 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 201159 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 317.5-7 chr19 6022455 6022710 + 1.5 NA intron (NM_134433, intron 5 of 16) intron (NM_134433, intron 5 of 16) 44179 NR_046376 100128568 Hs.624525 NR_046376 ENSG00000266983 LOC100128568 - uncharacterized LOC100128568 ncRNA 212-24 chr2 21328559 21328785 + 1.5 NA Intergenic L1MB8|LINE|L1 204686 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 232.5-6 chr11 10366609 10366888 + 1.5 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) 58435 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 272.833-15 chr3 190225007 190225330 + 1.5 NA Intergenic Intergenic 97278 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 249.5-18 chr4 124787150 124787566 + 1.5 NA Intergenic Intergenic -74626 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 166-17 chr12 52069552 52069679 + 1.5 NA promoter-TSS (NM_021934) promoter-TSS (NM_021934) -359 NM_021934 60673 Hs.9911 NM_021934 ENSG00000123395 ATG101 C12orf44 autophagy related 101 protein-coding 303.5 chr1 78136982 78137197 + 1.5 NA 3' UTR (NM_017655, exon 6 of 6) 3' UTR (NM_017655, exon 6 of 6) 91123 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 407.167-9 chr8 115071211 115071666 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL 596575 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 244.5-2 chr1 169394867 169395047 + 1.5 NA TTS (NM_001300968) TTS (NM_001300968) 26762 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 375.167-2 chr1 169105820 169106213 + 1.5 NA promoter-TSS (NM_001677) promoter-TSS (NM_001677) -674 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 333.834-7 chr9 94166720 94167221 + 1.5 NA Intergenic CpG -8987 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 333.5-16 chr3 118207258 118207599 + 1.5 NA Intergenic Intergenic -434340 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 717.833 chr12 30847099 30847755 + 1.5 NA Intergenic Intergenic 51746 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 173.5-41 chr3 125326632 125326799 + 1.5 NA intron (NM_001348426, intron 1 of 7) (TA)n|Simple_repeat|Simple_repeat 30565 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 291.833-12 chr5 122667420 122667717 + 1.5 NA intron (NR_109881, intron 8 of 11) MER103C|DNA|hAT-Charlie 62992 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 447.667-6 chr19 30222178 30222965 + 1.5 NA Intergenic CpG -149813 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 181.5-38 chr5 108314745 108314913 + 1.5 NA intron (NM_001163315, intron 4 of 8) MIRc|SINE|MIR 67269 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 209.166-2 chr10 118402630 118402984 + 1.5 NA Intergenic L1ME1|LINE|L1 45699 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 276.167-17 chr5 39431749 39431985 + 1.5 NA Intergenic L1ME3C|LINE|L1 -6634 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 186.5-31 chr8 67014558 67014803 + 1.5 NA intron (NM_001364910, intron 2 of 7) intron (NM_001364910, intron 2 of 7) 13871 NM_001348563 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 264.167-17 chr3 6758029 6758384 + 1.5 NA intron (NR_110125, intron 2 of 3) intron (NR_110125, intron 2 of 3) 47243 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 181.666-2 chr17 72529954 72530290 + 1.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 62682 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 204-5 chr1 244276418 244276651 + 1.5 NA Intergenic Intergenic -76101 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 444.167-3 chr5 7886431 7886918 + 1.5 NA exon (NM_001364442, exon 8 of 15) exon (NM_001364442, exon 8 of 15) 17526 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 177.333-24 chr3 58784063 58784193 + 1.5 NA intron (NM_001351532, intron 14 of 14) L1PA16|LINE|L1 -40343 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 184.5-25 chr2 192155155 192155351 + 1.5 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 39680 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 299.5-17 chr5 5917641 5917967 + 1.5 NA Intergenic Intergenic 419488 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 245-6 chr11 114297525 114297762 + 1.5 NA intron (NM_006169, intron 1 of 2) AluJr4|SINE|Alu 1830 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 251.5-22 chr5 178832660 178832982 + 1.5 NA Intergenic REP522|Satellite|telo -14386 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 197.333-32 chr5 146224745 146224893 + 1.5 NA intron (NM_018989, intron 3 of 20) FLAM_C|SINE|Alu 21214 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 247-9 chr14 19935163 19935330 + 1.5 NA promoter-TSS (NM_001004063) promoter-TSS (NM_001004063) -362 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 323.5-3 chr14 67941678 67942047 + 1.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 118270 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 394.333-2 chr11 46002093 46002441 + 1.5 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 79611 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 233.5-9 chr14 102096823 102097084 + 1.5 NA intron (NM_001017963, intron 2 of 11) intron (NM_001017963, intron 2 of 11) -9909 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 280.833-7 chr16 47018081 47018413 + 1.5 NA Intergenic Intergenic -44573 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 429.5 chr10 36629567 36629995 + 1.5 NA Intergenic Intergenic -496076 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 345.833-8 chr15 68651058 68651309 + 1.5 NA intron (NM_006091, intron 2 of 11) intron (NM_006091, intron 2 of 11) 9680 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 270.166-3 chr2 207258640 207258865 + 1.5 NA Intergenic Intergenic -1693 NR_146973 105373852 Hs.516721 NR_146973 LINC01802 - long intergenic non-protein coding RNA 1802 ncRNA 215-26 chr22 36948009 36948196 + 1.5 NA Intergenic L1MC1|LINE|L1 -17146 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 183-32 chr20 51985202 51985372 + 1.5 NA Intergenic Intergenic 120197 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 375.333-8 chr5 114205148 114205594 + 1.5 NA Intergenic Intergenic -156699 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 261-9 chr15 76523627 76523988 + 1.5 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -62840 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 270.833-13 chr4 86746058 86746450 + 1.5 NA intron (NM_080684, intron 17 of 44) intron (NM_080684, intron 17 of 44) 103130 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 306.501-2 chr10 103858852 103859155 + 1.5 NA Intergenic Intergenic -3597 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 293.5-4 chr1 114739453 114739875 + 1.5 NA intron (NM_001007553, intron 3 of 19) intron (NM_001007553, intron 3 of 19) 18320 NM_001130523 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 221-15 chr19 28287701 28288055 + 1.5 NA Intergenic L1PB4|LINE|L1 -318810 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 189-47 chr5 160391275 160391502 + 1.5 NA Intergenic Intergenic 8666 NM_022090 63920 Hs.529464 NM_022090 ENSG00000221886 ZBED8 Buster3|C5orf54 zinc finger BED-type containing 8 protein-coding 341.167-14 chr6 129673062 129673525 + 1.5 NA intron (NM_033515, intron 1 of 14) intron (NM_033515, intron 1 of 14) 36884 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 168.833-19 chr5 96993521 96993697 + 1.5 NA intron (NM_005575, intron 5 of 17) intron (NM_005575, intron 5 of 17) 35176 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 248.834-2 chr11 33829696 33829985 + 1.5 NA Intergenic Intergenic 40038 NM_001142316 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 221.167-16 chr2 179863346 179863536 + 1.5 NA Intergenic Intergenic -1829 NM_001352809 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 165.833-25 chr2 238073512 238073622 + 1.5 NA intron (NM_016510, intron 4 of 11) L1MB7|LINE|L1 12566 NM_016510 51540 Hs.731909 NM_016510 ENSG00000132330 SCLY SCL|hSCL selenocysteine lyase protein-coding 237.5-39 chr7 47988847 47989052 + 1.5 NA intron (NM_001030019, intron 8 of 9) intron (NM_001030019, intron 8 of 9) -9334 NM_001363683 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 254-23 chr7 30058223 30058418 + 1.5 NA intron (NM_001363473, intron 9 of 12) L1ME2|LINE|L1 13235 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 177-36 chr6 70901507 70901754 + 1.5 NA intron (NM_080742, intron 1 of 3) intron (NM_080742, intron 1 of 3) 55430 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 287.5-7 chr16 63425608 63426045 + 1.5 NA Intergenic L1MC|LINE|L1 -1389388 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 348.833-2 chr2 127411127 127411435 + 1.5 NA Intergenic Intergenic -7139 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 311-14 chr4 30900633 30900904 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 180399 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 185.833-30 chr9 127579008 127579217 + 1.5 NA promoter-TSS (NM_001035534) promoter-TSS (NM_001035534) -81 NM_001035534 64855 Hs.522401 NM_022833 ENSG00000136830 NIBAN2 C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6 niban apoptosis regulator 2 protein-coding 296.667-23 chr8 79433700 79433968 + 1.5 NA Intergenic L1MA5A|LINE|L1 101646 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 325.667-7 chr3 153927281 153927601 + 1.5 NA Intergenic Intergenic -164915 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 394.166-3 chr5 139422249 139422829 + 1.5 NA intron (NM_152686, intron 6 of 7) intron (NM_152686, intron 6 of 7) 16986 NM_152686 202052 Hs.483537 NM_152686 ENSG00000170464 DNAJC18 - DnaJ heat shock protein family (Hsp40) member C18 protein-coding 164.5-3 chr1 46247565 46247784 + 1.5 NA promoter-TSS (NM_001370766) promoter-TSS (NM_001370766) -14 NM_001370766 8438 Hs.642042 NM_003579 ENSG00000085999 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54 like protein-coding 165-54 chr8 135303600 135303793 + 1.5 NA Intergenic Intergenic 69565 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 213-24 chr2 110687397 110687620 + 1.5 NA Intergenic MER21C|LTR|ERVL -9401 NM_001278617 699 Hs.469649 NM_004336 ENSG00000169679 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 373.333-14 chr8 142186883 142187410 + 1.5 NA Intergenic Intergenic 10807 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 329.333-13 chr7 94532116 94532585 + 1.5 NA intron (NM_001363427, intron 6 of 17) MER44B|DNA|TcMar-Tigger 22541 NM_001363428 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 225.834-12 chr6 84243559 84243771 + 1.5 NA Intergenic Intergenic -16022 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 247.333-28 chr9 135209109 135209317 + 1.5 NA Intergenic MER67A|LTR|ERV1 27604 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 378.667-3 chr12 50285430 50285897 + 1.5 NA Intergenic MER63D|DNA|hAT-Blackjack -2143 NM_001113546 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 255.5-37 chr8 72299851 72300107 + 1.5 NA Intergenic Intergenic -48345 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 523-5 chr3 48635251 48635917 + 1.5 NA promoter-TSS (NM_134426) promoter-TSS (NM_134426) -123 NM_001281732 65010 Hs.631925 NM_022911 ENSG00000225697 SLC26A6 - solute carrier family 26 member 6 protein-coding 280.5 chr1 17992394 17992872 + 1.5 NA Intergenic Intergenic -73024 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 259-40 chr7 72164836 72165028 + 1.5 NA intron (NM_001363460, intron 2 of 5) AluJr4|SINE|Alu 172459 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 216-47 chr7 95876246 95876522 + 1.5 NA intron (NM_004411, intron 6 of 16) LTR81B|LTR|Gypsy 103878 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 342-14 chr6 2653688 2654103 + 1.5 NA Intergenic L1M4|LINE|L1 -19292 NR_131168 154386 Hs.680574 NM_152554 ENSG00000164385 LINC01600 C6orf195|bA145H9.2 long intergenic non-protein coding RNA 1600 ncRNA 201-20 chr2 46674940 46675141 + 1.5 NA Intergenic Intergenic -23920 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 335.5-8 chr5 148687193 148687725 + 1.5 NA Intergenic Intergenic -32932 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 398.5-7 chr3 127804808 127805136 + 1.5 NA intron (NM_001003794, intron 2 of 7) intron (NM_001003794, intron 2 of 7) 17910 NM_001256585 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 328.666-4 chr7 9091154 9091707 + 1.5 NA Intergenic L1PREC2|LINE|L1 -542840 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 179.834-9 chr8 83750843 83751056 + 1.5 NA Intergenic Intergenic 347191 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 336.833-2 chr14 21068388 21068935 + 1.5 NA intron (NM_001282211, intron 1 of 14) intron (NM_001282211, intron 1 of 14) -1643 NM_018071 55701 Hs.35125 NM_018071 ENSG00000165801 ARHGEF40 SOLO Rho guanine nucleotide exchange factor 40 protein-coding 228.667-24 chr20 7980361 7980523 + 1.5 NA 3' UTR (NM_021156, exon 8 of 8) 3' UTR (NM_021156, exon 8 of 8) 39319 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 402.667-6 chr12 32221727 32222061 + 1.5 NA intron (NR_148725, intron 2 of 9) intron (NR_148725, intron 2 of 9) 115047 NM_001354187 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 244.333-19 chr2 236162114 236162374 + 1.5 NA Intergenic Intergenic 6142 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 191-36 chr4 81288662 81288875 + 1.5 NA Intergenic Intergenic -73546 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 353.334-7 chr5 74849084 74849479 + 1.5 NA intron (NM_015566, intron 1 of 12) intron (NM_015566, intron 1 of 12) -16612 NR_134288 441086 Hs.653007 NR_134288 LOC441086 - uncharacterized LOC441086 ncRNA 518.833-2 chr16 83956675 83957186 + 1.5 NA intron (NM_182981, intron 1 of 5) intron (NM_182981, intron 1 of 5) 3690 NM_182981 29948 Hs.128055 NM_013370 ENSG00000140961 OSGIN1 BDGI|OKL38 oxidative stress induced growth inhibitor 1 protein-coding 344.667 chr1 206933513 206933912 + 1.5 NA intron (NM_002644, intron 6 of 10) intron (NM_002644, intron 6 of 10) -11771 NM_005449 9214 Hs.58831 NM_005449 ENSG00000162894 FCMR FAIM3|TOSO Fc fragment of IgM receptor protein-coding 200-35 chr5 143049157 143049380 + 1.5 NA intron (NR_146198, intron 14 of 22) intron (NR_146198, intron 14 of 22) -143232 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 556.501 chr1 7218091 7218665 + 1.5 NA intron (NM_001349608, intron 3 of 21) L1MC4|LINE|L1 171376 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 358.333-9 chr7 37250377 37250766 + 1.5 NA intron (NM_001206480, intron 6 of 21) AluY|SINE|Alu 103097 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 168-22 chr18 6865093 6865258 + 1.5 NA intron (NM_001010000, intron 4 of 16) intron (NM_001010000, intron 4 of 16) 30690 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 271.5-38 chr7 84316774 84317000 + 1.5 NA Intergenic Intergenic -122098 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 180.667-16 chr12 119632453 119632598 + 1.5 NA intron (NM_001136534, intron 2 of 2) intron (NM_001136534, intron 2 of 2) -35608 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 300-8 chr15 52183227 52183800 + 1.5 NA intron (NR_102751, intron 2 of 2) intron (NR_102751, intron 2 of 2) 3487 NR_102751 100129973 Hs.569494 NR_102751 CERNA1 - competing endogenous lncRNA 1 for miR-4707-5p and miR-4767 ncRNA 192-4 chr1 226067913 226068135 + 1.5 NA intron (NM_002107, intron 3 of 3) intron (NM_002107, intron 3 of 3) 5297 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 446.333-2 chr8 28933552 28934007 + 1.5 NA intron (NM_001324393, intron 2 of 11) L1M5|LINE|L1 42465 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 378.167-8 chr7 37793195 37793600 + 1.5 NA Intergenic SATR2|Satellite|Satellite -55200 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 292.833 chr1 52712342 52712892 + 1.5 NA Intergenic AluSg|SINE|Alu -13836 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 292.167-5 chr11 17966531 17966887 + 1.5 NA intron (NR_104040, intron 8 of 11) intron (NR_104040, intron 8 of 11) 46338 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 442 chr11 55850322 55850792 + 1.5 NA Intergenic MIR3|SINE|MIR 11805 NM_001005496 390144 Hs.554527 NM_001005496 ENSG00000205029 OR5D16 OR11-154 olfactory receptor family 5 subfamily D member 16 protein-coding 188.667-9 chr11 79425364 79425827 + 1.5 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) -3369 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 253.166 chr1 76617573 76617921 + 1.5 NA intron (NR_146056, intron 4 of 5) MLT1O|LTR|ERVL-MaLR 161520 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 251.333-14 chr17 69209890 69210168 + 1.5 NA intron (NM_080282, intron 10 of 39) intron (NM_080282, intron 10 of 39) 24983 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 256.833-15 chr7 26843051 26843247 + 1.5 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 14574 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 171-22 chr15 101650412 101650600 + 1.5 NA intron (NM_001307960, intron 1 of 4) intron (NM_001307960, intron 1 of 4) 1875 NM_078474 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 264-32 chr8 92186231 92186520 + 1.5 NA Intergenic Intergenic -82990 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 218.5-15 chr14 57261906 57262267 + 1.5 NA intron (NM_006544, intron 1 of 17) intron (NM_006544, intron 1 of 17) 6819 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 236-30 chr8 128176568 128176794 + 1.5 NA Intergenic Intergenic 26565 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 222.167-30 chr4 56706700 56706902 + 1.5 NA Intergenic AluSg|SINE|Alu -25095 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 183.667-54 chr8 3175197 3175344 + 1.5 NA intron (NM_033225, intron 37 of 69) intron (NM_033225, intron 37 of 69) -446819 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 315.333-11 chr2 72533867 72534125 + 1.5 NA intron (NR_135774, intron 8 of 19) MIRc|SINE|MIR 292037 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 321-13 chr3 95840068 95840552 + 1.5 NA Intergenic Intergenic -157117 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 172.5 chr1 10487273 10487410 + 1.5 NA intron (NM_004565, intron 1 of 8) L1ME2|LINE|L1 12391 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 449.333 chr11 31239995 31240835 + 1.5 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 129324 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 450.499 chr13 111954731 111955133 + 1.5 NA Intergenic L1MB3|LINE|L1 -17378 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 213.667-30 chr3 80793425 80793647 + 1.5 NA Intergenic L1PB4|LINE|L1 22832 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 310.5-5 chr13 62118666 62118987 + 1.5 NA Intergenic Intergenic -89278 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 225.5-23 chr5 176674419 176674665 + 1.5 NA Intergenic Intergenic 27058 NM_001006616 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 185.667-29 chr2 175033361 175033650 + 1.5 NA Intergenic L1PA17|LINE|L1 -28126 NR_038133 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 197-22 chr3 35386653 35386826 + 1.5 NA intron (NR_110817, intron 1 of 3) L1MEh|LINE|L1 7284 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 308.5-6 chr10 100010024 100010315 + 1.5 NA promoter-TSS (NM_015221) promoter-TSS (NM_015221) -222 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 770.833 chr2 75605840 75606871 + 1.5 NA Intergenic Intergenic -36636 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 200.833-15 chr15 68150910 68151164 + 1.5 NA intron (NM_016166, intron 6 of 13) intron (NM_016166, intron 6 of 13) 55073 NM_001286694 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 220.167-24 chr4 153634897 153635164 + 1.5 NA intron (NM_001131007, intron 33 of 34) intron (NM_001131007, intron 33 of 34) -5138 NR_134873 100419170 Hs.382102 NR_134873 ENSG00000250771 LOC100419170 - toll like receptor 2 pseudogene pseudo 196-26 chr2 224750542 224750805 + 1.5 NA Intergenic LTR47A|LTR|ERVL -165276 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 451-4 chr7 73522331 73522724 + 1.5 NA promoter-TSS (NM_032408) promoter-TSS (NM_032408) -234 NM_001370402 9031 Hs.743372 NM_023005 ENSG00000009954 BAZ1B WBSCR10|WBSCR9|WSTF bromodomain adjacent to zinc finger domain 1B protein-coding 390.333-9 chr5 179732062 179732573 + 1.5 NA promoter-TSS (NM_014757).2 promoter-TSS (NM_014757).2 -505 NM_014757 9794 Hs.631951 NM_014757 ENSG00000161021 MAML1 Mam-1|Mam1 mastermind like transcriptional coactivator 1 protein-coding 181.167-34 chr8 99165412 99165612 + 1.5 NA intron (NM_017890, intron 15 of 61) intron (NM_017890, intron 15 of 61) 152246 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 237-16 chr18 56718732 56718918 + 1.5 NA intron (NM_015285, intron 13 of 27) intron (NM_015285, intron 13 of 27) 67440 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 217.5-17 chr4 106252756 106252961 + 1.5 NA intron (NM_033115, intron 3 of 23) L1ME4b|LINE|L1 -62752 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 273.333-21 chr8 83757116 83757515 + 1.5 NA Intergenic Intergenic 353557 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 188.333-45 chrX 40909565 40909863 + 1.5 NA Intergenic Intergenic -76518 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 591.833-2 chr6 39229134 39229819 + 1.5 NA promoter-TSS (NM_003740) promoter-TSS (NM_003740) -1 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 263.667-9 chr15 27552719 27552984 + 1.5 NA Intergenic L1MB2|LINE|L1 -391532 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 655.5 chr7 92133348 92134377 + 1.5 NA promoter-TSS (NR_122109) promoter-TSS (NR_122109) 615 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 347-21 chr6 142698358 142698781 + 1.5 NA Intergenic Intergenic -60680 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 296-11 chr5 152505911 152506117 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -100735 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 212.167-8 chr16 69426549 69426965 + 1.5 NA intron (NM_030579, intron 1 of 4) intron (NM_030579, intron 1 of 4) 2162 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 236.334-12 chr3 97824291 97824492 + 1.5 NA intron (NM_153605, intron 1 of 21) intron (NM_153605, intron 1 of 21) 2380 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 332.833-3 chr10 4807839 4808279 + 1.5 NA Intergenic L1M5|LINE|L1 -18118 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 175.334-4 chr4 77483117 77483334 + 1.5 NA Intergenic L1P4|LINE|L1 -28528 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 211.333-3 chr1 114358217 114358372 + 1.5 NA Intergenic MER83A-int|LTR|ERV1 152909 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 218.333-8 chr15 59084855 59085252 + 1.5 NA intron (NM_001270529, intron 9 of 13) intron (NM_001270529, intron 9 of 13) -20093 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 539.834-3 chr5 149034939 149035515 + 1.5 NA intron (NM_024577, intron 8 of 16) intron (NM_024577, intron 8 of 16) 27182 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 319-5 chr2 63827416 63827764 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -13374 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 376.834 chr11 72387844 72388375 + 1.5 NA intron (NM_001258393, intron 2 of 14) intron (NM_001258393, intron 2 of 14) 46422 NM_001258393 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 461.666 chr20 34069552 34070231 + 1.5 NA intron (NM_007367, intron 2 of 8) intron (NM_007367, intron 2 of 8) 20772 NR_039911 100616434 NR_039911 ENSG00000264616 MIR4755 mir-4755 microRNA 4755 ncRNA 494.5-6 chr3 32078758 32079397 + 1.5 NA Intergenic LTR54|LTR|ERV1 -27434 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 235.167-28 chr6 34989640 34989801 + 1.5 NA intron (NM_015245, intron 9 of 23) intron (NM_015245, intron 9 of 23) 100465 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 494.666 chr20 36202921 36203423 + 1.5 NA intron (NM_001258330, intron 14 of 20) intron (NM_001258330, intron 14 of 20) -33245 NM_015511 25980 Hs.11314 NM_015511 ENSG00000131043 AAR2 C20orf4|CGI-23 AAR2 splicing factor protein-coding 320.667-15 chr6 116141467 116141816 + 1.5 NA intron (NM_152729, intron 6 of 11) intron (NM_152729, intron 6 of 11) -15509 NM_000493 1300 Hs.520339 NM_000493 ENSG00000123500 COL10A1 - collagen type X alpha 1 chain protein-coding 178.167-7 chr11 128117149 128117346 + 1.5 NA Intergenic L1MB8|LINE|L1 -91519 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 275.833-16 chr22 29865660 29865978 + 1.5 NA Intergenic L1MD2|LINE|L1 -17350 NM_153050 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 378.5-9 chr6 68442542 68442910 + 1.5 NA Intergenic Intergenic -112827 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 322.833-2 chr12 26872508 26872836 + 1.5 NA Intergenic Intergenic -39478 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 410.167-5 chr21 31171357 31171819 + 1.5 NA intron (NM_001353686, intron 15 of 27) intron (NM_001353686, intron 15 of 27) -10648 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 236.334-9 chr2 64114202 64114390 + 1.5 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 30124 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 269.833-2 chr1 225774211 225774481 + 1.5 NA Intergenic MER46C|DNA|TcMar-Tigger -3467 NM_001130440 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 269-12 chr18 74654865 74655094 + 1.5 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 24016 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 226-37 chr4 101229318 101229529 + 1.5 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 11449 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 372.667-6 chr2 5371694 5372107 + 1.5 NA Intergenic Intergenic 319218 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 164.667-9 chr10 64751946 64752317 + 1.5 NA Intergenic MER4D|LTR|ERV1 -73397 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 239.167-5 chr10 122374513 122374676 + 1.5 NA promoter-TSS (NM_001001974) promoter-TSS (NM_001001974) -114 NM_001330178 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 179.5-28 chr3 16342373 16342515 + 1.5 NA intron (NM_015150, intron 7 of 9) L1MB8|LINE|L1 77232 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 253.667-6 chr10 56174386 56174622 + 1.5 NA Intergenic L1MD2|LINE|L1 186755 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 299.167-2 chr1 61818932 61819147 + 1.5 NA intron (NM_001350145, intron 14 of 43) intron (NM_001350145, intron 14 of 43) -27036 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 348.334-3 chr14 64063082 64063349 + 1.5 NA intron (NM_015180, intron 50 of 114) AluSx1|SINE|Alu 31910 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 252.5-22 chr6 155801255 155801527 + 1.5 NA Intergenic L1ME2|LINE|L1 -145406 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 216.833-2 chr1 145998239 145998678 + 1.5 NA Intergenic Intergenic -1879 NM_006472 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 498.5 chr2 65576186 65576909 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -143948 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 476.833 chr1 11838627 11839104 + 1.5 NA intron (NM_001286, intron 22 of 22) intron (NM_001286, intron 22 of 22) -1454 NR_037806 100379251 Hs.710015 NR_037806 NPPA-AS1 NPPA-AS|NPPAAS NPPA antisense RNA 1 ncRNA 190.167-2 chr11 14645327 14645503 + 1.5 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 1611 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 321-24 chr7 87417239 87417633 + 1.5 NA exon (NM_018850, exon 21 of 27) exon (NM_018850, exon 21 of 27) 58244 NM_000443 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 263-19 chr9 69635421 69635612 + 1.5 NA intron (NM_001163, intron 1 of 12) L1MA3|LINE|L1 36855 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 423-2 chr10 97914470 97914946 + 1.5 NA intron (NM_001206528, intron 5 of 14) intron (NM_001206528, intron 5 of 14) -38811 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 204.334-11 chr8 137165669 137165920 + 1.5 NA Intergenic HERV16-int|LTR|ERVL 247794 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 273.333-13 chr4 48044325 48044588 + 1.5 NA Intergenic Intergenic 27684 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 259.5-32 chr9 101728131 101728604 + 1.5 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 10213 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 236.167-9 chr2 102049568 102049829 + 1.5 NA Intergenic Intergenic -20692 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 362-13 chr2 73164727 73165081 + 1.5 NA Intergenic MER112|DNA|hAT-Charlie -37670 NM_001134462 344022 Hs.694384 NM_001134462 ENSG00000214513 NOTO - notochord homeobox protein-coding 417.334-2 chr3 55434611 55435047 + 1.5 NA Intergenic Intergenic 46569 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 222.166-4 chr9 128084101 128084262 + 1.5 NA intron (NM_001006641, intron 1 of 9) MER4D1|LTR|ERV1 -7283 NM_001006642 114789 Hs.5476 NM_052901 ENSG00000148339 SLC25A25 MCSC|PCSCL|SCAMC-2 solute carrier family 25 member 25 protein-coding 289.167-17 chr8 119980106 119980387 + 1.5 NA intron (NM_022783, intron 4 of 8) MER33|DNA|hAT-Charlie 106524 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 301.834-8 chr2 35166976 35167275 + 1.5 NA Intergenic Intergenic -304280 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 254.833-4 chr11 47196483 47196826 + 1.5 NA Intergenic AluSx|SINE|Alu -10220 NM_016223 29763 Hs.334639 NM_016223 ENSG00000165912 PACSIN3 SDPIII protein kinase C and casein kinase substrate in neurons 3 protein-coding 379.667-4 chr16 77615676 77616106 + 1.5 NA Intergenic Intergenic -106601 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 311.667-3 chr12 116015302 116015710 + 1.5 NA intron (NM_015335, intron 7 of 30) intron (NM_015335, intron 7 of 30) 133148 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 353.833-6 chr11 83642345 83642807 + 1.5 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) 39849 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 349.167-2 chr12 11795766 11796016 + 1.5 NA intron (NM_001987, intron 2 of 7) MIR|SINE|MIR 146037 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 202.5-11 chr11 41980645 41980925 + 1.5 NA Intergenic L1MC4a|LINE|L1 104673 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 232.5-5 chr10 59937602 59937855 + 1.5 NA Intergenic L1MC5a|LINE|L1 23185 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 314.167-8 chr17 39206924 39207303 + 1.5 NA Intergenic Intergenic 6790 NM_001330200 6143 Hs.381061 NM_000981 ENSG00000108298 RPL19 L19 ribosomal protein L19 protein-coding 362.833-9 chr8 72137994 72138238 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -62532 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 169.333-13 chr10 79445737 79445902 + 1.5 NA promoter-TSS (NM_153367) promoter-TSS (NM_153367) -195 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 190.5-5 chr10 17064783 17064989 + 1.5 NA intron (NM_001081, intron 22 of 66) intron (NM_001081, intron 22 of 66) 64931 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 420.167-7 chr7 42911790 42912508 + 1.5 NA promoter-TSS (NM_001363436) promoter-TSS (NM_001363436) -59 NM_001099858 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 399.167-6 chr3 152471816 152472368 + 1.5 NA Intergenic Intergenic -131102 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 441.833-7 chr5 51035536 51036223 + 1.5 NA Intergenic Intergenic -65692 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 199.667-41 chr6 94448516 94448857 + 1.5 NA Intergenic L1MD2|LINE|L1 730383 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 356.167-8 chr2 125494519 125494897 + 1.5 NA Intergenic Intergenic 623277 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 202-35 chr7 72206660 72206841 + 1.5 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 130641 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 343.667-3 chr1 196468701 196469141 + 1.5 NA intron (NM_001287820, intron 6 of 26) intron (NM_001287820, intron 6 of 26) 113560 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 485-7 chr6 40953895 40954814 + 1.5 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 68926 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 166.5-6 chr11 66056491 66056631 + 1.5 NA intron (NM_006842, intron 5 of 21) intron (NM_006842, intron 5 of 21) 3417 NR_145738 109616986 NR_145738 SNORD13F - small nucleolar RNA, C/D box 13F snoRNA 178.833-44 chrX 113928951 113929228 + 1.5 NA intron (NR_131204, intron 1 of 2) L1MA4|LINE|L1 9129 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 306.833-4 chr6 75285478 75285772 + 1.5 NA promoter-TSS (NM_018247) promoter-TSS (NM_018247) 611 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 243.667-26 chr2 180296022 180296371 + 1.5 NA Intergenic AluJb|SINE|Alu -288899 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 354.501-3 chr6 167898854 167899206 + 1.5 NA intron (NM_001207008, intron 10 of 31) intron (NM_001207008, intron 10 of 31) 71395 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4|l-afadin afadin, adherens junction formation factor protein-coding 332.5-4 chr12 41359946 41360169 + 1.5 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -77682 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 236.833-23 chr9 85467675 85467887 + 1.5 NA Intergenic L1M5|LINE|L1 274248 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 350.666-5 chr9 69543025 69543600 + 1.5 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 129059 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 332.667-13 chr5 148827656 148828026 + 1.5 NA exon (NM_000024, exon 1 of 1) exon (NM_000024, exon 1 of 1) 1248 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 351.5-13 chr7 45490038 45490470 + 1.5 NA Intergenic L1PA10|LINE|L1 -83886 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 314.833-9 chr3 71681101 71681568 + 1.5 NA 3' UTR (NM_001134649, exon 8 of 8) 3' UTR (NM_001134649, exon 8 of 8) 44068 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 326-10 chr3 165371139 165371590 + 1.5 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 164404 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 323.499 chr5 163993741 163994166 + 1.5 NA Intergenic AluJb|SINE|Alu 473449 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 196.5-30 chr3 195294843 195295077 + 1.5 NA intron (NM_012287, intron 17 of 22) intron (NM_012287, intron 17 of 22) -23801 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 247.5-24 chr2 136545003 136545414 + 1.5 NA Intergenic AluSx1|SINE|Alu -220337 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 304-24 chr4 108402209 108402479 + 1.5 NA Intergenic Intergenic -154889 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 336-16 chr5 60470738 60471049 + 1.5 NA intron (NM_001364599, intron 1 of 16) Tigger1|DNA|TcMar-Tigger -16820 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 255.167-8 chr10 55269023 55269425 + 1.5 NA intron (NM_001354404, intron 2 of 34) L1PA16|LINE|L1 -329818 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 258.333-13 chr4 34913335 34913716 + 1.5 NA Intergenic L1PB4|LINE|L1 -643778 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 283.167-13 chr3 122833785 122834213 + 1.5 NA intron (NM_032839, intron 4 of 8) intron (NM_032839, intron 4 of 8) 38930 NM_032839 84925 Hs.477346 NM_032839 ENSG00000138463 SLC49A4 DIRC2|RCC4 solute carrier family 49 member 4 protein-coding 354.833-3 chr22 35372051 35372448 + 1.5 NA Intergenic Intergenic -8847 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 288.833-9 chr2 75896530 75896925 + 1.5 NA Intergenic Intergenic -185812 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 285-14 chr20 58858595 58858940 + 1.5 NA intron (NM_001309883, intron 3 of 5) intron (NM_001309883, intron 3 of 5) 5786 NM_001077490 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 180.833-25 chr8 131128092 131128277 + 1.5 NA Intergenic Intergenic -87275 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 276-7 chr12 60459001 60459331 + 1.5 NA Intergenic L1MB7|LINE|L1 769796 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 192.167-20 chr19 48248314 48248532 + 1.5 NA intron (NM_001351782, intron 3 of 14) L1ME3G|LINE|L1 1210 NR_033678 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 205.5-37 chr7 110888103 110888344 + 1.5 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -202783 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 181-28 chr22 26585337 26585552 + 1.5 NA intron (NM_001362923, intron 1 of 7) intron (NM_001362923, intron 1 of 7) 4688 NM_001362923 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 249.5-3 chr11 20821286 20821723 + 1.5 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 151918 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 285.167-10 chr2 123527722 123528137 + 1.5 NA Intergenic L1MEc|LINE|L1 -454448 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 339.667-2 chr1 171226225 171226673 + 1.5 NA Intergenic Intergenic -22022 NM_001282694 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 255.5-16 chr2 40747872 40748150 + 1.5 NA Intergenic Intergenic -235576 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 389-4 chr14 72016531 72016896 + 1.5 NA intron (NM_001370288, intron 2 of 16) L1ME3Cz|LINE|L1 83186 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 323.167-9 chr8 63165808 63166260 + 1.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR 2408 NR_102684 101410533 Hs.163027 NR_102684 ENSG00000270673 YTHDF3-AS1 - YTHDF3 antisense RNA 1 (head to head) ncRNA 322.667-5 chr11 112961000 112961247 + 1.5 NA promoter-TSS (NM_001076682) promoter-TSS (NM_001076682) -297 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 163.833-34 chr6 68481310 68481644 + 1.5 NA Intergenic L1MA2|LINE|L1 -151578 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 248.167-4 chr10 48358384 48358666 + 1.5 NA intron (NM_001323302, intron 3 of 13) L1MB4|LINE|L1 -43087 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 222.667-13 chr14 20741036 20741320 + 1.5 NA Intergenic PABL_B-int|LTR|ERV1 -4709 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 348.5-17 chr5 144016077 144016638 + 1.5 NA Intergenic Intergenic 154302 NM_001024947 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 348.167-5 chr18 5458117 5458432 + 1.5 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 82282 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 315.667 chr1 224333135 224333748 + 1.5 NA Intergenic Intergenic -3252 NM_206840 4931 Hs.497867 NM_002533 ENSG00000143748 NVL NVL2 nuclear VCP like protein-coding 253.5-4 chr10 68095651 68096025 + 1.5 NA Intergenic L1MB3|LINE|L1 -10169 NR_045662 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 216-34 chr3 138922963 138923290 + 1.5 NA Intergenic AluJo|SINE|Alu 20894 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 253.667-23 chr2 61957810 61958148 + 1.5 NA intron (NM_152516, intron 1 of 2) MIRb|SINE|MIR 52337 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 198.667-21 chr19 48714352 48714505 + 1.5 NA exon (NM_182574, exon 5 of 8) exon (NM_182574, exon 5 of 8) 2529 NM_182574 284358 Hs.191815 NM_182574 ENSG00000176909 MAMSTR MASTR MEF2 activating motif and SAP domain containing transcriptional regulator protein-coding 406.501-2 chr3 79073069 79073381 + 1.5 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -53766 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 268-8 chr10 89772621 89772993 + 1.5 NA exon (NM_001284259, exon 32 of 33) exon (NM_001284259, exon 32 of 33) -56686 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 248.333-32 chr7 90899535 90900082 + 1.5 NA intron (NM_012395, intron 6 of 13) intron (NM_012395, intron 6 of 13) 189992 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 325.167-4 chr16 69930423 69931063 + 1.5 NA intron (NM_199424, intron 3 of 13) AluJo|SINE|Alu -2338 NR_029681 406932 NR_029681 ENSG00000208017 MIR140 MIRN140|miRNA140|mir-140 microRNA 140 ncRNA 422.333-4 chr20 51456490 51456927 + 1.5 NA intron (NM_012340, intron 5 of 10) intron (NM_012340, intron 5 of 10) -3731 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 187.333-43 chr7 112019223 112019428 + 1.5 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 187074 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 466.5-7 chr7 88835290 88835744 + 1.5 NA intron (NM_181646, intron 1 of 3) L1MC5|LINE|L1 -39780 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 226.167-16 chr22 45386944 45387118 + 1.5 NA exon (NM_001291501, exon 11 of 23) exon (NM_001291501, exon 11 of 23) 26568 NM_148674 27127 Hs.334176 NM_148674 ENSG00000077935 SMC1B SMC1BETA|SMC1L2 structural maintenance of chromosomes 1B protein-coding 283.5-8 chr18 66185482 66185822 + 1.5 NA Intergenic Intergenic 418438 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 399.167 chr11 99236761 99237146 + 1.5 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 216004 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 244-24 chr4 82181641 82181938 + 1.5 NA Intergenic L1ME4a|LINE|L1 192202 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 308.333-2 chr10 96335125 96335541 + 1.5 NA intron (NM_001017520, intron 9 of 10) intron (NM_001017520, intron 9 of 10) 21826 NM_001284323 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 319.5-8 chr2 19539111 19539487 + 1.5 NA Intergenic Intergenic -180676 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 295.833 chr14 56351926 56352436 + 1.5 NA Intergenic LTR33B|LTR|ERVL -162150 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 319-18 chr8 99283206 99283483 + 1.5 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 253386 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 429-10 chr6 149082172 149082879 + 1.5 NA Intergenic Intergenic -49864 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 372.833-2 chr12 70275028 70275438 + 1.5 NA intron (NM_001199303, intron 1 of 15) L1MEc|LINE|L1 31519 NR_037615 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 746-2 chr15 44501807 44502375 + 1.5 NA intron (NM_016396, intron 8 of 12) intron (NM_016396, intron 8 of 12) 34809 NR_034171 645212 Hs.594287 NR_034170 EIF3J-DT EIF3J-AS1 EIF3J divergent transcript ncRNA 402.167-11 chr5 58523966 58524458 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie 5897 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 593-3 chr2 218396086 218396804 + 1.5 NA 3' UTR (NM_000578, exon 15 of 15) 3' UTR (NM_000578, exon 15 of 15) -1788 NM_001206878 58190 Hs.444468 NM_021198 ENSG00000144579 CTDSP1 NIF3|NLI-IF|NLIIF|SCP1 CTD small phosphatase 1 protein-coding 454.334 chr10 59249444 59249845 + 1.5 NA intron (NM_198215, intron 13 of 13) intron (NM_198215, intron 13 of 13) 72177 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 333.833 chr1 118698771 118699201 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 289357 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 651.167 chr2 203061618 203062135 + 1.5 NA intron (NM_001114132, intron 6 of 54) intron (NM_001114132, intron 6 of 54) 46997 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 179.667-23 chr2 180781873 180782019 + 1.5 NA intron (NR_104324, intron 3 of 4) intron (NR_104324, intron 3 of 4) 89842 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 314.667-4 chr12 47165280 47165616 + 1.5 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) -22364 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 472.5 chr1 204782078 204782422 + 1.5 NA Intergenic FLAM_A|SINE|Alu -46402 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 237-17 chr2 18751634 18751838 + 1.5 NA Intergenic Intergenic -162156 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 791.334 chr1 247486710 247487544 + 1.5 NA Intergenic Intergenic -3941 NM_001004698 441932 Hs.591526 NM_001004698 OR2W5 OR2W5P|OST722 olfactory receptor family 2 subfamily W member 5 (gene/pseudogene) protein-coding 248.5-36 chr7 27435449 27435931 + 1.5 NA Intergenic Intergenic -180284 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 191.167-16 chr2 177810131 177810302 + 1.5 NA intron (NM_001077197, intron 10 of 20) intron (NM_001077197, intron 10 of 20) 78540 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 353.333-10 chr2 175843886 175844328 + 1.5 NA Intergenic Intergenic 158160 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 402.333-5 chr7 92303075 92303514 + 1.5 NA intron (NM_019004, intron 2 of 19) Tigger4a|DNA|TcMar-Tigger -57194 NM_001350681 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 487.5-10 chr22 19881321 19881916 + 1.5 NA intron (NR_147957, intron 11 of 16) intron (NR_147957, intron 11 of 16) -26744 NM_053004 54584 Hs.105642 NM_053004 ENSG00000185838 GNB1L DGCRK3|FKSG1|GY2|WDR14|WDVCF G protein subunit beta 1 like protein-coding 352.333-9 chr5 38839391 38839704 + 1.5 NA intron (NR_109951, intron 1 of 3) L1MEf|LINE|L1 6282 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 314-22 chr9 124839604 124839983 + 1.5 NA Intergenic Intergenic -13624 NM_001276374 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 217.667-29 chr4 20695059 20695261 + 1.5 NA Intergenic L1MA9|LINE|L1 -1122 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 284.5-20 chr6 45256352 45256626 + 1.5 NA intron (NM_001350325, intron 2 of 10) MLT1A0|LTR|ERVL-MaLR -58719 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 280.166-2 chr13 46832738 46833016 + 1.5 NA 3' UTR (NM_000621, exon 4 of 4) 3' UTR (NM_000621, exon 4 of 4) -19263 NR_046612 100874082 Hs.569281 NR_046612 ENSG00000224517 HTR2A-AS1 - HTR2A antisense RNA 1 ncRNA 264-16 chr14 75389833 75390047 + 1.5 NA Intergenic L1MC3|LINE|L1 -37784 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 232-18 chr18 1846885 1847091 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity -487359 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 240.5 chr1 156752473 156752764 + 1.5 NA promoter-TSS (NM_001126051) promoter-TSS (NM_001126051) -170 NM_001126050 3068 Hs.743948 NM_004494 ENSG00000143321 HDGF HMG1L2 heparin binding growth factor protein-coding 406.333-9 chr8 71269837 71270398 + 1.5 NA intron (NM_001370336, intron 11 of 17) intron (NM_001370336, intron 11 of 17) 86589 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 211.667-9 chr14 50013359 50013528 + 1.5 NA intron (NR_131171, intron 6 of 8) intron (NR_131171, intron 6 of 8) -5923 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 398.167-3 chr20 53435864 53436207 + 1.5 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -116735 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 172-48 chr7 82726179 82726382 + 1.5 NA Intergenic L2a|LINE|L2 -282324 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 228-27 chr20 49299575 49299872 + 1.5 NA Intergenic AluSq|SINE|Alu 19040 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 170.167-44 chr9 87667264 87667478 + 1.5 NA intron (NM_004938, intron 18 of 25) MER20|DNA|hAT-Charlie -58748 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 314.167-12 chr7 85800273 85800637 + 1.5 NA Intergenic Intergenic 379333 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 224.333-33 chr7 4826265 4826548 + 1.5 NA intron (NM_018059, intron 5 of 14) intron (NM_018059, intron 5 of 14) 11044 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 388-8 chr3 72811532 72812301 + 1.5 NA intron (NM_018130, intron 9 of 10) MARNA|DNA|TcMar-Mariner 36529 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 230.334 chr11 64786961 64787204 + 1.5 NA 3' UTR (NM_004579, exon 32 of 32) 3' UTR (NM_004579, exon 32 of 32) -8238 NM_201997 7536 Hs.502829 NM_004630 ENSG00000168066 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 270-20 chr17 63816812 63817114 + 1.5 NA exon (NM_007372, exon 18 of 19) exon (NM_007372, exon 18 of 19) -10468 NM_002805 5705 Hs.79387 NM_002805 ENSG00000087191 PSMC5 S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG proteasome 26S subunit, ATPase 5 protein-coding 194.667-46 chr5 74395007 74395406 + 1.5 NA intron (NR_126354, intron 2 of 2) LTR86B1|LTR|ERVL 72720 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 207.5-20 chr2 12072676 12072843 + 1.5 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 65643 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 171.5-4 chr1 239448253 239448381 + 1.5 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 61749 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 214.167-6 chr14 52442519 52442730 + 1.5 NA intron (NM_001160047, intron 18 of 20) intron (NM_001160047, intron 18 of 20) 109881 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 345-17 chr4 72567376 72567888 + 1.5 NA intron (NM_014243, intron 1 of 21) intron (NM_014243, intron 1 of 21) 1589 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 173.5-54 chr9 31882522 31882726 + 1.5 NA Intergenic Intergenic -501134 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 265.5-24 chr4 108387602 108387793 + 1.5 NA Intergenic L1MD1|LINE|L1 -169536 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 230.167-18 chr8 59044843 59045123 + 1.5 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 74164 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 237.5-43 chr9 73519247 73519518 + 1.5 NA Intergenic Intergenic 367517 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 169.667-45 chr5 2999294 2999459 + 1.5 NA Intergenic Intergenic 81522 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 214.667-36 chr5 127029502 127029925 + 1.5 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 845 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 222.5-4 chr1 165290050 165290253 + 1.5 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 66090 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 258.667-31 chr9 132270564 132270788 + 1.5 NA intron (NM_001351527, intron 24 of 25) intron (NM_001351527, intron 24 of 25) 84180 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 291.5-23 chr3 37359239 37359474 + 1.5 NA intron (NM_001172713, intron 22 of 22) intron (NM_001172713, intron 22 of 22) -26913 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 265.5-15 chr2 50318627 50318917 + 1.5 NA intron (NM_001330093, intron 17 of 22) L1ME3D|LINE|L1 28982 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 284.167-10 chr2 132992768 132993113 + 1.5 NA intron (NM_207481, intron 7 of 17) L3b|LINE|CR1 77383 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 227-26 chr6 38909281 38909473 + 1.5 NA intron (NM_001371, intron 63 of 91) L3|LINE|CR1 43730 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 218-3 chr1 237202397 237202616 + 1.5 NA intron (NM_001035, intron 1 of 104) AluSz6|SINE|Alu 160322 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 287.667-27 chr9 136226333 136226626 + 1.5 NA intron (NM_181701, intron 2 of 11) intron (NM_181701, intron 2 of 11) 19362 NM_181701 169714 Hs.144073 NM_181701 ENSG00000165661 QSOX2 QSCN6L1|SOXN quiescin sulfhydryl oxidase 2 protein-coding 293.167-5 chr14 69652024 69652325 + 1.5 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 40578 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 378.833 chr1 208752627 208752948 + 1.5 NA Intergenic MamRep564|Unknown|Unknown 24099 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 364.833-6 chr8 117312949 117313290 + 1.5 NA Intergenic Intergenic 178124 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 325.667-5 chr3 108986891 108987230 + 1.5 NA intron (NM_014429, intron 21 of 27) intron (NM_014429, intron 21 of 27) -33181 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 241.667-24 chr5 10504533 10504894 + 1.5 NA TTS (NR_134290) TTS (NR_134290) -1985 NR_104606 101929412 Hs.508287 NR_104606 ENSG00000249396 LINC02212 - long intergenic non-protein coding RNA 2212 ncRNA 709.833 chr17 49179828 49180847 + 1.5 NA Intergenic Intergenic 29044 NM_031498 2793 Hs.181781 NM_031498 ENSG00000167083 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 G protein subunit gamma transducin 2 protein-coding 330-14 chr4 56120626 56121032 + 1.5 NA Intergenic Intergenic -49366 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 254.167-21 chr3 147191491 147191756 + 1.5 NA Intergenic L1MB2|LINE|L1 200807 NR_033119 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 305.333-2 chr1 152653784 152654189 + 1.5 NA Intergenic Intergenic -1491 NR_145430 388699 Hs.516420 NR_145430 LINC00302 C1orf46|NCRNA00302|xp33 long intergenic non-protein coding RNA 302 ncRNA 201.833-4 chr11 10886967 10887157 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 28845 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 322.334-6 chr2 174171174 174171632 + 1.5 NA intron (NM_001011708, intron 3 of 9) L1ME1|LINE|L1 77129 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 226.333-21 chr5 89119944 89120197 + 1.5 NA intron (NR_136221, intron 4 of 6) intron (NR_136221, intron 4 of 6) -215965 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 324.667-25 chrX 66346624 66346923 + 1.5 NA Intergenic L1MB3|LINE|L1 179023 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 387.166-3 chr5 98768324 98768740 + 1.5 NA promoter-TSS (NM_001366509) promoter-TSS (NM_001366509) -100 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 443.666-3 chr6 27019457 27020161 + 1.5 NA non-coding (NR_026776, exon 1 of 1) non-coding (NR_026776, exon 1 of 1) 497 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 170.5-25 chr2 133839469 133839656 + 1.5 NA Intergenic AluSx1|SINE|Alu -271099 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 542-4 chr5 28546900 28547317 + 1.5 NA Intergenic Intergenic -259443 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 202.5-39 chr3 66937732 66937903 + 1.5 NA Intergenic L2a|LINE|L2 -60490 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 237.167-7 chr14 82227117 82227443 + 1.5 NA Intergenic L2|LINE|L2 -415352 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 242.5-28 chr2 226832625 226832896 + 1.5 NA intron (NM_001349069, intron 3 of 8) AluSq2|SINE|Alu -3294 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 214.167-7 chr14 54165497 54165785 + 1.5 NA Intergenic Intergenic -208750 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 509.333 chr5 45692642 45693601 + 1.5 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 3259 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 215.833-26 chr8 77352233 77352455 + 1.5 NA Intergenic Intergenic -98353 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 291.667-6 chr18 77256920 77257155 + 1.5 NA intron (NM_001480, intron 2 of 2) intron (NM_001480, intron 2 of 2) 7189 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 288-13 chr15 91447425 91447725 + 1.5 NA Intergenic L1MEd|LINE|L1 -15764 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 243-12 chr2 216905587 216905864 + 1.5 NA Intergenic Intergenic 34953 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 273.167-15 chr7 144638058 144638303 + 1.5 NA intron (NM_001350889, intron 2 of 5) intron (NM_001350889, intron 2 of 5) 100718 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 378-22 chr8 122690569 122690970 + 1.5 NA intron (NR_126348, intron 2 of 3) L2c|LINE|L2 3337 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 684.667 chr4 147160295 147161704 + 1.5 NA Intergenic Intergenic 183718 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 272.333-11 chr4 173229947 173230317 + 1.5 NA intron (NM_017423, intron 1 of 11) intron (NM_017423, intron 1 of 11) -38028 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 385.667-7 chr2 96305170 96305744 + 1.5 NA promoter-TSS (NM_014014) promoter-TSS (NM_014014) 89 NM_014014 23020 Hs.246112 NM_014014 ENSG00000144028 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein U5 subunit 200 protein-coding 248-34 chr6 92022437 92022720 + 1.5 NA Intergenic Intergenic -332150 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 290.5-3 chr10 47152762 47153300 + 1.5 NA Intergenic Intergenic -147166 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 304.667-15 chr5 80957191 80957498 + 1.5 NA intron (NR_105015, intron 1 of 3) intron (NR_105015, intron 1 of 3) -3019 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 420.167-9 chr8 23019227 23019697 + 1.5 NA TTS (NM_003842) TTS (NM_003842) 19883 NM_015178 23221 Hs.372688 NM_015178 ENSG00000008853 RHOBTB2 DBC2|EIEE64 Rho related BTB domain containing 2 protein-coding 207.5-27 chr4 64176778 64176987 + 1.5 NA Intergenic Intergenic 232568 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 307.501-3 chr2 210619300 210619601 + 1.5 NA non-coding (NR_002763, exon 1 of 1) non-coding (NR_002763, exon 1 of 1) 1879 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 208.833-33 chr8 132608249 132608592 + 1.5 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -46941 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 324.334-4 chr4 139512364 139512664 + 1.5 NA intron (NM_030648, intron 7 of 7) intron (NM_030648, intron 7 of 7) 44255 NM_030648 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing 7, histone lysine methyltransferase protein-coding 351.5 chr1 61534843 61535187 + 1.5 NA Intergenic Intergenic -119227 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 223.5-9 chr12 53597372 53597760 + 1.5 NA intron (NR_073163, intron 2 of 12) AluY|SINE|Alu 28424 NM_001366556 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 408.667-6 chrX 119067201 119067669 + 1.5 NA Intergenic Intergenic 83144 NM_020721 57481 Hs.97594 NM_020721 ENSG00000250423 KIAA1210 - KIAA1210 protein-coding 274-33 chr8 81782139 81782324 + 1.5 NA Intergenic Intergenic 49783 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 266.167-6 chr8 22367868 22368362 + 1.5 NA intron (NM_001135153, intron 1 of 8) intron (NM_001135153, intron 1 of 8) 577 NM_001135153 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 204-17 chr15 98645784 98645932 + 1.5 NA TTS (NR_126453) TTS (NR_126453) -2681 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 165.167-16 chr15 97178207 97178373 + 1.5 NA Intergenic Intergenic 343521 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 224.667-35 chr4 168154072 168154575 + 1.5 NA intron (NM_007193, intron 3 of 11) intron (NM_007193, intron 3 of 11) 61786 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 182-7 chr14 69240503 69240684 + 1.5 NA intron (NM_001193360, intron 9 of 9) intron (NM_001193360, intron 9 of 9) -19565 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 246.667-4 chr10 120994044 120994307 + 1.5 NA Intergenic MER61-int|LTR|ERV1 142813 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 407.333-5 chr5 44044715 44045090 + 1.5 NA Intergenic L1PA11|LINE|L1 -343830 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 289-14 chr2 233065140 233065473 + 1.5 NA intron (NM_001017915, intron 1 of 26).2 intron (NM_001017915, intron 1 of 26).2 4964 NM_005541 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 621.501-2 chr9 115013815 115014604 + 1.5 NA Intergenic Intergenic -83614 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 458-7 chr3 5435651 5436051 + 1.5 NA Intergenic AluJr|SINE|Alu -185596 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 356-16 chr5 123577823 123578154 + 1.5 NA intron (NM_001044723, intron 5 of 12) L1MC4a|LINE|L1 32571 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 260.5-18 chr21 44662625 44663000 + 1.5 NA intron (NM_144991, intron 1 of 11) L1MCc|LINE|L1 4115 NM_181684 353323 Hs.567902 NM_181684 ENSG00000221864 KRTAP12-2 KAP12.2|KRTAP12.2 keratin associated protein 12-2 protein-coding 399.833-7 chr8 124372398 124372994 + 1.5 NA promoter-TSS (NM_194291) promoter-TSS (NM_194291) 3 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 242.167-25 chr5 150097928 150098104 + 1.5 NA intron (NM_005211, intron 1 of 21) L1ME1|LINE|L1 -5392 NM_001349736 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 491.667 chr1 197335643 197336160 + 1.5 NA intron (NM_001193640, intron 2 of 9) intron (NM_001193640, intron 2 of 9) 67649 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 399.167-7 chr5 141186667 141187020 + 1.5 NA promoter-TSS (NM_019119) promoter-TSS (NM_019119) -318 NM_019119 56127 Hs.662726 NM_019119 ENSG00000177839 PCDHB9 PCDH-BETA9|PCDH3H protocadherin beta 9 protein-coding 303.5-8 chr3 107429821 107430040 + 1.5 NA promoter-TSS (NR_110039) promoter-TSS (NR_110039) -1000 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 184.833-13 chr15 65790585 65790759 + 1.5 NA intron (NM_005848, intron 1 of 31) intron (NM_005848, intron 1 of 31) 1621 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 254.333-16 chr17 61251652 61252069 + 1.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 115844 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 281.5-19 chr5 62045231 62045559 + 1.5 NA Intergenic LTR8|LTR|ERV1 -260767 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 330-22 chr8 47960260 47960488 + 1.5 NA promoter-TSS (NM_005914) promoter-TSS (NM_005914) -191 NM_006904 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 443.833-6 chr6 50061833 50062462 + 1.5 NA Intergenic Intergenic -12218 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 370-6 chr18 741608 742040 + 1.5 NA intron (NM_005433, intron 8 of 11) intron (NM_005433, intron 8 of 11) -29160 NR_148707 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 223.5-23 chr6 138970794 138970980 + 1.5 NA intron (NM_031922, intron 1 of 19) L2|LINE|L2 17374 NM_001128617 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 468-4 chr18 74105830 74106213 + 1.5 NA intron (NM_001142958, intron 8 of 9) intron (NM_001142958, intron 8 of 9) 41813 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 302.667-15 chr9 92716639 92716870 + 1.5 NA intron (NM_001003800, intron 6 of 6) intron (NM_001003800, intron 6 of 6) -46623 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 244.5-17 chr2 84736935 84737131 + 1.5 NA intron (NM_001370, intron 62 of 76) L1PA17|LINE|L1 144051 NM_001277053 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 310.5-4 chr11 74195794 74196117 + 1.5 NA intron (NM_001271593, intron 1 of 13) HAL1|LINE|L1 24666 NM_016147 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 261.5-30 chr5 14030533 14030971 + 1.5 NA Intergenic MIR|SINE|MIR -86272 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 260.5-3 chr10 133124970 133125150 + 1.5 NA intron (NM_001083909, intron 5 of 6) L1MEf|LINE|L1 22814 NM_001291085 84435 Hs.435183 NM_032422 ENSG00000197177 ADGRA1 GPR123 adhesion G protein-coupled receptor A1 protein-coding 261.833-4 chr12 39147082 39147379 + 1.5 NA Intergenic L1MA2|LINE|L1 -241639 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 180.333-13 chr12 42414600 42414817 + 1.5 NA intron (NM_016488, intron 9 of 12) L1PB3|LINE|L1 68907 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 282.667-14 chr17 42436662 42437028 + 1.5 NA Intergenic Intergenic -13589 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 CAVIN1 CAVIN|CGL4|FKSG13|PTRF|cavin-1 caveolae associated protein 1 protein-coding 207-21 chr3 53956270 53956516 + 1.5 NA Intergenic Intergenic -64534 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 267.5-22 chr2 35786766 35787115 + 1.5 NA Intergenic Intergenic 315535 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 330.333-8 chr5 45147264 45147652 + 1.5 NA Intergenic L1MC3|LINE|L1 338511 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 380.667-8 chr7 54455767 54456112 + 1.5 NA Intergenic L1M7|LINE|L1 -86386 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 296.667-5 chr13 94656675 94656982 + 1.5 NA Intergenic Tigger4|DNA|TcMar-Tigger 51658 NR_120417 101927248 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 484.667 chr1 107141441 107141948 + 1.5 NA intron (NM_001330665, intron 1 of 6) CpG 655 NM_001330665 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 242.166-6 chr3 179915884 179916225 + 1.5 NA intron (NR_110061, intron 3 of 3) intron (NR_110061, intron 3 of 3) 16517 NR_110061 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 231.5-12 chr14 51343280 51343571 + 1.5 NA intron (NR_038358, intron 1 of 4) AluSz|SINE|Alu 10032 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 483.667 chr12 73953749 73954227 + 1.5 NA Intergenic L2a|LINE|L2 338643 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 276.833-12 chr7 14802490 14802798 + 1.5 NA intron (NM_001350717, intron 2 of 24) L1ME3Cz|LINE|L1 38806 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 539.5 chr14 66600220 66600964 + 1.5 NA intron (NM_001024218, intron 1 of 21) Tigger17a|DNA|TcMar-Tigger 93185 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 275.5-22 chr3 188370825 188371133 + 1.5 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 145574 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 416-4 chr20 52968628 52968990 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -3549 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 192.5-51 chr8 119357049 119357263 + 1.5 NA Intergenic L3|LINE|CR1 31985 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 378.5-10 chr8 90152907 90153433 + 1.5 NA Intergenic AluJr|SINE|Alu -68318 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 360.834-7 chr2 169835510 169835900 + 1.5 NA intron (NM_172070, intron 1 of 38) AluSx|SINE|Alu 8197 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 278-19 chr20 16128244 16128524 + 1.5 NA Intergenic Intergenic -142502 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 229-25 chr5 56804434 56804693 + 1.5 NA Intergenic Intergenic -10986 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 187.667-13 chr12 52649532 52649849 + 1.5 NA intron (NM_000423, intron 3 of 8) intron (NM_000423, intron 3 of 8) 2521 NM_000423 3849 Hs.707 NM_000423 ENSG00000172867 KRT2 CK-2e|K2e|KRT2A|KRT2E|KRTE keratin 2 protein-coding 212.167-15 chr8 111847943 111848157 + 1.5 NA Intergenic L1MA6|LINE|L1 471411 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 189.5-14 chr16 49945262 49945413 + 1.5 NA Intergenic Intergenic -79869 NR_104042 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 201.333-11 chr12 119552355 119552531 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie -41331 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 193.5-41 chr5 78233728 78233892 + 1.5 NA intron (NM_003664, intron 3 of 26) MIRb|SINE|MIR 60888 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 242.667-22 chr22 43884966 43885217 + 1.5 NA intron (NM_001177675, intron 4 of 6) MIRb|SINE|MIR 6922 NM_001177675 150379 Hs.248086 NM_138814 ENSG00000100341 PNPLA5 GS2L|dJ388M5|dJ388M5.4 patatin like phospholipase domain containing 5 protein-coding 244-22 chr3 182960693 182960866 + 1.5 NA intron (NM_020640, intron 4 of 6) intron (NM_020640, intron 4 of 6) 19759 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 258.167-7 chr12 88630685 88630950 + 1.5 NA Intergenic Intergenic -50344 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 490.166 chr1 211990124 211990624 + 1.5 NA intron (NM_015434, intron 7 of 19) L1ME4b|LINE|L1 -45179 NM_001286229 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 291.333-4 chr10 55671453 55671901 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity -43735 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 438-9 chr8 109077072 109077401 + 1.5 NA Intergenic Intergenic -9392 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 181-15 chr16 8328939 8329157 + 1.5 NA Intergenic Intergenic 260790 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 270.167 chr1 75614638 75614916 + 1.5 NA intron (NM_001320283, intron 1 of 21) CpG 1386 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 299.5-7 chr13 84917505 84917822 + 1.5 NA Intergenic Intergenic 134009 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 386-9 chr6 54652996 54653500 + 1.5 NA Intergenic Intergenic -193523 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 284-2 chr1 179288236 179288481 + 1.5 NA Intergenic L2|LINE|L2 -5356 NM_001252512 6646 Hs.445588 NM_003101 ENSG00000057252 SOAT1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT sterol O-acyltransferase 1 protein-coding 225-5 chr10 9311862 9312042 + 1.5 NA Intergenic L1MC4|LINE|L1 -16359 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 274.167-17 chr7 44461679 44462217 + 1.5 NA intron (NM_015332, intron 2 of 5) intron (NM_015332, intron 2 of 5) 28710 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 200.5-18 chr16 5524039 5524217 + 1.5 NA Intergenic Intergenic 92122 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 224.833-22 chr6 92728378 92728531 + 1.5 NA Intergenic Intergenic 691105 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 177.667-25 chr20 24785590 24785753 + 1.5 NA Intergenic Intergenic -163598 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 498.001-2 chr21 27470472 27470994 + 1.5 NA Intergenic Intergenic -251646 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 291.5-24 chr3 84325920 84326282 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 543474 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 269-33 chr8 138763308 138763736 + 1.5 NA intron (NM_152888, intron 16 of 64) intron (NM_152888, intron 16 of 64) 150519 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 247.167-22 chr8 141203875 141204157 + 1.5 NA Intergenic L1MEc|LINE|L1 24558 NM_001286648 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 164.667-28 chr2 159996954 159997125 + 1.5 NA intron (NM_001007267, intron 11 of 26) L1MCa|LINE|L1 65576 NM_001195641 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 232.834-6 chr15 68579526 68579714 + 1.5 NA intron (NM_006091, intron 1 of 11) CpG 627 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 183.5-27 chr3 31138401 31138636 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 23269 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 236.5-14 chr17 45235628 45236053 + 1.5 NA intron (NM_005892, intron 6 of 26) intron (NM_005892, intron 6 of 26) -12085 NR_110325 100133991 Hs.668927 NR_024434 ENSG00000267278 MAP3K14-AS1 - MAP3K14 antisense RNA 1 ncRNA 166.667-7 chr11 39970669 39970846 + 1.5 NA Intergenic Intergenic 322373 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 270.833-8 chr2 51128082 51128379 + 1.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 95629 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 328-2 chr1 166937043 166937354 + 1.5 NA intron (NM_199351, intron 4 of 9) intron (NM_199351, intron 4 of 9) 38342 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 417.833-4 chr11 102493994 102494832 + 1.5 NA intron (NR_135076, intron 2 of 2) L2a|LINE|L2 27158 NR_135076 102723838 Hs.738066 NR_135076 ENSG00000255482 LOC102723838 - uncharacterized LOC102723838 ncRNA 366-17 chr8 139115937 139116267 + 1.5 NA Intergenic Intergenic -202061 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 298.5-12 chr15 50402755 50403121 + 1.5 NA Intergenic L1MC5a|LINE|L1 -21467 NM_001283049 9101 Hs.443731 NM_005154 ENSG00000138592 USP8 HumORF8|PITA4|SPG59|UBPY ubiquitin specific peptidase 8 protein-coding 241.167-13 chr17 28854993 28855224 + 1.5 NA promoter-TSS (NM_005702) promoter-TSS (NM_005702) 92 NM_005702 26284 Hs.3426 NM_005702 ENSG00000132591 ERAL1 CEGA|ERA|ERA-W|ERAL1A|ERAL1B|H-ERA|HERA-A|HERA-B|PRLTS6 Era like 12S mitochondrial rRNA chaperone 1 protein-coding 409.5-4 chr2 20636067 20636428 + 1.5 NA intron (NM_022460, intron 4 of 6) intron (NM_022460, intron 4 of 6) 14851 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 194-37 chr6 140514972 140515196 + 1.5 NA Intergenic L1ME3A|LINE|L1 -168730 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 280.333-7 chr12 46934099 46934449 + 1.5 NA Intergenic Intergenic -108277 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 189.667-32 chr3 118485907 118486240 + 1.5 NA Intergenic Intergenic -155695 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 352.999-2 chr3 38961158 38961411 + 1.5 NA intron (NM_001349253, intron 2 of 29) MIRc|SINE|MIR -10723 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 266-20 chr6 12334307 12334689 + 1.5 NA Intergenic L2b|LINE|L2 44137 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 275.667-12 chr19 44741938 44742331 + 1.5 NA Intergenic Intergenic -6574 NM_005178 602 Hs.31210 NM_005178 ENSG00000069399 BCL3 BCL4|D19S37 BCL3 transcription coactivator protein-coding 394.167-3 chr10 61909926 61910381 + 1.5 NA intron (NM_032199, intron 2 of 9) intron (NM_032199, intron 2 of 9) 8454 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 176.167-7 chr11 39315602 39315801 + 1.5 NA Intergenic Intergenic 666843 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 312.5-4 chr11 73478653 73479040 + 1.5 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 102178 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 279-9 chr14 56565018 56565300 + 1.5 NA Intergenic L2b|LINE|L2 -14639 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 177.667-29 chr3 31359791 31360009 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -173025 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 606.5-2 chr14 22162787 22163602 + 1.5 NA Intergenic Intergenic 269559 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 402.5-6 chr4 31675230 31675954 + 1.5 NA Intergenic Intergenic 169048 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 284.834-6 chr3 152213839 152214059 + 1.5 NA Intergenic Intergenic -8520 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 169.333-39 chr2 226789045 226789468 + 1.5 NA intron (NM_005544, intron 1 of 1) intron (NM_005544, intron 1 of 1) 9534 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 343.834-2 chr13 21625126 21625593 + 1.5 NA Intergenic FLAM_C|SINE|Alu -21189 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 229-22 chr4 89158037 89158277 + 1.5 NA Intergenic GA-rich|Low_complexity|Low_complexity 45340 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 209.167-23 chr4 18425575 18425844 + 1.5 NA Intergenic Intergenic -403834 NR_158565 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 674.167-2 chr20 23441179 23441970 + 1.5 NA intron (NM_138283, intron 2 of 3) MER2|DNA|TcMar-Tigger 1889 NM_138283 128817 Hs.352134 NM_138283 ENSG00000125823 CSTL1 CTES1|RCET11|dJ322G13.4 cystatin like 1 protein-coding 259-39 chr7 33470435 33470723 + 1.5 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 341015 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 211.333-30 chr3 116341123 116341332 + 1.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -18797 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 235.5-17 chr4 128462995 128463230 + 1.5 NA intron (NR_125882, intron 1 of 8) MLT1B|LTR|ERVL-MaLR 35096 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 193.5-21 chr19 42285771 42285993 + 1.5 NA intron (NM_015125, intron 1 of 19) intron (NM_015125, intron 1 of 19) 1217 NM_015125 23152 Hs.388236 NM_015125 ENSG00000079432 CIC MRD45 capicua transcriptional repressor protein-coding 198.5-6 chr10 55519556 55519902 + 1.5 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -79313 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 231-29 chr7 85055198 85055647 + 1.5 NA intron (NM_152754, intron 7 of 16) intron (NM_152754, intron 7 of 16) 66509 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 213.667-29 chr22 42070589 42070906 + 1.5 NA promoter-TSS (NM_001362850) promoter-TSS (NM_001362850) 65 NM_000262 4668 Hs.75372 NM_000262 ENSG00000198951 NAGA D22S674|GALB alpha-N-acetylgalactosaminidase protein-coding 338.5-7 chr3 74135019 74135426 + 1.5 NA Intergenic Intergenic 325978 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 277-25 chr6 64003898 64004105 + 1.5 NA intron (NM_001292009, intron 33 of 43) THE1C|LTR|ERVL-MaLR 197165 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 428.667-8 chr4 158625006 158625514 + 1.5 NA intron (NM_001253733, intron 10 of 17) L3|LINE|CR1 46627 NM_001008393 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 222.167-8 chr13 24157620 24157896 + 1.5 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -2962 NM_001166271 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 225.833-22 chr7 27780124 27780478 + 1.5 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 40206 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 402.833 chr22 28276287 28276852 + 1.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -183300 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 450.333-2 chr10 51066112 51066608 + 1.5 NA intron (NR_120678, intron 1 of 1) intron (NR_120678, intron 1 of 1) 2192 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 210.333-37 chr9 14365860 14366226 + 1.5 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) 32940 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 247.167-12 chr21 28381896 28382238 + 1.5 NA Intergenic Intergenic -153400 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 367 chr1 94646132 94646420 + 1.5 NA intron (NR_160780, intron 3 of 5) intron (NR_160780, intron 3 of 5) 99624 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 268.833-6 chr14 46436786 46437080 + 1.5 NA intron (NR_102702, intron 3 of 3) AluJb|SINE|Alu -34426 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 391.833-4 chr2 231706099 231706360 + 1.5 NA Intergenic Intergenic -2296 NM_002823 5757 Hs.459927 NM_002823 ENSG00000187514 PTMA TMSA prothymosin alpha protein-coding 295.167-21 chr7 79997531 79997869 + 1.5 NA Intergenic MER44B|DNA|TcMar-Tigger -137131 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 260.167-5 chr11 9380862 9381114 + 1.5 NA Intergenic Intergenic -3664 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 332.001-3 chr2 58664140 58664590 + 1.5 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 143612 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 292-11 chr16 12285516 12285759 + 1.5 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 308903 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 214.5-33 chr7 117137422 117137681 + 1.5 NA intron (NR_161419, intron 7 of 15) intron (NR_161419, intron 7 of 15) 8041 NR_002331 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 300-16 chr5 63402873 63403148 + 1.5 NA Intergenic L1MA10|LINE|L1 559282 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 166-28 chr14 87399416 87399559 + 1.5 NA Intergenic LTR37-int|LTR|ERV1 255807 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 180-3 chr1 164564835 164565094 + 1.5 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 5242 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 195-47 chr8 125108642 125108854 + 1.5 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 16888 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 198-24 chr2 222914517 222914754 + 1.5 NA intron (NM_004457, intron 4 of 16) L2|LINE|L2 53599 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 240 chr1 20661367 20661588 + 1.5 NA promoter-TSS (NM_005216) promoter-TSS (NM_005216) 67 NM_005216 1650 Hs.523145 NM_005216 ENSG00000244038 DDOST AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit protein-coding 336-19 chr9 75185197 75185793 + 1.5 NA Intergenic Intergenic 96981 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 327 chr1 91500833 91501104 + 1.5 NA promoter-TSS (NM_001134420) promoter-TSS (NM_001134420) 117 NM_003503 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 229.333-23 chr20 49268284 49268584 + 1.5 NA intron (NM_021035, intron 3 of 13) intron (NM_021035, intron 3 of 13) 9623 NM_021035 57169 Hs.371794 NM_021035 ENSG00000124201 ZNFX1 - zinc finger NFX1-type containing 1 protein-coding 193.5-44 chr6 129825498 129825733 + 1.5 NA Intergenic Intergenic 35700 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 291.833-7 chr18 33067489 33067683 + 1.5 NA intron (NM_001308126, intron 21 of 23) AluSp|SINE|Alu -294563 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 167.5-34 chr6 10441372 10441563 + 1.5 NA intron (NR_132993, intron 1 of 3) intron (NR_132993, intron 1 of 3) 1750 NR_049872 100846998 NR_049872 ENSG00000263705 MIR5689 - microRNA 5689 ncRNA 431.834-2 chr6 1953374 1953707 + 1.5 NA intron (NM_001253846, intron 6 of 10) intron (NM_001253846, intron 6 of 10) 222451 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 255.667-12 chr5 94942463 94942805 + 1.5 NA intron (NM_001297777, intron 3 of 19) intron (NM_001297777, intron 3 of 19) 139232 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 601.333 chr11 124953527 124954188 + 1.5 NA promoter-TSS (NM_025004) promoter-TSS (NM_025004) -345 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 167.5-41 chr8 92710341 92710489 + 1.5 NA Intergenic Intergenic -54921 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 275.167-11 chr14 51310028 51310380 + 1.5 NA intron (NR_145423, intron 1 of 1) intron (NR_145423, intron 1 of 1) 18181 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 322.5-26 chr6 41770154 41770584 + 1.5 NA 3' UTR (NM_006653, exon 7 of 7) 3' UTR (NM_006653, exon 7 of 7) 9531 NM_006653 10817 Hs.194208 NM_006653 ENSG00000137218 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 222.167-33 chr6 73550899 73551183 + 1.5 NA Intergenic AluSx1|SINE|Alu -30009 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 301.834-14 chr9 87381351 87381623 + 1.5 NA Intergenic Intergenic -115741 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 260.667-10 chr12 86003616 86003867 + 1.5 NA intron (NM_001351291, intron 4 of 7) intron (NM_001351291, intron 4 of 7) 129446 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 236.5-10 chr15 47477028 47477232 + 1.5 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -240375 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 216.667-31 chr3 101381952 101382249 + 1.5 NA intron (NM_001282803, intron 3 of 20) intron (NM_001282803, intron 3 of 20) -61525 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 239.167-36 chr9 70273729 70274067 + 1.5 NA intron (NM_015110, intron 3 of 24) L1MEd|LINE|L1 14920 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 224-47 chr8 125629204 125629376 + 1.5 NA Intergenic L1MA6|LINE|L1 197081 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 364.666-9 chr8 117069120 117069483 + 1.5 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -65694 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 411.833-3 chr17 29008037 29008573 + 1.5 NA Intergenic Intergenic -1865 NM_001290202 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding 325.833-8 chr7 92823608 92823894 + 1.5 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 10208 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 290-19 chr8 91081796 91082099 + 1.5 NA intron (NM_001286745, intron 6 of 7) intron (NM_001286745, intron 6 of 7) 11603 NM_001286745 51633 Hs.30532 NM_016023 ENSG00000155100 OTUD6B CGI-77|DUBA-5|DUBA5|IDDFSDA OTU domain containing 6B protein-coding 275.5-31 chr8 142615503 142615705 + 1.5 NA Intergenic Intergenic -1125 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 227.333-19 chr2 57298371 57298536 + 1.5 NA Intergenic Intergenic -609198 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 451.333-7 chr9 71604366 71604904 + 1.5 NA Intergenic Intergenic -157664 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 250.667-30 chr3 137927844 137928019 + 1.5 NA Intergenic Intergenic -70885 NM_001002026 51208 Hs.655324 NM_016369 ENSG00000066405 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 313.5-6 chr13 114252851 114253244 + 1.5 NA intron (NM_001318518, intron 12 of 16) AluSz|SINE|Alu 8542 NR_049839 100847035 NR_049839 ENSG00000264539 MIR548AR - microRNA 548ar ncRNA 289.333-11 chr14 49311037 49311284 + 1.5 NA Intergenic Intergenic 275220 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 191-49 chr8 109041050 109041389 + 1.5 NA Intergenic Intergenic -45409 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 213.5-5 chr12 45573829 45574051 + 1.5 NA Intergenic Intergenic 153981 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 270-2 chr1 209258018 209258292 + 1.5 NA Intergenic MER77B|LTR|ERVL -67301 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 394.167-13 chr7 101059440 101059971 + 1.5 NA TTS (NR_133665) TTS (NR_133665) -25776 NM_030961 81844 Hs.521092 NM_030961 ENSG00000169871 TRIM56 RNF109 tripartite motif containing 56 protein-coding 247.167-2 chr1 175192556 175192752 + 1.5 NA 5' UTR (NM_014656, exon 1 of 4) 5' UTR (NM_014656, exon 1 of 4) 122 NM_014656 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 318.5-14 chr7 38038406 38038949 + 1.5 NA Intergenic L1MC5|LINE|L1 117358 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 253 chr1 89144770 89144938 + 1.5 NA intron (NM_207398, intron 8 of 10) L1MA9|LINE|L1 -18740 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 506.668 chr17 52375403 52375972 + 1.5 NA Intergenic Intergenic -14835 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 247-24 chr3 156331255 156331574 + 1.5 NA intron (NM_172159, intron 1 of 13) Charlie18a|DNA|hAT-Charlie 40377 NM_001308222 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 430.501-2 chr16 66740170 66740565 + 1.5 NA intron (NM_001286157, intron 3 of 11) intron (NM_001286157, intron 3 of 11) 11242 NM_006141 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 444.167-4 chr6 38720487 38720869 + 1.5 NA intron (NM_001371, intron 1 of 91) L1M3f|LINE|L1 5367 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 403-8 chr9 114290967 114291743 + 1.5 NA intron (NM_032888, intron 48 of 60) intron (NM_032888, intron 48 of 60) -31668 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 355.834-7 chr22 22809193 22809558 + 1.5 NA Intergenic Intergenic -13401 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 224-51 chr9 36097852 36098146 + 1.5 NA intron (NM_021111, intron 10 of 20) L1MA8|LINE|L1 -38537 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 266.5-11 chr14 55154615 55154885 + 1.5 NA exon (NM_014750, exon 15 of 19) exon (NM_014750, exon 15 of 19) 17767 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 305.667-16 chr6 50298838 50299178 + 1.5 NA Intergenic Intergenic -249079 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 165-47 chr7 16492630 16492820 + 1.5 NA Intergenic MER45B|DNA|hAT-Tip100 -26987 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 368.333-8 chr7 98371204 98371526 + 1.5 NA intron (NM_018842, intron 1 of 13) intron (NM_018842, intron 1 of 13) 29725 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 342.834-4 chr12 9183818 9184239 + 1.5 NA intron (NM_002864, intron 13 of 35) intron (NM_002864, intron 13 of 35) 24367 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 278.167-12 chr17 31684481 31684767 + 1.5 NA Intergenic L1ME3B|LINE|L1 109213 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 191.5-27 chr2 177143453 177143639 + 1.5 NA Intergenic Intergenic 68865 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 386.667 chr10 1466858 1467280 + 1.5 NA intron (NM_018702, intron 1 of 9) (TC)n|Simple_repeat|Simple_repeat -59561 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168 ADARB2 antisense RNA 1 ncRNA 330-12 chr19 45450215 45450450 + 1.5 NA intron (NM_001369413, intron 1 of 10) intron (NM_001369413, intron 1 of 10) 434 NM_001369417 2067 Hs.435981 NM_001983 ENSG00000012061 ERCC1 COFS4|RAD10|UV20 ERCC excision repair 1, endonuclease non-catalytic subunit protein-coding 225-15 chr2 68335628 68335900 + 1.5 NA Intergenic Intergenic -15713 NM_001111101 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 216.5-7 chr10 59940627 59940881 + 1.5 NA Intergenic MIR|SINE|MIR 20159 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 245-32 chr5 132237416 132237705 + 1.5 NA Intergenic ORSL-2a|DNA|hAT-Tip100 -9707 NM_001017974 8974 Hs.519568 NM_004199 ENSG00000072682 P4HA2 MYP25 prolyl 4-hydroxylase subunit alpha 2 protein-coding 208.667-9 chr11 59669127 59669309 + 1.5 NA promoter-TSS (NM_152716) promoter-TSS (NM_152716) -181 NM_152716 219988 Hs.591960 NM_152716 ENSG00000166889 PATL1 Pat1b|hPat1b PAT1 homolog 1, processing body mRNA decay factor protein-coding 480.667-2 chr15 76147726 76148323 + 1.5 NA intron (NM_152335, intron 3 of 10) intron (NM_152335, intron 3 of 10) 33462 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 163.667-46 chr5 116067864 116068006 + 1.5 NA Intergenic Intergenic 16469 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 239.167-19 chr2 185166502 185166665 + 1.5 NA intron (NR_136319, intron 2 of 2) AluSg|SINE|Alu 489 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 190.667-54 chr8 43023819 43023986 + 1.5 NA 3' UTR (NM_032410, exon 22 of 22) 3' UTR (NM_032410, exon 22 of 22) -32397 NR_033698 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 287.167-9 chr22 40591085 40591466 + 1.5 NA intron (NM_020831, intron 2 of 14) AluYk3|SINE|Alu 45444 NM_001282662 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 442-3 chr14 84288621 84289066 + 1.5 NA Intergenic Intergenic -983089 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 217-4 chr12 103209590 103209821 + 1.5 NA Intergenic Intergenic 57863 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 348.5-13 chr2 107490467 107490881 + 1.5 NA Intergenic Intergenic -38745 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 286.5-4 chr11 131341550 131341926 + 1.5 NA Intergenic Intergenic -28877 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 288.833-18 chr8 76623849 76624157 + 1.5 NA intron (NR_024360, intron 2 of 3) intron (NR_024360, intron 2 of 3) -57244 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 311.167-6 chr2 231255 231569 + 1.5 NA intron (NM_015677, intron 6 of 9) intron (NM_015677, intron 6 of 9) 24928 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 214.667-30 chr4 170589826 170590024 + 1.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger 153810 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 469.166 chr10 55287158 55287791 + 1.5 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -311568 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 189-44 chr4 147166336 147166509 + 1.5 NA Intergenic Intergenic 178295 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 256.833-18 chrX 53218226 53218516 + 1.5 NA non-coding (NR_148672, exon 3 of 27) non-coding (NR_148672, exon 3 of 27) 6836 NM_001353979 8242 Hs.631768 NM_004187 ENSG00000126012 KDM5C DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169 lysine demethylase 5C protein-coding 406.5 chr1 214982592 214982925 + 1.5 NA Intergenic Intergenic -22784 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 275.833-2 chr1 161227139 161227499 + 1.5 NA TTS (NR_049819) TTS (NR_049819) 133 NR_049819 100847090 NR_049819 ENSG00000284035 MIR5187 mir-5187 microRNA 5187 ncRNA 383.5-6 chr4 33461863 33462177 + 1.5 NA Intergenic L1ME2|LINE|L1 577873 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 231.167-23 chr3 133648616 133648906 + 1.5 NA intron (NM_001363889, intron 10 of 27) AluSp|SINE|Alu 13180 NM_001363889 11073 Hs.593379 NM_007027 ENSG00000163781 TOPBP1 Dpb11|TOP2BP1 DNA topoisomerase II binding protein 1 protein-coding 318-12 chr20 8660992 8661587 + 1.5 NA intron (NM_182734, intron 9 of 32) intron (NM_182734, intron 9 of 32) -169896 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 235.5-11 chr20 58175824 58176014 + 1.5 NA Intergenic Intergenic 25017 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 289.333 chr1 12618920 12619131 + 1.5 NA promoter-TSS (NM_004753) promoter-TSS (NM_004753) -815 NM_004753 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 268.334-3 chr14 70857179 70857428 + 1.5 NA Intergenic MER5A1|DNA|hAT-Charlie -47790 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 215.833-28 chr9 4987817 4988469 + 1.5 NA intron (NM_004972, intron 2 of 24) intron (NM_004972, intron 2 of 24) 2898 NM_004972 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 184.5-7 chr1 169169479 169169675 + 1.5 NA intron (NM_197972, intron 10 of 11) intron (NM_197972, intron 10 of 11) 62887 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 618.833 chr18 12391272 12392104 + 1.5 NA Intergenic L1ME3C|LINE|L1 -14412 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 270-8 chr11 19447565 19447769 + 1.5 NA intron (NM_001111018, intron 1 of 37) L2c|LINE|L2 59562 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 350-7 chr14 46305058 46305519 + 1.5 NA intron (NR_102702, intron 3 of 3) L1MEc|LINE|L1 -166071 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 176.333-22 chr3 47521665 47521857 + 1.5 NA Intergenic AluSz|SINE|Alu -8049 NM_001031703 54859 Hs.311100 NM_017713 ENSG00000163832 ELP6 C3orf75|TMEM103 elongator acetyltransferase complex subunit 6 protein-coding 302-22 chr8 128244064 128244422 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 94127 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 326.5-11 chr2 59640081 59640351 + 1.5 NA Intergenic L1ME3|LINE|L1 422508 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 298.166-2 chr1 229114888 229115216 + 1.5 NA Intergenic Intergenic 59749 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 305.166-4 chr6 142188560 142189030 + 1.5 NA intron (NM_001286371, intron 4 of 6) intron (NM_001286371, intron 4 of 6) 41532 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 232-27 chr20 50286743 50287188 + 1.5 NA Intergenic Tigger18a|DNA|TcMar-Tigger -5755 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 472.5-8 chr6 124087582 124087962 + 1.5 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) -195233 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 379.334 chr17 59654500 59654874 + 1.5 NA intron (NM_001288653, intron 5 of 31) AluSx|SINE|Alu 34792 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 226.667-25 chr20 6077319 6077642 + 1.5 NA intron (NM_017671, intron 14 of 14) intron (NM_017671, intron 14 of 14) -23420 NM_152611 164312 Hs.149133 NM_152611 ENSG00000125872 LRRN4 C20orf75|NLRR-4|NLRR4|dJ1056H1.1 leucine rich repeat neuronal 4 protein-coding 251.167-12 chr2 236562381 236562553 + 1.5 NA Intergenic L1M5|LINE|L1 -7358 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 256.167-7 chr10 70367652 70367961 + 1.5 NA intron (NR_103468, intron 1 of 2) L1ME1|LINE|L1 8973 NM_001278213 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 258-4 chr10 43437872 43438090 + 1.5 NA intron (NM_001355444, intron 1 of 3) AluJb|SINE|Alu 870 NM_001355444 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 208.167-18 chr3 155081917 155082061 + 1.5 NA intron (NM_001354644, intron 1 of 3) intron (NM_001354644, intron 1 of 3) 1978 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 844.499 chr14 50955012 50956186 + 1.5 NA Intergenic LTR88b|LTR|Gypsy? -11116 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 239.167-4 chr1 202034357 202034527 + 1.5 NA Intergenic MIR|SINE|MIR 23855 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 210-27 chr22 26878361 26878520 + 1.5 NA intron (NR_146604, intron 4 of 5) L1MEg2|LINE|L1 18229 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 271.667-8 chr12 17974343 17974572 + 1.5 NA Intergenic LTR16C|LTR|ERVL 115736 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 195.167-8 chr11 34613222 34613374 + 1.5 NA Intergenic Intergenic -7795 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 268-31 chr4 128885042 128885396 + 1.5 NA intron (NM_144643, intron 20 of 20) intron (NM_144643, intron 20 of 20) 73375 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 249-27 chr4 80362538 80362867 + 1.5 NA intron (NM_152770, intron 1 of 5) intron (NM_152770, intron 1 of 5) 26982 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 269-25 chr6 106820386 106820853 + 1.5 NA Intergenic LTR35A|LTR|ERV1 -33078 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 416-2 chr1 200374234 200374673 + 1.5 NA promoter-TSS (NR_040064) promoter-TSS (NR_040064) -661 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 260.333-2 chr12 2244007 2244442 + 1.5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -20743 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 375.833-5 chr11 29159409 29159848 + 1.5 NA Intergenic MIRb|SINE|MIR -434785 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 221.5-15 chr3 110670535 110670759 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 399312 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 524.167-3 chr8 121832504 121832962 + 1.5 NA Intergenic Intergenic -191293 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 367.667-4 chr16 85615760 85616515 + 1.5 NA intron (NM_001278184, intron 1 of 14) intron (NM_001278184, intron 1 of 14) 2815 NM_001278184 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 525.167-4 chr8 123416576 123417197 + 1.5 NA exon (NM_018024, exon 1 of 6) exon (NM_018024, exon 1 of 6) 112 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 348.5-4 chr10 44459248 44459693 + 1.5 NA Intergenic Intergenic -74373 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 319.666-3 chr5 34914749 34915287 + 1.5 NA promoter-TSS (NM_018321) promoter-TSS (NM_018321) 486 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 317.167-8 chr2 190853432 190853676 + 1.5 NA Intergenic Intergenic -27267 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 261.167-10 chr16 76877961 76878144 + 1.5 NA Intergenic Intergenic 9116 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 263.333-7 chr14 70261458 70261657 + 1.5 NA Intergenic L1ME3E|LINE|L1 -13756 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 355.333-6 chr5 71778526 71778921 + 1.5 NA Intergenic Intergenic 59448 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 242.5-26 chr2 218806169 218806495 + 1.5 NA intron (NM_000784, intron 1 of 8) MER20|DNA|hAT-Charlie -16758 NR_128707 103504730 NR_128707 ENSG00000283639 MIR9500 hsa-mir-9500 microRNA 9500 ncRNA 321.5-18 chr3 142814689 142815017 + 1.5 NA Intergenic L1MEd|LINE|L1 74230 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 274.999 chr2 207711455 207711655 + 1.5 NA promoter-TSS (NM_001142300) promoter-TSS (NM_001142300) 15 NM_001142300 151195 Hs.471234 NM_152523 ENSG00000163249 CCNYL1 - cyclin Y like 1 protein-coding 186-42 chr8 88864997 88865220 + 1.5 NA Intergenic Intergenic -537625 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 189-5 chr10 19702313 19702509 + 1.5 NA intron (NM_001142308, intron 38 of 39) intron (NM_001142308, intron 38 of 39) 26139 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 265.833-2 chr1 176466679 176466951 + 1.5 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 3640 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 326.5-14 chr4 39458661 39458898 + 1.5 NA promoter-TSS (NM_006859) promoter-TSS (NM_006859) 169 NM_001024921 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 234.5-18 chr17 76264926 76265223 + 1.5 NA promoter-TSS (NM_182565) promoter-TSS (NM_182565) -274 NM_182565 283991 Hs.744981 NM_182565 ENSG00000185262 UBALD2 FAM100B UBA like domain containing 2 protein-coding 275-4 chr10 33263881 33264191 + 1.5 NA intron (NR_045259, intron 2 of 15) intron (NR_045259, intron 2 of 15) 70631 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 288.167 chr1 110348698 110349086 + 1.5 NA Intergenic Intergenic 9569 NM_022768 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 177.5-9 chr11 66088194 66088431 + 1.5 NA intron (NM_018026, intron 1 of 23) L1ME3A|LINE|L1 18040 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 181.666-7 chr9 82989256 82989498 + 1.5 NA intron (NM_152573, intron 16 of 16) intron (NM_152573, intron 16 of 16) 73765 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 200-36 chr6 49921959 49922112 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 27409 NR_163261 403339 Hs.745543 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 pseudo 394.333-5 chr3 62082975 62083401 + 1.5 NA intron (NM_002841, intron 5 of 29) intron (NM_002841, intron 5 of 29) 235759 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 274.667-25 chr8 56963052 56963389 + 1.5 NA 3' UTR (NM_017813, exon 5 of 5) 3' UTR (NM_017813, exon 5 of 5) 30647 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 237.167-5 chr10 118743848 118744082 + 1.5 NA intron (NM_153810, intron 1 of 8) L1ME1|LINE|L1 11005 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 218.5-9 chr11 25459275 25459783 + 1.5 NA Intergenic Intergenic -729594 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 225.167-24 chr4 75208761 75209042 + 1.5 NA Intergenic Intergenic -124193 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 231-4 chr1 246259279 246259592 + 1.5 NA intron (NM_022743, intron 5 of 11) L1PA16|LINE|L1 157977 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 505.667-6 chr8 132672087 132672700 + 1.5 NA intron (NR_135907, intron 1 of 10) intron (NR_135907, intron 1 of 10) 3152 NM_001321965 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 232.667-24 chr3 25843283 25843451 + 1.5 NA Intergenic L1MA9|LINE|L1 30328 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 295-28 chr8 57372175 57372486 + 1.5 NA Intergenic MER50|LTR|ERV1 28543 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 352-12 chr6 113863828 113864141 + 1.5 NA TTS (NM_002356) TTS (NM_002356) 6639 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 274.333-16 chr2 137173395 137173729 + 1.5 NA intron (NM_001316349, intron 7 of 27) intron (NM_001316349, intron 7 of 27) 408017 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 317.833-3 chr12 25385975 25386630 + 1.5 NA Intergenic CpG -135373 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 255.5-34 chr7 84541980 84542193 + 1.5 NA intron (NR_110079, intron 1 of 2) L1MA4|LINE|L1 9610 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 295.5-4 chr12 56655293 56655603 + 1.5 NA Intergenic Intergenic -9464 NM_001686 506 Hs.406510 NM_001686 ENSG00000110955 ATP5F1B ATP5B|ATPMB|ATPSB|HEL-S-271 ATP synthase F1 subunit beta protein-coding 258.333-5 chr11 124875822 124876101 + 1.5 NA promoter-TSS (NM_001370359) promoter-TSS (NM_001370359) -221 NM_001370356 64221 Hs.435621 NM_022370 ENSG00000154134 ROBO3 HGPPS|HGPPS1|HGPS|RBIG1|RIG1 roundabout guidance receptor 3 protein-coding 202.5-46 chr6 33599281 33599450 + 1.5 NA Intergenic MER2B|DNA|TcMar-Tigger -6027 NR_027908 401253 Hs.520075 NM_207497 ENSG00000197251 LINC00336 C6orf227|NCRNA00336 long intergenic non-protein coding RNA 336 ncRNA 204.667-24 chr2 100243904 100244131 + 1.5 NA intron (NR_103730, intron 1 of 2) MLT1H2|LTR|ERVL-MaLR 35763 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 421.333 chr10 88141968 88142346 + 1.5 NA Intergenic L1ME3B|LINE|L1 278532 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 254.167-24 chr5 10640933 10641195 + 1.5 NA intron (NM_001164440, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR 76994 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 256.5-21 chr5 129156889 129157094 + 1.5 NA Intergenic MER21B|LTR|ERVL 59303 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 692.167-2 chr4 67700121 67700954 + 1.5 NA promoter-TSS (NR_015439) promoter-TSS (NR_015439) 618 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 304.333-8 chr15 101256783 101257314 + 1.5 NA Intergenic Intergenic -5000 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 341-9 chr6 124217060 124217532 + 1.5 NA intron (NM_001300737, intron 2 of 7) HAL1|LINE|L1 -65709 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 217.667-37 chr7 105103180 105103473 + 1.5 NA intron (NM_182931, intron 17 of 26) intron (NM_182931, intron 17 of 26) 89121 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 262.667-24 chr20 58327536 58327826 + 1.5 NA intron (NM_020673, intron 2 of 6) MLT1F1|LTR|ERVL-MaLR 17966 NM_020673 57403 Hs.529044 NM_020673 ENSG00000124209 RAB22A - RAB22A, member RAS oncogene family protein-coding 533.334-2 chr3 191774667 191775317 + 1.5 NA Intergenic Intergenic 313829 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 238.667-14 chr2 122452053 122452324 + 1.5 NA Intergenic L1PA17|LINE|L1 621293 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 240-4 chr10 93079169 93079594 + 1.5 NA Intergenic Intergenic 5488 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 304 chr1 21255084 21255359 + 1.5 NA intron (NM_001113347, intron 6 of 16) intron (NM_001113347, intron 6 of 16) 24394 NM_001113347 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 289.333-9 chr10 123216376 123216753 + 1.5 NA Intergenic L1MDa|LINE|L1 62162 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 311.167-9 chr3 164677746 164678163 + 1.5 NA Intergenic L1MD3|LINE|L1 153526 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 196.167-20 chr18 45275513 45275739 + 1.5 NA intron (NM_001371319, intron 4 of 23) MIRb|SINE|MIR 62631 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 505.5-2 chr14 102594136 102594727 + 1.5 NA intron (NM_015156, intron 2 of 11) intron (NM_015156, intron 2 of 11) 1782 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 252.667-22 chr8 96495097 96495353 + 1.5 NA intron (NM_002998, intron 1 of 4) CpG 1412 NM_002998 6383 Hs.1501 NM_002998 ENSG00000169439 SDC2 CD362|HSPG|HSPG1|SYND2 syndecan 2 protein-coding 310.833-7 chr2 170425237 170425751 + 1.5 NA intron (NM_001083615, intron 22 of 33) intron (NM_001083615, intron 22 of 33) -74551 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 508.668 chr9 13176910 13177329 + 1.5 NA intron (NM_003829, intron 19 of 45) intron (NM_003829, intron 19 of 45) 102445 NM_001261406 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 164.167-14 chr12 93143306 93143714 + 1.5 NA intron (NR_040096, intron 3 of 4) MIRc|SINE|MIR -30856 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 334-13 chr6 144899308 144899762 + 1.5 NA Intergenic L1ME1|LINE|L1 493880 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 178.833-16 chr17 51176984 51177352 + 1.5 NA TTS (NM_017643) TTS (NM_017643) 10446 NM_001018138 4831 Hs.463456 NM_002512 ENSG00000243678 NME2 NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF NME/NM23 nucleoside diphosphate kinase 2 protein-coding 239.167-12 chr14 51986988 51987192 + 1.5 NA Intergenic Intergenic -2456 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 282-11 chr12 22863862 22864067 + 1.5 NA Intergenic Intergenic 238793 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 303.333-4 chr14 88841064 88841503 + 1.5 NA intron (NM_198310, intron 5 of 13) intron (NM_198310, intron 5 of 13) 16632 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 277.833-14 chr8 113870601 113871082 + 1.5 NA Intergenic L1MEg|LINE|L1 -433902 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 200.5-43 chr8 108854008 108854230 + 1.5 NA Intergenic L1M4b|LINE|L1 -66525 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 262-17 chr4 4861193 4861480 + 1.5 NA intron (NM_002448, intron 1 of 1) intron (NM_002448, intron 1 of 1) 1671 NM_002448 4487 Hs.424414 NM_002448 ENSG00000163132 MSX1 ECTD3|HOX7|HYD1|STHAG1 msh homeobox 1 protein-coding 262.833-12 chr4 115715306 115715643 + 1.5 NA Intergenic Intergenic -584251 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 276-28 chr9 121743460 121743822 + 1.5 NA intron (NM_138709, intron 1 of 13) intron (NM_138709, intron 1 of 13) 856 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 214.667-2 chr10 27008176 27008437 + 1.5 NA intron (NM_014915, intron 32 of 33) intron (NM_014915, intron 32 of 33) -66305 NR_026795 387644 Hs.529965 NR_026795 ENSG00000283709 FAM238C C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1 family with sequence similarity 238 member C ncRNA 286.333-17 chr9 92094145 92094513 + 1.5 NA intron (NM_001368273, intron 4 of 15) Kanga1|DNA|TcMar-Tc2 21084 NM_006415 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 268.833-20 chr7 115424505 115424873 + 1.5 NA Intergenic Intergenic 156752 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 308-19 chr6 140864241 140864526 + 1.5 NA Intergenic L1MEd|LINE|L1 180569 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 364.834 chr13 32639760 32640024 + 1.5 NA intron (NM_015032, intron 1 of 34) intron (NM_015032, intron 1 of 34) 53440 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 216.667-29 chr2 181791003 181791417 + 1.5 NA Intergenic Intergenic -100520 NM_001130445 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 366-19 chr9 125121906 125122207 + 1.5 NA intron (NM_173690, intron 2 of 18) intron (NM_173690, intron 2 of 18) 21472 NM_173690 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 250.167-9 chr14 71444848 71445051 + 1.5 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 6010 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 210.5-20 chr2 124654220 124654469 + 1.5 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 629057 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 198.5-9 chr12 80164065 80164239 + 1.5 NA intron (NM_001368062, intron 5 of 62) MIRb|SINE|MIR -45301 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 275.167-21 chr5 79613620 79613936 + 1.5 NA intron (NM_001114393, intron 2 of 15) intron (NM_001114393, intron 2 of 15) 1337 NM_001349551 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 289.5-5 chr14 20329465 20329791 + 1.5 NA intron (NM_182852, intron 1 of 7) L1MA8|LINE|L1 -3089 NR_003693 100113391 NR_003693 SNORD126 MIR1201|MIRN1201 small nucleolar RNA, C/D box 126 snoRNA 293.5 chr1 21956486 21956982 + 1.5 NA Intergenic Intergenic -19424 NM_001291860 3339 Hs.562227 NM_005529 ENSG00000142798 HSPG2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 heparan sulfate proteoglycan 2 protein-coding 165.333-51 chr8 132578131 132578409 + 1.5 NA intron (NR_135913, intron 10 of 10) intron (NR_135913, intron 10 of 10) -16791 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 204-32 chr5 64692814 64692994 + 1.5 NA intron (NM_001164442, intron 1 of 2) L2b|LINE|L2 2401 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 275.167-23 chr7 41818227 41818450 + 1.5 NA Intergenic Intergenic -115248 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 469.333-7 chr9 19492796 19493347 + 1.5 NA Intergenic Intergenic 84062 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 409.167-2 chr14 23034930 23035317 + 1.5 NA promoter-TSS (NM_002797) promoter-TSS (NM_002797) 22 NM_001144932 5693 Hs.422990 NM_002797 ENSG00000100804 PSMB5 LMPX|MB1|X proteasome subunit beta 5 protein-coding 349.333-7 chr20 59220711 59221250 + 1.5 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 29960 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 391.666 chr1 41282454 41283128 + 1.5 NA Intergenic Intergenic -40485 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 252.667-24 chr9 76023931 76024145 + 1.5 NA intron (NR_120409, intron 4 of 19) intron (NR_120409, intron 4 of 19) 133365 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 251-19 chr20 49589182 49589475 + 1.5 NA Intergenic AluJb|SINE|Alu -21191 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 219-29 chr6 150651615 150652054 + 1.5 NA intron (NM_001029884, intron 2 of 16) AluSz|SINE|Alu 18870 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 386.5-7 chr3 169111858 169112459 + 1.5 NA intron (NM_001366467, intron 8 of 15) intron (NM_001366467, intron 8 of 15) 33365 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 270.5-2 chr1 45302485 45302737 + 1.5 NA Intergenic AluSx1|SINE|Alu -1299 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 345-24 chr6 2259188 2259434 + 1.5 NA intron (NR_046229, intron 2 of 6) L1ME3G|LINE|L1 13558 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 476-2 chr16 9645757 9646094 + 1.5 NA Intergenic L2a|LINE|L2 -190420 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 468.667 chr15 79896771 79897147 + 1.5 NA promoter-TSS (NM_006441) promoter-TSS (NM_006441) 38 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 349.5-4 chr15 78638859 78639164 + 1.5 NA intron (NM_001256567, intron 1 of 4) intron (NM_001256567, intron 1 of 4) 2199 NM_000750 1143 Hs.624178 NM_000750 ENSG00000117971 CHRNB4 - cholinergic receptor nicotinic beta 4 subunit protein-coding 166.833-20 chr3 18988178 18988546 + 1.5 NA Intergenic Intergenic -160148 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 163.167-34 chr4 182457327 182457488 + 1.5 NA intron (NM_001080477, intron 3 of 27) MIR|SINE|MIR 214005 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 397.999 chr9 117477903 117478543 + 1.5 NA Intergenic L2a|LINE|L2 -63166 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 287.167-2 chr1 114758095 114758435 + 1.5 NA promoter-TSS (NM_001242892) promoter-TSS (NM_001242892) -215 NM_001242891 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 362.333-11 chr4 31691864 31692362 + 1.5 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat 185569 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 344.5-9 chr17 63099356 63099818 + 1.5 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 133352 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 232.167-21 chr7 94529740 94530006 + 1.5 NA intron (NM_001363427, intron 6 of 17) L2b|LINE|L2 20064 NM_001363428 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 585.666 chr12 64192616 64193381 + 1.5 NA 3' UTR (NM_001300941, exon 3 of 3) 3' UTR (NM_001300941, exon 3 of 3) 29298 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 179.667-14 chr18 8704804 8705096 + 1.5 NA intron (NR_120598, intron 1 of 1) CpG 2671 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 186.5-3 chr10 115576815 115577039 + 1.5 NA intron (NM_207303, intron 26 of 28) L1MA9|LINE|L1 483562 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 413.833 chr2 100733553 100734303 + 1.5 NA Intergenic Intergenic -86211 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 446.5-2 chr14 67999790 68000588 + 1.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 176597 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 328-3 chr1 227042857 227043196 + 1.5 NA intron (NM_001366010, intron 21 of 34) intron (NM_001366010, intron 21 of 34) 102732 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 308.5-15 chr2 203808530 203808873 + 1.5 NA Intergenic Intergenic -59070 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 342.833-9 chr19 14505571 14505904 + 1.5 NA Intergenic Intergenic -9588 NM_202494 10755 Hs.655012 NM_005716 ENSG00000123159 GIPC1 C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 GIPC PDZ domain containing family member 1 protein-coding 248.5-25 chr4 53935463 53935743 + 1.5 NA Intergenic Intergenic 51679 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 288.666-10 chr4 87011949 87012327 + 1.5 NA intron (NM_001313960, intron 1 of 17) intron (NM_001313960, intron 1 of 17) 5137 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 194.167-13 chr14 36747802 36747950 + 1.5 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 90308 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 444.667 chr11 15006064 15006832 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie -34097 NR_125898 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 364.667-5 chr12 118850049 118850467 + 1.5 NA Intergenic Intergenic -16722 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 459.667-2 chr12 66235747 66236188 + 1.5 NA intron (NM_007199, intron 8 of 11) intron (NM_007199, intron 8 of 11) -15115 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 283.5-15 chr8 58608731 58609003 + 1.5 NA intron (NM_001144772, intron 10 of 30) intron (NM_001144772, intron 10 of 30) 50540 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 302.5-14 chr6 161340194 161340568 + 1.5 NA Intergenic Intergenic -66320 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 303.166 chr14 71158434 71158685 + 1.5 NA Intergenic Intergenic -161917 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 256.833-13 chr5 106617247 106617566 + 1.5 NA Intergenic Intergenic 393608 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 321-20 chr5 73824898 73825204 + 1.5 NA intron (NM_001244364, intron 1 of 27) L2a|LINE|L2 11505 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 242-4 chr1 205387287 205387517 + 1.5 NA TTS (NR_038425) TTS (NR_038425) 14150 NR_038425 284576 Hs.585440 NR_038425 ENSG00000226235 LEMD1-AS1 - LEMD1 antisense RNA 1 ncRNA 368.5-4 chr11 103089495 103089918 + 1.5 NA intron (NM_001318740, intron 1 of 6) intron (NM_001318740, intron 1 of 6) 2454 NM_001318740 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 215.666-7 chr9 17113181 17113447 + 1.5 NA Intergenic L1MC1|LINE|L1 -21726 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 356.166-3 chr20 11179172 11179482 + 1.5 NA Intergenic Intergenic 94056 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 216.167-10 chr10 122981723 122982094 + 1.5 NA intron (NM_153336, intron 1 of 6) intron (NM_153336, intron 1 of 6) 1507 NM_001363531 118672 Hs.281004 NM_153336 ENSG00000179988 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 262.5-11 chr14 71319225 71319514 + 1.5 NA Intergenic Intergenic -1107 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 171.5-27 chr2 164058363 164058545 + 1.5 NA Intergenic Intergenic -322446 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 713.166-2 chr8 11589210 11589872 + 1.5 NA Intergenic Intergenic 13006 NR_040035 83655 Hs.742430 NR_040035 ENSG00000170983 LINC00208 C8orf14|NCRNA00208|VIR35 long intergenic non-protein coding RNA 208 ncRNA 231.667-29 chr7 82859403 82859852 + 1.5 NA intron (NM_033026, intron 10 of 24) L1MA1|LINE|L1 303257 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 210.833-22 chr5 13986743 13987113 + 1.5 NA Intergenic Intergenic -42448 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 231.667-19 chr3 188507292 188507639 + 1.5 NA intron (NM_001167672, intron 3 of 9) intron (NM_001167672, intron 3 of 9) 61201 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 323.333-3 chr1 99180985 99181344 + 1.5 NA Intergenic Intergenic -83128 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 168-20 chr15 45919498 45919705 + 1.5 NA intron (NR_135680, intron 2 of 4) intron (NR_135680, intron 2 of 4) 214406 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 192.167-25 chr3 100260795 100260971 + 1.5 NA promoter-TSS (NM_018309) promoter-TSS (NM_018309) -109 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 289-16 chr21 42316274 42316586 + 1.5 NA promoter-TSS (NM_003226) promoter-TSS (NM_003226) -834 NM_003226 7033 Hs.82961 NM_003226 ENSG00000160180 TFF3 ITF|P1B|TFI trefoil factor 3 protein-coding 368.833-7 chr8 81870005 81870333 + 1.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -27883 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 225.333-29 chr5 18693328 18693511 + 1.5 NA Intergenic L1M5|LINE|L1 886145 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 332-5 chr12 6961937 6962241 + 1.5 NA TTS (NM_080549) TTS (NM_080549) -1156 NR_135032 105369635 Hs.744442 NR_135032 ENSG00000257084 MIR200CHG U47924.27 MIR200C and MIR141 host gene ncRNA 229.333-22 chr20 45022475 45022702 + 1.5 NA intron (NM_001352385, intron 9 of 11) intron (NM_001352385, intron 9 of 11) 56076 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 197.5-11 chr14 50619527 50619708 + 1.5 NA intron (NM_015915, intron 8 of 13) intron (NM_015915, intron 8 of 13) 48689 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 274.167-20 chr8 80890230 80890427 + 1.5 NA Intergenic L2a|LINE|L2 -15547 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 383.666 chr11 93236482 93236952 + 1.5 NA Intergenic Intergenic -38726 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 395.166 chr14 54210729 54211179 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -185914 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 199-18 chr17 61428869 61429199 + 1.5 NA Intergenic Intergenic 17283 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 189-3 chr1 154305552 154305708 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -15463 NM_080429 89872 Hs.259048 NM_080429 ENSG00000143595 AQP10 AQPA_HUMAN aquaporin 10 protein-coding 279-30 chr7 4520589 4520953 + 1.5 NA Intergenic Intergenic -161524 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 358.5-6 chr12 116067082 116067348 + 1.5 NA intron (NM_015335, intron 4 of 30) intron (NM_015335, intron 4 of 30) 81439 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 238-36 chr8 84594184 84594478 + 1.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -111596 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 272-30 chr9 22030864 22031123 + 1.5 NA intron (NR_047532, intron 2 of 13) intron (NR_047532, intron 2 of 13) -21680 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 292.667-15 chr3 98954747 98955119 + 1.5 NA Intergenic Intergenic -53238 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 325-16 chr7 42639196 42639495 + 1.5 NA Intergenic L1MEf|LINE|L1 67102 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 165.5-11 chr12 25549035 25549419 + 1.5 NA intron (NM_001256266, intron 2 of 9) intron (NM_001256266, intron 2 of 9) 4056 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 388-12 chr4 128191457 128191952 + 1.5 NA intron (NR_146772, intron 14 of 19) L1MA4|LINE|L1 96109 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 291-18 chr3 119450865 119451215 + 1.5 NA intron (NM_018266, intron 4 of 8) intron (NM_018266, intron 4 of 8) 12575 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 344.833-2 chr11 75205141 75205522 + 1.5 NA 3' UTR (NM_001145212, exon 11 of 11) 3' UTR (NM_001145212, exon 11 of 11) -35443 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 251.667-27 chr3 182561413 182561679 + 1.5 NA Intergenic Intergenic -54422 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 253-5 chr10 81993920 81994146 + 1.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 116346 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 197-26 chr4 100948728 100948995 + 1.5 NA Intergenic Tigger20a|DNA|TcMar-Tigger -273748 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 224-45 chr8 72479177 72479455 + 1.5 NA Intergenic L1PA17|LINE|L1 -57909 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 223.167-12 chr2 168029043 168029413 + 1.5 NA intron (NM_013233, intron 14 of 17) L4_C_Mam|LINE|RTE-X -88084 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 388.833-2 chr4 60457870 60458343 + 1.5 NA Intergenic Intergenic -464513 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 199.833-16 chr17 11986959 11987218 + 1.5 NA intron (NM_001303282, intron 4 of 6) intron (NM_001303282, intron 4 of 6) 10284 NM_144680 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 269.5-9 chr14 23006956 23007299 + 1.5 NA intron (NM_001130706, intron 1 of 7) CpG 3016 NM_001130706 60686 Hs.255874 NM_021944 ENSG00000100802 C14orf93 RTFC chromosome 14 open reading frame 93 protein-coding 238 chr1 168347231 168347558 + 1.5 NA Intergenic Intergenic -28130 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 314-11 chr2 24841093 24841349 + 1.5 NA intron (NM_001320613, intron 6 of 21) intron (NM_001320613, intron 6 of 21) 47796 NM_001322101 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 243.833-16 chr21 29448756 29448966 + 1.5 NA Intergenic HAL1b|LINE|L1 -47186 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 229-14 chr20 39432872 39433196 + 1.5 NA Intergenic Intergenic -208286 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 241.667-7 chr11 30232108 30232417 + 1.5 NA intron (NM_000510, intron 2 of 2) intron (NM_000510, intron 2 of 2) 1248 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 198.833-28 chr6 145808665 145808811 + 1.5 NA intron (NM_001348092, intron 1 of 2) L2b|LINE|L2 6057 NM_001348092 84085 Hs.421095 NM_032145 ENSG00000118496 FBXO30 Fbx30 F-box protein 30 protein-coding 412.834-2 chr11 32515077 32515507 + 1.5 NA Intergenic Intergenic -68539 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 412-7 chr8 139576136 139576503 + 1.5 NA Intergenic L1MC3|LINE|L1 126804 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 295.334-10 chr6 41779890 41780432 + 1.5 NA promoter-TSS (NM_013397) promoter-TSS (NM_013397) -261 NM_006653 10817 Hs.194208 NM_006653 ENSG00000137218 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 287.833-15 chr8 84872439 84872712 + 1.5 NA intron (NM_001287244, intron 5 of 7) Charlie18a|DNA|hAT-Charlie 166648 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 221.833-2 chr1 153490396 153490735 + 1.5 NA Intergenic Intergenic -29914 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 297.667-18 chr20 13552249 13552794 + 1.5 NA intron (NM_001323602, intron 4 of 9) Tigger6a|DNA|TcMar-Tigger 86411 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 182.167-18 chr3 94052081 94052315 + 1.5 NA intron (NR_135621, intron 8 of 8) intron (NR_135621, intron 8 of 8) 10718 NM_001195643 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 327.501-2 chr3 125534540 125534923 + 1.5 NA intron (NM_022776, intron 11 of 12) MER58A|DNA|hAT-Charlie -14529 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 425.834-4 chr8 84907736 84908133 + 1.5 NA intron (NM_001287244, intron 7 of 7) MER113|DNA|hAT-Charlie -199304 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 309.167-14 chr5 132425749 132426031 + 1.5 NA intron (NR_161242, intron 2 of 3) intron (NR_161242, intron 2 of 3) 14961 NR_161242 441108 Hs.658288 NM_001013717 C5orf56 - chromosome 5 open reading frame 56 ncRNA 389-11 chr4 90268738 90269211 + 1.5 NA intron (NM_207491, intron 1 of 7) L1MA3|LINE|L1 33943 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 187.167-24 chr5 113869658 113869839 + 1.5 NA Intergenic Intergenic 356054 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 518.5-3 chr17 34638203 34638669 + 1.5 NA 3' UTR (NM_001304438, exon 9 of 9) 3' UTR (NM_001304438, exon 9 of 9) 57687 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 386.333-11 chr7 100101479 100101921 + 1.5 NA promoter-TSS (NM_004722) promoter-TSS (NM_004722) 52 NM_001363671 9179 Hs.632317 NM_004722 ENSG00000221838 AP4M1 CPSQ3|MU-4|MU-ARP2|SPG50 adaptor related protein complex 4 subunit mu 1 protein-coding 387.501 chr11 27015044 27015549 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 21184 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 312-15 chr2 162220008 162220381 + 1.5 NA intron (NM_004460, intron 6 of 25) MIR3|SINE|MIR 23251 NM_001291807 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 296-10 chr3 77858998 77859392 + 1.5 NA Intergenic Intergenic 189768 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 356-11 chr18 12629375 12629788 + 1.5 NA intron (NM_020148, intron 2 of 15) L1ME1|LINE|L1 27151 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 396.167-2 chr1 94467648 94468032 + 1.5 NA intron (NM_002858, intron 3 of 22) intron (NM_002858, intron 3 of 22) 49451 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 168.666-3 chr10 101387173 101387293 + 1.5 NA intron (NM_003939, intron 1 of 13) L1MA5A|LINE|L1 33068 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 219-24 chr3 71813269 71813466 + 1.5 NA Intergenic Intergenic -28219 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 412.333-2 chr1 183278981 183279475 + 1.5 NA intron (NM_170706, intron 7 of 10) intron (NM_170706, intron 7 of 10) 25646 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 290 chr1 199748264 199748600 + 1.5 NA Intergenic Intergenic -279278 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 303.667-13 chr6 137870873 137871326 + 1.5 NA intron (NM_001270508, intron 1 of 8) intron (NM_001270508, intron 1 of 8) -2866 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 WAKMAR2 lnc-TNFAIP3 wound and keratinocyte migration associated lncRNA 2 ncRNA 327.5-19 chr3 188708139 188708533 + 1.5 NA exon (NM_001167671, exon 7 of 11) exon (NM_001167671, exon 7 of 11) 19555 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 169.5-15 chr17 61680841 61681095 + 1.5 NA 3' UTR (NM_032043, exon 20 of 20) 3' UTR (NM_032043, exon 20 of 20) -89749 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 355.667-9 chr3 166837136 166837776 + 1.5 NA Intergenic MER21C|LTR|ERVL -61227 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 404.667-6 chr8 109419459 109420001 + 1.5 NA intron (NM_177531, intron 22 of 77) intron (NM_177531, intron 22 of 77) 57269 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 276-13 chr2 59275128 59275365 + 1.5 NA intron (NR_110219, intron 2 of 2) MIR|SINE|MIR 57538 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 315.667-8 chr14 43794039 43794383 + 1.5 NA Intergenic MIR|SINE|MIR 713072 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 438.833 chr2 135212315 135212873 + 1.5 NA intron (NM_001286569, intron 18 of 21) intron (NM_001286569, intron 18 of 21) 75966 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 278.334-10 chr5 37820713 37820926 + 1.5 NA intron (NM_199231, intron 2 of 2) intron (NM_199231, intron 2 of 2) 14003 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 329.166 chr1 22978435 22978878 + 1.5 NA Intergenic L2a|LINE|L2 -5790 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 267-31 chr9 98871042 98871355 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 63528 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 194.833-9 chr14 73669717 73670261 + 1.5 NA intron (NM_001201366, intron 5 of 8) (CA)n|Simple_repeat|Simple_repeat 25003 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 322.667-8 chr14 67462554 67462974 + 1.5 NA Intergenic Intergenic -20834 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 366.833-8 chrX 115893063 115893375 + 1.5 NA intron (NR_147172, intron 2 of 2) intron (NR_147172, intron 2 of 2) 52255 NR_147173 106029310 Hs.571742 NR_147172 DANT1 - DXZ4 associated non-coding transcript 1, proximal ncRNA 259-11 chr11 37464543 37464884 + 1.5 NA Intergenic L1MEd|LINE|L1 -473888 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 230.5-26 chr5 7076677 7076861 + 1.5 NA Intergenic Intergenic 192585 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 267-21 chr2 19721090 19721415 + 1.5 NA Intergenic MLT2D|LTR|ERVL -147602 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 317.667 chr11 11027837 11028310 + 1.5 NA Intergenic Intergenic 169856 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 167-3 chr1 79323386 79323634 + 1.5 NA Intergenic Intergenic -316780 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 239.167-20 chr20 35522574 35522774 + 1.5 NA non-coding (NR_026933, exon 7 of 11) non-coding (NR_026933, exon 7 of 11) 6978 NR_026933 140873 Hs.158680 NM_080828 ENSG00000125975 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 343.5-4 chr12 56481915 56482231 + 1.5 NA intron (NM_001280797, intron 1 of 16) AluSx1|SINE|Alu 6088 NM_013267 27165 Hs.212606 NM_013267 ENSG00000135423 GLS2 GA|GLS|LGA|hLGA glutaminase 2 protein-coding 325.167-9 chr2 137151221 137151670 + 1.5 NA intron (NM_001316349, intron 5 of 27) Tigger3b|DNA|TcMar-Tigger 385900 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 261-14 chr21 28185359 28185670 + 1.5 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 43153 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 407.501-3 chr2 12247854 12248254 + 1.5 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 48924 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 466.333-3 chr3 99395038 99395692 + 1.5 NA Intergenic Intergenic -243229 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 260-4 chr11 15941133 15941308 + 1.5 NA Intergenic Intergenic 28401 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 239-18 chr20 35169592 35169796 + 1.5 NA intron (NM_001355008, intron 4 of 14) L1ME3E|LINE|L1 -2378 NM_006404 10544 Hs.647450 NM_006404 ENSG00000101000 PROCR CCCA|CCD41|EPCR protein C receptor protein-coding 372.834-2 chr15 40190476 40190884 + 1.5 NA intron (NM_001211, intron 8 of 22) MER44C|DNA|TcMar-Tigger -26748 NM_001128629 106821730 Hs.732375 NM_001128628 ENSG00000259288 BUB1B-PAK6 PAK-5|PAK-6|PAK5|PAK6 BUB1B-PAK6 readthrough protein-coding 212.833-8 chr13 21297853 21298125 + 1.5 NA promoter-TSS (NR_038939) promoter-TSS (NR_038939) 102 NM_001365454 101928764 NM_001365454 LOC101928764 - coiled-coil domain-containing protein 144B protein-coding 291.333-17 chr6 136025395 136025594 + 1.5 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 47333 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 306-2 chr10 37584649 37584936 + 1.5 NA Intergenic L1MB8|LINE|L1 18139 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 166.333-7 chr1 173997785 173997931 + 1.5 NA Intergenic Intergenic -4786 NM_001300852 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 310.5-19 chr8 78407051 78407545 + 1.5 NA Intergenic Intergenic -109042 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 328.834-4 chr4 74311822 74312120 + 1.5 NA intron (NR_073114, intron 2 of 5) intron (NR_073114, intron 2 of 5) 3501 NM_001270992 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 311-13 chr3 49793831 49794187 + 1.5 NA intron (NM_001007540, intron 10 of 18) intron (NM_001007540, intron 10 of 18) 5864 NM_001007540 389118 Hs.363312 NM_001007540 ENSG00000187492 CDHR4 CDH29|PRO34300 cadherin related family member 4 protein-coding 242.334-7 chr3 52444889 52445128 + 1.5 NA promoter-TSS (NM_020163) promoter-TSS (NM_020163) 95 NM_020163 56920 Hs.59729 NM_020163 ENSG00000010319 SEMA3G sem2 semaphorin 3G protein-coding 200-14 chr14 67458324 67458493 + 1.5 NA Intergenic L2a|LINE|L2 -16478 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 472-2 chr10 74257243 74258037 + 1.5 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 80877 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 260.834 chr1 202292521 202292875 + 1.5 NA intron (NM_001017403, intron 6 of 17) intron (NM_001017403, intron 6 of 17) 49238 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 531.168 chr4 43782595 43783071 + 1.5 NA Intergenic Intergenic -234028 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 291.833-3 chr11 45847279 45847653 + 1.5 NA promoter-TSS (NM_021117) promoter-TSS (NM_021117) -9 NM_021117 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian regulator 2 protein-coding 383-5 chr20 39818116 39818690 + 1.5 NA Intergenic Intergenic -186058 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 397.167-4 chr7 26918417 26918890 + 1.5 NA Intergenic MIR|SINE|MIR -54063 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 265-5 chr16 66895184 66895390 + 1.5 NA Intergenic Intergenic 14772 NM_001329932 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 178.167-24 chr5 45468934 45469115 + 1.5 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 227356 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 364.667-20 chr7 104574407 104574674 + 1.5 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 229552 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 205-23 chr5 108338473 108338715 + 1.5 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 43504 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 514.667-8 chr5 54944398 54945100 + 1.5 NA Intergenic Intergenic 40844 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 177.833-20 chr2 99726376 99726557 + 1.5 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -236449 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 323.166-2 chr10 21293577 21294347 + 1.5 NA Intergenic Intergenic 78988 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 185.333-47 chr7 12578643 12578830 + 1.5 NA intron (NR_156701, intron 2 of 14) intron (NR_156701, intron 2 of 14) 8016 NR_156701 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 267.833-3 chr14 81520086 81520332 + 1.5 NA intron (NM_005065, intron 3 of 20) intron (NM_005065, intron 3 of 20) 13644 NM_005065 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 467.833-6 chr7 42014595 42015013 + 1.5 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 222405 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 173.833-8 chr10 82150128 82150326 + 1.5 NA intron (NR_163253, intron 2 of 10) MamRep38|DNA|hAT 82693 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 278-9 chr14 40425357 40425664 + 1.5 NA Intergenic THE1C|LTR|ERVL-MaLR -529201 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 295.167-5 chr11 104095553 104095917 + 1.5 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 59095 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 257.5-15 chr17 81329578 81329894 + 1.5 NA Intergenic Intergenic -20488 NR_038080 284185 Hs.631762 NM_178519 LINC00482 C17orf55 long intergenic non-protein coding RNA 482 ncRNA 178-18 chr2 6056421 6056574 + 1.5 NA Intergenic Intergenic 74519 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 316.333 chr1 156114260 156114555 + 1.5 NA promoter-TSS (NM_170708) promoter-TSS (NM_170708) -263 NM_005572 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 423.5-8 chr7 76020083 76020701 + 1.5 NA intron (NM_016086, intron 4 of 8) intron (NM_016086, intron 4 of 8) 10132 NR_134487 51657 Hs.11615 NM_016086 ENSG00000127952 STYXL1 DUSP24|MK-STYX|MKSTYX serine/threonine/tyrosine interacting like 1 protein-coding 184.667-41 chr5 111757823 111758018 + 1.5 NA promoter-TSS (NM_001142482) promoter-TSS (NM_001142482) 176 NM_001142477 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 355.833-2 chr12 53785831 53786181 + 1.5 NA Intergenic Intergenic -28972 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 198.833-14 chr17 55185469 55185711 + 1.5 NA Intergenic Intergenic -79370 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 346.167-12 chr7 80830021 80830462 + 1.5 NA intron (NM_006379, intron 2 of 17) MIR|SINE|MIR 88810 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 266.5-21 chr5 40220071 40220274 + 1.5 NA Intergenic Intergenic 167881 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 455.001-5 chr6 140049535 140050057 + 1.5 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -58535 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 235.167-19 chr21 18951603 18951861 + 1.5 NA Intergenic L1M4b|LINE|L1 -191920 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 288.667-6 chr14 56301350 56301809 + 1.5 NA TTS (NM_021255) TTS (NM_021255) 183168 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 239.167-34 chr9 24538524 24538760 + 1.5 NA Intergenic Intergenic 7034 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 208-28 chr22 46760685 46761062 + 1.5 NA Intergenic Intergenic -1744 NM_001284304 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 196.5-4 chr10 44751425 44751625 + 1.5 NA Intergenic L1MC1|LINE|L1 -159791 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 339.167-3 chr11 30484250 30484724 + 1.5 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 96006 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 630.499 chr1 245152653 245153405 + 1.5 NA Intergenic L1ME2|LINE|L1 -1956 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 351.667-3 chr10 74476563 74477162 + 1.5 NA intron (NM_001369124, intron 6 of 9) L1ME1|LINE|L1 52462 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 181.667-36 chr5 38023969 38024216 + 1.5 NA Intergenic L1ME4a|LINE|L1 -1605 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 299.167-17 chr4 55184005 55184303 + 1.5 NA Intergenic Intergenic -58559 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 418.167-3 chr8 8971298 8971589 + 1.5 NA Intergenic Intergenic -31454 NM_153332 90459 Hs.20000 NM_153332 ENSG00000104626 ERI1 3'HEXO|HEXO|THEX1 exoribonuclease 1 protein-coding 262.167-16 chr9 73528501 73528701 + 1.5 NA Intergenic L1ME3A|LINE|L1 376736 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 322.333-9 chr2 118233002 118233524 + 1.5 NA Intergenic Intergenic -46877 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 188.333-23 chr2 75524276 75524444 + 1.5 NA intron (NR_110281, intron 1 of 2) intron (NR_110281, intron 1 of 2) 292 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 340-22 chrX 48021719 48022087 + 1.5 NA Intergenic Intergenic 14162 NM_001079900 729201 Hs.319319 NM_001079900 ENSG00000171478 SPACA5B LYZL5B sperm acrosome associated 5B protein-coding 220.166-6 chr8 23745145 23745606 + 1.5 NA Intergenic Intergenic -38777 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 224.5-27 chr3 81173110 81173334 + 1.5 NA Intergenic Intergenic 179354 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 390.334-5 chr6 55963289 55963736 + 1.5 NA Intergenic MER65A|LTR|ERV1 -87922 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 176.5-9 chr14 85682126 85682350 + 1.5 NA Intergenic Intergenic 148889 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 200.667-12 chr12 127673208 127673358 + 1.5 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -17695 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 243.5-33 chr9 123081791 123082045 + 1.5 NA intron (NM_012197, intron 19 of 25) MIRc|SINE|MIR 29725 NR_030331 693185 NR_030331 ENSG00000283941 MIR600 MIRN600|hsa-mir-600 microRNA 600 ncRNA 166-21 chr13 59094472 59094686 + 1.5 NA Intergenic Intergenic -861462 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 234-9 chr11 60887833 60888016 + 1.5 NA Intergenic Intergenic 18661 NM_014502 27339 Hs.502705 NM_014502 ENSG00000110107 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 184.667-39 chr4 144710328 144710770 + 1.5 NA intron (NM_022475, intron 7 of 12) intron (NM_022475, intron 7 of 12) 64393 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 203.5-35 chr5 24620354 24620546 + 1.5 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 24528 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 508.333-3 chr19 51169272 51169926 + 1.5 NA intron (NR_047529, intron 4 of 6) LTR13|LTR|ERVK 2271 NR_047530 284367 Hs.132045 NR_002804 ENSG00000171101 SIGLEC17P HSPC078|SIGLECP2|SIGLECP3 sialic acid binding Ig like lectin 17, pseudogene pseudo 183.333-54 chr5 127205665 127205892 + 1.5 NA Intergenic Intergenic -84986 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 218.167-7 chr11 96564736 96564997 + 1.5 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 56441 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 187-11 chr12 111322578 111322766 + 1.5 NA intron (NM_015267, intron 18 of 21) intron (NM_015267, intron 18 of 21) 18530 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 351.333-10 chr4 45222012 45222482 + 1.5 NA Intergenic Intergenic -495613 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 241.333-5 chr11 36149817 36150122 + 1.5 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -72068 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 364.833-3 chr4 121421736 121422203 + 1.5 NA Intergenic Intergenic -40951 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 418-8 chr9 28526638 28527145 + 1.5 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 192414 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 233.667-34 chr8 27200409 27200564 + 1.5 NA Intergenic Intergenic 57918 NM_001283053 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 266.5-7 chr10 33520490 33520690 + 1.5 NA Intergenic MIR3|SINE|MIR -185685 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 248-16 chr14 49851870 49852106 + 1.5 NA intron (NM_001301732, intron 1 of 31) intron (NM_001301732, intron 1 of 31) 800 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 600.168 chrX 65034324 65035153 + 1.5 NA promoter-TSS (NM_001178032) promoter-TSS (NM_001178032) 3 NM_001243804 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 413.334-8 chr3 159764055 159764468 + 1.5 NA intron (NM_001197108, intron 1 of 6) CpG 4351 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 256-24 chr5 57693342 57693578 + 1.5 NA Intergenic Intergenic 42800 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 380.667-10 chr8 127194711 127195173 + 1.5 NA intron (NR_120364, intron 1 of 2) L1ME3Cz|LINE|L1 2685 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 201.833-17 chr5 168837676 168837848 + 1.5 NA intron (NM_003062, intron 6 of 35) MIRb|SINE|MIR -69507 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 500.667-2 chr22 25898697 25899156 + 1.5 NA intron (NM_001318245, intron 29 of 43) MIRb|SINE|MIR 156738 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 359.501 chr12 10479851 10480187 + 1.5 NA Intergenic L1MA8|LINE|L1 -25334 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 550.333-2 chr6 52423576 52424499 + 1.5 NA exon (NM_018100, exon 2 of 11) exon (NM_018100, exon 2 of 11) 3029 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 289-18 chr3 143950438 143950756 + 1.5 NA Intergenic Intergenic -21201 NM_001363944 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 238.167-11 chr14 73321576 73321804 + 1.5 NA intron (NM_001005743, intron 5 of 12) intron (NM_001005743, intron 5 of 12) -75689 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 165.5-28 chr2 135303367 135303611 + 1.5 NA intron (NM_001286569, intron 8 of 21) L1M2|LINE|L1 166861 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 406.833-3 chr14 59365532 59365879 + 1.5 NA intron (NM_001270520, intron 23 of 24) intron (NM_001270520, intron 23 of 24) 99675 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 251.833-2 chr10 12341222 12341485 + 1.5 NA Intergenic Intergenic -8194 NM_153498 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 174.667-55 chr8 51564789 51564948 + 1.5 NA intron (NM_144651, intron 3 of 22) L1MCa|LINE|L1 244577 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 277.5-16 chr5 3467976 3468260 + 1.5 NA intron (NR_033898, intron 2 of 4) L1ME1|LINE|L1 15302 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 291.5-25 chr3 101060014 101060230 + 1.5 NA Intergenic L1PBa|LINE|L1 -66632 NM_001349332 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 284.333-7 chr12 85571640 85571941 + 1.5 NA Intergenic Intergenic 264619 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 292-12 chr18 12388554 12388773 + 1.5 NA Intergenic L1MB7|LINE|L1 -11387 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 220.833-28 chr8 127494328 127494648 + 1.5 NA Intergenic Intergenic -12349 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 330.5-4 chr2 82264658 82264911 + 1.5 NA Intergenic Intergenic -592019 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 312.333-4 chr10 104336908 104337300 + 1.5 NA intron (NM_001272013, intron 1 of 1) intron (NM_001272013, intron 1 of 1) 1361 NM_001272013 85450 Hs.523252 NM_033397 ENSG00000148841 ITPRIP DANGER|KIAA1754|bA127L20|bA127L20.2 inositol 1,4,5-trisphosphate receptor interacting protein protein-coding 175.833-32 chr3 174254125 174254431 + 1.5 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -333482 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 202.333-6 chr10 4662813 4663338 + 1.5 NA TTS (NR_015425) TTS (NR_015425) 6919 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 273-8 chr14 50435843 50436069 + 1.5 NA intron (NM_198794, intron 25 of 31) intron (NM_198794, intron 25 of 31) -38658 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 287-11 chr17 35646912 35647349 + 1.5 NA intron (NM_001030006, intron 12 of 21) Charlie21a|DNA|hAT-Charlie 59808 NM_001030006 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 275.833-9 chr14 69809190 69809535 + 1.5 NA Intergenic Intergenic -2398 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 199.333-32 chr3 24631108 24631342 + 1.5 NA Intergenic L1MC3|LINE|L1 -135517 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 224.834-8 chr20 63980776 63981106 + 1.5 NA promoter-TSS (NM_012469) promoter-TSS (NM_012469) -191 NM_012469 24148 Hs.31334 NM_012469 ENSG00000101161 PRPF6 ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6 pre-mRNA processing factor 6 protein-coding 265.167-2 chr11 96829658 96830013 + 1.5 NA Intergenic MamRep1879|DNA|hAT-Tip100? 321410 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 291.833-13 chr7 3692985 3693286 + 1.5 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 391883 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 209-34 chr7 54395450 54395648 + 1.5 NA Intergenic Intergenic 64852 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 255.667-10 chr3 181209390 181209653 + 1.5 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -22216 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 308.667-10 chr3 27194765 27195012 + 1.5 NA intron (NM_001304384, intron 4 of 16) intron (NM_001304384, intron 4 of 16) 21635 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 309.834-7 chr2 104583343 104583740 + 1.5 NA Intergenic Intergenic -73032 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 229.666-4 chr12 66708831 66709083 + 1.5 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) -29881 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 444.833 chr12 80270546 80270918 + 1.5 NA intron (NM_001368062, intron 28 of 62) intron (NM_001368062, intron 28 of 62) 61279 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 369 chr1 175825278 175825587 + 1.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -51911 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 447.501 chr7 116293408 116294025 + 1.5 NA Intergenic L1MA3|LINE|L1 -6989 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 264-27 chr5 132318728 132318997 + 1.5 NA intron (NM_003059, intron 3 of 9) intron (NM_003059, intron 3 of 9) 24468 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 225.5-16 chr20 57380986 57381220 + 1.5 NA Intergenic Intergenic -10293 NM_017495 55544 Hs.236361 NM_017495 ENSG00000132819 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 247.5-9 chr13 91545046 91545264 + 1.5 NA intron (NM_004466, intron 2 of 7) MLT1F1|LTR|ERVL-MaLR 146534 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 180-46 chr4 47819285 47819512 + 1.5 NA intron (NM_006587, intron 1 of 21) intron (NM_006587, intron 1 of 21) -11947 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 234.667-11 chr14 36276951 36277142 + 1.5 NA Intergenic Intergenic 43591 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 514.5-3 chr3 98588142 98588710 + 1.5 NA intron (NM_000097, intron 4 of 6) intron (NM_000097, intron 4 of 6) 5185 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 274.167-7 chr13 100695230 100695591 + 1.5 NA Intergenic MER66-int|LTR|ERV1 -12915 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 188.667-43 chr6 28125726 28125990 + 1.5 NA intron (NM_001320558, intron 2 of 2) L3|LINE|CR1 1249 NM_001320557 80345 Hs.656641 NM_025231 ENSG00000196812 ZSCAN16 ZNF392|ZNF435|dJ265C24.3 zinc finger and SCAN domain containing 16 protein-coding 259.167-7 chr3 56302304 56302559 + 1.5 NA intron (NR_132749, intron 2 of 17) intron (NR_132749, intron 2 of 17) 166036 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 229.5-17 chr2 51138007 51138173 + 1.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 105489 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 326.834-2 chr15 85619417 85619796 + 1.5 NA promoter-TSS (NM_001270546) promoter-TSS (NM_001270546) -344 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 215.333-24 chr2 10615023 10615225 + 1.5 NA intron (NR_048552, intron 12 of 19) UCON9|Unknown|Unknown 74851 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 311.667-15 chr3 55519332 55519632 + 1.5 NA intron (NM_015576, intron 16 of 16) intron (NM_015576, intron 16 of 16) -31840 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 186.5-20 chr3 20069023 20069211 + 1.5 NA intron (NM_003884, intron 1 of 17) MER34A1|LTR|ERV1 28671 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 174-14 chr12 126622054 126622279 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 68152 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 194.834-9 chr21 32319462 32319711 + 1.5 NA intron (NM_014825, intron 35 of 38) MamRep1879|DNA|hAT-Tip100? 27773 NM_178817 56246 Hs.584940 NM_178817 ENSG00000170262 MRAP B27|C21orf61|FALP|FGD2|GCCD2 melanocortin 2 receptor accessory protein protein-coding 405.833-4 chr2 218849603 218850083 + 1.5 NA Intergenic Intergenic -9962 NM_006522 7475 Hs.29764 NM_006522 ENSG00000115596 WNT6 - Wnt family member 6 protein-coding 205-31 chr9 28031586 28031854 + 1.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -457854 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 266-3 chr10 15710024 15710281 + 1.5 NA intron (NM_001291494, intron 2 of 28) intron (NM_001291494, intron 2 of 28) 9770 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 180-64 chr9 121242147 121242380 + 1.5 NA intron (NM_001353053, intron 6 of 25) intron (NM_001353053, intron 6 of 25) -25899 NM_001353072 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 331.167-16 chr7 92573435 92573782 + 1.5 NA intron (NM_152789, intron 8 of 10) intron (NM_152789, intron 8 of 10) 16441 NM_001288584 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 323.834 chr1 167060375 167060728 + 1.5 NA intron (NM_005814, intron 4 of 6) intron (NM_005814, intron 4 of 6) 29826 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 270.834 chr10 63128758 63129082 + 1.5 NA Intergenic AluSx1|SINE|Alu -4327 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 402.833-2 chr3 58330130 58330480 + 1.5 NA Intergenic AluJb|SINE|Alu -2585 NM_001349520 54899 Hs.190544 NM_017771 ENSG00000168297 PXK MONAKA|SLOB PX domain containing serine/threonine kinase like protein-coding 190.167-10 chr2 123042992 123043240 + 1.5 NA Intergenic Intergenic 30365 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 554.834 chr12 32657514 32658020 + 1.5 NA Intergenic MamTip3|DNA|hAT-Tip100 -21433 NM_012063 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 353-14 chr8 82676031 82676523 + 1.5 NA Intergenic L1PA13|LINE|L1 -235827 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 528.833 chr11 73242280 73243037 + 1.5 NA TTS (NM_002564) TTS (NM_002564) -21847 NM_001277205 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 262-12 chr2 40435099 40435770 + 1.5 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -5130 NM_021097 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 345.5-11 chr2 23524575 23524835 + 1.5 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 139526 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 185.667-48 chr9 69710438 69710601 + 1.5 NA non-coding (NR_159515, exon 7 of 7) non-coding (NR_159515, exon 7 of 7) -38148 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 354.333-12 chrX 65528704 65529138 + 1.5 NA intron (NM_001170650, intron 5 of 11) intron (NM_001170650, intron 5 of 11) 5885 NM_031206 81887 Hs.522675 NM_031206 ENSG00000001497 LAS1L Las1-like|WTS|dJ475B7.2 LAS1 like, ribosome biogenesis factor protein-coding 355-5 chr2 44280668 44280991 + 1.5 NA exon (NM_000341, exon 2 of 10) exon (NM_000341, exon 2 of 10) 5349 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 204.5-30 chr5 147763630 147763816 + 1.5 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 19005 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 307.5-17 chr2 44743459 44743780 + 1.5 NA intron (NM_024766, intron 7 of 10) intron (NM_024766, intron 7 of 10) 195269 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 656.668 chr8 131814294 131815035 + 1.5 NA Intergenic L3|LINE|CR1 -89429 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 353.833-3 chr1 178184576 178184957 + 1.5 NA intron (NM_170692, intron 1 of 17) L1MC3|LINE|L1 90662 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 253.5-32 chr7 89294604 89294858 + 1.5 NA intron (NM_181646, intron 2 of 3) HAL1ME|LINE|L1 -498994 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 269.5-16 chr3 133043662 133043928 + 1.5 NA intron (NM_023943, intron 1 of 5) Tigger20a|DNA|TcMar-Tigger 5507 NM_023943 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 297-5 chr12 85854002 85854303 + 1.5 NA Intergenic L1ME2z|LINE|L1 -17743 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 206.5-16 chr15 44579978 44580235 + 1.5 NA intron (NM_025137, intron 30 of 39) Tigger3c|DNA|TcMar-Tigger 42959 NM_003758 8669 Hs.404056 NM_003758 ENSG00000104131 EIF3J EIF3S1|eIF3-alpha|eIF3-p35 eukaryotic translation initiation factor 3 subunit J protein-coding 220.167-20 chr2 69828003 69828209 + 1.5 NA TTS (NM_001320702) TTS (NM_001320702) -1554 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 296-19 chr9 92221564 92221943 + 1.5 NA intron (NR_073446, intron 32 of 32) intron (NR_073446, intron 32 of 32) -30597 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 213.333-17 chr2 152825673 152825880 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 107139 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 400.334-5 chr2 115651181 115651810 + 1.5 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 307680 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 276.667 chr1 31497941 31498201 + 1.5 NA Intergenic Intergenic -2014 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LDC1P LINC01225 leucine decarboxylase 1, pseudogene pseudo 213-18 chr14 79223306 79223521 + 1.5 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 23431 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 384-2 chr10 82920455 82920874 + 1.5 NA intron (NR_163253, intron 6 of 10) L1MC3|LINE|L1 -687744 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 321.167-6 chr12 30838500 30838860 + 1.5 NA Intergenic Intergenic 42999 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 199.5-19 chr16 80583389 80583655 + 1.5 NA Intergenic Intergenic -10714 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 204.333-21 chr2 174906209 174906390 + 1.5 NA intron (NM_001025201, intron 6 of 12) L1MB8|LINE|L1 -58681 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 290.834 chr12 23311463 23311715 + 1.5 NA Intergenic L1ME1|LINE|L1 135953 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 645.001 chr10 97292248 97293323 + 1.5 NA promoter-TSS (NR_037909) promoter-TSS (NR_037909) -112 NR_037909 100533184 Hs.80305 NR_037909 ENSG00000269891 ARHGAP19-SLIT1 ARHGAP19 ARHGAP19-SLIT1 readthrough (NMD candidate) ncRNA 225.834-8 chr12 5826476 5826707 + 1.5 NA intron (NM_001278596, intron 7 of 25) intron (NM_001278596, intron 7 of 25) 118668 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 175-12 chr11 115731276 115731455 + 1.5 NA TTS (NR_135066) TTS (NR_135066) 3397 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 182.167-22 chr4 34515249 34515503 + 1.5 NA Intergenic LTR8|LTR|ERV1 -245629 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 400.167-6 chr7 50584939 50585216 + 1.5 NA Intergenic Intergenic -19672 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 250.834-5 chr2 132377272 132377527 + 1.5 NA Intergenic LOR1-int|LTR|ERV1 24732 NR_135203 339742 Hs.98178 NR_135203 FAM201B - family with sequence similarity 201 member B ncRNA 441.5-4 chr2 17171241 17171651 + 1.5 NA Intergenic Intergenic 346994 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 387.167-9 chr9 29433388 29433690 + 1.5 NA Intergenic L1MA1|LINE|L1 -219938 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 188.5-14 chr12 112087805 112087995 + 1.5 NA intron (NM_024953, intron 3 of 23) intron (NM_024953, intron 3 of 23) 20883 NM_024953 80018 Hs.530941 NM_024953 ENSG00000111300 NAA25 C12orf30|MDM20|NAP1 N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding 604.667-4 chr8 114579209 114579730 + 1.5 NA Intergenic MIR|SINE|MIR 1088544 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 212.833-23 chr6 159941828 159942067 + 1.5 NA Intergenic Intergenic -27152 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 192.333-16 chr13 73056206 73056386 + 1.5 NA intron (NM_001286818, intron 1 of 3) intron (NM_001286818, intron 1 of 3) 1320 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 246-13 chr15 68282500 68282698 + 1.5 NA intron (NM_015322, intron 1 of 1) intron (NM_015322, intron 1 of 1) 4854 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 201.167-22 chr3 58867983 58868160 + 1.5 NA intron (NM_001351530, intron 8 of 15) intron (NM_001351530, intron 8 of 15) 43600 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 205.833-10 chr14 60371450 60371705 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 48381 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 320.833-3 chr2 46591847 46592151 + 1.5 NA intron (NM_173074, intron 5 of 6) intron (NM_173074, intron 5 of 6) -11761 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 191.5-32 chr22 45549326 45549611 + 1.5 NA intron (NM_006487, intron 13 of 14) intron (NM_006487, intron 13 of 14) 46585 NM_006485 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 371.167-4 chr18 70206508 70206810 + 1.5 NA promoter-TSS (NM_173630) promoter-TSS (NM_173630) -972 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 204-10 chr11 84298031 84298304 + 1.5 NA intron (NM_001142699, intron 7 of 27) L2a|LINE|L2 19172 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 350-10 chr16 60424293 60424711 + 1.5 NA Intergenic Intergenic -64709 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 269.333-2 chr10 52108189 52108444 + 1.5 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 205812 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 238.333-30 chr4 39318533 39318898 + 1.5 NA intron (NM_001204747, intron 9 of 24) intron (NM_001204747, intron 9 of 24) 47647 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 281.667 chr1 17441509 17441914 + 1.5 NA Intergenic Intergenic -2034 NM_018715 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 206.5-46 chr5 96949988 96950353 + 1.5 NA intron (NM_005575, intron 1 of 17) intron (NM_005575, intron 1 of 17) -8263 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 358.167-7 chr2 207394654 207395081 + 1.5 NA Intergenic LTR44|LTR|ERV1 -125443 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 269.5-15 chr3 110868996 110869297 + 1.5 NA Intergenic HERVL40-int|LTR|ERVL 200813 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 249.333-24 chr4 163629584 163629854 + 1.5 NA intron (NM_001166373, intron 4 of 7) L1PA7|LINE|L1 -16185 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 441.5-3 chr16 59773107 59773601 + 1.5 NA Intergenic L1MA9|LINE|L1 -18163 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 285-5 chr12 83963429 83963653 + 1.5 NA Intergenic Intergenic 949258 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 242.167-7 chr15 25367816 25368066 + 1.5 NA intron (NM_001354542, intron 5 of 11) MIR3|SINE|MIR 70288 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 409.5-3 chr15 80760569 80760865 + 1.5 NA Intergenic L1ME4c|LINE|L1 -18653 NM_018689 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 351.333-8 chr20 4592827 4593173 + 1.5 NA Intergenic Intergenic -93456 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 201.5-32 chr6 123396635 123396834 + 1.5 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -42870 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 486.833-4 chr3 21484541 21484993 + 1.5 NA intron (NM_024697, intron 4 of 7) L1MDa|LINE|L1 -58022 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 178.5-40 chrX 17591111 17591378 + 1.5 NA intron (NM_198270, intron 1 of 7) intron (NM_198270, intron 1 of 7) -32117 NR_046632 100873920 Hs.584577 NR_046632 NHS-AS1 - NHS antisense RNA 1 ncRNA 348.667-12 chr6 49772473 49772904 + 1.5 NA Intergenic Intergenic 14597 NM_138733 5232 Hs.367727 NM_138733 ENSG00000170950 PGK2 HEL-S-272|PGKB|PGKPS|dJ417L20.2 phosphoglycerate kinase 2 protein-coding 289.167-13 chr3 66734038 66734309 + 1.5 NA intron (NR_135533, intron 1 of 2) MER3|DNA|hAT-Charlie 4163 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 230.333-31 chr8 24511472 24511756 + 1.5 NA intron (NR_125809, intron 3 of 4) intron (NR_125809, intron 3 of 4) 3254 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 184.333-14 chr14 68216148 68216352 + 1.5 NA intron (NM_133509, intron 7 of 10) MIRb|SINE|MIR 392658 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 232-42 chr8 130551228 130551509 + 1.5 NA Intergenic L1MA4|LINE|L1 -107694 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 305.833-8 chr17 69085207 69085659 + 1.5 NA intron (NM_080284, intron 31 of 38) intron (NM_080284, intron 31 of 38) -14109 NR_049834 100847008 NR_049834 ENSG00000265331 MIR4524B - microRNA 4524b ncRNA 411.5-4 chr6 110180099 110180427 + 1.5 NA promoter-TSS (NM_015891) promoter-TSS (NM_015891) -164 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 398.666 chr18 76804891 76805246 + 1.5 NA intron (NR_040024, intron 2 of 2) intron (NR_040024, intron 2 of 2) 17227 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 241.833-2 chr11 38592439 38592740 + 1.5 NA Intergenic Intergenic 53767 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 251.333-23 chr6 39532550 39532751 + 1.5 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -101260 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 452.5-3 chr2 204825230 204825869 + 1.5 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 280074 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 237-29 chr4 38752976 38753378 + 1.5 NA Intergenic Intergenic 29813 NM_030956 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 186.5-16 chr2 178791146 178791409 + 1.5 NA intron (NM_133379, intron 10 of 45) intron (NM_133379, intron 10 of 45) 14351 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 231.667-4 chr12 20443770 20444013 + 1.5 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 74646 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 203-36 chr9 76649727 76649920 + 1.5 NA intron (NM_001308051, intron 3 of 8) intron (NM_001308051, intron 3 of 8) 42592 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 239.167-18 chr2 43540877 43541079 + 1.5 NA intron (NM_001083953, intron 21 of 37) intron (NM_001083953, intron 21 of 37) 54996 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 486.5-6 chr17 79811171 79811937 + 1.5 NA Intergenic CpG -11898 NR_146504 105371919 NR_146504 ENSG00000262772 LINC01977 - long intergenic non-protein coding RNA 1977 ncRNA 262.667-19 chr2 96574323 96574536 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger 36550 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 367.666-7 chr8 113198252 113198735 + 1.5 NA intron (NM_001363185, intron 3 of 66) MIRc|SINE|MIR 178659 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 282.666-6 chr4 30931859 30932295 + 1.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) 211708 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 208-18 chr18 3843985 3844204 + 1.5 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 1264 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 314.5-6 chr11 104936875 104937224 + 1.5 NA Intergenic L1MA2|LINE|L1 -18874 NR_034079 643733 Hs.713751 NR_034078 ENSG00000235505 CASP17P - caspase 17, pseudogene pseudo 208-36 chr5 156931183 156931428 + 1.5 NA intron (NM_001146726, intron 4 of 7) MLT1D|LTR|ERVL-MaLR 31921 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 248-25 chr21 20311665 20311869 + 1.5 NA Intergenic Intergenic -53082 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 261.5-15 chr15 41266889 41267207 + 1.5 NA intron (NM_007236, intron 4 of 6) L1MB3|LINE|L1 -16942 NR_026757 729082 Hs.380164 NR_026757 ENSG00000247556 OIP5-AS1 cyrano|linc-OIP5 OIP5 antisense RNA 1 ncRNA 206.167-12 chr2 549737 550113 + 1.5 NA Intergenic Intergenic 4120 NR_146470 101927362 Hs.385749 NR_146470 ENSG00000225942 LINC01875 - long intergenic non-protein coding RNA 1875 ncRNA 204-11 chr12 10753219 10753766 + 1.5 NA intron (NR_120463, intron 1 of 6) HAL1ME|LINE|L1 3258 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 281-7 chr13 44471479 44471933 + 1.5 NA intron (NM_183422, intron 1 of 2) intron (NM_183422, intron 1 of 2) 2595 NM_001243798 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 285.5-30 chr8 48760826 48761150 + 1.5 NA Intergenic L1MDa|LINE|L1 -25677 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 325.333-4 chr14 60294481 60295068 + 1.5 NA 3' UTR (NM_177952, exon 6 of 6) 3' UTR (NM_177952, exon 6 of 6) -28422 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 314-12 chr20 59751226 59751757 + 1.5 NA intron (NM_080672, intron 3 of 12) intron (NM_080672, intron 3 of 12) 30281 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 300.5-8 chr14 70593255 70593613 + 1.5 NA intron (NM_005466, intron 3 of 7) intron (NM_005466, intron 3 of 7) 7256 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 331.5 chr1 209267208 209267465 + 1.5 NA Intergenic L3|LINE|CR1 -58120 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 338.833-5 chr8 138372424 138372806 + 1.5 NA intron (NM_001362965, intron 1 of 19) MIR|SINE|MIR 124646 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 190.5-8 chr12 33082837 33083027 + 1.5 NA Intergenic Intergenic -186086 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 461.333-2 chr7 3739332 3739921 + 1.5 NA intron (NM_152744, intron 4 of 44) L1MA9|LINE|L1 -390059 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 320.5-16 chr8 56833160 56833376 + 1.5 NA Intergenic Intergenic 160599 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 381.833-2 chr10 86887451 86887884 + 1.5 NA intron (NM_004329, intron 3 of 12) MIRc|SINE|MIR -68092 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 910.333 chr2 127024855 127026196 + 1.5 NA Intergenic CpG 56540 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 335.167 chr1 41849003 41849477 + 1.5 NA intron (NR_038261, intron 2 of 3) intron (NR_038261, intron 2 of 3) 69682 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 338.5-13 chr8 65291921 65292318 + 1.5 NA Intergenic L1ME3D|LINE|L1 -111779 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 255.833-15 chr3 15590379 15590621 + 1.5 NA intron (NM_001284413, intron 3 of 15) intron (NM_001284413, intron 3 of 15) -10852 NM_001281723 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 238-10 chr14 62017214 62017592 + 1.5 NA intron (NM_001367661, intron 4 of 8) L2a|LINE|L2 89708 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 247.667-32 chr6 13614934 13615309 + 1.5 NA promoter-TSS (NM_001317724) promoter-TSS (NM_001317724) -206 NM_001317724 51406 Hs.306242 NM_016167 ENSG00000225921 NOL7 C6orf90|PQBP3|RARG-1|dJ223E5.2 nucleolar protein 7 protein-coding 373-10 chr5 51126817 51127109 + 1.5 NA Intergenic Intergenic -156776 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 259.5-5 chr11 31447258 31447574 + 1.5 NA intron (NM_001304274, intron 4 of 5) intron (NM_001304274, intron 4 of 5) 62206 NM_001304274 196294 Hs.502223 NM_144981 ENSG00000148950 IMMP1L IMMP1|IMP1|IMP1-LIKE inner mitochondrial membrane peptidase subunit 1 protein-coding 203.333-22 chr14 59479989 59480197 + 1.5 NA intron (NM_144581, intron 1 of 4) MamGypLTR1c|LTR|Gypsy 3482 NM_001331159 112849 Hs.729061 NM_144581 ENSG00000126790 L3HYPDH C14orf149 trans-L-3-hydroxyproline dehydratase protein-coding 242.667-21 chr22 35068951 35069189 + 1.5 NA intron (NM_001303508, intron 2 of 4) intron (NM_001303508, intron 2 of 4) 2912 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 163.5-25 chr2 117589151 117589301 + 1.5 NA Intergenic L2|LINE|L2 -225465 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 548.666 chr3 103780936 103781420 + 1.5 NA Intergenic Intergenic -257062 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 382-8 chr3 82134347 82135125 + 1.5 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 148594 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 294-9 chr18 64123067 64123347 + 1.5 NA intron (NR_033881, intron 1 of 9) L1PB4|LINE|L1 19116 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 309.834-5 chr18 12852756 12853128 + 1.5 NA intron (NM_080423, intron 2 of 8) intron (NM_080423, intron 2 of 8) -11980 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 269-13 chr19 29607542 29607777 + 1.5 NA intron (NR_027368, intron 1 of 5) intron (NR_027368, intron 1 of 5) 1376 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 346.834-4 chrX 63185966 63186764 + 1.5 NA Intergenic MER41B|LTR|ERV1 164967 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 234.833-3 chr1 113242001 113242196 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -35845 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 170.667-18 chr18 852629 852923 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -40534 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 220.5-27 chr2 235542518 235542709 + 1.5 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -24692 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 265.5-3 chr10 76294318 76294572 + 1.5 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 511684 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 323-13 chr2 38013306 38013586 + 1.5 NA intron (NM_144713, intron 10 of 10) intron (NM_144713, intron 10 of 10) 22895 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 188.5-10 chr11 45136051 45136309 + 1.5 NA intron (NM_001359633, intron 2 of 7) L1MC3|LINE|L1 -11163 NM_001256695 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 243.667-3 chr10 57479165 57479403 + 1.5 NA Intergenic L2a|LINE|L2 -174725 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 347.5-9 chr2 158572225 158572481 + 1.5 NA intron (NM_001005476, intron 2 of 20) intron (NM_001005476, intron 2 of 20) 115401 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 299-11 chr2 122451247 122451656 + 1.5 NA Intergenic L1PA17|LINE|L1 622030 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 382.001-2 chr3 28991824 28992117 + 1.5 NA Intergenic L1ME2|LINE|L1 288969 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 243-2 chr10 62247445 62247842 + 1.5 NA intron (NM_001282941, intron 2 of 4) intron (NM_001282941, intron 2 of 4) 21201 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 229.167-22 chr9 14663368 14663633 + 1.5 NA intron (NR_148717, intron 6 of 11) (TT)n|Simple_repeat|Simple_repeat 29932 NR_148717 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 199-29 chr21 33156503 33156648 + 1.5 NA Intergenic Intergenic 13661 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 342.833-19 chr9 14096679 14097296 + 1.5 NA intron (NR_161384, intron 7 of 7) intron (NR_161384, intron 7 of 7) 83815 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 324.667-4 chr12 13661930 13662510 + 1.5 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -285475 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 328.5-7 chr7 88349851 88350160 + 1.5 NA Intergenic Intergenic -43111 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 317.333-13 chr6 11143948 11144487 + 1.5 NA Intergenic Intergenic -32492 NM_207582 405754 Hs.631996 NM_207582 ENSG00000244476 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD member 1, envelope protein-coding 301-4 chr11 59206542 59206757 + 1.5 NA 3' UTR (NM_001300727, exon 9 of 9) 3' UTR (NM_001300727, exon 9 of 9) 6278 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 166.5-3 chr10 18011835 18011965 + 1.5 NA intron (NM_001282734, intron 11 of 11) intron (NM_001282734, intron 11 of 11) -1338 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 274-24 chr4 154588124 154588473 + 1.5 NA intron (NM_021871, intron 3 of 4) intron (NM_021871, intron 3 of 4) 2444 NM_000508 2243 Hs.351593 NM_000508 ENSG00000171560 FGA Fib2 fibrinogen alpha chain protein-coding 230.667-5 chr11 78008347 78008662 + 1.5 NA Intergenic L1MEc|LINE|L1 -13836 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 371.666-2 chr2 77249196 77249504 + 1.5 NA intron (NR_146416, intron 1 of 1) AluSq2|SINE|Alu 263385 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 200.833-21 chr2 108193300 108193569 + 1.5 NA intron (NR_131251, intron 1 of 4) L1ME3A|LINE|L1 24407 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 287.167-13 chr5 172870259 172870585 + 1.5 NA intron (NM_001031711, intron 1 of 9) intron (NM_001031711, intron 1 of 9) 36171 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 AMCN|ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 262.167 chr10 31255295 31255535 + 1.5 NA intron (NR_134478, intron 1 of 2) L1ME3Cz|LINE|L1 -63002 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 251.333-10 chr13 33931382 33931664 + 1.5 NA intron (NM_181558, intron 8 of 8) LTR89|LTR|ERVL? 113374 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 307.5-24 chr8 119566950 119567408 + 1.5 NA intron (NM_001330600, intron 23 of 25) intron (NM_001330600, intron 23 of 25) 25829 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 330.667-2 chr1 164743123 164743462 + 1.5 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 31349 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 164.5-27 chr2 75102911 75103188 + 1.5 NA intron (NM_015727, intron 2 of 3) Charlie1a|DNA|hAT-Charlie 12237 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 495.167-2 chr5 98772342 98773092 + 1.5 NA promoter-TSS (NM_001366508) promoter-TSS (NM_001366508) 367 NR_033932 503569 Hs.586188 NR_033932 ENSG00000246763 RGMB-AS1 - RGMB antisense RNA 1 ncRNA 410-2 chr11 58557626 58558124 + 1.5 NA intron (NM_001307951, intron 2 of 7) intron (NM_001307951, intron 2 of 7) 18042 NM_004811 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 351.5-8 chr19 4927433 4927830 + 1.5 NA intron (NM_001290051, intron 2 of 16) intron (NM_001290051, intron 2 of 16) -5056 NR_039902 100616337 NR_039902 ENSG00000263409 MIR4747 mir-4747 microRNA 4747 ncRNA 211-9 chr11 77748443 77748704 + 1.5 NA intron (NM_016578, intron 2 of 15) intron (NM_016578, intron 2 of 15) 72261 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 189-54 chr8 89184067 89184241 + 1.5 NA Intergenic Intergenic 573557 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 187.167-18 chr2 64270260 64270497 + 1.5 NA Intergenic LTR88a|LTR|Gypsy? 41977 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 172-14 chr14 50456894 50457124 + 1.5 NA intron (NM_198794, intron 13 of 31) L2c|LINE|L2 -59711 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 276.167-2 chr1 116165189 116165376 + 1.5 NA Intergenic MIR|SINE|MIR 53527 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 243.667-30 chr20 54927746 54928105 + 1.5 NA Intergenic Intergenic 452332 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 270.5-9 chr12 124989183 124989466 + 1.5 NA promoter-TSS (NM_032656) promoter-TSS (NM_032656) -193 NM_032656 57647 Hs.107382 NM_032656 ENSG00000150990 DHX37 DDX37|Dhr1 DEAH-box helicase 37 protein-coding 199-54 chr8 84601763 84602098 + 1.5 NA intron (NM_001354308, intron 3 of 9) L2|LINE|L2 -103997 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 273.5-9 chr16 6074986 6075224 + 1.5 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 55402 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 307.5-20 chr21 16905579 16906008 + 1.5 NA Intergenic L1MA4A|LINE|L1 315556 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 255.333-6 chr1 166650296 166650538 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 46501 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 508.833-5 chr5 88724435 88724967 + 1.5 NA intron (NM_001131005, intron 10 of 10) intron (NM_001131005, intron 10 of 10) -33660 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 232.333-3 chr11 83220789 83220953 + 1.5 NA intron (NM_001300975, intron 5 of 10) L1M3f|LINE|L1 27159 NM_182603 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 246.167-31 chr6 20564102 20564322 + 1.5 NA intron (NM_017774, intron 4 of 15) FLAM_C|SINE|Alu 29755 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 397.333 chr1 13960532 13961012 + 1.5 NA Intergenic Intergenic 211357 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 215.833-22 chr7 42233532 42233818 + 1.5 NA intron (NM_000168, intron 1 of 14) intron (NM_000168, intron 1 of 14) 3534 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 506.5-2 chr12 124938001 124938541 + 1.5 NA Intergenic HERVIP10FH-int|LTR|ERV1 22724 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 169.333-32 chr2 109467022 109467194 + 1.5 NA intron (NM_001099289, intron 8 of 9) L1ME1|LINE|L1 146559 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 256-14 chr18 13064004 13064231 + 1.5 NA intron (NM_032142, intron 21 of 44) AluSg|SINE|Alu 72755 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 425.5-5 chr14 20314581 20314887 + 1.5 NA intron (NM_182849, intron 4 of 5) L1MC|LINE|L1 8592 NR_145735 109616976 Hs.742613 NR_145735 ENSG00000222489 SNORA79B - small nucleolar RNA, H/ACA box 79B snoRNA 350.167-12 chr8 125716755 125716989 + 1.5 NA Intergenic L1MEd|LINE|L1 234325 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 314.167-2 chr10 46257936 46258268 + 1.5 NA intron (NR_103828, intron 1 of 2) L1PB|LINE|L1 11506 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 302.166-2 chr6 156410846 156411183 + 1.5 NA Intergenic MLT2B2|LTR|ERVL 32264 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 306.5-6 chr12 41708153 41708422 + 1.5 NA Intergenic AluJr|SINE|Alu -55902 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 193.5-18 chr16 46781468 46781673 + 1.5 NA Intergenic MIRb|SINE|MIR -18324 NM_001308301 91807 Hs.130465 NM_182493 ENSG00000140795 MYLK3 MLCK|MLCK2|caMLCK myosin light chain kinase 3 protein-coding 188.333-25 chr2 169303055 169303490 + 1.5 NA intron (NM_004525, intron 4 of 78) intron (NM_004525, intron 4 of 78) 59262 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 188-19 chr17 70561424 70561674 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie 392014 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 223.5-30 chr8 132503688 132503951 + 1.5 NA Intergenic L1ME3|LINE|L1 -22724 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 438.667 chr10 51481769 51482343 + 1.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 182483 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 354.667-9 chr3 76651216 76651619 + 1.5 NA Intergenic L2c|LINE|L2 -388682 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 232-21 chr2 57186355 57186606 + 1.5 NA Intergenic L1PA16|LINE|L1 -721171 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 313.334-2 chr10 25015156 25015576 + 1.5 NA intron (NM_145010, intron 1 of 5) MIR3|SINE|MIR 792 NR_072992 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 314.333-3 chr12 125460560 125460964 + 1.5 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 134146 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 251.5-8 chr14 69670817 69671013 + 1.5 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) 59319 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 485.167-6 chr8 132805462 132805939 + 1.5 NA intron (NM_198513, intron 7 of 7) intron (NM_198513, intron 7 of 7) 30312 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 405.667 chr10 101341251 101341662 + 1.5 NA Intergenic Intergenic -12577 NM_001256856 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 227.667-35 chr5 74461545 74461833 + 1.5 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 75287 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 281.333-7 chr12 21248855 21249147 + 1.5 NA Intergenic L4_C_Mam|LINE|RTE-X 85916 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 376.167-2 chr1 237405241 237405728 + 1.5 NA intron (NM_001035, intron 10 of 104) intron (NM_001035, intron 10 of 104) -65635 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 410-16 chrX 38764459 38764846 + 1.5 NA Intergenic Intergenic -36780 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 263.833-5 chr2 141525691 141526041 + 1.5 NA intron (NM_018557, intron 2 of 90) MER53|DNA|hAT 605835 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 172.667-3 chr1 187974107 187974297 + 1.5 NA Intergenic Intergenic 530574 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 465.667 chr12 121956770 121957210 + 1.5 NA intron (NM_001178003, intron 10 of 17) MIR|SINE|MIR 38398 NM_001178003 144406 Hs.709837 NM_144668 ENSG00000158023 WDR66 CFAP251|CaM-IP4|SPGF33 WD repeat domain 66 protein-coding 211-44 chr7 107151095 107151424 + 1.5 NA intron (NM_002736, intron 7 of 10) intron (NM_002736, intron 7 of 10) -17702 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 297.333-6 chr11 114738943 114739261 + 1.5 NA Intergenic Intergenic 60575 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 333.5-11 chr18 77102423 77102781 + 1.5 NA intron (NM_001025100, intron 2 of 3) intron (NM_001025100, intron 2 of 3) 30181 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 688.834-3 chr15 34587601 34588833 + 1.5 NA Intergenic Intergenic -4647 NR_027410 440270 Hs.720151 NM_001023567 ENSG00000215252 GOLGA8B GOLGA5 golgin A8 family member B protein-coding 296.333-24 chr9 28954566 28954799 + 1.5 NA intron (NM_001354574, intron 1 of 5) Charlie1a|DNA|hAT-Charlie -65727 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 235.5-26 chrX 101576242 101576470 + 1.5 NA Intergenic L1PA16|LINE|L1 25809 NM_016608 51309 Hs.9728 NM_016608 ENSG00000126947 ARMCX1 ALEX1|GASP7 armadillo repeat containing X-linked 1 protein-coding 316.333-5 chr11 112408602 112408999 + 1.5 NA Intergenic Intergenic -73432 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 497.333-5 chr6 52233714 52234669 + 1.5 NA Intergenic Intergenic 10309 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 449.001 chr4 54589284 54589683 + 1.5 NA Intergenic LTR82B|LTR|ERVL 17648 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 284.834-3 chr19 34610488 34610714 + 1.5 NA intron (NR_027620, intron 1 of 3) L1MA5|LINE|L1 -16016 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 395.167-2 chr11 77776357 77776697 + 1.5 NA intron (NM_016578, intron 1 of 15) intron (NM_016578, intron 1 of 15) 44307 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 244.167-11 chr2 19538354 19538576 + 1.5 NA Intergenic MIR3|SINE|MIR -179842 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 316.167 chr1 32731093 32731429 + 1.5 NA Intergenic MIRb|SINE|MIR -10569 NM_020888 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 403.5-5 chr14 51006013 51006539 + 1.5 NA intron (NM_015163, intron 5 of 9) intron (NM_015163, intron 5 of 9) -61793 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 503-4 chr4 70601355 70601884 + 1.5 NA exon (NM_016519, exon 6 of 13) exon (NM_016519, exon 6 of 13) 9363 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 270.167-15 chr8 111445008 111445415 + 1.5 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 68572 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 197.167-30 chr5 14016788 14016946 + 1.5 NA Intergenic Intergenic -72387 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 245.833-10 chr13 101875343 101875566 + 1.5 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) 41191 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 218.333-21 chr3 128762662 128762913 + 1.5 NA intron (NM_004637, intron 1 of 5) intron (NM_004637, intron 1 of 5) 36651 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 741.167 chr10 33193051 33193902 + 1.5 NA intron (NM_001244973, intron 12 of 16) intron (NM_001244973, intron 12 of 16) -76669 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 193.5-31 chr22 21954214 21954402 + 1.5 NA Intergenic AluJo|SINE|Alu -1460 NM_014634 9647 Hs.112728 NM_014634 ENSG00000100034 PPM1F CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2 protein phosphatase, Mg2+/Mn2+ dependent 1F protein-coding 219.167-13 chr6 65019003 65019217 + 1.5 NA intron (NM_001292009, intron 13 of 43) intron (NM_001292009, intron 13 of 43) -282308 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 381.167-4 chr13 35310569 35310883 + 1.5 NA intron (NM_015678, intron 36 of 57) intron (NM_015678, intron 36 of 57) 165963 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 176-45 chr9 78436315 78436510 + 1.5 NA Intergenic L2a|LINE|L2 139287 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 207-5 chr1 180830181 180830448 + 1.5 NA intron (NR_137330, intron 9 of 12) intron (NR_137330, intron 9 of 12) -82583 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 194.334-5 chr4 88538359 88538591 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 14665 NR_134663 101929134 Hs.734064 NR_134662 ENSG00000285122 PIGY-DT - PIGY divergent transcript ncRNA 176.5-2 chr10 97878253 97878411 + 1.5 NA intron (NM_018058, intron 14 of 14) intron (NM_018058, intron 14 of 14) -2435 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 427.167-4 chr10 90227347 90227840 + 1.5 NA Intergenic L1MEf|LINE|L1 -270220 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 375-5 chr13 85806792 85807183 + 1.5 NA Intergenic Intergenic -7568 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 447-7 chr3 111621484 111621909 + 1.5 NA intron (NR_134917, intron 8 of 14) intron (NR_134917, intron 8 of 14) -26350 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 265-30 chrX 73735815 73736034 + 1.5 NA Intergenic L1M2|LINE|L1 -56281 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 486.333-2 chr11 26512585 26512992 + 1.5 NA intron (NM_031418, intron 5 of 26) intron (NM_031418, intron 5 of 26) 38886 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 483.666 chr10 70107197 70107667 + 1.5 NA intron (NM_018649, intron 7 of 8) intron (NM_018649, intron 7 of 8) 25393 NM_032797 84883 Hs.650680 NM_032797 ENSG00000042286 AIFM2 AMID|PRG3 apoptosis inducing factor mitochondria associated 2 protein-coding 322-13 chr8 135846763 135847159 + 1.5 NA Intergenic LTR79|LTR|ERVL 389505 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 298.499 chr19 38962273 38962522 + 1.5 NA intron (NR_104026, intron 1 of 5) LTR41|LTR|ERVL -9710 NM_148169 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 192.667-34 chr7 28982462 28982723 + 1.5 NA intron (NR_038965, intron 1 of 4) intron (NR_038965, intron 1 of 4) 2625 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 362.5-6 chr2 137826107 137826514 + 1.5 NA Intergenic MIR|SINE|MIR 101622 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 363.666-3 chr18 21179778 21180225 + 1.5 NA Intergenic Intergenic -62241 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 231.167-21 chr3 12730494 12730720 + 1.5 NA Intergenic AluJb|SINE|Alu 28652 NM_001284407 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 192.5 chr1 47312741 47312894 + 1.5 NA intron (NM_003035, intron 1 of 16) intron (NM_003035, intron 1 of 16) 1330 NM_001282937 6491 Hs.525198 NM_003035 ENSG00000123473 STIL MCPH7|SIL STIL centriolar assembly protein protein-coding 225-18 chr2 196571096 196571349 + 1.5 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 21761 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 290.334-5 chr15 37773459 37773733 + 1.5 NA Intergenic Intergenic -161011 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 355.833-3 chr12 126178135 126178491 + 1.5 NA Intergenic L1MC3|LINE|L1 82321 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 277.333-20 chr2 15290108 15290453 + 1.5 NA intron (NR_052013, intron 41 of 50) intron (NR_052013, intron 41 of 50) 271054 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 528.833-3 chr3 192445963 192446412 + 1.5 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -37138 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 274-11 chr14 41322000 41322210 + 1.5 NA Intergenic L1ME3E|LINE|L1 -284751 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 396.833-3 chr1 213608922 213609382 + 1.5 NA Intergenic MER115|DNA|hAT-Tip100 -315597 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 371.333-4 chr16 59986418 59986774 + 1.5 NA intron (NR_110917, intron 1 of 3) L1MB2|LINE|L1 131243 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 174.167-48 chr9 94275989 94276198 + 1.5 NA intron (NM_194320, intron 1 of 4) intron (NM_194320, intron 1 of 4) -16782 NR_160773 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 182.5-10 chr12 18284697 18284879 + 1.5 NA intron (NM_001288774, intron 2 of 32) L1ME1|LINE|L1 23248 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 225-37 chr8 29686694 29687006 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 61259 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 235-17 chr2 163725364 163725533 + 1.5 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 10560 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 281.5-25 chr8 123637151 123637547 + 1.5 NA Intergenic Intergenic 16452 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 211.167-4 chr10 89385010 89385192 + 1.5 NA 3' UTR (NM_001010987, exon 2 of 2) 3' UTR (NM_001010987, exon 2 of 2) 7045 NM_001010987 439996 Hs.500491 NM_001010987 ENSG00000204010 IFIT1B IFIT1L|bA149I23.6 interferon induced protein with tetratricopeptide repeats 1B protein-coding 474-4 chr15 68730189 68730670 + 1.5 NA Intergenic MamTip2|DNA|hAT-Tip100 71496 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 335.167-3 chr13 36275361 36275671 + 1.5 NA intron (NM_001198910, intron 2 of 15) intron (NM_001198910, intron 2 of 15) 22298 NM_001144985 728591 Hs.656745 NM_001144981 ENSG00000242715 CCDC169 C13orf38 coiled-coil domain containing 169 protein-coding 355-13 chr6 117280462 117281085 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 15215 NM_182645 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 192-5 chr1 248181112 248181258 + 1.5 NA TTS (NM_001004688) TTS (NM_001004688) 1199 NM_001004688 391194 Hs.534728 NM_001004688 ENSG00000198601 OR2M2 OR2M2Q|OST423 olfactory receptor family 2 subfamily M member 2 protein-coding 216.167-26 chr8 77194915 77195163 + 1.5 NA Intergenic L1PA15|LINE|L1 -193995 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 228-19 chr15 93152724 93153091 + 1.5 NA Intergenic L3b|LINE|CR1 -53159 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 199-40 chr5 113423216 113423450 + 1.5 NA intron (NM_001085377, intron 1 of 18) Tigger17a|DNA|TcMar-Tigger 11656 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 356.667-14 chr9 36103969 36104299 + 1.5 NA intron (NM_021111, intron 12 of 20) intron (NM_021111, intron 12 of 20) -32402 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 331.333-3 chr12 56174457 56175036 + 1.5 NA exon (NM_003075, exon 16 of 28) exon (NM_003075, exon 16 of 28) 14737 NM_139067 6601 Hs.236030 NM_003075 ENSG00000139613 SMARCC2 BAF170|CRACC2|CSS8|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 protein-coding 303-11 chr19 35882753 35883071 + 1.5 NA Intergenic AluSx1|SINE|Alu 14467 NM_001024807 333 Hs.74565 NM_005166 ENSG00000105290 APLP1 APLP amyloid beta precursor like protein 1 protein-coding 447-8 chrX 24395905 24396302 + 1.5 NA Intergenic Intergenic 33420 NM_001136234 100130302 Hs.717243 NM_001136234 SUPT20HL1 FAM48B1|SPT20L SUPT20H like 1 protein-coding 484.833-3 chr22 32080763 32081309 + 1.5 NA intron (NM_000343, intron 5 of 14) intron (NM_000343, intron 5 of 14) 21866 NM_001256314 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 379.167-6 chr18 7684688 7685130 + 1.5 NA intron (NM_002845, intron 1 of 30) L1MB1|LINE|L1 117593 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 219-10 chr16 20300347 20300681 + 1.5 NA Intergenic MIR3|SINE|MIR 26999 NM_001007241 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 288.5-26 chr6 795974 796180 + 1.5 NA Intergenic Intergenic -72421 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 226.167-12 chr17 29242054 29242284 + 1.5 NA Intergenic Intergenic -4688 NM_005208 1411 Hs.46275 NM_005208 ENSG00000108255 CRYBA1 CRYB1|CTRCT10 crystallin beta A1 protein-coding 224.667-36 chr5 2766477 2766761 + 1.5 NA Intergenic L1MC5a|LINE|L1 14488 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 211.333-15 chr14 78973993 78974200 + 1.5 NA intron (NR_073547, intron 13 of 20) intron (NR_073547, intron 13 of 20) -225886 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 275.333-10 chr2 151810448 151810769 + 1.5 NA intron (NM_001037174, intron 4 of 5) MIRc|SINE|MIR 17813 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 395.5-9 chr9 130275986 130276302 + 1.5 NA intron (NM_001291815, intron 1 of 97) intron (NM_001291815, intron 1 of 97) 10384 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 415.5 chr15 60146373 60146831 + 1.5 NA Intergenic L1MEg|LINE|L1 142291 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 393.5-2 chr10 44642354 44642754 + 1.5 NA Intergenic L1M5|LINE|L1 -257457 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 446 chr11 64778558 64779117 + 1.5 NA promoter-TSS (NM_001346409) promoter-TSS (NM_001346409) 7 NM_201995 7536 Hs.502829 NM_004630 ENSG00000168066 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 264.333-14 chr19 43461020 43461422 + 1.5 NA 3' UTR (NM_014400, exon 5 of 5) 3' UTR (NM_014400, exon 5 of 5) 4387 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 278.5-6 chr11 109848276 109848547 + 1.5 NA Intergenic L3|LINE|CR1 -244981 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 307.5-4 chr1 159801071 159801347 + 1.5 NA intron (NM_001284217, intron 1 of 10) L1M5|LINE|L1 697 NM_001284217 343413 Hs.196955 NM_001004310 ENSG00000181036 FCRL6 FcRH6 Fc receptor like 6 protein-coding 252-25 chr2 58313845 58314112 + 1.5 NA Intergenic MER65C|LTR|ERV1 38101 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 369.5-16 chr9 95834160 95834540 + 1.5 NA intron (NR_023390, intron 2 of 2) LTR82A|LTR|ERVL -41341 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 222.833-13 chr18 4983620 4983778 + 1.5 NA Intergenic L1PA10|LINE|L1 -97483 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 202-18 chr2 68293842 68294160 + 1.5 NA exon (NM_015463, exon 3 of 3) exon (NM_015463, exon 3 of 3) 26050 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 194.5-7 chr10 4347501 4347663 + 1.5 NA Intergenic Intergenic -36664 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 226.5-33 chr5 52736534 52736709 + 1.5 NA Intergenic L1PA3|LINE|L1 -51295 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 304-20 chr22 48590476 48590827 + 1.5 NA intron (NM_015381, intron 1 of 3) intron (NM_015381, intron 1 of 3) 14311 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 431.5 chr10 19825199 19825546 + 1.5 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 8940 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 205.667-32 chr4 168917575 168917801 + 1.5 NA intron (NM_001367567, intron 7 of 11) intron (NM_001367567, intron 7 of 11) 85593 NM_001367570 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 342.833-2 chr11 70755663 70755972 + 1.5 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -93976 NM_133266 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 289.167 chr1 7546513 7546774 + 1.5 NA intron (NM_001349608, intron 5 of 21) L1PA10|LINE|L1 -123087 NM_001349614 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 246.5-2 chr10 26181468 26181976 + 1.5 NA intron (NM_017433, intron 31 of 34) L1ME4a|LINE|L1 -34585 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 202.333-23 chr22 29581120 29581474 + 1.5 NA promoter-TSS (NM_003634) promoter-TSS (NM_003634) -184 NM_003634 8508 Hs.173878 NM_003634 ENSG00000184117 NIPSNAP1 - nipsnap homolog 1 protein-coding 226.167-21 chr4 168597229 168597460 + 1.5 NA intron (NM_001166108, intron 2 of 21) Arthur1|DNA|hAT-Tip100 -34234 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 264.5-8 chr16 8792053 8792332 + 1.5 NA Intergenic Intergenic 5447 NM_015421 25880 Hs.513330 NM_015421 ENSG00000184857 TMEM186 C16orf51 transmembrane protein 186 protein-coding 238.167-12 chr15 71282486 71282682 + 1.5 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -93525 NR_120351 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 317-13 chr8 117751670 117752000 + 1.5 NA Intergenic Intergenic 169078 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 228.5-9 chr16 76177713 76178135 + 1.5 NA Intergenic L1ME1|LINE|L1 -99477 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 250-26 chr5 24086440 24086825 + 1.5 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 135284 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 350.333-2 chr12 54046507 54046998 + 1.5 NA intron (NM_014620, intron 1 of 3) intron (NM_014620, intron 1 of 3) -7083 NM_153633 3221 Hs.549040 NM_014620 ENSG00000198353 HOXC4 HOX3|HOX3E|cp19 homeobox C4 protein-coding 176-18 chr18 22124616 22124933 + 1.5 NA Intergenic L1ME3|LINE|L1 44194 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 363.333-8 chr7 24972899 24973361 + 1.5 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 7048 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 543.834 chr10 99501062 99501492 + 1.5 NA Intergenic L1MC5a|LINE|L1 29900 NR_120618 101927324 Hs.642588 NR_120618 ENSG00000257582 LINC01475 - long intergenic non-protein coding RNA 1475 ncRNA 312.5 chr1 118247822 118248064 + 1.5 NA Intergenic Intergenic -62715 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 270-11 chr13 21625784 21626160 + 1.5 NA Intergenic Intergenic -21802 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 302.501-3 chr5 130144642 130144997 + 1.5 NA intron (NM_175856, intron 2 of 2) MSTA|LTR|ERVL-MaLR 240354 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 391.167 chr1 175745004 175745286 + 1.5 NA Intergenic Intergenic -1550 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 211-40 chr5 133064750 133064944 + 1.5 NA intron (NM_002154, intron 1 of 18) intron (NM_002154, intron 1 of 18) 12834 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 183.833-7 chr10 128078626 128078758 + 1.5 NA intron (NM_001323354, intron 18 of 19) intron (NM_001323354, intron 18 of 19) -16267 NR_136150 105378553 NR_136149 AS-PTPRE - lncRNA antisense to PTPRE protein-coding gene ncRNA 206.667-7 chr11 87037867 87038155 + 1.5 NA promoter-TSS (NM_022918) promoter-TSS (NM_022918) 77 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 390.167-5 chr2 135530927 135531417 + 1.5 NA promoter-TSS (NM_032143) promoter-TSS (NM_032143) 46 NM_032143 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 233.5-21 chr20 44985098 44985308 + 1.5 NA intron (NM_001352385, intron 4 of 11) MIR|SINE|MIR 18691 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 243.167-15 chr6 43826630 43826876 + 1.5 NA Intergenic Intergenic 25580 NR_149142 285857 Hs.582798 NR_149142 ENSG00000283215 LINC02537 - long intergenic non-protein coding RNA 2537 ncRNA 216.167-4 chr1 230084510 230084738 + 1.5 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 17386 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 363-5 chr3 177411125 177411482 + 1.5 NA Intergenic Intergenic -30618 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 348.833 chr15 43902945 43903326 + 1.5 NA intron (NM_032892, intron 6 of 13) intron (NM_032892, intron 6 of 13) -24964 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 191.167-29 chr8 135323145 135323291 + 1.5 NA Intergenic Intergenic 89087 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 408.333-9 chr8 132535910 132536424 + 1.5 NA Intergenic Intergenic 25312 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 272.333 chr1 99375841 99376252 + 1.5 NA Intergenic Intergenic 111754 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 293.5-8 chr12 59983712 59983958 + 1.5 NA Intergenic L1PA11|LINE|L1 294465 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 543.334-2 chr17 76557079 76557744 + 1.5 NA promoter-TSS (NR_038108) promoter-TSS (NR_038108) -353 NR_038108 100507246 Hs.288215 NR_038108 ENSG00000163597 SNHG16 Nbla10727|Nbla12061|ncRAN small nucleolar RNA host gene 16 ncRNA 186.667-28 chr16 23060280 23060490 + 1.5 NA Intergenic Intergenic 88885 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 296.5-18 chr22 27150704 27150932 + 1.5 NA Intergenic Intergenic -36698 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 340.5-3 chr14 105081038 105081449 + 1.5 NA Intergenic L1M4|LINE|L1 -12904 NR_110546 102723354 Hs.569410 NR_110546 LINC02298 - long intergenic non-protein coding RNA 2298 ncRNA 333-3 chr11 93921864 93922145 + 1.5 NA Intergenic LTR50|LTR|ERVL -71386 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 170.5-10 chr13 87600541 87600715 + 1.5 NA intron (NR_033829, intron 1 of 5) MLT2C1|LTR|ERVL 18112 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 229-9 chr2 17269715 17269887 + 1.5 NA Intergenic Intergenic 248639 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 300-17 chr5 66124170 66124517 + 1.5 NA Intergenic L1MEg|LINE|L1 -19957 NM_001323535 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 395.5-7 chr5 135428634 135429098 + 1.5 NA Intergenic LTR67B|LTR|ERVL 18482 NM_130848 140947 Hs.152477 NM_130848 ENSG00000251380 DCANP1 C5orf20|DCNP1 dendritic cell associated nuclear protein protein-coding 361.5-13 chr5 137555784 137556091 + 1.5 NA Intergenic L1ME1|LINE|L1 -56611 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 203.833-23 chr8 49852819 49852992 + 1.5 NA Intergenic L1PA16|LINE|L1 -56891 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 211-47 chr8 126448715 126448910 + 1.5 NA Intergenic Intergenic 109666 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 404.834 chr1 179705693 179706268 + 1.5 NA Intergenic Intergenic -21796 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 407-5 chr5 80839908 80840253 + 1.5 NA intron (NM_002439, intron 20 of 23) HAL1ME|LINE|L1 -120283 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 231.667-18 chr3 113689431 113689699 + 1.5 NA intron (NM_001009899, intron 1 of 6) intron (NM_001009899, intron 1 of 6) 7077 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 466.5 chr1 156053941 156054316 + 1.5 NA promoter-TSS (NM_020131) promoter-TSS (NM_020131) -330 NM_001304342 56893 Hs.283739 NM_020131 ENSG00000160803 UBQLN4 A1U|A1Up|C1orf6|CIP75|UBIN ubiquilin 4 protein-coding 248-43 chr9 123676611 123676856 + 1.5 NA exon (NM_001352964, exon 6 of 24) exon (NM_001352964, exon 6 of 24) -191111 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 427.667-6 chr2 107513716 107514308 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -15407 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 285.833-3 chr11 115337965 115338245 + 1.5 NA intron (NR_135108, intron 1 of 1) GA-rich|Low_complexity|Low_complexity 4528 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 384.667-9 chr6 45051410 45051800 + 1.5 NA intron (NM_001350327, intron 2 of 9) L2|LINE|L2 146165 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 310.333-11 chr6 42663141 42663558 + 1.5 NA exon (NM_001363705, exon 32 of 47) exon (NM_001363705, exon 32 of 47) 59248 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 239 chr1 49385668 49385836 + 1.5 NA intron (NR_046839, intron 3 of 3) intron (NR_046839, intron 3 of 3) 86333 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 279.5-22 chr6 37791528 37791911 + 1.5 NA Intergenic MIRc|SINE|MIR -28008 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 305.5-14 chr5 17870412 17870706 + 1.5 NA intron (NR_134286, intron 4 of 7) L1MA2|LINE|L1 63285 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 278.5-10 chr14 71772568 71772786 + 1.5 NA Intergenic AluSx|SINE|Alu -159494 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 375.333-3 chr12 7637080 7637752 + 1.5 NA Intergenic Intergenic 28492 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 205.5-7 chr11 65325168 65325375 + 1.5 NA Intergenic AluJb|SINE|Alu -8581 NM_001330308 5977 Hs.13495 NM_006268 ENSG00000133884 DPF2 CSS7|REQ|UBID4|ubi-d4 double PHD fingers 2 protein-coding 216.833-15 chr2 68994894 68995119 + 1.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -18138 NM_018153 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 315.5-9 chr4 74066443 74066699 + 1.5 NA Intergenic MER41B|LTR|ERV1 -11172 NR_026769 10895 Hs.3134 NM_006692 ENSG00000248848 PPBPP2 PPBPL2|SPBPBP pro-platelet basic protein pseudogene 2 pseudo 335.667-11 chr2 189798878 189799300 + 1.5 NA intron (NM_001289408, intron 3 of 11) intron (NM_001289408, intron 3 of 11) 14639 NR_110332 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 279.833-7 chr2 108594918 108595194 + 1.5 NA intron (NM_001193488, intron 1 of 9) intron (NM_001193488, intron 1 of 9) 6750 NM_004987 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 287.5-12 chr20 19661585 19661860 + 1.5 NA intron (NM_020689, intron 7 of 16) intron (NM_020689, intron 7 of 16) -224799 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 183-30 chr2 162597337 162597570 + 1.5 NA intron (NM_033272, intron 2 of 15) L1MA7|LINE|L1 -171483 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 427.167-9 chr5 107443128 107443440 + 1.5 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 227653 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 206.5-34 chr2 175689396 175689540 + 1.5 NA Intergenic Intergenic 312799 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 232.5-30 chr8 34189611 34189882 + 1.5 NA Intergenic Intergenic -589640 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 368.166-3 chr9 1744571 1745147 + 1.5 NA Intergenic Intergenic -270488 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 219.833-10 chr16 76076906 76077172 + 1.5 NA Intergenic L1MC1|LINE|L1 -200362 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 343.833-10 chr5 50960170 50960508 + 1.5 NA Intergenic Intergenic 9848 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 169.5-12 chr11 126804671 126804851 + 1.5 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -135985 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 220.5-39 chr7 23387557 23387820 + 1.5 NA intron (NM_006547, intron 3 of 14) L1MB8|LINE|L1 -8758 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 298.333-12 chr5 24182251 24182550 + 1.5 NA Intergenic Intergenic 231052 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 303.667-14 chr8 54701335 54701698 + 1.5 NA Intergenic Intergenic 85420 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 304.666 chr18 14093728 14094130 + 1.5 NA intron (NR_033354, intron 1 of 5) MER57B2|LTR|ERV1 38506 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 321.5-24 chr9 9912876 9913196 + 1.5 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) 113644 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 658-2 chr22 38973779 38974416 + 1.5 NA intron (NM_001193289, intron 4 of 4) AluSz|SINE|Alu -8250 NM_001270411 9582 Hs.226307 NM_004900 ENSG00000179750 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme catalytic subunit 3B protein-coding 348.666-13 chr9 31426691 31427236 + 1.5 NA Intergenic Intergenic -45473 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 345.833-9 chr17 32007306 32007607 + 1.5 NA promoter-TSS (NM_001321350) promoter-TSS (NM_001321350) 73 NM_001321350 114659 Hs.514071 NM_052888 ENSG00000185158 LRRC37B LRRC37 leucine rich repeat containing 37B protein-coding 199-52 chr8 56029746 56029963 + 1.5 NA Intergenic Intergenic 44047 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 533.167 chr14 45133997 45134714 + 1.5 NA exon (NM_002013, exon 1 of 7) exon (NM_002013, exon 1 of 7) 126 NM_002013 2287 Hs.509226 NM_002013 ENSG00000100442 FKBP3 FKBP-25|FKBP-3|FKBP25|PPIase FKBP prolyl isomerase 3 protein-coding 229-24 chr5 24644725 24644938 + 1.5 NA 5' UTR (NM_001317224, exon 1 of 12) 5' UTR (NM_001317224, exon 1 of 12) 147 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 419-8 chr2 10120386 10120741 + 1.5 NA Intergenic CpG -2005 NM_001165931 6241 Hs.226390 NM_001034 ENSG00000171848 RRM2 R2|RR2|RR2M ribonucleotide reductase regulatory subunit M2 protein-coding 313 chr1 19866793 19867184 + 1.5 NA Intergenic Intergenic -15407 NM_015207 23252 Hs.374987 NM_015207 ENSG00000169914 OTUD3 DUBA4 OTU deubiquitinase 3 protein-coding 294.833-3 chr10 57842438 57842797 + 1.5 NA Intergenic MER2B|DNA|TcMar-Tigger 425277 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 259.5-15 chr2 74583180 74583641 + 1.5 NA intron (NM_001321739, intron 4 of 10) intron (NM_001321739, intron 4 of 10) 29250 NM_001318869 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 346.667-9 chr2 133174980 133175347 + 1.5 NA intron (NM_207481, intron 5 of 17) L1MC3|LINE|L1 -91032 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 398.333-7 chr18 41039019 41039420 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie 481458 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 297.5-23 chr8 140469246 140469557 + 1.5 NA Intergenic L1MC4|LINE|L1 -10822 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 204.5-24 chr22 35329293 35329489 + 1.5 NA intron (NR_156428, intron 6 of 13) L1MD3|LINE|L1 -6249 NR_037471 100500826 NR_037471 ENSG00000266320 MIR3909 mir-3909 microRNA 3909 ncRNA 330-16 chr5 6792566 6793044 + 1.5 NA Intergenic Intergenic -3075 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 301.833-11 chr7 13170693 13170903 + 1.5 NA Intergenic Intergenic 483165 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 265.5-22 chr4 4608958 4609238 + 1.5 NA intron (NR_037888, intron 2 of 5) AluJr|SINE|Alu -55228 NR_145783 109623454 NR_145783 SNORD162 - small nucleolar RNA, C/D box 162 snoRNA 255.667-20 chr9 113309159 113309552 + 1.5 NA Intergenic L1ME4b|LINE|L1 -5979 NM_001371235 334.5-5 chr10 108202747 108203245 + 1.5 NA Intergenic L2c|LINE|L2 -133703 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 396.333-6 chr4 111941455 111941938 + 1.5 NA Intergenic Intergenic -203758 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 309-10 chr14 59073204 59073471 + 1.5 NA Intergenic Intergenic -115330 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 200.167-16 chr22 20942399 20942624 + 1.5 NA intron (NR_156180, intron 2 of 3) L1MB4|LINE|L1 -14581 NR_110537 101928891 Hs.648264 NR_110537 ENSG00000237476 LINC01637 - long intergenic non-protein coding RNA 1637 ncRNA 422.667-4 chr11 95069506 95070109 + 1.5 NA non-coding (NR_103726, exon 2 of 2) non-coding (NR_103726, exon 2 of 2) 2930 NM_032102 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 193.833-6 chr14 48509953 48510149 + 1.5 NA Intergenic Intergenic -715037 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 400.167-3 chr5 111736440 111736772 + 1.5 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 19645 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 308-20 chr7 111107638 111108134 + 1.5 NA intron (NM_001099658, intron 2 of 2) intron (NM_001099658, intron 2 of 2) 16759 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 243.167-14 chr6 3001781 3002069 + 1.5 NA intron (NM_001318940, intron 1 of 6) intron (NM_001318940, intron 1 of 6) 1767 NM_001318940 4835 Hs.533050 NM_000904 ENSG00000124588 NQO2 DHQV|DIA6|NMOR2|QR2 N-ribosyldihydronicotinamide:quinone reductase 2 protein-coding 290.834-5 chr2 104064946 104065379 + 1.5 NA Intergenic L1M4|LINE|L1 343170 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 311.333-4 chr10 82041302 82041552 + 1.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 163740 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 243.5-14 chr2 112034080 112034388 + 1.5 NA Intergenic Intergenic -21035 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 291-22 chr6 137589595 137589949 + 1.5 NA Intergenic L1PB4|LINE|L1 -75874 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 183.834-5 chr9 126655922 126656192 + 1.5 NA intron (NM_001174146, intron 2 of 7) L4_C_Mam|LINE|RTE-X 41614 NM_001174147 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 307-13 chr5 129862628 129863115 + 1.5 NA Intergenic Intergenic -41594 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 274.167-16 chr7 42586915 42587142 + 1.5 NA Intergenic L1MEf|LINE|L1 119419 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 310.333-15 chr8 106207155 106207398 + 1.5 NA Intergenic L3|LINE|CR1 -62902 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 403.833-5 chr5 41710760 41711379 + 1.5 NA Intergenic L1MCa|LINE|L1 132588 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 323.833-4 chr20 17907753 17908029 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 55055 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 190-56 chr9 21111173 21111437 + 1.5 NA Intergenic Intergenic 30596 NM_002177 3467 Hs.73010 NM_002177 ENSG00000177047 IFNW1 - interferon omega 1 protein-coding 172-41 chr5 87960162 87960306 + 1.5 NA Intergenic Intergenic 298192 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 305.5-8 chr12 6274789 6275078 + 1.5 NA Intergenic Intergenic -35503 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 213.833-11 chr19 12734678 12734879 + 1.5 NA promoter-TSS (NM_024038) promoter-TSS (NM_024038) -94 NM_001329739 79002 Hs.515155 NM_024038 ENSG00000123144 TRIR C19orf43|TERCIR|fSAP18 telomerase RNA component interacting RNase protein-coding 194.833-30 chrX 22771960 22772165 + 1.5 NA intron (NR_073010, intron 3 of 11) intron (NR_073010, intron 3 of 11) -227898 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 288.5-31 chr7 154244176 154244401 + 1.5 NA intron (NM_130797, intron 1 of 25) L1ME2|LINE|L1 -60871 NM_001290252 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 353.667-3 chr1 155193262 155193692 + 1.5 NA promoter-TSS (NM_001044392) promoter-TSS (NM_001044392) -562 NM_001204295 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 275.167-5 chr10 9285227 9285625 + 1.5 NA intron (NR_120635, intron 2 of 4) intron (NR_120635, intron 2 of 4) 9813 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 216.667-11 chr13 22086781 22087084 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -123353 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 299-18 chr6 1336467 1336701 + 1.5 NA Intergenic Intergenic 24486 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 322.5-3 chr10 119190169 119190520 + 1.5 NA Intergenic Intergenic -11532 NM_001302272 10935 Hs.523302 NM_006793 ENSG00000165672 PRDX3 AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III peroxiredoxin 3 protein-coding 195.333-19 chr21 31666577 31666729 + 1.5 NA intron (NM_000454, intron 3 of 4) intron (NM_000454, intron 3 of 4) 7031 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 399-4 chr14 61646762 61647296 + 1.5 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -48484 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 207.667-8 chr12 11564762 11565110 + 1.5 NA TTS (NR_033890) TTS (NR_033890) 16906 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 227 chr1 5155132 5155377 + 1.5 NA Intergenic Intergenic 500645 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 284.5-21 chr7 31736995 31737371 + 1.5 NA Intergenic AluJr|SINE|Alu 49968 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 265.833 chr1 54516122 54516441 + 1.5 NA Intergenic AluJb|SINE|Alu -31947 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 189.167-37 chr9 10180003 10180398 + 1.5 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 380808 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 559.167 chr1 106027645 106028326 + 1.5 NA non-coding (NR_146609, exon 1 of 6) non-coding (NR_146609, exon 1 of 6) 268 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 240.167-23 chr8 81219877 81220349 + 1.5 NA Intergenic L1PB1|LINE|L1 -60423 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 578.667-2 chr19 27964052 27964637 + 1.5 NA intron (NR_146733, intron 3 of 6) intron (NR_146733, intron 3 of 6) -170404 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 212.5-11 chr11 116216963 116217137 + 1.5 NA Intergenic Intergenic -422372 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 354-3 chr11 11355227 11355599 + 1.5 NA intron (NM_198516, intron 6 of 10) MLT1A|LTR|ERVL-MaLR -2163 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 219.5-33 chr7 89684188 89684485 + 1.5 NA Intergenic Intergenic -435064 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 712.167 chr5 21810431 21811233 + 1.5 NA intron (NM_004061, intron 9 of 14) intron (NM_004061, intron 9 of 14) -73622 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 168-11 chr11 59841755 59841890 + 1.5 NA intron (NM_005142, intron 4 of 8) intron (NM_005142, intron 4 of 8) 3677 NM_005142 2694 Hs.110014 NM_005142 ENSG00000134812 CBLIF GIF|IF|IFMH|INF|TCN3 cobalamin binding intrinsic factor protein-coding 264.167-10 chr14 105033235 105033459 + 1.5 NA Intergenic MER4-int|LTR|ERV1 -12264 NM_017955 55038 Hs.34045 NM_017955 ENSG00000170779 CDCA4 HEPP|SEI-3/HEPP cell division cycle associated 4 protein-coding 175-30 chr2 122386611 122386808 + 1.5 NA Intergenic MIR|SINE|MIR 631058 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 389.667-6 chr3 66938224 66938589 + 1.5 NA Intergenic Intergenic -59901 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 229.166-3 chr9 29200625 29200987 + 1.5 NA intron (NM_001354574, intron 1 of 5) L1MC3|LINE|L1 11493 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 284.5-19 chr5 172033341 172033561 + 1.5 NA Intergenic Intergenic -26578 NM_033645 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 230.333-15 chr17 73705942 73706188 + 1.5 NA Intergenic MIR|SINE|MIR -31789 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 207-10 chr14 78617553 78617716 + 1.5 NA intron (NM_004796, intron 1 of 16) MIR3|SINE|MIR 213915 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 276-16 chr2 192787210 192787465 + 1.5 NA Intergenic Intergenic 37492 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 246.167-34 chr7 43371203 43371431 + 1.5 NA intron (NM_001287059, intron 5 of 27) L1MC1|LINE|L1 151225 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 612.5-4 chr5 106121983 106122455 + 1.5 NA Intergenic Intergenic 888795 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 310.5-8 chr2 26896684 26897091 + 1.5 NA intron (NM_001253724, intron 1 of 12) L1MA8|LINE|L1 48463 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 226.167-3 chr10 95563588 95563840 + 1.5 NA Intergenic Intergenic -2343 NM_015385 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 399.001-2 chr4 83847731 83848068 + 1.5 NA Intergenic Charlie2b|DNA|hAT-Charlie 311791 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 382.334-3 chr3 178758304 178758771 + 1.5 NA intron (NR_126560, intron 2 of 7) (TA)n|Simple_repeat|Simple_repeat 101868 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 419.667-6 chr3 70434330 70434785 + 1.5 NA Intergenic L1MC2|LINE|L1 -121919 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 168.5-50 chr8 122039570 122039718 + 1.5 NA Intergenic AluSq2|SINE|Alu -398204 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 209.667-20 chr2 214644645 214644804 + 1.5 NA Intergenic L1MB8|LINE|L1 134542 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 242.5-45 chr7 140653549 140653901 + 1.5 NA Intergenic MER89|LTR|ERV1 -12265 NM_001318053 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 167.833-39 chr6 35391392 35391513 + 1.5 NA intron (NM_001171819, intron 2 of 6) L1MC4|LINE|L1 48894 NM_006238 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 175-38 chr22 29197556 29197836 + 1.5 NA Intergenic AluJo|SINE|Alu -8200 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 383-10 chr7 30224789 30225228 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -59589 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 292.667-16 chr3 107547840 107548124 + 1.5 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 25020 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 222-13 chr13 110423631 110423885 + 1.5 NA intron (NM_001846, intron 4 of 47) L1MB3|LINE|L1 39529 NM_001267044 100129836 Hs.640035 NM_001267044 COL4A2-AS2 - COL4A2 antisense 2 protein-coding 215.167-9 chr12 54762074 54762449 + 1.5 NA Intergenic L1M5|LINE|L1 -92255 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 264-14 chr14 59162498 59162848 + 1.5 NA Intergenic Intergenic -25994 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 209.667-8 chr11 123118167 123118512 + 1.5 NA intron (NM_024769, intron 1 of 6) AluSx|SINE|Alu -56203 NM_006597 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 347.667-5 chr15 58791843 58792103 + 1.5 NA intron (NM_001040450, intron 2 of 8) L2|LINE|L2 20671 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 366.834-3 chr12 99390754 99391021 + 1.5 NA intron (NM_152788, intron 12 of 25) intron (NM_152788, intron 12 of 25) -235797 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 307-6 chr15 58439040 58439384 + 1.5 NA intron (NR_120338, intron 2 of 2) L1ME4c|LINE|L1 7221 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 300-3 chr1 248622142 248622674 + 1.5 NA Intergenic Intergenic 4720 NM_001001964 127077 Hs.626619 NM_001001964 ENSG00000279301 OR2T11 OR2T11Q olfactory receptor family 2 subfamily T member 11 (gene/pseudogene) protein-coding 257.166-5 chr6 155177253 155177493 + 1.5 NA intron (NM_012454, intron 9 of 25) intron (NM_012454, intron 9 of 25) -39593 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 350.167-14 chr9 80761244 80761724 + 1.5 NA Intergenic Intergenic 786461 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 184-52 chr8 58053567 58053822 + 1.5 NA intron (NM_147189, intron 3 of 4) intron (NM_147189, intron 3 of 4) 59171 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 309.5-16 chr4 89936181 89936568 + 1.5 NA exon (NM_007351, exon 6 of 8) exon (NM_007351, exon 6 of 8) 41520 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 297.5-9 chr14 29580435 29580739 + 1.5 NA intron (NM_001330069, intron 17 of 18) intron (NM_001330069, intron 17 of 18) 346509 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 295.333-3 chr1 227576530 227576808 + 1.5 NA intron (NM_001367909, intron 1 of 3) L1PA13|LINE|L1 13113 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 237.333-8 chr11 129116125 129116453 + 1.5 NA intron (NM_001142685, intron 4 of 21) intron (NM_001142685, intron 4 of 21) 75909 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 239.5-26 chr20 40114000 40114297 + 1.5 NA Intergenic Intergenic 109687 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 419.667-7 chr5 66791456 66791741 + 1.5 NA intron (NM_001290228, intron 3 of 4) MIR|SINE|MIR -37175 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 301.333-10 chr16 57648972 57649274 + 1.5 NA intron (NM_001370454, intron 2 of 13) intron (NM_001370454, intron 2 of 13) 9631 NM_001145774 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 706.167-3 chr17 7021971 7022557 + 1.5 NA promoter-TSS (NM_181844) promoter-TSS (NM_181844) -786 NM_181844 255877 Hs.22575 NM_181844 ENSG00000161940 BCL6B BAZF|ZBTB28|ZNF62 BCL6B transcription repressor protein-coding 263.5-16 chr2 47745131 47745446 + 1.5 NA Intergenic LTR49-int|LTR|ERV1 -37794 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 182-9 chr14 98070028 98070319 + 1.5 NA Intergenic Intergenic -92049 NR_152750 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 422-12 chr9 15883077 15883472 + 1.5 NA intron (NM_001355547, intron 23 of 24) AluJr|SINE|Alu 319296 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 261.834-7 chr7 119379743 119379972 + 1.5 NA Intergenic Intergenic 527518 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 575.166-4 chr7 92177214 92177738 + 1.5 NA intron (NR_122110, intron 2 of 2) intron (NR_122110, intron 2 of 2) -12200 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 411.667-11 chr7 64460110 64460616 + 1.5 NA Intergenic LTR61|LTR|ERV1 26670 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 351-4 chr14 54571043 54571288 + 1.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 3553 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 237-9 chr14 26501657 26501847 + 1.5 NA intron (NM_001366393, intron 2 of 4) intron (NM_001366393, intron 2 of 4) 51678 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 207.667-17 chr16 66608584 66608825 + 1.5 NA intron (NM_181553, intron 2 of 4) intron (NM_181553, intron 2 of 4) 3973 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 364.667-11 chr2 58574304 58574776 + 1.5 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 53787 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 312.5-2 chr10 21926656 21927152 + 1.5 NA intron (NM_022365, intron 3 of 11) intron (NM_022365, intron 3 of 11) 76826 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 368.5-15 chr7 107118526 107118865 + 1.5 NA intron (NM_002736, intron 2 of 10) intron (NM_002736, intron 2 of 10) -50266 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 262.167-15 chr8 60357310 60357541 + 1.5 NA Intergenic AluJr4|SINE|Alu 56393 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 398.167-6 chr5 122156401 122156942 + 1.5 NA Intergenic Intergenic -3505 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 376.833-6 chr8 116180286 116180818 + 1.5 NA intron (NR_046215, intron 4 of 13) Tigger3b|DNA|TcMar-Tigger 144507 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 604.834 chr6 80106352 80106996 + 1.5 NA promoter-TSS (NM_183050) promoter-TSS (NM_183050) 3 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 240.667-2 chr1 168471997 168472255 + 1.5 NA intron (NR_125956, intron 4 of 4) intron (NR_125956, intron 4 of 4) 23518 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 319.5-9 chr2 235135900 235136212 + 1.5 NA Intergenic Intergenic 108321 NM_001371306 227.167-14 chr2 55782713 55783169 + 1.5 NA Intergenic Intergenic -89097 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 255.167-17 chr2 27098564 27098832 + 1.5 NA TTS (NM_001166240) TTS (NM_001166240) 11926 NM_000221 3795 Hs.567297 NM_000221 ENSG00000138030 KHK - ketohexokinase protein-coding 337.167-11 chr9 87898811 87899210 + 1.5 NA intron (NR_149022, intron 3 of 3) L1M4c|LINE|L1 16133 NM_178828 286234 Hs.130672 NM_178828 ENSG00000177992 SPATA31E1 C9orf79|FAM75E1 SPATA31 subfamily E member 1 protein-coding 385.167-13 chr8 131284699 131285027 + 1.5 NA Intergenic Intergenic -243954 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 252.5-7 chr12 10024120 10024386 + 1.5 NA intron (NR_120484, intron 2 of 2) intron (NR_120484, intron 2 of 2) 6353 NR_120484 102724020 Hs.737731 NR_120484 ENSG00000256803 LOC102724020 - uncharacterized LOC102724020 ncRNA 195.333-8 chr10 128069525 128069962 + 1.5 NA exon (NM_001323355, exon 12 of 20) exon (NM_001323355, exon 12 of 20) -7318 NR_136150 105378553 NR_136149 AS-PTPRE - lncRNA antisense to PTPRE protein-coding gene ncRNA 337.167-9 chr2 33475405 33475796 + 1.5 NA intron (NM_001349979, intron 1 of 17) intron (NM_001349979, intron 1 of 17) -1049 NM_001139488 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 431.667 chr10 26881761 26882215 + 1.5 NA Intergenic Intergenic -20901 NM_001178122 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 241.167-18 chr2 140349291 140349674 + 1.5 NA intron (NM_018557, intron 77 of 90) intron (NM_018557, intron 77 of 90) 237203 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 507.167-5 chr7 118721167 118721557 + 1.5 NA Intergenic L1MC1|LINE|L1 496658 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 320.167-2 chr12 43407809 43408032 + 1.5 NA intron (NM_025003, intron 28 of 38) intron (NM_025003, intron 28 of 38) 144283 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 331.5-2 chr1 246752024 246752474 + 1.5 NA intron (NM_016002, intron 5 of 11) HERVIP10F-int|LTR|ERV1 27840 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 164.5 chr1 14486994 14487231 + 1.5 NA Intergenic Intergenic -67139 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 269.333-6 chr15 59138093 59138395 + 1.5 NA exon (NM_004998, exon 27 of 28) exon (NM_004998, exon 27 of 28) 33018 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 193.667-53 chr9 82000439 82000864 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 11879 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 253.5-25 chr4 77698536 77698867 + 1.5 NA Intergenic MIRb|SINE|MIR 120363 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 307-11 chr4 139326114 139326521 + 1.5 NA intron (NM_057175, intron 1 of 19) MIR|SINE|MIR -23766 NM_001184990 4717 Hs.84549 NM_002494 ENSG00000109390 NDUFC1 KFYI NADH:ubiquinone oxidoreductase subunit C1 protein-coding 416.666-3 chr8 121679468 121679832 + 1.5 NA Intergenic Intergenic -38210 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 169.833-36 chr5 82799326 82799924 + 1.5 NA Intergenic Intergenic -40530 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 193.667-44 chr5 118670770 118671088 + 1.5 NA Intergenic L1MA7|LINE|L1 74741 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 236.5-9 chr14 28795865 28796154 + 1.5 NA Intergenic Intergenic -10222 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 414.666-3 chr4 121484298 121484742 + 1.5 NA Intergenic L1PA15-16|LINE|L1 -103502 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 271.666-4 chr15 72673428 72673626 + 1.5 NA Intergenic L1ME4a|LINE|L1 -12652 NM_001252678 585 Hs.208681 NM_033028 ENSG00000140463 BBS4 - Bardet-Biedl syndrome 4 protein-coding 208.167-19 chr3 196070487 196070632 + 1.5 NA intron (NM_001313966, intron 4 of 16) intron (NM_001313966, intron 4 of 16) 11531 NM_001313965 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 181.333-2 chr1 214328959 214329231 + 1.5 NA intron (NM_020197, intron 7 of 11) intron (NM_020197, intron 7 of 11) 47936 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 530.666-2 chr5 138133408 138133881 + 1.5 NA intron (NM_003551, intron 2 of 5) intron (NM_003551, intron 2 of 5) 5784 NM_003551 8382 Hs.730856 NM_003551 ENSG00000112981 NME5 NM23-H5|NM23H5|RSPH23 NME/NM23 family member 5 protein-coding 166.167-29 chr4 18925795 18925964 + 1.5 NA Intergenic L1ME3|LINE|L1 -904004 NR_158565 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 329.167-4 chr10 104816472 104816836 + 1.5 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -150438 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 336.833 chr12 63987013 63987506 + 1.5 NA intron (NM_001346201, intron 2 of 21) intron (NM_001346201, intron 2 of 21) 142559 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 261.5-35 chr7 99081325 99081720 + 1.5 NA intron (NM_020429, intron 1 of 18) L1M4|LINE|L1 62586 NM_181349 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 479.167-2 chr5 162158734 162159202 + 1.5 NA Intergenic Intergenic 91326 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 212.667-3 chr10 106187972 106188140 + 1.5 NA intron (NR_134330, intron 4 of 4) intron (NR_134330, intron 4 of 4) 47891 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 289.167-3 chr10 77386884 77387204 + 1.5 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 36172 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 263.333-19 chr5 21420510 21420942 + 1.5 NA Intergenic Intergenic -38754 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 286.667 chr1 76040473 76040696 + 1.5 NA Intergenic MER61E|LTR|ERV1 29260 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 709.833-2 chr8 6139910 6141105 + 1.5 NA Intergenic MIRb|SINE|MIR 266041 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 201.333-20 chr18 12489518 12489725 + 1.5 NA intron (NM_001128626, intron 8 of 16) L1ME4a|LINE|L1 56847 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 220.334-5 chr4 69614416 69614638 + 1.5 NA intron (NM_001301239, intron 1 of 4) L1MA3|LINE|L1 25115 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 298.167-7 chr2 41938889 41939215 + 1.5 NA intron (NR_161189, intron 3 of 3) intron (NR_161189, intron 3 of 3) -5329 NR_110263 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 425.5-10 chr9 130327194 130327583 + 1.5 NA exon (NM_001291815, exon 22 of 98) exon (NM_001291815, exon 22 of 98) 61628 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 254.5-23 chr20 55056897 55057137 + 1.5 NA Intergenic Intergenic -366026 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 262.333-22 chr8 66566219 66566712 + 1.5 NA intron (NM_001080416, intron 14 of 15) intron (NM_001080416, intron 14 of 15) 46753 NM_001080416 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 285.5-29 chr7 80740949 80741336 + 1.5 NA Intergenic Intergenic 94489 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 371.833-8 chr4 89056965 89057219 + 1.5 NA promoter-TSS (NM_014883) promoter-TSS (NM_014883) 93 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 440 chr1 202200259 202200813 + 1.5 NA intron (NM_001017403, intron 1 of 17) intron (NM_001017403, intron 1 of 17) -3176 NM_021636 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 413.667-8 chr3 171879013 171879362 + 1.5 NA intron (NR_046852, intron 2 of 2) intron (NR_046852, intron 2 of 2) 21553 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 338.834-2 chr15 69249483 69249950 + 1.5 NA intron (NM_001324092, intron 2 of 3) intron (NM_001324092, intron 2 of 3) -49196 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 214.333 chr1 87039127 87039496 + 1.5 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) -90454 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 216.167-7 chr10 92736852 92737148 + 1.5 NA Intergenic AluJo|SINE|Alu 47045 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 279.167-12 chr4 156087391 156087665 + 1.5 NA Intergenic Intergenic -133662 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 177.5-49 chr8 114455822 114456044 + 1.5 NA Intergenic Intergenic -1018994 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 258.667-30 chr9 104678838 104679213 + 1.5 NA Intergenic L1MA3|LINE|L1 -15397 NM_001004484 286365 Hs.553683 NM_001004484 ENSG00000179055 OR13D1 OR9-15 olfactory receptor family 13 subfamily D member 1 protein-coding 184.5-42 chr4 112297146 112297400 + 1.5 NA promoter-TSS (NM_001253884) promoter-TSS (NM_001253884) -70 NM_001253884 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 335.5-9 chr6 54621192 54621454 + 1.5 NA Intergenic MIRb|SINE|MIR -225448 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 417.5-11 chr8 129561266 129561702 + 1.5 NA intron (NR_130917, intron 1 of 3) MSTD|LTR|ERVL-MaLR 13534 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 171.5-20 chr16 70441028 70441179 + 1.5 NA Intergenic FLAM_C|SINE|Alu -2003 NM_006927 6483 Hs.368611 NM_006927 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 348.667 chr1 76373784 76374191 + 1.5 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 299241 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 173.833-5 chr1 118262397 118262767 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -77354 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 255.667-5 chr14 22296567 22296894 + 1.5 NA Intergenic Intergenic 136023 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 333.667-3 chr16 81874113 81874448 + 1.5 NA intron (NM_002661, intron 7 of 32) intron (NM_002661, intron 7 of 32) 94989 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 255-3 chr1 110406069 110406334 + 1.5 NA intron (NM_006402, intron 2 of 3) intron (NM_006402, intron 2 of 3) -1608 NR_102697 101410535 Hs.559121 NR_102697 LAMTOR5-AS1 - LAMTOR5 antisense RNA 1 ncRNA 501.833-2 chr7 1709533 1710155 + 1.5 NA intron (NM_001128636, intron 2 of 2) intron (NM_001128636, intron 2 of 2) 21725 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 369.5-9 chr18 8601279 8601767 + 1.5 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -7922 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 291.833-8 chr2 44312635 44312888 + 1.5 NA intron (NM_000341, intron 8 of 9) intron (NM_000341, intron 8 of 9) 37281 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 219.5-3 chr10 31377274 31377446 + 1.5 NA intron (NM_001323638, intron 4 of 12) intron (NM_001323638, intron 4 of 12) 22395 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 250.5-2 chr10 27026916 27027149 + 1.5 NA intron (NM_014915, intron 27 of 33) AluSx1|SINE|Alu 73466 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 282.667-6 chr10 31131769 31132066 + 1.5 NA Intergenic Intergenic -55966 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 249-14 chr16 82622096 82622270 + 1.5 NA Intergenic Intergenic -4786 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 290.667-9 chr17 76351720 76351961 + 1.5 NA intron (NM_001366236, intron 1 of 9) intron (NM_001366236, intron 1 of 9) 2076 NM_001330503 5635 Hs.77498 NM_002766 ENSG00000161542 PRPSAP1 PAP39 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding 340-19 chr8 28493178 28493536 + 1.5 NA promoter-TSS (NM_145866) promoter-TSS (NM_145866) -848 NM_145866 7976 Hs.40735 NM_017412 ENSG00000104290 FZD3 Fz-3 frizzled class receptor 3 protein-coding 538-2 chr22 45246490 45246987 + 1.5 NA Intergenic Intergenic -5969 NM_001009880 23313 Hs.592207 NM_015264 ENSG00000100364 KIAA0930 C22orf9|LSC3 KIAA0930 protein-coding 424-6 chr21 30380319 30380859 + 1.5 NA Intergenic L1ME1|LINE|L1 -5211 NR_036221 100422891 NR_036221 ENSG00000265007 MIR4327 - microRNA 4327 ncRNA 353.5-12 chr21 24525889 24526267 + 1.5 NA intron (NR_135519, intron 1 of 2) intron (NR_135519, intron 1 of 2) 97338 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 288.5-18 chr3 46553161 46553490 + 1.5 NA intron (NM_024512, intron 1 of 8) intron (NM_024512, intron 1 of 8) -4073 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 370.5-4 chr12 43882688 43883344 + 1.5 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 46935 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 336-6 chr11 28683969 28684249 + 1.5 NA Intergenic Intergenic -206561 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 249-11 chr14 73101654 73101874 + 1.5 NA intron (NM_021239, intron 9 of 18) intron (NM_021239, intron 9 of 18) -34743 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 238.333-7 chr10 91824489 91824732 + 1.5 NA intron (NM_025235, intron 7 of 26) L3|LINE|CR1 26184 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 216-13 chr14 59091068 59091290 + 1.5 NA Intergenic Intergenic -97488 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 259.333-17 chr17 62833674 62833965 + 1.5 NA intron (NR_135634, intron 1 of 1) intron (NR_135634, intron 1 of 1) 25317 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 463.5-3 chr3 104884412 104884791 + 1.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -482112 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 374.5-4 chr2 189142075 189142365 + 1.5 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) -9109 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 228-37 chr7 38333664 38333895 + 1.5 NA Intergenic Intergenic -7798 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 166.5-43 chr9 31701736 31701948 + 1.5 NA Intergenic LTR53B|LTR|ERVL -320352 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 428-4 chr12 5380691 5381146 + 1.5 NA Intergenic Intergenic -51190 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 256.5-6 chr11 91498262 91498547 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -629202 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 311.333 chr1 178568169 178568405 + 1.5 NA Intergenic L1M4|LINE|L1 25491 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 313.667-10 chr2 164571358 164571595 + 1.5 NA intron (NM_004490, intron 2 of 13) intron (NM_004490, intron 2 of 13) -2981 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 440-10 chr6 1116756 1117235 + 1.5 NA Intergenic MSTC|LTR|ERVL-MaLR -15663 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 342.667-8 chr2 141767145 141767438 + 1.5 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 364410 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 444.333-2 chr10 51422589 51423214 + 1.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 123328 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 176.667-56 chr8 40356470 40356674 + 1.5 NA Intergenic Intergenic -13209 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 306.834-8 chr3 121750862 121751212 + 1.5 NA Intergenic L1MA4|LINE|L1 -1270 NM_001256488 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 237-28 chr3 191194946 191195233 + 1.5 NA Intergenic L1ME1|LINE|L1 -4152 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 344.833-7 chr4 91385352 91385724 + 1.5 NA intron (NM_001145065, intron 10 of 10) L1MC4|LINE|L1 891764 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 280.333-16 chr2 75582870 75583194 + 1.5 NA Intergenic L1MA3|LINE|L1 -13313 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 251-34 chr8 26425131 26425328 + 1.5 NA Intergenic L1ME4b|LINE|L1 34816 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 229.5-22 chr21 14403875 14404101 + 1.5 NA Intergenic Intergenic -20842 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 286.834-2 chr2 30454753 30455018 + 1.5 NA intron (NM_001304446, intron 1 of 5) intron (NM_001304446, intron 1 of 5) 7639 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 252-26 chr2 99436222 99436429 + 1.5 NA intron (NR_135652, intron 6 of 21) MIR|SINE|MIR 53692 NM_001037872 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 227.833-10 chr19 3075911 3076077 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie -11280 NR_031672 100302233 NR_031672 ENSG00000221641 MIR1268A MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a microRNA 1268a ncRNA 174.834-5 chr16 6335790 6335974 + 1.5 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 316179 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 225.833-20 chr5 105141153 105141414 + 1.5 NA Intergenic Intergenic 41809 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 207-12 chr16 89388045 89388231 + 1.5 NA intron (NR_045839, intron 2 of 9) L1MC4a|LINE|L1 -42780 NR_110932 101927817 Hs.667942 NR_110931 LOC101927817 - uncharacterized LOC101927817 ncRNA 291-10 chr12 42244346 42244657 + 1.5 NA Intergenic MER46C|DNA|TcMar-Tigger -6133 NM_001190977 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 264.333-21 chr4 10389924 10390141 + 1.5 NA Intergenic L1MA3|LINE|L1 67394 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 192-45 chr8 66662253 66662497 + 1.5 NA intron (NM_025054, intron 1 of 2) intron (NM_025054, intron 1 of 2) 4856 NM_025054 80124 Hs.632066 NM_025054 ENSG00000175073 VCPIP1 DUBA3|VCIP135 valosin containing protein interacting protein 1 protein-coding 253.333-36 chr7 104829110 104829386 + 1.5 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -25156 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 223-8 chr11 129203481 129203673 + 1.5 NA Intergenic Intergenic -11379 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 183.833-5 chr10 111281606 111281768 + 1.5 NA Intergenic Intergenic 167396 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 499-2 chr13 108957706 108958385 + 1.5 NA intron (NM_015011, intron 17 of 34) L2b|LINE|L2 209258 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 321-10 chr19 50148004 50148330 + 1.5 NA Intergenic CpG -7847 NR_024243 100170227 Hs.717309 NR_024243 SNAR-D - small NF90 (ILF3) associated RNA D snRNA 252.167-2 chr1 68313681 68314205 + 1.5 NA Intergenic Intergenic -81397 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 200.5-26 chr2 113816890 113817100 + 1.5 NA Intergenic Intergenic -60353 NM_001330315 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 253.334-12 chr4 82665926 82666105 + 1.5 NA intron (NM_024906, intron 3 of 3) intron (NM_024906, intron 3 of 3) -44578 NR_024088 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 802.834 chr2 20650696 20651658 + 1.5 NA promoter-TSS (NM_022460) promoter-TSS (NM_022460) -79 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 174.667-33 chr3 93967305 93967480 + 1.5 NA intron (NM_001314077, intron 1 of 15) intron (NM_001314077, intron 1 of 15) 6689 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 269-23 chr5 127166815 127167094 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -93462 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 364.667-8 chr17 75861217 75861523 + 1.5 NA Intergenic LTR50|LTR|ERVL -4934 NM_001348170 23558 Hs.514489 NM_012478 ENSG00000132471 WBP2 DFNB107|GRAMD6|WBP-2 WW domain binding protein 2 protein-coding 211.667-45 chr7 136757831 136758184 + 1.5 NA Intergenic Intergenic -110645 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 208.167-12 chr19 45339170 45339415 + 1.5 NA Intergenic L2c|LINE|L2 -1458 NM_177417 147700 Hs.298079 NM_145275 ENSG00000104892 KLC3 KLC2|KLC2L|KLCt|KNS2B kinesin light chain 3 protein-coding 387-15 chr4 117827944 117828376 + 1.5 NA Intergenic MLT2B1|LTR|ERVL -6241 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 174.667-46 chr5 142016235 142016513 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -3347 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 270.5-17 chr18 61450794 61451212 + 1.5 NA intron (NM_031891, intron 1 of 11) L1ME4a|LINE|L1 117573 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 288.333-12 chr21 28256811 28257313 + 1.5 NA Intergenic Intergenic -28395 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 392.5-2 chr1 201254657 201255150 + 1.5 NA Intergenic Intergenic -28549 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 425.167-4 chr7 148876932 148877370 + 1.5 NA intron (NM_001203247, intron 1 of 19) intron (NM_001203247, intron 1 of 19) 6334 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 256-25 chr6 89834975 89835218 + 1.5 NA intron (NM_012115, intron 1 of 9) AluSx|SINE|Alu 5196 NM_001137668 9994 Hs.558218 NM_012115 ENSG00000118412 CASP8AP2 CED-4|FLASH|RIP25 caspase 8 associated protein 2 protein-coding 248.333-4 chr1 198975283 198975579 + 1.5 NA Intergenic Intergenic -38002 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 254.833-14 chr2 198655588 198656100 + 1.5 NA Intergenic Intergenic -280747 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 279.5-2 chr10 16067886 16068213 + 1.5 NA Intergenic MLT2B4|LTR|ERVL -207516 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 315.5-6 chr2 112643473 112643740 + 1.5 NA intron (NR_033871, intron 2 of 4) MIR|SINE|MIR 574 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 271.833-2 chr1 200665693 200665944 + 1.5 NA intron (NM_001031725, intron 2 of 7) intron (NM_001031725, intron 2 of 7) 933 NM_001320182 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 180.167-9 chr15 73306064 73306348 + 1.5 NA TTS (NM_001172623) TTS (NM_001172623) 6296 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 305.833-7 chr16 80551267 80551524 + 1.5 NA TTS (NM_001305017) TTS (NM_001305017) 10402 NM_130897 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 198-37 chr6 108620287 108620498 + 1.5 NA intron (NM_201559, intron 2 of 3) intron (NM_201559, intron 2 of 3) 59475 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 207.5-16 chr17 43834092 43834304 + 1.5 NA Intergenic Intergenic -1004 NM_001932 4356 Hs.396566 NM_001932 ENSG00000161647 MPP3 DLG3 membrane palmitoylated protein 3 protein-coding 581 chr17 39199779 39200324 + 1.5 NA promoter-TSS (NM_000981) promoter-TSS (NM_000981) -232 NM_000981 6143 Hs.381061 NM_000981 ENSG00000108298 RPL19 L19 ribosomal protein L19 protein-coding 328.667-2 chr10 25076536 25077007 + 1.5 NA Intergenic Intergenic -14492 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 322.667-21 chr3 181539800 181540039 + 1.5 NA intron (NR_075091, intron 3 of 7) AluJr|SINE|Alu -70415 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 271.167-13 chr20 11589511 11589705 + 1.5 NA Intergenic Intergenic 281107 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 352.834-3 chr19 27808762 27809122 + 1.5 NA intron (NR_146736, intron 2 of 2) L1MA1|LINE|L1 -15002 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 414.5-4 chr6 152669899 152670539 + 1.5 NA Intergenic Intergenic -27676 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 177.167-25 chr7 50271609 50271850 + 1.5 NA Intergenic Intergenic -32335 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 223.667-4 chr1 187409742 187410059 + 1.5 NA Intergenic Intergenic -33728 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 413.167-2 chr15 90931820 90932318 + 1.5 NA exon (NM_198527, exon 2 of 4) exon (NM_198527, exon 2 of 4) 480 NR_104447 374659 Hs.349979 NM_198527 ENSG00000184508 HDDC3 (ppGpp)ase|MESH1 HD domain containing 3 protein-coding 376.5 chr1 201955189 201955492 + 1.5 NA promoter-TSS (NM_006335) promoter-TSS (NM_006335) -163 NM_006335 10440 Hs.20716 NM_006335 ENSG00000134375 TIMM17A TIM17|TIM17A translocase of inner mitochondrial membrane 17A protein-coding 295.167-15 chr4 85601013 85601237 + 1.5 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -121343 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 411.666 chr1 161097784 161098311 + 1.5 NA promoter-TSS (NR_033385) promoter-TSS (NR_033385) -314 NM_001007255 126823 Hs.507290 NM_152366 ENSG00000162755 KLHDC9 KARCA1 kelch domain containing 9 protein-coding 247.5-16 chr17 29674039 29674251 + 1.5 NA exon (NM_001282130, exon 8 of 8) exon (NM_001282130, exon 8 of 8) -52722 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 324.5-10 chr5 140735121 140735563 + 1.5 NA Intergenic Intergenic 9183 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 221.333-4 chr11 65348653 65349102 + 1.5 NA exon (NM_006268, exon 10 of 11) exon (NM_006268, exon 10 of 11) -5874 NM_145719 220359 Hs.632121 NM_145719 ENSG00000173825 TIGD3 - tigger transposable element derived 3 protein-coding 440.999 chr5 155616755 155617337 + 1.5 NA Intergenic Intergenic 603291 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 329.667-9 chr6 165298790 165299198 + 1.5 NA intron (NM_144980, intron 4 of 8) intron (NM_144980, intron 4 of 8) 10611 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 343 chr1 96977733 96978014 + 1.5 NA Intergenic Intergenic -118050 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 201.333-2 chr1 33201108 33201370 + 1.5 NA Intergenic L1MEc|LINE|L1 -19196 NM_018207 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 469.5-4 chr4 51842451 51843211 + 1.5 NA promoter-TSS (NM_001287757) promoter-TSS (NM_001287757) -169 NM_015115 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 254.667-21 chr3 96074246 96074610 + 1.5 NA Intergenic L1MEg2|LINE|L1 -285536 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 512.333 chr14 59018769 59019432 + 1.5 NA Intergenic L1M3a|LINE|L1 -169567 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 378-2 chr1 119138904 119139206 + 1.5 NA intron (NM_015836, intron 1 of 5) intron (NM_015836, intron 1 of 5) -1341 NR_125974 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 262.667-13 chr12 46315421 46315692 + 1.5 NA Intergenic L1MB3|LINE|L1 -46513 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 255-35 chr6 53986090 53986312 + 1.5 NA intron (NR_125842, intron 2 of 3) intron (NR_125842, intron 2 of 3) -12689 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 250.334 chr11 4182046 4182267 + 1.5 NA Intergenic Intergenic -4996 NR_047550 100506082 Hs.445705 NR_047550 ENSG00000254480 LINC02749 - long intergenic non-protein coding RNA 2749 ncRNA 335.501-3 chr7 47991497 47991852 + 1.5 NA intron (NM_001030019, intron 8 of 9) intron (NM_001030019, intron 8 of 9) -12059 NM_001363683 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 243-16 chr4 110050072 110050377 + 1.5 NA 3' UTR (NM_024090, exon 4 of 4) 3' UTR (NM_024090, exon 4 of 4) 137341 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 311.5-20 chr6 130673195 130673529 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -154043 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 225.167-12 chr17 7234310 7234624 + 1.5 NA promoter-TSS (NM_004422) promoter-TSS (NM_004422) 50 NM_004422 1856 Hs.118640 NM_004422 ENSG00000004975 DVL2 - dishevelled segment polarity protein 2 protein-coding 295-27 chr7 101744995 101745308 + 1.5 NA Intergenic AluSz|SINE|Alu -70856 NM_001202543 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 304.667-11 chr22 33685978 33686397 + 1.5 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) 18733 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 448.5-3 chr10 92842990 92843673 + 1.5 NA intron (NM_001319194, intron 2 of 22) intron (NM_001319194, intron 2 of 22) -5124 NM_001319200 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 204-23 chr20 63077922 63078218 + 1.5 NA intron (NR_033370, intron 1 of 4) L1MB3|LINE|L1 -23222 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 356-10 chr18 6734075 6734385 + 1.5 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -4368 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 394.167 chr1 44924954 44925303 + 1.5 NA intron (NM_001166588, intron 5 of 9) L1MB2|LINE|L1 61467 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 325-4 chr12 43110409 43111013 + 1.5 NA Intergenic Intergenic -44604 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 216.167-22 chr3 79373878 79374022 + 1.5 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -37777 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 226-20 chr17 57905310 57905487 + 1.5 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -2009 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 204.834-11 chr5 158861947 158862110 + 1.5 NA intron (NM_182708, intron 5 of 14) L1M5|LINE|L1 235928 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 300.667-9 chr2 107224877 107225254 + 1.5 NA intron (NR_049853, intron 2 of 3) (TA)n|Simple_repeat|Simple_repeat 124460 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 333.167 chr11 86747516 86747851 + 1.5 NA Intergenic AluSx1|SINE|Alu -43388 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 382.334 chr14 86740701 86741141 + 1.5 NA Intergenic L1ME4a|LINE|L1 -164857 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 500.5 chr19 45646066 45646662 + 1.5 NA promoter-TSS (NM_001193268) promoter-TSS (NM_001193268) -735 NM_001193268 24139 Hs.24178 NM_012155 ENSG00000125746 EML2 ELP70|EMAP-2|EMAP2 EMAP like 2 protein-coding 193.5-37 chr4 117061109 117061370 + 1.5 NA Intergenic L3b|LINE|CR1 24337 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 259.5-28 chr5 36883599 36884051 + 1.5 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 7056 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 168.667-10 chr12 26095128 26095539 + 1.5 NA Intergenic Intergenic 29704 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 324-14 chr4 23694529 23694832 + 1.5 NA Intergenic MIRb|SINE|MIR 186612 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 200.667-39 chr4 48720727 48721347 + 1.5 NA intron (NM_015030, intron 1 of 63) MIRb|SINE|MIR 59262 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 361.167-8 chr7 100731982 100732348 + 1.5 NA Intergenic AluJb|SINE|Alu -1430 NM_003386 7455 Hs.307004 NM_003386 ENSG00000146839 ZAN - zonadhesin (gene/pseudogene) protein-coding 258.833-4 chr15 63531987 63532310 + 1.5 NA intron (NR_046341, intron 2 of 15) intron (NR_046341, intron 2 of 15) 27555 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 506-2 chr2 211823670 211824169 + 1.5 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 602441 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 283-12 chr3 111513711 111514193 + 1.5 NA Intergenic Intergenic -28245 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 203.5-6 chr11 20368521 20368821 + 1.5 NA intron (NM_001098521, intron 3 of 5) intron (NM_001098521, intron 3 of 5) 4530 NM_001098523 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 312.833-6 chr5 141094494 141094864 + 1.5 NA promoter-TSS (NM_018936) promoter-TSS (NM_018936) 64 NM_018936 56133 Hs.533023 NM_018936 ENSG00000112852 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 231-32 chr9 73643503 73643887 + 1.5 NA Intergenic Intergenic 491830 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 298.5 chr1 40450478 40450916 + 1.5 NA 5' UTR (NM_023070, exon 1 of 5) 5' UTR (NM_023070, exon 1 of 5) 221 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 480.167-4 chr4 101790772 101791411 + 1.5 NA intron (NM_001127507, intron 1 of 15) intron (NM_001127507, intron 1 of 15) 361 NM_017935 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 276.667-10 chr14 53308414 53308813 + 1.5 NA Intergenic MamTip1|DNA|hAT-Tip100 155259 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 258.833-5 chr16 54631878 54632232 + 1.5 NA Intergenic Intergenic 216178 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 208.333-21 chr2 15103776 15104137 + 1.5 NA Intergenic L3|LINE|CR1 457378 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 267.333-23 chr7 47534644 47534824 + 1.5 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 47377 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 175.167-7 chr11 70366990 70367152 + 1.5 NA intron (NR_045286, intron 22 of 28) intron (NR_045286, intron 22 of 28) -31435 NM_138565 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 291.333 chr1 110125508 110125844 + 1.5 NA Intergenic MamGypLTR1b|LTR|Gypsy 13233 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 316.667-10 chr4 48509938 48510624 + 1.5 NA intron (NM_015030, intron 58 of 63) intron (NM_015030, intron 58 of 63) 20029 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 250.333-14 chr3 101962067 101962453 + 1.5 NA intron (NR_026934, intron 2 of 3) intron (NR_026934, intron 2 of 3) 21401 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 264.833-21 chr7 31799636 31800024 + 1.5 NA intron (NM_001322057, intron 17 of 17) intron (NM_001322057, intron 17 of 17) 112615 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 352.667-6 chr2 69176589 69176960 + 1.5 NA intron (NM_032208, intron 14 of 17) intron (NM_032208, intron 14 of 17) 73092 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 259.333-13 chr15 97903936 97904361 + 1.5 NA Intergenic Intergenic -29719 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 583.5-4 chrX 131813000 131813637 + 1.5 NA intron (NR_026975, intron 2 of 12) intron (NR_026975, intron 2 of 12) 17325 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 488.333-4 chr4 40146398 40146850 + 1.5 NA intron (NM_001318359, intron 17 of 18) L1MA9|LINE|L1 -44456 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 242-12 chr17 71994212 71994519 + 1.5 NA Intergenic L1P4e|LINE|L1 31614 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 281.833-10 chr4 111017047 111017534 + 1.5 NA Intergenic Intergenic -156643 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 324.5-14 chr8 89253407 89253965 + 1.5 NA Intergenic L1PA16|LINE|L1 504025 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 173.5-28 chr17 56020674 56020914 + 1.5 NA Intergenic Intergenic -132681 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 248.334-6 chr2 211426441 211426654 + 1.5 NA intron (NM_001042599, intron 22 of 26) intron (NM_001042599, intron 22 of 26) 808976 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 281-15 chr21 30392192 30392451 + 1.5 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -3710 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 252-16 chr12 21636107 21636427 + 1.5 NA intron (NM_001174097, intron 7 of 7) intron (NM_001174097, intron 7 of 7) 21527 NM_001174097 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 583.666 chr1 20361608 20362329 + 1.5 NA non-coding (NR_033887, exon 12 of 12) non-coding (NR_033887, exon 12 of 12) 66826 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 268.667-27 chr6 162801034 162801292 + 1.5 NA intron (NM_001080379, intron 1 of 4) AluSx|SINE|Alu 73193 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 257.5-17 chr2 25991172 25991444 + 1.5 NA Intergenic FLAM_C|SINE|Alu -8811 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 353.833-5 chr10 67383136 67383384 + 1.5 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 20150 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 302-7 chr15 70101702 70101937 + 1.5 NA Intergenic Intergenic -3902 NM_005078 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 228-15 chr14 61764604 61764769 + 1.5 NA intron (NM_003082, intron 1 of 9) intron (NM_003082, intron 1 of 9) 2266 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 177.833-37 chr8 119101419 119101584 + 1.5 NA intron (NM_001324095, intron 5 of 7) LTR81A|LTR|Gypsy -32719 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 264.5-3 chr11 28688531 28688771 + 1.5 NA Intergenic Intergenic -211103 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 216-32 chr3 72858715 72858966 + 1.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger -10395 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 236.167-16 chr7 107725739 107726195 + 1.5 NA Intergenic Intergenic 17665 NR_144536 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 246.333-7 chr1 171441191 171441355 + 1.5 NA Intergenic Intergenic -44257 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 326.166-3 chr3 24796545 24797098 + 1.5 NA Intergenic Intergenic -32502 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 260-9 chr14 58395196 58395576 + 1.5 NA promoter-TSS (NM_207377) promoter-TSS (NM_207377) -544 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 215.833-10 chr15 73964740 73965123 + 1.5 NA Intergenic Intergenic 27364 NM_004809 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 198.5-11 chr12 122590627 122591178 + 1.5 NA intron (NM_014708, intron 41 of 63) intron (NM_014708, intron 41 of 63) 63653 NM_014708 9735 Hs.300559 NM_014708 ENSG00000184445 KNTC1 ROD kinetochore associated 1 protein-coding 306-9 chr2 138956542 138956839 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 59366 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 454.833-6 chr9 33309301 33309663 + 1.5 NA intron (NM_002504, intron 5 of 23) intron (NM_002504, intron 5 of 23) 18966 NM_002504 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 329-11 chr6 1612969 1613410 + 1.5 NA 3' UTR (NM_001453, exon 1 of 1) 3' UTR (NM_001453, exon 1 of 1) 3274 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 275.834-9 chr9 105413727 105413976 + 1.5 NA intron (NM_001330731, intron 15 of 15) L3|LINE|CR1 -34183 NM_001287191 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 208-17 chr18 3481747 3482035 + 1.5 NA Intergenic MER39|LTR|ERV1 15641 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 251-7 chr15 26260606 26260985 + 1.5 NA Intergenic Intergenic 144982 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 187.833 chr1 78960160 78960287 + 1.5 NA intron (NM_022159, intron 2 of 14) intron (NM_022159, intron 2 of 14) 46507 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 281.5-17 chr4 143564664 143564956 + 1.5 NA Intergenic Intergenic 5338 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 GUSB pseudogene 5 pseudo 311.667-4 chr12 124680741 124681041 + 1.5 NA Intergenic AluJo|SINE|Alu -113279 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 314-18 chr5 149950209 149950551 + 1.5 NA Intergenic Intergenic -5587 NM_000440 5145 Hs.567314 NM_000440 ENSG00000132915 PDE6A CGPR-A|PDEA|RP43 phosphodiesterase 6A protein-coding 175.5-6 chr10 23476609 23476870 + 1.5 NA Intergenic Zaphod3|DNA|hAT-Tip100 37470 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 314-4 chr14 69453560 69453889 + 1.5 NA intron (NM_001330185, intron 3 of 5) intron (NM_001330185, intron 3 of 5) -31004 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 169.167-31 chr7 54028581 54028963 + 1.5 NA Intergenic Intergenic -216841 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 493.667-4 chr4 11805578 11806306 + 1.5 NA Intergenic Intergenic 22764 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 189.167-11 chr11 123439348 123439486 + 1.5 NA intron (NM_001367421, intron 2 of 20) intron (NM_001367421, intron 2 of 20) 9148 NM_001354837 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 281.5-21 chr6 135448325 135448661 + 1.5 NA intron (NM_017651, intron 10 of 27) intron (NM_017651, intron 10 of 27) 49247 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 325.5-18 chr4 188214922 188215255 + 1.5 NA Intergenic Intergenic 75647 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 263.5-6 chr13 85422457 85422856 + 1.5 NA intron (NR_046989, intron 1 of 3) intron (NR_046989, intron 1 of 3) 59053 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 217.667-5 chr1 163535763 163536016 + 1.5 NA Intergenic MIR|SINE|MIR -112698 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 283-3 chr1 194739916 194740282 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 1348616 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 224.667-32 chr20 3855047 3855673 + 1.5 NA intron (NM_001206491, intron 2 of 5) HAL1M8|LINE|L1 8526 NM_020746 57506 Hs.570362 NM_020746 ENSG00000088888 MAVS CARDIF|IPS-1|IPS1|VISA mitochondrial antiviral signaling protein protein-coding 320.833-13 chrX 65986697 65987069 + 1.5 NA Intergenic Intergenic -31987 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 340.167-2 chr14 32073399 32073793 + 1.5 NA Intergenic Intergenic 3103 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 190.333-39 chr7 140439683 140439903 + 1.5 NA Intergenic MIR|SINE|MIR 35735 NM_001008749 401409 Hs.583545 NM_001008749 ENSG00000146955 RAB19 RAB19B RAB19, member RAS oncogene family protein-coding 279.5-16 chr4 6343781 6344053 + 1.5 NA intron (NM_001206994, intron 7 of 9) L1M5|LINE|L1 37951 NM_181876 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 196.333-17 chr17 44587416 44587666 + 1.5 NA Intergenic Intergenic 30057 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 280.333-27 chr7 144639104 144639440 + 1.5 NA intron (NM_001350889, intron 2 of 5) L1M5|LINE|L1 99626 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 293.5-13 chr2 74709232 74709558 + 1.5 NA Intergenic L1MDa|LINE|L1 55148 NM_001271661 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 421.333-7 chr3 88129822 88130254 + 1.5 NA intron (NM_001350135, intron 4 of 6) intron (NM_001350135, intron 4 of 6) 19828 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 194-5 chr1 186852570 186852861 + 1.5 NA intron (NM_024420, intron 1 of 17) MLT1A1|LTR|ERVL-MaLR 23766 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 272.167-22 chr9 13351678 13351982 + 1.5 NA Intergenic Intergenic -72117 NM_001330637 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 228.667-48 chr7 82815757 82816033 + 1.5 NA intron (NM_033026, intron 20 of 24) intron (NM_033026, intron 20 of 24) 346989 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 176.167-23 chr2 64734706 64734890 + 1.5 NA Intergenic Intergenic -80885 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 308.667-8 chr2 193219937 193220323 + 1.5 NA Intergenic L2c|LINE|L2 470285 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 275.667-16 chr4 60948880 60949158 + 1.5 NA Intergenic Intergenic 26400 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 220.167-28 chr7 57301740 57302013 + 1.5 NA Intergenic L2a|LINE|L2 -79702 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 317.167 chr1 166877312 166877749 + 1.5 NA Intergenic Intergenic -1266 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 212.167-17 chr9 82517593 82517834 + 1.5 NA Intergenic Intergenic 528941 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 240.5-32 chr9 101401124 101401328 + 1.5 NA intron (NM_197977, intron 3 of 3) intron (NM_197977, intron 3 of 3) 2372 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 186-26 chr20 52039480 52039727 + 1.5 NA Intergenic Intergenic 65881 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 263-13 chr7 80413249 80413472 + 1.5 NA Intergenic Intergenic -38921 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 259.333 chr1 63742473 63742763 + 1.5 NA Intergenic Intergenic -31399 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 272.167-16 chr3 119956448 119956684 + 1.5 NA intron (NM_002093, intron 2 of 11) Tigger4a|DNA|TcMar-Tigger 128082 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 220.333-3 chr1 238699994 238700245 + 1.5 NA Intergenic Intergenic -214102 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 314.166-4 chr18 4759625 4759967 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -304489 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 285-12 chr20 45785637 45785983 + 1.5 NA intron (NM_080614, intron 4 of 6) intron (NM_080614, intron 4 of 6) 6073 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 167.334 chr1 234567999 234568150 + 1.5 NA Intergenic Intergenic -36295 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 307.167-12 chr18 60346389 60346720 + 1.5 NA Intergenic L1PB2|LINE|L1 26221 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 312.333-2 chr1 233194493 233194828 + 1.5 NA intron (NM_014801, intron 15 of 33) L1ME1|LINE|L1 101065 NM_001328607 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 304.833-6 chr14 35122105 35122493 + 1.5 NA promoter-TSS (NM_001256681) promoter-TSS (NM_001256681) 243 NM_001305155 55012 Hs.530712 NM_017917 ENSG00000092020 PPP2R3C C14orf10|G4-1|G5pr|GDRM|SPGF36 protein phosphatase 2 regulatory subunit B''gamma protein-coding 221.5-17 chr4 63006258 63006428 + 1.5 NA Intergenic Intergenic -844578 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 464.167-4 chr2 228048820 228049320 + 1.5 NA intron (NM_030623, intron 3 of 10) MIR|SINE|MIR 132575 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 268-29 chr3 175076679 175077030 + 1.5 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 38388 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 248.5-28 chr5 6990171 6990453 + 1.5 NA Intergenic Intergenic -162391 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 310-14 chr17 29705855 29706166 + 1.5 NA intron (NM_033389, intron 2 of 14) L2a|LINE|L2 55422 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 227.5-5 chr1 64979340 64979617 + 1.5 NA TTS (NR_119383) TTS (NR_119383) -12542 NM_001320923 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 334.167-3 chr11 103316254 103316677 + 1.5 NA intron (NM_001377, intron 79 of 88) intron (NM_001377, intron 79 of 88) 207039 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 477.333-7 chr19 4639039 4639380 + 1.5 NA promoter-TSS (NM_001167942) promoter-TSS (NM_001167942) -307 NM_152362 126282 Hs.465643 NM_152362 ENSG00000185361 TNFAIP8L1 TIPE1 TNF alpha induced protein 8 like 1 protein-coding 330.334-4 chr7 80391924 80392683 + 1.5 NA Intergenic Intergenic -17864 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 247-13 chr15 39721384 39721587 + 1.5 NA intron (NM_152597, intron 9 of 11) intron (NM_152597, intron 9 of 11) 61356 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 182.333-18 chr3 27148362 27148740 + 1.5 NA intron (NM_001304384, intron 10 of 16) intron (NM_001304384, intron 10 of 16) 67972 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 283.834-9 chr7 150428793 150429013 + 1.5 NA Intergenic Intergenic -4751 NR_034033 285972 Hs.647110 NR_034033 ENSG00000242258 LINC00996 - long intergenic non-protein coding RNA 996 ncRNA 242.667-14 chr2 19961208 19961491 + 1.5 NA intron (NM_020779, intron 10 of 26) HSMAR2|DNA|TcMar-Mariner 28756 NM_020779 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 353-13 chr4 79041834 79042477 + 1.5 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 70407 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 292.166-6 chr5 8906767 8907209 + 1.5 NA Intergenic Intergenic 67256 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 363.833-7 chr5 100521978 100522367 + 1.5 NA Intergenic L1PB1|LINE|L1 -13202 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 348.5-12 chr14 21939154 21939609 + 1.5 NA Intergenic L1PA17|LINE|L1 -268364 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 327.667-7 chr19 47712909 47713292 + 1.5 NA promoter-TSS (NM_014601) promoter-TSS (NM_014601) -322 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 381.333-7 chr4 30851653 30852067 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 131491 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 271.833-17 chr8 140288164 140288375 + 1.5 NA intron (NM_001160372, intron 12 of 22) AluJo|SINE|Alu 169475 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 263.167-13 chr4 40969928 40970151 + 1.5 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -112847 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 583.833-3 chr5 43065340 43066165 + 1.5 NA non-coding (NR_034127, exon 1 of 1) non-coding (NR_034127, exon 1 of 1) 1219 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 271.667-15 chr2 215379368 215379565 + 1.5 NA intron (NM_212476, intron 31 of 43) intron (NM_212476, intron 31 of 43) 56602 NM_212478 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF fibronectin 1 protein-coding 270.667-7 chr16 75096735 75096935 + 1.5 NA intron (NM_032268, intron 2 of 4) intron (NM_032268, intron 2 of 4) 19937 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 274.667-20 chr4 96438377 96438717 + 1.5 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 127844 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 171.5-49 chr9 73348227 73348435 + 1.5 NA Intergenic Intergenic 196466 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 289-6 chr11 102996185 102996490 + 1.5 NA Intergenic Intergenic -40605 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 317.167-3 chr11 63134246 63134559 + 1.5 NA intron (NM_173586, intron 2 of 3) L2b|LINE|L2 9819 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 205-19 chr3 40365512 40365719 + 1.5 NA Intergenic L2a|LINE|L2 -21569 NM_001248 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 227.834-2 chr14 70686336 70686504 + 1.5 NA Intergenic MIRb|SINE|MIR -12278 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 242.667-13 chr19 46047256 46047479 + 1.5 NA intron (NR_163177, intron 2 of 5) L1PA10|LINE|L1 -6351 NM_001002923 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 220.333-20 chr20 56029120 56029465 + 1.5 NA Intergenic Intergenic -23773 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 196.5-31 chr4 37760355 37760592 + 1.5 NA Intergenic Intergenic -66213 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 602.667-4 chr4 99405325 99405973 + 1.5 NA Intergenic Intergenic 29485 NM_001166504 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 218.5-28 chr4 162525172 162525448 + 1.5 NA Intergenic Intergenic -361276 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 328.167-6 chr5 129812819 129813234 + 1.5 NA Intergenic FordPrefect|DNA|hAT-Tip100 64932 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 409.167-3 chr14 53151511 53151987 + 1.5 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 1574 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 217-16 chr2 137866828 137867170 + 1.5 NA Intergenic Intergenic 60933 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 339.501 chr5 162152857 162153198 + 1.5 NA intron (NM_198904, intron 9 of 9) intron (NM_198904, intron 9 of 9) 85385 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 501.5-4 chr2 224675040 224675664 + 1.5 NA Intergenic L2c|LINE|L2 -89955 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 232.833-4 chr1 111709756 111710029 + 1.5 NA intron (NM_001370216, intron 7 of 7) L1ME3|LINE|L1 29503 NM_019099 55924 Hs.193406 NM_019099 ENSG00000197852 INKA2 C1orf183|FAM212B inka box actin regulator 2 protein-coding 220-6 chr12 16915127 16915367 + 1.5 NA Intergenic L1MA3|LINE|L1 -73500 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 239.5-29 chr3 190174961 190175218 + 1.5 NA Intergenic Intergenic -52652 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 251-8 chr16 10314774 10314987 + 1.5 NA Intergenic Intergenic -71181 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 294.167-10 chr4 73028338 73028590 + 1.5 NA Intergenic Intergenic 41252 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 308.166-7 chr22 28235509 28235802 + 1.5 NA intron (NM_001145418, intron 5 of 22) L1M5|LINE|L1 -224214 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 370-14 chr4 56809951 56810377 + 1.5 NA exon (NM_001271718, exon 4 of 4) exon (NM_001271718, exon 4 of 4) 11309 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 199.5-17 chr15 98552716 98552898 + 1.5 NA Intergenic Intergenic -38471 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 507.001 chr11 69643236 69644110 + 1.5 NA intron (NM_053056, intron 2 of 4) CpG-4621 2568 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 278-12 chr17 14926814 14927105 + 1.5 NA Intergenic Intergenic -87846 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 273-17 chr22 24363195 24363404 + 1.5 NA exon (NM_001254732, exon 11 of 15) exon (NM_001254732, exon 11 of 15) 21191 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 297-26 chrX 30513505 30513726 + 1.5 NA Intergenic Charlie23a|DNA|hAT-Charlie 64151 NM_025159 80231 Hs.665009 NM_025159 ENSG00000120280 CXorf21 - chromosome X open reading frame 21 protein-coding 282.5-17 chr7 21241620 21241954 + 1.5 NA Intergenic Intergenic -186296 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 181.5-19 chr15 47194710 47194950 + 1.5 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 10741 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 175-46 chr5 27592323 27592519 + 1.5 NA Intergenic Intergenic 120129 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 682.334-2 chr9 69027773 69028451 + 1.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger -7640 NM_181425 2395 Hs.20685 NM_000144 ENSG00000165060 FXN CyaY|FA|FARR|FRDA|X25 frataxin protein-coding 312-16 chr3 29807625 29808038 + 1.5 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 126325 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 477.667-3 chr5 4116369 4117026 + 1.5 NA Intergenic Intergenic 520865 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 258-8 chr11 68779870 68780142 + 1.5 NA intron (NM_001031847, intron 12 of 18) intron (NM_001031847, intron 12 of 18) -28486 NM_001039656 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 231.5-21 chr2 165719284 165719488 + 1.5 NA Intergenic Arthur1|DNA|hAT-Tip100 74861 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 227.667-41 chr8 111151766 111152079 + 1.5 NA intron (NR_125418, intron 1 of 3) L1PA16|LINE|L1 84281 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 261-23 chr7 132833435 132833706 + 1.5 NA intron (NR_133671, intron 7 of 10) intron (NR_133671, intron 7 of 10) 74600 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 353.5-13 chr3 119506671 119507020 + 1.5 NA intron (NM_016589, intron 4 of 6) intron (NM_016589, intron 4 of 6) 8298 NM_016589 51300 Hs.477287 NM_016589 ENSG00000113845 TIMMDC1 C3orf1|MC1DN31 translocase of inner mitochondrial membrane domain containing 1 protein-coding 419.5-3 chr12 10311267 10311706 + 1.5 NA exon (NM_007334, exon 3 of 5) exon (NM_007334, exon 3 of 5) 3616 NM_002262 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 540.334-2 chr10 60099011 60099724 + 1.5 NA intron (NM_001204403, intron 29 of 43) L2b|LINE|L2 41649 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 400.667-5 chr2 12258813 12259278 + 1.5 NA intron (NR_110196, intron 3 of 5) L1ME4b|LINE|L1 59915 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 506.501-2 chr16 1705676 1706158 + 1.5 NA promoter-TSS (NM_001318852) promoter-TSS (NM_001318852) -266 NM_001318852 23162 Hs.207763 NM_015133 ENSG00000138834 MAPK8IP3 JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd mitogen-activated protein kinase 8 interacting protein 3 protein-coding 435.667-3 chr2 176637302 176637883 + 1.5 NA promoter-TSS (NR_040001) promoter-TSS (NR_040001) -18 NR_040001 375295 Hs.636452 NR_040001 LINC01116 TALNEC2 long intergenic non-protein coding RNA 1116 ncRNA 253-12 chr2 64092305 64092495 + 1.5 NA TTS (NM_020651) TTS (NM_020651) 52020 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 359.166-4 chr5 62150761 62151368 + 1.5 NA Intergenic Intergenic -155098 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 284-11 chr17 58107132 58107632 + 1.5 NA Intergenic L1MD2|LINE|L1 23963 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 188.833-6 chr11 60428307 60428564 + 1.5 NA Intergenic Intergenic -1137 NM_023945 64232 Hs.178066 NM_023945 ENSG00000166930 MS4A5 CD20-L2|CD20L2|TETM4 membrane spanning 4-domains A5 protein-coding 282.5-19 chr8 77184545 77184765 + 1.5 NA Intergenic Intergenic -183611 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 256.167-22 chr8 47357187 47357493 + 1.5 NA intron (NR_104581, intron 5 of 16) intron (NR_104581, intron 5 of 16) 96402 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 198.167-30 chr8 116242102 116242237 + 1.5 NA intron (NR_046215, intron 4 of 13) HAL1|LINE|L1 82890 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 296.333-26 chr9 136549766 136550087 + 1.5 NA TTS (NR_121577) TTS (NR_121577) 2084 NR_121577 101928483 Hs.170035 NR_121577 NALT1 LINC01573|MIR4674HG|NALT|TCONS_l2_00029132 NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1 ncRNA 226.5-21 chr17 70141724 70141923 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR 27579 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 237.333-36 chr7 84058347 84058622 + 1.5 NA intron (NM_006080, intron 5 of 16) intron (NM_006080, intron 5 of 16) 136305 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 273-6 chr11 46093137 46093487 + 1.5 NA intron (NR_147890, intron 1 of 18) intron (NR_147890, intron 1 of 18) 27507 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 258.333-16 chr6 53481660 53481840 + 1.5 NA Intergenic Intergenic 63351 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 333.833-9 chr3 152224051 152224670 + 1.5 NA Intergenic Intergenic -18931 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 191.667-25 chr2 66585062 66585246 + 1.5 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 11124 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 371-12 chr6 62850371 62850831 + 1.5 NA Intergenic SATR1|Satellite|Satellite 469376 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 231.5-23 chr20 4946153 4946424 + 1.5 NA intron (NM_005116, intron 2 of 16) intron (NM_005116, intron 2 of 16) 55222 NM_005116 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 232-37 chr5 100615736 100615991 + 1.5 NA Intergenic Intergenic 80489 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 280.667-17 chr9 29401490 29401842 + 1.5 NA Intergenic Intergenic -188065 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 171.5-5 chr10 35117852 35118136 + 1.5 NA Intergenic L1MC1|LINE|L1 -8847 NM_001881 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 232.5-15 chr2 113086480 113086744 + 1.5 NA Intergenic Intergenic 14294 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 357.5-2 chr11 11265904 11266322 + 1.5 NA Intergenic Intergenic 87137 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 386.833-6 chr8 138380020 138380321 + 1.5 NA intron (NM_001362965, intron 1 of 19) AluSx1|SINE|Alu 117091 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 185.833-24 chr5 26540775 26541118 + 1.5 NA Intergenic MamRep38|DNA|hAT 497640 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 221-31 chr6 56603453 56603761 + 1.5 NA intron (NM_001144770, intron 36 of 94) intron (NM_001144770, intron 36 of 94) 39282 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 233.833-5 chr12 1868704 1868951 + 1.5 NA intron (NM_172364, intron 18 of 37).2 MER2|DNA|TcMar-Tigger 48262 NM_001039029 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 194.5 chr1 42655648 42656072 + 1.5 NA 3' UTR (NM_001355224, exon 23 of 23) 3' UTR (NM_001355224, exon 23 of 23) -2563 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 294.5-5 chr11 13335460 13335688 + 1.5 NA intron (NM_001351821, intron 3 of 19) MER20B|DNA|hAT-Charlie 57847 NM_001351821 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 354-7 chr17 39042303 39042689 + 1.5 NA intron (NR_033753, intron 2 of 4) intron (NR_033753, intron 2 of 4) 12590 NR_033753 342666 Hs.129645 NM_198502 ENSG00000214553 LRRC37A11P LRRC37F leucine rich repeat containing 37 member A11, pseudogene pseudo 231.833-22 chrX 42729349 42729667 + 1.5 NA Intergenic L1ME1|LINE|L1 48655 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 420.5-8 chr22 24357501 24358247 + 1.5 NA intron (NM_015330, intron 11 of 16) L1MEb|LINE|L1 15766 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 241.5-15 chr4 42414802 42415086 + 1.5 NA intron (NM_001105529, intron 34 of 35) intron (NM_001105529, intron 34 of 35) 17456 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 360.334 chr16 69382634 69383060 + 1.5 NA intron (NM_005652, intron 3 of 9) MLT1F2|LTR|ERVL-MaLR 3160 NM_005652 7014 Hs.63335 NM_005652 ENSG00000132604 TERF2 TRBF2|TRF2 telomeric repeat binding factor 2 protein-coding 484.166-6 chrX 13506416 13507004 + 1.5 NA Intergenic Intergenic -62891 NM_001167890 25975 Hs.12844 NM_015507 ENSG00000198759 EGFL6 MAEG|W80 EGF like domain multiple 6 protein-coding 404.5-5 chr11 122460282 122460758 + 1.5 NA Intergenic L1MEc|LINE|L1 -37649 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 448.5-4 chr14 24296901 24297455 + 1.5 NA intron (NM_138452, intron 2 of 8).2 L2b|LINE|L2 2282 NM_138452 115817 Hs.348350 NM_138452 ENSG00000157379 DHRS1 SDR19C1 dehydrogenase/reductase 1 protein-coding 164.833-6 chr14 29141124 29141288 + 1.5 NA Intergenic Intergenic -355419 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 416.333-7 chr8 117618258 117618950 + 1.5 NA Intergenic Intergenic 97891 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 371.833-3 chr14 71088253 71088638 + 1.5 NA intron (NM_014982, intron 29 of 35) intron (NM_014982, intron 29 of 35) 180986 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 340-18 chr7 50760328 50760565 + 1.5 NA intron (NM_001001555, intron 1 of 16) L1M5|LINE|L1 22450 NM_001350814 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 398-19 chr9 26857747 26858191 + 1.5 NA intron (NM_001167575, intron 5 of 5) intron (NM_001167575, intron 5 of 5) 34833 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 171.5-41 chr7 56175789 56176025 + 1.5 NA Intergenic Intergenic -59490 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 413.667-6 chr2 233487860 233488318 + 1.5 NA intron (NM_001365479, intron 28 of 31) intron (NM_001365479, intron 28 of 31) 77484 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 457.5-4 chr4 141293843 141294522 + 1.5 NA Intergenic Intergenic 38435 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 341.833-6 chr9 100099657 100100117 + 1.5 NA promoter-TSS (NM_015051) promoter-TSS (NM_015051) 644 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 256.667-11 chr16 48306092 48306308 + 1.5 NA intron (NM_031490, intron 11 of 14) intron (NM_031490, intron 11 of 14) -58661 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 229.667-21 chr20 54968222 54968507 + 1.5 NA Intergenic MER97c|DNA|hAT-Tip100 -454679 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 275.5-21 chr3 123361134 123361441 + 1.5 NA intron (NM_183357, intron 1 of 20) intron (NM_183357, intron 1 of 20) 55055 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 207.667-37 chr5 63881053 63881273 + 1.5 NA Intergenic L1MA7|LINE|L1 81129 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 452.333-2 chr7 74199513 74200044 + 1.5 NA Intergenic Intergenic 8580 NR_030321 693175 NR_030321 ENSG00000207741 MIR590 MIRN590|hsa-mir-590|mir-590 microRNA 590 ncRNA 333.5-21 chr8 56834213 56834517 + 1.5 NA Intergenic Intergenic 159502 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 364.833-2 chr3 49802297 49803214 + 1.5 NA promoter-TSS (NM_001366281) promoter-TSS (NM_001366281) -506 NM_001366281 389119 Hs.86674 NM_203370 ENSG00000185614 INKA1 C3orf54|FAM212A inka box actin regulator 1 protein-coding 248.5-37 chr7 38927644 38927879 + 1.5 NA Intergenic Intergenic -18561 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 293-7 chr11 70200340 70200545 + 1.5 NA Intergenic LTR22C2|LTR|ERVK -2721 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 345.833-5 chr14 81060729 81061137 + 1.5 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 105312 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 223.667-24 chr16 64059807 64059989 + 1.5 NA Intergenic L1MC5|LINE|L1 1062165 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 212.667-44 chr7 9201677 9201880 + 1.5 NA Intergenic Intergenic -432492 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 275.167-14 chr17 12522898 12523196 + 1.5 NA Intergenic Intergenic -26921 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 167.333-38 chr3 99418073 99418349 + 1.5 NA Intergenic L2c|LINE|L2 -220383 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 308.667-17 chr7 100132515 100132874 + 1.5 NA Intergenic AluSz|SINE|Alu 5727 NM_203397 255374 Hs.632319 NM_203397 ENSG00000214309 MBLAC1 - metallo-beta-lactamase domain containing 1 protein-coding 305.167-13 chr7 108897666 108897961 + 1.5 NA Intergenic Intergenic -13226 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 279.333-8 chr14 105090637 105090890 + 1.5 NA Intergenic Intergenic -3384 NR_110546 102723354 Hs.569410 NR_110546 LINC02298 - long intergenic non-protein coding RNA 2298 ncRNA 164-31 chr2 22303189 22303366 + 1.5 NA Intergenic Intergenic -233202 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 234.333-37 chr8 89623629 89623963 + 1.5 NA Intergenic Intergenic 133915 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 218.167-15 chr20 63300128 63300392 + 1.5 NA intron (NM_020882, intron 3 of 35) L1MEd|LINE|L1 7074 NM_020882 57642 Hs.271285 NM_020882 ENSG00000101203 COL20A1 - collagen type XX alpha 1 chain protein-coding 221-14 chr16 76799121 76799275 + 1.5 NA Intergenic Intergenic -69738 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 408.833-5 chr22 24755554 24756110 + 1.5 NA non-coding (NR_045648, exon 7 of 22) non-coding (NR_045648, exon 7 of 22) -8669 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 244.5-5 chr12 46667562 46667790 + 1.5 NA Intergenic MER46C|DNA|TcMar-Tigger 158321 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 251.667-37 chr8 125997445 125997812 + 1.5 NA Intergenic Intergenic -46431 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 417.667-2 chr11 107916367 107917110 + 1.5 NA Intergenic LTR1A1|LTR|ERV1 -11710 NM_017516 54734 Hs.354906 NM_017516 ENSG00000179331 RAB39A RAB39 RAB39A, member RAS oncogene family protein-coding 345-25 chr7 124275575 124276239 + 1.5 NA Intergenic Intergenic 76189 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 227.5-27 chr4 93218357 93218521 + 1.5 NA intron (NM_001286838, intron 5 of 14) AluJb|SINE|Alu -610314 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 363-10 chr9 14878483 14878770 + 1.5 NA intron (NM_001370065, intron 1 of 7) MADE1|DNA|TcMar-Mariner 31802 NR_163241 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 221.833-22 chr8 65416915 65417093 + 1.5 NA Intergenic Intergenic 145662 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 175 chr1 8875758 8875977 + 1.5 NA intron (NM_001353346, intron 1 of 11) FLAM_C|SINE|Alu 2819 NM_001201483 2023 Hs.517145 NM_001428 ENSG00000074800 ENO1 ENO1L1|HEL-S-17|MPB1|NNE|PPH enolase 1 protein-coding 252-21 chr15 26438425 26438672 + 1.5 NA Intergenic Intergenic 190542 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 454.667-2 chr10 46992688 46993056 + 1.5 NA intron (NM_001042357, intron 9 of 10) L1P4a|LINE|L1 81150 NM_001042361 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 237.667-9 chr15 35813478 35813908 + 1.5 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -113163 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 297.5-13 chr19 34831097 34831313 + 1.5 NA intron (NR_033982, intron 2 of 5) L1M4|LINE|L1 1664 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 476.833-2 chr12 56046848 56047531 + 1.5 NA Intergenic AluSx|SINE|Alu 5271 NM_001029 6231 Hs.447562 NM_001029 ENSG00000197728 RPS26 DBA10|S26|eS26 ribosomal protein S26 protein-coding 186.667-59 chr7 121540739 121541026 + 1.5 NA Intergenic Intergenic -144514 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 191-31 chr20 22334265 22334553 + 1.5 NA Intergenic Intergenic -51608 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 809.833-2 chr20 40962801 40963818 + 1.5 NA Intergenic MIRb|SINE|MIR -17404 NR_145524 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 186.333-35 chr6 54724729 54725018 + 1.5 NA Intergenic Intergenic -121898 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 339.499 chr2 164146117 164146553 + 1.5 NA Intergenic Intergenic -410327 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 353.833-4 chr10 31842184 31842790 + 1.5 NA intron (NM_001270695, intron 7 of 18) MamRTE1|LINE|RTE-BovB 66439 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 302-12 chr20 17080665 17080907 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -145321 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 407.667-6 chr17 28921350 28921745 + 1.5 NA intron (NM_001033561, intron 5 of 14) intron (NM_001033561, intron 5 of 14) -4728 NR_110803 101927018 Hs.665702 NR_110803 ENSG00000265845 LOC101927018 - uncharacterized LOC101927018 ncRNA 292-18 chr4 54537034 54537366 + 1.5 NA Intergenic L1ME3G|LINE|L1 69931 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 210.833-4 chr10 65086472 65086818 + 1.5 NA Intergenic Intergenic -162127 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 284.167-11 chr20 17293116 17293368 + 1.5 NA intron (NM_002594, intron 2 of 11) L1M5|LINE|L1 66202 NM_001201529 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 246.5-8 chr14 24431530 24431979 + 1.5 NA exon (NM_001290257, exon 3 of 8) exon (NM_001290257, exon 3 of 8) 1800 NM_001290257 23351 Hs.713590 NM_015299 ENSG00000100441 KHNYN KIAA0323 KH and NYN domain containing protein-coding 265.334-8 chr8 145005485 145005735 + 1.5 NA non-coding (NR_026974, exon 1 of 1) non-coding (NR_026974, exon 1 of 1) -2711 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 241.167 chr1 115672958 115673283 + 1.5 NA intron (NM_001172411, intron 4 of 7) intron (NM_001172411, intron 4 of 7) 30491 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 342.5-9 chr8 136041179 136041550 + 1.5 NA Intergenic MIRb|SINE|MIR -489434 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 164.333-4 chr1 109069690 109069836 + 1.5 NA intron (NM_005645, intron 2 of 3) intron (NM_005645, intron 2 of 3) 6240 NM_005645 6884 Hs.632426 NM_005645 ENSG00000197780 TAF13 MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18 TATA-box binding protein associated factor 13 protein-coding 194.833-5 chr11 117386413 117386720 + 1.5 NA intron (NM_001271933, intron 13 of 31) intron (NM_001271933, intron 13 of 31) 58712 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 255.833-9 chr16 17136167 17136446 + 1.5 NA intron (NM_022166, intron 8 of 11) MIRb|SINE|MIR 1802 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 252.833-17 chr7 3304764 3304951 + 1.5 NA intron (NM_152744, intron 1 of 44) MER5B|DNA|hAT-Charlie 3605 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 263-14 chr8 74741103 74741364 + 1.5 NA intron (NR_033830, intron 4 of 5) Tigger17c|DNA|TcMar-Tigger 35540 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 187-38 chr6 53962709 53962859 + 1.5 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 32802 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 197.5-21 chr22 41917789 41917923 + 1.5 NA Intergenic Intergenic -2761 NM_001207020 440829 Hs.526704 NM_001207020 ENSG00000234965 SHISA8 C22orf17|Orf26 shisa family member 8 protein-coding 185-5 chr1 172746604 172746770 + 1.5 NA Intergenic Intergenic 87584 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 350.667-12 chr22 35299297 35299729 + 1.5 NA promoter-TSS (NM_005488) promoter-TSS (NM_005488) 238 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 173-42 chr8 137193746 137193954 + 1.5 NA Intergenic L1ME2|LINE|L1 219738 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 308.5-25 chr8 19805335 19805685 + 1.5 NA Intergenic AluSx1|SINE|Alu -11639 NM_001353510 55174 Hs.512627 NM_018142 ENSG00000104613 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 253.5-17 chr20 20790781 20791178 + 1.5 NA Intergenic Intergenic -78335 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 338-3 chr10 91496101 91496490 + 1.5 NA exon (NM_001348365, exon 15 of 21) exon (NM_001348365, exon 15 of 21) 86010 NM_173497 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 361-12 chr6 74915115 74915550 + 1.5 NA Intergenic Intergenic 213450 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 329.333-7 chr17 55494092 55494670 + 1.5 NA Intergenic Intergenic -72546 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 210.667-18 chr15 60374693 60374899 + 1.5 NA intron (NM_001002857, intron 4 of 13) intron (NM_001002857, intron 4 of 13) 23190 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 358.5-14 chr8 128991047 128991414 + 1.5 NA Intergenic Intergenic -25229 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 300.5-18 chr4 163206247 163206715 + 1.5 NA Intergenic L2a|LINE|L2 -39591 NM_138386 92345 Hs.129095 NM_138386 ENSG00000145414 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 241.834 chr1 51887724 51888040 + 1.5 NA Intergenic Intergenic -8945 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 258-32 chr7 30354322 30354579 + 1.5 NA intron (NM_147128, intron 2 of 4) intron (NM_147128, intron 2 of 4) -15600 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 284-21 chr21 36086945 36087216 + 1.5 NA intron (NR_040084, intron 2 of 3) L1M1|LINE|L1 17056 NM_001286789 873 Hs.88778 NM_001757 ENSG00000159228 CBR1 CBR|SDR21C1|hCBR1 carbonyl reductase 1 protein-coding 208.5-34 chr4 134174992 134175231 + 1.5 NA Intergenic Intergenic 26678 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 226.167-17 chr3 32900406 32900631 + 1.5 NA Intergenic Intergenic -51126 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 193.166 chr15 81543411 81543650 + 1.5 NA Intergenic L1ME2|LINE|L1 -169317 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 234.333-42 chrX 137402406 137402697 + 1.5 NA Intergenic Intergenic -163576 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 208.667-19 chr16 5683699 5683885 + 1.5 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 51325 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 777-2 chr4 10582011 10582791 + 1.5 NA intron (NM_052964, intron 4 of 18) intron (NM_052964, intron 4 of 18) 102367 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 249-23 chr3 46846344 46846549 + 1.5 NA Intergenic Intergenic -12351 NR_160554 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 321.334-3 chr3 14637285 14637696 + 1.5 NA Intergenic L1MB7|LINE|L1 -14256 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 531.5 chr10 15867390 15867958 + 1.5 NA Intergenic MER44A|DNA|TcMar-Tigger -7141 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 186.333-16 chr14 65058524 65058697 + 1.5 NA intron (NM_002028, intron 11 of 11) L1ME3Cz|LINE|L1 13922 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 222-27 chr8 54544046 54544271 + 1.5 NA Intergenic L1ME1|LINE|L1 -71938 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 259-36 chr7 9426173 9426413 + 1.5 NA Intergenic Intergenic -207977 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 381.5-5 chr2 12992486 12992871 + 1.5 NA intron (NR_038434, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 14335 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 370-11 chr3 16060480 16060831 + 1.5 NA Intergenic Intergenic -114025 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 364.667-16 chr5 59893763 59894116 + 1.5 NA promoter-TSS (NM_001104631) promoter-TSS (NM_001104631) -213 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 269.5-12 chr2 84495498 84495688 + 1.5 NA Intergenic Intergenic -20862 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 187-52 chrX 70762276 70762530 + 1.5 NA intron (NM_001003811, intron 10 of 30) L1MA2|LINE|L1 83892 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 381-12 chr3 157121952 157122215 + 1.5 NA intron (NR_034007, intron 1 of 3) intron (NR_034007, intron 1 of 3) 919 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 324.5-5 chr22 22060429 22060715 + 1.5 NA Intergenic Intergenic -16638 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 238.333-14 chr12 41347274 41347475 + 1.5 NA intron (NM_001164595, intron 3 of 9) L1MB8|LINE|L1 -90365 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 184.667-38 chr4 96588373 96588559 + 1.5 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 277763 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 240.5-7 chr15 34776220 34776582 + 1.5 NA intron (NR_120329, intron 1 of 2) intron (NR_120329, intron 1 of 2) 19148 NM_005159 70 Hs.118127 NM_005159 ENSG00000159251 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin alpha cardiac muscle 1 protein-coding 216.833-23 chr6 134534713 134535128 + 1.5 NA intron (NR_125856, intron 1 of 2) ERVL-E-int|LTR|ERVL 5085 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 226-24 chr20 656199 656454 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -3126 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 217.833-21 chr9 18454902 18455152 + 1.5 NA Intergenic Intergenic -19126 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 240.833-10 chr3 132440640 132440945 + 1.5 NA intron (NM_001329126, intron 2 of 56) Tigger3a|DNA|TcMar-Tigger 23290 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 265.667-6 chr11 13135458 13135873 + 1.5 NA Intergenic Intergenic 126349 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 220.5-11 chr13 97344501 97344756 + 1.5 NA intron (NM_144778, intron 4 of 8) intron (NM_144778, intron 4 of 8) -89541 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 232.167-15 chr4 89626664 89626947 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -209596 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 224.333-15 chr17 69640118 69640353 + 1.5 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 46248 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 241-22 chr4 70116598 70116894 + 1.5 NA Intergenic Intergenic -16858 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 267-11 chr12 76031642 76031896 + 1.5 NA promoter-TSS (NM_007350) promoter-TSS (NM_007350) 7 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 179-7 chr11 16190123 16190320 + 1.5 NA intron (NM_033326, intron 4 of 15) intron (NM_033326, intron 4 of 15) 166325 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 182.834-3 chr15 71651846 71652149 + 1.5 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 39542 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 270.833-6 chr15 49627847 49628360 + 1.5 NA intron (NM_020234, intron 3 of 5) Tigger3b|DNA|TcMar-Tigger 7055 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 250.167-5 chr12 30457609 30457935 + 1.5 NA Intergenic Intergenic 219472 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 393.833-2 chr11 72752526 72753113 + 1.5 NA promoter-TSS (NM_001040118) promoter-TSS (NM_001040118) -430 NM_001040118 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 195-13 chr14 65242119 65242292 + 1.5 NA Intergenic Intergenic -19858 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 253.333-6 chr13 32397878 32398077 + 1.5 NA intron (NM_000059, intron 26 of 26) intron (NM_000059, intron 26 of 26) 30153 NM_001353630 90634 Hs.732118 NM_052818 ENSG00000139597 N4BP2L1 CG018 NEDD4 binding protein 2 like 1 protein-coding 312.167-6 chr20 47750771 47751083 + 1.5 NA intron (NM_198596, intron 2 of 20) L2a|LINE|L2 35137 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 387.499 chr2 88707093 88707559 + 1.5 NA intron (NM_144563, intron 3 of 8) intron (NM_144563, intron 3 of 8) 15653 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 314.167-4 chr11 86430112 86430360 + 1.5 NA Intergenic Intergenic 55349 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 313.667-14 chr8 22157426 22157695 + 1.5 NA promoter-TSS (NM_139278) promoter-TSS (NM_139278) -754 NM_139278 203190 Hs.33470 NM_139278 ENSG00000168481 LGI3 LGIL4 leucine rich repeat LGI family member 3 protein-coding 191.5-52 chr9 137445239 137445674 + 1.5 NA Intergenic Intergenic -4007 NM_001033113 377841 Hs.512562 NM_198585 ENSG00000188833 ENTPD8 E-NTPDase|GLSR2492|NTPDase-8|UNQ2492 ectonucleoside triphosphate diphosphohydrolase 8 protein-coding 204.833-14 chr2 96172764 96173280 + 1.5 NA Intergenic AluSg4|SINE|Alu -27582 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 339.167-10 chr3 79314626 79314880 + 1.5 NA intron (NM_002941, intron 2 of 30) L2a|LINE|L2 -96974 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 171.834-5 chr4 106593745 106593970 + 1.5 NA Intergenic Intergenic 160233 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 196.833-12 chr19 13025747 13025922 + 1.5 NA intron (NM_001365984, intron 1 of 9) intron (NM_001365984, intron 1 of 9) 1055 NM_001365984 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 284-7 chr14 43393901 43394613 + 1.5 NA Intergenic (ACAT)n|Simple_repeat|Simple_repeat 1113026 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 359.833-3 chr22 25778094 25778826 + 1.5 NA intron (NM_001318245, intron 8 of 43) MIR|SINE|MIR 36272 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 353.167 chr10 52486740 52487224 + 1.5 NA Intergenic Intergenic -16449 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 173.833-24 chr4 33892188 33892597 + 1.5 NA Intergenic Intergenic 147501 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 288.167-22 chr8 126150591 126150881 + 1.5 NA Intergenic L1PA16|LINE|L1 -174759 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 276.667-19 chr4 62460251 62460574 + 1.5 NA Intergenic MER92B|LTR|ERV1 -298647 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 237-33 chr5 108307491 108307666 + 1.5 NA intron (NM_001163315, intron 4 of 8) AluJr|SINE|Alu 74520 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 167-10 chr13 86870329 86870510 + 1.5 NA Intergenic Intergenic -41501 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 356-2 chr1 29529280 29529671 + 1.5 NA Intergenic L1MEc|LINE|L1 -179361 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 251.167-18 chr6 133840070 133840541 + 1.5 NA intron (NR_027030, intron 2 of 2) L1M5|LINE|L1 19158 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 339.5-9 chr20 10467003 10467347 + 1.5 NA intron (NM_001009608, intron 2 of 7) MIR1_Amn|SINE|MIR 31870 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 315.833-9 chr4 74184087 74184376 + 1.5 NA intron (NM_001351314, intron 5 of 9) L1MEc|LINE|L1 26113 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 232.5-18 chr20 49345004 49345379 + 1.5 NA Intergenic Intergenic 64508 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 214-32 chr2 103622127 103622370 + 1.5 NA Intergenic L1PA16|LINE|L1 -637819 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 306-11 chr3 25654192 25654519 + 1.5 NA intron (NM_001330700, intron 1 of 35) L1MB2|LINE|L1 10017 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 189.667-45 chr6 77559328 77559591 + 1.5 NA Intergenic Intergenic -90815 NM_001282136 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 422.666 chr1 8349143 8349564 + 1.5 NA Intergenic Intergenic 31268 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5|IDDNPF solute carrier family 45 member 1 protein-coding 290.334-8 chr18 9331298 9331523 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -3363 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 281.833-5 chr14 31926038 31926231 + 1.5 NA Intergenic Intergenic -18719 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 271.5-6 chr10 41747541 41747758 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 620396 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 731-2 chr14 64755449 64756402 + 1.5 NA intron (NM_001024858, intron 31 of 34) LTR60B|LTR|ERV1 29761 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 295.167-22 chr8 134525961 134526349 + 1.5 NA intron (NM_020863, intron 12 of 15) intron (NM_020863, intron 12 of 15) -71916 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 223.333-5 chr1 204258534 204258853 + 1.5 NA intron (NM_014935, intron 8 of 22) L3|LINE|CR1 -44705 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 392.667-3 chr13 32023573 32023966 + 1.5 NA TTS (NR_103839) TTS (NR_103839) 7870 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 362.167-2 chr1 202973357 202973820 + 1.5 NA Intergenic L1ME1|LINE|L1 -6331 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 173.5-21 chr14 51354357 51354488 + 1.5 NA intron (NR_038358, intron 4 of 4) intron (NR_038358, intron 4 of 4) 21029 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 314.667-14 chr9 90518668 90519064 + 1.5 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 63880 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 453.5-4 chr3 22118919 22119318 + 1.5 NA Intergenic Intergenic 161979 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 224.167-4 chr10 95179351 95179507 + 1.5 NA Intergenic MER65-int|LTR|ERV1 -14771 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 281.834-8 chr9 37584598 37584996 + 1.5 NA Intergenic Intergenic 7800 NM_001001790 401505 Hs.130774 NM_001001790 ENSG00000175768 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 protein-coding 309.167-16 chr9 130243136 130243618 + 1.5 NA Intergenic MIRc|SINE|MIR 1990 NR_162140 113219459 NR_162140 MIR12126 - microRNA 12126 ncRNA 282.667-15 chr2 62943810 62944216 + 1.5 NA intron (NM_001142615, intron 12 of 22) intron (NM_001142615, intron 12 of 22) 103698 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 206-34 chr6 153859998 153860411 + 1.5 NA Intergenic Intergenic -150292 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 285-9 chr18 56818311 56818508 + 1.5 NA intron (NM_015285, intron 20 of 27) intron (NM_015285, intron 20 of 27) 167024 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 251.333-11 chr13 42594935 42595333 + 1.5 NA intron (NM_003701, intron 2 of 4) intron (NM_003701, intron 2 of 4) 20982 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 219-22 chr3 51487222 51487503 + 1.5 NA intron (NR_146065, intron 1 of 25) L1MD3|LINE|L1 12640 NM_001171904 9730 Hs.716623 NM_014703 ENSG00000145041 DCAF1 RIP|VPRBP DDB1 and CUL4 associated factor 1 protein-coding 278.167-4 chr1 167113714 167114062 + 1.5 NA intron (NM_001080426, intron 3 of 5) intron (NM_001080426, intron 3 of 5) 19813 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27, atypical protein-coding 332.5-9 chr21 15773902 15774202 + 1.5 NA intron (NM_001352561, intron 3 of 23) Charlie1a|DNA|hAT-Charlie 44070 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 191.167-3 chr1 232815667 232815845 + 1.5 NA Intergenic Intergenic 10864 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 272-10 chr10 15950759 15951037 + 1.5 NA Intergenic MIRb|SINE|MIR -90365 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 299.833-6 chr11 85384128 85384363 + 1.5 NA intron (NM_001142699, intron 3 of 27) MIRb|SINE|MIR 243025 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 232.5-31 chr8 114218965 114219157 + 1.5 NA Intergenic Intergenic -782122 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 234.167-6 chr10 62231491 62231796 + 1.5 NA intron (NM_145307, intron 6 of 11) intron (NM_145307, intron 6 of 11) 37201 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 333.5-19 chr5 67900563 67900952 + 1.5 NA Intergenic Intergenic 107544 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 246 chr1 170615262 170615473 + 1.5 NA Intergenic Intergenic -48764 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 193.5-2 chr1 27523139 27523295 + 1.5 NA Intergenic Intergenic -33050 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 194.5-3 chr1 85499899 85500164 + 1.5 NA intron (NM_001134445, intron 1 of 6) (TTCC)n|Simple_repeat|Simple_repeat -34872 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 227.5-15 chr16 59055582 59055786 + 1.5 NA Intergenic Intergenic -321368 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 329.167-3 chr10 67326100 67326379 + 1.5 NA intron (NM_001127384, intron 5 of 17) L1PA13|LINE|L1 77171 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 191.5-34 chr3 34251812 34251991 + 1.5 NA Intergenic Intergenic 453271 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 290.833-3 chr11 30813104 30813505 + 1.5 NA Intergenic Intergenic 179382 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 418.834-2 chr3 22226824 22227140 + 1.5 NA Intergenic MER5A1|DNA|hAT-Charlie 269843 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 203.5-7 chr11 78300183 78300389 + 1.5 NA intron (NM_080491, intron 1 of 9) L1ME2|LINE|L1 41594 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 312.667 chr1 46338713 46339258 + 1.5 NA Intergenic L1M5|LINE|L1 -1192 NR_045789 387338 Hs.163424 NM_199044 ENSG00000117481 NSUN4 SHTAP NOP2/Sun RNA methyltransferase 4 protein-coding 382.501 chr11 62217002 62217758 + 1.5 NA Intergenic HERVIP10F-int|LTR|ERV1 8707 NM_002407 4246 Hs.97644 NM_002407 ENSG00000124939 SCGB2A1 LPHC|LPNC|MGB2|UGB3 secretoglobin family 2A member 1 protein-coding 219.5-35 chr8 5870946 5871183 + 1.5 NA Intergenic HAL1|LINE|L1 535484 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 326.5-10 chr2 53861056 53861395 + 1.5 NA Intergenic Intergenic -1192 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 254.667-10 chr15 92383514 92383838 + 1.5 NA Intergenic Intergenic -10205 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 179.333-11 chr14 39545257 39545423 + 1.5 NA Intergenic L1ME3A|LINE|L1 -112840 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 361.833-4 chr9 133133877 133134247 + 1.5 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) -2905 NM_001271774 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 218-18 chr18 61656884 61657091 + 1.5 NA Intergenic MIR|SINE|MIR -91189 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 481.167-3 chr2 84568623 84569082 + 1.5 NA intron (NM_001370, intron 11 of 76) L1MC5a|LINE|L1 52397 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 226.5-22 chr2 57172560 57172857 + 1.5 NA Intergenic L1MA4|LINE|L1 -734943 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 343.5-5 chr14 51156846 51157196 + 1.5 NA Intergenic MER65-int|LTR|ERV1 -61317 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 463.5-4 chr5 76641697 76642183 + 1.5 NA intron (NM_006633, intron 17 of 35) L2c|LINE|L2 -18537 NM_004101 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 211.5-28 chr2 159335107 159335380 + 1.5 NA intron (NM_001329858, intron 33 of 36) intron (NM_001329858, intron 33 of 36) -48540 NM_001128212 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 209.834-3 chr2 89841970 89842151 + 1.5 NA Intergenic Intergenic -204153 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 394.5-12 chrX 135596463 135596739 + 1.5 NA Intergenic LTR41|LTR|ERVL -75927 NR_046740 100874118 Hs.602150 NR_046740 ENSG00000225235 INTS6L-AS1 DDX26B-AS1 INTS6L antisense RNA 1 ncRNA 232.667-33 chr6 138428688 138429215 + 1.5 NA intron (NM_020464, intron 6 of 6) intron (NM_020464, intron 6 of 6) 6343 NR_036099 100423001 NR_036099 ENSG00000266555 MIR3145 mir-3145 microRNA 3145 ncRNA 241.5-27 chr9 36423008 36423271 + 1.5 NA Intergenic Intergenic -21941 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 405.168 chr6 62523079 62523411 + 1.5 NA Intergenic L1MC4a|LINE|L1 -237018 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 233.5-28 chr3 114987339 114987552 + 1.5 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 83969 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 255.667-18 chr8 99641495 99641742 + 1.5 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -104757 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 198.5-26 chr2 146048907 146049085 + 1.5 NA Intergenic L1MA2|LINE|L1 -538061 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 523.001 chr15 50138227 50138873 + 1.5 NA Intergenic Intergenic -19317 NR_073596 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 226.5-17 chr16 11875456 11875624 + 1.5 NA intron (NM_002094, intron 14 of 14) intron (NM_002094, intron 14 of 14) -23998 NM_015659 26156 Hs.401842 NM_015659 ENSG00000171490 RSL1D1 CSIG|L12|PBK1|UTP30 ribosomal L1 domain containing 1 protein-coding 225-3 chr1 198231036 198231309 + 1.5 NA intron (NM_133494, intron 1 of 9) L1M5|LINE|L1 74174 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 310-18 chr2 60902906 60903223 + 1.5 NA intron (NM_002908, intron 4 of 10) intron (NM_002908, intron 4 of 10) 21490 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 169-8 chr11 76054488 76054673 + 1.5 NA intron (NM_003369, intron 12 of 14) L2a|LINE|L2 151922 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 222.667-20 chr17 75431880 75432167 + 1.5 NA Intergenic HY3|scRNA|scRNA -24612 NM_001351202 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 IDDCDF|KIAA0195 transmembrane protein 94 protein-coding 248.833-9 chr13 64582662 64582911 + 1.5 NA Intergenic Intergenic -506775 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 386.001 chr10 61612651 61613106 + 1.5 NA Intergenic Intergenic -50051 NM_001366909 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 249.667-26 chr7 14768087 14768520 + 1.5 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 73147 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 304-4 chr10 78974030 78974264 + 1.5 NA intron (NR_015429, intron 3 of 7) CpG 93301 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 235.166 chr1 39182871 39183167 + 1.5 NA intron (NM_012090, intron 1 of 92) L1MB7|LINE|L1 98852 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 360.167-10 chr6 102454519 102454873 + 1.5 NA Intergenic Intergenic 1055711 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 196.333-22 chr2 58393813 58394023 + 1.5 NA Intergenic L1MEd|LINE|L1 118041 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 687.999 chr14 54488439 54489090 + 1.5 NA intron (NM_004124, intron 1 of 6) CpG 216 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 171.167-38 chr8 136431203 136431418 + 1.5 NA Intergenic L1M1|LINE|L1 -99488 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 349.334-4 chr14 67702833 67703169 + 1.5 NA intron (NM_152443, intron 1 of 8) AluJb|SINE|Alu 1115 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 282-15 chr16 87636309 87636807 + 1.5 NA intron (NM_020655, intron 1 of 4) intron (NM_020655, intron 1 of 4) 34050 NM_001271605 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 361.5-4 chr12 6904684 6905240 + 1.5 NA 5' UTR (NM_001135217, exon 1 of 8) 5' UTR (NM_001135217, exon 1 of 8) 140 NM_201650 10233 Hs.155586 NM_006992 ENSG00000010626 LRRC23 LRPB7 leucine rich repeat containing 23 protein-coding 336.833-4 chr17 18938670 18939053 + 1.5 NA Intergenic L1MC1|LINE|L1 -11815 NM_001282417 125206 Hs.462418 NM_152351 ENSG00000154025 SLC5A10 SGLT-5|SGLT5 solute carrier family 5 member 10 protein-coding 330.5-5 chr3 7174112 7174516 + 1.5 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) -280297 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 197.167-16 chr18 3321450 3321787 + 1.5 NA Intergenic MIRc|SINE|MIR 28941 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 297-17 chr3 26030502 26030785 + 1.5 NA Intergenic L1MEd|LINE|L1 -156948 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 238.167-9 chr14 68141096 68141316 + 1.5 NA intron (NM_133509, intron 7 of 10) Charlie1a|DNA|hAT-Charlie 317614 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 276-2 chr1 171718825 171719171 + 1.5 NA intron (NM_001185127, intron 4 of 7) MER58A|DNA|hAT-Charlie 23067 NR_033704 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 326.833-3 chr1 107116143 107116706 + 1.5 NA Intergenic LTR16A|LTR|ERVL -23664 NM_001312688 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 288.5-27 chr6 56457994 56458312 + 1.5 NA 3' UTR (NM_015548, exon 84 of 84) 3' UTR (NM_015548, exon 84 of 84) -64025 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 296.166-5 chr3 84673755 84673970 + 1.5 NA intron (NR_033860, intron 16 of 20) intron (NR_033860, intron 16 of 20) 195713 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 360.834 chr1 184573518 184573911 + 1.5 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 181144 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 457-4 chr7 35630713 35631580 + 1.5 NA Intergenic Intergenic 63989 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 413.333-4 chr15 74323187 74323564 + 1.5 NA intron (NM_182791, intron 1 of 8) L1ME3B|LINE|L1 4816 NM_182791 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 368.833-6 chr5 147823480 147823836 + 1.5 NA TTS (NM_003122) TTS (NM_003122) 15573 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 275.167-26 chr8 117623955 117624229 + 1.5 NA Intergenic Intergenic 103379 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 229.667-7 chr12 2527787 2528149 + 1.5 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 144252 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 372.5-5 chr16 67806772 67807036 + 1.5 NA promoter-TSS (NM_001320239) promoter-TSS (NM_001320239) 15 NM_001288993 55815 Hs.632212 NM_018430 ENSG00000102904 TSNAXIP1 TXI1 translin associated factor X interacting protein 1 protein-coding 246.167-22 chr21 23129460 23129737 + 1.5 NA Intergenic Intergenic 50314 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 280.667-3 chr10 103097240 103097574 + 1.5 NA intron (NM_001351187, intron 13 of 21) intron (NM_001351187, intron 13 of 21) 56414 NM_001351193 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 201.167-33 chrX 34536770 34536964 + 1.5 NA Intergenic L1ME3B|LINE|L1 120418 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 171-8 chr1 221119164 221119377 + 1.5 NA Intergenic Intergenic 217026 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 332.333-5 chr11 38245583 38245828 + 1.5 NA Intergenic MIR1_Amn|SINE|MIR 307104 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 182.5-8 chr11 83578187 83578313 + 1.5 NA intron (NM_001142699, intron 19 of 27) L1MEc|LINE|L1 104175 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 287.667-11 chr17 10613773 10614205 + 1.5 NA intron (NR_125367, intron 10 of 10) intron (NR_125367, intron 10 of 10) 43320 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 311.5-12 chr3 67652239 67652581 + 1.5 NA intron (NM_001177599, intron 1 of 10) intron (NM_001177599, intron 1 of 10) 2204 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 202.833-7 chr12 17915936 17916129 + 1.5 NA Intergenic L1ME1|LINE|L1 174161 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 247.5-19 chr2 13094441 13094626 + 1.5 NA Intergenic Intergenic -87520 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 335.001-7 chr7 20353097 20353360 + 1.5 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -21466 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 364.5-8 chr20 22537675 22537923 + 1.5 NA Intergenic Intergenic 40843 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 305.5-20 chr9 32000994 32001258 + 1.5 NA Intergenic L2|LINE|L2 -383477 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 390.333-8 chr5 131012637 131013003 + 1.5 NA Intergenic L1MA3|LINE|L1 152436 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 731.333-5 chr8 41701437 41702321 + 1.5 NA intron (NM_020475, intron 21 of 41) CpG -36605 NM_001142445 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 186.833-13 chr20 1527338 1527462 + 1.5 NA Intergenic AluJb|SINE|Alu 30305 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 363.166 chr10 103039646 103039999 + 1.5 NA intron (NM_199076, intron 1 of 6) intron (NM_199076, intron 1 of 6) 113999 NM_001351193 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 355.833-6 chr2 161399768 161400223 + 1.5 NA intron (NM_005805, intron 10 of 11) intron (NM_005805, intron 10 of 11) -16302 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 472.333-3 chr3 24893580 24894200 + 1.5 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 64567 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 383 chr10 68699692 68700049 + 1.5 NA Intergenic Intergenic -21369 NR_104262 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 177.667-18 chr16 10573413 10573910 + 1.5 NA intron (NM_001424, intron 1 of 4) L1ME3G|LINE|L1 6937 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 353.5-7 chr12 28262074 28262585 + 1.5 NA intron (NM_001352082, intron 4 of 13) intron (NM_001352082, intron 4 of 13) -71591 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 268-27 chr3 142280211 142280424 + 1.5 NA Intergenic HUERS-P3b-int|LTR|ERV1 -54732 NM_001039547 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 303.833-3 chr15 101165256 101165554 + 1.5 NA Intergenic L1ME4a|LINE|L1 86643 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 273-26 chr7 36130428 36130623 + 1.5 NA Intergenic L2c|LINE|L2 -22729 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 215-22 chr2 229660869 229661102 + 1.5 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 53570 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 246.5-3 chr10 64267946 64268236 + 1.5 NA Intergenic Intergenic -557437 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 248-2 chr1 162056088 162056442 + 1.5 NA Intergenic Intergenic -13426 NM_014697 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 282.833-6 chr14 70489660 70489912 + 1.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -6030 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 208.333-37 chr6 159942242 159942380 + 1.5 NA Intergenic Intergenic -26788 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 203.667-51 chr7 151315195 151315484 + 1.5 NA Intergenic Charlie2b|DNA|hAT-Charlie -26422 NM_001243351 51667 Hs.647082 NM_016118 ENSG00000013374 NUB1 BS4|NUB1L|NYREN18 negative regulator of ubiquitin like proteins 1 protein-coding 325.5-7 chr14 65960226 65960624 + 1.5 NA Intergenic Intergenic 489323 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 340.5-7 chr4 82660281 82660626 + 1.5 NA 3' UTR (NM_024906, exon 4 of 4) 3' UTR (NM_024906, exon 4 of 4) -39016 NR_024088 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 247.667-6 chr12 51823938 51824205 + 1.5 NA intron (NM_001013690, intron 1 of 1) intron (NM_001013690, intron 1 of 1) 7846 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 207.833-18 chr3 107270687 107270904 + 1.5 NA intron (NR_028302, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR 30103 NR_028302 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 335.167-10 chr4 70232537 70232991 + 1.5 NA intron (NM_152997, intron 2 of 4) intron (NM_152997, intron 2 of 4) 6640 NM_152997 260436 Hs.733448 NM_152997 ENSG00000181617 FDCSP C4orf7|FDC-SP follicular dendritic cell secreted protein protein-coding 327-15 chr3 188272670 188272975 + 1.5 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 47417 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 409.333-3 chr19 33454301 33454886 + 1.5 NA intron (NM_001166056, intron 7 of 12) AluSz6|SINE|Alu 67198 NM_000285 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 433-12 chr6 157873666 157874306 + 1.5 NA intron (NM_016224, intron 3 of 17) intron (NM_016224, intron 3 of 17) 50740 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 274.667-26 chr8 63261706 63262067 + 1.5 NA Intergenic Intergenic 92883 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 338.5-6 chr2 88305564 88305961 + 1.5 NA Intergenic Intergenic 132623 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 282.667-22 chr4 40676413 40676732 + 1.5 NA Intergenic L1M4a1|LINE|L1 -45978 NM_001371114 184.833 chr1 68010267 68010497 + 1.5 NA intron (NR_040077, intron 1 of 9) L2|LINE|L2 41249 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 336.5-5 chr12 26628207 26628597 + 1.5 NA intron (NM_002223, intron 22 of 56) intron (NM_002223, intron 22 of 56) 204792 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 242.833-24 chr8 137267695 137268083 + 1.5 NA Intergenic L1MC4a|LINE|L1 145699 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 376.667 chr12 38865382 38865958 + 1.5 NA intron (NM_153634, intron 3 of 19) L1ME3A|LINE|L1 39921 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 253.333-39 chr8 120683613 120683892 + 1.5 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -77501 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 340.833-11 chr6 137040582 137040925 + 1.5 NA intron (NM_001278724, intron 1 of 5) L1MC4a|LINE|L1 3559 NM_001278722 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 206.333-34 chr8 113517463 113517814 + 1.5 NA Intergenic MER50|LTR|ERV1 -80699 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 486.833-3 chr14 70045774 70046182 + 1.5 NA non-coding (NR_104122, exon 6 of 6) non-coding (NR_104122, exon 6 of 6) 34239 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 300-21 chr6 142473317 142473723 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 164316 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 171.5-26 chr2 118165786 118165993 + 1.5 NA Intergenic L1MB1|LINE|L1 20497 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 455.333-3 chr17 43024365 43024833 + 1.5 NA promoter-TSS (NM_005440) promoter-TSS (NM_005440) -632 NM_005440 8153 Hs.603111 NM_005440 ENSG00000108830 RND2 ARHN|RHO7|RhoN Rho family GTPase 2 protein-coding 273.833-5 chr19 30550715 30551024 + 1.5 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 178485 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 315.833-6 chr17 60307281 60307518 + 1.5 NA intron (NM_032582, intron 2 of 33) AluSz|SINE|Alu -75754 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 308-2 chr1 204206272 204206491 + 1.5 NA intron (NM_198447, intron 1 of 4) intron (NM_198447, intron 1 of 4) 7607 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 191.333-44 chr8 120641352 120641636 + 1.5 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -119759 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 188-7 chr10 102641963 102642275 + 1.5 NA Intergenic CpG -2376 NR_144321 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 686 chr14 49622202 49623284 + 1.5 NA 3' UTR (NM_002408, exon 1 of 1) 3' UTR (NM_002408, exon 1 of 1) 1944 NM_002408 4247 Hs.93338 NM_002408 ENSG00000168282 MGAT2 CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 326-18 chr8 83817049 83817396 + 1.5 NA Intergenic Intergenic -365565 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 394-5 chr16 51547075 51547599 + 1.5 NA Intergenic L1ME3B|LINE|L1 -215182 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 366.167-7 chr6 8011388 8011819 + 1.5 NA intron (NR_037616, intron 4 of 12) L1MEd|LINE|L1 25501 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 171.5-37 chr5 114194385 114194570 + 1.5 NA Intergenic L1MB8|LINE|L1 -167593 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 167.333-53 chr7 45083046 45083306 + 1.5 NA exon (NM_001146334, exon 2 of 8) exon (NM_001146334, exon 2 of 8) 5793 NM_001146334 23148 Hs.96633 NM_001146334 ENSG00000136274 NACAD - NAC alpha domain containing protein-coding 323.167-4 chr3 89060142 89060524 + 1.5 NA Intergenic Intergenic -47288 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 312.667-19 chr5 106561764 106562180 + 1.5 NA Intergenic HERVL-int|LTR|ERVL 449042 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 289.167-4 chr10 99779738 99780007 + 1.5 NA Intergenic L1MCa|LINE|L1 -2768 NM_000392 1244 Hs.368243 NM_000392 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP binding cassette subfamily C member 2 protein-coding 308.167-13 chr6 50411414 50411772 + 1.5 NA Intergenic MIR|SINE|MIR -301951 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 186.5-32 chr8 87233113 87233275 + 1.5 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 366779 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 260.667-20 chr17 57010239 57010539 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 32282 NM_021626 59342 Hs.514950 NM_021626 ENSG00000121064 SCPEP1 HSCP1|RISC serine carboxypeptidase 1 protein-coding 277.167-8 chr2 194248303 194248624 + 1.5 NA Intergenic Intergenic -95806 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 273-25 chr7 27306998 27307326 + 1.5 NA Intergenic Intergenic -59933 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 170.333-57 chrX 121615908 121616079 + 1.5 NA Intergenic L1MA8|LINE|L1 245021 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 186.833-18 chr5 156838151 156838275 + 1.5 NA Intergenic AluJb|SINE|Alu -12082 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 285-16 chr4 118692761 118693089 + 1.5 NA intron (NM_020961, intron 5 of 10) L1MB8|LINE|L1 7533 NM_020961 57721 Hs.596872 NM_020961 ENSG00000145388 METTL14 hMETTL14 methyltransferase like 14 protein-coding 208.333-30 chr4 149264101 149264590 + 1.5 NA intron (NR_125887, intron 12 of 12) intron (NR_125887, intron 12 of 12) 110050 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 237-38 chr8 90974131 90974470 + 1.5 NA intron (NM_001363275, intron 3 of 5) MLT1G3|LTR|ERVL-MaLR 10777 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 297.333-11 chr2 112739155 112739493 + 1.5 NA intron (NR_130712, intron 9 of 9) AluJr|SINE|Alu 17838 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 384.167-9 chr6 41427708 41428075 + 1.5 NA Intergenic CpG -74553 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 240.5-19 chr3 134577264 134577505 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 73634 NM_001366276 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 266.5-31 chrX 138127804 138128152 + 1.5 NA Intergenic L1P4a|LINE|L1 539815 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 247.5-25 chr2 159612426 159612647 + 1.5 NA intron (NM_001329857, intron 1 of 36) intron (NM_001329857, intron 1 of 36) -2758 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 253.333-24 chr3 196529876 196530083 + 1.5 NA Intergenic L1PB1|LINE|L1 -14633 NM_001077657 255798 Hs.631933 NM_001077657 ENSG00000214097 SMCO1 C3orf43 single-pass membrane protein with coiled-coil domains 1 protein-coding 387.167-8 chr5 138363935 138364197 + 1.5 NA intron (NM_016604, intron 1 of 23) AluSz|SINE|Alu 11381 NM_016604 51780 Hs.483486 NM_016604 ENSG00000120733 KDM3B 5qNCA|C5orf7|JMJD1B|NET22 lysine demethylase 3B protein-coding 387.834-2 chr14 57202286 57202871 + 1.5 NA 3' UTR (NM_006544, exon 18 of 18) 3' UTR (NM_006544, exon 18 of 18) 66327 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 291.5-5 chr10 101608276 101608666 + 1.5 NA intron (NM_001329744, intron 5 of 6) intron (NM_001329744, intron 5 of 6) -6974 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 342-5 chr2 99456679 99457011 + 1.5 NA intron (NM_001321455, intron 3 of 23) intron (NM_001321455, intron 3 of 23) 33172 NM_001037872 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 446.167-3 chr1 236109135 236109728 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie -33108 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 353-17 chr9 116152370 116152642 + 1.5 NA Intergenic Intergenic -1285 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 171.833-31 chr9 33076771 33077013 + 1.5 NA promoter-TSS (NM_018225) promoter-TSS (NM_018225) -218 NM_018225 55234 Hs.655351 NM_018225 ENSG00000122692 SMU1 BWD|SMU-1|fSAP57 SMU1 DNA replication regulator and spliceosomal factor protein-coding 201.667-3 chr1 147578561 147578866 + 1.5 NA intron (NM_004326, intron 1 of 9) intron (NM_004326, intron 1 of 9) 37212 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS BCL9 transcription coactivator protein-coding 257.5-3 chr1 90672873 90673211 + 1.5 NA Intergenic Intergenic 15292 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 248.5-29 chr5 10085908 10086348 + 1.5 NA Intergenic Intergenic 163760 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 334.5-12 chr19 42386719 42387460 + 1.5 NA TTS (NM_032488) TTS (NM_032488) 3208 NM_032488 84518 Hs.148590 NM_032488 ENSG00000105427 CNFN PLAC8L2 cornifelin protein-coding 285.667-11 chr18 70632830 70633095 + 1.5 NA intron (NR_160904, intron 2 of 2) intron (NR_160904, intron 2 of 2) 17992 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 274.5-17 chr3 106802294 106802617 + 1.5 NA Intergenic L1ME2|LINE|L1 438183 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 201.167-23 chr4 71209980 71210346 + 1.5 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 22877 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 238-20 chr2 188556252 188556511 + 1.5 NA intron (NM_016315, intron 7 of 11) L1MA4A|LINE|L1 233742 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 336.334-9 chr8 73672115 73672588 + 1.5 NA intron (NM_001164383, intron 1 of 9) L1ME3|LINE|L1 74489 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 216.834-9 chr4 37248990 37249150 + 1.5 NA intron (NM_001144990, intron 1 of 6) MER3|DNA|hAT-Charlie 4327 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 234.5-32 chr4 63719575 63719955 + 1.5 NA Intergenic Intergenic 689685 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 267.5-21 chr2 19159684 19160056 + 1.5 NA Intergenic Intergenic -132899 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 314.833-2 chr10 33358894 33359179 + 1.5 NA Intergenic Charlie21a|DNA|hAT-Charlie -24131 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 251.333-7 chr11 8847256 8847433 + 1.5 NA intron (NM_005418, intron 2 of 22) intron (NM_005418, intron 2 of 22) -36009 NM_139157 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 200.5-39 chr6 5325506 5325836 + 1.5 NA intron (NM_006567, intron 1 of 6) intron (NM_006567, intron 1 of 6) 64158 NM_006567 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 339.833-2 chr10 51864867 51865255 + 1.5 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -165466 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 348-11 chr5 181222353 181223084 + 1.5 NA promoter-TSS (NR_045218) promoter-TSS (NR_045218) -85 NR_039781 100616342 NR_039781 ENSG00000264732 MIR4638 mir-4638 microRNA 4638 ncRNA 316-10 chr3 44393859 44394148 + 1.5 NA intron (NM_001282915, intron 6 of 10) intron (NM_001282915, intron 6 of 10) 28934 NM_001351479 102724231 Hs.131918 NM_001351479 C3orf86 LINC00694 chromosome 3 open reading frame 86 protein-coding 205.5-22 chr3 77313338 77313514 + 1.5 NA intron (NM_001290039, intron 2 of 26) L1MA5A|LINE|L1 215414 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 163.833-2 chr1 78733773 78733886 + 1.5 NA Intergenic Intergenic 83998 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 411.5-2 chr6 51683430 51683999 + 1.5 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 61844 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 316.5-16 chr2 177563050 177563456 + 1.5 NA Intergenic MER20B|DNA|hAT-Charlie -10457 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 179.833-11 chr14 71697472 71697878 + 1.5 NA intron (NM_001354286, intron 14 of 24) intron (NM_001354286, intron 14 of 24) 111377 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 224.167-20 chr2 62508257 62508555 + 1.5 NA Intergenic L2c|LINE|L2 -2211 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 229.834-3 chr4 125367914 125368095 + 1.5 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 51592 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 251.167-10 chr18 3313347 3313596 + 1.5 NA Intergenic Intergenic 37088 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 650.833-2 chr2 57518264 57518931 + 1.5 NA Intergenic MIRc|SINE|MIR -389054 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 448.834-5 chr9 114907158 114907739 + 1.5 NA intron (NM_001252290, intron 2 of 4) intron (NM_001252290, intron 2 of 4) 23147 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 236-4 chr12 26144682 26144879 + 1.5 NA Intergenic Intergenic -19743 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 261.5-24 chr20 59735059 59735425 + 1.5 NA intron (NM_183246, intron 1 of 11) L2a|LINE|L2 14032 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 310.5-22 chr9 116647231 116647595 + 1.5 NA intron (NM_014010, intron 16 of 21) intron (NM_014010, intron 16 of 21) 39802 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 216-28 chr2 231632067 231632274 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 39306 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 308.667 chr1 7818592 7818887 + 1.5 NA intron (NM_001289861, intron 13 of 22) MER3|DNA|hAT-Charlie 34310 NM_001289862 8863 Hs.162200 NM_016831 ENSG00000049246 PER3 FASPS3|GIG13 period circadian regulator 3 protein-coding 271.167-4 chr12 126175475 126175713 + 1.5 NA Intergenic L1MC3|LINE|L1 79602 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 316-9 chr21_GL383578v2_alt 22966 23332 + 1.5 NA NA Intergenic NA NA 204.667-18 chr2 9071126 9071390 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -67574 NR_135604 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 259-37 chr7 13264132 13264493 + 1.5 NA Intergenic L2c|LINE|L2 576679 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 210-6 chr11 65552917 65553151 + 1.5 NA intron (NM_001130144, intron 5 of 27) intron (NM_001130144, intron 5 of 27) 5194 NM_021070 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|GPHYSD3|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 181.834-6 chr18 33761426 33761564 + 1.5 NA Intergenic Intergenic 183276 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 184.5-16 chr14 50413319 50413506 + 1.5 NA Intergenic Intergenic -16114 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 205-13 chr2 84316438 84316656 + 1.5 NA Intergenic Intergenic 25865 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 517.333-3 chr20 57335545 57336031 + 1.5 NA intron (NM_198265, intron 6 of 11) intron (NM_198265, intron 6 of 11) 5985 NM_012444 23626 Hs.159737 NM_012444 ENSG00000054796 SPO11 CT35|SPATA43|TOPVIA SPO11 initiator of meiotic double stranded breaks protein-coding 311.334-7 chr2 218466194 218466629 + 1.5 NA intron (NM_020935, intron 20 of 25) MER20|DNA|hAT-Charlie 47288 NM_007127 7429 Hs.654595 NM_007127 ENSG00000127831 VIL1 D2S1471|VIL villin 1 protein-coding 198-8 chr12 27926527 27926895 + 1.5 NA Intergenic Intergenic 43265 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 366 chr10 102176801 102177244 + 1.5 NA Intergenic AluY|SINE|Alu 24633 NM_004741 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 203-30 chr5 163424608 163424808 + 1.5 NA Intergenic MLT2B1|LTR|ERVL -12863 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 288.833-7 chr18 6315029 6315393 + 1.5 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 43819 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 272.5 chr1 162854184 162854376 + 1.5 NA TTS (NM_178550) TTS (NM_178550) 14535 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 269.5-23 chr7 54965103 54965395 + 1.5 NA Intergenic L1M5|LINE|L1 -53768 NM_005228 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 190-24 chr16 79658287 79658520 + 1.5 NA Intergenic Intergenic -57666 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 249.5-6 chr17 28424698 28425029 + 1.5 NA Intergenic Intergenic -18651 NM_001242366 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 297-19 chr3 86008853 86009110 + 1.5 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -180931 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 292.667-6 chr17 72718439 72718677 + 1.5 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -78086 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 257.5-22 chr3 111898672 111898916 + 1.5 NA intron (NM_001134437, intron 3 of 17) Tigger1|DNA|TcMar-Tigger 38967 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 281.167-14 chr2 98244092 98244437 + 1.5 NA intron (NM_001345864, intron 13 of 21) intron (NM_001345864, intron 13 of 21) 94731 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 197.667-43 chr6 113082806 113083083 + 1.5 NA Intergenic MER63A|DNA|hAT-Blackjack 350503 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 302-16 chr3 150297969 150298301 + 1.5 NA intron (NR_110186, intron 1 of 3) intron (NR_110186, intron 1 of 3) 25612 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 272.5-6 chr14 70036668 70036998 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 43384 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 226-43 chr9 72681706 72681944 + 1.5 NA intron (NM_138691, intron 5 of 23) intron (NM_138691, intron 5 of 23) 160024 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 407.5-8 chr14 70811407 70811886 + 1.5 NA Intergenic AluJb|SINE|Alu -2133 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 215.833-16 chr20 41454821 41455177 + 1.5 NA intron (NM_032221, intron 19 of 36) intron (NM_032221, intron 19 of 36) -88181 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 272.833-16 chr5 156462092 156462572 + 1.5 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 135168 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 257-21 chr3 96842138 96842491 + 1.5 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 27720 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 249-24 chr3 70825834 70826038 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 238988 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 409.5-5 chr2 149218408 149218790 + 1.5 NA Intergenic Intergenic 100425 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 288.167-23 chr9 20897409 20897728 + 1.5 NA intron (NM_017794, intron 23 of 45) L1MC1|LINE|L1 110641 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 382-10 chr4 65531804 65532098 + 1.5 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 137537 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 272 chr1 113828321 113828684 + 1.5 NA intron (NM_012411, intron 16 of 18) L1MC5a|LINE|L1 15890 NR_125965 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 440.5-7 chr8 90985353 90985817 + 1.5 NA promoter-TSS (NM_001190972) promoter-TSS (NM_001190972) -347 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 323.333-15 chr20 57505625 57505967 + 1.5 NA TTS (NM_001269050) TTS (NM_001269050) 19071 NM_001269044 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 164.333-19 chr14 95054201 95054340 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 79233 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 321-22 chr5 151694007 151694376 + 1.5 NA Intergenic Intergenic -7276 NM_003118 6678 Hs.111779 NM_003118 ENSG00000113140 SPARC BM-40|OI17|ON secreted protein acidic and cysteine rich protein-coding 284.833-6 chr12 57061053 57061436 + 1.5 NA intron (NM_001130963, intron 7 of 8) intron (NM_001130963, intron 7 of 8) -10046 NM_001256041 4640 Hs.5394 NM_005379 ENSG00000166866 MYO1A BBMI|DFNA48|MIHC|MYHL myosin IA protein-coding 464.833-2 chr9 76987559 76988184 + 1.5 NA Intergenic Intergenic -31784 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 222.333-34 chr8 122448657 122448938 + 1.5 NA intron (NR_131202, intron 2 of 3) MIRb|SINE|MIR 119847 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 532.5 chr17 66493674 66494148 + 1.5 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -77057 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 183.667-16 chr15 56635590 56635812 + 1.5 NA intron (NM_001002843, intron 19 of 20) intron (NM_001002843, intron 19 of 20) 98385 NM_001002843 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 381.166-3 chr3 181241754 181242021 + 1.5 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 10150 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 343.833-11 chr7 25447714 25448052 + 1.5 NA Intergenic Intergenic 215257 NR_157825 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 316.167-9 chr2 71276778 71277050 + 1.5 NA Intergenic CpG -49811 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 170-52 chr7 46145559 46145698 + 1.5 NA Intergenic Intergenic -224356 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 245.667-23 chr5 74840199 74840450 + 1.5 NA intron (NM_015566, intron 2 of 12) intron (NM_015566, intron 2 of 12) -25569 NR_134288 441086 Hs.653007 NR_134288 LOC441086 - uncharacterized LOC441086 ncRNA 382.833-5 chr3 187743630 187744284 + 1.5 NA intron (NM_001706, intron 1 of 9) CpG 1511 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 238.333-4 chr1 192477493 192477822 + 1.5 NA Intergenic MamRTE1|LINE|RTE-BovB -98116 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 292.334-8 chr4 112853830 112854152 + 1.5 NA intron (NM_001354275, intron 1 of 43) L2c|LINE|L2 -6996 NM_001354271 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 317.667-11 chr5 96344890 96345275 + 1.5 NA intron (NR_130776, intron 3 of 4) intron (NR_130776, intron 3 of 4) 87077 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 446.5-6 chr4 12541001 12541515 + 1.5 NA Intergenic Intergenic 317807 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 408-6 chr3 57651953 57652390 + 1.5 NA intron (NM_152678, intron 9 of 19) MLT1F1|LTR|ERVL-MaLR 40906 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 448.167-3 chr17 9704885 9705205 + 1.5 NA intron (NM_153210, intron 12 of 14) L1ME4b|LINE|L1 59508 NM_001267576 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 256.5-14 chr18 21409904 21410103 + 1.5 NA intron (NM_001142966, intron 7 of 32) L2a|LINE|L2 167761 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 189.167-14 chr13 23928460 23928680 + 1.5 NA intron (NR_073430, intron 3 of 4) intron (NR_073430, intron 3 of 4) 20745 NR_073430 400110 Hs.744780 NM_207439 ANKRD20A19P - ankyrin repeat domain 20 family member A19, pseudogene pseudo 214.5-30 chr6 123169810 123170016 + 1.5 NA Intergenic Intergenic 173678 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 301.5 chr1 6161785 6162033 + 1.5 NA intron (NM_015557, intron 2 of 41) intron (NM_015557, intron 2 of 41) 18412 NM_015557 26038 Hs.522898 NM_015557 ENSG00000116254 CHD5 CHD-5 chromodomain helicase DNA binding protein 5 protein-coding 552.833 chr12 49867035 49867719 + 1.5 NA 3' UTR (NM_012306, exon 12 of 12) 3' UTR (NM_012306, exon 12 of 12) -24271 NM_181708 144233 Hs.142736 NM_181708 ENSG00000186666 BCDIN3D - BCDIN3 domain containing RNA methyltransferase protein-coding 425-10 chr8 68258348 68258797 + 1.5 NA Intergenic Intergenic -71801 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 294.167-3 chr11 5383421 5383658 + 1.5 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) -5838 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 259.5-31 chr9 73767962 73768148 + 1.5 NA Intergenic Intergenic -603476 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 290.5-17 chr22 29626713 29626929 + 1.5 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 23188 NM_181825 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 374.667 chr1 86383620 86384019 + 1.5 NA intron (NM_001007022, intron 4 of 17) intron (NM_001007022, intron 4 of 17) 12242 NM_001366784 57489 Hs.149360 NM_020729 ENSG00000122417 ODF2L - outer dense fiber of sperm tails 2 like protein-coding 183.167-30 chr5 127320294 127320464 + 1.5 NA intron (NM_001308119, intron 2 of 14) intron (NM_001308119, intron 2 of 14) 29583 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 181.5-25 chr2 170835714 170835890 + 1.5 NA intron (NM_013445, intron 5 of 6) intron (NM_013445, intron 5 of 6) 18915 NM_000817 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 379-7 chr3 172749967 172750315 + 1.5 NA promoter-TSS (NM_001349104) promoter-TSS (NM_001349104) -544 NM_001258316 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 172.5-43 chr5 123340012 123340183 + 1.5 NA Intergenic Intergenic 83495 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 252.5-28 chr9 70579038 70579338 + 1.5 NA intron (NM_001366143, intron 21 of 25) 7SLRNA|srpRNA|srpRNA -164531 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 176-23 chr2 189037832 189038014 + 1.5 NA intron (NM_000393, intron 51 of 53) intron (NM_000393, intron 51 of 53) 42293 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 238.833-2 chr1 171982531 171982721 + 1.5 NA intron (NM_001278252, intron 2 of 14) intron (NM_001278252, intron 2 of 14) 118434 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 479.834 chr1 44790003 44790621 + 1.5 NA Intergenic Intergenic -2142 NM_153274 266675 Hs.302513 NM_153274 ENSG00000142959 BEST4 VMD2L2 bestrophin 4 protein-coding 280.333-3 chr10 22246016 22246433 + 1.5 NA Intergenic AluJo|SINE|Alu -5848 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 282.833 chr1 117618395 117618707 + 1.5 NA intron (NM_017709, intron 1 of 1) intron (NM_017709, intron 1 of 1) 12503 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 524.833-3 chr11 18321781 18322603 + 1.5 NA promoter-TSS (NM_005316) promoter-TSS (NM_005316) -18 NM_181507 11234 Hs.437599 NM_007216 ENSG00000110756 HPS5 AIBP63|BLOC2S2 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 protein-coding 753.833 chr22 28013057 28013807 + 1.5 NA intron (NM_001145418, intron 14 of 22) intron (NM_001145418, intron 14 of 22) -92820 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 342.334 chr1 189531163 189531618 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie 944620 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 770.5-3 chr8 23246106 23247166 + 1.5 NA promoter-TSS (NM_001317899) promoter-TSS (NM_001317899) -5 NM_001363183 91782 Hs.5019 NM_152272 ENSG00000147457 CHMP7 - charged multivesicular body protein 7 protein-coding 391.167-9 chr6 75431037 75431568 + 1.5 NA intron (NR_125859, intron 4 of 8) intron (NR_125859, intron 4 of 8) 2895 NR_039670 100616389 NR_039670 ENSG00000263533 MIR4463 - microRNA 4463 ncRNA 281.167-2 chr1 215523758 215524103 + 1.5 NA Intergenic MIRc|SINE|MIR -43374 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 633.667 chr1 231357377 231358434 + 1.5 NA Intergenic Intergenic 19612 NM_001010984 83932 Hs.554892 NM_032018 ENSG00000010072 SPRTN C1orf124|DVC1|PRO4323|spartan SprT-like N-terminal domain protein-coding 291.5-29 chr5 166640965 166641167 + 1.5 NA Intergenic Intergenic 285304 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 238.833-13 chr22 34043300 34043590 + 1.5 NA Intergenic Intergenic -120557 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 278.167-3 chr1 28780995 28781433 + 1.5 NA Intergenic LTR2|LTR|ERV1 -30956 NM_000911 4985 Hs.372 NM_000911 ENSG00000116329 OPRD1 DOP|DOR|DOR1|OPRD opioid receptor delta 1 protein-coding 388-15 chr8 130527932 130528364 + 1.5 NA Intergenic Intergenic -84474 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 208.667-15 chr13 98673000 98673258 + 1.5 NA Intergenic Intergenic 79543 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 299-17 chr5 172792176 172792553 + 1.5 NA Intergenic Intergenic -21169 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 225-24 chr3 49358262 49358504 + 1.5 NA promoter-TSS (NM_201397) promoter-TSS (NM_201397) -30 NM_000581 2876 Hs.76686 NM_000581 ENSG00000233276 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 243.167-17 chr7 5989852 5990100 + 1.5 NA intron (NM_001322007, intron 8 of 13) intron (NM_001322007, intron 8 of 13) 19073 NM_001322014 5395 Hs.632637 NM_000535 ENSG00000122512 PMS2 HNPCC4|MLH4|PMS2CL|PMSL2 PMS1 homolog 2, mismatch repair system component protein-coding 348-3 chr11 72416766 72417300 + 1.5 NA intron (NM_001258394, intron 2 of 17) L1MB7|LINE|L1 17498 NM_001258393 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 322.167-7 chr4 67332308 67333031 + 1.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR 89331 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 459.833-3 chr14 82710371 82710761 + 1.5 NA Intergenic Intergenic 67934 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 244.167-27 chr8 65634214 65634633 + 1.5 NA promoter-TSS (NM_018120) promoter-TSS (NM_018120) -206 NM_001286702 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 167-33 chr5 23622205 23622434 + 1.5 NA Intergenic Intergenic 114664 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 240-6 chr10 133565538 133565871 + 1.5 NA promoter-TSS (NM_001143763) promoter-TSS (NM_001143763) -70 NM_001143763 93426 Hs.553795 NM_130784 ENSG00000171772 SYCE1 C10orf94|CT76|POF12|SPGF15 synaptonemal complex central element protein 1 protein-coding 381.001-3 chr6 47134854 47135313 + 1.5 NA Intergenic L2a|LINE|L2 -92751 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 275.501-2 chr4 30820541 30820764 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 100283 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 285-20 chr7 79175443 79175668 + 1.5 NA intron (NM_001301128, intron 1 of 20) Tigger3a|DNA|TcMar-Tigger 166567 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 175.333-11 chr14 53461726 53461858 + 1.5 NA Intergenic Intergenic 308438 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 300.167-4 chr14 42097289 42097545 + 1.5 NA Intergenic Intergenic 490561 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 227.5-4 chr1 40801925 40802211 + 1.5 NA intron (NM_004700, intron 1 of 13) intron (NM_004700, intron 1 of 13) 18281 NM_172163 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 189.166 chr4 31750936 31751068 + 1.5 NA Intergenic Intergenic 244458 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 295.5-3 chr12 52083378 52083633 + 1.5 NA intron (NM_001369216, intron 1 of 2) intron (NM_001369216, intron 1 of 2) -1241 NR_120439 26628 Hs.524431 NR_120438 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 673.334 chr15 67303359 67304268 + 1.5 NA intron (NM_001322475, intron 3 of 17) intron (NM_001322475, intron 3 of 17) -48615 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 260.834-4 chr9 97409414 97409642 + 1.5 NA Intergenic Intergenic -2568 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 370.5-13 chr8 31440751 31441186 + 1.5 NA Intergenic Intergenic -198784 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 227.5-29 chr5 93717172 93717378 + 1.5 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) 24325 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 379-8 chr5 35093352 35093840 + 1.5 NA intron (NR_037910, intron 1 of 7) intron (NR_037910, intron 1 of 7) 24526 NM_001204316 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 563 chr3 180646101 180646776 + 1.5 NA intron (NM_181426, intron 11 of 19) intron (NM_181426, intron 11 of 19) 33051 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 246.5-6 chr13 59344484 59344758 + 1.5 NA Intergenic Intergenic -668097 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 164.5-32 chr2 229589029 229589186 + 1.5 NA intron (NM_139072, intron 2 of 12) intron (NM_139072, intron 2 of 12) 125448 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 211-8 chr11 72101353 72101590 + 1.5 NA intron (NM_017907, intron 1 of 4) MIRc|SINE|MIR 1826 NM_017907 55004 Hs.731528 NM_017907 ENSG00000149357 LAMTOR1 C11orf59|PDRO|Ragulator1|p18|p27RF-Rho late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding 259.5-30 chr6 10582290 10582586 + 1.5 NA intron (NM_001491, intron 1 of 2) (AT)n|Simple_repeat|Simple_repeat -3322 NM_145655 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 265.5 chr1 11785140 11785745 + 1.5 NA TTS (NM_005957) TTS (NM_005957) -5823 NR_126000 102724659 Hs.737635 NR_126000 ENSG00000177553 LOC102724659 - uncharacterized LOC102724659 ncRNA 212.166-6 chr2 109187217 109187616 + 1.5 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -45828 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 269.667-20 chr4 106238799 106239094 + 1.5 NA intron (NM_001290768, intron 13 of 26) L1MCa|LINE|L1 -76664 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 257-10 chr12 47063043 47063338 + 1.5 NA Intergenic LTR54|LTR|ERV1 -16413 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 433-4 chr13 48321550 48321887 + 1.5 NA intron (NM_000321, intron 2 of 26) AluSq2|SINE|Alu 17971 NM_000321 5925 Hs.408528 NM_000321 ENSG00000139687 RB1 OSRC|PPP1R130|RB|p105-Rb|pRb|pp110 RB transcriptional corepressor 1 protein-coding 255.5-21 chr2 226622484 226622654 + 1.5 NA Intergenic Intergenic 36224 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 302-18 chr4 140021465 140021782 + 1.5 NA intron (NM_018717, intron 1 of 4) intron (NM_018717, intron 1 of 4) -106392 NR_147610 101927516 Hs.662570 NR_147610 LOC101927516 - uncharacterized LOC101927516 ncRNA 297.834-4 chr16 56990436 56990783 + 1.5 NA intron (NM_001330552, intron 1 of 47) intron (NM_001330552, intron 1 of 47) 1052 NM_001330552 84166 Hs.528836 NM_032206 ENSG00000140853 NLRC5 CLR16.1|NOD27|NOD4 NLR family CARD domain containing 5 protein-coding 250.5-19 chr4 52372602 52372884 + 1.5 NA Intergenic Intergenic 283796 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 376.667-6 chr4 53284281 53284928 + 1.5 NA intron (NM_152540, intron 3 of 8) intron (NM_152540, intron 3 of 8) 81457 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 227.667-45 chrX 65027918 65028127 + 1.5 NA intron (NM_001178032, intron 1 of 4) LTR84a|LTR|ERVL 6719 NM_001243804 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 236.667-28 chr6 169520397 169520671 + 1.5 NA intron (NR_146875, intron 19 of 20) L1MA4|LINE|L1 181495 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 311.667-8 chr17 52658886 52659170 + 1.5 NA Intergenic Intergenic -203093 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 239.833-20 chr9 36995969 36996241 + 1.5 NA intron (NM_001280554, intron 4 of 8) intron (NM_001280554, intron 4 of 8) 38163 NM_001280553 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 237.5-3 chr1 51556887 51557083 + 1.5 NA Intergenic L1MA3|LINE|L1 26746 NR_161259 441884 NR_161259 CALR4P - calreticulin 4, pseudogene pseudo 414.834-3 chr12 10725096 10725542 + 1.5 NA Intergenic Intergenic -1996 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 312-4 chr11 33102830 33103219 + 1.5 NA intron (NM_001326, intron 9 of 20) intron (NM_001326, intron 9 of 20) 26874 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 290.334-12 chr7 113677202 113677561 + 1.5 NA Intergenic Intergenic 241628 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 179.833 chr1 27008782 27008955 + 1.5 NA intron (NM_052943, intron 1 of 1) AluSx1|SINE|Alu 3982 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 TENT5B FAM46B terminal nucleotidyltransferase 5B protein-coding 268-34 chr7 55086271 55086547 + 1.5 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -23430 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 286.5-16 chrX 13652456 13652831 + 1.5 NA promoter-TSS (NM_001297563) promoter-TSS (NM_001297563) -498 NM_001297563 170082 Hs.222855 NM_152634 ENSG00000176896 TCEANC - transcription elongation factor A N-terminal and central domain containing protein-coding 333.5-4 chr12 60798048 60798398 + 1.5 NA Intergenic Intergenic 1108853 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 399.334-7 chr9 71310010 71310409 + 1.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 136762 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 233.5-24 chr3 1224379 1224573 + 1.5 NA intron (NM_001289080, intron 3 of 22) L1MA6|LINE|L1 131452 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 272.333-2 chr1 185681289 185681505 + 1.5 NA Intergenic Intergenic -52909 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 488.333-3 chr2 210195602 210196265 + 1.5 NA intron (NM_001608, intron 8 of 10) intron (NM_001608, intron 8 of 10) -24524 NM_152519 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 185.5-31 chr5 32580420 32580566 + 1.5 NA Intergenic Intergenic -5064 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 211.5-14 chr12 98491138 98491364 + 1.5 NA intron (NR_038383, intron 3 of 3) intron (NR_038383, intron 3 of 3) 12604 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LINC02453 - long intergenic non-protein coding RNA 2453 ncRNA 235.834-8 chr3 197947343 197947527 + 1.5 NA intron (NM_001323029, intron 2 of 11) L2b|LINE|L2 2490 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 341.166-2 chr8 95792712 95793096 + 1.5 NA intron (NR_038206, intron 3 of 4) intron (NR_038206, intron 3 of 4) 155444 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 387.167-6 chr4 89143230 89143616 + 1.5 NA Intergenic Intergenic 30606 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 222.5 chr1 24745105 24745303 + 1.5 NA promoter-TSS (NM_013943) promoter-TSS (NM_013943) -243 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 261.666-10 chr3 134977460 134977725 + 1.5 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 182332 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 405.5-7 chr5 10724633 10725149 + 1.5 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 36343 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 228.667-39 chr5 58579359 58579707 + 1.5 NA Intergenic Intergenic -2619 NM_001317915 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 312.5-16 chr4 118353032 118353500 + 1.5 NA promoter-TSS (NM_003619) promoter-TSS (NM_003619) -263 NM_003619 8492 Hs.445857 NM_003619 ENSG00000164099 PRSS12 BSSP-3|BSSP3|MRT1 serine protease 12 protein-coding 167.167-11 chr11 10015092 10015322 + 1.5 NA intron (NM_030962, intron 6 of 39) L1MC4a|LINE|L1 176065 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 326-19 chr8 105443350 105443757 + 1.5 NA intron (NM_001362837, intron 2 of 7) intron (NM_001362837, intron 2 of 7) 124010 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 199.667-32 chr4 60799844 60800169 + 1.5 NA Intergenic LTR33A|LTR|ERVL -122613 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 334.5-8 chr13 41985591 41985929 + 1.5 NA Intergenic Intergenic 24591 NR_039974 100507240 Hs.147766 NR_039974 ENSG00000278338 VWA8-AS1 - VWA8 antisense RNA 1 (head to head) ncRNA 290.5-27 chr9 37897482 37897870 + 1.5 NA intron (NM_033412, intron 2 of 2) (ATTATA)n|Simple_repeat|Simple_repeat 6451 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 211.167-28 chr8 114047858 114048376 + 1.5 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -611178 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 391.5-2 chr14 43220739 43221223 + 1.5 NA Intergenic Intergenic 1286302 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 274.167-3 chr1 61437388 61437693 + 1.5 NA intron (NM_001134673, intron 10 of 10) MIR|SINE|MIR -184022 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 247.167-5 chr14 26932011 26932421 + 1.5 NA Intergenic LTR101_Mam|LTR|ERVL 23574 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 281.5-3 chr10 118541844 118542100 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 53676 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 223.333-25 chr2 126514063 126514375 + 1.5 NA Intergenic Intergenic -141716 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 485.5-4 chr21 25328953 25329435 + 1.5 NA Intergenic Intergenic 102507 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 313.333-16 chr6 155862591 155862960 + 1.5 NA Intergenic L1PA16|LINE|L1 -84022 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 262.834-8 chr9 109119928 109120140 + 1.5 NA promoter-TSS (NM_032012) promoter-TSS (NM_032012) -87 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 301.5-10 chr16 57245073 57245377 + 1.5 NA promoter-TSS (NM_012106) promoter-TSS (NM_012106) -34 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 253.5-35 chr8 107325832 107326140 + 1.5 NA intron (NM_001199859, intron 3 of 8) intron (NM_001199859, intron 3 of 8) 10529 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 327.833-13 chr6 52286568 52286973 + 1.5 NA Intergenic Intergenic -2028 NM_001366372 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 198.5-40 chr6 48064680 48064881 + 1.5 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 3909 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 279-10 chr14 65711581 65711983 + 1.5 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 240680 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 306.5-10 chr18 73532546 73532824 + 1.5 NA Intergenic Intergenic 207744 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 267.5-41 chr9 23951102 23951414 + 1.5 NA Intergenic AluJb|SINE|Alu -100657 NM_001351462 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 323.5-14 chr5 137321270 137321562 + 1.5 NA intron (NM_004598, intron 2 of 10) L1MB1|LINE|L1 177910 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 164.5-7 chr10 68449197 68449403 + 1.5 NA intron (NM_001080449, intron 6 of 20) UCON60|Unknown|Unknown 22673 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 225.833-12 chr18 5029867 5030255 + 1.5 NA Intergenic Intergenic -51121 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 307.667-17 chr5 106468938 106469151 + 1.5 NA Intergenic L1MA4|LINE|L1 541970 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 240.5-24 chr7 20468292 20468507 + 1.5 NA Intergenic L2b|LINE|L2 -136637 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 461 chr1 66924921 66925336 + 1.5 NA promoter-TSS (NM_207014) promoter-TSS (NM_207014) 138 NM_001077703 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 763.5-2 chr2 146661582 146662473 + 1.5 NA Intergenic Intergenic 74970 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 322.5-7 chr15 75939074 75939512 + 1.5 NA non-coding (NR_037623, exon 6 of 6) non-coding (NR_037623, exon 6 of 6) 35415 NR_037623 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 441.833 chr10 60776349 60776731 + 1.5 NA Intergenic Intergenic -1791 NM_001170406 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 234.667-4 chr11 58731475 58731698 + 1.5 NA intron (NM_201648, intron 1 of 5) L1MA9|LINE|L1 357 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 241-11 chr2 100285073 100285273 + 1.5 NA intron (NM_198461, intron 11 of 11) intron (NM_198461, intron 11 of 11) 37560 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 344-12 chr2 54808852 54809250 + 1.5 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 84039 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 394-4 chr16 3932854 3933347 + 1.5 NA Intergenic AluSq2|SINE|Alu 17344 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 244.5-21 chr20 7922212 7922454 + 1.5 NA intron (NM_017545, intron 2 of 7) L1M2|LINE|L1 18125 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 471-4 chr2 231713389 231714263 + 1.5 NA TTS (NR_036052).4 TTS (NR_036052).4 512 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 243.667-28 chr20 1366046 1366430 + 1.5 NA intron (NR_040047, intron 1 of 2) intron (NR_040047, intron 1 of 2) 26723 NR_106929 102465524 NR_106929 ENSG00000284436 MIR6869 hsa-mir-6869 microRNA 6869 ncRNA 304.334-5 chr12 117173308 117173753 + 1.5 NA intron (NM_015002, intron 6 of 11) L4_A_Mam|LINE|RTE-X 16940 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 666 chr3 129160671 129161724 + 1.5 NA promoter-TSS (NM_020701) promoter-TSS (NM_020701) 33 NM_001204890 100534599 Hs.512661 NM_001204890 ENSG00000261796 ISY1-RAB43 ISY1 ISY1-RAB43 readthrough protein-coding 272-7 chr1 188735962 188736270 + 1.5 NA Intergenic Intergenic 1292488 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 213.334-10 chr3 192442438 192442662 + 1.5 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -33501 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 243.5-29 chr6 157876900 157877175 + 1.5 NA intron (NM_016224, intron 4 of 17) intron (NM_016224, intron 4 of 17) 53791 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 264.5-14 chr2 175251969 175252403 + 1.5 NA Intergenic Intergenic -70476 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 223.333-21 chr2 35232597 35232855 + 1.5 NA Intergenic L1PA13|LINE|L1 -238679 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 450-5 chr19 4812900 4813473 + 1.5 NA Intergenic Intergenic 18556 NM_182919 148022 Hs.29344 NM_014261 ENSG00000127666 TICAM1 IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF toll like receptor adaptor molecule 1 protein-coding 286-8 chr19 13557758 13558054 + 1.5 NA Intergenic Intergenic -51427 NM_001174080 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 299.5-15 chr4 46061080 46061284 + 1.5 NA intron (NM_173536, intron 5 of 8) intron (NM_173536, intron 5 of 8) 62872 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 207-22 chr3 172760465 172760637 + 1.5 NA intron (NM_001349095, intron 7 of 25) AluJo|SINE|Alu 9549 NM_001349096 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 415.666-2 chr22 27460549 27461038 + 1.5 NA Intergenic Intergenic 150142 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 274-41 chr9 73353490 73353791 + 1.5 NA Intergenic Intergenic 201775 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 293.333-9 chr14 79367492 79367905 + 1.5 NA intron (NM_001105250, intron 1 of 6) MIRb|SINE|MIR 88318 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 442.833-7 chrX 49191004 49191850 + 1.5 NA intron (NM_003179, intron 6 of 6) CpG -5054 NM_006150 4007 Hs.732712 NM_006150 ENSG00000012211 PRICKLE3 LMO6|Pk3 prickle planar cell polarity protein 3 protein-coding 323.834-5 chr4 59831803 59832055 + 1.5 NA Intergenic Intergenic 818356 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 379.5-8 chr4 139497895 139498480 + 1.5 NA intron (NM_001306199, intron 7 of 7) MER74A|LTR|ERVL 44066 NM_031296 83452 Hs.591679 NM_031296 ENSG00000172007 RAB33B SMC2 RAB33B, member RAS oncogene family protein-coding 258.5-11 chr12 113215192 113215462 + 1.5 NA intron (NM_001330452, intron 1 of 4) MIRb|SINE|MIR 5767 NM_001330452 115811 Hs.568276 NM_138451 ENSG00000166578 IQCD 4933433C09Rik|CFAP84|DRC10 IQ motif containing D protein-coding 189.333-26 chr3 109945175 109945334 + 1.5 NA Intergenic L1ME2|LINE|L1 342426 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 305.667-18 chr7 6305279 6305660 + 1.5 NA Intergenic Intergenic -32845 NM_001367580 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 180-25 chr17 48817606 48817843 + 1.5 NA promoter-TSS (NM_001366314) promoter-TSS (NM_001366314) -495 NM_001130918 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 252-13 chr11 20397186 20397452 + 1.5 NA intron (NM_005788, intron 6 of 15) intron (NM_005788, intron 6 of 15) 9603 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 254.5 chr1 59999373 59999663 + 1.5 NA intron (NM_152377, intron 10 of 11) intron (NM_152377, intron 10 of 11) -72720 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 299.333-10 chr17 3104971 3105214 + 1.5 NA Intergenic Intergenic -11501 NM_001348201 8389 NM_001348201 OR1E3 OR17-210|OR1E3P olfactory receptor family 1 subfamily E member 3 (gene/pseudogene) protein-coding 362.333-9 chr17 48131169 48131621 + 1.5 NA Intergenic Intergenic 23810 NM_013323 29916 Hs.15827 NM_013323 ENSG00000002919 SNX11 - sorting nexin 11 protein-coding 231.167-9 chr11 93783154 93783464 + 1.5 NA promoter-TSS (NM_004268) promoter-TSS (NM_004268) -973 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|SRB4|TRAP80 mediator complex subunit 17 protein-coding 169.833-8 chr12 14395869 14396069 + 1.5 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 10688 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 545.667-3 chr5 134586919 134587413 + 1.5 NA Intergenic Intergenic 45662 NM_001033503 51128 Hs.432984 NM_016103 ENSG00000152700 SAR1B ANDD|CMRD|GTBPB|SARA2 secretion associated Ras related GTPase 1B protein-coding 269-22 chr4 187606662 187606933 + 1.5 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) 65844 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 259.333-16 chr16 84730635 84730929 + 1.5 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 30782 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 240.5-23 chr6 149897427 149897601 + 1.5 NA intron (NR_045127, intron 2 of 2) intron (NR_045127, intron 2 of 2) -1455 NM_001243328 135250 Hs.511818 NM_139165 ENSG00000164520 RAET1E LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7 retinoic acid early transcript 1E protein-coding 173-46 chrX 76005139 76005392 + 1.5 NA Intergenic L1PA2|LINE|L1 -167664 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 296.333-18 chr6 39415217 39415569 + 1.5 NA intron (NM_001289024, intron 2 of 9) Kanga1c|DNA|TcMar-Tc2 15997 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 296.833-7 chr6 73580182 73580427 + 1.5 NA Intergenic Intergenic -59272 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 216.667-51 chr8 117031075 117031271 + 1.5 NA intron (NM_001172813, intron 2 of 10) MIRb|SINE|MIR 80198 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 361-17 chr9 38760464 38760825 + 1.5 NA Intergenic L1MCb|LINE|L1 139556 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 317.333-9 chr2 155463003 155463354 + 1.5 NA Intergenic L1ME5|LINE|L1 764483 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 372.666-8 chr3 121749484 121749748 + 1.5 NA intron (NM_001256486, intron 1 of 21) CpG 125 NM_001256487 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 230.667-14 chr2 36886486 36886957 + 1.5 NA exon (NM_003162, exon 8 of 18) exon (NM_003162, exon 8 of 18) 79815 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 314.5-5 chr11 101967353 101967727 + 1.5 NA intron (NM_001363543, intron 7 of 11) L2|LINE|L2 -51018 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 336.167-6 chr6 160992516 160992919 + 1.5 NA intron (NM_005922, intron 1 of 26) intron (NM_005922, intron 1 of 26) 948 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 271-20 chr3 76607681 76607886 + 1.5 NA Intergenic L2a|LINE|L2 -432316 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 231.667-5 chr14 54174814 54175099 + 1.5 NA Intergenic Intergenic -218065 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 350.5 chr10 55285038 55285344 + 1.5 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -313851 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 326.167-6 chr17 71350707 71351169 + 1.5 NA Intergenic L1ME3A|LINE|L1 -148759 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 269-30 chr8 81686096 81686349 + 1.5 NA intron (NM_001144878, intron 1 of 9) CpG 103 NM_005536 3612 Hs.656694 NM_005536 ENSG00000133731 IMPA1 IMP|IMPA|MRT59 inositol monophosphatase 1 protein-coding 486.5-4 chr14 72023725 72024192 + 1.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 90431 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 349.334-3 chr11 96403533 96403796 + 1.5 NA Intergenic L1MB7|LINE|L1 13651 NM_003772 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 430-4 chr4 71553731 71554449 + 1.5 NA intron (NM_003759, intron 17 of 22) intron (NM_003759, intron 17 of 22) 215037 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 204.167-2 chr10 114174976 114175291 + 1.5 NA promoter-TSS (NM_153249) promoter-TSS (NM_153249) -913 NM_153249 55088 Hs.159066 NM_018017 ENSG00000165813 CCDC186 C10orf118|CCCP-1|golgin104 coiled-coil domain containing 186 protein-coding 362.833-8 chr7 64953064 64953400 + 1.5 NA Intergenic Intergenic 37804 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 289.667-2 chr1 24688379 24688770 + 1.5 NA Intergenic MER104|DNA|TcMar-Tc2 44995 NM_001366597 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 192.166 chr4 85264313 85264669 + 1.5 NA Intergenic AluSx1|SINE|Alu -210659 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 203.167 chr1 163370031 163370347 + 1.5 NA Intergenic Intergenic 48235 NM_145697 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 259-21 chr2 73349083 73349458 + 1.5 NA Intergenic L1ME3A|LINE|L1 -36488 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 250.666-7 chrX 45733050 45733381 + 1.5 NA Intergenic L1MA7|LINE|L1 2127 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 333.5-7 chr14 81221146 81221428 + 1.5 NA promoter-TSS (NR_135252) promoter-TSS (NR_135252) 69 NR_135252 101928504 Hs.510068 NR_135252 LOC101928504 - uncharacterized LOC101928504 ncRNA 194-25 chr20 18496794 18496987 + 1.5 NA intron (NM_006606, intron 1 of 4) intron (NM_006606, intron 1 of 4) 335 NM_006606 10741 Hs.69330 NM_006606 ENSG00000089050 RBBP9 BOG|RBBP10 RB binding protein 9, serine hydrolase protein-coding 274.334-2 chr1 86023583 86023895 + 1.5 NA intron (NM_152890, intron 14 of 59) intron (NM_152890, intron 14 of 59) 132732 NR_146344 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 343.833-5 chr16 31073829 31074421 + 1.5 NA promoter-TSS (NM_014699) promoter-TSS (NM_014699) 115 NM_024706 79759 Hs.102928 NM_024706 ENSG00000167394 ZNF668 - zinc finger protein 668 protein-coding 254.834-4 chr2 99683641 99683880 + 1.5 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -193743 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 317.333-8 chr2 66165702 66166124 + 1.5 NA Intergenic MLT2B2|LTR|ERVL 192415 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 194.333-6 chr1 115576293 115576468 + 1.5 NA Intergenic Intergenic -65590 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 217.167-8 chr12 54787948 54788159 + 1.5 NA Intergenic Intergenic -66463 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 305.5-18 chr6 111230800 111231161 + 1.5 NA 3' UTR (NM_018593, exon 6 of 6) 3' UTR (NM_018593, exon 6 of 6) -28359 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 423.334-5 chr22 35623086 35623874 + 1.5 NA promoter-TSS (NM_001362846) promoter-TSS (NM_001362846) -126 NM_203377 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 324 chr1 151539840 151540276 + 1.5 NA promoter-TSS (NM_001301317) promoter-TSS (NM_001301317) -251 NM_001126337 7286 Hs.489922 NM_020127 ENSG00000143367 TUFT1 - tuftelin 1 protein-coding 258-19 chr2 127067851 127068190 + 1.5 NA intron (NM_139349, intron 6 of 14) intron (NM_139349, intron 6 of 14) 14045 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 409.5-6 chr2 188984417 188984889 + 1.5 NA intron (NM_000090, intron 1 of 50) intron (NM_000090, intron 1 of 50) -6492 NR_039947 100616324 NR_039947 ENSG00000283238 MIR1245B - microRNA 1245b ncRNA 215.5-27 chr8 62016176 62016428 + 1.5 NA Intergenic MIRb|SINE|MIR 126463 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 271.5-39 chr7 89515781 89516025 + 1.5 NA Intergenic Intergenic -603497 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 357-10 chr22 22210186 22210505 + 1.5 NA Intergenic Intergenic -34441 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 260.167-23 chr8 50415758 50416056 + 1.5 NA intron (NR_135795, intron 4 of 18) intron (NR_135795, intron 4 of 18) 251776 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 591-4 chrX 16892981 16893618 + 1.5 NA Intergenic Intergenic -22937 NM_002893 5931 Hs.495755 NM_002893 ENSG00000102054 RBBP7 RbAp46 RB binding protein 7, chromatin remodeling factor protein-coding 179.5-30 chr3 67050331 67050617 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 52167 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 516.333-2 chr2 166056916 166057418 + 1.5 NA intron (NR_148667, intron 4 of 28) MIR|SINE|MIR -24364 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 268.5-17 chr2 16538485 16538666 + 1.5 NA Intergenic Intergenic 127259 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 491.833-4 chr9 91508393 91508813 + 1.5 NA Intergenic Intergenic -83977 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 299.833 chr1 42302478 42302813 + 1.5 NA intron (NM_001198850, intron 2 of 12) L1PA15-16|LINE|L1 32310 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 448.666 chr7 94395614 94396056 + 1.5 NA intron (NM_000089, intron 1 of 51) intron (NM_000089, intron 1 of 51) 1274 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 319.334-4 chr11 58239991 58240427 + 1.5 NA Intergenic L1MA4|LINE|L1 -11291 NM_001004471 219960 Hs.553646 NM_001004471 ENSG00000180475 OR10Q1 OR11-233 olfactory receptor family 10 subfamily Q member 1 protein-coding 251.333-27 chr7 105656754 105657043 + 1.5 NA intron (NM_001318229, intron 3 of 9) intron (NM_001318229, intron 3 of 9) 22257 NM_001318229 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 230.5-9 chr16 78659827 78660139 + 1.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 560329 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 268.167-18 chr6 144092319 144092592 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie 3118 NM_031287 83443 Hs.110695 NM_031287 ENSG00000169976 SF3B5 SF3b10|Ysf3 splicing factor 3b subunit 5 protein-coding 282.834 chr14 46628523 46628841 + 1.5 NA Intergenic Intergenic 23099 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 238.5-3 chr1 171048802 171048995 + 1.5 NA intron (NM_001163629, intron 20 of 21) L1MA1|LINE|L1 -42007 NM_001002294 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 177.667-12 chr14 50599951 50600161 + 1.5 NA intron (NM_015915, intron 6 of 13) intron (NM_015915, intron 6 of 13) 40031 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 278.667-22 chr3 36959742 36960061 + 1.5 NA Intergenic Intergenic -14847 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 186.833-22 chr8 34572907 34573041 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -210947 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 255.5-8 chr11 118425057 118425299 + 1.5 NA Intergenic Intergenic -6363 NR_046370 100131626 Hs.721614 NR_046369 LOC100131626 - uncharacterized LOC100131626 ncRNA 269.5-25 chr7 149743479 149743752 + 1.5 NA Intergenic Intergenic 28604 NM_032534 84626 Hs.299560 NM_032534 ENSG00000133619 KRBA1 - KRAB-A domain containing 1 protein-coding 287.667-20 chr22 38656410 38656847 + 1.5 NA promoter-TSS (NM_015373) promoter-TSS (NM_015373) -25 NM_001002880 25776 Hs.334911 NM_015373 ENSG00000100211 CBY1 C22orf2|CBY|Chibby1|HS508I15A|PGEA1|PIGEA-14|PIGEA14|arb1 chibby family member 1, beta catenin antagonist protein-coding 337.333-7 chr2 85832719 85833238 + 1.5 NA Intergenic AluY|SINE|Alu 17848 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 221-12 chr14 83070343 83070644 + 1.5 NA Intergenic L1MA9|LINE|L1 427861 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 196.5-20 chr2 138854060 138854274 + 1.5 NA Intergenic Intergenic -43157 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 412.334-4 chr18 11741398 11741757 + 1.5 NA intron (NM_182978, intron 1 of 11) L2c|LINE|L2 -9895 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 188.833-33 chr6 54610742 54610949 + 1.5 NA Intergenic MIR|SINE|MIR -235926 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 279.5-14 chr3 52638053 52638337 + 1.5 NA intron (NM_001366074, intron 13 of 30) L1M5|LINE|L1 47404 NM_001350077 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 364-8 chr2 110666197 110666704 + 1.5 NA intron (NM_001278616, intron 7 of 23) intron (NM_001278616, intron 7 of 23) -8201 NR_132975 106635550 NR_132975 SNORD132 - small nucleolar RNA, C/D box 132 snoRNA 184.333-36 chr7 52203550 52203691 + 1.5 NA Intergenic Intergenic -810364 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 245.833-19 chr4 84585578 84585760 + 1.5 NA intron (NM_001263, intron 1 of 12) intron (NM_001263, intron 1 of 12) 2542 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 262.001 chr2 27051234 27051563 + 1.5 NA promoter-TSS (NM_001035507) promoter-TSS (NM_001035507) -25 NR_138023 60509 Hs.138207 NM_021831 ENSG00000084693 AGBL5 CCP5|RP75 ATP/GTP binding protein like 5 protein-coding 686.333-2 chr14 41280699 41281777 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -325618 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 224-20 chr18 12502270 12502520 + 1.5 NA intron (NM_020148, intron 6 of 15) intron (NM_020148, intron 6 of 15) 69621 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 256.333-5 chr11 84809429 84809766 + 1.5 NA intron (NM_001351274, intron 5 of 26) L1MD1|LINE|L1 -88655 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 466-4 chr4 83074158 83074675 + 1.5 NA intron (NM_001330727, intron 10 of 10) intron (NM_001330727, intron 10 of 10) 35473 NM_001130716 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 283.5-5 chr15 70924091 70924321 + 1.5 NA intron (NM_017691, intron 7 of 15) intron (NM_017691, intron 7 of 15) 31763 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 248.499-3 chr2 99889140 99889388 + 1.5 NA intron (NM_001025108, intron 6 of 23) FAM|SINE|Alu 216319 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 315.833-11 chr6 70408559 70408963 + 1.5 NA Intergenic L1MEc|LINE|L1 -4643 NM_001351599 57579 Hs.211700 NM_020819 ENSG00000082269 FAM135A KIAA1411 family with sequence similarity 135 member A protein-coding 339.833-5 chr16 84066973 84067259 + 1.5 NA intron (NM_003791, intron 16 of 22) intron (NM_003791, intron 16 of 22) -24959 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 271.833-9 chr2 70202256 70202595 + 1.5 NA Intergenic HERVL18-int|LTR|ERVL -11406 NM_001348760 54980 Hs.720049 NM_017880 ENSG00000115998 C2orf42 - chromosome 2 open reading frame 42 protein-coding 336.667-11 chr6 126771706 126772232 + 1.5 NA Intergenic Intergenic 287338 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 176-20 chr2 43906004 43906224 + 1.5 NA intron (NM_133259, intron 30 of 37) intron (NM_133259, intron 30 of 37) 67143 NM_001357321 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 329.5-16 chr5 23649825 23650093 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR 142304 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 187.833-20 chr5 102296384 102296628 + 1.5 NA promoter-TSS (NM_180991) promoter-TSS (NM_180991) -222 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 579.833-2 chr12 17640961 17641757 + 1.5 NA Intergenic Intergenic -31940 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 397-4 chr14 45718095 45718449 + 1.5 NA Intergenic Intergenic -2670 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 235.5-10 chr18 68781155 68781502 + 1.5 NA intron (NM_001093729, intron 3 of 9) intron (NM_001093729, intron 3 of 9) -16752 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 242.5-43 chr7 25231055 25231323 + 1.5 NA Intergenic LTR41C|LTR|ERVL -2703 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 273.333-12 chr3 168024258 168024519 + 1.5 NA intron (NM_001308155, intron 13 of 14) intron (NM_001308155, intron 13 of 14) 71536 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 295-29 chr8 126234250 126234486 + 1.5 NA Intergenic Intergenic -91127 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 305.833 chr1 155859133 155859406 + 1.5 NA promoter-TSS (NM_152280) promoter-TSS (NM_152280) 131 NM_001282856 54856 Hs.656361 NM_032292 ENSG00000116580 GON4L GON-4|GON4|YARP gon-4 like protein-coding 404.334-8 chr4 117560547 117561118 + 1.5 NA intron (NR_125757, intron 2 of 3) L3|LINE|CR1 132434 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 320.5-20 chr9 31140300 31140544 + 1.5 NA Intergenic Intergenic 241068 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 263.5-25 chr5 154857856 154858134 + 1.5 NA promoter-TSS (NM_001301073) promoter-TSS (NM_001301073) -254 NM_001301083 9337 Hs.26703 NM_004779 ENSG00000155508 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex subunit 8 protein-coding 175.5-10 chr12 10751211 10751360 + 1.5 NA intron (NR_120463, intron 1 of 6) intron (NR_120463, intron 1 of 6) 1051 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 199.833-20 chr3 43690870 43691178 + 1.5 NA promoter-TSS (NM_001355186) promoter-TSS (NM_001355186) -74 NM_001365649 51099 Hs.19385 NM_016006 ENSG00000011198 ABHD5 CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 287-26 chr6 122895265 122895465 + 1.5 NA Intergenic Intergenic -100870 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 291.666-3 chr9 32645023 32645386 + 1.5 NA Intergenic Intergenic -9535 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 175.5-3 chr1 178126807 178127042 + 1.5 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 32820 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 423.001-3 chr3 127879639 127880250 + 1.5 NA Intergenic L1MEf|LINE|L1 -35288 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 313.5-24 chr8 110411482 110411795 + 1.5 NA Intergenic Intergenic -435867 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 424.333 chr14 57147268 57147632 + 1.5 NA Intergenic Intergenic 121455 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 287.833-2 chr1 225602808 225603015 + 1.5 NA intron (NM_001008493, intron 1 of 14) L1ME3A|LINE|L1 50212 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 321.333-14 chr7 69189764 69190139 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 407673 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 209-44 chr8 132702600 132702765 + 1.5 NA Intergenic MIRb|SINE|MIR -27137 NM_001321961 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 286.833-2 chr1 227943784 227944005 + 1.5 NA intron (NM_003395, intron 1 of 3) AluJb|SINE|Alu -2211 NR_049806 100847072 NR_049806 ENSG00000264483 MIR5008 - microRNA 5008 ncRNA 486.667 chr10 51960542 51961164 + 1.5 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -261258 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 262.833-9 chr2 212602420 212602692 + 1.5 NA Intergenic Intergenic -63754 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 342-11 chr4 36400023 36400351 + 1.5 NA Intergenic Intergenic 26241 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 257.167-9 chr7 30771865 30772055 + 1.5 NA intron (NM_032222, intron 1 of 17) intron (NM_032222, intron 1 of 17) 543 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 332.833-8 chr15 47040358 47040655 + 1.5 NA Intergenic Intergenic -143583 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 234.167-11 chr15 60324049 60324267 + 1.5 NA Intergenic Intergenic 73828 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 384.499-2 chr20 17958467 17958742 + 1.5 NA intron (NM_001282454, intron 1 of 12) intron (NM_001282454, intron 1 of 12) 4342 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 262.167-3 chr11 75562505 75562823 + 1.5 NA intron (NM_001235, intron 1 of 4) intron (NM_001235, intron 1 of 4) 411 NM_001235 871 Hs.596449 NM_001235 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46 serpin family H member 1 protein-coding 326-12 chr4 177741378 177741714 + 1.5 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 12789 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 221.5-6 chr10 50419827 50420037 + 1.5 NA intron (NM_147156, intron 6 of 10) MIR3|SINE|MIR -171322 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 383.001 chr3 19539608 19540045 + 1.5 NA Intergenic Intergenic -224895 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 380-9 chr19 32799834 32800180 + 1.5 NA intron (NM_001366102, intron 16 of 32) AluSg|SINE|Alu 69760 NM_001126335 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 205-33 chrX 153090639 153090882 + 1.5 NA Intergenic L1ME4a|LINE|L1 18346 NM_032882 84968 Hs.533301 NM_032882 ENSG00000235961 PNMA6A MA6|PNMA6|PNMA6C PNMA family member 6A protein-coding 287.5-16 chr4 41043222 41043462 + 1.5 NA intron (NM_001330658, intron 3 of 15) L1ME4a|LINE|L1 171200 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 257-18 chr19 4809018 4809305 + 1.5 NA Intergenic AluSg|SINE|Alu 17427 NM_018708 55527 Hs.515082 NM_018708 ENSG00000141965 FEM1A EPRAP fem-1 homolog A protein-coding 338-8 chr22 40831323 40831604 + 1.5 NA intron (NM_003932, intron 8 of 11) intron (NM_003932, intron 8 of 11) -12064 NR_104237 10478 Hs.474938 NM_006358 ENSG00000100372 SLC25A17 PMP34 solute carrier family 25 member 17 protein-coding 392.5-4 chr11 101428873 101429290 + 1.5 NA Intergenic L1MA6|LINE|L1 90824 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 407.5-13 chr7 100081852 100082298 + 1.5 NA promoter-TSS (NM_001318137) promoter-TSS (NM_001318137) -123 NM_001371213 377.333-5 chr5 96826343 96826810 + 1.5 NA Intergenic Intergenic -12431 NM_001198541 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 216.5-15 chr13 22462353 22462587 + 1.5 NA Intergenic L3|LINE|CR1 252185 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 165.333-14 chr12 9252207 9252503 + 1.5 NA intron (NR_137434, intron 4 of 6) L1PA11|LINE|L1 12352 NR_137431 100499405 Hs.182314 NR_036466 ENSG00000237248 LINC00987 - long intergenic non-protein coding RNA 987 ncRNA 280.167-11 chr3 146065312 146065929 + 1.5 NA TTS (NR_146297) TTS (NR_146297) 3565 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 202.667-31 chr3 162840277 162840597 + 1.5 NA Intergenic L1PB3|LINE|L1 462864 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 245.833-20 chr4 112636135 112636490 + 1.5 NA promoter-TSS (NM_016648) promoter-TSS (NM_016648) -652 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 363.667-6 chr14 73116175 73116471 + 1.5 NA intron (NM_021239, intron 18 of 18) intron (NM_021239, intron 18 of 18) -20184 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 245-23 chr3 49590563 49590786 + 1.5 NA intron (NM_003458, intron 1 of 11) L1MB4|LINE|L1 36197 NM_003458 8927 Hs.194684 NM_003458 ENSG00000164061 BSN ZNF231 bassoon presynaptic cytomatrix protein protein-coding 275.333-13 chr3 112989417 112989804 + 1.5 NA Intergenic LTR7B|LTR|ERV1 -1343 NM_138485 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 367-4 chr11 94992240 94992622 + 1.5 NA intron (NM_018039, intron 2 of 2) L1M5|LINE|L1 18722 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 315-20 chr8 36773753 36774320 + 1.5 NA Intergenic Intergenic -10338 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 624.001 chr2 63861117 63861662 + 1.5 NA intron (NM_001001521, intron 3 of 9) intron (NM_001001521, intron 3 of 9) 19509 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 166.833-32 chr8 52619298 52619426 + 1.5 NA Intergenic L1MB5|LINE|L1 -53932 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 637.333 chr19 38543815 38544628 + 1.5 NA intron (NM_001042723, intron 86 of 104) intron (NM_001042723, intron 86 of 104) -52126 NR_134907 105372397 Hs.570011 NR_134907 ENSG00000267291 LOC105372397 - uncharacterized LOC105372397 ncRNA 353.333-9 chr2 43059441 43059863 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -20109 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 275.5-4 chr1 178796620 178796901 + 1.5 NA intron (NM_152663, intron 4 of 19) intron (NM_152663, intron 4 of 19) 71516 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 259.5-4 chr1 237753460 237753877 + 1.5 NA intron (NM_001035, intron 80 of 104) intron (NM_001035, intron 80 of 104) -108507 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 533.666 chr11 45964638 45965301 + 1.5 NA intron (NR_147890, intron 9 of 18) UCON4|Unknown|Unknown 42313 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 584.334 chr12 3803686 3804293 + 1.5 NA Intergenic Intergenic -50880 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 195.833-7 chr12 31746863 31747072 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie -17793 NR_103522 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 237.5-26 chr20 46715824 46716034 + 1.5 NA intron (NM_030777, intron 1 of 4) AluJr4|SINE|Alu 6280 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 210.167-30 chr7 107821160 107821610 + 1.5 NA Intergenic Intergenic -18152 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 203.667-24 chr2 73347945 73348339 + 1.5 NA Intergenic Intergenic -37616 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 204.5-5 chr10 71197269 71197501 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -15185 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 254.5-14 chr18 7893431 7893751 + 1.5 NA intron (NM_002845, intron 3 of 30) intron (NM_002845, intron 3 of 30) 326275 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 233.667-18 chr17 51235692 51235871 + 1.5 NA intron (NM_017643, intron 2 of 16) L1ME1|LINE|L1 24268 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 380.5-12 chr6 150079588 150080172 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -10759 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 223-10 chr12 21174304 21174586 + 1.5 NA intron (NM_006446, intron 3 of 14) intron (NM_006446, intron 3 of 14) 43251 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 570.833-4 chr7 35424560 35425466 + 1.5 NA Intergenic L1MB1|LINE|L1 111158 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 167.833-31 chr3 22169184 22169396 + 1.5 NA Intergenic MIR|SINE|MIR 212151 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 234-25 chr20 17427448 17428114 + 1.5 NA intron (NM_002594, intron 6 of 11) MLT1H|LTR|ERVL-MaLR 103598 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 179.333-20 chr17 61299945 61300167 + 1.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 67648 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 218.5-6 chr10 92643650 92643943 + 1.5 NA intron (NM_004523, intron 17 of 21) AluSg|SINE|Alu -46159 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 271.5-41 chr8 130264561 130264815 + 1.5 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 31845 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 376.833 chr10 63630564 63630925 + 1.5 NA Intergenic CpG -108854 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 206-12 chr14 36254208 36254436 + 1.5 NA Intergenic LTR86A2|LTR|ERVL 66315 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 307.5-19 chr20 47506637 47506861 + 1.5 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 4862 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 285.5-2 chr1 207251634 207252012 + 1.5 NA Intergenic Intergenic -69855 NM_001300903 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 324-13 chr3 190504582 190505008 + 1.5 NA Intergenic MamRTE1|LINE|RTE-BovB -9290 NM_001167931 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 488.334 chr1 172532812 172533314 + 1.5 NA promoter-TSS (NM_001282751) promoter-TSS (NM_001282751) -55 NM_001282751 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 449.833-2 chr11 27655117 27655693 + 1.5 NA 3' UTR (NM_001143806, exon 2 of 2) 3' UTR (NM_001143806, exon 2 of 2) 4244 NM_001143816 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 167.5-23 chr2 165929377 165929560 + 1.5 NA intron (NM_024753, intron 10 of 28) intron (NM_024753, intron 10 of 28) -4389 NR_038983 100506134 Hs.672319 NR_038983 TTC21B-AS1 - TTC21B antisense RNA 1 ncRNA 239.667-2 chr1 77605992 77606257 + 1.5 NA intron (NM_001308237, intron 4 of 13) L1MA9|LINE|L1 76534 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 306.833-2 chr11 69564803 69565088 + 1.5 NA Intergenic L1ME4a|LINE|L1 -76160 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 293.333-15 chr22 33274198 33274428 + 1.5 NA 3' UTR (NM_004737, exon 16 of 16) 3' UTR (NM_004737, exon 16 of 16) 162356 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 270-35 chr7 7147992 7148233 + 1.5 NA Intergenic L2a|LINE|L2 -34503 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 189.5-16 chr17 49192724 49192966 + 1.5 NA Intergenic CpG 16536 NM_031498 2793 Hs.181781 NM_031498 ENSG00000167083 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 G protein subunit gamma transducin 2 protein-coding 292.167-11 chr20 5100959 5101185 + 1.5 NA intron (NM_001009925, intron 3 of 3) intron (NM_001009925, intron 3 of 3) 12004 NM_001009923 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 238.833-16 chr8 75681308 75681521 + 1.5 NA Intergenic Intergenic 141446 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 289.833-5 chr3 98066302 98066773 + 1.5 NA Intergenic Intergenic -20636 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 276.5-13 chr3 47150943 47151234 + 1.5 NA intron (NR_146158, intron 1 of 21) intron (NR_146158, intron 1 of 21) 12889 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 323.667-13 chr18 74743952 74744365 + 1.5 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 113195 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 354.333-4 chr14 62950315 62950663 + 1.5 NA exon (NM_172375, exon 7 of 10) exon (NM_172375, exon 7 of 10) 94969 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 254.5-24 chr20 58645680 58645955 + 1.5 NA Intergenic Intergenic -5436 NR_037942 8675 Hs.307913 NM_003763 ENSG00000124222 STX16 SYN16 syntaxin 16 protein-coding 182.167-30 chr8 74850887 74851058 + 1.5 NA 3' UTR (NM_001324403, exon 6 of 6) 3' UTR (NM_001324403, exon 6 of 6) 26438 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 275.667-29 chr8 107252760 107252967 + 1.5 NA intron (NM_001199859, intron 8 of 8) intron (NM_001199859, intron 8 of 8) 83652 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 249.667-22 chr4 5278178 5278439 + 1.5 NA intron (NM_001306082, intron 4 of 12) L1MEd|LINE|L1 226828 NM_018401 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 294.5-12 chr14 86922050 86922549 + 1.5 NA non-coding (NR_038445, exon 5 of 5) non-coding (NR_038445, exon 5 of 5) 16521 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 293.5-2 chr1 53199523 53199801 + 1.5 NA intron (NM_000098, intron 1 of 4) intron (NM_000098, intron 1 of 4) 2838 NM_001330589 1376 Hs.713535 NM_000098 ENSG00000157184 CPT2 CPT1|CPTASE|IIAE4 carnitine palmitoyltransferase 2 protein-coding 275.334-6 chr3 122506646 122507012 + 1.5 NA intron (NR_026698, intron 1 of 14) intron (NR_026698, intron 1 of 14) 8110 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 271.667-11 chr15 56497542 56497879 + 1.5 NA Intergenic Intergenic -32573 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 251.5-32 chr8 119354715 119355003 + 1.5 NA Intergenic Intergenic 29688 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 396-8 chr7 128455221 128455846 + 1.5 NA promoter-TSS (NM_013332) promoter-TSS (NM_013332) -297 NM_001098786 29923 Hs.706124 NM_013332 ENSG00000135245 HILPDA C7orf68|HIG-2|HIG2 hypoxia inducible lipid droplet associated protein-coding 368-12 chr8 67086452 67086874 + 1.5 NA intron (NM_001363133, intron 4 of 27) intron (NM_001363133, intron 4 of 27) 2815 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 201-18 chr18 66535802 66535975 + 1.5 NA intron (NM_001271028, intron 7 of 9) (AT)n|Simple_repeat|Simple_repeat 68202 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 244.666-7 chr22 19740092 19740479 + 1.5 NA Intergenic Intergenic -16418 NM_080647 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 172.333-26 chr18 6108925 6109056 + 1.5 NA intron (NM_001365769, intron 14 of 16) MER2|DNA|TcMar-Tigger -147754 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 231.5-28 chr3 98184573 98184822 + 1.5 NA Intergenic L1PA11|LINE|L1 15997 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 715.334 chr2 90069037 90069883 + 1.5 NA Intergenic Intergenic -431553 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 252.333-8 chr18 24487641 24488063 + 1.5 NA Intergenic Intergenic 27215 NM_021624 59340 Hs.287388 NM_021624 ENSG00000134489 HRH4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 331.666-4 chr9 105692350 105692596 + 1.5 NA Intergenic Intergenic -2068 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 249.667-14 chr16 72664740 72665181 + 1.5 NA promoter-TSS (NR_126330) promoter-TSS (NR_126330) 10 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 413-5 chr14 68082836 68083533 + 1.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 259592 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 254.5-12 chr17 79065120 79065451 + 1.5 NA Intergenic L1M5|LINE|L1 -9652 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 282.833-16 chr9 69931331 69931784 + 1.5 NA Intergenic HERVIP10F-int|LTR|ERV1 110740 NR_131757 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 240.667-35 chrX 58026012 58026234 + 1.5 NA Intergenic L1MCb|LINE|L1 -115490 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 394.167-8 chr2 169933270 169933579 + 1.5 NA intron (NM_172070, intron 19 of 38) intron (NM_172070, intron 19 of 38) 105916 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 601.834-3 chr7 112868857 112869769 + 1.5 NA intron (NM_152556, intron 3 of 4) intron (NM_152556, intron 3 of 4) 70562 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 205-16 chr2 197114191 197114415 + 1.5 NA intron (NM_153697, intron 8 of 9) intron (NM_153697, intron 8 of 9) -83688 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 230-14 chr11 116421085 116421460 + 1.5 NA Intergenic Intergenic -218150 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 201.333-4 chr1 192369915 192370195 + 1.5 NA Intergenic Intergenic 53063 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 290.167-17 chr7 40927909 40928192 + 1.5 NA Intergenic L1MEi|LINE|L1 51889 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 259.667-21 chr8 75373794 75374057 + 1.5 NA Intergenic UCON40|Unknown|Unknown -33724 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 351.667-14 chr4 186021387 186021813 + 1.5 NA Intergenic Intergenic -47555 NM_003265 7098 Hs.657724 NM_003265 ENSG00000164342 TLR3 CD283|IIAE2 toll like receptor 3 protein-coding 347-23 chr7 117366837 117367122 + 1.5 NA intron (NM_001301821, intron 12 of 12) intron (NM_001301821, intron 12 of 12) -43921 NR_024047 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 194.833-18 chr2 101277779 101278060 + 1.5 NA intron (NM_173647, intron 6 of 6) intron (NM_173647, intron 6 of 6) -4870 NR_003070 692205 Hs.656503 NR_003070 ENSG00000212283 SNORD89 HBII-289 small nucleolar RNA, C/D box 89 snoRNA 206.333-22 chr2 153822788 153823049 + 1.5 NA Intergenic L1PA15-16|LINE|L1 -49004 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 387.166 chr19 37551361 37551682 + 1.5 NA non-coding (NR_038249, exon 1 of 4) non-coding (NR_038249, exon 1 of 4) 147 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 264.833-12 chr2 26940367 26940712 + 1.5 NA intron (NM_020134, intron 9 of 12) FLAM_C|SINE|Alu -30098 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 249-4 chr10 120706326 120706627 + 1.5 NA Intergenic L1ME2|LINE|L1 108527 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 280-17 chr21 34843870 34844083 + 1.5 NA intron (NM_001001890, intron 3 of 5) intron (NM_001001890, intron 3 of 5) 44723 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 321-19 chr5 40551808 40552517 + 1.5 NA Intergenic Intergenic -127753 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 386.167 chr1 47432208 47432808 + 1.5 NA non-coding (NR_026878, exon 1 of 1) non-coding (NR_026878, exon 1 of 1) 2133 NR_026878 84793 Hs.127762 NM_032707 ENSG00000237424 FOXD2-AS1 - FOXD2 adjacent opposite strand RNA 1 ncRNA 275.667-23 chr6 144608143 144608555 + 1.5 NA intron (NM_007124, intron 50 of 73) MLT2D|LTR|ERVL 202694 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 243.5-24 chr4 92455173 92455466 + 1.5 NA intron (NM_001286838, intron 1 of 14) L2b|LINE|L2 150920 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 273.333-6 chr15 94141332 94141677 + 1.5 NA Intergenic L1ME1|LINE|L1 -33566 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 396.833-8 chr2 119596672 119597059 + 1.5 NA intron (NR_073132, intron 7 of 24) intron (NR_073132, intron 7 of 24) 52416 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 214.833-14 chr4 30963983 30964277 + 1.5 NA intron (NM_001173523, intron 2 of 2) UCON8|DNA|DNA -207014 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 233 chr1 116817710 116818148 + 1.5 NA Intergenic Intergenic 63499 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 209.833-17 chr2 216230868 216231213 + 1.5 NA Intergenic L1M2|LINE|L1 14151 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 172.833-17 chr20 50461732 50462112 + 1.5 NA Intergenic Intergenic -48399 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 680 chr1 108561113 108561719 + 1.5 NA intron (NM_001010883, intron 1 of 10) intron (NM_001010883, intron 1 of 10) 1316 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 190.5-49 chr7 92235727 92235949 + 1.5 NA intron (NM_001013406, intron 6 of 16) intron (NM_001013406, intron 6 of 16) -10136 NM_019004 54467 Hs.83293 NM_019004 ENSG00000001629 ANKIB1 - ankyrin repeat and IBR domain containing 1 protein-coding 256-6 chr12 47135162 47135377 + 1.5 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) -52543 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 382.167-5 chr17 32782519 32782819 + 1.5 NA intron (NM_015194, intron 1 of 21) AluSz|SINE|Alu 94455 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 395.333 chr1 11719739 11720201 + 1.5 NA 3' UTR (NM_198545, exon 7 of 7) 3' UTR (NM_198545, exon 7 of 7) -16115 NM_001040195 57085 Hs.464438 NM_020350 ENSG00000177674 AGTRAP ATRAP angiotensin II receptor associated protein protein-coding 317.5-17 chr9 99078751 99079079 + 1.5 NA Intergenic Intergenic -26198 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 306.501-5 chr20 34146575 34146940 + 1.5 NA Intergenic MER57A-int|LTR|ERV1 -34514 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 253.333-5 chr11 64185709 64185982 + 1.5 NA promoter-TSS (NM_006819) promoter-TSS (NM_006819) -326 NM_006819 10963 Hs.337295 NM_006819 ENSG00000168439 STIP1 HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L stress induced phosphoprotein 1 protein-coding 447.5-7 chrX 42018198 42018609 + 1.5 NA Intergenic Intergenic -94849 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 379.5-4 chr15 69034364 69034777 + 1.5 NA intron (NM_024505, intron 5 of 15) Charlie7|DNA|hAT-Charlie 19875 NM_001184779 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 190.167-25 chr8 130886997 130887231 + 1.5 NA intron (NM_001115, intron 7 of 17) Charlie18a|DNA|hAT-Charlie 153795 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 284.5-23 chr8 70302127 70302378 + 1.5 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 101138 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 272.167-20 chr5 11658713 11658911 + 1.5 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -69746 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 471.333-3 chr5 127250473 127250980 + 1.5 NA Intergenic L1ME4a|LINE|L1 -40038 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 272-32 chrX 3638512 3638833 + 1.5 NA intron (NM_005044, intron 4 of 8) (TAGA)n|Simple_repeat|Simple_repeat -20815 NR_046643 100873944 NR_046643 ENSG00000236188 PRKX-AS1 - PRKX antisense RNA 1 ncRNA 379-5 chr2 216110232 216110542 + 1.5 NA intron (NM_021141, intron 1 of 20) intron (NM_021141, intron 1 of 20) 1039 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 246.333-38 chr7 113359553 113359955 + 1.5 NA Intergenic Intergenic -241172 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 183.167-12 chr16 8706631 8706773 + 1.5 NA intron (NM_020686, intron 1 of 15) AluSz6|SINE|Alu -6267 NM_000663 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 236.5-26 chr3 101836034 101836205 + 1.5 NA intron (NM_001005474, intron 2 of 12) intron (NM_001005474, intron 2 of 12) 8129 NM_001005474 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 186.667-16 chr10 75528669 75528888 + 1.5 NA intron (NM_001305581, intron 2 of 6) HAL1|LINE|L1 -23680 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 230.167-10 chr18 11315353 11315665 + 1.5 NA Intergenic L1M5|LINE|L1 -138969 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 325.5 chr10 121893130 121893378 + 1.5 NA intron (NM_001001976, intron 7 of 11) AluSc8|SINE|Alu 34777 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 174.5-18 chr2 65794408 65794614 + 1.5 NA Intergenic Intergenic -361912 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 185.333-11 chr12 1771723 1771963 + 1.5 NA intron (NM_024551, intron 2 of 7).2 intron (NM_024551, intron 2 of 7).2 -48424 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 219.833-11 chr17 73248992 73249225 + 1.5 NA TTS (NM_001288770) TTS (NM_001288770) 12772 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 254.833-24 chrX 154371228 154371700 + 1.5 NA intron (NM_001110556, intron 1 of 47) CpG-30192 3170 NM_001110556 2316 Hs.195464 NM_001456 ENSG00000196924 FLNA ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD filamin A protein-coding 260.333-3 chr12 7497345 7497594 + 1.5 NA intron (NR_163255, intron 4 of 16) intron (NR_163255, intron 4 of 16) 6308 NR_163255 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 340.667-12 chr7 48592400 48592832 + 1.5 NA intron (NM_152701, intron 57 of 61) L1MA9|LINE|L1 -331931 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 442-7 chr7 36317597 36317991 + 1.5 NA Intergenic Intergenic 49446 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 244.5-32 chr9 106354353 106354648 + 1.5 NA Intergenic L1PA15|LINE|L1 -246428 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 276.667-4 chr1 118567135 118567456 + 1.5 NA Intergenic L1M5|LINE|L1 -382067 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 166.5-44 chr9 77088308 77088448 + 1.5 NA Intergenic L1MA7|LINE|L1 68723 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 250.167-8 chr14 64997817 64998178 + 1.5 NA intron (NM_002028, intron 1 of 11) MER34C_|LTR|ERV1 11102 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 179.333-13 chr15 66909205 66909327 + 1.5 NA Intergenic Intergenic 47249 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 352.834-9 chr6 108527626 108528101 + 1.5 NA Intergenic AluJb|SINE|Alu -31962 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 318.667-7 chr3 36232797 36233161 + 1.5 NA Intergenic Intergenic -147508 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 279.333-4 chr10 80591184 80591490 + 1.5 NA intron (NM_207372, intron 4 of 6) MSTC|LTR|ERVL-MaLR 50518 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 184.167-27 chr3 4058225 4058449 + 1.5 NA Intergenic Intergenic -244967 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 205.833-17 chr2 175905746 175905900 + 1.5 NA Intergenic L1PB4|LINE|L1 96444 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 260-30 chr9 85223594 85223915 + 1.5 NA Intergenic Intergenic 517853 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 237.667-5 chr11 98731590 98731863 + 1.5 NA Intergenic Intergenic -289223 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 288-16 chr2 99664174 99664509 + 1.5 NA intron (NM_001025108, intron 11 of 23) intron (NM_001025108, intron 11 of 23) -174324 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 464.5-2 chr10 50988668 50989138 + 1.5 NA Intergenic Intergenic -1985 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 226.667-42 chr8 134745657 134745884 + 1.5 NA Intergenic MIRb|SINE|MIR -32739 NR_110323 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 232.833-13 chr14 59277211 59277379 + 1.5 NA intron (NM_001270520, intron 2 of 24) intron (NM_001270520, intron 2 of 24) 13854 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 246-27 chr6 10546010 10546216 + 1.5 NA intron (NM_145649, intron 3 of 4) intron (NM_145649, intron 3 of 4) -9603 NM_001491 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 306-10 chr22 33468308 33468605 + 1.5 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -31787 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 266-4 chr11 13169911 13170193 + 1.5 NA Intergenic Intergenic -106600 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 530.334-3 chr6 36615077 36615716 + 1.5 NA Intergenic Intergenic 7116 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 213-44 chr8 127964286 127964494 + 1.5 NA intron (NR_003367, intron 3 of 8) intron (NR_003367, intron 3 of 8) 3757 NR_031610 100302161 NR_031610 ENSG00000221771 MIR1205 MIRN1205|hsa-mir-1205 microRNA 1205 ncRNA 263.5-30 chr8 137208100 137208456 + 1.5 NA Intergenic Intergenic 205310 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 434.5 chr11 33065584 33066158 + 1.5 NA exon (NM_018393, exon 8 of 10) exon (NM_018393, exon 8 of 10) -10279 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 309.833-4 chr16 28492052 28492370 + 1.5 NA promoter-TSS (NM_001286105) promoter-TSS (NM_001286105) 91 NM_001042432 1201 Hs.534667 NM_000086 ENSG00000188603 CLN3 BTN1|BTS|JNCL CLN3 lysosomal/endosomal transmembrane protein, battenin protein-coding 565-2 chr11 102334869 102335675 + 1.5 NA intron (NM_182962, intron 7 of 9) intron (NM_182962, intron 7 of 9) -11910 NM_001166 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 464.001-2 chr15 65488887 65489358 + 1.5 NA intron (NR_135485, intron 6 of 20) AluSc8|SINE|Alu 28152 NR_135486 54878 Hs.458609 NM_017743 ENSG00000074603 DPP8 DP8|DPRP-1|DPRP1|MST097|MSTP097|MSTP135|MSTP141 dipeptidyl peptidase 8 protein-coding 237.333-10 chr12 26102669 26103039 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 22183 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 448.333-6 chr9 35258994 35259565 + 1.5 NA intron (NM_006377, intron 7 of 38) L2c|LINE|L2 -82617 NM_001371188 241.333-36 chr7 86414878 86415154 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -228893 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 260.5-19 chr5 17132072 17132392 + 1.5 NA intron (NR_027253, intron 2 of 2) intron (NR_027253, intron 2 of 2) 23760 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 168.5-31 chr3 157201847 157202125 + 1.5 NA Intergenic Intergenic -41226 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 256-29 chr8 77601700 77602056 + 1.5 NA Intergenic L1PA5|LINE|L1 151181 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 303.334-5 chr11 121655199 121655573 + 1.5 NA Intergenic Intergenic 203072 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 292-10 chr15 63480748 63481018 + 1.5 NA Intergenic Intergenic -23628 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 302.667-6 chr3 61448896 61449313 + 1.5 NA Intergenic LTR86B1|LTR|ERVL -112467 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 361-8 chr18 53207539 53207975 + 1.5 NA exon (NM_005215, exon 11 of 29) exon (NM_005215, exon 11 of 29) -29344 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 780.5 chr11 29343695 29344474 + 1.5 NA Intergenic MIRb|SINE|MIR -250329 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 285.5-7 chr13 97433176 97433394 + 1.5 NA promoter-TSS (NM_021033) promoter-TSS (NM_021033) -884 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 320-3 chr1 166093138 166093512 + 1.5 NA intron (NR_163271, intron 1 of 2) intron (NR_163271, intron 1 of 2) 61473 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 707.501 chr1 60280897 60281625 + 1.5 NA Intergenic Intergenic -207491 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 296.501-3 chr5 91797006 91797349 + 1.5 NA Intergenic Intergenic -413860 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 274.334-10 chrX 38768048 38768332 + 1.5 NA Intergenic Intergenic -33242 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 344.833 chr1 106361823 106362087 + 1.5 NA Intergenic L1MD2|LINE|L1 -333702 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 192.5-49 chr8 62356650 62356876 + 1.5 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 107909 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 225-35 chr7 20804791 20805076 + 1.5 NA Intergenic Intergenic -18047 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 172-30 chr22 19642503 19642740 + 1.5 NA Intergenic L1ME3G|LINE|L1 -71882 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 465.167-3 chr15 72722054 72722678 + 1.5 NA intron (NM_033028, intron 6 of 15) intron (NM_033028, intron 6 of 15) 36159 NM_033028 585 Hs.208681 NM_033028 ENSG00000140463 BBS4 - Bardet-Biedl syndrome 4 protein-coding 255.834-8 chrX 154712647 154713154 + 1.5 NA intron (NM_001081573, intron 3 of 9) intron (NM_001081573, intron 3 of 9) 38177 NM_001282283 139716 Hs.496982 NM_080612 ENSG00000160219 GAB3 - GRB2 associated binding protein 3 protein-coding 472.334 chr5 75716957 75717684 + 1.5 NA promoter-TSS (NR_149046) promoter-TSS (NR_149046) -112 NR_149046 441087 NM_001013716 LOC441087 - uncharacterized LOC441087 ncRNA 459.333-2 chr15 75029242 75029866 + 1.5 NA intron (NM_001301103, intron 2 of 3) intron (NM_001301103, intron 2 of 3) 5964 NM_001301103 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 399-8 chr18 7988724 7989291 + 1.5 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 378027 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 268-12 chr12 50833936 50834174 + 1.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -8871 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 513.167-4 chr11 31353310 31353911 + 1.5 NA intron (NM_181807, intron 1 of 8) intron (NM_181807, intron 1 of 8) 16129 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 206.5-30 chr19 56671629 56671896 + 1.5 NA promoter-TSS (NM_001005850) promoter-TSS (NM_001005850) -5 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 172.5-6 chr10 57086569 57086765 + 1.5 NA Intergenic Intergenic 217892 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 267.333-13 chr2 176561041 176561418 + 1.5 NA Intergenic Intergenic 39823 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 237.5-9 chr12 51520127 51520331 + 1.5 NA Intergenic Intergenic -71004 NM_001330260 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 549.834 chr12 1605427 1606102 + 1.5 NA Intergenic Intergenic -11183 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 251.5-36 chr9 105243775 105244123 + 1.5 NA promoter-TSS (NM_001286730) promoter-TSS (NM_001286730) -656 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 266.333-9 chr12 11575817 11576134 + 1.5 NA Intergenic Intergenic 27945 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 409.667-6 chr3 178966645 178967134 + 1.5 NA Intergenic Intergenic 104920 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 240.5-14 chr2 134899733 134899982 + 1.5 NA intron (NM_001307983, intron 9 of 9) L1ME4b|LINE|L1 18749 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 209.5-26 chr3 95749127 95749387 + 1.5 NA Intergenic MLT2D|LTR|ERVL -66064 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 280.5-17 chr4 153131938 153132334 + 1.5 NA Intergenic L1MB8|LINE|L1 -20198 NM_001351056 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 211.167-33 chrX 131828034 131828284 + 1.5 NA intron (NR_026975, intron 1 of 12) intron (NR_026975, intron 1 of 12) 2484 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 341.833-7 chrX 83170267 83170733 + 1.5 NA Intergenic L1MA4|LINE|L1 -337790 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 164.667-52 chr7 105081871 105082036 + 1.5 NA intron (NM_182931, intron 13 of 26) intron (NM_182931, intron 13 of 26) 67748 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 347.833-4 chr5 11182887 11183127 + 1.5 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) 405910 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 178.333-29 chr5 78162229 78162494 + 1.5 NA intron (NM_003664, intron 13 of 26) intron (NM_003664, intron 13 of 26) 132337 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 271.5-31 chr4 73661459 73661737 + 1.5 NA Intergenic Intergenic -40967 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 310-15 chr17 71906743 71907213 + 1.5 NA Intergenic Intergenic 119001 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 229.667-26 chr4 122087650 122087861 + 1.5 NA Intergenic 7SLRNA|srpRNA|srpRNA -82848 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 345.5-17 chr6 36361154 36361733 + 1.5 NA intron (NM_001207035, intron 7 of 7) intron (NM_001207035, intron 7 of 7) -24555 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 196.333-8 chr11 111298999 111299184 + 1.5 NA promoter-TSS (NM_001136105) promoter-TSS (NM_001136105) -160 NM_001136105 120376 Hs.31409 NM_001136105 ENSG00000214290 COLCA2 C11orf93|CASC13|LOH11CR1G colorectal cancer associated 2 protein-coding 423-6 chr14 69101244 69101903 + 1.5 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 51026 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 396.333-5 chr3 183184203 183184899 + 1.5 NA intron (NM_015078, intron 27 of 29) intron (NM_015078, intron 27 of 29) -21817 NM_014398 27074 Hs.518448 NM_014398 ENSG00000078081 LAMP3 CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403 lysosomal associated membrane protein 3 protein-coding 218.833-7 chr12 17971729 17971930 + 1.5 NA Intergenic L1MC3|LINE|L1 118364 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 230.167-11 chr2 30367443 30367748 + 1.5 NA Intergenic Intergenic 20949 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 321-4 chr12 27966753 27967156 + 1.5 NA intron (NM_198964, intron 2 of 2) intron (NM_198964, intron 2 of 2) 3022 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 266.667-14 chr3 123510183 123510385 + 1.5 NA intron (NM_001329786, intron 3 of 5) AluSx1|SINE|Alu -61739 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 848.166 chr1 15323314 15324417 + 1.5 NA intron (NM_052929, intron 10 of 30) intron (NM_052929, intron 10 of 30) 20018 NR_148918 101927417 Hs.715313 NR_148918 ENSG00000233485 LOC101927417 - uncharacterized LOC101927417 ncRNA 420.001 chr16 1413646 1414057 + 1.5 NA exon (NM_001193388, exon 2 of 15) exon (NM_001193388, exon 2 of 15) 853 NM_001037125 64718 Hs.643536 NM_001037125 ENSG00000059145 UNKL C16orf28|ZC3H5L|ZC3HDC5L unk like zinc finger protein-coding 274.333-10 chr14 59868448 59868681 + 1.5 NA intron (NM_021136, intron 1 of 8) L1MA7|LINE|L1 2212 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 195.167-32 chr3 118231112 118231302 + 1.5 NA Intergenic Intergenic -410561 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 192.667-26 chr3 178036977 178037232 + 1.5 NA Intergenic L2c|LINE|L2 220239 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 248.833-18 chr4 151520943 151521201 + 1.5 NA intron (NM_001109977, intron 3 of 13) intron (NM_001109977, intron 3 of 13) 111896 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 432.5-7 chr8 130604449 130604838 + 1.5 NA Intergenic Intergenic -160969 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 173-8 chr10 94052293 94052428 + 1.5 NA intron (NM_001288989, intron 2 of 32) intron (NM_001288989, intron 2 of 32) -36666 NM_001165979 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 289.5-11 chr3 168847507 168847878 + 1.5 NA Intergenic Intergenic -54253 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 354.834-4 chr4 38666675 38667387 + 1.5 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -2403 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 272.167-7 chr14 55428648 55429040 + 1.5 NA exon (NM_199047, exon 5 of 7) exon (NM_199047, exon 5 of 7) 11701 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 213.166-5 chr5 8919073 8919449 + 1.5 NA Intergenic Intergenic 79529 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 241-35 chrX 73469509 73469704 + 1.5 NA Intergenic L1P4a|LINE|L1 22352 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 499.334-5 chr8 78806504 78807038 + 1.5 NA Intergenic Intergenic -1248 NM_001199886 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 282.834-7 chr22 26814211 26814572 + 1.5 NA Intergenic Intergenic -45820 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 221.667-35 chr5 10551406 10551703 + 1.5 NA Intergenic Intergenic -12516 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 373.167-7 chr4 92794405 92794742 + 1.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 490174 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 301.667-8 chr16 64683364 64683869 + 1.5 NA Intergenic Intergenic 438447 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 269-28 chr7 74027020 74027249 + 1.5 NA promoter-TSS (NM_001278939) promoter-TSS (NM_001278939) -655 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 262-11 chr16 74998448 74998815 + 1.5 NA promoter-TSS (NM_032268) promoter-TSS (NM_032268) -393 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 328.667-13 chr5 8965329 8965666 + 1.5 NA Intergenic L1MB4|LINE|L1 88398 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 339.667-5 chr11 132231032 132231273 + 1.5 NA intron (NM_016522, intron 3 of 6) intron (NM_016522, intron 3 of 6) -53150 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 253-23 chr3 175335416 175335746 + 1.5 NA intron (NM_207015, intron 5 of 13) intron (NM_207015, intron 5 of 13) -33959 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 557-4 chr6 160533935 160534707 + 1.5 NA intron (NM_005577, intron 37 of 38) intron (NM_005577, intron 37 of 38) -23197 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 364.167-3 chr12 104346800 104347284 + 1.5 NA intron (NM_001093771, intron 16 of 16) AluSx1|SINE|Alu 43303 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 224.167-16 chr18 56827996 56828348 + 1.5 NA intron (NM_015285, intron 20 of 27) intron (NM_015285, intron 20 of 27) 176787 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 344.333-15 chr8 122802141 122802554 + 1.5 NA intron (NM_001362797, intron 1 of 4) AluSz|SINE|Alu 20692 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 336.167 chr12 13683229 13683808 + 1.5 NA intron (NM_000834, intron 3 of 12) MIR|SINE|MIR 296838 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 344-7 chr12 29867831 29868463 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -83388 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 424.5 chr1 1943735 1944459 + 1.5 NA intron (NM_001304360, intron 21 of 38) MLT1D|LTR|ERVL-MaLR -24818 NM_178545 339456 Hs.123423 NM_178545 ENSG00000178821 TMEM52 - transmembrane protein 52 protein-coding 189-58 chrX 49884186 49884374 + 1.5 NA Intergenic L1MC4|LINE|L1 4796 NM_001145073 389856 Hs.143587 NM_001145073 ENSG00000273820 USP27X MRX105|USP22L|USP27 ubiquitin specific peptidase 27 X-linked protein-coding 748.501 chr16 75198939 75200049 + 1.5 NA Intergenic Intergenic 7667 NM_001025200 440387 Hs.610926 NM_001025200 ENSG00000168928 CTRB2 - chymotrypsinogen B2 protein-coding 205 chr10 16051139 16051351 + 1.5 NA Intergenic Intergenic -190712 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 214-24 chr18 38221702 38221901 + 1.5 NA Intergenic Intergenic 564666 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 226.5-26 chr3 143703549 143703923 + 1.5 NA intron (NM_173653, intron 4 of 15) L1MA3|LINE|L1 144732 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 242.167-28 chr8 80899593 80899937 + 1.5 NA Intergenic L1MB5|LINE|L1 -24984 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 282.833-13 chr6 16319884 16320237 + 1.5 NA intron (NM_000332, intron 8 of 8) intron (NM_000332, intron 8 of 8) 81473 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 320-19 chr7 84394398 84394762 + 1.5 NA Intergenic Intergenic -137896 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 426.333-7 chr8 138672833 138673210 + 1.5 NA intron (NM_152888, intron 41 of 64) intron (NM_152888, intron 41 of 64) -175291 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 375.667-3 chr12 43336936 43337575 + 1.5 NA Intergenic Intergenic 181940 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 343.667-4 chr11 12287271 12287770 + 1.5 NA intron (NM_032867, intron 1 of 8) intron (NM_032867, intron 1 of 8) 620 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 248.833-19 chr4 171686992 171687356 + 1.5 NA Intergenic Intergenic -48411 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 257.5-7 chr11 72902503 72902695 + 1.5 NA exon (NM_014824, exon 10 of 20) exon (NM_014824, exon 10 of 20) 88188 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 433.834 chr15 78242325 78242753 + 1.5 NA Intergenic LTR16D|LTR|ERVL -7974 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 366.5-8 chr8 4833631 4834057 + 1.5 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 161070 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 359.333-15 chr8 90359752 90360109 + 1.5 NA intron (NR_051989, intron 3 of 3) intron (NR_051989, intron 3 of 3) 138442 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 187.333-3 chr1 105960072 105960295 + 1.5 NA intron (NR_146609, intron 5 of 5) L1MA6|LINE|L1 68070 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 218.833-28 chr9 126373430 126373586 + 1.5 NA intron (NM_033446, intron 2 of 9) intron (NM_033446, intron 2 of 9) 36996 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-coding repressor of NFAT ncRNA 262.167-4 chr12 109597846 109598134 + 1.5 NA 3' UTR (NM_001114185, exon 11 of 11) 3' UTR (NM_001114185, exon 11 of 11) 24196 NM_000431 4598 Hs.130607 NM_000431 ENSG00000110921 MVK LRBP|MK|MVLK|POROK3 mevalonate kinase protein-coding 383.166 chr2 172134504 172134798 + 1.5 NA Intergenic Intergenic 31645 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 347.667-8 chr2 154877683 154878056 + 1.5 NA Intergenic Intergenic 179174 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 371.5-5 chr17 14160670 14161096 + 1.5 NA intron (NM_001303, intron 5 of 6) intron (NM_001303, intron 5 of 6) 75979 NM_001007530 146822 Hs.447556 NM_001007530 ENSG00000223510 CDRT15 - CMT1A duplicated region transcript 15 protein-coding 179.833-19 chr2 196400434 196400736 + 1.5 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) -38408 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 429.333 chr12 42322536 42323107 + 1.5 NA TTS (NR_107005) TTS (NR_107005) 1038 NR_107005 102467003 NR_107005 ENSG00000278520 MIR7851 hsa-mir-7851 microRNA 7851 ncRNA 248.667-4 chr1 246447208 246447610 + 1.5 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -29997 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 213.167-2 chr1 151475644 151475817 + 1.5 NA Intergenic Charlie13a|DNA|hAT-Charlie -16236 NM_001194937 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 354-17 chr8 23640491 23640891 + 1.5 NA Intergenic L1ME3E|LINE|L1 42198 NM_001256339 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 478.166 chr9 114487350 114487799 + 1.5 NA intron (NM_015404, intron 1 of 11) L1ME3G|LINE|L1 15641 NM_001083885 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 239.833 chr10 123152106 123152447 + 1.5 NA Intergenic Intergenic -1968 NM_001007793 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 250.5-8 chr11 102800424 102800678 + 1.5 NA intron (NR_038390, intron 4 of 7) intron (NR_038390, intron 4 of 7) -2391 NM_002421 4312 Hs.83169 NM_002421 ENSG00000196611 MMP1 CLG|CLGN matrix metallopeptidase 1 protein-coding 341.5-17 chr8 122457864 122458098 + 1.5 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 110663 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 431 chr11 7132218 7132724 + 1.5 NA Intergenic Intergenic 43473 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 301-10 chr2 44390665 44391126 + 1.5 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 28948 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 243.667-36 chr6 123442452 123442675 + 1.5 NA intron (NR_110844, intron 1 of 2) AluYi6|SINE|Alu 2959 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 326-15 chr5 158342188 158342475 + 1.5 NA intron (NR_109888, intron 4 of 6) L1PA15|LINE|L1 67442 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 373-6 chr14 99298629 99299120 + 1.5 NA Intergenic L1M5|LINE|L1 -26677 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 253-15 chr2 169373674 169373989 + 1.5 NA Intergenic Intergenic -11297 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 389.833-4 chr16 46688701 46688971 + 1.5 NA promoter-TSS (NM_014321) promoter-TSS (NM_014321) 342 NM_018206 55737 Hs.454528 NM_018206 ENSG00000069329 VPS35 MEM3|PARK17 VPS35 retromer complex component protein-coding 165-53 chr8 131205851 131206113 + 1.5 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -165073 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 274-23 chr4 95544912 95545134 + 1.5 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 3950 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 368.834-2 chr12 54222473 54223013 + 1.5 NA Intergenic L2b|LINE|L2 8733 NR_039851 100616400 NR_039851 ENSG00000283803 MIR3198-2 mir-3198-2 microRNA 3198-2 ncRNA 330.333-7 chr4 77676921 77677260 + 1.5 NA Intergenic LTR33|LTR|ERVL 141974 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 471 chr11 78048054 78048672 + 1.5 NA intron (NM_001203262, intron 1 of 2) intron (NM_001203262, intron 1 of 2) -2172 NM_001282406 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 171.5-14 chr12 96219888 96220093 + 1.5 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 25615 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 342.167-4 chr12 32755215 32755536 + 1.5 NA exon (NM_001040436, exon 1 of 5) exon (NM_001040436, exon 1 of 5) 522 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 323.667-12 chr15 69806698 69806944 + 1.5 NA Intergenic Intergenic -28413 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 202.333-19 chr2 25606696 25607094 + 1.5 NA intron (NM_001351393, intron 4 of 17) intron (NM_001351393, intron 4 of 17) 43327 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 183.5-23 chr20 21201675 21201890 + 1.5 NA intron (NR_109956, intron 4 of 7) intron (NR_109956, intron 4 of 7) 16507 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 265.5-17 chr3 51002757 51002953 + 1.5 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) 327775 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 323.333-9 chr12 63151808 63152278 + 1.5 NA 5' UTR (NM_000706, exon 1 of 2) 5' UTR (NM_000706, exon 1 of 2) 767 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 198.667-34 chr4 128288048 128288230 + 1.5 NA promoter-TSS (NM_006320) promoter-TSS (NM_006320) -326 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 230.667-30 chr9 12808844 12809023 + 1.5 NA intron (NR_125775, intron 1 of 3) MSTB|LTR|ERVL-MaLR 5456 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 214.5-31 chr7 16564033 16564290 + 1.5 NA intron (NM_001195280, intron 5 of 8) intron (NM_001195280, intron 5 of 8) 37336 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 180.833-24 chr8 129860796 129861057 + 1.5 NA intron (NM_001353282, intron 4 of 10) MER102b|DNA|hAT-Charlie -74302 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 713.333 chr1 40084109 40084838 + 1.5 NA intron (NM_001363695, intron 5 of 7) Tigger1|DNA|TcMar-Tigger 12779 NM_001142604 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 209-14 chr13 61912136 61912334 + 1.5 NA Intergenic MIR|SINE|MIR 117313 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 258.833-14 chr5 65412831 65413239 + 1.5 NA intron (NR_135689, intron 7 of 25) Charlie20a|DNA|hAT-Charlie 68885 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 270-37 chr7 82018361 82018588 + 1.5 NA intron (NM_000722, intron 12 of 38) intron (NM_000722, intron 12 of 38) 9297 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 310.833-11 chr6 137347389 137347734 + 1.5 NA Intergenic Intergenic -128131 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 349.5-8 chr2 219179203 219179603 + 1.5 NA intron (NM_001321109, intron 2 of 8) MIR|SINE|MIR 694 NM_001321110 79137 Hs.516707 NM_024293 ENSG00000144567 RETREG2 C2orf17|FAM134A|MAG-2 reticulophagy regulator family member 2 protein-coding 238.333-37 chr6 142393879 142394300 + 1.5 NA intron (NM_198569, intron 9 of 24) intron (NM_198569, intron 9 of 24) 92082 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 260.5-5 chr11 101891206 101891484 + 1.5 NA exon (NM_178127, exon 9 of 9) exon (NM_178127, exon 9 of 9) -23665 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 394-16 chr8 109756549 109756966 + 1.5 NA Intergenic Intergenic -64966 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 222-21 chr3 82227995 82228189 + 1.5 NA intron (NR_147146, intron 3 of 8) L2|LINE|L2 241950 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 212.667-17 chr18 5338409 5338588 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -41445 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 200.167-2 chr1 66996280 66996436 + 1.5 NA Intergenic Intergenic 57790 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 238.333-39 chr7 37244569 37244895 + 1.5 NA intron (NM_001206480, intron 6 of 21) intron (NM_001206480, intron 6 of 21) 108936 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 329-8 chr4 32692197 32692443 + 1.5 NA Intergenic Intergenic 341282 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 227.5-24 chr3 177352046 177352377 + 1.5 NA Intergenic Intergenic 57769 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 342.166 chr11 31287896 31288217 + 1.5 NA intron (NM_181807, intron 7 of 8) intron (NM_181807, intron 7 of 8) 81683 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 219-18 chr2 81434591 81435066 + 1.5 NA Intergenic MIRb|SINE|MIR 32118 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 188-50 chr7 27399155 27399422 + 1.5 NA Intergenic Intergenic -152059 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 423.167-11 chrX 65583249 65583659 + 1.5 NA Intergenic AluSx1|SINE|Alu -31033 NR_033742 83957 Hs.652967 NR_033742 ENSG00000227942 FRMD8P1 - FERM domain containing 8 pseudogene 1 pseudo 226.333-9 chr18 14121424 14121574 + 1.5 NA intron (NM_145287, intron 2 of 2) intron (NM_145287, intron 2 of 2) 10936 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 233.5-27 chr3 45978399 45978586 + 1.5 NA intron (NM_024513, intron 4 of 17) intron (NM_024513, intron 4 of 17) 17332 NM_024513 79443 Hs.200227 NM_024513 ENSG00000163820 FYCO1 CATC2|CTRCT18|RUFY3|ZFYVE7 FYVE and coiled-coil domain containing 1 protein-coding 312.167-2 chr2 46752486 46752753 + 1.5 NA intron (NM_144949, intron 1 of 1) L1ME3D|LINE|L1 53324 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 259.166 chr11 24245734 24246145 + 1.5 NA Intergenic Intergenic -251114 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 280.5-6 chr12 23067223 23067672 + 1.5 NA Intergenic Intergenic -108189 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 262.5-33 chrX 152941477 152942277 + 1.5 NA intron (NM_001178115, intron 1 of 8) CpG 206 NM_001178115 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 with LIM domain protein-coding 222.833-4 chr1 150073107 150073397 + 1.5 NA intron (NR_103998, intron 3 of 13) intron (NR_103998, intron 3 of 13) 5476 NM_001279354 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 193-24 chr21 35592395 35592760 + 1.5 NA Intergenic MIR|SINE|MIR -11813 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 318.167-6 chr15 43224133 43224518 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -3200 NM_001114134 2038 Hs.368642 NM_000119 ENSG00000166947 EPB42 PA|SPH5 erythrocyte membrane protein band 4.2 protein-coding 271-21 chr4 64425761 64426047 + 1.5 NA Intergenic Intergenic -16444 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 164.667-43 chr5 61611280 61611891 + 1.5 NA Intergenic Intergenic -26175 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 216-35 chr3 171273835 171274014 + 1.5 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) -167165 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 335.833 chr10 27718639 27718941 + 1.5 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -25825 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 304.333-10 chr3 57241931 57242296 + 1.5 NA exon (NM_012096, exon 6 of 22) exon (NM_012096, exon 6 of 22) 14384 NM_012096 26060 Hs.476415 NM_012096 ENSG00000157500 APPL1 APPL|DIP13alpha|MODY14 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 protein-coding 305-9 chr14 42865488 42865915 + 1.5 NA Intergenic Intergenic 1258845 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 253-9 chr12 58210790 58211024 + 1.5 NA Intergenic Intergenic 123015 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 274-38 chr9 16192112 16192309 + 1.5 NA Intergenic Intergenic 60897 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 343.667-8 chr14 35879794 35880206 + 1.5 NA Intergenic Intergenic 53662 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 426.667-2 chr22 35299782 35300244 + 1.5 NA intron (NR_156428, intron 1 of 13) CpG 119 NR_024195 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 237.5-25 chr2 165824946 165825226 + 1.5 NA Intergenic HAL1|LINE|L1 -30839 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 388.333-11 chr6 110624677 110625089 + 1.5 NA intron (NM_001300963, intron 9 of 13) MIRb|SINE|MIR -148270 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 185.667-26 chr2 16845908 16846178 + 1.5 NA Intergenic Intergenic -180209 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 383.833-10 chr5 149852982 149853513 + 1.5 NA 3' UTR (NM_133263, exon 12 of 12) 3' UTR (NM_133263, exon 12 of 12) 79730 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 260.5-13 chr18 5859479 5859749 + 1.5 NA Intergenic L1ME3F|LINE|L1 18919 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 296.333-14 chr5 124662451 124662785 + 1.5 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 82494 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 394.667 chr1 84345985 84346340 + 1.5 NA intron (NM_001134663, intron 3 of 3) MIRb|SINE|MIR 38639 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 232.333-18 chr4 68164717 68164936 + 1.5 NA Intergenic L1MC3|LINE|L1 -17466 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 285.167-21 chrX 136268216 136268526 + 1.5 NA Intergenic MIR3|SINE|MIR -11889 NM_001173516 79649 Hs.446275 NM_024597 ENSG00000129680 MAP7D3 MDP3 MAP7 domain containing 3 protein-coding 360.834-4 chr19 12829464 12829830 + 1.5 NA intron (NM_001080997, intron 2 of 5) MIR|SINE|MIR 769 NM_001080997 83546 Hs.21162 NM_031429 ENSG00000132026 RTBDN - retbindin protein-coding 242.167-30 chr8 116844925 116845400 + 1.5 NA TTS (NM_006265) TTS (NM_006265) -29262 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 304.5-19 chr6 120826062 120826383 + 1.5 NA Intergenic HAL1b|LINE|L1 508258 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 289.5-9 chr3 137516327 137516743 + 1.5 NA Intergenic MIRc|SINE|MIR -247780 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 189-26 chr2 7849075 7849312 + 1.5 NA Intergenic Intergenic 50462 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 345.5-13 chr3 114107252 114107721 + 1.5 NA Intergenic L1M5|LINE|L1 50749 NM_001256835 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 242.5-7 chr10 90883254 90883470 + 1.5 NA intron (NM_006413, intron 5 of 10) Tigger14a|DNA|TcMar-Tigger 11388 NM_001104546 10556 Hs.139120 NM_006413 ENSG00000148688 RPP30 TSG15 ribonuclease P/MRP subunit p30 protein-coding 576.167-3 chr21 30012044 30012812 + 1.5 NA Intergenic Intergenic -72376 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 359.001-5 chr7 118946118 118946548 + 1.5 NA Intergenic L1MC3|LINE|L1 721629 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 265.333-21 chr8 46667846 46668069 + 1.5 NA Intergenic AluSx|SINE|Alu -50314 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 211.5-21 chr17 10614729 10614969 + 1.5 NA intron (NR_125367, intron 10 of 10) intron (NR_125367, intron 10 of 10) 42460 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 171-11 chr11 106061844 106062153 + 1.5 NA intron (NM_152433, intron 1 of 2) MER3|DNA|hAT-Charlie 15349 NM_198439 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 274-12 chr14 79542425 79542665 + 1.5 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 263165 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 293.5-6 chr12 39438525 39438852 + 1.5 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 4432 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 327.5-23 chr8 134750217 134750579 + 1.5 NA Intergenic L1ME3A|LINE|L1 -37367 NR_110323 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 293.167-10 chr3 165270581 165270890 + 1.5 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 63775 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 289.334-11 chr8 114110453 114110788 + 1.5 NA Intergenic L1PA13|LINE|L1 -673681 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 380.333-7 chr3 158532336 158532690 + 1.5 NA intron (NM_001271838, intron 7 of 9) intron (NM_001271838, intron 7 of 9) 5805 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 330.5-15 chr8 135807985 135808255 + 1.5 NA Intergenic MIRb|SINE|MIR 350664 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 215.167-29 chr6 42640015 42640345 + 1.5 NA intron (NM_015255, intron 15 of 46) intron (NM_015255, intron 15 of 46) 76151 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 198.667-26 chr2 152673130 152673301 + 1.5 NA intron (NM_001365601, intron 10 of 24) intron (NM_001365601, intron 10 of 24) 44246 NM_001365599 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 288.167-12 chr17 44898997 44899385 + 1.5 NA promoter-TSS (NM_001258399) promoter-TSS (NM_001258399) 177 NM_001258353 9343 Hs.151787 NM_004247 ENSG00000108883 EFTUD2 MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD elongation factor Tu GTP binding domain containing 2 protein-coding 377.167 chr1 47997533 47998230 + 1.5 NA promoter-TSS (NM_001194986) promoter-TSS (NM_001194986) -496 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 209.667-33 chr4 113953781 113954017 + 1.5 NA intron (NM_001354211, intron 4 of 6) Kanga2_a|DNA|TcMar-Tc2 25748 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 285.833 chr1 23361962 23362212 + 1.5 NA exon (NM_001077195, exon 4 of 4) exon (NM_001077195, exon 4 of 4) 6299 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 246-32 chr7 77939817 77940050 + 1.5 NA intron (NM_001366085, intron 10 of 10) intron (NM_001366085, intron 10 of 10) 99803 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 170.167-34 chr4 140646400 140646618 + 1.5 NA intron (NM_015130, intron 13 of 20) intron (NM_015130, intron 13 of 20) -3429 NR_077215 644962 Hs.676500 NR_077215 TNRC18P1 - trinucleotide repeat containing 18 pseudogene 1 pseudo 301.666-6 chr11 47798986 47799355 + 1.5 NA intron (NM_015231, intron 23 of 35) AluSx|SINE|Alu -31829 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 184.833-16 chr2 29678902 29679144 + 1.5 NA intron (NM_004304, intron 3 of 28) L1M4a2|LINE|L1 -203646 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 282-9 chr12 1666265 1666510 + 1.5 NA Intergenic L1M5|LINE|L1 -6007 NR_037422 100500816 NR_037422 ENSG00000266043 MIR3649 - microRNA 3649 ncRNA 655.667 chr5 132293099 132294015 + 1.5 NA promoter-TSS (NM_003059) promoter-TSS (NM_003059) -837 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 197-42 chr9 79933643 79933832 + 1.5 NA intron (NR_121213, intron 1 of 2) (AT)n|Simple_repeat|Simple_repeat -41286 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 210-44 chr8 108301472 108301783 + 1.5 NA Intergenic Intergenic -52910 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 263.5-23 chr5 39165488 39165712 + 1.5 NA intron (NM_001243093, intron 2 of 18) L1PB4|LINE|L1 53963 NM_001349333 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 286-6 chr16 1363317 1363578 + 1.5 NA non-coding (NR_160278, exon 16 of 16) non-coding (NR_160278, exon 16 of 16) 11516 NM_032520 84572 Hs.241575 NM_032520 ENSG00000090581 GNPTG C16orf27|GNPTAG|LP2537|RJD9 N-acetylglucosamine-1-phosphate transferase subunit gamma protein-coding 233.5-7 chr11 103069573 103069833 + 1.5 NA intron (NM_001318740, intron 3 of 6) L1MDa|LINE|L1 22457 NM_001318740 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 278.167-20 chr5 4234149 4234418 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -539198 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 464.5-7 chr21 45138378 45138956 + 1.5 NA intron (NR_027673, intron 3 of 12) intron (NR_027673, intron 3 of 12) -13863 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 350.333-3 chr13 45623283 45623709 + 1.5 NA Intergenic MamRep1879|DNA|hAT-Tip100? -7757 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 394.834-3 chr7 72071803 72072222 + 1.5 NA intron (NM_001363460, intron 3 of 5) L1M4c|LINE|L1 265379 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 217.167-18 chr4 36141213 36141419 + 1.5 NA intron (NR_146894, intron 19 of 32) intron (NR_146894, intron 19 of 32) 102623 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 260.167-13 chr17 54170638 54171002 + 1.5 NA Intergenic Intergenic 347893 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 297.333-19 chr7 38319039 38319455 + 1.5 NA Intergenic Intergenic -22330 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 195.167-21 chr18 7198778 7198932 + 1.5 NA Intergenic Intergenic -32249 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 704.334 chr11 92885938 92886734 + 1.5 NA intron (NM_001008781, intron 23 of 24) (GT)n|Simple_repeat|Simple_repeat 29292 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 321.333-15 chr7 92804409 92804754 + 1.5 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 29378 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 223.833-7 chr15 59526188 59526418 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie -85480 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 285.167-8 chr19 19186059 19186323 + 1.5 NA intron (NR_027308, intron 2 of 11) intron (NR_027308, intron 2 of 11) 5961 NR_027308 4207 Hs.153629 NM_005919 ENSG00000064489 BORCS8-MEF2B LOC729991-MEF2B|MEF2B|MEF2BNB-MEF2B|RSRFR2 BORCS8-MEF2B readthrough protein-coding 632.333-3 chr22 25050886 25051852 + 1.5 NA intron (NM_001145206, intron 4 of 10) MIRc|SINE|MIR 23395 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 311.5-7 chr17 72126575 72126803 + 1.5 NA TTS (NM_000346) TTS (NM_000346) 5669 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 510.667-5 chr5 147568119 147568824 + 1.5 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 8477 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 311-3 chr12 68095319 68095776 + 1.5 NA Intergenic MIRc|SINE|MIR 64193 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 296.5-2 chr1 165412621 165412839 + 1.5 NA intron (NM_001256570, intron 5 of 10) intron (NM_001256570, intron 5 of 10) 12254 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 341.5-8 chr13 45163175 45163449 + 1.5 NA intron (NM_004128, intron 4 of 7) intron (NM_004128, intron 4 of 7) 37733 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 463.667-3 chr1 212368145 212368612 + 1.5 NA intron (NM_001198862, intron 8 of 8) L1MA4|LINE|L1 15560 NR_004389 692157 Hs.707958 NR_004389 ENSG00000201544 SNORA16B U98b small nucleolar RNA, H/ACA box 16B snoRNA 280.167-6 chr2 26566608 26566902 + 1.5 NA intron (NM_001105519, intron 1 of 3) AluJr|SINE|Alu 4168 NM_001105519 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 184-26 chr18 21959661 21959842 + 1.5 NA Intergenic Intergenic -128345 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 335.167-8 chr22 21734224 21734517 + 1.5 NA intron (NM_013313, intron 1 of 4) L1MC3|LINE|L1 1424 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 177.667-39 chr7 3766647 3766920 + 1.5 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -362902 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 462.834-2 chr19 51421630 51422112 + 1.5 NA Intergenic CpG -4229 NM_001171157 89790 Hs.284813 NM_033130 ENSG00000142512 SIGLEC10 PRO940|SIGLEC-10|SLG2 sialic acid binding Ig like lectin 10 protein-coding 315.333-17 chr4 20873190 20873614 + 1.5 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 9308 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 264.833 chr1 91632066 91632366 + 1.5 NA Intergenic L2a|LINE|L2 131108 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 356.667-3 chr12 28282793 28283163 + 1.5 NA intron (NM_001352082, intron 4 of 13) L1PB3|LINE|L1 -92240 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 528.5-4 chr18 68546069 68546693 + 1.5 NA Intergenic L1M1|LINE|L1 168727 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 475.833-3 chr15 92077472 92078165 + 1.5 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 223514 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 616.5-3 chr17 13024259 13024918 + 1.5 NA Intergenic Intergenic -6524 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 336.5-4 chr10 78256176 78256670 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie 7798 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 292.5 chr1 160726178 160726529 + 1.5 NA Intergenic Intergenic -12704 NM_001282594 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 378.666-3 chr10 34543645 34543962 + 1.5 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 271493 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 206.167-21 chr7 131843633 131843889 + 1.5 NA Intergenic Intergenic -66459 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 179.5-48 chr8 66810055 66810309 + 1.5 NA intron (NM_001204173, intron 6 of 18) intron (NM_001204173, intron 6 of 18) 34977 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 329.167-12 chr6 16677490 16677865 + 1.5 NA intron (NM_000332, intron 3 of 8) intron (NM_000332, intron 3 of 8) 82507 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 473.001 chr14 42884028 42884447 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR 1277381 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 294.5-4 chr1 183844613 183844953 + 1.5 NA intron (NM_001297671, intron 2 of 17) intron (NM_001297671, intron 2 of 17) 39663 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 184.5-55 chr9 100322383 100322591 + 1.5 NA intron (NM_001161584, intron 9 of 14) intron (NM_001161584, intron 9 of 14) 30084 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 490.001-3 chr20 32893946 32894367 + 1.5 NA intron (NM_001143967, intron 9 of 26) intron (NM_001143967, intron 9 of 26) 35233 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 193.667-14 chr11 131935696 131936081 + 1.5 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) 25070 NR_147851 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 218-38 chr7 16697690 16697979 + 1.5 NA intron (NM_001362717, intron 9 of 11) intron (NM_001362717, intron 9 of 11) 36620 NM_001362717 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 262.5-6 chr11 116948986 116949266 + 1.5 NA intron (NM_001366687, intron 3 of 4) L1M4|LINE|L1 -111176 NM_001318021 335 Hs.93194 NM_000039 ENSG00000118137 APOA1 apo(a) apolipoprotein A1 protein-coding 198.334-6 chr5 41927570 41927750 + 1.5 NA intron (NM_012176, intron 2 of 6) intron (NM_012176, intron 2 of 6) 2379 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 317.167-10 chr8 41421319 41421820 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie -5086 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 401-2 chr16 2268128 2268413 + 1.5 NA promoter-TSS (NM_080594) promoter-TSS (NM_080594) -144 NM_001286627 10921 Hs.355643 NM_006711 ENSG00000205937 RNPS1 E5.1 RNA binding protein with serine rich domain 1 protein-coding 290.833-4 chr14 86379361 86379809 + 1.5 NA Intergenic L2c|LINE|L2 444907 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 253-26 chr4 61710245 61710418 + 1.5 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 451434 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 199-56 chr8 133533820 133533982 + 1.5 NA intron (NM_003033, intron 2 of 8) L1ME4c|LINE|L1 37986 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 182-35 chr5 32232578 32232771 + 1.5 NA intron (NM_001294344, intron 13 of 13) intron (NM_001294344, intron 13 of 13) -58355 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 363.667-3 chr13 71477535 71478303 + 1.5 NA intron (NM_080759, intron 8 of 10) intron (NM_080759, intron 8 of 10) 389273 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 198.333-30 chr20 59040832 59040971 + 1.5 NA intron (NM_001256403, intron 1 of 4) intron (NM_001256403, intron 1 of 4) 1885 NM_016045 51012 Hs.656865 NM_016045 ENSG00000101166 PRELID3B C20orf45|SLMO2|dJ543J19.5 PRELI domain containing 3B protein-coding 246.667-18 chr5 58880774 58880967 + 1.5 NA Intergenic L2b|LINE|L2 119028 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 273.667-14 chr4 81328829 81329306 + 1.5 NA Intergenic L1MB7|LINE|L1 -113845 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 247.667-23 chr20 52251532 52251819 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -59690 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 416.333-5 chr5 38292506 38292954 + 1.5 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -1744 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 197.167-29 chr4 119226558 119226724 + 1.5 NA intron (NM_001371399, intron 2 of 16) L1ME1|LINE|L1 13928 NM_001371395 256.5-16 chr2 120143691 120144197 + 1.5 NA intron (NM_001330310, intron 19 of 24) MIR|SINE|MIR 79456 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 280.666-4 chr5 142024732 142025165 + 1.5 NA Intergenic Intergenic -11921 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 268.5-20 chr3 11569079 11569397 + 1.5 NA promoter-TSS (NM_001128221) promoter-TSS (NM_001128221) -440 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 217.5-27 chr8 130496550 130496839 + 1.5 NA Intergenic (TAATATA)n|Simple_repeat|Simple_repeat -53020 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 357.833-6 chr3 84351347 84351686 + 1.5 NA Intergenic Intergenic 518059 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 202.5-5 chr1 228110256 228110526 + 1.5 NA Intergenic Intergenic -1079 NM_181454 128308 Hs.63236 NM_181441 ENSG00000162910 MRPL55 AAVG5835|L55nt|MRP-L55|PRO19675 mitochondrial ribosomal protein L55 protein-coding 386-12 chr8 67339138 67339477 + 1.5 NA intron (NM_006421, intron 1 of 38) intron (NM_006421, intron 1 of 38) 4474 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 224.5-43 chr9 29575463 29575743 + 1.5 NA Intergenic Intergenic -362002 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 270.501 chr6 55172118 55172336 + 1.5 NA intron (NM_001526, intron 1 of 7) L2a|LINE|L2 65767 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 219.667-18 chr2 63092997 63093285 + 1.5 NA Intergenic Intergenic 26401 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 255-38 chr8 78731490 78731867 + 1.5 NA Intergenic Intergenic -7304 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 220.833-24 chr8 3940137 3940409 + 1.5 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1054641 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 221.667-5 chr10 12707650 12708253 + 1.5 NA intron (NM_001351032, intron 5 of 11) MIRb|SINE|MIR 17402 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 317.5-11 chr20 38887100 38887354 + 1.5 NA intron (NM_015568, intron 2 of 10) L2c|LINE|L2 -39190 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 257-35 chr9 132303397 132303608 + 1.5 NA intron (NM_001351527, intron 11 of 25) L1M4|LINE|L1 51354 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 423.167-5 chr11 92941918 92942430 + 1.5 NA Intergenic Intergenic -26546 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 296.833-2 chr10 52170071 52170305 + 1.5 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 143940 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 404.167-9 chr5 61933957 61934341 + 1.5 NA Intergenic Intergenic -198451 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 720.999 chr10 55091271 55092318 + 1.5 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -290503 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 349.5-3 chr14 49860797 49861345 + 1.5 NA Intergenic Intergenic 1778 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 291.667-18 chr8 138013270 138013493 + 1.5 NA intron (NR_161374, intron 2 of 7) L2a|LINE|L2 70164 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 315.833 chr1 145853070 145853430 + 1.5 NA intron (NM_006099, intron 9 of 13) AluSx1|SINE|Alu -2605 NR_106794 102466191 NR_106794 ENSG00000278549 MIR6736 hsa-mir-6736 microRNA 6736 ncRNA 276-25 chr7 28102800 28103177 + 1.5 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -77469 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 249.167-19 chr21 31013021 31013381 + 1.5 NA Intergenic Intergenic 25275 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 208-39 chr8 20184768 20185187 + 1.5 NA Intergenic Intergenic -1771 NM_001142325 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 181.167-14 chr14 55408025 55408261 + 1.5 NA intron (NM_014924, intron 1 of 9) MIRb|SINE|MIR 3715 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 188.333-19 chr17 73206169 73206373 + 1.5 NA intron (NM_018714, intron 11 of 13) intron (NM_018714, intron 11 of 13) 13216 NM_018714 9382 Hs.103555 NM_018714 ENSG00000166685 COG1 CDG2G|LDLB component of oligomeric golgi complex 1 protein-coding 242.5-14 chr13 94660819 94661117 + 1.5 NA Intergenic Intergenic 47518 NR_120417 101927248 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 178.833-21 chr2 219388449 219388626 + 1.5 NA promoter-TSS (NR_134970) promoter-TSS (NR_134970) 339 NM_001319121 23549 Hs.258551 NM_012100 ENSG00000123992 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 246.5-19 chr18 40751295 40751554 + 1.5 NA Intergenic Intergenic 685138 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 267.833-5 chr17 63309517 63309695 + 1.5 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 130661 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 579.333-3 chr11 64269368 64270051 + 1.5 NA TTS (NM_000932) TTS (NM_000932) -14630 NM_001170726 56834 Hs.523763 NM_020155 ENSG00000173264 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding 270.5-8 chr12 13247424 13247790 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL 50881 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 439.834-2 chr1 173203908 173204366 + 1.5 NA intron (NM_003326, intron 1 of 2) intron (NM_003326, intron 1 of 2) 1395 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 262.333-21 chr7 88923745 88923946 + 1.5 NA intron (NM_181646, intron 1 of 3) L1ME3G|LINE|L1 -128108 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 333.5-18 chr5 36241895 36242238 + 1.5 NA promoter-TSS (NM_001287340) promoter-TSS (NM_001287340) -141 NM_001085411 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 241.833-4 chr17 78353243 78353416 + 1.5 NA Intergenic CpG 6750 NM_003955 9021 Hs.527973 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 358.833-12 chr6 165181274 165181720 + 1.5 NA Intergenic Intergenic 128108 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 230-36 chr6 92798177 92798478 + 1.5 NA Intergenic L1M4c|LINE|L1 621232 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 224.5-4 chr11 24041428 24041635 + 1.5 NA Intergenic Intergenic -455522 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 361.5-3 chr10 106796563 106796939 + 1.5 NA intron (NM_001206569, intron 3 of 25) intron (NM_001206569, intron 3 of 25) 367955 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 237.333-25 chr22 34992798 34993029 + 1.5 NA intron (NR_138042, intron 1 of 4) MER117|DNA|hAT-Charlie 5003 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 462.833-2 chr15 65638512 65639139 + 1.5 NA intron (NM_004727, intron 3 of 9) G-rich|Low_complexity|Low_complexity -4054 NM_001254740 9187 Hs.173092 NM_004727 ENSG00000074621 SLC24A1 CSNB1D|HsT17412|NCKX|NCKX1|RODX solute carrier family 24 member 1 protein-coding 474.333-2 chr20 57718529 57719169 + 1.5 NA Intergenic MIRc|SINE|MIR -7313 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 170-57 chrX 107103110 107103287 + 1.5 NA intron (NM_018301, intron 4 of 6) MLT1C|LTR|ERVL-MaLR 15387 NR_136732 55285 Hs.139053 NM_018301 ENSG00000089682 RBM41 - RNA binding motif protein 41 protein-coding 305.667-15 chr5 157731376 157731696 + 1.5 NA promoter-TSS (NM_001317826) promoter-TSS (NM_001317826) 116 NM_017872 54974 Hs.353090 NM_017872 ENSG00000113272 THG1L ICF45|IHG-1|hTHG1 tRNA-histidine guanylyltransferase 1 like protein-coding 392.167-3 chr6 49636581 49636887 + 1.5 NA exon (NM_000324, exon 1 of 10) exon (NM_000324, exon 1 of 10) 140 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 242.5-15 chr14 23927657 23928112 + 1.5 NA Intergenic Intergenic -25886 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 191.167-24 chr6 21843667 21843911 + 1.5 NA intron (NR_015410, intron 4 of 11) intron (NR_015410, intron 4 of 11) 177376 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 621.167-3 chr20 56974319 56974857 + 1.5 NA Intergenic Intergenic -239108 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 290.333-23 chr8 125435994 125436307 + 1.5 NA exon (NM_001282985, exon 3 of 3) exon (NM_001282985, exon 3 of 3) 3941 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 250.5-3 chr10 66275819 66276027 + 1.5 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) -650113 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 283-26 chr8 65536231 65536458 + 1.5 NA intron (NR_033893, intron 1 of 4) AluSx1|SINE|Alu 26322 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 398.333-4 chr11 28083650 28084094 + 1.5 NA intron (NM_031217, intron 7 of 16) intron (NM_031217, intron 7 of 16) 24284 NM_031217 81930 Hs.301052 NM_031217 ENSG00000121621 KIF18A MS-KIF18A|PPP1R99 kinesin family member 18A protein-coding 180.333-54 chr8 115239330 115239554 + 1.5 NA Intergenic Intergenic 428571 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 383-13 chr8 135240800 135241157 + 1.5 NA intron (NR_120396, intron 1 of 4) (CTCCTT)n|Simple_repeat|Simple_repeat 6847 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 351.166-2 chr5 168748239 168748856 + 1.5 NA intron (NM_003062, intron 19 of 35) intron (NM_003062, intron 19 of 35) 19708 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 266.833-16 chr3 197122682 197123079 + 1.5 NA intron (NM_001366216, intron 10 of 23) L1M5|LINE|L1 60992 NR_158766 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 312.667-23 chr7 158093811 158094169 + 1.5 NA intron (NM_130843, intron 9 of 21) intron (NM_130843, intron 9 of 21) 239405 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 249.5-22 chr6 40964868 40965231 + 1.5 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 58231 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 325.5-2 chr11 19937860 19938103 + 1.5 NA intron (NM_182964, intron 7 of 37) L2c|LINE|L2 -84575 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 184-23 chr17 64508121 64508323 + 1.5 NA intron (NM_138363, intron 1 of 19) intron (NM_138363, intron 1 of 19) 1245 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 273.333-19 chr7 53083267 53083628 + 1.5 NA Intergenic Intergenic 47814 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 270-4 chr1 246547623 246547862 + 1.5 NA intron (NM_022366, intron 6 of 7) intron (NM_022366, intron 6 of 7) 18519 NM_022366 64216 Hs.7395 NM_022366 ENSG00000162851 TFB2M Hkp1|mtTFB2 transcription factor B2, mitochondrial protein-coding 470.5-5 chr19 5377644 5378270 + 1.5 NA Intergenic MIR3|SINE|MIR -37145 NM_130855 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase receptor type S protein-coding 197.333-6 chr12 16361000 16361185 + 1.5 NA intron (NM_001260512, intron 4 of 4) intron (NM_001260512, intron 4 of 4) 7675 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 188.833-14 chr18 63029370 63029498 + 1.5 NA Intergenic MamRep1151|LTR?|LTR? 289946 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 438.167 chr14 23379920 23380373 + 1.5 NA TTS (NM_001037288) TTS (NM_001037288) 3100 NM_001288744 116173 Hs.99272 NM_138460 ENSG00000166091 CMTM5 CKLFSF5 CKLF like MARVEL transmembrane domain containing 5 protein-coding 274.667-28 chr8 140171443 140171732 + 1.5 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -71052 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 369-2 chr1 188550656 188551004 + 1.5 NA Intergenic Intergenic 1107202 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 298.334-2 chr1 176655903 176656545 + 1.5 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 193049 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 170-2 chr10 24360956 24361129 + 1.5 NA intron (NM_019590, intron 2 of 20) L1ME4a|LINE|L1 85357 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 398.833-10 chr3 194969512 194969788 + 1.5 NA Intergenic L1ME4c|LINE|L1 -124938 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 337.667-8 chr18 41338803 41339222 + 1.5 NA Intergenic Intergenic 181665 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 267.5-8 chr12 132220107 132220494 + 1.5 NA intron (NM_001122636, intron 6 of 10) L1MEi|LINE|L1 -14272 NM_021808 50614 Hs.301062 NM_021808 ENSG00000182870 GALNT9 GALNAC-T9|GALNACT9 polypeptide N-acetylgalactosaminyltransferase 9 protein-coding 198.167-3 chr1 159507116 159507357 + 1.5 NA Intergenic MamGypLTR1c|LTR|Gypsy 28771 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 163.333-49 chr5 125717390 125717575 + 1.5 NA Intergenic LTR33|LTR|ERVL 224221 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 257-20 chr21 26636024 26636331 + 1.5 NA Intergenic Intergenic -62891 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 275.167 chr1 169427467 169427761 + 1.5 NA promoter-TSS (NM_021179) promoter-TSS (NM_021179) -140 NM_021179 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 362.667-8 chr6 35318602 35318881 + 1.5 NA intron (NM_022047, intron 7 of 10) intron (NM_022047, intron 7 of 10) 20923 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6 guanine nucleotide exchange factor protein-coding 249.5-12 chr3 118108609 118108930 + 1.5 NA Intergenic Intergenic -417844 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 198.167-2 chr1 114884156 114884372 + 1.5 NA intron (NM_001282542, intron 12 of 30) L2c|LINE|L2 29401 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 625.667-2 chr18 21897017 21897944 + 1.5 NA Intergenic MIRb|SINE|MIR -66074 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 399.667-9 chr8 56829568 56830012 + 1.5 NA Intergenic L1MC1|LINE|L1 164077 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 230-8 chr10 112242313 112242684 + 1.5 NA Intergenic L1MA3|LINE|L1 -40902 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 173.667-38 chr4 106265985 106266402 + 1.5 NA intron (NM_001290768, intron 3 of 26) intron (NM_001290768, intron 3 of 26) -49417 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 171.5-47 chr8 107553756 107553970 + 1.5 NA Intergenic Intergenic -55945 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 434-3 chr11 33688098 33688581 + 1.5 NA Intergenic Intergenic 12401 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 260.667-4 chr1 81966457 81966660 + 1.5 NA exon (NM_001350699, exon 11 of 21) exon (NM_001350699, exon 11 of 21) 164105 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 291-12 chr14 87396828 87397147 + 1.5 NA Intergenic LTR37B|LTR|ERV1 258307 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 186.167-10 chr17 72716221 72716383 + 1.5 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -75830 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 251.333-12 chr15 76933494 76933814 + 1.5 NA intron (NM_001271837, intron 2 of 7) MIR3|SINE|MIR 1905 NM_001271837 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 326.5-16 chr6 75670401 75670742 + 1.5 NA exon (NM_001304792, exon 10 of 15) exon (NM_001304792, exon 10 of 15) 68691 NM_015571 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 309.5-11 chr3 34911607 34912027 + 1.5 NA intron (NR_110817, intron 2 of 3) ERVL-B4-int|LTR|ERVL 482206 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 238-25 chr4 150497072 150497255 + 1.5 NA intron (NM_001367550, intron 40 of 56) intron (NM_001367550, intron 40 of 56) -81926 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 266.5-23 chr6 127643337 127643616 + 1.5 NA Intergenic L1MA4|LINE|L1 66302 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 219.667-9 chr16 73565055 73565487 + 1.5 NA Intergenic Intergenic 178466 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 349.5-9 chr21 31333443 31333973 + 1.5 NA intron (NM_001353686, intron 2 of 27) AluJb|SINE|Alu 10646 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 335.333-3 chr16 84339451 84339798 + 1.5 NA Intergenic Intergenic -28899 NM_014861 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 175.833-39 chr7 49170878 49171170 + 1.5 NA Intergenic LOR1b|LTR|ERV1 246477 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 264.333-5 chr10 125881366 125881564 + 1.5 NA promoter-TSS (NM_018180) promoter-TSS (NM_018180) -173 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 302.5-17 chr8 37700237 37700735 + 1.5 NA TTS (NM_025069) TTS (NM_025069) 4704 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 201.667 chr1 40875867 40876008 + 1.5 NA Intergenic Intergenic -13574 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 315-19 chr7 110252308 110252527 + 1.5 NA Intergenic Intergenic -292204 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 645.332 chr11 41201077 41201741 + 1.5 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 258227 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 308.5-19 chr4 172850530 172850965 + 1.5 NA intron (NM_001034845, intron 7 of 12) MER21C|LTR|ERVL -123869 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 226.166-5 chr3 185676874 185677104 + 1.5 NA intron (NR_138486, intron 7 of 15) (TA)n|Simple_repeat|Simple_repeat -36263 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 282.5-15 chr6 163554509 163554944 + 1.5 NA intron (NM_206853, intron 4 of 6) L2|LINE|L2 116758 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 311.5-10 chr21 25323499 25323927 + 1.5 NA Intergenic L1MEa|LINE|L1 107988 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 406-6 chr21 23593697 23594261 + 1.5 NA Intergenic L1MC1|LINE|L1 -209144 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 400-11 chr8 80874489 80874984 + 1.5 NA promoter-TSS (NM_001367783) promoter-TSS (NM_001367783) 45 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 299.667-9 chr4 115369262 115369633 + 1.5 NA Intergenic Intergenic -255827 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 424.5-14 chr8 77208507 77208924 + 1.5 NA Intergenic Intergenic -207671 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 185-26 chr18 40874088 40874251 + 1.5 NA Intergenic Intergenic 646508 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 564.833-3 chr10 112565106 112565870 + 1.5 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -68682 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 346.833-6 chr3 75192197 75192727 + 1.5 NA Intergenic LTR41|LTR|ERVL -22014 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 388.167-3 chr16 83137534 83137911 + 1.5 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -147424 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 294.5-26 chr7 143235848 143236230 + 1.5 NA intron (NM_001130026, intron 8 of 10) L1MA5|LINE|L1 14002 NM_176882 259286 Hs.352241 NM_176882 ENSG00000221937 TAS2R40 GPR60|T2R40|T2R58 taste 2 receptor member 40 protein-coding 200.667-57 chr9 98085707 98085986 + 1.5 NA 3' UTR (NM_014788, exon 6 of 6) 3' UTR (NM_014788, exon 6 of 6) 29114 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 334.667-9 chr2 112088448 112088830 + 1.5 NA intron (NM_001329914, intron 9 of 18) intron (NM_001329914, intron 9 of 18) 33370 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 178-19 chr2 9331887 9332049 + 1.5 NA intron (NM_003887, intron 7 of 27) intron (NM_003887, intron 7 of 27) 90623 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 303.334-15 chr6 52164106 52164435 + 1.5 NA Intergenic Intergenic -13247 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 181.5-55 chr9 28369464 28369885 + 1.5 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 349631 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 675.333 chr19 46346752 46347568 + 1.5 NA promoter-TSS (NM_006247) promoter-TSS (NM_006247) 73 NM_006247 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 345.667-8 chr5 43193491 43193837 + 1.5 NA intron (NR_072980, intron 1 of 3) intron (NR_072980, intron 1 of 3) 812 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 345.833-10 chr21 24218525 24218755 + 1.5 NA Intergenic Intergenic 102737 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 441.833-2 chr10 95958486 95959018 + 1.5 NA intron (NM_001349008, intron 11 of 34) L1M4c|LINE|L1 -41339 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 286.5-10 chr21 30203062 30203450 + 1.5 NA Intergenic Intergenic 8527 NR_038855 266919 Hs.561028 NR_038855 ENSG00000227342 LINC00307 D21S2091E|NCRNA00307 long intergenic non-protein coding RNA 307 ncRNA 175-4 chr1 162109261 162109389 + 1.5 NA intron (NM_014697, intron 1 of 9) L1MC5|LINE|L1 39634 NM_001164757 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 344.667-11 chr4 13072511 13072778 + 1.5 NA Intergenic Intergenic 411696 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 244.833-2 chr12 22407294 22407719 + 1.5 NA Intergenic Intergenic -72792 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 206.833-12 chr22 23265669 23265917 + 1.5 NA TTS (NR_033408) TTS (NR_033408) 3026 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 253.833-9 chr3 177360146 177360514 + 1.5 NA Intergenic Intergenic 65888 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 326.5-15 chr6 47922153 47922703 + 1.5 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 135360 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 226-11 chr12 1893919 1894232 + 1.5 NA intron (NM_172364, intron 6 of 37).2 L1MA4A|LINE|L1 24577 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 231.5-24 chr22 24923260 24923585 + 1.5 NA intron (NM_001098498, intron 23 of 23) intron (NM_001098498, intron 23 of 23) 23273 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 235.5-9 chr18 50044141 50044476 + 1.5 NA intron (NM_001080467, intron 2 of 39) intron (NM_001080467, intron 2 of 39) 82255 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 247.5-28 chr20 39111985 39112532 + 1.5 NA Intergenic Intergenic 112490 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 468.499 chr12 15410031 15410499 + 1.5 NA intron (NM_030667, intron 1 of 26) MLT2B1|LTR|ERVL 87757 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 312-17 chr3 76368952 76369440 + 1.5 NA Intergenic L2c|LINE|L2 -583647 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 505.667-5 chr8 59920070 59920992 + 1.5 NA Intergenic Intergenic 360869 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 228-2 chr1 54121476 54121725 + 1.5 NA Intergenic Intergenic 31581 NM_201546 200008 NM_201546 ENSG00000157211 CDCP2 - CUB domain containing protein 2 protein-coding 300-13 chr3 99729192 99729516 + 1.5 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) -88508 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 216.833-13 chr17 72611110 72611462 + 1.5 NA intron (NR_033876, intron 3 of 4) intron (NR_033876, intron 3 of 4) -18482 NR_137281 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 243 chr1 92599153 92599598 + 1.5 NA intron (NM_001350198, intron 18 of 19) intron (NM_001350198, intron 18 of 19) -112450 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 192-18 chr18 63808693 63808855 + 1.5 NA Intergenic Intergenic 30997 NM_001261830 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 245-33 chr7 25164909 25165135 + 1.5 NA intron (NM_138811, intron 3 of 9) L1PB1|LINE|L1 15332 NM_001371351 223.333-17 chr14 70703015 70703247 + 1.5 NA intron (NR_125769, intron 2 of 3) (TA)n|Simple_repeat|Simple_repeat 4433 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 328.501 chr1 202817569 202817992 + 1.5 NA Intergenic AluSx1|SINE|Alu -2477 NR_038135 641515 Hs.23459 NR_038135 ENSG00000184774 MGAT4EP - MGAT4 family member E, pseudogene pseudo 386-5 chr3 157865234 157865746 + 1.5 NA Intergenic Intergenic 240673 NM_001163678 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 277.334-3 chr2 229619649 229619869 + 1.5 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 94796 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 197.833-13 chr15 35306129 35306350 + 1.5 NA Intergenic Intergenic 66125 NR_037507 100500904 NR_037507 ENSG00000265102 MIR3942 - microRNA 3942 ncRNA 313.167 chr1 179050106 179050334 + 1.5 NA intron (NM_001324310, intron 2 of 7) intron (NM_001324310, intron 2 of 7) 24096 NM_001324311 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 232.5-20 chr3 116000794 116001116 + 1.5 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -95829 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 388.667-5 chr4 95129720 95130076 + 1.5 NA exon (NM_001203, exon 9 of 13) exon (NM_001203, exon 9 of 13) 38407 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 184.167-17 chr18 69564819 69565021 + 1.5 NA intron (NM_152721, intron 2 of 7) intron (NM_152721, intron 2 of 7) 94989 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 261-5 chr12 85003463 85003747 + 1.5 NA Intergenic L1PA16|LINE|L1 32672 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 240.167-6 chr12 102813500 102813733 + 1.5 NA intron (NR_033855, intron 4 of 4) intron (NR_033855, intron 4 of 4) 10783 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 224.5-13 chr16 63922672 63922944 + 1.5 NA Intergenic Intergenic 1199255 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 263.667-17 chr5 76278299 76278640 + 1.5 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) -124816 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 187.334-3 chr15 86865471 86865734 + 1.5 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -67278 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 322.5-15 chr22 22186492 22187086 + 1.5 NA Intergenic L3|LINE|CR1 -57997 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 211.5-50 chr9 110193894 110194088 + 1.5 NA Intergenic Intergenic 14142 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 364.167-4 chr3 88218955 88219398 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 69217 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 223-26 chr20 54655936 54656125 + 1.5 NA Intergenic L1MC|LINE|L1 180437 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 235.167-17 chr18 21191941 21192239 + 1.5 NA Intergenic LTR16B2|LTR|ERVL -50152 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 378.333-2 chr11 94417465 94417798 + 1.5 NA 3' UTR (NM_005590, exon 19 of 19) 3' UTR (NM_005590, exon 19 of 19) -16212 NM_001330345 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 250.5-15 chr2 77709338 77709584 + 1.5 NA Intergenic L2a|LINE|L2 -187028 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 302.667-13 chr7 135801303 135801511 + 1.5 NA Intergenic Intergenic -52594 NM_001369697 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 299.333-15 chr5 36685648 36685935 + 1.5 NA intron (NM_004172, intron 9 of 9) Charlie1b|DNA|hAT-Charlie 79185 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 240.667-30 chr4 187618769 187619150 + 1.5 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) 53682 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 483.333-6 chr9 121319732 121320214 + 1.5 NA intron (NM_000177, intron 9 of 16) intron (NM_000177, intron 9 of 16) 20142 NM_000177 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 226.5-38 chr7 3767404 3767596 + 1.5 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -362185 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 286.666-2 chr15 64099264 64099540 + 1.5 NA intron (NM_003099, intron 1 of 14) intron (NM_003099, intron 1 of 14) 3420 NM_003099 6642 Hs.188634 NM_003099 ENSG00000028528 SNX1 HsT17379|VPS5 sorting nexin 1 protein-coding 242.667-2 chr1 173798825 173799213 + 1.5 NA TTS (NM_001127181) TTS (NM_001127181) 25113 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 275.5-20 chr3 109195434 109195744 + 1.5 NA Intergenic Intergenic 17424 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 221-2 chr10 33889121 33889378 + 1.5 NA Intergenic AluJb|SINE|Alu -116569 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 292-24 chr8 75260699 75260947 + 1.5 NA intron (NR_103849, intron 1 of 1) L1PBa1|LINE|L1 17658 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 275.667-26 chr8 35211695 35212116 + 1.5 NA Intergenic Intergenic -23570 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 333.833-10 chr4 36585187 36585533 + 1.5 NA intron (NR_149124, intron 2 of 4) MIR|SINE|MIR 56540 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 192.333-32 chr3 15427390 15427673 + 1.5 NA promoter-TSS (NM_001301790) promoter-TSS (NM_001301790) 13 NM_001330662 131965 Hs.149487 NM_152396 ENSG00000206562 METTL6 - methyltransferase like 6 protein-coding 454.833 chr1 48263369 48263809 + 1.5 NA Intergenic Intergenic 40873 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 626.834 chr8 96164416 96165176 + 1.5 NA Intergenic Intergenic -3990 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 227.167-17 chr3 59966132 59966534 + 1.5 NA intron (NM_001320901, intron 5 of 6) MER91A|DNA|hAT-Tip100 114576 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 298-20 chr7 84628609 84629154 + 1.5 NA Intergenic L1ME1|LINE|L1 96405 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 275-3 chr1 218259535 218259925 + 1.5 NA Intergenic L2c|LINE|L2 -25563 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 640.333-2 chr5 85094590 85095269 + 1.5 NA Intergenic Intergenic -710049 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 356.667-10 chr6 102958079 102958415 + 1.5 NA Intergenic Intergenic 1559262 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 213.333-19 chr20 50033850 50034206 + 1.5 NA Intergenic Intergenic 7601 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 271.833-16 chr8 4399990 4400581 + 1.5 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 594629 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 304.167 chr1 229661214 229661488 + 1.5 NA Intergenic Intergenic 35104 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 439.5-2 chr22 37316749 37317644 + 1.5 NA Intergenic Intergenic 34688 NM_013385 27128 Hs.170944 NM_013385 ENSG00000100055 CYTH4 CYT4|DJ63G5.1|PSCD4|cytohesin-4 cytohesin 4 protein-coding 421-9 chr8 99822640 99822937 + 1.5 NA intron (NM_017890, intron 50 of 61) Charlie1a|DNA|hAT-Charlie 70919 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 346.667-5 chr12 39617643 39618045 + 1.5 NA intron (NM_005164, intron 1 of 9) intron (NM_005164, intron 1 of 9) 1959 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 466.5-2 chr12 45130542 45131219 + 1.5 NA Intergenic Intergenic -65469 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 474.833 chr1 91244756 91245227 + 1.5 NA Intergenic Intergenic 159846 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 246-21 chr22 27909342 27909610 + 1.5 NA intron (NM_001284278, intron 3 of 11) L1ME3G|LINE|L1 9738 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 320-13 chr4 25421870 25422253 + 1.5 NA Intergenic Intergenic 44798 NM_001286756 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 340.5-9 chr8 11202521 11202869 + 1.5 NA promoter-TSS (NM_173683).2 promoter-TSS (NM_173683).2 -862 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 500.333-3 chr22 36123784 36124452 + 1.5 NA Intergenic Intergenic 36637 NM_014349 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 319.5-5 chr14 45780023 45780257 + 1.5 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat -64538 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 452.5-4 chr3 73978577 73979030 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie 169559 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 210.167-6 chr1 216627253 216627425 + 1.5 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 96090 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 261.667-5 chr10 74079477 74079824 + 1.5 NA intron (NM_014000, intron 6 of 21) intron (NM_014000, intron 6 of 21) 71178 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 614.833-4 chr8 119073833 119074530 + 1.5 NA intron (NM_006438, intron 1 of 5) L1MA2|LINE|L1 -5399 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 303.333-20 chr8 57564516 57564953 + 1.5 NA Intergenic Intergenic -181415 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 247-11 chr14 45299640 45299857 + 1.5 NA Intergenic L3|LINE|CR1 -46546 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 183.333-16 chr12 12560239 12560443 + 1.5 NA intron (NM_030640, intron 1 of 6).2 intron (NM_030640, intron 1 of 6).2 2522 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 261-7 chr15 70763623 70763925 + 1.5 NA promoter-TSS (NM_018003) promoter-TSS (NM_018003) -216 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 295.167-16 chr4 102449671 102449913 + 1.5 NA intron (NR_136202, intron 2 of 4) intron (NR_136202, intron 2 of 4) -51567 NM_001165412 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 292.167-4 chr10 59756234 59756674 + 1.5 NA Intergenic MER92-int|LTR|ERV1 -2999 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 193.333-54 chr9 96666767 96666970 + 1.5 NA Intergenic Intergenic -11551 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 598.833-2 chr8 73305453 73306081 + 1.5 NA intron (NM_172037, intron 2 of 5) intron (NM_172037, intron 2 of 5) 11165 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 452.499 chr10 67727172 67727619 + 1.5 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -31200 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 195.333-18 chr20 7281866 7282204 + 1.5 NA Intergenic Intergenic 25397 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 196.333-41 chr6 47249072 47249409 + 1.5 NA intron (NM_014452, intron 4 of 5) L2c|LINE|L2 60665 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 175.833-24 chr2 197191374 197191651 + 1.5 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) -6479 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 509.334-2 chr8 93694029 93694508 + 1.5 NA intron (NR_033858, intron 1 of 10) intron (NR_033858, intron 1 of 10) 6165 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 249.667-34 chr8 119155338 119155599 + 1.5 NA Intergenic Intergenic -52895 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 427.167-8 chr22 40651825 40652224 + 1.5 NA Intergenic Intergenic -15305 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 390.666-2 chr1 119066648 119067150 + 1.5 NA intron (NM_015836, intron 2 of 5) L1ME3Cz|LINE|L1 19494 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 167.833-9 chr12 45246457 45246619 + 1.5 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) 30443 NM_001204803 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 370.333-3 chr12 40454563 40454904 + 1.5 NA intron (NM_173600, intron 43 of 173) intron (NM_173600, intron 43 of 173) 61339 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 202-20 chr2 177719390 177719608 + 1.5 NA intron (NM_001077197, intron 13 of 20) intron (NM_001077197, intron 13 of 20) 46177 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 249-28 chr4 113668920 113669135 + 1.5 NA intron (NM_001221, intron 2 of 18) intron (NM_001221, intron 2 of 18) 92711 NM_001321567 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 394.501 chr1 8987826 8988465 + 1.5 NA Intergenic Intergenic 38200 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 814.5-4 chr8 103414782 103415642 + 1.5 NA promoter-TSS (NM_030780) promoter-TSS (NM_030780) -105 NM_030780 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 265.5-33 chr9 107341389 107341583 + 1.5 NA Intergenic Intergenic 56717 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 248.833-4 chr1 92227609 92227905 + 1.5 NA intron (NM_001012425, intron 1 of 5) L1MEg|LINE|L1 9842 NM_001012425 388649 Hs.558823 NM_001012425 ENSG00000203910 C1orf146 - chromosome 1 open reading frame 146 protein-coding 229.667-27 chr5 12101023 12101179 + 1.5 NA Intergenic Intergenic -196655 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 204.167-17 chr3 109155832 109156119 + 1.5 NA Intergenic Intergenic 19256 NR_161294 401081 Hs.280892 NM_001351622 ENSG00000241224 C3orf85 - chromosome 3 open reading frame 85 protein-coding 428.333-2 chr22 26545915 26546356 + 1.5 NA intron (NM_003595, intron 1 of 6) intron (NM_003595, intron 1 of 6) 9188 NR_031615 100313914 NR_031615 ENSG00000221760 MIR548J MIRN548J|hsa-mir-548j microRNA 548j ncRNA 204.833-2 chr10 17990554 17990786 + 1.5 NA intron (NM_001282734, intron 6 of 11) intron (NM_001282734, intron 6 of 11) 19892 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 388.334-6 chr14 71033044 71033359 + 1.5 NA intron (NM_014982, intron 16 of 35) intron (NM_014982, intron 16 of 35) 125742 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 255.5-23 chr22 19813710 19813920 + 1.5 NA intron (NM_053004, intron 4 of 7) AluJb|SINE|Alu 41059 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 314-14 chr3 30709783 30710106 + 1.5 NA Intergenic MER39|LTR|ERV1 103343 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 488.333 chr12 117832996 117833753 + 1.5 NA intron (NM_173598, intron 3 of 19) AluJr|SINE|Alu 135616 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 287.5-4 chr12 30790898 30791149 + 1.5 NA Intergenic LTR39|LTR|ERV1 -4658 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 319.334-6 chr17 61797681 61798143 + 1.5 NA intron (NM_032043, intron 9 of 19) L1ME4b|LINE|L1 65647 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 358.167-2 chr10 17030417 17030862 + 1.5 NA intron (NM_001081, intron 27 of 66) AluSx1|SINE|Alu 99178 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 311-10 chr2 98338085 98338330 + 1.5 NA Intergenic L1ME1|LINE|L1 -7948 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 283.5-11 chr3 148459889 148460117 + 1.5 NA Intergenic Intergenic 179112 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 206.333-8 chr10 12467073 12467254 + 1.5 NA intron (NM_001351032, intron 3 of 11) AluSx1|SINE|Alu 78181 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 176.167-21 chr17 28763656 28763926 + 1.5 NA intron (NM_001288631, intron 2 of 3) MIR|SINE|MIR 19780 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding 327.5-3 chr10 129095776 129096013 + 1.5 NA Intergenic Intergenic 183061 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 408.166 chr10 15904116 15904648 + 1.5 NA Intergenic Intergenic -43849 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 235.833-9 chr2 237504406 237504771 + 1.5 NA intron (NM_024101, intron 2 of 15) intron (NM_024101, intron 2 of 15) -6343 NR_106869 102465486 NR_106869 ENSG00000277842 MIR6811 hsa-mir-6811 microRNA 6811 ncRNA 247-26 chr4 85717745 85718046 + 1.5 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -4573 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 199-23 chr2 74865161 74865334 + 1.5 NA intron (NM_000189, intron 2 of 17) intron (NM_000189, intron 2 of 17) 32592 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 278.666 chr10 70269725 70270053 + 1.5 NA intron (NM_022146, intron 1 of 3) L2a|LINE|L2 14115 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 267.5-6 chr10 124903513 124903812 + 1.5 NA Intergenic AluSz|SINE|Alu -38461 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 332.166-7 chr5 140855805 140856084 + 1.5 NA promoter-TSS (NM_018901) promoter-TSS (NM_018901) 47 NM_031860 56139 Hs.199343 NM_018901 ENSG00000250120 PCDHA10 CNR8|CNRN8|CNRS8|CRNR8|PCDH-ALPHA10 protocadherin alpha 10 protein-coding 434-13 chr8 77997554 77997898 + 1.5 NA Intergenic L1MC1|LINE|L1 -518614 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 380.667-7 chr5 151774909 151775269 + 1.5 NA intron (NM_198395, intron 1 of 11) intron (NM_198395, intron 1 of 11) -2913 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 202.167-34 chr7 53673487 53673729 + 1.5 NA intron (NR_038371, intron 5 of 5) intron (NR_038371, intron 5 of 5) 138323 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 474.167-3 chr14 62548434 62549281 + 1.5 NA Intergenic L1PA13|LINE|L1 -408884 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 239-28 chr4 62184355 62184603 + 1.5 NA Intergenic MER57E1|LTR|ERV1 -22714 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 166-29 chr14 99266687 99266867 + 1.5 NA intron (NM_022898, intron 1 of 2) intron (NM_022898, intron 1 of 2) 5420 NM_138576 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 241 chr1 112529289 112529506 + 1.5 NA 3' UTR (NM_024494, exon 5 of 5) 3' UTR (NM_024494, exon 5 of 5) 20432 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 319.833-14 chr9 19457561 19458073 + 1.5 NA Intergenic Intergenic 48808 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 272.166-2 chr11 44165340 44165866 + 1.5 NA intron (NM_001178083, intron 8 of 14) intron (NM_001178083, intron 8 of 14) 69406 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 213.167-8 chr14 52789590 52789886 + 1.5 NA intron (NM_198066, intron 1 of 5) intron (NM_198066, intron 1 of 5) 1869 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 273.334-2 chr12 97309606 97309901 + 1.5 NA Intergenic LTR37B|LTR|ERV1 -153023 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 337-7 chr2 68314256 68314516 + 1.5 NA intron (NM_015463, intron 2 of 2) L1M5|LINE|L1 5665 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 263.333-22 chr6 93818064 93818330 + 1.5 NA Intergenic MamGypLTR3a|LTR|Gypsy 99894 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 280.833-9 chr20 14379535 14379889 + 1.5 NA intron (NM_001351663, intron 3 of 17) L1MB4|LINE|L1 -42045 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 354.167-5 chr2 135321095 135321415 + 1.5 NA intron (NM_001286569, intron 6 of 21) L1ME1|LINE|L1 184627 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 243.5-11 chr19 35774253 35774579 + 1.5 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat -1148 NM_001366178 115703 Hs.515364 NM_052948 ENSG00000004777 ARHGAP33 NOMA-GAP|SNX26|TCGAP Rho GTPase activating protein 33 protein-coding 260-23 chr4 179626217 179626548 + 1.5 NA Intergenic Intergenic 1532767 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 245-11 chr15 74800114 74800547 + 1.5 NA intron (NM_004383, intron 5 of 12) intron (NM_004383, intron 5 of 12) -11573 NR_039738 100616183 NR_039738 ENSG00000264386 MIR4513 - microRNA 4513 ncRNA 290.5-7 chr15 40823793 40824115 + 1.5 NA intron (NM_001130143, intron 1 of 4) FLAM_C|SINE|Alu 4754 NM_017726 54866 Hs.192927 NM_017726 ENSG00000166143 PPP1R14D CPI17-like|GBPI-1|GBPI1 protein phosphatase 1 regulatory inhibitor subunit 14D protein-coding 389.667-9 chr6 27376030 27376316 + 1.5 NA promoter-TSS (NR_024553) promoter-TSS (NR_024553) -799 NR_024553 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 165-25 chr19 18459964 18460090 + 1.5 NA intron (NM_006532, intron 5 of 11) intron (NM_006532, intron 5 of 11) -21894 NM_001170938 51477 Hs.405873 NM_016368 ENSG00000105655 ISYNA1 INO1|INOS|IPS|IPS 1|IPS-1 inositol-3-phosphate synthase 1 protein-coding 235-26 chr5 97590777 97591085 + 1.5 NA intron (NR_105028, intron 2 of 3) L1MA7|LINE|L1 86235 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 497.166 chr2 7044202 7044875 + 1.5 NA TTS (NM_001349183) TTS (NM_001349183) 33342 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 295.167-12 chr21 15879635 15879948 + 1.5 NA 3' UTR (NM_001352561, exon 24 of 24) 3' UTR (NM_001352561, exon 24 of 24) 149809 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 281.5-5 chr12 25549780 25550005 + 1.5 NA intron (NM_001352234, intron 1 of 8) intron (NM_001352234, intron 1 of 8) 3391 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 243.667-2 chr10 4571867 4572064 + 1.5 NA Intergenic Intergenic -84191 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 198.167-21 chr3 58248243 58248414 + 1.5 NA intron (NM_020676, intron 1 of 8) L1ME4b|LINE|L1 10536 NM_001320126 57406 Hs.476454 NM_020676 ENSG00000163686 ABHD6 - abhydrolase domain containing 6 protein-coding 574.833 chr11 43889923 43890422 + 1.5 NA intron (NM_139178, intron 6 of 9) intron (NM_139178, intron 6 of 9) -7131 NR_026952 729799 Hs.368920 NR_026952 ENSG00000213693 SEC14L1P1 - SEC14 like 1 pseudogene 1 pseudo 200.834-2 chr1 105831067 105831255 + 1.5 NA Intergenic Intergenic 197092 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 372.334-2 chr12 56635072 56635434 + 1.5 NA intron (NM_001351156, intron 1 of 30) intron (NM_001351156, intron 1 of 30) 1106 NM_001351156 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 181-35 chr5 68239354 68239517 + 1.5 NA intron (NM_181523, intron 2 of 15) intron (NM_181523, intron 2 of 15) 23679 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 206-23 chr2 221181567 221181719 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 390661 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 251.833 chr1 46133186 46133437 + 1.5 NA promoter-TSS (NM_001328653) promoter-TSS (NM_001328653) -60 NR_125987 101929626 Hs.534951 NR_125987 ENSG00000227857 LOC101929626 - uncharacterized LOC101929626 ncRNA 323.834-4 chr3 79768832 79769235 + 1.5 NA Intergenic Intergenic -1035 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 425.5-7 chr4 45240026 45240572 + 1.5 NA Intergenic AluJb|SINE|Alu -513665 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 433.667-2 chr5 37330248 37330679 + 1.5 NA intron (NM_001278312, intron 14 of 33) MIR|SINE|MIR 40643 NM_004298 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 349-12 chr20 45890177 45890462 + 1.5 NA exon (NM_001278535, exon 1 of 2) exon (NM_001278535, exon 1 of 2) 175 NM_000308 5476 Hs.609336 NM_000308 ENSG00000064601 CTSA GLB2|GSL|NGBE|PPCA|PPGB cathepsin A protein-coding 266.833-24 chr8 131803779 131804051 + 1.5 NA Intergenic MIRb|SINE|MIR -100178 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 291.167-6 chr14 69093739 69093981 + 1.5 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 58739 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 342.5-4 chr12 12791916 12792327 + 1.5 NA TTS (NM_001130415) TTS (NM_001130415) 6462 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 263.833-2 chr10 96334702 96335061 + 1.5 NA intron (NM_001017520, intron 9 of 10) intron (NM_001017520, intron 9 of 10) 22278 NM_001284323 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 314.167-14 chrX 115679446 115679897 + 1.5 NA Intergenic MER90|LTR|ERV1 86120 NM_001172335 5358 Hs.496622 NM_005032 ENSG00000102024 PLS3 BMND18|T-plastin plastin 3 protein-coding 241.167-19 chr20 23012361 23012665 + 1.5 NA Intergenic Intergenic -22907 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 313.333-11 chr2 18293184 18293584 + 1.5 NA Intergenic Intergenic 267269 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 437-12 chrX 30308131 30308438 + 1.5 NA exon (NM_000475, exon 1 of 2) exon (NM_000475, exon 1 of 2) 1106 NM_000475 190 Hs.268490 NM_000475 ENSG00000169297 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0 group B member 1 protein-coding 225-12 chr17 61308215 61308527 + 1.5 NA intron (NM_001330413, intron 23 of 25) (CCACCCC)n|Simple_repeat|Simple_repeat 59333 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 169.5-11 chr11 79061164 79061324 + 1.5 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 340865 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 267-24 chr2 227129741 227129997 + 1.5 NA intron (NM_000092, intron 4 of 47) (TAT)n|Simple_repeat|Simple_repeat 34690 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 436.833-6 chr2 118864971 118865575 + 1.5 NA Intergenic Intergenic -17090 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 167.5-38 chr7 23955312 23955465 + 1.5 NA Intergenic L1M2|LINE|L1 245169 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 285.334 chr10 85549761 85550033 + 1.5 NA Intergenic L1ME1|LINE|L1 -27834 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 317.667-8 chr2 190047051 190047319 + 1.5 NA Intergenic L2c|LINE|L2 15544 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 189.667-14 chr13 46909795 46909931 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie -12787 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 360-12 chr4 36819700 36819972 + 1.5 NA Intergenic Intergenic -177936 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 377-10 chr3 34918821 34919169 + 1.5 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 475028 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 398.833-7 chr3 22115651 22116261 + 1.5 NA Intergenic Intergenic 158817 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 171-38 chr20 38041026 38041231 + 1.5 NA intron (NM_021215, intron 2 of 6) intron (NM_021215, intron 2 of 6) 7382 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 332.5-3 chr12 9209823 9210096 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -1564 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 656.499 chr8 46038848 46039448 + 1.5 NA Intergenic Intergenic 578495 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 205.333 chr1 42106561 42106704 + 1.5 NA Intergenic L1ME3G|LINE|L1 -46778 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 314.5-11 chr2 70395503 70395995 + 1.5 NA Intergenic L1MC3|LINE|L1 85891 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 181.5-20 chr17 58939543 58939767 + 1.5 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 167225 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 261.666-2 chr1 166374837 166375060 + 1.5 NA Intergenic Intergenic 115091 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 246.166-2 chr19 49701888 49702061 + 1.5 NA intron (NM_152359, intron 6 of 18) L1MCa|LINE|L1 10858 NR_108072 126129 Hs.112195 NM_152359 ENSG00000169169 CPT1C CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC|SPG73 carnitine palmitoyltransferase 1C protein-coding 338.5-10 chr5 59378264 59378602 + 1.5 NA intron (NM_001165899, intron 3 of 16) L1PA8|LINE|L1 -21463 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 205.334-5 chr12 60318663 60318925 + 1.5 NA Intergenic L1MEg|LINE|L1 629424 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 238-11 chr14 73808860 73809215 + 1.5 NA Intergenic AluJb|SINE|Alu 21098 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 210-19 chr18 13653616 13653759 + 1.5 NA TTS (NM_181481) TTS (NM_181481) 11929 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 333.833-5 chr15 25849304 25849526 + 1.5 NA promoter-TSS (NR_039865) promoter-TSS (NR_039865) -590 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 272.5-18 chr2 198319302 198319636 + 1.5 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 55628 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 496.833 chr7 77734601 77735266 + 1.5 NA intron (NM_198467, intron 1 of 7) L2a|LINE|L2 -37588 NR_038361 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 398-3 chr12 30754983 30755388 + 1.5 NA promoter-TSS (NM_001319846) promoter-TSS (NM_001319846) 111 NR_135046 645485 Hs.232332 NR_135046 ENSG00000246331 LOC645485 - uncharacterized LOC645485 ncRNA 307.333-14 chr6 137223289 137223509 + 1.5 NA Intergenic Intergenic -3969 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 245.167-4 chr10 121844484 121844913 + 1.5 NA intron (NM_001001976, intron 8 of 11) L1MC3|LINE|L1 83333 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 224.167-25 chr5 6874846 6875065 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -47034 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 263-6 chr11 37089267 37089475 + 1.5 NA Intergenic Intergenic -491092 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 277.666-2 chr10 70882388 70882740 + 1.5 NA TTS (NM_001289797) TTS (NM_001289797) 5317 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 270.5 chr1 43528896 43529317 + 1.5 NA intron (NM_001329137, intron 2 of 34) intron (NM_001329137, intron 2 of 34) -1754 NM_001329139 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 328.333-12 chr6 169412743 169413082 + 1.5 NA Intergenic Intergenic -158798 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 233.167-14 chr4 242202 242464 + 1.5 NA intron (NR_027481, intron 1 of 1) HERVK-int|LTR|ERVK 29733 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 493 chr2 132994337 132994739 + 1.5 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 78981 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 168.167-24 chr3 180980090 180980402 + 1.5 NA 3' UTR (NM_001013439, exon 18 of 18) 3' UTR (NM_001013439, exon 18 of 18) 9272 NM_001190233 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 287.667-25 chr6 132999570 132999857 + 1.5 NA Intergenic Intergenic -88367 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 349.833-10 chr5 59983314 59983651 + 1.5 NA intron (NM_001165899, intron 3 of 16) L1ME3|LINE|L1 -89756 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 307.333-2 chr10 16264575 16265012 + 1.5 NA Intergenic L1PREC2|LINE|L1 -172150 NM_001001484 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 485.333-2 chr14 64413036 64413718 + 1.5 NA intron (NM_005956, intron 4 of 27) intron (NM_005956, intron 4 of 27) 25024 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 207.667-35 chr5 5613907 5614068 + 1.5 NA Intergenic LTR16A|LTR|ERVL 191310 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 318.833 chr1 80909362 80909722 + 1.5 NA Intergenic Intergenic 268255 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 310.166 chr10 108940717 108941057 + 1.5 NA Intergenic MIR|SINE|MIR -871594 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 492.667 chr1 151594004 151594576 + 1.5 NA Intergenic Intergenic -17760 NM_001330723 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin 27 protein-coding 420.5-3 chr1 222712501 222713013 + 1.5 NA promoter-TSS (NM_001288580) promoter-TSS (NM_001288580) 193 NM_144695 148362 Hs.534965 NM_144695 ENSG00000162819 BROX C1orf58 BRO1 domain and CAAX motif containing protein-coding 261.667-25 chr7 48439771 48439996 + 1.5 NA intron (NM_152701, intron 42 of 61) MLT1E1A|LTR|ERVL-MaLR 268425 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 409.5-8 chr8 123980549 123980836 + 1.5 NA exon (NM_001039112, exon 11 of 41) exon (NM_001039112, exon 11 of 41) 60090 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 248.5-11 chr15 33657787 33658025 + 1.5 NA intron (NM_001243996, intron 32 of 102) intron (NM_001243996, intron 32 of 102) -310591 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 223-2 chr1 235970262 235970487 + 1.5 NA Intergenic AluSc8|SINE|Alu -86661 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 234.333-19 chr20 14717417 14717918 + 1.5 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 163283 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 345.167-2 chr10 130109596 130110140 + 1.5 NA intron (NR_034125, intron 1 of 7) MLT1L-int|LTR|ERVL-MaLR 949 NR_034125 387723 Hs.127394 NM_001355042 ENSG00000237489 C10orf143 LINC00959 chromosome 10 open reading frame 143 protein-coding 335.667-13 chr20 56200441 56200890 + 1.5 NA Intergenic MamGypLTR3|LTR|Gypsy -48067 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 294.5-27 chrX 72189342 72189610 + 1.5 NA intron (NM_006223, intron 2 of 3) L1MD1|LINE|L1 7719 NM_006223 5303 Hs.655623 NM_006223 ENSG00000102309 PIN4 EPVH|PAR14|PAR17 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 protein-coding 262.833-5 chr14 57876520 57876864 + 1.5 NA Intergenic Intergenic -10600 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 290.833-7 chr22 44626341 44626712 + 1.5 NA Intergenic (GTTAGG)n|Simple_repeat|Simple_repeat -1107 NR_044991 414351 Hs.572878 NR_044991 LINC00229 C22orf10|NCRNA00229|dJ474I12.C22.2 long intergenic non-protein coding RNA 229 ncRNA 272-5 chr1 167044986 167045223 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X 45273 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 349-2 chr1 44729045 44729395 + 1.5 NA Intergenic L2a|LINE|L2 1948 NR_002755 26830 NR_002755 ENSG00000200169 RNU5D-1 RNU5D|U5DL|U5DS RNA, U5D small nuclear 1 snRNA 230.833-21 chr9 87159247 87159436 + 1.5 NA non-coding (NR_161226, exon 2 of 2) non-coding (NR_161226, exon 2 of 2) 10697 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 294.167-9 chr3 29656637 29657159 + 1.5 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 277258 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 262-2 chr1 102347637 102347861 + 1.5 NA Intergenic Intergenic -350515 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 241.5-17 chr5 67509958 67510192 + 1.5 NA Intergenic L1MC2|LINE|L1 136714 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 250.333 chr1 9793953 9794188 + 1.5 NA intron (NM_001009566, intron 1 of 18) intron (NM_001009566, intron 1 of 18) 30456 NM_001302883 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 230.167-12 chr3 13528576 13528841 + 1.5 NA Intergenic Intergenic -20417 NM_001004019 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 316.501 chr22 49632650 49632925 + 1.5 NA intron (NM_001289922, intron 1 of 5) intron (NM_001289922, intron 1 of 5) 24732 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 170.333-48 chr6 19557462 19557692 + 1.5 NA Intergenic MIR3|SINE|MIR 107756 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 402.167-4 chr16 2882727 2883237 + 1.5 NA promoter-TSS (NM_138439) promoter-TSS (NM_138439) -213 NM_001142499 114984 Hs.534525 NM_138439 ENSG00000162076 FLYWCH2 - FLYWCH family member 2 protein-coding 177.5-31 chr2 119882717 119882957 + 1.5 NA intron (NM_002830, intron 8 of 26) intron (NM_002830, intron 8 of 26) 122915 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 197-31 chr6 96173654 96174035 + 1.5 NA intron (NM_006581, intron 2 of 2) intron (NM_006581, intron 2 of 2) 157870 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 443-7 chr7 85186797 85187602 + 1.5 NA Intergenic Intergenic -65268 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 327-14 chr3 110900406 110900628 + 1.5 NA Intergenic Intergenic 169442 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 324.667-20 chr7 2354109 2354973 + 1.5 NA promoter-TSS (NM_001362791) promoter-TSS (NM_001362791) -286 NM_001362791 8662 Hs.371001 NM_003751 ENSG00000106263 EIF3B EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 eukaryotic translation initiation factor 3 subunit B protein-coding 322.667-6 chr12 77759505 77760005 + 1.5 NA Intergenic Intergenic -71139 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 353.5-5 chr11 6443550 6444014 + 1.5 NA Intergenic Intergenic -2795 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 268.667-26 chr6 157666537 157666768 + 1.5 NA intron (NM_153746, intron 8 of 8) intron (NM_153746, intron 8 of 8) 137520 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 371.167 chr10 64295666 64296149 + 1.5 NA Intergenic Intergenic -529621 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 187.833-31 chr8 29934824 29934998 + 1.5 NA intron (NR_024473, intron 2 of 2) MamGypLTR3|LTR|Gypsy 13398 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 384.833-5 chr16 13280451 13280803 + 1.5 NA Intergenic L1MC|LINE|L1 379029 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 336.333-4 chr12 3486320 3486698 + 1.5 NA non-coding (NR_126055, exon 2 of 2) non-coding (NR_126055, exon 2 of 2) -4694 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 250.333-22 chr9 69672971 69673245 + 1.5 NA promoter-TSS (NM_001163).2 promoter-TSS (NM_001163).2 -737 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 431-5 chr14 61391275 61391703 + 1.5 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 70046 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 216.167-27 chr8 88340259 88340545 + 1.5 NA Intergenic Intergenic -12919 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 264-4 chr1 232201926 232202173 + 1.5 NA Intergenic L1MD2|LINE|L1 276215 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 219.167-12 chr4 73798670 73799204 + 1.5 NA Intergenic L1MC3|LINE|L1 -37741 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 443.334-4 chr2 238785213 238785645 + 1.5 NA Intergenic Intergenic 62478 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 433.167-3 chr6 85525672 85526207 + 1.5 NA intron (NM_001350538, intron 21 of 28) intron (NM_001350538, intron 21 of 28) 67919 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 224.5-29 chr3 197719152 197719406 + 1.5 NA intron (NM_001145642, intron 1 of 20) AluSq2|SINE|Alu 17625 NM_014687 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 rubicon autophagy regulator protein-coding 339-2 chr1 211846997 211847413 + 1.5 NA TTS (NR_135818) TTS (NR_135818) 16244 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 346.5-4 chr16 84544832 84545172 + 1.5 NA Intergenic Intergenic -40343 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 321-7 chr14 42202818 42203216 + 1.5 NA Intergenic AluSx|SINE|Alu 596161 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 176.667-16 chr15 25817466 25817699 + 1.5 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 31243 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 417.833-6 chr22 28846201 28846716 + 1.5 NA Intergenic Intergenic -37114 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 301.833-13 chr7 111080090 111080466 + 1.5 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -10728 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 259-7 chr10 9799978 9800229 + 1.5 NA Intergenic L2c|LINE|L2 -258619 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 233-27 chr6 9979405 9979601 + 1.5 NA Intergenic Intergenic -424999 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 608.166 chr19 50368509 50369818 + 1.5 NA Intergenic MIRb|SINE|MIR -3524 NM_004851 9476 Hs.512843 NM_004851 ENSG00000131400 NAPSA KAP|Kdap|NAP1|NAPA|SNAPA napsin A aspartic peptidase protein-coding 333.166-6 chr20 32039390 32039752 + 1.5 NA Intergenic L1ME2z|LINE|L1 -12671 NM_001172131 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 306.5-5 chr12 4726896 4727287 + 1.5 NA intron (NM_017417, intron 2 of 10) intron (NM_017417, intron 2 of 10) 6691 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 346.167-9 chr3 88214756 88215084 + 1.5 NA Intergenic Intergenic 64961 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 293.833-5 chr14 70835235 70835544 + 1.5 NA Intergenic MER21C|LTR|ERVL -25876 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 401.333-5 chr19 30393310 30393681 + 1.5 NA intron (NM_014717, intron 1 of 4) L2b|LINE|L2 21111 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 235.5-15 chr3 189248927 189249205 + 1.5 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -8472 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 454.834-2 chr16 13935261 13935672 + 1.5 NA exon (NM_005236, exon 8 of 11) exon (NM_005236, exon 8 of 11) 15309 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 294.833-11 chr8 56242035 56242561 + 1.5 NA Intergenic Intergenic 30509 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 237-27 chr3 179652695 179652875 + 1.5 NA promoter-TSS (NM_003940) promoter-TSS (NM_003940) -255 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 549.334-3 chr5 49660027 49660517 + 1.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 781016 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 255.5-28 chr4 99082429 99082751 + 1.5 NA intron (NM_000671, intron 2 of 8) intron (NM_000671, intron 2 of 8) 6198 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 439.167-7 chr5 57687307 57687673 + 1.5 NA Intergenic Intergenic 36830 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 223.5-27 chr8 84898705 84898898 + 1.5 NA intron (NM_001287244, intron 7 of 7) L2b|LINE|L2 192874 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 169-7 chr11 39858769 39858907 + 1.5 NA Intergenic Intergenic 434292 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 194.167-11 chr13 69708242 69708455 + 1.5 NA intron (NM_001286725, intron 8 of 9) intron (NM_001286725, intron 8 of 9) -398865 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 206.333-17 chr17 45000282 45000438 + 1.5 NA Intergenic MIR|SINE|MIR -32057 NM_006688 10882 Hs.134012 NM_006688 ENSG00000131094 C1QL1 C1QRF|C1QTNF14|CRF|CTRP14 complement C1q like 1 protein-coding 335.833-7 chr19 48203792 48204082 + 1.5 NA non-coding (NR_147707, exon 11 of 11) non-coding (NR_147707, exon 11 of 11) 33257 NM_199341 374920 Hs.664054 NM_199341 ENSG00000185453 ZSWIM9 C19orf68 zinc finger SWIM-type containing 9 protein-coding 254.667-27 chr5 81427041 81427254 + 1.5 NA intron (NM_001345886, intron 15 of 15) intron (NM_001345886, intron 15 of 15) -33013 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 185.834 chr1 119268311 119268505 + 1.5 NA intron (NR_125975, intron 6 of 6) L1MC|LINE|L1 -59844 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 308.5-14 chr2 57538264 57538850 + 1.5 NA Intergenic Intergenic -369094 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 175.667-53 chr8 127135441 127135576 + 1.5 NA Intergenic Intergenic -53287 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 198-4 chr1 150195968 150196168 + 1.5 NA Intergenic Intergenic 35340 NR_135098 105371433 Hs.599366 NR_135098 LOC105371433 - uncharacterized LOC105371433 ncRNA 179.333-39 chr5 18886443 18886670 + 1.5 NA Intergenic Intergenic 999716 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 862.833 chr12 71415039 71416275 + 1.5 NA Intergenic L1MB7|LINE|L1 -24141 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 312.333-18 chr4 180940043 180940398 + 1.5 NA Intergenic Intergenic 218929 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 262.5-25 chr6 70859893 70860137 + 1.5 NA 3' UTR (NM_080742, exon 4 of 4) 3' UTR (NM_080742, exon 4 of 4) 97045 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 263-12 chr7 5678242 5678419 + 1.5 NA intron (NR_046834, intron 1 of 2) intron (NR_046834, intron 1 of 2) 2131 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 191.333-39 chr6 119869794 119869985 + 1.5 NA Intergenic Intergenic -145290 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 361.333-8 chr9 137049744 137050071 + 1.5 NA exon (NM_001246, exon 7 of 9) exon (NM_001246, exon 7 of 9) -3730 NM_015392 56654 Hs.719906 NM_015392 ENSG00000107281 NPDC1 CAB|CAB-|CAB-1|CAB1|NPDC-1 neural proliferation, differentiation and control 1 protein-coding 774.5 chr5 134140421 134141333 + 1.5 NA exon (NM_001346425, exon 6 of 11) exon (NM_001346425, exon 6 of 11) 17259 NM_001366502 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 protein-coding 368.333-10 chr8 119754991 119755421 + 1.5 NA intron (NM_003184, intron 22 of 25) intron (NM_003184, intron 22 of 25) 77635 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 319-2 chr12 33653811 33654234 + 1.5 NA Intergenic MER57F|LTR|ERV1 -214203 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 188.833-37 chr8 127842318 127842671 + 1.5 NA intron (NR_003367, intron 1 of 8) AluJr|SINE|Alu 46532 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 275.833-19 chr3 67054738 67055120 + 1.5 NA Intergenic L1MB7|LINE|L1 56622 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 300.5-6 chr14 37873680 37873928 + 1.5 NA Intergenic HAL1|LINE|L1 28320 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 241-21 chr4 62933263 62933476 + 1.5 NA Intergenic Intergenic -771604 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 201.833-12 chr20 35388977 35389117 + 1.5 NA intron (NM_018244, intron 2 of 9) AluSx|SINE|Alu 22926 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 234.5-21 chr19 29344359 29344582 + 1.5 NA intron (NR_040029, intron 9 of 9) L1MB3|LINE|L1 -131319 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 363.5-9 chr8 109783340 109783761 + 1.5 NA Intergenic Intergenic -91759 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 215-10 chr14 36454222 36454467 + 1.5 NA Intergenic Intergenic 59191 NR_161363 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 367-16 chr20 24252195 24252509 + 1.5 NA Intergenic Intergenic 52585 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 233.667-3 chr10 69801880 69802126 + 1.5 NA promoter-TSS (NM_001130103) promoter-TSS (NM_001130103) 97 NM_001320951 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 310.5-10 chr20 3774231 3774446 + 1.5 NA Intergenic AluSx1|SINE|Alu -5950 NR_047675 54976 Hs.274422 NM_017874 ENSG00000101220 C20orf27 - chromosome 20 open reading frame 27 protein-coding 367-13 chr2 63833256 63833838 + 1.5 NA Intergenic Intergenic -7417 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 278.5-14 chr3 67678941 67679307 + 1.5 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 24427 NR_109993 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 311.167-10 chr4 3345826 3346307 + 1.5 NA intron (NM_002926, intron 3 of 16) MER65-int|LTR|ERV1 -24132 NM_198227 6002 Hs.527061 NM_002926 ENSG00000159788 RGS12 - regulator of G protein signaling 12 protein-coding 630.5 chr19 55599176 55600027 + 1.5 NA promoter-TSS (NM_032836) promoter-TSS (NM_032836) -84 NM_032836 84922 Hs.515617 NM_032836 ENSG00000179943 FIZ1 ZNF798 FLT3 interacting zinc finger 1 protein-coding 522.833-2 chr14 76913313 76913835 + 1.5 NA Intergenic Intergenic -46064 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 203-2 chr1 42044799 42045014 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -8972 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 206.5-49 chr6 81528118 81528344 + 1.5 NA Intergenic MIRb|SINE|MIR 224450 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 369.833-3 chr4 30806787 30807161 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 86605 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 310.834-3 chr3 24223395 24223755 + 1.5 NA intron (NM_001354714, intron 2 of 8) L1MC4|LINE|L1 72251 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 358-3 chr11 111940756 111941039 + 1.5 NA intron (NM_001037954, intron 1 of 19) L2b|LINE|L2 3554 NM_001037954 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 277.5-7 chr18 11099919 11100255 + 1.5 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 48675 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 316.167-14 chr6 137799889 137800185 + 1.5 NA Intergenic Intergenic -61000 NR_121619 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 281.333-22 chr5 30191026 30191342 + 1.5 NA Intergenic Intergenic 310624 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 278.666-5 chr16 13130674 13131007 + 1.5 NA intron (NM_001145204, intron 2 of 4) L1PA11|LINE|L1 229242 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 166.667-53 chr9 28299703 28299846 + 1.5 NA intron (NM_001354574, intron 4 of 5) MIRb|SINE|MIR 419531 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 178.833-34 chr6 83914121 83914272 + 1.5 NA intron (NM_016230, intron 4 of 15) intron (NM_016230, intron 4 of 15) 54507 NM_016230 51167 Hs.5741 NM_016230 ENSG00000065615 CYB5R4 NCB5OR|cb5/cb5R|dJ676J13.1 cytochrome b5 reductase 4 protein-coding 402-6 chr2 98529229 98529627 + 1.5 NA intron (NM_001351428, intron 4 of 24) L1MB7|LINE|L1 79084 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 235.166-2 chr17 35563172 35563640 + 1.5 NA Intergenic AluY|SINE|Alu -4708 NR_135479 105371743 NR_135479 SNHG30 LINC02001 small nucleolar RNA host gene 30 ncRNA 409-3 chr14 68939989 68940449 + 1.5 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 39083 NM_001130005 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 212-13 chr11 23955398 23955668 + 1.5 NA Intergenic Intergenic -536343 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 223.333-41 chr6 123372119 123372368 + 1.5 NA intron (NM_001251987, intron 19 of 20) intron (NM_001251987, intron 19 of 20) -67361 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 206.834-7 chr16 77953336 77953484 + 1.5 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -69138 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 207.333-42 chr6 62989353 62989600 + 1.5 NA Intergenic L1PB1|LINE|L1 330501 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 204.167-20 chr4 30620891 30621155 + 1.5 NA Intergenic Intergenic -99346 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 276.5-15 chr5 170877988 170878336 + 1.5 NA exon (NM_022897, exon 2 of 28) exon (NM_022897, exon 2 of 28) 16144 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 596.667-3 chr3 44988017 44988528 + 1.5 NA intron (NR_023353, intron 1 of 6) L1MC4a|LINE|L1 12023 NR_023353 23016 Hs.719958 NM_015004 ENSG00000075914 EXOSC7 EAP1|RRP42|Rrp42p|hRrp42p|p8 exosome component 7 protein-coding 478-6 chr9 81848388 81849234 + 1.5 NA Intergenic Intergenic -64626 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 174.5-34 chr8 77566313 77566514 + 1.5 NA Intergenic Intergenic 115716 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 285-15 chr4 66599091 66599382 + 1.5 NA Intergenic L1MA5|LINE|L1 322412 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 321.333-7 chr17 66007488 66007922 + 1.5 NA intron (NM_001353129, intron 16 of 26) intron (NM_001353129, intron 16 of 26) -181162 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 457.334 chr16 76197010 76197487 + 1.5 NA Intergenic Intergenic -80153 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 295.167-7 chr13 23159445 23159817 + 1.5 NA Intergenic Intergenic -21290 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 214.834 chr1 68045664 68045830 + 1.5 NA TTS (NM_004675) TTS (NM_004675) 5884 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 238.5-29 chr7 73635692 73635952 + 1.5 NA Intergenic (CATC)n|Simple_repeat|Simple_repeat -11300 NR_134541 51085 Hs.647055 NM_032951 ENSG00000009950 MLXIPL CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein like protein-coding 450.667-8 chr8 118947979 118948756 + 1.5 NA intron (NM_002546, intron 1 of 4) intron (NM_002546, intron 1 of 4) 3518 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 193.333-51 chr8 117746991 117747210 + 1.5 NA Intergenic Intergenic 173813 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 382.167-4 chr13 69524600 69525048 + 1.5 NA Intergenic Intergenic 302478 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 231.333-35 chr7 97570280 97570546 + 1.5 NA Intergenic L1MEg|LINE|L1 -161673 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 233.667-11 chr14 59838266 59838506 + 1.5 NA intron (NM_021136, intron 1 of 8) L1ME4a|LINE|L1 32390 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 209.833-9 chr13 110870749 110871093 + 1.5 NA promoter-TSS (NR_027701) promoter-TSS (NR_027701) -613 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 222-4 chr1 164714268 164714445 + 1.5 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 60285 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 197.667-37 chr3 109125465 109125742 + 1.5 NA Intergenic Intergenic -7469 NM_014429 27136 Hs.591296 NM_014429 ENSG00000114487 MORC1 CT33|MORC|ZCW6 MORC family CW-type zinc finger 1 protein-coding 281.334-11 chr5 159107677 159108050 + 1.5 NA intron (NR_109890, intron 1 of 2) MIRb|SINE|MIR 7380 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 200.167-17 chr3 29752373 29752606 + 1.5 NA intron (NM_001003792, intron 5 of 13) LTR1E|LTR|ERV1 181667 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 262.333-4 chr10 101230642 101230884 + 1.5 NA intron (NR_029380, intron 1 of 2) intron (NR_029380, intron 1 of 2) 1169 NR_029380 399806 Hs.386143 NR_029380 LBX1-AS1 MUSE LBX1 antisense RNA 1 ncRNA 261.666-7 chr2 173176391 173176732 + 1.5 NA intron (NM_133646, intron 3 of 11) L1MB7|LINE|L1 100715 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 471.167 chr10 110311287 110311834 + 1.5 NA Intergenic Intergenic -6640 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 229.333-30 chr5 15542453 15542665 + 1.5 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 41121 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 272.5-20 chr3 48040011 48040298 + 1.5 NA intron (NM_002375, intron 1 of 18) intron (NM_002375, intron 1 of 18) 48694 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 400.167-4 chr6 56135540 56135902 + 1.5 NA intron (NM_030820, intron 12 of 29) intron (NM_030820, intron 12 of 29) -44059 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 278.167-16 chr2 96740327 96740686 + 1.5 NA promoter-TSS (NM_001142292) promoter-TSS (NM_001142292) -414 NM_001322350 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 206.667-8 chr11 120807546 120807793 + 1.5 NA intron (NM_001282470, intron 3 of 19) intron (NM_001282470, intron 3 of 19) 11446 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 269.333-17 chr3 114299628 114299819 + 1.5 NA intron (NM_173799, intron 3 of 3) intron (NM_173799, intron 3 of 3) 5695 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 247.5-20 chr2 27486888 27487180 + 1.5 NA intron (NM_015662, intron 1 of 47) AluSz|SINE|Alu 2709 NM_015662 26160 Hs.127401 NM_015662 ENSG00000138002 IFT172 BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim intraflagellar transport 172 protein-coding 195.667-27 chr2 241198613 241198798 + 1.5 NA intron (NM_001370694, intron 4 of 24) intron (NM_001370694, intron 4 of 24) 10028 NM_001001666 50636 Hs.163909 NM_001001666 ENSG00000146205 ANO7 D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G anoctamin 7 protein-coding 381.5 chr12 15531929 15532528 + 1.5 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -14383 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 203.5-40 chr8 17379662 17379942 + 1.5 NA intron (NM_004686, intron 1 of 13) (TGTTTT)n|Simple_repeat|Simple_repeat 33549 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 206.667-9 chr12 5294004 5294223 + 1.5 NA Intergenic Intergenic -50962 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 262.833-4 chr13 26062622 26063054 + 1.5 NA Intergenic Intergenic -3316 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 281.5-15 chr4 61249037 61249386 + 1.5 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 47039 NM_001371342 244.5 chr1 167607964 167608156 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -22133 NM_001322923 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 382.501-2 chr5 19950182 19950480 + 1.5 NA intron (NM_001349562, intron 2 of 13) L1PB1|LINE|L1 37869 NM_001349560 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 204.167-8 chr15 99039236 99039396 + 1.5 NA Intergenic HAL1M8|LINE|L1 24612 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 174.667-58 chr8 120440930 120441147 + 1.5 NA intron (NM_014078, intron 2 of 6) L2a|LINE|L2 4112 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 337.333-10 chr9 131738198 131738711 + 1.5 NA promoter-TSS (NM_005312) promoter-TSS (NM_005312) -916 NM_005312 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 287.999 chr12 32672118 32672506 + 1.5 NA Intergenic Intergenic -6888 NM_012063 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 302.5-6 chr10 83541846 83542116 + 1.5 NA Intergenic LTR82B|LTR|ERVL 135108 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 396-11 chrX 76253389 76253866 + 1.5 NA Intergenic Intergenic 80565 NM_016500 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 310.167-2 chr1 12407190 12407570 + 1.5 NA intron (NM_015378, intron 63 of 69) intron (NM_015378, intron 63 of 69) -99866 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 183.5-18 chr19 40635956 40636108 + 1.5 NA Intergenic L1MC4|LINE|L1 34663 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 288.5-5 chr10 55709715 55710061 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -81946 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 286-20 chr5 45061805 45062181 + 1.5 NA Intergenic L1MC4a|LINE|L1 253046 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 236.667-36 chr8 102299835 102300033 + 1.5 NA intron (NM_001282873, intron 23 of 58) intron (NM_001282873, intron 23 of 58) 60483 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 252.167-20 chr5 96595671 96596014 + 1.5 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -66195 NM_001190442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 254.667-4 chr10 75704583 75704824 + 1.5 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -7752 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 294.167-4 chr11 94400657 94400987 + 1.5 NA intron (NM_016540, intron 1 of 3) intron (NM_016540, intron 1 of 3) 597 NM_016540 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 380-15 chr7 23714713 23715235 + 1.5 NA intron (NM_031414, intron 3 of 23) intron (NM_031414, intron 3 of 23) 4755 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 214-21 chr16 83670366 83670886 + 1.5 NA intron (NM_001220489, intron 7 of 12) MLT1J2|LTR|ERVL-MaLR 133350 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 256.833-14 chr6 77284237 77284515 + 1.5 NA Intergenic L1MC4|LINE|L1 179646 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 271-11 chr17 58593152 58593340 + 1.5 NA intron (NM_031272, intron 15 of 31) intron (NM_031272, intron 15 of 31) -48918 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 288.666-5 chr15 90272657 90273057 + 1.5 NA TTS (NR_028052) TTS (NR_028052) -7098 NR_102428 10519 Hs.715556 NM_006384 ENSG00000185043 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 protein-coding 341.667-12 chr3 55303445 55304023 + 1.5 NA Intergenic AluSc|SINE|Alu 125562 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 214-16 chr14 59883451 59883640 + 1.5 NA Intergenic Intergenic -12769 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 364.5-5 chr2 31688376 31688824 + 1.5 NA Intergenic Intergenic -107662 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 255.667-19 chr9 109880684 109880999 + 1.5 NA intron (NM_053016, intron 3 of 6) Tigger15a|DNA|TcMar-Tigger 100643 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 549 chr1 20659685 20660520 + 1.5 NA intron (NM_005216, intron 2 of 10) L3|LINE|CR1 1442 NM_005216 1650 Hs.523145 NM_005216 ENSG00000244038 DDOST AGER1|CDG1R|GATD6|OKSWcl45|OST|OST48|WBP1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit protein-coding 208.667-11 chr12 12416550 12416742 + 1.5 NA intron (NM_001300742, intron 2 of 3).2 AluJo|SINE|Alu 59568 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 269.833-10 chr5 143740802 143741047 + 1.5 NA Intergenic Intergenic 61064 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 239-3 chr11 87436742 87437038 + 1.5 NA Intergenic L2c|LINE|L2 282521 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 369.5-14 chr4 107736078 107736566 + 1.5 NA Intergenic PABL_B-int|LTR|ERV1 -16088 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 228.5-16 chr2 187569716 187569941 + 1.5 NA Intergenic Intergenic -15323 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 194.833-28 chr8 42798466 42798658 + 1.5 NA Intergenic AluSc|SINE|Alu -29776 NM_001199279 8973 Hs.103128 NM_004198 ENSG00000147434 CHRNA6 CHNRA6 cholinergic receptor nicotinic alpha 6 subunit protein-coding 312.667-18 chr4 114811678 114812019 + 1.5 NA Intergenic Intergenic 155089 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 329.5-4 chr13 63864096 63864490 + 1.5 NA Intergenic L1MA4A|LINE|L1 -20168 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 230.833-15 chr5 105301095 105301311 + 1.5 NA Intergenic HAL1|LINE|L1 201729 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 218-20 chr2 26462608 26462906 + 1.5 NA intron (NM_194322, intron 23 of 28) MER45A|DNA|hAT-Tip100 15367 NM_004802 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 209.5-19 chr16 81280763 81280981 + 1.5 NA exon (NM_017429, exon 8 of 11) exon (NM_017429, exon 8 of 11) -34094 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 200.667-8 chr10 100945066 100945310 + 1.5 NA intron (NM_018121, intron 12 of 19) intron (NM_018121, intron 12 of 19) -27341 NM_017893 57715 Hs.591923 NM_017893 ENSG00000095539 SEMA4G - semaphorin 4G protein-coding 293.167-9 chr3 130538989 130539451 + 1.5 NA Intergenic Intergenic -21114 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 285.833-11 chr5 24696420 24696773 + 1.5 NA Intergenic Intergenic -51618 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 242.833-5 chr11 25015192 25015495 + 1.5 NA intron (NM_001009909, intron 9 of 11) L1MD3|LINE|L1 518290 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 742.833 chr13 27829619 27830771 + 1.5 NA intron (NR_047484, intron 3 of 4) intron (NR_047484, intron 3 of 4) 37712 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 316.5-2 chr1 194699692 194700104 + 1.5 NA Intergenic Intergenic 1388817 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 447.667-7 chr3 40985070 40985562 + 1.5 NA Intergenic Intergenic -214189 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 546.833 chr12 68216212 68216818 + 1.5 NA intron (NM_018402, intron 3 of 4) intron (NM_018402, intron 3 of 4) 9295 NM_018402 55801 Hs.272350 NM_018402 ENSG00000111536 IL26 AK155|IL-26 interleukin 26 protein-coding 274.833-11 chr3 195476827 195477092 + 1.5 NA Intergenic L1MA8|LINE|L1 -33939 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 372-12 chr4 81810685 81811371 + 1.5 NA Intergenic MIR|SINE|MIR -339121 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 292.167-2 chr1 51184205 51184524 + 1.5 NA Intergenic Intergenic 50732 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 383.167 chr1 65064515 65064932 + 1.5 NA intron (NM_001321853, intron 2 of 26) intron (NM_001321853, intron 2 of 26) 3023 NM_001321852 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 456.666-2 chr9 35103170 35103526 + 1.5 NA promoter-TSS (NM_001287032) promoter-TSS (NM_001287032) -153 NM_001287033 30968 Hs.3439 NM_013442 ENSG00000165283 STOML2 HSPC108|SLP-2 stomatin like 2 protein-coding 205.833-19 chr2 239106481 239106775 + 1.5 NA intron (NM_006037, intron 15 of 26) intron (NM_006037, intron 15 of 26) -20702 NR_039643 100616493 NR_039643 ENSG00000264810 MIR4441 - microRNA 4441 ncRNA 360-2 chr1 174334464 174334807 + 1.5 NA intron (NM_001366445, intron 11 of 13) L2a|LINE|L2 59535 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 251.833-12 chr4 124940350 124940758 + 1.5 NA Intergenic Intergenic -227822 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 327.5-12 chr18 30281122 30281473 + 1.5 NA Intergenic Intergenic -17613 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 361.5-7 chr17 75331160 75331616 + 1.5 NA intron (NM_002086, intron 3 of 5) intron (NM_002086, intron 3 of 5) -41939 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 194.5-27 chr19 9384724 9384975 + 1.5 NA Intergenic L1M5|LINE|L1 8533 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 333.5-20 chr5 100425701 100426173 + 1.5 NA Intergenic Intergenic -37683 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 367-3 chr10 120862833 120863100 + 1.5 NA intron (NM_018117, intron 5 of 28) intron (NM_018117, intron 5 of 28) 11604 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 221-35 chr8 88684958 88685216 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -357604 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 193.5-3 chr1 42846375 42846566 + 1.5 NA promoter-TSS (NM_015911) promoter-TSS (NM_015911) -103 NM_015911 51058 Hs.20879 NM_015911 ENSG00000164011 ZNF691 Zfp691 zinc finger protein 691 protein-coding 253.167-21 chr7 34497141 34497552 + 1.5 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -160872 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 297 chr1 26621613 26621897 + 1.5 NA Intergenic Intergenic 67213 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 435.166 chr1 153355928 153356249 + 1.5 NA Intergenic L2a|LINE|L2 -1766 NM_002965 6280 Hs.112405 NM_002965 ENSG00000163220 S100A9 60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14 S100 calcium binding protein A9 protein-coding 353.5 chr1 159091213 159091510 + 1.5 NA Intergenic Intergenic -14460 NM_001348247 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 319.833-9 chr20 44975474 44975737 + 1.5 NA TTS (NR_147974) TTS (NR_147974) 9093 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 308-5 chr11 87811446 87811766 + 1.5 NA Intergenic Intergenic -92195 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 319.5-17 chr7 114123930 114124236 + 1.5 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 37756 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 219.5-10 chr14 53339506 53339803 + 1.5 NA Intergenic Intergenic 186300 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 207.5-24 chr20 54867410 54867636 + 1.5 NA Intergenic Intergenic 391930 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 216-36 chr3 191721540 191721759 + 1.5 NA Intergenic MER65A|LTR|ERV1 260486 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 297.333-9 chr2 57412173 57412588 + 1.5 NA Intergenic L1MA2|LINE|L1 -495271 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 420.5-2 chr1 75375517 75375865 + 1.5 NA intron (NM_001320283, intron 1 of 21) L1PA17|LINE|L1 235423 NM_001320285 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 240.5-30 chr9 23043250 23043456 + 1.5 NA Intergenic Intergenic 397153 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 224-10 chr12 113234908 113235091 + 1.5 NA intron (NM_001351346, intron 3 of 28) intron (NM_001351346, intron 3 of 28) -9262 NM_001301214 53373 Hs.524763 NM_017901 ENSG00000186815 TPCN1 TPC1 two pore segment channel 1 protein-coding 232-3 chr1 159171983 159172209 + 1.5 NA intron (NM_001127173, intron 1 of 8) intron (NM_001127173, intron 1 of 8) 481 NM_001127173 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 370.667-8 chr6 21589467 21589797 + 1.5 NA Intergenic Intergenic -4119 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box transcription factor 4 protein-coding 172.667-5 chr10 4719115 4719456 + 1.5 NA Intergenic MIR|SINE|MIR -41215 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 269.333-5 chr14 49815327 49815580 + 1.5 NA intron (NM_001301732, intron 16 of 31) intron (NM_001301732, intron 16 of 31) 37335 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 323-20 chr3 184289597 184289913 + 1.5 NA intron (NM_014693, intron 13 of 18) intron (NM_014693, intron 13 of 18) -9486 NM_002808 5708 Hs.518464 NM_002808 ENSG00000175166 PSMD2 P97|RPN1|S2|TRAP2 proteasome 26S subunit, non-ATPase 2 protein-coding 411.666-3 chr2 163175626 163176183 + 1.5 NA Intergenic Intergenic -337137 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 178.333-18 chr2 59306571 59306789 + 1.5 NA Intergenic L2|LINE|L2 88972 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 272.333-14 chr7 101313678 101313999 + 1.5 NA 3' UTR (NM_001287525, exon 6 of 6) 3' UTR (NM_001287525, exon 6 of 6) 5531 NR_110115 101927746 NR_110115 LOC101927746 - uncharacterized LOC101927746 ncRNA 331-18 chr4 78615814 78616321 + 1.5 NA Intergenic Intergenic -29927 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 244.334-12 chr7 99221719 99222024 + 1.5 NA Intergenic Intergenic -14382 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 614.5-2 chr10 103504013 103504921 + 1.5 NA intron (NR_120675, intron 2 of 3) L1MC3|LINE|L1 10762 NM_004210 9148 Hs.594708 NM_004210 ENSG00000107954 NEURL1 NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1 neuralized E3 ubiquitin protein ligase 1 protein-coding 360.5-9 chr4 111094404 111094834 + 1.5 NA Intergenic L1MC1|LINE|L1 -233972 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 329.5-15 chr4 62021678 62022161 + 1.5 NA intron (NM_001371343, intron 20 of 23) Tigger1|DNA|TcMar-Tigger 139846 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 231-19 chr2 201071790 201072038 + 1.5 NA promoter-TSS (NM_173822) promoter-TSS (NM_173822) -87 NM_001257102 4709 Hs.109760 NM_002491 ENSG00000119013 NDUFB3 B12|CI-B12|MC1DN25 NADH:ubiquinone oxidoreductase subunit B3 protein-coding 180-28 chr17 60608280 60608471 + 1.5 NA intron (NM_003620, intron 1 of 5) L1ME3C|LINE|L1 8192 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 408.5-5 chr8 58042267 58042746 + 1.5 NA intron (NM_147189, intron 2 of 4) intron (NM_147189, intron 2 of 4) 47983 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 280.5-8 chr14 95774285 95774558 + 1.5 NA Intergenic Intergenic 58938 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 190-32 chr2 193242045 193242237 + 1.5 NA Intergenic Intergenic 492296 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 261.166-2 chr5 27995589 27995877 + 1.5 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat 291932 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 691.167-2 chr7 117385717 117386432 + 1.5 NA intron (NM_001301821, intron 4 of 12) intron (NM_001301821, intron 4 of 12) 41419 NM_130768 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 176-16 chr17 43007668 43007850 + 1.5 NA intron (NM_005533, intron 1 of 6) AluSz6|SINE|Alu 975 NM_001330230 3430 Hs.632258 NM_005533 ENSG00000068079 IFI35 IFP35 interferon induced protein 35 protein-coding 520.667-2 chr14 53217388 53218074 + 1.5 NA Intergenic LTR12C|LTR|ERV1 64377 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 173.333-27 chr6 35166334 35166726 + 1.5 NA Intergenic MIRc|SINE|MIR -25120 NM_018679 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 350.167-10 chr5 79022487 79022875 + 1.5 NA intron (NR_104002, intron 11 of 11) intron (NR_104002, intron 11 of 11) -36723 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 328.5-4 chr2 148458998 148459353 + 1.5 NA intron (NM_018328, intron 6 of 14) intron (NM_018328, intron 6 of 14) -185576 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 455.667 chr3 13494077 13494809 + 1.5 NA intron (NM_001330636, intron 3 of 6) (ACAC)n|Simple_repeat|Simple_repeat 14137 NM_001330636 79885 Hs.744132 NM_024827 ENSG00000163517 HDAC11 HD11 histone deacetylase 11 protein-coding 195.333-12 chr14 33404135 33404402 + 1.5 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -304669 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 192.667-39 chr8 116525796 116526027 + 1.5 NA Intergenic Intergenic -126189 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 248.5-4 chr1 241156913 241157142 + 1.5 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 24755 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 208.667-24 chr2 76532248 76532490 + 1.5 NA Intergenic Intergenic -453596 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 345-21 chr5 46055315 46055778 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -359166 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 280.5-11 chr18 11954245 11954592 + 1.5 NA Intergenic L3|LINE|CR1 -27089 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 274.667-14 chr2 66434775 66435124 + 1.5 NA promoter-TSS (NM_002398) promoter-TSS (NM_002398) -176 NM_002398 4211 Hs.526754 NM_002398 ENSG00000143995 MEIS1 - Meis homeobox 1 protein-coding 247.833-10 chr2 40757712 40757964 + 1.5 NA Intergenic Intergenic -245403 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 325.5-9 chr17 58296926 58297197 + 1.5 NA Intergenic AluSx|SINE|Alu -16126 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 364.5-15 chrX 131792441 131793144 + 1.5 NA intron (NR_026975, intron 5 of 12) intron (NR_026975, intron 5 of 12) 37851 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 249.5-20 chr5 29999130 29999357 + 1.5 NA Intergenic L2b|LINE|L2 118683 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 241.167-4 chr11 24053729 24054123 + 1.5 NA Intergenic Intergenic -443127 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 222.5-34 chr8 81887884 81888170 + 1.5 NA Intergenic Intergenic -45741 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 272.666-7 chr9 70628859 70629260 + 1.5 NA intron (NM_001366142, intron 12 of 26) intron (NM_001366142, intron 12 of 26) 181025 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 319-7 chr20 59919669 59919922 + 1.5 NA intron (NM_014258, intron 5 of 44) intron (NM_014258, intron 5 of 44) 13842 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 373.167-4 chr16 62735040 62735336 + 1.5 NA Intergenic Intergenic -698750 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 315.667-7 chr12 52924878 52925225 + 1.5 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) 1418 NM_001256282 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 476.5-5 chr4 121659187 121659913 + 1.5 NA Intergenic L1M5|LINE|L1 37430 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 318.5-5 chr2 173253259 173253686 + 1.5 NA intron (NM_016653, intron 16 of 19) MIRb|SINE|MIR 28564 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 196.5-9 chr12 52281943 52282187 + 1.5 NA intron (NM_001320198, intron 2 of 10) MIR|SINE|MIR 7420 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 198.667-39 chr5 144506772 144507286 + 1.5 NA Intergenic LTR8|LTR|ERV1 301638 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 316-7 chr2 83781847 83782281 + 1.5 NA Intergenic L1M4c|LINE|L1 259250 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 271.833-3 chr10 91745398 91745637 + 1.5 NA Intergenic AluJo|SINE|Alu 52679 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 298-13 chr3 99901136 99901685 + 1.5 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -25207 NM_001282794 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 333.5 chr1 44162028 44162377 + 1.5 NA Intergenic L1M4c|LINE|L1 -20571 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 312.833 chr1 152926744 152927031 + 1.5 NA Intergenic L2c|LINE|L2 18342 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 200.833-25 chr6 119839910 119840137 + 1.5 NA intron (NR_134600, intron 2 of 3) L1MA9|LINE|L1 -175156 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 189.667-55 chr8 118943977 118944226 + 1.5 NA intron (NM_002546, intron 1 of 4) intron (NM_002546, intron 1 of 4) 7784 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 347.5-4 chr15 69103567 69103934 + 1.5 NA Intergenic Intergenic 22900 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 368.5-7 chr2 75620028 75620553 + 1.5 NA Intergenic Intergenic -26493 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 231.5-34 chr7 95720951 95721163 + 1.5 NA Intergenic MER57B1|LTR|ERV1 -51449 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 388-14 chr8 126266056 126266392 + 1.5 NA Intergenic L1M5|LINE|L1 -59271 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 248.5-18 chr2 38315942 38316113 + 1.5 NA intron (NM_001135673, intron 4 of 12) intron (NM_001135673, intron 4 of 12) 60503 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 308.333-23 chr8 84603761 84604292 + 1.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -101901 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 218.5-7 chr11 7520610 7520908 + 1.5 NA intron (NM_003621, intron 1 of 23) intron (NM_003621, intron 1 of 23) 6760 NM_003621 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 315.5-12 chr7 36303281 36303573 + 1.5 NA Intergenic MIRb|SINE|MIR 63813 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 347.667-9 chr21 30045568 30045860 + 1.5 NA Intergenic Intergenic -105662 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 511.833-2 chr2 82007523 82008097 + 1.5 NA Intergenic Intergenic -540864 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 348.667-15 chr8 124567321 124567811 + 1.5 NA intron (NM_001282971, intron 8 of 14) intron (NM_001282971, intron 8 of 14) 28443 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 561.5 chr14 103451375 103451786 + 1.5 NA intron (NM_001128920, intron 4 of 15) intron (NM_001128920, intron 4 of 15) 66165 NM_001128918 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a|VIPB microtubule affinity regulating kinase 3 protein-coding 241.667-22 chr4 76378726 76379085 + 1.5 NA intron (NM_001042784, intron 8 of 23) intron (NM_001042784, intron 8 of 23) 28400 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 537.167-2 chr5 5886587 5887307 + 1.5 NA Intergenic Intergenic 450345 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 211.5-48 chr8 128497750 128497959 + 1.5 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 66825 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 360.833-6 chr8 6835599 6835862 + 1.5 NA promoter-TSS (NM_001289973) promoter-TSS (NM_001289973) 176 NR_045217 100652791 Hs.369771 NR_045217 ENSG00000245857 GS1-24F4.2 - uncharacterized LOC100652791 ncRNA 349.5 chr11 17722264 17722609 + 1.5 NA TTS (NM_002478) TTS (NM_002478) 2865 NM_002478 4654 Hs.181768 NM_002478 ENSG00000129152 MYOD1 MYF3|MYOD|PUM|bHLHc1 myogenic differentiation 1 protein-coding 700.001 chr12 114508428 114509154 + 1.5 NA Intergenic Intergenic -100349 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 302.5-13 chr6 153275084 153275412 + 1.5 NA Intergenic MIR3|SINE|MIR -143966 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 172.667-15 chr14 52780506 52780757 + 1.5 NA intron (NM_198066, intron 5 of 5) intron (NM_198066, intron 5 of 5) 10976 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 263.167-11 chr3 117617962 117618197 + 1.5 NA Intergenic Intergenic 72846 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 239.667-5 chr1 160140157 160140361 + 1.5 NA intron (NM_000702, intron 22 of 22) MIR3|SINE|MIR -11303 NM_144699 480 Hs.662219 NM_144699 ENSG00000132681 ATP1A4 ATP1A1|ATP1AL2 ATPase Na+/K+ transporting subunit alpha 4 protein-coding 238.5-8 chr11 113649970 113650270 + 1.5 NA Intergenic Intergenic 56188 NM_001288750 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 266-21 chr6 37236064 37236433 + 1.5 NA intron (NM_145316, intron 1 of 3) AluJo|SINE|Alu 21351 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 393.167-4 chr16 50203089 50203563 + 1.5 NA intron (NM_001365324, intron 1 of 11) intron (NM_001365324, intron 1 of 11) 49845 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 243-8 chr2 49891078 49891322 + 1.5 NA Intergenic L1MC1|LINE|L1 83003 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 172.167-31 chr8 103412187 103412378 + 1.5 NA intron (NR_102337, intron 1 of 5) intron (NR_102337, intron 1 of 5) 2825 NM_030780 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 328.833-10 chr8 16382741 16383046 + 1.5 NA Intergenic Intergenic -190102 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 213-38 chr7 34377694 34378063 + 1.5 NA intron (NR_033665, intron 3 of 3) MER57B2|LTR|ERV1 -280340 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 174.667 chr1 19249065 19249244 + 1.5 NA intron (NM_001271428, intron 1 of 22) Tigger3b|DNA|TcMar-Tigger 2370 NM_001271427 23065 Hs.439200 NM_015047 ENSG00000127463 EMC1 CAVIPMR|KIAA0090 ER membrane protein complex subunit 1 protein-coding 345-16 chr4 40486355 40486842 + 1.5 NA intron (NM_001098634, intron 2 of 6) AluSz|SINE|Alu 15521 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 250.5-11 chr18 362496 362720 + 1.5 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -94561 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 184.667-10 chr12 3170902 3171033 + 1.5 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 93588 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 324-5 chr14 53760676 53761033 + 1.5 NA Intergenic HAL1ME|LINE|L1 187630 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 320-6 chr12 78356884 78357103 + 1.5 NA intron (NR_135021, intron 1 of 1) intron (NR_135021, intron 1 of 1) 2753 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 346.5-5 chr17 58447236 58447942 + 1.5 NA intron (NM_001080439, intron 5 of 5) L1MA3|LINE|L1 -30007 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 234-11 chr11 107085265 107085566 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie -66939 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 269-3 chr10 36768642 36768838 + 1.5 NA Intergenic Intergenic -357117 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 192-46 chr8 73529539 73529739 + 1.5 NA intron (NM_001164382, intron 11 of 13) intron (NM_001164382, intron 11 of 13) 109565 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 479.333-6 chr5 95780993 95781595 + 1.5 NA intron (NM_014899, intron 9 of 11) intron (NM_014899, intron 9 of 11) 41432 NM_002064 2745 Hs.28988 NM_002064 ENSG00000173221 GLRX GRX|GRX1 glutaredoxin protein-coding 313-16 chr9 76460154 76460793 + 1.5 NA intron (NM_001490, intron 2 of 3) intron (NM_001490, intron 2 of 3) 1291 NM_001490 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 294.167-15 chr8 138687470 138687771 + 1.5 NA intron (NM_152888, intron 37 of 64) intron (NM_152888, intron 37 of 64) -189890 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 218.667-8 chr14 72510678 72511022 + 1.5 NA intron (NM_001370288, intron 14 of 16) intron (NM_001370288, intron 14 of 16) -5970 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 241.667-14 chr18 25916149 25916366 + 1.5 NA Intergenic MIRc|SINE|MIR 174356 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 196 chr1 56600243 56600630 + 1.5 NA Intergenic Intergenic -20873 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 429.834-4 chr5 44398592 44398915 + 1.5 NA intron (NR_108034, intron 2 of 2) intron (NR_108034, intron 2 of 2) -9333 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 310.667-17 chr5 22482165 22482487 + 1.5 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -268476 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 343.5-10 chr2 174143140 174143542 + 1.5 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 105191 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 332-24 chr6 158975648 158976225 + 1.5 NA non-coding (NR_144434, exon 9 of 9) non-coding (NR_144434, exon 9 of 9) 24251 NM_001346418 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 242.833-25 chr8 144019583 144020041 + 1.5 NA intron (NM_198572, intron 1 of 4) intron (NM_198572, intron 1 of 4) 7532 NM_001134374 375686 Hs.97726 NM_198572 ENSG00000186583 SPATC1 SPATA15 spermatogenesis and centriole associated 1 protein-coding 212-46 chr8 82507128 82507306 + 1.5 NA Intergenic L2a|LINE|L2 -404887 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 238.167-8 chr13 54449872 54450154 + 1.5 NA Intergenic Intergenic -137965 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 309.334-9 chr5 37932707 37932979 + 1.5 NA Intergenic Charlie18a|DNA|hAT-Charlie -15648 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 360-8 chr16 86520642 86521150 + 1.5 NA Intergenic MIRb|SINE|MIR 10369 NM_001451 2294 Hs.155591 NM_001451 ENSG00000103241 FOXF1 ACDMPV|FKHL5|FREAC1 forkhead box F1 protein-coding 205.833-2 chr10 30760887 30761053 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 37751 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 210.5-27 chr22 35612447 35612750 + 1.5 NA intron (NM_203377, intron 2 of 3) Alu|SINE|Alu 4731 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 351.333-5 chr18 61861214 61861908 + 1.5 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 31446 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 232.833-12 chr14 54552549 54552941 + 1.5 NA Intergenic Intergenic -14867 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 250-17 chr2 229034120 229034311 + 1.5 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 197877 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 258-17 chr2 74713034 74713303 + 1.5 NA Intergenic MIRb|SINE|MIR 58921 NM_001271661 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 217.5-6 chr14 74270793 74271029 + 1.5 NA Intergenic Intergenic 31462 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 374.167-7 chr4 38757771 38758369 + 1.5 NA Intergenic Intergenic 24920 NM_030956 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 416.667-7 chr3 97266606 97267013 + 1.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -172798 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 248.5-39 chr8 82705464 82705794 + 1.5 NA Intergenic Intergenic -206475 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 387.333-6 chr4 17472121 17472753 + 1.5 NA Intergenic Intergenic 39653 NM_000320 5860 Hs.75438 NM_000320 ENSG00000151552 QDPR DHPR|HDHPR|PKU2|SDR33C1 quinoid dihydropteridine reductase protein-coding 245-5 chr11 12900541 12900866 + 1.5 NA intron (NM_021961, intron 9 of 12) intron (NM_021961, intron 9 of 12) 88845 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 275-18 chr2 169022844 169023074 + 1.5 NA intron (NM_003742, intron 1 of 27) L1MC5a|LINE|L1 8365 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 277.167-2 chr13 29119920 29120126 + 1.5 NA intron (NM_001033602, intron 3 of 13) L1M5|LINE|L1 95566 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 211.5-11 chr12 14385302 14385560 + 1.5 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 150 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 274.167-10 chr3 126893292 126893551 + 1.5 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -95173 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 412-2 chr14 36617600 36617914 + 1.5 NA Intergenic LTR78|LTR|ERV1 -35143 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 527.5-5 chr5 43021213 43021883 + 1.5 NA intron (NR_104651, intron 2 of 2) LTR8A|LTR|ERV1 -1905 NR_104650 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 267.5-38 chr6 60698131 60698522 + 1.5 NA Intergenic L2c|LINE|L2 -875804 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 226.5-42 chr9 81411498 81411767 + 1.5 NA Intergenic L1MD3|LINE|L1 277903 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 181.5-51 chr7 114089830 114089965 + 1.5 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 3570 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 272.833-12 chr22 38464071 38464423 + 1.5 NA Intergenic Intergenic -3815 NM_016657 11015 Hs.745072 NM_006855 ENSG00000100196 KDELR3 ERD2L3 KDEL endoplasmic reticulum protein retention receptor 3 protein-coding 248.5-40 chr9 96662702 96662900 + 1.5 NA Intergenic L1ME3G|LINE|L1 -7484 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 204.667-22 chr2 70085808 70086013 + 1.5 NA intron (NR_033872, intron 1 of 10) intron (NR_033872, intron 1 of 10) 1105 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 343-6 chr13 100646431 100646905 + 1.5 NA intron (NM_001079669, intron 5 of 17) Charlie22a|DNA|hAT-Charlie 28127 NM_001079669 84899 Hs.190983 NM_032813 ENSG00000125247 TMTC4 - transmembrane O-mannosyltransferase targeting cadherins 4 protein-coding 210.5-31 chr4 36572800 36573042 + 1.5 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 68979 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 253-17 chr22 44828110 44828391 + 1.5 NA intron (NM_181335, intron 7 of 11) intron (NM_181335, intron 7 of 11) 75692 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 224.167-29 chr7 96164245 96164508 + 1.5 NA intron (NM_001160210, intron 13 of 17) MLT1G1|LTR|ERVL-MaLR 55380 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 224.334-3 chr13 56613192 56613369 + 1.5 NA Intergenic Intergenic -527638 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 210.167-2 chr1 68832894 68833094 + 1.5 NA Intergenic L1M4c|LINE|L1 -222904 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 312.167 chr12 30986069 30986447 + 1.5 NA intron (NM_001370301, intron 6 of 6) MIR3|SINE|MIR 59354 NM_001080509 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 316-5 chr17 60961754 60962119 + 1.5 NA intron (NM_001330413, intron 14 of 25) L1MA4|LINE|L1 284085 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 189.833-7 chr14 24413603 24413733 + 1.5 NA intron (NM_025081, intron 8 of 8) L1ME3Cz|LINE|L1 14665 NM_025081 57523 Hs.288348 NM_025081 ENSG00000205978 NYNRIN CGIN1|KIAA1305 NYN domain and retroviral integrase containing protein-coding 217.167-31 chr7 79868667 79868875 + 1.5 NA Intergenic Intergenic -266060 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 172.667-29 chr2 67947573 67948032 + 1.5 NA Intergenic Intergenic 115202 NM_173177 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 373.5-9 chr6 56772770 56773211 + 1.5 NA intron (NM_001144770, intron 2 of 94) MLT1F2|LTR|ERVL-MaLR 70675 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 251.834-3 chr15 26975151 26975446 + 1.5 NA intron (NM_001270873, intron 1 of 5) intron (NM_001270873, intron 1 of 5) 4117 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 250-29 chr6 36577384 36577671 + 1.5 NA Intergenic Intergenic -16786 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 552.499 chr5 102090987 102091428 + 1.5 NA Intergenic Intergenic 205077 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 250.5-21 chr5 152560953 152561230 + 1.5 NA Intergenic Intergenic -155812 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 309.5-3 chr15 56162710 56162945 + 1.5 NA intron (NM_001368073, intron 2 of 8) intron (NM_001368073, intron 2 of 8) 27105 NM_001368074 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 220.833-22 chr7 92528583 92528844 + 1.5 NA promoter-TSS (NM_000466) promoter-TSS (NM_000466) -82 NM_001363366 84060 Hs.21590 NM_032120 ENSG00000127993 RBM48 C7orf64|HSPC304 RNA binding motif protein 48 protein-coding 188.5-47 chr7 25229486 25229672 + 1.5 NA Intergenic Intergenic -1093 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 229.5-6 chr12 55077500 55077743 + 1.5 NA Intergenic Intergenic -52148 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 293-10 chr19 33785425 33785707 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -11304 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 360.167-4 chr3 34695995 34696377 + 1.5 NA Intergenic MIRb|SINE|MIR 697837 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 240.333-14 chr21 20611640 20611821 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 191378 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 199-44 chr6 127641162 127641333 + 1.5 NA Intergenic L1MD1|LINE|L1 64073 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 403.5-3 chr10 77116053 77116572 + 1.5 NA intron (NM_001271519, intron 6 of 28) intron (NM_001271519, intron 6 of 28) -24519 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 286.833-5 chr14 87050104 87050313 + 1.5 NA Intergenic Intergenic 144430 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 266.833-3 chr12 49838999 49839261 + 1.5 NA non-coding (NR_027499, exon 3 of 3) non-coding (NR_027499, exon 3 of 3) 3976 NM_181708 144233 Hs.142736 NM_181708 ENSG00000186666 BCDIN3D - BCDIN3 domain containing RNA methyltransferase protein-coding 323.5-18 chr7 134514080 134514416 + 1.5 NA Intergenic Intergenic -13319 NM_020299 57016 Hs.116724 NM_020299 ENSG00000198074 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1 member B10 protein-coding 424.833-2 chr2 41868814 41869482 + 1.5 NA Intergenic Intergenic -8407 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 323.5-6 chr16 12663557 12663865 + 1.5 NA 3' UTR (NM_001099455, exon 3 of 3) 3' UTR (NM_001099455, exon 3 of 3) -56610 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 209.5-22 chr2 190915510 190916262 + 1.5 NA intron (NM_014905, intron 7 of 17) Charlie2b|DNA|hAT-Charlie 35065 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 251.5-20 chr5 8505898 8506265 + 1.5 NA Intergenic Intergenic 45156 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 307.667-5 chr10 101678207 101678517 + 1.5 NA intron (NM_001323541, intron 1 of 8) intron (NM_001323541, intron 1 of 8) 16808 NR_136613 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 274-30 chr7 33396190 33396442 + 1.5 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 266752 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 236.167-17 chr9 74673541 74673883 + 1.5 NA intron (NM_006914, intron 9 of 9) intron (NM_006914, intron 9 of 9) 58178 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 296.333-16 chr6 2695708 2695909 + 1.5 NA intron (NM_001012418, intron 2 of 12) intron (NM_001012418, intron 2 of 12) 55114 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 283.666-5 chr4 72982148 72982523 + 1.5 NA Intergenic LTR37A|LTR|ERV1 87381 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 289-19 chr5 102507125 102507341 + 1.5 NA Intergenic Intergenic -8232 NM_001289002 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 191.333-35 chr5 39977368 39977549 + 1.5 NA Intergenic Intergenic -74833 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 513.833-2 chr13 47774090 47774583 + 1.5 NA Intergenic MamGypLTR3|LTR|Gypsy 158286 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 187.834-5 chr10 93445650 93445833 + 1.5 NA intron (NM_013451, intron 3 of 53) intron (NM_013451, intron 3 of 53) 36593 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 321.5-9 chr16 63092623 63092847 + 1.5 NA Intergenic Intergenic -1056297 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 222.333-14 chr17 55239604 55239803 + 1.5 NA Intergenic Intergenic -25257 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 257.333-21 chr5 148132907 148133131 + 1.5 NA intron (NM_006846, intron 31 of 32) intron (NM_006846, intron 31 of 32) -35527 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 302.667-5 chr20 41738395 41738826 + 1.5 NA Intergenic Intergenic -120233 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 352-11 chr5 97651092 97651507 + 1.5 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 146603 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 220.667-23 chr20 14243010 14243274 + 1.5 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 94470 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 316.167-7 chr2 13365412 13365635 + 1.5 NA Intergenic L1MA2|LINE|L1 -358510 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 384.5-10 chr7 14336231 14337056 + 1.5 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -345218 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 212.333-3 chr1 102114803 102114992 + 1.5 NA Intergenic Intergenic -117663 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 321.833-9 chr4 32465546 32465982 + 1.5 NA Intergenic Intergenic 114726 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 270-15 chr14 81915380 81915722 + 1.5 NA Intergenic L1MA4A|LINE|L1 -172413 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 341.5-6 chr12 10790344 10790708 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 12101 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 180-17 chr12 123984001 123984263 + 1.5 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 10917 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 276.5-10 chr2 33807866 33808319 + 1.5 NA intron (NR_126403, intron 1 of 5) L1ME3E|LINE|L1 -79875 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 211-34 chr3 113788809 113789031 + 1.5 NA intron (NM_001690, intron 7 of 14) intron (NM_001690, intron 7 of 14) 41885 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ARCL2D|ATP6A1|ATP6V1A1|HO68|IECEE3|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 431.5-5 chr5 133049659 133050149 + 1.5 NA Intergenic Intergenic -2109 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 400.833-4 chr6 44475413 44476183 + 1.5 NA Intergenic Intergenic 40157 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 202.5-47 chr6 37614953 37615128 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -59618 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 274.667-9 chr15 51381497 51381849 + 1.5 NA intron (NM_001330297, intron 2 of 9) intron (NM_001330297, intron 2 of 9) 4427 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 364.667-19 chr6 155783022 155783572 + 1.5 NA Intergenic AluSx|SINE|Alu -163500 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 254.667-18 chr2 227228057 227228295 + 1.5 NA intron (NR_102371, intron 11 of 13) intron (NR_102371, intron 11 of 13) 63611 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 385.5-2 chr12 16004882 16005272 + 1.5 NA intron (NM_015954, intron 6 of 8) intron (NM_015954, intron 6 of 8) 93745 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 382.5-5 chr2 22079943 22080222 + 1.5 NA Intergenic Intergenic -369430 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 279.501-3 chr5 83473692 83473981 + 1.5 NA intron (NM_001164098, intron 1 of 13) intron (NM_001164098, intron 1 of 13) 2092 NM_001126336 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 211.167-23 chr7 4553164 4553558 + 1.5 NA Intergenic L1M2c|LINE|L1 -128934 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 166.833-10 chr17 61745840 61746057 + 1.5 NA intron (NM_032043, intron 14 of 19) L1MEg|LINE|L1 117611 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 163.333-18 chr14 66980570 66980743 + 1.5 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -208784 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 321.5-22 chr7 71017464 71017732 + 1.5 NA Intergenic MER4A1|LTR|ERV1 -114546 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 252.167-9 chr2 68917092 68917312 + 1.5 NA Intergenic L1MB5|LINE|L1 35691 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 405.167-9 chr9 77454682 77455458 + 1.5 NA intron (NR_121184, intron 1 of 4) MLT1E1A|LTR|ERVL-MaLR 7421 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 278.833-6 chr11 38293647 38293950 + 1.5 NA Intergenic Zaphod3|DNA|hAT-Tip100 352558 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 345.167-9 chr5 72433913 72434206 + 1.5 NA Intergenic Intergenic 73351 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 395.667-3 chr11 113024296 113024752 + 1.5 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -61064 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 338.167-6 chr18 60808205 60808548 + 1.5 NA Intergenic Intergenic -435601 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 207.167-29 chr8 80942128 80942500 + 1.5 NA Intergenic L1M5|LINE|L1 -67533 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 298.5-15 chr3 39037074 39037414 + 1.5 NA intron (NM_001349253, intron 1 of 29) L1MA3|LINE|L1 14700 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 408.166-2 chr11 24751800 24752399 + 1.5 NA intron (NM_001009909, intron 4 of 11) L1MEh|LINE|L1 255046 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 633.5 chr14 21135780 21136569 + 1.5 NA Intergenic L2c|LINE|L2 19889 NM_001004731 390445 Hs.553768 NM_001004731 ENSG00000169327 OR5AU1 OR14-38 olfactory receptor family 5 subfamily AU member 1 protein-coding 223.167-18 chr5 97837595 97837981 + 1.5 NA Intergenic Intergenic -2970 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 219.5-23 chr4 112640339 112640710 + 1.5 NA intron (NM_001370978, intron 2 of 13) AluSx1|SINE|Alu 3022 NM_001370978 531-2 chr20 37218383 37218988 + 1.5 NA intron (NM_001135771, intron 8 of 16) L1MB7|LINE|L1 38223 NM_021081 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 210.833 chr1 53574210 53574365 + 1.5 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 114888 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 340-6 chr13 87388984 87389258 + 1.5 NA Intergenic L1MA5|LINE|L1 229619 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 351-15 chr8 37132685 37133191 + 1.5 NA Intergenic L1MC2|LINE|L1 348564 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 213.667-13 chr16 7292897 7293418 + 1.5 NA intron (NM_018723, intron 4 of 15) MER2|DNA|TcMar-Tigger -39688 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 193.166-3 chr4 115906435 115906573 + 1.5 NA Intergenic Intergenic -393221 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 321.167-19 chr7 7682585 7682902 + 1.5 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) 35864 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 330.667-4 chr14 25381227 25381961 + 1.5 NA Intergenic Intergenic -331297 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 412.5-4 chr8 142793266 142793641 + 1.5 NA Intergenic Intergenic -6914 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 family member D protein-coding 191.5-10 chr11 63803065 63803291 + 1.5 NA Intergenic Intergenic -10278 NM_138471 144097 Hs.502793 NM_138471 ENSG00000168005 SPINDOC C11orf84|SPIN-DOC spindlin interactor and repressor of chromatin binding protein-coding 170.333-40 chr3 118250643 118250846 + 1.5 NA Intergenic Intergenic -391024 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 239.167-28 chr4 97791307 97791597 + 1.5 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 352024 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 242.5 chr1 8030989 8031567 + 1.5 NA Intergenic Intergenic -4969 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 305.333-10 chr7 29237064 29237304 + 1.5 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -28214 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 267.167-9 chr3 197110337 197110691 + 1.5 NA intron (NM_001366216, intron 12 of 23) L1M4|LINE|L1 73358 NR_158766 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 273.333-2 chr10 108095212 108095481 + 1.5 NA Intergenic Intergenic -26053 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 254.667-32 chr7 30485954 30486226 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -7224 NM_001354849 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 314.333-10 chr7 3762407 3762713 + 1.5 NA intron (NM_152744, intron 4 of 44) MER20B|DNA|hAT-Charlie -367125 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 228.167-18 chr2 207701642 207701972 + 1.5 NA Intergenic MER96B|DNA|hAT-Tip100 -9733 NM_001330218 151195 Hs.471234 NM_152523 ENSG00000163249 CCNYL1 - cyclin Y like 1 protein-coding 334.833-6 chr3 94269096 94269462 + 1.5 NA Intergenic MamTip2|DNA|hAT-Tip100 206218 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 264 chr1 79175658 79175945 + 1.5 NA Intergenic L2|LINE|L2 -169071 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 233.5-25 chr3 7231039 7231341 + 1.5 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) 304094 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 342.167-3 chr10 6406213 6406679 + 1.5 NA intron (NM_001323267, intron 17 of 17) intron (NM_001323267, intron 17 of 17) 56130 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 300.333-6 chr15 89472947 89473263 + 1.5 NA intron (NM_001321041, intron 9 of 10) L2b|LINE|L2 23478 NM_001321041 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 320.5-4 chr10 72185913 72186413 + 1.5 NA intron (NM_001369110, intron 5 of 8) intron (NM_001369110, intron 5 of 8) 29793 NM_001369091 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 234.833-21 chr5 54509598 54509920 + 1.5 NA Intergenic Intergenic -8000 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 276.167-18 chr6 136700645 136700875 + 1.5 NA intron (NM_005923, intron 3 of 29) intron (NM_005923, intron 3 of 29) 71646 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 241-2 chr11 26634580 26634995 + 1.5 NA intron (NM_031418, intron 19 of 26) intron (NM_031418, intron 19 of 26) -62524 NM_001135092 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 283-13 chr5 30401265 30401536 + 1.5 NA Intergenic Intergenic 520840 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 188.167-33 chr6 63435635 63435787 + 1.5 NA Intergenic MER112|DNA|hAT-Charlie -115728 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 296.5-4 chr1 245079245 245079445 + 1.5 NA intron (NM_032328, intron 4 of 7) intron (NM_032328, intron 4 of 7) -75640 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 188-11 chr12 49656973 49657182 + 1.5 NA intron (NM_001367835, intron 7 of 26) intron (NM_001367835, intron 7 of 26) 26533 NM_001363607 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 242.5-30 chr3 61030387 61030610 + 1.5 NA intron (NR_148922, intron 3 of 3) MER3|DNA|hAT-Charlie 220954 NM_001354589 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 450.832 chr1 8873727 8874092 + 1.5 NA intron (NM_001353346, intron 2 of 11) intron (NM_001353346, intron 2 of 11) 4777 NM_001201483 2023 Hs.517145 NM_001428 ENSG00000074800 ENO1 ENO1L1|HEL-S-17|MPB1|NNE|PPH enolase 1 protein-coding 275.5-28 chr7 21063756 21064018 + 1.5 NA Intergenic L1MD2|LINE|L1 228456 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 276.167-6 chr12 84874763 84875060 + 1.5 NA intron (NM_182767, intron 6 of 11) intron (NM_182767, intron 6 of 11) 37888 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 325.166 chr15 71127160 71127513 + 1.5 NA Intergenic L1MA7|LINE|L1 -14113 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 305.667-3 chr10 116888755 116889005 + 1.5 NA intron (NM_018330, intron 14 of 14) MLT2F|LTR|ERVL -39158 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 486.833 chr1 41360755 41361392 + 1.5 NA promoter-TSS (NM_001291281) promoter-TSS (NM_001291281) -361 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 223.333 chr1 17274199 17274455 + 1.5 NA intron (NM_016233, intron 10 of 15) intron (NM_016233, intron 10 of 15) -3562 NR_039768 100616188 NR_039768 ENSG00000266634 MIR3972 - microRNA 3972 ncRNA 499.666 chr6 5950405 5950935 + 1.5 NA Intergenic Charlie8|DNA|hAT-Charlie 53374 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 335.5-5 chr3 94587189 94587653 + 1.5 NA Intergenic L2c|LINE|L2 -350842 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 167.333-41 chr4 59263961 59264098 + 1.5 NA Intergenic LTR52|LTR|ERVL 250456 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 242.5-46 chr8 53541556 53541759 + 1.5 NA Intergenic Intergenic -17692 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 274.666-2 chr11 112795346 112795558 + 1.5 NA Intergenic MIRc|SINE|MIR -165968 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 196.333-46 chr7 28715071 28715201 + 1.5 NA intron (NM_001011666, intron 1 of 6) intron (NM_001011666, intron 1 of 6) 29003 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 312.667-9 chr14 42607636 42607974 + 1.5 NA Intergenic Intergenic 1000949 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 270.5-36 chr8 135698435 135698732 + 1.5 NA Intergenic LTR47B2|LTR|ERVL 241127 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 326.5-9 chr19 55259223 55259661 + 1.5 NA promoter-TSS (NM_014931) promoter-TSS (NM_014931) -425 NM_014931 22870 Hs.515610 NM_014931 ENSG00000105063 PPP6R1 KIAA1115|PP6R1|SAP190|SAPS1 protein phosphatase 6 regulatory subunit 1 protein-coding 254.5-9 chr15 47498932 47499223 + 1.5 NA intron (NM_001198999, intron 3 of 19) MIRb|SINE|MIR -218428 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 406.5-4 chr14 60455499 60455825 + 1.5 NA intron (NM_174978, intron 15 of 17) MIR|SINE|MIR 30401 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 302.5-3 chr10 15428012 15428308 + 1.5 NA Intergenic Intergenic -56871 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 255-18 chr19 3324359 3324545 + 1.5 NA Intergenic MIRb|SINE|MIR -35178 NM_001245005 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 442.167 chr14 67526696 67527234 + 1.5 NA intron (NM_001348546, intron 1 of 2) intron (NM_001348546, intron 1 of 2) -6325 NM_020715 57475 Hs.594236 NM_020715 ENSG00000054690 PLEKHH1 - pleckstrin homology, MyTH4 and FERM domain containing H1 protein-coding 184.167-34 chr9 93571917 93572061 + 1.5 NA Intergenic L1MB3|LINE|L1 -4595 NM_005392 5253 Hs.211441 NM_005392 ENSG00000197724 PHF2 CENP-35|GRC5|JHDM1E|KDM7C PHD finger protein 2 protein-coding 290.5-23 chr5 35518096 35518424 + 1.5 NA Intergenic MER91A|DNA|hAT-Tip100 -99603 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 292.5-16 chr22 21106165 21106585 + 1.5 NA intron (NR_037566, intron 1 of 5) L1MA6|LINE|L1 3359 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 BCR pseudogene 2 pseudo 275.5-25 chr5 16070380 16070602 + 1.5 NA intron (NM_001102562, intron 3 of 3) intron (NM_001102562, intron 3 of 3) 109300 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 430.667-4 chr3 57692570 57693229 + 1.5 NA promoter-TSS (NR_135550) promoter-TSS (NR_135550) 178 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 236-28 chr8 123572889 123573100 + 1.5 NA Intergenic Intergenic -31788 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 347.667-6 chr16 73714309 73714708 + 1.5 NA Intergenic Intergenic 327703 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 230.333-16 chr17 77002549 77002818 + 1.5 NA Intergenic Intergenic -33484 NR_136417 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 206.667-34 chr3 1172868 1173076 + 1.5 NA intron (NM_001289080, intron 2 of 22) intron (NM_001289080, intron 2 of 22) 79948 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 319.833-5 chr11 90479225 90479447 + 1.5 NA intron (NR_104190, intron 1 of 6) L1ME1|LINE|L1 76521 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 208.5-24 chr2 198028740 198028935 + 1.5 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 224244 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 227.333-12 chr14 62415176 62415461 + 1.5 NA Intergenic L1MD2|LINE|L1 -275345 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 554.667-2 chr17 48814358 48814960 + 1.5 NA intron (NM_001130918, intron 1 of 15) intron (NM_001130918, intron 1 of 15) 2431 NM_001366314 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 330.167-2 chr12 30790148 30790473 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -5371 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 319.333-12 chr5 74176871 74177178 + 1.5 NA Intergenic Intergenic 131301 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 399.667-2 chr10 6774501 6775057 + 1.5 NA non-coding (NR_108074, exon 2 of 2) non-coding (NR_108074, exon 2 of 2) 4401 NR_108074 100652997 Hs.255086 NR_108074 ENSG00000281186 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 261.5-27 chr3 153034291 153034585 + 1.5 NA Intergenic L1MEi|LINE|L1 -127788 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 268.834 chr1 205256388 205256613 + 1.5 NA promoter-TSS (NM_001331034) promoter-TSS (NM_001331034) 299 NM_001297613 9911 Hs.6360 NM_014858 ENSG00000133069 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 210-15 chr15 27059613 27059828 + 1.5 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 88539 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 310.167-9 chr5 99334039 99334378 + 1.5 NA Intergenic LTR16A|LTR|ERVL -199782 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 377.833-6 chr8 34891127 34891440 + 1.5 NA Intergenic HUERS-P3b-int|LTR|ERV1 107362 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 194.667-11 chr10 94128373 94128772 + 1.5 NA intron (NM_001165979, intron 1 of 31) intron (NM_001165979, intron 1 of 31) -19778 NR_120615 101927049 Hs.144492 NR_120615 ENSG00000232913 PLCE1-AS2 - PLCE1 antisense RNA 2 ncRNA 274-22 chr3 156794102 156794345 + 1.5 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 17798 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 363.667-10 chr22 41413618 41414003 + 1.5 NA Intergenic CpG 31868 NM_003216 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF transcription factor, PAR bZIP family member protein-coding 197-3 chr1 102628297 102628577 + 1.5 NA Intergenic Intergenic 480059 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 212-28 chr20 53728111 53728363 + 1.5 NA Intergenic Intergenic 119883 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 287.167-3 chr11 62786905 62787552 + 1.5 NA promoter-TSS (NM_001363599) promoter-TSS (NM_001363599) -174 NM_001363600 374395 Hs.381134 NM_199337 ENSG00000185475 TMEM179B - transmembrane protein 179B protein-coding 245.833-25 chr8 124673613 124673819 + 1.5 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 54757 NM_001363295 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 258-36 chr8 65369669 65369871 + 1.5 NA Intergenic L1PA16|LINE|L1 -189430 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 412.667-7 chr3 17639513 17640213 + 1.5 NA intron (NM_001349090, intron 1 of 21) MER117|DNA|hAT-Charlie 60157 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 246.5-12 chr15 64286756 64286976 + 1.5 NA intron (NM_001329607, intron 2 of 11) intron (NM_001329607, intron 2 of 11) 69307 NM_001329607 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 267.167-5 chr18 5307611 5308043 + 1.5 NA Intergenic Intergenic -10774 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 357.667-9 chr2 57599329 57599737 + 1.5 NA Intergenic Intergenic -308118 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 253-32 chr9 106838646 106839015 + 1.5 NA Intergenic Intergenic -24336 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 226.667-15 chr15 73941005 73941433 + 1.5 NA intron (NM_005576, intron 1 of 6) intron (NM_005576, intron 1 of 6) -12971 NR_040068 100287616 Hs.599785 NR_040066 ENSG00000261801 LOXL1-AS1 - LOXL1 antisense RNA 1 ncRNA 174.833-20 chr5 172298132 172298265 + 1.5 NA non-coding (NR_130933, exon 2 of 2) non-coding (NR_130933, exon 2 of 2) 12601 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 351-9 chr3 134600975 134601220 + 1.5 NA 3' UTR (NM_001366276, exon 10 of 10) 3' UTR (NM_001366276, exon 10 of 10) 49921 NM_001366276 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 170.667-25 chr20 53946945 53947136 + 1.5 NA intron (NM_001366297, intron 8 of 8) (AGTATAT)n|Simple_repeat|Simple_repeat -71331 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 494.833-4 chr6 161370932 161371681 + 1.5 NA intron (NM_004562, intron 10 of 11) AluSq2|SINE|Alu -97245 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 258-40 chr9 132977570 132978024 + 1.5 NA promoter-TSS (NM_001135031) promoter-TSS (NM_001135031) -897 NM_001135031 8328 Hs.553160 NM_004188 ENSG00000165702 GFI1B BDPLT17|ZNF163B growth factor independent 1B transcriptional repressor protein-coding 329.5-9 chr18 1592068 1592340 + 1.5 NA Intergenic L1MC|LINE|L1 -232575 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 288.667-13 chr2 240022285 240022721 + 1.5 NA intron (NR_136155, intron 1 of 8) L2a|LINE|L2 2839 NM_004544 4705 Hs.277677 NM_004544 ENSG00000130414 NDUFA10 CI-42KD|CI-42k|MC1DN22 NADH:ubiquinone oxidoreductase subunit A10 protein-coding 269.333-24 chr8 24194563 24194883 + 1.5 NA Intergenic Intergenic -99317 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 370.5-14 chr8 91291033 91291360 + 1.5 NA intron (NM_134266, intron 3 of 18) MIRb|SINE|MIR 41877 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 311.333-3 chr10 12610882 12611101 + 1.5 NA intron (NM_001351032, intron 4 of 11) MIR|SINE|MIR 32238 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 183.667-33 chr20 48379741 48379959 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 19939 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 329-5 chr19 6354213 6354619 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -7115 NM_006012 8192 Hs.515092 NM_006012 ENSG00000125656 CLPP DFNB81|PRLTS3 caseinolytic mitochondrial matrix peptidase proteolytic subunit protein-coding 249.667-12 chr15 61613643 61614021 + 1.5 NA Intergenic L1MB1|LINE|L1 -116086 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 327.5-15 chr20 4807394 4807626 + 1.5 NA intron (NM_014737, intron 2 of 11) L1ME4b|LINE|L1 7613 NM_170774 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 452.166-3 chr14 54555619 54556492 + 1.5 NA Intergenic L3|LINE|CR1 -11557 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 270.667-15 chr3 152466827 152467100 + 1.5 NA Intergenic Intergenic -125973 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 172-52 chr8 121708663 121708865 + 1.5 NA Intergenic Intergenic -67324 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 255.166-3 chr3 175281451 175281804 + 1.5 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) -10531 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 269.333-20 chr5 42176977 42177392 + 1.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -1839 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 202-14 chr18 76253730 76254015 + 1.5 NA Intergenic Intergenic 44362 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 462.334-4 chr3 70530839 70531186 + 1.5 NA Intergenic Intergenic -218374 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 315-4 chr14 60624974 60625230 + 1.5 NA Intergenic Intergenic -14114 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 211.667-37 chr6 37860267 37860569 + 1.5 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 40691 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 317.5-13 chr3 113135778 113136286 + 1.5 NA Intergenic Intergenic 31699 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 275-11 chr18 2260262 2260623 + 1.5 NA Intergenic Intergenic 311063 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 237.5-35 chr6 52224596 52224764 + 1.5 NA Intergenic Intergenic 19820 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 263.833-12 chr8 95134757 95135056 + 1.5 NA intron (NM_024613, intron 1 of 1) intron (NM_024613, intron 1 of 1) 1121 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 442.667-3 chr14 57725515 57725998 + 1.5 NA intron (NR_159373, intron 1 of 10) HERVL-int|LTR|ERVL 139243 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 380.334-5 chr2 74708197 74708808 + 1.5 NA Intergenic L1MDa|LINE|L1 54255 NM_001271661 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 195-10 chr12 118632996 118633204 + 1.5 NA Intergenic Intergenic 128579 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 384.5-9 chr5 100264578 100264996 + 1.5 NA Intergenic Intergenic 123467 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 279.833-16 chr6 132764127 132764579 + 1.5 NA promoter-TSS (NM_078488) promoter-TSS (NM_078488) -894 NM_078488 8875 Hs.293130 NM_004665 ENSG00000112303 VNN2 FOAP-4|GPI-80 vanin 2 protein-coding 292.5-18 chr7 22329594 22329907 + 1.5 NA intron (NM_012294, intron 1 of 25) LTR18B|LTR|ERVL 27404 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 269.5-18 chr4 78953856 78954284 + 1.5 NA Intergenic Intergenic -14632 NR_146465 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 249-21 chr22 27367136 27367360 + 1.5 NA Intergenic Intergenic 56597 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 373.667-2 chr12 14718888 14719415 + 1.5 NA Intergenic L1M5|LINE|L1 -22552 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 307-4 chr10 86485804 86486275 + 1.5 NA intron (NM_001318328, intron 4 of 18) intron (NM_001318328, intron 4 of 18) 35745 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 261.167-23 chrX 130740506 130740742 + 1.5 NA intron (NM_182314, intron 3 of 15) intron (NM_182314, intron 3 of 15) -62012 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 294.166-5 chr3 37388833 37389041 + 1.5 NA intron (NM_178344, intron 1 of 3) L1MB8|LINE|L1 2668 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 279-29 chr6 141997876 141998215 + 1.5 NA Intergenic L1M2|LINE|L1 90754 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 274-27 chr5 144141401 144141607 + 1.5 NA Intergenic Intergenic 29155 NM_001024947 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 254-11 chr14 70141648 70141942 + 1.5 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -45313 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 303.5-10 chr6 67197976 67198363 + 1.5 NA Intergenic L1MCa|LINE|L1 -857182 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 249.167-10 chr19 1490439 1490752 + 1.5 NA promoter-TSS (NM_138393) promoter-TSS (NM_138393) -145 NM_017573 54760 Hs.46884 NM_017573 ENSG00000115257 PCSK4 PC4|SPC5 proprotein convertase subtilisin/kexin type 4 protein-coding 416.167-4 chr9 110182777 110183437 + 1.5 NA Intergenic Intergenic 25026 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 253.333-3 chr10 118568448 118568691 + 1.5 NA Intergenic Intergenic 27079 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 307.333-13 chr5 138153325 138153567 + 1.5 NA intron (NM_139199, intron 20 of 26) intron (NM_139199, intron 20 of 26) -14018 NM_003551 8382 Hs.730856 NM_003551 ENSG00000112981 NME5 NM23-H5|NM23H5|RSPH23 NME/NM23 family member 5 protein-coding 266.5-32 chrX 153041906 153042154 + 1.5 NA Intergenic L2|LINE|L2 -14440 NM_013364 29944 Hs.449627 NM_013364 ENSG00000183837 PNMA3 MA3|MA5 PNMA family member 3 protein-coding 505.5-3 chr18 64017625 64018041 + 1.5 NA intron (NM_001348367, intron 7 of 7) intron (NM_001348367, intron 7 of 7) 47752 NM_001348368 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 C18orf53|CAP2|PI-8|PI8|PSS5 serpin family B member 8 protein-coding 199-26 chr2 182240327 182240464 + 1.5 NA intron (NM_005019, intron 2 of 14) intron (NM_005019, intron 2 of 14) 1668 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 376.333-4 chr11 97848700 97849164 + 1.5 NA Intergenic Intergenic -1172017 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 305.833-15 chr9 26418316 26418686 + 1.5 NA Intergenic Intergenic 351826 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 388-3 chr12 59707643 59708185 + 1.5 NA intron (NM_001270623, intron 3 of 5) intron (NM_001270623, intron 3 of 5) 18544 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 282.5-8 chr20 9675750 9676152 + 1.5 NA intron (NM_020341, intron 3 of 10) intron (NM_020341, intron 3 of 10) -160953 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 427.167-3 chr10 19305933 19306284 + 1.5 NA intron (NM_001142308, intron 21 of 39) (TA)n|Simple_repeat|Simple_repeat 257307 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 241.834-9 chr3 158526540 158526746 + 1.5 NA promoter-TSS (NR_148407) promoter-TSS (NR_148407) -65 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 228.666-5 chr2 9555757 9555999 + 1.5 NA promoter-TSS (NM_003183) promoter-TSS (NM_003183) -48 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 417.833 chr1 95994849 95995276 + 1.5 NA intron (NR_125991, intron 2 of 4) intron (NR_125991, intron 2 of 4) 2994 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 317.667-4 chr14 70525835 70526137 + 1.5 NA intron (NM_003814, intron 1 of 1) intron (NM_003814, intron 1 of 1) 9018 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 177.833-31 chr5 145390006 145390178 + 1.5 NA Intergenic L2c|LINE|L2 445250 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 322-9 chr3 152229867 152230239 + 1.5 NA Intergenic MLT1E3|LTR|ERVL-MaLR -24624 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 412.667-4 chr18 53674093 53674426 + 1.5 NA Intergenic MIR1_Amn|SINE|MIR -93200 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 293.5-19 chr5 155961638 155962014 + 1.5 NA Intergenic Intergenic -364931 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 358.667-6 chr2 188342981 188343284 + 1.5 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 45640 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 245-36 chr8 85203083 85203246 + 1.5 NA exon (NM_001951, exon 3 of 8) exon (NM_001951, exon 3 of 8) 15499 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 296.167-7 chr14 106882897 106883290 + 1.5 NA Intergenic L1MC3|LINE|L1 -32094 NR_049827 100847062 NR_049827 ENSG00000265929 MIR5195 - microRNA 5195 ncRNA 274-40 chr9 26852780 26853006 + 1.5 NA intron (NM_001167575, intron 5 of 5) L2a|LINE|L2 39909 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 234.167-24 chr6 83614383 83614561 + 1.5 NA intron (NM_001242794, intron 9 of 19) intron (NM_001242794, intron 9 of 19) 94087 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 201.333-27 chr2 204731820 204732223 + 1.5 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 186546 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 169-50 chr9 137551397 137551604 + 1.5 NA promoter-TSS (NM_032477) promoter-TSS (NM_032477) -379 NM_032477 64975 Hs.44017 NM_032477 ENSG00000182154 MRPL41 BMRP|MRP-L27|MRPL27|PIG3|RPML27 mitochondrial ribosomal protein L41 protein-coding 329.167-2 chr1 111756805 111757058 + 1.5 NA intron (NM_007204, intron 2 of 10) intron (NM_007204, intron 2 of 10) 1030 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 221.333-31 chr8 136724399 136724594 + 1.5 NA intron (NR_147196, intron 2 of 5) L1PA4|LINE|L1 193698 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 359-2 chr10 52063663 52064032 + 1.5 NA intron (NM_001098512, intron 7 of 17) MER52A|LTR|ERV1 250281 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 326.5-7 chr17 50169433 50169666 + 1.5 NA intron (NR_135553, intron 6 of 8) intron (NR_135553, intron 6 of 8) 2927 NR_024192 373861 Hs.25934 NM_194072 HILS1 H1.9 histone linker H1 domain, spermatid-specific 1 (pseudogene) pseudo 345-28 chr8 88322125 88322440 + 1.5 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 5201 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 312.834 chr12 22184125 22184663 + 1.5 NA Intergenic L1MC1|LINE|L1 138176 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 417.5 chr1 30168623 30168995 + 1.5 NA Intergenic L1ME1|LINE|L1 -131197 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 319-12 chr4 85879401 85879720 + 1.5 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -50456 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 545.334 chr10 69446754 69447228 + 1.5 NA Intergenic LTR82A|LTR|ERVL -4474 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 313-10 chr6 16277492 16277822 + 1.5 NA intron (NM_006877, intron 5 of 8) L2b|LINE|L2 39070 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 165.834-10 chr8 137642436 137642679 + 1.5 NA Intergenic Intergenic -228969 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 218.834 chr11 90700045 90700307 + 1.5 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -144319 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 173-41 chr8 125758013 125758164 + 1.5 NA Intergenic Intergenic 193109 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 225.667-22 chr2 136006379 136006621 + 1.5 NA intron (NR_110199, intron 3 of 3) L1ME2z|LINE|L1 -20816 NM_001293312 1615 Hs.503787 NM_001349 ENSG00000115866 DARS HBSL|aspRS aspartyl-tRNA synthetase protein-coding 256.667-6 chr11 57668899 57669140 + 1.5 NA intron (NM_015457, intron 1 of 11) intron (NM_015457, intron 1 of 11) 905 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 244.334-4 chr11 36529615 36529790 + 1.5 NA Intergenic L1PA6|LINE|L1 -19430 NM_004620 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 443.667-2 chr10 115609177 115609549 + 1.5 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 515998 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 191.5-8 chr10 54795310 54795730 + 1.5 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 5711 NM_033056 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 315-8 chr2 128213842 128214101 + 1.5 NA Intergenic HAL1|LINE|L1 104897 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 445.5-4 chr2 96623156 96623515 + 1.5 NA intron (NR_047654, intron 3 of 20) intron (NR_047654, intron 3 of 20) 14656 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 462.5-5 chr20 41173074 41173805 + 1.5 NA exon (NM_002660, exon 28 of 32) exon (NM_002660, exon 28 of 32) 4416 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 430.168 chrX 100635296 100635833 + 1.5 NA exon (NM_003270, exon 2 of 8) exon (NM_003270, exon 2 of 8) 1242 NM_003270 7105 Hs.43233 NM_003270 ENSG00000000003 TSPAN6 T245|TM4SF6|TSPAN-6 tetraspanin 6 protein-coding 183-40 chr6 107958155 107958373 + 1.5 NA promoter-TSS (NM_007214) promoter-TSS (NM_007214) -56 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 269.334-8 chr4 30854708 30854970 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 134470 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 263.333-2 chr10 109483656 109483938 + 1.5 NA Intergenic Intergenic 439449 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 303-7 chr14 19933513 19933988 + 1.5 NA Intergenic AluSx3|SINE|Alu -1858 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 295.5-10 chr3 103216313 103216801 + 1.5 NA Intergenic L2a|LINE|L2 307559 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 309.333-8 chr14 20961585 20961827 + 1.5 NA Intergenic L1MA2|LINE|L1 6219 NM_002934 6036 Hs.728 NM_002934 ENSG00000169385 RNASE2 EDN|RAF3|RNS2 ribonuclease A family member 2 protein-coding 188-36 chr3 182212660 182212931 + 1.5 NA Intergenic Intergenic 260431 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 218.167-14 chr2 55175762 55176020 + 1.5 NA exon (NM_001353785, exon 8 of 8) exon (NM_001353785, exon 8 of 8) -38060 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 271.5-2 chr1 16615856 16616068 + 1.5 NA Intergenic L1ME2z|LINE|L1 -2357 NM_017940 55672 Hs.467587 NM_017940 ENSG00000219481 NBPF1 AB13|AB14|AB23|AD2|NBG|NBPF NBPF member 1 protein-coding 218.333-33 chr9 30251944 30252157 + 1.5 NA Intergenic Intergenic 156404 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 476.834-2 chr12 26762202 26762764 + 1.5 NA intron (NM_002223, intron 2 of 56) L1M2|LINE|L1 70711 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 217.5-8 chr16 17714775 17715050 + 1.5 NA Intergenic Intergenic -243952 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 229.833-12 chr18 76419731 76420058 + 1.5 NA intron (NM_014643, intron 3 of 6) intron (NM_014643, intron 3 of 6) -71758 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 313.333-12 chr3 122659493 122659879 + 1.5 NA Intergenic Intergenic -21153 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 381.167-7 chr4 34408759 34409424 + 1.5 NA Intergenic L1PA14|LINE|L1 -139344 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 237.166-6 chr4 60485172 60485501 + 1.5 NA Intergenic LTR78|LTR|ERV1 -437283 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 214.5-10 chr13 102812485 102812789 + 1.5 NA intron (NM_017693, intron 3 of 10) L1M4c|LINE|L1 5491 NM_001204425 100533467 Hs.258429 NM_001204425 ENSG00000134899 BIVM-ERCC5 ERCC5-202 BIVM-ERCC5 readthrough protein-coding 454.5-6 chr5 36873356 36873940 + 1.5 NA non-coding (NR_046262, exon 1 of 1) non-coding (NR_046262, exon 1 of 1) 3046 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 218-15 chr14 20342019 20342218 + 1.5 NA TTS (NR_002312) TTS (NR_002312) 1293 NR_002312 85495 Hs.613102 NR_002312 ENSG00000277209 RPPH1 H1RNA|RPPH1-1 ribonuclease P RNA component H1 ncRNA 209.833-6 chr10 62531692 62531862 + 1.5 NA intron (NM_199452, intron 1 of 6) L1ME1|LINE|L1 11329 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 283.5-14 chr5 156816805 156817151 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -33317 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 223.334-7 chr6 54559323 54559548 + 1.5 NA Intergenic Intergenic 250994 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 291.5-26 chr4 147589612 147589881 + 1.5 NA Intergenic Intergenic -27651 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 360.167 chr12 13533591 13534037 + 1.5 NA Intergenic L2a|LINE|L2 -157069 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 362.5-9 chr3 46866506 46866955 + 1.5 NA Intergenic Intergenic -3247 NM_000258 4634 Hs.517939 NM_000258 ENSG00000160808 MYL3 CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl myosin light chain 3 protein-coding 198.333-12 chr11 40903436 40903687 + 1.5 NA intron (NM_020929, intron 1 of 4) Tigger1|DNA|TcMar-Tigger 556075 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 203.333-30 chr2 39341295 39341534 + 1.5 NA intron (NM_003618, intron 4 of 33) AluSx4|SINE|Alu 95871 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 407.5-12 chr5 143913585 143914039 + 1.5 NA Intergenic Intergenic 101651 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 298.833-3 chr10 61117523 61117967 + 1.5 NA Intergenic Intergenic 101470 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 380-8 chr14 52107980 52108631 + 1.5 NA Intergenic Intergenic -39246 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 298.5-17 chr3 179306106 179306478 + 1.5 NA Intergenic L1MEi|LINE|L1 -16739 NM_001303426 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 282.833-8 chr17 31941132 31941688 + 1.5 NA intron (NM_001321207, intron 3 of 14) AluSq10|SINE|Alu 4403 NM_001321207 23512 Hs.462732 NM_015355 ENSG00000178691 SUZ12 CHET9|JJAZ1 SUZ12 polycomb repressive complex 2 subunit protein-coding 257.5-30 chr7 118843093 118843471 + 1.5 NA Intergenic L1MA8|LINE|L1 618578 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 476.334-2 chr10 84430037 84430538 + 1.5 NA intron (NM_018999, intron 5 of 10) L1M4|LINE|L1 5118 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 215.167-18 chr20 11716182 11716439 + 1.5 NA Intergenic LTR16A1|LTR|ERVL 154405 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 257.166-6 chr8 81633060 81633313 + 1.5 NA Intergenic MamGypLTR3a|LTR|Gypsy -1909 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 315.167-4 chr11 92244091 92244307 + 1.5 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) 19165 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 368.5-11 chr4 95266803 95267199 + 1.5 NA intron (NM_003728, intron 4 of 15) intron (NM_003728, intron 4 of 15) 175510 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 248.833-13 chr2 82709249 82709512 + 1.5 NA Intergenic Intergenic -147423 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 259-28 chr3 181380890 181381151 + 1.5 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 61466 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 170-24 chr17 42850239 42850433 + 1.5 NA promoter-TSS (NM_001277731) promoter-TSS (NM_001277731) -848 NM_001277731 8639 Hs.198241 NM_003734 ENSG00000131471 AOC3 HPAO|SSAO|VAP-1|VAP1 amine oxidase copper containing 3 protein-coding 295.5-7 chr2 55168730 55169144 + 1.5 NA Intergenic Intergenic -31106 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 241.834-3 chr11 47789281 47789559 + 1.5 NA intron (NM_015231, intron 29 of 35) intron (NM_015231, intron 29 of 35) -22079 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 173.5-4 chr1 193407323 193407445 + 1.5 NA Intergenic Intergenic 102639 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 344.167 chr1 245037290 245037703 + 1.5 NA intron (NM_032328, intron 3 of 7) L1M5|LINE|L1 -66627 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 296.334-8 chr2 212249396 212249858 + 1.5 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 176733 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 378.666-7 chr8 143976879 143977480 + 1.5 NA promoter-TSS (NM_000445) promoter-TSS (NM_000445) -434 NM_000445 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 278.167-15 chr2 55077314 55077641 + 1.5 NA intron (NM_001321904, intron 2 of 9) L1PB1|LINE|L1 -26205 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 275.5-5 chr10 70164659 70164998 + 1.5 NA intron (NM_001142648, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 5686 NM_020150 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 299-20 chr7 25039672 25039941 + 1.5 NA Intergenic L1MC4a|LINE|L1 -59628 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 271-12 chr18 9323673 9323857 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -11008 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 423.833-2 chr10 88880431 88880951 + 1.5 NA intron (NM_020799, intron 1 of 10) CpG 446 NM_020799 57559 Hs.16229 NM_020799 ENSG00000138134 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein like 1 protein-coding 219.833-8 chr13 60380920 60381204 + 1.5 NA Intergenic L2|LINE|L2 -15395 NM_030794 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 326.833-8 chr14 34228173 34228452 + 1.5 NA Intergenic Intergenic 233928 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 188.834-14 chr8 79619175 79619324 + 1.5 NA intron (NM_007029, intron 1 of 4) intron (NM_007029, intron 1 of 4) 8132 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 358-17 chr8 86528846 86529250 + 1.5 NA exon (NM_003909, exon 4 of 17) exon (NM_003909, exon 4 of 17) 14613 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 446-4 chr14 51431810 51432348 + 1.5 NA Intergenic Intergenic -34944 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 177.5-22 chr16 54930674 54930836 + 1.5 NA promoter-TSS (NM_001252197) promoter-TSS (NM_001252197) -110 NM_005853 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 225.5-22 chr5 170693709 170693975 + 1.5 NA intron (NM_001278340, intron 2 of 8) intron (NM_001278340, intron 2 of 8) -12372 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 263-17 chr8 122333671 122333916 + 1.5 NA Intergenic MIRb|SINE|MIR 234851 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 359.5-11 chr8 105882620 105883073 + 1.5 NA intron (NR_125796, intron 2 of 7) (AT)n|Simple_repeat|Simple_repeat 177657 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 650.834-2 chr3 73847932 73848990 + 1.5 NA intron (NR_146637, intron 2 of 3) intron (NR_146637, intron 2 of 3) 39217 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 279.667-14 chr20 9952033 9952230 + 1.5 NA Intergenic Intergenic -34202 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 281.5-20 chr6 55985609 55985908 + 1.5 NA Intergenic Intergenic 105904 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 463.333-2 chr11 111863371 111863878 + 1.5 NA intron (NR_147984, intron 4 of 15) intron (NR_147984, intron 4 of 15) 7657 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 279.833-18 chr7 4444836 4445127 + 1.5 NA Intergenic L2a|LINE|L2 -237314 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 243.667-34 chr4 64046864 64047121 + 1.5 NA Intergenic L1M3|LINE|L1 362458 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 230.667-10 chr15 59662959 59663321 + 1.5 NA 3' UTR (NM_001368061, exon 8 of 8) 3' UTR (NM_001368061, exon 8 of 8) -5625 NM_004492 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 178.667-40 chr6 160443227 160443447 + 1.5 NA intron (NM_021977, intron 8 of 10) MamRTE1|LINE|RTE-BovB 67787 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 281.833-4 chr13 20182187 20182432 + 1.5 NA Intergenic Intergenic 10629 NM_004004 2706 Hs.524894 NM_004004 ENSG00000165474 GJB2 CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK gap junction protein beta 2 protein-coding 192.333-33 chr3 40694023 40694368 + 1.5 NA Intergenic Intergenic 169235 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 237.833-2 chr12 107703415 107703693 + 1.5 NA intron (NM_007062, intron 9 of 14) intron (NM_007062, intron 9 of 14) 17512 NM_001317962 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 341.333-12 chr7 25201169 25201578 + 1.5 NA Intergenic AluJb|SINE|Alu -21019 NM_001371352 284-18 chr2 210462729 210462959 + 1.5 NA intron (NR_110604, intron 4 of 5) intron (NR_110604, intron 4 of 5) 13861 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 201.5-2 chr1 233587804 233588000 + 1.5 NA Intergenic L2a|LINE|L2 -26204 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 192.5-8 chr11 728164 728454 + 1.5 NA TTS (NM_022772) TTS (NM_022772) -19155 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 266.5-30 chr9 112717893 112718210 + 1.5 NA promoter-TSS (NM_021218) promoter-TSS (NM_021218) 66 NM_021218 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 395.333-6 chr2 191758576 191759129 + 1.5 NA Intergenic Intergenic -33988 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 237.167 chr1 234724645 234724901 + 1.5 NA intron (NR_038856, intron 1 of 2) intron (NR_038856, intron 1 of 2) 731 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 232-23 chr2 135338725 135338950 + 1.5 NA intron (NM_001286569, intron 6 of 21) intron (NM_001286569, intron 6 of 21) 191748 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 228.5-13 chr19 39647068 39647238 + 1.5 NA Intergenic L1PREC2|LINE|L1 8468 NR_026870 100129935 Hs.659307 NR_026870 ENSG00000268153 LOC100129935 - galectin 14 pseudogene pseudo 191.333-33 chr4 6865900 6866032 + 1.5 NA intron (NM_001100590, intron 6 of 8) intron (NM_001100590, intron 6 of 8) -43478 NM_001113361 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 205.167-25 chr4 150812044 150812238 + 1.5 NA intron (NM_001367550, intron 31 of 56) intron (NM_001367550, intron 31 of 56) 203126 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 231-25 chr4 76122578 76122781 + 1.5 NA intron (NR_103781, intron 7 of 9) L1MB8|LINE|L1 25718 NM_017426 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 271.5-20 chr20 7053687 7053979 + 1.5 NA Intergenic L1ME3A|LINE|L1 200369 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 181.5-31 chr3 187156869 187157035 + 1.5 NA Intergenic Intergenic -17456 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 315-7 chr19 28706546 28706863 + 1.5 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 20990 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 435.833-2 chr13 102457238 102457570 + 1.5 NA Intergenic Intergenic -54961 NM_001321948 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 262-24 chr6 49848936 49849191 + 1.5 NA intron (NM_170609, intron 3 of 6) intron (NM_170609, intron 3 of 6) 17472 NM_001131 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 397-13 chr3 149512329 149512695 + 1.5 NA Intergenic Intergenic 37815 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 340-21 chr9 122812352 122812627 + 1.5 NA Intergenic AluJo|SINE|Alu 12366 NM_080859 392392 Hs.632681 NM_080859 ENSG00000165204 OR1K1 hg99 olfactory receptor family 1 subfamily K member 1 protein-coding 216-9 chr12 23863150 23863340 + 1.5 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 86425 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 411.834-2 chr20 19814710 19815220 + 1.5 NA Intergenic Intergenic -71556 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 268.833-9 chr17 79073636 79073951 + 1.5 NA Intergenic Intergenic -1144 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 214.5-16 chr17 73215784 73216094 + 1.5 NA intron (NM_001098832, intron 2 of 3) intron (NM_001098832, intron 2 of 3) 11778 NM_001289412 84923 Hs.741276 NM_032837 ENSG00000133193 FAM104A - family with sequence similarity 104 member A protein-coding 327-17 chr7 81263794 81264197 + 1.5 NA Intergenic L1MC1|LINE|L1 297824 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 224.334-6 chr22 26719097 26719504 + 1.5 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 46457 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 181.5-37 chr5 61433857 61434102 + 1.5 NA intron (NM_020928, intron 1 of 13) (AT)n|Simple_repeat|Simple_repeat 101721 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 279-23 chr22 28486218 28486519 + 1.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 26499 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 316-4 chr14 36073482 36073805 + 1.5 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 3216 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 272.667-21 chr5 108415133 108415323 + 1.5 NA Intergenic MER65A|LTR|ERV1 -33130 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 287.5-23 chr9 117073746 117073970 + 1.5 NA intron (NM_014010, intron 4 of 21) intron (NM_014010, intron 4 of 21) 107343 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 314-7 chr15 83197031 83197351 + 1.5 NA intron (NM_016073, intron 1 of 5) intron (NM_016073, intron 1 of 5) 10632 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 344.5-3 chr10 97034335 97034632 + 1.5 NA exon (NM_003061, exon 23 of 37) exon (NM_003061, exon 23 of 37) -68273 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 251.666-4 chr2 78632516 78632798 + 1.5 NA Intergenic Intergenic 87126 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 193.5-40 chr5 58179389 58179593 + 1.5 NA Intergenic Intergenic -57150 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 429-3 chr13 96817566 96817953 + 1.5 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 166413 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 272.167-2 chr11 17986940 17987224 + 1.5 NA intron (NR_104040, intron 8 of 11) intron (NR_104040, intron 8 of 11) 25965 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 385.333-11 chrX 94748779 94749201 + 1.5 NA Intergenic L1PREC2|LINE|L1 314236 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 201.833-9 chr17 74780961 74781286 + 1.5 NA intron (NM_017728, intron 2 of 9) MER20|DNA|hAT-Charlie 4624 NM_017728 54868 Hs.370262 NM_017728 ENSG00000109066 TMEM104 - transmembrane protein 104 protein-coding 216.333-4 chr1 167838333 167838560 + 1.5 NA intron (NM_018417, intron 21 of 32) L2a|LINE|L2 75688 NM_001297772 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 391.833-7 chr3 89889332 89889881 + 1.5 NA Intergenic Intergenic 781985 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 209.167-29 chr8 94396211 94396484 + 1.5 NA intron (NM_012415, intron 8 of 14) intron (NM_012415, intron 8 of 14) 40597 NM_001205263 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B protein-coding 191.5-47 chr7 57203489 57203696 + 1.5 NA Intergenic CpG 18582 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 290.5-2 chr1 211998162 211998450 + 1.5 NA intron (NM_015434, intron 7 of 19) L1ME1|LINE|L1 -37247 NM_001286229 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 188.833-17 chr2 15556998 15557385 + 1.5 NA intron (NR_052013, intron 2 of 50) intron (NR_052013, intron 2 of 50) 4143 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 568.499-3 chr8 119086294 119086870 + 1.5 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -17800 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 282.167-14 chr6 154745513 154745933 + 1.5 NA intron (NM_001286189, intron 3 of 21) L1MC4|LINE|L1 12345 NM_001286188 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 290.167-14 chr5 65531884 65532243 + 1.5 NA intron (NM_001349369, intron 6 of 10) L1MEc|LINE|L1 31105 NM_001349369 64105 Hs.529778 NM_022145 ENSG00000123219 CENPK AF5alpha|CENP-K|FKSG14|P33|Solt centromere protein K protein-coding 655-2 chr7 16891162 16891939 + 1.5 NA Intergenic Intergenic -9567 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 260.833-7 chr20 44911342 44911798 + 1.5 NA intron (NM_001124756, intron 1 of 14) intron (NM_001124756, intron 1 of 14) 1510 NR_134983 80336 Hs.641481 NM_001124756 ENSG00000101104 PABPC1L C20orf119|EPAB|PABPC1L1|dJ1069P2.3 poly(A) binding protein cytoplasmic 1 like protein-coding 311.333-19 chr5 174289468 174289770 + 1.5 NA Intergenic L1M3|LINE|L1 -46735 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 223.5-14 chr2 46616971 46617164 + 1.5 NA promoter-TSS (NM_014171) promoter-TSS (NM_014171) -26 NM_173074 5281 Hs.468415 NM_002643 ENSG00000151665 PIGF - phosphatidylinositol glycan anchor biosynthesis class F protein-coding 387-19 chr6 122254760 122255230 + 1.5 NA Intergenic L1M3|LINE|L1 -144556 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 322-14 chr8 141730959 141731249 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 55209 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 218.5-34 chrX 43750531 43750829 + 1.5 NA Intergenic Intergenic 95773 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 260.667-23 chr19 45187680 45187973 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger 9081 NM_212550 388552 Hs.103902 NM_212550 ENSG00000189114 BLOC1S3 BLOS3|HPS8|RP biogenesis of lysosomal organelles complex 1 subunit 3 protein-coding 179.833-26 chr5 93879056 93879388 + 1.5 NA intron (NM_032042, intron 7 of 10) intron (NM_032042, intron 7 of 10) -137622 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 266.333-5 chr11 18012953 18013510 + 1.5 NA promoter-TSS (NR_104041) promoter-TSS (NR_104041) -69 NR_104041 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 284-22 chr4 89914430 89914794 + 1.5 NA intron (NM_001371403, intron 4 of 8) intron (NM_001371403, intron 4 of 8) 19758 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 244.667-19 chr22 36368452 36368772 + 1.5 NA intron (NM_002473, intron 1 of 40) intron (NM_002473, intron 1 of 40) 19455 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 275-23 chr5 54093222 54093800 + 1.5 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -141912 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 286.334-3 chr2 19417932 19418239 + 1.5 NA Intergenic MIRc|SINE|MIR -59462 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 312.5-12 chr20 54187833 54188098 + 1.5 NA Intergenic Intergenic -13979 NM_001128915 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 350.5-5 chr19 29167506 29167813 + 1.5 NA Intergenic L1ME2|LINE|L1 45492 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 453.167 chr17 29779207 29779652 + 1.5 NA intron (NM_033389, intron 2 of 14) intron (NM_033389, intron 2 of 14) -17997 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 238.334-17 chr5 104387059 104387429 + 1.5 NA Intergenic Intergenic -712230 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 297-2 chr1 45991151 45991424 + 1.5 NA intron (NM_001324320, intron 5 of 29) L1MC3|LINE|L1 126939 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 243.5-30 chr6 170179431 170179621 + 1.5 NA Intergenic Intergenic 18884 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 339.667-10 chr16 75764298 75764781 + 1.5 NA Intergenic Intergenic -38049 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 264.167-2 chr1 115764316 115764562 + 1.5 NA intron (NM_001232, intron 1 of 10) L1ME4a|LINE|L1 4366 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 243-15 chr4 31758350 31758529 + 1.5 NA Intergenic L2a|LINE|L2 -238940 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 302.167-12 chr3 51682229 51682522 + 1.5 NA intron (NM_001243727, intron 2 of 3) intron (NM_001243727, intron 2 of 3) 10748 NR_103463 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264, ER-phagy receptor protein-coding 224.5-10 chr14 78143540 78143836 + 1.5 NA Intergenic Intergenic -26685 NR_158975 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 216.667-48 chr8 53209131 53209330 + 1.5 NA Intergenic L1MC3|LINE|L1 42407 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 319.5-10 chr22 39995756 39996124 + 1.5 NA intron (NM_138435, intron 1 of 4) intron (NM_138435, intron 1 of 4) 986 NM_138435 113828 Hs.26192 NM_138435 ENSG00000133477 FAM83F - family with sequence similarity 83 member F protein-coding 237.333-13 chr14 19925513 19925824 + 1.5 NA Intergenic Intergenic 5061 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 276-12 chr17 63355494 63355866 + 1.5 NA intron (NM_025185, intron 13 of 25) intron (NM_025185, intron 13 of 25) 84587 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 203.833-25 chr8 134276135 134276501 + 1.5 NA Intergenic L2c|LINE|L2 -321753 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 350-11 chr2 49473454 49473847 + 1.5 NA Intergenic L1M7|LINE|L1 -319123 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 294.5-9 chr14 57111302 57111607 + 1.5 NA Intergenic Intergenic 157451 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 223.166-2 chr11 26342874 26343117 + 1.5 NA intron (NM_031418, intron 1 of 26) L1MA9|LINE|L1 10865 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 386.333 chr11 32859987 32860289 + 1.5 NA Intergenic Intergenic 30211 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 406.167-8 chr18 10271101 10271699 + 1.5 NA Intergenic L2c|LINE|L2 142970 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 190.5-55 chr8 104074893 104075144 + 1.5 NA intron (NR_145711, intron 17 of 21) intron (NR_145711, intron 17 of 21) -148317 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 184 chr1 151201110 151201332 + 1.5 NA intron (NM_001135637, intron 1 of 13) intron (NM_001135637, intron 1 of 13) 2669 NM_001135637 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 171.5-10 chr11 43383768 43383932 + 1.5 NA intron (NM_001307943, intron 2 of 19) intron (NM_001307943, intron 2 of 19) 24930 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 321.167-8 chr18 2966862 2967192 + 1.5 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) -20404 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 296-6 chr17 9395684 9395963 + 1.5 NA intron (NM_004853, intron 6 of 7) Charlie29a|DNA|hAT-Charlie 179997 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 271.667-6 chr11 73103460 73103655 + 1.5 NA intron (NM_014824, intron 2 of 19) L2c|LINE|L2 38761 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 164-54 chr8 107104598 107104779 + 1.5 NA Intergenic MamRTE1|LINE|RTE-BovB 231827 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 246.5-23 chr3 193940660 193940947 + 1.5 NA Intergenic Intergenic 53435 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 258.833-17 chr8 54727503 54727727 + 1.5 NA Intergenic Intergenic 111519 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 259.333-7 chr11 9417756 9418106 + 1.5 NA intron (NM_006391, intron 6 of 24) AluSq|SINE|Alu -10835 NR_002962 677808 Hs.689720 NR_002962 ENSG00000201998 SNORA23 ACA23 small nucleolar RNA, H/ACA box 23 snoRNA 335-8 chr2 49509154 49509626 + 1.5 NA Intergenic AluSx3|SINE|Alu -354863 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 220-11 chr16 62622672 62622903 + 1.5 NA Intergenic Intergenic -586349 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 226.166-3 chr18 21275450 21275858 + 1.5 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 33412 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 368.501 chr2 30238102 30238628 + 1.5 NA intron (NM_030915, intron 2 of 2) intron (NM_030915, intron 2 of 2) 6831 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 232-26 chr20 6578114 6578290 + 1.5 NA Intergenic L1ME3A|LINE|L1 151470 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 248-5 chr10 14198057 14198331 + 1.5 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 123910 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 243.167-2 chr10 70228642 70228969 + 1.5 NA intron (NM_021129, intron 2 of 10) intron (NM_021129, intron 2 of 10) 4624 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 265.5-12 chr17 73922288 73922548 + 1.5 NA Intergenic L1MEd|LINE|L1 -93881 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 325.333-10 chr3 100558508 100558895 + 1.5 NA intron (NM_001363876, intron 5 of 6) intron (NM_001363876, intron 5 of 6) -50900 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 300.5-14 chr2 127768176 127768448 + 1.5 NA intron (NM_001006622, intron 3 of 5) intron (NM_001006622, intron 3 of 5) 42859 NM_018383 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 223.667-49 chr9 4617508 4617737 + 1.5 NA intron (NR_148444, intron 12 of 16) L1ME4a|LINE|L1 44601 NR_148448 55064 Hs.179615 NM_017985 ENSG00000106686 SPATA6L C9orf68|bA6J24.2 spermatogenesis associated 6 like protein-coding 278.667-19 chr21 31193175 31193454 + 1.5 NA intron (NM_001353686, intron 13 of 27) MER68|LTR|ERVL -32374 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 284.666-7 chr4 8403372 8403607 + 1.5 NA intron (NM_003501, intron 7 of 17) intron (NM_003501, intron 7 of 17) 37234 NM_003501 8310 Hs.479122 NM_003501 ENSG00000087008 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 380.5-7 chr19 49132480 49132876 + 1.5 NA intron (NR_103842, intron 7 of 28) intron (NR_103842, intron 7 of 28) 13134 NM_003660 8541 Hs.413748 NM_003660 ENSG00000177380 PPFIA3 LPNA3 PTPRF interacting protein alpha 3 protein-coding 436.334-3 chr20 20016994 20017604 + 1.5 NA promoter-TSS (NM_181528) promoter-TSS (NM_181528) 9 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 358.833-10 chr5 156252657 156252971 + 1.5 NA Intergenic Charlie16a|DNA|hAT-Charlie -73943 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 187-29 chr3 148962721 148963082 + 1.5 NA Intergenic Intergenic -28507 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 188.5-54 chr8 130194974 130195192 + 1.5 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 101450 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 258-35 chr8 50619121 50619487 + 1.5 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 455173 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 381.667-3 chr11 63096377 63096929 + 1.5 NA intron (NM_001136506, intron 5 of 9) L1P3|LINE|L1 47568 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 735.999 chr20 23235238 23236231 + 1.5 NA Intergenic Intergenic -103098 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 331.333-6 chr3 24964149 24964416 + 1.5 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 134959 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 231-31 chr9 33722045 33722278 + 1.5 NA Intergenic Intergenic 16255 NR_109755 101929688 Hs.372465 NR_109755 ENSG00000233776 LINC01251 - long intergenic non-protein coding RNA 1251 ncRNA 351.667-7 chr14 64190990 64191419 + 1.5 NA intron (NM_015180, intron 99 of 114) intron (NM_015180, intron 99 of 114) -22940 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 278.167-18 chr3 43860893 43861202 + 1.5 NA Intergenic Intergenic -169453 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 321.667-6 chr20 48295393 48295724 + 1.5 NA Intergenic Intergenic -64353 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 340.5 chr10 104350108 104350676 + 1.5 NA TTS (NR_108036) TTS (NR_108036) 3183 NR_108036 100505869 Hs.338140 NR_108036 CFAP58-DT CCDC147-AS1|CFAP58-AS1|lncITPRIP-1 CFAP58 divergent transcript ncRNA 323.333-18 chr7 28061942 28062296 + 1.5 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -118338 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 193-39 chr9 91842257 91842476 + 1.5 NA intron (NM_001318204, intron 1 of 7) MIRb|SINE|MIR 107862 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 288-12 chr15 50908425 50908983 + 1.5 NA promoter-TSS (NM_007347) promoter-TSS (NM_007347) 21 NM_001252127 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 subunit epsilon 1 protein-coding 258-9 chr14 40391207 40391415 + 1.5 NA Intergenic Intergenic -563400 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 193.5-25 chr2 70825025 70825329 + 1.5 NA Intergenic L1MC3|LINE|L1 -4578 NM_001258027 165530 Hs.681239 NM_173535 ENSG00000152672 CLEC4F CLECSF13|KCLR C-type lectin domain family 4 member F protein-coding 249.667-2 chr1 196315698 196315983 + 1.5 NA intron (NM_001287820, intron 19 of 26) intron (NM_001287820, intron 19 of 26) -227125 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 200.333-34 chr6 63490273 63490525 + 1.5 NA Intergenic Intergenic -81613 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 176-13 chr15 55191186 55191303 + 1.5 NA intron (NM_016304, intron 2 of 5) intron (NM_016304, intron 2 of 5) 5697 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 222.667-32 chr4 142353276 142353521 + 1.5 NA intron (NM_001331040, intron 7 of 25) intron (NM_001331040, intron 7 of 25) 493137 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 290.333-15 chr22 27224275 27224524 + 1.5 NA intron (NM_001350812, intron 1 of 2) intron (NM_001350812, intron 1 of 2) 280 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 280.334-4 chr5 133870736 133870989 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -42815 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 231.833-20 chr8 119329438 119329627 + 1.5 NA Intergenic L1MA3|LINE|L1 4361 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 221-24 chr21 33160400 33160787 + 1.5 NA Intergenic Intergenic 9643 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 163.333 chr1 29181949 29182184 + 1.5 NA promoter-TSS (NM_005626) promoter-TSS (NM_005626) -166 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 387-9 chr2 13978757 13979151 + 1.5 NA Intergenic L1M4|LINE|L1 422004 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 240-31 chr20 52392938 52393151 + 1.5 NA Intergenic Intergenic -201059 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 235.667-20 chr3 39723257 39723526 + 1.5 NA Intergenic Intergenic -85523 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 299.5-6 chr13 25126822 25127060 + 1.5 NA Intergenic L1MA4|LINE|L1 30803 NM_030979 5042 Hs.458280 NM_030979 ENSG00000151846 PABPC3 PABP3|PABPL3|tPABP poly(A) binding protein cytoplasmic 3 protein-coding 302.667 chr1 58251398 58251612 + 1.5 NA promoter-TSS (NM_001353980) promoter-TSS (NM_001353980) -958 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 257-6 chr10 91855847 91856216 + 1.5 NA intron (NM_025235, intron 23 of 26) intron (NM_025235, intron 23 of 26) 53455 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 274.666-9 chr7 37062099 37062521 + 1.5 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 64514 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 489.334-2 chr22 28266821 28267565 + 1.5 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -192676 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 195.333-24 chr6 25458653 25458792 + 1.5 NA intron (NM_001173977, intron 8 of 36) MIR|SINE|MIR 179348 NM_017640 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 198.166-3 chr5 14685630 14685879 + 1.5 NA intron (NM_138348, intron 4 of 6) intron (NM_138348, intron 4 of 6) 21036 NM_138348 90268 Hs.406335 NM_138348 ENSG00000154124 OTULIN AIPDS|FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 231.333-11 chr11 67286770 67287208 + 1.5 NA TTS (NM_001619) TTS (NM_001619) -2314 NM_207354 338692 Hs.438673 NM_207354 ENSG00000172932 ANKRD13D - ankyrin repeat domain 13D protein-coding 210.167-29 chr6 35584617 35584795 + 1.5 NA 3' UTR (NM_001145777, exon 7 of 7) 3' UTR (NM_001145777, exon 7 of 7) -71810 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 440.833-5 chr7 133311734 133312113 + 1.5 NA intron (NM_021807, intron 4 of 17) L1ME4b|LINE|L1 21042 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 179.5-41 chr5 158328010 158328226 + 1.5 NA intron (NR_109888, intron 5 of 6) L1MC2|LINE|L1 81655 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 287.333-19 chr8 90700844 90701126 + 1.5 NA Intergenic Intergenic -54902 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 278.5-12 chr2 88575848 88576215 + 1.5 NA TTS (NR_110236) TTS (NR_110236) 37311 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 398-4 chr12 87829746 87830072 + 1.5 NA Intergenic Intergenic -45198 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 293-6 chr11 46336393 46336714 + 1.5 NA intron (NM_201532, intron 1 of 30) AluJo|SINE|Alu 3627 NM_201532 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding 328.5-5 chr21 24978152 24978525 + 1.5 NA intron (NR_046198, intron 2 of 3) MER110-int|LTR|ERV1 137788 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 229.5-13 chr16 24152912 24153111 + 1.5 NA intron (NM_002738, intron 9 of 16) intron (NM_002738, intron 9 of 16) -50105 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 216-2 chr1 50016743 50017012 + 1.5 NA intron (NM_001323575, intron 1 of 12) L1PA15|LINE|L1 7077 NM_032785 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 326.167-4 chr14 70227392 70227730 + 1.5 NA intron (NR_135825, intron 2 of 3) L1PA16|LINE|L1 20240 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 260.667-32 chr20 37164719 37164948 + 1.5 NA intron (NM_152503, intron 5 of 24) L1ME1|LINE|L1 -14213 NM_001324304 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 290-20 chr9 105328272 105328581 + 1.5 NA intron (NM_001330731, intron 3 of 15) L2a|LINE|L2 83775 NM_080546 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 198.5-20 chr19 28072754 28072942 + 1.5 NA Intergenic MIRc|SINE|MIR -278908 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 354-13 chr4 166090922 166091255 + 1.5 NA intron (NM_012464, intron 18 of 20) intron (NM_012464, intron 18 of 20) 217851 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 193.5-20 chr17 58005852 58006024 + 1.5 NA non-coding (NR_034041, exon 3 of 4) non-coding (NR_034041, exon 3 of 4) 1308 NM_001078166 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 535.667-4 chr3 98984396 98984867 + 1.5 NA Intergenic L1ME1|LINE|L1 -82936 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 306.334-6 chr12 44908368 44908811 + 1.5 NA intron (NM_001145110, intron 1 of 20) L2a|LINE|L2 5339 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 285.5-3 chr10 63236184 63236386 + 1.5 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 32938 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 232.833-19 chr2 154568894 154569128 + 1.5 NA Intergenic MER46C|DNA|TcMar-Tigger -111573 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 230.5-24 chr4 17168771 17169087 + 1.5 NA Intergenic Intergenic 17128 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 301.5-8 chr14 36070684 36070894 + 1.5 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 362 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 247.667-2 chr1 239622419 239622739 + 1.5 NA intron (NM_001347716, intron 3 of 7) Tigger1|DNA|TcMar-Tigger -6494 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 200.334 chr10 51485265 51485438 + 1.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 185778 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 189.333-6 chr11 117117858 117118089 + 1.5 NA Intergenic Intergenic -19545 NM_001281748 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 339 chr1 115668750 115669067 + 1.5 NA intron (NM_001172411, intron 4 of 7) MLT1H|LTR|ERVL-MaLR 26279 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 168.5-33 chr4 16329272 16329628 + 1.5 NA Intergenic L2c|LINE|L2 102787 NR_027696 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 351.167-4 chr7 9344081 9344367 + 1.5 NA Intergenic Intergenic -290046 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 174.5-26 chr4 71383033 71383199 + 1.5 NA intron (NM_003759, intron 3 of 22) intron (NM_003759, intron 3 of 22) 44063 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 209.667-44 chr9 28737339 28737537 + 1.5 NA intron (NM_001354574, intron 2 of 5) MLT1G1|LTR|ERVL-MaLR -18133 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 297.667-10 chr17 28644130 28644411 + 1.5 NA intron (NM_001321561, intron 1 of 10) intron (NM_001321561, intron 1 of 10) 888 NM_014680 9703 Hs.151761 NM_014680 ENSG00000007202 KIAA0100 BCOX|BCOX1|CT101|FMP27 KIAA0100 protein-coding 164.5-9 chr11 31407255 31407406 + 1.5 NA intron (NM_181706, intron 2 of 4) intron (NM_181706, intron 2 of 4) 37470 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 337.833-8 chr3 27136583 27136925 + 1.5 NA intron (NM_001304384, intron 12 of 16) intron (NM_001304384, intron 12 of 16) 79769 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 336-17 chr5 127494563 127494854 + 1.5 NA Intergenic AluSz6|SINE|Alu -22932 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 258.5-8 chr12 48391453 48391709 + 1.5 NA Intergenic L1PA10|LINE|L1 -40335 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 247.833-4 chr11 77818083 77818325 + 1.5 NA intron (NM_016578, intron 1 of 15) intron (NM_016578, intron 1 of 15) 2630 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 187.333-15 chr12 26833122 26833381 + 1.5 NA promoter-TSS (NM_002223) promoter-TSS (NM_002223) -57 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 532.334 chr11 72683895 72684745 + 1.5 NA TTS (NM_001135190) TTS (NM_001135190) -9898 NM_002599 5138 Hs.503163 NM_002599 ENSG00000186642 PDE2A CGS-PDE|PDE2A1|PED2A4|cGSPDE phosphodiesterase 2A protein-coding 354.333-5 chr2 113241035 113241425 + 1.5 NA TTS (NR_047570) TTS (NR_047570) 4961 NR_015377 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 208.167-23 chr7 1336122 1336392 + 1.5 NA Intergenic L1MD1|LINE|L1 103385 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 296.333-3 chr12 22544195 22544832 + 1.5 NA promoter-TSS (NM_001286175) promoter-TSS (NM_001286175) 33 NM_001286176 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 287-16 chr2 26296761 26297068 + 1.5 NA Intergenic Intergenic 22135 NM_001145168 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 390.167 chr12 26648411 26649014 + 1.5 NA intron (NM_002223, intron 21 of 56) intron (NM_002223, intron 21 of 56) 184482 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 258-18 chr2 106679530 106679868 + 1.5 NA Intergenic Intergenic 192335 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 320.334-2 chr11 104304510 104304809 + 1.5 NA Intergenic Intergenic -140512 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 318.334-10 chr5 42767663 42767963 + 1.5 NA intron (NM_001134848, intron 3 of 8) intron (NM_001134848, intron 3 of 8) 10995 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 187.5-11 chr11 36146373 36146586 + 1.5 NA intron (NM_001304263, intron 3 of 4) MLT1C|LTR|ERVL-MaLR -68578 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 478.833-4 chr21 28742296 28742811 + 1.5 NA Intergenic Intergenic 142814 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 204.333-4 chr11 29415082 29415359 + 1.5 NA Intergenic L1ME1|LINE|L1 -179193 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 183.833-11 chr14 84510983 84511155 + 1.5 NA Intergenic Intergenic -760863 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 238-33 chr7 123537045 123537289 + 1.5 NA non-coding (NR_104168, exon 6 of 6) non-coding (NR_104168, exon 6 of 6) -2503 NR_104245 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 193.5-55 chrX 87933184 87933389 + 1.5 NA Intergenic Intergenic 415484 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 347.334 chr1 20440717 20441006 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -12067 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 262-19 chr4 134133019 134133367 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 68596 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 194-39 chr7 76335241 76335474 + 1.5 NA intron (NM_012479, intron 1 of 1) intron (NM_012479, intron 1 of 1) 23634 NM_012479 7532 Hs.744840 NM_012479 ENSG00000170027 YWHAG 14-3-3GAMMA|EIEE56|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma protein-coding 270.333-7 chr15 37898565 37898791 + 1.5 NA Intergenic Intergenic -35929 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 399.667-6 chr6 2354700 2355307 + 1.5 NA intron (NR_046229, intron 4 of 6) intron (NR_046229, intron 4 of 6) 109250 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 197.334-5 chr2 61355045 61355297 + 1.5 NA intron (NM_014709, intron 10 of 79) intron (NM_014709, intron 10 of 79) 62206 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 228-34 chr5 2928533 2928810 + 1.5 NA Intergenic Intergenic 10817 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 405.333-8 chr4 89657853 89658457 + 1.5 NA Intergenic Intergenic -178246 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 251-27 chr5 15737210 15737451 + 1.5 NA intron (NM_001278317, intron 2 of 3) L2c|LINE|L2 -122328 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 308.333-10 chr2 122764124 122764594 + 1.5 NA Intergenic L1M3d|LINE|L1 309122 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 275.833-8 chr11 112318307 112318531 + 1.5 NA intron (NR_126004, intron 2 of 3) MER89|LTR|ERV1 47670 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 417.833-3 chr11 72223257 72223562 + 1.5 NA Intergenic CpG -1358 NM_001567 3636 Hs.523875 NM_001567 ENSG00000165458 INPPL1 OPSMD|SHIP2 inositol polyphosphate phosphatase like 1 protein-coding 250.5-17 chr3 119236422 119236674 + 1.5 NA intron (NM_212543, intron 2 of 8) intron (NM_212543, intron 2 of 8) 4330 NM_212543 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 292.5-13 chr20 6581586 6581962 + 1.5 NA Intergenic Intergenic 154362 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 283.167-3 chr11 47214421 47214851 + 1.5 NA promoter-TSS (NM_000107) promoter-TSS (NM_000107) -306 NM_001300734 1643 Hs.700338 NM_000107 ENSG00000134574 DDB2 DDBB|UV-DDB2|XPE damage specific DNA binding protein 2 protein-coding 245.833-11 chr16 65624789 65624992 + 1.5 NA Intergenic Intergenic -48590 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 201.167 chr1 25096551 25096792 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie 73168 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 398.333 chr1 227804946 227805506 + 1.5 NA Intergenic Intergenic -10491 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 351.5-10 chr6 46625404 46625834 + 1.5 NA intron (NM_016593, intron 6 of 11) intron (NM_016593, intron 6 of 11) 27199 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 473.834 chr13 69853382 69853895 + 1.5 NA intron (NM_001286725, intron 4 of 9) intron (NM_001286725, intron 4 of 9) -253575 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 424.5-10 chr2 216013675 216014171 + 1.5 NA promoter-TSS (NM_018000) promoter-TSS (NM_018000) -372 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 298.333-5 chr11 111836341 111836578 + 1.5 NA intron (NR_147984, intron 12 of 15) intron (NR_147984, intron 12 of 15) 34822 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 212.834 chr12 11565643 11565843 + 1.5 NA Intergenic L1MC4|LINE|L1 17713 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 255.333-24 chr6 6152032 6152299 + 1.5 NA intron (NM_000129, intron 13 of 14) intron (NM_000129, intron 13 of 14) -17169 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 226-39 chr8 88651333 88651613 + 1.5 NA Intergenic L1MCa|LINE|L1 -323990 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 381.167-3 chr12 14694774 14695293 + 1.5 NA intron (NM_004963, intron 1 of 26) intron (NM_004963, intron 1 of 26) 1566 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 230.5-22 chr3 180957042 180957238 + 1.5 NA intron (NM_005087, intron 9 of 16) intron (NM_005087, intron 9 of 16) 32378 NM_001190233 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 300.666-5 chr6 127603559 127603929 + 1.5 NA Intergenic L1M1|LINE|L1 26570 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 237.5 chr1 45127984 45128166 + 1.5 NA intron (NM_020883, intron 1 of 13) L1MD1|LINE|L1 78530 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 193-28 chr4 40324622 40324831 + 1.5 NA intron (NR_121640, intron 1 of 2) intron (NR_121640, intron 1 of 2) 8242 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 346.833 chr10 85596947 85597378 + 1.5 NA intron (NR_038986, intron 2 of 2) intron (NR_038986, intron 2 of 2) 19431 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 298-19 chr7 49336301 49336658 + 1.5 NA Intergenic Intergenic 411932 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 185-14 chr11 128198433 128198645 + 1.5 NA Intergenic Intergenic -10227 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 195.5-12 chr17 48486672 48486988 + 1.5 NA Intergenic Intergenic 41997 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 200.833 chr1 40773488 40773894 + 1.5 NA Intergenic Intergenic -10096 NM_004700 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 348-7 chr2 69916619 69916951 + 1.5 NA intron (NM_001202514, intron 2 of 4) intron (NM_001202514, intron 2 of 4) 1676 NM_002357 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 293-3 chr10 28612779 28613038 + 1.5 NA intron (NM_100486, intron 9 of 12) intron (NM_100486, intron 9 of 12) -64613 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 207-16 chr2 111151438 111151642 + 1.5 NA intron (NM_001204106, intron 3 of 3) intron (NM_001204106, intron 3 of 3) 30626 NM_207003 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 262.333-16 chr22 45969199 45969499 + 1.5 NA intron (NM_058238, intron 1 of 3) intron (NM_058238, intron 1 of 3) 7813 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 310.333-10 chr3 159287255 159287671 + 1.5 NA intron (NM_001197108, intron 1 of 6) L1ME4a|LINE|L1 4817 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 330.167-8 chr6 132270472 132270760 + 1.5 NA Intergenic Intergenic 130859 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 232.667-35 chr7 13467044 13467391 + 1.5 NA Intergenic Intergenic 519297 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 263.167-18 chr8 103279046 103279261 + 1.5 NA intron (NR_148213, intron 2 of 3) intron (NR_148213, intron 2 of 3) -19341 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 195-43 chr7 150903843 150904007 + 1.5 NA Intergenic Intergenic 51408 NM_001272072 26 Hs.647097 NM_001091 ENSG00000002726 AOC1 ABP|ABP1|DAO|DAO1|KAO amine oxidase copper containing 1 protein-coding 226.5-41 chr8 107721992 107722181 + 1.5 NA Intergenic L1ME2|LINE|L1 -224168 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 220.667-35 chr7 1516723 1516930 + 1.5 NA Intergenic Intergenic -12437 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 260.5-2 chr10 119583552 119583770 + 1.5 NA intron (NM_001323970, intron 3 of 12) intron (NM_001323970, intron 3 of 12) 13368 NM_001323967 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 299-8 chr2 49070974 49071355 + 1.5 NA intron (NM_000145, intron 1 of 9) L1ME3Cz|LINE|L1 11561 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 173.5-53 chr8 78718814 78718987 + 1.5 NA non-coding (NR_156423, exon 11 of 11) non-coding (NR_156423, exon 11 of 11) 5474 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 210.5-34 chr7 32138364 32138532 + 1.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -67012 NM_001322055 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 359-6 chr12 98504472 98504749 + 1.5 NA promoter-TSS (NR_038383) promoter-TSS (NR_038383) -755 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LINC02453 - long intergenic non-protein coding RNA 2453 ncRNA 323.667-17 chr2 213001421 213001791 + 1.5 NA 3' UTR (NM_016260, exon 8 of 8) 3' UTR (NM_016260, exon 8 of 8) -75270 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 167.333-32 chr20 42466217 42466487 + 1.5 NA intron (NM_133170, intron 8 of 31) L1MC5a|LINE|L1 -219131 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 243.333-17 chr14 73197376 73197627 + 1.5 NA intron (NM_000021, intron 7 of 11) intron (NM_000021, intron 7 of 11) -40005 NR_158677 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 480.833-5 chr4 20394996 20395577 + 1.5 NA TTS (NR_037876) TTS (NR_037876) 3097 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 419.5-9 chr9 21004354 21004836 + 1.5 NA 3' UTR (NM_001321883, exon 7 of 7) 3' UTR (NM_001321883, exon 7 of 7) 27045 NM_001321883 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 299-6 chr11 44110181 44110624 + 1.5 NA intron (NM_207122, intron 3 of 13) intron (NM_207122, intron 3 of 13) 14205 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 339-13 chr3 161408966 161409487 + 1.5 NA Intergenic Intergenic -17201 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 379.167-7 chr2 33158937 33159197 + 1.5 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 24470 NM_001166266 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 296.667-6 chr14 21930726 21931147 + 1.5 NA Intergenic L1MB3|LINE|L1 -259919 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 178.5-38 chr7 66060942 66061270 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -14713 NM_000048 435 Hs.632015 NM_000048 ENSG00000126522 ASL ASAL argininosuccinate lyase protein-coding 266.833-9 chr2 64167868 64168148 + 1.5 NA Intergenic LTR16|LTR|ERVL -23588 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 264.667-20 chrX 47497394 47497712 + 1.5 NA Intergenic HAL1M8|LINE|L1 -14284 NM_001324150 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 391.833-5 chr20 43850939 43851583 + 1.5 NA Intergenic Intergenic -43457 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 446.501 chr8 120082737 120083410 + 1.5 NA Intergenic Intergenic -42029 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 171-25 chr17 61880269 61880424 + 1.5 NA intron (NM_001351695, intron 17 of 24) intron (NM_001351695, intron 17 of 24) -16787 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 169.667-13 chr10 97687204 97687381 + 1.5 NA promoter-TSS (NM_021732) promoter-TSS (NM_021732) -51 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 164.334-6 chr5 168706714 168706837 + 1.5 NA promoter-TSS (NR_130737) promoter-TSS (NR_130737) -152 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 177.667-27 chr22 20075745 20075920 + 1.5 NA Intergenic MER31-int|LTR|ERV1 -4400 NM_001190326 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 235.833-22 chr8 132762113 132762403 + 1.5 NA Intergenic Intergenic -1676 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 331.833-2 chr13 58022097 58022430 + 1.5 NA Intergenic Intergenic -143564 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 279.833-11 chr5 140807632 140807980 + 1.5 NA exon (NM_018907, exon 1 of 4) exon (NM_018907, exon 1 of 4) 738 NM_031500 56144 Hs.199343 NM_018907 ENSG00000204967 PCDHA4 CNR1|CNRN1|CRNR1|PCDH-ALPHA4 protocadherin alpha 4 protein-coding 455.833-3 chr7 41189013 41189460 + 1.5 NA Intergenic Intergenic 87632 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 223.834-6 chr17 72120566 72120832 + 1.5 NA promoter-TSS (NR_103737) promoter-TSS (NR_103737) 94 NR_103737 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 209-18 chr2 105847540 105847774 + 1.5 NA intron (NM_003581, intron 2 of 4) intron (NM_003581, intron 2 of 4) -4190 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 290.333-16 chr3 53890830 53891152 + 1.5 NA intron (NM_021237, intron 1 of 4) intron (NM_021237, intron 1 of 4) 868 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 282.666-5 chr22 30890399 30891087 + 1.5 NA exon (NM_001282739, exon 8 of 14) exon (NM_001282739, exon 8 of 14) 9062 NM_001282742 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 192.667-8 chr12 26923590 26923793 + 1.5 NA intron (NM_018164, intron 7 of 16) intron (NM_018164, intron 7 of 16) 14290 NM_018164 55726 Hs.505077 NM_018164 ENSG00000064102 INTS13 ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30 integrator complex subunit 13 protein-coding 305.001 chr11 19890503 19890796 + 1.5 NA intron (NM_001244963, intron 6 of 39) intron (NM_001244963, intron 6 of 39) -130566 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 329.333-3 chr12 15134105 15134552 + 1.5 NA intron (NM_032918, intron 2 of 4) L1MC1|LINE|L1 -17595 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 320.5-8 chr13 23623286 23623613 + 1.5 NA intron (NM_001354985, intron 4 of 8) L1MB2|LINE|L1 44089 NM_001354985 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 270.667-19 chr7 23708705 23709029 + 1.5 NA Intergenic L1ME1|LINE|L1 -1352 NM_001260505 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 232.833-16 chr2 11645173 11645358 + 1.5 NA Intergenic L1MA3|LINE|L1 24930 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 219.667-2 chr10 74612399 74612628 + 1.5 NA intron (NM_001369124, intron 8 of 9) L1PA17|LINE|L1 -83189 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 284.5-13 chr20 46961394 46961735 + 1.5 NA intron (NM_172110, intron 1 of 13) L1MA5|LINE|L1 66721 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 389.5-7 chr7 7948361 7948714 + 1.5 NA Intergenic Intergenic 20215 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 362.667-6 chr20 59933902 59934440 + 1.5 NA promoter-TSS (NM_014258) promoter-TSS (NM_014258) 392 NM_001190826 63939 Hs.54973 NM_022106 ENSG00000196227 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217 member B protein-coding 284.333-16 chr5 26121205 26121571 + 1.5 NA Intergenic Intergenic 917198 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 375-9 chr16 64463495 64463802 + 1.5 NA Intergenic AluSc|SINE|Alu 658415 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 251.334-16 chr8 50178162 50178432 + 1.5 NA intron (NR_135797, intron 2 of 20) (CTCT)n|Simple_repeat|Simple_repeat 14166 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 222-24 chr5 39756580 39756772 + 1.5 NA Intergenic Intergenic 236245 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 236.167-2 chr1 44331795 44331968 + 1.5 NA intron (NM_001301701, intron 2 of 7) L2c|LINE|L2 23376 NM_001301698 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 553.834-2 chr6 152946502 152947173 + 1.5 NA Intergenic Intergenic 36204 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 501.667-4 chr2 165173454 165174056 + 1.5 NA intron (NM_006922, intron 3 of 27) intron (NM_006922, intron 3 of 27) 30295 NM_001081677 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 374.5-10 chr5 69126959 69127378 + 1.5 NA intron (NM_022902, intron 14 of 15) L1ME4a|LINE|L1 33154 NM_024055 64924 Hs.631975 NM_022902 ENSG00000145740 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 member 5 protein-coding 254.333-24 chr2 120540279 120540590 + 1.5 NA Intergenic Intergenic -74085 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 165-38 chr4 41840543 41840661 + 1.5 NA Intergenic MIR|SINE|MIR 42009 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 297.5-10 chr16 13274346 13274691 + 1.5 NA Intergenic Intergenic 372920 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 172-40 chr5 42072572 42072772 + 1.5 NA Intergenic Intergenic 102673 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 385.667-9 chr20 49562082 49562807 + 1.5 NA intron (NM_000961, intron 1 of 9) intron (NM_000961, intron 1 of 9) 5693 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 718.334-2 chr4 2008962 2009743 + 1.5 NA promoter-TSS (NM_005663) promoter-TSS (NM_005663) -378 NM_005663 7469 Hs.21771 NM_005663 ENSG00000185049 NELFA NELF-A|P/OKcl.15|WHSC2 negative elongation factor complex member A protein-coding 242.833-12 chr2 225651001 225651258 + 1.5 NA intron (NM_001371273, intron 6 of 7) intron (NM_001371273, intron 6 of 7) 250243 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 224.333-30 chr5 148756274 148756543 + 1.5 NA Intergenic L1MA10|LINE|L1 -70185 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 235-37 chrX 151871445 151871720 + 1.5 NA Intergenic Intergenic 39501 NR_136578 105373368 Hs.256904 NR_136578 MAGEA4-AS1 - MAGEA4 antisense RNA 1 ncRNA 286.5-12 chr5 12053614 12053896 + 1.5 NA Intergenic Intergenic -149309 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 255.667-11 chr4 54228207 54228654 + 1.5 NA promoter-TSS (NM_001347828) promoter-TSS (NM_001347828) -863 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 183.333-31 chr17 71360744 71360967 + 1.5 NA Intergenic L2a|LINE|L2 -158676 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 319.333-14 chr6 97066140 97066530 + 1.5 NA intron (NR_104421, intron 5 of 8) intron (NR_104421, intron 5 of 8) 56259 NM_001323264 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 165-30 chr2 95409650 95409824 + 1.5 NA intron (NM_016044, intron 3 of 7) L1MC4|LINE|L1 7029 NM_016044 51011 Hs.531247 NM_016044 ENSG00000115042 FAHD2A CGI-105 fumarylacetoacetate hydrolase domain containing 2A protein-coding 276.333-16 chr8 69112224 69112524 + 1.5 NA Intergenic Intergenic -8184 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 272.834-2 chr1 102678388 102678694 + 1.5 NA Intergenic Intergenic 429955 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 271.5-24 chr3 83416346 83416674 + 1.5 NA Intergenic Intergenic 1430368 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 288.667-7 chr15 57145604 57145916 + 1.5 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -73670 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 251.5-30 chr8 113809321 113809584 + 1.5 NA Intergenic Intergenic -372513 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 340-10 chr2 159960990 159961433 + 1.5 NA intron (NM_001007267, intron 20 of 26) MamTip2|DNA|hAT-Tip100 -56455 NM_001198760 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 227-8 chr11 46669947 46670249 + 1.5 NA intron (NM_001346358, intron 16 of 16) intron (NM_001346358, intron 16 of 16) 30521 NM_004308 392 Hs.138860 NM_004308 ENSG00000175220 ARHGAP1 CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP Rho GTPase activating protein 1 protein-coding 206-21 chr2 151460800 151461039 + 1.5 NA intron (NM_001177665, intron 25 of 33) intron (NM_001177665, intron 25 of 33) 51017 NM_001177663 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 304-15 chr2 106194453 106194789 + 1.5 NA promoter-TSS (NM_001253875) promoter-TSS (NM_001253875) -282 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 286.001-4 chr18 6654633 6654986 + 1.5 NA Intergenic Intergenic -74907 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 343.667-9 chr2 34943512 34943970 + 1.5 NA Intergenic Intergenic 266184 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 404-7 chr5 65146635 65147130 + 1.5 NA Intergenic Intergenic 335038 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 404.5 chr1 40583634 40583970 + 1.5 NA Intergenic Intergenic 52165 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 217-25 chr4 75513394 75513653 + 1.5 NA promoter-TSS (NM_144721) promoter-TSS (NM_144721) 907 NM_001278536 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 304.833-7 chr14 74151293 74151681 + 1.5 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) 66534 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 223.5-8 chr12 52139875 52140114 + 1.5 NA Intergenic MIR|SINE|MIR 46425 NR_120440 26628 Hs.524431 NR_120438 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 175.167-8 chr11 83482944 83483166 + 1.5 NA intron (NM_001142699, intron 22 of 27) intron (NM_001142699, intron 22 of 27) -196648 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 170.833-30 chr6 26172742 26173022 + 1.5 NA Intergenic ORSL|DNA|hAT-Tip100 -10914 NM_003523 8344 Hs.534369 NM_003523 ENSG00000274290 HIST1H2BE H2B.h|H2B/h|H2BFH|dJ221C16.8 histone cluster 1 H2B family member e protein-coding 347.167 chr1 46037285 46037527 + 1.5 NA Intergenic Intergenic 93267 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 259-10 chr10 82035619 82035918 + 1.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 158081 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 352.167-2 chr15 61121126 61121540 + 1.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 107969 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 248.833-6 chr10 70758963 70759259 + 1.5 NA intron (NM_080722, intron 21 of 21) MIR3|SINE|MIR 23462 NR_134532 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 232.833-28 chr7 138864849 138865129 + 1.5 NA intron (NM_020910, intron 15 of 19) AluJb|SINE|Alu -66793 NM_130840 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 290.833-12 chr8 53754701 53754982 + 1.5 NA intron (NM_213620, intron 12 of 13) intron (NM_213620, intron 12 of 13) 88201 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 340.5-11 chr9 126939357 126939644 + 1.5 NA intron (NM_001366400, intron 1 of 18) MIR|SINE|MIR -22725 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 195.667-45 chr8 108073441 108073611 + 1.5 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 8413 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 511.667-4 chr8 133964765 133965405 + 1.5 NA Intergenic MIRc|SINE|MIR 78589 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 387.5-5 chr20 62920986 62921453 + 1.5 NA intron (NM_022105, intron 1 of 5) Charlie1b|DNA|hAT-Charlie 5286 NM_001193370 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 600.333-3 chr9 80281450 80282169 + 1.5 NA Intergenic HAL1|LINE|L1 306786 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 261-6 chr14 51003724 51004093 + 1.5 NA intron (NM_015163, intron 5 of 9) intron (NM_015163, intron 5 of 9) -59425 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 311-16 chr6 25088214 25088649 + 1.5 NA intron (NR_002174, intron 10 of 12) L2|LINE|L2 -46143 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 279-2 chr1 36428261 36428454 + 1.5 NA TTS (NM_206837) TTS (NM_206837) -9779 NR_145725 109616970 NR_145725 ENSG00000201448 SNORA63C - small nucleolar RNA, H/ACA box 63C snoRNA 214-33 chr2 124263991 124264244 + 1.5 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 238830 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 169.667-39 chr2 227818304 227818506 + 1.5 NA TTS (NM_001130046) TTS (NM_001130046) 4563 NM_004591 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 196-35 chr4 93361364 93361530 + 1.5 NA intron (NM_001286838, intron 7 of 14) L1MCc|LINE|L1 -467306 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 282.167-5 chr13 98448395 98448703 + 1.5 NA 3' UTR (NM_001286839, exon 28 of 28) 3' UTR (NM_001286839, exon 28 of 28) 73576 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 316-14 chr6 56100884 56101268 + 1.5 NA intron (NM_030820, intron 17 of 29) MER5A|DNA|hAT-Charlie -9414 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 222.833-21 chr8 135456684 135456868 + 1.5 NA promoter-TSS (NM_006558) promoter-TSS (NM_006558) -680 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 260-15 chr2 144739298 144739471 + 1.5 NA intron (NR_033870, intron 1 of 4) ERVL-int|LTR|ERVL 71417 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 322.833-7 chr5 18161571 18161999 + 1.5 NA Intergenic L1M4|LINE|L1 354511 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 311.667-9 chr19 35931625 35932164 + 1.5 NA Intergenic Intergenic -4480 NM_024509 79414 Hs.143792 NM_024509 ENSG00000126243 LRFN3 FIGLER1|SALM4 leucine rich repeat and fibronectin type III domain containing 3 protein-coding 184.833-23 chr4 86614064 86614289 + 1.5 NA intron (NM_080685, intron 1 of 47) intron (NM_080685, intron 1 of 47) 19861 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 278.166-2 chr3 17605261 17605641 + 1.5 NA intron (NM_001349088, intron 2 of 21) intron (NM_001349088, intron 2 of 21) 94569 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 418.667-8 chr8 109450851 109451558 + 1.5 NA intron (NM_177531, intron 41 of 77) intron (NM_177531, intron 41 of 77) -88496 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 379.5-11 chrX 71012441 71012760 + 1.5 NA Intergenic L2c|LINE|L2 55734 NM_013346 29934 Hs.260750 NM_013346 ENSG00000147164 SNX12 - sorting nexin 12 protein-coding 315.333-15 chr4 5821525 5822016 + 1.5 NA exon (NM_001313, exon 14 of 14) exon (NM_001313, exon 14 of 14) 66043 NM_001288662 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 218.167-2 chr1 50960385 50960615 + 1.5 NA promoter-TSS (NM_007051) promoter-TSS (NM_007051) -233 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 180.833-26 chr9 69797426 69797684 + 1.5 NA Intergenic MIR|SINE|MIR 23184 NR_038833 494558 Hs.130722 NR_038833 ENSG00000225626 C9orf135-DT C9orf135-AS1 C9orf135 divergent transcript ncRNA 187.5-40 chr8 16559718 16559878 + 1.5 NA Intergenic Intergenic -367007 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 356.167-7 chr2 45990789 45991308 + 1.5 NA intron (NM_005400, intron 6 of 14) AluSx1|SINE|Alu -306359 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 264.5-24 chr7 130100602 130100788 + 1.5 NA intron (NM_014997, intron 2 of 9) intron (NM_014997, intron 2 of 9) 30161 NM_014997 23008 Hs.520710 NM_014997 ENSG00000128607 KLHDC10 slim kelch domain containing 10 protein-coding 298.833-8 chr20 22636989 22637406 + 1.5 NA Intergenic L1M4|LINE|L1 -29680 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 227.667-4 chr1 212291682 212292181 + 1.5 NA intron (NM_006243, intron 1 of 12) intron (NM_006243, intron 1 of 12) 6521 NM_006243 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 331.999 chr14 101771440 101772035 + 1.5 NA intron (NM_001352915, intron 2 of 14) AluSg7|SINE|Alu 9367 NM_001352915 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 332.833-9 chr16 62629202 62629541 + 1.5 NA Intergenic AluSx|SINE|Alu -592933 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 267.833-4 chr16 67853923 67854116 + 1.5 NA intron (NM_001322041, intron 1 of 4) AluSc|SINE|Alu -6326 NM_025082 80152 Hs.288382 NM_025082 ENSG00000102901 CENPT C16orf56|CENP-T centromere protein T protein-coding 308.5-16 chr20 45708797 45709175 + 1.5 NA TTS (NM_172005) TTS (NM_172005) -3806 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 416.833 chr1 58047171 58047488 + 1.5 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 186748 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 416.333-2 chr11 42628207 42628573 + 1.5 NA Intergenic MIR|SINE|MIR -374700 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 182-38 chr5 118829120 118829339 + 1.5 NA Intergenic Intergenic -145357 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 287.667-2 chr1 158508824 158509092 + 1.5 NA Intergenic Intergenic 29080 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 215.667-37 chr5 94981289 94981489 + 1.5 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 100477 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 349.833-14 chr8 131703968 131704359 + 1.5 NA Intergenic L2b|LINE|L2 -199930 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 187.167-29 chr8 111060652 111060786 + 1.5 NA Intergenic Intergenic -33286 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 400-3 chr11 101848074 101848489 + 1.5 NA Intergenic Intergenic -66729 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 234-6 chr10 34711029 34711263 + 1.5 NA intron (NM_001184789, intron 1 of 22) AluJr|SINE|Alu 104150 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 302.833-10 chr4 88786996 88787522 + 1.5 NA intron (NM_001015045, intron 4 of 17) intron (NM_001015045, intron 4 of 17) 36102 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 523-4 chr18 76923069 76923984 + 1.5 NA intron (NM_001306089, intron 21 of 30) intron (NM_001306089, intron 21 of 30) 93529 NM_001025081 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 337.834-2 chr5 12945330 12945728 + 1.5 NA intron (NR_147005, intron 2 of 4) MSTA|LTR|ERVL-MaLR 87357 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 229.667-6 chr11 98794062 98794304 + 1.5 NA Intergenic L1M2|LINE|L1 -226766 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 315.667-14 chr7 126339161 126339371 + 1.5 NA Intergenic Intergenic 718918 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 286-10 chr2 64130739 64131086 + 1.5 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 13508 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 533-2 chr12 52653310 52653737 + 1.5 NA Intergenic Intergenic -1312 NM_000423 3849 Hs.707 NM_000423 ENSG00000172867 KRT2 CK-2e|K2e|KRT2A|KRT2E|KRTE keratin 2 protein-coding 225.167-14 chr19 36985871 36986111 + 1.5 NA intron (NM_001204839, intron 6 of 8) L1ME3D|LINE|L1 69659 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 361.333-6 chr4 54418378 54418742 + 1.5 NA Intergenic MER41A|LTR|ERV1 85668 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 564-5 chr14 46618724 46619428 + 1.5 NA Intergenic L1M2|LINE|L1 32705 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 685.834-6 chr8 116447663 116448502 + 1.5 NA Intergenic Intergenic -123023 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 268.167-19 chr8 93711217 93711473 + 1.5 NA intron (NM_001283034, intron 5 of 6) intron (NM_001283034, intron 5 of 6) 10795 NM_001283034 137392 Hs.125038 NM_145269 ENSG00000188343 FAM92A FAM92A1|PAPA9 family with sequence similarity 92 member A protein-coding 192.333-14 chr13 52236459 52236653 + 1.5 NA Intergenic L1PA16|LINE|L1 -42089 NR_051963 100887750 Hs.553878 NR_002816 ENSG00000243406 MRPS31P5 MRPS31P3 mitochondrial ribosomal protein S31 pseudogene 5 pseudo 309.334 chr17 14860035 14860268 + 1.5 NA Intergenic Intergenic -154654 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 275.167-12 chr14 103630753 103631040 + 1.5 NA intron (NM_182923, intron 1 of 14) intron (NM_182923, intron 1 of 14) 1708 NM_005552 3831 Hs.20107 NM_005552 ENSG00000126214 KLC1 KLC|KNS2|KNS2A kinesin light chain 1 protein-coding 263-10 chr5 149019398 149019769 + 1.5 NA intron (NM_024577, intron 12 of 16) intron (NM_024577, intron 12 of 16) 42826 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 223.667-48 chr8 123043902 123044111 + 1.5 NA Intergenic Intergenic -1583 NM_001330601 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 250.833-8 chr17 60599298 60599544 + 1.5 NA promoter-TSS (NM_003620) promoter-TSS (NM_003620) -762 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 184.5-4 chr1 153329494 153329653 + 1.5 NA TTS (NM_020393) TTS (NM_020393) -18855 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 348.666-10 chr6 112596795 112597373 + 1.5 NA Intergenic Intergenic 249754 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 361.167-5 chr4 103691025 103691371 + 1.5 NA intron (NM_001059, intron 1 of 4) L1ME1|LINE|L1 28787 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 226.834-3 chr12 18797931 18798181 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 59937 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 307.501-2 chr19 30235191 30235443 + 1.5 NA Intergenic L2|LINE|L2 -137067 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 294-18 chr6 24064068 24064363 + 1.5 NA Intergenic L2c|LINE|L2 -62000 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 192.167-42 chr9 96630973 96631203 + 1.5 NA Intergenic Intergenic -11245 NR_147239 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 198.334 chr15 79923822 79924038 + 1.5 NA promoter-TSS (NM_001199760) promoter-TSS (NM_001199760) -176 NR_037653 400410 Hs.729127 NM_001100879 ENSG00000180953 ST20 HCCS-1 suppressor of tumorigenicity 20 protein-coding 227.667-40 chr7 105041129 105041327 + 1.5 NA intron (NM_182931, intron 3 of 26) intron (NM_182931, intron 3 of 26) 27023 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 327.5-22 chr8 17827075 17827318 + 1.5 NA Intergenic L1ME2z|LINE|L1 -25617 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 340.334-9 chr8 28657953 28658411 + 1.5 NA Intergenic Intergenic 43282 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 180.833-13 chr3 63558544 63558751 + 1.5 NA intron (NM_001130003, intron 4 of 5) Charlie2b|DNA|hAT-Charlie -8596 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 251.167-6 chr12 112013338 112013612 + 1.5 NA promoter-TSS (NR_122119) promoter-TSS (NR_122119) 49 NM_006817 10961 Hs.75841 NM_006817 ENSG00000089248 ERP29 C12orf8|ERp28|ERp31|HEL-S-107|PDI-DB|PDIA9 endoplasmic reticulum protein 29 protein-coding 722.167 chr16 71358255 71358925 + 1.5 NA promoter-TSS (NM_007088) promoter-TSS (NM_007088) -123 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 208.833-23 chr5 89405766 89405911 + 1.5 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -501733 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 212-3 chr1 110760354 110760632 + 1.5 NA Intergenic L4_C_Mam|LINE|RTE-X -85553 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 260.5-6 chr11 115365222 115365490 + 1.5 NA intron (NM_001098517, intron 1 of 8) Tigger13a|DNA|TcMar-Tigger -31400 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 309.333-11 chr2 112657120 112657375 + 1.5 NA intron (NM_005415, intron 6 of 10) intron (NM_005415, intron 6 of 10) 11308 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 311-15 chr5 17809821 17810229 + 1.5 NA intron (NR_134286, intron 1 of 7) intron (NR_134286, intron 1 of 7) 2751 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 697-2 chr2 77892062 77892886 + 1.5 NA intron (NR_110288, intron 1 of 3) L1MA7|LINE|L1 -23460 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 222.5-37 chr8 139519937 139520166 + 1.5 NA Intergenic L1MA5A|LINE|L1 183072 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 206-30 chr4 78439757 78440007 + 1.5 NA intron (NM_001166133, intron 40 of 41) intron (NM_001166133, intron 40 of 41) -111888 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 269-32 chr8 91180305 91180522 + 1.5 NA intron (NR_148895, intron 7 of 10) MLT1F1|LTR|ERVL-MaLR -25072 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 185.667-28 chr2 116621420 116621597 + 1.5 NA Intergenic L1MA9|LINE|L1 -1193183 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 288.167-8 chr14 24366545 24366946 + 1.5 NA promoter-TSS (NM_001198967) promoter-TSS (NM_001198967) -166 NM_001320043 4776 Hs.77810 NM_004554 ENSG00000100968 NFATC4 NF-AT3|NF-ATC4|NFAT3 nuclear factor of activated T cells 4 protein-coding 217.833-3 chr1 118057776 118058165 + 1.5 NA intron (NM_206996, intron 18 of 48) L1MEd|LINE|L1 127258 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 286.167-23 chr9 6567983 6568364 + 1.5 NA intron (NM_000170, intron 15 of 24) intron (NM_000170, intron 15 of 24) 77519 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 186-18 chr18 24176727 24176907 + 1.5 NA intron (NM_001242508, intron 9 of 15) L1ME1|LINE|L1 37333 NM_138644 26256 Hs.511983 NM_012189 ENSG00000154040 CABYR CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2 calcium binding tyrosine phosphorylation regulated protein-coding 366.167 chr10 19478116 19478549 + 1.5 NA intron (NM_001142308, intron 29 of 39) intron (NM_001142308, intron 29 of 39) 250218 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 225.833-2 chr1 88327819 88328325 + 1.5 NA Intergenic Intergenic -356072 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 366.167-4 chr2 123956647 123957211 + 1.5 NA Intergenic Intergenic 68245 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 283.667-16 chr7 31507267 31507651 + 1.5 NA Intergenic L1M5|LINE|L1 -6612 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 239.5-35 chr7 33197369 33197582 + 1.5 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 67911 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 398-15 chr6 54597607 54598000 + 1.5 NA Intergenic Intergenic -248968 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 298-11 chr2 121792002 121792276 + 1.5 NA Intergenic AluJr|SINE|Alu 36488 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 413-9 chr22 21972074 21972495 + 1.5 NA intron (NR_146277, intron 4 of 17) L1ME4a|LINE|L1 10503 NM_001349852 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 333-8 chr2 64620084 64620442 + 1.5 NA Intergenic L1MC2|LINE|L1 12951 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 224.667-25 chr2 108086166 108086517 + 1.5 NA Intergenic Intergenic -33586 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 244.334-3 chr10 125641014 125641391 + 1.5 NA intron (NM_001318133, intron 3 of 3) intron (NM_001318133, intron 3 of 3) 41961 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 204.833-16 chr2 218356765 218356982 + 1.5 NA promoter-TSS (NM_198559) promoter-TSS (NM_198559) 16 NM_198559 375307 Hs.645453 NM_198559 ENSG00000158428 CATIP C2orf62 ciliogenesis associated TTC17 interacting protein protein-coding 337.167-10 chr5 12187162 12187449 + 1.5 NA Intergenic Intergenic -282859 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 362.833-10 chr8 89884842 89885180 + 1.5 NA Intergenic MER89|LTR|ERV1 -16857 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 285.5-23 chr4 65580480 65580743 + 1.5 NA intron (NM_001281767, intron 3 of 16) MER34B|LTR|ERV1 88877 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 325.334-2 chr10 33161762 33162072 + 1.5 NA Intergenic L2b|LINE|L2 -45110 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 177-43 chr8 82935218 82935391 + 1.5 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 23200 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 217.167-14 chr17 44203591 44203918 + 1.5 NA Intergenic L2a|LINE|L2 4085 NR_106840 102465469 NR_106840 ENSG00000275107 MIR6782 hsa-mir-6782 microRNA 6782 ncRNA 209.167-21 chr20 58603094 58603574 + 1.5 NA intron (NR_034147, intron 6 of 6) MLT1F|LTR|ERVL-MaLR -31438 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 374.667-3 chr1 219366440 219366787 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 190711 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 494-5 chr5 172902321 172903091 + 1.5 NA intron (NM_001031711, intron 3 of 9) intron (NM_001031711, intron 3 of 9) -12377 NR_162113 113218510 NR_162113 MIR10523 - microRNA 10523 ncRNA 391.5-6 chr2 209450299 209450651 + 1.5 NA intron (NM_001039538, intron 1 of 14) Charlie7|DNA|hAT-Charlie 26428 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 266.833-18 chr4 72349215 72349441 + 1.5 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 219893 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 278.667-26 chr6 38027698 38027979 + 1.5 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 208111 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 375.834-4 chr19 40140780 40141261 + 1.5 NA Intergenic Intergenic -50077 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 238.333-2 chr1 151480813 151481162 + 1.5 NA Intergenic AluSg4|SINE|Alu -21493 NM_001194937 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 290.5 chr1 176433399 176433762 + 1.5 NA Intergenic Intergenic -29595 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 272.333-4 chr11 108270183 108270587 + 1.5 NA intron (NM_001351834, intron 19 of 63) intron (NM_001351834, intron 19 of 63) 46856 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 493.834-2 chr17 68781017 68781732 + 1.5 NA Intergenic L1M5|LINE|L1 153220 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 298.5-2 chr1 212904729 212905049 + 1.5 NA Intergenic L1M3c|LINE|L1 -45652 NM_024749 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 248.333-29 chr5 91315267 91315585 + 1.5 NA Intergenic Intergenic -1024 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 197-45 chrX 45742629 45742818 + 1.5 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 3543 NR_029635 407006 NR_029635 ENSG00000207870 MIR221 MIRN221|miRNA221|mir-221 microRNA 221 ncRNA 174.167-37 chr6 122725790 122726098 + 1.5 NA 3' UTR (NM_001270395, exon 5 of 5) 3' UTR (NM_001270395, exon 5 of 5) -23257 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 387.5 chr14 42715397 42715742 + 1.5 NA Intergenic L1M4|LINE|L1 1108713 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 472.833 chr1 209840036 209840567 + 1.5 NA intron (NM_014388, intron 7 of 11) L2b|LINE|L2 12329 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 208.5-27 chr20 55447028 55447351 + 1.5 NA Intergenic Intergenic -19992 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 433.833-3 chr4 162499262 162500003 + 1.5 NA Intergenic Intergenic -335598 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 264.334-3 chr12 45745730 45746139 + 1.5 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 16225 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 178.5-32 chr4 92168036 92168210 + 1.5 NA Intergenic L1PA17|LINE|L1 109179 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 313.5-27 chrX 153152949 153153447 + 1.5 NA Intergenic Intergenic -26086 NM_004988 4100 Hs.72879 NM_004988 ENSG00000198681 MAGEA1 CT1.1|MAGE1 MAGE family member A1 protein-coding 182.833-3 chr1 156329035 156329207 + 1.5 NA intron (NM_001008800, intron 3 of 11) Tigger3a|DNA|TcMar-Tigger -8193 NM_144627 128229 Hs.534539 NM_144627 ENSG00000163467 TSACC C1orf182|SIP|SSTK-IP TSSK6 activating cochaperone protein-coding 213.333-15 chr2 101903172 101903418 + 1.5 NA Intergenic L1MC5|LINE|L1 -80170 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 353.5-4 chr10 44179626 44180292 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -112791 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 186.167-20 chr5 72635051 72635495 + 1.5 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 25396 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 232.833-8 chr10 55051234 55051652 + 1.5 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -250152 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 338-2 chr1 204132536 204133126 + 1.5 NA intron (NM_001297762, intron 6 of 6) L1MB2|LINE|L1 -8577 NR_123739 101929441 Hs.736889 NR_123739 ENSG00000230550 ERLNC1 ElncRNA1|TC0101441 estrogen receptor responsive lncRNA 1 ncRNA 510.667-4 chr16 9256258 9256792 + 1.5 NA Intergenic Intergenic -99063 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 271 chr1 67643623 67643896 + 1.5 NA Intergenic Charlie5|DNA|hAT-Charlie -41442 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 194.667-10 chr10 76492128 76492289 + 1.5 NA intron (NM_001305581, intron 6 of 6) L1M1|LINE|L1 -395836 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 273-14 chr2 126777605 126777818 + 1.5 NA Intergenic Intergenic -121179 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 405.333-7 chr3 23075703 23076235 + 1.5 NA Intergenic Intergenic 126609 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 464.667 chr10 67128081 67128636 + 1.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 116092 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 241.5-7 chr14 63382046 63382272 + 1.5 NA intron (NR_104104, intron 11 of 12) intron (NR_104104, intron 11 of 12) -63224 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 265.333-18 chr6 140078608 140078968 + 1.5 NA intron (NR_121622, intron 2 of 3) intron (NR_121622, intron 2 of 3) -87527 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 255.667-6 chr14 47040397 47040991 + 1.5 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 302552 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 255.834-5 chr2 226592881 226593124 + 1.5 NA Intergenic Intergenic 65791 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 338.5-3 chr16 78478398 78478848 + 1.5 NA intron (NM_001291997, intron 7 of 7) MER135|DNA|DNA 378969 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 285.834-6 chr2 202923728 202924072 + 1.5 NA intron (NM_001282912, intron 2 of 13) L1PB|LINE|L1 11625 NM_001282912 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 288.833-15 chr5 31195456 31195739 + 1.5 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 1911 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 291.5-30 chr6 75400907 75401260 + 1.5 NA intron (NR_125859, intron 2 of 8) intron (NR_125859, intron 2 of 8) 17897 NR_125859 101928540 Hs.526972 NR_125859 LOC101928540 - uncharacterized LOC101928540 ncRNA 331.333-2 chr1 156054699 156055053 + 1.5 NA promoter-TSS (NM_001145264) promoter-TSS (NM_001145264) 94 NM_001145264 28956 Hs.632483 NM_014017 ENSG00000116586 LAMTOR2 ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 protein-coding 380.5-8 chr2 100562891 100563262 + 1.5 NA promoter-TSS (NM_024065) promoter-TSS (NM_024065) 83 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 385.167 chr1 2046662 2047078 + 1.5 NA Intergenic Intergenic 3200 NR_135509 105378591 Hs.371879 NR_135509 ENSG00000226969 LOC105378591 - uncharacterized LOC105378591 ncRNA 265.667-15 chr21 31493028 31493260 + 1.5 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 65943 NM_003253 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 256.334-3 chr16 28317219 28317490 + 1.5 NA intron (NM_001024401, intron 1 of 3) intron (NM_001024401, intron 1 of 3) 24829 NM_001024401 388228 Hs.97837 NM_001024401 ENSG00000188322 SBK1 SBK SH3 domain binding kinase 1 protein-coding 254.667-5 chr10 102245212 102245525 + 1.5 NA promoter-TSS (NM_004193) promoter-TSS (NM_004193) -164 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 283.833-8 chr20 35700994 35701278 + 1.5 NA TTS (NM_001323422) TTS (NM_001323422) 1731 NM_080748 140823 Hs.472564 NM_080748 ENSG00000125995 ROMO1 C20orf52|MTGM|MTGMP|bA353C18.2 reactive oxygen species modulator 1 protein-coding 244.5-22 chr20 8760508 8760793 + 1.5 NA intron (NM_182734, intron 25 of 32) intron (NM_182734, intron 25 of 32) -70535 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 301.333-8 chr14 81612076 81612441 + 1.5 NA intron (NR_110074, intron 1 of 2) MER50|LTR|ERV1 10803 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 931.166 chr9 84170828 84171893 + 1.5 NA Intergenic Intergenic 107917 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 432.333-5 chr17 64536559 64536974 + 1.5 NA intron (NM_138363, intron 18 of 19) intron (NM_138363, intron 18 of 19) 29789 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 305.667-10 chr4 6717434 6717735 + 1.5 NA TTS (NM_018366) TTS (NM_018366) 1410 NM_018366 55330 Hs.7570 NM_018366 ENSG00000186222 BLOC1S4 BCAS4L|BLOS4|CNO biogenesis of lysosomal organelles complex 1 subunit 4 protein-coding 301-30 chr9 34771988 34772203 + 1.5 NA Intergenic Intergenic -42607 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 714.667 chr8 64382702 64383514 + 1.5 NA non-coding (NR_109792, exon 3 of 3) non-coding (NR_109792, exon 3 of 3) 3959 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 273-4 chr10 90359305 90359580 + 1.5 NA Intergenic Intergenic 181363 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 293-5 chr10 114153272 114153677 + 1.5 NA intron (NM_001321829, intron 4 of 16) L1M4b|LINE|L1 20705 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 361.5 chr1 14785849 14786165 + 1.5 NA intron (NM_201628, intron 1 of 14) MIRb|SINE|MIR -138122 NM_001370229 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 200.333-17 chr18 10544567 10544810 + 1.5 NA intron (NM_003826, intron 8 of 11) MLT1E1A|LTR|ERVL-MaLR 18661 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 281-21 chr5 103808394 103808623 + 1.5 NA Intergenic Intergenic -245719 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 270.833-2 chr1 109980030 109980243 + 1.5 NA Intergenic L1ME4c|LINE|L1 -4629 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 245.667-5 chr12 117587849 117588293 + 1.5 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -226269 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 172.5-15 chr15 68373443 68373589 + 1.5 NA intron (NM_001004439, intron 2 of 29) intron (NM_001004439, intron 2 of 29) 58647 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 252.5-6 chr10 79156196 79156467 + 1.5 NA intron (NM_020338, intron 3 of 24) intron (NM_020338, intron 3 of 24) 87365 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 164.167-35 chr4 46896485 46896679 + 1.5 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 12663 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 244.5-14 chr18 67771318 67771520 + 1.5 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 43403 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 243.834-4 chr15 60479177 60479434 + 1.5 NA promoter-TSS (NM_001018089) promoter-TSS (NM_001018089) 127 NR_120342 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 270.167-12 chr3 2401571 2401777 + 1.5 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 162845 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 248.833-20 chr5 85031037 85031409 + 1.5 NA Intergenic Eulor8|DNA|TcMar? -646343 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 257-9 chr12 21513918 21514219 + 1.5 NA intron (NM_016072, intron 4 of 4) intron (NM_016072, intron 4 of 4) -12228 NM_030572 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 211.834-2 chr10 104120617 104120856 + 1.5 NA Intergenic MIR|SINE|MIR -1322 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 289-23 chr7 18085025 18085273 + 1.5 NA Intergenic LTR82A|LTR|ERVL -1676 NM_001321871 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 273.666-8 chr5 125587816 125588251 + 1.5 NA intron (NR_109887, intron 3 of 3) ERVL-E-int|LTR|ERVL 94772 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 427.667-3 chr12 91342818 91343199 + 1.5 NA Intergenic Intergenic -160191 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 168.667-11 chr12 64943739 64943891 + 1.5 NA intron (NR_146276, intron 3 of 3) intron (NR_146276, intron 3 of 3) 48476 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 271.5-23 chr3 48232906 48233200 + 1.5 NA Intergenic Intergenic -8051 NM_016089 51385 Hs.172602 NM_016089 ENSG00000164048 ZNF589 SZF1 zinc finger protein 589 protein-coding 324.167-16 chr3 190119235 190119705 + 1.5 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 1427 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 240.833-11 chr5 162157456 162157838 + 1.5 NA Intergenic Intergenic 90005 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 194.5-39 chr4 131365277 131365449 + 1.5 NA Intergenic Intergenic -399475 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 290.5-21 chr4 164359499 164359850 + 1.5 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 23581 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 289.5-4 chr13 62682511 62682886 + 1.5 NA intron (NR_047029, intron 7 of 7) intron (NR_047029, intron 7 of 7) 113994 NR_047029 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 301.5-2 chr1 27102424 27102670 + 1.5 NA exon (NM_003047, exon 8 of 12) exon (NM_003047, exon 8 of 12) 52578 NM_003047 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 383.666-2 chr11 105146526 105146797 + 1.5 NA Intergenic AluSx3|SINE|Alu -6892 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 275.167-25 chr8 105040889 105041161 + 1.5 NA Intergenic L1ME1|LINE|L1 -277413 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 284-15 chr2 29259946 29260355 + 1.5 NA intron (NM_004304, intron 11 of 28) HAL1M8|LINE|L1 -36250 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 217-14 chr2 66771836 66772080 + 1.5 NA Intergenic Intergenic -68731 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 197.667-18 chr14 45846526 45846972 + 1.5 NA Intergenic Intergenic -131147 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 315.5-13 chrX 154013747 154014002 + 1.5 NA intron (NM_001025243, intron 10 of 12) intron (NM_001025243, intron 10 of 12) 6028 NM_001025242 3654 Hs.522819 NM_001569 ENSG00000184216 IRAK1 IRAK|pelle interleukin 1 receptor associated kinase 1 protein-coding 223.667-25 chr18 57701448 57701645 + 1.5 NA intron (NM_005603, intron 4 of 27) intron (NM_005603, intron 4 of 27) 71215 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 392.5-6 chr6 90415986 90416305 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 103403 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 267.667-6 chr1 199280657 199280980 + 1.5 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 132220 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 305.667-19 chr7 138136023 138136247 + 1.5 NA Intergenic AluSq4|SINE|Alu 12377 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 230.5-3 chr1 219630922 219631180 + 1.5 NA Intergenic Intergenic -17906 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 348.5-14 chr4 47233646 47234116 + 1.5 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 202314 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 359.167-3 chr12 115960866 115961267 + 1.5 NA 3' UTR (NM_015335, exon 31 of 31) 3' UTR (NM_015335, exon 31 of 31) 187588 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 332-12 chr18 75997456 75997868 + 1.5 NA Intergenic L1MD1|LINE|L1 -125336 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 225.167-9 chr14 35699639 35699833 + 1.5 NA intron (NM_014990, intron 16 of 40) intron (NM_014990, intron 16 of 40) 63195 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 299.833-4 chr10 125434341 125434727 + 1.5 NA Intergenic L1ME1|LINE|L1 -139837 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 222.667-5 chr10 68766562 68767004 + 1.5 NA intron (NR_104262, intron 16 of 23) AluSp|SINE|Alu 11611 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 240.667-11 chr12 76613812 76614202 + 1.5 NA Intergenic L1MD2|LINE|L1 -54236 NM_001003712 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 239.667-28 chr3 43233964 43234433 + 1.5 NA Intergenic MIRb|SINE|MIR -52314 NM_001100594 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 165.333-31 chr4 19637781 19637949 + 1.5 NA Intergenic MIR|SINE|MIR -614040 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 435.167-5 chr5 169548182 169548947 + 1.5 NA Intergenic Intergenic -35209 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 230.5-15 chr18 3923642 3923990 + 1.5 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 38463 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 292.5-2 chr10 25316408 25316770 + 1.5 NA intron (NM_020752, intron 2 of 10) MER119|DNA|hAT-Charlie -140313 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 342.167 chr1 29313687 29314113 + 1.5 NA intron (NM_133177, intron 23 of 30) L1MB5|LINE|L1 36214 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 477.167-4 chr4 139099331 139099822 + 1.5 NA intron (NM_001371336, intron 4 of 8) intron (NM_001371336, intron 4 of 8) -15162 NM_001276457 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 249.333-5 chr12 85041598 85041906 + 1.5 NA intron (NM_001079910, intron 3 of 26) L2a|LINE|L2 5401 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 225.833-18 chr3 142985177 142985434 + 1.5 NA intron (NR_125393, intron 2 of 4) MER33|DNA|hAT-Charlie 16162 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 179.333-38 chr5 13326199 13326402 + 1.5 NA Intergenic Intergenic -293414 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 293-22 chr7 34759473 34759668 + 1.5 NA intron (NR_015356, intron 2 of 4) L1MC4|LINE|L1 -1298 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 219.5-9 chr11 127970577 127970795 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -238080 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 168.167-19 chr2 103547144 103547269 + 1.5 NA Intergenic Intergenic -562777 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 284.833-11 chr2 100432517 100432885 + 1.5 NA Intergenic L1MB8|LINE|L1 -15033 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 251-10 chr18 7857376 7857615 + 1.5 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 290179 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 214.333-22 chr20 44386665 44386888 + 1.5 NA intron (NR_109949, intron 2 of 3) MER20|DNA|hAT-Charlie 8930 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 278.667-20 chr22 31556669 31556928 + 1.5 NA intron (NM_001007467, intron 6 of 32) intron (NM_001007467, intron 6 of 32) 60262 NM_001258327 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 387.667-5 chr20 38681623 38681991 + 1.5 NA Intergenic L1ME3B|LINE|L1 -42679 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 208.5-45 chr8 144257200 144257374 + 1.5 NA intron (NM_001288814, intron 33 of 41) intron (NM_001288814, intron 33 of 41) 5450 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 228.5-38 chrX 65492423 65492685 + 1.5 NA intron (NM_001010888, intron 1 of 4) intron (NM_001010888, intron 1 of 4) 3819 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 306-8 chr18 72587245 72587522 + 1.5 NA Intergenic Intergenic -43041 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 642.833 chr14 91323425 91324189 + 1.5 NA intron (NM_001080414, intron 12 of 29) intron (NM_001080414, intron 12 of 29) -69927 NM_001348437 8111 Hs.8882 NM_003485 ENSG00000119714 GPR68 AI2A6|GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 366.166-2 chr4 123390791 123391085 + 1.5 NA Intergenic Intergenic -5857 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 334.5-13 chr19 49147149 49147469 + 1.5 NA intron (NR_103842, intron 22 of 28) FLAM_A|SINE|Alu 8087 NM_002152 3270 Hs.436885 NM_002152 ENSG00000130528 HRC - histidine rich calcium binding protein protein-coding 281.167-16 chr4 87006305 87006637 + 1.5 NA promoter-TSS (NM_001313959) promoter-TSS (NM_001313959) -517 NM_001313959 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 233.833-14 chr3 121898429 121898720 + 1.5 NA intron (NM_001145998, intron 3 of 20) MER103C|DNA|hAT-Charlie 4173 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 240-53 chr6 76896882 76897236 + 1.5 NA Intergenic Intergenic -303436 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 194-13 chr12 27246372 27246553 + 1.5 NA intron (NM_015000, intron 1 of 13) intron (NM_015000, intron 1 of 13) 2176 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 220.167-13 chr13 41400957 41401162 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -41505 NR_002163 100506759 Hs.507861 NR_002163 OR7E37P OR7E48P|OST193|hg533 olfactory receptor family 7 subfamily E member 37 pseudogene pseudo 399.333-2 chr10 19273387 19273941 + 1.5 NA intron (NM_001142308, intron 19 of 39) L1MC1|LINE|L1 224863 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 245-16 chr2 231304755 231305101 + 1.5 NA intron (NM_001352759, intron 19 of 19) Charlie1|DNA|hAT-Charlie -57780 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 300.001 chr1 226790522 226790823 + 1.5 NA Intergenic AluJb|SINE|Alu -51497 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 178.333-32 chr6 12289235 12289565 + 1.5 NA promoter-TSS (NM_001955) promoter-TSS (NM_001955) -961 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 341.5-9 chr14 67702338 67702645 + 1.5 NA intron (NM_152443, intron 1 of 8) LTR57-int|LTR|ERVL 605 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 349.833-4 chr2 98342026 98342516 + 1.5 NA Intergenic L3|LINE|CR1 -3884 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 223.333-15 chr14 63492462 63492651 + 1.5 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 15682 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 250-37 chr9 71880471 71880720 + 1.5 NA intron (NM_001025780, intron 1 of 3) L1M4|LINE|L1 30650 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 498.001 chr16 30650386 30651061 + 1.5 NA promoter-TSS (NM_001320464) promoter-TSS (NM_001320464) -55 NM_001320464 78994 Hs.293629 NM_024031 ENSG00000156858 PRR14 - proline rich 14 protein-coding 261.5-7 chr1 191007576 191007810 + 1.5 NA Intergenic Intergenic 220805 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 597.167-2 chr20 44210365 44211157 + 1.5 NA promoter-TSS (NR_038339) promoter-TSS (NR_038339) 10 NM_016470 51526 Hs.75798 NM_016470 ENSG00000132823 OSER1 C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1 oxidative stress responsive serine rich 1 protein-coding 698.334-2 chr8 124044246 124045104 + 1.5 NA intron (NM_001039112, intron 20 of 40) intron (NM_001039112, intron 20 of 40) -3893 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 475.333-2 chr1 237442914 237443434 + 1.5 NA intron (NM_001035, intron 13 of 104) intron (NM_001035, intron 13 of 104) -27945 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 285.167-16 chr6 101289814 101290089 + 1.5 NA Intergenic Intergenic -109034 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 251.5-33 chr8 132682523 132682827 + 1.5 NA Intergenic Intergenic -7130 NM_001321961 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 258-25 chr4 2262129 2262332 + 1.5 NA promoter-TSS (NM_006454) promoter-TSS (NM_006454) -121 NM_006454 10608 Hs.655020 NM_006454 ENSG00000123933 MXD4 MAD4|MST149|MSTP149|bHLHc12 MAX dimerization protein 4 protein-coding 225.834-6 chr11 92555863 92556171 + 1.5 NA intron (NM_001008781, intron 2 of 24) MIR|SINE|MIR 203921 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 211-21 chr19 57915351 57915520 + 1.5 NA intron (NM_152475, intron 1 of 2) intron (NM_152475, intron 1 of 2) 1157 NM_152475 147687 Hs.567710 NM_152475 ENSG00000173480 ZNF417 - zinc finger protein 417 protein-coding 261.167-19 chr6 162958105 162958399 + 1.5 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 95909 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 257.667-19 chr5 90602571 90602869 + 1.5 NA intron (NR_003149, intron 1 of 89) L1MC3|LINE|L1 43923 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 418.333-4 chr8 136209681 136210034 + 1.5 NA Intergenic Intergenic -320941 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 273.5-14 chr2 125253190 125253528 + 1.5 NA Intergenic L1M5|LINE|L1 864626 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 281.667-18 chr22 37863423 37863656 + 1.5 NA intron (NM_001363785, intron 6 of 11) intron (NM_001363785, intron 6 of 11) 14120 NM_001363785 51386 Hs.446852 NM_016091 ENSG00000100129 EIF3L EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005 eukaryotic translation initiation factor 3 subunit L protein-coding 208.333-11 chr11 86571248 86571726 + 1.5 NA intron (NM_001014811, intron 1 of 13) MER3|DNA|hAT-Charlie 100711 NR_147831 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 223.167-16 chr4 81632205 81632472 + 1.5 NA Intergenic Intergenic -160431 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 574.334 chr5 41560747 41561203 + 1.5 NA Intergenic L1MB3|LINE|L1 -50374 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 308-6 chr13 75879930 75880260 + 1.5 NA intron (NR_126373, intron 3 of 3) intron (NR_126373, intron 3 of 3) 3209 NR_126373 104326189 Hs.671216 NR_126373 ENSG00000223458 LMO7DN-IT1 C13orf45-IT1|TCONS_00021569 LMO7DN intronic transcript 1 ncRNA 494-6 chr7 27712533 27712907 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -26653 NM_001206901 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 329.333-2 chr12 2806466 2806900 + 1.5 NA intron (NR_146318, intron 1 of 1) AluSx|SINE|Alu -5985 NR_130744 55846 Hs.239 NM_018463 ENSG00000111203 ITFG2 FGGAP1|MDS028 integrin alpha FG-GAP repeat containing 2 protein-coding 258-3 chr10 24449942 24450205 + 1.5 NA intron (NM_001321681, intron 1 of 13) intron (NM_001321681, intron 1 of 13) 659 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 267.333-26 chr7 128901878 128902294 + 1.5 NA intron (NM_001366122, intron 8 of 39) FLAM_C|SINE|Alu 8623 NM_199349 375616 Hs.371746 NM_199349 ENSG00000135253 KCP CRIM2|KCP1|NET67 kielin cysteine rich BMP regulator protein-coding 242.5-24 chr2 61763241 61763448 + 1.5 NA Intergenic L1ME4a|LINE|L1 90716 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 243.333 chr1 44555666 44555892 + 1.5 NA intron (NM_001319957, intron 1 of 13) L2c|LINE|L2 10286 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 252.5-8 chr12 21847494 21847811 + 1.5 NA intron (NM_005691, intron 23 of 37) intron (NM_005691, intron 23 of 37) -72946 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 290-12 chr3 38506342 38506682 + 1.5 NA intron (NM_005107, intron 4 of 5) L1ME4c|LINE|L1 10172 NM_005107 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 292.667-14 chr3 98185290 98185653 + 1.5 NA Intergenic HUERS-P3b-int|LTR|ERV1 16771 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 367-14 chr2 117069430 117069791 + 1.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -745081 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 346.667 chr1 7595609 7596129 + 1.5 NA intron (NM_001349608, intron 5 of 21) intron (NM_001349608, intron 5 of 21) -73861 NM_001349614 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 320.167-4 chr14 67942862 67943282 + 1.5 NA intron (NM_133509, intron 7 of 10) MARNA|DNA|TcMar-Mariner 119480 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 291.333-2 chr1 206589007 206589251 + 1.5 NA 3' UTR (NM_182663, exon 6 of 6) 3' UTR (NM_182663, exon 6 of 6) 23336 NM_006893 1939 Hs.497581 NM_006893 ENSG00000143486 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 209.333-9 chr1 191922153 191922374 + 1.5 NA Intergenic Intergenic -236199 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 361.5-14 chr8 71971919 71972237 + 1.5 NA intron (NR_033652, intron 4 of 4) L1ME3Cz|LINE|L1 103506 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 208 chr1 47715665 47716072 + 1.5 NA Intergenic Intergenic -278551 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 296.5-7 chr11 69442043 69442326 + 1.5 NA Intergenic Intergenic 16529 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 328.001-2 chr4 129572664 129572995 + 1.5 NA Intergenic Intergenic 198649 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 440.167 chr1 35481148 35481687 + 1.5 NA intron (NM_024874, intron 3 of 20) L1ME1|LINE|L1 75986 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 188.833-3 chr1 196620460 196620651 + 1.5 NA Intergenic Intergenic -12115 NM_001287820 343450 Hs.657046 NM_198503 ENSG00000162687 KCNT2 EIEE57|KCa4.2|SLICK|SLO2.1 potassium sodium-activated channel subfamily T member 2 protein-coding 186.167-12 chr19 6611624 6611813 + 1.5 NA Intergenic Intergenic -20568 NM_001330332 970 Hs.501497 NM_001252 ENSG00000125726 CD70 CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A CD70 molecule protein-coding 370.333-12 chr8 81227520 81228056 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -52748 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 395.334 chr10 65535838 65536255 + 1.5 NA Intergenic L1M5|LINE|L1 -35379 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 216.5-28 chr2 189461758 189461936 + 1.5 NA intron (NM_001303096, intron 9 of 21) L1MEg|LINE|L1 20373 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 254.167 chr1 5727243 5727472 + 1.5 NA Intergenic L2b|LINE|L2 135384 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 201-7 chr13 110943849 110944052 + 1.5 NA Intergenic Intergenic -22077 NR_126378 104355135 Hs.649708 NR_126378 LINC00431 - long intergenic non-protein coding RNA 431 ncRNA 262.001-4 chr6 71045070 71045404 + 1.5 NA Intergenic Intergenic -88177 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 301.667-2 chr10 44159426 44159731 + 1.5 NA Intergenic L1MDa|LINE|L1 -133172 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 326-8 chr2 201855313 201855775 + 1.5 NA intron (NM_001366386, intron 10 of 13) intron (NM_001366386, intron 10 of 13) 48965 NM_001261435 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 230.833-14 chr4 138188370 138188752 + 1.5 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 53788 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 175.167-18 chr16 61946868 61947081 + 1.5 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 89464 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 376.501-2 chr20 16803109 16803649 + 1.5 NA Intergenic Intergenic 55026 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 201-15 chr17 27680839 27681002 + 1.5 NA Intergenic Intergenic 49732 NM_002308 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 325.333-8 chr22 17284259 17284700 + 1.5 NA Intergenic Intergenic -17746 NR_038398 27442 Hs.517394 NR_038398 ENSG00000241832 CECR3 - cat eye syndrome chromosome region, candidate 3 ncRNA 438.5-7 chr5 100546022 100546447 + 1.5 NA intron (NM_198507, intron 1 of 2) intron (NM_198507, intron 1 of 2) 10860 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 204-46 chr9 93920130 93920379 + 1.5 NA Intergenic Intergenic 35101 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 230.5-27 chr5 81909985 81910215 + 1.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -61923 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 168.333-13 chr11 127380824 127381028 + 1.5 NA Intergenic MLT2B2|LTR|ERVL 109856 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 417.167-7 chr5 180718763 180719313 + 1.5 NA Intergenic Intergenic 21020 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 271-24 chr6 41702501 41702873 + 1.5 NA intron (NM_001167827, intron 1 of 8) intron (NM_001167827, intron 1 of 8) 30923 NR_162107 113218489 NR_162107 MIR10398 - microRNA 10398 ncRNA 248.333-12 chr14 88646083 88646296 + 1.5 NA intron (NM_183387, intron 28 of 42) intron (NM_183387, intron 28 of 42) 51769 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 186.833-6 chr15 45279209 45279417 + 1.5 NA promoter-TSS (NR_120335) promoter-TSS (NR_120335) -91 NR_120335 101928414 NR_120335 ENSG00000259520 LOC101928414 - uncharacterized LOC101928414 ncRNA 340.5-12 chrX 72277261 72277560 + 1.5 NA promoter-TSS (NM_001007) promoter-TSS (NM_001007) -162 NM_001007 6191 Hs.118076 NM_001007 ENSG00000198034 RPS4X CCG2|DXS306|RPS4|S4|SCAR|SCR10 ribosomal protein S4 X-linked protein-coding 167.833-5 chr10 53650115 53650308 + 1.5 NA Intergenic Intergenic -836019 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 200-48 chr8 132760657 132760840 + 1.5 NA promoter-TSS (NM_001145153) promoter-TSS (NM_001145153) -166 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 296.167-9 chr17 60284401 60284729 + 1.5 NA intron (NM_032582, intron 5 of 33) intron (NM_032582, intron 5 of 33) -52920 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 220.5-34 chr4 54851601 54851877 + 1.5 NA Intergenic Intergenic 193811 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 216.667-35 chr4 185493825 185494285 + 1.5 NA Intergenic L1MB4|LINE|L1 -22322 NM_001145411 256309 Hs.41101 NM_152775 ENSG00000168491 CCDC110 CT52|KM-HN-1|KMHN1 coiled-coil domain containing 110 protein-coding 280.5-15 chr3 47789722 47789933 + 1.5 NA Intergenic AluSq10|SINE|Alu -7934 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 323.001 chr10 11092124 11092421 + 1.5 NA intron (NR_046108, intron 4 of 6) intron (NR_046108, intron 4 of 6) 13216 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 291.5-4 chr10 78725728 78726034 + 1.5 NA Intergenic L1MEc|LINE|L1 341567 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 540 chr1 109193542 109194081 + 1.5 NA intron (NM_001284352, intron 13 of 20) intron (NM_001284352, intron 13 of 20) 7262 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 286.501 chr15 44087802 44088032 + 1.5 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) 106529 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 300.334-3 chr12 7107646 7107896 + 1.5 NA promoter-TSS (NR_026947) promoter-TSS (NR_026947) -537 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 341.833 chr15 82793822 82794098 + 1.5 NA intron (NM_001007122, intron 1 of 12) L1MB8|LINE|L1 12109 NM_001281806 123722 Hs.719372 NM_001007122 ENSG00000186628 FSD2 SPRYD1 fibronectin type III and SPRY domain containing 2 protein-coding 194-7 chr10 32311507 32311678 + 1.5 NA intron (NM_001282391, intron 1 of 13) intron (NM_001282391, intron 1 of 13) 35566 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 198.5-33 chr4 59663089 59663253 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie 649598 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 482.333-2 chr3 99641882 99642263 + 1.5 NA intron (NM_020351, intron 1 of 3) intron (NM_020351, intron 1 of 3) 3478 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 522-5 chr4 160899874 160900309 + 1.5 NA Intergenic Intergenic -1122307 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 262-27 chr7 104272721 104272916 + 1.5 NA Intergenic Intergenic -55838 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 293.167-6 chr15 79924815 79925065 + 1.5 NA TTS (NR_028330) TTS (NR_028330) -1186 NR_037653 400410 Hs.729127 NM_001100879 ENSG00000180953 ST20 HCCS-1 suppressor of tumorigenicity 20 protein-coding 351.833 chr1 197695304 197695672 + 1.5 NA intron (NR_125340, intron 3 of 19) intron (NR_125340, intron 3 of 19) 79992 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 192-23 chr20 55474389 55474571 + 1.5 NA Intergenic Helitron3Na_Mam|RC|Helitron -47283 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 337.834-4 chr8 87697911 87698270 + 1.5 NA Intergenic MamGypsy2-I|LTR|Gypsy 175925 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 249.167-16 chr20 49451924 49452108 + 1.5 NA intron (NM_004975, intron 1 of 1) L2a|LINE|L2 30652 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 284.5-14 chr22 39292703 39293007 + 1.5 NA Intergenic Intergenic 21056 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 208.167-25 chr8 64058248 64058509 + 1.5 NA intron (NR_125826, intron 4 of 4) Tigger3b|DNA|TcMar-Tigger 288948 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 252.833-6 chr14 26463471 26463684 + 1.5 NA intron (NM_006489, intron 3 of 3) L1M5|LINE|L1 89853 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 247.334-2 chr6 9705350 9705590 + 1.5 NA Intergenic Intergenic -699032 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 174.167-2 chr1 102029928 102030153 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -32806 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 481.333-3 chr5 104455753 104456230 + 1.5 NA Intergenic Intergenic -643483 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 483.5-5 chr9 16103025 16103530 + 1.5 NA Intergenic Intergenic 149830 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 396.833-2 chr1 151998243 151998666 + 1.5 NA Intergenic Intergenic -4595 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 356.5-10 chrX 41206318 41206632 + 1.5 NA intron (NM_001039591, intron 32 of 44) L1MC5|LINE|L1 -69264 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 248.667-2 chr1 213950158 213950477 + 1.5 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 25568 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 219.333-24 chr2 70855604 70855844 + 1.5 NA Intergenic L1MC4|LINE|L1 -19908 NM_015717 50489 Hs.199731 NM_015717 ENSG00000116031 CD207 CLEC4K CD207 molecule protein-coding 203.333-43 chr4 63434146 63434570 + 1.5 NA Intergenic Intergenic 975092 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 485.999 chr19 33794966 33795506 + 1.5 NA Intergenic Intergenic -1634 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 192.5-39 chr4 187432920 187433154 + 1.5 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 62389 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 182-46 chr7 155380104 155380353 + 1.5 NA Intergenic Intergenic -1848 NR_147174 100286906 Hs.568111 NR_147174 LOC100286906 - uncharacterized LOC100286906 ncRNA 639.334 chr12 67943161 67943914 + 1.5 NA intron (NR_120456, intron 2 of 2) intron (NR_120456, intron 2 of 2) 14302 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 221.5-2 chr1 156282594 156282946 + 1.5 NA promoter-TSS (NR_026678) promoter-TSS (NR_026678) 55 NM_015327 23381 Hs.516837 NM_015327 ENSG00000198952 SMG5 EST1B|LPTS-RP1|LPTSRP1|SMG-5 SMG5 nonsense mediated mRNA decay factor protein-coding 323.667-5 chr1 151047794 151048039 + 1.5 NA TTS (NM_001159642) TTS (NM_001159642) 165 NM_017860 54964 Hs.549171 NM_017860 ENSG00000143443 C1orf56 MENT chromosome 1 open reading frame 56 protein-coding 175.5-45 chr5 145860154 145860529 + 1.5 NA intron (NM_001080516, intron 2 of 2) MIR|SINE|MIR 12627 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin and cysteine rich domain containing 2 protein-coding 548.834-2 chr10 34903075 34903641 + 1.5 NA Intergenic L1MEa|LINE|L1 87590 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 424.5-15 chr9 85314047 85314517 + 1.5 NA Intergenic L1ME3G|LINE|L1 427747 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 335.333-11 chr7 82873482 82874068 + 1.5 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 289109 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 236.5-32 chr7 112796270 112796477 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -5950 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 256-19 chr22 27852355 27852660 + 1.5 NA 3' UTR (NM_001284277, exon 11 of 11) 3' UTR (NM_001284277, exon 11 of 11) -50751 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 189-17 chr14 28441392 28441547 + 1.5 NA Intergenic MER66-int|LTR|ERV1 323850 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 356-6 chr11 84488732 84489143 + 1.5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -171598 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 197.5-20 chr20 42411621 42411807 + 1.5 NA intron (NM_133170, intron 9 of 31) L1MC|LINE|L1 -273769 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 420.833-2 chr14 31230272 31230692 + 1.5 NA Intergenic AluSz|SINE|Alu -22689 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 301.667-4 chr12 24771507 24771982 + 1.5 NA Intergenic Intergenic 130478 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 243.5 chr1 25549681 25549904 + 1.5 NA intron (NM_015627, intron 1 of 8) intron (NM_015627, intron 1 of 8) 6207 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 209.667-6 chr11 18836478 18836693 + 1.5 NA Intergenic Intergenic -43864 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 262.167-14 chr8 55313130 55313506 + 1.5 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 142003 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 278.5-4 chr10 72571963 72572290 + 1.5 NA intron (NM_006077, intron 1 of 11) MIR3|SINE|MIR -48140 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 298.167-11 chr5 66050880 66051140 + 1.5 NA intron (NM_001253697, intron 20 of 25) intron (NM_001253697, intron 20 of 25) -93290 NM_001323535 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 238.833-12 chr20 52397003 52397211 + 1.5 NA Intergenic Intergenic -205122 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 346.5-2 chr13 48126726 48127254 + 1.5 NA Intergenic Intergenic -31849 NM_001270629 29079 Hs.181112 NM_014166 ENSG00000136146 MED4 ARC36|DRIP36|HSPC126|TRAP36|VDRIP mediator complex subunit 4 protein-coding 219-6 chr14 25496257 25496436 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -446049 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 306.667 chr1 40603870 40604464 + 1.5 NA Intergenic L1M5|LINE|L1 61515 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 393-3 chr2 225551122 225551549 + 1.5 NA intron (NM_001371273, intron 4 of 7) MLT1H2|LTR|ERVL-MaLR 150449 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 302.334-4 chr12 24424060 24424285 + 1.5 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 138319 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 425-8 chr6 121159850 121160389 + 1.5 NA intron (NR_104452, intron 26 of 35) intron (NR_104452, intron 26 of 35) 174361 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 376-3 chr14 43747539 43747857 + 1.5 NA Intergenic L1MEi|LINE|L1 759585 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 435.167-2 chr13 49281239 49281830 + 1.5 NA intron (NR_036439, intron 7 of 8) MER1B|DNA|hAT-Charlie 33609 NM_001193478 81602 Hs.388220 NM_030911 ENSG00000102543 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 276.333-19 chr9 135057869 135058302 + 1.5 NA Intergenic L1MEf|LINE|L1 -17420 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 202.5-6 chr10 8990018 8990266 + 1.5 NA Intergenic Intergenic 92153 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 333.166 chr10 91923419 91923867 + 1.5 NA promoter-TSS (NM_003972) promoter-TSS (NM_003972) -127 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 327.666-4 chr4 16278308 16278610 + 1.5 NA Intergenic Intergenic 51796 NR_027696 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 214-9 chr12 8138492 8138671 + 1.5 NA TTS (NM_016184) TTS (NM_016184) -3729 NR_036440 642559 Hs.646545 NR_036440 ENSG00000235602 POU5F1P3 OCT3|OCT4|OCT4-pg3|OTF-3|OTF3|OTF3L|Oct-3|Oct-4|POU5F1|POU5F1L|POU5FLC12 POU class 5 homeobox 1 pseudogene 3 pseudo 324.666-2 chr10 68302448 68302815 + 1.5 NA intron (NM_001033083, intron 2 of 8) AluJr|SINE|Alu -29062 NM_001322445 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 221-26 chr4 36376478 36376738 + 1.5 NA Intergenic Intergenic 49820 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 299-14 chr3 185288854 185289217 + 1.5 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) 6074 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 220.5-21 chr2 9339746 9340036 + 1.5 NA intron (NM_003887, intron 9 of 27) intron (NM_003887, intron 9 of 27) 82700 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 199.5-14 chr13 92023304 92023468 + 1.5 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 328821 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 298.5-5 chr11 20415651 20415894 + 1.5 NA intron (NM_005788, intron 9 of 15) intron (NM_005788, intron 9 of 15) 28056 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 317.333-12 chr5 13174935 13175341 + 1.5 NA Intergenic L2b|LINE|L2 -142252 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 337.333-3 chr1 96159742 96160064 + 1.5 NA Intergenic MER96B|DNA|hAT-Tip100 167835 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 181.333-7 chr14 70123711 70123926 + 1.5 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -43601 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 441.5-2 chr12 10385611 10385961 + 1.5 NA intron (NR_120430, intron 3 of 3) L1MA5|LINE|L1 4255 NM_007360 22914 Hs.387787 NM_007360 ENSG00000213809 KLRK1 CD314|D12S2489E|KLR|NKG2-D|NKG2D killer cell lectin like receptor K1 protein-coding 175.833-16 chr15 24295345 24295478 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -125463 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 206.833-22 chr6 144158004 144158554 + 1.5 NA intron (NM_003764, intron 1 of 1) intron (NM_003764, intron 1 of 1) 7762 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 167-26 chr3 126286943 126287063 + 1.5 NA Intergenic Intergenic 70405 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 262.667-2 chr1 15046357 15046940 + 1.5 NA intron (NM_001370231, intron 5 of 8) intron (NM_001370231, intron 5 of 8) 100729 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 395.5-5 chr5 66833456 66833744 + 1.5 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 4827 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 286.167-19 chr6 167223639 167224074 + 1.5 NA Intergenic Intergenic -4444 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 227-24 chr3 151580707 151580891 + 1.5 NA Intergenic Intergenic -14804 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 316.333-14 chr2 238720081 238720356 + 1.5 NA Intergenic Intergenic 127689 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 364.5-4 chr14 36746073 36746540 + 1.5 NA intron (NM_001171170, intron 3 of 10) L1PB4|LINE|L1 88738 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 405-8 chr19 1401542 1401848 + 1.5 NA promoter-TSS (NM_000156) promoter-TSS (NM_000156) -153 NM_000156 2593 Hs.81131 NM_000156 ENSG00000130005 GAMT CCDS2|HEL-S-20|PIG2|TP53I2 guanidinoacetate N-methyltransferase protein-coding 309.5-7 chr18 50733435 50733772 + 1.5 NA Intergenic Intergenic 86413 NM_001127175 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 268.5-4 chr10 55146530 55146859 + 1.5 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -345403 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 357.667-5 chr15 59444580 59445068 + 1.5 NA intron (NM_152450, intron 1 of 8) intron (NM_152450, intron 1 of 8) 6638 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 185.833-25 chr5 38781117 38781312 + 1.5 NA intron (NR_109951, intron 2 of 3) MLT1D|LTR|ERVL-MaLR -60941 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 353.334 chr10 15744224 15744705 + 1.5 NA Intergenic Intergenic -24129 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 358.5-4 chr12 1287795 1288333 + 1.5 NA intron (NR_027948, intron 14 of 19) L1MA4|LINE|L1 -212427 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 371.833-6 chr3 134485707 134486031 + 1.5 NA promoter-TSS (NM_001353125) promoter-TSS (NM_001353125) 116 NM_015391 25847 Hs.106909 NM_015391 ENSG00000129055 ANAPC13 APC13|SWM1 anaphase promoting complex subunit 13 protein-coding 262.5-31 chr8 132716598 132716837 + 1.5 NA intron (NM_144649, intron 7 of 9) intron (NM_144649, intron 7 of 9) -41172 NM_001321961 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 400.667-4 chr19 44039874 44040335 + 1.5 NA Intergenic L1M4|LINE|L1 -11932 NM_013361 7766 Hs.720813 NM_013361 ENSG00000178386 ZNF223 - zinc finger protein 223 protein-coding 359.833-4 chr6 92566591 92566966 + 1.5 NA Intergenic Intergenic 852781 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 445.334-6 chr5 150559508 150559858 + 1.5 NA Intergenic Intergenic -41393 NM_001166208 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 223.833-16 chr5 55223723 55224009 + 1.5 NA intron (NM_001190787, intron 3 of 6) intron (NM_001190787, intron 3 of 6) 3449 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 282.167-19 chr7 81227979 81228247 + 1.5 NA Intergenic Intergenic -305724 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 184.5-36 chr3 160554354 160554517 + 1.5 NA intron (NM_002268, intron 1 of 16) L1MB7|LINE|L1 11136 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 325.5-22 chr9 96651649 96652061 + 1.5 NA intron (NM_153698, intron 2 of 5) intron (NM_153698, intron 2 of 5) 3462 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 883.334 chr19 53980552 53981385 + 1.5 NA intron (NM_031895, intron 3 of 3) intron (NM_031895, intron 3 of 3) -1339 NR_030632 100126325 NR_030632 ENSG00000284583 MIR935 MIRN935|hsa-mir-935|mir-935 microRNA 935 ncRNA 350.334-5 chr14 50533786 50534144 + 1.5 NA intron (NM_001127713, intron 1 of 13) UCON8|DNA|DNA 883 NM_001127713 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 199.667-5 chr1 184810635 184810824 + 1.5 NA intron (NM_052966, intron 9 of 13) MER57A1|LTR|ERV1 -55871 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 411.667-3 chr14 61183157 61183667 + 1.5 NA Intergenic Intergenic 97926 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 371.333-7 chr6 50523692 50524468 + 1.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -189464 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 200.833-10 chr12 13389975 13390299 + 1.5 NA Intergenic Intergenic -13392 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 361.333-7 chr6 38913430 38913862 + 1.5 NA intron (NM_001371, intron 65 of 91) intron (NM_001371, intron 65 of 91) 39461 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 302.166-3 chrX 86765056 86765266 + 1.5 NA intron (NM_001139515, intron 7 of 11) L1PA16|LINE|L1 502193 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 286-14 chr3 102433172 102433372 + 1.5 NA Intergenic MIR|SINE|MIR -1743 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 202.167-22 chr2 157096588 157096813 + 1.5 NA Intergenic L1MEc|LINE|L1 -161005 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 321.167-16 chr4 30702851 30703129 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -17379 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 392.5-3 chr10 52819834 52820218 + 1.5 NA Intergenic Intergenic -48326 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 188.833-15 chr18 66755893 66756076 + 1.5 NA Intergenic L1M5|LINE|L1 -151894 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 414.833-8 chr7 14710637 14711110 + 1.5 NA intron (NM_001350717, intron 6 of 24) L1MEg|LINE|L1 130577 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 581-4 chr6 107704095 107704847 + 1.5 NA 3' UTR (NM_198081, exon 8 of 8) 3' UTR (NM_198081, exon 8 of 8) 27679 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 299.5-14 chr3 160920886 160921180 + 1.5 NA intron (NR_134243, intron 2 of 5) intron (NR_134243, intron 2 of 5) 50435 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 312.5-15 chr4 43381258 43381581 + 1.5 NA Intergenic Intergenic 111124 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 529.666 chr12 82628030 82628482 + 1.5 NA Intergenic L1M3f|LINE|L1 -58650 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 234.833-25 chr8 83822156 83822693 + 1.5 NA Intergenic Intergenic -360363 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 172.5-3 chr10 28269101 28269273 + 1.5 NA intron (NM_173496, intron 2 of 18) intron (NM_173496, intron 2 of 18) 12936 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 309.667 chr1 116142861 116143252 + 1.5 NA Intergenic L1ME3D|LINE|L1 31301 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 304.333-13 chr8 47148380 47148702 + 1.5 NA Intergenic L1PA16|LINE|L1 -40766 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 329.333-11 chr3 136042871 136043150 + 1.5 NA intron (NM_181897, intron 3 of 12) intron (NM_181897, intron 3 of 12) 20268 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 423.667-3 chr14 101177647 101178118 + 1.5 NA Intergenic Intergenic 57026 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 216.333-25 chr2 226855743 226856020 + 1.5 NA intron (NM_001167608, intron 3 of 8) intron (NM_001167608, intron 3 of 8) 19827 NM_001349071 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 322.834 chr10 97081789 97082050 + 1.5 NA intron (NM_003061, intron 4 of 36) intron (NM_003061, intron 4 of 36) -20837 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 166.167-35 chr7 32555871 32556148 + 1.5 NA intron (NM_015060, intron 8 of 15) intron (NM_015060, intron 8 of 15) 60520 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 410-11 chr3 157855250 157855671 + 1.5 NA Intergenic Intergenic 250703 NM_001163678 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 374.5-5 chr2 193155060 193155595 + 1.5 NA Intergenic Intergenic 405482 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 291-19 chr3 147536177 147536479 + 1.5 NA Intergenic Intergenic 115001 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 342.5 chr11 46389144 46389605 + 1.5 NA intron (NM_001366692, intron 1 of 1) CpG 2240 NM_000741 1132 Hs.248100 NM_000741 ENSG00000180720 CHRM4 HM4|M4R cholinergic receptor muscarinic 4 protein-coding 175.5 chr1 9271868 9272095 + 1.5 NA TTS (NM_004285) TTS (NM_004285) -20913 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 171.5-39 chr5 173764409 173764625 + 1.5 NA Intergenic Intergenic -18308 NR_108027 101928136 Hs.449267 NR_108027 ENSG00000253686 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 354.833 chr10 31003164 31003657 + 1.5 NA intron (NM_001143766, intron 1 of 7) intron (NM_001143766, intron 1 of 7) -3893 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 231.834-5 chr15 68743377 68743695 + 1.5 NA Intergenic Intergenic 58389 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 311.167-13 chr8 103933972 103934278 + 1.5 NA intron (NR_145711, intron 9 of 21) intron (NR_145711, intron 9 of 21) 114905 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 378-6 chr11 60619275 60619731 + 1.5 NA intron (NR_026946, intron 1 of 6) intron (NR_026946, intron 1 of 6) 3752 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 354.5-8 chr5 115619832 115620185 + 1.5 NA intron (NR_109874, intron 3 of 3) intron (NR_109874, intron 3 of 3) 6028 NM_001164468 100302736 NM_001164468 ENSG00000251201 TMED7-TICAM2 MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM TMED7-TICAM2 readthrough protein-coding 200.833-23 chr4 130803455 130803910 + 1.5 NA Intergenic L1PB4|LINE|L1 427321 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 390-4 chr17 33200312 33200837 + 1.5 NA intron (NM_001094, intron 1 of 9) L2a|LINE|L2 92414 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 279.5-8 chr17 59742760 59743148 + 1.5 NA intron (NM_001329401, intron 4 of 9) MER1B|DNA|hAT-Charlie 35300 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 261.833-11 chr2 106970558 106970918 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -83629 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 395.667 chr11 24922257 24922692 + 1.5 NA intron (NM_001009909, intron 7 of 11) intron (NM_001009909, intron 7 of 11) 425421 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 297.333 chr1 56835872 56836167 + 1.5 NA Intergenic MLT1M|LTR|ERVL-MaLR -16615 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 347.333-12 chr22 43053334 43053727 + 1.5 NA intron (NR_027779, intron 9 of 11) intron (NR_027779, intron 9 of 11) 14945 NR_125362 100506679 Hs.706553 NR_125362 ENSG00000230319 LOC100506679 - uncharacterized LOC100506679 ncRNA 270.667-10 chr18 361207 361598 + 1.5 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -93355 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 445.5-2 chr14 34098661 34099158 + 1.5 NA Intergenic Intergenic -147835 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 420.667 chr1 119366118 119366988 + 1.5 NA Intergenic Intergenic -2232 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 300.833-8 chr4 175365117 175365326 + 1.5 NA Intergenic Intergenic 422455 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 426.167-8 chr3 69425415 69425886 + 1.5 NA Intergenic Intergenic -39562 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 171.167-41 chrX 138166875 138167056 + 1.5 NA Intergenic L1MD3|LINE|L1 500828 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 361.5-2 chr1 18234707 18235060 + 1.5 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 127085 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 365.5-2 chr1 90983829 90984105 + 1.5 NA intron (NM_201269, intron 1 of 5) MLT1D|LTR|ERVL-MaLR 37541 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 313-7 chr4 35655555 35655784 + 1.5 NA Intergenic AluJb|SINE|Alu 588270 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 308.5-11 chr16 13767260 13767592 + 1.5 NA Intergenic Intergenic -152731 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 246.833-7 chr2 34209300 34209520 + 1.5 NA intron (NR_126403, intron 4 of 5) L1PA13|LINE|L1 142184 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 170.833-34 chr7 28073556 28073676 + 1.5 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -106841 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 594.834-4 chr5 18772225 18772951 + 1.5 NA Intergenic Intergenic 965314 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 168.667-45 chr6 105627561 105627769 + 1.5 NA Intergenic Intergenic -224583 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 258.5-12 chr14 23810572 23810814 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -143077 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 279.834-2 chr10 58869088 58869453 + 1.5 NA Intergenic 7SK|RNA|RNA -130248 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 214-20 chr16 47946509 47946752 + 1.5 NA Intergenic Intergenic -19059 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 174-36 chr3 86585547 86585720 + 1.5 NA Intergenic Intergenic 103690 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 268-36 chr8 109059208 109059558 + 1.5 NA Intergenic Intergenic -27245 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 191-30 chr20 9301905 9302125 + 1.5 NA intron (NM_182797, intron 1 of 35) intron (NM_182797, intron 1 of 35) -5785 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 391.5-8 chr3 164390026 164390495 + 1.5 NA Intergenic Intergenic -218704 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 278-33 chr9 99692360 99692641 + 1.5 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 127389 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 323.167-2 chr20 49533251 49533573 + 1.5 NA intron (NM_000961, intron 5 of 9) Charlie16a|DNA|hAT-Charlie 34725 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 510.5-4 chr7 32142697 32143242 + 1.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -71533 NM_001322055 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 335.833-10 chr6 134802607 134802935 + 1.5 NA Intergenic L2b|LINE|L2 147330 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 231.167-24 chr4 122833788 122834035 + 1.5 NA intron (NM_001361665, intron 1 of 2) intron (NM_001361665, intron 1 of 2) 7080 NM_001361665 2247 Hs.284244 NM_002006 ENSG00000138685 FGF2 BFGF|FGF-2|FGFB|HBGF-2 fibroblast growth factor 2 protein-coding 278.5-8 chr13 46010327 46010565 + 1.5 NA exon (NM_015070, exon 7 of 17) exon (NM_015070, exon 7 of 17) 42300 NM_001076788 23091 Hs.136102 NM_015070 ENSG00000123200 ZC3H13 KIAA0853|Xio zinc finger CCCH-type containing 13 protein-coding 209.833-24 chr8 114020716 114020926 + 1.5 NA Intergenic Intergenic -583882 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 371.5-4 chr11 27497434 27497919 + 1.5 NA 3' UTR (NM_018362, exon 5 of 5) 3' UTR (NM_018362, exon 5 of 5) 9093 NM_018362 55327 Hs.91393 NM_018362 ENSG00000148943 LIN7C LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3 lin-7 homolog C, crumbs cell polarity complex component protein-coding 171.667-37 chr3 33729451 33729824 + 1.5 NA Intergenic MIR|SINE|MIR -11383 NM_001365628 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 167.167-6 chr10 22428409 22428585 + 1.5 NA Intergenic Intergenic 9432 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 436.5-3 chr14 65465372 65466036 + 1.5 NA intron (NM_004480, intron 2 of 9) L1MCa|LINE|L1 -5398 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 165.333-23 chr18 10543357 10543542 + 1.5 NA intron (NM_003826, intron 8 of 11) intron (NM_003826, intron 8 of 11) 17422 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 301.5-16 chr5 5187247 5187509 + 1.5 NA intron (NM_139056, intron 5 of 22) intron (NM_139056, intron 5 of 22) 47048 NR_136935 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 352-2 chr1 109591233 109591699 + 1.5 NA intron (NM_006496, intron 7 of 8) intron (NM_006496, intron 7 of 8) -7427 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 333.667-12 chr7 75739036 75739412 + 1.5 NA promoter-TSS (NM_001243198) promoter-TSS (NM_001243198) -283 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 326.5-17 chr8 116244601 116244962 + 1.5 NA intron (NR_046215, intron 4 of 13) L3|LINE|CR1 80278 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 176-5 chr10 27239530 27239701 + 1.5 NA intron (NM_001271512, intron 1 of 11) A-rich|Low_complexity|Low_complexity 871 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 194.334-9 chr6 156138535 156138970 + 1.5 NA Intergenic L1M3|LINE|L1 191955 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 333-10 chr4 12636757 12637084 + 1.5 NA Intergenic Intergenic 413469 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 215.5-14 chr4 119113358 119113717 + 1.5 NA Intergenic Intergenic -22247 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 307.333-8 chr2 100548117 100548550 + 1.5 NA Intergenic L2|LINE|L2 -14660 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 272.5-9 chr15 101512710 101512994 + 1.5 NA Intergenic L1ME1|LINE|L1 -22868 NM_138319 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 228.333-10 chr11 108497350 108497703 + 1.5 NA intron (NM_001363502, intron 1 of 5) intron (NM_001363502, intron 1 of 5) 858 NM_001363503 143888 Hs.83286 NM_153705 ENSG00000178202 POGLUT3 KDELC2 protein O-glucosyltransferase 3 protein-coding 259.334-7 chr8 31627090 31627304 + 1.5 NA Intergenic Intergenic -12555 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 193.833 chr1 41796817 41797016 + 1.5 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 122006 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 207.333-30 chr3 143552118 143552308 + 1.5 NA intron (NM_173653, intron 9 of 15) intron (NM_173653, intron 9 of 15) 209967 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 271-27 chr6 90632969 90633282 + 1.5 NA Intergenic Intergenic -46053 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 215-37 chr6 146996251 146996419 + 1.5 NA intron (NR_034115, intron 6 of 10) L1ME3E|LINE|L1 -162590 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 248.5-10 chr13 97856253 97856466 + 1.5 NA Intergenic Intergenic -97316 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 347.833-3 chr20 18276864 18277206 + 1.5 NA Intergenic MIR3|SINE|MIR -11193 NM_001283005 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 438-4 chr19 18006902 18007216 + 1.5 NA intron (NM_001025604, intron 1 of 7) intron (NM_001025604, intron 1 of 7) -1111 NM_015683 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 251.5-34 chr9 28967251 28967512 + 1.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -78426 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 283.834 chr11 90327310 90327555 + 1.5 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 76200 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 401.667-9 chr2 206556170 206556808 + 1.5 NA intron (NM_003812, intron 9 of 25) intron (NM_003812, intron 9 of 25) -87738 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 228-28 chr21 18032326 18032545 + 1.5 NA intron (NM_001204178, intron 2 of 5) ERVL-E-int|LTR|ERVL 115095 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 243-10 chr2 95053014 95053270 + 1.5 NA intron (NM_002371, intron 3 of 3) intron (NM_002371, intron 3 of 3) 27434 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 344 chr1 3806688 3807169 + 1.5 NA Intergenic LTR13|LTR|ERVK -10430 NM_020710 57470 Hs.268488 NM_020710 ENSG00000130764 LRRC47 - leucine rich repeat containing 47 protein-coding 241.667-32 chr9 97876707 97877046 + 1.5 NA Intergenic Intergenic 23650 NM_004473 2304 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 308.166-8 chr3 171834129 171834431 + 1.5 NA Intergenic Intergenic -9069 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 380.167-2 chr19 48713822 48714257 + 1.5 NA exon (NM_001297753, exon 5 of 7) exon (NM_001297753, exon 5 of 7) 2918 NM_182574 284358 Hs.191815 NM_182574 ENSG00000176909 MAMSTR MASTR MEF2 activating motif and SAP domain containing transcriptional regulator protein-coding 175-18 chr14 96425026 96425198 + 1.5 NA intron (NM_001350890, intron 5 of 16) intron (NM_001350890, intron 5 of 16) 32984 NM_001350891 122481 Hs.667462 NM_152327 ENSG00000140057 AK7 AK 7|SPGF27 adenylate kinase 7 protein-coding 369.5-2 chr10 55509560 55509932 + 1.5 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -89296 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 250.5-16 chr2 163899127 163899404 + 1.5 NA Intergenic L1M2|LINE|L1 -163257 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 262.667-11 chr12 17343608 17344039 + 1.5 NA Intergenic L1MB2|LINE|L1 245255 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 249.667-33 chr8 118681889 118682111 + 1.5 NA intron (NR_038210, intron 3 of 4) MER8|DNA|TcMar-Tigger -60037 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 284.833-15 chr6 72705223 72705412 + 1.5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 74822 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 235.833-8 chr17 70908367 70908572 + 1.5 NA Intergenic L1MC1|LINE|L1 293710 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 324.167-19 chr5 124760243 124760667 + 1.5 NA Intergenic Intergenic -15343 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 345.5-15 chr4 99950566 99950866 + 1.5 NA promoter-TSS (NM_002106) promoter-TSS (NM_002106) 222 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 321.166-3 chr3 163060732 163061163 + 1.5 NA Intergenic L1ME1|LINE|L1 242354 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 261.167-14 chr3 71258038 71258383 + 1.5 NA intron (NR_146142, intron 5 of 19) L2c|LINE|L2 -13133 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 381.167-6 chr14 62834678 62835132 + 1.5 NA intron (NM_139318, intron 8 of 10) MER58B|DNA|hAT-Charlie 210553 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 284.333-12 chr3 38450261 38450680 + 1.5 NA TTS (NR_028389) TTS (NR_028389) -3420 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 201.667-23 chr2 151997805 151997961 + 1.5 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) -23905 NM_001330115 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 338.5-8 chr4 31212150 31212588 + 1.5 NA TTS (NR_125935) TTS (NR_125935) 41225 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 320.5-11 chr3 185200269 185200548 + 1.5 NA intron (NM_001966, intron 6 of 6) LTR90B|LTR|LTR 37507 NR_038990 339926 Hs.567848 NR_038990 ENSG00000223358 EHHADH-AS1 - EHHADH antisense RNA 1 ncRNA 296.5-5 chr10 42690483 42691042 + 1.5 NA non-coding (NR_120656, exon 2 of 5) non-coding (NR_120656, exon 2 of 5) 997 NR_120658 101929397 Hs.729796 NR_120656 LINC01518 - long intergenic non-protein coding RNA 1518 ncRNA 259-22 chr2 207071866 207072087 + 1.5 NA Intergenic Intergenic 38097 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 247.5-36 chr4 75963619 75963813 + 1.5 NA intron (NM_001288984, intron 14 of 21) MSTD|LTR|ERVL-MaLR -17074 NR_125906 101928809 Hs.637575 NR_125906 ENSG00000245928 LOC101928809 - uncharacterized LOC101928809 ncRNA 277.667-10 chr14 59563961 59564271 + 1.5 NA intron (NM_001164399, intron 5 of 19) intron (NM_001164399, intron 5 of 19) 12696 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 253.5-26 chr4 83492188 83492476 + 1.5 NA Intergenic Intergenic -7232 NM_001345962 84142 Hs.334772 NM_139076 ENSG00000163322 ABRAXAS1 ABRA1|CCDC98|FAM175A abraxas 1, BRCA1 A complex subunit protein-coding 203.5-9 chr11 83922849 83923022 + 1.5 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -240510 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 295.5-14 chr4 55356807 55357040 + 1.5 NA intron (NM_024592, intron 1 of 4) L2a|LINE|L2 10681 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 248.333-27 chr4 85448177 85448471 + 1.5 NA Intergenic Intergenic -26826 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 453.001-2 chr12 121812124 121812631 + 1.5 NA intron (NM_001353345, intron 5 of 15) MIRb|SINE|MIR 7653 NM_001353345 23067 Hs.507122 NM_015048 ENSG00000139718 SETD1B KMT2G|Set1B SET domain containing 1B, histone lysine methyltransferase protein-coding 404.333-5 chr22 26693887 26694349 + 1.5 NA intron (NR_110543, intron 1 of 5) L2a|LINE|L2 21275 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 287.333-12 chr4 55279477 55279896 + 1.5 NA Intergenic L1MA9|LINE|L1 -66556 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 321.667-14 chr8 85296618 85296963 + 1.5 NA Intergenic L2a|LINE|L2 44924 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 318-11 chr20 5192266 5192731 + 1.5 NA 3' UTR (NM_003818, exon 13 of 13) 3' UTR (NM_003818, exon 13 of 13) 65490 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 217.833-7 chr12 32641443 32641665 + 1.5 NA 3' UTR (NM_001304484, exon 18 of 18) 3' UTR (NM_001304484, exon 18 of 18) -37646 NM_012063 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 397-18 chr6 75067228 75067677 + 1.5 NA Intergenic Intergenic 61330 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 287.167-5 chr15 96082805 96083069 + 1.5 NA non-coding (NR_158193, exon 8 of 8) non-coding (NR_158193, exon 8 of 8) 44904 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 269.834 chr11 14926039 14926247 + 1.5 NA Intergenic Intergenic -33938 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 242.5-37 chr5 81256053 81256300 + 1.5 NA intron (NM_001099735, intron 5 of 9) intron (NM_001099735, intron 5 of 9) 22854 NM_001099735 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 246.333-42 chr8 104258750 104258947 + 1.5 NA Intergenic L3|LINE|CR1 35513 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 217.333-12 chr14 43803991 43804239 + 1.5 NA Intergenic L1PBa1|LINE|L1 703168 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 220-34 chr8 91426363 91426710 + 1.5 NA Intergenic Intergenic 177217 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 293-8 chr17 20988784 20989042 + 1.5 NA Intergenic AluSq2|SINE|Alu 50347 NR_160719 339260 Hs.661076 NR_123730 ENSG00000233098 LOC339260 - uncharacterized LOC339260 ncRNA 495.333-2 chr19 17605922 17606640 + 1.5 NA exon (NM_001080421, exon 42 of 42) exon (NM_001080421, exon 42 of 42) 50632 NM_024656 79709 Hs.418795 NM_024656 ENSG00000130309 COLGALT1 BSVD3|ColGalT 1|GLT25D1 collagen beta(1-O)galactosyltransferase 1 protein-coding 255.167-13 chr14 30215214 30215434 + 1.5 NA Intergenic Intergenic -287477 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 349.334-5 chr3 89216752 89217318 + 1.5 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 109414 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 345.5-12 chr3 32581482 32581824 + 1.5 NA Intergenic Intergenic -10729 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 286.667-22 chr6 84942439 84942710 + 1.5 NA Intergenic Intergenic -177976 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 299.667-4 chr11 72463046 72463370 + 1.5 NA Intergenic Intergenic -28524 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 268.834-4 chr16 78505464 78505835 + 1.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 405995 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 290.833-8 chr3 117741208 117741508 + 1.5 NA Intergenic L3|LINE|CR1 -50433 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 233-11 chr2 111202689 111202986 + 1.5 NA intron (NR_136162, intron 4 of 4) L1ME3|LINE|L1 81923 NM_207003 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 171.5-11 chr11 108006293 108006510 + 1.5 NA Intergenic L1ME4b|LINE|L1 -2497 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 243-7 chr14 79298018 79298263 + 1.5 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 18760 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 306.501-4 chr2 45316008 45316457 + 1.5 NA Intergenic L2b|LINE|L2 -61291 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 195-33 chr4 54261629 54261900 + 1.5 NA intron (NM_001347829, intron 3 of 22) L2c|LINE|L2 27804 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 191.5-26 chr2 152648378 152648550 + 1.5 NA 3' UTR (NM_052905, exon 26 of 26) 3' UTR (NM_052905, exon 26 of 26) 68997 NM_001365599 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 507.167-2 chr4 20247496 20247970 + 1.5 NA Intergenic Intergenic -4172 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 325.5-3 chr11 62380667 62380952 + 1.5 NA intron (NM_025080, intron 4 of 6) HERVK-int|LTR|ERVK -38224 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 321-27 chr9 36525962 36526277 + 1.5 NA Intergenic L2a|LINE|L2 -46743 NM_001256687 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 309.667-8 chr15 80072394 80072810 + 1.5 NA promoter-TSS (NM_001242915) promoter-TSS (NM_001242915) 41 NM_001242916 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 191 chr1 25610352 25610549 + 1.5 NA Intergenic MIR|SINE|MIR -7018 NM_001289010 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 248.167-25 chr8 38171685 38171993 + 1.5 NA intron (NR_045493, intron 2 of 3) intron (NR_045493, intron 2 of 3) 4654 NM_014462 27257 Hs.425311 NM_014462 ENSG00000175324 LSM1 CASM|YJL124C LSM1 homolog, mRNA degradation associated protein-coding 382.167-9 chr7 25118897 25119344 + 1.5 NA 3' UTR (NM_018947, exon 3 of 3) 3' UTR (NM_018947, exon 3 of 3) 6241 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 165.333-21 chr14 69762160 69762455 + 1.5 NA Intergenic Intergenic -4835 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 380.333-8 chr6 123083705 123084294 + 1.5 NA Intergenic Intergenic 87764 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 171 chr1 22090962 22091291 + 1.5 NA TTS (NM_044472) TTS (NM_044472) 38417 NM_001039802 998 Hs.467637 NM_001791 ENSG00000070831 CDC42 CDC42Hs|G25K|TKS cell division cycle 42 protein-coding 278-31 chr9 737360 737862 + 1.5 NA intron (NR_148869, intron 6 of 10) intron (NR_148869, intron 6 of 10) 30934 NM_001354342 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 264.167-6 chr13 66822681 66822981 + 1.5 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -2338 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 304.167-3 chr13 50138053 50138405 + 1.5 NA intron (NR_109974, intron 2 of 6) AluJb|SINE|Alu -12688 NR_152566 8847 Hs.547964 NR_002612 ENSG00000231607 DLEU2 ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 ncRNA 250.5-4 chr10 101570775 101571074 + 1.5 NA Intergenic Intergenic 17333 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 347-12 chr2 40690085 40690471 + 1.5 NA Intergenic L2c|LINE|L2 -177843 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 207.5-22 chr2 175309694 175310051 + 1.5 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -128162 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 327-19 chr8 130201105 130201442 + 1.5 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 95260 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 459.833 chr1 108524330 108524925 + 1.5 NA Intergenic L1P4|LINE|L1 -35473 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 198-13 chr16 19080495 19080675 + 1.5 NA TTS (NM_016138) TTS (NM_016138) 11938 NM_001370489 10229 Hs.157113 NM_016138 ENSG00000167186 COQ7 CAT5|CLK-1|CLK1|COQ10D8 coenzyme Q7, hydroxylase protein-coding 374.5-7 chr3 123327052 123327501 + 1.5 NA intron (NM_183357, intron 7 of 20) intron (NM_183357, intron 7 of 20) 89066 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 322-11 chr5 164780517 164780894 + 1.5 NA Intergenic L1M4|LINE|L1 310426 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 193-11 chr14 33790330 33790621 + 1.5 NA intron (NM_001165893, intron 8 of 10) intron (NM_001165893, intron 8 of 10) 81538 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 246.334-2 chr1 46451664 46451920 + 1.5 NA Intergenic Intergenic -2088 NR_121680 101929651 Hs.638707 NR_121680 ENSG00000224863 LINC01398 - long intergenic non-protein coding RNA 1398 ncRNA 311.333-7 chr13 39253478 39253696 + 1.5 NA Intergenic L2a|LINE|L2 215131 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 212.166-8 chr5 128997079 128997311 + 1.5 NA intron (NM_001017372, intron 4 of 9) intron (NM_001017372, intron 4 of 9) 31707 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 176.167-26 chr3 44055631 44055973 + 1.5 NA Intergenic Intergenic -58410 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 237.167-23 chr7 46620559 46620827 + 1.5 NA Intergenic L1ME3D|LINE|L1 76429 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 264.333-24 chr4 103666113 103666475 + 1.5 NA intron (NM_001059, intron 1 of 4) L2b|LINE|L2 53691 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 208.5-25 chr2 229007761 229007934 + 1.5 NA Intergenic Intergenic 224245 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 170.5-30 chr3 46556845 46556967 + 1.5 NA promoter-TSS (NR_073385) promoter-TSS (NR_073385) -492 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 511.333-6 chr7 68176953 68177649 + 1.5 NA Intergenic Intergenic 157048 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 175.667-17 chr14 42911583 42911841 + 1.5 NA Intergenic L1PA16|LINE|L1 1304856 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 275.833-22 chrX 149286985 149287310 + 1.5 NA Intergenic Intergenic 218159 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 277.5-12 chr3 33390234 33390588 + 1.5 NA intron (NM_001128160, intron 14 of 14) intron (NM_001128160, intron 14 of 14) 49967 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 316-13 chr5 154642614 154642903 + 1.5 NA Intergenic HERVK-int|LTR|ERVK -40221 NM_001367715 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 298.333-6 chr12 70221195 70221567 + 1.5 NA TTS (NR_120460) TTS (NR_120460) -21649 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 256.833-8 chr2 142112817 142113076 + 1.5 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 18755 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 455.001 chr15 75201885 75202629 + 1.5 NA intron (NM_015492, intron 1 of 2) CpG 375 NM_015492 56905 Hs.17936 NM_015492 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 509-5 chr8 52723580 52724371 + 1.5 NA Intergenic MER97b|DNA|hAT-Tip100 -9509 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 359.501-4 chr2 135857383 135857659 + 1.5 NA intron (NM_005915, intron 10 of 16) intron (NM_005915, intron 10 of 16) 18922 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 255.5-32 chr7 27197113 27197363 + 1.5 NA 3' UTR (NM_000522, exon 2 of 2) 3' UTR (NM_000522, exon 2 of 2) 2853 NM_000522 3209 Hs.592172 NM_000522 ENSG00000106031 HOXA13 HOX1|HOX1J homeobox A13 protein-coding 194.334 chr1 244667488 244667659 + 1.5 NA intron (NM_016076, intron 1 of 4) MIR|SINE|MIR 14447 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 278.5-2 chr1 218537782 218538032 + 1.5 NA intron (NR_031644, intron 2 of 6) L1M6|LINE|L1 27812 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 281-20 chr5 55158259 55158583 + 1.5 NA intron (NM_001145734, intron 2 of 10) intron (NM_001145734, intron 2 of 10) -1750 NM_001306197 493869 Hs.289044 NM_001008397 ENSG00000164294 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 393.5-5 chr18 7313053 7313583 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 82214 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 211.5-20 chr16 77638129 77638275 + 1.5 NA Intergenic Intergenic -84290 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 387.667-6 chr5 65933296 65933779 + 1.5 NA intron (NM_001253697, intron 1 of 25) intron (NM_001253697, intron 1 of 25) 6962 NM_001253701 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 329.833-2 chr14 91367142 91367457 + 1.5 NA intron (NM_001080414, intron 3 of 29) intron (NM_001080414, intron 3 of 29) 50521 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|HYC1|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 319.834 chr2 85695702 85696045 + 1.5 NA intron (NM_012483, intron 3 of 5) intron (NM_012483, intron 3 of 5) 1515 NM_006433 10578 Hs.105806 NM_006433 ENSG00000115523 GNLY D2S69E|LAG-2|LAG2|NKG5|TLA519 granulysin protein-coding 243.833-2 chr1 116059276 116059470 + 1.5 NA intron (NM_018420, intron 8 of 11) L1ME1|LINE|L1 -52382 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 371.5-3 chr11 10264049 10264429 + 1.5 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 29968 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 264.833-18 chr20 56909354 56909554 + 1.5 NA Intergenic Intergenic 280148 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 337.833-3 chr11 24270293 24270737 + 1.5 NA Intergenic MIR|SINE|MIR -226538 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 204-41 chr8 82605658 82605904 + 1.5 NA Intergenic Intergenic -306323 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 300.333-11 chr7 29112922 29113331 + 1.5 NA intron (NM_001371256, intron 6 of 16) intron (NM_001371256, intron 6 of 16) -11907 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 271.166-7 chr6 33580221 33580548 + 1.5 NA promoter-TSS (NM_001188) promoter-TSS (NM_001188) -108 NM_001188 578 Hs.485139 NM_001188 ENSG00000030110 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2 antagonist/killer 1 protein-coding 284.5-2 chr11 21351107 21351459 + 1.5 NA intron (NM_201551, intron 14 of 18) MLT1C|LTR|ERVL-MaLR 681697 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 231-12 chr17 81255278 81255501 + 1.5 NA intron (NM_001037984, intron 11 of 15) intron (NM_001037984, intron 11 of 15) 15475 NR_148426 284184 Hs.356545 NM_001086521 ENSG00000224877 NDUFAF8 C17orf89 NADH:ubiquinone oxidoreductase complex assembly factor 8 protein-coding 308.667-7 chr14 38871568 38871851 + 1.5 NA intron (NR_039982, intron 2 of 4) intron (NR_039982, intron 2 of 4) -10887 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 265.5-9 chr14 56604415 56604737 + 1.5 NA intron (NM_017799, intron 4 of 15) intron (NM_017799, intron 4 of 15) 24778 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 219.834-7 chr10 122113220 122113440 + 1.5 NA intron (NM_001291879, intron 1 of 16) CpG 445 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 308.833-16 chr8 74914421 74914809 + 1.5 NA Intergenic MamRTE1|LINE|RTE-BovB -69890 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 303.167-8 chrX 53040831 53041221 + 1.5 NA Intergenic L1MC5a|LINE|L1 -8298 NM_018969 54328 Hs.193011 NM_018969 ENSG00000184194 GPR173 SREB3 G protein-coupled receptor 173 protein-coding 466-7 chr7 9129618 9130149 + 1.5 NA Intergenic L1MA9|LINE|L1 -504387 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 192-10 chr13 64723924 64724065 + 1.5 NA Intergenic Intergenic -647983 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 191.5-53 chrX 8030009 8030617 + 1.5 NA Intergenic Intergenic -96652 NR_030380 723779 NR_030380 ENSG00000207628 MIR651 MIRN651|hsa-mir-651|mir-651 microRNA 651 ncRNA 300.333-5 chr15 57328070 57328423 + 1.5 NA Intergenic Intergenic 9108 NR_120337 101928611 Hs.569495 NR_120337 LINC01413 - long intergenic non-protein coding RNA 1413 ncRNA 371.5-8 chr20 44522130 44522439 + 1.5 NA promoter-TSS (NM_198941) promoter-TSS (NM_198941) -168 NM_198941 10955 Hs.272168 NM_006811 ENSG00000132824 SERINC3 AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1 serine incorporator 3 protein-coding 220.667 chr1 116725403 116725638 + 1.5 NA Intergenic AluSx3|SINE|Alu -28910 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 189.167-7 chr11 74274033 74274211 + 1.5 NA intron (NR_110031, intron 8 of 11) L1ME1|LINE|L1 -37240 NR_120556 101928580 Hs.569025 NR_120556 ENSG00000246211 P4HA3-AS1 - P4HA3 antisense RNA 1 ncRNA 381-11 chr21 45439171 45439855 + 1.5 NA intron (NM_130445, intron 2 of 42) CpG -14443 NR_027498 378832 Hs.517353 NM_199175 ENSG00000183535 COL18A1-AS1 C21orf123|NCRNA00175|PRED80 COL18A1 antisense RNA 1 ncRNA 329.167-10 chr3 37320625 37320922 + 1.5 NA intron (NM_001172713, intron 13 of 22) intron (NM_001172713, intron 13 of 22) -65496 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 294.667-15 chr2 56892315 56892512 + 1.5 NA Intergenic Intergenic -706643 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 370-17 chr8 120483163 120483577 + 1.5 NA intron (NM_022045, intron 11 of 21) intron (NM_022045, intron 11 of 21) 37951 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 349.833-2 chr16 46697030 46697390 + 1.5 NA intron (NR_037620, intron 6 of 6) FLAM_A|SINE|Alu 7551 NM_014321 23594 Hs.49760 NM_014321 ENSG00000091651 ORC6 ORC6L origin recognition complex subunit 6 protein-coding 211-27 chr2 102721224 102721430 + 1.5 NA intron (NR_136174, intron 5 of 6) intron (NR_136174, intron 5 of 6) 15561 NR_136173 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 504.5-5 chr8 27863586 27864205 + 1.5 NA Intergenic Intergenic 22221 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 195.667-12 chr13 33829188 33829489 + 1.5 NA intron (NM_002915, intron 4 of 8) intron (NM_002915, intron 4 of 8) 11189 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 188.833-16 chr2 14525406 14525667 + 1.5 NA Intergenic Intergenic -107181 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 411.501 chr1 86965016 86965459 + 1.5 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 50602 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 313.5-25 chr8 121385662 121386017 + 1.5 NA Intergenic AluY|SINE|Alu -253507 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 229.333-37 chr9 105413179 105413537 + 1.5 NA intron (NM_001330731, intron 15 of 15) MLT1J|LTR|ERVL-MaLR -34676 NM_001287191 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 430 chr10 99640220 99640581 + 1.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -19109 NM_020354 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 222.333-24 chr5 107762550 107762785 + 1.5 NA Intergenic Intergenic -91730 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 344.166-3 chr9 104744841 104745075 + 1.5 NA Intergenic L1ME3D|LINE|L1 -2725 NM_001329570 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 297-23 chr5 180749625 180749946 + 1.5 NA Intergenic Intergenic -9727 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 462.5-3 chr17 57951895 57952255 + 1.5 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 3337 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 218.5-31 chr7 15637736 15637900 + 1.33333 NA intron (NM_005924, intron 1 of 2) MIRb|SINE|MIR -30129 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 189-21 chr16 80468478 80468685 + 1.33333 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -72153 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 210.833-6 chr10 98025336 98025599 + 1.33333 NA intron (NM_001206528, intron 1 of 14) intron (NM_001206528, intron 1 of 14) 5154 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 174.5-16 chr2 45433325 45433821 + 1.33333 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) 177694 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 239.5-11 chr15 63049945 63050263 + 1.33333 NA promoter-TSS (NR_147233) promoter-TSS (NR_147233) -717 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 174.333-39 chr7 27459786 27460023 + 1.33333 NA Intergenic Intergenic -156070 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 170.667-37 chr5 163379561 163379800 + 1.33333 NA Intergenic Intergenic -57891 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 265.999-2 chr12 91268099 91268347 + 1.33333 NA Intergenic Intergenic -85406 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 198-22 chr2 78435086 78435293 + 1.33333 NA Intergenic Intergenic -110342 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 272.833-2 chr10 43886004 43886222 + 1.33333 NA intron (NR_038268, intron 4 of 4) intron (NR_038268, intron 4 of 4) -23183 NR_033846 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 271-34 chr8 121327575 121328098 + 1.33333 NA Intergenic Intergenic -311510 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 455.666 chr7 134986464 134986954 + 1.33333 NA 5' UTR (NM_001367817, exon 1 of 5) 5' UTR (NM_001367817, exon 1 of 5) 201 NR_160299 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 228.667-8 chr12 31845288 31845628 + 1.33333 NA Intergenic LTR40A1|LTR|ERVL 41745 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 305.666 chr2 240097971 240098362 + 1.33333 NA Intergenic L1PB3|LINE|L1 38139 NM_001163424 150678 Hs.293884 NM_138336 ENSG00000172428 COPS9 CSNAP|MYEOV2 COP9 signalosome subunit 9 protein-coding 242.666-10 chr18 77766273 77766555 + 1.33333 NA Intergenic Intergenic 227313 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 242.333-17 chr3 164531348 164531585 + 1.33333 NA Intergenic Intergenic 300014 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 239.5-25 chr20 35742465 35742649 + 1.33333 NA promoter-TSS (NM_001323422) promoter-TSS (NM_001323422) -221 NR_136587 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 307.333-7 chr19 2888788 2889215 + 1.33333 NA Intergenic CpG -11927 NM_173480 126295 Hs.591378 NM_173480 ENSG00000171970 ZNF57 ZNF424 zinc finger protein 57 protein-coding 290.333-17 chr3 178064987 178065269 + 1.33333 NA Intergenic L1MD1|LINE|L1 248263 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 234.333-4 chr10 72826050 72826301 + 1.33333 NA intron (NR_073062, intron 3 of 9) MER5A1|DNA|hAT-Charlie -67564 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 193.5-27 chr20 5919451 5919717 + 1.33333 NA intron (NM_001819, intron 3 of 4) MER102a|DNA|hAT-Charlie 8074 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 328.333 chr1 22811295 22811953 + 1.33333 NA intron (NM_004442, intron 3 of 15) intron (NM_004442, intron 3 of 15) 51602 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 265.666-13 chr8 99998538 99998872 + 1.33333 NA intron (NM_015668, intron 19 of 27) AluJr4|SINE|Alu -5877 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 283.833-13 chr6 126033126 126033399 + 1.33333 NA intron (NM_001031712, intron 12 of 12) intron (NM_001031712, intron 12 of 12) 46722 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 261.5-33 chr6 116846996 116847477 + 1.33333 NA Intergenic Intergenic -18179 NM_148963 222545 Hs.266745 NM_148963 ENSG00000173612 GPRC6A GPCR|bA86F4.3 G protein-coupled receptor class C group 6 member A protein-coding 209.166-4 chr18 50854076 50854308 + 1.33333 NA Intergenic Intergenic -24926 NM_002396 4200 Hs.233119 NM_002396 ENSG00000082212 ME2 ODS1 malic enzyme 2 protein-coding 278.166-3 chr4 5038184 5038483 + 1.33333 NA Intergenic Intergenic -13147 NM_001345969 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 229.666-8 chr6 131946145 131946370 + 1.33333 NA Intergenic L1MA8|LINE|L1 5115 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 213.333-24 chr3 156987396 156987587 + 1.33333 NA intron (NM_001004316, intron 7 of 12) intron (NM_001004316, intron 7 of 12) -94350 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 444.833-8 chr9 18208079 18208638 + 1.33333 NA Intergenic Intergenic -265795 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 194.833-17 chr17 39300978 39301257 + 1.33333 NA intron (NM_001370209, intron 3 of 13) intron (NM_001370209, intron 3 of 13) 3717 NR_162098 113839521 NR_162098 MIR548BC - microRNA 548BC ncRNA 353-12 chr3 134317535 134318089 + 1.33333 NA intron (NR_146711, intron 1 of 1) LFSINE_Vert|SINE|tRNA 4236 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 254.5-7 chr14 48542266 48542509 + 1.33333 NA Intergenic L1M5|LINE|L1 -747373 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 245.666-10 chr7 106465711 106466127 + 1.33333 NA Intergenic Intergenic -180936 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 316.334-2 chr10 121739385 121739881 + 1.33333 NA TTS (NM_001288736) TTS (NM_001288736) -141175 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 271.166-6 chr5 61327916 61328249 + 1.33333 NA Intergenic Intergenic -4176 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 269.667-18 chr3 100949965 100950315 + 1.33333 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 43350 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 312-24 chr8 137554821 137555119 + 1.33333 NA Intergenic Intergenic -141382 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 225.667-5 chr10 116389007 116389352 + 1.33333 NA Intergenic Intergenic -38668 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 469.5-5 chr6 37265162 37265787 + 1.33333 NA intron (NR_130108, intron 1 of 12) CR1_Mam|LINE|CR1 -7319 NM_001286401 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 203.333-17 chr12 25273631 25273848 + 1.33333 NA Intergenic AluSc|SINE|Alu -22810 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 269.333-11 chr2 229722872 229723165 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -8463 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 352.501-2 chr2 136800420 136800936 + 1.33333 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 35133 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 206-20 chr2 58592064 58592479 + 1.33333 NA intron (NR_033873, intron 1 of 13) MamGypsy2-LTR|LTR|Gypsy 71518 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 269-14 chr19 57441223 57441626 + 1.33333 NA intron (NM_001321953, intron 1 of 1) MER74A|LTR|ERVL 6099 NM_001321952 388567 Hs.467358 NM_001023561 ENSG00000186230 ZNF749 - zinc finger protein 749 protein-coding 182.666-5 chr2 24703028 24703202 + 1.33333 NA intron (NM_001362950, intron 11 of 23) intron (NM_001362950, intron 11 of 23) -90000 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 255.666-2 chr10 21381023 21381397 + 1.33333 NA Intergenic Kanga1|DNA|TcMar-Tc2 -8260 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 299.999 chr11 118352963 118353297 + 1.33333 NA 3' UTR (NM_000073, exon 7 of 7) 3' UTR (NM_000073, exon 7 of 7) -6470 NM_001204077 9354 Hs.75275 NM_004788 ENSG00000110344 UBE4A E4|UBOX2|UFD2 ubiquitination factor E4A protein-coding 243.333-15 chr12 38053775 38054052 + 1.33333 NA Intergenic Intergenic -262861 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 221-23 chr21 25103992 25104262 + 1.33333 NA Intergenic Intergenic 263577 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 245.333-22 chr3 188491675 188491898 + 1.33333 NA intron (NM_001167672, intron 3 of 9) intron (NM_001167672, intron 3 of 9) 76880 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 205.5-26 chr4 64736395 64736672 + 1.33333 NA Intergenic Intergenic 267967 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 279.333 chr1 101698326 101698703 + 1.33333 NA Intergenic L4_A_Mam|LINE|RTE-X 148566 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 336.333-12 chr8 120524964 120525507 + 1.33333 NA Intergenic Intergenic 79816 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 285.5-21 chr4 4700448 4700806 + 1.33333 NA intron (NR_037888, intron 4 of 5) L1PB1|LINE|L1 36301 NR_145783 109623454 NR_145783 SNORD162 - small nucleolar RNA, C/D box 162 snoRNA 324.667-18 chr3 8483519 8483988 + 1.33333 NA intron (NR_033378, intron 3 of 3) MER5A1|DNA|hAT-Charlie 17905 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 190.667-3 chr1 213771550 213771788 + 1.33333 NA Intergenic Intergenic -153080 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 267.833-6 chr2 69157226 69157718 + 1.33333 NA intron (NM_032208, intron 13 of 17) intron (NM_032208, intron 13 of 17) 53790 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 277.333-26 chr3 39870983 39871436 + 1.33333 NA intron (NM_001284424, intron 1 of 15) intron (NM_001284424, intron 1 of 15) 61549 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 213.5-7 chr15 57507639 57508004 + 1.33333 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -84083 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 209.666-4 chr3 119850393 119850649 + 1.33333 NA intron (NM_002093, intron 10 of 11) intron (NM_002093, intron 10 of 11) 67811 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 243.166-7 chr3 88196213 88196532 + 1.33333 NA Intergenic MER41B|LTR|ERV1 46413 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 277.666-8 chr4 182556610 182557004 + 1.33333 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 313405 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 250.667-43 chr8 56310433 56310924 + 1.33333 NA intron (NM_001318050, intron 2 of 5) AluSc|SINE|Alu 10098 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 341.333-11 chr7 17795134 17795573 + 1.33333 NA intron (NM_001350862, intron 25 of 25) intron (NM_001350862, intron 25 of 25) 145141 NM_001350863 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 277.666-3 chr10 106261385 106261614 + 1.33333 NA Intergenic L1MC1|LINE|L1 121334 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 194.333-16 chr14 45317233 45317457 + 1.33333 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat -64143 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 296.666-12 chr9 105596464 105597022 + 1.33333 NA intron (NM_001351502, intron 6 of 13) intron (NM_001351502, intron 6 of 13) 38612 NM_001351499 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 198.833-8 chr12 54831486 54831819 + 1.33333 NA Intergenic MER31-int|LTR|ERV1 -22864 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 266.5-12 chr14 71278773 71279145 + 1.33333 NA Intergenic MIR|SINE|MIR -41517 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 239.333-8 chr15 72312554 72313010 + 1.33333 NA intron (NM_052840, intron 2 of 12) intron (NM_052840, intron 2 of 12) -6467 NM_001172685 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP Elav-like family member 6 protein-coding 197.834-8 chr2 56818620 56818876 + 1.33333 NA Intergenic L1PA8|LINE|L1 -632978 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 411.333-4 chr12 54236034 54236427 + 1.33333 NA 3' UTR (NM_001127321, exon 5 of 5) 3' UTR (NM_001127321, exon 5 of 5) -4754 NR_039851 100616400 NR_039851 ENSG00000283803 MIR3198-2 mir-3198-2 microRNA 3198-2 ncRNA 357.166 chr12 632219 632661 + 1.33333 NA intron (NR_122124, intron 2 of 4) L2|LINE|L2 1549 NR_122124 100049716 Hs.655804 NR_122124 ENSG00000177406 LOC100049716 - uncharacterized LOC100049716 ncRNA 308.5-27 chrX 95213087 95213609 + 1.33333 NA Intergenic MSTD|LTR|ERVL-MaLR -150122 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 215-9 chr13 89222863 89223132 + 1.33333 NA intron (NR_131229, intron 1 of 4) L1MD2|LINE|L1 -12294 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 184.167-36 chrX 53422656 53422904 + 1.33333 NA promoter-TSS (NM_006306) promoter-TSS (NM_006306) -52 NM_001281463 8243 Hs.211602 NM_006306 ENSG00000072501 SMC1A CDLS2|DXS423E|SB1.8|SMC1|SMC1L1|SMC1alpha|SMCB structural maintenance of chromosomes 1A protein-coding 163.833-20 chr17 64396663 64396807 + 1.33333 NA Intergenic AluSx|SINE|Alu -5875 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 218-12 chr12 66035482 66035792 + 1.33333 NA Intergenic Intergenic -4571 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 188.167-11 chr14 46205011 46205236 + 1.33333 NA intron (NR_102702, intron 1 of 3) L1MB1|LINE|L1 140964 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 429.333-5 chr5 177351396 177352006 + 1.33333 NA promoter-TSS (NM_006816) promoter-TSS (NM_006816) -33 NM_006816 10960 Hs.75864 NM_006816 ENSG00000169223 LMAN2 C5orf8|GP36B|VIP36 lectin, mannose binding 2 protein-coding 239-31 chr5 179622589 179622839 + 1.33333 NA intron (NM_001364234, intron 3 of 14).2 AluSz|SINE|Alu 687 NM_001364239 3187 Hs.604001 NM_005520 ENSG00000169045 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 protein-coding 170.333-2 chr1 107278978 107279158 + 1.33333 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 130999 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 324.999-4 chrX 138745425 138745835 + 1.33333 NA intron (NM_001139498, intron 2 of 5) intron (NM_001139498, intron 2 of 5) -6277 NM_033642 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 203.667-48 chr7 49915586 49915957 + 1.33333 NA 3' UTR (NM_198570, exon 4 of 4) 3' UTR (NM_198570, exon 4 of 4) 140438 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 340.834-4 chr13 31411651 31412228 + 1.33333 NA Intergenic L1M5|LINE|L1 211964 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 295.666 chr1 227946474 227946765 + 1.33333 NA intron (NM_003395, intron 1 of 3) GA-rich|Low_complexity|Low_complexity 1313 NM_003395 7483 Hs.149504 NM_003395 ENSG00000143816 WNT9A WNT14 Wnt family member 9A protein-coding 307.001 chr11 112185569 112185970 + 1.33333 NA intron (NM_031938, intron 2 of 11) L1MB3|LINE|L1 9403 NM_001256400 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 257.5-14 chr17 30157744 30158184 + 1.33333 NA intron (NM_032141, intron 2 of 6) L1MA4A|LINE|L1 -40804 NR_036149 100423003 NR_036149 ENSG00000284399 MIR3184 - microRNA 3184 ncRNA 384.666-4 chr18 6627379 6627720 + 1.33333 NA Intergenic Intergenic -102167 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 200.666-11 chr7 106358668 106358841 + 1.33333 NA Intergenic Intergenic -73771 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 367.333-2 chr12 14465615 14466087 + 1.33333 NA intron (NM_181352, intron 9 of 14) L1M5|LINE|L1 80570 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 216.5-10 chr11 45847883 45848063 + 1.33333 NA intron (NM_021117, intron 1 of 11) MIRc|SINE|MIR 498 NM_021117 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian regulator 2 protein-coding 255.666 chr1 159226950 159227167 + 1.33333 NA Intergenic MIRc|SINE|MIR 22183 NM_001122951 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 257-13 chr15 68054808 68055134 + 1.33333 NA 5' UTR (NM_001320687, exon 1 of 15) 5' UTR (NM_001320687, exon 1 of 15) 395 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 321.333-16 chr8 60037838 60038247 + 1.33333 NA Intergenic L1MA2|LINE|L1 243358 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 284.666-11 chr7 65947673 65947989 + 1.33333 NA intron (NM_001284342, intron 1 of 1) AluSx3|SINE|Alu 34382 NM_000181 2990 Hs.255230 NM_000181 ENSG00000169919 GUSB BG|MPS7 glucuronidase beta protein-coding 182.666-9 chr8 3285160 3285362 + 1.33333 NA intron (NM_033225, intron 25 of 69) intron (NM_033225, intron 25 of 69) -556810 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 239.167-31 chr8 34908979 34909176 + 1.33333 NA Intergenic MER34C_|LTR|ERV1 125156 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 200.666-10 chr7 55623145 55623422 + 1.33333 NA Intergenic LTR49-int|LTR|ERV1 -50781 NM_030796 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 298.999-3 chr2 208105894 208106322 + 1.33333 NA Intergenic Intergenic -13021 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 234-37 chr8 141507892 141508097 + 1.33333 NA promoter-TSS (NM_207414).2 promoter-TSS (NM_207414).2 -764 NM_207414 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 324-20 chr7 69504979 69505364 + 1.33333 NA Intergenic Intergenic 92453 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 256.999-2 chr8 41146330 41146572 + 1.33333 NA Intergenic MIRb|SINE|MIR 124692 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 209-21 chr20 53606373 53606613 + 1.33333 NA Intergenic MIRb|SINE|MIR -1861 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 382.167 chr12 40464921 40465296 + 1.33333 NA intron (NM_173600, intron 48 of 173) intron (NM_173600, intron 48 of 173) 71714 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 223.499 chr1 61695542 61695727 + 1.33333 NA intron (NM_032027, intron 4 of 6) intron (NM_032027, intron 4 of 6) 29507 NM_032027 83941 Hs.656790 NM_032027 ENSG00000162604 TM2D1 BBP TM2 domain containing 1 protein-coding 367.499 chr14 19870683 19871012 + 1.33333 NA Intergenic MIR3|SINE|MIR -1674 NR_145507 283617 NM_001348266 ENSG00000176290 OR4K3 OR14-10|OR4K3P olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding 163.834-4 chr8 77835933 77836173 + 1.33333 NA Intergenic L1M5|LINE|L1 385356 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 209-25 chr3 153140594 153140903 + 1.33333 NA Intergenic Helitron3Na_Mam|RC|Helitron -21478 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 324.167-11 chr2 115498343 115498683 + 1.33333 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 154698 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 334.333-14 chr7 98021480 98021929 + 1.33333 NA Intergenic Intergenic -31600 NM_006188 4951 Hs.510456 NM_006188 ENSG00000135175 OCM2 OCM|OM oncomodulin 2 protein-coding 255.333-9 chr13 95661267 95661603 + 1.33333 NA Intergenic L2|LINE|L2 15490 NR_132117 100289274 Hs.594844 NR_132117 ENSG00000247400 DNAJC3-DT DNAJC3-AS1 DNAJC3 divergent transcript ncRNA 200-5 chr10 33328019 33328231 + 1.33333 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 6542 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 258.001 chr1 109247674 109248193 + 1.33333 NA Intergenic OldhAT1|DNA|hAT-Ac -1606 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 315.833-13 chr9 79005370 79005808 + 1.33333 NA Intergenic L1M6|LINE|L1 140077 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 525 chr10 33330377 33330941 + 1.33333 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 4008 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 212.5-22 chr22 36565596 36565805 + 1.33333 NA intron (NM_006078, intron 3 of 3) AluJr|SINE|Alu -36534 NR_156418 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 223.333-49 chr9 35816665 35816863 + 1.33333 NA non-coding (NR_052026, exon 8 of 8) non-coding (NR_052026, exon 8 of 8) -1722 NM_032593 84681 Hs.70573 NM_032593 ENSG00000137133 HINT2 HIT-17 histidine triad nucleotide binding protein 2 protein-coding 287.833-8 chr18 47755973 47756436 + 1.33333 NA Intergenic Intergenic 174455 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 392.833-3 chr19 28501514 28501902 + 1.33333 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -104980 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 213.5-10 chr16 53099712 53099908 + 1.33333 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) -31202 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 227-17 chr2 113958598 113959070 + 1.33333 NA non-coding (NR_102318, exon 11 of 11) non-coding (NR_102318, exon 11 of 11) -10488 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 272-31 chr9 69192357 69192632 + 1.33333 NA intron (NM_001369871, intron 3 of 24) intron (NM_001369871, intron 3 of 24) -12517 NM_001170415 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 310.666-5 chr7 114615839 114616192 + 1.33333 NA intron (NM_148898, intron 4 of 17) L2a|LINE|L2 -37330 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 183.666-4 chr8 56256101 56256339 + 1.33333 NA Intergenic L1MEd|LINE|L1 44431 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 253.166-2 chr10 11426451 11426683 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR -81893 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 170.166-7 chrX 120380679 120380901 + 1.33333 NA 3' UTR (NM_001142447, exon 8 of 8) 3' UTR (NM_001142447, exon 8 of 8) 18701 NM_001142447 23439 Hs.292599 NM_012069 ENSG00000101892 ATP1B4 - ATPase Na+/K+ transporting family member beta 4 protein-coding 267.666-8 chr3 181279812 181280023 + 1.33333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 48180 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 294.5-13 chr17 1882579 1883071 + 1.33333 NA intron (NM_001355120, intron 12 of 16) intron (NM_001355120, intron 12 of 16) 52820 NM_001355120 6117 Hs.461925 NM_002945 ENSG00000132383 RPA1 HSSB|MST075|REPA1|RF-A|RP-A|RPA70 replication protein A1 protein-coding 263.166-4 chr9 118882927 118883204 + 1.33333 NA Intergenic Intergenic 203394 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 220.333-18 chr2 180240716 180240938 + 1.33333 NA Intergenic Intergenic -233530 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 189-52 chr7 38524821 38525073 + 1.33333 NA intron (NM_001635, intron 2 of 20) MER102c|DNA|hAT-Charlie 106426 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 426.333 chr1 26787884 26788383 + 1.33333 NA promoter-TSS (NM_001202554) promoter-TSS (NM_001202554) -55 NM_001202554 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 213.166 chr14 48156248 48156490 + 1.33333 NA Intergenic L2a|LINE|L2 -361355 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 384.334-2 chr19 47778152 47778677 + 1.33333 NA promoter-TSS (NM_003009) promoter-TSS (NM_003009) -289 NM_003009 6415 Hs.631549 NM_003009 ENSG00000178980 SELENOW SEPW1|selW selenoprotein W protein-coding 526.832 chr16 11255436 11256065 + 1.33333 NA intron (NM_003745, intron 1 of 1) CpG 432 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 215.833-13 chr18 6102104 6102474 + 1.33333 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -154455 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 212.834-3 chr17 72270750 72271064 + 1.33333 NA Intergenic Intergenic -71904 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 167.333-49 chr6 100175914 100176084 + 1.33333 NA Intergenic Intergenic -181761 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 249.333-23 chr4 61681712 61681933 + 1.33333 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 479650 NM_001371342 321.999-7 chr9 117818022 117818404 + 1.33333 NA Intergenic L1PA16|LINE|L1 113810 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 342.667-9 chr2 201363942 201364388 + 1.33333 NA Intergenic L1PA16|LINE|L1 -6767 NM_139163 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 209.833-10 chr14 32838410 32838584 + 1.33333 NA TTS (NM_004274) TTS (NM_004274) -100382 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 279.666-6 chr2 171416156 171416496 + 1.33333 NA intron (NM_001321157, intron 1 of 10) intron (NM_001321157, intron 1 of 10) 17664 NM_001321159 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 169.666-3 chr6 61944337 61944620 + 1.33333 NA intron (NR_146874, intron 4 of 13) L1MA4A|LINE|L1 341747 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 272.167-10 chr2 68534552 68535051 + 1.33333 NA intron (NM_173545, intron 6 of 9) intron (NM_173545, intron 6 of 9) 67216 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 290.166-7 chr5 165196483 165196873 + 1.33333 NA Intergenic Intergenic 726399 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 184-57 chrX 57532152 57532385 + 1.33333 NA Intergenic L1M1|LINE|L1 -59568 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 322.666-6 chr16 55527897 55528179 + 1.33333 NA intron (NM_017839, intron 2 of 13) intron (NM_017839, intron 2 of 13) 18966 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 216.333-8 chr11 12422537 12422838 + 1.33333 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 45116 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 175.333-52 chr7 29616760 29617085 + 1.33333 NA Intergenic Intergenic 51389 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 271.167-10 chr17 76657507 76657920 + 1.33333 NA Intergenic Intergenic -13956 NR_110309 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 234.666-6 chr3 104648625 104648929 + 1.33333 NA Intergenic L1MA7|LINE|L1 -717936 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 233-24 chr5 154635426 154635740 + 1.33333 NA Intergenic Intergenic -39511 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 293.333-23 chrX 111244184 111244661 + 1.33333 NA TTS (NM_014289) TTS (NM_014289) 26061 NM_014289 827 Hs.496593 NM_014289 ENSG00000077274 CAPN6 CANPX|CAPNX|CalpM|DJ914P14.1 calpain 6 protein-coding 203.333-13 chr11 64307752 64307928 + 1.33333 NA intron (NM_001282451, intron 2 of 6) intron (NM_001282451, intron 2 of 6) 1613 NM_001282450 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding 239.333-9 chr16 57351058 57351355 + 1.33333 NA Intergenic AluY|SINE|Alu -7577 NM_002990 6367 Hs.534347 NM_002990 ENSG00000102962 CCL22 A-152E5.1|ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1 C-C motif chemokine ligand 22 protein-coding 189-43 chr4 123102858 123103102 + 1.33333 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) 179902 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 299.333-14 chr3 132007053 132007554 + 1.33333 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) -21372 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 356.333-5 chr17 27379486 27379901 + 1.33333 NA Intergenic MIRb|SINE|MIR -38312 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 201.499 chr5 58584846 58584997 + 1.33333 NA intron (NM_138453, intron 1 of 4) intron (NM_138453, intron 1 of 4) 1846 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 277.333-29 chr7 8366496 8366853 + 1.33333 NA Intergenic Intergenic -66935 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 174.666 chr12 21774882 21775294 + 1.33333 NA promoter-TSS (NM_004982) promoter-TSS (NM_004982) -382 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 174.333-26 chr3 78184914 78185100 + 1.33333 NA Intergenic Intergenic -136044 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 292.333-10 chr2 111628520 111628937 + 1.33333 NA Intergenic L1MDa|LINE|L1 -133567 NR_024373 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 341.666-3 chr18 11995579 11995938 + 1.33333 NA intron (NM_014214, intron 1 of 7) intron (NM_014214, intron 1 of 7) 14251 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 187.333-46 chr8 90945707 90945923 + 1.33333 NA intron (NM_022351, intron 10 of 12) intron (NM_022351, intron 10 of 12) 39262 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 248.667-31 chr5 56290671 56291052 + 1.33333 NA Intergenic Intergenic -57531 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 301.5-13 chr2 35462921 35463298 + 1.33333 NA Intergenic Intergenic -8296 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 170.5-38 chr6 114304467 114304715 + 1.33333 NA intron (NR_125845, intron 9 of 9) Charlie1a|DNA|hAT-Charlie -241714 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 316.666-3 chr7 48801936 48802293 + 1.33333 NA Intergenic L1MB7|LINE|L1 -122433 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 217-11 chr17 67169477 67169781 + 1.33333 NA intron (NM_001330447, intron 13 of 32) MSTD|LTR|ERVL-MaLR -75147 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 205.666-3 chr19 10472072 10472378 + 1.33333 NA Intergenic Intergenic 19293 NM_006202 5141 Hs.89901 NM_006202 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A protein-coding 163.5-2 chr1 81972188 81972354 + 1.33333 NA intron (NM_001366002, intron 16 of 20) intron (NM_001366002, intron 16 of 20) 169818 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 229.333-27 chr4 41386219 41386485 + 1.33333 NA intron (NM_001289122, intron 1 of 25) MIR|SINE|MIR 25545 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 203.333-40 chr3 110402288 110402472 + 1.33333 NA Intergenic Charlie2a|DNA|hAT-Charlie 667579 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 337.999-2 chr19 34430708 34430995 + 1.33333 NA intron (NM_005499, intron 2 of 16) intron (NM_005499, intron 2 of 16) 2470 NM_005499 10054 Hs.631580 NM_005499 ENSG00000126261 UBA2 ARX|HRIHFB2115|SAE2 ubiquitin like modifier activating enzyme 2 protein-coding 231-2 chr1 39854962 39855181 + 1.33333 NA intron (NM_017646, intron 2 of 10) AluJb|SINE|Alu 28433 NM_017646 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 166.667-22 chr17 10606627 10606826 + 1.33333 NA intron (NR_125367, intron 6 of 10) FRAM|SINE|Alu 50583 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 256-23 chr5 38420394 38420760 + 1.33333 NA intron (NM_182798, intron 7 of 16) MIR|SINE|MIR 17036 NM_182798 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 301.666-12 chr3 46923673 46923911 + 1.33333 NA intron (NM_144716, intron 4 of 7) intron (NM_144716, intron 4 of 7) 41543 NM_001184744 5745 Hs.1019 NM_000316 ENSG00000160801 PTH1R EKNS|PFE|PTHR|PTHR1 parathyroid hormone 1 receptor protein-coding 314.001 chr5 41748697 41749045 + 1.33333 NA intron (NR_157114, intron 14 of 15) intron (NR_157114, intron 14 of 15) 94786 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 271.999-4 chr21 30828904 30829140 + 1.33333 NA TTS (NM_181606) TTS (NM_181606) 737 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 319.167-18 chrX 56247492 56247878 + 1.33333 NA intron (NM_001324099, intron 1 of 3) Tigger3|DNA|TcMar-Tigger 14527 NR_136704 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 322-5 chr16 56685339 56685949 + 1.33333 NA Intergenic Intergenic 3174 NM_005952 4501 Hs.374950 NM_005952 ENSG00000187193 MT1X MT-1l|MT1 metallothionein 1X protein-coding 270.333-3 chr13 80979274 80979628 + 1.33333 NA Intergenic Intergenic -38940 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 218.333-4 chr10 121304409 121304766 + 1.33333 NA Intergenic Intergenic 226727 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 377.166 chr17 59762278 59762743 + 1.33333 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 54856 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 237.667-25 chr3 31288497 31288856 + 1.33333 NA Intergenic Intergenic -126889 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 297.999 chr2 53876273 53876588 + 1.33333 NA intron (NM_014614, intron 41 of 46) L1MC5|LINE|L1 -16397 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 183.333-69 chrX 49916581 49916854 + 1.33333 NA Intergenic MER5C|DNA|hAT-Charlie -5879 NM_001272102 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 359.5-10 chr8 60804576 60804942 + 1.33333 NA intron (NM_017780, intron 6 of 37) intron (NM_017780, intron 6 of 37) 63500 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 208.666-7 chr4 168943005 168943231 + 1.33333 NA Intergenic L1M2c|LINE|L1 67137 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 210.667-56 chr9 32718897 32719067 + 1.33333 NA Intergenic L2c|LINE|L2 -64558 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 172.333-6 chr1 117534961 117535162 + 1.33333 NA Intergenic Intergenic 70709 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 272.167-24 chrX 95776671 95777102 + 1.33333 NA Intergenic Intergenic 561016 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 359.333-16 chr8 125208284 125208726 + 1.33333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 116645 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 192.5-25 chr22 46801214 46801483 + 1.33333 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 27421 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 255.666-7 chr8 85894792 85895033 + 1.33333 NA Intergenic MIR3|SINE|MIR -66970 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 436.333-3 chr2 94957644 94958330 + 1.33333 NA Intergenic Intergenic -10645 NR_037597 442028 Hs.611545 NR_037597 ENSG00000259848 LOC442028 - uncharacterized LOC442028 ncRNA 359.666-2 chr10 58306885 58307377 + 1.33333 NA Intergenic HAL1|LINE|L1 22548 NR_158219 112268068 Hs.586671 NR_158219 LOC112268068 - uncharacterized LOC112268068 ncRNA 279.666-11 chr9 12768094 12768342 + 1.33333 NA intron (NR_125775, intron 2 of 3) A-rich|Low_complexity|Low_complexity -6802 NM_203403 286343 Hs.445356 NM_203403 ENSG00000153714 LURAP1L C9orf150|HYST0841|LRAP35b|bA3L8.2 leucine rich adaptor protein 1 like protein-coding 274.501-2 chr13 30430203 30430447 + 1.33333 NA TTS (NM_001355247) TTS (NM_001355247) 7832 NM_001355247 171222 NM_001355247 ENSG00000236444 UBE2L5 UBCH7N2|UBE2L5P ubiquitin conjugating enzyme E2 L5 protein-coding 276.667-9 chr14 45109628 45109987 + 1.33333 NA intron (NM_017922, intron 8 of 13) intron (NM_017922, intron 8 of 13) -1068 NR_003691 100113389 Hs.712501 NR_003691 ENSG00000239043 SNORD127 - small nucleolar RNA, C/D box 127 snoRNA 280.499 chr12 106224359 106224714 + 1.33333 NA Intergenic Intergenic 23484 NM_006825 10970 Hs.74368 NM_006825 ENSG00000136026 CKAP4 CLIMP-63|ERGIC-63|p63 cytoskeleton associated protein 4 protein-coding 274-6 chr10 120226854 120227240 + 1.33333 NA Intergenic MIR3|SINE|MIR 128176 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 292.833-9 chr5 27124204 27125083 + 1.33333 NA Intergenic Intergenic -86057 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 216-26 chr2 149336112 149336300 + 1.33333 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 5619 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 332.666-4 chr8 133296965 133297635 + 1.33333 NA promoter-TSS (NM_001258432) promoter-TSS (NM_001258432) 4 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 234-5 chr1 232678600 232678811 + 1.33333 NA Intergenic Intergenic -39366 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 388.333 chr1 161314142 161314838 + 1.33333 NA intron (NM_001035513, intron 1 of 3) CpG 109 NM_001035512 6391 Hs.444472 NM_003001 ENSG00000143252 SDHC CYB560|CYBL|PGL3|QPS1|SDH3 succinate dehydrogenase complex subunit C protein-coding 206.833-16 chr4 49105674 49105862 + 1.33333 NA Intergenic (CATTC)n|Satellite|Satellite 119126 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 247.333-29 chrX 154730206 154730420 + 1.33333 NA intron (NR_104114, intron 1 of 8) intron (NR_104114, intron 1 of 8) 20764 NM_001282283 139716 Hs.496982 NM_080612 ENSG00000160219 GAB3 - GRB2 associated binding protein 3 protein-coding 205.333-12 chr14 45102134 45102367 + 1.33333 NA intron (NM_017922, intron 4 of 13) L3|LINE|CR1 -8625 NR_003691 100113389 Hs.712501 NR_003691 ENSG00000239043 SNORD127 - small nucleolar RNA, C/D box 127 snoRNA 187.166 chr15 56757627 56757800 + 1.33333 NA Intergenic (GAAG)n|Simple_repeat|Simple_repeat -23627 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 288.666-2 chr10 19861277 19861513 + 1.33333 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 44963 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 224.5-18 chr2 34397315 34397596 + 1.33333 NA Intergenic Intergenic -280102 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 304.333-9 chr2 70869091 70869451 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -18600 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 209-24 chr22 44351862 44352078 + 1.33333 NA Intergenic Intergenic -39019 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 401.833 chr15 67722564 67723145 + 1.33333 NA intron (NM_002757, intron 16 of 20) intron (NM_002757, intron 16 of 20) -102655 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 309.166-3 chr2 59025111 59025654 + 1.33333 NA intron (NR_033873, intron 11 of 13) intron (NR_033873, intron 11 of 13) -192326 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 343.999-2 chr16 52103648 52103909 + 1.33333 NA Intergenic Intergenic 18497 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 260.667-21 chr18 6328047 6328391 + 1.33333 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 30811 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 311.666-2 chr10 59312612 59312991 + 1.33333 NA intron (NM_001347852, intron 4 of 12) intron (NM_001347852, intron 4 of 12) 49748 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 273.333-10 chr20 9967152 9967415 + 1.33333 NA Intergenic Intergenic -19050 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 219.333-27 chr3 100891797 100891979 + 1.33333 NA intron (NM_001349332, intron 4 of 35) intron (NM_001349332, intron 4 of 35) 101602 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 511.834 chr1 17419560 17420258 + 1.33333 NA intron (NM_001136204, intron 6 of 11).2 CpG 18627 NM_001136204 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 413.333-11 chr5 122892285 122892881 + 1.33333 NA intron (NM_014035, intron 1 of 6) AluSz6|SINE|Alu 46970 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 414.334-6 chr5 86384297 86384884 + 1.33333 NA Intergenic Intergenic 102146 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 266.833-21 chr6 64266285 64266695 + 1.33333 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 459654 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 247.833-15 chr3 67498694 67499032 + 1.33333 NA intron (NM_001177599, intron 7 of 10) L1MA9|LINE|L1 155751 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 409.333 chr14 30214678 30215074 + 1.33333 NA Intergenic Intergenic -287029 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 228.333 chr1 98208396 98208760 + 1.33333 NA Intergenic L1MA2|LINE|L1 -2133 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 341.833-4 chr5 72137590 72137962 + 1.33333 NA intron (NM_005909, intron 2 of 6) intron (NM_005909, intron 2 of 6) 30301 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 296.666-11 chr6 103985862 103986235 + 1.33333 NA Intergenic Intergenic 873498 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 288.5-10 chr15 41209668 41210254 + 1.33333 NA intron (NM_152596, intron 4 of 9) AluSq2|SINE|Alu 20796 NM_152596 161829 Hs.307999 NM_152596 ENSG00000178997 EXD1 EXDL1 exonuclease 3'-5' domain containing 1 protein-coding 239.5-23 chr2 172489453 172489766 + 1.33333 NA exon (NM_001365529, exon 20 of 25) exon (NM_001365529, exon 20 of 25) -23587 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 288.333-3 chr10 94946405 94946697 + 1.33333 NA intron (NM_000771, intron 3 of 8) intron (NM_000771, intron 3 of 8) 7893 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 516-3 chr12 61490974 61491556 + 1.33333 NA Intergenic Intergenic 701574 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 226.501-2 chr22 37559680 37560021 + 1.33333 NA promoter-TSS (NM_152243) promoter-TSS (NM_152243) -630 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 250.667-21 chr2 149816247 149816555 + 1.33333 NA intron (NR_145421, intron 2 of 4) intron (NR_145421, intron 2 of 4) 42790 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 239.833-4 chr15 60287356 60287658 + 1.33333 NA Intergenic AluY|SINE|Alu 110479 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 176-42 chr8 86816546 86816805 + 1.33333 NA Intergenic Intergenic -49740 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 244.167-16 chr2 192267111 192267494 + 1.33333 NA Intergenic MIR|SINE|MIR -72369 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 166.667-18 chr16 19301999 19302188 + 1.33333 NA intron (NM_001256720, intron 2 of 4) intron (NM_001256720, intron 2 of 4) 16362 NM_001256720 728276 Hs.632180 NM_001256720 ENSG00000261210 CLEC19A - C-type lectin domain containing 19A protein-coding 194.5-22 chr15 34694926 34695084 + 1.33333 NA Intergenic L1PA14|LINE|L1 -39241 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 182-24 chr2 207607428 207607620 + 1.33333 NA intron (NM_001330133, intron 3 of 3) intron (NM_001330133, intron 3 of 3) 17464 NM_145280 151194 Hs.664764 NM_145280 ENSG00000144401 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 251.999 chr1 33055459 33055752 + 1.33333 NA Intergenic Intergenic -18694 NM_001319140 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 202.666-10 chr7 18423323 18423690 + 1.33333 NA intron (NM_001321896, intron 1 of 12) MLT1H|LTR|ERVL-MaLR -72204 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 245.333-18 chr2 135758588 135758897 + 1.33333 NA intron (NM_014607, intron 5 of 12) intron (NM_014607, intron 5 of 12) -16098 NR_163478 107985946 Hs.591242 NM_001365239 LOC107985946 - uncharacterized LOC107985946 ncRNA 244.666-4 chr12 98475653 98475909 + 1.33333 NA Intergenic Intergenic -18636 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 252-10 chr10 74826195 74826472 + 1.33333 NA promoter-TSS (NM_012330) promoter-TSS (NM_012330) -80 NM_001256469 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 266.833-17 chr4 41850945 41851261 + 1.33333 NA Intergenic L1ME3A|LINE|L1 31508 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 288-24 chr6 62365798 62366314 + 1.33333 NA Intergenic Intergenic -79829 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 243.333-22 chr2 20378985 20379252 + 1.33333 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -26865 NM_001352925 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 262-10 chr15 57131138 57131432 + 1.33333 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -88145 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 331.833 chr11 91563802 91564151 + 1.33333 NA Intergenic L1MDa|LINE|L1 -661058 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 242.333-14 chr2 113876846 113877031 + 1.33333 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -12996 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 183-31 chr2 216472317 216472637 + 1.33333 NA intron (NM_001127207, intron 14 of 17) L1ME4a|LINE|L1 -26367 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 301.667-20 chr8 110197319 110197712 + 1.33333 NA Intergenic MIRb|SINE|MIR -221744 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 222.666-10 chr8 119264775 119264959 + 1.33333 NA Intergenic MIRb|SINE|MIR -18010 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 516-6 chr4 106501849 106502709 + 1.33333 NA Intergenic Intergenic 68655 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 197.333-25 chr22 45899284 45899449 + 1.33333 NA Intergenic L1MC2|LINE|L1 77796 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 264-26 chr5 105684763 105685056 + 1.33333 NA Intergenic LTR86C|LTR|ERVL 585435 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 194.833-15 chr17 19503051 19503309 + 1.33333 NA Intergenic L1M5|LINE|L1 -30674 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 311.333-10 chr15 66506063 66506412 + 1.33333 NA intron (NM_001287823, intron 1 of 17) intron (NM_001287823, intron 1 of 17) 911 NM_017975 55055 Hs.21331 NM_017975 ENSG00000174442 ZWILCH KNTC1AP|hZwilch zwilch kinetochore protein protein-coding 296-2 chr1 174693056 174693404 + 1.33333 NA intron (NM_001366446, intron 15 of 25) L2b|LINE|L2 -7309 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 217.833-8 chr14 20632073 20632262 + 1.33333 NA Intergenic Intergenic 9524 NM_001001968 341799 Hs.513132 NM_001001968 ENSG00000181803 OR6S1 OR14-37|OR6S1Q olfactory receptor family 6 subfamily S member 1 protein-coding 204.167-18 chr3 115061837 115062114 + 1.33333 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 9439 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 181.833-4 chr14 59278818 59278957 + 1.33333 NA intron (NM_001270520, intron 2 of 24) intron (NM_001270520, intron 2 of 24) 15446 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 304.833-5 chr12 1582974 1583377 + 1.33333 NA intron (NM_152441, intron 1 of 1) intron (NM_152441, intron 1 of 1) 11406 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 166.333-43 chr4 180828570 180828830 + 1.33333 NA Intergenic Intergenic 330449 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 279.5-17 chr4 9691525 9691997 + 1.33333 NA Intergenic CpG -89873 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 233.999 chr17 75682546 75682779 + 1.33333 NA intron (NR_126037, intron 3 of 8) intron (NR_126037, intron 3 of 8) 15324 NM_013260 29115 Hs.655088 NM_013260 ENSG00000161526 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 228.333-15 chr17 77331173 77331344 + 1.33333 NA intron (NM_006640, intron 1 of 10) intron (NM_006640, intron 1 of 10) 11743 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 166.333-42 chr4 17499234 17499381 + 1.33333 NA intron (NM_001306140, intron 3 of 5) intron (NM_001306140, intron 3 of 5) 12783 NM_000320 5860 Hs.75438 NM_000320 ENSG00000151552 QDPR DHPR|HDHPR|PKU2|SDR33C1 quinoid dihydropteridine reductase protein-coding 244-38 chr8 100829692 100830170 + 1.33333 NA Intergenic Intergenic -107843 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 187.5-6 chr1 201776681 201776885 + 1.33333 NA intron (NM_001167738, intron 1 of 26) HAL1|LINE|L1 -31828 NR_031599 100302158 NR_031599 ENSG00000221028 MIR1231 MIRN1231|hsa-mir-1231 microRNA 1231 ncRNA 319.833-13 chr8 58134417 58134933 + 1.33333 NA intron (NM_147189, intron 4 of 4) intron (NM_147189, intron 4 of 4) 137426 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 246.666-6 chr22 45602875 45603166 + 1.33333 NA Intergenic Intergenic 2627 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 207.167-32 chrX 151681007 151681266 + 1.33333 NA Intergenic Intergenic -14122 NM_024082 79057 Hs.209253 NM_024082 ENSG00000130032 PRRG3 PRGP3|TMG3 proline rich and Gla domain 3 protein-coding 353-6 chr17 54209737 54210187 + 1.33333 NA Intergenic Intergenic 387035 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 276.333-8 chr3 136921000 136921352 + 1.33333 NA intron (NM_001291999, intron 1 of 3) L1MB3|LINE|L1 -9326 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 273.833-2 chr13 110089816 110090167 + 1.33333 NA Intergenic Intergenic -31711 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 228.666-11 chr7 34838833 34839041 + 1.33333 NA intron (NM_207172, intron 6 of 8) intron (NM_207172, intron 6 of 8) -4606 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 180.333-28 chr2 106230137 106230493 + 1.33333 NA Intergenic L1MC5|LINE|L1 -35976 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 713.501 chr14 25132776 25133654 + 1.33333 NA Intergenic MamGypLTR3|LTR|Gypsy -82918 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 229.333-18 chr17 46977571 46977789 + 1.33333 NA TTS (NM_203400) TTS (NM_203400) 1573 NM_203400 388394 Hs.367999 NM_203400 ENSG00000179673 RPRML - reprimo like protein-coding 278.333-25 chr9 13033874 13034117 + 1.33333 NA Intergenic L2c|LINE|L2 -61362 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 279.666-10 chr9 8877110 8877371 + 1.33333 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 19222 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 398.333-10 chr2 224961925 224962324 + 1.33333 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) -15075 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 250-8 chr18 7574574 7574843 + 1.33333 NA intron (NM_002845, intron 1 of 30) (ATTTGGA)n|Simple_repeat|Simple_repeat 7392 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 174.5-38 chr8 127283212 127283495 + 1.33333 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 38716 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 208.666-6 chr2 156370138 156370395 + 1.33333 NA Intergenic L1PA5|LINE|L1 -28146 NR_147695 440918 Hs.641142 NR_147695 FLJ46875 - uncharacterized LOC440918 ncRNA 206.167-6 chr12 39806283 39806587 + 1.33333 NA intron (NR_135051, intron 18 of 18) intron (NR_135051, intron 18 of 18) 180252 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 454.333-5 chr20 17504618 17505468 + 1.33333 NA intron (NM_001195, intron 5 of 7) intron (NM_001195, intron 5 of 7) 26336 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 404.667-3 chr18 8107877 8108213 + 1.33333 NA intron (NM_002845, intron 11 of 30) intron (NM_002845, intron 11 of 30) 258989 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 383.333-9 chr22 45006415 45006912 + 1.33333 NA intron (NM_001284296, intron 2 of 13) intron (NM_001284296, intron 2 of 13) 2240 NM_001284296 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 364-5 chr14 61673266 61673750 + 1.33333 NA Intergenic Intergenic -22005 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 188-14 chr15 57890483 57890713 + 1.33333 NA Intergenic L2a|LINE|L2 123425 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 200.333-29 chr4 148344043 148344210 + 1.33333 NA intron (NM_000901, intron 2 of 8) intron (NM_000901, intron 2 of 8) 98288 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 316.333-18 chr5 58850077 58850502 + 1.33333 NA intron (NM_138453, intron 4 of 4) intron (NM_138453, intron 4 of 4) 149609 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 182.666-8 chr7 25007803 25007967 + 1.33333 NA Intergenic Intergenic -27707 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 267.999-2 chr8 121481948 121482260 + 1.33333 NA Intergenic AluYe5|SINE|Alu -157242 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 471-6 chr5 102554793 102555448 + 1.33333 NA Intergenic Intergenic -26248 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 266.166-5 chr6 39984863 39985353 + 1.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR -50646 NM_001358530 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 183-13 chr12 60370696 60370869 + 1.33333 NA Intergenic L1MCa|LINE|L1 681412 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 242-8 chr12 122464499 122464780 + 1.33333 NA Intergenic Intergenic 36293 NM_017612 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 300.5-17 chr4 149407636 149407968 + 1.33333 NA intron (NM_001363507, intron 13 of 13) L1PB4|LINE|L1 253507 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 285.834-7 chr4 145339350 145339776 + 1.33333 NA intron (NR_147156, intron 1 of 3) intron (NR_147156, intron 1 of 3) 856 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 301.166-9 chr7 81482137 81482408 + 1.33333 NA Intergenic Intergenic 79547 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 261.667-27 chr8 6425060 6425502 + 1.33333 NA intron (NM_001172574, intron 3 of 7) intron (NM_001172574, intron 3 of 7) 18128 NM_001322045 79648 Hs.593807 NM_024596 ENSG00000147316 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 171.333-34 chr22 47920787 47921003 + 1.33333 NA Intergenic Intergenic 289221 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 303.834-5 chr3 120349410 120349800 + 1.33333 NA promoter-TSS (NM_001099678) promoter-TSS (NM_001099678) -251 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 263.499 chr9 75003071 75003300 + 1.33333 NA intron (NM_001320497, intron 3 of 7) intron (NM_001320497, intron 3 of 7) 23966 NM_001320497 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 286.833-6 chr15 56742823 56743099 + 1.33333 NA Intergenic Intergenic -8875 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 189-49 chr6 67736650 67736866 + 1.33333 NA Intergenic L1MCa|LINE|L1 -318593 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 287.333-20 chr8 116110508 116110891 + 1.33333 NA intron (NR_046215, intron 7 of 13) LTR1F|LTR|ERV1 214360 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 220.5-3 chr1 238950266 238950475 + 1.33333 NA Intergenic Intergenic -436198 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 164-14 chr12 54463400 54463551 + 1.33333 NA intron (NM_144594, intron 3 of 8) intron (NM_144594, intron 3 of 8) 10127 NM_144594 121355 Hs.524476 NM_144594 ENSG00000170627 GTSF1 Cue110|FAM112B gametocyte specific factor 1 protein-coding 288.333-18 chr8 21240504 21240941 + 1.33333 NA Intergenic L1MA4|LINE|L1 -57517 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 238.667-28 chr9 121060250 121060467 + 1.33333 NA intron (NM_001317163, intron 1 of 40) intron (NM_001317163, intron 1 of 40) -10082 NM_001735 727 Hs.494997 NM_001735 ENSG00000106804 C5 C5D|C5a|C5b|CPAMD4|ECLZB complement C5 protein-coding 266.999-2 chr10 75754531 75754760 + 1.33333 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -28116 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 188.666-7 chrX 7647769 7647973 + 1.33333 NA Intergenic Intergenic -194391 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 226-41 chr8 137320528 137320964 + 1.33333 NA Intergenic Intergenic 92842 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 288.667-20 chrY 56829249 56829557 + 1.33333 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat -124852 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 246.333-17 chr13 55801741 55801979 + 1.33333 NA Intergenic Intergenic 627406 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 355.833 chr1 153627665 153628214 + 1.33333 NA promoter-TSS (NM_006271) promoter-TSS (NM_006271) -298 NM_001024211 6284 Hs.516505 NM_005979 ENSG00000189171 S100A13 - S100 calcium binding protein A13 protein-coding 285.666-6 chr16 84002703 84002991 + 1.33333 NA TTS (NM_001329748) TTS (NM_001329748) 34199 NM_001329749 54550 Hs.140950 NM_019065 ENSG00000103154 NECAB2 EFCBP2|stip-2 N-terminal EF-hand calcium binding protein 2 protein-coding 220-3 chr11 41254023 41254341 + 1.33333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 205454 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 175.333-47 chr6 45469449 45469646 + 1.33333 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 47272 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 190-45 chr6 14271916 14272241 + 1.33333 NA Intergenic LTR8B|LTR|ERV1 13376 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 273 chr1 85582412 85582788 + 1.33333 NA exon (NM_001554, exon 4 of 5) exon (NM_001554, exon 4 of 5) 1839 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 244.5-4 chr11 130923100 130923511 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR -6818 NM_001347927 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 200-13 chr14 26843031 26843383 + 1.33333 NA Intergenic Intergenic -21087 NR_110033 101927062 NR_110033 ENSG00000257845 LINC02294 - long intergenic non-protein coding RNA 2294 ncRNA 236.166-2 chr15 98454690 98454870 + 1.33333 NA intron (NM_182562, intron 4 of 6) Tigger3b|DNA|TcMar-Tigger -33782 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 192.833-16 chr2 48226552 48226744 + 1.33333 NA Intergenic HAL1b|LINE|L1 -88034 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 209-42 chr8 88300686 88301018 + 1.33333 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 26631 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 277.5-5 chr12 6086540 6086983 + 1.33333 NA intron (NM_000552, intron 6 of 51) intron (NM_000552, intron 6 of 51) 37914 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 308.833-4 chr10 17243305 17243684 + 1.33333 NA Intergenic Intergenic -13509 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 268.667-16 chr2 2281143 2281511 + 1.33333 NA intron (NM_015025, intron 2 of 24) THE1C|LTR|ERVL-MaLR -37905 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 496.166-3 chr4 180150600 180151274 + 1.33333 NA Intergenic Intergenic 1008212 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 166.166 chr1 162781190 162781395 + 1.33333 NA 3' UTR (NM_001354982, exon 18 of 18) 3' UTR (NM_001354982, exon 18 of 18) -9410 NM_001304513 51478 Hs.492925 NM_016371 ENSG00000132196 HSD17B7 PRAP|SDR37C1 hydroxysteroid 17-beta dehydrogenase 7 protein-coding 193.333-16 chr14 24903189 24903562 + 1.33333 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 145625 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 217.666-3 chr6 80109690 80109965 + 1.33333 NA intron (NR_134945, intron 1 of 10) MIRb|SINE|MIR 3156 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 317.166 chr11 96309250 96309622 + 1.33333 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -32002 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 190.833-2 chr1 54053237 54053608 + 1.33333 NA promoter-TSS (NR_039942) promoter-TSS (NR_039942) 16 NM_001305066 9528 Hs.118947 NM_004872 ENSG00000116209 TMEM59 C1orf8|DCF1|HSPC001|PRO195|UNQ169 transmembrane protein 59 protein-coding 230.666-2 chr21 32424303 32424525 + 1.33333 NA intron (NM_001320744, intron 1 of 5) intron (NM_001320744, intron 1 of 5) 11708 NM_001286556 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 207.333-32 chr4 39798522 39798712 + 1.33333 NA Intergenic AluSx|SINE|Alu 100481 NM_001312648 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 207.333-5 chr1 161684547 161684821 + 1.33333 NA non-coding (NR_002595, exon 1 of 1) non-coding (NR_002595, exon 1 of 1) 568 NR_002595 641311 Hs.625293 NR_002595 ENSG00000213075 RPL31P11 RPL31_1_108 ribosomal protein L31 pseudogene 11 pseudo 182.5-6 chr11 61747828 61748062 + 1.33333 NA TTS (NM_006133) TTS (NM_006133) -4691 NM_001127392 745 Hs.473109 NM_013279 ENSG00000124920 MYRF 11orf9|C11orf9|CUGS|MMERV|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 326.834-10 chr4 175560563 175561058 + 1.33333 NA Intergenic Intergenic 226866 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 255.999 chr10 43667178 43667393 + 1.33333 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -18404 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 227.833-14 chr3 10370270 10370620 + 1.33333 NA intron (NM_001001331, intron 12 of 22) intron (NM_001001331, intron 12 of 22) 24117 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 241.666-3 chr11 57751621 57751802 + 1.33333 NA promoter-TSS (NM_001145101) promoter-TSS (NM_001145101) 70 NM_001145101 643376 Hs.606355 NM_001145101 ENSG00000233436 BTBD18 - BTB domain containing 18 protein-coding 294.833-7 chr4 59553450 59553871 + 1.33333 NA Intergenic MLT1J1|LTR|ERVL-MaLR 540087 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 196.5-47 chr9 35526681 35526951 + 1.33333 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) -11816 NM_001135999 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 426.5-2 chr1 159089785 159090123 + 1.33333 NA Intergenic LTR16A|LTR|ERVL -13053 NM_001348247 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 276.166 chr20 55199340 55199608 + 1.33333 NA Intergenic MER31-int|LTR|ERV1 -223569 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 314.333-11 chr7 83205614 83205940 + 1.33333 NA Intergenic (TTAT)n|Simple_repeat|Simple_repeat -42893 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 304.501-2 chr17 60598588 60599115 + 1.33333 NA Intergenic L1M5|LINE|L1 -1332 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 611.833-2 chr1 150629178 150630055 + 1.33333 NA promoter-TSS (NM_207047) promoter-TSS (NM_207047) -4 NM_004436 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding 221.333-21 chr4 106219852 106220080 + 1.33333 NA intron (NM_001290768, intron 20 of 26) intron (NM_001290768, intron 20 of 26) -95644 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 364.333-7 chr3 14780912 14781468 + 1.33333 NA Intergenic MLT1J2|LTR|ERVL-MaLR 30224 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 239.333-12 chr18 2223476 2223664 + 1.33333 NA Intergenic Intergenic 347935 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 211-29 chr2 188978871 188979342 + 1.33333 NA promoter-TSS (NR_039947) promoter-TSS (NR_039947) -945 NR_039947 100616324 NR_039947 ENSG00000283238 MIR1245B - microRNA 1245b ncRNA 497.333-3 chr22 47523610 47524187 + 1.33333 NA Intergenic L1ME3F|LINE|L1 -36787 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 315.834-8 chr9 20832670 20833070 + 1.33333 NA intron (NM_017794, intron 17 of 45) L1MA1|LINE|L1 45943 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 208-2 chr1 152043944 152044272 + 1.33333 NA Intergenic Intergenic -7104 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 226.833-11 chr2 127730350 127730616 + 1.33333 NA intron (NM_018383, intron 7 of 21) L1ME4a|LINE|L1 28986 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 318-9 chr17 30299561 30299982 + 1.33333 NA Intergenic Intergenic -7827 NM_000386 642 Hs.371914 NM_000386 ENSG00000108578 BLMH BH|BMH bleomycin hydrolase protein-coding 323.5-7 chr17 31291613 31291981 + 1.33333 NA intron (NM_001042492, intron 36 of 57) intron (NM_001042492, intron 36 of 57) 5442 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 163.333-41 chr3 112325766 112326050 + 1.33333 NA intron (NR_147411, intron 1 of 4) MIRb|SINE|MIR -6665 NM_001365854 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 324.666-5 chr21 27505570 27505898 + 1.33333 NA Intergenic Intergenic -216645 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 370.833 chr10 107855837 107856532 + 1.33333 NA Intergenic Intergenic 213109 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 494.833 chr1 212063640 212064031 + 1.33333 NA intron (NM_001286229, intron 5 of 12) L1MA4|LINE|L1 -11784 NR_026911 100131205 Hs.126774 NR_026911 ENSG00000220749 RPL21P28 RPL21_8_160 ribosomal protein L21 pseudogene 28 pseudo 427.667-7 chr22 30286781 30287300 + 1.33333 NA intron (NM_001037666, intron 4 of 8) intron (NM_001037666, intron 4 of 8) 2587 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 CASTOR1 GATSL3 cytosolic arginine sensor for mTORC1 subunit 1 protein-coding 175.5-9 chr10 100693425 100693734 + 1.33333 NA Intergenic AluJr|SINE|Alu -41817 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 215.666-5 chr8 107236490 107236770 + 1.33333 NA Intergenic Intergenic 99885 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 228.334-11 chr8 127850949 127851233 + 1.33333 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 55129 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 218.666-9 chr2 125337964 125338152 + 1.33333 NA Intergenic L1ME2|LINE|L1 779927 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 218.666-10 chr20 46305072 46305362 + 1.33333 NA intron (NM_021248, intron 1 of 11) intron (NM_021248, intron 1 of 11) 3281 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 287.5-6 chr15 63189048 63189404 + 1.33333 NA promoter-TSS (NM_016530) promoter-TSS (NM_016530) -380 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 246.667 chr1 48668053 48668397 + 1.33333 NA intron (NM_001323575, intron 6 of 12) intron (NM_001323575, intron 6 of 12) 108666 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 198.333-24 chr19 15872894 15873181 + 1.33333 NA Intergenic L1M4|LINE|L1 -8113 NM_001302493 102724279 Hs.164360 NM_001302493 LINC01835 - long intergenic non-protein coding RNA 1835 protein-coding 208.333-40 chr8 86087536 86087795 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR -11245 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 176.667-48 chr5 136174044 136174666 + 1.33333 NA intron (NM_001001420, intron 5 of 6) intron (NM_001001420, intron 5 of 6) 18807 NM_001350994 389332 Hs.127680 NM_001350994 ENSG00000271824 SMIM32 - small integral membrane protein 32 protein-coding 346.333-7 chr4 174763455 174763913 + 1.33333 NA intron (NM_006529, intron 3 of 9) intron (NM_006529, intron 3 of 9) 65563 NM_001042543 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 164.5-19 chr15 95289611 95289765 + 1.33333 NA intron (NR_034095, intron 1 of 3) intron (NR_034095, intron 1 of 3) 37412 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 205-5 chr11 113745864 113746253 + 1.33333 NA intron (NM_004724, intron 9 of 15) MER20|DNA|hAT-Charlie 27634 NM_004724 9183 Hs.503886 NM_004724 ENSG00000086827 ZW10 HZW10|KNTC1AP zw10 kinetochore protein protein-coding 431.666-3 chr6 133184617 133185351 + 1.33333 NA Intergenic Intergenic -56373 NM_001370458 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 299.666-6 chr5 15762078 15762460 + 1.33333 NA intron (NM_001278317, intron 2 of 3) MLT1F2|LTR|ERVL-MaLR -147267 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 307.834-6 chr14 21257560 21258027 + 1.33333 NA intron (NM_001077442, intron 1 of 7) AluJr4|SINE|Alu 11686 NM_031314 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 228-7 chr10 22596420 22596687 + 1.33333 NA intron (NM_005028, intron 3 of 9) intron (NM_005028, intron 3 of 9) 117555 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 297.666 chr14 103395679 103395962 + 1.33333 NA intron (NM_001128920, intron 1 of 15) intron (NM_001128920, intron 1 of 15) 10405 NM_001128918 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a|VIPB microtubule affinity regulating kinase 3 protein-coding 365.833-6 chr2 10028180 10028699 + 1.33333 NA Intergenic L2|LINE|L2 14962 NR_135558 101929882 Hs.405158 NR_135558 LOC101929882 - uncharacterized LOC101929882 ncRNA 386.666-6 chrX 39670676 39671311 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR 9777 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 207.333-6 chr1 180440917 180441183 + 1.33333 NA intron (NM_032360, intron 3 of 7) L1MB5|LINE|L1 -2660 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 399.166-4 chr6 81783363 81783837 + 1.33333 NA Intergenic L3|LINE|CR1 30592 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 491.666-3 chr5 14364410 14365138 + 1.33333 NA non-coding (NR_134469, exon 15 of 57) non-coding (NR_134469, exon 15 of 57) -99209 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 494.166 chr2 75464352 75464971 + 1.33333 NA Intergenic Intergenic -59407 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 331.167 chr1 86018461 86018905 + 1.33333 NA intron (NM_152890, intron 18 of 59) intron (NM_152890, intron 18 of 59) 137788 NR_146344 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 295-23 chr6 36359507 36360031 + 1.33333 NA intron (NM_001207035, intron 7 of 7) MIRc|SINE|MIR -22881 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 229.167-4 chr1 187629452 187629755 + 1.33333 NA Intergenic Intergenic 185975 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 415.833-4 chr19 17465963 17466441 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -4322 NM_198580 376497 Hs.363138 NM_198580 ENSG00000130304 SLC27A1 ACSVL5|FATP|FATP-1|FATP1 solute carrier family 27 member 1 protein-coding 188.333-11 chr12 56523114 56523429 + 1.33333 NA intron (NM_002898, intron 1 of 13) L1MA9|LINE|L1 1451 NM_002898 5939 Hs.505729 NM_002898 ENSG00000076067 RBMS2 SCR3 RNA binding motif single stranded interacting protein 2 protein-coding 293-17 chr5 28939439 28939957 + 1.33333 NA Intergenic L1MA3|LINE|L1 12828 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 246.666-8 chr8 12869912 12870140 + 1.33333 NA Intergenic Intergenic -58548 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 346.333 chr1 43876119 43876428 + 1.33333 NA intron (NR_073021, intron 6 of 9) intron (NR_073021, intron 6 of 9) 37651 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 319.333-9 chr2 99966791 99967183 + 1.33333 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 138596 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 193.666 chr11 14902632 14902825 + 1.33333 NA Intergenic L1ME4c|LINE|L1 -10523 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 214.834-7 chr3 193913568 193914047 + 1.33333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -69798 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 230.833-10 chr19 37475215 37475434 + 1.33333 NA intron (NM_144694, intron 2 of 4) intron (NM_144694, intron 2 of 4) 5753 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 420.666-5 chr6 57187991 57188522 + 1.33333 NA non-coding (NR_103822, exon 4 of 4) non-coding (NR_103822, exon 4 of 4) 15930 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 245-31 chr5 127051126 127051471 + 1.33333 NA TTS (NM_001164478) TTS (NM_001164478) -20740 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 174.5-22 chr20 63865127 63865330 + 1.33333 NA promoter-TSS (NM_199359) promoter-TSS (NM_199359) 0 NM_001243895 7165 Hs.473296 NM_003288 ENSG00000101150 TPD52L2 D54|TPD54 TPD52 like 2 protein-coding 311.333-27 chr9 25980085 25980500 + 1.33333 NA Intergenic Intergenic -86383 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 182.667-18 chr16 19165520 19165784 + 1.33333 NA Intergenic LTR32|LTR|ERVL -2182 NM_001330509 51760 Hs.258326 NM_016524 ENSG00000103528 SYT17 sytXVII synaptotagmin 17 protein-coding 247-6 chr11 122600715 122601111 + 1.33333 NA Intergenic AluJb|SINE|Alu -54809 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 180 chr1 5510026 5510260 + 1.33333 NA Intergenic Intergenic 352598 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 180.667-3 chr1 58744784 58745012 + 1.33333 NA Intergenic Intergenic 39149 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 275.333-14 chr5 9208791 9209158 + 1.33333 NA intron (NM_003966, intron 8 of 22) intron (NM_003966, intron 8 of 22) -155079 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 227.5-30 chr5 94310048 94310462 + 1.33333 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -198556 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 326 chr11 11813428 11813875 + 1.33333 NA Intergenic Intergenic -27772 NM_017944 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 251.333-8 chr11 14942495 14942979 + 1.33333 NA Intergenic LTR87|LTR|ERVL? 29549 NM_001033953 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 316.499 chr8 136590052 136590291 + 1.33333 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 59373 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 239-4 chr12 55681542 55681846 + 1.33333 NA promoter-TSS (NM_152637) promoter-TSS (NM_152637) -42 NM_152637 196410 Hs.51483 NM_152637 ENSG00000170439 METTL7B ALDI methyltransferase like 7B protein-coding 257-26 chr4 58443825 58444043 + 1.33333 NA Intergenic Intergenic 92394 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 234.666-4 chr16 59412135 59412363 + 1.33333 NA Intergenic Intergenic 342942 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 509-2 chr11 45110373 45110880 + 1.33333 NA intron (NM_001359633, intron 2 of 7) intron (NM_001359633, intron 2 of 7) 16613 NM_001359633 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 275.833-5 chr10 120842503 120842817 + 1.33333 NA intron (NR_033850, intron 1 of 2) L1MB8|LINE|L1 8519 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 245.333-14 chr18 11113132 11113437 + 1.33333 NA intron (NM_022068, intron 1 of 51) MER92B|LTR|ERV1 35478 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 407.666-4 chr17 29112046 29112501 + 1.33333 NA intron (NM_001346767, intron 15 of 39) MIRb|SINE|MIR 28116 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 318 chr1 36081282 36081719 + 1.33333 NA Intergenic Charlie14a|DNA|hAT-Charlie -2594 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 211.333-50 chr8 117302540 117302833 + 1.33333 NA Intergenic MER6B|DNA|TcMar-Tigger 167691 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 337.666-5 chr2 174441349 174441650 + 1.33333 NA intron (NM_001267051, intron 13 of 14) L1PA5|LINE|L1 45530 NM_001033045 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 261.5-5 chr1 85708903 85709368 + 1.33333 NA promoter-TSS (NM_001170670) promoter-TSS (NM_001170670) -702 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 335.5 chr10 27151928 27152606 + 1.33333 NA intron (NM_139312, intron 1 of 19) intron (NM_139312, intron 1 of 19) 2117 NM_014263 10730 Hs.74647 NM_014263 ENSG00000136758 YME1L1 FTSH|MEG4|OPA11|PAMP|YME1L YME1 like 1 ATPase protein-coding 317.666-7 chr6 70943060 70943733 + 1.33333 NA intron (NM_080742, intron 1 of 3) intron (NM_080742, intron 1 of 3) 13664 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 221.333-18 chr3 170413446 170413722 + 1.33333 NA Intergenic L2a|LINE|L2 -5284 NM_005602 5010 Hs.31595 NM_005602 ENSG00000013297 CLDN11 OSP|OTM claudin 11 protein-coding 365.333-6 chr13 46052849 46053394 + 1.33333 NA promoter-TSS (NM_015070) promoter-TSS (NM_015070) 273 NR_046226 100509894 Hs.626139 NR_046226 ENSG00000235903 CPB2-AS1 - CPB2 antisense RNA 1 ncRNA 348.333-5 chr5 108168838 108169168 + 1.33333 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 213095 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 290.834-12 chr5 159444662 159445149 + 1.33333 NA Intergenic Intergenic 21371 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 293.333-5 chr11 121293716 121294011 + 1.33333 NA intron (NM_001024956, intron 1 of 4) MIR|SINE|MIR 995 NM_001024956 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 247.833-14 chr3 11136818 11137146 + 1.33333 NA promoter-TSS (NM_001098213) promoter-TSS (NM_001098213) -256 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 200-15 chr14 68454271 68454493 + 1.33333 NA intron (NM_133509, intron 9 of 10) L1M4|LINE|L1 174405 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 340-9 chr19 52321704 52322109 + 1.33333 NA exon (NM_001297624, exon 4 of 4) exon (NM_001297624, exon 4 of 4) -14337 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 270.166-2 chr16 47514558 47514820 + 1.33333 NA intron (NM_001031835, intron 6 of 31) MLT2B3|LTR|ERVL 53358 NM_000293 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 292-19 chr4 64466866 64467248 + 1.33333 NA Intergenic Intergenic -57597 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 191-10 chr12 5809033 5809358 + 1.33333 NA intron (NM_001278596, intron 7 of 25) intron (NM_001278596, intron 7 of 25) 136064 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 239.333-30 chr7 8391878 8392166 + 1.33333 NA Intergenic (T)n|Simple_repeat|Simple_repeat -41587 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 317.833-9 chr3 116128571 116129322 + 1.33333 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -223820 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 313.666-3 chr18 471214 471629 + 1.33333 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 29280 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 181-21 chr18 58323555 58323926 + 1.33333 NA intron (NM_001144965, intron 8 of 30) intron (NM_001144965, intron 8 of 30) 102169 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 170.666-8 chr8 58886998 58887252 + 1.33333 NA intron (NM_014729, intron 3 of 8) L1M5|LINE|L1 -227272 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 637.833 chr2 38947095 38948050 + 1.33333 NA intron (NM_001145451, intron 8 of 15) AluJr|SINE|Alu 12772 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 227.334-10 chr17 73657448 73657692 + 1.33333 NA Intergenic Intergenic -13125 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 196-31 chr3 45688137 45688368 + 1.33333 NA intron (NR_033947, intron 1 of 2) CpG 630 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 276.167-8 chr14 47412235 47412621 + 1.33333 NA intron (NM_001113498, intron 1 of 16) AluJr|SINE|Alu -69182 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 197.333-4 chr10 36577160 36577643 + 1.33333 NA Intergenic Intergenic -548456 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 229.5-2 chr1 113519150 113519385 + 1.33333 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 128752 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 189.5-15 chr17 39100232 39100584 + 1.33333 NA intron (NM_020405, intron 7 of 13) AluSx1|SINE|Alu 43389 NR_036551 100131347 Hs.676510 NR_036551 ENSG00000263818 RDM1P5 - RDM1 pseudogene 5 pseudo 259.666-6 chr5 22745098 22745570 + 1.33333 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 108010 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 304.666-2 chr5 162209207 162209621 + 1.33333 NA Intergenic LTR16C|LTR|ERVL 141772 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 177.666 chr18 11736081 11736325 + 1.33333 NA intron (NM_182978, intron 1 of 11) AluJr|SINE|Alu -15269 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 187.166-2 chr17 41458607 41459001 + 1.33333 NA TTS (NM_002278) TTS (NM_002278) 8582 NM_002278 3882 Hs.41752 NM_002278 ENSG00000108759 KRT32 HA2|HKA2|KRTHA2|hHa2 keratin 32 protein-coding 514.833-2 chr6 37220225 37220998 + 1.33333 NA intron (NM_145316, intron 1 of 3) L1MEd|LINE|L1 36988 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 247.666-9 chr8 81477508 81477743 + 1.33333 NA TTS (NM_001442) TTS (NM_001442) 5608 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 256.166-3 chr2 142603950 142604223 + 1.33333 NA Intergenic Intergenic -273578 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 357.333-12 chr6 72273587 72273991 + 1.33333 NA intron (NM_001350414, intron 15 of 24) intron (NM_001350414, intron 15 of 24) 56848 NM_001350473 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 200.833-12 chr14 73851355 73851992 + 1.33333 NA promoter-TSS (NR_163921) promoter-TSS (NR_163921) -158 NM_001371335 337.166-3 chr5 152443441 152443805 + 1.33333 NA Intergenic Intergenic -38344 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 318.5-3 chr13 50899835 50900303 + 1.33333 NA intron (NR_046552, intron 1 of 2) intron (NR_046552, intron 1 of 2) -9609 NM_024570 79621 Hs.306291 NM_024570 ENSG00000136104 RNASEH2B AGS2|DLEU8 ribonuclease H2 subunit B protein-coding 197.5-13 chr14 75566112 75566306 + 1.33333 NA Intergenic (CTTC)n|Simple_repeat|Simple_repeat -12411 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 217-18 chr2 196487820 196488178 + 1.33333 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 104984 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 197.666-5 chr4 45528619 45528871 + 1.33333 NA Intergenic Intergenic 595309 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 323 chr1 241704248 241704647 + 1.33333 NA intron (NM_001367482, intron 8 of 27) intron (NM_001367482, intron 8 of 27) 52166 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 345.833-11 chr3 38655891 38656289 + 1.33333 NA Intergenic MIRb|SINE|MIR -6403 NM_001354701 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 296.834-5 chr17 57599072 57599581 + 1.33333 NA intron (NM_001322250, intron 8 of 13) intron (NM_001322250, intron 8 of 13) 9086 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 190.166 chr12 21549876 21550083 + 1.33333 NA intron (NM_021957, intron 11 of 15) L1MC4a|LINE|L1 22054 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 284.166-2 chr1 202184837 202185081 + 1.33333 NA intron (NR_002930, intron 15 of 21) intron (NR_002930, intron 15 of 21) -9031 NM_001017403 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 304.667-6 chr15 70729137 70729597 + 1.33333 NA intron (NM_018003, intron 1 of 18) L1PA16|LINE|L1 -27085 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 191.5 chr1 24970563 24970842 + 1.33333 NA Intergenic Intergenic -5692 NM_001320672 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC RUNX family transcription factor 3 protein-coding 179.5-23 chr19 16871708 16871975 + 1.33333 NA intron (NM_001297595, intron 14 of 18) L1MB5|LINE|L1 8567 NM_001297597 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 269.333-19 chr5 40734476 40734802 + 1.33333 NA intron (NM_012382, intron 2 of 4) intron (NM_012382, intron 2 of 4) 21322 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 204.333-28 chr3 65021994 65022278 + 1.33333 NA Intergenic MIRb|SINE|MIR -334136 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 243.333-29 chr3 150407204 150407666 + 1.33333 NA promoter-TSS (NM_014779) promoter-TSS (NM_014779) -863 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 190.333-17 chr15 82147624 82148060 + 1.33333 NA intron (NM_001040610, intron 16 of 17) intron (NM_001040610, intron 16 of 17) 59248 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 344.334 chr1 26414163 26414492 + 1.33333 NA intron (NM_024674, intron 2 of 3) intron (NM_024674, intron 2 of 3) 3510 NM_024674 79727 Hs.86154 NM_024674 ENSG00000131914 LIN28A CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A lin-28 homolog A protein-coding 299.167-16 chr4 7070638 7071232 + 1.33333 NA Intergenic Intergenic -2871 NM_025196 80273 Hs.443723 NM_025196 ENSG00000109519 GRPEL1 GrpE|HMGE|mt-GrpE#1 GrpE like 1, mitochondrial protein-coding 330.666-3 chr20 20424896 20425216 + 1.33333 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 56952 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 203.166-3 chr4 95090506 95090905 + 1.33333 NA promoter-TSS (NM_001256794) promoter-TSS (NM_001256794) -786 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 326.999 chr2 173629393 173629686 + 1.33333 NA Intergenic Intergenic 274667 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 297.833 chr1 187967974 187968318 + 1.33333 NA Intergenic Intergenic 524518 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 277.333-15 chr14 45732730 45732974 + 1.33333 NA Intergenic Intergenic -17250 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 176.5-36 chr6 63766028 63766235 + 1.33333 NA intron (NM_001292009, intron 40 of 43) MER58A|DNA|hAT-Charlie -40705 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 288.5-14 chr18 39922534 39922972 + 1.33333 NA Intergenic L1MEd|LINE|L1 81044 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 427.667 chr1 176789910 176790286 + 1.33333 NA intron (NM_020318, intron 18 of 22) intron (NM_020318, intron 18 of 22) 239347 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 221.334-7 chr20 47452880 47453098 + 1.33333 NA Intergenic MIRb|SINE|MIR -40845 NR_146496 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 165.333-33 chr4 144578805 144579015 + 1.33333 NA Intergenic Intergenic 67109 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 215.999 chr7 148856267 148856431 + 1.33333 NA intron (NM_001203247, intron 1 of 19) L1MC3|LINE|L1 27136 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 260.166 chr1 25037935 25038164 + 1.33333 NA Intergenic Intergenic 14546 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 251.333-32 chrX 123884591 123884958 + 1.33333 NA intron (NR_037916, intron 1 of 5) intron (NR_037916, intron 1 of 5) 24607 NM_001167 331 Hs.356076 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 299.333-3 chr10 57422728 57423227 + 1.33333 NA Intergenic Intergenic -118418 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 219.667-22 chr3 83691480 83691788 + 1.33333 NA Intergenic Intergenic 1177941 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 305-13 chr4 61068727 61069203 + 1.33333 NA Intergenic MamRTE1|LINE|RTE-BovB -74691 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 307.5-27 chrX 152230383 152230841 + 1.33333 NA intron (NM_000808, intron 5 of 9) L1MB7|LINE|L1 -92034 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 213-25 chr2 145425125 145425430 + 1.33333 NA Intergenic L1MA9|LINE|L1 757310 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 172-27 chr20 7924842 7924984 + 1.33333 NA intron (NM_017545, intron 2 of 7) intron (NM_017545, intron 2 of 7) 15545 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 383.167-7 chr4 76133107 76134250 + 1.33333 NA intron (NR_103782, intron 5 of 11) intron (NR_103782, intron 5 of 11) 14719 NM_017426 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 265.166 chr10 29141832 29142085 + 1.33333 NA Intergenic Intergenic -147112 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 315.999-2 chr3 41397505 41397909 + 1.33333 NA intron (NM_001322500, intron 35 of 35) L1MC4|LINE|L1 198202 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 349.666-3 chr5 112174469 112174735 + 1.33333 NA intron (NM_001347887, intron 18 of 23) intron (NM_001347887, intron 18 of 23) 13117 NR_002922 654322 Hs.689709 NR_002922 ENSG00000238363 SNORA13 ACA13 small nucleolar RNA, H/ACA box 13 snoRNA 192.666-3 chr15 81970044 81970196 + 1.33333 NA Intergenic L1ME4b|LINE|L1 75898 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 235.333-30 chr9 98437076 98437361 + 1.33333 NA intron (NM_005458, intron 7 of 18) intron (NM_005458, intron 7 of 18) -181569 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 274.833-5 chr14 44894838 44895270 + 1.33333 NA Intergenic L1MEf|LINE|L1 -2221 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 196-17 chr19 30894676 30894898 + 1.33333 NA Intergenic Intergenic -272723 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 197.833-16 chr18 12860786 12860989 + 1.33333 NA intron (NM_080423, intron 1 of 8) intron (NM_080423, intron 1 of 8) -19925 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 238.999 chr3 80081605 80081808 + 1.33333 NA Intergenic Intergenic -313708 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 221-30 chr5 63210687 63210957 + 1.33333 NA Intergenic Intergenic 632003 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 288.5-25 chr5 141397595 141397860 + 1.33333 NA promoter-TSS (NM_018925) promoter-TSS (NM_018925) -401 NM_032099 56101 Hs.368160 NM_018925 ENSG00000276547 PCDHGB5 PCDH-GAMMA-B5 protocadherin gamma subfamily B, 5 protein-coding 508.5-2 chr8 27776115 27776688 + 1.33333 NA exon (NM_001017420, exon 3 of 11) exon (NM_001017420, exon 3 of 11) 1847 NM_001017420 157570 Hs.99480 NM_001017420 ENSG00000171320 ESCO2 2410004I17Rik|EFO2|EFO2p|RBS|hEFO2 establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 167.666-6 chr19 46792875 46793061 + 1.33333 NA Intergenic AluSz6|SINE|Alu -4374 NM_005628 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 392.332 chr2 106615941 106616283 + 1.33333 NA Intergenic L1MC2|LINE|L1 128748 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 260.833-10 chr3 132354078 132354632 + 1.33333 NA intron (NM_001292037, intron 8 of 8) intron (NM_001292037, intron 8 of 8) 36948 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 291.5-16 chr17 29145251 29145510 + 1.33333 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) -4991 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 339.833 chr1 233575900 233576212 + 1.33333 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -38050 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 196.5-49 chr9 120935253 120935609 + 1.33333 NA Intergenic Intergenic -6258 NM_001190945 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding 415.167 chr1 12118439 12119025 + 1.33333 NA intron (NM_001243, intron 8 of 14) LTR41B|LTR|ERVL -48211 NR_107000 102465836 NR_107000 ENSG00000283789 MIR7846 hsa-mir-7846 microRNA 7846 ncRNA 248-18 chr15 60906229 60906551 + 1.33333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 224821 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 344.333-9 chr4 182806576 182807024 + 1.33333 NA Intergenic CpG 110453 NM_001351747 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 350.333-6 chr4 60134755 60135272 + 1.33333 NA Intergenic Intergenic -787606 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 196.166-4 chr9 104770461 104770734 + 1.33333 NA intron (NR_130760, intron 3 of 5) intron (NR_130760, intron 3 of 5) 6468 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 177-37 chr7 3138600 3138759 + 1.33333 NA Intergenic Intergenic 19894 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 240-54 chr7 33107494 33107855 + 1.33333 NA intron (NM_203288, intron 1 of 5) intron (NM_203288, intron 1 of 5) 1730 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 253.167-14 chr20 40506531 40506895 + 1.33333 NA Intergenic Intergenic 182523 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 209.666-6 chr8 81742759 81742943 + 1.33333 NA intron (NM_152284, intron 1 of 4) intron (NM_152284, intron 1 of 4) 10403 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 240.666-4 chr14 69582342 69582819 + 1.33333 NA Intergenic FLAM_C|SINE|Alu -7709 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 477.833-4 chr6 43069689 43070179 + 1.33333 NA intron (NM_001289034, intron 6 of 15) intron (NM_001289034, intron 6 of 15) -6380 NR_072998 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 291.166-4 chr13 82330436 82330719 + 1.33333 NA Intergenic HUERS-P3-int|LTR|ERV1 -1103594 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 209.666-7 chr8 110020666 110020906 + 1.33333 NA Intergenic Intergenic -45015 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 288.666-3 chr10 51563890 51564283 + 1.33333 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 135509 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 342.666-5 chr7 30746056 30746339 + 1.33333 NA Intergenic L1MD2|LINE|L1 -5938 NR_037598 100526825 Hs.660192 NR_037598 ENSG00000254959 INMT-MINDY4 INMT-FAM188B INMT-MINDY4 readthrough (NMD candidate) ncRNA 232.667-29 chr5 23811018 23811339 + 1.33333 NA Intergenic Intergenic -140170 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 359.333-5 chr14 55500526 55500873 + 1.33333 NA Intergenic MLT1H|LTR|ERVL-MaLR -60154 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 281.667-28 chr9 38682457 38682915 + 1.33333 NA Intergenic Intergenic 61598 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 191.5-14 chr14 53278582 53278849 + 1.33333 NA Intergenic HERVL18-int|LTR|ERVL 125361 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 296-17 chr8 84766785 84767113 + 1.33333 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 61022 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 378.333-3 chr13 73208982 73209531 + 1.33333 NA Intergenic Intergenic 150251 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 208.333-23 chr2 237592157 237592463 + 1.33333 NA Intergenic LTR81A|LTR|Gypsy -1576 NM_022449 64284 Hs.44278 NM_022449 ENSG00000124839 RAB17 - RAB17, member RAS oncogene family protein-coding 376.333-14 chr8 103871036 103871521 + 1.33333 NA intron (NR_145711, intron 1 of 21) AluSx1|SINE|Alu 52058 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 234.833-14 chr2 59845001 59845435 + 1.33333 NA Intergenic Intergenic 537818 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 233.167-24 chr8 87747030 87747447 + 1.33333 NA Intergenic Intergenic 126777 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 283.333-2 chr10 126032165 126032621 + 1.33333 NA intron (NM_003474, intron 21 of 22) intron (NM_003474, intron 21 of 22) -59120 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 252.666-6 chr4 7098603 7098792 + 1.33333 NA non-coding (NR_027441, exon 2 of 2) non-coding (NR_027441, exon 2 of 2) 4679 NR_027441 730971 Hs.591718 NR_027441 LINC02447 - long intergenic non-protein coding RNA 2447 ncRNA 282.666-4 chr18 32702539 32702834 + 1.33333 NA intron (NM_020805, intron 3 of 8) intron (NM_020805, intron 3 of 8) 70337 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 224.166-4 chr5 44875725 44875997 + 1.33333 NA Intergenic LTR78|LTR|ERV1 66914 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 194.666-9 chr2 164915878 164916245 + 1.33333 NA intron (NM_001199148, intron 6 of 10) intron (NM_001199148, intron 6 of 10) 39464 NM_001351537 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 185-21 chr14 21867688 21868053 + 1.33333 NA Intergenic Intergenic -196853 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 278.999 chr7 50638012 50638231 + 1.33333 NA intron (NM_001350816, intron 6 of 17) L1PB4|LINE|L1 67180 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 191.167-22 chr5 32122946 32123474 + 1.33333 NA Intergenic Intergenic 51109 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 214-48 chr7 115917177 115917454 + 1.33333 NA Intergenic Intergenic 50998 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 301.166-7 chr5 176784292 176784633 + 1.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR -26097 NM_133369 90249 Hs.33191 NM_133369 ENSG00000113763 UNC5A UNC5H1 unc-5 netrin receptor A protein-coding 233.166-5 chr20 50946088 50946276 + 1.33333 NA intron (NM_003859, intron 3 of 8) intron (NM_003859, intron 3 of 8) 12382 NM_001317035 8813 Hs.654951 NM_003859 ENSG00000000419 DPM1 CDGIE|MPDS dolichyl-phosphate mannosyltransferase subunit 1, catalytic protein-coding 267.666-2 chr17 70127983 70128362 + 1.33333 NA intron (NM_001291622, intron 4 of 5) intron (NM_001291622, intron 4 of 5) 23327 NM_001291623 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 286.333-16 chr8 138626915 138627249 + 1.33333 NA intron (NM_152888, intron 50 of 64) intron (NM_152888, intron 50 of 64) -129352 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 227.166-7 chr3 38736757 38736927 + 1.33333 NA intron (NM_006514, intron 14 of 26) intron (NM_006514, intron 14 of 26) 57168 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 520.167-3 chr5 151081791 151082615 + 1.33333 NA intron (NM_001252390, intron 1 of 17) intron (NM_001252390, intron 1 of 17) -1119 NM_001252385 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 265.333-16 chr4 66006118 66006476 + 1.33333 NA Intergenic Intergenic -270527 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 487.999-2 chr5 17230615 17231249 + 1.33333 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 13301 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 250-11 chr2 61976497 61976748 + 1.33333 NA intron (NM_152516, intron 1 of 2) L1MC|LINE|L1 70980 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 310-8 chr12 1360136 1360602 + 1.33333 NA intron (NR_027948, intron 15 of 19) MARNA|DNA|TcMar-Mariner -140122 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 350.5-4 chr16 48245534 48246061 + 1.33333 NA intron (NM_031490, intron 1 of 14) MER33|DNA|hAT-Charlie -1209 NM_145186 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 427.833 chr14 25750842 25751408 + 1.33333 NA Intergenic Eulor2C|DNA?|DNA? -700828 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 275.666-6 chr8 56929044 56929380 + 1.33333 NA Intergenic Intergenic 64655 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 264.833-4 chr10 73247203 73247455 + 1.33333 NA promoter-TSS (NR_038373) promoter-TSS (NR_038373) -38 NR_038373 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 306.833-6 chr8 142451006 142451607 + 1.33333 NA intron (NM_001702, intron 1 of 30) CpG 1657 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 250-4 chr14 23094827 23095235 + 1.33333 NA promoter-TSS (NM_017924) promoter-TSS (NM_017924) -474 NM_017924 55017 Hs.525238 NM_017924 ENSG00000179933 C14orf119 - chromosome 14 open reading frame 119 protein-coding 242.666-12 chr2 81847560 81847901 + 1.33333 NA Intergenic MER92B|LTR|ERV1 -380784 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 198.333-22 chr19 13701421 13701635 + 1.33333 NA Intergenic GA-rich|Low_complexity|Low_complexity -30224 NM_001320565 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 219.166-3 chr2 7015298 7015674 + 1.33333 NA intron (NM_001349186, intron 4 of 7) intron (NM_001349186, intron 4 of 7) 62394 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 271.166-3 chr18 4070217 4070477 + 1.33333 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 107994 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 186.667-3 chr1 39378247 39378489 + 1.33333 NA intron (NM_012090, intron 46 of 92) intron (NM_012090, intron 46 of 92) -30705 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 192-7 chr11 101386912 101387069 + 1.33333 NA Intergenic L1ME3|LINE|L1 132915 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 305.5-7 chr11 124876398 124876729 + 1.33333 NA promoter-TSS (NM_001370359) promoter-TSS (NM_001370359) -251 NM_001370357 64221 Hs.435621 NM_022370 ENSG00000154134 ROBO3 HGPPS|HGPPS1|HGPS|RBIG1|RIG1 roundabout guidance receptor 3 protein-coding 304-16 chr2 193635084 193635470 + 1.33333 NA Intergenic L1M1|LINE|L1 -708992 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 372.333-6 chr19 7920846 7921255 + 1.33333 NA promoter-TSS (NR_030717) promoter-TSS (NR_030717) 68 NR_030717 6618 Hs.631860 NM_003083 ENSG00000104976 SNAPC2 PTFDELTA|SNAP45 small nuclear RNA activating complex polypeptide 2 protein-coding 414.167-3 chr1 229659992 229660651 + 1.33333 NA TTS (NM_001314021) TTS (NM_001314021) 34074 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 268.333 chr1 55465713 55466013 + 1.33333 NA Intergenic L2c|LINE|L2 240222 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 226.666-7 chr4 127387850 127388054 + 1.33333 NA Intergenic Intergenic -245005 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 737.666 chr1 67347120 67348269 + 1.33333 NA intron (NM_001319233, intron 9 of 15) intron (NM_001319233, intron 9 of 15) 40330 NM_001258215 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 220-12 chr17 58636954 58637171 + 1.33333 NA intron (NM_031272, intron 2 of 31) AluSx1|SINE|Alu 54993 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 209.5-31 chr6 35297696 35298150 + 1.33333 NA exon (NM_022047, exon 1 of 11) exon (NM_022047, exon 1 of 11) 105 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6 guanine nucleotide exchange factor protein-coding 261.666-9 chr3 51500220 51500584 + 1.33333 NA promoter-TSS (NM_014703) promoter-TSS (NM_014703) -387 NM_001349170 9730 Hs.716623 NM_014703 ENSG00000145041 DCAF1 RIP|VPRBP DDB1 and CUL4 associated factor 1 protein-coding 353.166-2 chr12 39920404 39920866 + 1.33333 NA intron (NM_052885, intron 4 of 9) MIR|SINE|MIR 185446 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 399.999-3 chr5 73854940 73855366 + 1.33333 NA intron (NM_001177693, intron 14 of 35) intron (NM_001177693, intron 14 of 35) 41607 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 211.833-19 chr6 57216308 57216708 + 1.33333 NA intron (NR_103822, intron 1 of 3) L1ME1|LINE|L1 4953 NM_001278668 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 221.333-20 chr4 32807966 32808359 + 1.33333 NA Intergenic L1MB5|LINE|L1 457124 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 305.833-3 chr12 24081042 24081466 + 1.33333 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -130222 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 228-11 chr12 38786804 38787016 + 1.33333 NA intron (NM_153634, intron 6 of 19) L1MA2|LINE|L1 118681 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 404.834-2 chr12 815310 815895 + 1.33333 NA intron (NM_001184985, intron 2 of 27) intron (NM_001184985, intron 2 of 27) 62679 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 600.167-5 chr4 145097966 145098502 + 1.33333 NA promoter-TSS (NM_001040876) promoter-TSS (NM_001040876) -15 NR_046345 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 239.5-19 chr2 42389499 42389764 + 1.33333 NA Intergenic L1MD3|LINE|L1 -20674 NM_001319036 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 266.833-5 chr12 104744930 104745324 + 1.33333 NA intron (NM_018413, intron 2 of 2) AluSx1|SINE|Alu 153494 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 221.666-8 chr6 157244447 157244671 + 1.33333 NA Intergenic Intergenic 79700 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 261-4 chr12 45234350 45234710 + 1.33333 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) 18435 NM_001204803 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 218.666-14 chr5 130112937 130113280 + 1.33333 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 208643 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 170.666-5 chr2 165469567 165469782 + 1.33333 NA promoter-TSS (NM_001172173) promoter-TSS (NM_001172173) -24 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 407-7 chr9 16922339 16922913 + 1.33333 NA Intergenic Intergenic -51956 NM_001317939 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 198.5-25 chr2 117500432 117500617 + 1.33333 NA Intergenic Intergenic -314167 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 186.666 chr10 4725210 4725561 + 1.33333 NA Intergenic Intergenic -47315 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 339.5-8 chr18 70339957 70340452 + 1.33333 NA intron (NR_126336, intron 3 of 3) MLT1E2|LTR|ERVL-MaLR -2024 NR_146458 102724895 NR_146458 LIVAR lnc18q22.2 liver cell viability associated lncRNA ncRNA 202.667-33 chr4 171036216 171036459 + 1.33333 NA Intergenic Intergenic -4265 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 256-10 chr13 112635877 112636101 + 1.33333 NA Intergenic Intergenic -11055 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 400.5-2 chr11 58471727 58472382 + 1.33333 NA Intergenic L1MB8|LINE|L1 -31881 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 238.166-5 chr4 172227899 172228326 + 1.33333 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -414505 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 294.166 chr10 132666201 132666487 + 1.33333 NA intron (NM_005539, intron 4 of 15) intron (NM_005539, intron 4 of 15) -14931 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 213.333-14 chr2 26943380 26943554 + 1.33333 NA intron (NM_020134, intron 11 of 12) AluJb|SINE|Alu -27170 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 232.666 chr1 44596806 44597059 + 1.33333 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 51439 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 185.666-3 chr17 55151101 55151288 + 1.33333 NA intron (NM_178509, intron 17 of 17) MLT1D|LTR|ERVL-MaLR -113766 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 180.166-2 chr8 118132619 118132805 + 1.33333 NA intron (NR_146234, intron 5 of 5) intron (NR_146234, intron 5 of 5) -20893 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 177-22 chr2 197961764 197961992 + 1.33333 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 157285 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 195.5-28 chr4 159583778 159583995 + 1.33333 NA Intergenic Intergenic 193898 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 237.666-3 chr15 67401245 67401442 + 1.33333 NA intron (NM_001031715, intron 14 of 20) intron (NM_001031715, intron 14 of 20) 119630 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 256.334-13 chr8 97804011 97804424 + 1.33333 NA intron (NM_018407, intron 1 of 6) intron (NM_018407, intron 1 of 6) 28429 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 305.499-2 chr9 28927182 28927442 + 1.33333 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -38357 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 211.333-13 chr13 59864783 59865032 + 1.33333 NA intron (NM_001258369, intron 21 of 26) intron (NM_001258369, intron 21 of 26) -147811 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 279.833-4 chr14 104973271 104973587 + 1.33333 NA intron (NM_138420, intron 1 of 6) intron (NM_138420, intron 1 of 6) -2922 NM_001350929 113146 Hs.441783 NM_138420 ENSG00000185567 AHNAK2 C14orf78 AHNAK nucleoprotein 2 protein-coding 372.333-2 chr11 47740468 47741035 + 1.33333 NA intron (NM_001318339, intron 8 of 16) AluSg|SINE|Alu -25382 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 220.999 chr5 101681469 101681634 + 1.33333 NA Intergenic Intergenic 614733 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 283.333-11 chr2 123781687 123781993 + 1.33333 NA Intergenic Intergenic 243334 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 249.999-2 chr1 153533051 153533250 + 1.33333 NA Intergenic Intergenic 2841 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA|S10A6 S100 calcium binding protein A6 protein-coding 239.333-25 chr4 103009738 103009942 + 1.33333 NA intron (NR_047515, intron 1 of 10) intron (NR_047515, intron 1 of 10) 9865 NR_047513 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 258.666-12 chr8 121096835 121097135 + 1.33333 NA Intergenic LTR8B|LTR|ERV1 -284939 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 289.333-30 chr9 928348 928766 + 1.33333 NA intron (NM_001363767, intron 4 of 4) intron (NM_001363767, intron 4 of 4) -48098 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 304-5 chr12 45762696 45763072 + 1.33333 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 33175 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 251.667-8 chr11 69587951 69588292 + 1.33333 NA Intergenic Intergenic -52984 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 199.666-7 chr16 56230401 56230741 + 1.33333 NA intron (NM_138736, intron 2 of 7) intron (NM_138736, intron 2 of 7) -14949 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 358.499 chr10 120416072 120416498 + 1.33333 NA Intergenic Intergenic -40669 NR_134516 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 195.667-4 chr10 85851313 85851795 + 1.33333 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 273823 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 194.333-23 chr2 100562162 100562398 + 1.33333 NA promoter-TSS (NM_024065) promoter-TSS (NM_024065) -713 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 255.999-2 chr15 59188052 59188255 + 1.33333 NA exon (NM_004998, exon 18 of 28) exon (NM_004998, exon 18 of 28) -16891 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 293.833-4 chr11 95835247 95835532 + 1.33333 NA exon (NM_201278, exon 17 of 17) exon (NM_201278, exon 17 of 17) 44891 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 293.333-18 chr7 1138435 1138838 + 1.33333 NA promoter-TSS (NM_001350968) promoter-TSS (NM_001350968) -379 NM_032350 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 190-12 chr11 80551690 80551948 + 1.33333 NA Intergenic Intergenic 210984 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 368-8 chr6 11495820 11496369 + 1.33333 NA Intergenic Intergenic -41655 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 281.5-11 chr2 48237446 48237747 + 1.33333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -77086 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 221.666-7 chr5 177322106 177322338 + 1.33333 NA Intergenic Intergenic -10324 NM_001142935 83463 Hs.743332 NM_031300 ENSG00000213347 MXD3 BHLHC13|MAD3|MYX MAX dimerization protein 3 protein-coding 196.667-12 chr12 45835129 45835379 + 1.33333 NA intron (NM_152641, intron 6 of 20) L1MEg|LINE|L1 105545 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 205.333-19 chr2 72907674 72907959 + 1.33333 NA Intergenic L1ME3|LINE|L1 -9703 NM_004097 2016 Hs.516090 NM_004097 ENSG00000135638 EMX1 - empty spiracles homeobox 1 protein-coding 308.833-15 chr7 18519366 18519683 + 1.33333 NA intron (NM_001204147, intron 1 of 9) L1ME3G|LINE|L1 10254 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 247.499 chr7 51429045 51429242 + 1.33333 NA Intergenic Intergenic -35887 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 311.667-7 chr17 40035264 40035692 + 1.33333 NA intron (NR_052017, intron 4 of 24) intron (NR_052017, intron 4 of 24) -7833 NR_102369 101340251 NR_102369 ENSG00000238793 SNORD124 - small nucleolar RNA, C/D box 124 snoRNA 204.666-3 chr3 27422635 27422847 + 1.33333 NA intron (NM_001258380, intron 7 of 23) intron (NM_001258380, intron 7 of 23) 34037 NM_003615 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 168.333-41 chr20 41771981 41772233 + 1.33333 NA Intergenic LTR16A1|LTR|ERVL -153730 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 238-4 chr10 36807496 36807731 + 1.33333 NA Intergenic Intergenic -318244 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 320.167-6 chr17 77960438 77960891 + 1.33333 NA Intergenic Intergenic -43573 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 315-14 chr4 31279429 31279986 + 1.33333 NA Intergenic L1MC4|LINE|L1 108563 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 399.166-6 chr8 119855662 119856189 + 1.33333 NA promoter-TSS (NM_024094) promoter-TSS (NM_024094) -31 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 274.666 chr1 180778696 180779034 + 1.33333 NA intron (NR_137330, intron 2 of 12) L2a|LINE|L2 -134032 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 312.999-2 chr3 151834862 151835129 + 1.33333 NA intron (NR_110203, intron 1 of 2) MER5B|DNA|hAT-Charlie 20879 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 173.666-4 chr3 27666266 27666418 + 1.33333 NA Intergenic L4_A_Mam|LINE|RTE-X 55981 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 377.999-2 chr5 4831879 4832301 + 1.33333 NA Intergenic GA-rich|Low_complexity|Low_complexity 58609 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 279.666-8 chr4 186201677 186201948 + 1.33333 NA intron (NM_207352, intron 7 of 10) intron (NM_207352, intron 7 of 10) 10245 NM_207352 285440 Hs.587231 NM_207352 ENSG00000145476 CYP4V2 BCD|CYP4AH1 cytochrome P450 family 4 subfamily V member 2 protein-coding 338.001 chr10 9764941 9765359 + 1.33333 NA Intergenic Intergenic -293572 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 265.666-12 chr8 20985413 20985807 + 1.33333 NA intron (NR_033894, intron 2 of 4) L4_A_Mam|LINE|RTE-X 11624 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 270-29 chr3 156865596 156865892 + 1.33333 NA intron (NM_001004316, intron 3 of 12) L2a|LINE|L2 39391 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 227.667-26 chr2 225841829 225842342 + 1.33333 NA Intergenic Intergenic -300709 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 343.501-4 chr15 68164637 68164948 + 1.33333 NA exon (NM_001320687, exon 9 of 15) exon (NM_001320687, exon 9 of 15) 41318 NM_001286694 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 196.167-32 chr5 93746978 93747145 + 1.33333 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -5461 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 203.667-38 chr5 85897336 85897672 + 1.33333 NA Intergenic L1M1|LINE|L1 -384940 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 228.5-17 chr21 19465265 19465486 + 1.33333 NA Intergenic L1ME1|LINE|L1 434380 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 164.5-35 chr20 51443397 51443628 + 1.33333 NA intron (NM_012340, intron 6 of 10) intron (NM_012340, intron 6 of 10) 9465 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 261.333-5 chr16 11158462 11158795 + 1.33333 NA intron (NM_015226, intron 21 of 22) intron (NM_015226, intron 21 of 22) 97554 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 211.333-17 chr16 22298329 22298498 + 1.33333 NA intron (NM_001258035, intron 1 of 19).2 intron (NM_001258035, intron 1 of 19).2 1004 NM_001258036 55718 Hs.460298 NM_018119 ENSG00000058600 POLR3E RPC5|SIN RNA polymerase III subunit E protein-coding 259.166-4 chr6 26032947 26033169 + 1.33333 NA promoter-TSS (NM_003537) promoter-TSS (NM_003537) 510 NM_003513 8335 Hs.248174 NM_003513 ENSG00000278463 HIST1H2AB H2A/m|H2AFM histone cluster 1 H2A family member b protein-coding 251.333-20 chr3 181120764 181121009 + 1.33333 NA intron (NR_075091, intron 2 of 7) AluSx|SINE|Alu -54258 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 322.666-4 chr11 31248985 31249397 + 1.33333 NA intron (NM_001367979, intron 8 of 38) intron (NM_001367979, intron 8 of 38) 120548 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 540.165 chr12 1790995 1791535 + 1.33333 NA TTS (NM_172364).2 TTS (NM_172364).2 -29002 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 193.666-9 chr7 62337913 62338068 + 1.33333 NA Intergenic Intergenic 966066 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 270.5-21 chr2 56751077 56751427 + 1.33333 NA Intergenic Intergenic -565482 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 247.666-6 chr2 74529734 74529973 + 1.33333 NA promoter-TSS (NM_181575) promoter-TSS (NM_181575) -147 NM_181575 550 Hs.411480 NM_181575 ENSG00000115307 AUP1 - AUP1 lipid droplet regulating VLDL assembly factor protein-coding 212.166-4 chr16 82575102 82575425 + 1.33333 NA Intergenic Intergenic -51706 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 168.667-26 chr3 2561802 2561939 + 1.33333 NA intron (NM_175607, intron 3 of 24) MER117|DNA|hAT-Charlie 323041 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 174.333-20 chr2 70293730 70294072 + 1.33333 NA promoter-TSS (NM_001317171) promoter-TSS (NM_001317171) -130 NM_001317165 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 316.999 chr10 69170442 69170684 + 1.33333 NA intron (NM_001318946, intron 7 of 7) intron (NM_001318946, intron 7 of 7) -9671 NR_136627 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 196.667-7 chr11 46210040 46210310 + 1.33333 NA Intergenic Intergenic 38220 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 335.166 chr2 53201925 53202242 + 1.33333 NA Intergenic Intergenic -499468 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 361-9 chr4 65579440 65579994 + 1.33333 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 89771 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 186.333-40 chr8 20866609 20866902 + 1.33333 NA Intergenic Intergenic -86878 NR_130773 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 260.333-4 chr14 76694664 76695099 + 1.33333 NA Intergenic Intergenic -66587 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 192.666-6 chr5 180089908 180090080 + 1.33333 NA Intergenic AluSx3|SINE|Alu -18235 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 267.666-9 chr5 78670815 78671034 + 1.33333 NA Intergenic L3b|LINE|CR1 -22152 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 212.666-8 chr9 30815111 30815406 + 1.33333 NA Intergenic Intergenic -406804 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 279.833-3 chr12 102702504 102702743 + 1.33333 NA Intergenic Intergenic 121776 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 375 chr1 200159196 200159582 + 1.33333 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 116564 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 372.333-3 chr12 80186875 80187391 + 1.33333 NA intron (NM_001368062, intron 5 of 62) intron (NM_001368062, intron 5 of 62) -22320 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 184.333-6 chr10 64377275 64377511 + 1.33333 NA Intergenic Intergenic -448135 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 290.334-13 chr8 30498070 30498608 + 1.33333 NA intron (NM_001008710, intron 4 of 8) intron (NM_001008710, intron 4 of 8) -112938 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 214.333-16 chr18 10688944 10689175 + 1.33333 NA intron (NM_022068, intron 45 of 51) intron (NM_022068, intron 45 of 51) 27126 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 192.5-28 chr3 25335415 25335786 + 1.33333 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -5202 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 219.333-7 chr10 31841550 31841855 + 1.33333 NA intron (NM_001270695, intron 7 of 18) MER47B|DNA|TcMar-Tigger 67224 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 179.333-51 chr8 121130899 121131076 + 1.33333 NA Intergenic Intergenic -318941 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 358.833-9 chr4 55097828 55098274 + 1.33333 NA intron (NM_002253, intron 17 of 29) intron (NM_002253, intron 17 of 29) 27544 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 164.666-2 chr14 23828732 23828895 + 1.33333 NA Intergenic LTR56|LTR|ERV1 -124957 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 164.333-45 chr6 162924151 162924349 + 1.33333 NA intron (NM_001080379, intron 2 of 4) L1MA5|LINE|L1 129911 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 255-22 chr20 9393717 9393942 + 1.33333 NA intron (NM_000933, intron 15 of 35) intron (NM_000933, intron 15 of 35) 86029 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 213-33 chr6 53964499 53964859 + 1.33333 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) -34211 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 303.667-9 chr2 60882714 60883143 + 1.33333 NA intron (NM_002908, intron 1 of 10) intron (NM_002908, intron 1 of 10) 1354 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 170.667 chr1 35590860 35591096 + 1.33333 NA intron (NM_178548, intron 6 of 6) intron (NM_178548, intron 6 of 6) 17664 NM_178548 339488 Hs.567844 NM_178548 ENSG00000116819 TFAP2E AP2E transcription factor AP-2 epsilon protein-coding 298.999-2 chr2 99405594 99405860 + 1.33333 NA intron (NR_135652, intron 17 of 21) intron (NR_135652, intron 17 of 21) 68338 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 197.834-6 chr10 33825927 33826197 + 1.33333 NA Intergenic MIRb|SINE|MIR -53382 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 332.166-2 chr1 61360133 61360636 + 1.33333 NA intron (NM_001134673, intron 6 of 10) MIRb|SINE|MIR -106866 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 269-26 chr6 109073625 109074001 + 1.33333 NA intron (NM_014454, intron 1 of 9) intron (NM_014454, intron 1 of 9) -20809 NM_001350659 285753 Hs.632616 NM_173830 ENSG00000183137 CEP57L1 C6orf182|bA487F23.2|cep57R centrosomal protein 57 like 1 protein-coding 402.834-2 chr1 160498762 160499237 + 1.33333 NA intron (NM_001184714, intron 1 of 7) L1P4|LINE|L1 24256 NM_052931 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 218.666-11 chr3 190616559 190616802 + 1.33333 NA intron (NR_157352, intron 5 of 10) intron (NR_157352, intron 5 of 10) 102595 NM_001167930 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 211.333-37 chr5 23121939 23122213 + 1.33333 NA Intergenic Intergenic -268732 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 463.167-5 chr7 5239957 5240653 + 1.33333 NA Intergenic Intergenic 26036 NM_001033520 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 190.666-4 chr16 85678213 85678409 + 1.33333 NA exon (NM_016095, exon 5 of 5) exon (NM_016095, exon 5 of 5) 10643 NM_016095 51659 Hs.433180 NM_016095 ENSG00000131153 GINS2 HSPC037|PSF2|Pfs2 GINS complex subunit 2 protein-coding 259.333-9 chr11 76800717 76800952 + 1.33333 NA Intergenic Intergenic 9082 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 337.667-10 chr2 49490586 49491017 + 1.33333 NA Intergenic L1MA4A|LINE|L1 -336274 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 256.666 chr16 86007487 86007722 + 1.33333 NA Intergenic L1ME1|LINE|L1 89257 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 294.333-5 chr12 64782549 64782812 + 1.33333 NA intron (NM_001330188, intron 1 of 13) intron (NM_001330188, intron 1 of 13) 1925 NM_001330188 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 378.334-7 chr7 143972681 143973140 + 1.33333 NA Intergenic Intergenic 12983 NM_012369 26211 Hs.553595 NM_012369 ENSG00000213215 OR2F1 7M1-2|OLF3|OR14-60|OR2F3|OR2F3P|OR2F4|OR2F5|OR7-139|OR7-140 olfactory receptor family 2 subfamily F member 1 (gene/pseudogene) protein-coding 448.334-3 chrX 4760471 4761026 + 1.33333 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -127176 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 245.499 chr5 67053481 67053678 + 1.33333 NA intron (NM_001297651, intron 1 of 25) intron (NM_001297651, intron 1 of 25) 48924 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 272-19 chr18 846832 847183 + 1.33333 NA Intergenic Intergenic -34765 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 320-18 chr6 143397715 143398163 + 1.33333 NA Intergenic Intergenic 44738 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 426.333-3 chr4 126084446 126084885 + 1.33333 NA Intergenic Intergenic 577406 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 207.333-48 chr7 133492077 133492420 + 1.33333 NA intron (NM_021807, intron 9 of 17) L2c|LINE|L2 201367 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 223.333-16 chr14 66766979 66767182 + 1.33333 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 259673 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 340.166-4 chr5 158943106 158943575 + 1.33333 NA intron (NM_182708, intron 5 of 14) (AC)n|Simple_repeat|Simple_repeat 154616 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 210.666-4 chr2 139253603 139253949 + 1.33333 NA Intergenic HAL1b|LINE|L1 356452 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 358.333-5 chr3 51800395 51800692 + 1.33333 NA Intergenic Intergenic -17060 NR_038214 100506840 Hs.254808 NR_038213 ENSG00000224792 IQCF4 - IQ motif containing F5 pseudogene pseudo 308.833-12 chr3 194296594 194296905 + 1.33333 NA Intergenic CpG 16055 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 218.666-2 chr14 54792926 54793221 + 1.33333 NA 3' UTR (NM_001161577, exon 9 of 9) 3' UTR (NM_001161577, exon 9 of 9) 38240 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 327.333-6 chr12 71014432 71014750 + 1.33333 NA Intergenic Intergenic -93853 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 257.5-8 chr12 54280130 54280697 + 1.33333 NA promoter-TSS (NM_031157) promoter-TSS (NM_031157) -291 NM_012117 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding 191.666-2 chr1 184819035 184819221 + 1.33333 NA intron (NM_052966, intron 8 of 13) intron (NM_052966, intron 8 of 13) -64270 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 260.833-14 chr6 27052001 27052200 + 1.33333 NA Intergenic L1MA9|LINE|L1 -31794 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 266.667-4 chr12 18217462 18217851 + 1.33333 NA Intergenic Intergenic -43884 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 242-28 chr6 49787697 49787960 + 1.33333 NA promoter-TSS (NM_138733) promoter-TSS (NM_138733) -543 NM_138733 5232 Hs.367727 NM_138733 ENSG00000170950 PGK2 HEL-S-272|PGKB|PGKPS|dJ417L20.2 phosphoglycerate kinase 2 protein-coding 229.333-5 chr10 47269483 47269708 + 1.33333 NA Intergenic L1MC3|LINE|L1 -30602 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 377.333-7 chr7 130738876 130739353 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -5081 NM_138693 136259 Hs.125240 NM_138693 ENSG00000266265 KLF14 BTEB5 Kruppel like factor 14 protein-coding 354-5 chr12 24617694 24618117 + 1.33333 NA Intergenic Intergenic -33737 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 309.333-22 chr7 35437139 35437562 + 1.33333 NA Intergenic MIR|SINE|MIR 123495 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 413.5 chr17 40398730 40399266 + 1.33333 NA intron (NM_001067, intron 25 of 34) intron (NM_001067, intron 25 of 34) 18898 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A DNA topoisomerase II alpha protein-coding 230.333-36 chrX 88650877 88651084 + 1.33333 NA Intergenic Intergenic -96245 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 207.333-51 chr8 54351955 54352191 + 1.33333 NA Intergenic Intergenic 21387 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 201.333-19 chr17 62932027 62932270 + 1.33333 NA Intergenic Intergenic -12067 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 175.333-28 chr2 65055979 65056295 + 1.33333 NA promoter-TSS (NM_001319101) promoter-TSS (NM_001319101) -279 NR_134966 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 301.333-13 chr2 187844629 187844979 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -290299 NM_001032281 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 166.166-5 chr5 89414326 89414524 + 1.33333 NA intron (NR_136221, intron 5 of 6) MLT1J|LTR|ERVL-MaLR -510320 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 382.999 chr13 110715396 110715861 + 1.33333 NA exon (NM_005537, exon 1 of 2) intron (NM_001267728, intron 1 of 1) 191 NM_001267728 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 293.333-6 chr12 50159897 50160486 + 1.33333 NA intron (NM_001331069, intron 1 of 11) AluSx|SINE|Alu 7178 NM_147190 91012 Hs.270525 NM_147190 ENSG00000139624 CERS5 LASS5|Trh4 ceramide synthase 5 protein-coding 286.166 chr2 108413242 108413555 + 1.33333 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 35444 NM_001321770 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 170.833-9 chr14 63028826 63029027 + 1.33333 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 16532 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 230-40 chr8 110642694 110642941 + 1.33333 NA Intergenic Intergenic 384616 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 381.334-3 chr3 160343382 160343898 + 1.33333 NA intron (NM_001190242, intron 7 of 18) intron (NM_001190242, intron 7 of 18) 40126 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 362.833 chr1 9867438 9867879 + 1.33333 NA intron (NM_020248, intron 5 of 5) intron (NM_020248, intron 5 of 5) 42611 NM_001012329 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 282.166 chr14 47304138 47304447 + 1.33333 NA intron (NM_001113498, intron 1 of 16) MIR3|SINE|MIR 38954 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 241.001 chr1 209807762 209808180 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -1796 NM_001206696 3664 Hs.591415 NM_006147 ENSG00000117595 IRF6 LPS|OFC6|PIT|PPS|PPS1|VWS|VWS1 interferon regulatory factor 6 protein-coding 313-14 chr8 134161543 134161922 + 1.33333 NA Intergenic Intergenic 275236 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 233.5-18 chr2 174415312 174415497 + 1.33333 NA intron (NM_024583, intron 5 of 7) intron (NM_024583, intron 5 of 7) 19674 NM_024583 79634 Hs.470679 NM_024583 ENSG00000144306 SCRN3 SES3 secernin 3 protein-coding 174.333-23 chr2 222024902 222025082 + 1.33333 NA Intergenic Intergenic -273155 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 330.667-3 chr11 103240269 103240742 + 1.33333 NA intron (NM_001377, intron 63 of 88) L2c|LINE|L2 131079 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 468.5-2 chr5 170071560 170072135 + 1.33333 NA intron (NR_156756, intron 47 of 52) L1ME3B|LINE|L1 -34050 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 170.333-19 chr14 73879972 73880141 + 1.33333 NA non-coding (NR_163921, exon 7 of 10) non-coding (NR_163921, exon 7 of 10) -6803 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 459.666-4 chr6 136845991 136846475 + 1.33333 NA intron (NM_000288, intron 5 of 9) intron (NM_000288, intron 5 of 9) 23641 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 214.167-2 chr1 61863891 61864178 + 1.33333 NA intron (NM_001350145, intron 19 of 43) intron (NM_001350145, intron 19 of 43) 17959 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 357-18 chr7 8247682 8248119 + 1.33333 NA intron (NM_001350826, intron 1 of 14) intron (NM_001350826, intron 1 of 14) 14152 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 277.833-6 chr14 50623481 50623946 + 1.33333 NA intron (NM_015915, intron 11 of 13) intron (NM_015915, intron 11 of 13) 44593 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 361.666-4 chr3 170962016 170962509 + 1.33333 NA Intergenic Intergenic -53625 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 208.166-2 chr4 159456251 159456440 + 1.33333 NA Intergenic Intergenic 188536 NM_001351728 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 216-14 chr15 26496415 26496635 + 1.33333 NA Intergenic L1MA2|LINE|L1 132565 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 274.167-12 chr6 36441282 36441657 + 1.33333 NA intron (NM_152990, intron 1 of 4) MLT1J1|LTR|ERVL-MaLR -1298 NR_104481 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 722-2 chr10 50624713 50625804 + 1.33333 NA intron (NR_126411, intron 1 of 3) CpG-2921 307 NR_126411 104355295 Hs.450493 NR_126411 SGMS1-AS1 - SGMS1 antisense RNA 1 ncRNA 240.667-31 chr6 62660652 62660947 + 1.33333 NA Intergenic Intergenic -374572 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 493.833-2 chr16 74226570 74227217 + 1.33333 NA Intergenic Intergenic -11372 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 253.167-7 chr15 98850980 98851542 + 1.33333 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 66835 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 388.666-3 chr8 142388778 142389233 + 1.33333 NA intron (NM_001366903, intron 1 of 9) L1M2|LINE|L1 14177 NM_001366902 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 231.166-2 chr6 56145337 56145578 + 1.33333 NA intron (NR_134849, intron 10 of 29) intron (NR_134849, intron 10 of 29) -53795 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 359.666 chr1 28441670 28442076 + 1.33333 NA intron (NM_023923, intron 1 of 12) AluJb|SINE|Alu 3723 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 295-21 chr5 78127871 78128236 + 1.33333 NA exon (NM_001271769, exon 17 of 27) exon (NM_001271769, exon 17 of 27) 166645 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 342.833-12 chr2 81650305 81650758 + 1.33333 NA Intergenic HERVIP10F-int|LTR|ERV1 -183585 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 168.166 chr14 47783014 47783175 + 1.33333 NA intron (NR_039996, intron 2 of 2) L1M5|LINE|L1 11920 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 566.833-2 chr8 87522629 87523389 + 1.33333 NA Intergenic LTR67B|LTR|ERVL 351006 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 202-28 chr3 148239008 148239293 + 1.33333 NA Intergenic Intergenic -41741 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 312.666-6 chr20 8535404 8535808 + 1.33333 NA intron (NM_182734, intron 3 of 32) MER20|DNA|hAT-Charlie 286902 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 263.666-2 chr2 15912221 15912496 + 1.33333 NA Intergenic Intergenic -8041 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 276-27 chr8 6909322 6909624 + 1.33333 NA Intergenic L2b|LINE|L2 16603 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin alpha 6 protein-coding 242.666-6 chr10 116437693 116437980 + 1.33333 NA intron (NM_001011709, intron 2 of 11) MER3|DNA|hAT-Charlie 9989 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 272.666-6 chr8 139998325 139998574 + 1.33333 NA intron (NM_001160372, intron 18 of 22) AluY|SINE|Alu 102086 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 193.333-39 chr20 44248151 44248378 + 1.33333 NA intron (NR_046353, intron 1 of 3) intron (NR_046353, intron 1 of 3) 956 NM_001256739 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 225-41 chr9 70021512 70021730 + 1.33333 NA Intergenic Intergenic -21960 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 244.666-3 chr1 152559333 152559581 + 1.33333 NA Intergenic Intergenic 7323 NM_178435 353145 Hs.490208 NM_178435 ENSG00000185966 LCE3E LEP17 late cornified envelope 3E protein-coding 206.667-57 chr8 119036003 119036259 + 1.33333 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -31116 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 406.833 chr1 59258750 59259226 + 1.33333 NA Intergenic L1ME3|LINE|L1 -37825 NM_001350797 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 166.666-2 chr13 83780472 83780649 + 1.33333 NA Intergenic L1PA17|LINE|L1 101833 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 168.167-32 chr5 154227277 154227514 + 1.33333 NA intron (NM_198321, intron 1 of 11) L1ME2|LINE|L1 36662 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 237.666-8 chr9 117073506 117073702 + 1.33333 NA intron (NM_014010, intron 4 of 21) L2c|LINE|L2 107597 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 377.833-7 chr8 88328415 88329349 + 1.33333 NA Intergenic Intergenic -1399 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 311.333-26 chr8 128172590 128172882 + 1.33333 NA Intergenic L1ME4a|LINE|L1 22620 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 306-14 chr5 57650035 57650528 + 1.33333 NA promoter-TSS (NR_104668) promoter-TSS (NR_104668) -379 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 218.667-38 chr8 129225781 129226086 + 1.33333 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 15307 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 221.499 chr4 87867492 87867668 + 1.33333 NA Intergenic MER106A|DNA|hAT-Charlie 32877 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 312.667-2 chr1 191549277 191549703 + 1.33333 NA Intergenic MER5A1|DNA|hAT-Charlie -320992 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 292.667-19 chr6 51914204 51914664 + 1.33333 NA intron (NM_138694, intron 37 of 66) intron (NM_138694, intron 37 of 66) 173179 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 339.666-3 chr16 83137103 83137422 + 1.33333 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -146964 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 431.333-5 chr5 82621137 82621623 + 1.33333 NA Intergenic Intergenic -218775 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 242.833-20 chr7 4845836 4846109 + 1.33333 NA intron (NM_018059, intron 2 of 14) intron (NM_018059, intron 2 of 14) -8522 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 282-10 chr12 4875225 4875722 + 1.33333 NA Intergenic Intergenic -34432 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 208-12 chr12 107465235 107465498 + 1.33333 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) -115508 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 262.667-27 chr5 109517299 109517620 + 1.33333 NA Intergenic L1MC4|LINE|L1 -107485 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 260.333-16 chr3 118704526 118704881 + 1.33333 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 62935 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 217.333-24 chr3 4816942 4817121 + 1.33333 NA intron (NM_001168272, intron 58 of 60) L1MC4|LINE|L1 -65441 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 165-14 chr12 130254589 130254838 + 1.33333 NA Intergenic Intergenic -83174 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 212.666-5 chr2 185020241 185020488 + 1.33333 NA Intergenic Intergenic 146708 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 236.5-27 chr3 170696834 170697243 + 1.33333 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -110963 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 213.333-16 chr2 134416907 134417211 + 1.33333 NA intron (NM_001371457, intron 13 of 16) L1MB4|LINE|L1 162987 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 276-21 chr5 85001100 85001533 + 1.33333 NA Intergenic Intergenic -616436 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 177-33 chr5 151224271 151224512 + 1.33333 NA promoter-TSS (NM_015621) promoter-TSS (NM_015621) -299 NM_015621 26112 Hs.655336 NM_015621 ENSG00000198624 CCDC69 - coiled-coil domain containing 69 protein-coding 255.833-3 chr10 77707789 77708112 + 1.33333 NA Intergenic L1MA2|LINE|L1 -70142 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 225.666-3 chr16 53209695 53210077 + 1.33333 NA intron (NM_001352157, intron 2 of 37) intron (NM_001352157, intron 2 of 37) 1435 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 252-28 chr3 72915758 72916095 + 1.33333 NA intron (NM_001080393, intron 2 of 6) intron (NM_001080393, intron 2 of 6) 27880 NR_138564 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 171-4 chr1 112569341 112569541 + 1.33333 NA intron (NM_017744, intron 11 of 14) L1MB7|LINE|L1 49700 NM_001308264 54879 Hs.201921 NM_017744 ENSG00000007341 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 222.167-3 chr1 95116656 95117165 + 1.33333 NA promoter-TSS (NM_152487) promoter-TSS (NM_152487) -445 NM_152487 148534 Hs.483512 NM_152487 ENSG00000152078 TLCD4 TMEM56 TLC domain containing 4 protein-coding 181.666-3 chr2 102050578 102050922 + 1.33333 NA Intergenic MIR3|SINE|MIR -19640 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 393.5 chr1 229983278 229983801 + 1.33333 NA Intergenic Intergenic -19178 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 211.333-33 chr3 196564052 196564367 + 1.33333 NA intron (NM_001345907, intron 1 of 2) intron (NM_001345907, intron 1 of 2) 4345 NM_001345918 348793 Hs.385865 NM_182627 ENSG00000185798 WDR53 - WD repeat domain 53 protein-coding 334.833-8 chr8 128948670 128949210 + 1.33333 NA Intergenic Intergenic 17061 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 192-3 chr1 53038666 53039039 + 1.33333 NA intron (NM_001007250, intron 2 of 3) intron (NM_001007250, intron 2 of 3) -23200 NM_001199081 127435 Hs.586141 NM_153703 ENSG00000174348 PODN PCAN|SLRR5A podocan protein-coding 424.999 chr11 46796266 46796653 + 1.33333 NA intron (NM_001008938, intron 12 of 43) intron (NM_001008938, intron 12 of 43) -33960 NR_003056 692108 Hs.693252 NR_003056 ENSG00000212135 SNORD67 HBII-166 small nucleolar RNA, C/D box 67 snoRNA 275.167-16 chr2 37160557 37161107 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -3785 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 344.167-10 chr7 42108288 42108860 + 1.33333 NA intron (NM_000168, intron 3 of 14) MER91A|DNA|hAT-Tip100 128635 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 275.833-11 chr17 56170874 56171161 + 1.33333 NA intron (NM_153228, intron 1 of 16) intron (NM_153228, intron 1 of 16) 17542 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 220.166 chr1 70034209 70034630 + 1.33333 NA intron (NM_001370785, intron 18 of 26) intron (NM_001370785, intron 18 of 26) 115097 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 273.999 chr14 63570411 63570643 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR -27132 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 354.666-2 chr6 132218680 132219273 + 1.33333 NA Intergenic L1MA2|LINE|L1 84998 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 329.499-2 chr6 25709948 25710231 + 1.33333 NA Intergenic LTR1A2|LTR|ERV1 16473 NM_170745 221613 Hs.406739 NM_170745 ENSG00000164508 HIST1H2AA H2AA|H2AFR|TH2A|bA317E16.2 histone cluster 1 H2A family member a protein-coding 512.667-3 chr1 151319545 151320020 + 1.33333 NA intron (NM_001369626, intron 1 of 12) intron (NM_001369626, intron 1 of 12) 7634 NM_001198775 5298 Hs.632465 NM_002651 ENSG00000143393 PI4KB NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB phosphatidylinositol 4-kinase beta protein-coding 208-16 chr16 64975543 64975731 + 1.33333 NA intron (NM_001330576, intron 7 of 11) intron (NM_001330576, intron 7 of 11) 146426 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 318.167-11 chr8 135602904 135603281 + 1.33333 NA intron (NM_006558, intron 6 of 8) L2c|LINE|L2 145636 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 169-33 chr2 186760290 186760478 + 1.33333 NA intron (NM_177454, intron 6 of 7) intron (NM_177454, intron 6 of 7) 66324 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 286 chr1 147562254 147562723 + 1.33333 NA intron (NM_004326, intron 1 of 9) L2c|LINE|L2 20987 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS BCL9 transcription coactivator protein-coding 227.667-37 chr6 130313312 130313649 + 1.33333 NA intron (NM_001258275, intron 1 of 13) HAL1|LINE|L1 52388 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 290.833 chr10 42770128 42770352 + 1.33333 NA TTS (NR_134498) TTS (NR_134498) -12555 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 183.833-10 chr14 70893111 70893256 + 1.33333 NA Intergenic Intergenic -14276 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 168-43 chr5 59479371 59479532 + 1.33333 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 107047 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 365.666-4 chr2 155372726 155373083 + 1.33333 NA Intergenic Intergenic 674209 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 309.167-7 chr14 59192516 59193107 + 1.33333 NA intron (NM_001270520, intron 1 of 24) AluYm1|SINE|Alu 4144 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 328.166-5 chr2 133361927 133362355 + 1.33333 NA intron (NM_207481, intron 3 of 17) L3|LINE|CR1 95946 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 262-29 chr9 132221960 132222250 + 1.33333 NA intron (NM_032536, intron 3 of 7) MER103C|DNA|hAT-Charlie 60047 NM_032536 84628 Hs.163642 NM_032536 ENSG00000196358 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 220.833-9 chr14 50749492 50749875 + 1.33333 NA intron (NM_016350, intron 20 of 28) L1MC4a|LINE|L1 -72114 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 417.333-4 chr13 79129604 79130040 + 1.33333 NA Intergenic Intergenic 276399 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 295.333-4 chr10 3145737 3146003 + 1.33333 NA non-coding (NR_038284, exon 4 of 4) non-coding (NR_038284, exon 4 of 4) 4269 NR_038284 100507034 Hs.665365 NR_038284 ENSG00000237399 PITRM1-AS1 - PITRM1 antisense RNA 1 ncRNA 191.333-20 chr2 107307845 107308000 + 1.33333 NA intron (NR_049853, intron 2 of 3) L1MA4A|LINE|L1 41603 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 340.333-4 chr12 11552588 11552973 + 1.33333 NA intron (NR_033890, intron 3 of 7) L1MC4|LINE|L1 4750 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 187.834-4 chr10 74723058 74723404 + 1.33333 NA Intergenic AluSz|SINE|Alu -102024 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 289.666-2 chr19 11347267 11347597 + 1.33333 NA intron (NM_001080503, intron 1 of 10) AluSq|SINE|Alu 913 NM_001080503 126075 Hs.631636 NM_001080503 ENSG00000183401 CCDC159 - coiled-coil domain containing 159 protein-coding 359.833 chr2 232611635 232612045 + 1.33333 NA intron (NM_001243252, intron 1 of 3) intron (NM_001243252, intron 1 of 3) 5783 NM_001243252 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 275.499 chr2 140723368 140723607 + 1.33333 NA intron (NM_018557, intron 35 of 90) GA-rich|Low_complexity|Low_complexity -136802 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 258.333-3 chr10 31328812 31329200 + 1.33333 NA intron (NM_001323675, intron 1 of 6) (GT)n|Simple_repeat|Simple_repeat 7346 NM_001323672 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 294.666 chr1 169781506 169781833 + 1.33333 NA Intergenic MER4D|LTR|ERV1 13020 NM_001320201 92342 Hs.33922 NM_033418 ENSG00000171806 METTL18 AsTP2|C1orf156|HPM1 methyltransferase like 18 protein-coding 196-30 chr3 23066254 23066523 + 1.33333 NA Intergenic Intergenic 136190 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 418.334-2 chr14 42223042 42223594 + 1.33333 NA Intergenic Intergenic 616462 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 366.833-6 chr6 87381930 87382782 + 1.33333 NA Intergenic Intergenic -14768 NR_026784 63914 Hs.645177 NM_022084 ENSG00000111850 LINC01590 C6orf164|dJ102H19.4 long intergenic non-protein coding RNA 1590 ncRNA 193.833-25 chr5 175509976 175510260 + 1.33333 NA exon (NM_022754, exon 4 of 11) exon (NM_022754, exon 4 of 11) 31558 NM_001322980 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 340-7 chr19 11382481 11382951 + 1.33333 NA intron (NM_000121, intron 2 of 7) AluJo|SINE|Alu 1598 NR_033663 2057 Hs.631624 NM_000121 ENSG00000187266 EPOR EPO-R erythropoietin receptor protein-coding 238-27 chr5 50958810 50959075 + 1.33333 NA Intergenic Intergenic 11245 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 226.999 chr6 114090173 114090367 + 1.33333 NA intron (NR_125845, intron 5 of 9) intron (NR_125845, intron 5 of 9) -27393 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 224.5-47 chrX 18708983 18709195 + 1.33333 NA intron (NM_152226, intron 4 of 17) intron (NM_152226, intron 4 of 17) -16402 NR_046642 100874004 NR_046642 PPEF1-AS1 - PPEF1 antisense RNA 1 ncRNA 217.666 chr2 26355484 26355740 + 1.33333 NA intron (NR_137633, intron 1 of 9) intron (NR_137633, intron 1 of 9) -8823 NM_001321971 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 249.5-4 chr11 113677351 113677643 + 1.33333 NA Intergenic Charlie15b|DNA|hAT-Charlie 28811 NM_001288750 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 262.5-26 chr6 122476627 122476972 + 1.33333 NA intron (NM_181794, intron 1 of 6) intron (NM_181794, intron 1 of 6) 4882 NM_001270393 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 248.5-24 chr4 30456431 30456896 + 1.33333 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -263706 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 212.666-6 chr20 18345792 18346332 + 1.33333 NA Intergenic AluJb|SINE|Alu -32987 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 310.499-2 chr8 106846060 106846492 + 1.33333 NA Intergenic Intergenic -76032 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 207.333-12 chr12 63282738 63283007 + 1.33333 NA Intergenic L1MEd|LINE|L1 -130062 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 306.833-5 chr8 95248912 95249274 + 1.33333 NA intron (NM_001363260, intron 4 of 4) intron (NM_001363260, intron 4 of 4) -19743 NR_038202 100616530 Hs.554328 NR_038201 ENSG00000253773 C8orf37-AS1 - C8orf37 antisense RNA 1 ncRNA 223.166-3 chr2 68883037 68883327 + 1.33333 NA Intergenic Intergenic -11785 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 274.166-2 chr17 44123757 44124024 + 1.33333 NA promoter-TSS (NM_005474) promoter-TSS (NM_005474) -249 NM_001015053 10014 Hs.438782 NM_005474 ENSG00000108840 HDAC5 HD5|NY-CO-9 histone deacetylase 5 protein-coding 357.5-4 chr12 32980243 32980758 + 1.33333 NA Intergenic Intergenic -83654 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 248.333-10 chr13 66209895 66210266 + 1.33333 NA Intergenic Intergenic -8170 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 290.333-19 chr5 41115882 41116132 + 1.33333 NA Intergenic L1MEg|LINE|L1 -44665 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 199.666-9 chr5 41352540 41352715 + 1.33333 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -91158 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 238.333-12 chr11 117026182 117026581 + 1.33333 NA intron (NM_001366687, intron 1 of 4) Tigger3a|DNA|TcMar-Tigger 72047 NM_001281749 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 194-16 chr14 71275993 71276333 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR -44313 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 246.666-4 chr2 96153119 96153374 + 1.33333 NA Intergenic Intergenic -7806 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 163.833-44 chr9 30385817 30386025 + 1.33333 NA Intergenic Intergenic 22533 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 310.5-14 chr5 177494485 177494979 + 1.33333 NA intron (NR_103804, intron 2 of 12) intron (NR_103804, intron 2 of 12) 2872 NM_005451 9260 Hs.533040 NM_005451 ENSG00000196923 PDLIM7 LMP1|LMP3 PDZ and LIM domain 7 protein-coding 421.5-6 chr7 27072594 27072985 + 1.33333 NA Intergenic Intergenic 23211 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 207.333-19 chr17 66509550 66509770 + 1.33333 NA intron (NM_002737, intron 3 of 16) MLT2B4|LTR|ERVL -92806 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 231.667-13 chr2 169992944 169993290 + 1.33333 NA intron (NM_172070, intron 25 of 38) L1MC5|LINE|L1 165609 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 328.999 chr16 54791458 54791750 + 1.33333 NA Intergenic Intergenic 56629 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 227.666-2 chr1 181434740 181435174 + 1.33333 NA Intergenic MER63A|DNA|hAT-Blackjack -48560 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 234.833-8 chr12 53989321 53989531 + 1.33333 NA exon (NM_017409, exon 2 of 2) exon (NM_017409, exon 2 of 2) -2312 NR_029617 406973 NR_029617 ENSG00000207924 MIR196A2 MIRN196-2|MIRN196A2|mir-196a-2 microRNA 196a-2 ncRNA 386.833-2 chr14 89859000 89859353 + 1.33333 NA intron (NM_001284269, intron 5 of 5) intron (NM_001284269, intron 5 of 5) 95360 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 238.5-10 chr13 38135480 38135776 + 1.33333 NA intron (NR_047500, intron 1 of 5) intron (NR_047500, intron 1 of 5) 7604 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 323.666-10 chr6 21691828 21692117 + 1.33333 NA intron (NR_015410, intron 2 of 11) intron (NR_015410, intron 2 of 11) 25559 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 385.167-7 chr15 61741826 61742519 + 1.33333 NA Intergenic MLT1A|LTR|ERVL-MaLR 12254 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 179-35 chr6 39748931 39749252 + 1.33333 NA Intergenic Intergenic -23668 NM_001351503 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 202.666-7 chr2 40972356 40972587 + 1.33333 NA Intergenic Intergenic -460036 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 249.834-6 chr17 79874854 79875093 + 1.33333 NA Intergenic L1MD2|LINE|L1 -35533 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 172.333-17 chr13 24020301 24020552 + 1.33333 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) 40624 NR_104595 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 253.333-4 chr11 40403314 40403632 + 1.33333 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -110343 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 274-20 chr3 15769135 15769595 + 1.33333 NA intron (NM_001349280, intron 2 of 26) intron (NM_001349280, intron 2 of 26) -12818 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 254.501-3 chr4 67975138 67975511 + 1.33333 NA Intergenic L1MD|LINE|L1 -11831 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 308.833 chr1 153375382 153375738 + 1.33333 NA promoter-TSS (NM_005621) promoter-TSS (NM_005621) 61 NM_005621 6283 Hs.19413 NM_005621 ENSG00000163221 S100A12 CAAF1|CAGC|CGRP|ENRAGE|MRP-6|MRP6|p6 S100 calcium binding protein A12 protein-coding 336.5-11 chr4 31190849 31191215 + 1.33333 NA intron (NR_125935, intron 2 of 4) MamSINE1|SINE|tRNA-RTE 19888 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 362-9 chr11 95849188 95849853 + 1.33333 NA intron (NM_001243571, intron 12 of 17) MIRb|SINE|MIR 59022 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 544.999-2 chr17 76867767 76868365 + 1.33333 NA promoter-TSS (NM_001199172) promoter-TSS (NM_001199172) -338 NM_001199172 146664 Hs.144531 NM_144677 ENSG00000167889 MGAT5B GnT-IX|GnT-VB alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B protein-coding 277.833 chr1 20978014 20978321 + 1.33333 NA intron (NM_003760, intron 5 of 31) intron (NM_003760, intron 5 of 31) 10265 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 282-20 chr22 45846878 45847203 + 1.33333 NA Intergenic Intergenic 86516 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 237.166-4 chr12 42307855 42308125 + 1.33333 NA Intergenic Intergenic 15869 NR_107005 102467003 NR_107005 ENSG00000278520 MIR7851 hsa-mir-7851 microRNA 7851 ncRNA 313.5-8 chr16 65330213 65330657 + 1.33333 NA intron (NR_027755, intron 7 of 8) L1MEf|LINE|L1 -153862 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 236.667-21 chr4 31805531 31805887 + 1.33333 NA Intergenic Intergenic -191670 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 307-9 chr2 53382626 53383059 + 1.33333 NA Intergenic L1MB2|LINE|L1 -384941 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 192.833-34 chr8 82139333 82139703 + 1.33333 NA Intergenic Intergenic -297232 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 166.833-34 chrX 48021387 48021558 + 1.33333 NA Intergenic Intergenic 13731 NM_001079900 729201 Hs.319319 NM_001079900 ENSG00000171478 SPACA5B LYZL5B sperm acrosome associated 5B protein-coding 272-26 chr4 98777889 98778268 + 1.33333 NA Intergenic MSTB2|LTR|ERVL-MaLR 119176 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 379.333 chr10 32734976 32735538 + 1.33333 NA intron (NM_001321115, intron 29 of 43) L1MCa|LINE|L1 166215 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 222.666-5 chr2 27853817 27854039 + 1.33333 NA intron (NM_022128, intron 2 of 7) intron (NM_022128, intron 2 of 7) -34781 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 242.833-19 chr6 69103018 69103375 + 1.33333 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 467914 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 225-22 chr22 26867388 26867599 + 1.33333 NA intron (NR_146604, intron 3 of 5) AluJr|SINE|Alu 7282 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 364.333-10 chr8 87969880 87970312 + 1.33333 NA Intergenic Intergenic -96081 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 301.333-12 chr2 116147841 116148231 + 1.33333 NA Intergenic Intergenic 804221 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 243.999-2 chr2 46062095 46062282 + 1.33333 NA intron (NM_005400, intron 10 of 14) L2b|LINE|L2 -235219 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 203.333-27 chr19 41321044 41321319 + 1.33333 NA intron (NM_001346100, intron 4 of 4) intron (NM_001346100, intron 4 of 4) 10704 NM_001346100 90324 Hs.437497 NM_052848 ENSG00000142039 CCDC97 - coiled-coil domain containing 97 protein-coding 220.666 chr10 53917014 53917264 + 1.33333 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -569091 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 223.333-38 chr5 157772017 157772275 + 1.33333 NA Intergenic Intergenic 28434 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 242.999 chr11 58662528 58662770 + 1.33333 NA Intergenic SATR1|Satellite|Satellite 39984 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 644.665 chr5 33969710 33970279 + 1.33333 NA intron (NM_001012509, intron 2 of 5) intron (NM_001012509, intron 2 of 5) 14699 NM_016180 51151 Hs.278962 NM_016180 ENSG00000164175 SLC45A2 1A1|AIM1|MATP|OCA4|SHEP5 solute carrier family 45 member 2 protein-coding 237.166-3 chr1 229095357 229095537 + 1.33333 NA Intergenic Intergenic 79354 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 248.499 chr1 49872512 49872698 + 1.33333 NA intron (NM_001323575, intron 1 of 12) MER4-int|LTR|ERV1 151349 NM_032785 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 264.833-3 chr10 35421528 35421824 + 1.33333 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 84802 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 299.333-2 chr10 32364308 32364868 + 1.33333 NA intron (NR_104163, intron 1 of 1) MIR3|SINE|MIR 14181 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 234.167-16 chr20 45812396 45812948 + 1.33333 NA promoter-TSS (NR_104037) promoter-TSS (NR_104037) 28 NM_181800 11065 Hs.93002 NM_007019 ENSG00000175063 UBE2C UBCH10|dJ447F3.2 ubiquitin conjugating enzyme E2 C protein-coding 317.5-10 chr20 7071295 7071956 + 1.33333 NA Intergenic Intergenic 182577 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 234-33 chr6 125758920 125759436 + 1.33333 NA exon (NM_012259, exon 5 of 5) exon (NM_012259, exon 5 of 5) 9546 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 303.833-15 chr8 81192362 81192640 + 1.33333 NA Intergenic Intergenic -80433 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 296.333-6 chr2 98837331 98837880 + 1.33333 NA intron (NM_207362, intron 3 of 9) intron (NM_207362, intron 3 of 9) -65707 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 199.333-27 chr2 28698033 28698335 + 1.33333 NA Intergenic (TGTG)n|Simple_repeat|Simple_repeat 38021 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 362.333 chr1 15128271 15128760 + 1.33333 NA intron (NR_027136, intron 1 of 4) MER5A|DNA|hAT-Charlie 23949 NR_027136 200197 Hs.531424 NM_182534 ENSG00000175147 TMEM51-AS1 C1orf126 TMEM51 antisense RNA 1 ncRNA 411.667-9 chr3 80425329 80425997 + 1.33333 NA Intergenic L1MA4|LINE|L1 -339234 NR_147143 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 548-4 chr9 19471738 19472475 + 1.33333 NA Intergenic Intergenic 63097 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 249.167-5 chr14 70921226 70921620 + 1.33333 NA intron (NM_014982, intron 1 of 35) AluJr4|SINE|Alu 13964 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 347.167-7 chr2 128771263 128771801 + 1.33333 NA Intergenic MER57B2|LTR|ERV1 -93068 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 302.334-9 chr3 95042178 95042570 + 1.33333 NA Intergenic Intergenic 104111 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 279-6 chr10 102210613 102210964 + 1.33333 NA Intergenic L1ME1|LINE|L1 -15511 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 284.167 chr1 72186965 72187364 + 1.33333 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 95375 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 199-6 chr10 12515042 12515258 + 1.33333 NA intron (NM_001351032, intron 3 of 11) AluSx|SINE|Alu -63603 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 433.333-6 chr22 17077684 17078112 + 1.33333 NA Intergenic AluY|SINE|Alu -7061 NM_014339 23765 Hs.48353 NM_014339 ENSG00000177663 IL17RA CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R interleukin 17 receptor A protein-coding 317.833-4 chr15 63138365 63138668 + 1.33333 NA intron (NM_032857, intron 5 of 5) intron (NM_032857, intron 5 of 5) 16655 NM_032857 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 284.501 chr2 13966465 13966721 + 1.33333 NA Intergenic L1MA9|LINE|L1 434365 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 210.666 chr1 184717443 184717705 + 1.33333 NA exon (NM_001319960, exon 12 of 21) exon (NM_001319960, exon 12 of 21) 37284 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 281.667-24 chr7 139941637 139942148 + 1.33333 NA intron (NM_001366537, intron 4 of 11) CR1_Mam|LINE|CR1 112628 NM_001314028 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 177.333-28 chr5 20445477 20445685 + 1.33333 NA intron (NM_001349558, intron 1 of 15) MER31B|LTR|ERV1 130132 NM_001349562 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 281.499 chr16 83879024 83879275 + 1.33333 NA Intergenic Intergenic -19966 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 286.999 chr12 127390510 127390769 + 1.33333 NA Intergenic Intergenic -50567 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 264.666-7 chr18 21463821 21464242 + 1.33333 NA intron (NM_001142966, intron 15 of 32) L1MC4|LINE|L1 136673 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 201.333-10 chr11 28615882 28616110 + 1.33333 NA Intergenic L1PA5|LINE|L1 -138448 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 212.166 chr1 95677459 95677674 + 1.33333 NA Intergenic Intergenic 167450 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 635.833-3 chr17 45218699 45219694 + 1.33333 NA intron (NR_147507, intron 2 of 2) intron (NR_147507, intron 2 of 2) 2569 NR_147507 339192 Hs.560498 NR_147507 ENSG00000267121 LOC339192 - uncharacterized LOC339192 ncRNA 301.666-4 chr10 62627240 62627688 + 1.33333 NA intron (NM_199451, intron 5 of 7) MIRc|SINE|MIR 107016 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 254-14 chr19 47234597 47234845 + 1.33333 NA Intergenic AluSz|SINE|Alu -2054 NM_001127240 27113 Hs.467020 NM_014417 ENSG00000105327 BBC3 JFY-1|JFY1|PUMA BCL2 binding component 3 protein-coding 321.333 chr1 23368316 23368895 + 1.33333 NA promoter-TSS (NR_033690) promoter-TSS (NR_033690) -219 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 180.667-24 chr17 13031597 13032047 + 1.33333 NA Intergenic MER102a|DNA|hAT-Charlie -13758 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 207.833-23 chr5 181268748 181268983 + 1.33333 NA intron (NR_102762, intron 1 of 2) L1ME3Cz|LINE|L1 7653 NR_102761 100507602 Hs.126768 NR_102759 ENSG00000248275 TRIM52-AS1 - TRIM52 antisense RNA 1 (head to head) ncRNA 201-8 chr14 30913741 30913917 + 1.33333 NA intron (NM_014574, intron 7 of 15) intron (NM_014574, intron 7 of 15) -24021 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 190.667 chr1 79555327 79555629 + 1.33333 NA Intergenic Intergenic -548748 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 167.833-48 chr8 132655285 132655410 + 1.33333 NA intron (NR_135912, intron 3 of 11) L1M4|LINE|L1 20198 NM_001321965 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 378.666-2 chr10 30771628 30771951 + 1.33333 NA Intergenic AluSz|SINE|Alu 48570 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 264.333-20 chr3 78506280 78506488 + 1.33333 NA Intergenic Intergenic -457421 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 356.833 chr10 16106418 16107290 + 1.33333 NA Intergenic Intergenic -246321 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 312.666-5 chr2 115702409 115702729 + 1.33333 NA intron (NM_001321912, intron 8 of 25) L1MB8|LINE|L1 358754 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 215.333-28 chr2 207166062 207166317 + 1.33333 NA promoter-TSS (NM_003709) promoter-TSS (NM_003709) -3 NR_073108 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 223.333-8 chr10 21164768 21165065 + 1.33333 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -9074 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 248.333-20 chr20 62903156 62903387 + 1.33333 NA intron (NM_001193370, intron 6 of 14) intron (NM_001193370, intron 6 of 14) -20368 NR_145839 109623463 NR_145839 SNORA117 - small nucleolar RNA, H/ACA box 117 snoRNA 403.5-9 chr8 103821720 103822329 + 1.33333 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 2804 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 238.666-5 chr2 44662109 44662350 + 1.33333 NA intron (NM_024766, intron 3 of 10) L3|LINE|CR1 276659 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 446.5-5 chr22 20903182 20903720 + 1.33333 NA Intergenic Intergenic -13956 NR_156180 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 267.333-17 chr4 43827972 43828258 + 1.33333 NA Intergenic Intergenic -188746 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 224.334-12 chr9 84551599 84552059 + 1.33333 NA Intergenic L1MCb|LINE|L1 -116629 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 412.5 chr15 62071683 62072190 + 1.33333 NA Intergenic Intergenic 4959 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 318-16 chr5 51684595 51685223 + 1.33333 NA Intergenic Intergenic 301461 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 186-32 chr3 185622190 185622443 + 1.33333 NA intron (NM_021627, intron 14 of 16) intron (NM_021627, intron 14 of 16) 36021 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO specific peptidase 2 protein-coding 234.5-36 chr7 77776966 77777284 + 1.33333 NA intron (NM_198467, intron 6 of 7) L1MEc|LINE|L1 21309 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 208.999 chr12 98578959 98579115 + 1.33333 NA Intergenic MLT1J2|LTR|ERVL-MaLR -14588 NM_005888 5250 Hs.290404 NM_002635 ENSG00000075415 SLC25A3 OK/SW-cl.48|PHC|PTP solute carrier family 25 member 3 protein-coding 288.833-16 chr6 34896112 34896450 + 1.33333 NA intron (NM_015245, intron 1 of 23) AluSz|SINE|Alu 7026 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 175.666-2 chr17 80856541 80856692 + 1.33333 NA intron (NM_020761, intron 12 of 33) intron (NM_020761, intron 12 of 33) -50984 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 252.666-4 chr17 59673538 59673762 + 1.33333 NA exon (NM_004859, exon 15 of 32) exon (NM_004859, exon 15 of 32) 33948 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 266-5 chr12 101839921 101840250 + 1.33333 NA Intergenic LTR67B|LTR|ERVL -9126 NM_024312 79158 Hs.46850 NM_024312 ENSG00000111670 GNPTAB GNPTA|ICD N-acetylglucosamine-1-phosphate transferase subunits alpha and beta protein-coding 331.5-3 chr10 49344597 49344997 + 1.33333 NA Intergenic L1MA3|LINE|L1 45627 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 181.333-3 chr10 84219091 84219274 + 1.33333 NA TTS (NM_033100) TTS (NM_033100) 6362 NM_001017924 340745 Hs.450425 NM_001017924 ENSG00000204033 LRIT2 LRRC22 leucine rich repeat, Ig-like and transmembrane domains 2 protein-coding 277.666-6 chr2 209383449 209383719 + 1.33333 NA Intergenic Intergenic -40463 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 280.666 chr14 41822109 41822489 + 1.33333 NA intron (NM_001330106, intron 2 of 4) L1PB4|LINE|L1 215443 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 375.333 chr1 169443756 169444143 + 1.33333 NA intron (NM_001300968, intron 2 of 6) intron (NM_001300968, intron 2 of 6) -16475 NM_021179 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 210.333-39 chrX 152634194 152634440 + 1.33333 NA Intergenic L1MEg|LINE|L1 -3578 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 353.333-4 chr11 111600262 111600616 + 1.33333 NA Intergenic L1MC4|LINE|L1 -2010 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 296.666-5 chr2 60706012 60706243 + 1.33333 NA Intergenic Intergenic -50141 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 449.332 chr7 155796722 155797068 + 1.33333 NA Intergenic CpG 12177 NR_132318 6469 Hs.164537 NM_000193 ENSG00000164690 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS sonic hedgehog signaling molecule protein-coding 297-16 chr22 37115107 37115531 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -5606 NM_001289000 164656 Hs.370885 NM_153609 ENSG00000187045 TMPRSS6 IRIDA transmembrane serine protease 6 protein-coding 205.001 chr10 57227509 57227774 + 1.33333 NA Intergenic L1MA4|LINE|L1 76918 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 276.666-4 chr5 52331332 52331653 + 1.33333 NA Intergenic THE1D|LTR|ERVL-MaLR 323461 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 371.666 chr18 57881606 57882025 + 1.33333 NA Intergenic (TCCT)n|Simple_repeat|Simple_repeat -78500 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 210.833-9 chr14 36574032 36574280 + 1.33333 NA Intergenic Intergenic 8458 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 508.167-2 chr10 65088331 65088968 + 1.33333 NA Intergenic Intergenic -164131 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 413.333-6 chr2 177972006 177972420 + 1.33333 NA intron (NM_001077197, intron 3 of 20) L2a|LINE|L2 -49376 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 300.499 chr9 99095484 99095753 + 1.33333 NA Intergenic Intergenic -9495 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 443.5-4 chr12 63181761 63182290 + 1.33333 NA Intergenic MIR3|SINE|MIR -29215 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 423.667-6 chr3 186242023 186242893 + 1.33333 NA intron (NM_001346, intron 20 of 24) intron (NM_001346, intron 20 of 24) 119776 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 233.166 chr10 55197413 55197679 + 1.33333 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -396255 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 253.333-2 chr10 67973595 67973965 + 1.33333 NA intron (NM_001278185, intron 15 of 23) AluSc|SINE|Alu 37103 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 193.5-54 chr9 101727619 101727872 + 1.33333 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 10835 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 417.332 chr17 9923377 9923690 + 1.33333 NA intron (NM_003644, intron 7 of 9) L1ME4b|LINE|L1 -18262 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 289.333-28 chr6 140976208 140976505 + 1.33333 NA Intergenic Intergenic 292542 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 293.5-3 chr1 73839709 73840106 + 1.33333 NA Intergenic L1MA9|LINE|L1 165228 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 817.166 chr22 23128034 23129010 + 1.33333 NA intron (NM_014433, intron 4 of 6) intron (NM_014433, intron 4 of 6) 13468 NM_014433 27156 Hs.526920 NM_014433 ENSG00000100218 RSPH14 RTDR1 radial spoke head 14 homolog protein-coding 224.333-21 chr2 103966878 103967093 + 1.33333 NA Intergenic Intergenic 441347 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 271.334-6 chr17 40192627 40193079 + 1.33333 NA promoter-TSS (NR_106927) promoter-TSS (NR_106927) -744 NR_106927 102465523 NR_106927 ENSG00000274621 MIR6867 hsa-mir-6867 microRNA 6867 ncRNA 265.666-11 chr7 114079122 114079539 + 1.33333 NA Intergenic Intergenic -6997 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 192.834-3 chr8 73659823 73659999 + 1.33333 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 86929 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 313.333 chr1 54252176 54252556 + 1.33333 NA intron (NM_018070, intron 6 of 16) intron (NM_018070, intron 6 of 16) 15923 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 304-27 chr6 153740148 153740564 + 1.33333 NA Intergenic Intergenic -270140 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 314.333-16 chr8 87734842 87735264 + 1.33333 NA Intergenic MER5A|DNA|hAT-Charlie 138962 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 200.333-35 chr6 129254537 129254870 + 1.33333 NA intron (NM_000426, intron 14 of 64) intron (NM_000426, intron 14 of 64) 371562 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 325.334-4 chr13 71152354 71152781 + 1.33333 NA intron (NR_047699, intron 2 of 3) (GT)n|Simple_repeat|Simple_repeat 137426 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 229-3 chr13 107669528 107669802 + 1.33333 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -138417 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 204 chr1 28438830 28439139 + 1.33333 NA intron (NM_023923, intron 1 of 12) intron (NM_023923, intron 1 of 12) 834 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 364.666-7 chr6 169019189 169019578 + 1.33333 NA Intergenic Intergenic 16260 NR_134622 101929460 Hs.355225 NR_134622 ENSG00000229720 LOC101929460 - uncharacterized LOC101929460 ncRNA 368.333-6 chr4 60531251 60531601 + 1.33333 NA Intergenic Intergenic -391193 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 326.666-6 chr3 119264058 119264465 + 1.33333 NA intron (NR_046574, intron 3 of 3) AluJb|SINE|Alu -23383 NM_003778 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 276.334 chr1 189238368 189238835 + 1.33333 NA Intergenic L1M5|LINE|L1 1237409 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 236-22 chr7 5549335 5549603 + 1.33333 NA Intergenic Intergenic -18868 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 268.833-16 chr4 156124129 156124502 + 1.33333 NA Intergenic L1MC1|LINE|L1 -170449 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 359.999-5 chrX 38662355 38662714 + 1.33333 NA intron (NM_004615, intron 1 of 7) intron (NM_004615, intron 1 of 7) 101056 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 237.666-7 chr5 43726572 43726760 + 1.33333 NA Intergenic Intergenic -123436 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 289.333-2 chr1 87324407 87324844 + 1.33333 NA Intergenic Intergenic -4255 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 295.167-11 chr2 163662481 163662812 + 1.33333 NA intron (NM_001321825, intron 1 of 1) THE1A-int|LTR|ERVL-MaLR 73362 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 300-20 chr6 44018663 44019005 + 1.33333 NA intron (NR_125864, intron 1 of 4) L1MEg|LINE|L1 -15184 NR_125865 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 353.5-11 chr2 189439505 189439887 + 1.33333 NA Intergenic Intergenic -1737 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 240.999 chr3 33746450 33746761 + 1.33333 NA Intergenic MSTB|LTR|ERVL-MaLR -28351 NM_001365628 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 383.666-4 chr9 26923518 26923972 + 1.33333 NA intron (NM_001321546, intron 6 of 12) intron (NM_001321546, intron 6 of 12) -23245 NM_001099223 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 433.499-2 chr3 65781982 65782389 + 1.33333 NA intron (NM_001365904, intron 1 of 24) MLT1D|LTR|ERVL-MaLR -111631 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 234.5-37 chr8 129335267 129335491 + 1.33333 NA Intergenic L3|LINE|CR1 -94139 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 210.333-27 chr4 100372239 100372863 + 1.33333 NA Intergenic Intergenic 22696 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 169-20 chr16 78813015 78813207 + 1.33333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 713457 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 188.333-32 chr5 38830458 38830637 + 1.33333 NA intron (NR_109951, intron 1 of 3) Arthur1B|DNA|hAT-Tip100 15282 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 199-42 chr6 27332859 27333056 + 1.33333 NA Intergenic Intergenic 8196 NR_045612 387316 Hs.326753 NM_032030 VN1R10P FKSG83|VNR6I1P|b24o18.2|hs6V1-1p vomeronasal 1 receptor 10 pseudogene pseudo 352-4 chr12 132615021 132615700 + 1.33333 NA Intergenic Intergenic -3416 NM_174873 22953 Hs.258580 NM_012226 ENSG00000187848 P2RX2 DFNA41|P2X2 purinergic receptor P2X 2 protein-coding 186-35 chr5 129406343 129406608 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -9328 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 232.5-27 chr5 177018332 177018816 + 1.33333 NA Intergenic Intergenic -4106 NM_001308223 23567 Hs.484259 NM_012279 ENSG00000113761 ZNF346 JAZ|Zfp346 zinc finger protein 346 protein-coding 315-12 chr3 111989040 111989581 + 1.33333 NA intron (NR_073571, intron 2 of 2) intron (NR_073571, intron 2 of 2) -9429 NM_013259 29114 Hs.169330 NM_013259 ENSG00000144834 TAGLN3 NP22|NP24|NP25 transgelin 3 protein-coding 353.667-5 chr11 46027500 46027908 + 1.33333 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 93115 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 188.667-10 chr12 56043116 56043384 + 1.33333 NA intron (NM_001029, intron 2 of 3) intron (NM_001029, intron 2 of 3) 1332 NM_001029 6231 Hs.447562 NM_001029 ENSG00000197728 RPS26 DBA10|S26|eS26 ribosomal protein S26 protein-coding 227.999 chr10 25228430 25228648 + 1.33333 NA intron (NM_020752, intron 2 of 10) L1ME4b|LINE|L1 -52263 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 189.333-45 chrX 81168926 81169086 + 1.33333 NA intron (NM_030763, intron 1 of 6) intron (NM_030763, intron 1 of 6) 32907 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 234.333-5 chr10 85043139 85043404 + 1.33333 NA Intergenic Intergenic 155634 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 355.333-3 chr18 73780021 73780376 + 1.33333 NA Intergenic Intergenic 367636 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 417-5 chr5 104570144 104570605 + 1.33333 NA Intergenic Intergenic -529100 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 219.167-6 chr12 40876395 40876693 + 1.33333 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -31813 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 180.333-36 chr22 37442741 37442950 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR -15366 NM_052906 114794 Hs.344170 NM_052906 ENSG00000166897 ELFN2 LRRC62|PPP1R29 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding 172.333-52 chr8 58290549 58290798 + 1.33333 NA Intergenic Intergenic -18572 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 259.333-28 chr7 2636616 2636859 + 1.33333 NA intron (NM_025250, intron 1 of 13) intron (NM_025250, intron 1 of 13) 4751 NM_025250 80727 Hs.440899 NM_025250 ENSG00000136295 TTYH3 - tweety family member 3 protein-coding 260.833-3 chr1 115607974 115608245 + 1.33333 NA Intergenic Intergenic -33861 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 174.166 chr21 45921237 45921430 + 1.33333 NA intron (NR_145493, intron 10 of 12) intron (NR_145493, intron 10 of 12) -51637 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 246.333-32 chr5 106193082 106193301 + 1.33333 NA Intergenic Intergenic 817823 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 177.667-19 chr16 66659905 66660153 + 1.33333 NA intron (NM_181521, intron 1 of 3) L1M5|LINE|L1 36714 NM_178818 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 187-19 chr2 163669763 163669932 + 1.33333 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 66161 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 214.667-16 chr2 68763428 68763597 + 1.33333 NA intron (NM_001364821, intron 1 of 10) L1M5|LINE|L1 -11398 NM_014882 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 167-11 chr14 48323675 48324040 + 1.33333 NA Intergenic Intergenic -528843 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 229.667-30 chr5 65623627 65623891 + 1.33333 NA promoter-TSS (NM_001243737) promoter-TSS (NM_001243737) 574 NM_001656 373 Hs.792 NM_001656 ENSG00000113595 TRIM23 ARD1|ARFD1|RNF46 tripartite motif containing 23 protein-coding 619.5-3 chr17 59688727 59689308 + 1.33333 NA intron (NM_001288653, intron 30 of 31) intron (NM_001288653, intron 30 of 31) 18581 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 290.333-8 chr16 35195301 35195551 + 1.33333 NA promoter-TSS (NR_157261) promoter-TSS (NR_157261) -333 NR_157261 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 242-23 chr3 35288402 35288795 + 1.33333 NA intron (NR_110817, intron 2 of 3) MIRc|SINE|MIR 105425 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 288.999 chr21 19298741 19298988 + 1.33333 NA Intergenic Intergenic -539052 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 312.333-15 chr2 130362524 130362804 + 1.33333 NA intron (NM_014369, intron 5 of 14) L1MEc|LINE|L1 6608 NM_014369 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase non-receptor type 18 protein-coding 269.167 chr1 191365283 191365689 + 1.33333 NA Intergenic Intergenic -136988 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 358.501 chr3 187111533 187112328 + 1.33333 NA Intergenic HAL1|LINE|L1 27566 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 173.333-17 chr2 200991924 200992137 + 1.33333 NA intron (NM_001321619, intron 10 of 11) intron (NM_001321619, intron 10 of 11) -28370 NM_006190 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 362.666-3 chr6 36875537 36876173 + 1.33333 NA intron (NM_001286636, intron 1 of 9) OldhAT1|DNA|hAT-Ac -1052 NM_016059 51645 Hs.27693 NM_016059 ENSG00000137168 PPIL1 CGI-124|CYPL1|PPIase|hCyPX peptidylprolyl isomerase like 1 protein-coding 226.667-26 chr3 4885337 4885662 + 1.33333 NA Intergenic Intergenic 21002 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 220.667-34 chr6 45478366 45478697 + 1.33333 NA intron (NM_001015051, intron 5 of 7) MIRc|SINE|MIR 56256 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 292.5-22 chr8 111892102 111892758 + 1.33333 NA Intergenic L1ME3F|LINE|L1 515791 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 271.833-10 chr20 60125077 60125394 + 1.33333 NA Intergenic Intergenic -13257 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 236 chr1 24212741 24213008 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 12634 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 270.167-13 chr4 121074162 121074547 + 1.33333 NA Intergenic L2c|LINE|L2 -1819 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 377.833 chr1 6814477 6814910 + 1.33333 NA intron (NM_001349627, intron 2 of 3) intron (NM_001349627, intron 2 of 3) 29239 NM_001195563 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 316.333-15 chr20 2421403 2421824 + 1.33333 NA intron (NM_198994, intron 10 of 12) L1MC2|LINE|L1 40712 NM_198994 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 193.5-45 chr7 6369662 6369808 + 1.33333 NA Intergenic FLAM_C|SINE|Alu -4792 NM_006908 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 164.333-13 chr12 121124480 121124702 + 1.33333 NA Intergenic Intergenic -8285 NR_033955 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 244.333-35 chr9 106952670 106952866 + 1.33333 NA intron (NM_001347997, intron 7 of 12) MIRb|SINE|MIR 89602 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 370.666 chr1 178373845 178374146 + 1.33333 NA intron (NM_004841, intron 1 of 15) intron (NM_004841, intron 1 of 15) 32544 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 270.999-3 chr9 108323993 108324351 + 1.33333 NA Intergenic Intergenic 531814 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 334.333-12 chr5 90530127 90530508 + 1.33333 NA promoter-TSS (NM_198273) promoter-TSS (NM_198273) -733 NM_198273 116068 Hs.136235 NM_198273 ENSG00000176018 LYSMD3 - LysM domain containing 3 protein-coding 202.167-23 chr2 180959700 180959980 + 1.33333 NA Intergenic Intergenic -20545 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 180.333-22 chr17 44345000 44345203 + 1.33333 NA promoter-TSS (NM_002087) promoter-TSS (NM_002087) 15 NM_002087 2896 Hs.514220 NM_002087 ENSG00000030582 GRN CLN11|GEP|GP88|PCDGF|PEPI|PGRN granulin precursor protein-coding 302.999-2 chr11 69718039 69718278 + 1.33333 NA Intergenic Intergenic -14136 NM_005117 9965 Hs.249200 NM_005117 ENSG00000162344 FGF19 - fibroblast growth factor 19 protein-coding 299-24 chrX 49879062 49879514 + 1.33333 NA promoter-TSS (NM_001145073) promoter-TSS (NM_001145073) 68 NR_026742 158572 Hs.408191 NM_001025449 ENSG00000234390 USP27X-AS1 - USP27X antisense RNA 1 (head to head) ncRNA 274.666-7 chr22 45069822 45070048 + 1.33333 NA Intergenic Intergenic -59930 NM_138415 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 419.166 chr10 33509100 33509534 + 1.33333 NA Intergenic Intergenic -174412 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 361-15 chr7 82050135 82050622 + 1.33333 NA TTS (NM_001302890) TTS (NM_001302890) 41201 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 208.333-39 chr7 7919899 7920185 + 1.33333 NA Intergenic MIRc|SINE|MIR 48710 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 190.5-40 chr5 133193521 133193711 + 1.33333 NA Intergenic Intergenic 141603 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 232.833-17 chr2 30140813 30141141 + 1.33333 NA Intergenic Intergenic -6030 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 187.5-26 chr3 79193039 79193350 + 1.33333 NA intron (NM_002941, intron 2 of 30) L2a|LINE|L2 -173735 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 168.5-36 chr5 38187565 38187728 + 1.33333 NA Intergenic L1MB1|LINE|L1 39166 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 212.833-24 chrX 55893070 55893266 + 1.33333 NA Intergenic L1MDa|LINE|L1 -14955 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 417.333-7 chr5 65742353 65742821 + 1.33333 NA intron (NM_020726, intron 1 of 12) intron (NM_020726, intron 1 of 12) 20382 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 283-5 chr14 23056207 23056641 + 1.33333 NA intron (NM_144985, intron 1 of 12) intron (NM_144985, intron 1 of 12) 1114 NM_144985 64403 Hs.155912 NM_022478 ENSG00000139880 CDH24 CDH11L cadherin 24 protein-coding 320.167 chr10 22001073 22001522 + 1.33333 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 2433 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 233.333-25 chr5 173203624 173203868 + 1.33333 NA Intergenic L1MB3|LINE|L1 31460 NM_004387 1482 Hs.54473 NM_004387 ENSG00000183072 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 253.833-4 chr16 74493487 74493920 + 1.33333 NA intron (NR_027264, intron 6 of 26) intron (NR_027264, intron 6 of 26) -72233 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 185.666-7 chr6 72587553 72587906 + 1.33333 NA Intergenic L1MD2|LINE|L1 -34114 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 219-8 chr15 70505712 70505983 + 1.33333 NA promoter-TSS (NR_146562) promoter-TSS (NR_146562) 81 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 215.333-8 chr1 214239119 214239440 + 1.33333 NA Intergenic AluSq|SINE|Alu -41880 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 318.833-5 chr4 2838624 2839111 + 1.33333 NA 3' UTR (NM_001145855, exon 13 of 13) 3' UTR (NM_001145855, exon 13 of 13) -4977 NM_001354754 118 Hs.183706 NM_001119 ENSG00000087274 ADD1 ADDA adducin 1 protein-coding 540.834 chr12 5648601 5649376 + 1.33333 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 154856 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 317.666-4 chr18 43390270 43390724 + 1.33333 NA Intergenic L1ME3|LINE|L1 -113007 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 346.667-11 chr3 481443 481893 + 1.33333 NA Intergenic Intergenic -95873 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 248.333-28 chr5 78202270 78202532 + 1.33333 NA intron (NM_003664, intron 7 of 26) LTR40A1|LTR|ERVL 92297 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 198.667-27 chr2 199664804 199664961 + 1.33333 NA Intergenic Intergenic 56814 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 217.333-10 chr11 105426175 105426438 + 1.33333 NA Intergenic L1MA4|LINE|L1 -183767 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 310.333-8 chr20 32674234 32674522 + 1.33333 NA promoter-TSS (NM_182584) promoter-TSS (NM_182584) -437 NM_182584 284805 Hs.353262 NM_182584 ENSG00000198547 C20orf203 - chromosome 20 open reading frame 203 protein-coding 269.333-8 chr16 56500667 56500918 + 1.33333 NA intron (NM_031885, intron 11 of 16) intron (NM_031885, intron 11 of 16) 19232 NM_031885 583 Hs.333738 NM_031885 ENSG00000125124 BBS2 BBS|RP74 Bardet-Biedl syndrome 2 protein-coding 238-17 chr2 12241126 12241456 + 1.33333 NA intron (NR_110196, intron 3 of 5) Tigger2a|DNA|TcMar-Tigger 42161 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 249.833-5 chr14 84323017 84323380 + 1.33333 NA Intergenic A-rich|Low_complexity|Low_complexity -948734 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 334.834 chr12 4997787 4998147 + 1.33333 NA Intergenic Intergenic -45912 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 368.499 chr5 94240532 94240903 + 1.33333 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -129018 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 224.166 chr15 66309347 66309607 + 1.33333 NA intron (NM_001323944, intron 4 of 16) MADE2|DNA|TcMar-Mariner 15662 NM_001323946 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 241.333-32 chr6 50086973 50087229 + 1.33333 NA Intergenic Intergenic -37172 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 404.833-2 chr12 6376759 6377172 + 1.33333 NA intron (NM_001270987, intron 1 of 9) intron (NM_001270987, intron 1 of 9) 392 NM_001159575 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|LIDLS3|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 299.667-7 chr2 187454592 187455011 + 1.33333 NA Intergenic L1MA4A|LINE|L1 -6549 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 178.834-8 chr7 13920124 13920510 + 1.33333 NA intron (NM_001370555, intron 8 of 12) intron (NM_001370555, intron 8 of 12) 66197 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 246.333-41 chr8 86102242 86102535 + 1.33333 NA intron (NM_152565, intron 1 of 7) intron (NM_152565, intron 1 of 7) 3478 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 209-30 chr6 41288833 41289053 + 1.33333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -2198 NR_136332 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 328-4 chr10 63289569 63289982 + 1.33333 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) -20532 NM_001318153 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 387.333-3 chr18 72855188 72855722 + 1.33333 NA intron (NM_001354021, intron 4 of 4) intron (NM_001354021, intron 4 of 4) -2073 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 367.999 chr4 121452126 121452471 + 1.33333 NA Intergenic Intergenic -71280 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 218-11 chr12 63325338 63325688 + 1.33333 NA Intergenic LTR37A|LTR|ERV1 -172703 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 321.333-5 chr13 99655790 99656108 + 1.33333 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 12890 NR_036191 100422861 NR_036191 ENSG00000263615 MIR4306 mir-4306 microRNA 4306 ncRNA 319.167-12 chr3 111768628 111769104 + 1.33333 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 36370 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 249.333-12 chr16 3021487 3022078 + 1.33333 NA TTS (NM_017885) TTS (NM_017885) 1414 NM_016639 51330 Hs.355899 NM_016639 ENSG00000006327 TNFRSF12A CD266|FN14|TWEAKR TNF receptor superfamily member 12A protein-coding 303.5-7 chr2 146804592 146804912 + 1.33333 NA Intergenic Intergenic 217695 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 224.333-2 chr1 153265662 153265839 + 1.33333 NA Intergenic L1ME3A|LINE|L1 6063 NM_000427 4014 Hs.251680 NM_000427 ENSG00000203782 LOR - loricrin protein-coding 268.333-12 chr19 51260565 51260961 + 1.33333 NA intron (NM_173635, intron 1 of 5) L1ME3B|LINE|L1 3053 NM_173635 284369 Hs.381087 NM_173635 ENSG00000179213 SIGLECL1 C19orf75|SIGLEC23P|SIGLECP7 SIGLEC family like 1 protein-coding 346.333-5 chr3 82770519 82770905 + 1.33333 NA Intergenic MER53|DNA|hAT 784570 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 282.166-5 chr5 3470389 3470888 + 1.33333 NA intron (NR_033898, intron 2 of 4) L1ME1|LINE|L1 17822 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 224-11 chr13 87249704 87249979 + 1.33333 NA Intergenic Intergenic 337921 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 289.333-3 chr1 190747012 190747273 + 1.33333 NA intron (NR_033922, intron 2 of 4) LTR86A2|LTR|ERVL 122252 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 240.333-10 chr19 19532171 19532354 + 1.33333 NA intron (NM_198537, intron 2 of 6) intron (NM_198537, intron 2 of 6) 3351 NM_001190328 374887 Hs.729508 NM_198537 ENSG00000250067 YJEFN3 - YjeF N-terminal domain containing 3 protein-coding 184-4 chr1 196199683 196199857 + 1.33333 NA Intergenic HAL1b|LINE|L1 -111055 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 271.999-3 chr15 95867082 95867330 + 1.33333 NA Intergenic Intergenic 260635 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 382.834-3 chr5 95423880 95424297 + 1.33333 NA intron (NM_152548, intron 5 of 9) intron (NM_152548, intron 5 of 9) 32722 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 225.667-39 chr9 4797316 4797620 + 1.33333 NA intron (NM_001286699, intron 1 of 6) MER20|DNA|hAT-Charlie 4524 NM_005772 10171 Hs.194121 NM_005772 ENSG00000120158 RCL1 RNAC|RPCL1 RNA terminal phosphate cyclase like 1 protein-coding 343.833-2 chr10 60429628 60430258 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -40068 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 416.667-4 chr11 7744673 7745290 + 1.33333 NA Intergenic Intergenic -38504 NM_001367963 341277 Hs.532475 NM_198185 ENSG00000183378 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 198.666-6 chr8 75228177 75228382 + 1.33333 NA intron (NR_103849, intron 1 of 1) L2a|LINE|L2 50202 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 207.166-5 chr4 119633198 119633483 + 1.33333 NA Intergenic L1MC4|LINE|L1 -4536 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 303.833 chr1 163989157 163989465 + 1.33333 NA Intergenic Intergenic -566120 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 376.666 chr12 12891231 12891667 + 1.33333 NA 5' UTR (NM_003979, exon 1 of 4) 5' UTR (NM_003979, exon 1 of 4) 427 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 218-35 chr5 157603407 157603597 + 1.33333 NA Intergenic Intergenic -27727 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 175.5-36 chr3 68151458 68151995 + 1.33333 NA intron (NM_001252216, intron 2 of 4) MSTD|LTR|ERVL-MaLR 147479 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 165.833-6 chr10 37894287 37894486 + 1.33333 NA Intergenic Intergenic -36283 NR_147992 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 192-33 chr5 119526558 119526849 + 1.33333 NA intron (NM_001199291, intron 20 of 24) HAL1ME|LINE|L1 74206 NM_001199292 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 182.5-9 chr11 92023511 92023680 + 1.33333 NA Intergenic Intergenic -201439 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 292.333-14 chr22 29290543 29290765 + 1.33333 NA TTS (NM_001163287) TTS (NM_001163287) -16369 NM_152236 10634 Hs.322852 NM_006478 ENSG00000185340 GAS2L1 GAR22 growth arrest specific 2 like 1 protein-coding 350-18 chr6 155372690 155373231 + 1.33333 NA Intergenic Intergenic -58476 NR_146725 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 390.5 chr11 104163238 104163801 + 1.33333 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 628 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 208.333-4 chr1 114427571 114427762 + 1.33333 NA intron (NM_015906, intron 7 of 19) L1ME2|LINE|L1 83537 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 523.166-2 chr21 8992942 8993726 + 1.33333 NA Intergenic L1MB8|LINE|L1 5717 NR_162105 113218501 NR_162105 MIR10396A - microRNA 10396a ncRNA 247.833-5 chr11 117852859 117853242 + 1.33333 NA intron (NM_001164832, intron 1 of 8) L1ME3F|LINE|L1 23608 NM_001164836 53826 Hs.744850 NM_022003 ENSG00000137726 FXYD6 - FXYD domain containing ion transport regulator 6 protein-coding 249.333-4 chr12 26035981 26036256 + 1.33333 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -16446 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 250.666-4 chr18 62088213 62088507 + 1.33333 NA intron (NM_176787, intron 25 of 30) intron (NM_176787, intron 25 of 30) 98696 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 261.5-16 chr15 80993446 80993974 + 1.33333 NA Intergenic L1M5|LINE|L1 3763 NR_039739 100616181 NR_039739 ENSG00000265855 MIR4514 - microRNA 4514 ncRNA 354-18 chr9 86127214 86127830 + 1.33333 NA promoter-TSS (NR_110996) promoter-TSS (NR_110996) -18 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 307.999-3 chr12 49514682 49515042 + 1.33333 NA intron (NM_001293285, intron 11 of 14) intron (NM_001293285, intron 11 of 14) -24168 NM_001314030 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 222.666-2 chr10 81385750 81385958 + 1.33333 NA Intergenic L1M1|LINE|L1 -489340 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 304.499 chr10 69961190 69961498 + 1.33333 NA Intergenic Intergenic -91502 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 176.666-4 chr2 125745458 125745646 + 1.33333 NA Intergenic Intergenic 372433 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 251.833-4 chr13 62371253 62371477 + 1.33333 NA Intergenic Intergenic 47708 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 241.333-17 chr2 60985171 60985445 + 1.33333 NA intron (NM_144709, intron 4 of 17) intron (NM_144709, intron 4 of 17) 31904 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 181.834-9 chr3 60318277 60318572 + 1.33333 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -237515 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 291.333-9 chr17 61563187 61563539 + 1.33333 NA Intergenic L1MC2|LINE|L1 27856 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 329.833 chr12 75526361 75527207 + 1.33333 NA Intergenic MLT1F|LTR|ERVL-MaLR -15175 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 187-26 chr3 18991398 18991555 + 1.33333 NA Intergenic L2c|LINE|L2 -157034 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 237-6 chr10 86989394 86989621 + 1.33333 NA intron (NM_133447, intron 3 of 11) L1MA3|LINE|L1 19171 NM_133447 119385 Hs.511787 NM_133447 AGAP11 - ArfGAP with GTPase domain, ankyrin repeat and PH domain 11 protein-coding 396-9 chr8 111554342 111554973 + 1.33333 NA Intergenic Intergenic 178018 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 228.167-21 chr3 90473474 90473802 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 1366017 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 164-10 chr11 41528453 41528628 + 1.33333 NA Intergenic Intergenic -68888 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 189.333-27 chr3 157148265 157148498 + 1.33333 NA exon (NM_020307, exon 11 of 11) exon (NM_020307, exon 11 of 11) 12379 NM_001308185 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 231.333-4 chr1 72802824 72803018 + 1.33333 NA Intergenic L1MA3|LINE|L1 -503249 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 216.333-17 chr15 92449640 92449985 + 1.33333 NA intron (NM_001330416, intron 4 of 4) L1PA16|LINE|L1 21734 NR_126501 104613533 Hs.97584 NR_126501 ENSG00000259170 LOC104613533 - uncharacterized LOC104613533 ncRNA 304.5-3 chr1 112704977 112705438 + 1.33333 NA intron (NM_175744, intron 1 of 5) intron (NM_175744, intron 1 of 5) 1849 NM_001042679 389 Hs.502659 NM_175744 ENSG00000155366 RHOC ARH9|ARHC|H9|RHOH9 ras homolog family member C protein-coding 310.833-12 chr7 137591040 137591457 + 1.33333 NA intron (NM_001321710, intron 12 of 32) intron (NM_001321710, intron 12 of 32) -247515 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 261.167-6 chr14 46490596 46490841 + 1.33333 NA intron (NR_102699, intron 2 of 2) intron (NR_102699, intron 2 of 2) 19359 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 165.5-10 chr12 15008175 15008628 + 1.33333 NA Intergenic MIR|SINE|MIR 6568 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 379.166 chr10 110233843 110234470 + 1.33333 NA intron (NM_001008541, intron 2 of 4) intron (NM_001008541, intron 2 of 4) 8160 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 191.166 chr1 66499941 66500129 + 1.33333 NA Intergenic L1ME3C|LINE|L1 -33558 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 226-25 chr20 4613956 4614249 + 1.33333 NA Intergenic Intergenic -72354 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 255.166-4 chr4 121994050 121994353 + 1.33333 NA Intergenic Intergenic -42141 NM_001366479 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 188.666-6 chr8 52761019 52761356 + 1.33333 NA Intergenic LTR57-int|LTR|ERVL -46721 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 284.999 chr8 38535263 38535577 + 1.33333 NA Intergenic L1MEf|LINE|L1 -6758 NM_001369353 389649 Hs.546586 NM_207412 ENSG00000196166 C8orf86 - chromosome 8 open reading frame 86 protein-coding 242-13 chr2 27362861 27363078 + 1.33333 NA Intergenic Intergenic -5935 NM_001521 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 166-50 chr3 9067425 9067574 + 1.33333 NA intron (NM_014850, intron 4 of 21) intron (NM_014850, intron 4 of 21) -104027 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 278-14 chr17 57403065 57403409 + 1.33333 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 120360 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 259.167-13 chr5 157222679 157222997 + 1.33333 NA intron (NM_005546, intron 5 of 16) intron (NM_005546, intron 5 of 16) 41942 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 276.333-4 chr2 42132366 42132646 + 1.33333 NA Intergenic Intergenic -36847 NM_019063 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 277.5-22 chr7 104141183 104141617 + 1.33333 NA intron (NM_002553, intron 12 of 13) intron (NM_002553, intron 12 of 13) 66613 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 234.833-6 chr12 23014151 23014336 + 1.33333 NA Intergenic Intergenic -161393 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 217.833-15 chr3 23476513 23476977 + 1.33333 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 273418 NM_001370228 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 393.833-5 chr7 54664575 54665022 + 1.33333 NA Intergenic Intergenic 94413 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 239.667-20 chr17 56466318 56466740 + 1.33333 NA exon (NM_001365758, exon 15 of 21) exon (NM_001365758, exon 15 of 21) -127170 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 230.166-5 chr2 207869564 207869790 + 1.33333 NA intron (NM_001080475, intron 6 of 7) intron (NM_001080475, intron 6 of 7) -99771 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 356.167-9 chr2 238288872 238289361 + 1.33333 NA promoter-TSS (NM_022817) promoter-TSS (NM_022817) -506 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian regulator 2 protein-coding 308.167 chr1 47160410 47160768 + 1.33333 NA Intergenic Intergenic -18661 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 316.5-6 chr12 7646647 7646967 + 1.33333 NA Intergenic Intergenic 19101 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 225.666 chr10 34582225 34582488 + 1.33333 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 232940 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 279.5-3 chr10 30967534 30967856 + 1.33333 NA intron (NR_026560, intron 1 of 6) intron (NR_026560, intron 1 of 6) 31822 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 515.333 chr11 76207031 76208041 + 1.33333 NA Intergenic CpG-4722 -1034 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 208.333-9 chr10 60546616 60546825 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 26236 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 385.999-2 chr19 41959340 41959732 + 1.33333 NA promoter-TSS (NM_006423) promoter-TSS (NM_006423) -215 NM_006423 10567 Hs.11417 NM_006423 ENSG00000105404 RABAC1 PRA1|PRAF1|YIP3 Rab acceptor 1 protein-coding 325.499-4 chr5 16137630 16138088 + 1.33333 NA intron (NM_001102562, intron 2 of 3) THE1B-int|LTR|ERVL-MaLR 41932 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 355.833-5 chr2 152466761 152467269 + 1.33333 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 131841 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 214-36 chr22 29723791 29723972 + 1.33333 NA intron (NM_182527, intron 1 of 4) intron (NM_182527, intron 1 of 4) 3878 NM_182527 164633 Hs.643608 NM_182527 ENSG00000100314 CABP7 CALN2 calcium binding protein 7 protein-coding 197.333-41 chr9 16857385 16857661 + 1.33333 NA intron (NM_001317940, intron 1 of 5) intron (NM_001317940, intron 1 of 5) 13147 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 458.5-2 chr17 57986015 57986513 + 1.33333 NA intron (NM_001330393, intron 1 of 6) intron (NM_001330393, intron 1 of 6) 1990 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 415.332 chr4 60861191 60861569 + 1.33333 NA Intergenic Intergenic -61239 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 275.5-24 chr4 156930223 156930683 + 1.33333 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 41346 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 197.333-7 chr12 54135183 54135428 + 1.33333 NA Intergenic Intergenic 9234 NR_026656 400043 Hs.19193 NR_026656 ENSG00000250742 LINC02381 - long intergenic non-protein coding RNA 2381 ncRNA 250-18 chr20 14505046 14505341 + 1.33333 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) -49191 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 210.333-19 chr2 28769653 28769959 + 1.33333 NA intron (NM_206876, intron 2 of 8) L1ME3|LINE|L1 17976 NM_002709 5500 Hs.702907 NM_002709 ENSG00000213639 PPP1CB HEL-S-80p|NSLH2|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1 catalytic subunit beta protein-coding 256.666-5 chr3 55750378 55750685 + 1.33333 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) -91062 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 265.833-4 chr11 84100237 84100578 + 1.33333 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 172873 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 282.666-8 chr8 53863425 53863699 + 1.33333 NA intron (NM_001286674, intron 1 of 2) intron (NM_001286674, intron 1 of 2) 11767 NM_001286675 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 282.667-28 chr8 126825205 126825553 + 1.33333 NA Intergenic Intergenic -187775 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 271.999-5 chr7 129055250 129055516 + 1.33333 NA promoter-TSS (NM_012470) promoter-TSS (NM_012470) 160 NR_002187 286016 Hs.369665 NR_002187 ENSG00000230359 TPI1P2 - triosephosphate isomerase 1 pseudogene 2 pseudo 378.667-8 chr3 103984113 103984645 + 1.33333 NA Intergenic Intergenic -460263 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 442.666 chr20 4555455 4555931 + 1.33333 NA Intergenic Intergenic -130763 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 301.666-14 chr7 86814800 86815144 + 1.33333 NA intron (NM_001363522, intron 3 of 4) intron (NM_001363522, intron 3 of 4) 150927 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 272.166-4 chr14 46241026 46241386 + 1.33333 NA intron (NR_102702, intron 3 of 3) L2b|LINE|L2 177047 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 169.5-17 chr18 70931265 70931708 + 1.33333 NA Intergenic Intergenic -280532 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 395.999-3 chr4 113562315 113562718 + 1.33333 NA intron (NM_001221, intron 4 of 18) intron (NM_001221, intron 4 of 18) 199222 NM_001321567 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 252.5-17 chr5 56839135 56839471 + 1.33333 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 23754 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 506.167-3 chr3 10224810 10225510 + 1.33333 NA intron (NM_001570, intron 9 of 12) intron (NM_001570, intron 9 of 12) -23299 NM_014760 9797 Hs.475401 NM_014760 ENSG00000157014 TATDN2 - TatD DNase domain containing 2 protein-coding 271.333-19 chr3 108958809 108959194 + 1.33333 NA exon (NM_014429, exon 28 of 28) exon (NM_014429, exon 28 of 28) -5122 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 295.666-9 chr19 43891066 43891496 + 1.33333 NA TTS (NR_038334) TTS (NR_038334) 10522 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 175-2 chr1 68564179 68564398 + 1.33333 NA Intergenic Intergenic -67206 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 203-13 chr17 40427109 40427331 + 1.33333 NA Intergenic Intergenic -9324 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A DNA topoisomerase II alpha protein-coding 240-51 chr5 163808346 163808680 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR 302894 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 270.999-2 chr21 43873701 43873978 + 1.33333 NA intron (NM_001369878, intron 1 of 8) L1MEd|LINE|L1 8616 NM_001369881 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 251-11 chr18 59990069 59990441 + 1.33333 NA Intergenic Intergenic 90259 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 302.833-8 chr20 56504472 56504956 + 1.33333 NA intron (NR_160308, intron 3 of 6) intron (NR_160308, intron 3 of 6) -20015 NM_001012971 200232 Hs.504907 NM_001012971 ENSG00000124103 FAM209A C20orf106|dJ1153D9.3 family with sequence similarity 209 member A protein-coding 178.667-24 chr21 14514581 14514734 + 1.33333 NA intron (NM_022136, intron 3 of 7) L2a|LINE|L2 31658 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 247.5-6 chr12 55298971 55299433 + 1.33333 NA Intergenic Intergenic -3970 NM_001005493 283365 Hs.554555 NM_001005493 ENSG00000188324 OR6C6 - olfactory receptor family 6 subfamily C member 6 protein-coding 212.666-7 chr7 108361874 108362407 + 1.33333 NA intron (NM_001371131, intron 2 of 33) MLT1A0|LTR|ERVL-MaLR -33614 NM_001371177 202.666-9 chr5 18777181 18777351 + 1.33333 NA Intergenic Intergenic 969992 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 355-4 chr2 2049832 2050366 + 1.33333 NA intron (NM_015025, intron 4 of 24) MIR|SINE|MIR -269133 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 334.333-8 chr2 123636098 123636541 + 1.33333 NA Intergenic Intergenic 388855 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 436.167-6 chr5 155512795 155513391 + 1.33333 NA Intergenic MLT1O|LTR|ERVL-MaLR 499338 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 182.5-11 chr12 32341843 32342052 + 1.33333 NA intron (NR_148725, intron 8 of 9) intron (NR_148725, intron 8 of 9) -57611 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 486 chr8 4535074 4535695 + 1.33333 NA intron (NM_033225, intron 2 of 69) L1MC5|LINE|L1 459530 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 164.667-27 chr2 148028375 148028556 + 1.33333 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -6861 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 308.667-3 chr1 235224448 235224943 + 1.33333 NA intron (NR_135074, intron 12 of 24) intron (NR_135074, intron 12 of 24) -34579 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 305.999-4 chr3 140999787 141000188 + 1.33333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -51360 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 182.833-18 chr2 47878100 47878242 + 1.33333 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 10548 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 327.333-8 chr17 39364735 39365201 + 1.33333 NA intron (NM_001370209, intron 1 of 13) intron (NM_001370209, intron 1 of 13) 36658 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 203-15 chr18 68949346 68949509 + 1.33333 NA intron (NM_001093729, intron 8 of 9) L2a|LINE|L2 151347 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 341.333-4 chr11 35629420 35629839 + 1.33333 NA Intergenic Intergenic 11169 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 439.501 chr1 177389283 177390186 + 1.33333 NA Intergenic L1MB5|LINE|L1 38148 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 217.166-2 chr16 60903065 60903311 + 1.33333 NA Intergenic Intergenic 152578 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 271.5-3 chr1 39204252 39204752 + 1.33333 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 120335 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 256.333-4 chr1 245758037 245758336 + 1.33333 NA intron (NM_022743, intron 11 of 11) L1MDa|LINE|L1 -523669 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 352.5-10 chr2 84629972 84630360 + 1.33333 NA intron (NM_001370, intron 29 of 76) L1MC5a|LINE|L1 113711 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 387.833-3 chr3 36375720 36376258 + 1.33333 NA Intergenic Intergenic -4498 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 309.333-4 chr10 58009801 58010212 + 1.33333 NA Intergenic Intergenic 257888 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 242.666-2 chr1 147363643 147363928 + 1.33333 NA Intergenic Intergenic 120643 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 269-18 chr20 50858020 50858385 + 1.33333 NA intron (NM_198799, intron 4 of 4) MER2|DNA|TcMar-Tigger 51589 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 414.166-4 chr17 48089826 48090284 + 1.33333 NA intron (NM_001127228, intron 1 of 4) AluSg|SINE|Alu 11131 NM_006807 10951 Hs.77254 NM_006807 ENSG00000108468 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox 1 protein-coding 192.5-52 chr8 131205311 131205470 + 1.33333 NA Intergenic Intergenic -164481 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 522.666-3 chr6 26064473 26065005 + 1.33333 NA Intergenic Intergenic -8268 NM_005319 3006 Hs.7644 NM_005319 ENSG00000187837 HIST1H1C H1.2|H1C|H1F2|H1s-1 histone cluster 1 H1 family member c protein-coding 268.833-21 chr8 105401548 105401763 + 1.33333 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 82112 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 319.999 chr16 6224283 6224571 + 1.33333 NA intron (NM_018723, intron 1 of 15) L1PA3|LINE|L1 204724 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 222.167-12 chr14 40983700 40983882 + 1.33333 NA intron (NR_109758, intron 3 of 3) L1MA2|LINE|L1 29080 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 219.333-3 chr1 31350001 31350316 + 1.33333 NA intron (NM_001282571, intron 6 of 6) intron (NM_001282571, intron 6 of 6) 22918 NM_004102 2170 Hs.576372 NM_004102 ENSG00000121769 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3 protein-coding 441-4 chr7 157398077 157398583 + 1.33333 NA intron (NM_058246, intron 8 of 9) intron (NM_058246, intron 8 of 9) 61326 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 262.333-23 chr8 82368754 82369002 + 1.33333 NA Intergenic SATR2|Satellite|Satellite -526592 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 347.999-2 chr4 85222444 85222809 + 1.33333 NA Intergenic L1MA2|LINE|L1 -252524 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 348.666-2 chr10 32979741 32980132 + 1.33333 NA Intergenic AluSz|SINE|Alu -21706 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 333.5-3 chr11 88783972 88784430 + 1.33333 NA intron (NM_001143831, intron 2 of 8) MamSINE1|SINE|tRNA-RTE 263871 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 200.666-9 chr5 104411452 104411725 + 1.33333 NA Intergenic L1MEf|LINE|L1 -687886 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 206-4 chr1 216226383 216226785 + 1.33333 NA intron (NM_206933, intron 14 of 71) LTR78|LTR|ERV1 154119 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 168.833-18 chr5 74828794 74828976 + 1.33333 NA intron (NR_046462, intron 4 of 11) HAL1|LINE|L1 -37008 NR_134288 441086 Hs.653007 NR_134288 LOC441086 - uncharacterized LOC441086 ncRNA 233.333-20 chr20 32354996 32355344 + 1.33333 NA Intergenic MIRb|SINE|MIR -3174 NM_015338 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 266.999 chr1 23870995 23871392 + 1.33333 NA 3' UTR (NM_001841, exon 2 of 2) 3' UTR (NM_001841, exon 2 of 2) -2824 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 210.667-47 chr7 33756984 33757296 + 1.33333 NA Intergenic MIRb|SINE|MIR -147775 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 220.666-4 chr12 92144463 92144708 + 1.33333 NA intron (NM_001731, intron 1 of 1) intron (NM_001731, intron 1 of 1) 1261 NM_001731 694 Hs.255935 NM_001731 ENSG00000133639 BTG1 APRO2 BTG anti-proliferation factor 1 protein-coding 209.333-5 chr1 68412551 68412807 + 1.33333 NA Intergenic Intergenic 37275 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 345.333-4 chr17 61689721 61689992 + 1.33333 NA intron (NM_032043, intron 18 of 19) AluJb|SINE|Alu -98637 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 215-21 chr2 207138535 207138714 + 1.33333 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) -4487 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 192-30 chr5 2656243 2656460 + 1.33333 NA Intergenic Intergenic -56240 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 290.166-2 chr14 67694865 67695141 + 1.33333 NA intron (NM_016026, intron 1 of 6) intron (NM_016026, intron 1 of 6) 761 NM_001252650 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 protein-coding 182-45 chr7 13825662 13825925 + 1.33333 NA Intergenic Intergenic 160721 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 183.5-8 chr12 54702014 54702437 + 1.33333 NA Intergenic Intergenic -53860 NM_001300854 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 267.167-15 chr8 139230570 139230857 + 1.33333 NA Intergenic HERV16-int|LTR|ERVL -316672 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 353.666-2 chr17 19766618 19766958 + 1.33333 NA Intergenic Intergenic -18490 NM_001330150 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 233.166-4 chr17 2848699 2849003 + 1.33333 NA intron (NM_001330058, intron 2 of 24) intron (NM_001330058, intron 2 of 24) 52413 NM_015085 23108 Hs.499659 NM_015085 ENSG00000132359 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 253-7 chr12 22046997 22047387 + 1.33333 NA intron (NR_135117, intron 1 of 6) intron (NR_135117, intron 1 of 6) 974 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 308.001-2 chr1 233425009 233425409 + 1.33333 NA Intergenic L1MB3|LINE|L1 97485 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 327.833-14 chrX 48958109 48958612 + 1.33333 NA promoter-TSS (NM_001136158) promoter-TSS (NM_001136158) 21 NM_001136159 55593 Hs.496098 NM_017602 ENSG00000068308 OTUD5 DUBA OTU deubiquitinase 5 protein-coding 182.833-20 chr2 74471915 74472078 + 1.33333 NA TTS (NM_032779) TTS (NM_032779) 684 NM_053050 116540 Hs.534527 NM_053050 ENSG00000204822 MRPL53 L53MT mitochondrial ribosomal protein L53 protein-coding 356.333-9 chr3 93981305 93981664 + 1.33333 NA intron (NM_144996, intron 1 of 7) intron (NM_144996, intron 1 of 7) 1329 NM_001321328 200894 Hs.533086 NM_144996 ENSG00000169379 ARL13B ARL2L1|JBTS8 ADP ribosylation factor like GTPase 13B protein-coding 270.5-19 chr19 18193051 18193307 + 1.33333 NA promoter-TSS (NM_032683) promoter-TSS (NM_032683) -39 NM_032683 84769 Hs.515254 NM_032683 ENSG00000254858 MPV17L2 FKSG24 MPV17 mitochondrial inner membrane protein like 2 protein-coding 246-29 chr6 34055184 34055491 + 1.33333 NA intron (NM_001256809, intron 4 of 8) intron (NM_001256809, intron 4 of 8) 50630 NM_001256813 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 337.666-6 chr2 190824879 190825204 + 1.33333 NA Intergenic L1M4b|LINE|L1 -55780 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 360.666-2 chr22 35981145 35981579 + 1.33333 NA intron (NM_001082578, intron 1 of 13) AluSz6|SINE|Alu -19732 NM_001349990 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 220.666-6 chr2 38110094 38110346 + 1.33333 NA Intergenic Intergenic -20885 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 214.166-5 chr3 167021861 167022048 + 1.33333 NA Intergenic L1MEg|LINE|L1 123271 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 197.333-15 chr2 80256538 80256723 + 1.33333 NA intron (NM_001282598, intron 7 of 17) L3|LINE|CR1 48122 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 384.499 chr17 80981085 80981913 + 1.33333 NA Intergenic (GCTGCC)n|Simple_repeat|Simple_repeat -10286 NR_148968 400627 Hs.591201 NR_148968 ENSG00000261924 LOC400627 - uncharacterized LOC400627 ncRNA 228.5-33 chr8 63501719 63501950 + 1.33333 NA Intergenic L1M4|LINE|L1 35985 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 181.667-25 chr2 121505267 121505526 + 1.33333 NA intron (NM_015282, intron 7 of 38) intron (NM_015282, intron 7 of 38) -25484 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 238.333-5 chr10 52817620 52818092 + 1.33333 NA Intergenic Intergenic -46156 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 172-18 chr16 82700812 82701029 + 1.33333 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 11989 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 368-7 chr5 53487072 53487369 + 1.33333 NA TTS (NM_006350) TTS (NM_006350) 6591 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 274.999-5 chr4 100726700 100726912 + 1.33333 NA Intergenic L1MEf|LINE|L1 -51693 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 341.666-2 chr15 64093887 64094337 + 1.33333 NA promoter-TSS (NR_110310) promoter-TSS (NR_110310) -104 NM_001289108 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 253.833-5 chr2 146364214 146364446 + 1.33333 NA Intergenic MIR|SINE|MIR -222727 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 267.833-7 chr20 21721184 21721420 + 1.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 15638 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 541.833-2 chr18 80154494 80155072 + 1.33333 NA intron (NR_028340, intron 1 of 2) intron (NR_028340, intron 1 of 2) 6859 NR_028339 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 263 chr1 113518483 113518849 + 1.33333 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 128151 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 238-34 chr7 126367160 126367492 + 1.33333 NA Intergenic Intergenic 690858 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 170.166-5 chr4 35612166 35612378 + 1.33333 NA Intergenic Intergenic 631667 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 187.5-36 chr7 65929889 65930157 + 1.33333 NA intron (NM_001284342, intron 1 of 1) L1M5|LINE|L1 52190 NM_000181 2990 Hs.255230 NM_000181 ENSG00000169919 GUSB BG|MPS7 glucuronidase beta protein-coding 239.333-7 chr14 71439533 71439927 + 1.33333 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 791 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 265.666-2 chr1 236440280 236440520 + 1.33333 NA intron (NM_080738, intron 4 of 5) L1MC1|LINE|L1 44987 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 238.499 chr11 81931086 81931312 + 1.33333 NA intron (NR_120571, intron 6 of 7) MIR|SINE|MIR -40363 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 250.499-3 chr8 117077152 117077339 + 1.33333 NA intron (NM_001172815, intron 2 of 10) MER5B|DNA|hAT-Charlie -57750 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 213.5-19 chr3 31610691 31610941 + 1.33333 NA intron (NM_178862, intron 5 of 15) intron (NM_178862, intron 5 of 15) 77891 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 275.666-5 chr7 27598031 27598463 + 1.33333 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -17727 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 410.667-2 chr11 129440163 129440599 + 1.33333 NA intron (NM_003658, intron 2 of 3) intron (NM_003658, intron 2 of 3) 64533 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 375.999 chr1 64285659 64285973 + 1.33333 NA Intergenic L1MA8|LINE|L1 82193 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 360.666-6 chr7 31129916 31130315 + 1.33333 NA Intergenic L1MB8|LINE|L1 77654 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 323.666-11 chr6 118884019 118884316 + 1.33333 NA intron (NM_017696, intron 6 of 11) L1MB8|LINE|L1 -9985 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 238.666-11 chr8 82295438 82295802 + 1.33333 NA Intergenic Intergenic -453334 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 256.333-9 chr14 83228335 83228603 + 1.33333 NA Intergenic MIR3|SINE|MIR 585837 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 424.666-4 chr22 20079609 20080065 + 1.33333 NA promoter-TSS (NM_001190326) promoter-TSS (NM_001190326) -395 NM_001190326 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 279-14 chr18 13958552 13958804 + 1.33333 NA Intergenic L1M4a1|LINE|L1 -42971 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 404.333-2 chr12 23162090 23162525 + 1.33333 NA Intergenic L1MB7|LINE|L1 -13329 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 328.666-3 chr6 47981553 47981961 + 1.33333 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 86932 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 268.999-2 chr5 42912353 42912598 + 1.33333 NA Intergenic L1M5|LINE|L1 80858 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 211-38 chr4 162500085 162500327 + 1.33333 NA Intergenic Intergenic -336172 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 313.999 chr22 17785200 17785436 + 1.33333 NA Intergenic CpG 8028 NR_103718 200298 Hs.517397 NR_103718 ENSG00000269220 LINC00528 C22orf37 long intergenic non-protein coding RNA 528 ncRNA 303.333-5 chr17 20010340 20010592 + 1.33333 NA intron (NM_001243439, intron 1 of 14) intron (NM_001243439, intron 1 of 14) 1107 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 223.833-5 chr12 98156267 98156598 + 1.33333 NA Intergenic Intergenic -160984 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 307-5 chr15 53090997 53091403 + 1.33333 NA Intergenic L1M4|LINE|L1 -25165 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 354.166-2 chr4 63483751 63484189 + 1.33333 NA Intergenic Intergenic 925480 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 164-6 chr10 70653405 70653581 + 1.33333 NA Intergenic Intergenic -19013 NM_080722 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 277.333-6 chr10 106795583 106795858 + 1.33333 NA intron (NM_001206569, intron 3 of 25) intron (NM_001206569, intron 3 of 25) 368986 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 179.333-45 chr6 142388385 142388643 + 1.33333 NA intron (NM_198569, intron 6 of 24) MER47A|DNA|TcMar-Tigger 86507 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 198.666-3 chr2 200380542 200380843 + 1.33333 NA intron (NM_001282743, intron 2 of 11) intron (NM_001282743, intron 2 of 11) 71742 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 369-12 chr7 17640883 17641320 + 1.33333 NA Intergenic Intergenic -82192 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 213-21 chr2 29834988 29835272 + 1.33333 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 86456 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 392.833-6 chr8 58184489 58184945 + 1.33333 NA Intergenic MER63C|DNA|hAT-Blackjack 87384 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 266.999-3 chr11 21472481 21472727 + 1.33333 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -720481 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 171.167-11 chr13 94642898 94643134 + 1.33333 NA Intergenic L1M5|LINE|L1 41159 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 187.333-39 chr7 16818845 16819091 + 1.33333 NA Intergenic MER57D|LTR|ERV1 -13969 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 165.666-5 chr4 117643716 117643858 + 1.33333 NA intron (NR_125757, intron 2 of 3) L1MA3|LINE|L1 -190614 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 304.834-4 chr9 125154600 125155032 + 1.33333 NA intron (NM_002721, intron 4 of 6) intron (NM_002721, intron 4 of 6) -11288 NM_001144877 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 324.333-9 chr6 119390679 119391030 + 1.33333 NA Intergenic Intergenic -41093 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 314.333-15 chr8 78516043 78516316 + 1.33333 NA promoter-TSS (NM_006823) promoter-TSS (NM_006823) -161 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 261.666-4 chr11 40202317 40202548 + 1.33333 NA intron (NM_020929, intron 3 of 4) MIR3|SINE|MIR 90698 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 204.666 chr12 49998886 49999136 + 1.33333 NA intron (NM_001320006, intron 10 of 17) intron (NM_001320006, intron 10 of 17) 26064 NM_001652 363 Hs.54505 NM_001652 ENSG00000086159 AQP6 AQP2L|KID aquaporin 6 protein-coding 327.501 chr22 28557013 28557403 + 1.33333 NA intron (NM_001145418, intron 2 of 22) L1MEd|LINE|L1 97339 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 203-16 chr19 44039059 44039334 + 1.33333 NA Intergenic L1M4|LINE|L1 -12840 NM_013361 7766 Hs.720813 NM_013361 ENSG00000178386 ZNF223 - zinc finger protein 223 protein-coding 187.833-19 chr4 90342540 90342743 + 1.33333 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 107610 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 398.334-4 chr4 139229416 139229848 + 1.33333 NA Intergenic Intergenic 50593 NM_032623 84709 Hs.710036 NM_032623 ENSG00000137463 MGARP C4orf49|CESP-1|HUMMR|OSAP mitochondria localized glutamic acid rich protein protein-coding 352.666-3 chr12 20021481 20021822 + 1.33333 NA intron (NR_040098, intron 2 of 2) MLT1B|LTR|ERVL-MaLR 6966 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 697.667-2 chr12 130280713 130281594 + 1.33333 NA Intergenic Intergenic -56734 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 255.999-3 chr6 79466464 79466664 + 1.33333 NA Intergenic Intergenic 70866 NM_001122769 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 lebercilin LCA5 protein-coding 417.833-2 chr11 47558579 47559016 + 1.33333 NA Intergenic L1MCa|LINE|L1 -5665 NM_006560 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 168.666 chr1 19010995 19011261 + 1.33333 NA Intergenic Intergenic -54452 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 271.333-9 chr14 57234003 57234234 + 1.33333 NA intron (NM_006544, intron 7 of 17) intron (NM_006544, intron 7 of 17) 34787 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 214.666-6 chr5 93353233 93353487 + 1.33333 NA Intergenic L2b|LINE|L2 217983 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 224.666-10 chrX 129886028 129886206 + 1.33333 NA Intergenic MLT1E1|LTR|ERVL-MaLR -20004 NM_001166221 10813 Hs.458598 NM_006649 ENSG00000156697 UTP14A NYCO16|SDCCAG16|Utp14|dJ537K23.3 UTP14A small subunit processome component protein-coding 333.333-5 chr15 68023034 68023478 + 1.33333 NA Intergenic LTR8B|LTR|ERV1 -30923 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 252.667-7 chr10 36160438 36160823 + 1.33333 NA Intergenic Intergenic 382328 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 273-10 chr16 46802009 46802311 + 1.33333 NA non-coding (NR_145835, exon 5 of 5) non-coding (NR_145835, exon 5 of 5) 28888 NR_145835 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 284.667-20 chr9 38097470 38097865 + 1.33333 NA Intergenic L1MC|LINE|L1 -28440 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 431.166-2 chr4 112074722 112075559 + 1.33333 NA Intergenic MamGypLTR3a|LTR|Gypsy -70314 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 249.666 chr10 34124706 34124999 + 1.33333 NA intron (NM_001184789, intron 21 of 22) intron (NM_001184789, intron 21 of 22) -352172 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 164.666-3 chr2 51200857 51201092 + 1.33333 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 168373 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 204.667-35 chr7 22583326 22583615 + 1.33333 NA Intergenic MLT1G3|LTR|ERVL-MaLR 20133 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 409.166-2 chr2 49616747 49617302 + 1.33333 NA Intergenic Intergenic 357179 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 254.666-10 chr7 79496110 79496401 + 1.33333 NA Intergenic L1MA8|LINE|L1 42295 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 437-5 chr3 47323872 47324667 + 1.33333 NA intron (NM_025010, intron 3 of 9) L2c|LINE|L2 41325 NM_025010 23276 Hs.517946 NM_025010 ENSG00000114648 KLHL18 - kelch like family member 18 protein-coding 207.166-6 chr9 89895521 89895741 + 1.33333 NA Intergenic L1MD2|LINE|L1 -73785 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 274.666-4 chr2 70099505 70099876 + 1.33333 NA Intergenic AluSx3|SINE|Alu 12213 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding 205.333-29 chr22 37330576 37330733 + 1.33333 NA Intergenic Intergenic 24185 NR_110515 100506271 Hs.220558 NR_110515 ENSG00000237862 LOC100506271 - uncharacterized LOC100506271 ncRNA 416-8 chr5 31223290 31223796 + 1.33333 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 29857 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 163.167-41 chr8 99598646 99598980 + 1.33333 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -61952 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 193.333-32 chr2 116438870 116439275 + 1.33333 NA Intergenic Intergenic 1095257 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 439.332 chr15 86594234 86594853 + 1.33333 NA intron (NM_152336, intron 22 of 24) L1M5|LINE|L1 -277575 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 325.666-2 chr17 44543735 44544035 + 1.33333 NA Intergenic Intergenic -13599 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 283.166 chr2 222038552 222038792 + 1.33333 NA Intergenic Intergenic -259475 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 511.999-2 chr15 53636462 53636882 + 1.33333 NA intron (NM_182758, intron 14 of 19) MIRb|SINE|MIR -95569 NM_001277176 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 251-13 chr19 48732942 48733238 + 1.33333 NA intron (NM_017805, intron 4 of 11) AluJb|SINE|Alu 7520 NM_017805 54922 Hs.233955 NM_017805 ENSG00000105538 RASIP1 RAIN Ras interacting protein 1 protein-coding 217.333-16 chr2 26392478 26392669 + 1.33333 NA non-coding (NR_137633, exon 10 of 10) non-coding (NR_137633, exon 10 of 10) -9347 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 299.5-10 chr17 75130522 75131186 + 1.33333 NA TTS (NM_001304271) TTS (NM_001304271) 888 NR_045513 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 256.333-24 chr8 61629287 61629705 + 1.33333 NA intron (NM_032468, intron 14 of 14) intron (NM_032468, intron 14 of 14) 60315 NM_032468 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 258.167-16 chr6 140921738 140922092 + 1.33333 NA Intergenic Intergenic 238101 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 216.333-41 chr7 33987394 33987598 + 1.33333 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 81957 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 248.666-6 chr4 41934900 41935184 + 1.33333 NA promoter-TSS (NM_018126) promoter-TSS (NM_018126) -387 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 217-6 chr14 77457608 77457883 + 1.33333 NA promoter-TSS (NM_022067) promoter-TSS (NM_022067) -105 NM_001193315 63894 Hs.16157 NM_022067 ENSG00000151445 VIPAS39 C14orf133|SPE-39|SPE39|VIPAR|VPS16B|hSPE-39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein-coding 214.666-7 chr6 37244752 37245023 + 1.33333 NA intron (NM_145316, intron 1 of 3) MLT1H|LTR|ERVL-MaLR 12712 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 352.999 chr14 50714663 50715062 + 1.33333 NA Intergenic AluJr|SINE|Alu -46556 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 245.333-8 chr13 88923915 88924134 + 1.33333 NA Intergenic HAL1|LINE|L1 297171 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 175.333-30 chr2 106827711 106827942 + 1.33333 NA intron (NM_001142352, intron 5 of 5) intron (NM_001142352, intron 5 of 5) 58202 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 322.5-9 chr17 44345515 44345971 + 1.33333 NA intron (NM_002087, intron 1 of 12) intron (NM_002087, intron 1 of 12) 657 NM_002087 2896 Hs.514220 NM_002087 ENSG00000030582 GRN CLN11|GEP|GP88|PCDGF|PEPI|PGRN granulin precursor protein-coding 188.166-4 chr8 89795979 89796188 + 1.33333 NA Intergenic HAL1ME|LINE|L1 38267 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 572.999 chr4 116358361 116359307 + 1.33333 NA Intergenic HERVL18-int|LTR|ERVL 59109 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 316.833-4 chr3 41286822 41287226 + 1.33333 NA intron (NR_136342, intron 33 of 34) intron (NR_136342, intron 33 of 34) 87519 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 177.334-3 chr14 20047316 20047665 + 1.33333 NA Intergenic L1M4b|LINE|L1 -12555 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 237.333-4 chr10 68312152 68312497 + 1.33333 NA intron (NM_001033083, intron 1 of 8) L1MA8|LINE|L1 -19369 NM_001322445 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 366-12 chr6 46889535 46890085 + 1.33333 NA intron (NM_001098518, intron 3 of 20) intron (NM_001098518, intron 3 of 20) -13661 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 474.999 chr6 120828455 120828871 + 1.33333 NA Intergenic Intergenic 505817 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 218.833-21 chr6 112330164 112330430 + 1.33333 NA Intergenic Intergenic -17033 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 271.166-5 chr3 194653664 194653941 + 1.33333 NA intron (NM_018385, intron 7 of 13) AluJr|SINE|Alu 18389 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 233.667-19 chr18 76670839 76671225 + 1.33333 NA Intergenic Intergenic -18997 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 194.666-6 chr16 79088566 79088925 + 1.33333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 511992 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 228.5-28 chr6 45445960 45446320 + 1.33333 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 23865 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 180.5-15 chr12 124515034 124515227 + 1.33333 NA intron (NM_001077261, intron 2 of 47) intron (NM_001077261, intron 2 of 47) 52482 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 254.167-4 chr10 93475860 93476136 + 1.33333 NA intron (NM_013451, intron 1 of 53) intron (NM_013451, intron 1 of 53) 6336 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 492.833 chr19 7102213 7102792 + 1.33333 NA Intergenic Intergenic 32799 NM_001044387 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 216.666-9 chr9 31088790 31089035 + 1.33333 NA Intergenic Intergenic 292578 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 171.333-59 chrX 58046371 58046568 + 1.33333 NA Intergenic Intergenic -135836 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 376.667-7 chr4 71565755 71566265 + 1.33333 NA intron (NM_003759, intron 21 of 22) MLT1F|LTR|ERVL-MaLR 218069 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 303.666-2 chr11 15327643 15327909 + 1.33333 NA Intergenic L3b|LINE|CR1 178674 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 275.666 chr1 186028803 186029163 + 1.33333 NA intron (NM_031935, intron 36 of 106) AluSx1|SINE|Alu -267290 NM_005807 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 208.5-19 chr2 45539913 45540173 + 1.33333 NA intron (NM_018079, intron 14 of 20) L1ME1|LINE|L1 71224 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 168.333-18 chr14 27585423 27585583 + 1.33333 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -27085 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 261.5-22 chr2 84907379 84907732 + 1.33333 NA TTS (NM_021103) TTS (NM_021103) 1899 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 296.666-8 chr20 54041385 54041639 + 1.33333 NA intron (NM_001366297, intron 3 of 8) L1ME4b|LINE|L1 17508 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 188.833-4 chr10 96066955 96067096 + 1.33333 NA intron (NR_134322, intron 2 of 3) L1MC4|LINE|L1 -2626 NR_036113 100422892 NR_036113 ENSG00000266407 MIR3157 mir-3157 microRNA 3157 ncRNA 229-20 chr3 185097349 185097576 + 1.33333 NA intron (NM_001025266, intron 1 of 1) intron (NM_001025266, intron 1 of 1) 55598 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 252.333-14 chr6 64041600 64041909 + 1.33333 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 234918 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 193.333-33 chr2 120754506 120754743 + 1.33333 NA intron (NM_001371271, intron 1 of 13) L1ME1|LINE|L1 18756 NM_001371271 244.666-8 chr5 16690187 16690387 + 1.33333 NA intron (NM_012334, intron 27 of 40) MER2|DNA|TcMar-Tigger -73229 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 444.166 chr1 157166661 157167193 + 1.33333 NA Intergenic Intergenic -28336 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 325.999-4 chr5 26874666 26874956 + 1.33333 NA Intergenic HAL1|LINE|L1 163775 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 347.666 chr1 118961112 118961513 + 1.33333 NA intron (NM_152380, intron 1 of 7) L2c|LINE|L2 27031 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 277.333-24 chr3 16264687 16265144 + 1.33333 NA promoter-TSS (NR_148220) promoter-TSS (NR_148220) 28 NM_001047434 285381 Hs.388087 NM_206831 ENSG00000154813 DPH3 DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 diphthamide biosynthesis 3 protein-coding 256.166 chr11 105527794 105528056 + 1.33333 NA Intergenic L1PA15|LINE|L1 -82148 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 194.334-7 chr5 25410997 25411213 + 1.33333 NA Intergenic Intergenic 220152 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 470.833 chr10 72602268 72602766 + 1.33333 NA intron (NM_006077, intron 1 of 11) intron (NM_006077, intron 1 of 11) 23562 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 182.833-5 chr10 13545657 13545825 + 1.33333 NA Intergenic L2c|LINE|L2 -16727 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 384-4 chr15 89502502 89502945 + 1.33333 NA Intergenic L2a|LINE|L2 -6140 NR_110261 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 188.833-8 chr12 54527007 54527331 + 1.33333 NA intron (NM_001184976, intron 21 of 30) intron (NM_001184976, intron 21 of 30) -22224 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 244.333-12 chr17 66715661 66715919 + 1.33333 NA intron (NM_002737, intron 8 of 16) intron (NM_002737, intron 8 of 16) -71282 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 513.332 chr12 13297321 13297730 + 1.33333 NA Intergenic (TCATGTA)n|Simple_repeat|Simple_repeat 79220 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 237.333-20 chr2 157645250 157645536 + 1.33333 NA Intergenic Intergenic -16529 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 291.333-25 chr9 23180632 23180983 + 1.33333 NA Intergenic Intergenic 491592 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 315.5-8 chr3 163916733 163917243 + 1.33333 NA Intergenic HERVL-int|LTR|ERVL 254568 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 509-4 chr2 30666697 30667307 + 1.33333 NA Intergenic Intergenic 140444 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 243.833-23 chrX 27610995 27611271 + 1.33333 NA intron (NM_001353450, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL 20789 NR_148432 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 260.999-3 chr6 153287930 153288277 + 1.33333 NA Intergenic Intergenic -156821 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 273.167-8 chr2 29164594 29165057 + 1.33333 NA intron (NM_001287528, intron 13 of 14) intron (NM_001287528, intron 13 of 14) 49410 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 237.166-10 chrX 93321148 93321362 + 1.33333 NA Intergenic L1MA1|LINE|L1 352323 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 286.833-8 chr4 140373401 140373902 + 1.33333 NA promoter-TSS (NR_033939) promoter-TSS (NR_033939) 141 NM_001153484 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 231.333-31 chr6 56480781 56481071 + 1.33333 NA intron (NM_001144770, intron 82 of 94) intron (NM_001144770, intron 82 of 94) -86798 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 349.333-9 chr7 38765235 38765534 + 1.33333 NA intron (NM_014396, intron 16 of 28) intron (NM_014396, intron 16 of 28) -78295 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 303.666-4 chr4 72499864 72500304 + 1.33333 NA intron (NM_014243, intron 3 of 21) L1PA15-16|LINE|L1 69137 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 444.5-4 chr13 97257918 97258578 + 1.33333 NA intron (NM_144778, intron 1 of 8) intron (NM_144778, intron 1 of 8) 35915 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 296.666-13 chr9 127195209 127195571 + 1.33333 NA intron (NM_001322324, intron 12 of 17) intron (NM_001322324, intron 12 of 17) -68272 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 258.667-27 chr7 45890851 45891260 + 1.33333 NA intron (NM_000596, intron 2 of 3) intron (NM_000596, intron 2 of 3) 2567 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 245.666-12 chr8 121611358 121611589 + 1.33333 NA TTS (NM_005328) TTS (NM_005328) -27873 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 445.166-3 chr18 59073073 59073521 + 1.33333 NA Intergenic Intergenic 37618 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 209.666-5 chr6 107092621 107092831 + 1.33333 NA intron (NM_001080450, intron 4 of 4) L1MC1|LINE|L1 21706 NM_001080450 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 246.333-24 chr2 113142638 113143100 + 1.33333 NA Intergenic L1ME2|LINE|L1 15271 NM_173842 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 244.333-6 chr11 97968329 97968633 + 1.33333 NA Intergenic HUERS-P3-int|LTR|ERV1 -1052468 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 303.333-2 chr1 225504823 225505226 + 1.33333 NA exon (NM_001008493, exon 12 of 15) exon (NM_001008493, exon 12 of 15) -76169 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 191.5-41 chr5 83082945 83083180 + 1.33333 NA intron (NM_001318012, intron 1 of 7) L2a|LINE|L2 5515 NM_022406 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 328.666-2 chr21 28592901 28593214 + 1.33333 NA Intergenic AluSx|SINE|Alu 53739 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 238.666-9 chr6 128956414 128956625 + 1.33333 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 73378 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 174-31 chr20 40085409 40085612 + 1.33333 NA Intergenic Intergenic 81049 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 491.5 chr11 65274764 65275822 + 1.33333 NA intron (NM_002689, intron 4 of 17) intron (NM_002689, intron 4 of 17) 13331 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 264.167 chr1 71529630 71530110 + 1.33333 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 307142 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 280.833-17 chr8 105352762 105353047 + 1.33333 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 33361 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 358.667-13 chr9 34090796 34091270 + 1.33333 NA intron (NM_015397, intron 7 of 8) intron (NM_015397, intron 7 of 8) 35665 NM_015397 25853 Hs.493750 NM_015397 ENSG00000198876 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 298.5-16 chr3 73099846 73100348 + 1.33333 NA Intergenic Intergenic 38438 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 250-32 chr7 2287562 2287797 + 1.33333 NA intron (NM_013321, intron 1 of 10) AluSx1|SINE|Alu 26762 NM_013321 29886 Hs.584900 NM_013321 ENSG00000106266 SNX8 Mvp1 sorting nexin 8 protein-coding 296.166-4 chr22 35627364 35627623 + 1.33333 NA Intergenic Intergenic -4139 NM_203377 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 192.5-32 chr4 39891295 39891483 + 1.33333 NA intron (NM_001100399, intron 16 of 32) AluSp|SINE|Alu 86522 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 209 chr1 7903977 7904139 + 1.33333 NA Intergenic Intergenic 39107 NM_001561 3604 Hs.86447 NM_001561 ENSG00000049249 TNFRSF9 4-1BB|CD137|CDw137|ILA TNF receptor superfamily member 9 protein-coding 294.666-7 chr7 39953024 39953364 + 1.33333 NA intron (NM_003718, intron 1 of 13) intron (NM_003718, intron 1 of 13) 2834 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 175.5-13 chr12 115147615 115147853 + 1.33333 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -463559 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 311.666-10 chr7 37626028 37626424 + 1.33333 NA Intergenic Intergenic -57540 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 210.666-3 chr18 60503786 60504004 + 1.33333 NA Intergenic Intergenic -131120 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 348.5-10 chr12 58310614 58311271 + 1.33333 NA Intergenic Intergenic 223050 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 218.333-20 chr3 90122551 90122830 + 1.33333 NA Intergenic Intergenic 1015069 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 192.333-30 chr2 158464508 158464855 + 1.33333 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 7729 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 173.666-3 chr20 8899223 8899456 + 1.33333 NA Intergenic AluSx|SINE|Alu 68154 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 240.667-36 chrX 130700406 130700728 + 1.33333 NA intron (NM_006375, intron 4 of 14) intron (NM_006375, intron 4 of 14) -102069 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 234.167-14 chr19 39342028 39342289 + 1.33333 NA promoter-TSS (NM_001303614) promoter-TSS (NM_001303614) -301 NM_001303614 55095 Hs.612332 NM_018028 ENSG00000179134 SAMD4B SMGB|Smaug2 sterile alpha motif domain containing 4B protein-coding 167.167-15 chr12 47838740 47839006 + 1.33333 NA Intergenic Intergenic -18970 NM_001098416 51564 Hs.200063 NM_015401 ENSG00000061273 HDAC7 HD7|HD7A|HDAC7A histone deacetylase 7 protein-coding 230.833-19 chr8 127658905 127659079 + 1.33333 NA Intergenic Intergenic 74975 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 190-52 chr8 120122834 120123086 + 1.33333 NA Intergenic Intergenic -2142 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 416.667 chr1 87084118 87084810 + 1.33333 NA intron (NM_012262, intron 3 of 6) intron (NM_012262, intron 3 of 6) -45301 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 349.667-2 chr12 59424478 59425223 + 1.33333 NA Intergenic Intergenic -171179 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 210.667-30 chr20 12386135 12386415 + 1.33333 NA Intergenic Intergenic 468382 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 227.333-31 chr7 37902466 37902731 + 1.33333 NA Intergenic Intergenic 14219 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 324.666-8 chrX 99225238 99225624 + 1.33333 NA Intergenic L1PA15|LINE|L1 1184842 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 181.333-39 chr7 54357475 54357671 + 1.33333 NA Intergenic Intergenic 26876 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 182.666 chr1 104132827 104133019 + 1.33333 NA Intergenic Intergenic 59900 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 208-35 chr5 110249482 110249710 + 1.33333 NA Intergenic Intergenic 264319 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 185.666-2 chr17 29497454 29497704 + 1.33333 NA intron (NM_025142, intron 11 of 17) intron (NM_025142, intron 11 of 17) 69458 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding 296.666-3 chr14 57010392 57010844 + 1.33333 NA Intergenic Intergenic 197460 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 277.333-21 chr2 103884924 103885146 + 1.33333 NA Intergenic MER39|LTR|ERV1 523297 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 205.666-4 chr7 18187829 18187998 + 1.33333 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -60604 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 236.166-3 chr4 55866069 55866355 + 1.33333 NA intron (NM_001024924, intron 4 of 18) intron (NM_001024924, intron 4 of 18) 12562 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 204.666-2 chr12 125163226 125163441 + 1.33333 NA Intergenic MamGypLTR1d|LTR|Gypsy -23053 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 309.5-12 chr3 100269675 100270088 + 1.33333 NA intron (NM_001199198, intron 1 of 18) intron (NM_001199198, intron 1 of 18) 8889 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 408.667-4 chr4 71974847 71975545 + 1.33333 NA Intergenic Intergenic -56608 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 223.666-3 chr2 49017975 49018336 + 1.33333 NA intron (NM_000145, intron 3 of 9) intron (NM_000145, intron 3 of 9) -41448 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 217.333-21 chr2 211708907 211709141 + 1.33333 NA intron (NM_001042599, intron 9 of 26) intron (NM_001042599, intron 9 of 26) 717336 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 294.833-2 chr10 30582694 30583050 + 1.33333 NA Intergenic Intergenic 46881 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 208.333-6 chr1 157688715 157688930 + 1.33333 NA intron (NM_052939, intron 10 of 14) L1MEc|LINE|L1 11947 NR_135214 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 201-2 chr1 63148854 63149279 + 1.33333 NA Intergenic Intergenic -136595 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 483.666-2 chr2 136415437 136415998 + 1.33333 NA Intergenic Intergenic -297562 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 244-3 chr10 97070193 97070628 + 1.33333 NA intron (NM_003061, intron 4 of 36) MIR3|SINE|MIR -32346 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 203.833-24 chr8 126812117 126812339 + 1.33333 NA Intergenic MIRb|SINE|MIR -200926 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 223.333-34 chr4 108672961 108673264 + 1.33333 NA Intergenic L1MEf|LINE|L1 22513 NM_001267818 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 240.166 chr6 118631123 118631435 + 1.33333 NA intron (NM_001042475, intron 2 of 12) L1MD1|LINE|L1 20312 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 355.5-4 chr5 100819816 100820199 + 1.33333 NA intron (NM_005668, intron 4 of 4) intron (NM_005668, intron 4 of 4) -3442 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 245.333-13 chr17 53466849 53467062 + 1.33333 NA Intergenic Intergenic -355972 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 378.666-4 chr13 103796643 103796962 + 1.33333 NA Intergenic Intergenic 371602 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 333.666-4 chr4 125312013 125312558 + 1.33333 NA Intergenic Intergenic -4127 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 234.333-39 chr9 16191346 16191817 + 1.33333 NA Intergenic Intergenic 61526 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 176-21 chr2 78849233 78849454 + 1.33333 NA Intergenic Intergenic -176359 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 319.999-2 chrX 130539567 130539941 + 1.33333 NA Intergenic Intergenic 44813 NR_027141 55855 Hs.567120 NM_018472 DENND10P1 FAM45B|FAM45BP|HT011 DENND10 pseudogene 1 pseudo 343.333 chr11 8683992 8684274 + 1.33333 NA promoter-TSS (NR_002580) promoter-TSS (NR_002580) -94 NR_002580 619562 Hs.745527 NR_002580 ENSG00000200983 SNORA3A ACA3|SNORA3|SNORA45A small nucleolar RNA, H/ACA box 3A snoRNA 203.667-56 chr8 116419756 116420227 + 1.33333 NA Intergenic L1ME1|LINE|L1 -94932 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 271.666-12 chr9 75623653 75623967 + 1.33333 NA Intergenic L1PREC2|LINE|L1 -266834 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 266.166-6 chr7 17590152 17590560 + 1.33333 NA Intergenic MER121|DNA|hAT? -31447 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 284-10 chr16 53544616 53544881 + 1.33333 NA Intergenic Intergenic -41444 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 174.333-7 chr11 75419089 75419310 + 1.33333 NA intron (NM_001256802, intron 6 of 6) Looper|DNA|PiggyBac 11430 NM_001039548 283212 Hs.292451 NM_173583 ENSG00000149243 KLHL35 - kelch like family member 35 protein-coding 188.667-11 chr12 57213418 57213657 + 1.33333 NA TTS (NM_002332) TTS (NM_002332) -3257 NM_007224 11247 Hs.745023 NM_007224 ENSG00000182379 NXPH4 NPH4 neurexophilin 4 protein-coding 224.667-27 chr2 186069975 186070282 + 1.33333 NA intron (NR_110218, intron 3 of 5) intron (NR_110218, intron 3 of 5) 16189 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 334-17 chr9 76682074 76682473 + 1.33333 NA intron (NM_001308048, intron 9 of 17) (AT)n|Simple_repeat|Simple_repeat 10142 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 164.333-15 chr14 23311997 23312276 + 1.33333 NA TTS (NM_004050) TTS (NM_004050) 5276 NM_001199839 599 Hs.410026 NM_004050 ENSG00000129473 BCL2L2 BCL-W|BCL2-L-2|BCLW|PPP1R51 BCL2 like 2 protein-coding 179.333-10 chr12 59847763 59847959 + 1.33333 NA Intergenic Intergenic 158491 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 307-3 chr10 49519716 49520201 + 1.33333 NA intron (NM_001277058, intron 5 of 5) intron (NM_001277058, intron 5 of 5) 4323 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 402.333 chr1 247372772 247373263 + 1.33333 NA Intergenic AluSz|SINE|Alu -41150 NM_032752 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 276.666 chr1 33488324 33488586 + 1.33333 NA intron (NM_145238, intron 2 of 7) intron (NM_145238, intron 2 of 7) 15810 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 749.5-2 chr2 113198938 113199878 + 1.33333 NA intron (NM_012455, intron 16 of 16) CpG-16441 25437 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 175.333-43 chr5 4625507 4625695 + 1.33333 NA Intergenic LTR43B|LTR|ERV1 -147880 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 271.166-4 chr2 52226580 52226974 + 1.33333 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -143871 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 323.666-7 chr4 185143242 185143543 + 1.33333 NA exon (NM_001151, exon 1 of 4) exon (NM_001151, exon 1 of 4) 126 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 238.833-10 chr19 19385346 19385700 + 1.33333 NA promoter-TSS (NM_001300946) promoter-TSS (NM_001300946) -280 NM_001300946 54815 Hs.118964 NM_017660 ENSG00000167491 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 385.666-5 chr3 75079736 75080118 + 1.33333 NA Intergenic L1ME3E|LINE|L1 -134549 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 184.5-49 chr7 23974422 23974856 + 1.33333 NA Intergenic L1MA8|LINE|L1 264420 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 419.333-6 chr9 98034938 98035391 + 1.33333 NA Intergenic L2a|LINE|L2 -21568 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 294.166-2 chr12 69388306 69388602 + 1.33333 NA intron (NM_001300950, intron 4 of 4) MIRb|SINE|MIR 28711 NM_006530 8089 Hs.4029 NM_006530 ENSG00000127337 YEATS4 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 YEATS domain containing 4 protein-coding 220-35 chr8 130143488 130143769 + 1.33333 NA intron (NM_001362925, intron 14 of 29) intron (NM_001362925, intron 14 of 29) -58860 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 254.333-30 chr5 110299357 110299749 + 1.33333 NA Intergenic Intergenic 214362 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 274.5-5 chr12 82687940 82688335 + 1.33333 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 982 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 163.5-19 chr16 47380660 47380831 + 1.33333 NA intron (NM_030790, intron 6 of 17) ERV3-16A3_I-int|LTR|ERVL 80318 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 218.666-4 chr15 25517130 25517362 + 1.33333 NA Intergenic Intergenic -78190 NM_000462 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 242.5-9 chr10 93067229 93067456 + 1.33333 NA intron (NM_183374, intron 5 of 5) intron (NM_183374, intron 5 of 5) -6133 NM_057157 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 337.333-2 chr1 73572124 73572551 + 1.33333 NA Intergenic L1MD3|LINE|L1 -102342 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 259.333-14 chr16 57186040 57186285 + 1.33333 NA promoter-TSS (NM_001305163) promoter-TSS (NM_001305163) -46 NM_001354087 80011 Hs.396740 NM_024946 ENSG00000172775 FAM192A C16orf94|CDA018|CDA10|NIP30|PIP30 family with sequence similarity 192 member A protein-coding 190.333-28 chr3 178604654 178605016 + 1.33333 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 45985 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 261.333-11 chr3 189195991 189196228 + 1.33333 NA intron (NM_198485, intron 1 of 5) MIR3|SINE|MIR 24138 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 216.666-3 chr14 24541820 24542167 + 1.33333 NA Intergenic L1MEc|LINE|L1 -33728 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 287.333-5 chr15 56879748 56880125 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -38154 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 269.333-4 chr14 45252079 45252370 + 1.33333 NA intron (NM_018353, intron 1 of 16) L1ME3G|LINE|L1 978 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 262.999 chr16 10256722 10256954 + 1.33333 NA Intergenic Intergenic -73930 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 334.333-15 chr9 120712816 120713356 + 1.33333 NA intron (NM_001080497, intron 1 of 5) intron (NM_001080497, intron 1 of 5) 1384 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 390.333-4 chr11 105665312 105665808 + 1.33333 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 54854 NM_001112812 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 222.333-3 chr1 152803476 152803924 + 1.33333 NA Intergenic Intergenic 2951 NM_178351 353133 NM_178351 ENSG00000197084 LCE1C LEP3 late cornified envelope 1C protein-coding 221.666-10 chrX 41591858 41592059 + 1.33333 NA intron (NM_003688, intron 12 of 26) intron (NM_003688, intron 12 of 26) -97015 NM_005300 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 245.333-2 chr1 58459792 58460138 + 1.33333 NA Intergenic AluSz6|SINE|Alu 86761 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 216-24 chr2 27516739 27517006 + 1.33333 NA intron (NM_001486, intron 16 of 18) intron (NM_001486, intron 16 of 18) 20033 NM_001486 2646 Hs.89771 NM_001486 ENSG00000084734 GCKR FGQTL5|GKRP glucokinase regulator protein-coding 363.667-11 chr8 123767945 123768482 + 1.33333 NA promoter-TSS (NM_001317917) promoter-TSS (NM_001317917) -226 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 359.499-2 chr20 54394817 54395215 + 1.33333 NA Intergenic L1ME2|LINE|L1 -80577 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 350.833-3 chr2 237363610 237364036 + 1.33333 NA intron (NM_057166, intron 10 of 40) Charlie22a|DNA|hAT-Charlie 50341 NM_057164 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 165.333-4 chr1 174296686 174297013 + 1.33333 NA intron (NM_001366445, intron 10 of 13) intron (NM_001366445, intron 10 of 13) 21749 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 243.501-2 chr20 10358563 10358849 + 1.33333 NA Intergenic L1ME3E|LINE|L1 73219 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 169.666-4 chr7 131560734 131560879 + 1.33333 NA Intergenic Intergenic -4178 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 356.5-9 chr8 103708031 103708579 + 1.33333 NA intron (NM_001348497, intron 2 of 22) L1MA4|LINE|L1 -110915 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 249.166-4 chr5 38477992 38478178 + 1.33333 NA 3' UTR (NM_002310, exon 20 of 20) 3' UTR (NM_002310, exon 20 of 20) 32539 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 270.5-16 chr18 30367576 30367836 + 1.33333 NA Intergenic Intergenic 68796 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 405.501 chr1 23316170 23316818 + 1.33333 NA intron (NM_001297622, intron 6 of 8).2 intron (NM_001297622, intron 6 of 8).2 27790 NM_001297620 10236 Hs.373763 NM_005826 ENSG00000125944 HNRNPR HNRPR|hnRNP-R heterogeneous nuclear ribonucleoprotein R protein-coding 225.666-2 chr10 52445936 52446302 + 1.33333 NA Intergenic Intergenic 9153 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 206.833-24 chr8 65834684 65835063 + 1.33333 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) 7191 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 227.666-7 chr2 140023229 140023464 + 1.33333 NA Intergenic L3|LINE|CR1 563339 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 248-26 chr3 95242719 95243005 + 1.33333 NA Intergenic Intergenic 304599 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 178-27 chr3 168066131 168066322 + 1.33333 NA intron (NM_001308155, intron 1 of 14) intron (NM_001308155, intron 1 of 14) 29698 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 216.667-27 chr2 144445367 144445651 + 1.33333 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -74105 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 392.999-3 chr6 121875242 121875641 + 1.33333 NA Intergenic Cheshire|DNA|hAT-Charlie 439795 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 188.833-20 chr2 81119215 81119470 + 1.33333 NA Intergenic Intergenic 347604 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 265.5-23 chr4 32297383 32297678 + 1.33333 NA Intergenic L1ME2|LINE|L1 -53508 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 286.167-11 chr2 48412314 48412544 + 1.33333 NA Intergenic Intergenic -28337 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 228.833-7 chr14 74804435 74804812 + 1.33333 NA intron (NM_019589, intron 6 of 20) L2c|LINE|L2 41307 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 180.5-19 chr2 141537761 141537907 + 1.33333 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 593867 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 184.666 chr11 37000571 37000839 + 1.33333 NA Intergenic Intergenic -402426 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 371.166-4 chr8 105275485 105275978 + 1.33333 NA Intergenic Intergenic -42707 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 304.833-8 chr2 667605 667914 + 1.33333 NA 3' UTR (NM_001352681, exon 5 of 5) 3' UTR (NM_001352681, exon 5 of 5) 8945 NM_001352681 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 312.666-10 chr6 132295807 132296141 + 1.33333 NA TTS (NM_015529) TTS (NM_015529) 105501 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 649.5 chr1 206607894 206608738 + 1.33333 NA exon (NM_001201478, exon 4 of 13) exon (NM_001201478, exon 4 of 13) 4149 NM_006893 1939 Hs.497581 NM_006893 ENSG00000143486 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 262.667-20 chr2 181504719 181505063 + 1.33333 NA intron (NM_000885, intron 15 of 27) intron (NM_000885, intron 15 of 27) 47505 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 328.667 chr1 62783746 62784075 + 1.33333 NA promoter-TSS (NM_032852) promoter-TSS (NM_032852) -196 NM_178221 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 210-22 chr2 99559590 99560198 + 1.33333 NA intron (NM_001025108, intron 20 of 23) MER45B|DNA|hAT-Tip100 -69877 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 208-41 chr9 129832126 129832376 + 1.33333 NA intron (NM_016520, intron 4 of 8) MER2|DNA|TcMar-Tigger 3024 NM_016520 51759 Hs.278429 NM_016520 ENSG00000136819 C9orf78 CSU2|HCA59|HSPC220|bA409K20.3 chromosome 9 open reading frame 78 protein-coding 245.167-12 chr4 158496194 158496472 + 1.33333 NA Intergenic Intergenic -25381 NM_001253733 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 252.5 chr1 35035492 35035797 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -3699 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 316.5-3 chr1 200004809 200005314 + 1.33333 NA Intergenic AluJr|SINE|Alu -22649 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 260.166-4 chr17 63462685 63462960 + 1.33333 NA Intergenic AluSx|SINE|Alu -14239 NM_000789 1636 Hs.298469 NM_000789 ENSG00000159640 ACE ACE1|CD143|DCP|DCP1 angiotensin I converting enzyme protein-coding 304-21 chr3 118367234 118367562 + 1.33333 NA Intergenic L1M4b|LINE|L1 -274370 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 406.333-4 chr19 50781030 50781485 + 1.33333 NA intron (NR_134883, intron 3 of 3) MER5B|DNA|hAT-Charlie 4953 NR_134883 105372440 Hs.606943 NR_134883 ENSG00000261341 LOC105372440 - uncharacterized LOC105372440 ncRNA 182.333-7 chr13 70853694 70853832 + 1.33333 NA Intergenic L1MEf|LINE|L1 -161378 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 261.333-3 chr12 92630325 92630563 + 1.33333 NA Intergenic L2b|LINE|L2 -72399 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 292.166-3 chr17 61625922 61626218 + 1.33333 NA Intergenic AluSq|SINE|Alu -34851 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 480.834 chr6 152982931 152983602 + 1.33333 NA promoter-TSS (NM_012177) promoter-TSS (NM_012177) -225 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 191.833-9 chr17 60744088 60744333 + 1.33333 NA intron (NM_001330413, intron 5 of 25) intron (NM_001330413, intron 5 of 25) 66359 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 312.499 chr11 65471987 65472221 + 1.33333 NA Intergenic Intergenic 16818 NR_160549 101927789 NR_160547 LOC101927789 - FAU, ubiquitin like and ribosomal protein S30 fusion pseudogene pseudo 211.333-4 chr10 9187255 9187481 + 1.33333 NA Intergenic Intergenic -88245 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 290.667-8 chr15 79378801 79379374 + 1.33333 NA intron (NM_001330376, intron 2 of 2) Charlie2a|DNA|hAT-Charlie -53429 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 352.666-10 chr5 51314300 51314722 + 1.33333 NA Intergenic L1MC1|LINE|L1 68821 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 281.5-9 chr17 29050358 29050673 + 1.33333 NA intron (NM_016518, intron 2 of 7) AluJo|SINE|Alu 7374 NM_016518 51268 Hs.462585 NM_016518 ENSG00000179761 PIPOX LPIPOX pipecolic acid and sarcosine oxidase protein-coding 297.333-4 chr11 41673478 41673835 + 1.33333 NA Intergenic Intergenic -40912 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 635.834 chr17 8156244 8157281 + 1.33333 NA Intergenic CpG -4358 NM_002616 5187 Hs.445534 NM_002616 ENSG00000179094 PER1 PER|RIGUI|hPER period circadian regulator 1 protein-coding 258.001-2 chr9 92842060 92842444 + 1.33333 NA Intergenic Intergenic 32641 NR_026868 138649 Hs.643597 NM_001010925 ENSG00000187984 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 249.666-8 chrX 119008101 119008326 + 1.33333 NA intron (NM_001031855, intron 6 of 10) intron (NM_001031855, intron 6 of 10) 31881 NM_001289109 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 353.999-3 chr5 121010366 121010657 + 1.33333 NA Intergenic Intergenic -312039 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 321.333-9 chr2 181270899 181271370 + 1.33333 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) 34518 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 363.999 chr10 92849471 92849937 + 1.33333 NA intron (NM_001319195, intron 1 of 21) intron (NM_001319195, intron 1 of 21) 1184 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 250.667-8 chr14 50212613 50212948 + 1.33333 NA intron (NM_006939, intron 1 of 22) HAL1|LINE|L1 18798 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 224.833-28 chrX 15143529 15143742 + 1.33333 NA Intergenic MIRb|SINE|MIR 126448 NM_001031739 140462 Hs.19404 NM_024087 ENSG00000102048 ASB9 - ankyrin repeat and SOCS box containing 9 protein-coding 426-7 chr15 64913472 64913862 + 1.33333 NA intron (NM_182703, intron 1 of 14) intron (NM_182703, intron 1 of 14) 1765 NM_182703 348094 Hs.207157 NM_182703 ENSG00000166839 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 297.999-3 chr7 53809207 53809436 + 1.33333 NA intron (NR_038371, intron 1 of 5) intron (NR_038371, intron 1 of 5) 2610 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 352.667-3 chr15 98620799 98621219 + 1.33333 NA Intergenic Intergenic -27530 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 179-38 chr7 3065640 3065904 + 1.33333 NA Intergenic Intergenic -21905 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 168.666-2 chr1 34961920 34962091 + 1.33333 NA Intergenic L1MEg|LINE|L1 16701 NR_037869 653160 Hs.533986 NR_037869 ENSG00000241014 LOC653160 - uncharacterized LOC653160 ncRNA 341.167-8 chr2 30239226 30239861 + 1.33333 NA intron (NM_030915, intron 2 of 2) intron (NM_030915, intron 2 of 2) 8009 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 165.167-5 chr11 107043005 107043505 + 1.33333 NA Intergenic Intergenic -24779 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 218.666-15 chr8 139438847 139439220 + 1.33333 NA Intergenic L1M4|LINE|L1 264090 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 281.666-3 chr6 24721330 24721969 + 1.33333 NA Intergenic CpG -2495 NM_030939 81688 Hs.744857 NM_030939 ENSG00000112308 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 292.333-6 chr11 22828403 22828781 + 1.33333 NA intron (NM_148893, intron 1 of 3) L2a|LINE|L2 787 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 216 chr1 44706495 44706714 + 1.33333 NA intron (NM_001145636, intron 6 of 11) intron (NM_001145636, intron 6 of 11) 15297 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 264.166-2 chr17 5259967 5260232 + 1.33333 NA Intergenic Intergenic -22185 NM_001083585 9135 Hs.584784 NM_004703 ENSG00000029725 RABEP1 RAB5EP|RABPT5 rabaptin, RAB GTPase binding effector protein 1 protein-coding 230.167-7 chr12 49489700 49490045 + 1.33333 NA intron (NM_001293285, intron 6 of 14) intron (NM_001293285, intron 6 of 14) -49158 NM_001314030 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 235-3 chr1 206764864 206765157 + 1.33333 NA Intergenic L1M2|LINE|L1 -5763 NM_153758 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 371.667-7 chr5 148383460 148383818 + 1.33333 NA promoter-TSS (NM_030793) promoter-TSS (NM_030793) 211 NR_105057 102546294 Hs.660461 NR_105057 ENSG00000247199 LOC102546294 - uncharacterized LOC102546294 ncRNA 167.666 chr1 242532433 242532603 + 1.33333 NA Intergenic Intergenic -7821 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 215.667-21 chr2 60940452 60940765 + 1.33333 NA 3' UTR (NM_001322127, exon 17 of 17) 3' UTR (NM_001322127, exon 17 of 17) 59034 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 251.666-2 chr14 60119237 60119515 + 1.33333 NA intron (NM_001330177, intron 7 of 10) intron (NM_001330177, intron 7 of 10) 27453 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 200-45 chr8 102530590 102530802 + 1.33333 NA Intergenic Intergenic -20893 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 197.167-32 chr5 85830694 85830921 + 1.33333 NA Intergenic Intergenic -451637 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 276.333-12 chr7 43584613 43585102 + 1.33333 NA intron (NM_004760, intron 1 of 6) intron (NM_004760, intron 1 of 6) 1749 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 173-5 chr1 118103332 118103625 + 1.33333 NA intron (NM_206996, intron 4 of 48) intron (NM_206996, intron 4 of 48) 81750 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 206.833-21 chr6 82840990 82841376 + 1.33333 NA Intergenic L1MC3|LINE|L1 224658 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 270-14 chr14 67361716 67362065 + 1.33333 NA intron (NM_004094, intron 1 of 7) intron (NM_004094, intron 1 of 7) 1562 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 207-26 chr6 69796870 69797201 + 1.33333 NA promoter-TSS (NM_018368) promoter-TSS (NM_018368) -25 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 405.333 chr1 163167718 163168258 + 1.33333 NA intron (NR_110699, intron 2 of 3) intron (NR_110699, intron 2 of 3) 6313 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 297.333-12 chr21 29552547 29552868 + 1.33333 NA 3' UTR (NM_000830, exon 17 of 17) 3' UTR (NM_000830, exon 17 of 17) -43333 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 306.5-12 chr2 100310751 100311059 + 1.33333 NA intron (NM_198461, intron 1 of 11) Cheshire|DNA|hAT-Charlie 11828 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 204.5-20 chr2 164479602 164479931 + 1.33333 NA Intergenic Intergenic 88729 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 241-33 chr9 73075534 73075755 + 1.33333 NA Intergenic Intergenic -76221 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 272.833-5 chr12 120689240 120689630 + 1.33333 NA intron (NM_001303627, intron 1 of 4) intron (NM_001303627, intron 1 of 4) 1125 NM_001303627 9761 Hs.744910 NM_014730 ENSG00000110917 MLEC KIAA0152 malectin protein-coding 296.667-22 chr8 77641390 77641724 + 1.33333 NA Intergenic Intergenic 190860 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 200.833-30 chrX 135956127 135956386 + 1.33333 NA Intergenic L1MC3|LINE|L1 17732 NM_001330000 93380 Hs.110702 NM_173470 ENSG00000169446 MMGT1 EMC5|TMEM32 membrane magnesium transporter 1 protein-coding 290.166-6 chr4 42866320 42866579 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -26817 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 339-17 chr9 30116086 30116630 + 1.33333 NA Intergenic Intergenic 292096 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 228.667-16 chr18 43279509 43279979 + 1.33333 NA Intergenic Intergenic -2254 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 337.666-4 chr19 28516505 28516868 + 1.33333 NA intron (NR_110759, intron 5 of 9) L1MA10|LINE|L1 -90002 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 234.833-2 chr1 40013646 40013889 + 1.33333 NA Intergenic MLT1J1|LTR|ERVL-MaLR -26298 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 310.333-14 chr7 88595329 88595623 + 1.33333 NA Intergenic L1PB4|LINE|L1 -164224 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 390.334-4 chr4 73654731 73655241 + 1.33333 NA Intergenic Intergenic -34355 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 280.333-14 chr16 64587469 64587979 + 1.33333 NA Intergenic Intergenic 534339 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 293.666 chr1 42924104 42924508 + 1.33333 NA Intergenic CpG 34562 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 391.333-2 chr2 41329902 41330433 + 1.33333 NA Intergenic Intergenic -547388 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 260.333-8 chr2 64055826 64056025 + 1.33333 NA Intergenic L1ME5|LINE|L1 -36497 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 244.333-10 chr15 70651016 70651277 + 1.33333 NA Intergenic Intergenic 15897 NR_126482 104548973 NR_126482 ENSG00000280515 SALRNA2 SAL-RNA2|XLOC_025931 senescence associated long non-coding RNA 2 ncRNA 330.5-9 chr4 64109675 64110152 + 1.33333 NA Intergenic Intergenic 299537 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 253.666-2 chr3 189187996 189188412 + 1.33333 NA intron (NM_198485, intron 1 of 5) intron (NM_198485, intron 1 of 5) 16233 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 276.166-3 chr6 47560764 47560984 + 1.33333 NA intron (NM_012120, intron 5 of 17) L1MC4|LINE|L1 83085 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 276.666-2 chr12 12035151 12035439 + 1.33333 NA Intergenic L1MA8|LINE|L1 -14566 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 303.333-14 chr5 81419141 81419383 + 1.33333 NA 3' UTR (NM_001256732, exon 17 of 17) 3' UTR (NM_001256732, exon 17 of 17) -25128 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 171-34 chr2 157782260 157782460 + 1.33333 NA intron (NM_001111067, intron 3 of 10) intron (NM_001111067, intron 3 of 10) 56270 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 366.666-2 chr20 49261268 49261603 + 1.33333 NA intron (NM_021035, intron 6 of 13) L1PA13|LINE|L1 16622 NM_021035 57169 Hs.371794 NM_021035 ENSG00000124201 ZNFX1 - zinc finger NFX1-type containing 1 protein-coding 250-27 chr5 39305447 39305753 + 1.33333 NA intron (NM_001737, intron 9 of 10) intron (NM_001737, intron 9 of 10) -34951 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 242-17 chr2 159880817 159881035 + 1.33333 NA intron (NM_002349, intron 8 of 34) MER1B|DNA|hAT-Charlie 23830 NM_002349 4065 Hs.153563 NM_002349 ENSG00000054219 LY75 CD205|CLEC13B|DEC-205|GP200-MR6|LY-75 lymphocyte antigen 75 protein-coding 240-5 chr10 99141380 99141715 + 1.33333 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 94328 NM_001166246 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 187-33 chr5 24492034 24492213 + 1.33333 NA intron (NM_001317222, intron 9 of 10) intron (NM_001317222, intron 9 of 10) 152855 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 318.833-7 chr6 94223766 94224289 + 1.33333 NA Intergenic L1PREC2|LINE|L1 505724 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 251.666 chr1 234150497 234150954 + 1.33333 NA intron (NM_173508, intron 2 of 7) HAL1M8|LINE|L1 -63486 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 433.834-3 chr22 24482153 24482724 + 1.33333 NA intron (NR_028483, intron 1 of 7) intron (NR_028483, intron 1 of 7) 12636 NR_028483 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 234.833-18 chr3 31267184 31267478 + 1.33333 NA Intergenic L1ME3|LINE|L1 -105544 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 332.833-12 chr4 142120202 142120641 + 1.33333 NA intron (NM_001331040, intron 21 of 25) L1MB7|LINE|L1 483838 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 168.833-14 chr21 21860777 21861076 + 1.33333 NA Intergenic Intergenic 113941 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 175.833-22 chr2 6094727 6095089 + 1.33333 NA Intergenic Tigger2|DNA|TcMar-Tigger 112930 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 350.5-11 chr7 51123553 51124118 + 1.33333 NA intron (NM_015198, intron 6 of 12) intron (NM_015198, intron 6 of 12) 192974 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 282.333-14 chr6 121843567 121843915 + 1.33333 NA Intergenic L1ME1|LINE|L1 408095 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 223-38 chr5 45953249 45953545 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr -257017 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 357.833-5 chr17 69253089 69253509 + 1.33333 NA intron (NM_018672, intron 33 of 37) intron (NM_018672, intron 33 of 37) -8484 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 230.666-5 chr6 40688824 40689209 + 1.33333 NA Intergenic Intergenic -101652 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 187.167-12 chr12 10268355 10268760 + 1.33333 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) 29596 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 176.833 chr1 177317446 177317630 + 1.33333 NA Intergenic MER2|DNA|TcMar-Tigger -34048 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 195.666-3 chr5 85908921 85909129 + 1.33333 NA Intergenic Intergenic -373419 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 186.666-4 chr3 44301425 44301612 + 1.33333 NA intron (NM_001145030, intron 12 of 19) L1MC4|LINE|L1 -36601 NM_001029840 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 190-53 chr8 120609788 120610120 + 1.33333 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -151299 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 328.333-2 chr1 27365689 27366217 + 1.33333 NA intron (NM_001297609, intron 1 of 27) CpG 1008 NM_001297609 9064 Hs.194694 NM_004672 ENSG00000142733 MAP3K6 ASK2|MAPKKK6|MEKK6 mitogen-activated protein kinase kinase kinase 6 protein-coding 238.333-38 chr7 13742914 13743178 + 1.33333 NA Intergenic Intergenic 243468 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 218-33 chr4 101826311 101826667 + 1.33333 NA intron (NM_001083907, intron 1 of 16) MIR|SINE|MIR 12647 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 418.666-4 chr6 55668590 55669072 + 1.33333 NA Intergenic L1MEf|LINE|L1 -89617 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 193.167-6 chr12 44536728 44537000 + 1.33333 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 338797 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 264.999 chr14 70013455 70013724 + 1.33333 NA intron (NM_001034852, intron 10 of 11) intron (NM_001034852, intron 10 of 11) 35456 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 273.999-3 chr4 166163823 166164194 + 1.33333 NA Intergenic Intergenic 290771 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 194.666-3 chr12 22604484 22604650 + 1.33333 NA intron (NR_135030, intron 2 of 3) AluJb|SINE|Alu 20479 NR_135031 105369691 Hs.556287 NR_135030 LOC105369691 - uncharacterized LOC105369691 ncRNA 357.167-3 chr2 126001127 126001601 + 1.33333 NA Intergenic L1ME1|LINE|L1 116621 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 175-19 chr15 67955472 67955675 + 1.33333 NA Intergenic Intergenic -98606 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 305.501-2 chr6 79006154 79006570 + 1.33333 NA intron (NM_017934, intron 15 of 39) intron (NM_017934, intron 15 of 39) 71892 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 437-4 chr21 30770866 30771654 + 1.33333 NA Intergenic Intergenic -15832 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 281.667-2 chr1 153177860 153178164 + 1.33333 NA intron (NR_110685, intron 2 of 2) L1ME2|LINE|L1 3494 NR_110685 101928009 Hs.385720 NR_110685 ENSG00000229699 LOC101928009 - uncharacterized LOC101928009 ncRNA 165.667-52 chr8 34185329 34185575 + 1.33333 NA Intergenic MIRb|SINE|MIR -585346 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 328.666-6 chr9 79665499 79665833 + 1.33333 NA intron (NM_001351563, intron 7 of 17) intron (NM_001351563, intron 7 of 17) 92489 NM_001351547 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 276.833-3 chr12 15151189 15151869 + 1.33333 NA promoter-TSS (NR_046559) promoter-TSS (NR_046559) -394 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 308.333-7 chr18 62184935 62185319 + 1.33333 NA intron (NM_176787, intron 1 of 30) intron (NM_176787, intron 1 of 30) 1929 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 244-16 chr2 176103984 176104422 + 1.33333 NA Intergenic Intergenic -3077 NM_021192 3237 Hs.421136 NM_021192 ENSG00000128713 HOXD11 HOX4|HOX4F homeobox D11 protein-coding 212.5-8 chr10 81039217 81039581 + 1.33333 NA Intergenic L1MDa|LINE|L1 389602 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 329.666-6 chr3 30748515 30748960 + 1.33333 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 142136 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 248.833-29 chrX 115330701 115330969 + 1.33333 NA Intergenic Intergenic 41120 NM_001318840 51213 Hs.242183 NM_016383 ENSG00000102021 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 296.166-7 chr8 120949725 120950068 + 1.33333 NA Intergenic L2a|LINE|L2 -137850 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 248.666-5 chr20 40728746 40729002 + 1.33333 NA Intergenic L1M6|LINE|L1 -14251 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 188.667-4 chr10 19496943 19497454 + 1.33333 NA intron (NM_001142308, intron 30 of 39) intron (NM_001142308, intron 30 of 39) 231352 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 223-42 chr7 48034371 48034667 + 1.33333 NA promoter-TSS (NM_001267865) promoter-TSS (NM_001267865) -992 NM_001267865 136288 Hs.258357 NM_001100159 ENSG00000164746 C7orf57 - chromosome 7 open reading frame 57 protein-coding 169.333-46 chr4 59371303 59371498 + 1.33333 NA Intergenic Intergenic 357827 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 168.333-63 chr8 25217010 25217217 + 1.33333 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 32424 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 243.999 chr14 57719219 57719424 + 1.33333 NA intron (NR_159373, intron 1 of 10) L1MA2|LINE|L1 145678 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 356-22 chr8 131523526 131523995 + 1.33333 NA Intergenic L1MA8|LINE|L1 -380333 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 300.5-24 chr8 137775070 137775494 + 1.33333 NA Intergenic Intergenic 308263 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 182.5-12 chr12 92243947 92244247 + 1.33333 NA Intergenic L2a|LINE|L2 98012 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 291.333-7 chr14 52098195 52098612 + 1.33333 NA Intergenic Intergenic -29344 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 227-7 chr11 21917371 21917747 + 1.33333 NA Intergenic L1M8|LINE|L1 -275526 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 207.333-29 chr3 80717900 80718058 + 1.33333 NA Intergenic Intergenic -46918 NR_147143 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 225.333-5 chr10 26069597 26069923 + 1.33333 NA intron (NM_017433, intron 12 of 34) intron (NM_017433, intron 12 of 34) 135531 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 164.166 chr10 17087120 17087467 + 1.33333 NA intron (NM_001081, intron 15 of 66) intron (NM_001081, intron 15 of 66) 42524 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 323.333-4 chr1 206792519 206792990 + 1.33333 NA intron (NM_153758, intron 1 of 6) MIR|SINE|MIR -20260 NM_000572 3586 Hs.193717 NM_000572 ENSG00000136634 IL10 CSIF|GVHDS|IL-10|IL10A|TGIF interleukin 10 protein-coding 189.666-5 chr6 27231050 27231262 + 1.33333 NA Intergenic Intergenic -16545 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP serine protease 16 protein-coding 246-34 chr8 136793317 136793958 + 1.33333 NA intron (NR_147196, intron 3 of 5) LTR12C|LTR|ERV1 262839 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 200.5-10 chr14 30677557 30677762 + 1.33333 NA intron (NM_016106, intron 14 of 24) intron (NM_016106, intron 14 of 24) 55340 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 200-17 chr17 59711648 59711955 + 1.33333 NA intron (NM_001329394, intron 1 of 11) intron (NM_001329394, intron 1 of 11) 4147 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 284.666-5 chr20 12575598 12575955 + 1.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 361187 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 213-29 chr4 35723506 35723677 + 1.33333 NA Intergenic AluJr|SINE|Alu 520348 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 209-4 chr1 95017614 95017862 + 1.33333 NA intron (NM_144988, intron 3 of 3) intron (NM_144988, intron 3 of 3) -43858 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 380 chr1 58581901 58582428 + 1.33333 NA Intergenic MIRc|SINE|MIR -4912 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor associated calcium signal transducer 2 protein-coding 255.667-14 chr6 50853134 50853408 + 1.33333 NA Intergenic Intergenic 34400 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 306.5-7 chr12 128824488 128824905 + 1.33333 NA promoter-TSS (NM_145648) promoter-TSS (NM_145648) -738 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 320.5-13 chr5 42368031 42368375 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -55236 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 310.833-8 chr21 18840073 18840567 + 1.33333 NA Intergenic L1PA16|LINE|L1 -80508 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 399.667-7 chr7 111755006 111755444 + 1.33333 NA intron (NM_001363540, intron 42 of 52) MIRc|SINE|MIR -53280 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 318.833-2 chr14 69439184 69439579 + 1.33333 NA intron (NM_001330185, intron 2 of 5) L1M3|LINE|L1 40689 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 257.333-6 chr11 130086019 130086351 + 1.33333 NA intron (NM_001243299, intron 1 of 16) L1MB4|LINE|L1 15617 NM_001243299 334 Hs.370247 NM_001642 ENSG00000084234 APLP2 APLP-2|APPH|APPL2|CDEBP amyloid beta precursor like protein 2 protein-coding 182-39 chr5 122458414 122458700 + 1.33333 NA intron (NR_051996, intron 2 of 5) intron (NR_051996, intron 2 of 5) 20530 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 302.333-11 chr4 30708825 30709254 + 1.33333 NA Intergenic L1M2|LINE|L1 -11330 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 321.166 chr1 54984796 54985109 + 1.33333 NA intron (NM_182532, intron 1 of 2) intron (NM_182532, intron 1 of 2) 4324 NM_182532 199964 Hs.663950 NM_182532 ENSG00000143001 TMEM61 - transmembrane protein 61 protein-coding 307.833-8 chr4 156959541 156959843 + 1.33333 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 12107 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 284.167-8 chr2 11682186 11682607 + 1.33333 NA intron (NM_001349207, intron 1 of 20) intron (NM_001349207, intron 1 of 20) 4852 NM_001349208 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 376.833-2 chr10 81230155 81230591 + 1.33333 NA Intergenic Intergenic 580576 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 288.5-32 chr8 61714512 61714886 + 1.33333 NA promoter-TSS (NM_032466) promoter-TSS (NM_032466) -59 NM_001164756 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 330-9 chr17 79878984 79879486 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -39795 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 173.666-6 chr5 153701101 153701252 + 1.33333 NA intron (NM_000827, intron 10 of 15) intron (NM_000827, intron 10 of 15) 197811 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 202-12 chr17 41695336 41695526 + 1.33333 NA Intergenic Intergenic 6546 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 193.333-7 chr10 93163773 93163977 + 1.33333 NA Intergenic L1M4a1|LINE|L1 89982 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 284.5-6 chr12 54360774 54361065 + 1.33333 NA intron (NR_120487, intron 1 of 3) intron (NR_120487, intron 1 of 3) 3567 NM_020370 53831 Hs.306199 NM_020370 ENSG00000139572 GPR84 EX33|GPCR4 G protein-coupled receptor 84 protein-coding 212-44 chr7 120381662 120382009 + 1.33333 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 108660 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 357.666-3 chr8 132291453 132291781 + 1.33333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 155645 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 362.501-5 chr4 157877497 157878090 + 1.33333 NA Intergenic L1M4a1|LINE|L1 -292959 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 245.166-2 chr2 118960598 118960899 + 1.33333 NA intron (NM_006770, intron 1 of 16) L1PA10|LINE|L1 18579 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 308.666-7 chr5 10381538 10381878 + 1.33333 NA intron (NM_001270660, intron 3 of 24) intron (NM_001270660, intron 3 of 24) -20656 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 199.333-31 chr20 18664703 18664909 + 1.33333 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) 33902 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 345-26 chr8 53509976 53510386 + 1.33333 NA Intergenic Intergenic 13784 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 312-21 chr8 27617096 27617448 + 1.33333 NA Intergenic L3b|LINE|CR1 -2572 NM_001831 1191 Hs.436657 NM_001831 ENSG00000120885 CLU AAG4|APO-J|APOJ|CLI|CLU1|CLU2|KUB1|NA1/NA2|SGP-2|SGP2|SP-40|TRPM-2|TRPM2 clusterin protein-coding 284.166-6 chr5 78471 78696 + 1.33333 NA Intergenic Intergenic -13585 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 279.333-23 chr8 143902736 143903111 + 1.33333 NA Intergenic Intergenic -24459 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 177.333-35 chr7 36889667 36889897 + 1.33333 NA intron (NM_001206480, intron 17 of 21) intron (NM_001206480, intron 17 of 21) 29650 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 261-11 chr2 160285031 160285241 + 1.33333 NA intron (NM_002897, intron 7 of 13) AluJr|SINE|Alu -13241 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 222.833-16 chr4 4813076 4813342 + 1.33333 NA Intergenic Intergenic -31228 NR_125765 103695434 Hs.550830 NR_125765 ENSG00000273396 LINC01396 - long intergenic non-protein coding RNA 1396 ncRNA 313.167-6 chr12 38780811 38781279 + 1.33333 NA intron (NM_153634, intron 6 of 19) L1MEd|LINE|L1 124546 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 442.666-3 chr7 50621980 50622616 + 1.33333 NA intron (NM_001350816, intron 7 of 17) intron (NM_001350816, intron 7 of 17) -56893 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 333.667-16 chrX 112840862 112841360 + 1.33333 NA promoter-TSS (NM_133265) promoter-TSS (NM_133265) -280 NM_133265 154796 Hs.528051 NM_133265 ENSG00000126016 AMOT - angiomotin protein-coding 259.833-10 chr2 47902503 47902779 + 1.33333 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 3152 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 200-43 chr8 62102696 62103031 + 1.33333 NA Intergenic L1PA16|LINE|L1 -145991 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 230-32 chr4 88894967 88895281 + 1.33333 NA intron (NM_014883, intron 6 of 23) MIRb|SINE|MIR -71763 NM_001015045 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 202-13 chr17 57515941 57516140 + 1.33333 NA intron (NM_001322250, intron 6 of 13) L1MD2|LINE|L1 7557 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 168.833-15 chr21 29298737 29298952 + 1.33333 NA promoter-TSS (NM_001186) promoter-TSS (NM_001186) -78 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 245.333-3 chr1 245217955 245218265 + 1.33333 NA intron (NR_151721, intron 2 of 4) intron (NR_151721, intron 2 of 4) 16407 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 362.499 chr5 149439262 149439827 + 1.33333 NA Intergenic AluSx|SINE|Alu 8898 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 171.167-34 chr6 34215321 34215560 + 1.33333 NA Intergenic L1MD|LINE|L1 -21433 NM_001319079 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 253.666 chr15 98046085 98046310 + 1.33333 NA Intergenic ERVL-B4-int|LTR|ERVL 42556 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 221.333-7 chr16 62196767 62197485 + 1.33333 NA Intergenic MIRc|SINE|MIR -160688 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 226.833-10 chr2 72775619 72775937 + 1.33333 NA intron (NR_135774, intron 1 of 19) L1MD2|LINE|L1 50255 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 246.667-7 chr16 22981543 22981847 + 1.33333 NA Intergenic Intergenic 167533 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 374.166-2 chr5 55227229 55227588 + 1.33333 NA promoter-TSS (NM_001190787) promoter-TSS (NM_001190787) -93 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 216.833-8 chr14 44958903 44959112 + 1.33333 NA intron (NM_017658, intron 1 of 4) intron (NM_017658, intron 1 of 4) 2478 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 240-29 chr2 24807142 24807437 + 1.33333 NA intron (NM_001322101, intron 3 of 7) L1ME3|LINE|L1 13864 NM_001322101 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 188.5-12 chr11 122203088 122203334 + 1.33333 NA promoter-TSS (NR_137182) promoter-TSS (NR_137182) -102 NR_024430 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 566.666 chr3 181326256 181327237 + 1.33333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 95009 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 286.833-9 chr5 68432094 68432415 + 1.33333 NA Intergenic L1MB1|LINE|L1 139677 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 270.666-10 chr3 116836181 116836402 + 1.33333 NA Intergenic MER112|DNA|hAT-Charlie 14076 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 188.333-24 chr2 146031037 146031262 + 1.33333 NA Intergenic Tigger7|DNA|TcMar-Tigger -555908 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 271.333-11 chr15 61040651 61040901 + 1.33333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 188526 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 284.5-10 chr17 4420655 4421018 + 1.33333 NA Intergenic Intergenic -13104 NM_001320449 201305 Hs.657543 NM_182538 ENSG00000182557 SPNS3 SLC62A3 sphingolipid transporter 3 (putative) protein-coding 194.166 chr12 40135596 40135807 + 1.33333 NA Intergenic Intergenic -20538 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 271-26 chr6 70289831 70290242 + 1.33333 NA intron (NM_001851, intron 5 of 37) intron (NM_001851, intron 5 of 37) -6839 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 413.666-3 chr4 118223970 118224781 + 1.33333 NA intron (NM_004784, intron 6 of 13) intron (NM_004784, intron 6 of 13) -54387 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 359.166-2 chr20 43391527 43391936 + 1.33333 NA Intergenic L1M5|LINE|L1 -66165 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 182.333-23 chr5 80187195 80187478 + 1.33333 NA intron (NR_126061, intron 2 of 13) intron (NR_126061, intron 2 of 13) 68712 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 443.333 chrX 131638494 131639013 + 1.33333 NA Intergenic Intergenic 94679 NM_001004486 347468 Hs.553711 NM_001004486 ENSG00000171054 OR13H1 ORX1 olfactory receptor family 13 subfamily H member 1 protein-coding 264-5 chr10 54572096 54572474 + 1.33333 NA intron (NR_134503, intron 2 of 5) intron (NR_134503, intron 2 of 5) 35672 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 267.333-2 chr1 171984815 171985105 + 1.33333 NA intron (NM_001278252, intron 2 of 14) intron (NM_001278252, intron 2 of 14) 120768 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 173.667-11 chr11 95231292 95231447 + 1.33333 NA promoter-TSS (NM_144665) promoter-TSS (NM_144665) -167 NM_144665 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 381-7 chr17 67360101 67360675 + 1.33333 NA intron (NM_002816, intron 1 of 10) intron (NM_002816, intron 1 of 10) 6189 NM_001316341 5718 Hs.4295 NM_002816 ENSG00000197170 PSMD12 Rpn5|STISS|p55 proteasome 26S subunit, non-ATPase 12 protein-coding 215.833-11 chr17 42489473 42489780 + 1.33333 NA intron (NM_005177, intron 10 of 20) intron (NM_005177, intron 10 of 20) -5147 NR_049845 100847030 NR_049845 ENSG00000264314 MIR548AT - microRNA 548at ncRNA 273-7 chr11 102026242 102026773 + 1.33333 NA Intergenic Intergenic -20930 NM_032930 85016 Hs.98328 NM_032930 ENSG00000137691 CFAP300 C11orf70|CILD38 cilia and flagella associated protein 300 protein-coding 387.667-9 chr9 98998850 98999491 + 1.33333 NA intron (NM_001855, intron 6 of 41) intron (NM_001855, intron 6 of 41) 55263 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 239.333-11 chr17 68399629 68400177 + 1.33333 NA intron (NM_001352899, intron 10 of 12) intron (NM_001352899, intron 10 of 12) -13720 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 348-6 chr2 47780647 47780972 + 1.33333 NA Intergenic AluJb|SINE|Alu -2273 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 242.333-2 chr1 173548403 173548658 + 1.33333 NA exon (NM_178527, exon 12 of 28) exon (NM_178527, exon 12 of 28) 54542 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 210-23 chr2 169704344 169704648 + 1.33333 NA intron (NR_144936, intron 3 of 4) MLT1E1A|LTR|ERVL-MaLR 10027 NM_001199290 100526832 NM_001199290 ENSG00000213160 PHOSPHO2-KLHL23 - PHOSPHO2-KLHL23 readthrough protein-coding 296.666-9 chr5 10145794 10146094 + 1.33333 NA Intergenic Intergenic 103944 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 175.5-8 chr10 65711231 65711498 + 1.33333 NA intron (NR_120647, intron 4 of 5) MLT1I|LTR|ERVL-MaLR 139939 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 550.332 chr8 119229573 119230256 + 1.33333 NA intron (NR_149114, intron 3 of 5) ERV3-16A3_I-int|LTR|ERVL 16943 NR_149114 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 209-7 chr11 8394900 8395118 + 1.33333 NA intron (NM_001352399, intron 11 of 11) L1ME4b|LINE|L1 -126222 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 248.666-3 chr16 30948105 30948364 + 1.33333 NA promoter-TSS (NM_152288) promoter-TSS (NM_152288) -834 NM_152288 93129 Hs.745104 NM_152288 ENSG00000175938 ORAI3 TMEM142C ORAI calcium release-activated calcium modulator 3 protein-coding 253.333-14 chr2 119018681 119018968 + 1.33333 NA Intergenic Intergenic 76655 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 290.333-14 chr20 49550290 49550685 + 1.33333 NA intron (NM_000961, intron 1 of 9) MER4C|LTR|ERV1 17650 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 222-11 chr12 21505856 21506215 + 1.33333 NA intron (NM_016072, intron 1 of 4) intron (NM_016072, intron 1 of 4) 4246 NM_016072 51026 Hs.62275 NM_016072 ENSG00000111711 GOLT1B CGI-141|GCT2|GOT1|GOT1B|YMR292W golgi transport 1B protein-coding 324.5-4 chr17 82003653 82004066 + 1.33333 NA intron (NR_045351, intron 6 of 14) intron (NR_045351, intron 6 of 14) 19019 NM_001271006 201254 Hs.37616 NM_144998 ENSG00000169689 CENPX CENP-X|D9|FAAP10|MHF2|STRA13 centromere protein X protein-coding 238-6 chr12 39016431 39016691 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -110970 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 302.333-17 chr9 74645261 74645620 + 1.33333 NA intron (NM_006914, intron 4 of 9) MIR|SINE|MIR 29906 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 171.333-48 chr6 105514247 105514658 + 1.33333 NA Intergenic Intergenic -111370 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 214-42 chr4 142461416 142461786 + 1.33333 NA intron (NM_001331040, intron 3 of 25) intron (NM_001331040, intron 3 of 25) 384934 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 185.667-30 chr20 57243591 57243820 + 1.33333 NA intron (NM_001719, intron 1 of 6) intron (NM_001719, intron 1 of 6) 22936 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 225.667-37 chr8 104586248 104586426 + 1.33333 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 2687 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 240-11 chr12 54755917 54756125 + 1.33333 NA Intergenic L1MA4|LINE|L1 -98495 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 295.166-4 chr8 79636598 79637009 + 1.33333 NA exon (NM_001199214, exon 2 of 6) exon (NM_001199214, exon 2 of 6) 25686 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 249.999 chr1 114852843 114853082 + 1.33333 NA Intergenic MIR3|SINE|MIR -1841 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 265-14 chr3 24864267 24864493 + 1.33333 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 35057 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 177.5-7 chr11 32783502 32783887 + 1.33333 NA intron (NM_001008391, intron 1 of 17) MLT1A0|LTR|ERVL-MaLR 10964 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 333.334-4 chr14 57947755 57948154 + 1.33333 NA Intergenic L1PBa|LINE|L1 -81862 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 266.666-9 chr2 194273637 194273948 + 1.33333 NA Intergenic Intergenic -70477 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 308.666-2 chr14 73727766 73728058 + 1.33333 NA intron (NM_001367710, intron 4 of 12) intron (NM_001367710, intron 4 of 12) -13528 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 406.999 chr6 63553980 63554376 + 1.33333 NA Intergenic Intergenic -17834 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 228-33 chr4 103915336 103915638 + 1.33333 NA Intergenic (AAAAC)n|Simple_repeat|Simple_repeat -195502 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 242.166-2 chr10 53528702 53528936 + 1.33333 NA Intergenic L1ME1|LINE|L1 -757119 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 473.667-3 chr8 99169222 99170106 + 1.33333 NA intron (NM_017890, intron 15 of 61) intron (NM_017890, intron 15 of 61) 156398 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 332-27 chr8 109244928 109245510 + 1.33333 NA intron (NM_032869, intron 9 of 9) intron (NM_032869, intron 9 of 9) 84714 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 263.333-13 chr2 110970342 110970659 + 1.33333 NA intron (NM_001371254, intron 13 of 18) L1MDb|LINE|L1 145088 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 228.833-8 chr17 61269304 61269595 + 1.33333 NA intron (NM_001330413, intron 23 of 25) L1MB2|LINE|L1 98255 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 266.5-28 chr8 118416170 118416422 + 1.33333 NA intron (NM_001349811, intron 3 of 4) (TATTAC)n|Simple_repeat|Simple_repeat -204705 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 232.166 chr2 140952638 140952870 + 1.33333 NA intron (NM_018557, intron 18 of 90) intron (NM_018557, intron 18 of 90) -366069 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 217.5-11 chr2 105081408 105081778 + 1.33333 NA intron (NM_182640, intron 5 of 10) intron (NM_182640, intron 5 of 10) 21351 NR_110227 101927492 Hs.469537 NR_110227 ENSG00000231851 UTAT33 - uncharacterized LOC101927492 ncRNA 233.333-7 chr12 73514423 73514828 + 1.33333 NA Intergenic L1M2a|LINE|L1 355435 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 475.166-2 chr22 41946531 41947308 + 1.33333 NA promoter-TSS (NM_001304370) promoter-TSS (NM_001304370) -165 NM_001304370 79019 Hs.208912 NM_024053 ENSG00000100162 CENPM C22orf18|CENP-M|PANE1 centromere protein M protein-coding 171.333-51 chr8 15074995 15075205 + 1.33333 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 163331 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 180.667-35 chr4 152967539 152967780 + 1.33333 NA intron (NM_001371116, intron 9 of 11) intron (NM_001371116, intron 9 of 11) 24676 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 199.333-42 chr6 124670125 124670314 + 1.33333 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -292326 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 310-13 chr16 13780739 13781071 + 1.33333 NA Intergenic Intergenic -139252 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 187.5-33 chr5 177497643 177497838 + 1.33333 NA promoter-TSS (NM_213636) promoter-TSS (NM_213636) -135 NM_213636 9260 Hs.533040 NM_005451 ENSG00000196923 PDLIM7 LMP1|LMP3 PDZ and LIM domain 7 protein-coding 170.833-33 chr6 142902803 142902980 + 1.33333 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 42285 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 194.333-28 chr3 179586793 179587349 + 1.33333 NA intron (NM_004301, intron 13 of 13) intron (NM_004301, intron 13 of 13) 17567 NM_020409 57129 Hs.283734 NM_020409 ENSG00000136522 MRPL47 CGI-204|L47mt|MRP-L47|NCM1 mitochondrial ribosomal protein L47 protein-coding 324.666-7 chr9 107376086 107376451 + 1.33333 NA Intergenic Intergenic 90317 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 192.5-31 chr3 83522012 83522296 + 1.33333 NA Intergenic Intergenic 1347421 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 314.166 chr14 64041983 64042369 + 1.33333 NA intron (NM_015180, intron 45 of 114) L1ME3Cz|LINE|L1 52949 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 186-39 chr7 18029699 18029899 + 1.33333 NA Intergenic Intergenic -1953 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 180-5 chr10 60401536 60401685 + 1.33333 NA intron (NM_001204403, intron 2 of 43) L1ME4a|LINE|L1 -11735 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 330.166-2 chr10 66874586 66875127 + 1.33333 NA intron (NM_001127384, intron 7 of 17) L2a|LINE|L2 -51180 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 345.499 chr10 123014698 123014957 + 1.33333 NA intron (NM_001609, intron 1 of 10) L2c|LINE|L2 5821 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 303-5 chr11 73761157 73761704 + 1.33333 NA promoter-TSS (NM_001243718) promoter-TSS (NM_001243718) -356 NM_001243718 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 256-7 chr12 100730143 100730530 + 1.33333 NA Intergenic MIRb|SINE|MIR -64440 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 300.5-25 chr8 140829601 140830010 + 1.33333 NA intron (NR_148037, intron 9 of 34) MIRb|SINE|MIR -97152 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 193.333-13 chr12 92594056 92594373 + 1.33333 NA Intergenic L2c|LINE|L2 -108629 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 279.833-19 chr9 27935375 27935666 + 1.33333 NA Intergenic Intergenic -361654 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 213-31 chr5 67589079 67589282 + 1.33333 NA Intergenic Intergenic 57609 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 390.333-6 chr4 89285927 89286463 + 1.33333 NA intron (NM_198281, intron 1 of 1) intron (NM_198281, intron 1 of 1) 21605 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 303.166-5 chr3 38346699 38347037 + 1.33333 NA promoter-TSS (NM_005108) promoter-TSS (NM_005108) 83 NM_001349178 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 244-14 chr2 84069509 84070017 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -220919 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 385-2 chr14 56716093 56716608 + 1.33333 NA Intergenic Intergenic 89317 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 243.833-19 chr4 137650159 137650469 + 1.33333 NA Intergenic L1MC4|LINE|L1 104583 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 285.5-8 chr14 24108994 24109341 + 1.33333 NA intron (NM_006177, intron 1 of 3).2 intron (NM_006177, intron 1 of 3).2 -5530 NM_001163484 80344 Hs.525251 NM_025230 ENSG00000100897 DCAF11 GL014|PRO2389|WDR23 DDB1 and CUL4 associated factor 11 protein-coding 340-8 chr19 12775385 12775969 + 1.33333 NA promoter-TSS (NM_001100176) promoter-TSS (NM_001100176) -125 NM_013312 29911 Hs.30792 NM_013312 ENSG00000095066 HOOK2 HK2 hook microtubule tethering protein 2 protein-coding 203.666 chr10 100263502 100263695 + 1.33333 NA intron (NM_001303404, intron 1 of 12) L2a|LINE|L2 4040 NM_018294 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19 like cell cycle control factor 1 protein-coding 198.833-6 chr11 11621995 11622290 + 1.33333 NA promoter-TSS (NM_198516) promoter-TSS (NM_198516) -137 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 262.667-31 chr7 73717728 73718067 + 1.33333 NA intron (NM_001165903, intron 1 of 9) intron (NM_001165903, intron 1 of 9) 1772 NM_004603 6804 Hs.647024 NM_004603 ENSG00000106089 STX1A HPC-1|P35-1|STX1|SYN1A syntaxin 1A protein-coding 247-15 chr15 77870372 77870704 + 1.33333 NA Intergenic Intergenic -49638 NM_001301186 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 445.001-4 chr5 84232514 84232991 + 1.33333 NA intron (NM_005711, intron 2 of 10) intron (NM_005711, intron 2 of 10) 152115 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 265.999-4 chr19 38134739 38134965 + 1.33333 NA intron (NM_015073, intron 10 of 21) intron (NM_015073, intron 10 of 21) -28244 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 327-18 chr8 103374100 103374381 + 1.33333 NA intron (NM_001256099, intron 1 of 3) intron (NM_001256099, intron 1 of 3) 1733 NM_001256099 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 192.666 chr10 57129445 57129677 + 1.33333 NA Intergenic Intergenic 174998 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 245.666-5 chr15 72576734 72577017 + 1.33333 NA intron (NM_005744, intron 11 of 13) Tigger2|DNA|TcMar-Tigger -10342 NR_030359 693215 NR_030359 ENSG00000283798 MIR630 MIRN630|hsa-mir-630 microRNA 630 ncRNA 353 chr1 41603641 41604169 + 1.33333 NA intron (NM_024503, intron 3 of 8) L1M3|LINE|L1 -119222 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 168.333-7 chr1 217295372 217295561 + 1.33333 NA Intergenic Intergenic -157764 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 306-3 chr11 10672049 10672416 + 1.33333 NA intron (NM_130385, intron 1 of 20) L1MB7|LINE|L1 -19931 NM_001098579 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 334.167-8 chr5 148837541 148837819 + 1.33333 NA Intergenic L2b|LINE|L2 11087 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 218.666-16 chr9 76401773 76402026 + 1.33333 NA Intergenic AluJb|SINE|Alu 3300 NR_026890 653162 Hs.655646 NR_026890 RPSAP9 LAMR1P9|RPSA_20_986 ribosomal protein SA pseudogene 9 pseudo 582.834-2 chr2 225063697 225064504 + 1.33333 NA Intergenic Intergenic -21632 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 271.5-19 chr2 119085398 119085769 + 1.33333 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat 73168 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 312.666-9 chr5 131636834 131637131 + 1.33333 NA Intergenic MIRb|SINE|MIR -1753 NM_001164387 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 283.5-9 chr2 135051773 135052191 + 1.33333 NA promoter-TSS (NM_012233) promoter-TSS (NM_012233) -310 NM_012233 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 300.666-4 chr6 66906043 66906418 + 1.33333 NA Intergenic Intergenic 1118351 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 184.333-33 chr5 157290280 157290666 + 1.33333 NA intron (NM_001291721, intron 3 of 29) MLT1D|LTR|ERVL-MaLR 21149 NM_014376 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 250-7 chr16 46848053 46848312 + 1.33333 NA Intergenic Intergenic -17002 NR_145834 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 244-28 chr5 102761715 102761970 + 1.33333 NA intron (NR_157231, intron 1 of 14) MamRep434|DNA|TcMar-Tigger 6537 NM_001364594 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 189-38 chr4 26319544 26319687 + 1.33333 NA promoter-TSS (NM_203283) promoter-TSS (NM_203283) -95 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 260.333-23 chrX 80579303 80579652 + 1.33333 NA Intergenic L1MA3|LINE|L1 159030 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 273.5-4 chr11 74508057 74508384 + 1.33333 NA Intergenic Intergenic -14496 NM_001329942 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 328-10 chr3 41937993 41938379 + 1.33333 NA exon (NM_001322500, exon 3 of 36) exon (NM_001322500, exon 3 of 36) 23917 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 347-16 chr2 108052473 108052961 + 1.33333 NA promoter-TSS (NR_135071) promoter-TSS (NR_135071) 38 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 173.833 chr1 32760178 32760394 + 1.33333 NA intron (NM_001369553, intron 1 of 6) intron (NM_001369553, intron 1 of 6) -5341 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 266.5-25 chr8 90116373 90116774 + 1.33333 NA Intergenic Intergenic -33694 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 171.833-34 chr9 127131032 127131231 + 1.33333 NA intron (NM_001190729, intron 8 of 17) intron (NM_001190729, intron 8 of 17) -8496 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 250.333-20 chr7 86821322 86821659 + 1.33333 NA intron (NM_001363522, intron 3 of 4) MIR|SINE|MIR 144409 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 292.166-7 chr8 68003337 68003733 + 1.33333 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 51489 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 227.333-40 chr8 142986861 142987384 + 1.33333 NA intron (NR_026913, intron 1 of 1) L1M5|LINE|L1 -8706 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 195.333-2 chr1 223189996 223190176 + 1.33333 NA Intergenic Intergenic -46838 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 332.833-7 chr15 33132449 33132901 + 1.33333 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 62039 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 256.666-9 chr8 124924908 124925212 + 1.33333 NA Intergenic Intergenic -16948 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 275-12 chr18 66314632 66315210 + 1.33333 NA Intergenic Intergenic 289169 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 361.834-4 chr6 36043358 36043866 + 1.33333 NA intron (NM_139012, intron 1 of 11) intron (NM_139012, intron 1 of 11) 15804 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 175-34 chr2 207718253 207718426 + 1.33333 NA intron (NM_001330218, intron 1 of 9) AluJb|SINE|Alu 6799 NM_001142300 151195 Hs.471234 NM_152523 ENSG00000163249 CCNYL1 - cyclin Y like 1 protein-coding 268.666-5 chr5 51246238 51246528 + 1.33333 NA Intergenic Intergenic 136949 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 188-39 chr5 15039705 15039869 + 1.33333 NA Intergenic L1MEd|LINE|L1 -168009 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 179-11 chr12 766055 766259 + 1.33333 NA intron (NM_001184985, intron 1 of 27) L1PA17|LINE|L1 13234 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 282.834-12 chr8 129088328 129088742 + 1.33333 NA Intergenic Intergenic -122534 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 270.999 chr2 74554472 74554681 + 1.33333 NA promoter-TSS (NM_001289164) promoter-TSS (NM_001289164) 416 NM_001318869 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 261.333-17 chr6 44827549 44827923 + 1.33333 NA 3' UTR (NM_001350324, exon 12 of 12) 3' UTR (NM_001350324, exon 12 of 12) -275855 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 248.833-2 chr1 66083678 66083876 + 1.33333 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -33059 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 287.999-4 chr5 68554336 68554731 + 1.33333 NA Intergenic L1MD1|LINE|L1 261956 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 364.666-5 chr21 41069300 41069838 + 1.33333 NA Intergenic AluSx1|SINE|Alu 78495 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 179.333-44 chr6 119270322 119270536 + 1.33333 NA intron (NM_005907, intron 5 of 12) L1MB8|LINE|L1 79332 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 280.333-24 chr7 48824348 48824809 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -99969 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 329.5-6 chr14 72002509 72002857 + 1.33333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 69156 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 214.833-21 chr8 58759132 58759567 + 1.33333 NA Intergenic Intergenic -99496 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 344-15 chr5 37186339 37186729 + 1.33333 NA intron (NM_023073, intron 23 of 51) Tigger13a|DNA|TcMar-Tigger -62512 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 224.666-4 chr2 82869843 82870043 + 1.33333 NA Intergenic THE1D-int|LTR|ERVL-MaLR 13140 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 289-15 chr20 45010898 45011502 + 1.33333 NA intron (NM_001352385, intron 9 of 11) intron (NM_001352385, intron 9 of 11) 44688 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 256.166-2 chr15 79134714 79135052 + 1.33333 NA Intergenic MER67C|LTR|ERV1 -44103 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 243.5-15 chr2 131056922 131057253 + 1.33333 NA intron (NM_001321746, intron 3 of 6) intron (NM_001321746, intron 3 of 6) 36075 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 464.833 chr16 71479106 71479693 + 1.33333 NA intron (NM_006961, intron 3 of 5) intron (NM_006961, intron 3 of 5) 9925 NM_006961 7567 Hs.660076 NM_006961 ENSG00000157429 ZNF19 KOX12 zinc finger protein 19 protein-coding 235-12 chr16 76951928 76952208 + 1.33333 NA Intergenic HAL1|LINE|L1 83132 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 345-22 chr5 98929225 98930017 + 1.33333 NA promoter-TSS (NR_157078) promoter-TSS (NR_157078) 93 NR_157078 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 529.5-2 chr3 120561108 120561766 + 1.33333 NA Intergenic Intergenic -34899 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 176.833-26 chr3 66938848 66939091 + 1.33333 NA Intergenic Intergenic -59338 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 350.666-4 chr5 123406817 123407241 + 1.33333 NA intron (NM_153223, intron 5 of 20) L1MC1|LINE|L1 16563 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 191.666-10 chr3 99026022 99026222 + 1.33333 NA Intergenic Intergenic -124427 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 225.167-13 chr17 61545262 61545606 + 1.33333 NA Intergenic L1MC1|LINE|L1 45785 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 202.333-25 chr3 21808781 21809163 + 1.33333 NA Intergenic L1MDb|LINE|L1 -57762 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 270.333-6 chr14 68372953 68373231 + 1.33333 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 255695 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 178.833-39 chr7 108664330 108664722 + 1.33333 NA Intergenic Intergenic 94652 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 434.832 chr7 5591324 5591684 + 1.33333 NA Intergenic Intergenic -1312 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 335-7 chr2 12307971 12308367 + 1.33333 NA intron (NR_110196, intron 3 of 5) L1M7|LINE|L1 109039 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 265.5-2 chr1 103505690 103505957 + 1.33333 NA intron (NM_001347929, intron 1 of 5) intron (NM_001347929, intron 1 of 5) 19688 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 272.833-11 chr21 16972223 16972442 + 1.33333 NA Intergenic MSTB1|LTR|ERVL-MaLR 382095 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 252.666 chr1 107197092 107197355 + 1.33333 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 49154 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 196-18 chr19 55295821 55296140 + 1.33333 NA intron (NM_032430, intron 7 of 18) intron (NM_032430, intron 7 of 18) 11983 NM_032430 84446 Hs.182081 NM_032430 ENSG00000160469 BRSK1 hSAD1 BR serine/threonine kinase 1 protein-coding 244.666-14 chr9 104344568 104344883 + 1.33333 NA Intergenic Intergenic 74496 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 217-19 chr20 45851548 45851771 + 1.33333 NA intron (NM_005469, intron 2 of 5) MIRb|SINE|MIR 5733 NM_005469 10005 Hs.444776 NM_005469 ENSG00000101473 ACOT8 HNAACTE|NAP1|PTE-1|PTE-2|PTE1|PTE2|hACTE-III|hTE acyl-CoA thioesterase 8 protein-coding 337.833-6 chr2 60802954 60803300 + 1.33333 NA Intergenic AluSg7|SINE|Alu 46859 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 190-10 chr11 17535622 17535877 + 1.33333 NA intron (NR_123738, intron 1 of 19) MIRb|SINE|MIR 8667 NM_001297764 10083 Hs.502072 NM_005709 ENSG00000006611 USH1C AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst USH1 protein network component harmonin protein-coding 671.667 chr1 30718759 30719875 + 1.33333 NA non-coding (NR_034182, exon 1 of 4) non-coding (NR_034182, exon 1 of 4) 545 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 255.666-6 chr7 20530798 20531155 + 1.33333 NA Intergenic Intergenic -84691 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 233.334-12 chrX 134423220 134423852 + 1.33333 NA intron (NM_032458, intron 9 of 9) intron (NM_032458, intron 9 of 9) -36629 NM_000194 3251 Hs.412707 NM_000194 ENSG00000165704 HPRT1 HGPRT|HPRT hypoxanthine phosphoribosyltransferase 1 protein-coding 210.333 chr1 18554465 18554776 + 1.33333 NA Intergenic Intergenic 73690 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 411.666-2 chr12 102484640 102485254 + 1.33333 NA Intergenic L2a|LINE|L2 -4384 NM_001111283 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 265.333-5 chr16 48159912 48160227 + 1.33333 NA Intergenic Intergenic -13299 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 203-25 chr4 33163521 33163729 + 1.33333 NA Intergenic Intergenic 812587 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 244.333-31 chr6 290929 291144 + 1.33333 NA Intergenic L2b|LINE|L2 -1021 NR_104473 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 311-7 chr17 53897790 53898162 + 1.33333 NA Intergenic Intergenic 75049 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 329.666-8 chr5 170423311 170423621 + 1.33333 NA TTS (NR_109899) TTS (NR_109899) 33973 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 210.833-11 chr15 60093142 60093529 + 1.33333 NA Intergenic Intergenic 89024 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 241.5-3 chr1 186318798 186319059 + 1.33333 NA intron (NM_003292, intron 46 of 50) intron (NM_003292, intron 46 of 50) 22655 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 322.5-8 chr15 89807060 89807345 + 1.33333 NA intron (NM_001150, intron 1 of 20) intron (NM_001150, intron 1 of 20) 7650 NM_001150 290 Hs.1239 NM_001150 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl aminopeptidase, membrane protein-coding 260.667-25 chr2 50469481 50469813 + 1.33333 NA intron (NM_001330093, intron 16 of 22) intron (NM_001330093, intron 16 of 22) -121891 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 167.333-12 chr11 47551308 47551690 + 1.33333 NA intron (NM_006560, intron 1 of 13) intron (NM_006560, intron 1 of 13) 1633 NM_006560 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 338.666 chr14 33820268 33820743 + 1.33333 NA Intergenic MamRep605|LTR?|LTR? 111568 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 284.666-6 chr3 157150081 157150322 + 1.33333 NA intron (NM_001308185, intron 6 of 10) intron (NM_001308185, intron 6 of 10) 10559 NM_001308185 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 246.999 chr5 8310186 8310464 + 1.33333 NA Intergenic L1M1|LINE|L1 147239 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 266.666-3 chr11 36226174 36226406 + 1.33333 NA intron (NM_001304264, intron 4 of 5) MIR|SINE|MIR 63134 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 222-7 chr10 28679990 28680252 + 1.33333 NA intron (NM_012342, intron 1 of 2) intron (NM_012342, intron 1 of 2) 2600 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 180.333-8 chr10 124362122 124362461 + 1.33333 NA Intergenic AluSx|SINE|Alu 56632 NM_001322971 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 521.666 chr12 94545948 94546631 + 1.33333 NA Intergenic Intergenic -15500 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 240.666-11 chr6 134550741 134550987 + 1.33333 NA Intergenic Intergenic -10859 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 242-19 chr2 196205598 196206182 + 1.33333 NA intron (NM_020760, intron 28 of 28) MIR|SINE|MIR -34312 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 287.999-3 chr17 42101768 42102076 + 1.33333 NA exon (NM_024119, exon 14 of 14) exon (NM_024119, exon 14 of 14) 10792 NM_024119 79132 Hs.55918 NM_024119 ENSG00000108771 DHX58 D11LGP2|D11lgp2e|LGP2|RLR-3 DExH-box helicase 58 protein-coding 390.5-4 chr14 29529365 29529852 + 1.33333 NA Intergenic Intergenic 397488 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 332.333-13 chr7 42849450 42849802 + 1.33333 NA Intergenic L1MA9|LINE|L1 62217 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 194.833-20 chr4 73428381 73428662 + 1.33333 NA Intergenic Intergenic -7700 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 334.667-6 chr17 60368269 60368666 + 1.33333 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 23666 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 269.666 chr11 81350547 81350947 + 1.33333 NA Intergenic Intergenic 540089 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 185.666-5 chr5 122078460 122078782 + 1.33333 NA promoter-TSS (NM_002317) promoter-TSS (NM_002317) -362 NM_002317 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 237.166-2 chr1 85260489 85260730 + 1.33333 NA promoter-TSS (NM_198077) promoter-TSS (NM_198077) -947 NR_024113 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 208.666-3 chr10 97972446 97972638 + 1.33333 NA intron (NM_001206528, intron 2 of 14) MER54B|LTR|ERVL 58079 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 348-4 chr11 101924769 101925251 + 1.33333 NA intron (NM_001363543, intron 2 of 11) intron (NM_001363543, intron 2 of 11) -8488 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 217.333-32 chr5 99385679 99385965 + 1.33333 NA Intergenic MER5A1|DNA|hAT-Charlie -148168 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 302-23 chr9 4377768 4378037 + 1.33333 NA Intergenic Intergenic -77834 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 466.166-2 chr4 58612581 58613140 + 1.33333 NA Intergenic Intergenic -76532 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 330.333-5 chr3 183467040 183467536 + 1.33333 NA Intergenic Intergenic 13474 NR_145763 109617007 NR_145763 ENSG00000199363 SNORA63E - small nucleolar RNA, H/ACA box 63E snoRNA 225.333 chr1 94417344 94417591 + 1.33333 NA promoter-TSS (NM_001122674) promoter-TSS (NM_001122674) -910 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 375.001-2 chr6 53545088 53545405 + 1.33333 NA promoter-TSS (NM_001197115) promoter-TSS (NM_001197115) -145 NM_001498 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 468.833-4 chr3 113494854 113495627 + 1.33333 NA intron (NM_001331078, intron 4 of 17) intron (NM_001331078, intron 4 of 17) 19604 NM_001331079 152185 Hs.477144 NM_144718 ENSG00000163611 SPICE1 CCDC52|SPICE spindle and centriole associated protein 1 protein-coding 307.5-9 chr12 104986466 104986905 + 1.33333 NA intron (NM_152318, intron 1 of 3) intron (NM_152318, intron 1 of 3) 369 NM_152318 121053 Hs.295563 NM_152318 ENSG00000151131 C12orf45 - chromosome 12 open reading frame 45 protein-coding 192-40 chr7 83916959 83917172 + 1.33333 NA Intergenic Intergenic -267926 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 215.666-6 chr8 120922068 120922333 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -110154 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 311.666 chr10 18530296 18530590 + 1.33333 NA intron (NM_201593, intron 10 of 13) L2a|LINE|L2 121144 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 194.833 chr10 35154413 35154902 + 1.33333 NA intron (NM_001352467, intron 2 of 3) intron (NM_001352467, intron 2 of 3) -12882 NM_001267565 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 363.5-3 chr12 115415937 115416440 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -732013 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 177-44 chr8 92487965 92488199 + 1.33333 NA Intergenic Intergenic 167412 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 205.667-9 chr12 21112422 21112701 + 1.33333 NA Intergenic L1MA3|LINE|L1 -18633 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 200.667-48 chr6 168011074 168011282 + 1.33333 NA Intergenic L1M2c|LINE|L1 -6695 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 242.333-7 chr14 52869576 52870002 + 1.33333 NA intron (NM_006832, intron 10 of 14) Tigger3b|DNA|TcMar-Tigger -78182 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 381.5-4 chr17 9744689 9745329 + 1.33333 NA Intergenic LTR41|LTR|ERVL 46583 NM_001220493 201140 Hs.61684 NM_001105571 ENSG00000184544 DHRS7C SDR32C2 dehydrogenase/reductase 7C protein-coding 208.166-4 chr8 20382210 20382414 + 1.33333 NA Intergenic Intergenic -78349 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 307.333-9 chr4 145619415 145620005 + 1.33333 NA intron (NM_172250, intron 1 of 6) intron (NM_172250, intron 1 of 6) 325 NM_172250 166785 Hs.452864 NM_172250 ENSG00000151611 MMAA cblA metabolism of cobalamin associated A protein-coding 330.167-7 chr6 130293499 130294003 + 1.33333 NA intron (NM_001258275, intron 2 of 13) intron (NM_001258275, intron 2 of 13) -70800 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 243.333-2 chr1 67831060 67831338 + 1.33333 NA intron (NM_018841, intron 1 of 3) A-rich|Low_complexity|Low_complexity -1089 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 488.999-2 chr14 64556159 64556789 + 1.33333 NA intron (NM_172365, intron 3 of 11) intron (NM_172365, intron 3 of 11) 6513 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 366.334 chr1 10867237 10867702 + 1.33333 NA Intergenic Intergenic -70823 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 498.168 chr3 132256942 132257516 + 1.33333 NA Intergenic L2b|LINE|L2 -60178 NM_001292037 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 259.166-2 chr11 27204983 27205347 + 1.33333 NA intron (NR_125767, intron 2 of 4) L1ME4a|LINE|L1 13603 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 248.667-34 chr7 24701375 24701703 + 1.33333 NA intron (NM_004403, intron 9 of 9) intron (NM_004403, intron 9 of 9) 55925 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 169.667-44 chr4 162778304 162778662 + 1.33333 NA Intergenic Intergenic 315145 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 382.999-2 chr4 160345701 160346087 + 1.33333 NA Intergenic Intergenic -568110 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 334.667-13 chr5 127917856 127918445 + 1.33333 NA intron (NM_001317938, intron 6 of 6) AluJb|SINE|Alu 165025 NR_152814 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 374.333 chr17 47668463 47668844 + 1.33333 NA intron (NM_002265, intron 10 of 21) L1ME4a|LINE|L1 17588 NM_001276453 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 217.667-9 chr11 10488396 10488882 + 1.33333 NA intron (NM_001025389, intron 6 of 14) intron (NM_001025389, intron 6 of 14) 19687 NR_039705 100616263 NR_039705 ENSG00000283813 MIR4485 mir-4485 microRNA 4485 ncRNA 196.333-44 chr6 166654797 166655117 + 1.33333 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -27706 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 301.166-8 chr6 162625759 162626123 + 1.33333 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -101191 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 171-36 chr2 240010634 240010774 + 1.33333 NA intron (NR_136157, intron 4 of 7) intron (NR_136157, intron 4 of 7) 14638 NM_004544 4705 Hs.277677 NM_004544 ENSG00000130414 NDUFA10 CI-42KD|CI-42k|MC1DN22 NADH:ubiquinone oxidoreductase subunit A10 protein-coding 546.501-2 chr19 50663170 50663835 + 1.33333 NA intron (NM_016148, intron 23 of 23) L2a|LINE|L2 14057 NM_001195076 342918 Hs.531650 NM_001195076 ENSG00000235034 C19orf81 - chromosome 19 open reading frame 81 protein-coding 401.5-8 chr6 51399276 51399876 + 1.33333 NA Intergenic MIR|SINE|MIR -222294 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 266.833-20 chr5 80786239 80786607 + 1.33333 NA intron (NM_002439, intron 17 of 23) intron (NM_002439, intron 17 of 23) -131440 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 267.666-7 chr3 147816872 147817100 + 1.33333 NA Intergenic Intergenic -261173 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 372.5-10 chr3 33523735 33524225 + 1.33333 NA intron (NM_001365634, intron 31 of 35) L1MB3|LINE|L1 -83575 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 342.833-11 chr2 41400490 41400865 + 1.33333 NA Intergenic L3b|LINE|CR1 -476878 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 437.167-7 chrX 131802934 131803454 + 1.33333 NA intron (NR_026975, intron 3 of 12) intron (NR_026975, intron 3 of 12) 27449 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 273.999-2 chr4 57083088 57083429 + 1.33333 NA intron (NM_001553, intron 1 of 4) L1ME3G|LINE|L1 -26504 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 202-7 chr10 81268578 81268858 + 1.33333 NA Intergenic Intergenic -606476 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 207.333-8 chr11 82697877 82698089 + 1.33333 NA Intergenic L1M5|LINE|L1 35881 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 225.666-5 chr7 120198258 120198442 + 1.33333 NA Intergenic Intergenic -74825 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 176.833-29 chr4 113694882 113695050 + 1.33333 NA intron (NM_001321585, intron 2 of 19) intron (NM_001321585, intron 2 of 19) 66772 NM_001321567 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 248.166 chr3 61030689 61031117 + 1.33333 NA intron (NR_148922, intron 3 of 3) L2a|LINE|L2 220549 NM_001354589 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 214.333-3 chr1 201408168 201408643 + 1.33333 NA 3' UTR (NM_003281, exon 8 of 8) 3' UTR (NM_003281, exon 8 of 8) -9081 NM_005558 3898 Hs.519035 NM_005558 ENSG00000159166 LAD1 LadA ladinin 1 protein-coding 202.166-2 chr17 56292317 56292622 + 1.33333 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 138994 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 185.333-38 chr4 152506073 152506270 + 1.33333 NA intron (NM_001349798, intron 2 of 13) AluY|SINE|Alu -16755 NR_036092 100422896 NR_036092 ENSG00000264678 MIR3140 mir-3140 microRNA 3140 ncRNA 319.833-2 chr1 149884813 149885068 + 1.33333 NA 3' UTR (NM_003528, exon 1 of 1) 3' UTR (NM_003528, exon 1 of 1) 1742 NM_003528 8349 Hs.2178 NM_003528 ENSG00000184678 HIST2H2BE GL105|H2B|H2B.1|H2BFQ|H2BGL105|H2BQ histone cluster 2 H2B family member e protein-coding 277-20 chr3 37023901 37024311 + 1.33333 NA intron (NM_001167617, intron 11 of 18) (AT)n|Simple_repeat|Simple_repeat 30756 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 312-18 chr4 33307285 33307598 + 1.33333 NA Intergenic Intergenic 732452 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 248.667-36 chr8 3746765 3747130 + 1.33333 NA intron (NM_033225, intron 6 of 69) intron (NM_033225, intron 6 of 69) -1018496 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 295.333-23 chr8 133396043 133396407 + 1.33333 NA Intergenic Intergenic -98921 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 166-33 chr16 74623422 74623662 + 1.33333 NA 3' UTR (NM_018124, exon 13 of 13) 3' UTR (NM_018124, exon 13 of 13) -16428 NR_027265 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 191.666-6 chr16 72832827 72833001 + 1.33333 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) -167944 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 375-16 chrX 138191756 138192395 + 1.33333 NA Intergenic Intergenic 475718 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 243.333-16 chr12 103115240 103115606 + 1.33333 NA Intergenic Intergenic -36419 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 231.833-19 chr8 94079695 94079980 + 1.33333 NA Intergenic Intergenic 128718 NM_004063 1015 Hs.591853 NM_004063 ENSG00000079112 CDH17 CDH16|HPT-1|HPT1 cadherin 17 protein-coding 227-21 chr2 210061459 210061800 + 1.33333 NA intron (NM_001307976, intron 6 of 13) intron (NM_001307976, intron 6 of 13) 31707 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 231.666-4 chr16 53784545 53784940 + 1.33333 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 80586 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 215-39 chr7 88289680 88289934 + 1.33333 NA intron (NM_024636, intron 1 of 4) intron (NM_024636, intron 1 of 4) 17087 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 265.999-5 chr4 60487180 60487550 + 1.33333 NA Intergenic MLT2A1|LTR|ERVL -435254 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 275.334-10 chr6 132965292 132965622 + 1.33333 NA Intergenic Intergenic -122623 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 290-16 chr6 163907988 163908402 + 1.33333 NA Intergenic L2c|LINE|L2 -236711 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 188.666-2 chr10 93773529 93773715 + 1.33333 NA intron (NR_131777, intron 2 of 5) intron (NR_131777, intron 2 of 5) 15686 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 218.667-37 chr8 122568805 122569140 + 1.33333 NA promoter-TSS (NR_131202) promoter-TSS (NR_131202) -328 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 285.333-4 chr11 119101848 119102448 + 1.33333 NA promoter-TSS (NM_001382) promoter-TSS (NM_001382) -295 NM_001382 1798 Hs.524081 NM_001382 ENSG00000172269 DPAGT1 ALG7|CDG-Ij|CDG1J|CMS13|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 protein-coding 321.999 chr1 8769069 8769631 + 1.33333 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 48290 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 184-25 chr18 21219637 21219915 + 1.33333 NA Intergenic L1ME2z|LINE|L1 -22466 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 191.666-4 chr15 35862988 35863191 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -63767 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 198.333-21 chr17 73153182 73153435 + 1.33333 NA Intergenic Intergenic -11702 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 222.666-11 chr9 9604230 9604520 + 1.33333 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -195017 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 240-43 chr4 101015076 101015445 + 1.33333 NA Intergenic LTR40a|LTR|ERVL 225612 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 416.667-12 chr7 116576724 116577232 + 1.33333 NA intron (NR_120506, intron 2 of 4) MamGypLTR1b|LTR|Gypsy 37842 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 321.5-6 chr12 49676931 49677257 + 1.33333 NA intron (NM_001367835, intron 1 of 26) intron (NM_001367835, intron 1 of 26) 30311 NM_198900 91010 Hs.179838 NM_175736 ENSG00000161791 FMNL3 FHOD3|FRL2|WBP-3|WBP3 formin like 3 protein-coding 265.666-8 chr4 41862147 41862535 + 1.33333 NA Intergenic Intergenic 20270 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 310-24 chr6 14215274 14215629 + 1.33333 NA Intergenic Intergenic 70003 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 201.333-13 chr14 51638158 51638395 + 1.33333 NA intron (NM_001042481, intron 2 of 14) AluJr4|SINE|Alu 13468 NR_037676 145438 Hs.645410 NR_037676 ENSG00000273888 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 350.833-9 chr6 158946637 158947012 + 1.33333 NA Intergenic Intergenic 53363 NM_001346418 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 263.166-3 chr5 141045207 141045495 + 1.33333 NA TTS (NR_105056) TTS (NR_105056) -6025 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 693.334-2 chr9 132169567 132170331 + 1.33333 NA intron (NM_032536, intron 2 of 7) intron (NM_032536, intron 2 of 7) 7891 NM_032536 84628 Hs.163642 NM_032536 ENSG00000196358 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 239.333-31 chr7 50624882 50625100 + 1.33333 NA intron (NM_001350816, intron 7 of 17) intron (NM_001350816, intron 7 of 17) -59586 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 233.666 chr1 26186262 26186579 + 1.33333 NA intron (NM_006314, intron 14 of 20) AluJb|SINE|Alu -4208 NM_198137 378807 Hs.123532 NM_198137 ENSG00000188782 CATSPER4 - cation channel sperm associated 4 protein-coding 277.666-7 chr4 60967303 60967567 + 1.33333 NA Intergenic Intergenic 44816 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 250-12 chr2 77187976 77188395 + 1.33333 NA intron (NR_146416, intron 1 of 1) L2|LINE|L2 202220 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 235-8 chr11 110753171 110753542 + 1.33333 NA Intergenic L1PB2|LINE|L1 -40167 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 245.166-3 chr4 41143452 41143731 + 1.33333 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 70951 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 196-6 chr12 28441181 28441367 + 1.33333 NA intron (NM_001352082, intron 9 of 13) L1ME2z|LINE|L1 -250536 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 315.5-5 chr15 85505043 85505574 + 1.33333 NA intron (NM_007200, intron 2 of 36) intron (NM_007200, intron 2 of 36) -114642 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 199-57 chr8 135162088 135162271 + 1.33333 NA Intergenic Intergenic -71952 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 401.5-9 chr7 11211229 11211743 + 1.33333 NA Intergenic Intergenic 237614 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 308.499 chr20 46081204 46081485 + 1.33333 NA intron (NM_001348150, intron 1 of 8) intron (NM_001348150, intron 1 of 8) 8618 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 258.666-13 chr8 139020934 139021173 + 1.33333 NA Intergenic Intergenic -107012 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 283.167-9 chr2 103956942 103957493 + 1.33333 NA Intergenic Intergenic 451115 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 329.167-9 chr22 24207691 24208318 + 1.33333 NA Intergenic L1M5|LINE|L1 26517 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 311.5 chr1 112707186 112707748 + 1.33333 NA promoter-TSS (NM_175744) promoter-TSS (NM_175744) -64 NM_175744 389 Hs.502659 NM_175744 ENSG00000155366 RHOC ARH9|ARHC|H9|RHOH9 ras homolog family member C protein-coding 189.333-17 chr14 66468954 66469138 + 1.33333 NA Intergenic MER4-int|LTR|ERV1 -17325 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 165.166 chr11 76720128 76720325 + 1.33333 NA intron (NR_024042, intron 1 of 20) AluJr|SINE|Alu 1563 NR_024042 390226 Hs.440026 NR_024042 GUCY2EP GC-E|GCD|GUCY2E guanylate cyclase 2E, pseudogene pseudo 365.666-2 chr15 77218241 77218602 + 1.33333 NA intron (NM_024776, intron 4 of 7) L1ME1|LINE|L1 6983 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 248.333-7 chr10 57716835 57717112 + 1.33333 NA Intergenic Intergenic -412414 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 180.333-57 chr9 91277885 91278103 + 1.33333 NA intron (NM_001698, intron 6 of 9) intron (NM_001698, intron 6 of 9) 83930 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 187.666-3 chr7 84644313 84644503 + 1.33333 NA Intergenic Intergenic 111932 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 178.667-8 chr11 23897200 23897430 + 1.33333 NA Intergenic Intergenic -478125 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 230.333-4 chr10 72164425 72164868 + 1.33333 NA intron (NM_001369110, intron 5 of 8) L1MB5|LINE|L1 51310 NM_001369091 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 379.167-3 chr10 66538249 66538785 + 1.33333 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -387519 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 218.666-5 chr16 22196326 22196711 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -9760 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K CaMKIII|HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 277.166 chr14 76641316 76641572 + 1.33333 NA Intergenic Intergenic -120024 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 264.833-9 chr14 57316613 57316880 + 1.33333 NA Intergenic Intergenic 47775 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 198.333-33 chr4 70622740 70623028 + 1.33333 NA Intergenic (TTATA)n|Simple_repeat|Simple_repeat -5860 NM_031889 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 272.166-5 chr3 71676831 71677201 + 1.33333 NA 3' UTR (NM_001282886, exon 8 of 8) 3' UTR (NM_001282886, exon 8 of 8) 48386 NM_001134651 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 248.833-26 chr7 28405912 28406151 + 1.33333 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -6487 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 210.667-31 chr20 35263252 35263450 + 1.33333 NA intron (NM_006690, intron 4 of 8) L2b|LINE|L2 14771 NR_149147 101410538 Hs.356273 NM_001355003 ENSG00000126005 MMP24OS MMP24-AS1 MMP24 opposite strand protein-coding 248.999 chr1 40418426 40418626 + 1.33333 NA intron (NM_022733, intron 9 of 9) L1MC4|LINE|L1 21726 NM_001198980 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 181.666 chr14 70428571 70428830 + 1.33333 NA Intergenic L1PA14|LINE|L1 -11610 NM_018373 55333 Hs.443661 NM_018373 ENSG00000213463 SYNJ2BP ARIP2|OMP25 synaptojanin 2 binding protein protein-coding 391.833-2 chr14 55374197 55374702 + 1.33333 NA intron (NM_014924, intron 9 of 9) L1ME4b|LINE|L1 37409 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 310.667-15 chr4 122194267 122194726 + 1.33333 NA intron (NM_015312, intron 9 of 83) intron (NM_015312, intron 9 of 83) 23893 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 296.666-2 chr14 34025475 34026022 + 1.33333 NA Intergenic Intergenic -74674 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 249.833-8 chr17 59329695 59329975 + 1.33333 NA Intergenic Intergenic -1820 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 217.166 chr14 31715248 31715453 + 1.33333 NA intron (NM_001201574, intron 1 of 5) Tigger3b|DNA|TcMar-Tigger 781 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 213.5-26 chr5 127013962 127014197 + 1.33333 NA intron (NM_178450, intron 1 of 4) L1MA5A|LINE|L1 16479 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 329.999-2 chr6 66310120 66310442 + 1.33333 NA Intergenic Intergenic 522402 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 225.5-3 chr10 82872352 82872565 + 1.33333 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -639538 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 485.667-5 chr18 59697173 59698296 + 1.33333 NA promoter-TSS (NM_133459) promoter-TSS (NM_133459) -311 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 186.666-2 chr10 27033857 27034032 + 1.33333 NA intron (NM_014915, intron 24 of 33) L2|LINE|L2 66554 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 248-40 chr8 108243015 108243295 + 1.33333 NA intron (NM_001568, intron 1 of 12) L1ME3A|LINE|L1 5562 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 298.333-14 chr6 50785797 50786056 + 1.33333 NA Intergenic Intergenic -32945 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 193-35 chr8 77706016 77706429 + 1.33333 NA Intergenic Tigger2a|DNA|TcMar-Tigger 255525 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 391.167-8 chr2 110754317 110755038 + 1.33333 NA intron (NM_001371254, intron 1 of 18) L1MD2|LINE|L1 22104 NM_001371254 319.833 chr1 101561710 101562057 + 1.33333 NA Intergenic L2a|LINE|L2 238046 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 269.333-25 chr8 90129850 90130117 + 1.33333 NA Intergenic Charlie8|DNA|hAT-Charlie -47104 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 186.666-3 chr17 61941840 61942011 + 1.33333 NA TTS (NM_005121) TTS (NM_005121) -13943 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 323.333-17 chr3 35659641 35660052 + 1.33333 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) 17489 NM_016300 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 245.833-22 chr5 164715916 164716275 + 1.33333 NA Intergenic Intergenic 245816 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 200-22 chr2 63947616 63947782 + 1.33333 NA intron (NM_001005739, intron 8 of 22) X9_LINE|LINE|L1 71729 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 185-37 chr4 84977188 84977385 + 1.33333 NA intron (NR_152782, intron 2 of 3) intron (NR_152782, intron 2 of 3) 9802 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 233.833-8 chr12 120944509 120944699 + 1.33333 NA Intergenic AluSx|SINE|Alu 27688 NR_024345 283460 Hs.612351 NR_024345 ENSG00000241388 HNF1A-AS1 C12orf27|HAS1|NCRNA00262 HNF1A antisense RNA 1 ncRNA 294.833 chr1 26302945 26303357 + 1.33333 NA 5' UTR (NM_183008, exon 2 of 16) 5' UTR (NM_183008, exon 2 of 16) 3553 NM_001077262 91544 Hs.145061 NM_145345 ENSG00000158062 UBXN11 COA-1|PP2243|SOC|SOCI|UBXD5 UBX domain protein 11 protein-coding 181.333-24 chr20 11924164 11924386 + 1.33333 NA 3' UTR (NM_001282552, exon 4 of 4) 3' UTR (NM_001282552, exon 4 of 4) 6382 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 168.833-12 chr2 177799508 177799760 + 1.33333 NA intron (NM_001077197, intron 10 of 20) L1M6|LINE|L1 89122 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 183.333-30 chr15 75344588 75345078 + 1.33333 NA Intergenic AluJo|SINE|Alu -2157 NM_001352519 79661 Hs.512732 NM_024608 ENSG00000140398 NEIL1 FPG1|NEI1|hFPG1 nei like DNA glycosylase 1 protein-coding 327.333-13 chr9 104389542 104389980 + 1.33333 NA Intergenic Intergenic -114502 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 195.5-23 chr3 82264409 82264650 + 1.33333 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 278387 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 401.667 chr1 23100382 23100746 + 1.33333 NA intron (NM_001142546, intron 2 of 3) intron (NM_001142546, intron 2 of 3) 56259 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 214.333-31 chr3 194644528 194644930 + 1.33333 NA exon (NM_018385, exon 13 of 14) exon (NM_018385, exon 13 of 14) -11310 NM_001166305 93109 Hs.478729 NM_138399 ENSG00000145014 TMEM44 - transmembrane protein 44 protein-coding 429.666-6 chr8 41917171 41917592 + 1.33333 NA Intergenic L1ME1|LINE|L1 -20640 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 333.999 chr11 46108168 46108488 + 1.33333 NA intron (NR_147890, intron 1 of 18) intron (NR_147890, intron 1 of 18) 12491 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 298.999-4 chrX 50748397 50748756 + 1.33333 NA intron (NR_027121, intron 1 of 9) intron (NR_027121, intron 1 of 9) 65468 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 368-5 chr4 178336338 178336853 + 1.33333 NA Intergenic L1PA17|LINE|L1 -428659 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 193.333-27 chr18 76129160 76129440 + 1.33333 NA intron (NR_040034, intron 3 of 5) intron (NR_040034, intron 3 of 5) 6302 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 434.666-3 chr1 203558554 203559156 + 1.33333 NA Intergenic MIR|SINE|MIR 64702 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 271.5-17 chr2 72570805 72571106 + 1.33333 NA intron (NR_135774, intron 7 of 19) MIRb|SINE|MIR 255078 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 361-11 chr5 128201563 128202026 + 1.33333 NA Intergenic Intergenic 118028 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 238-37 chr8 85373549 85373857 + 1.33333 NA intron (NM_001738, intron 1 of 8) Tigger7|DNA|TcMar-Tigger 4410 NM_001128830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 334.499-2 chr5 124320424 124320820 + 1.33333 NA intron (NR_125774, intron 4 of 5) MIR|SINE|MIR 117898 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 208.666 chr1 90593411 90593605 + 1.33333 NA Intergenic L1PA17|LINE|L1 -64242 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 350-8 chr14 53924041 53924521 + 1.33333 NA Intergenic Intergenic 24203 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 301-7 chr12 47312316 47312653 + 1.33333 NA Intergenic L2a|LINE|L2 -5085 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 214.833-25 chr8 136595821 136596007 + 1.33333 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 65116 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 242.5-22 chr2 14319010 14319454 + 1.33333 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 81726 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 339.166-5 chr6 48977260 48977792 + 1.33333 NA Intergenic Intergenic 485727 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 293.5-21 chr7 110166449 110166776 + 1.33333 NA Intergenic Intergenic -206399 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 170.666-2 chr13 20863598 20863976 + 1.33333 NA intron (NM_022459, intron 2 of 22) intron (NM_022459, intron 2 of 22) 38987 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 175-42 chr3 150226091 150226534 + 1.33333 NA Intergenic Intergenic -12207 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 319.666 chr1 64929670 64929990 + 1.33333 NA intron (NM_001321852, intron 1 of 24) L1PA7|LINE|L1 36719 NM_001321857 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 176.333-25 chr3 184145283 184145460 + 1.33333 NA TTS (NM_003907) TTS (NM_003907) -10006 NM_004423 1857 Hs.388116 NM_004423 ENSG00000161202 DVL3 DRS3 dishevelled segment polarity protein 3 protein-coding 408.833-4 chr2 130342322 130343075 + 1.33333 NA promoter-TSS (NM_001321119) promoter-TSS (NM_001321119) -17 NM_001321118 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 313.5-18 chr3 123980481 123980979 + 1.33333 NA intron (NR_133919, intron 1 of 1) intron (NR_133919, intron 1 of 1) 10622 NM_017578 54763 Hs.567516 NM_017578 ENSG00000065371 ROPN1 CT91|ODF6|RHPNAP1|ROPN1A|ropporin rhophilin associated tail protein 1 protein-coding 194.333-14 chr12 122503461 122503736 + 1.33333 NA non-coding (NR_036435, exon 11 of 11) non-coding (NR_036435, exon 11 of 11) -2666 NM_001350936 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 249.999-3 chr4 168183865 168184104 + 1.33333 NA intron (NM_007193, intron 10 of 11) intron (NM_007193, intron 10 of 11) 91447 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 339.333-4 chr10 75941947 75942352 + 1.33333 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 159388 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 187.333-9 chr10 80584959 80585211 + 1.33333 NA intron (NM_207372, intron 3 of 6) intron (NM_207372, intron 3 of 6) 44266 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 268.667-12 chr15 33443478 33443817 + 1.33333 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 132680 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 202.666-2 chr1 113724664 113724883 + 1.33333 NA exon (NM_001323041, exon 7 of 19) exon (NM_001323041, exon 7 of 19) 34382 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 276.167-10 chr15 78349536 78349922 + 1.33333 NA Intergenic Intergenic 9376 NM_004378 1381 Hs.346950 NM_004378 ENSG00000166426 CRABP1 CRABP|CRABP-I|CRABPI|RBP5 cellular retinoic acid binding protein 1 protein-coding 170.666-9 chr8 140381613 140381824 + 1.33333 NA intron (NM_001160372, intron 7 of 22) L1MB7|LINE|L1 76026 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 198.333-42 chr7 6235927 6236233 + 1.33333 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) 36544 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 202.833-13 chr2 196844522 196844835 + 1.33333 NA intron (NM_001321099, intron 24 of 27) intron (NM_001321099, intron 24 of 27) -34402 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 280.166-4 chr22 25322285 25322662 + 1.33333 NA Intergenic AluY|SINE|Alu 4216 NR_029395 91353 Hs.651077 NM_001013618 IGLL3P 16.1|IGLL3 immunoglobulin lambda like polypeptide 3, pseudogene pseudo 366.666 chr20 12120127 12120571 + 1.33333 NA Intergenic L1MB1|LINE|L1 202456 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 173.333-21 chr3 43764218 43764419 + 1.33333 NA Intergenic MER124|DNA?|DNA? -72724 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 210-21 chr2 44084181 44084614 + 1.33333 NA Intergenic Intergenic -84406 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 344.666-3 chr4 101048404 101048806 + 1.33333 NA intron (NM_001130691, intron 10 of 12) intron (NM_001130691, intron 10 of 12) 192267 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 222.333-38 chr9 119556184 119556457 + 1.33333 NA Intergenic Intergenic -186885 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 230.333-10 chr14 62478957 62479253 + 1.33333 NA Intergenic L1ME1|LINE|L1 -339132 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 256.5-4 chr10 128530153 128530539 + 1.33333 NA Intergenic Intergenic 244396 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 223.333-36 chr5 103829795 103829989 + 1.33333 NA Intergenic Intergenic -267103 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 288-3 chr1 199168035 199168384 + 1.33333 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 19611 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 272.666 chr1 58739280 58739626 + 1.33333 NA Intergenic MIRb|SINE|MIR -39391 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 301.667-9 chr17 76041180 76041425 + 1.33333 NA intron (NM_001260503, intron 6 of 8) MIR|SINE|MIR 12354 NM_001260503 6730 Hs.514495 NM_014230 ENSG00000167881 SRP68 - signal recognition particle 68 protein-coding 300.333-3 chr11 110195317 110195557 + 1.33333 NA TTS (NM_001260492) TTS (NM_001260492) 101275 NM_001260496 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 420-10 chr5 96790718 96791458 + 1.33333 NA intron (NM_001198541, intron 8 of 18) intron (NM_001198541, intron 8 of 18) 16857 NM_001040458 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 412.167-4 chr4 154551886 154552357 + 1.33333 NA Intergenic Intergenic -1688 NM_001201564 5356 Hs.249996 NM_002669 ENSG00000171566 PLRG1 Cwc1|PRL1|PRP46|PRPF46|TANGO4 pleiotropic regulator 1 protein-coding 188.667-40 chr5 144526629 144527040 + 1.33333 NA Intergenic L1MA7|LINE|L1 321443 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 309-12 chr19 42401072 42401439 + 1.33333 NA TTS (NM_005357) TTS (NM_005357) 4107 NR_073180 100996307 Hs.466840 NR_073179 ENSG00000213904 LIPE-AS1 - LIPE antisense RNA 1 ncRNA 280.666-2 chr22 49767495 49767932 + 1.33333 NA Intergenic L1M3f|LINE|L1 56618 NM_001349942 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 244 chr1 30823426 30823712 + 1.33333 NA Intergenic Intergenic -1083 NR_146732 105378622 Hs.209284 NR_146732 ENSG00000223382 LINC01778 - long intergenic non-protein coding RNA 1778 ncRNA 164-12 chr11 122781888 122782075 + 1.33333 NA intron (NM_001363365, intron 4 of 13) MIRc|SINE|MIR -56519 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 309-19 chr5 8694884 8695237 + 1.33333 NA Intergenic Intergenic -144672 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 383.833 chr11 115437541 115438444 + 1.33333 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 41236 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 359-3 chr11 102794329 102794864 + 1.33333 NA intron (NR_038390, intron 2 of 7) intron (NR_038390, intron 2 of 7) 3564 NM_001145938 4312 Hs.83169 NM_002421 ENSG00000196611 MMP1 CLG|CLGN matrix metallopeptidase 1 protein-coding 250.499-2 chr3 173904952 173905164 + 1.33333 NA intron (NM_001365928, intron 4 of 6) LTR86B2|LTR|ERVL 15738 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 260.999 chr14 64415247 64415468 + 1.33333 NA intron (NM_005956, intron 4 of 27) intron (NM_005956, intron 4 of 27) 27004 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 426-3 chr12 48942698 48943034 + 1.33333 NA intron (NM_001659, intron 1 of 4) AluSx|SINE|Alu 14621 NM_001659 377 Hs.119177 NM_001659 ENSG00000134287 ARF3 - ADP ribosylation factor 3 protein-coding 351-3 chr11 126211371 126211735 + 1.33333 NA promoter-TSS (NM_001363516) promoter-TSS (NM_001363516) 97 NM_001363516 84881 Hs.150458 NM_032795 ENSG00000165526 RPUSD4 - RNA pseudouridine synthase D4 protein-coding 163.5-10 chr12 99345441 99345611 + 1.33333 NA intron (NM_152788, intron 12 of 25) MIR3|SINE|MIR -190436 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 247.333-8 chr18 77556253 77556520 + 1.33333 NA Intergenic Intergenic 306538 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 231-5 chr11 7075966 7076337 + 1.33333 NA Intergenic MER96B|DNA|hAT-Tip100 -12847 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 265.333-8 chr17 6412944 6413489 + 1.33333 NA Intergenic MER91B|DNA|hAT-Tip100 21905 NM_001285403 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 210-10 chr12 53038711 53039072 + 1.33333 NA intron (NM_001330654, intron 11 of 13) intron (NM_001330654, intron 11 of 13) -8135 NM_198316 23371 Hs.6147 NM_015319 ENSG00000111077 TNS2 C1-TEN|C1TEN|TENC1 tensin 2 protein-coding 301.333-20 chr7 55258178 55258924 + 1.33333 NA Intergenic L1M5|LINE|L1 -2916 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 341.166 chr1 26879884 26880281 + 1.33333 NA intron (NM_018066, intron 4 of 4) intron (NM_018066, intron 4 of 4) 10201 NM_018066 54707 Hs.14333 NM_018066 ENSG00000142751 GPN2 ATPBD1B GPN-loop GTPase 2 protein-coding 328.166 chr10 17153951 17154412 + 1.33333 NA intron (NM_004412, intron 9 of 10) intron (NM_004412, intron 9 of 10) -24364 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 407.5-15 chr8 42893103 42893615 + 1.33333 NA intron (NM_030954, intron 1 of 6) intron (NM_030954, intron 1 of 6) 2916 NR_039679 100616115 NR_039679 ENSG00000284062 MIR4469 mir-4469 microRNA 4469 ncRNA 396.5-4 chr2 103458428 103458871 + 1.33333 NA Intergenic L1MC4|LINE|L1 -474220 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 361-2 chr1 194159714 194160121 + 1.33333 NA Intergenic Intergenic 855172 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 235.666-5 chr6 167793313 167793704 + 1.33333 NA intron (NR_026773, intron 1 of 3) intron (NR_026773, intron 1 of 3) -2021 NR_149041 441179 Hs.192711 NR_149041 ENSG00000269155 LOC441179 - uncharacterized LOC441179 ncRNA 244.666-6 chr19 43861137 43861360 + 1.33333 NA Intergenic L1MA5A|LINE|L1 18888 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 202.667-34 chr5 55942453 55942724 + 1.33333 NA intron (NR_157112, intron 17 of 17) intron (NR_157112, intron 17 of 17) 52375 NM_001364277 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 182-25 chr2 237223733 237223948 + 1.33333 NA Intergenic LTR16A1|LTR|ERVL 137951 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 232.667-39 chr8 130222646 130222978 + 1.33333 NA intron (NM_001362925, intron 4 of 29) MIRb|SINE|MIR 73721 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 169-31 chr2 144909265 144909533 + 1.33333 NA intron (NR_033870, intron 3 of 4) L1MA7|LINE|L1 241432 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 271.333-20 chr4 112260796 112261174 + 1.33333 NA intron (NM_001128426, intron 5 of 8) intron (NM_001128426, intron 5 of 8) 24919 NM_052864 92610 Hs.310640 NM_052864 ENSG00000145365 TIFA T2BP|T6BP|TIFAA TRAF interacting protein with forkhead associated domain protein-coding 373-5 chr14 54408927 54409447 + 1.33333 NA intron (NM_001330173, intron 4 of 8) intron (NM_001330173, intron 4 of 8) 12180 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 264-34 chr9 121195904 121196304 + 1.33333 NA intron (NM_016322, intron 1 of 7) intron (NM_016322, intron 1 of 7) -5379 NM_001353053 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 472.333-2 chr20 60057206 60057804 + 1.33333 NA non-coding (NR_126504, exon 2 of 2) non-coding (NR_126504, exon 2 of 2) 1580 NR_161293 284756 Hs.335319 NR_126504 ENSG00000176659 C20orf197 - chromosome 20 open reading frame 197 ncRNA 200.5-9 chr14 21682632 21682852 + 1.33333 NA Intergenic Intergenic -11725 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 200-32 chr5 106022435 106022721 + 1.33333 NA Intergenic Intergenic 923104 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 184-39 chr4 162438329 162438521 + 1.33333 NA Intergenic Intergenic -274391 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 348-8 chr2 78325219 78325736 + 1.33333 NA Intergenic Intergenic -34746 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 309.667-2 chr10 6918486 6918885 + 1.33333 NA Intergenic Intergenic 139087 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 181.5-39 chr6 11660771 11660993 + 1.33333 NA Intergenic L1MD|LINE|L1 118165 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 417.833-9 chr3 155702582 155703070 + 1.33333 NA intron (NM_001349252, intron 2 of 24) intron (NM_001349252, intron 2 of 24) 1438 NM_014996 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 347-18 chr3 119868782 119869336 + 1.33333 NA intron (NM_002093, intron 8 of 11) AluSx1|SINE|Alu 86349 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 176.666-6 chr20 49999738 49999890 + 1.33333 NA Intergenic Intergenic 16834 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 270-17 chr16 9423515 9423766 + 1.33333 NA Intergenic Intergenic 21345 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 337.333 chr1 57432498 57432798 + 1.33333 NA intron (NM_001353980, intron 4 of 5) MLT1K|LTR|ERVL-MaLR -7727 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 268-32 chr6 143338105 143338539 + 1.33333 NA 3' UTR (NM_001363721, exon 6 of 6) 3' UTR (NM_001363721, exon 6 of 6) 104355 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 192-9 chr12 123163403 123163652 + 1.33333 NA intron (NR_103517, intron 19 of 23) intron (NR_103517, intron 19 of 23) -53038 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 208.334-2 chr10 118378190 118378596 + 1.33333 NA Intergenic Intergenic 21285 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 362-4 chr1 205672270 205672554 + 1.33333 NA intron (NM_033102, intron 1 of 4) intron (NM_033102, intron 1 of 4) 8097 NM_033102 85414 Hs.278695 NM_033102 ENSG00000158715 SLC45A3 IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST solute carrier family 45 member 3 protein-coding 277.333-7 chr11 45348729 45349053 + 1.33333 NA Intergenic Intergenic -6480 NR_120558 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 291.334-4 chr18 11860048 11860467 + 1.33333 NA intron (NM_001261444, intron 1 of 7) intron (NM_001261444, intron 1 of 7) 2504 NM_001261444 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 292-6 chr11 112440315 112440645 + 1.33333 NA Intergenic L1M1|LINE|L1 -41752 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 257.333-19 chr5 29374421 29374634 + 1.33333 NA Intergenic Intergenic 21449 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 282.499 chr13 76319218 76319429 + 1.33333 NA Intergenic (TATCATA)n|Simple_repeat|Simple_repeat -384191 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 174.667-11 chr12 19860927 19861128 + 1.33333 NA Intergenic L1MEg|LINE|L1 -153658 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 238.5-5 chr10 107144705 107144948 + 1.33333 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 19880 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 299.333-16 chr6 36616896 36617242 + 1.33333 NA Intergenic Intergenic 5443 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 247-2 chr1 93043267 93043532 + 1.33333 NA Intergenic Intergenic -35836 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 208-8 chr11 73061103 73061395 + 1.33333 NA intron (NM_014824, intron 3 of 19) L1PA7|LINE|L1 81069 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 280.999-2 chr16 55034870 55035211 + 1.33333 NA Intergenic MER113|DNA|hAT-Charlie 103841 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 672.501 chr16 75433607 75434507 + 1.33333 NA promoter-TSS (NM_006324) promoter-TSS (NM_006324) -554 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 256.666-6 chr3 185131918 185132303 + 1.33333 NA intron (NM_001025266, intron 1 of 1) L1MEd|LINE|L1 20950 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 201.834-11 chr7 31126949 31127242 + 1.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR 74634 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 209-16 chr19 43955614 43955844 + 1.33333 NA intron (NM_001297589, intron 1 of 4) MER21-int|LTR|ERVL 4484 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 333.166-8 chr6 4154618 4155278 + 1.33333 NA non-coding (NR_103764, exon 3 of 4) non-coding (NR_103764, exon 3 of 4) 18876 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 255-34 chr6 51100428 51100823 + 1.33333 NA Intergenic LTR16A|LTR|ERVL 281754 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 277.833-2 chr1 206898570 206898871 + 1.33333 NA intron (NM_001185158, intron 2 of 4) intron (NM_001185158, intron 2 of 4) 1277 NM_001185158 11009 Hs.58831 NM_006850 ENSG00000162892 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 201.333-39 chr4 102346624 102346958 + 1.33333 NA Intergenic L3|LINE|CR1 -1309 NM_001135146 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 265.666-6 chr20 8591963 8592351 + 1.33333 NA intron (NM_182734, intron 3 of 32) Tigger4|DNA|TcMar-Tigger -239028 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 229.333-28 chr4 133913632 133913808 + 1.33333 NA Intergenic Intergenic 288069 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 181.166-3 chr7 46097967 46098158 + 1.33333 NA Intergenic L1MB7|LINE|L1 -176790 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 239.333-41 chrX 104271203 104271391 + 1.33333 NA Intergenic Intergenic -16364 NM_153448 80712 Hs.223782 NM_153448 ENSG00000123576 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 262.5-17 chr3 113745131 113745738 + 1.33333 NA intron (NM_025146, intron 1 of 4) intron (NM_025146, intron 1 of 4) 815 NM_001308445 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 362.999-3 chr9 99884075 99884546 + 1.33333 NA Intergenic Intergenic 22291 NR_038853 441461 Hs.163155 NR_038853 ENSG00000255145 STX17-AS1 - STX17 antisense RNA 1 ncRNA 215.333-20 chr14 37390219 37390518 + 1.33333 NA intron (NM_138731, intron 11 of 13) L1MEg|LINE|L1 192431 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 164.5-8 chr10 116443390 116443617 + 1.33333 NA intron (NM_001011709, intron 3 of 11) intron (NM_001011709, intron 3 of 11) 15656 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 319.833-4 chr10 114845467 114845944 + 1.33333 NA intron (NM_001135051, intron 8 of 16) intron (NM_001135051, intron 8 of 16) 23925 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 615.666 chr1 169711793 169712464 + 1.33333 NA promoter-TSS (NM_000655) promoter-TSS (NM_000655) -508 NM_000655 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 186.833-26 chr8 120012029 120012263 + 1.33333 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -112956 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 190.333-32 chr5 26241100 26241359 + 1.33333 NA Intergenic Intergenic 797357 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 397.333-3 chr4 100516300 100516728 + 1.33333 NA intron (NM_001159694, intron 1 of 10) intron (NM_001159694, intron 1 of 10) 1508 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 286-24 chr8 79365468 79365830 + 1.33333 NA Intergenic MER5B|DNA|hAT-Charlie 33461 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 327.333-4 chr10 116341054 116341444 + 1.33333 NA intron (NM_198515, intron 4 of 8) intron (NM_198515, intron 4 of 8) 16801 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 178.333-41 chr8 133242316 133242643 + 1.33333 NA intron (NM_001135242, intron 14 of 15) MIRb|SINE|MIR 51440 NM_003882 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 307.167-7 chr11 12281637 12282200 + 1.33333 NA Intergenic Intergenic -4982 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 354.667-13 chr5 39547501 39548026 + 1.33333 NA Intergenic Intergenic 27332 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 302.166 chr2 31882476 31882761 + 1.33333 NA intron (NR_126032, intron 5 of 6) intron (NR_126032, intron 5 of 6) -78638 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 177-12 chr14 43209363 43209872 + 1.33333 NA Intergenic L1MC|LINE|L1 1297666 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 221.666 chr10 7067091 7067305 + 1.33333 NA Intergenic Intergenic 119586 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 345.999-2 chr1 246898132 246898403 + 1.33333 NA exon (NM_001323342, exon 12 of 36) exon (NM_001323342, exon 12 of 36) 33091 NM_015446 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 192.666-5 chr3 78528824 78529084 + 1.33333 NA Intergenic L1M4a1|LINE|L1 -479991 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 351.666 chr13 21164758 21165197 + 1.33333 NA intron (NM_145061, intron 4 of 8) intron (NM_145061, intron 4 of 8) 11575 NM_001166017 221150 Hs.88523 NM_145061 ENSG00000165480 SKA3 C13orf3|RAMA1 spindle and kinetochore associated complex subunit 3 protein-coding 465-5 chr5 169536958 169537639 + 1.33333 NA Intergenic MIR|SINE|MIR -46475 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 314.666 chr1 17440021 17440358 + 1.33333 NA promoter-TSS (NM_018715) promoter-TSS (NM_018715) -512 NM_018715 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 319.333-11 chr4 111832868 111833209 + 1.33333 NA Intergenic Intergenic -312416 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 256.833-19 chrX 76454826 76455079 + 1.33333 NA Intergenic L1PA16|LINE|L1 27242 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 221.666-9 chr9 77808018 77808362 + 1.33333 NA intron (NM_002072, intron 3 of 6) intron (NM_002072, intron 3 of 6) -159868 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 291.999-3 chr9 76658700 76658970 + 1.33333 NA intron (NM_001308048, intron 9 of 17) intron (NM_001308048, intron 9 of 17) 33580 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 274.999-4 chr4 74354300 74354638 + 1.33333 NA Intergenic Intergenic -10676 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 273.333-7 chr16 87456868 87457113 + 1.33333 NA intron (NM_015144, intron 2 of 12) intron (NM_015144, intron 2 of 12) 34864 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 220.666-8 chrX 151749704 151749905 + 1.33333 NA Intergenic Intergenic 15058 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 293.333-7 chr12 52728841 52729127 + 1.33333 NA Intergenic L1M5|LINE|L1 -25460 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 217.666-6 chr8 115124127 115124431 + 1.33333 NA Intergenic LTR16A1|LTR|ERVL 543734 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 235.667-28 chr8 133393719 133394045 + 1.33333 NA Intergenic Intergenic -96578 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 266-13 chr19 35844829 35845085 + 1.33333 NA intron (NM_004646, intron 14 of 28) AluJr|SINE|Alu 7036 NM_004646 4868 Hs.122186 NM_004646 ENSG00000161270 NPHS1 CNF|NPHN|nephrin NPHS1 adhesion molecule, nephrin protein-coding 243.5-18 chr2 234104510 234104841 + 1.33333 NA Intergenic L1MA8|LINE|L1 53973 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 235.833-14 chr3 94057725 94058301 + 1.33333 NA TTS (NM_001195643) TTS (NM_001195643) 4903 NM_001195643 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 190.167-24 chr8 125969097 125969615 + 1.33333 NA Intergenic Intergenic -18159 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 176.333-13 chr2 20634703 20634938 + 1.33333 NA intron (NM_022460, intron 4 of 6) intron (NM_022460, intron 4 of 6) 16278 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 293.833-8 chr3 133569178 133569451 + 1.33333 NA Intergenic MADE2|DNA|TcMar-Mariner -4372 NM_001134422 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 378.166-5 chr8 70668365 70669128 + 1.33333 NA promoter-TSS (NM_001287258) promoter-TSS (NM_001287258) 439 NM_016027 51110 Hs.118554 NM_016027 ENSG00000147592 LACTB2 CGI-83 lactamase beta 2 protein-coding 237.5-12 chr14 41797048 41797282 + 1.33333 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 190309 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 335.999-2 chr17 34146510 34146936 + 1.33333 NA intron (NM_001094, intron 1 of 9) LTR16A1|LTR|ERVL 10083 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 271-22 chr4 88706432 88706677 + 1.33333 NA intron (NM_001271602, intron 24 of 24) intron (NM_001271602, intron 24 of 24) -3235 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 222.333-6 chr12 115392729 115393053 + 1.33333 NA Intergenic L1MB1|LINE|L1 -708716 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 325.167-7 chr19 43492545 43493035 + 1.33333 NA intron (NM_198850, intron 9 of 15) MIR|SINE|MIR 12043 NM_198850 653583 Hs.631581 NM_198850 ENSG00000176531 PHLDB3 - pleckstrin homology like domain family B member 3 protein-coding 203.333-10 chr10 74080039 74080267 + 1.33333 NA intron (NM_014000, intron 6 of 21) intron (NM_014000, intron 6 of 21) 70675 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 279.166-7 chr8 82635312 82635711 + 1.33333 NA Intergenic AluSx4|SINE|Alu -276593 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 191.666-12 chr8 120797105 120797394 + 1.33333 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 14797 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 234.833-24 chr7 102236922 102237108 + 1.33333 NA intron (NM_001202543, intron 22 of 23) intron (NM_001202543, intron 22 of 23) -48126 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 222-20 chr22 21699787 21700060 + 1.33333 NA TTS (NM_148175) TTS (NM_148175) 33911 NM_014337 23759 Hs.438587 NM_014337 ENSG00000100023 PPIL2 CYC4|CYP60|Cyp-60|UBOX7|hCyP-60 peptidylprolyl isomerase like 2 protein-coding 235.333-8 chr19 48492936 48493294 + 1.33333 NA intron (NM_001080434, intron 13 of 15) CpG 20074 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 226.334-5 chr20 58818720 58818963 + 1.33333 NA promoter-TSS (NR_030580) promoter-TSS (NR_030580) -528 NR_030580 100126296 NR_030580 ENSG00000216031 MIR298 MIRN298|hsa-mir-298 microRNA 298 ncRNA 286.999-4 chr7 150898370 150898626 + 1.33333 NA Intergenic Intergenic 45981 NM_001272072 26 Hs.647097 NM_001091 ENSG00000002726 AOC1 ABP|ABP1|DAO|DAO1|KAO amine oxidase copper containing 1 protein-coding 293.333-11 chr17 39683606 39684000 + 1.33333 NA intron (NM_001291726, intron 2 of 6) intron (NM_001291726, intron 2 of 6) 4254 NM_033419 93210 Hs.462971 NM_033419 ENSG00000161395 PGAP3 AGLA546|CAB2|PERLD1|PP1498|hCOS16 post-GPI attachment to proteins 3 protein-coding 202.5-29 chr2 33378882 33379154 + 1.33333 NA intron (NM_206943, intron 31 of 33) intron (NM_206943, intron 31 of 33) -39498 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 372.999-2 chr19 41794764 41795217 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -1597 NM_001815 1084 Hs.11 NM_001815 ENSG00000170956 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding 509.833-3 chr19 58380459 58381178 + 1.33333 NA intron (NM_138466, intron 1 of 2) CpG 212 NR_049780 116412 Hs.222236 NM_138466 ENSG00000152475 ZNF837 - zinc finger protein 837 protein-coding 194.5-13 chr12 17187473 17187715 + 1.33333 NA Intergenic L1ME2|LINE|L1 198847 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 412.666-3 chr8 118910050 118910516 + 1.33333 NA Intergenic Intergenic 41602 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 285.5-17 chr3 51514094 51514470 + 1.33333 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -14267 NM_001349170 9730 Hs.716623 NM_014703 ENSG00000145041 DCAF1 RIP|VPRBP DDB1 and CUL4 associated factor 1 protein-coding 300.333-12 chr8 72944596 72944948 + 1.33333 NA Intergenic Intergenic -64092 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 345.833-3 chr11 112458937 112459556 + 1.33333 NA Intergenic L1MEd|LINE|L1 -22986 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 253.333-28 chr5 19636545 19636842 + 1.33333 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 249579 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 391.501-4 chr3 81666436 81666765 + 1.33333 NA intron (NM_000158, intron 3 of 15) intron (NM_000158, intron 3 of 15) 95045 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 181-39 chr8 140828140 140828351 + 1.33333 NA intron (NR_148037, intron 9 of 34) L2a|LINE|L2 -95592 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 297.5-15 chr3 38842249 38842680 + 1.33333 NA Intergenic LTR105_Mam|LTR|ERVL -48454 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 196.166-5 chrX 95318759 95319097 + 1.33333 NA Intergenic L1PA17|LINE|L1 -255702 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 272-34 chrY 11310184 11310480 + 1.33333 NA Intergenic BSR/Beta|Satellite|Satellite 1111258 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 280.499-2 chr2 29428618 29429036 + 1.33333 NA intron (NM_004304, intron 4 of 28) L1M4b|LINE|L1 46550 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 343.333-8 chr2 157587623 157588110 + 1.33333 NA intron (NM_145259, intron 1 of 8) intron (NM_145259, intron 1 of 8) 9694 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 229.333-33 chr6 129017695 129018005 + 1.33333 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 134709 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 345.333-5 chr18 76253146 76253556 + 1.33333 NA Intergenic Intergenic 43841 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 402.667-10 chr19 38869761 38870271 + 1.33333 NA exon (NM_198445, exon 9 of 12) exon (NM_198445, exon 9 of 12) 8259 NM_001195833 126432 Hs.446933 NM_198445 ENSG00000187994 RINL - Ras and Rab interactor like protein-coding 236-32 chr9 136123064 136123526 + 1.33333 NA Intergenic Intergenic -4420 NR_134506 90120 Hs.287411 NM_152833 ENSG00000238227 TMEM250 C9orf69 transmembrane protein 250 protein-coding 267-25 chr5 72552084 72552384 + 1.33333 NA Intergenic Intergenic -4843 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 362-6 chr11 29332447 29333012 + 1.33333 NA Intergenic Intergenic -261684 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 166.166-4 chr2 85578154 85578366 + 1.33333 NA intron (NM_003761, intron 1 of 2) intron (NM_003761, intron 1 of 2) 674 NM_003761 8673 Hs.714302 NM_003761 ENSG00000118640 VAMP8 EDB|VAMP-8 vesicle associated membrane protein 8 protein-coding 399.333-7 chr22 29617822 29618694 + 1.33333 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 14625 NM_181825 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 181.833-9 chr17 35242234 35242566 + 1.33333 NA promoter-TSS (NM_001330183) promoter-TSS (NM_001330183) -672 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 296.5-24 chr8 73306966 73307278 + 1.33333 NA intron (NM_172037, intron 2 of 5) intron (NM_172037, intron 2 of 5) 12520 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 283.167-16 chr6 152992947 152993495 + 1.33333 NA intron (NR_126056, intron 4 of 5) intron (NR_126056, intron 4 of 5) 9488 NM_001114184 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 413.833-5 chr5 65100620 65101248 + 1.33333 NA Intergenic L2b|LINE|L2 332004 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 250.833-16 chr8 136933774 136934088 + 1.33333 NA Intergenic Tigger2a|DNA|TcMar-Tigger 403133 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 239.333-2 chr1 246862569 246862855 + 1.33333 NA intron (NM_015446, intron 27 of 35) intron (NM_015446, intron 27 of 35) 68646 NM_015446 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 176.667-43 chr4 85558526 85558775 + 1.33333 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 83500 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 196.666-2 chr11 129422886 129423061 + 1.33333 NA intron (NM_003658, intron 1 of 3) AluSq2|SINE|Alu 47125 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 305.333-5 chr15 43360674 43361112 + 1.33333 NA 3' UTR (NM_152455, exon 5 of 5) 3' UTR (NM_152455, exon 5 of 5) 9167 NM_152455 146050 Hs.418287 NM_152455 ENSG00000140265 ZSCAN29 ZNF690|Zfp690 zinc finger and SCAN domain containing 29 protein-coding 236-6 chr12 58411306 58411583 + 1.33333 NA Intergenic Intergenic -180258 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 267.666-10 chr8 91971036 91971283 + 1.33333 NA intron (NM_004349, intron 9 of 10) intron (NM_004349, intron 9 of 10) 46521 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 267.333-6 chr13 83590708 83591027 + 1.33333 NA Intergenic MIR|SINE|MIR 291526 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 317.667-12 chr8 31447228 31447720 + 1.33333 NA Intergenic Intergenic -192278 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 334.833-7 chr5 173055736 173056260 + 1.33333 NA promoter-TSS (NM_001168393) promoter-TSS (NM_001168393) -354 NM_001168393 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 531.999 chr17 52319958 52320631 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -70228 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 260.5-4 chr11 73104659 73105004 + 1.33333 NA intron (NM_014824, intron 2 of 19) AluSx|SINE|Alu 37487 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 322.333-8 chr2 75758879 75759368 + 1.33333 NA Intergenic AluY|SINE|Alu -48208 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 230.833-12 chr20 43201701 43201899 + 1.33333 NA Intergenic Intergenic -11894 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 267-9 chr12 10121457 10121710 + 1.33333 NA intron (NM_197948, intron 4 of 4) L1MEg|LINE|L1 8616 NM_197950 64581 Hs.143929 NM_022570 ENSG00000172243 CLEC7A BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2 C-type lectin domain containing 7A protein-coding 424-9 chr6 27835216 27835592 + 1.33333 NA Intergenic Intergenic 2935 NM_003510 8330 Hs.734717 NM_003510 ENSG00000275221 HIST1H2AK H2A/d|H2AFD histone cluster 1 H2A family member k protein-coding 259.999 chr21 31521413 31521625 + 1.33333 NA intron (NM_003253, intron 1 of 28) AluJr|SINE|Alu 37568 NM_003253 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 286-9 chr2 12956032 12956449 + 1.33333 NA Intergenic Intergenic 50773 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 185-42 chr8 142029101 142029278 + 1.33333 NA Intergenic Intergenic -147150 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 224.666-5 chr2 145012977 145013285 + 1.33333 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 345164 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 201-4 chr11 100828218 100828603 + 1.33333 NA intron (NM_001367945, intron 5 of 25) intron (NM_001367945, intron 5 of 25) -105864 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 273.333-18 chr6 158219211 158219564 + 1.33333 NA Intergenic MLT1J2|LTR|ERVL-MaLR 51040 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 295.666-11 chr4 41279437 41279820 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR 22700 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 245.666-11 chr8 106619066 106619382 + 1.33333 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -38584 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 359.5 chr1 191413416 191413850 + 1.33333 NA Intergenic L1ME1|LINE|L1 -185135 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 359.666-4 chr17 28648256 28648676 + 1.33333 NA non-coding (NR_045585, exon 3 of 3) non-coding (NR_045585, exon 3 of 3) -3307 NM_001363827 9703 Hs.151761 NM_014680 ENSG00000007202 KIAA0100 BCOX|BCOX1|CT101|FMP27 KIAA0100 protein-coding 353.999-2 chr3 81725859 81726203 + 1.33333 NA intron (NM_000158, intron 1 of 15) intron (NM_000158, intron 1 of 15) 35614 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 170.667-35 chr5 39283271 39283539 + 1.33333 NA TTS (NM_001737) TTS (NM_001737) -12756 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 231.333-37 chr9 27549501 27549837 + 1.33333 NA intron (NM_001256054, intron 9 of 10) intron (NM_001256054, intron 9 of 10) -19855 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 196.666-6 chr9 122178843 122179026 + 1.33333 NA intron (NM_001286828, intron 3 of 3) intron (NM_001286828, intron 3 of 3) 19026 NM_198469 254956 Hs.71428 NM_198469 ENSG00000185681 MORN5 C9orf113|C9orf18 MORN repeat containing 5 protein-coding 330.499-2 chr3 122187811 122188176 + 1.33333 NA intron (NM_001178065, intron 1 of 6) MIRb|SINE|MIR 3666 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 258.666-10 chr6 111420976 111421181 + 1.33333 NA intron (NM_002912, intron 2 of 32) AluY|SINE|Alu -62394 NR_034110 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA 198.333-4 chr1 240946684 240947157 + 1.33333 NA intron (NM_001350116, intron 4 of 16) L1MA6|LINE|L1 -185352 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 221.5-7 chr10 76310810 76311010 + 1.33333 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 528149 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 221.5-11 chr16 59573818 59574039 + 1.33333 NA Intergenic Intergenic 181263 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 170.166-6 chr9 126771250 126771439 + 1.33333 NA Intergenic AluJr|SINE|Alu -33662 NM_001135776 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 224.666-2 chr18 25310168 25310344 + 1.33333 NA intron (NM_001308225, intron 2 of 6) intron (NM_001308225, intron 2 of 6) 41910 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 168.667-40 chr5 121572127 121572325 + 1.33333 NA Intergenic Intergenic 249676 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 487.001 chr13 89066826 89067487 + 1.33333 NA Intergenic Intergenic -168135 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 167-31 chr4 115371738 115372082 + 1.33333 NA Intergenic Intergenic -258290 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 194-40 chr8 19536496 19536693 + 1.33333 NA intron (NM_001354497, intron 1 of 7) L1MD|LINE|L1 65951 NM_001130518 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 330.167-6 chr5 77177771 77178100 + 1.33333 NA Intergenic MER44C|DNA|TcMar-Tigger -2369 NM_001349750 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 309.833-6 chr4 48642869 48643334 + 1.33333 NA intron (NM_015030, intron 3 of 63) intron (NM_015030, intron 3 of 63) 137198 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 286.666-3 chr16 79062112 79062399 + 1.33333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 538482 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 185.833-5 chr12 16610916 16611197 + 1.33333 NA Intergenic Intergenic -2842 NM_001243609 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 259-13 chr12 47717473 47717930 + 1.33333 NA intron (NM_001172440, intron 1 of 7) intron (NM_001172440, intron 1 of 7) 7789 NM_006025 8909 Hs.997 NM_006025 ENSG00000111405 ENDOU P11|PP11|PRSS26 endonuclease, poly(U) specific protein-coding 264.666-8 chr18 55343091 55343382 + 1.33333 NA intron (NM_001243228, intron 8 of 19) intron (NM_001243228, intron 8 of 19) -21395 NM_001348214 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 286.333-4 chr15 44476022 44476420 + 1.33333 NA intron (NM_016396, intron 2 of 12) AluYj4|SINE|Alu 48592 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 261.666-6 chr2 161353441 161353695 + 1.33333 NA intron (NM_005805, intron 3 of 11) L2c|LINE|L2 45143 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 182.5-26 chr4 54130832 54131149 + 1.33333 NA Intergenic Intergenic 30827 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 220.333-16 chr2 154632391 154632604 + 1.33333 NA Intergenic Intergenic -66084 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 198.333-39 chr6 95203107 95203323 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 374236 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 239.5-39 chr8 41102513 41102851 + 1.33333 NA Intergenic ERVL-B4-int|LTR|ERVL 168461 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 213.333-42 chr7 46547562 46547758 + 1.33333 NA Intergenic L1ME1|LINE|L1 149462 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 276.5-9 chr2 17459393 17459746 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR 58871 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 414.333-4 chr8 80170818 80171612 + 1.33333 NA promoter-TSS (NR_105036) promoter-TSS (NR_105036) -15 NR_105036 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 182.833-35 chr7 104050626 104050959 + 1.33333 NA Intergenic L1M4|LINE|L1 -61134 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 278-16 chr2 40835155 40835480 + 1.33333 NA Intergenic L1M4b|LINE|L1 -322882 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 284.833-5 chr12 12720331 12720733 + 1.33333 NA intron (NM_004064, intron 2 of 2) intron (NM_004064, intron 2 of 2) 3262 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 214.333-14 chr15 62818879 62819039 + 1.33333 NA intron (NM_015059, intron 49 of 55) AluJr|SINE|Alu -4998 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 183.333-46 chr3 120416044 120416317 + 1.33333 NA intron (NM_007085, intron 2 of 10) intron (NM_007085, intron 2 of 10) -20451 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 186.667-2 chr1 27935126 27935394 + 1.33333 NA intron (NM_001009568, intron 1 of 6) intron (NM_001009568, intron 1 of 6) 260 NM_014474 27293 Hs.123659 NM_014474 ENSG00000130768 SMPDL3B ASML3B sphingomyelin phosphodiesterase acid like 3B protein-coding 179-6 chr11 15387151 15387436 + 1.33333 NA Intergenic Charlie2a|DNA|hAT-Charlie 238191 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 200.667-10 chr12 7994788 7995052 + 1.33333 NA Intergenic Intergenic -37796 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 402.334-4 chr6 137637213 137637849 + 1.33333 NA Intergenic Intergenic -28115 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 186.667-39 chr22 19538632 19538848 + 1.33333 NA Intergenic L1M4|LINE|L1 -13403 NM_001130861 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 308.5-3 chr1 242067296 242067616 + 1.33333 NA Intergenic L1MB3|LINE|L1 -68358 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 314.499 chr2 11421687 11422005 + 1.33333 NA Intergenic Intergenic 27865 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 326.666-5 chr18 11356384 11356774 + 1.33333 NA Intergenic L1MA9|LINE|L1 -97899 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 191.333 chr1 28648044 28648399 + 1.33333 NA promoter-TSS (NR_004407) promoter-TSS (NR_004407) -379 NR_004407 26824 Hs.640266 NR_004407 ENSG00000274978 RNU11 RNU11-1|U11 RNA, U11 small nuclear snRNA 170.333-43 chr4 87844610 87844765 + 1.33333 NA intron (NM_001184696, intron 4 of 4) L2c|LINE|L2 9984 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 257.333-11 chr17 59546989 59547228 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -18502 NM_024612 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 290.666-3 chr2 71858307 71858609 + 1.33333 NA Intergenic Intergenic 289404 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 275.999 chr10 88154761 88155204 + 1.33333 NA Intergenic Intergenic 291357 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 334.501 chr20 63496225 63496688 + 1.33333 NA intron (NM_001958, intron 2 of 7) intron (NM_001958, intron 2 of 7) 2627 NM_001958 1917 Hs.433839 NM_001958 ENSG00000101210 EEF1A2 EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL eukaryotic translation elongation factor 1 alpha 2 protein-coding 235.834-10 chr7 34846166 34846509 + 1.33333 NA intron (NM_207172, intron 7 of 8) MER20B|DNA|hAT-Charlie -12006 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 185.333-56 chr8 145039020 145039209 + 1.33333 NA Intergenic MER70C|LTR|ERVL -13353 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 257-3 chr10 32851469 32851827 + 1.33333 NA intron (NM_001321115, intron 40 of 43) L1M3|LINE|L1 49824 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 455.333-2 chr14 70921807 70922289 + 1.33333 NA intron (NM_014982, intron 1 of 35) intron (NM_014982, intron 1 of 35) 14589 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 191.5-36 chr4 57137370 57137600 + 1.33333 NA intron (NR_034081, intron 1 of 4) MER41-int|LTR|ERV1 -27100 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 295-4 chr10 71700039 71700361 + 1.33333 NA intron (NM_022124, intron 21 of 67) AluSz|SINE|Alu 19578 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 420-4 chr14 58911959 58912386 + 1.33333 NA intron (NR_110547, intron 3 of 5) Charlie29a|DNA|hAT-Charlie 83884 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 184-3 chr1 170682933 170683455 + 1.33333 NA intron (NM_022716, intron 1 of 3) L2b|LINE|L2 19063 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 259.166-3 chr17 71485161 71485389 + 1.33333 NA Intergenic Intergenic -283096 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 508.666-5 chr17 61052265 61052900 + 1.33333 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 315122 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 226.499 chr17 18113013 18113182 + 1.33333 NA intron (NM_016239, intron 1 of 64) AluSx|SINE|Alu 4341 NM_016239 51168 Hs.462390 NM_016239 ENSG00000091536 MYO15A DFNB3|MYO15 myosin XVA protein-coding 218.667-39 chr8 136644758 136645053 + 1.33333 NA intron (NR_147196, intron 2 of 5) L2c|LINE|L2 114107 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 315.333-9 chr14 50419679 50419993 + 1.33333 NA 3' UTR (NM_006575, exon 32 of 32) 3' UTR (NM_006575, exon 32 of 32) -22538 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 222.667-9 chr12 88218619 88218982 + 1.33333 NA Intergenic L1PA15|LINE|L1 76493 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 318.833-6 chr6 53079821 53080131 + 1.33333 NA intron (NM_033481, intron 5 of 12) intron (NM_033481, intron 5 of 12) 9003 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 163.333-4 chr1 237597758 237597948 + 1.33333 NA intron (NM_001035, intron 34 of 104) L1MA6|LINE|L1 126734 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 222.166-2 chr8 117323876 117324322 + 1.33333 NA Intergenic L1MB7|LINE|L1 189104 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 293.834-4 chr20 44130999 44131479 + 1.33333 NA intron (NM_020433, intron 2 of 5) MLT1F2|LTR|ERVL-MaLR 55949 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 276.667-17 chr3 99460795 99461144 + 1.33333 NA Intergenic L1MEi|LINE|L1 -177625 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 186-28 chr21 35974898 35975148 + 1.33333 NA intron (NR_110418, intron 4 of 5) intron (NR_110418, intron 4 of 5) 29644 NR_110418 101928269 Hs.589909 NR_110418 LOC101928269 - uncharacterized LOC101928269 ncRNA 277.333-18 chr14 79878898 79879268 + 1.33333 NA Intergenic Intergenic -332336 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 199-25 chr2 124493088 124493274 + 1.33333 NA intron (NM_001367498, intron 7 of 23) L1MA9|LINE|L1 467894 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 271.666-10 chr8 125113745 125113969 + 1.33333 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 21997 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 184.333-27 chr4 67243616 67243877 + 1.33333 NA Intergenic L1M6|LINE|L1 178254 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 290.333-22 chr8 40632109 40632356 + 1.33333 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) 265594 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 339.834-5 chr5 43040432 43040719 + 1.33333 NA promoter-TSS (NM_001014279) promoter-TSS (NM_001014279) -230 NM_001014279 389289 Hs.529385 NM_001014279 ENSG00000177721 ANXA2R AX2R|AXIIR|C5orf39 annexin A2 receptor protein-coding 286.333-11 chr5 31062739 31063095 + 1.33333 NA Intergenic Intergenic -130769 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 257-2 chr1 197524860 197525479 + 1.33333 NA intron (NR_125340, intron 17 of 19) intron (NR_125340, intron 17 of 19) 250311 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 248.667-26 chr4 60260801 60261106 + 1.33333 NA Intergenic MER20|DNA|hAT-Charlie -661666 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 319.333-16 chr8 22475954 22476452 + 1.33333 NA intron (NM_005605, intron 3 of 13) intron (NM_005605, intron 3 of 13) 35233 NM_005605 5533 Hs.731683 NM_005605 ENSG00000120910 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3 catalytic subunit gamma protein-coding 201.333-34 chr3 40899349 40899582 + 1.33333 NA Intergenic Intergenic -300040 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 186.5-13 chr17 71982330 71982507 + 1.33333 NA Intergenic Intergenic 43561 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 443.667 chr1 37595717 37596509 + 1.33333 NA promoter-TSS (NM_001323623) promoter-TSS (NM_001323623) -128 NM_001323624 29889 Hs.75528 NM_013285 ENSG00000134697 GNL2 HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2 G protein nucleolar 2 protein-coding 429.333-6 chr8 80773349 80773710 + 1.33333 NA intron (NM_001033723, intron 2 of 8) L1MD1|LINE|L1 100939 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 573 chr1 198771364 198771969 + 1.33333 NA Intergenic Intergenic 87316 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 166.333-37 chr3 1358228 1358443 + 1.33333 NA intron (NM_001289080, intron 12 of 22) intron (NM_001289080, intron 12 of 22) 265311 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 203-12 chr15 93703647 93703833 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -152820 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 343.667-13 chr3 154095766 154096242 + 1.33333 NA intron (NR_037901, intron 2 of 3) intron (NR_037901, intron 2 of 3) -24999 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 214-46 chr6 66358507 66358790 + 1.33333 NA Intergenic Intergenic 570769 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 294.999-4 chrX 97075511 97075806 + 1.33333 NA intron (NM_007309, intron 19 of 26) intron (NM_007309, intron 19 of 26) 191750 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 377.166-3 chr4 90857631 90858139 + 1.33333 NA intron (NM_001145065, intron 8 of 10) L1MA9|LINE|L1 622854 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 192.166-2 chr4 123329189 123329440 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -67481 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 236-14 chr4 41725224 41725424 + 1.33333 NA Intergenic Tigger16a|DNA|TcMar-Tigger 23646 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 237.5-37 chr7 17640305 17640545 + 1.33333 NA Intergenic Intergenic -81516 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 262.166 chr1 172744754 172745115 + 1.33333 NA Intergenic Intergenic 85831 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 287.167-10 chr4 98151182 98151568 + 1.33333 NA Intergenic 7SK|RNA|RNA -7899 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 424.666-2 chr12 3301907 3302390 + 1.33333 NA intron (NR_148995, intron 7 of 11) MIRb|SINE|MIR 63974 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 294-5 chr14 34133641 34133981 + 1.33333 NA Intergenic Intergenic -182737 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 321.333-4 chr13 52040848 52041163 + 1.33333 NA intron (NM_001365552, intron 23 of 23) L1MEd|LINE|L1 16314 NM_021645 9724 Hs.512963 NM_021645 ENSG00000253797 UTP14C 2700066J21Rik|KIAA0266|UTP14B UTP14C small subunit processome component protein-coding 225.333-7 chr10 72597337 72597694 + 1.33333 NA intron (NM_006077, intron 1 of 11) Tigger4|DNA|TcMar-Tigger 28564 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 231-15 chr2 11573583 11573862 + 1.33333 NA intron (NM_014668, intron 4 of 32) intron (NM_014668, intron 4 of 32) 31036 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 263.666 chr12 55745319 55745545 + 1.33333 NA intron (NM_005811, intron 1 of 2) intron (NM_005811, intron 1 of 2) 2310 NM_005811 10220 Hs.600883 NM_005811 ENSG00000135414 GDF11 BMP-11|BMP11 growth differentiation factor 11 protein-coding 240.666-2 chr10 126686853 126687128 + 1.33333 NA Intergenic Intergenic -16480 NM_001350921 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 218.166-3 chr5 36496137 36496464 + 1.33333 NA Intergenic MIR3|SINE|MIR -110055 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 181.666-4 chr20 11641484 11641690 + 1.33333 NA Intergenic Intergenic 229128 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 220.499 chr5 164453354 164453519 + 1.33333 NA intron (NR_105064, intron 2 of 3) intron (NR_105064, intron 2 of 3) 13966 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 203.666-2 chr2 35881251 35881589 + 1.33333 NA Intergenic Intergenic 410015 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 327.667-11 chr4 55023939 55024302 + 1.33333 NA Intergenic L1MEd|LINE|L1 101475 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 253.667-2 chr1 115908259 115908511 + 1.33333 NA Intergenic Tigger15a|DNA|TcMar-Tigger -10991 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 272-21 chr21 14485996 14486265 + 1.33333 NA intron (NM_022136, intron 7 of 7) intron (NM_022136, intron 7 of 7) 60185 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 265-6 chr17 56130698 56130998 + 1.33333 NA Intergenic Intergenic -22627 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 176-27 chr4 25945681 25946030 + 1.33333 NA Intergenic L1MC5a|LINE|L1 31663 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 166-13 chr11 22859180 22859353 + 1.33333 NA intron (NM_001195637, intron 2 of 3) intron (NM_001195637, intron 2 of 3) 1208 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 264.167-12 chr16 59432757 59433168 + 1.33333 NA Intergenic Intergenic 322229 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 415.334-10 chr4 71490320 71490785 + 1.33333 NA intron (NM_003759, intron 12 of 22) intron (NM_003759, intron 12 of 22) 151499 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 197.667-7 chr10 80856586 80856897 + 1.33333 NA Intergenic Intergenic 206944 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 402.5 chr12 123365315 123366142 + 1.33333 NA promoter-TSS (NR_107039) promoter-TSS (NR_107039) 780 NR_157805 112268105 Hs.7012 NR_157805 SBNO1-AS1 - SBNO1 antisense RNA 1 ncRNA 308-14 chr3 35439856 35440259 + 1.33333 NA Intergenic MER61E|LTR|ERV1 -46034 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 228.5-26 chr4 164779690 164780011 + 1.33333 NA intron (NM_001352885, intron 2 of 2) intron (NM_001352885, intron 2 of 2) 25719 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 187.334-5 chr2 197130059 197130527 + 1.33333 NA intron (NM_153697, intron 4 of 9) intron (NM_153697, intron 4 of 9) -67698 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 226-10 chr10 107268254 107268500 + 1.33333 NA Intergenic Intergenic -103671 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 271.666-2 chr1 152480226 152480496 + 1.33333 NA Intergenic Intergenic -30442 NM_178438 254910 Hs.516410 NM_178438 ENSG00000186207 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 311.333-17 chr21 28955233 28955529 + 1.33333 NA intron (NM_015565, intron 16 of 29) L1MA4|LINE|L1 37496 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 205.333-46 chr8 137543771 137543973 + 1.33333 NA Intergenic L1M4|LINE|L1 -130284 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 286.833 chr1 209656159 209656443 + 1.33333 NA Intergenic Intergenic -3876 NM_000228 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 385-10 chr9 37586593 37586951 + 1.33333 NA Intergenic L1MA3|LINE|L1 5825 NM_001001790 401505 Hs.130774 NM_001001790 ENSG00000175768 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 protein-coding 232.834 chr1 50788089 50788416 + 1.33333 NA intron (NM_007051, intron 3 of 18) intron (NM_007051, intron 3 of 18) 172015 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 321.333-10 chr22 25705120 25705400 + 1.33333 NA intron (NM_001362778, intron 14 of 19) HAL1ME|LINE|L1 -36928 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 209.333-44 chr9 110685691 110685882 + 1.33333 NA intron (NM_001166281, intron 2 of 11) MLT1D-int|LTR|ERVL-MaLR 16995 NM_005592 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 268-16 chr15 57139549 57139763 + 1.33333 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -79774 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 217.333-30 chr5 50986187 50986480 + 1.33333 NA Intergenic Intergenic -16146 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 197.667-13 chr11 104254290 104254537 + 1.33333 NA Intergenic MIR3|SINE|MIR -90266 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 339.333-7 chr17 51285611 51286106 + 1.33333 NA intron (NM_016001, intron 10 of 13) MER44A|DNA|TcMar-Tigger 25312 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 183.333-36 chr2 118751416 118751716 + 1.33333 NA Intergenic L1ME4b|LINE|L1 96617 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 408.333-7 chr6 150004883 150005679 + 1.33333 NA promoter-TSS (NR_024045) promoter-TSS (NR_024045) -137 NR_024045 646024 Hs.560537 NR_024045 ENSG00000218358 RAET1K - retinoic acid early transcript 1K pseudogene pseudo 196.333-23 chr2 76737838 76738234 + 1.33333 NA Intergenic Intergenic -247929 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 421.833-4 chr3 13657585 13658223 + 1.33333 NA intron (NR_027103, intron 1 of 5) intron (NR_027103, intron 1 of 5) 7183 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 209.666 chr10 69262081 69262335 + 1.33333 NA intron (NM_025130, intron 16 of 17) L1ME4c|LINE|L1 -7792 NM_033498 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 279.666-12 chr9 31293413 31293719 + 1.33333 NA Intergenic L1PA16|LINE|L1 87924 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 309.667-23 chr8 120423718 120424093 + 1.33333 NA intron (NM_014078, intron 4 of 6) L1MEd|LINE|L1 21245 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 214.833-2 chr1 68450803 68451110 + 1.33333 NA Intergenic Intergenic -1002 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 276.667-15 chr20 10090745 10091168 + 1.33333 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 55969 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 231.333-5 chr1 74330311 74330599 + 1.33333 NA intron (NM_015978, intron 5 of 24) MER34A1|LTR|ERV1 95068 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 195.334-3 chr12 103267746 103267973 + 1.33333 NA non-coding (NR_103526, exon 8 of 11) non-coding (NR_103526, exon 8 of 11) 116017 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 248-14 chr11 123553774 123554004 + 1.33333 NA intron (NM_020716, intron 1 of 19) intron (NM_020716, intron 1 of 19) -6373 NM_001286564 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 286.666-11 chr6 159726747 159727066 + 1.33333 NA promoter-TSS (NM_001270532) promoter-TSS (NM_001270532) 44 NM_001322820 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 318.5-17 chr8 118514072 118514585 + 1.33333 NA intron (NM_001101676, intron 2 of 4) MIRc|SINE|MIR -106673 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 224-16 chr15 72835089 72835309 + 1.33333 NA Intergenic MER5A1|DNA|hAT-Charlie -51441 NM_001365226 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 239.333-27 chr6 51231685 51231999 + 1.33333 NA Intergenic Intergenic -390028 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 310.999 chr14 53531888 53532204 + 1.33333 NA Intergenic Intergenic 378692 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 202.666-4 chr11 77712797 77713000 + 1.33333 NA intron (NM_016578, intron 5 of 15) L1MC4a|LINE|L1 -75092 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 184.666-7 chr9 77320745 77320955 + 1.33333 NA intron (NM_001018038, intron 42 of 68) intron (NM_001018038, intron 42 of 68) -126799 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 217.333-33 chr5 128179138 128179456 + 1.33333 NA intron (NM_001046, intron 22 of 26) L1MC4|LINE|L1 95531 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 189.166-2 chr8 33104929 33105155 + 1.33333 NA Intergenic Intergenic 368104 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 358.5-5 chr12 7805377 7806066 + 1.33333 NA Intergenic Intergenic 16319 NM_001297698 79923 Hs.635882 NM_024865 ENSG00000111704 NANOG - Nanog homeobox protein-coding 277-28 chr7 4100276 4100715 + 1.33333 NA intron (NM_152744, intron 22 of 44) MLT1A0|LTR|ERVL-MaLR -29190 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 457-2 chr3 159855028 159855589 + 1.33333 NA intron (NM_001197109, intron 1 of 6) intron (NM_001197109, intron 1 of 6) 15447 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 255.499 chr2 102442599 102442824 + 1.33333 NA intron (NM_003853, intron 7 of 11) intron (NM_003853, intron 7 of 11) 10422 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 174.833-14 chr2 171922363 171922532 + 1.33333 NA promoter-TSS (NM_003642) promoter-TSS (NM_003642) -14 NM_003642 8520 Hs.632532 NM_003642 ENSG00000128708 HAT1 KAT1 histone acetyltransferase 1 protein-coding 185.333-8 chr11 61695109 61695339 + 1.33333 NA intron (NM_006133, intron 1 of 19) intron (NM_006133, intron 1 of 19) 14833 NM_006133 747 Hs.241564 NM_006133 ENSG00000134780 DAGLA C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR diacylglycerol lipase alpha protein-coding 172-33 chr3 77726944 77727135 + 1.33333 NA Intergenic Intergenic 321924 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 202.667-20 chr2 118280770 118281035 + 1.33333 NA Intergenic Intergenic -94516 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 422.332 chr1 35839327 35839685 + 1.33333 NA intron (NR_146062, intron 13 of 19) MIR|SINE|MIR -30302 NM_001317123 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute RISC component 1 protein-coding 214-6 chr10 102663822 102664165 + 1.33333 NA Intergenic Intergenic 19498 NM_030912 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 282.5-22 chrX 149451718 149451978 + 1.33333 NA Intergenic L1ME4a|LINE|L1 53458 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 252-2 chr1 51882968 51883300 + 1.33333 NA Intergenic L2c|LINE|L2 -4197 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 230.666-4 chr6 12755400 12755675 + 1.33333 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) 36838 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 193.333-30 chr2 78099458 78099670 + 1.33333 NA intron (NR_110287, intron 3 of 5) intron (NR_110287, intron 3 of 5) 10834 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 382.667-6 chr2 145752333 145752715 + 1.33333 NA Intergenic Intergenic -834533 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 446-6 chr3 195108551 195109111 + 1.33333 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) 14243 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 197.166-3 chr18 2338463 2338666 + 1.33333 NA Intergenic Intergenic 232941 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 208.166-3 chr6 35256293 35256537 + 1.33333 NA Intergenic Charlie2b|DNA|hAT-Charlie -3320 NM_003427 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 419.999-2 chr4 122923787 122924143 + 1.33333 NA promoter-TSS (NM_198041) promoter-TSS (NM_198041) 887 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 311.333-8 chr14 61862351 61862693 + 1.33333 NA intron (NM_001367656, intron 1 of 7) L1MC1|LINE|L1 49819 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 238.333-3 chr1 166076905 166077478 + 1.33333 NA intron (NR_163271, intron 1 of 2) intron (NR_163271, intron 1 of 2) 77607 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 287-20 chr3 47588212 47588507 + 1.33333 NA intron (NM_003074, intron 27 of 27) intron (NM_003074, intron 27 of 27) -8119 NM_001206942 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 216.833-7 chr12 70719771 70720329 + 1.33333 NA intron (NM_130846, intron 2 of 9) intron (NM_130846, intron 2 of 9) 34558 NM_130846 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 346.166-3 chr14 88236066 88236612 + 1.33333 NA intron (NM_138317, intron 3 of 6) AluJr|SINE|Alu 34572 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 246.167-19 chr2 77380814 77381271 + 1.33333 NA intron (NR_146416, intron 1 of 1) (TAATTTT)n|Simple_repeat|Simple_repeat 141334 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 164.5-20 chr16 68567843 68568006 + 1.33333 NA TTS (NR_130978) TTS (NR_130978) 28633 NM_133458 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 284.166-4 chr17 48911144 48911428 + 1.33333 NA intron (NM_023079, intron 2 of 6) intron (NM_023079, intron 2 of 6) -2303 NR_135674 105371814 Hs.655254 NR_135674 ENSG00000248278 LOC105371814 - uncharacterized LOC105371814 ncRNA 228.666-16 chr9 132965678 132965949 + 1.33333 NA intron (NM_004188, intron 1 of 10) MLT1C|LTR|ERVL-MaLR -12881 NM_001135031 8328 Hs.553160 NM_004188 ENSG00000165702 GFI1B BDPLT17|ZNF163B growth factor independent 1B transcriptional repressor protein-coding 395.333-8 chr3 106813584 106814133 + 1.33333 NA Intergenic Intergenic 426780 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 239.667-6 chr1 172359747 172359965 + 1.33333 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -60829 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 337.333-5 chr14 63789013 63789585 + 1.33333 NA Intergenic HAL1|LINE|L1 -61234 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 182.833-28 chr5 38270817 38271015 + 1.33333 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) 12357 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 280.333-29 chr9 35736057 35736321 + 1.33333 NA TTS (NM_001330660) TTS (NM_001330660) 3267 NR_106912 102466201 NR_106912 ENSG00000273945 MIR6853 hsa-mir-6853 microRNA 6853 ncRNA 257-19 chr20 43408905 43409261 + 1.33333 NA Intergenic L1M3f|LINE|L1 -48813 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 298.666-3 chr10 62707681 62707922 + 1.33333 NA Intergenic Intergenic -96919 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 254.166 chr10 104105202 104105748 + 1.33333 NA Intergenic Intergenic -16583 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 242.666-9 chr17 7572371 7572765 + 1.33333 NA promoter-TSS (NM_001416) promoter-TSS (NM_001416) -257 NM_001416 1973 Hs.129673 NM_001416 ENSG00000161960 EIF4A1 DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I eukaryotic translation initiation factor 4A1 protein-coding 250-15 chr2 141011113 141011415 + 1.33333 NA intron (NM_018557, intron 14 of 90) intron (NM_018557, intron 14 of 90) -424579 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 432.166 chr15 40338202 40338690 + 1.33333 NA intron (NM_207380, intron 5 of 10) intron (NM_207380, intron 5 of 10) 2521 NM_207380 388115 Hs.32433 NM_207380 ENSG00000188549 CCDC9B C15orf52 coiled-coil domain containing 9B protein-coding 441.167-2 chr16 52191119 52191931 + 1.33333 NA Intergenic Intergenic -67039 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 348.334 chr1 95035412 95035820 + 1.33333 NA intron (NR_131032, intron 1 of 2) intron (NR_131032, intron 1 of 2) -25980 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 357.833-8 chr3 171811786 171812376 + 1.33333 NA Intergenic AluSx1|SINE|Alu -1598 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 281.667-8 chr14 35067964 35068344 + 1.33333 NA intron (NM_001079519, intron 4 of 6) intron (NM_001079519, intron 4 of 6) -12927 NR_110415 101927178 Hs.617139 NR_110415 ENSG00000151327 LOC101927178 - uncharacterized LOC101927178 ncRNA 178.833-4 chr10 66192532 66192932 + 1.33333 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 621307 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 276-23 chr6 49375875 49376139 + 1.33333 NA Intergenic Intergenic 87246 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 232-4 chr10 23700930 23701177 + 1.33333 NA intron (NM_001098500, intron 1 of 18) MIR|SINE|MIR 6326 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 221.667-41 chr6 76683921 76684360 + 1.33333 NA Intergenic Intergenic -90517 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 508.666-2 chr12 40970282 40970755 + 1.33333 NA intron (NM_001843, intron 15 of 23) intron (NM_001843, intron 15 of 23) 62161 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 568.666 chr16 2906798 2907937 + 1.33333 NA Intergenic LTR2C|LTR|ERV1 -4612 NM_020912 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 296.667-7 chr14 67818641 67819055 + 1.33333 NA promoter-TSS (NM_001321819) promoter-TSS (NM_001321819) -931 NM_001321810 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 198.167-7 chr11 14622110 14622413 + 1.33333 NA intron (NM_148976, intron 1 of 10) ERV3-16A3_I-int|LTR|ERVL 21373 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 234.333-17 chr2 134083221 134083402 + 1.33333 NA Intergenic Intergenic -36624 NM_001371457 325.999 chr1 16237225 16237515 + 1.33333 NA promoter-TSS (NM_030907) promoter-TSS (NM_030907) -187 NM_030907 79363 Hs.546430 NM_030907 ENSG00000132881 CPLANE2 C1orf89|RSG1 ciliogenesis and planar polarity effector 2 protein-coding 174.167-33 chr4 76076930 76077244 + 1.33333 NA intron (NM_001130017, intron 2 of 9) L1MB7|LINE|L1 2392 NM_001130016 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 284.834 chr1 218465861 218466270 + 1.33333 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 23439 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 174.333-40 chr8 108526103 108526360 + 1.33333 NA Intergenic AluSp|SINE|Alu 82607 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 170.167-33 chr4 73257329 73257702 + 1.33333 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) 1283 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 553.167-3 chr8 127725654 127726372 + 1.33333 NA intron (NR_117102, intron 1 of 3) intron (NR_117102, intron 1 of 3) 7954 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 414.333-3 chr22 28608403 28608838 + 1.33333 NA intron (NM_001145418, intron 2 of 22) L1M4|LINE|L1 71245 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 179.833-29 chr7 6051619 6051839 + 1.33333 NA intron (NM_001134335, intron 2 of 14) intron (NM_001134335, intron 2 of 14) 7446 NM_014413 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 227.833-16 chr5 33324941 33325355 + 1.33333 NA Intergenic L3|LINE|CR1 95413 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 396.167-7 chr2 223762836 223763421 + 1.33333 NA intron (NR_110905, intron 5 of 5) intron (NR_110905, intron 5 of 5) 74454 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 337.333-4 chr1 113389875 113390342 + 1.33333 NA promoter-TSS (NM_152900) promoter-TSS (NM_152900) -407 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 164.166-3 chrX 53482199 53482347 + 1.33333 NA Intergenic LTR41|LTR|ERVL -47897 NM_004493 3028 Hs.171280 NM_004493 ENSG00000072506 HSD17B10 17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1 hydroxysteroid 17-beta dehydrogenase 10 protein-coding 207.334-2 chr10 133318781 133319230 + 1.33333 NA Intergenic Intergenic -6668 NR_046330 10844 Hs.523370 NM_006659 ENSG00000130640 TUBGCP2 ALP4|GCP-2|GCP2|Grip103|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97 tubulin gamma complex associated protein 2 protein-coding 317.333-4 chr13 70899336 70899673 + 1.33333 NA Intergenic Intergenic -115637 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 172.333-47 chr6 53184657 53184856 + 1.33333 NA Intergenic L2a|LINE|L2 -35915 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 295.999 chr6 147308657 147308958 + 1.33333 NA intron (NM_139244, intron 9 of 25) Charlie7|DNA|hAT-Charlie -104193 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 254.833-20 chr7 31182866 31183327 + 1.33333 NA Intergenic L1PA15|LINE|L1 130635 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 364.666-11 chr9 29540458 29540806 + 1.33333 NA Intergenic Intergenic -327031 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 279.333-14 chr2 215270723 215271096 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -41150 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 183.5-40 chr5 122582759 122583027 + 1.33333 NA non-coding (NR_134281, exon 1 of 2) non-coding (NR_134281, exon 1 of 2) 1707 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 199.5-8 chr11 104600899 104601255 + 1.33333 NA intron (NR_120585, intron 1 of 3) L1PB1|LINE|L1 8225 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 353.166-4 chr4 57422979 57423426 + 1.33333 NA Intergenic THE1D|LTR|ERVL-MaLR -2670 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 360.666-5 chr5 150314944 150315284 + 1.33333 NA Intergenic L1MB5|LINE|L1 -12209 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 201.667-13 chr15 76931476 76931756 + 1.33333 NA promoter-TSS (NM_002902) promoter-TSS (NM_002902) -133 NM_002902 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 309.666-8 chr8 119710942 119711267 + 1.33333 NA Intergenic AluSx1|SINE|Alu -37714 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 356.333-3 chr15 59851426 59852041 + 1.33333 NA Intergenic Intergenic -152578 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 400-7 chr20 22928549 22928995 + 1.33333 NA Intergenic Intergenic -106648 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 329.667-6 chr3 84024466 84024739 + 1.33333 NA Intergenic Intergenic 844973 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 211.666-7 chr7 88627610 88627953 + 1.33333 NA Intergenic Intergenic -131919 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 168.166-3 chrX 11561397 11561617 + 1.33333 NA intron (NR_109776, intron 1 of 14) L1ME4b|LINE|L1 104413 NM_006125 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 318.166 chr20 12604893 12605368 + 1.33333 NA Intergenic ERVL-B4-int|LTR|ERVL 331833 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 308-3 chr10 120825072 120825488 + 1.33333 NA intron (NR_033850, intron 1 of 2) MER94|DNA|hAT-Blackjack 25899 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 264.833-22 chr7 42507927 42508269 + 1.33333 NA Intergenic L1MC4|LINE|L1 198349 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 323.833-6 chr22 24854416 24854705 + 1.33333 NA intron (NM_001098498, intron 5 of 23) AluJr4|SINE|Alu 48339 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 490-2 chr16 79600617 79601235 + 1.33333 NA promoter-TSS (NM_001031804) promoter-TSS (NM_001031804) -189 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 225.667-25 chr20 44093612 44094036 + 1.33333 NA Intergenic L1ME2|LINE|L1 93364 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 396.333-9 chr8 64072974 64073668 + 1.33333 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 295237 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 239-9 chr15 43330396 43330683 + 1.33333 NA promoter-TSS (NM_001159280) promoter-TSS (NM_001159280) 34 NM_014793 9836 Hs.200596 NM_014793 ENSG00000168806 LCMT2 PPM2|TYW4 leucine carboxyl methyltransferase 2 protein-coding 313.5-9 chr16 80660342 80660783 + 1.33333 NA intron (NM_152342, intron 2 of 6) L1MEi|LINE|L1 -87754 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 423.332 chr2 25878945 25879318 + 1.33333 NA promoter-TSS (NM_018263) promoter-TSS (NM_018263) -644 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 238.666-8 chr6 128770675 128771039 + 1.33333 NA Intergenic L1PA15|LINE|L1 -112281 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 247.666 chr1 102674044 102674340 + 1.33333 NA Intergenic MIR|SINE|MIR 434304 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 264.666-5 chr11 100788134 100788345 + 1.33333 NA intron (NM_001367945, intron 2 of 25) intron (NM_001367945, intron 2 of 25) -100284 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 230.333-7 chr12 28460743 28460956 + 1.33333 NA intron (NM_001352082, intron 12 of 13) L1MC4|LINE|L1 -270111 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 216.334-7 chr7 98401190 98401381 + 1.33333 NA promoter-TSS (NM_018842) promoter-TSS (NM_018842) -195 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 215.333-13 chr11 80283438 80283718 + 1.33333 NA Intergenic Intergenic 479225 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 394.667-3 chr14 60250148 60250776 + 1.33333 NA 5' UTR (NM_177951, exon 2 of 4) 5' UTR (NM_177951, exon 2 of 4) 1241 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 179.333-54 chrX 140918485 140918778 + 1.33333 NA Intergenic MER66C|LTR|ERV1 7600 NR_031725 100302169 NR_031725 ENSG00000221081 MIR320D2 MIR320D-2|MIRN320D2|hsa-mir-320d-2|mir-320d-2 microRNA 320d-2 ncRNA 188.5-4 chr1 116101989 116102310 + 1.33333 NA Intergenic L1M5|LINE|L1 -9606 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 412.666 chr17 53195024 53195556 + 1.33333 NA Intergenic Intergenic 209785 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 185.667-40 chr6 42158690 42159171 + 1.33333 NA intron (NM_001319062, intron 1 of 4) intron (NM_001319062, intron 1 of 4) 3524 NM_001370581 114841037 Hs.92858 NM_001370581 LOC114841037 - Uncharacterized protein 114841037 protein-coding 212-45 chr8 69112950 69113126 + 1.33333 NA Intergenic Intergenic -8848 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 180.833-14 chr3 99335792 99335991 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 -302703 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 312.334 chr1 66198385 66198876 + 1.33333 NA intron (NM_001037340, intron 1 of 14) L1PA4|LINE|L1 -133478 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 261.666 chr1 92052133 92052462 + 1.33333 NA intron (NM_173567, intron 5 of 6) intron (NM_173567, intron 5 of 6) 22312 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 218.667-16 chr2 39728830 39729295 + 1.33333 NA Intergenic MLT1N2|LTR|ERVL-MaLR 50196 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 512-6 chr9 128195010 128195591 + 1.33333 NA intron (NM_012127, intron 1 of 16) L1ME4a|LINE|L1 -3196 NM_001257975 25792 Hs.212395 NM_012127 ENSG00000148337 CIZ1 LSFR1|NP94|ZNF356 CDKN1A interacting zinc finger protein 1 protein-coding 288.666-9 chr3 101720188 101720432 + 1.33333 NA Intergenic Intergenic -4304 NM_001303401 79598 Hs.444135 NM_024548 ENSG00000182504 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97 protein-coding 184-41 chr5 86118712 86118933 + 1.33333 NA Intergenic Intergenic -163622 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 385.666-6 chr6 72852663 72853084 + 1.33333 NA intron (NM_001160132, intron 1 of 13) MER63B|DNA|hAT-Blackjack 114880 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 200-23 chr2 79617788 79618006 + 1.33333 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 31462 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 216-7 chr11 80272642 80272945 + 1.33333 NA Intergenic L1MA9|LINE|L1 490010 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 214-49 chr7 157181740 157182066 + 1.33333 NA intron (NM_014671, intron 7 of 22) intron (NM_014671, intron 7 of 22) 42977 NM_014671 9690 Hs.118351 NM_014671 ENSG00000009335 UBE3C HECTH2 ubiquitin protein ligase E3C protein-coding 185.667-35 chr4 69540846 69541078 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -14948 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 298-10 chr2 88038099 88038409 + 1.33333 NA intron (NM_001304526, intron 1 of 3) LTR80A|LTR|ERVL 17529 NM_001304526 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 235.333 chr1 162911146 162911353 + 1.33333 NA Intergenic L1M4|LINE|L1 -42434 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 226-13 chr12 33469494 33469826 + 1.33333 NA Intergenic L1MB7|LINE|L1 -29841 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 211.333-9 chr10 115548415 115548877 + 1.33333 NA intron (NM_207303, intron 25 of 28) intron (NM_207303, intron 25 of 28) 455281 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 243.667-38 chr8 130914919 130915397 + 1.33333 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 125751 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 172.5-28 chr2 231952770 231953055 + 1.33333 NA Intergenic Intergenic -8671 NM_001257282 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 412.333-3 chr12 63276715 63277333 + 1.33333 NA Intergenic Intergenic -124214 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 466.166 chr3 111960343 111961006 + 1.33333 NA intron (NM_001134437, intron 12 of 17) intron (NM_001134437, intron 12 of 17) -18352 NM_001272069 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 389.332 chr19 49606711 49607006 + 1.33333 NA intron (NM_020719, intron 6 of 13) AluSx1|SINE|Alu 15676 NM_020719 57479 Hs.590971 NM_020719 ENSG00000126464 PRR12 KIAA1205 proline rich 12 protein-coding 223.833-8 chr15 64848453 64848894 + 1.33333 NA exon (NM_025201, exon 2 of 6) exon (NM_025201, exon 2 of 6) 6758 NM_025201 80301 Hs.709337 NM_025201 ENSG00000241839 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing O2 protein-coding 224-26 chr20 310443 310702 + 1.33333 NA Intergenic Intergenic 13002 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 266.333-18 chr8 99180720 99181126 + 1.33333 NA intron (NM_017890, intron 16 of 61) intron (NM_017890, intron 16 of 61) 167657 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 401 chr14 64761612 64762124 + 1.33333 NA intron (NM_001024858, intron 31 of 34) intron (NM_001024858, intron 31 of 34) 23818 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 272.833-17 chr6 49669363 49669756 + 1.33333 NA Intergenic L2a|LINE|L2 -32685 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 274.667-27 chr8 124610197 124610572 + 1.33333 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 71261 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 456.332 chr1 27047971 27048395 + 1.33333 NA Intergenic MSTC|LTR|ERVL-MaLR -35333 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 TENT5B FAM46B terminal nucleotidyltransferase 5B protein-coding 402-2 chr10 19520023 19520506 + 1.33333 NA intron (NM_001142308, intron 31 of 39) intron (NM_001142308, intron 31 of 39) 208286 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 197.167-11 chr14 36868264 36868584 + 1.33333 NA intron (NM_001171170, intron 2 of 10) intron (NM_001171170, intron 2 of 10) 83967 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 474.667-6 chr3 135895001 135895584 + 1.33333 NA Intergenic Intergenic -70436 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 314.834-2 chr2 234840237 234840540 + 1.33333 NA Intergenic MLT2A2|LTR|ERVL -111629 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 472.833-5 chr8 106336846 106337603 + 1.33333 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 67046 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 279.166-6 chr8 4480260 4480591 + 1.33333 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 514489 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 389.833-2 chr10 66347216 66347820 + 1.33333 NA intron (NM_001127384, intron 12 of 17) AluJr4|SINE|Alu -578518 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 216.333-3 chr1 111556189 111556440 + 1.33333 NA intron (NM_001370216, intron 1 of 7) L1MB3|LINE|L1 7689 NM_001081976 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 209.833-16 chr2 214009249 214009454 + 1.33333 NA intron (NR_047660, intron 11 of 14) L1MEf|LINE|L1 251284 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 629.667-3 chr4 133320254 133321561 + 1.33333 NA Intergenic Intergenic 171613 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 355.333-4 chr20 12914301 12914755 + 1.33333 NA intron (NR_109868, intron 6 of 11) intron (NR_109868, intron 6 of 11) 22435 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 290.5-10 chr19 40444342 40444855 + 1.33333 NA promoter-TSS (NM_203344) promoter-TSS (NM_203344) -263 NM_203344 29946 Hs.515412 NM_013368 ENSG00000167565 SERTAD3 RBT1 SERTA domain containing 3 protein-coding 234.834-2 chr12 85033326 85033699 + 1.33333 NA intron (NM_001100917, intron 1 of 8) intron (NM_001100917, intron 1 of 8) 2765 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 310.333-2 chr1 223145343 223145606 + 1.33333 NA Intergenic L2a|LINE|L2 -2226 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 184.666-3 chr14 52292420 52292621 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -21792 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 354.834 chr2 17298869 17299260 + 1.33333 NA Intergenic Intergenic 219376 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 433.166-4 chr3 94234012 94234593 + 1.33333 NA Intergenic Intergenic 171241 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 399.999-2 chr5 61234453 61234888 + 1.33333 NA Intergenic Intergenic 30259 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 475.001-2 chr8 145040045 145040642 + 1.33333 NA Intergenic L1MCa|LINE|L1 -12124 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 296.499 chr1 67076581 67076827 + 1.33333 NA Intergenic Arthur1B|DNA|hAT-Tip100 -22556 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 261.5-18 chr17 60529915 60530307 + 1.33333 NA Intergenic L1M1|LINE|L1 -3869 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 320-21 chr9 74955821 74956199 + 1.33333 NA intron (NR_121183, intron 1 of 4) L1MEc|LINE|L1 3045 NR_121183 101927380 Hs.257556 NR_121183 CARNMT1-AS1 C9orf41-AS1 CARNMT1 antisense RNA 1 ncRNA 426-2 chr1 213287947 213288651 + 1.33333 NA Intergenic Intergenic 237058 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 303.167-6 chr7 54711929 54712454 + 1.33333 NA Intergenic Intergenic 47020 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 277.834-3 chr5 30897704 30898067 + 1.33333 NA Intergenic Intergenic -295801 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 298.667-8 chr18 2360123 2360711 + 1.33333 NA Intergenic Intergenic 211088 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 304.667-16 chr5 171882468 171882923 + 1.33333 NA intron (NM_012300, intron 6 of 12) L1MC1|LINE|L1 96823 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 196-42 chr7 64307259 64307461 + 1.33333 NA Intergenic Intergenic -6513 NM_001294255 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 263.834-5 chr2 88580849 88581244 + 1.33333 NA intron (NM_004836, intron 10 of 16) intron (NM_004836, intron 10 of 16) 42326 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 247.666-8 chr5 98769254 98769443 + 1.33333 NA promoter-TSS (NM_001366509) promoter-TSS (NM_001366509) -88 NM_001366511 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 299.333-6 chr12 65952044 65952487 + 1.33333 NA intron (NM_003483, intron 4 of 4) intron (NM_003483, intron 4 of 4) -69940 NR_158985 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 226.667-23 chr2 156892540 156892824 + 1.33333 NA Intergenic Intergenic -365023 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 308.333-5 chr12 68317225 68317469 + 1.33333 NA intron (NM_001368282, intron 6 of 13) intron (NM_001368282, intron 6 of 13) 15015 NM_001368282 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 397.166 chr17 65794675 65795106 + 1.33333 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 31561 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 180.334-4 chr6 76908111 76908479 + 1.33333 NA Intergenic L1MB3|LINE|L1 -314672 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 333.333-7 chr16 29714939 29715431 + 1.33333 NA Intergenic HUERS-P3b-int|LTR|ERV1 30805 NM_175900 283897 Hs.331095 NM_175900 ENSG00000185905 C16orf54 - chromosome 16 open reading frame 54 protein-coding 179-46 chrX 106170107 106170459 + 1.33333 NA intron (NM_001171020, intron 1 of 3) intron (NM_001171020, intron 1 of 3) 1978 NM_152423 139221 Hs.592221 NM_152423 ENSG00000157502 PWWP3B MUM1L1 PWWP domain containing 3B protein-coding 337.833-7 chr2 228804483 228804777 + 1.33333 NA Intergenic Intergenic -193235 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 177.333-40 chr8 126679865 126680026 + 1.33333 NA Intergenic Intergenic -121467 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 220.833-23 chr7 127253315 127253614 + 1.33333 NA promoter-TSS (NR_163849) promoter-TSS (NR_163849) -523 NM_001371087 358.833-2 chr14 75022604 75023158 + 1.33333 NA exon (NM_001040108, exon 11 of 13) exon (NM_001040108, exon 11 of 13) 19960 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 198-3 chr1 146036761 146036969 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -15043 NM_213653 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 166-5 chr1 215610732 215610998 + 1.33333 NA intron (NM_001319294, intron 14 of 17) MIR|SINE|MIR 43561 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 336.5-2 chr1 57589907 57590293 + 1.33333 NA intron (NM_001353980, intron 4 of 5) MLT1B|LTR|ERVL-MaLR -165179 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 200-16 chr14 75494041 75494261 + 1.33333 NA Intergenic MIRb|SINE|MIR -28318 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 175.667-56 chr9 130828436 130828689 + 1.33333 NA intron (NM_007313, intron 1 of 10) HAL1ME|LINE|L1 -6692 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 289.333-22 chr4 167787223 167787538 + 1.33333 NA Intergenic Intergenic -305157 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 196-46 chrX 146223883 146224123 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR -196131 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 279.667-5 chr12 11633336 11633743 + 1.33333 NA Intergenic Intergenic -16315 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 276.999-3 chrX 45806790 45807013 + 1.33333 NA Intergenic Intergenic 44589 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 334.667-16 chr9 94002722 94003238 + 1.33333 NA Intergenic L1ME2|LINE|L1 -27833 NM_001253830 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 240.666-6 chr19 35692682 35692939 + 1.33333 NA Intergenic L2a|LINE|L2 -11748 NM_001316902 27033 Hs.99430 NM_014383 ENSG00000011590 ZBTB32 FAXF|FAZF|Rog|TZFP|ZNF538 zinc finger and BTB domain containing 32 protein-coding 304-7 chr12 63907383 63907796 + 1.33333 NA intron (NM_001346201, intron 1 of 21) L1ME1|LINE|L1 62889 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 417.333-10 chr6 150016781 150017133 + 1.33333 NA Intergenic Intergenic 8575 NM_130900 154064 Hs.558659 NM_130900 ENSG00000155918 RAET1L ULBP6 retinoic acid early transcript 1L protein-coding 362.333-10 chr20 817797 818384 + 1.33333 NA Intergenic Intergenic -15625 NM_001289145 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 229.666-5 chr22 41162529 41162902 + 1.33333 NA intron (NM_001429, intron 20 of 30) intron (NM_001429, intron 20 of 30) 34786 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 271.334-10 chr2 181077079 181077338 + 1.33333 NA Intergenic Intergenic -46629 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 306.666-4 chr7 70716184 70716437 + 1.33333 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -415834 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 312.833-4 chr18 25062922 25063168 + 1.33333 NA intron (NM_001308225, intron 6 of 6) intron (NM_001308225, intron 6 of 6) -75066 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 299.666-8 chr7 109844207 109844633 + 1.33333 NA Intergenic Intergenic 115793 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 337.999 chr12 13589120 13589435 + 1.33333 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -212532 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 263.333-8 chr14 82875034 82875506 + 1.33333 NA Intergenic MSTD-int|LTR|ERVL-MaLR 232638 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 209-32 chr7 6281369 6281768 + 1.33333 NA Intergenic AluSz|SINE|Alu -8944 NM_001367580 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 361.999 chr3 134327358 134327782 + 1.33333 NA Intergenic Intergenic 13994 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 221.333-13 chr2 128372404 128372611 + 1.33333 NA Intergenic Intergenic -53639 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 360.666-3 chr4 91264721 91265091 + 1.33333 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 1012396 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 195.666 chr11 114332122 114332313 + 1.33333 NA Intergenic Intergenic 36404 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 394.333-7 chr9 109335411 109335825 + 1.33333 NA Intergenic MER103C|DNA|hAT-Charlie -14654 NM_018424 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 214-22 chr17 8233315 8233514 + 1.33333 NA intron (NR_046431, intron 10 of 21) AluJb|SINE|Alu -9371 NR_026951 284029 Hs.121692 NM_173621 ENSG00000178977 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 377.167-4 chr12 575883 576511 + 1.33333 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 10289 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 164.667-29 chr2 172469691 172469968 + 1.33333 NA intron (NM_001316306, intron 4 of 25) intron (NM_001316306, intron 4 of 25) -3807 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 231.666-3 chr11 47670884 47671087 + 1.33333 NA intron (NM_024783, intron 14 of 18).2 AluJb|SINE|Alu -28331 NM_001317232 23788 Hs.269944 NM_014342 ENSG00000109919 MTCH2 HSPC032|MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 235-36 chrX 21973170 21973529 + 1.33333 NA intron (NM_004595, intron 4 of 10) AluSx|SINE|Alu 32640 NM_004595 6611 Hs.724874 NM_004595 ENSG00000102172 SMS MRSR|SPMSY|SRS|SpS spermine synthase protein-coding 198.5-21 chr2 2568369 2568590 + 1.33333 NA Intergenic L2a|LINE|L2 -237204 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 261.5-20 chr18 56748483 56748814 + 1.33333 NA intron (NM_015285, intron 14 of 27) intron (NM_015285, intron 14 of 27) 97263 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 192-25 chr3 62904873 62905080 + 1.33333 NA Intergenic Intergenic -29560 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 177.833-32 chr6 125119608 125119852 + 1.33333 NA Intergenic MER57-int|LTR|ERV1 -34043 NM_001003396 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 363.666-6 chr7 113214012 113214545 + 1.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -95696 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 190.333-40 chr8 66060734 66060935 + 1.33333 NA intron (NR_146171, intron 4 of 6) L2a|LINE|L2 39281 NR_146171 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 381.999-3 chr8 121393744 121394129 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -245410 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 232.666-6 chr2 23684878 23685224 + 1.33333 NA intron (NM_052920, intron 6 of 13) intron (NM_052920, intron 6 of 13) 242072 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 303.167-7 chr8 126534781 126535027 + 1.33333 NA Intergenic MIRb|SINE|MIR 23574 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 200.666-5 chr14 85496770 85496982 + 1.33333 NA Intergenic Charlie2b|DNA|hAT-Charlie -33149 NR_144387 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 200-38 chr7 8062979 8063152 + 1.33333 NA intron (NM_138426, intron 5 of 7) L1PA15|LINE|L1 94269 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 294.166-6 chr3 42148513 42148772 + 1.33333 NA promoter-TSS (NM_001265610) promoter-TSS (NM_001265610) -593 NM_001265610 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 387-16 chr4 156154721 156155149 + 1.33333 NA Intergenic L1M4b|LINE|L1 -201069 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 243.333-33 chr4 91156263 91156526 + 1.33333 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 921363 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 301.334-3 chr19 46753834 46754225 + 1.33333 NA intron (NM_001039885, intron 3 of 3) intron (NM_001039885, intron 3 of 3) -7579 NM_013403 29888 Hs.631590 NM_013403 ENSG00000090372 STRN4 PPP2R6C|ZIN|zinedin striatin 4 protein-coding 197.333-42 chrX 54578065 54578457 + 1.33333 NA Intergenic L1ME1|LINE|L1 48042 NM_001184819 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 288.333-19 chr8 69272934 69273377 + 1.33333 NA Intergenic Intergenic -168965 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 163.666-3 chr15 70890010 70890243 + 1.33333 NA intron (NM_020147, intron 1 of 2) intron (NM_020147, intron 1 of 2) 2307 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 246.333-4 chr1 95230924 95231167 + 1.33333 NA intron (NM_001199691, intron 7 of 7) intron (NM_001199691, intron 7 of 7) 2937 NR_125948 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 239.334-15 chr9 104387846 104388067 + 1.33333 NA Intergenic Charlie7|DNA|hAT-Charlie -116307 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 167.833-33 chr3 143037488 143037730 + 1.33333 NA intron (NM_001080415, intron 21 of 27) intron (NM_001080415, intron 21 of 27) 36039 NM_001320219 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP associated SURP domain containing protein-coding 300.666-2 chr2 16143306 16143652 + 1.33333 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat 93052 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 196.667-43 chr7 25428087 25428320 + 1.33333 NA Intergenic Intergenic -199717 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 268.833-10 chr2 69734813 69735183 + 1.33333 NA intron (NM_001320698, intron 3 of 14) intron (NM_001320698, intron 3 of 14) -7136 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 225.333-19 chr17 69327094 69327354 + 1.33333 NA promoter-TSS (NM_172232) promoter-TSS (NM_172232) -91 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 276.333-18 chr9 102209426 102209844 + 1.33333 NA Intergenic Intergenic -310002 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 219.666 chr11 36636646 36636865 + 1.33333 NA intron (NM_001276722, intron 4 of 5) intron (NM_001276722, intron 4 of 5) -38476 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 329.166-2 chr11 99730049 99730392 + 1.33333 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 174075 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 360.166-3 chr17 17922720 17923134 + 1.33333 NA intron (NM_001288787, intron 1 of 13) intron (NM_001288787, intron 1 of 13) 49473 NM_001350333 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 191.666-9 chr3 22039286 22039553 + 1.33333 NA Intergenic L2|LINE|L2 82280 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 268.5-5 chr10 91083152 91083394 + 1.33333 NA Intergenic L1MEc|LINE|L1 37465 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 183.333-20 chr12 123089653 123089844 + 1.33333 NA intron (NM_020845, intron 1 of 24) intron (NM_020845, intron 1 of 24) 8364 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 PITPNM2-AS1 - PITPNM2 antisense RNA 1 ncRNA 180.333-42 chr4 76581078 76581265 + 1.33333 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 5620 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 303.333-24 chr9 33290544 33290955 + 1.33333 NA intron (NM_002504, intron 1 of 23) CpG 233 NM_002504 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 331.833-8 chr5 147597455 147597756 + 1.33333 NA intron (NR_038902, intron 3 of 3) intron (NR_038902, intron 3 of 3) 37611 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 390.5-7 chr4 15651338 15651984 + 1.33333 NA intron (NR_036464, intron 1 of 11) intron (NR_036464, intron 1 of 11) 3696 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 455.167-4 chr15 80659679 80660252 + 1.33333 NA Intergenic L1MC5|LINE|L1 -35345 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 211.333-43 chr6 66496914 66497079 + 1.33333 NA Intergenic Intergenic 709117 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 235.666-7 chrX 134390259 134390659 + 1.33333 NA intron (NM_032458, intron 3 of 9) intron (NM_032458, intron 3 of 9) 17147 NM_032458 84295 Hs.356501 NM_032335 ENSG00000156531 PHF6 BFLS|BORJ|CENP-31 PHD finger protein 6 protein-coding 192.667-2 chr1 83997241 83997479 + 1.33333 NA intron (NM_001350214, intron 1 of 21) intron (NM_001350214, intron 1 of 21) 1772 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 284.666-4 chr2 180989810 180990118 + 1.33333 NA intron (NM_001278555, intron 3 of 5) intron (NM_001278555, intron 3 of 5) 8840 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 220-32 chr7 106434211 106434454 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -149349 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 361.666-2 chr17 49166909 49167407 + 1.33333 NA intron (NM_153446, intron 9 of 10) intron (NM_153446, intron 9 of 10) 34389 NM_153446 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 248.333 chr1 36034658 36035138 + 1.33333 NA intron (NM_177422, intron 11 of 16) intron (NM_177422, intron 11 of 16) -49196 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 325.5-14 chr3 22342943 22343364 + 1.33333 NA Intergenic MER33|DNA|hAT-Charlie 386014 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 175-37 chr21 22531640 22531876 + 1.33333 NA Intergenic Intergenic 433141 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 275-32 chr9 102864001 102864439 + 1.33333 NA Intergenic Intergenic -131113 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 281.166-2 chr7 123070607 123070920 + 1.33333 NA Intergenic L2a|LINE|L2 -75063 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 287.167-7 chr17 52973937 52974360 + 1.33333 NA Intergenic L1MA8|LINE|L1 -11357 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 182.667-22 chr17 74501796 74502021 + 1.33333 NA Intergenic LTR18B|LTR|ERVL 29567 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 207-32 chr8 89063439 89063604 + 1.33333 NA Intergenic L1MA2|LINE|L1 694190 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 249-12 chr15 86318937 86319204 + 1.33333 NA intron (NM_152336, intron 17 of 24) L1ME3D|LINE|L1 -2102 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 251-12 chr19 28349292 28349622 + 1.33333 NA Intergenic L1MC4|LINE|L1 -257231 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 245.666-7 chr22 40034664 40035088 + 1.33333 NA 3' UTR (NM_138435, exon 5 of 5) 3' UTR (NM_138435, exon 5 of 5) 9654 NR_163486 114841040 Hs.474880 NR_163486 LOC114841040 - uncharacterized LOC114841040 ncRNA 288.5-6 chr11 102667323 102667686 + 1.33333 NA Intergenic Intergenic 38265 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 397.499-3 chr5 108708459 108708850 + 1.33333 NA Intergenic L1ME4b|LINE|L1 19607 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 170.666-4 chr18 25356384 25356518 + 1.33333 NA Intergenic Intergenic -4285 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 444.666-3 chr2 187982459 187982834 + 1.33333 NA Intergenic Intergenic 305045 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 315.499-2 chr4 92871022 92871465 + 1.33333 NA intron (NM_001286838, intron 2 of 14) (TTTTTAT)n|Simple_repeat|Simple_repeat 566844 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 440.833-2 chr12 28172578 28173094 + 1.33333 NA Intergenic Intergenic -17620 NM_001352086 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 307.333-4 chr12 56116302 56116552 + 1.33333 NA promoter-TSS (NM_021104) promoter-TSS (NM_021104) -206 NM_021104 6171 Hs.112553 NM_021104 ENSG00000229117 RPL41 L41 ribosomal protein L41 protein-coding 231.334 chr12 32297692 32297999 + 1.33333 NA intron (NR_148725, intron 3 of 9) L2b|LINE|L2 -101713 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 178.667-47 chrX 135052348 135052577 + 1.33333 NA promoter-TSS (NM_001078172) promoter-TSS (NM_001078172) -271 NM_001078172 26071 Hs.460924 NM_015582 ENSG00000203950 RTL8A CXX1b|FAM127B|MAR8A|SIRH6 retrotransposon Gag like 8A protein-coding 235-7 chr11 78563070 78563391 + 1.33333 NA intron (NM_024678, intron 4 of 13) AluSc|SINE|Alu 11634 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 180.333-56 chr8 141012797 141013000 + 1.33333 NA Intergenic L1MC3|LINE|L1 -10819 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 222.166-3 chr9 20941709 20941974 + 1.33333 NA intron (NM_017794, intron 30 of 45) intron (NM_017794, intron 30 of 45) 89799 NM_001321883 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 238.666-7 chr4 37966385 37966584 + 1.33333 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 6086 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 297.334-7 chr7 50037039 50037450 + 1.33333 NA intron (NM_001159878, intron 4 of 7) L1PA10|LINE|L1 56002 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 292.333-21 chr6 57013273 57013673 + 1.33333 NA intron (NM_152731, intron 3 of 6) MER77B|LTR|ERVL -33059 NM_001286274 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 455.166 chr19 48190598 48191007 + 1.33333 NA intron (NM_199341, intron 3 of 3) intron (NM_199341, intron 3 of 3) 20122 NM_199341 374920 Hs.664054 NM_199341 ENSG00000185453 ZSWIM9 C19orf68 zinc finger SWIM-type containing 9 protein-coding 172.666-3 chr20 44515483 44515646 + 1.33333 NA intron (NM_006811, intron 1 of 9) L1MB5|LINE|L1 6506 NM_006811 10955 Hs.272168 NM_006811 ENSG00000132824 SERINC3 AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1 serine incorporator 3 protein-coding 169-22 chr17 69392150 69392295 + 1.33333 NA Intergenic Intergenic -22475 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 252-9 chr10 57336585 57336831 + 1.33333 NA Intergenic LTR12D|LTR|ERV1 -32149 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 171-50 chr6 3410895 3411121 + 1.33333 NA intron (NM_021945, intron 3 of 10) intron (NM_021945, intron 3 of 10) 34005 NR_104448 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 200.333-22 chr2 71521136 71521364 + 1.33333 NA intron (NM_001130985, intron 12 of 54) L1ME4a|LINE|L1 54551 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 230.166 chr1 236132011 236132266 + 1.33333 NA Intergenic Intergenic -10401 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 359.166-6 chr6 141677071 141677408 + 1.33333 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 411560 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 306.333-3 chr17 9768617 9769030 + 1.33333 NA Intergenic Intergenic 22769 NM_001220493 201140 Hs.61684 NM_001105571 ENSG00000184544 DHRS7C SDR32C2 dehydrogenase/reductase 7C protein-coding 296.667-3 chr10 19162078 19162463 + 1.33333 NA intron (NM_001142308, intron 12 of 39) intron (NM_001142308, intron 12 of 39) 113469 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 239-34 chr7 24441946 24442171 + 1.33333 NA Intergenic Intergenic -131394 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 346.166-2 chr14 53998846 53999249 + 1.33333 NA Intergenic Intergenic -42156 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 218.666 chr11 31247726 31248124 + 1.33333 NA intron (NM_001367979, intron 8 of 38) intron (NM_001367979, intron 8 of 38) 121814 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 212.5-30 chr5 128284355 128284907 + 1.33333 NA intron (NM_001999, intron 55 of 64) intron (NM_001999, intron 55 of 64) 200865 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 394.666-6 chr8 89745974 89746523 + 1.33333 NA intron (NR_125822, intron 1 of 4) L1M2|LINE|L1 11463 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 257.833-7 chr3 191388970 191389253 + 1.33333 NA intron (NM_178335, intron 10 of 11) (TTCC)n|Simple_repeat|Simple_repeat -36413 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 324.999-3 chr5 132422638 132422992 + 1.33333 NA intron (NR_161242, intron 2 of 3) intron (NR_161242, intron 2 of 3) 11886 NR_161242 441108 Hs.658288 NM_001013717 C5orf56 - chromosome 5 open reading frame 56 ncRNA 275.666-2 chr16 49702997 49703219 + 1.33333 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) -38784 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 252-17 chr12 65496197 65496500 + 1.33333 NA intron (NR_120431, intron 3 of 3) MLT1H2|LTR|ERVL-MaLR 60963 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 175.333-33 chr20 12477242 12477443 + 1.33333 NA Intergenic L1MC3|LINE|L1 459621 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 257.166 chr1 15110087 15110340 + 1.33333 NA intron (NM_201628, intron 13 of 14) (TG)n|Simple_repeat|Simple_repeat 42251 NR_027136 200197 Hs.531424 NM_182534 ENSG00000175147 TMEM51-AS1 C1orf126 TMEM51 antisense RNA 1 ncRNA 181.666-6 chr7 26199306 26199463 + 1.33333 NA intron (NM_031243, intron 1 of 11) intron (NM_031243, intron 1 of 11) 1362 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 185-12 chr11 78569769 78569971 + 1.33333 NA intron (NM_024678, intron 2 of 13) intron (NM_024678, intron 2 of 13) 4994 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 230.333-28 chr6 25898875 25899172 + 1.33333 NA Intergenic L2a|LINE|L2 -24780 NM_006632 10786 Hs.327179 NM_006632 ENSG00000124564 SLC17A3 GOUT4|NPT4|UAQTL4 solute carrier family 17 member 3 protein-coding 331-15 chr3 113696750 113697328 + 1.33333 NA promoter-TSS (NR_111981) promoter-TSS (NR_111981) -393 NR_111981 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 186-36 chr6 49538191 49538433 + 1.33333 NA Intergenic L1MC4|LINE|L1 -12356 NM_001145652 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 297.333-20 chr7 95993494 95993877 + 1.33333 NA intron (NM_004411, intron 9 of 16) intron (NM_004411, intron 9 of 16) 221179 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 374.333-2 chr18 38633736 38634259 + 1.33333 NA Intergenic Intergenic 976862 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 268.833-15 chr3 97348228 97348637 + 1.33333 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -91175 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 229.333-8 chr12 27022029 27022551 + 1.33333 NA promoter-TSS (NM_001271811) promoter-TSS (NM_001271811) -232 NR_073463 9412 Hs.286145 NM_004264 ENSG00000152944 MED21 SRB7|SURB7|hSrb7 mediator complex subunit 21 protein-coding 236.999 chr10 47164046 47164251 + 1.33333 NA Intergenic Intergenic -136049 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 537.666 chr21 25789835 25790421 + 1.33333 NA Intergenic Intergenic -54474 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 333.166-11 chr8 25195596 25196021 + 1.33333 NA intron (NM_024940, intron 1 of 51) L2b|LINE|L2 11119 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 283.333-9 chr17 15238832 15239056 + 1.33333 NA intron (NM_001330143, intron 4 of 4) intron (NM_001330143, intron 4 of 4) 12752 NR_039884 100616125 NR_039884 ENSG00000265110 MIR4731 - microRNA 4731 ncRNA 224.666-7 chr21 26945007 26945240 + 1.33333 NA intron (NM_007038, intron 2 of 7) intron (NM_007038, intron 2 of 7) -8838 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 196.333-31 chr3 151474322 151474639 + 1.33333 NA Intergenic Intergenic -15771 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 259-27 chr3 83531327 83531675 + 1.33333 NA Intergenic Intergenic 1338074 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 504.166 chr19 42529470 42530048 + 1.33333 NA intron (NR_073180, intron 2 of 2) A-rich|Low_complexity|Low_complexity -1278 NM_001184813 634 Hs.512682 NM_001712 ENSG00000079385 CEACAM1 BGP|BGP1|BGPI carcinoembryonic antigen related cell adhesion molecule 1 protein-coding 353.166-3 chr17 39310422 39310863 + 1.33333 NA intron (NM_001370209, intron 2 of 13) AluJo|SINE|Alu 13242 NR_162098 113839521 NR_162098 MIR548BC - microRNA 548BC ncRNA 265.333-24 chr8 138264508 138264761 + 1.33333 NA intron (NM_015912, intron 4 of 19) L2b|LINE|L2 -181089 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 319-10 chr4 64825720 64826297 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 178492 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 291.833 chr10 54759189 54759411 + 1.33333 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 41931 NM_033056 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 284.667-7 chr12 9726026 9726410 + 1.33333 NA intron (NM_001253750, intron 1 of 3) L1MEd|LINE|L1 7081 NM_001267701 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 163.333-55 chr7 33767166 33767448 + 1.33333 NA Intergenic Intergenic -137608 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 277.667-4 chr11 107017437 107017911 + 1.33333 NA intron (NM_001256424, intron 1 of 8) CpG 802 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 258.333-23 chr8 118685293 118685674 + 1.33333 NA intron (NR_038210, intron 3 of 4) LTR73|LTR|ERV1 -63520 NR_109794 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 208.667-4 chr1 222565537 222565848 + 1.33333 NA intron (NM_001201536, intron 7 of 11) AluJb|SINE|Alu -17588 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 316-8 chr20 5911421 5911887 + 1.33333 NA exon (NM_001819, exon 1 of 5) exon (NM_001819, exon 1 of 5) 144 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 266.833-12 chr20 33501978 33502210 + 1.33333 NA intron (NM_001032999, intron 1 of 10) intron (NM_001032999, intron 1 of 10) 11998 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 483.333-3 chr3 96484031 96484822 + 1.33333 NA Intergenic Intergenic 124462 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 266.999-4 chr16 3529711 3529956 + 1.33333 NA intron (NM_024793, intron 5 of 7) L1ME3F|LINE|L1 19939 NM_024793 23059 Hs.155995 NM_015041 ENSG00000103351 CLUAP1 CFAP22|FAP22|IFT38 clusterin associated protein 1 protein-coding 236.833-11 chr17 54791681 54791906 + 1.33333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -108898 NM_001321175 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 284-9 chr16 30032155 30032473 + 1.33333 NA intron (NM_001352173, intron 2 of 5) intron (NM_001352173, intron 2 of 5) -1043 NM_031478 83723 Hs.558560 NM_031478 ENSG00000149926 TLCD3B FAM57B|FP1188 TLC domain containing 3B protein-coding 246.167-25 chr22 31947511 31947862 + 1.33333 NA intron (NM_003405, intron 1 of 1) intron (NM_003405, intron 1 of 1) -2324 NR_126507 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 262.166-4 chr12 76351613 76351948 + 1.33333 NA TTS (NM_001319652) TTS (NM_001319652) -3365 NM_024685 79738 Hs.96322 NM_024685 ENSG00000179941 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 164-41 chr20 59400994 59401192 + 1.33333 NA Intergenic Intergenic 100482 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 220.667-11 chr11 110408092 110408396 + 1.33333 NA Intergenic AluJo|SINE|Alu -21704 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 631.166-2 chr22 32803742 32804473 + 1.33333 NA intron (NM_000362, intron 1 of 4) intron (NM_000362, intron 1 of 4) 3291 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 199.666-6 chr16 13094523 13094769 + 1.33333 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 193048 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 213.333-22 chr3 96168191 96168360 + 1.33333 NA Intergenic Intergenic -191689 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 294.166-3 chr14 63910104 63910414 + 1.33333 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 57255 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 296-13 chr6 56710100 56710469 + 1.33333 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -67395 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 184.667-46 chr7 27779080 27779341 + 1.33333 NA intron (NM_001362794, intron 5 of 16) FLAM_C|SINE|Alu 39115 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 180-51 chr5 90635997 90636196 + 1.33333 NA intron (NR_003149, intron 10 of 89) intron (NR_003149, intron 10 of 89) 77299 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 233.333-35 chr8 136491839 136492127 + 1.33333 NA Intergenic Intergenic -38815 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 192-20 chr2 42118413 42118640 + 1.33333 NA Intergenic Intergenic -50827 NM_019063 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 302.666-8 chr4 189090186 189090473 + 1.33333 NA Intergenic Intergenic 313672 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 311.666-5 chr14 46611082 46611568 + 1.33333 NA Intergenic L1ME5|LINE|L1 40456 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 453.667 chr1 248730679 248731272 + 1.33333 NA Intergenic MER50B|LTR|ERV1 24784 NM_001085474 646627 Hs.146268 NM_001085474 ENSG00000259823 LYPD8 - LY6/PLAUR domain containing 8 protein-coding 273.667-11 chr2 138553075 138553662 + 1.33333 NA intron (NM_001001664, intron 5 of 10) intron (NM_001001664, intron 5 of 10) 51598 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 229.334-6 chr3 56303544 56303787 + 1.33333 NA intron (NR_132749, intron 2 of 17) intron (NR_132749, intron 2 of 17) 164802 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 298-9 chr2 67215401 67215819 + 1.33333 NA promoter-TSS (NR_038844) promoter-TSS (NR_038844) -291 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 406.167-7 chr17 60035930 60036525 + 1.33333 NA Intergenic L1MD2|LINE|L1 6878 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 319.499-2 chr8 106263301 106263582 + 1.33333 NA Intergenic L2c|LINE|L2 -6737 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 510.333-2 chr19 30682853 30683531 + 1.33333 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 310808 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 239.834-11 chr9 20882072 20882500 + 1.33333 NA intron (NM_017794, intron 22 of 45) L1MEg1|LINE|L1 95359 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 196-15 chr17 77345331 77345855 + 1.33333 NA intron (NM_006640, intron 1 of 10) LTR41C|LTR|ERVL 26078 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 245-34 chr7 54817157 54817428 + 1.33333 NA Intergenic MER4A1|LTR|ERV1 57979 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 218-7 chr10 127679608 127679866 + 1.33333 NA Intergenic AluJo|SINE|Alu -57448 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 165-9 chr11 16597260 16597683 + 1.33333 NA intron (NM_001367872, intron 3 of 16) MIR|SINE|MIR -121083 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 174.666-7 chr9 36100702 36100947 + 1.33333 NA intron (NM_021111, intron 11 of 20) intron (NM_021111, intron 11 of 20) -35712 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 268.333-11 chr17 75359556 75360124 + 1.33333 NA intron (NM_002086, intron 2 of 5) intron (NM_002086, intron 2 of 5) 45838 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 218.833-22 chr6 169297022 169297291 + 1.33333 NA Intergenic AluY|SINE|Alu -43042 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 278.666-6 chr17 67913333 67913644 + 1.33333 NA intron (NM_182641, intron 11 of 27) intron (NM_182641, intron 11 of 27) 80118 NM_181655 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 244.667-14 chr17 59658943 59659136 + 1.33333 NA intron (NM_001288653, intron 6 of 31) intron (NM_001288653, intron 6 of 31) 39144 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 279-32 chr8 90126509 90126829 + 1.33333 NA Intergenic Intergenic -43790 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 208.167-5 chr10 33136978 33137289 + 1.33333 NA Intergenic MIRb|SINE|MIR -20326 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 199.833-13 chr15 57689771 57689986 + 1.33333 NA intron (NR_104371, intron 12 of 16) (TA)n|Simple_repeat|Simple_repeat -16643 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 291.999-2 chr14 75897143 75897414 + 1.33333 NA intron (NM_015072, intron 30 of 31) intron (NM_015072, intron 30 of 31) 84717 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 178-42 chr8 64039394 64039625 + 1.33333 NA intron (NR_125826, intron 4 of 4) L2|LINE|L2 270079 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 242.166-7 chr7 43564776 43564982 + 1.33333 NA 3' UTR (NM_015052, exon 30 of 30) 3' UTR (NM_015052, exon 30 of 30) -18229 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 281.999-2 chr3 8608082 8608401 + 1.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR 36459 NR_024065 29931 Hs.433151 NM_013343 LINC00312 ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312 long intergenic non-protein coding RNA 312 ncRNA 198.666-4 chr3 197993503 197993872 + 1.33333 NA intron (NR_026786, intron 9 of 16) L1MA7|LINE|L1 33470 NR_026786 89782 Hs.518540 NM_033029 ENSG00000185621 LMLN GP63|INV|IX14|LMNL1|MSP leishmanolysin like peptidase protein-coding 176.666-10 chr8 105382176 105382480 + 1.33333 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 62785 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 241.334-6 chr22 40325093 40325485 + 1.33333 NA 3' UTR (NM_001024843, exon 24 of 24) 3' UTR (NM_001024843, exon 24 of 24) -21211 NM_000026 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 260.334-6 chr16 11705301 11705678 + 1.33333 NA intron (NM_001303447, intron 5 of 12) intron (NM_001303447, intron 5 of 12) 37034 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 220.666-3 chr11 14882217 14882405 + 1.33333 NA intron (NM_024514, intron 2 of 4) L2a|LINE|L2 9894 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 243.333-4 chr10 59221574 59221793 + 1.33333 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 44216 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 226.166-4 chr20 16232422 16232624 + 1.33333 NA Intergenic Intergenic -246641 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 484.166-5 chr4 183262051 183262647 + 1.33333 NA intron (NM_024949, intron 11 of 22) intron (NM_024949, intron 11 of 22) -21715 NR_126473 101928734 Hs.570713 NR_126473 ENSG00000251128 WWC2-AS1 - WWC2 antisense RNA 1 ncRNA 272.999 chr2 79181386 79181606 + 1.33333 NA Intergenic Intergenic -21743 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 431.666-2 chr18 8533266 8533728 + 1.33333 NA Intergenic L1PA14|LINE|L1 -75948 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 190-54 chr8 123015728 123015887 + 1.33333 NA intron (NM_024295, intron 7 of 7) intron (NM_024295, intron 7 of 7) 9965 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 231.833-9 chr2 54205713 54205940 + 1.33333 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 50403 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 351.333-6 chr2 19491043 19491378 + 1.33333 NA Intergenic Intergenic -132587 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 203.5-4 chr1 83072514 83072764 + 1.33333 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -86431 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 268-9 chr10 93458744 93459255 + 1.33333 NA intron (NM_013451, intron 1 of 53) intron (NM_013451, intron 1 of 53) 23335 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 174.166-4 chr8 79007086 79007250 + 1.33333 NA Intergenic Intergenic 169639 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 227.666-9 chr7 25758012 25758311 + 1.33333 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) -7129 NR_157815 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 364-9 chr2 113889490 113889881 + 1.33333 NA promoter-TSS (NM_001277140) promoter-TSS (NM_001277140) -249 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 277.333-9 chr12 1517299 1517528 + 1.33333 NA Intergenic Intergenic 14779 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 272.166-3 chr14 35834606 35834986 + 1.33333 NA intron (NM_032352, intron 3 of 9) intron (NM_032352, intron 3 of 9) 8458 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 206.666-2 chr13 99501262 99501471 + 1.33333 NA promoter-TSS (NM_004800) promoter-TSS (NM_004800) -106 NM_004800 9375 Hs.607896 NM_004800 ENSG00000125304 TM9SF2 P76 transmembrane 9 superfamily member 2 protein-coding 205.5-30 chr5 139576110 139576573 + 1.33333 NA intron (NM_181838, intron 2 of 7) MLT1C|LTR|ERVL-MaLR 15002 NM_003339 7322 Hs.108332 NM_003339 ENSG00000131508 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin conjugating enzyme E2 D2 protein-coding 370.499 chr8 144976439 144976780 + 1.33333 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -18256 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 233.5 chr1 25204823 25205083 + 1.33333 NA Intergenic MER5A|DNA|hAT-Charlie 27549 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 188.333-34 chr6 70707175 70707444 + 1.33333 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 38779 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 195.667-33 chr4 182805188 182805607 + 1.33333 NA Intergenic Intergenic 111856 NM_001351747 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 339.334-9 chr8 129533582 129533960 + 1.33333 NA intron (NR_130917, intron 1 of 3) L1MEg|LINE|L1 41247 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 257.666-7 chrX 50546548 50546868 + 1.33333 NA Intergenic L1MDa|LINE|L1 -75883 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 172-7 chr11 33193244 33193387 + 1.33333 NA Intergenic Intergenic 31658 NR_034027 338739 Hs.423476 NR_034027 ENSG00000247151 CSTF3-DT CSTF3-AS1 CSTF3 divergent transcript ncRNA 199-60 chr9 127994817 127995074 + 1.33333 NA Intergenic AluSx1|SINE|Alu -13956 NM_001035254 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 303.333-19 chr7 117398525 117398784 + 1.33333 NA intron (NM_001301821, intron 4 of 12) intron (NM_001301821, intron 4 of 12) 28839 NM_130768 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 272.666-3 chr11 29025146 29025442 + 1.33333 NA Intergenic MER21A|LTR|ERVL -547746 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 266.833-13 chr20 48882430 48882747 + 1.33333 NA Intergenic L1MB8|LINE|L1 -39123 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 340.333-17 chr9 9373495 9374041 + 1.33333 NA intron (NM_002839, intron 9 of 45) MLT1D|LTR|ERVL-MaLR -425624 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 438-6 chr4 95697948 95698632 + 1.33333 NA Intergenic L1MC4|LINE|L1 -141803 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 193-34 chr7 49368726 49368953 + 1.33333 NA Intergenic Intergenic -404799 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 169.167-29 chr6 95088590 95088879 + 1.33333 NA Intergenic Intergenic 488717 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 313.333-13 chr4 53445531 53445900 + 1.33333 NA intron (NM_001134938, intron 12 of 14) MER34B|LTR|ERV1 -54362 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 234.333-11 chr14 56578780 56579146 + 1.33333 NA promoter-TSS (NM_017799) promoter-TSS (NM_017799) -835 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 183.5-19 chr2 14397603 14397947 + 1.33333 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 3183 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 185.666-4 chr19 49931479 49931641 + 1.33333 NA intron (NM_001290746, intron 2 of 2) AluJr|SINE|Alu 1356 NM_001290746 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 292-26 chr8 128514765 128515175 + 1.33333 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 49709 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 194.333-32 chr7 26668817 26669023 + 1.33333 NA 3' UTR (NM_001303468, exon 13 of 13) 3' UTR (NM_001303468, exon 13 of 13) 31049 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 238.833-9 chr17 53462457 53462878 + 1.33333 NA Intergenic Intergenic -360260 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 420.999 chr7 19769335 19769831 + 1.33333 NA intron (NM_001366627, intron 1 of 4) intron (NM_001366627, intron 1 of 4) 3198 NM_152774 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 234.333-23 chr22 42615047 42615306 + 1.33333 NA promoter-TSS (NM_032311) promoter-TSS (NM_032311) -69 NR_029422 267010 Hs.574857 NR_029422 ENSG00000276027 RNU12 RNU12-1|RNU12L|RNU12P|dJ222E13.7 RNA, U12 small nuclear snRNA 219.333 chr1 17233533 17233982 + 1.33333 NA intron (NM_013358, intron 11 of 15).2 intron (NM_013358, intron 11 of 15).2 -15341 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3|UHS1 peptidyl arginine deiminase 3 protein-coding 352.666-9 chr5 42423480 42423809 + 1.33333 NA promoter-TSS (NM_001242399) promoter-TSS (NM_001242399) 205 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 296.333-23 chr9 1814440 1814725 + 1.33333 NA Intergenic Intergenic -200765 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 293.333-13 chr20 9345311 9345816 + 1.33333 NA intron (NM_000933, intron 4 of 35) intron (NM_000933, intron 4 of 35) 37763 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 384.333-2 chr13 25248914 25249298 + 1.33333 NA 3' UTR (NM_004685, exon 14 of 14) 3' UTR (NM_004685, exon 14 of 14) 38382 NM_004685 9107 Hs.643702 NM_004685 ENSG00000139505 MTMR6 - myotubularin related protein 6 protein-coding 245.167-17 chr7 92646152 92646427 + 1.33333 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -55899 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 209.333-32 chr5 87401545 87401715 + 1.33333 NA intron (NR_157069, intron 5 of 8) intron (NR_157069, intron 5 of 8) 11274 NM_001199189 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 217.667-27 chr2 192052346 192052655 + 1.33333 NA intron (NM_001305134, intron 5 of 9) intron (NM_001305134, intron 5 of 9) 142433 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 195-21 chr17 73096941 73097219 + 1.33333 NA Intergenic Intergenic -4392 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 350.666 chr14 55200341 55200756 + 1.33333 NA Intergenic LTR65|LTR|ERV1 -8963 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 177.333-22 chr3 10631295 10631512 + 1.33333 NA Intergenic MIRb|SINE|MIR -4596 NR_046766 100874325 Hs.143004 NR_046766 ENSG00000224771 ATP2B2-IT2 - ATP2B2 intronic transcript 2 ncRNA 212.666-3 chr11 33161474 33161743 + 1.33333 NA promoter-TSS (NM_001033506) promoter-TSS (NM_001033506) -49 NR_034027 338739 Hs.423476 NR_034027 ENSG00000247151 CSTF3-DT CSTF3-AS1 CSTF3 divergent transcript ncRNA 234-39 chrX 82218589 82218970 + 1.33333 NA Intergenic L1PA13|LINE|L1 1016677 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 245.833-2 chr1 231509409 231509605 + 1.33333 NA Intergenic MIR|SINE|MIR -19146 NR_028394 100303453 Hs.13318 NR_028393 ENSG00000270106 TSNAX-DISC1 - TSNAX-DISC1 readthrough (NMD candidate) ncRNA 411.499 chr14 69046551 69047138 + 1.33333 NA Intergenic Intergenic 67162 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 293.667-8 chr17 56251473 56251809 + 1.33333 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 98166 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 304-23 chr4 44929555 44930073 + 1.33333 NA Intergenic Intergenic -203180 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 389.333 chr11 66868445 66868846 + 1.33333 NA intron (NM_022172, intron 8 of 20) intron (NM_022172, intron 8 of 20) 11581 NM_001363524 78999 Hs.209979 NM_024036 ENSG00000173621 LRFN4 FIGLER6|SALM3|SALM3. leucine rich repeat and fibronectin type III domain containing 4 protein-coding 444.666-2 chr14 56450292 56450700 + 1.33333 NA Intergenic MER4-int|LTR|ERV1 -63835 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 342.833 chr1 236604517 236605191 + 1.33333 NA promoter-TSS (NM_018072) promoter-TSS (NM_018072) -338 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 237.667-32 chr5 3908553 3908905 + 1.33333 NA Intergenic Intergenic 312897 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 196.666-4 chr8 3296843 3297018 + 1.33333 NA intron (NM_033225, intron 25 of 69) L2a|LINE|L2 -568479 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 168.5-49 chr8 83073614 83073931 + 1.33333 NA Intergenic MER51C|LTR|ERV1 161668 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 224-22 chr19 37357918 37358121 + 1.33333 NA non-coding (NR_138121, exon 5 of 6) non-coding (NR_138121, exon 5 of 6) -13080 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 309.5-15 chr4 88503043 88503414 + 1.33333 NA intron (NM_016323, intron 20 of 22) intron (NM_016323, intron 20 of 22) 20548 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 186-47 chr9 82073403 82073611 + 1.33333 NA Intergenic Intergenic 84735 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 242.666-3 chr1 229803570 229803944 + 1.33333 NA Intergenic Intergenic 82061 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 241.333-16 chr2 40698020 40698241 + 1.33333 NA Intergenic Intergenic -185695 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 308.5-23 chr7 31372306 31372696 + 1.33333 NA Intergenic Intergenic -31775 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 215.167-20 chr3 51973868 51974323 + 1.33333 NA promoter-TSS (NM_015407) promoter-TSS (NM_015407) 535 NM_032750 84836 Hs.420796 NM_032750 ENSG00000114779 ABHD14B CIB|HEL-S-299 abhydrolase domain containing 14B protein-coding 440.332 chr5 137629455 137629958 + 1.33333 NA intron (NM_017415, intron 12 of 14) intron (NM_017415, intron 12 of 14) 17943 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 279.666 chr1 216521256 216521465 + 1.33333 NA intron (NM_001243518, intron 6 of 7) intron (NM_001243518, intron 6 of 7) -97912 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 279.5-13 chr21 28415832 28416058 + 1.33333 NA Intergenic Intergenic -123373 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 167-32 chr5 9434735 9435023 + 1.33333 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -76454 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 287.833-6 chr15 87611683 87611906 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR 34865 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 295.333-21 chr6 108395291 108395658 + 1.33333 NA intron (NR_136553, intron 3 of 8) AluJb|SINE|Alu 100420 NM_001323005 246269 Hs.259666 NM_145315 ENSG00000135537 AFG1L AFG1|LACE1|c222389 AFG1 like ATPase protein-coding 278.499 chr1 77738161 77738406 + 1.33333 NA intron (NM_015017, intron 6 of 24) intron (NM_015017, intron 6 of 24) 21569 NM_201626 23032 Hs.480597 NM_015017 ENSG00000077254 USP33 VDU1 ubiquitin specific peptidase 33 protein-coding 322.167-5 chr2 218298009 218298483 + 1.33333 NA intron (NM_015488, intron 2 of 9) MER5B|DNA|hAT-Charlie -5669 NM_001321436 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 317.333 chr10 21195157 21195504 + 1.33333 NA Intergenic Intergenic 21028 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 265-7 chr18 3144108 3144449 + 1.33333 NA intron (NM_019856, intron 13 of 36) L1ME1|LINE|L1 75690 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 170-50 chr7 35638740 35638982 + 1.33333 NA intron (NM_022373, intron 5 of 8) intron (NM_022373, intron 5 of 8) 56274 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 225.833-10 chr17 9905874 9906081 + 1.33333 NA promoter-TSS (NM_002903) promoter-TSS (NM_002903) -706 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 483.833 chr17 50198222 50198738 + 1.33333 NA exon (NM_000088, exon 6 of 51) exon (NM_000088, exon 6 of 51) 3159 NM_000088 1277 Hs.172928 NM_000088 ENSG00000108821 COL1A1 EDSARTH1|EDSC|OI1|OI2|OI3|OI4 collagen type I alpha 1 chain protein-coding 237.333-14 chr14 40251522 40251812 + 1.33333 NA Intergenic L1M1|LINE|L1 -703044 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 289.166-3 chr19 27715904 27716294 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr -77332 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 314.5-4 chr10 99278222 99278650 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR -42561 NM_001166245 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 247.667-34 chr7 69061697 69061974 + 1.33333 NA Intergenic MLT2B4|LTR|ERVL 535789 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 254-26 chr8 41430227 41430485 + 1.33333 NA Intergenic MER106A|DNA|hAT-Charlie 3701 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 315-16 chr6 11496422 11496862 + 1.33333 NA Intergenic MLT1G1|LTR|ERVL-MaLR -41107 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 361.333 chr10 94723673 94724063 + 1.33333 NA intron (NM_000772, intron 6 of 8) HAL1|LINE|L1 -38813 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 239.333-21 chr3 110450225 110450589 + 1.33333 NA Intergenic L1MA1|LINE|L1 619552 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 189.5-17 chr17 74748099 74748550 + 1.33333 NA promoter-TSS (NR_037409) promoter-TSS (NR_037409) -289 NR_037409 100500847 NR_037409 ENSG00000284186 MIR3615 mir-3615 microRNA 3615 ncRNA 222.667-35 chr5 110580829 110581041 + 1.33333 NA intron (NM_001039763, intron 10 of 13) L1PA16|LINE|L1 -67020 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 308.833-7 chr15 59629610 59630168 + 1.33333 NA Intergenic AluSx|SINE|Alu 18106 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 409.499-2 chr2 37827284 37827651 + 1.33333 NA non-coding (NR_110011, exon 3 of 3) non-coding (NR_110011, exon 3 of 3) 2244 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 254.167-22 chr4 149441589 149441835 + 1.33333 NA intron (NM_001363507, intron 12 of 13) MLT1-int|LTR|ERVL-MaLR 287417 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 255-27 chr5 27397627 27397950 + 1.33333 NA Intergenic MIRc|SINE|MIR -74504 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 401.667-6 chr17 66900090 66900606 + 1.33333 NA Intergenic Intergenic -64359 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 212.333-26 chr5 115616556 115616868 + 1.33333 NA intron (NM_001164469, intron 2 of 3) intron (NM_001164469, intron 2 of 3) 9324 NM_001164468 100302736 NM_001164468 ENSG00000251201 TMED7-TICAM2 MyD88-4|TICAM-2|TICAM2|TIRAP3|TIRP|TRAM TMED7-TICAM2 readthrough protein-coding 318.666-4 chr2 85418403 85418727 + 1.33333 NA promoter-TSS (NM_201594) promoter-TSS (NM_201594) -366 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 330.001 chr8 61774496 61774861 + 1.33333 NA Intergenic Intergenic 59890 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 290.166-8 chr8 52537396 52537918 + 1.33333 NA intron (NM_207413, intron 4 of 4) L1MA5|LINE|L1 27773 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 408.833 chr1 101922494 101923060 + 1.33333 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 50765 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 356.666-3 chr12 127689280 127689632 + 1.33333 NA Intergenic Intergenic -33868 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 292.333-4 chr10 67668241 67668551 + 1.33333 NA intron (NM_013266, intron 1 of 17) MER44B|DNA|TcMar-Tigger -2711 NM_001127384 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 255.667-15 chr6 69335247 69336033 + 1.33333 NA intron (NM_001704, intron 24 of 31) intron (NM_001704, intron 24 of 31) 460826 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 182.666-10 chr8 18672422 18672595 + 1.33333 NA intron (NM_015310, intron 9 of 15) intron (NM_015310, intron 9 of 15) 136359 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 227.166-6 chr21 42108001 42108206 + 1.33333 NA intron (NM_001004416, intron 9 of 22) intron (NM_001004416, intron 9 of 22) 431 NR_027243 150147 Hs.558646 NM_152507 ENSG00000184385 UMODL1-AS1 C21orf128 UMODL1 antisense RNA 1 ncRNA 186.167-8 chr14 46798618 46798764 + 1.33333 NA Intergenic L1MEb|LINE|L1 -146910 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 420 chr1 11556837 11557239 + 1.33333 NA Intergenic Intergenic -52493 NR_104624 101929181 Hs.568616 NR_104624 ENSG00000235643 LINC01647 - long intergenic non-protein coding RNA 1647 ncRNA 271.999 chr1 161428145 161428414 + 1.33333 NA Intergenic Intergenic -60396 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 278.833-3 chr10 95835618 95835934 + 1.33333 NA intron (NM_001164183, intron 2 of 7) L1PA17|LINE|L1 -72189 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 495-4 chr5 5025512 5026019 + 1.33333 NA Intergenic LTR12F|LTR|ERV1 -8594 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 574.833-3 chr18 46173304 46173998 + 1.33333 NA promoter-TSS (NM_145055) promoter-TSS (NM_145055) -371 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 167.167-21 chr20 62747742 62748013 + 1.33333 NA intron (NM_002531, intron 1 of 3) L1MA9|LINE|L1 28979 NR_046224 100652730 Hs.254951 NR_046224 LINC00659 - long intergenic non-protein coding RNA 659 ncRNA 242.5-33 chr3 148077290 148077555 + 1.33333 NA promoter-TSS (NR_134937) promoter-TSS (NR_134937) -737 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 196-25 chr2 190962521 190963105 + 1.33333 NA intron (NM_014905, intron 17 of 17) intron (NM_014905, intron 17 of 17) 51437 NM_139266 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 176.5-35 chr6 38604629 38604900 + 1.33333 NA intron (NM_001099272, intron 1 of 10) Charlie7|DNA|hAT-Charlie -8697 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 257.999 chr1 178431327 178431620 + 1.33333 NA intron (NM_004841, intron 3 of 15) L1ME4b|LINE|L1 -81636 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 201-35 chr4 176538453 176538633 + 1.33333 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 218577 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 178.166 chr17 48629832 48630057 + 1.33333 NA Intergenic Intergenic 2615 NR_029582 406972 NR_029582 ENSG00000210741 MIR196A1 MIRN196-1|MIRN196A1|mir-196a-1 microRNA 196a-1 ncRNA 387.167-2 chr1 199683356 199684052 + 1.33333 NA Intergenic Intergenic -344006 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 547.667-2 chr10 119750195 119750922 + 1.33333 NA intron (NM_014937, intron 1 of 19) intron (NM_014937, intron 1 of 19) 24508 NM_014937 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 309-11 chr15 91456043 91456453 + 1.33333 NA Intergenic L1PB1|LINE|L1 -7091 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 232-39 chr7 79515055 79515240 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 61187 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 236.333-35 chrX 74539093 74539348 + 1.33333 NA Intergenic Intergenic 75404 NM_183353 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 245.666-2 chr12 14373481 14373745 + 1.33333 NA intron (NM_001286515, intron 1 of 12) MLT1J|LTR|ERVL-MaLR 7931 NM_001286514 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 207.333-27 chr22 28601526 28601742 + 1.33333 NA intron (NM_001145418, intron 2 of 22) MER2|DNA|TcMar-Tigger 78231 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 261.499 chr6 106909882 106910232 + 1.33333 NA Intergenic L1ME4b|LINE|L1 63982 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 305.999-3 chr17 65162881 65163223 + 1.33333 NA exon (NM_001081955, exon 7 of 19) exon (NM_001081955, exon 7 of 19) 25682 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 308.333-14 chr3 51824463 51824955 + 1.33333 NA Intergenic Intergenic -2174 NM_001085479 401067 Hs.729443 NM_001085479 ENSG00000229972 IQCF3 - IQ motif containing F3 protein-coding 291.999 chr10 122142934 122143193 + 1.33333 NA intron (NM_001291876, intron 6 of 19) intron (NM_001291876, intron 6 of 19) -20567 NM_006997 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 240.666-14 chr8 26444608 26444994 + 1.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR 54388 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 262.999-2 chr20 9962027 9962404 + 1.33333 NA Intergenic Intergenic -24118 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 200.666 chr10 6069371 6069598 + 1.33333 NA Intergenic Intergenic -7114 NM_000417 3559 Hs.231367 NM_000417 ENSG00000134460 IL2RA CD25|IDDM10|IL2R|IMD41|TCGFR|p55 interleukin 2 receptor subunit alpha protein-coding 267.833-9 chr5 160390203 160390414 + 1.33333 NA Intergenic AluSx1|SINE|Alu 9746 NM_022090 63920 Hs.529464 NM_022090 ENSG00000221886 ZBED8 Buster3|C5orf54 zinc finger BED-type containing 8 protein-coding 251.333-16 chr2 143742080 143742401 + 1.33333 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -194827 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 323.666-5 chr18 6690511 6690800 + 1.33333 NA Intergenic Intergenic -39061 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 291.333-5 chr14 41581045 41581441 + 1.33333 NA Intergenic Intergenic -25613 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 225.5 chr1 70441512 70441856 + 1.33333 NA Intergenic MER89|LTR|ERV1 30416 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 283-21 chr7 44082161 44082493 + 1.33333 NA non-coding (NR_156113, exon 1 of 10) non-coding (NR_156113, exon 1 of 10) 203 NM_001284330 27434 Hs.596982 NM_013284 ENSG00000122678 POLM Pol Mu|Tdt-N DNA polymerase mu protein-coding 183.333-63 chr8 71081802 71082138 + 1.33333 NA Intergenic MamGypsy2-I|LTR|Gypsy 274736 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 438.333-6 chr5 141084516 141085081 + 1.33333 NA Intergenic Intergenic -6767 NR_105056 101926905 Hs.570900 NR_105056 LOC101926905 - uncharacterized LOC101926905 ncRNA 212-23 chr18 74343027 74343224 + 1.33333 NA intron (NM_001174123, intron 10 of 13) intron (NM_001174123, intron 10 of 13) 27286 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 221.333-27 chr6 76093084 76093498 + 1.33333 NA Intergenic L1PA14|LINE|L1 -20613 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 248.667-28 chr4 173257904 173258369 + 1.33333 NA intron (NM_017423, intron 2 of 11) intron (NM_017423, intron 2 of 11) -10024 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 185.666-6 chr5 149494071 149494251 + 1.33333 NA 3' UTR (NM_001892, exon 10 of 10) 3' UTR (NM_001892, exon 10 of 10) 56204 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 302-21 chr6 142202285 142202688 + 1.33333 NA intron (NM_001286371, intron 6 of 6) L1MC4a|LINE|L1 55223 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 293.5-11 chr17 40028382 40028775 + 1.33333 NA promoter-TSS (NR_102369) promoter-TSS (NR_102369) -933 NR_102369 101340251 NR_102369 ENSG00000238793 SNORD124 - small nucleolar RNA, C/D box 124 snoRNA 273.333-4 chr11 75654056 75654512 + 1.33333 NA intron (NM_207577, intron 1 of 2) intron (NM_207577, intron 1 of 2) 14150 NM_033063 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 244.5-12 chr17 74299219 74299663 + 1.33333 NA intron (NM_023036, intron 6 of 13) intron (NM_023036, intron 6 of 13) 25207 NM_023036 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 296.333-11 chr4 114774416 114774791 + 1.33333 NA Intergenic L1MA4|LINE|L1 117844 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 214-12 chr12 72901221 72901524 + 1.33333 NA Intergenic L2a|LINE|L2 -257818 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 175-36 chr20 57507608 57507927 + 1.33333 NA exon (NM_001269050, exon 9 of 9) exon (NM_001269050, exon 9 of 9) 17100 NM_001269044 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 264.499 chr1 46548157 46548438 + 1.33333 NA intron (NM_001322255, intron 3 of 3) intron (NM_001322255, intron 3 of 3) 2918 NM_001097611 148930 Hs.350764 NM_182516 ENSG00000162456 KNCN Kino|L5 kinocilin protein-coding 213.333-9 chr14 49298489 49298660 + 1.33333 NA Intergenic Intergenic 287806 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 188.167-5 chr1 74184464 74184772 + 1.33333 NA intron (NM_001105659, intron 1 of 7) intron (NM_001105659, intron 1 of 7) 13558 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 423.5-6 chr3 83775650 83776210 + 1.33333 NA Intergenic Intergenic 1093645 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 228.333-25 chr6 46690988 46691182 + 1.33333 NA exon (NM_001168359, exon 1 of 3) exon (NM_001168359, exon 1 of 3) -2920 NR_134643 101926934 Hs.664979 NR_134642 ENSG00000242973 LOC101926934 - uncharacterized LOC101926934 ncRNA 268.666-3 chr4 113285904 113286178 + 1.33333 NA intron (NM_001354275, intron 19 of 43) intron (NM_001354275, intron 19 of 43) -6798 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 226.666-8 chr5 71782281 71782547 + 1.33333 NA Intergenic Intergenic 63139 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 390 chr1 41516013 41516500 + 1.33333 NA intron (NM_024503, intron 7 of 8) CpG -31573 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 274.166-3 chr3 82912404 82912633 + 1.33333 NA Intergenic Intergenic 926376 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 260.667-36 chr3 157241169 157241709 + 1.33333 NA Intergenic L1ME2|LINE|L1 -80679 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 268.833-18 chr5 74780878 74781277 + 1.33333 NA TTS (NM_001271665) TTS (NM_001271665) -13706 NM_170681 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 287.667-3 chr10 24251623 24252154 + 1.33333 NA intron (NM_019590, intron 2 of 20) MIRb|SINE|MIR -23797 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 197.166 chr12 5987862 5988055 + 1.33333 NA intron (NM_000552, intron 38 of 51) L1ME1|LINE|L1 -41726 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 248.833-3 chr1 81581180 81581421 + 1.33333 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -23598 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 297.333-8 chr19 10950183 10950549 + 1.33333 NA Intergenic AluJb|SINE|Alu -10664 NM_001128849 6597 Hs.327527 NM_003072 ENSG00000127616 SMARCA4 BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 278.333-19 chr3 195259574 195259984 + 1.33333 NA intron (NM_152531, intron 1 of 3) CpG 11380 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 195.833-14 chr15 44350996 44351180 + 1.33333 NA intron (NR_157849, intron 7 of 9) L1MA3|LINE|L1 62369 NM_177974 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility 4 protein-coding 308.999 chr2 154376878 154377170 + 1.33333 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 80414 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 706.166-2 chr18 3454688 3455443 + 1.33333 NA intron (NM_173211, intron 1 of 2) intron (NM_173211, intron 1 of 2) 1291 NM_173211 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 280.833-18 chr8 129023897 129024251 + 1.33333 NA Intergenic THE1B-int|LTR|ERVL-MaLR -58073 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 274.833-3 chr11 12905353 12905592 + 1.33333 NA intron (NM_021961, intron 10 of 12) intron (NM_021961, intron 10 of 12) 84076 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 231.667-10 chr18 39946830 39947235 + 1.33333 NA Intergenic Intergenic 105323 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 302-24 chrX 129539942 129540480 + 1.33333 NA promoter-TSS (NM_001587) promoter-TSS (NM_001587) -48 NM_001318784 4952 Hs.126357 NM_000276 ENSG00000122126 OCRL INPP5F|LOCR|NPHL2|OCRL-1|OCRL1 OCRL inositol polyphosphate-5-phosphatase protein-coding 205.833-4 chr10 53108990 53109432 + 1.33333 NA Intergenic Intergenic -337511 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 375.333-11 chr7 34852238 34852625 + 1.33333 NA intron (NM_207173, intron 8 of 8) MIR3|SINE|MIR -18100 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 213.333-33 chr5 159126774 159126955 + 1.33333 NA Intergenic L1M4a1|LINE|L1 26381 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 271-14 chr2 103080258 103080574 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR -95987 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 334.666-4 chr11 32322340 32322719 + 1.33333 NA Intergenic L2c|LINE|L2 77871 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 288.5-24 chr5 60263469 60263867 + 1.33333 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 108995 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 235.666-6 chr8 130317226 130317622 + 1.33333 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -20891 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 288.666-8 chr22 40860442 40860810 + 1.33333 NA 3' UTR (NM_145174, exon 1 of 1) 3' UTR (NM_145174, exon 1 of 1) 1487 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 174.334-3 chr11 77878444 77878703 + 1.33333 NA TTS (NM_033547) TTS (NM_033547) 37435 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 287-15 chr2 11610047 11610356 + 1.33333 NA intron (NM_014668, intron 17 of 32) intron (NM_014668, intron 17 of 32) 59994 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 581.833 chr1 21334082 21335123 + 1.33333 NA intron (NM_001113348, intron 1 of 18) intron (NM_001113348, intron 1 of 18) 10902 NM_001113348 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 316.333-10 chr17 59505131 59505563 + 1.33333 NA intron (NR_110813, intron 1 of 2) ERV3-16A3_I-int|LTR|ERVL 21510 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 267.666-5 chr3 15781235 15781631 + 1.33333 NA TTS (NM_001349285) TTS (NM_001349285) 16546 NM_001349282 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 311.333-11 chr17 35244373 35244742 + 1.33333 NA intron (NM_144975, intron 1 of 4) intron (NM_144975, intron 1 of 4) 1485 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 279.166-4 chr5 91672887 91673329 + 1.33333 NA Intergenic Intergenic -289791 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 377.667-10 chr8 75407072 75407629 + 1.33333 NA promoter-TSS (NM_001330561) promoter-TSS (NM_001330561) -299 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 244-43 chr9 98255853 98256065 + 1.33333 NA promoter-TSS (NM_001267571) promoter-TSS (NM_001267571) -310 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 316.5-5 chr11 78139920 78140330 + 1.33333 NA promoter-TSS (NM_024079) promoter-TSS (NM_024079) 332 NR_102281 100289388 Hs.628183 NM_203432 ENSG00000246174 KCTD21-AS1 - KCTD21 antisense RNA 1 ncRNA 199.334-3 chr16 83069287 83069557 + 1.33333 NA intron (NM_001220489, intron 3 of 12) MIR|SINE|MIR -79124 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 282.667-24 chr5 134869750 134870130 + 1.33333 NA Intergenic L1M4|LINE|L1 -3830 NM_001350735 79770 Hs.741304 NM_024715 ENSG00000113621 TXNDC15 BUG|C5orf14|UNQ335 thioredoxin domain containing 15 protein-coding 240-40 chr4 57185762 57186436 + 1.33333 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -75714 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 205.5-5 chr10 50789162 50789401 + 1.33333 NA Intergenic Intergenic 49345 NM_001321959 653308 Hs.659820 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3|bA98I6.3 N-acylsphingosine amidohydrolase 2B protein-coding 560.667-7 chrX 93425306 93425994 + 1.33333 NA Intergenic Intergenic 247928 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 175.666-5 chr6 27299362 27299708 + 1.33333 NA Intergenic L1MC4|LINE|L1 12697 NM_033482 94026 Hs.729955 NM_033482 ENSG00000158553 POM121L2 POM121-L|POM121L POM121 transmembrane nucleoporin like 2 protein-coding 284.333-5 chr10 127813521 127813792 + 1.33333 NA Intergenic Intergenic 76471 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 210-25 chr2 184205530 184205817 + 1.33333 NA Intergenic L1ME3|LINE|L1 -173302 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 212.833-6 chr10 34994591 34994895 + 1.33333 NA Intergenic Intergenic 79540 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 304.499-2 chr12 117689138 117689377 + 1.33333 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 279733 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 180-8 chr10 109352437 109352661 + 1.33333 NA Intergenic L1PA16|LINE|L1 570697 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 260.166-6 chr4 141875672 141876019 + 1.33333 NA Intergenic LTR8B|LTR|ERV1 239262 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 265.999-7 chr6 145061675 145061911 + 1.33333 NA Intergenic Intergenic 625084 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 316.333-8 chr17 51000951 51001430 + 1.33333 NA intron (NM_001130527, intron 12 of 29) intron (NM_001130527, intron 12 of 29) 45688 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 285.666-8 chr2 215750860 215751147 + 1.33333 NA intron (NR_037195, intron 1 of 9) MIR|SINE|MIR 32960 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 315.666-2 chr10 60282903 60283520 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 106664 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 213.834-7 chr17 60579363 60579761 + 1.33333 NA intron (NR_126009, intron 3 of 3) AluSq|SINE|Alu 15016 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 256.333-10 chr15 61922796 61923027 + 1.33333 NA intron (NM_001018088, intron 53 of 81) intron (NM_001018088, intron 53 of 81) 137536 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 234.666-5 chr2 111167913 111168194 + 1.33333 NA 3' UTR (NM_001204112, exon 5 of 5) 3' UTR (NM_001204112, exon 5 of 5) 47139 NM_207003 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 235.333-22 chr5 31324822 31325063 + 1.33333 NA 3' UTR (NM_004932, exon 12 of 12) 3' UTR (NM_004932, exon 12 of 12) 131256 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 330.667-12 chr5 109688525 109689021 + 1.33333 NA promoter-TSS (NM_002372) promoter-TSS (NM_002372) -593 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 191.833-21 chr5 35887109 35887405 + 1.33333 NA Intergenic Intergenic 30366 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 297.5-5 chr11 106084143 106084456 + 1.33333 NA intron (NM_015423, intron 2 of 5) L1ME4c|LINE|L1 -6561 NM_152433 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 192-22 chr20 52495143 52495381 + 1.33333 NA Intergenic Intergenic -125576 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 220.667-7 chr10 44975616 44976039 + 1.33333 NA TTS (NM_007021) TTS (NM_007021) 2982 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 DEPP1 C10orf10|DEPP|FIG|Fseg DEPP1 autophagy regulator protein-coding 278.5-13 chr22 39118051 39118436 + 1.33333 NA Intergenic PrimLTR79|LTR|ERV1 20999 NM_001166002 164668 Hs.440515 NM_181773 ENSG00000100298 APOBEC3H A3H|ARP-10|ARP10 apolipoprotein B mRNA editing enzyme catalytic subunit 3H protein-coding 266-12 chr18 23593914 23594203 + 1.33333 NA Intergenic Intergenic -7552 NM_000271 4864 Hs.464779 NM_000271 ENSG00000141458 NPC1 NPC|POGZ|SLC65A1 NPC intracellular cholesterol transporter 1 protein-coding 337-2 chr10 82796229 82796711 + 1.33333 NA intron (NR_163252, intron 3 of 8) L1M8|LINE|L1 -563550 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 265.167-16 chrX 71179065 71179481 + 1.33333 NA Intergenic Intergenic 34432 NM_181303 54413 Hs.438877 NM_018977 ENSG00000196338 NLGN3 HNL3 neuroligin 3 protein-coding 291.333-26 chrX 45481365 45481918 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -23747 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 555.333-3 chr17 16588688 16590122 + 1.33333 NA Intergenic CpG -20193 NM_001346168 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 242.166-5 chr20 50939402 50939753 + 1.33333 NA intron (NM_001317036, intron 6 of 7) AluSc8|SINE|Alu -8140 NM_001347511 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 347.833-7 chr8 79044240 79044736 + 1.33333 NA Intergenic Intergenic 206959 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 210.334-6 chr15 63250878 63251113 + 1.33333 NA intron (NM_016530, intron 3 of 7) intron (NM_016530, intron 3 of 7) -26555 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 250-10 chr2 24826759 24826964 + 1.33333 NA intron (NM_001320613, intron 15 of 21) L1ME3B|LINE|L1 33436 NM_001322101 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 290.167-2 chr10 47309631 47310033 + 1.33333 NA exon (NM_004962, exon 2 of 3) exon (NM_004962, exon 2 of 3) 9635 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 199.666-5 chr14 70316134 70316330 + 1.33333 NA Intergenic L2a|LINE|L2 43451 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 246.333-39 chr8 18957661 18957979 + 1.33333 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 55883 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 383.333-7 chr19 44645659 44646181 + 1.33333 NA intron (NM_001135770, intron 1 of 5) intron (NM_001135770, intron 1 of 5) 2010 NM_001135769 5817 Hs.171844 NM_006505 ENSG00000073008 PVR CD155|HVED|NECL5|Necl-5|PVS|TAGE4 PVR cell adhesion molecule protein-coding 196.5-41 chr7 46913703 46913869 + 1.33333 NA Intergenic L1MC3|LINE|L1 -216664 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 257.333-18 chr5 26572426 26572698 + 1.33333 NA Intergenic Intergenic 466024 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 182.5-18 chr16 72626407 72626719 + 1.33333 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 38407 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 190.667-44 chr5 7827664 7827945 + 1.33333 NA 3' UTR (NM_020546, exon 25 of 25) 3' UTR (NM_020546, exon 25 of 25) 23329 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 245.834-4 chr20 21616154 21616525 + 1.33333 NA TTS (NR_109880) TTS (NR_109880) 46315 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 221-3 chr10 51491219 51491394 + 1.33333 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 191733 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 247.999-2 chr8 113378845 113379053 + 1.33333 NA intron (NM_001363185, intron 1 of 66) L2a|LINE|L2 -1797 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 356.666-7 chr7 107147721 107148227 + 1.33333 NA intron (NM_002736, intron 6 of 10) intron (NM_002736, intron 6 of 10) -20987 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 207.333-23 chr2 195938482 195938708 + 1.33333 NA intron (NM_018897, intron 19 of 64) intron (NM_018897, intron 19 of 64) 130242 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 249.834-2 chr1 161046422 161046654 + 1.33333 NA promoter-TSS (NM_207005) promoter-TSS (NM_207005) -561 NM_207005 7391 Hs.414880 NM_007122 ENSG00000158773 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 331.333 chr1 72938759 72939158 + 1.33333 NA Intergenic Intergenic -367212 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 222.666-8 chr3 188827887 188828134 + 1.33333 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 119629 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 350.333-11 chrX 78024552 78025008 + 1.33333 NA intron (NM_001282224, intron 13 of 21) L1PA15-16|LINE|L1 -55142 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 258.333-14 chr4 185005374 185005622 + 1.33333 NA Intergenic Intergenic -13343 NM_001300781 391723 Hs.531242 NM_001029887 ENSG00000187821 HELT HCM1228|HESL|Mgn|bHLHb44 helt bHLH transcription factor protein-coding 200.666-3 chr11 89236375 89236607 + 1.33333 NA intron (NM_000372, intron 3 of 4) intron (NM_000372, intron 3 of 4) 58616 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 246.334-4 chr14 52835107 52835309 + 1.33333 NA Intergenic Intergenic -43601 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 198.166-5 chr5 128151114 128151343 + 1.33333 NA intron (NM_001046, intron 13 of 26) intron (NM_001046, intron 13 of 26) 67462 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 165.667-41 chr5 39591877 39592169 + 1.33333 NA Intergenic MIRb|SINE|MIR 71592 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 257.666-3 chr2 120078843 120079100 + 1.33333 NA intron (NM_001330307, intron 10 of 16) intron (NM_001330307, intron 10 of 16) 65894 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 243.667-5 chr12 31797102 31797358 + 1.33333 NA Intergenic AluJo|SINE|Alu -4932 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 226.666-3 chr17 56787093 56787295 + 1.33333 NA Intergenic MER44C|DNA|TcMar-Tigger 46726 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 524.666 chr6 85922642 85923171 + 1.33333 NA Intergenic Intergenic -244173 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 344-10 chr19 27966072 27966511 + 1.33333 NA intron (NR_146734, intron 5 of 7) intron (NR_146734, intron 5 of 7) -172351 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 308.667-9 chr3 21473499 21473919 + 1.33333 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) 67983 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 193.833-18 chr2 51219703 51219929 + 1.33333 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 187215 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 211.333-24 chr20 58046974 58047192 + 1.33333 NA Intergenic Intergenic 43179 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 417.333-5 chr15 101495946 101496473 + 1.33333 NA Intergenic Intergenic -6225 NM_138319 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 238.5-28 chr6 131557364 131557695 + 1.33333 NA Intergenic AluSz|SINE|Alu -15697 NM_001369020 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 163.166-2 chr4 39322047 39322430 + 1.33333 NA intron (NM_001363495, intron 6 of 23) AluJb|SINE|Alu 44124 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 277.999 chr10 59838951 59839430 + 1.33333 NA intron (NM_005436, intron 2 of 8) MIRb|SINE|MIR 67366 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 273.166-5 chrX 95424301 95424583 + 1.33333 NA Intergenic L1MEc|LINE|L1 -361216 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 260.166-7 chr5 26861274 26861602 + 1.33333 NA Intergenic Intergenic 177148 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 223.166-4 chr2 165648230 165648455 + 1.33333 NA intron (NM_024969, intron 2 of 4) intron (NM_024969, intron 2 of 4) 76006 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 170.167-15 chr14 63430028 63430270 + 1.33333 NA intron (NR_104104, intron 2 of 12) intron (NR_104104, intron 2 of 12) 78089 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 207.667-47 chr9 73650480 73650836 + 1.33333 NA Intergenic L1MA8|LINE|L1 498793 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 812.167 chr17 56592002 56593125 + 1.33333 NA Intergenic (ACAGAC)n|Simple_repeat|Simple_repeat -1136 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 170.833-15 chr18 63511460 63511747 + 1.33333 NA Intergenic Intergenic 34645 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 259.333-31 chr9 70535070 70535570 + 1.33333 NA 3' UTR (NM_024971, exon 26 of 26) 3' UTR (NM_024971, exon 26 of 26) -120663 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 258.999 chr12 39706840 39707046 + 1.33333 NA intron (NM_001031748, intron 11 of 12) L1M1|LINE|L1 80760 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 258.667-28 chr7 53822423 53822787 + 1.33333 NA Intergenic Intergenic -10674 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 318.334-5 chr15 69593092 69593545 + 1.33333 NA intron (NR_126438, intron 1 of 3) intron (NR_126438, intron 1 of 3) 1118 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 354.333 chr1 78619608 78620024 + 1.33333 NA promoter-TSS (NM_006820) promoter-TSS (NM_006820) -632 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 228-29 chr3 25810062 25810275 + 1.33333 NA Intergenic MIRc|SINE|MIR 20078 NM_017897 54995 Hs.55781 NM_017897 ENSG00000151093 OXSM CEM1|FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 274.333-13 chr17 67492102 67492364 + 1.33333 NA intron (NM_181671, intron 1 of 9) MLT1D|LTR|ERVL-MaLR -20648 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 200.333-4 chr1 61700630 61700844 + 1.33333 NA intron (NM_032027, intron 4 of 6) intron (NM_032027, intron 4 of 6) 24404 NM_032027 83941 Hs.656790 NM_032027 ENSG00000162604 TM2D1 BBP TM2 domain containing 1 protein-coding 212.166-7 chr5 25607480 25607941 + 1.33333 NA Intergenic HERV4_I-int|LTR|ERV1 416757 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 324.501-2 chr20 16761200 16761682 + 1.33333 NA Intergenic Intergenic 13088 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 327.333-5 chr11 36594035 36594482 + 1.33333 NA promoter-TSS (NM_138787) promoter-TSS (NM_138787) -235 NM_001276727 119710 Hs.159376 NM_138787 ENSG00000166352 C11orf74 HEPIS|NWC chromosome 11 open reading frame 74 protein-coding 315.667-17 chr8 124695105 124695663 + 1.33333 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 33089 NM_001363295 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 231.333-38 chr9 35789387 35789747 + 1.33333 NA Intergenic Intergenic -2842 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 199.333-29 chr2 49974968 49975260 + 1.33333 NA promoter-TSS (NM_001320156) promoter-TSS (NM_001320156) -911 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 246.166-5 chr5 32415696 32416033 + 1.33333 NA intron (NM_016107, intron 4 of 19) intron (NM_016107, intron 4 of 19) -21389 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 306.501-8 chr7 3392524 3393109 + 1.33333 NA intron (NM_152744, intron 1 of 44) L1MB4|LINE|L1 91564 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 272.667-18 chr22 34805942 34806533 + 1.33333 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 191679 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 267.666-3 chr21 16088964 16089196 + 1.33333 NA intron (NR_111005, intron 1 of 6) L1ME1|LINE|L1 17966 NR_111005 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 219.333-44 chr8 137961878 137962168 + 1.33333 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 121522 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 426.166 chr10 33487000 33487481 + 1.33333 NA Intergenic Intergenic -152335 NM_001244973 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 291.833-11 chr5 50963527 50963749 + 1.33333 NA Intergenic Intergenic 6549 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 202-31 chr6 39289420 39290085 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR 24667 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 236-8 chr15 32950935 32951240 + 1.33333 NA intron (NM_001277313, intron 9 of 20) intron (NM_001277313, intron 9 of 20) 117087 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 286.333-3 chr14 66497000 66497303 + 1.33333 NA intron (NR_110308, intron 8 of 9) intron (NR_110308, intron 8 of 9) -10256 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 245.833-23 chr5 165557590 165557848 + 1.33333 NA Intergenic L1MEg|LINE|L1 1087440 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 336.5-6 chr17 14738055 14738435 + 1.33333 NA Intergenic Intergenic -276560 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 173-29 chr22 36698150 36698299 + 1.33333 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 4634 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 193.167-28 chr6 71970385 71970647 + 1.33333 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) 83813 NM_001350412 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 292.333-13 chr20 51797319 51797684 + 1.33333 NA intron (NM_001318031, intron 1 of 3) intron (NM_001318031, intron 1 of 3) 5020 NM_001318031 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 286.499 chr7 150421310 150421567 + 1.33333 NA Intergenic Intergenic -12216 NR_034033 285972 Hs.647110 NR_034033 ENSG00000242258 LINC00996 - long intergenic non-protein coding RNA 996 ncRNA 209-17 chr2 70019644 70019916 + 1.33333 NA intron (NR_033872, intron 7 of 10) L1MA8|LINE|L1 -57515 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 172.333-49 chr6 146778917 146779096 + 1.33333 NA intron (NM_024694, intron 29 of 35) L1M4|LINE|L1 24818 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 389.999-2 chr20 5328697 5329091 + 1.33333 NA Intergenic Intergenic -12162 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 191.333-21 chr2 162891292 162891602 + 1.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -52680 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 230-44 chr9 82499273 82499547 + 1.33333 NA Intergenic L1MEg|LINE|L1 510638 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 354.667-10 chr3 174749744 174750330 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -109297 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 226.666-2 chr12 39781011 39781240 + 1.33333 NA intron (NM_052885, intron 7 of 9) intron (NM_052885, intron 7 of 9) 154942 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 349.166 chr10 97719462 97719869 + 1.33333 NA Intergenic MIRc|SINE|MIR 5935 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 287.166-2 chr3 33362298 33362654 + 1.33333 NA intron (NM_012157, intron 4 of 14) intron (NM_012157, intron 4 of 14) 77902 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 270-34 chr6 138288844 138289203 + 1.33333 NA intron (NM_020340, intron 17 of 33) AluSp|SINE|Alu -70533 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 460 chr1 202207500 202208138 + 1.33333 NA intron (NM_021636, intron 1 of 17) MIR|SINE|MIR 4107 NM_021636 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 294.5-7 chr12 125182121 125182517 + 1.33333 NA Intergenic L1MB3|LINE|L1 -4067 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 311.5-4 chr14 59582810 59583358 + 1.33333 NA Intergenic AluSq2|SINE|Alu -6272 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 357.666 chr11 90373789 90374092 + 1.33333 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 122708 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 363.333-3 chr2 40671312 40671800 + 1.33333 NA Intergenic Intergenic -159121 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 357.333-2 chr1 111355674 111356150 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 9290 NM_181643 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 435.666 chr1 86501089 86501730 + 1.33333 NA Intergenic L4_A_Mam|LINE|RTE-X 32482 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 278.833-14 chrX 132273174 132273529 + 1.33333 NA intron (NR_110410, intron 2 of 2) L1MB7|LINE|L1 -53871 NR_073150 57826 Hs.119889 NM_021183 ENSG00000123728 RAP2C - RAP2C, member of RAS oncogene family protein-coding 217.999 chr19 14048789 14048969 + 1.33333 NA intron (NM_004843, intron 8 of 13) LTR16C|LTR|ERVL 8759 NM_001367327 342979 Hs.444298 NM_001145028 ENSG00000187867 PALM3 - paralemmin 3 protein-coding 326.666-8 chr7 83947202 83947504 + 1.33333 NA Intergenic Intergenic 247436 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 222.833-19 chr8 31252215 31252520 + 1.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -219011 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 211-16 chr15 91851336 91851657 + 1.33333 NA Intergenic Intergenic -2212 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 304.666-4 chr9 79130034 79130475 + 1.33333 NA Intergenic Intergenic 15412 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 249.999-4 chr6 72963021 72963323 + 1.33333 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 4581 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 249.333-19 chr2 235271152 235271413 + 1.33333 NA Intergenic Intergenic -222761 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 237.333-11 chr12 91355661 91355841 + 1.33333 NA Intergenic Intergenic -172934 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 325.666-7 chr4 80526444 80526746 + 1.33333 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 190875 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 288-14 chr2 35393125 35393535 + 1.33333 NA Intergenic L1MEf|LINE|L1 -78075 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 395.666-3 chr21 46263488 46263918 + 1.33333 NA intron (NM_003906, intron 13 of 27) AluSz|SINE|Alu 21908 NM_003906 8888 Hs.389037 NM_003906 ENSG00000160294 MCM3AP GANP|MAP80|PNRIID|SAC3 minichromosome maintenance complex component 3 associated protein protein-coding 242.167-26 chr7 22936250 22936586 + 1.33333 NA 3' UTR (NM_001363466, exon 12 of 12) 3' UTR (NM_001363466, exon 12 of 12) 77712 NM_001363467 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 346.666-2 chr5 114514339 114514801 + 1.33333 NA intron (NR_130785, intron 3 of 12) L1MEd|LINE|L1 -61471 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 164-53 chr7 107463092 107463269 + 1.33333 NA intron (NM_181733, intron 6 of 20) intron (NM_181733, intron 6 of 20) -6877 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 176.666-3 chr11 17584942 17585121 + 1.33333 NA intron (NM_001277269, intron 22 of 54) L1ME3A|LINE|L1 37658 NM_001292063 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 274.667-22 chr7 4457835 4458138 + 1.33333 NA Intergenic Intergenic -224309 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 326.666-4 chr14 69317353 69317614 + 1.33333 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 57325 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 213.333-13 chr17 69044758 69045009 + 1.33333 NA intron (NM_080283, intron 4 of 38) intron (NM_080283, intron 4 of 38) 16044 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 402.333-2 chr21 23437857 23438422 + 1.33333 NA Intergenic Intergenic -53304 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 285.666 chr1 26862605 26863011 + 1.33333 NA promoter-TSS (NM_006142) promoter-TSS (NM_006142) -341 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 380.5-2 chr10 43999099 43999399 + 1.33333 NA Intergenic Intergenic 86847 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 196.333-48 chr8 46313260 46313431 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 304298 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 273-28 chr8 58718845 58719053 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -59096 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 246.666-5 chr20 53466751 53466942 + 1.33333 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -85924 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 254.667-9 chr15 48373580 48373888 + 1.33333 NA Intergenic Intergenic 41537 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 174.667-27 chr2 204259342 204259875 + 1.33333 NA Intergenic Intergenic -285867 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 246.667-5 chr11 75710119 75710613 + 1.33333 NA Intergenic L1M4|LINE|L1 -7472 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 184.166 chr1 93735851 93736087 + 1.33333 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) 39414 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 244-27 chr5 73370725 73371056 + 1.33333 NA Intergenic Intergenic 32984 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 244.666-5 chr15 56141676 56141941 + 1.33333 NA intron (NM_001370561, intron 7 of 11) intron (NM_001370561, intron 7 of 11) 48124 NM_001368074 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 249-19 chr2 112643855 112644100 + 1.33333 NA non-coding (NR_033871, exon 2 of 5) non-coding (NR_033871, exon 2 of 5) 203 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 306.666-2 chr12 55351514 55351760 + 1.33333 NA Intergenic Intergenic -13474 NM_001005497 390323 Hs.554554 NM_001005497 ENSG00000187857 OR6C75 - olfactory receptor family 6 subfamily C member 75 protein-coding 227.833 chr1 195809132 195809470 + 1.33333 NA Intergenic Intergenic 279414 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 288.833-2 chr11 32366421 32366964 + 1.33333 NA Intergenic Intergenic 33708 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 164.333-36 chr4 4333449 4333573 + 1.33333 NA Intergenic Intergenic 43260 NR_138481 166793 Hs.419997 NM_145291 ENSG00000168826 ZBTB49 ZNF509 zinc finger and BTB domain containing 49 protein-coding 170-8 chr11 55947408 55947587 + 1.33333 NA Intergenic Intergenic -11097 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 263.5-28 chr7 83253465 83253954 + 1.33333 NA Intergenic Intergenic -90825 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 286.999-3 chr2 18210194 18210529 + 1.33333 NA Intergenic Intergenic 331694 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 464 chr19 28064781 28065147 + 1.33333 NA Intergenic HAL1M8|LINE|L1 -271024 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 290.5-22 chr5 33698250 33698547 + 1.33333 NA intron (NM_001324512, intron 3 of 21) Tigger19a|DNA|TcMar-Tigger 193592 NM_001324512 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 201.5-22 chr2 98201899 98202220 + 1.33333 NA intron (NR_144297, intron 12 of 18) L1MD|LINE|L1 52526 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 214-55 chr9 100136316 100136586 + 1.33333 NA intron (NR_134606, intron 3 of 16) L1MC5a|LINE|L1 37208 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 281.666-7 chr9 120985707 120985965 + 1.33333 NA intron (NM_001735, intron 25 of 40) LTR38A1|LTR|ERV1 -33005 NR_148450 110599590 NR_148450 C5-OT1 C5T1LNCRNA C5 3' UTR overlapping transcript 1 ncRNA 370.834-5 chr4 39695513 39696181 + 1.33333 NA Intergenic Intergenic -2289 NM_005339 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 175.333-41 chr3 120892459 120892654 + 1.33333 NA Intergenic Intergenic -15649 NM_001308330 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 243.833-4 chr1 235660931 235661146 + 1.33333 NA TTS (NM_001301365) TTS (NM_001301365) -10284 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 211.167-10 chr18 73614687 73615017 + 1.33333 NA Intergenic Intergenic 289911 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 331-17 chr4 64281472 64281973 + 1.33333 NA intron (NM_001363796, intron 9 of 11) intron (NM_001363796, intron 9 of 11) 127728 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 176.833-5 chr11 45333644 45333840 + 1.33333 NA Intergenic MLT1L|LTR|ERVL-MaLR -21629 NR_120558 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 321.499 chr18 64355505 64355825 + 1.33333 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -95610 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 185.333-25 chr2 25567066 25567221 + 1.33333 NA intron (NM_001320937, intron 8 of 8) intron (NM_001320937, intron 8 of 8) 83079 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 283.666-3 chr19 46115579 46116034 + 1.33333 NA Intergenic Intergenic 8882 NM_207393 388555 Hs.365496 NM_207393 ENSG00000188624 IGFL3 UNQ483 IGF like family member 3 protein-coding 222.833-18 chr7 106708677 106709043 + 1.33333 NA Intergenic Intergenic -47702 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 222.667-24 chr2 215871118 215871433 + 1.33333 NA Intergenic LTR33|LTR|ERVL -27739 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 238.667-15 chr3 21752570 21752982 + 1.33333 NA Intergenic Intergenic -1566 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 271.333-5 chr12 28492348 28492700 + 1.33333 NA intron (NM_001352082, intron 13 of 13) MIRc|SINE|MIR -301786 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 293.333-2 chr1 160705640 160706076 + 1.33333 NA intron (NM_001778, intron 1 of 3) MER20|DNA|hAT-Charlie 5964 NM_001778 962 Hs.243564 NM_001778 ENSG00000117091 CD48 BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48 CD48 molecule protein-coding 357-19 chr8 109797995 109798444 + 1.33333 NA Intergenic Intergenic -106428 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 297.5-3 chr1 188212944 188213364 + 1.33333 NA Intergenic L1MA4|LINE|L1 769526 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 166.667-32 chr2 218995980 218996218 + 1.33333 NA Intergenic Intergenic -2677 NM_057093 1412 Hs.415790 NM_057093 ENSG00000163499 CRYBA2 CTRCT42 crystallin beta A2 protein-coding 274.5-7 chr14 20678754 20679127 + 1.33333 NA Intergenic L1MEg|LINE|L1 -5237 NM_001145 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 202.5-22 chr15 59982304 59982552 + 1.33333 NA Intergenic L1MEf|LINE|L1 -21883 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 282.666-7 chr5 80548697 80549078 + 1.33333 NA Intergenic L1PB1|LINE|L1 21393 NM_001004441 340120 Hs.519404 NM_001004441 ENSG00000189127 ANKRD34B DP58 ankyrin repeat domain 34B protein-coding 351-5 chr18 54646775 54647230 + 1.33333 NA Intergenic Intergenic 55843 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 167.833 chr1 40718264 40718488 + 1.33333 NA intron (NM_001142590, intron 3 of 14) intron (NM_001142590, intron 3 of 14) 9010 NM_001308115 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 231.666-7 chr5 144737062 144737505 + 1.33333 NA Intergenic L1PA16|LINE|L1 531892 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 278.334-2 chr1 230120821 230121269 + 1.33333 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 53807 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 330.999-2 chr8 130525794 130526098 + 1.33333 NA Intergenic AluSx|SINE|Alu -82272 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 228.333-8 chr10 113555227 113555426 + 1.33333 NA intron (NM_004132, intron 1 of 12) intron (NM_004132, intron 1 of 12) 2273 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 353-15 chr8 117627180 117627711 + 1.33333 NA Intergenic MER58A|DNA|hAT-Charlie 106732 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 186-14 chr17 51141411 51141826 + 1.33333 NA Intergenic AluSg|SINE|Alu -11918 NR_037149 654364 Hs.463456 NM_001018136 ENSG00000011052 NME1-NME2 NM23-LV|NMELV NME1-NME2 readthrough protein-coding 292.666-7 chr4 41209403 41209669 + 1.33333 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 5006 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 291.167-16 chr7 141585772 141586106 + 1.33333 NA intron (NM_018238, intron 2 of 15) intron (NM_018238, intron 2 of 15) 34529 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 167.666-4 chr12 48682236 48682463 + 1.33333 NA promoter-TSS (NM_017822) promoter-TSS (NM_017822) -111 NM_017822 54934 Hs.505412 NM_017822 ENSG00000139620 KANSL2 C12orf41|NSL2 KAT8 regulatory NSL complex subunit 2 protein-coding 240.666-5 chr16 67007524 67007759 + 1.33333 NA intron (NM_001364782, intron 13 of 13) AluJo|SINE|Alu 7102 NM_001190201 283848 Hs.346947 NM_173815 ENSG00000172824 CES4A CES6|CES8 carboxylesterase 4A protein-coding 358.833-5 chr19 6481626 6482036 + 1.33333 NA promoter-TSS (NM_001290331) promoter-TSS (NM_001290331) -44 NM_024898 79958 Hs.236449 NM_024898 ENSG00000205744 DENND1C FAM31C DENN domain containing 1C protein-coding 221-13 chr15 95441593 95441921 + 1.33333 NA intron (NR_027133, intron 1 of 5) intron (NR_027133, intron 1 of 5) 8664 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 317.833-15 chr9 85609867 85610470 + 1.33333 NA intron (NM_015239, intron 17 of 25) intron (NM_015239, intron 17 of 25) 131861 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 303-16 chr5 102013366 102013911 + 1.33333 NA Intergenic Intergenic 282646 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 279.166-8 chr9 2087660 2088143 + 1.33333 NA intron (NM_139045, intron 18 of 32) intron (NM_139045, intron 18 of 32) 65956 NM_001289396 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 190.5-43 chr6 93439118 93439288 + 1.33333 NA Intergenic Intergenic -19621 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 372.5-11 chr3 51384609 51385230 + 1.33333 NA promoter-TSS (NM_006010) promoter-TSS (NM_006010) -372 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 329.666-3 chr14 43272684 43273044 + 1.33333 NA Intergenic Intergenic 1234419 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 351.333-13 chr6 141463471 141463867 + 1.33333 NA Intergenic Intergenic 625130 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 309.333-23 chr8 34797033 34797454 + 1.33333 NA intron (NR_125746, intron 2 of 3) intron (NR_125746, intron 2 of 3) 13322 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 166.667-27 chr2 56869898 56870107 + 1.33333 NA Intergenic Intergenic -684232 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 215.167-14 chr17 67259852 67260140 + 1.33333 NA intron (NR_136398, intron 2 of 3) intron (NR_136398, intron 2 of 3) -14800 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 328.667-4 chr11 20461154 20461655 + 1.33333 NA intron (NM_005788, intron 11 of 15) L2c|LINE|L2 73688 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 206-11 chr14 22118899 22119089 + 1.33333 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 313759 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 444.333-4 chr5 2797723 2798128 + 1.33333 NA Intergenic Intergenic 45794 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 253.333-15 chr20 41029553 41029817 + 1.33333 NA intron (NM_003286, intron 2 of 20) CpG-17737 863 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 184.666-4 chr2 15169865 15170145 + 1.33333 NA intron (NR_052013, intron 50 of 50) intron (NR_052013, intron 50 of 50) 391329 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 312.667-8 chr14 22268460 22269046 + 1.33333 NA Intergenic LTR16C|LTR|ERVL 164000 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 230-28 chr2 217455829 217456087 + 1.33333 NA intron (NR_026597, intron 3 of 12) intron (NR_026597, intron 3 of 12) 173225 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 261.666-12 chr7 31659793 31660202 + 1.33333 NA Intergenic THE1C|LTR|ERVL-MaLR -27020 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 261.666-11 chr4 164011043 164011436 + 1.33333 NA intron (NM_001166373, intron 2 of 7) L1M1|LINE|L1 186472 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 215.666-3 chr2 110819231 110819486 + 1.33333 NA intron (NM_001371254, intron 9 of 18) intron (NM_001371254, intron 9 of 18) 86785 NM_001371254 275-31 chr8 88244237 88244515 + 1.33333 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 83107 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 222.833 chr1 34859624 34860071 + 1.33333 NA promoter-TSS (NM_001164824) promoter-TSS (NM_001164824) -98 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 264.5-29 chr9 36557521 36557798 + 1.33333 NA Intergenic Intergenic -15203 NM_001256687 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 207.333-40 chr5 160450720 160450887 + 1.33333 NA Intergenic Intergenic -17448 NR_132748 107075116 Hs.735831 NR_132748 ENSG00000253522 MIR3142HG - MIR3142 host gene ncRNA 253.999 chr12 115895201 115895397 + 1.33333 NA Intergenic Intergenic 253355 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 343-5 chr11 94002542 94002956 + 1.33333 NA Intergenic Intergenic -18605 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 197.333-5 chr11 19019420 19019658 + 1.33333 NA Intergenic Intergenic 40478 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 242.333-3 chr1 184754884 184755094 + 1.33333 NA promoter-TSS (NM_001319960) promoter-TSS (NM_001319960) -131 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 380.999 chr19 3126188 3126625 + 1.33333 NA Intergenic MIR1_Amn|SINE|MIR -9627 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 G protein subunit alpha 15 protein-coding 354-11 chr3 13092290 13092653 + 1.33333 NA Intergenic Intergenic -19042 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 741.166 chr2 72490689 72491453 + 1.33333 NA intron (NR_135774, intron 16 of 19) intron (NR_135774, intron 16 of 19) 334962 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 178-26 chr3 153065813 153065996 + 1.33333 NA Intergenic Intergenic -96322 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 277-2 chr1 33502767 33503010 + 1.33333 NA Intergenic Intergenic 30243 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 370.333-5 chr18 8459271 8459816 + 1.33333 NA Intergenic Intergenic -92509 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 178.333-9 chr12 40064374 40064591 + 1.33333 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 41599 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 189.333-37 chr7 25712383 25712797 + 1.33333 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 38442 NR_157814 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 205.667-14 chr13 113907859 113908157 + 1.33333 NA intron (NM_001278674, intron 3 of 7) intron (NM_001278674, intron 3 of 7) 12905 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 294.334-3 chr19 41994095 41994553 + 1.33333 NA promoter-TSS (NM_001256214) promoter-TSS (NM_001256214) -94 NM_152296 478 Hs.515427 NM_152296 ENSG00000105409 ATP1A3 AHC2|ATP1A1|CAPOS|DYT12|RDP ATPase Na+/K+ transporting subunit alpha 3 protein-coding 348.666-4 chr12 5367560 5367958 + 1.33333 NA Intergenic Intergenic -64349 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 200.666-7 chr2 192179888 192180148 + 1.33333 NA intron (NM_001305134, intron 3 of 9) intron (NM_001305134, intron 3 of 9) 14915 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 310.5-7 chr14 102234979 102235525 + 1.33333 NA intron (NR_148552, intron 6 of 9) HERVFH21-int|LTR|ERV1 174 NM_001353832 5891 Hs.36859 NM_014226 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 235-18 chr2 205346462 205346763 + 1.33333 NA intron (NM_205863, intron 18 of 21) L3b|LINE|CR1 -335888 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 196.167-13 chr15 23856930 23857287 + 1.33333 NA Intergenic Intergenic -118039 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 229.667-11 chr14 60464947 60465246 + 1.33333 NA intron (NM_174978, intron 11 of 17) L1MEi|LINE|L1 20967 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 271.667-20 chr6 52359475 52359866 + 1.33333 NA Intergenic Intergenic -2481 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 266.166 chr11 59573028 59573367 + 1.33333 NA Intergenic Intergenic 21961 NR_036120 100422880 NR_036120 ENSG00000264559 MIR3162 mir-3162 microRNA 3162 ncRNA 261-16 chr3 25889151 25889491 + 1.33333 NA Intergenic LTR82B|LTR|ERVL -15626 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 326-17 chr8 69400050 69400490 + 1.33333 NA Intergenic UCON74|DNA?|DNA? 47974 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 311.833-6 chr8 144302711 144303083 + 1.33333 NA intron (NM_005526, intron 1 of 12) L1M5|LINE|L1 11293 NM_005526 3297 Hs.530227 NM_005526 ENSG00000185122 HSF1 HSTF1 heat shock transcription factor 1 protein-coding 191.5-46 chr7 37502560 37502792 + 1.33333 NA Intergenic Intergenic -53350 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 180-2 chr1 43887865 43888103 + 1.33333 NA intron (NR_073018, intron 6 of 10) intron (NR_073018, intron 6 of 10) -45336 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 166-16 chr12 17762175 17762363 + 1.33333 NA Intergenic L1M6|LINE|L1 88970 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 219.333-23 chr2 67860699 67861001 + 1.33333 NA Intergenic Intergenic -35288 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 211.333-16 chr15 64097703 64097896 + 1.33333 NA intron (NM_003099, intron 1 of 14) intron (NM_003099, intron 1 of 14) 1817 NM_003099 6642 Hs.188634 NM_003099 ENSG00000028528 SNX1 HsT17379|VPS5 sorting nexin 1 protein-coding 281.166 chr2 154758018 154758352 + 1.33333 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 59490 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 238.166-2 chr12 57837731 57837937 + 1.33333 NA intron (NM_005730, intron 1 of 7) intron (NM_005730, intron 1 of 7) 8895 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 567.666 chr2 68195970 68197034 + 1.33333 NA intron (NM_000945, intron 2 of 5) intron (NM_000945, intron 2 of 5) 38614 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 442.833-6 chr9 70230947 70231585 + 1.33333 NA intron (NR_039990, intron 2 of 3) L1MEd|LINE|L1 27608 NR_039990 100507299 Hs.556816 NR_039990 SMC5-AS1 MAMDC2-AS2 SMC5 antisense RNA 1 (head to head) ncRNA 228.666-3 chr10 117274345 117274646 + 1.33333 NA intron (NM_003054, intron 15 of 15) intron (NM_003054, intron 15 of 15) 33381 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 244.666-2 chr1 92291338 92291598 + 1.33333 NA exon (NM_001319683, exon 4 of 18) exon (NM_001319683, exon 4 of 18) 7519 NM_053274 11146 Hs.49105 NM_007070 ENSG00000174842 GLMN FAP|FAP48|FAP68|FKBPAP|GLML|GVM|VMGLOM glomulin, FKBP associated protein protein-coding 360.499-3 chr5 141428456 141428794 + 1.33333 NA TTS (NR_001297) TTS (NR_001297) -1882 NM_032094 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 304.5-21 chr9 30201552 30201959 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR 206699 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 313.666-2 chr1 79475301 79475610 + 1.33333 NA Intergenic Intergenic -468725 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 314.999-2 chr20 1346546 1346881 + 1.33333 NA intron (NR_040047, intron 1 of 2) L1MC2|LINE|L1 -17574 NM_080489 27111 Hs.657015 NM_015685 ENSG00000125775 SDCBP2 SITAC|SITAC18|ST-2|ST2 syndecan binding protein 2 protein-coding 375.333-2 chr10 57650274 57650722 + 1.33333 NA Intergenic L1MA1|LINE|L1 -345939 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 184-2 chr1 151332195 151332464 + 1.33333 NA Intergenic Intergenic -4614 NM_001369623 5298 Hs.632465 NM_002651 ENSG00000143393 PI4KB NPIK|PI4K-BETA|PI4K92|PI4KBETA|PI4KIIIBETA|PIK4CB phosphatidylinositol 4-kinase beta protein-coding 277.667-26 chrX 73917398 73917726 + 1.33333 NA Intergenic Intergenic -26762 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 460.834-4 chr5 43477889 43478439 + 1.33333 NA intron (NM_022483, intron 1 of 2) intron (NM_022483, intron 1 of 2) 5701 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 264.667-4 chr12 99183532 99183786 + 1.33333 NA intron (NM_152788, intron 14 of 25) (CAA)n|Simple_repeat|Simple_repeat -28569 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 662.833 chr11 35592996 35593846 + 1.33333 NA Intergenic MLT1H|LTR|ERVL-MaLR -25039 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 266-8 chr15 69262799 69263087 + 1.33333 NA intron (NM_001324093, intron 5 of 5) Tigger4b|DNA|TcMar-Tigger -35969 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 190.667-55 chr8 89602554 89602820 + 1.33333 NA Intergenic Intergenic 155024 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 315.333-7 chr12 39592314 39592677 + 1.33333 NA intron (NM_005164, intron 6 of 9) intron (NM_005164, intron 6 of 9) 27308 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 240.666 chr1 246280812 246281000 + 1.33333 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 136506 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 300.833-6 chr2 35967854 35968165 + 1.33333 NA Intergenic Charlie1|DNA|hAT-Charlie 387561 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 280.834 chr12 8595527 8596060 + 1.33333 NA Intergenic AluSz|SINE|Alu 17066 NM_001330343 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 248.333-19 chr20 57038399 57038747 + 1.33333 NA Intergenic L2b|LINE|L2 -175123 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 387.499-2 chr3 129251662 129252058 + 1.33333 NA intron (NM_016128, intron 2 of 23) AluSq2|SINE|Alu 2254 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 210.333-21 chr2 235476157 235476396 + 1.33333 NA Intergenic L1PA16|LINE|L1 -17767 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 378-19 chr6 152485251 152485893 + 1.33333 NA intron (NM_182961, intron 12 of 145) intron (NM_182961, intron 12 of 145) 105042 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 264.666-9 chr2 27679023 27679338 + 1.33333 NA intron (NM_018158, intron 8 of 13) L1ME4b|LINE|L1 -15340 NM_001282732 9913 Hs.6232 NM_014860 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H SPT7 like, STAGA complex gamma subunit protein-coding 305.166-5 chr8 8289225 8289697 + 1.33333 NA Intergenic Intergenic 60891 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 293-25 chr8 119156193 119156591 + 1.33333 NA Intergenic Intergenic -51971 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 176.666-9 chr8 101503266 101503404 + 1.33333 NA intron (NM_001330593, intron 1 of 15) L1ME4a|LINE|L1 10896 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 464.333-7 chr7 31742035 31743009 + 1.33333 NA Intergenic FLAM_A|SINE|Alu 55307 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 459.5-7 chr8 121357197 121357868 + 1.33333 NA Intergenic Intergenic -281814 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 208-34 chr4 172331705 172331909 + 1.33333 NA intron (NM_001034845, intron 4 of 12) L1MB1|LINE|L1 357110 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 198.166-4 chr5 75300475 75300690 + 1.33333 NA Intergenic Intergenic -36586 NM_001364187 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 173.167-17 chr2 49255707 49255927 + 1.33333 NA Intergenic Intergenic -101290 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 346-11 chr9 120956761 120957157 + 1.33333 NA intron (NM_001735, intron 39 of 40) L1PA15|LINE|L1 -4128 NR_148450 110599590 NR_148450 C5-OT1 C5T1LNCRNA C5 3' UTR overlapping transcript 1 ncRNA 196.167-21 chr2 24744189 24744463 + 1.33333 NA intron (NM_001362950, intron 19 of 23) Charlie24|DNA|hAT-Charlie -48789 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 254-25 chr7 92052006 92052297 + 1.33333 NA intron (NM_147185, intron 21 of 49) intron (NM_147185, intron 21 of 49) 82326 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 169.834-4 chr14 70084878 70085170 + 1.33333 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -4807 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 271.666-9 chr8 92536989 92537323 + 1.33333 NA Intergenic L1MA3|LINE|L1 118338 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 227.333-10 chr14 50493411 50493717 + 1.33333 NA intron (NM_198794, intron 3 of 31) L1MB2|LINE|L1 39005 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 234.666-10 chr8 110658406 110658627 + 1.33333 NA Intergenic L1PA17|LINE|L1 368917 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 227.667-44 chr9 119375697 119376101 + 1.33333 NA Intergenic Intergenic -6464 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 193.333-19 chr14 63351269 63351818 + 1.33333 NA Intergenic Charlie1a|DNA|hAT-Charlie -32608 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 254-9 chr11 132349981 132350267 + 1.33333 NA Intergenic Intergenic 65822 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 165.333-15 chr12 128063468 128063711 + 1.33333 NA Intergenic MLT1G|LTR|ERVL-MaLR -36423 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 213.333-6 chr12 9668699 9668905 + 1.33333 NA promoter-TSS (NR_036693) promoter-TSS (NR_036693) -911 NM_013269 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 222.167-27 chr3 46765235 46765751 + 1.33333 NA Intergenic AluSq2|SINE|Alu -8638 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 269.666-2 chr5 36882907 36883294 + 1.33333 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 6331 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 296.999 chr1 94819502 94819747 + 1.33333 NA promoter-TSS (NM_001114106) promoter-TSS (NM_001114106) 608 NR_160780 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 216.5-34 chr4 186137672 186137869 + 1.33333 NA intron (NM_001367768, intron 1 of 13) intron (NM_001367768, intron 1 of 13) -6517 NM_001006655 25854 Hs.744961 NM_015398 ENSG00000109794 FAM149A MST119|MSTP119 family with sequence similarity 149 member A protein-coding 259.5-20 chr20 14879614 14879950 + 1.33333 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 49736 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 342-4 chr2 5496330 5496701 + 1.33333 NA Intergenic Intergenic 194603 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 211-17 chr16 8852308 8852761 + 1.33333 NA TTS (NM_001278261) TTS (NM_001278261) 3065 NR_147908 100130283 Hs.735515 NR_147908 LOC100130283 - uncharacterized LOC100130283 ncRNA 172-10 chr12 64759510 64759807 + 1.33333 NA promoter-TSS (NM_002076) promoter-TSS (NM_002076) 161 NM_001330187 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 529.334-2 chr8 28060808 28061615 + 1.33333 NA intron (NM_001010906, intron 7 of 18) intron (NM_001010906, intron 7 of 18) 22725 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 346.333-3 chr14 48273850 48274228 + 1.33333 NA Intergenic Intergenic -479025 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 264.333-4 chr10 92502916 92503261 + 1.33333 NA intron (NR_136399, intron 11 of 25) intron (NR_136399, intron 11 of 25) -5327 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 279.166-3 chr15 73572404 73572738 + 1.33333 NA intron (NM_012428, intron 5 of 8) intron (NM_012428, intron 5 of 8) -3028 NR_103844 101241892 Hs.656678 NR_103844 ENSG00000281183 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 ncRNA 306.5-14 chr21 28442825 28443238 + 1.33333 NA Intergenic Intergenic -96287 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 277.666 chr10 54375552 54375837 + 1.33333 NA intron (NM_001354411, intron 4 of 34) intron (NM_001354411, intron 4 of 34) -110536 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 272.5-22 chr4 162241578 162241965 + 1.33333 NA Intergenic Intergenic -77737 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 222.833-11 chr15 82053239 82053493 + 1.33333 NA Intergenic Intergenic -7348 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 219.166 chr12 60853040 60853244 + 1.33333 NA Intergenic Intergenic 1163772 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 237.499-2 chr3 102227731 102227940 + 1.33333 NA Intergenic Intergenic 64130 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 248.166-2 chr9 78986703 78986947 + 1.33333 NA Intergenic Intergenic 158841 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 228.667-33 chr4 86933535 86934027 + 1.33333 NA intron (NR_038841, intron 1 of 2) intron (NR_038841, intron 1 of 2) 1069 NR_038841 100506746 Hs.657766 NR_038841 AFF1-AS1 - AFF1 antisense RNA 1 ncRNA 260.666-3 chr22 24683897 24684140 + 1.33333 NA Intergenic L1MC5a|LINE|L1 -24871 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 282-13 chr12 91811685 91812143 + 1.33333 NA Intergenic Intergenic 329799 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 245.333-17 chr2 53253180 53253438 + 1.33333 NA Intergenic Intergenic -514474 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 226.166-2 chr16 89240543 89240772 + 1.33333 NA Intergenic AluY|SINE|Alu 22954 NR_037705 197320 Hs.647385 NM_182531 ENSG00000170100 ZNF778 - zinc finger protein 778 protein-coding 325.499-3 chr17 59623418 59623675 + 1.33333 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 3651 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 301.167-9 chr2 161272430 161272894 + 1.33333 NA Intergenic Intergenic -18019 NR_110593 101929512 Hs.666488 NR_110593 LOC101929512 - uncharacterized LOC101929512 ncRNA 368.667-5 chr14 67168414 67168829 + 1.33333 NA intron (NM_001024218, intron 19 of 21) intron (NM_001024218, intron 19 of 21) -20819 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 319.167-13 chr3 132780259 132780971 + 1.33333 NA intron (NR_002811, intron 3 of 10) LTR16A|LTR|ERVL -58156 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 287.499 chr8 50880625 50880855 + 1.33333 NA Intergenic L1MCa|LINE|L1 716609 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 344.833-13 chrX 37060967 37061350 + 1.33333 NA Intergenic Intergenic -17366 NM_001271682 441490 NM_001271682 FTH1P18 FTHL18 ferritin heavy chain 1 pseudogene 18 protein-coding 254.166-3 chr17 56756716 56757027 + 1.33333 NA Intergenic Intergenic 77049 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 298.333-15 chr7 16792757 16793165 + 1.33333 NA intron (NM_006408, intron 7 of 7) intron (NM_006408, intron 7 of 7) 12038 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 453-6 chr8 67533206 67533608 + 1.33333 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 189573 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 245.333-11 chr15 57303903 57304206 + 1.33333 NA intron (NR_024433, intron 1 of 2) intron (NR_024433, intron 1 of 2) 3689 NR_024433 283663 Hs.181297 NR_024433 ENSG00000247982 LINC00926 - long intergenic non-protein coding RNA 926 ncRNA 299.333-21 chr8 134929491 134929906 + 1.33333 NA Intergenic MLT1F|LTR|ERVL-MaLR 79763 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 266.666-8 chr2 173401683 173401895 + 1.33333 NA Intergenic Intergenic 46917 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 196-29 chr3 20732914 20733078 + 1.33333 NA Intergenic MamRep605|LTR?|LTR? 390528 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 297.166 chr1 179716581 179716803 + 1.33333 NA Intergenic L1M3|LINE|L1 -11084 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 225.166 chr5 123384230 123384446 + 1.33333 NA intron (NM_153223, intron 12 of 20) intron (NM_153223, intron 12 of 20) 39254 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 244.333-24 chr4 74451409 74451733 + 1.33333 NA intron (NM_001657, intron 4 of 5) intron (NM_001657, intron 4 of 5) 6435 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 167.833-22 chr18 62635145 62635328 + 1.33333 NA Intergenic Intergenic -80305 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 224.333-28 chr5 44174782 44174996 + 1.33333 NA Intergenic L1PA13|LINE|L1 -213843 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 270.333-15 chr9 131143387 131143756 + 1.33333 NA intron (NM_001318324, intron 11 of 35) intron (NM_001318324, intron 11 of 35) 17985 NM_005085 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 211.666 chr1 238986550 238986797 + 1.33333 NA Intergenic Intergenic -399895 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 371.999 chr2 78068331 78068754 + 1.33333 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -20188 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 298.333-16 chr7 93030708 93031154 + 1.33333 NA Intergenic L1PREC2|LINE|L1 87048 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 232.5-28 chr6 56652770 56653109 + 1.33333 NA intron (NM_001144770, intron 7 of 94) intron (NM_001144770, intron 7 of 94) -10050 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 405.666-4 chr8 11246807 11247291 + 1.33333 NA Intergenic Intergenic -37767 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 212.333-24 chr5 86547890 86548286 + 1.33333 NA Intergenic Intergenic -69853 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 258-22 chr21 16233785 16234326 + 1.33333 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 39676 NR_136543 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 173.833-12 chr11 112156230 112156410 + 1.33333 NA intron (NM_001243211, intron 1 of 4) AluYk11|SINE|Alu 7774 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 207.166-3 chr17 57870473 57870868 + 1.33333 NA intron (NM_001271875, intron 6 of 10) intron (NM_001271875, intron 6 of 10) -20626 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 258.333-17 chr6 104182838 104183166 + 1.33333 NA Intergenic Intergenic 676544 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 300.5-16 chr3 87877602 87877987 + 1.33333 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) 85088 NM_001322209 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 270.833-3 chr1 157877704 157878286 + 1.33333 NA Intergenic Intergenic -36187 NM_005894 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 224-24 chr2 96194440 96194633 + 1.33333 NA intron (NM_020151, intron 3 of 7) L1MC4|LINE|L1 -13880 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 266.833-8 chr2 62865089 62865440 + 1.33333 NA intron (NM_001142615, intron 9 of 22) Tigger16b|DNA|TcMar-Tigger 158367 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 216-8 chr11 102780982 102781319 + 1.33333 NA promoter-TSS (NM_002425) promoter-TSS (NM_002425) -522 NM_002425 4319 Hs.2258 NM_002425 ENSG00000166670 MMP10 SL-2|STMY2 matrix metallopeptidase 10 protein-coding 431.666-4 chr7 105585462 105585984 + 1.33333 NA Intergenic L1ME3D|LINE|L1 -4181 NM_001355531 100130771 Hs.719432 NM_001355526 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 protein-coding 235.833-24 chrX 70133210 70133637 + 1.33333 NA promoter-TSS (NM_001551) promoter-TSS (NM_001551) -24 NM_001551 3476 Hs.496267 NM_001551 ENSG00000089289 IGBP1 ALPHA-4|IBP1 immunoglobulin binding protein 1 protein-coding 171.667-26 chr2 60874531 60874844 + 1.33333 NA intron (NR_033980, intron 1 of 2) AluJr|SINE|Alu 6627 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 265.999-6 chr6 48566032 48566258 + 1.33333 NA Intergenic Intergenic -497456 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 202-11 chr14 62488479 62488885 + 1.33333 NA Intergenic Intergenic -348709 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 296-20 chrX 47064523 47064815 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -13686 NM_001282848 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 202.667-37 chr7 1611698 1612064 + 1.33333 NA Intergenic Intergenic -2589 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 254-3 chr1 157042638 157043111 + 1.33333 NA intron (NM_014784, intron 1 of 39) intron (NM_014784, intron 1 of 39) 2868 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 227-6 chr10 101319725 101320253 + 1.33333 NA Intergenic Intergenic -34044 NM_001256856 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 207.833-27 chr7 12342146 12342349 + 1.33333 NA intron (NM_001135924, intron 22 of 28) intron (NM_001135924, intron 22 of 28) 61618 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 318.666-8 chr8 142984203 142984498 + 1.33333 NA intron (NR_026913, intron 1 of 1) LTR83|LTR|ERVL -11478 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 224.333-24 chr20 32355772 32355983 + 1.33333 NA Intergenic MLT1E2|LTR|ERVL-MaLR -2467 NM_015338 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 163.666-2 chr14 27990023 27990204 + 1.33333 NA Intergenic Intergenic -316892 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 170.5-7 chr10 32451106 32451352 + 1.33333 NA intron (NR_109827, intron 1 of 8) MIRb|SINE|MIR 5089 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 262.333-17 chr3 96922035 96922231 + 1.33333 NA intron (NM_001080448, intron 2 of 17) L1MC5a|LINE|L1 107539 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 295.666-4 chr10 126021829 126022180 + 1.33333 NA intron (NM_003474, intron 21 of 22) intron (NM_003474, intron 21 of 22) -48731 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 280.166-6 chr8 133092609 133092970 + 1.33333 NA intron (NM_001045556, intron 1 of 8) intron (NM_001045556, intron 1 of 8) 9813 NM_001282964 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 382.332 chr10 107757777 107758245 + 1.33333 NA Intergenic L1ME3|LINE|L1 311282 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 293.999-2 chr15 80117705 80117954 + 1.33333 NA intron (NM_001242917, intron 2 of 6) Charlie1a|DNA|hAT-Charlie 19413 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 275.666-3 chr2 130392165 130392397 + 1.33333 NA Intergenic Intergenic 36225 NM_014369 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase non-receptor type 18 protein-coding 169-5 chr1 207284585 207284892 + 1.33333 NA Intergenic Intergenic -36940 NM_001300903 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 189.167-31 chr5 119825021 119825296 + 1.33333 NA Intergenic Intergenic 195599 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 190-20 chr14 56423299 56423586 + 1.33333 NA Intergenic Charlie23a|DNA|hAT-Charlie -90889 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 351.667-4 chr12 6891033 6891413 + 1.33333 NA Intergenic CpG -1865 NR_135083 105369632 Hs.670096 NR_135083 ENSG00000111671 LOC105369632 - uncharacterized LOC105369632 ncRNA 190.5-30 chr3 51759265 51759545 + 1.33333 NA Intergenic L1M4|LINE|L1 19832 NM_001368368 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 234.666-11 chrX 145178527 145178714 + 1.33333 NA Intergenic Intergenic -68883 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 410.166-3 chr6 64706976 64707506 + 1.33333 NA intron (NM_001292009, intron 22 of 43) L1PB1|LINE|L1 -594177 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 334.666-8 chr4 99807521 99807912 + 1.33333 NA Intergenic Intergenic -9111 NM_001306151 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 267.5 chr1 118046222 118046497 + 1.33333 NA intron (NM_206996, intron 20 of 48) L1MEd|LINE|L1 116620 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 263.5-9 chr15 78284536 78284885 + 1.33333 NA intron (NM_001303248, intron 8 of 8) intron (NM_001303248, intron 8 of 8) 14899 NM_025234 80349 Hs.513055 NM_025234 ENSG00000140395 WDR61 REC14|SKI8 WD repeat domain 61 protein-coding 261.166 chr10 52594734 52594970 + 1.33333 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -124319 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 355-11 chr4 52551046 52551491 + 1.33333 NA Intergenic Intergenic 105271 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 375.999-4 chr3 145313103 145313551 + 1.33333 NA Intergenic Intergenic 755858 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 269.167-6 chr17 55074844 55075290 + 1.33333 NA intron (NM_178509, intron 13 of 17) intron (NM_178509, intron 13 of 17) -106282 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 234.333-8 chr12 59501863 59502262 + 1.33333 NA Intergenic Intergenic -93967 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 201-36 chr5 140838207 140838639 + 1.33333 NA intron (NM_018910, intron 1 of 3) AluSx1|SINE|Alu -2764 NM_018911 56140 Hs.199343 NM_018911 ENSG00000204962 PCDHA8 PCDH-ALPHA8 protocadherin alpha 8 protein-coding 207.666-4 chr2 72737522 72737826 + 1.33333 NA intron (NM_001321734, intron 1 of 21) AluSx|SINE|Alu 88359 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 226.667-27 chr3 172280676 172280976 + 1.33333 NA intron (NM_001135095, intron 6 of 25) intron (NM_001135095, intron 6 of 25) 167630 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 236.833-10 chr16 22614814 22615103 + 1.33333 NA Intergenic LTR53-int|LTR|ERVL 69260 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 329.333-6 chr15 60155677 60156135 + 1.33333 NA Intergenic Intergenic 151595 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 218-17 chr18 33106441 33106635 + 1.33333 NA intron (NM_001308126, intron 20 of 23) intron (NM_001308126, intron 20 of 23) -333515 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 288-17 chr2 230902080 230902341 + 1.33333 NA intron (NR_038238, intron 3 of 3) MamGypLTR3a|LTR|Gypsy 15664 NR_038238 151484 Hs.559309 NR_038238 ENSG00000232520 LOC151484 - uncharacterized LOC151484 ncRNA 358.333-8 chr7 19121498 19121918 + 1.33333 NA Intergenic Intergenic -4072 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 248.666-9 chr8 124199535 124199764 + 1.33333 NA intron (NR_125420, intron 2 of 2) intron (NR_125420, intron 2 of 2) -28127 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 182-47 chr8 77619430 77619590 + 1.33333 NA Intergenic Intergenic 168813 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 290.667-6 chr14 59537823 59538238 + 1.33333 NA exon (NM_001164399, exon 13 of 20) exon (NM_001164399, exon 13 of 20) 38782 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 271.333-22 chr5 42510536 42510781 + 1.33333 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) -37385 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 362.833-7 chr4 155376528 155376927 + 1.33333 NA intron (NM_001039580, intron 1 of 13) CpG 238 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 200-42 chr8 49625977 49626175 + 1.33333 NA Intergenic Intergenic -113896 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 327.334-4 chr19 51783352 51783814 + 1.33333 NA Intergenic L2b|LINE|L2 -11574 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 221.333-8 chr17 71051334 71051515 + 1.33333 NA Intergenic Intergenic 150755 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 258.666-5 chr14 23265296 23265500 + 1.33333 NA intron (NM_001370218, intron 12 of 15) intron (NM_001370218, intron 12 of 15) 20734 NM_020834 57594 Hs.632332 NM_020834 ENSG00000215271 HOMEZ KIAA1443 homeobox and leucine zipper encoding protein-coding 239-14 chr17 56679584 56679929 + 1.33333 NA Intergenic Intergenic 86057 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 310.833-5 chr17 43940489 43940875 + 1.33333 NA TTS (NM_002722) TTS (NM_002722) 1592 NM_001319209 5539 Hs.558368 NM_002722 ENSG00000108849 PPY PNP|PP pancreatic polypeptide protein-coding 200.333-19 chr19 8070136 8070286 + 1.33333 NA intron (NM_032447, intron 63 of 63) L2a|LINE|L2 17449 NM_001201359 6370 Hs.310511 NM_005624 ENSG00000131142 CCL25 Ckb15|SCYA25|TECK C-C motif chemokine ligand 25 protein-coding 406.666-3 chr21 23638068 23638528 + 1.33333 NA Intergenic Intergenic -253463 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 286.667-25 chrX 78221019 78221374 + 1.33333 NA Intergenic L1M4c|LINE|L1 -81546 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 324-12 chr3 112585513 112585857 + 1.33333 NA TTS (NM_001348905) TTS (NM_001348905) 16284 NR_109779 100506621 Hs.86538 NR_109779 LINC01279 - long intergenic non-protein coding RNA 1279 ncRNA 201.667-32 chr22 27794066 27794326 + 1.33333 NA intron (NM_002430, intron 1 of 1) intron (NM_002430, intron 1 of 1) 7560 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 318.167-7 chr18 45783077 45783535 + 1.33333 NA Intergenic Intergenic -42369 NM_213602 284266 Hs.287692 NM_213602 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig like lectin 15 protein-coding 193.833-22 chr4 137165129 137165414 + 1.33333 NA intron (NR_149105, intron 1 of 3) L2b|LINE|L2 -28485 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 347.834-6 chr4 46806363 46806831 + 1.33333 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 102648 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 260-31 chr9 131008781 131009234 + 1.33333 NA promoter-TSS (NM_006059) promoter-TSS (NM_006059) -167 NM_006059 10319 Hs.201805 NM_006059 ENSG00000050555 LAMC3 OCCM laminin subunit gamma 3 protein-coding 367.666-6 chr4 77212272 77212663 + 1.33333 NA Intergenic Intergenic 55260 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 169.667-28 chr17 75237175 75237573 + 1.33333 NA 3' UTR (NM_014001, exon 16 of 16) 3' UTR (NM_014001, exon 16 of 16) 24232 NM_001291642 23163 Hs.87726 NM_014001 ENSG00000125447 GGA3 - golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding 222-5 chr1 198784630 198784877 + 1.33333 NA Intergenic Intergenic 74229 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 177.166 chr11 33702117 33702290 + 1.33333 NA TTS (NM_203330) TTS (NM_203330) -1463 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 209.833-2 chr1 113363943 113364138 + 1.33333 NA Intergenic L2a|LINE|L2 -26475 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 169-17 chr15 57920777 57920936 + 1.33333 NA Intergenic L2b|LINE|L2 93167 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 222.666-4 chr16 51994635 51994863 + 1.33333 NA Intergenic Intergenic 79186 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 404.666-2 chr13 91946432 91946967 + 1.33333 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 405508 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 173.333-3 chr1 94336159 94336353 + 1.33333 NA Intergenic Intergenic -82121 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 189.333-32 chr5 123197358 123197616 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -107171 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 228.833-9 chr17 63739805 63740115 + 1.33333 NA intron (NR_156741, intron 1 of 11) intron (NR_156741, intron 1 of 11) 1839 NM_001003787 92335 Hs.514402 NM_153335 ENSG00000266173 STRADA LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk STE20 related adaptor alpha protein-coding 187.667-41 chr7 154744389 154745003 + 1.33333 NA intron (NR_157196, intron 8 of 25) intron (NR_157196, intron 8 of 25) -183821 NR_024477 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 337.666-3 chr18 70932450 70932825 + 1.33333 NA Intergenic Intergenic -281683 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 248-44 chrUn_KI270442v1 92327 93022 + 1.33333 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 202.833-11 chr18 66558330 66558577 + 1.33333 NA intron (NM_001271028, intron 3 of 9) intron (NM_001271028, intron 3 of 9) 45637 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 172.667-33 chr2 173650928 173651157 + 1.33333 NA Intergenic Intergenic 296170 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 260.833-13 chr4 180028923 180029119 + 1.33333 NA Intergenic Intergenic 1130128 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 244.333-3 chr1 103439053 103439473 + 1.33333 NA intron (NM_001347930, intron 1 of 4) intron (NM_001347930, intron 1 of 4) 86248 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 207.333-10 chr12 26560496 26560680 + 1.33333 NA intron (NM_002223, intron 35 of 56) intron (NM_002223, intron 35 of 56) 272606 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 259.666-9 chr9 34594168 34594398 + 1.33333 NA Intergenic Intergenic -4143 NM_001207011 1271 Hs.129966 NM_001842 ENSG00000122756 CNTFR - ciliary neurotrophic factor receptor protein-coding 181-38 chr7 32198119 32198504 + 1.33333 NA intron (NM_001322059, intron 2 of 17) L1MEd|LINE|L1 101017 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 249.5-2 chr10 51971456 51971708 + 1.33333 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -271987 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 186.5-11 chr17 57448974 57449191 + 1.33333 NA intron (NM_001322250, intron 6 of 13) MIRc|SINE|MIR 74515 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 311.833-3 chr2 121185542 121186034 + 1.33333 NA Intergenic Intergenic 99414 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 355.166 chr11 33362412 33362740 + 1.33333 NA Intergenic Intergenic -13532 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 299.166-3 chr19 8412771 8413012 + 1.33333 NA promoter-TSS (NM_001369778) promoter-TSS (NM_001369778) -412 NM_001005415 51257 Hs.631861 NM_016496 ENSG00000099785 MARCH2 HSPC240|MARCH-II|RNF172 membrane associated ring-CH-type finger 2 protein-coding 181.333-38 chr7 43194252 43194511 + 1.33333 NA intron (NM_015052, intron 2 of 29) intron (NM_015052, intron 2 of 29) 43486 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 198.667-2 chr1 194992520 194992773 + 1.33333 NA Intergenic Intergenic 1096069 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 258.666-9 chr2 73063291 73063569 + 1.33333 NA intron (NM_001330402, intron 1 of 12) LTR65|LTR|ERV1 -4258 NM_001330406 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 403.999 chr2 199437833 199438353 + 1.33333 NA intron (NM_001172509, intron 2 of 10) MER33|DNA|hAT-Charlie 19846 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 285.666-13 chr7 107137757 107138091 + 1.33333 NA intron (NM_002736, intron 4 of 10) HAL1|LINE|L1 -31037 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 218.333-14 chr2 34967257 34967452 + 1.33333 NA Intergenic L1ME1|LINE|L1 289797 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 228-38 chr7 87897513 87897757 + 1.33333 NA intron (NM_001318062, intron 8 of 11) intron (NM_001318062, intron 8 of 11) 21142 NM_001318060 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 255.833-8 chr14 65670331 65670677 + 1.33333 NA intron (NR_038167, intron 7 of 8) L2a|LINE|L2 199402 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 197.666 chr1 85301744 85301956 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -25218 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 214-3 chr1 178914983 178915224 + 1.33333 NA intron (NM_152663, intron 19 of 19) intron (NM_152663, intron 19 of 19) -44026 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 182.5-41 chr9 22466070 22466206 + 1.33333 NA Intergenic L2a|LINE|L2 19314 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 252-12 chr11 14790837 14791127 + 1.33333 NA intron (NM_000922, intron 4 of 15) MER3|DNA|hAT-Charlie 101223 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 302.666-6 chr4 46098614 46098933 + 1.33333 NA intron (NM_173536, intron 1 of 8) intron (NM_173536, intron 1 of 8) 25281 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 165.333-19 chr14 55162772 55163006 + 1.33333 NA intron (NM_001146015, intron 13 of 19) intron (NM_001146015, intron 13 of 19) 25906 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 208.833-5 chr10 128667458 128667801 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -245204 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 236.666-9 chr8 81384472 81384689 + 1.33333 NA Intergenic L1MA4A|LINE|L1 62859 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 336.667 chr1 111449144 111449493 + 1.33333 NA promoter-TSS (NM_001317062) promoter-TSS (NM_001317062) -10 NM_001317062 79084 Hs.204773 NM_024102 ENSG00000116455 WDR77 HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50 WD repeat domain 77 protein-coding 346-6 chr22 28018568 28019031 + 1.33333 NA intron (NM_001145418, intron 13 of 22) intron (NM_001145418, intron 13 of 22) -98187 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 305.999 chr13 104984351 104984650 + 1.33333 NA Intergenic Intergenic -481367 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 302.666-2 chr10 101839509 101840024 + 1.33333 NA exon (NM_173194, exon 1 of 8) exon (NM_173194, exon 1 of 8) 105 NM_173194 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 244.666-12 chr8 81859019 81859255 + 1.33333 NA Intergenic LTR88b|LTR|Gypsy? -16851 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 242.333-29 chrX 110408395 110408746 + 1.33333 NA intron (NM_001171689, intron 2 of 7) MER20B|DNA|hAT-Charlie -10487 NM_020769 57529 Hs.201071 NM_020769 ENSG00000243978 RTL9 MAR9|MART9|RGAG1|SIRH10 retrotransposon Gag like 9 protein-coding 255.666-4 chr2 174767400 174767838 + 1.33333 NA Intergenic Intergenic -3147 NM_000079 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 194.833-7 chr14 45249030 45249225 + 1.33333 NA intron (NM_018353, intron 1 of 16) AluSx|SINE|Alu 4075 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 251.833-13 chr6 67975911 67976503 + 1.33333 NA Intergenic Intergenic -79144 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 164.667-33 chr21 28406149 28406352 + 1.33333 NA Intergenic AluY|SINE|Alu -133068 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 270.833-11 chr3 173103690 173104166 + 1.33333 NA intron (NM_031955, intron 2 of 10) MSTA-int|LTR|ERVL-MaLR 37307 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 214.167-28 chr6 126537811 126538062 + 1.33333 NA Intergenic Intergenic 53305 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 207.666-3 chr2 72193798 72194006 + 1.33333 NA intron (NR_135773, intron 19 of 21) MER58A|DNA|hAT-Charlie -46040 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 553.167 chr17 74457502 74458510 + 1.33333 NA Intergenic (ATTC)n|Simple_repeat|Simple_repeat -8367 NM_001330456 11314 Hs.9688 NM_007261 ENSG00000167851 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 278.666-11 chr6 166988472 166988877 + 1.33333 NA Intergenic LTR19C|LTR|ERV1 9238 NR_037504 100500857 NR_037504 ENSG00000265828 MIR3939 mir-3939 microRNA 3939 ncRNA 177.5-19 chr14 24297636 24297839 + 1.33333 NA intron (NM_138452, intron 2 of 8).2 L2b|LINE|L2 1723 NM_138452 115817 Hs.348350 NM_138452 ENSG00000157379 DHRS1 SDR19C1 dehydrogenase/reductase 1 protein-coding 237.666 chr1 66243785 66244002 + 1.33333 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -88215 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 294-22 chr9 75373023 75373473 + 1.33333 NA Intergenic Intergenic 284734 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 246.666 chr1 25678178 25678452 + 1.33333 NA intron (NM_020379, intron 1 of 11) MIRc|SINE|MIR 60847 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 270.5-32 chr5 67816420 67816875 + 1.33333 NA Intergenic Intergenic 23434 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 299.666 chr1 113074233 113074527 + 1.33333 NA intron (NM_014813, intron 1 of 17) intron (NM_014813, intron 1 of 17) 1182 NM_014813 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 165.5-21 chr18 49646100 49646380 + 1.33333 NA Intergenic Intergenic 84183 NM_006033 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 166-31 chr16 24236458 24236652 + 1.33333 NA intron (NR_146569, intron 1 of 3) intron (NR_146569, intron 1 of 3) 451 NR_146569 105371142 Hs.128031 NR_146569 ENSG00000260264 LINC2194 - long intergenic non-protein coding RNA 2194 ncRNA 415.333-6 chr4 84994727 84995314 + 1.33333 NA intron (NR_152782, intron 2 of 3) intron (NR_152782, intron 2 of 3) 27536 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 357 chr10 22379671 22380104 + 1.33333 NA intron (NM_172242, intron 4 of 9) AluJo|SINE|Alu 34391 NM_001253854 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 275.166-3 chr8 88103668 88104078 + 1.33333 NA intron (NM_005941, intron 6 of 9) intron (NM_005941, intron 6 of 9) 223610 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 252.666-5 chr17 70768011 70768314 + 1.33333 NA Intergenic Intergenic 434017 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 184.166-5 chr8 77538557 77538808 + 1.33333 NA Intergenic Intergenic 87985 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 268.666-4 chr4 133842067 133842458 + 1.33333 NA Intergenic Intergenic 359527 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 193.666-8 chr5 45266437 45266696 + 1.33333 NA intron (NM_021072, intron 7 of 7) intron (NM_021072, intron 7 of 7) 429814 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 184.5-41 chr4 84711144 84711368 + 1.33333 NA intron (NM_014991, intron 51 of 67) intron (NM_014991, intron 51 of 67) 128129 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 178.333-35 chr6 161172002 161172167 + 1.33333 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) -10102 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 281.333-10 chr12 65312850 65313154 + 1.33333 NA intron (NM_001031679, intron 2 of 6) intron (NM_001031679, intron 2 of 6) 34015 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 501.999-2 chr8 140082264 140082800 + 1.33333 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 18003 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 541.333-3 chrUn_GL000216v2 73 855 + 1.33333 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 219-30 chr7 12976100 12976360 + 1.33333 NA Intergenic L1MA8|LINE|L1 288597 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 243.833 chr1 41988652 41989355 + 1.33333 NA intron (NR_038261, intron 1 of 3) L1MA8|LINE|L1 46931 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 247.5-31 chr21 30733369 30733653 + 1.33333 NA Intergenic L1M6|LINE|L1 13748 NM_181617 337978 Hs.553699 NM_181617 ENSG00000187026 KRTAP21-2 KAP21.2 keratin associated protein 21-2 protein-coding 283.833-2 chr14 27198827 27199071 + 1.33333 NA Intergenic Intergenic 290307 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 297-3 chr11 10924414 10924834 + 1.33333 NA Intergenic AluSx|SINE|Alu 66407 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 737.666-3 chr17 78861331 78862814 + 1.33333 NA intron (NM_003255, intron 3 of 4) intron (NM_003255, intron 3 of 4) -21545 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 310.999-3 chr21 27710477 27710739 + 1.33333 NA Intergenic L1M1|LINE|L1 -11771 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 279.166-5 chr6 54345707 54345957 + 1.33333 NA intron (NM_014464, intron 5 of 10) intron (NM_014464, intron 5 of 10) 37391 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 183.333-25 chr14 89853733 89853902 + 1.33333 NA intron (NM_001284269, intron 5 of 5) intron (NM_001284269, intron 5 of 5) 100719 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 372.499 chr3 42881215 42881602 + 1.33333 NA Intergenic Intergenic -5529 NM_004391 1582 Hs.447793 NM_004391 ENSG00000180432 CYP8B1 CP8B|CYP12 cytochrome P450 family 8 subfamily B member 1 protein-coding 369.499 chr14 19838695 19839182 + 1.33333 NA Intergenic AluJb|SINE|Alu 30235 NM_001348266 283617 NM_001348266 ENSG00000176290 OR4K3 OR14-10|OR4K3P olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding 457.166 chr1 113175546 113176063 + 1.33333 NA Intergenic AluSx1|SINE|Alu 30449 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 275.166-2 chr11 120300184 120300393 + 1.33333 NA intron (NM_001244682, intron 5 of 12) MIR|SINE|MIR -25011 NM_001198675 219902 Hs.643516 NM_174926 ENSG00000181264 TLCD5 TMEM136 TLC domain containing 5 protein-coding 339.333-6 chr17 47248353 47248741 + 1.33333 NA Intergenic L1MEf|LINE|L1 -5295 NM_000212 3690 Hs.218040 NM_000212 ENSG00000259207 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin subunit beta 3 protein-coding 386.833-3 chr2 47273768 47274287 + 1.33333 NA intron (NR_110207, intron 1 of 2) L2a|LINE|L2 -61288 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 361.666-3 chr19 44800231 44800647 + 1.33333 NA exon (NM_001130852, exon 9 of 10) exon (NM_001130852, exon 9 of 10) -8620 NM_001013257 4059 Hs.625725 NM_005581 ENSG00000187244 BCAM AU|CD239|LU|MSK19 basal cell adhesion molecule (Lutheran blood group) protein-coding 211.334-4 chr18 3129081 3129401 + 1.33333 NA exon (NM_003803, exon 18 of 38) exon (NM_003803, exon 18 of 38) 90727 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 322.667-24 chr7 44822165 44822610 + 1.33333 NA Intergenic AluSz|SINE|Alu 25706 NM_001300981 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 310.833-3 chr12 2890268 2890895 + 1.33333 NA promoter-TSS (NM_001160408) promoter-TSS (NM_001160408) -310 NM_001160408 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 TUB like protein 3 protein-coding 254.666-3 chr11 100596255 100596559 + 1.33333 NA Intergenic L2c|LINE|L2 -90881 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 360.166 chr11 78586437 78586894 + 1.33333 NA Intergenic Intergenic -11801 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 250.833-5 chr12 8125117 8125316 + 1.33333 NA intron (NM_194448, intron 1 of 3) L1ME4a|LINE|L1 1584 NM_016184 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 294.5-20 chr5 11720099 11720452 + 1.33333 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -131209 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 321.999-2 chr13 109776275 109776590 + 1.33333 NA intron (NM_003749, intron 1 of 1) intron (NM_003749, intron 1 of 1) 10151 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 166.5-30 chr4 74445593 74445802 + 1.33333 NA intron (NM_001657, intron 1 of 5) MIR3|SINE|MIR 561 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 358-6 chr2 74626459 74626942 + 1.33333 NA intron (NM_001321739, intron 2 of 10) L1ME4b|LINE|L1 21337 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 198-30 chr3 74007044 74007254 + 1.33333 NA Intergenic Intergenic 197905 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 280.333-19 chr3 173933657 173933924 + 1.33333 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -12994 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 293.666-3 chr13 74850463 74850758 + 1.33333 NA Intergenic Intergenic 297767 NR_034025 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 200.833-13 chr15 66802796 66803070 + 1.33333 NA Intergenic Intergenic 100697 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 254.666-9 chr6 121222811 121223298 + 1.33333 NA intron (NR_104452, intron 22 of 35) intron (NR_104452, intron 22 of 35) 111426 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 292.333-16 chr22 39836207 39836605 + 1.33333 NA intron (NM_152512, intron 3 of 6) intron (NM_152512, intron 3 of 6) 57354 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 490.666-2 chr12 70898911 70899591 + 1.33333 NA intron (NM_002849, intron 1 of 13) L1MA7|LINE|L1 21487 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 200.667-49 chr7 3064221 3064475 + 1.33333 NA Intergenic LTR16C|LTR|ERVL -20481 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 168.5-29 chr20 25101540 25101824 + 1.33333 NA Intergenic Intergenic -19303 NM_199425 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 283.333-12 chr21 25499737 25500013 + 1.33333 NA Intergenic Intergenic -62270 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene ncRNA 237.166-8 chr6 152901485 152901760 + 1.33333 NA Intergenic Intergenic 81419 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 193.166-4 chr9 37902859 37903090 + 1.33333 NA intron (NR_024873, intron 1 of 3) intron (NR_024873, intron 1 of 3) 1153 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 267.333-4 chr11 104312358 104312630 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -148347 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 275.667-2 chr1 172263053 172263391 + 1.33333 NA intron (NR_146559, intron 16 of 20) intron (NR_146559, intron 16 of 20) -118387 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 258.499 chr7 26242085 26242278 + 1.33333 NA Intergenic AluSz6|SINE|Alu 40436 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 176.5-6 chr12 65627285 65627485 + 1.33333 NA intron (NR_120432, intron 1 of 4) MLT1F|LTR|ERVL-MaLR 14987 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 232.667-32 chr6 5170704 5171590 + 1.33333 NA intron (NM_001164841, intron 2 of 3) intron (NM_001164841, intron 2 of 3) -22825 NR_037462 100500900 NR_037462 ENSG00000265083 MIR3691 mir-3691 microRNA 3691 ncRNA 237.5-11 chr14 32940555 32940865 + 1.33333 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 1831 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 251.333-17 chr20 49086926 49087192 + 1.33333 NA intron (NM_001362762, intron 16 of 24) intron (NM_001362762, intron 16 of 24) 40747 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 392.167-2 chr5 153425893 153426510 + 1.33333 NA Intergenic Intergenic -64323 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 313.5-14 chr2 637126 637546 + 1.33333 NA Intergenic Intergenic 39368 NM_001352681 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 267.333-29 chrX 22158906 22159277 + 1.33333 NA intron (NM_001282754, intron 12 of 20) intron (NM_001282754, intron 12 of 20) 13892 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 340.167-10 chr8 118099349 118100237 + 1.33333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 12026 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 247.666-3 chr12 63880561 63880849 + 1.33333 NA intron (NM_001346201, intron 1 of 21) L2c|LINE|L2 36005 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 194-8 chr10 33054715 33054981 + 1.33333 NA Intergenic Intergenic 61959 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 318-14 chr4 156447410 156447796 + 1.33333 NA Intergenic L1ME3G|LINE|L1 -493737 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 205.667-4 chr10 45604060 45604487 + 1.33333 NA Intergenic L1MC3|LINE|L1 -9367 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 344-18 chr8 9307418 9307942 + 1.33333 NA Intergenic Intergenic -17371 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 242.166-4 chr20 47781704 47781971 + 1.33333 NA intron (NM_198596, intron 1 of 20) intron (NM_198596, intron 1 of 20) 4227 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 335.499-2 chr7 36369004 36369454 + 1.33333 NA intron (NM_001100425, intron 2 of 6) intron (NM_001100425, intron 2 of 6) -1989 NM_015314 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 269-7 chr12 9745921 9746252 + 1.33333 NA Intergenic L1MEg|LINE|L1 -12787 NM_001253750 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 166.667-23 chr18 63336517 63336827 + 1.33333 NA intron (NM_002035, intron 8 of 9) Charlie1a|DNA|hAT-Charlie -17292 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 223.333-20 chr2 10787510 10787746 + 1.33333 NA intron (NM_001282704, intron 12 of 14) intron (NM_001282704, intron 12 of 14) 25157 NM_005742 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 250.666 chr1 181142929 181143131 + 1.33333 NA Intergenic MIRb|SINE|MIR -31454 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 274.167-14 chr6 55544915 55545442 + 1.33333 NA intron (NR_109867, intron 1 of 3) intron (NR_109867, intron 1 of 3) 34036 NM_001287746 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 274.666-8 chr7 11168986 11169359 + 1.33333 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 195300 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 244-9 chr18 77059137 77059431 + 1.33333 NA intron (NM_001025100, intron 3 of 3) L1ME4c|LINE|L1 -42229 NM_002385 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 371.166-2 chr4 55469787 55470230 + 1.33333 NA intron (NM_004898, intron 8 of 22) Tigger3b|DNA|TcMar-Tigger 74051 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 344.166-2 chr2 237085372 237085764 + 1.33333 NA promoter-TSS (NM_006710) promoter-TSS (NM_006710) 127 NM_198189 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 327.833-11 chr5 45006829 45007216 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger 198075 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 250-16 chr2 220056071 220056293 + 1.33333 NA Intergenic Intergenic -149617 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 235.666-3 chr2 134644973 134645149 + 1.33333 NA intron (NM_030923, intron 2 of 7) L1ME1|LINE|L1 73939 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 313.333-15 chr5 41892067 41892459 + 1.33333 NA Intergenic L1MB7|LINE|L1 -12081 NM_175921 285636 Hs.29899 NM_175921 ENSG00000205765 C5orf51 - chromosome 5 open reading frame 51 protein-coding 456.167-4 chr5 154131075 154131735 + 1.33333 NA Intergenic MER81|DNA|hAT-Blackjack -59328 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 243.166-10 chrX 79411261 79411542 + 1.33333 NA Intergenic Intergenic -43849 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 172-28 chr20 24886242 24886395 + 1.33333 NA Intergenic L1MB3|LINE|L1 -62951 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 266-19 chr4 168291001 168291415 + 1.33333 NA intron (NM_017631, intron 8 of 37) L1ME4c|LINE|L1 27544 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 261.999 chr4 82016873 82017100 + 1.33333 NA Intergenic Intergenic 357005 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 206-6 chr11 88680998 88681244 + 1.33333 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 176545 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 399.5-6 chr2 64587787 64588270 + 1.33333 NA intron (NM_001002243, intron 8 of 8) L1MB7|LINE|L1 -19284 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 292.999 chr13 51896199 51896434 + 1.33333 NA Intergenic Intergenic 34347 NM_001346075 83446 Hs.120573 NM_031290 ENSG00000123171 CCDC70 - coiled-coil domain containing 70 protein-coding 511.5-7 chr7 81563599 81564223 + 1.33333 NA Intergenic L1ME3F|LINE|L1 -2092 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 316.166-3 chr16 28846409 28846823 + 1.33333 NA promoter-TSS (NM_003321) promoter-TSS (NM_003321) 16 NM_001308293 25970 Hs.15744 NM_015503 ENSG00000178188 SH2B1 PSM|SH2B SH2B adaptor protein 1 protein-coding 348.333 chr1 96344849 96345340 + 1.33333 NA intron (NR_110693, intron 3 of 5) L1PA8|LINE|L1 29031 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 180.166 chr5 118152562 118152753 + 1.33333 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -129917 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 265.666 chr1 85785473 85785774 + 1.33333 NA intron (NM_152890, intron 48 of 59) intron (NM_152890, intron 48 of 59) -77190 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 208.666-4 chr11 65430676 65430906 + 1.33333 NA non-coding (NR_131012, exon 1 of 1) non-coding (NR_131012, exon 1 of 1) 7993 NR_028272 283131 Hs.523789 NR_002802 ENSG00000245532 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 ncRNA 297.166-2 chr12 40565845 40566141 + 1.33333 NA intron (NM_173600, intron 169 of 173) intron (NM_173600, intron 169 of 173) -126446 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 463-2 chr11 80469684 80470154 + 1.33333 NA Intergenic L1MEc|LINE|L1 292884 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 317-10 chr4 140330107 140330561 + 1.33333 NA intron (NR_033939, intron 2 of 4) L1PB1|LINE|L1 -13109 NM_001153446 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 285.666-12 chr6 76204933 76205181 + 1.33333 NA Intergenic Intergenic -132379 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 187-2 chr1 30715401 30715586 + 1.33333 NA intron (NM_002379, intron 5 of 7) MIRb|SINE|MIR -3279 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 292-2 chr1 208903433 208903781 + 1.33333 NA Intergenic Intergenic -68847 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 192.167-37 chr8 52625503 52625791 + 1.33333 NA intron (NM_001083617, intron 22 of 23) MER47A|DNA|TcMar-Tigger -60217 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 211.5-4 chr1 171434988 171435215 + 1.33333 NA Intergenic Intergenic -50429 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 176-19 chr2 34621227 34621445 + 1.33333 NA Intergenic LTR40a|LTR|ERVL -56221 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 323.999 chr1 35717741 35718036 + 1.33333 NA promoter-TSS (NM_001348691) promoter-TSS (NM_001348691) -977 NM_001348691 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 194.666-10 chr8 104035340 104035501 + 1.33333 NA intron (NR_145710, intron 24 of 29) intron (NR_145710, intron 24 of 29) -187915 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 256.667-9 chr13 57284027 57284280 + 1.33333 NA Intergenic Intergenic 116956 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 262.166-6 chr2 140148752 140149002 + 1.33333 NA Intergenic L1MC5a|LINE|L1 437808 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 334.5-4 chr10 77315602 77316035 + 1.33333 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 34943 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 330.333-13 chrX 100379571 100379839 + 1.33333 NA intron (NM_020766, intron 2 of 4) intron (NM_020766, intron 2 of 4) 30568 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 200-4 chr1 205284722 205285026 + 1.33333 NA Intergenic Intergenic 27677 NM_001331034 9911 Hs.6360 NM_014858 ENSG00000133069 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 247.333-10 chr2 69893635 69893940 + 1.33333 NA promoter-TSS (NM_006857) promoter-TSS (NM_006857) -169 NR_037862 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 259.833-17 chr7 27170667 27170928 + 1.33333 NA non-coding (NR_037939, exon 2 of 2) non-coding (NR_037939, exon 2 of 2) -1234 NR_029911 442920 NR_029911 ENSG00000283745 MIR196B MIRN196B|miR-196b|miRNA196B microRNA 196b ncRNA 217.334-8 chr3 148836883 148837147 + 1.33333 NA intron (NM_001871, intron 3 of 10) intron (NM_001871, intron 3 of 10) 9204 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 241.499 chr12 7800805 7800990 + 1.33333 NA Intergenic AluJr|SINE|Alu 11495 NM_001297698 79923 Hs.635882 NM_024865 ENSG00000111704 NANOG - Nanog homeobox protein-coding 323-15 chr2 180981928 180982365 + 1.33333 NA exon (NM_182678, exon 3 of 7) exon (NM_182678, exon 3 of 7) 1022 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 296.999-2 chr20 40192307 40192585 + 1.33333 NA Intergenic Intergenic 187985 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 180-32 chr19 45476799 45477030 + 1.33333 NA Intergenic AluSx1|SINE|Alu 8918 NM_001114171 2354 Hs.590958 NM_006732 ENSG00000125740 FOSB AP-1|G0S3|GOS3|GOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding 239.167-33 chr8 129382328 129382544 + 1.33333 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 101706 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 221.333-17 chr3 29598208 29598498 + 1.33333 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 317041 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 180-24 chr16 52769050 52769199 + 1.33333 NA Intergenic Intergenic -162149 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 237.666-6 chr4 32841340 32841646 + 1.33333 NA Intergenic Intergenic 490455 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 174.666-4 chr4 39048141 39048397 + 1.33333 NA intron (NM_001171654, intron 1 of 10) intron (NM_001171654, intron 1 of 10) 3438 NM_001171654 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 354.499 chrX 98216178 98216510 + 1.33333 NA Intergenic Intergenic -651809 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 281.167 chr1 7211232 7211782 + 1.33333 NA intron (NM_001349608, intron 3 of 21) L1ME2z|LINE|L1 178247 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 313.167-7 chr14 22473164 22473563 + 1.33333 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) 9596 NR_148361 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 294.5-19 chr4 53798575 53798968 + 1.33333 NA Intergenic L1ME4a|LINE|L1 102870 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 339-14 chr7 37765838 37766293 + 1.33333 NA Intergenic Intergenic 82299 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 177-15 chr14 66645657 66645825 + 1.33333 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 138334 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 206.667-29 chr2 153386583 153386852 + 1.33333 NA Intergenic Intergenic 92045 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 166.667-3 chr1 213754797 213755000 + 1.33333 NA Intergenic Intergenic -169851 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 364.667-9 chr18 2982207 2982687 + 1.33333 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 29500 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 424-10 chr8 85370724 85371299 + 1.33333 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) 7102 NM_001128830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 383.5-8 chr5 35467712 35468176 + 1.33333 NA Intergenic Intergenic -149919 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 178.666-6 chr5 83980048 83980314 + 1.33333 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -259326 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 271.166-8 chr8 125704694 125705165 + 1.33333 NA Intergenic Intergenic 246268 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 294.333-12 chr4 73372037 73372406 + 1.33333 NA Intergenic Charlie15b|DNA|hAT-Charlie -32066 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 301.5-4 chr1 119140364 119140783 + 1.33333 NA promoter-TSS (NM_201263) promoter-TSS (NM_201263) 99 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 242.333-23 chr5 173587898 173588146 + 1.33333 NA Intergenic L1M4|LINE|L1 8388 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 324.666-3 chr15 81133992 81134282 + 1.33333 NA promoter-TSS (NM_001353365) promoter-TSS (NM_001353365) -133 NM_001353365 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 277.666-9 chr8 100926597 100926935 + 1.33333 NA intron (NM_001135700, intron 2 of 5) intron (NM_001135700, intron 2 of 5) 23805 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 465.668 chr2 200702276 200702904 + 1.33333 NA intron (NR_135011, intron 2 of 31) intron (NR_135011, intron 2 of 31) 6867 NR_135012 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 244.167-24 chr5 171660567 171661091 + 1.33333 NA Intergenic MamGypLTR3a|LTR|Gypsy -125043 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 267.833-12 chr6 136608122 136608758 + 1.33333 NA intron (NM_005923, intron 18 of 29) L2a|LINE|L2 -20674 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 386.333-3 chr16 47433699 47434045 + 1.33333 NA intron (NM_030790, intron 5 of 17) (AT)n|Simple_repeat|Simple_repeat 27191 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 199.333-41 chr5 100267655 100267916 + 1.33333 NA Intergenic Intergenic 120469 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 343.333-10 chr4 59872732 59873183 + 1.33333 NA Intergenic Intergenic 859384 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 232.666-3 chr11 9524921 9525162 + 1.33333 NA intron (NM_001282656, intron 14 of 15) intron (NM_001282656, intron 14 of 15) -48629 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 183-25 chr2 20882344 20882576 + 1.33333 NA Intergenic Intergenic -59330 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 499.5 chr10 116515966 116516525 + 1.33333 NA Intergenic Intergenic -29686 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 352-5 chr13 60437775 60438161 + 1.33333 NA intron (NM_001146070, intron 1 of 13) L2c|LINE|L2 40748 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 180.667-43 chr7 114337602 114337863 + 1.33333 NA intron (NR_033766, intron 2 of 19) intron (NR_033766, intron 2 of 19) -77083 NM_001172766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 236.833-19 chr5 60170130 60170388 + 1.33333 NA intron (NM_001349243, intron 2 of 16) MIRb|SINE|MIR 202404 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 476.5-3 chr19 48835868 48836716 + 1.33333 NA TTS (NM_001161354) TTS (NM_001161354) 199 NM_016246 51171 Hs.18788 NM_016246 ENSG00000087076 HSD17B14 DHRS10|SDR47C1|retSDR3 hydroxysteroid 17-beta dehydrogenase 14 protein-coding 331-8 chr11 114945269 114945715 + 1.33333 NA Intergenic MIR|SINE|MIR 266965 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 288.833-4 chr12 13592558 13592806 + 1.33333 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -215937 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 174.666-6 chr4 164697758 164697973 + 1.33333 NA Intergenic Intergenic -56266 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 223.333-26 chr2 142996999 142997303 + 1.33333 NA intron (NM_001199241, intron 11 of 14) intron (NM_001199241, intron 11 of 14) 119487 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 267.333-19 chr4 159274621 159274959 + 1.33333 NA intron (NM_001351727, intron 1 of 24) intron (NM_001351727, intron 1 of 24) 6981 NM_001351728 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 215.333-25 chr2 160894915 160895131 + 1.33333 NA Intergenic Intergenic -241932 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 263.5-24 chr5 55537193 55537579 + 1.33333 NA Intergenic AluSc|SINE|Alu -2308 NR_103485 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 208.333-25 chr3 31080353 31080615 + 1.33333 NA Intergenic HAL1|LINE|L1 81303 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 187.5-42 chr8 34822870 34823336 + 1.33333 NA intron (NR_125746, intron 3 of 3) L1MC4a|LINE|L1 39182 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 243.166-5 chr2 39528395 39528778 + 1.33333 NA intron (NR_037875, intron 5 of 5) L3|LINE|CR1 91170 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 364.333-6 chr3 2167129 2167538 + 1.33333 NA intron (NM_175607, intron 2 of 24) L1MEd|LINE|L1 -23092 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 352.667-8 chr4 154624012 154624464 + 1.33333 NA Intergenic Intergenic -11430 NM_000509 2266 Hs.727584 NM_000509 ENSG00000171557 FGG - fibrinogen gamma chain protein-coding 211-48 chr8 133913914 133914143 + 1.33333 NA Intergenic Intergenic 27532 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 240.5-10 chr17 56833934 56834150 + 1.33333 NA promoter-TSS (NM_003647) promoter-TSS (NM_003647) -109 NM_003647 8526 Hs.239514 NM_003647 ENSG00000153933 DGKE AHUS7|DAGK5|DAGK6|DGK|NPHS7 diacylglycerol kinase epsilon protein-coding 245-9 chr12 76028019 76028480 + 1.33333 NA 3' UTR (NM_007350, exon 2 of 2) 3' UTR (NM_007350, exon 2 of 2) 3527 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 274.333 chr1 93158218 93158635 + 1.33333 NA intron (NM_001167830, intron 2 of 4) intron (NM_001167830, intron 2 of 4) 21987 NR_030761 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 270-27 chr3 132658913 132659171 + 1.33333 NA promoter-TSS (NM_001321239) promoter-TSS (NM_001321239) -455 NM_001321239 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 720.5 chr2 231707054 231708553 + 1.33333 NA promoter-TSS (NM_002823) promoter-TSS (NM_002823) -722 NM_002823 5757 Hs.459927 NM_002823 ENSG00000187514 PTMA TMSA prothymosin alpha protein-coding 345.666-3 chr8 123270143 123270597 + 1.33333 NA intron (NR_037873, intron 1 of 3) intron (NR_037873, intron 1 of 3) 3916 NR_037874 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 201.333-48 chr7 102981566 102981821 + 1.33333 NA intron (NR_105043, intron 7 of 20) MLT1A0|LTR|ERVL-MaLR 8263 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 337.666-2 chr17 54486717 54487074 + 1.33333 NA Intergenic MLT1A|LTR|ERVL-MaLR -413796 NM_001321175 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 167.666-3 chr10 76616285 76616455 + 1.33333 NA Intergenic L1PA14|LINE|L1 -271674 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 323.999-3 chr6 46588643 46588930 + 1.33333 NA intron (NM_016593, intron 8 of 11) (GTGTTT)n|Simple_repeat|Simple_repeat 64032 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 183.667-50 chr6 110823517 110823794 + 1.33333 NA intron (NM_001287215, intron 1 of 8) L1PB|LINE|L1 -7800 NM_001300964 23097 Hs.744895 NM_015076 ENSG00000155111 CDK19 CDC2L6|CDK11|bA346C16.3 cyclin dependent kinase 19 protein-coding 397.5-7 chr13 19961363 19962074 + 1.33333 NA intron (NM_197968, intron 2 of 24) intron (NM_197968, intron 2 of 24) 1904 NR_148365 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 309.666-4 chr2 58046481 58046884 + 1.33333 NA promoter-TSS (NM_001288839) promoter-TSS (NM_001288839) -30 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 235.833-15 chr3 94115259 94115622 + 1.33333 NA intron (NM_022072, intron 5 of 5) intron (NM_022072, intron 5 of 5) 52379 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 363.666 chr12 44062115 44062431 + 1.33333 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 226192 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 211.333-6 chr10 82839563 82839770 + 1.33333 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -606746 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 307.666-2 chr19 47707441 47707731 + 1.33333 NA Intergenic L2a|LINE|L2 -5836 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 271-8 chr14 33929196 33929601 + 1.33333 NA intron (NM_001308103, intron 2 of 4) AluSp|SINE|Alu 21676 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 344-9 chr18 36698037 36698515 + 1.33333 NA intron (NM_001281740, intron 17 of 28) intron (NM_001281740, intron 17 of 28) -34858 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 203.333-14 chr11 77607821 77607975 + 1.33333 NA intron (NM_173039, intron 2 of 2) intron (NM_173039, intron 2 of 2) 17945 NM_173039 282679 Hs.503345 NM_173039 ENSG00000178301 AQP11 AQPX1 aquaporin 11 protein-coding 271.333-2 chr1 209353150 209353390 + 1.33333 NA Intergenic Intergenic -18785 NR_146491 101929476 Hs.568721 NR_146491 LINC01698 - long intergenic non-protein coding RNA 1698 ncRNA 393.999-2 chr2 102589726 102590122 + 1.33333 NA Intergenic Intergenic -29629 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 352.166-2 chr18 35908062 35908468 + 1.33333 NA Intergenic Intergenic -3339 NR_029616 406963 NR_029616 ENSG00000207797 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 166.333-23 chr16 75383898 75384093 + 1.33333 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) 49508 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 197.333-40 chr8 129727091 129727320 + 1.33333 NA Intergenic Intergenic -46966 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 197-8 chr12 127422112 127422342 + 1.33333 NA Intergenic Intergenic -82155 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 213-27 chr2 209638192 209638730 + 1.33333 NA intron (NM_001039538, intron 4 of 14) intron (NM_001039538, intron 4 of 14) 58782 NM_001363911 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 301.834-9 chr4 104393919 104394504 + 1.33333 NA Intergenic Intergenic -96754 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 200.833-2 chr1 44918389 44918686 + 1.33333 NA intron (NM_001166588, intron 5 of 9) AluSq2|SINE|Alu 68058 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 280.501-8 chr5 3423201 3423532 + 1.33333 NA intron (NR_033898, intron 2 of 4) L1M3|LINE|L1 -29450 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 335.001-2 chr12 106089641 106090039 + 1.33333 NA intron (NM_014840, intron 2 of 6) intron (NM_014840, intron 2 of 6) 50193 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 177.5-39 chr4 48970427 48970636 + 1.33333 NA Intergenic MLT2B4|LTR|ERVL -15744 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 325.333-14 chr7 136861091 136861657 + 1.33333 NA Intergenic Intergenic -7278 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 245-39 chr8 132492392 132492662 + 1.33333 NA Intergenic Intergenic -11432 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 315.167 chr10 30958052 30958527 + 1.33333 NA intron (NR_026560, intron 1 of 6) L4_A_Mam|LINE|RTE-X 41228 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 223.333-7 chr10 16046797 16046982 + 1.33333 NA Intergenic L1ME1|LINE|L1 -186356 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 173.5-12 chr11 106787771 106788024 + 1.33333 NA intron (NM_001256424, intron 5 of 8) L1MA3|LINE|L1 230579 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 481.666 chr1 188123294 188123751 + 1.33333 NA Intergenic Intergenic 679894 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 166.666-4 chr2 52972493 52972649 + 1.33333 NA Intergenic Intergenic -269956 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 254.666-8 chr5 91597985 91598265 + 1.33333 NA Intergenic Intergenic -214808 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 232-11 chr11 60879427 60879657 + 1.33333 NA Intergenic L1ME3C|LINE|L1 12000 NM_207341 22917 Hs.172130 NM_207341 ENSG00000149506 ZP1 HEL163|OOMD|OOMD1 zona pellucida glycoprotein 1 protein-coding 168.333-55 chr5 106127306 106127645 + 1.33333 NA Intergenic Intergenic 883539 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 274-15 chr18 60558319 60558716 + 1.33333 NA Intergenic L1MEf|LINE|L1 -185742 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 238.833-3 chr1 203376540 203376917 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -25606 NM_002023 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 178.666 chr1 189889386 189889579 + 1.33333 NA Intergenic L1MEg|LINE|L1 586528 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 445.667-4 chr7 112994387 112994915 + 1.33333 NA intron (NR_110162, intron 1 of 5) L1MA8|LINE|L1 992 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 258.5-23 chr4 64132115 64132375 + 1.33333 NA Intergenic Intergenic 277205 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 202.167-12 chr14 88032156 88032488 + 1.33333 NA intron (NR_046094, intron 2 of 3) ERVL-E-int|LTR|ERVL -6010 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 408.833-2 chr10 14959262 14959972 + 1.33333 NA intron (NR_147060, intron 1 of 2) CpG 229 NR_147060 644890 Hs.257249 NM_001080836 ENSG00000197889 MEIG1 SPATA39|bA2K17.3 meiosis/spermiogenesis associated 1 protein-coding 279.333-17 chr3 86483478 86483796 + 1.33333 NA intron (NR_135563, intron 1 of 1) L2c|LINE|L2 1694 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 376.167-6 chr16 13909906 13910526 + 1.33333 NA Intergenic Intergenic -9941 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 179.333-12 chr15 60797400 60797619 + 1.33333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 115940 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 241.666-5 chr16 3618873 3619160 + 1.33333 NA Intergenic Intergenic -7410 NM_032444 84464 Hs.143681 NM_032444 ENSG00000188827 SLX4 BTBD12|FANCP|MUS312 SLX4 structure-specific endonuclease subunit protein-coding 325.667-3 chr15 62728148 62728739 + 1.33333 NA intron (NM_015059, intron 25 of 55) L1ME3A|LINE|L1 81132 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 166-58 chr5 53989641 53989882 + 1.33333 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -38162 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 197.333-22 chr20 53917082 53917262 + 1.33333 NA Intergenic Intergenic -41463 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 220.666-5 chr15 93164204 93164607 + 1.33333 NA Intergenic MER20B|DNA|hAT-Charlie -41661 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 258.666-8 chr2 42379379 42379740 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -10602 NM_001319036 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 267-29 chr7 85011181 85011501 + 1.33333 NA intron (NM_152754, intron 15 of 16) L2a|LINE|L2 110590 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 218.333-13 chr18 68845615 68845864 + 1.33333 NA intron (NM_001093729, intron 5 of 9) intron (NM_001093729, intron 5 of 9) 47659 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 342.666-6 chr9 73037820 73038259 + 1.33333 NA Intergenic Intergenic -84986 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 794.334-2 chr9 71715965 71716869 + 1.33333 NA intron (NM_013390, intron 14 of 23) intron (NM_013390, intron 14 of 23) 52096 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 309.334-5 chr2 233487051 233487457 + 1.33333 NA intron (NM_001365479, intron 28 of 31) L1M5|LINE|L1 78319 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 258.5-17 chr2 121131365 121131699 + 1.33333 NA Intergenic MIR|SINE|MIR 153670 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 199.667-31 chr3 195442990 195443411 + 1.33333 NA promoter-TSS (NM_012287) promoter-TSS (NM_012287) -180 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 227.666 chr1 74224241 74224493 + 1.33333 NA intron (NM_001112808, intron 3 of 26) L1MA2|LINE|L1 -11020 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 328.333-9 chr5 91848094 91848565 + 1.33333 NA Intergenic Intergenic -465012 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 231.167-31 chr8 110203507 110203864 + 1.33333 NA Intergenic Intergenic -227914 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 259.333-21 chr2 44698784 44699072 + 1.33333 NA intron (NM_024766, intron 3 of 10) Tigger1|DNA|TcMar-Tigger 239960 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 199.333-20 chr15 67239944 67240331 + 1.33333 NA intron (NM_001271885, intron 1 of 9) intron (NM_001271885, intron 1 of 9) 14524 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 337.833-5 chr2 19991983 19992355 + 1.33333 NA 3' UTR (NM_002381, exon 8 of 8) 3' UTR (NM_002381, exon 8 of 8) 1965 NR_110235 101928222 Hs.6985 NR_110235 LOC101928222 - uncharacterized LOC101928222 ncRNA 382.666-4 chr5 37768040 37768488 + 1.33333 NA Intergenic Intergenic 66558 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 191.166-2 chr2 126954858 126955058 + 1.33333 NA Intergenic L1ME1|LINE|L1 56068 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 240-30 chr2 62813920 62814325 + 1.33333 NA intron (NM_001142615, intron 5 of 22) MSTD|LTR|ERVL-MaLR 107225 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 232-40 chr7 100065840 100066142 + 1.33333 NA TTS (NM_001362781) TTS (NM_001362781) 15732 NM_001362775 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding 258.666-11 chr8 25578177 25578450 + 1.33333 NA Intergenic Intergenic 119080 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 338.666-7 chr9 110692658 110693066 + 1.33333 NA intron (NM_001166281, intron 3 of 11) HAL1ME|LINE|L1 24071 NM_005592 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 269.333-22 chr6 136804144 136804474 + 1.33333 NA Intergenic AluJo|SINE|Alu -11832 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 440.999-2 chr7 35494232 35494681 + 1.33333 NA Intergenic Intergenic 180601 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 376.333-11 chr6 162133859 162134225 + 1.33333 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -593090 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 347.333-18 chr8 81630323 81630817 + 1.33333 NA intron (NR_146081, intron 1 of 7) CpG 707 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 275.333-19 chr8 115845508 115845781 + 1.33333 NA Intergenic Intergenic -176669 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 327-5 chr12 14202428 14202855 + 1.33333 NA Intergenic MamGypLTR1c|LTR|Gypsy -162991 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 199.667-38 chr6 3707141 3707405 + 1.33333 NA Intergenic L1MB3|LINE|L1 44739 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 629.501 chr9 34760375 34761151 + 1.33333 NA Intergenic AluJb|SINE|Alu -31275 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 393.332 chr15 40894976 40895336 + 1.33333 NA intron (NM_020857, intron 1 of 4) intron (NM_020857, intron 1 of 4) 706 NM_020857 57617 Hs.23876 NM_020857 ENSG00000104142 VPS18 PEP3 VPS18 core subunit of CORVET and HOPS complexes protein-coding 351.333-9 chr3 45692934 45693373 + 1.33333 NA intron (NM_001319073, intron 2 of 20) Tigger3a|DNA|TcMar-Tigger 3757 NM_014016 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 200.667 chr1 205397145 205397607 + 1.33333 NA intron (NR_037583, intron 2 of 3) MIR3|SINE|MIR 24124 NR_038425 284576 Hs.585440 NR_038425 ENSG00000226235 LEMD1-AS1 - LEMD1 antisense RNA 1 ncRNA 239.333-22 chr3 177461103 177461341 + 1.33333 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 19301 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 471.833 chr10 17375952 17376489 + 1.33333 NA intron (NM_001004470, intron 3 of 7) intron (NM_001004470, intron 3 of 7) -10716 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 410.166-2 chr4 83351946 83352319 + 1.33333 NA Intergenic Intergenic -16979 NM_006665 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 297.667-14 chr19 45886159 45886496 + 1.33333 NA promoter-TSS (NM_015649) promoter-TSS (NM_015649) -186 NM_015649 26145 Hs.515477 NM_015649 ENSG00000170604 IRF2BP1 - interferon regulatory factor 2 binding protein 1 protein-coding 283.666-2 chr17 50868377 50868738 + 1.33333 NA promoter-TSS (NM_001243877) promoter-TSS (NM_001243877) -579 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 273.666-3 chr18 54008344 54008680 + 1.33333 NA Intergenic L1MA3|LINE|L1 213900 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 327-16 chr4 89225982 89226468 + 1.33333 NA Intergenic Intergenic 81575 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 397.167-3 chr5 153551394 153552055 + 1.33333 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 59552 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 186.666-6 chr5 62526435 62526699 + 1.33333 NA intron (NM_016338, intron 21 of 29) intron (NM_016338, intron 21 of 29) -52168 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 340.5-2 chr11 86274660 86275028 + 1.33333 NA intron (NM_001308007, intron 10 of 12) L1MD1|LINE|L1 -3489 NR_106813 102465452 NR_106813 ENSG00000283744 MIR6755 hsa-mir-6755 microRNA 6755 ncRNA 197.333-34 chr6 140740738 140740949 + 1.33333 NA Intergenic MIR|SINE|MIR 57029 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 331-11 chr18 2650930 2651469 + 1.33333 NA TTS (NR_033754) TTS (NR_033754) 4196 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 289.333-18 chr3 2878059 2878454 + 1.33333 NA intron (NM_175607, intron 8 of 24) intron (NM_175607, intron 8 of 24) -13959 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 219.166-2 chr12 74641110 74641311 + 1.33333 NA Intergenic Intergenic 103375 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 194-17 chr15 24930300 24930470 + 1.33333 NA intron (NM_001349456, intron 4 of 12) intron (NM_001349456, intron 4 of 12) -24508 NM_003097 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 223.5-25 chr7 46687550 46687762 + 1.33333 NA TTS (NR_134575) TTS (NR_134575) 9466 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 441.332 chr3 120918610 120918992 + 1.33333 NA intron (NR_145517, intron 2 of 8) intron (NR_145517, intron 2 of 8) 10124 NM_001348343 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 226.667-7 chr10 90960508 90960783 + 1.33333 NA intron (NR_131214, intron 3 of 5) ERVL-B4-int|LTR|ERVL 13345 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 328.833-12 chr9 27526358 27526654 + 1.33333 NA TTS (NM_020124) TTS (NM_020124) 2192 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 208-40 chr8 57871270 57871511 + 1.33333 NA Intergenic Intergenic -106968 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 222.667-22 chr19 6393185 6393469 + 1.33333 NA promoter-TSS (NM_002096) promoter-TSS (NM_002096) -163 NM_002096 2962 Hs.68257 NM_002096 ENSG00000125651 GTF2F1 BTF4|RAP74|TF2F1|TFIIF general transcription factor IIF subunit 1 protein-coding 282-17 chr2 27064649 27065245 + 1.33333 NA intron (NR_104246, intron 11 of 15) AluSx1|SINE|Alu 6707 NM_001134693 100128731 Hs.502948 NM_001134693 ENSG00000228474 OST4 - oligosaccharyltransferase complex subunit 4, non-catalytic protein-coding 301-24 chr7 66525604 66526036 + 1.33333 NA Intergenic AluSp|SINE|Alu 32129 NR_134572 100289098 Hs.662276 NR_134570 ENSG00000237310 GS1-124K5.4 - uncharacterized LOC100289098 ncRNA 204.333-46 chr7 137202971 137203238 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -38763 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 167.333-3 chr1 239368505 239368655 + 1.33333 NA Intergenic Intergenic -17988 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 251.333-21 chr3 196867545 196867920 + 1.33333 NA promoter-TSS (NM_001308045) promoter-TSS (NM_001308045) -124 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 183.166-2 chr18 36941886 36942074 + 1.33333 NA intron (NM_001353918, intron 5 of 9) Tigger9b|DNA|TcMar-Tigger -18166 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 279.667 chr1 26234510 26235083 + 1.33333 NA intron (NM_022778, intron 1 of 13) L2b|LINE|L2 596 NM_001281517 64793 Hs.63795 NM_022778 ENSG00000130695 CEP85 CCDC21 centrosomal protein 85 protein-coding 481.166 chr8 93880022 93880718 + 1.33333 NA Intergenic Intergenic 35749 NR_039602 100616169 NR_039602 ENSG00000284288 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 320.166 chr18 64145556 64145873 + 1.33333 NA intron (NR_033881, intron 2 of 9) AluSq2|SINE|Alu 3312 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 278.333-24 chr8 138956058 138956366 + 1.33333 NA Intergenic MER83|LTR|ERV1 -42171 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 253.999-2 chr21 20060992 20061262 + 1.33333 NA Intergenic L1MB8|LINE|L1 -161372 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 165.333-49 chr8 107790334 107790498 + 1.33333 NA Intergenic L1M2|LINE|L1 291523 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 222.5-23 chr21 30504455 30504991 + 1.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -2582 NM_181611 337972 Hs.553694 NM_181611 ENSG00000186977 KRTAP19-5 KAP19.5 keratin associated protein 19-5 protein-coding 369.833 chr2 212892403 212892779 + 1.33333 NA Intergenic Intergenic -33666 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 209.833-19 chr20 46667523 46667899 + 1.33333 NA intron (NM_001193340, intron 2 of 12) MIRb|SINE|MIR -16252 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 167.667-4 chr11 22476123 22476349 + 1.33333 NA intron (NR_120583, intron 2 of 3) L2a|LINE|L2 15783 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 310-6 chr11 74154276 74154678 + 1.33333 NA intron (NM_001286577, intron 3 of 32) (AATG)n|Simple_repeat|Simple_repeat 16525 NM_015531 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 domain containing 3 centriole elongation regulator protein-coding 322.666-7 chr3 188882178 188882664 + 1.33333 NA 3' UTR (NM_001167671, exon 11 of 11) 3' UTR (NM_001167671, exon 11 of 11) 65218 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 169.666-2 chr5 16478043 16478257 + 1.33333 NA intron (NM_019000, intron 4 of 6) intron (NM_019000, intron 4 of 6) -12350 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 293-27 chr9 38463895 38464253 + 1.33333 NA Intergenic L1ME1|LINE|L1 -39620 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 263.333-12 chr2 44524618 44525041 + 1.33333 NA intron (NM_024766, intron 3 of 10) L2c|LINE|L2 162882 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 340.666-3 chr5 97727240 97727650 + 1.33333 NA Intergenic Charlie1b|DNA|hAT-Charlie -113313 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 252.833-18 chr8 110030986 110031388 + 1.33333 NA Intergenic Intergenic -55416 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 391.333-8 chr8 91694685 91695405 + 1.33333 NA Intergenic L1ME4a|LINE|L1 322635 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 214.333-32 chr4 41525040 41525222 + 1.33333 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -13026 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 242-27 chr5 172951462 172951779 + 1.33333 NA 3' UTR (NM_001031711, exon 10 of 10) 3' UTR (NM_001031711, exon 10 of 10) -7109 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 393.5-10 chr3 133593156 133593664 + 1.33333 NA Intergenic Intergenic 18976 NM_001282763 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 246-15 chr2 103662524 103662900 + 1.33333 NA Intergenic Intergenic -678283 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 297.167-5 chr17 68791847 68792220 + 1.33333 NA Intergenic Intergenic 163359 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 344.333-14 chr7 131071490 131071881 + 1.33333 NA intron (NR_109850, intron 2 of 5) intron (NR_109850, intron 2 of 5) 35345 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 223.333-23 chr2 72072639 72072828 + 1.33333 NA Intergenic L1ME1|LINE|L1 75129 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 466.999 chr7 145814623 145815112 + 1.33333 NA Intergenic Intergenic -959404 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 246.667-6 chr15 67037872 67038217 + 1.33333 NA intron (NR_135686, intron 2 of 5) intron (NR_135686, intron 2 of 5) 26138 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 249.666-3 chr11 100439089 100439553 + 1.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -247967 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 224.5-6 chr11 113793097 113793349 + 1.33333 NA Intergenic L1ME3F|LINE|L1 13427 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 386.166-3 chr9 78121311 78121823 + 1.33333 NA Intergenic MER5A1|DNA|hAT-Charlie -89756 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 235.499 chr2 196751232 196751439 + 1.33333 NA Intergenic Intergenic 37797 NM_001353340 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 241.666-4 chr13 49669649 49669849 + 1.33333 NA intron (NR_103803, intron 1 of 2) intron (NR_103803, intron 1 of 2) 21737 NM_032565 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 347.333-5 chr12 70190394 70190834 + 1.33333 NA Intergenic L1MEf|LINE|L1 -52416 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 250.667-33 chr5 15821385 15821715 + 1.33333 NA intron (NM_001278317, intron 2 of 3) MIRb|SINE|MIR -113632 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 336-5 chr10 17284471 17284833 + 1.33333 NA Intergenic MER103C|DNA|hAT-Charlie -54667 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 207-20 chr3 1724864 1725039 + 1.33333 NA Intergenic MIR|SINE|MIR -373852 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 196.167-36 chr8 31835885 31836222 + 1.33333 NA intron (NM_013962, intron 1 of 4) MIR3|SINE|MIR -189683 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 236.333-29 chr7 15612997 15613350 + 1.33333 NA intron (NM_005924, intron 2 of 2) intron (NM_005924, intron 2 of 2) -51158 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 319-9 chr3 63127370 63127863 + 1.33333 NA Intergenic Intergenic 24928 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 450.166 chr11 113974500 113975119 + 1.33333 NA promoter-TSS (NR_046363) promoter-TSS (NR_046363) -266 NR_046363 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 306.666-3 chr4 109669854 109670139 + 1.33333 NA intron (NM_017918, intron 4 of 7) L1MC1|LINE|L1 33449 NM_001226 839 Hs.654616 NM_001226 ENSG00000138794 CASP6 MCH2 caspase 6 protein-coding 515.166 chr14 24146761 24147380 + 1.33333 NA promoter-TSS (NM_017999) promoter-TSS (NM_017999) 195 NM_001310332 55072 Hs.375217 NM_017999 ENSG00000092098 RNF31 HOIP|Paul|ZIBRA ring finger protein 31 protein-coding 274.333-21 chr6 44423834 44424059 + 1.33333 NA intron (NM_001253, intron 10 of 15) intron (NM_001253, intron 10 of 15) -11695 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 312.333-16 chr20 32746889 32747349 + 1.33333 NA Intergenic AluSc|SINE|Alu -3111 NM_001099339 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 214.333-24 chr21 30691117 30691447 + 1.33333 NA Intergenic Intergenic 27495 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 289.999 chr2 46462324 46462541 + 1.33333 NA Intergenic MIRb|SINE|MIR -17133 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000284701 TMEM247 - transmembrane protein 247 protein-coding 181.833 chr1 151228750 151228923 + 1.33333 NA intron (NM_001135637, intron 3 of 13) intron (NM_001135637, intron 3 of 13) -25898 NM_001330692 5710 Hs.505059 NM_002810 ENSG00000159352 PSMD4 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 proteasome 26S subunit, non-ATPase 4 protein-coding 319.333-3 chr10 119858523 119859037 + 1.33333 NA intron (NM_024834, intron 4 of 15) intron (NM_024834, intron 4 of 15) 14103 NM_001256378 79892 Hs.124246 NM_024834 ENSG00000197771 MCMBP C10orf119|MCM-BP minichromosome maintenance complex binding protein protein-coding 167.166-4 chr4 52177064 52177237 + 1.33333 NA Intergenic MIR|SINE|MIR 125846 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 274-5 chr10 5623207 5623570 + 1.33333 NA Intergenic Intergenic -27270 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LINC02657 - long intergenic non-protein coding RNA 2657 ncRNA 230.667-16 chr20 55301478 55301756 + 1.33333 NA Intergenic L2c|LINE|L2 -121426 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 221.833-14 chr3 25464422 25464868 + 1.33333 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 6335 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 207.333-3 chr1 119183287 119183582 + 1.33333 NA non-coding (NR_125974, exon 4 of 4) non-coding (NR_125974, exon 4 of 4) -42762 NM_201263 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 302.333-8 chr21 38159410 38159678 + 1.33333 NA Intergenic Intergenic 38093 NR_026838 84677 Hs.733345 NM_032589 ENSG00000198054 DSCR8 C21orf65|CT25.1a|CT25.1b|MMA-1|MMA-1a|MMA-1b|MMA1|MTAG2 Down syndrome critical region 8 ncRNA 301-11 chr2 86168250 86168791 + 1.33333 NA intron (NM_006839, intron 6 of 14) AluSx1|SINE|Alu 24588 NR_039939 100616159 NR_039939 ENSG00000265420 MIR4779 - microRNA 4779 ncRNA 329.666-4 chr16 30865944 30866411 + 1.33333 NA intron (NM_001286526, intron 5 of 5) L1MEj|LINE|L1 9146 NR_039744 100616231 NR_039744 ENSG00000265991 MIR4519 - microRNA 4519 ncRNA 259.833-16 chr7 15138394 15138613 + 1.33333 NA Intergenic Intergenic -163645 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 332.166-6 chr2 180140155 180140488 + 1.33333 NA Intergenic L1PB2|LINE|L1 -133024 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 286.666-7 chr20 36715967 36716192 + 1.33333 NA intron (NM_032013, intron 2 of 15) AluJo|SINE|Alu 30011 NR_038370 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 359.001-4 chr20 56571797 56572379 + 1.33333 NA Intergenic Intergenic -5475 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 463.667-5 chr15 39782255 39782881 + 1.33333 NA promoter-TSS (NR_135665) promoter-TSS (NR_135665) 273 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 165.667-9 chr10 83006177 83006413 + 1.33333 NA Intergenic L2a|LINE|L2 670794 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 233.666-6 chr4 165464960 165465246 + 1.33333 NA intron (NM_001873, intron 2 of 8) intron (NM_001873, intron 2 of 8) 78861 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 185.333-51 chr8 79408582 79408725 + 1.33333 NA Intergenic Intergenic 76465 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 260.666-4 chr3 167170469 167170751 + 1.33333 NA Intergenic Intergenic 209673 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 242.166 chr1 88736572 88736808 + 1.33333 NA intron (NM_001320708, intron 1 of 20) L1M1|LINE|L1 -51486 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 261.334-7 chr2 61801875 61802259 + 1.33333 NA Intergenic Intergenic 51993 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 202-3 chr1 185608115 185608475 + 1.33333 NA intron (NR_110793, intron 2 of 3) L1PA14|LINE|L1 20193 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 294.333-9 chr2 135613034 135613483 + 1.33333 NA intron (NM_001282799, intron 3 of 22) MLT1E3|LTR|ERVL-MaLR 26906 NM_001282798 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 166.166-6 chr7 48829446 48829669 + 1.33333 NA Intergenic MIR|SINE|MIR -94990 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 167.666-5 chr18 21572842 21573011 + 1.33333 NA intron (NM_052911, intron 4 of 11) AluSp|SINE|Alu 27778 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 225.167-23 chr4 4575199 4575581 + 1.33333 NA intron (NR_037888, intron 2 of 5) CpG -33047 NM_001346282 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 211.333-12 chr13 41385291 41385552 + 1.33333 NA Intergenic Intergenic -57143 NR_002163 100506759 Hs.507861 NR_002163 OR7E37P OR7E48P|OST193|hg533 olfactory receptor family 7 subfamily E member 37 pseudogene pseudo 228.166 chr14 47806346 47806630 + 1.33333 NA Intergenic Intergenic -11474 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 193.5-9 chr12 760262 760515 + 1.33333 NA intron (NM_001184985, intron 1 of 27) MIRc|SINE|MIR 7465 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 352-7 chr20 2006661 2007245 + 1.33333 NA non-coding (NR_134520, exon 4 of 4) non-coding (NR_134520, exon 4 of 4) -12668 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 252.999 chr10 35640528 35640718 + 1.33333 NA TTS (NR_039831) TTS (NR_039831) 629 NR_039831 100616500 NR_039831 ENSG00000284265 MIR4683 - microRNA 4683 ncRNA 209.333-11 chr10 87771603 87771854 + 1.33333 NA intron (NM_001321967, intron 6 of 9) intron (NM_001321967, intron 6 of 9) 46503 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 338.833-6 chr9 14428740 14429205 + 1.33333 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) -29989 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 284.833-18 chr9 84712958 84713371 + 1.33333 NA intron (NM_001018064, intron 6 of 17) L1ME3G|LINE|L1 7263 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 237.499 chr15 73265773 73265979 + 1.33333 NA intron (NM_002499, intron 15 of 28) intron (NM_002499, intron 15 of 28) -34034 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 246.5-4 chr10 66170592 66171021 + 1.33333 NA intron (NM_001127384, intron 13 of 17) L2a|LINE|L2 599381 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 282.666 chr13 42798265 42798545 + 1.33333 NA Intergenic Intergenic 14157 NR_125747 103689845 Hs.422131 NR_125747 ENSG00000271216 LINC01050 - long intergenic non-protein coding RNA 1050 ncRNA 231.5-15 chr16 53639268 53639698 + 1.33333 NA intron (NM_015272, intron 19 of 26) L1ME4a|LINE|L1 64376 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 261.333-12 chr5 19054009 19054213 + 1.33333 NA Intergenic MIR|SINE|MIR 832161 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 332.166-5 chr17 58167401 58167824 + 1.33333 NA Intergenic Intergenic -2044 NM_001004707 124538 Hs.446879 NM_001004707 ENSG00000255713 OR4D2 BC2009|OR17-24 olfactory receptor family 4 subfamily D member 2 protein-coding 188.666-3 chr4 72128228 72128427 + 1.33333 NA intron (NM_001144756, intron 2 of 4) intron (NM_001144756, intron 2 of 4) 89195 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 393.5-3 chr14 64799745 64800282 + 1.33333 NA intron (NM_001024858, intron 7 of 34) intron (NM_001024858, intron 7 of 34) -14327 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 238.166-4 chr4 67701184 67701473 + 1.33333 NA promoter-TSS (NM_018227) promoter-TSS (NM_018227) 50 NR_015439 550112 Hs.479879 NR_015439 ENSG00000248049 UBA6-AS1 - UBA6 antisense RNA 1 (head to head) ncRNA 238.666-10 chr7 144473960 144474246 + 1.33333 NA intron (NM_001042482, intron 7 of 7) L2a|LINE|L2 -63876 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 167.333-39 chr3 127524826 127525025 + 1.33333 NA intron (NR_125397, intron 5 of 6) MamRep4096|DNA|hAT-Tip100 12855 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 176.666-11 chr8 130531926 130532105 + 1.33333 NA Intergenic MSTB|LTR|ERVL-MaLR -88341 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 204-29 chr3 114624999 114625258 + 1.33333 NA promoter-TSS (NM_001164347) promoter-TSS (NM_001164347) -183 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 350.166 chr22 28540220 28540539 + 1.33333 NA intron (NM_001145418, intron 2 of 22) MSTA|LTR|ERVL-MaLR 80510 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 264-35 chrX 48972283 48972505 + 1.33333 NA promoter-TSS (NM_004979) promoter-TSS (NM_004979) -550 NM_004979 3750 Hs.55276 NM_004979 ENSG00000102057 KCND1 KV4.1 potassium voltage-gated channel subfamily D member 1 protein-coding 472.5-2 chr18 74116750 74117600 + 1.33333 NA intron (NM_001142958, intron 8 of 9) intron (NM_001142958, intron 8 of 9) 30659 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 268-35 chr8 3611541 3611829 + 1.33333 NA intron (NM_033225, intron 8 of 69) Charlie1a|DNA|hAT-Charlie -883234 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 218.333-32 chr9 26899135 26899443 + 1.33333 NA Intergenic MLT1H|LTR|ERVL-MaLR -6461 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 265.666-10 chr7 34088965 34089280 + 1.33333 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 183583 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 174.333-34 chr5 136020469 136020726 + 1.33333 NA Intergenic Intergenic -8391 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 417.834-3 chr8 93641658 93642121 + 1.33333 NA intron (NR_033858, intron 5 of 10) intron (NR_033858, intron 5 of 10) 58544 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 208.667-28 chr2 178132440 178132695 + 1.33333 NA Intergenic Intergenic 20130 NM_001365579 129831 Hs.377257 NM_152945 ENSG00000155636 RBM45 DRB1|RB-1 RNA binding motif protein 45 protein-coding 325.666-6 chr3 50448681 50449049 + 1.33333 NA intron (NM_001291101, intron 2 of 37) intron (NM_001291101, intron 2 of 37) 54769 NM_001005505 9254 Hs.476273 NM_006030 ENSG00000007402 CACNA2D2 CACNA2D calcium voltage-gated channel auxiliary subunit alpha2delta 2 protein-coding 231.334-6 chrX 91091877 91092092 + 1.33333 NA Intergenic L1PA14|LINE|L1 -342855 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 338.666-2 chr4 21057242 21057642 + 1.33333 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -73433 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 308.667-15 chr5 74344390 74344791 + 1.33333 NA Intergenic Intergenic 22104 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 265-17 chr4 48796869 48797082 + 1.33333 NA Intergenic Intergenic -16676 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 249.333-14 chr17 30906046 30906320 + 1.33333 NA promoter-TSS (NM_024683) promoter-TSS (NM_024683) 55 NM_024683 79736 Hs.317340 NM_024683 ENSG00000172171 TEFM C17orf42 transcription elongation factor, mitochondrial protein-coding 372-9 chr3 22920056 22920561 + 1.33333 NA Intergenic Intergenic 282270 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 184.666-2 chr11 71563493 71563669 + 1.33333 NA Intergenic L1MA5|LINE|L1 -1982 NM_001012710 387273 Hs.661887 NM_001012710 ENSG00000204572 KRTAP5-10 KRTAP5.10 keratin associated protein 5-10 protein-coding 344.999 chr2 53934044 53934381 + 1.33333 NA intron (NM_014614, intron 8 of 46) intron (NM_014614, intron 8 of 46) 36781 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 187-49 chr8 139285476 139285730 + 1.33333 NA Intergenic Intergenic -371562 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 198.667-22 chr2 2864005 2864261 + 1.33333 NA Intergenic Intergenic 261893 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 193.5-4 chr1 113898378 113898672 + 1.33333 NA intron (NR_037864, intron 4 of 4) intron (NR_037864, intron 4 of 4) -6094 NM_001319947 64858 Hs.591412 NM_022836 ENSG00000118655 DCLRE1B APOLLO|SNM1B|SNMIB DNA cross-link repair 1B protein-coding 342-6 chr2 104748570 104748928 + 1.33333 NA intron (NR_038231, intron 3 of 3) (AAT)n|Simple_repeat|Simple_repeat 8970 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 231.333-13 chr12 16995342 16995724 + 1.33333 NA Intergenic Intergenic 6786 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 222.333-28 chr6 50659724 50659956 + 1.33333 NA Intergenic MamRep1151|LTR?|LTR? -53704 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 243.333-24 chr2 150526815 150527211 + 1.33333 NA Intergenic Intergenic -39318 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 329.166-4 chr2 78993996 78994335 + 1.33333 NA Intergenic MIR|SINE|MIR -31537 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 242.666-16 chr6 144482627 144483049 + 1.33333 NA intron (NM_007124, intron 26 of 73) intron (NM_007124, intron 26 of 73) 77183 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 188-57 chr9 77004239 77004507 + 1.33333 NA Intergenic Intergenic -15282 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 270.333-11 chr4 30383893 30384114 + 1.33333 NA Intergenic L1MEf|LINE|L1 -336366 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 285.666-4 chr12 57754637 57754880 + 1.33333 NA promoter-TSS (NM_138396) promoter-TSS (NM_138396) -345 NM_138396 92979 Hs.632709 NM_138396 ENSG00000139266 MARCH9 MARCH-IX|RNF179 membrane associated ring-CH-type finger 9 protein-coding 256.666-8 chr7 71870679 71870937 + 1.33333 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 466583 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 279-3 chr1 166905995 166906428 + 1.33333 NA Intergenic Intergenic -29947 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 225.5-5 chr11 94780855 94781128 + 1.33333 NA intron (NM_001301007, intron 1 of 11) intron (NM_001301007, intron 1 of 11) 12635 NM_130847 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 266.666-5 chr17 10772479 10772853 + 1.33333 NA intron (NR_073458, intron 1 of 3) intron (NR_073458, intron 1 of 3) 31433 NR_036581 100289255 Hs.306721 NR_036581 ENSG00000263429 TMEM238L LINC00675 transmembrane protein 238 like ncRNA 291.166-5 chr15 93445887 93446227 + 1.33333 NA Intergenic L1MD3|LINE|L1 239991 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 233.666-3 chr2 27753042 27753306 + 1.33333 NA Intergenic Intergenic -18543 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 241.166-5 chr9 26863327 26863534 + 1.33333 NA intron (NM_001167575, intron 4 of 5) intron (NM_001167575, intron 4 of 5) 29372 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 439.332-2 chr5 137838511 137838949 + 1.33333 NA Intergenic L1ME3G|LINE|L1 -29126 NM_006790 9499 Hs.84665 NM_006790 ENSG00000120729 MYOT LGMD1|LGMD1A|MFM3|TTID|TTOD myotilin protein-coding 228.333-9 chr11 21736579 21736902 + 1.33333 NA Intergenic Intergenic -456345 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 225.333-9 chr11 5940245 5940637 + 1.33333 NA Intergenic MLT1G|LTR|ERVL-MaLR -6906 NM_001003443 390083 Hs.553741 NM_001003443 ENSG00000184478 OR56A3 OR56A2P|OR56A3P|OR56A6 olfactory receptor family 56 subfamily A member 3 protein-coding 306.499 chr10 19453042 19453271 + 1.33333 NA intron (NM_001142308, intron 29 of 39) intron (NM_001142308, intron 29 of 39) 275394 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 297.999-4 chr8 123592449 123592829 + 1.33333 NA Intergenic MamRep605|LTR?|LTR? -51433 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 275.167-13 chr16 31696692 31697338 + 1.33333 NA Intergenic Intergenic -3598 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 502.501 chr9 3026105 3026755 + 1.33333 NA Intergenic Intergenic -155159 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 582.833 chr7 50962582 50963252 + 1.33333 NA Intergenic Intergenic -169464 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 314-2 chr11 57801254 57801565 + 1.33333 NA intron (NM_001331, intron 6 of 18) intron (NM_001331, intron 6 of 18) 39607 NM_001085459 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 220.333-6 chr11 82340820 82340994 + 1.33333 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 63006 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 242.666-4 chr10 63700191 63700525 + 1.33333 NA Intergenic Intergenic -178468 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 208.666-8 chr7 5520664 5520851 + 1.33333 NA intron (NR_126168, intron 1 of 3) L1MC1|LINE|L1 6903 NR_126168 221946 Hs.385633 NR_126168 LOC221946 - uncharacterized LOC221946 ncRNA 295.666-12 chr5 173496304 173496736 + 1.33333 NA Intergenic Intergenic -83114 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 193.666-6 chr3 6236502 6236693 + 1.33333 NA Intergenic Intergenic 568852 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 194.666-5 chr15 80173450 80173721 + 1.33333 NA intron (NM_000137, intron 9 of 13) intron (NM_000137, intron 9 of 13) 20586 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 193.667-40 chr4 66946733 66947075 + 1.33333 NA Intergenic Intergenic 475096 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 339.166-3 chr3 112391012 112391688 + 1.33333 NA Intergenic Intergenic 58194 NM_001365851 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 354.166 chr2 45148895 45149241 + 1.33333 NA Intergenic L1PB1|LINE|L1 105873 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 326.333-6 chr22 22741018 22741456 + 1.33333 NA Intergenic L1MA1|LINE|L1 -81539 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 254.333-34 chr8 122922694 122922902 + 1.33333 NA intron (NM_001362797, intron 3 of 4) MIRb|SINE|MIR 102974 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 242.833 chr1 4942133 4942625 + 1.33333 NA Intergenic Intergenic 287770 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 266-2 chr1 95408496 95408757 + 1.33333 NA Intergenic Intergenic -56519 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 248-37 chr8 62980472 62980800 + 1.33333 NA non-coding (NR_027378, exon 1 of 1) non-coding (NR_027378, exon 1 of 1) 2775 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 180.666-2 chr11 97618728 97618885 + 1.33333 NA Intergenic Intergenic 1110381 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 269.501-5 chr7 98913943 98914450 + 1.33333 NA intron (NM_003496, intron 18 of 70) AluJo|SINE|Alu 32499 NR_132754 106633801 NR_132754 SCARNA28 ZL1 small Cajal body-specific RNA 28 ncRNA 316.666-2 chr18 4398623 4399011 + 1.33333 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 56449 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 520.499 chr3 48088688 48089281 + 1.33333 NA promoter-TSS (NM_030885) promoter-TSS (NM_030885) -136 NM_001134364 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 336.999 chr5 35696051 35696322 + 1.33333 NA intron (NM_024867, intron 14 of 36) intron (NM_024867, intron 14 of 36) 78323 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 385.333-10 chr5 129435452 129435881 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -24632 NM_133638 171019 Hs.23751 NM_133638 ENSG00000145808 ADAMTS19 - ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding 298.333-9 chr16 68329042 68329308 + 1.33333 NA intron (NR_147058, intron 6 of 18) intron (NR_147058, intron 6 of 18) 18061 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 199-19 chr17 79704664 79705033 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR 2401 NR_039893 100616170 NR_039893 ENSG00000266665 MIR4739 mir-4739 microRNA 4739 ncRNA 268-18 chr17 27547031 27547417 + 1.33333 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 75260 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 312.666 chr1 116198870 116199250 + 1.33333 NA Intergenic Intergenic 87305 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 326-7 chr2 149191195 149191738 + 1.33333 NA intron (NM_001317002, intron 4 of 7) L1ME4b|LINE|L1 73292 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 248.666-4 chr2 188746239 188746483 + 1.33333 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 43762 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 319.666-4 chr5 59818652 59819036 + 1.33333 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -49996 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 211-28 chr2 143867516 143867780 + 1.33333 NA Intergenic L1ME3D|LINE|L1 -69419 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 176.666 chr1 87996625 87996884 + 1.33333 NA Intergenic MLT2B4|LTR|ERVL -625099 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 271.666-5 chr17 70625362 70625723 + 1.33333 NA Intergenic LTR78|LTR|ERV1 456007 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 248.833-14 chr2 129436973 129437272 + 1.33333 NA Intergenic Intergenic -163231 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 264.833-7 chr13 83263614 83263882 + 1.33333 NA Intergenic THE1C-int|LTR|ERVL-MaLR 618645 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 183.166 chr12 6358694 6358951 + 1.33333 NA intron (NM_001038, intron 4 of 12) AluJo|SINE|Alu -16338 NM_001270987 4055 Hs.1116 NM_002342 ENSG00000111321 LTBR D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 lymphotoxin beta receptor protein-coding 248.499-2 chr17 63092601 63092843 + 1.33333 NA intron (NM_025185, intron 3 of 25) MSTA|LTR|ERVL-MaLR 126487 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 370.333-9 chr3 132822035 132822387 + 1.33333 NA intron (NR_002811, intron 8 of 10) intron (NR_002811, intron 8 of 10) -99752 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 276-5 chr10 66598820 66599206 + 1.33333 NA intron (NM_001127384, intron 10 of 17) L1M3c|LINE|L1 -327023 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 258.833-11 chr3 182296566 182296856 + 1.33333 NA Intergenic Intergenic 189651 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 334.167-5 chr21 35826862 35827663 + 1.33333 NA Intergenic Intergenic -59183 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 362.5-2 chr1 227316933 227317352 + 1.33333 NA exon (NM_001366010, exon 1 of 35) exon (NM_001366010, exon 1 of 35) 1350 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 266.666 chr1 200435057 200435373 + 1.33333 NA Intergenic Intergenic -25179 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 209.667-13 chr15 61001078 61001695 + 1.33333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 227916 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 278.166 chr1 201877976 201878265 + 1.33333 NA 3' UTR (NM_018085, exon 24 of 24) 3' UTR (NM_018085, exon 24 of 24) -10549 NR_030775 149345 Hs.632471 NM_198149 ENSG00000198892 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 296.667-8 chr15 84631023 84631476 + 1.33333 NA promoter-TSS (NR_003654) promoter-TSS (NR_003654) -211 NR_004859 54581 Hs.658114 NM_022050 SCAND2P SCAND2 SCAN domain containing 2 pseudogene pseudo 237-14 chr15 77465824 77466082 + 1.33333 NA intron (NM_001304505, intron 3 of 9) intron (NM_001304505, intron 3 of 9) 45065 NM_001304504 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 177.167-29 chr8 28532763 28533272 + 1.33333 NA intron (NM_017412, intron 5 of 7) L1ME3Cz|LINE|L1 -27835 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 212.666 chr1 209639736 209639906 + 1.33333 NA intron (NM_001017402, intron 2 of 21) intron (NM_001017402, intron 2 of 21) 11513 NM_001017402 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 170.667-39 chr6 28324929 28325166 + 1.33333 NA 3' UTR (NM_001243241, exon 4 of 4) 3' UTR (NM_001243241, exon 4 of 4) 11087 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 267.666 chr14 31512822 31513209 + 1.33333 NA Intergenic Intergenic -24976 NM_001197184 2856 Hs.727479 NM_001197184 ENSG00000214943 GPR33 - G protein-coupled receptor 33 (gene/pseudogene) protein-coding 197.833-24 chr4 39075647 39075899 + 1.33333 NA intron (NM_199039, intron 1 of 9) intron (NM_199039, intron 1 of 9) 13541 NM_015990 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 306.5-17 chr6 135396319 135396794 + 1.33333 NA intron (NM_017651, intron 21 of 27) intron (NM_017651, intron 21 of 27) 101184 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 291.666-2 chr5 38044002 38044353 + 1.33333 NA intron (NR_147009, intron 2 of 2) L1ME3|LINE|L1 18480 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 384.333-5 chr3 128170677 128171170 + 1.33333 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) -17009 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 351.5-5 chr14 60091987 60092465 + 1.33333 NA 5' UTR (NM_022495, exon 1 of 10) 5' UTR (NM_022495, exon 1 of 10) 303 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 284.333-15 chr4 132615617 132615891 + 1.33333 NA intron (NR_126401, intron 1 of 3) intron (NR_126401, intron 1 of 3) 24665 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 225.333-31 chr5 169559329 169559620 + 1.33333 NA Intergenic Intergenic -24299 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 183-29 chr2 138633966 138634128 + 1.33333 NA Intergenic L1ME1|LINE|L1 132277 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 302-14 chr3 52602968 52603303 + 1.33333 NA intron (NM_001366074, intron 20 of 30) intron (NM_001366074, intron 20 of 30) 66530 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 352.666-5 chr2 101822999 101823549 + 1.33333 NA intron (NM_145686, intron 3 of 30) intron (NM_145686, intron 3 of 30) 125567 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 194.5-2 chr1 77126950 77127152 + 1.33333 NA intron (NM_005482, intron 9 of 10) intron (NM_005482, intron 9 of 10) 66908 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 370.833-6 chr4 96256848 96257391 + 1.33333 NA Intergenic LTR40a|LTR|ERVL -53584 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 224-52 chrX 43433152 43433475 + 1.33333 NA Intergenic MSTD|LTR|ERVL-MaLR -221594 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 189-4 chr10 4778156 4778342 + 1.33333 NA Intergenic L1MC3|LINE|L1 -47928 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 276.5-6 chr18 31736550 31736960 + 1.33333 NA Intergenic Intergenic 24125 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 217.666-5 chr8 85960824 85961026 + 1.33333 NA Intergenic Intergenic 108743 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 344.833-8 chr5 39744732 39745305 + 1.33333 NA Intergenic Charlie2b|DNA|hAT-Charlie 224587 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 170-17 chr14 59206966 59207250 + 1.33333 NA intron (NM_001270520, intron 1 of 24) LTR37B|LTR|ERV1 18441 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 339.666-4 chr8 95619760 95620056 + 1.33333 NA intron (NR_038205, intron 2 of 2) MLT1N2|LTR|ERVL-MaLR 328440 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 200-37 chr6 112120677 112120838 + 1.33333 NA intron (NM_001105206, intron 32 of 38) intron (NM_001105206, intron 32 of 38) 33166 NM_001033564 619208 Hs.591340 NM_001033564 ENSG00000203778 FAM229B C6orf225 family with sequence similarity 229 member B protein-coding 285.001-2 chr8 30560698 30561126 + 1.33333 NA intron (NM_001008710, intron 7 of 8) intron (NM_001008710, intron 7 of 8) -77668 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 202.666-8 chr5 4322320 4322533 + 1.33333 NA Intergenic L1MA6|LINE|L1 -451055 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 261-21 chr6 15844427 15844749 + 1.33333 NA Intergenic MER121B|DNA|hAT? -181530 NM_183040 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 250-6 chr15 67315797 67316103 + 1.33333 NA intron (NM_001322475, intron 3 of 17) intron (NM_001322475, intron 3 of 17) -60752 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 447.333-3 chr4 150010277 150010941 + 1.33333 NA Intergenic Intergenic -67836 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 177.333-8 chr14 43835300 43835521 + 1.33333 NA Intergenic Intergenic 671873 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 508.666-7 chr6 62214485 62215152 + 1.33333 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 71407 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 227.333-18 chr19 48999672 48999959 + 1.33333 NA intron (NM_006666, intron 2 of 14) MIRb|SINE|MIR 5928 NM_001321190 10856 Hs.515846 NM_006666 ENSG00000183207 RUVBL2 CGI-46|ECP-51|ECP51|INO80J|REPTIN|RVB2|TAP54-beta|TIH2|TIP48|TIP49B RuvB like AAA ATPase 2 protein-coding 215.5-25 chr7 76259172 76259477 + 1.33333 NA intron (NM_001110199, intron 3 of 14) AluJr|SINE|Alu -43349 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 229.166-2 chr7 23613833 23614070 + 1.33333 NA intron (NM_138771, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 16569 NM_138771 90693 Hs.232296 NM_138771 ENSG00000169193 CCDC126 - coiled-coil domain containing 126 protein-coding 238.333-41 chr7 120775685 120775940 + 1.33333 NA Intergenic Intergenic 82332 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 294-13 chr3 149480636 149481051 + 1.33333 NA intron (NM_004617, intron 2 of 4) intron (NM_004617, intron 2 of 4) 6146 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 419.667-2 chr11 121655648 121656209 + 1.33333 NA Intergenic Intergenic 203614 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 182.166-2 chrX 67555517 67555755 + 1.33333 NA intron (NM_001348064, intron 1 of 2) intron (NM_001348064, intron 1 of 2) 11013 NM_001348064 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 323.667-2 chr1 11645424 11646134 + 1.33333 NA Intergenic Intergenic -8628 NM_001304791 93611 Hs.556006 NM_033182 ENSG00000132879 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 409.833-7 chr5 83925583 83926003 + 1.33333 NA Intergenic Intergenic -204938 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 202.833-26 chr7 97128546 97129063 + 1.33333 NA intron (NM_020186, intron 1 of 1) intron (NM_020186, intron 1 of 1) 12211 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 170-18 chr14 86321753 86321954 + 1.33333 NA Intergenic Intergenic 387175 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 252 chr1 16082299 16082708 + 1.33333 NA Intergenic Intergenic -8852 NM_182623 348487 Hs.126825 NM_182623 ENSG00000185519 FAM131C C1orf117 family with sequence similarity 131 member C protein-coding 230 chr1 59415095 59415424 + 1.33333 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) -100371 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 482.666-2 chr1 109499752 109500434 + 1.33333 NA 3' UTR (NM_001134402, exon 2 of 2) 3' UTR (NM_001134402, exon 2 of 2) 5999 NM_001134404 284613 Hs.514682 NM_182580 ENSG00000174151 CYB561D1 - cytochrome b561 family member D1 protein-coding 274-3 chr1 199797438 199797790 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -230096 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 375.999-3 chr18 67736747 67737137 + 1.33333 NA intron (NR_033921, intron 1 of 4) (TC)n|Simple_repeat|Simple_repeat 77880 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 232.666-7 chr2 125867044 125867321 + 1.33333 NA Intergenic Intergenic 250803 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 212.333-23 chr4 129342789 129343375 + 1.33333 NA Intergenic Intergenic 246930 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 198.667-47 chr9 78770321 78770556 + 1.33333 NA Intergenic Intergenic 375228 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 382-6 chr18 9452667 9453026 + 1.33333 NA Intergenic Intergenic -22667 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 384.999 chr11 93612270 93612670 + 1.33333 NA Intergenic Intergenic -49212 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 198.333-31 chr22 32079217 32079396 + 1.33333 NA intron (NM_000343, intron 5 of 14) intron (NM_000343, intron 5 of 14) 20136 NM_001256314 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 192.333-12 chr12 105297402 105297624 + 1.33333 NA Intergenic MLT1K|LTR|ERVL-MaLR 29504 NR_131986 105369954 Hs.368938 NR_131986 ENSG00000257642 KCCAT198 - renal clear cell carcinoma-associated transcript 198 ncRNA 212.667-52 chrX 11100740 11100998 + 1.33333 NA Intergenic Intergenic -10463 NM_001171991 3052 Hs.211571 NM_005333 ENSG00000004961 HCCS CCHL|LSDMCA1|MCOPS7|MLS holocytochrome c synthase protein-coding 479.833-2 chr2 239401240 239401755 + 1.33333 NA promoter-TSS (NM_006037) promoter-TSS (NM_006037) 61 NR_135575 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 732.334 chr1 40691042 40692195 + 1.33333 NA promoter-TSS (NM_014223) promoter-TSS (NM_014223) -86 NM_001142589 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 169.333-64 chr8 131669410 131669588 + 1.33333 NA Intergenic Intergenic -234594 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 186.166 chr1 85407331 85407593 + 1.33333 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) -2956 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 260.667-30 chr2 157492237 157492689 + 1.33333 NA Intergenic Intergenic -48374 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 390-5 chr17 75055866 75056643 + 1.33333 NA intron (NM_015353, intron 3 of 5) intron (NM_015353, intron 3 of 5) 9029 NM_015353 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 215.166-3 chr9 97704213 97704482 + 1.33333 NA intron (NR_147055, intron 10 of 10) intron (NR_147055, intron 10 of 10) -6938 NR_149091 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 188.166-2 chr14 64788807 64788988 + 1.33333 NA intron (NM_001024858, intron 14 of 34) intron (NM_001024858, intron 14 of 34) -3211 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 165.167-4 chr10 126424856 126425231 + 1.33333 NA promoter-TSS (NR_148989) promoter-TSS (NR_148989) -887 NR_148989 728158 Hs.646701 NR_148989 LOC728158 - uncharacterized LOC728158 ncRNA 211.333-27 chr3 100266434 100266749 + 1.33333 NA intron (NM_001199198, intron 1 of 18) intron (NM_001199198, intron 1 of 18) 5599 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 250.166-3 chr3 59143386 59143646 + 1.33333 NA Intergenic Intergenic -93484 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 222.5-6 chr1 216352169 216352360 + 1.33333 NA intron (NM_206933, intron 4 of 71) L2a|LINE|L2 71132 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 222.666 chr1 189969704 189969894 + 1.33333 NA Intergenic Intergenic 506211 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 206-15 chr14 58730045 58730373 + 1.33333 NA Intergenic Intergenic 91372 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 268-24 chr2 184106061 184106505 + 1.33333 NA Intergenic L2|LINE|L2 -272692 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 490-5 chr9 131373614 131374271 + 1.33333 NA Intergenic AluY|SINE|Alu -56148 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 227.333-15 chr16 64893126 64893451 + 1.33333 NA Intergenic Intergenic 228775 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 302.5-12 chr5 149894759 149895215 + 1.33333 NA intron (NM_000440, intron 13 of 21) intron (NM_000440, intron 13 of 21) 37990 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 394.334-3 chr12 7603272 7603659 + 1.33333 NA Intergenic HERVP71A-int|LTR|ERV1 62443 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 303.833-11 chr6 85643895 85644238 + 1.33333 NA Intergenic CpG-23804 -1144 NM_001159673 10492 Hs.571177 NM_006372 ENSG00000135316 SYNCRIP GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q synaptotagmin binding cytoplasmic RNA interacting protein protein-coding 422.334-2 chr17 51457090 51457495 + 1.33333 NA Intergenic Intergenic 21865 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 417.167-5 chr4 31816822 31817402 + 1.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -180267 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 278.666-7 chr2 58462939 58463307 + 1.33333 NA Intergenic Intergenic -57630 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 315.999 chr2 123255127 123255391 + 1.33333 NA Intergenic L1MCb|LINE|L1 -181778 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 213-28 chr21 29876979 29877181 + 1.33333 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 62916 NM_001330993 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 241.166-4 chr2 167057107 167057310 + 1.33333 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 83747 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 319-17 chr8 13525345 13525760 + 1.33333 NA intron (NM_001348082, intron 1 of 16) L1ME1|LINE|L1 -10701 NM_024767 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 246.333-8 chr11 74438825 74439160 + 1.33333 NA Intergenic MLT1H2|LTR|ERVL-MaLR 28563 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 375.333-5 chr15 73525087 73525600 + 1.33333 NA intron (NM_001348772, intron 2 of 4) L1ME1|LINE|L1 44200 NR_103844 101241892 Hs.656678 NR_103844 ENSG00000281183 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 ncRNA 220.833-12 chr16 9147610 9147961 + 1.33333 NA Intergenic MER1A|DNA|hAT-Charlie 56141 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 265-16 chr3 197960168 197960597 + 1.33333 NA promoter-TSS (NM_032263) promoter-TSS (NM_032263) 165 NR_026786 89782 Hs.518540 NM_033029 ENSG00000185621 LMLN GP63|INV|IX14|LMNL1|MSP leishmanolysin like peptidase protein-coding 334.166-3 chr2 144483403 144483722 + 1.33333 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -36052 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 296.333-19 chr8 107776030 107776436 + 1.33333 NA Intergenic Intergenic -278315 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 208.666-5 chr11 104747717 104747917 + 1.33333 NA Intergenic Intergenic -138515 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 194-36 chr6 121355047 121355259 + 1.33333 NA Intergenic Intergenic -20424 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 221.833-17 chr5 166068902 166069100 + 1.33333 NA Intergenic Intergenic 857369 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 421.166 chr2 56515486 56515971 + 1.33333 NA Intergenic MIRb|SINE|MIR -329958 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 189.333-43 chr9 37421074 37421271 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -1524 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 295.666-3 chr10 101292676 101293012 + 1.33333 NA Intergenic Intergenic -29294 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LINC02681 - long intergenic non-protein coding RNA 2681 ncRNA 280.333-10 chr14 51953771 51954101 + 1.33333 NA intron (NM_001243773, intron 3 of 3) intron (NM_001243773, intron 3 of 3) -35365 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 326-16 chr8 61023458 61024073 + 1.33333 NA Intergenic Intergenic -56017 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 537.333 chr10 27223938 27224429 + 1.33333 NA intron (NM_001271512, intron 3 of 11) AluJo|SINE|Alu 16303 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 522.167-4 chr2 174344801 174345659 + 1.33333 NA Intergenic Intergenic 10276 NM_001145250 100131390 NM_001145250 ENSG00000217236 SP9 ZNF990 Sp9 transcription factor protein-coding 263.666-4 chr3 165340586 165340965 + 1.33333 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 133815 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 163.5-13 chr13 31148827 31148994 + 1.33333 NA intron (NM_006644, intron 8 of 17) intron (NM_006644, intron 8 of 17) 12994 NM_006644 10808 Hs.743267 NM_006644 ENSG00000120694 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock protein family H (Hsp110) member 1 protein-coding 248.333-6 chr10 33274417 33274776 + 1.33333 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 60071 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 171.5-9 chr11 33166167 33166470 + 1.33333 NA intron (NR_034027, intron 1 of 3) intron (NR_034027, intron 1 of 3) 4661 NR_034027 338739 Hs.423476 NR_034027 ENSG00000247151 CSTF3-DT CSTF3-AS1 CSTF3 divergent transcript ncRNA 228.833 chr1 156800264 156800458 + 1.33333 NA intron (NM_005973, intron 6 of 6) intron (NM_005973, intron 6 of 6) -15389 NM_001007792 4914 Hs.406293 NM_002529 ENSG00000198400 NTRK1 MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA neurotrophic receptor tyrosine kinase 1 protein-coding 222-31 chrX 152312452 152312694 + 1.33333 NA intron (NM_000808, intron 3 of 9) L1PA14|LINE|L1 79726 NR_029521 406897 NR_029521 ENSG00000207957 MIR105-1 MIRN105-1|mir-105-1 microRNA 105-1 ncRNA 206.5-33 chr2 118357127 118357362 + 1.33333 NA Intergenic L1MB4|LINE|L1 -170858 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 180-44 chr3 14549356 14549754 + 1.33333 NA Intergenic Intergenic -9213 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 305.999-2 chr14 82399261 82399572 + 1.33333 NA Intergenic Intergenic -243216 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 248.333-30 chr6 125946410 125946665 + 1.33333 NA Intergenic L2|LINE|L2 -10233 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 498-7 chr6 89432633 89433194 + 1.33333 NA promoter-TSS (NM_001242813) promoter-TSS (NM_001242813) -239 NM_001242809 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 264.666-4 chr10 94042493 94042723 + 1.33333 NA intron (NM_001288989, intron 2 of 32) intron (NM_001288989, intron 2 of 32) -46418 NM_001165979 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 169.333-44 chr3 150220591 150220777 + 1.33333 NA Intergenic Intergenic -17835 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 325.667-9 chr4 59693959 59694422 + 1.33333 NA Intergenic Intergenic 680617 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 265-11 chr20 52552435 52552850 + 1.33333 NA Intergenic Intergenic -68196 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 287.666-3 chr9 29016173 29016413 + 1.33333 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -127338 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 306-12 chr3 86493535 86493907 + 1.33333 NA intron (NR_135563, intron 1 of 1) MER5A|DNA|hAT-Charlie 11778 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 417.5-10 chr20 59921169 59921611 + 1.33333 NA exon (NM_014258, exon 4 of 45) exon (NM_014258, exon 4 of 45) 12247 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 243.333-12 chr11 121813804 121814108 + 1.33333 NA Intergenic Intergenic 285888 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 265.166-5 chr6 75728251 75728521 + 1.33333 NA Intergenic Intergenic -20853 NR_160538 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 234.333-6 chr11 15122952 15123252 + 1.33333 NA intron (NM_001042536, intron 1 of 12) L2b|LINE|L2 8179 NM_001042536 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 337.167-6 chr14 90697751 90698386 + 1.33333 NA non-coding (NR_135190, exon 2 of 2) non-coding (NR_135190, exon 2 of 2) 735 NR_135190 105370622 Hs.662373 NR_135190 ENSG00000258716 LOC105370622 - uncharacterized LOC105370622 ncRNA 330.667-10 chr3 147765474 147765898 + 1.33333 NA Intergenic Intergenic -312473 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 284.666 chr18 3305845 3306237 + 1.33333 NA Intergenic Intergenic 43322 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 189.333-25 chr3 53160591 53160735 + 1.33333 NA promoter-TSS (NM_001354680) promoter-TSS (NM_001354680) -546 NM_212539 5580 Hs.155342 NM_006254 ENSG00000163932 PRKCD ALPS3|CVID9|MAY1|PKCD|nPKC-delta protein kinase C delta protein-coding 334.999-2 chr3 106559704 106560214 + 1.33333 NA Intergenic L1ME4a|LINE|L1 680679 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 202-4 chr1 193369217 193369399 + 1.33333 NA Intergenic MER77B|LTR|ERVL 64563 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 194.833-4 chr11 90865058 90865215 + 1.33333 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) 4066 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 369.999 chr14 50313421 50313831 + 1.33333 NA intron (NM_001003805, intron 1 of 3) L1MD2|LINE|L1 1302 NM_001003803 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 216.666-6 chr3 74019695 74019930 + 1.33333 NA Intergenic L2a|LINE|L2 210568 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 184.667-23 chr17 30340518 30340717 + 1.33333 NA Intergenic Intergenic -6560 NM_001319942 388364 Hs.371005 NM_206832 ENSG00000182271 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 221.334-2 chr1 190442525 190442834 + 1.33333 NA intron (NM_199051, intron 2 of 7) (GT)n|Simple_repeat|Simple_repeat 33331 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 222.333-21 chr20 47342945 47343239 + 1.33333 NA intron (NM_001281774, intron 3 of 23) AluJo|SINE|Alu 8805 NM_001363741 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 174-7 chr11 9787818 9788094 + 1.33333 NA intron (NM_030962, intron 35 of 39) intron (NM_030962, intron 35 of 39) -28423 NR_033972 440028 Hs.677541 NR_033972 ENSG00000245522 LINC02709 - long intergenic non-protein coding RNA 2709 ncRNA 385.667-3 chr14 38218692 38219125 + 1.33333 NA Intergenic Intergenic 11004 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 293.999-5 chr6 79752729 79753005 + 1.33333 NA Intergenic Zaphod3|DNA|hAT-Tip100 59379 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 250.667-3 chr1 215792972 215793544 + 1.33333 NA intron (NM_206933, intron 50 of 71) intron (NM_206933, intron 50 of 71) 225954 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 263.666-5 chr4 61769947 61770245 + 1.33333 NA intron (NM_001371343, intron 8 of 23) MER31-int|LTR|ERV1 391669 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 253.166-6 chr3 186568782 186569099 + 1.33333 NA intron (NM_001134415, intron 1 of 7) L2b|LINE|L2 1378 NM_001286749 55171 Hs.518469 NM_018138 ENSG00000113838 TBCCD1 - TBCC domain containing 1 protein-coding 457.166-3 chr20 59428568 59429195 + 1.33333 NA Intergenic L2b|LINE|L2 128270 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 243.167-10 chr2 103161607 103161928 + 1.33333 NA Intergenic Intergenic -177338 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 216.833-9 chr16 30041910 30042188 + 1.33333 NA Intergenic MER106A|DNA|hAT-Charlie -5519 NM_001352173 83723 Hs.558560 NM_031478 ENSG00000149926 TLCD3B FAM57B|FP1188 TLC domain containing 3B protein-coding 382-12 chr8 141955320 141955767 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -169230 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 222.667-36 chr6 137349525 137349797 + 1.33333 NA Intergenic Intergenic -130231 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 285 chr1 85692907 85693332 + 1.33333 NA intron (NM_017953, intron 5 of 9) intron (NM_017953, intron 5 of 9) 15314 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 323.667-10 chr12 13196184 13196964 + 1.33333 NA promoter-TSS (NM_001423) promoter-TSS (NM_001423) -152 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 207.5-3 chr1 116360764 116361064 + 1.33333 NA Intergenic Intergenic -12330 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 468.333-3 chr5 7391183 7391972 + 1.33333 NA Intergenic Intergenic -4561 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 197.833-22 chr20 6535003 6535276 + 1.33333 NA Intergenic Intergenic 108407 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 266.333-15 chr5 161966490 161967049 + 1.33333 NA intron (NR_126372, intron 1 of 2) intron (NR_126372, intron 1 of 2) 34427 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 390.5-8 chr4 112789834 112790265 + 1.33333 NA intron (NM_001354269, intron 1 of 43) L1M3|LINE|L1 -27948 NM_001354254 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 188.167-17 chr19 17267124 17267388 + 1.33333 NA promoter-TSS (NM_014173) promoter-TSS (NM_014173) -120 NM_001288756 29086 Hs.190722 NM_014173 ENSG00000105393 BABAM1 C19orf62|HSPC142|MERIT40|NBA1 BRISC and BRCA1 A complex member 1 protein-coding 213-46 chr8 138292860 138293042 + 1.33333 NA intron (NM_015912, intron 3 of 19) L1PB3|LINE|L1 204310 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 175-43 chr3 169041469 169041847 + 1.33333 NA Intergenic Intergenic 103865 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 230.5-28 chr5 98275843 98276393 + 1.33333 NA Intergenic Intergenic -114879 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 206.333-6 chr1 193738030 193738312 + 1.33333 NA Intergenic Intergenic 433426 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 357-16 chr5 171958733 171959086 + 1.33333 NA intron (NM_012300, intron 1 of 12) MER94|DNA|hAT-Blackjack 47964 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 339.5-4 chr11 127843487 127844066 + 1.33333 NA Intergenic HAL1|LINE|L1 -364990 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 242.666-13 chr20 45303569 45303868 + 1.33333 NA intron (NM_003833, intron 4 of 10) intron (NM_003833, intron 4 of 10) -3122 NM_001281448 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 192-32 chr5 103491391 103491636 + 1.33333 NA Intergenic L1M5|LINE|L1 50472 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 307.333-15 chr7 53596927 53597245 + 1.33333 NA Intergenic Intergenic 214845 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 352.333-7 chr17 32339811 32340319 + 1.33333 NA intron (NM_022344, intron 2 of 9) intron (NM_022344, intron 2 of 9) 2108 NM_022344 64149 Hs.655257 NM_022344 ENSG00000108666 C17orf75 NJMU-R1|SRI2 chromosome 17 open reading frame 75 protein-coding 213.166-6 chr6 155344295 155344719 + 1.33333 NA Intergenic L1PREC2|LINE|L1 -30023 NR_146725 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 382.332-2 chr8 16295187 16295655 + 1.33333 NA Intergenic Intergenic -102630 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 332-18 chr3 10181354 10181807 + 1.33333 NA intron (NM_001570, intron 2 of 12) AluSx|SINE|Alu 16661 NM_001570 3656 Hs.449207 NM_001570 ENSG00000134070 IRAK2 IRAK-2 interleukin 1 receptor associated kinase 2 protein-coding 317.833-5 chr17 62787429 62787781 + 1.33333 NA intron (NM_001288780, intron 4 of 10) MIR|SINE|MIR 19035 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 303.333-10 chr21 43609828 43610094 + 1.33333 NA promoter-TSS (NR_106718) promoter-TSS (NR_106718) 28 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 311.167-5 chr12 39683067 39683486 + 1.33333 NA intron (NM_001031748, intron 8 of 12) intron (NM_001031748, intron 8 of 12) 57093 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 261.666-3 chr1 225962482 225962798 + 1.33333 NA Intergenic Intergenic -21148 NM_001172425 7044 Hs.520187 NM_003240 ENSG00000143768 LEFTY2 EBAF|LEFTA|LEFTYA|TGFB4 left-right determination factor 2 protein-coding 248.5-27 chr4 102262964 102263644 + 1.33333 NA intron (NM_022154, intron 7 of 7) Tigger1|DNA|TcMar-Tigger 61008 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 191.333-22 chr2 184644610 184644851 + 1.33333 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 46201 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 413.332 chr11 63938490 63938847 + 1.33333 NA promoter-TSS (NM_001300800) promoter-TSS (NM_001300800) -334 NM_024771 79829 Hs.523753 NM_024771 ENSG00000110583 NAA40 NAT11|NatD|PATT1|hNatD N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding 369.833-4 chr4 137693122 137693669 + 1.33333 NA Intergenic Intergenic 147664 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 317.833 chr1 209490190 209490629 + 1.33333 NA Intergenic Intergenic 58276 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 256.167-9 chr12 132773926 132774144 + 1.33333 NA intron (NM_005895, intron 23 of 23) intron (NM_005895, intron 23 of 23) -12203 NM_015114 23141 Hs.654628 NM_015114 ENSG00000176915 ANKLE2 KIAA0692|LEMD7|Lem4|MCPH16 ankyrin repeat and LEM domain containing 2 protein-coding 256-8 chr13 27702207 27702471 + 1.33333 NA Intergenic L1MCa|LINE|L1 80447 NM_015972 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 343.167 chr1 211579178 211579654 + 1.33333 NA promoter-TSS (NM_021194) promoter-TSS (NM_021194) -255 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 478 chr12 25500137 25500767 + 1.33333 NA intron (NM_001145729, intron 8 of 8) intron (NM_001145729, intron 8 of 8) 52831 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 192.666-7 chr6 43690828 43691206 + 1.33333 NA Intergenic AluJb|SINE|Alu -3205 NM_001193343 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 298.5-11 chr15 48352612 48353012 + 1.33333 NA Intergenic Intergenic 20615 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 228-16 chr14 78938362 78938577 + 1.33333 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -261513 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 194.667-51 chr7 4775334 4775603 + 1.33333 NA promoter-TSS (NM_014855) promoter-TSS (NM_014855) -155 NM_001364858 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 subunit zeta 1 protein-coding 285-11 chr2 96748908 96749271 + 1.33333 NA Intergenic Intergenic -8997 NM_001322350 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 177.833-4 chr1 236781266 236781533 + 1.33333 NA Intergenic L1MB4|LINE|L1 -13882 NM_001291939 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 205.167-11 chr2 84998230 84998522 + 1.33333 NA intron (NM_020122, intron 1 of 6) AluSq|SINE|Alu 27215 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 224-21 chr18 38656432 38656632 + 1.33333 NA Intergenic Intergenic 965643 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 203.333-26 chr19 27860614 27860851 + 1.33333 NA intron (NR_146734, intron 1 of 7) HSAT4|Satellite|centr -66792 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 237.333-17 chr2 108879748 108880054 + 1.33333 NA intron (NM_001351557, intron 11 of 12) intron (NM_001351557, intron 11 of 12) 93130 NR_147236 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 276.833-11 chr21 17923933 17924251 + 1.33333 NA intron (NM_001204177, intron 1 of 4) intron (NM_001204177, intron 1 of 4) 6752 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 221.666-4 chr15 89485576 89485895 + 1.33333 NA intron (NM_001321041, intron 2 of 10) intron (NM_001321041, intron 2 of 10) 10848 NM_001321041 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 255.166-6 chr8 6423722 6424109 + 1.33333 NA intron (NM_001172574, intron 3 of 7) L1MC|LINE|L1 16762 NM_001322045 79648 Hs.593807 NM_024596 ENSG00000147316 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 287.666 chr10 83697312 83697640 + 1.33333 NA Intergenic MIR|SINE|MIR -20387 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 166.333-49 chr7 34005725 34005862 + 1.33333 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 100254 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 262.666-5 chr3 151469099 151469429 + 1.33333 NA Intergenic L1PA10|LINE|L1 -10555 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 331.333-5 chr17 48321924 48322296 + 1.33333 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 27763 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 438-7 chr6 27115308 27115831 + 1.33333 NA Intergenic AluSx|SINE|Alu 17227 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 226.333-8 chr17 9959538 9960011 + 1.33333 NA promoter-TSS (NM_003644) promoter-TSS (NM_003644) -279 NM_003644 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 421.499 chr14 58663993 58664415 + 1.33333 NA Intergenic Intergenic 25367 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 216.167-23 chr5 24368403 24368704 + 1.33333 NA Intergenic Intergenic 276425 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 335.667-7 chr14 82811603 82812069 + 1.33333 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat 169204 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 266.166-4 chr22 35268518 35268773 + 1.33333 NA intron (NM_001003681, intron 5 of 10) L2b|LINE|L2 11152 NM_001003681 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 247-16 chr16 80472655 80472882 + 1.33333 NA intron (NR_120307, intron 2 of 5) L1ME3A|LINE|L1 -67966 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 372.5-2 chr10 53135971 53136406 + 1.33333 NA Intergenic Intergenic -364488 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 227.166-4 chr14 27725380 27725625 + 1.33333 NA Intergenic Intergenic -52281 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 540.833-2 chr11 61477639 61478401 + 1.33333 NA Intergenic Intergenic -3100 NM_001170753 220004 Hs.729003 NM_145017 ENSG00000162148 PPP1R32 C11orf66|IIIG9 protein phosphatase 1 regulatory subunit 32 protein-coding 203.333-57 chr8 53978587 53978794 + 1.33333 NA non-coding (NR_109901, exon 10 of 12) non-coding (NR_109901, exon 10 of 12) 43758 NR_109901 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 192.333-2 chr1 54386134 54386346 + 1.33333 NA intron (NM_001009955, intron 4 of 16) intron (NM_001009955, intron 4 of 16) 20154 NM_001009955 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 230-19 chr15 38809675 38809947 + 1.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR 113213 NR_160786 182.666-11 chr8 117624581 117624976 + 1.33333 NA Intergenic Intergenic 104065 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 174.333-5 chr10 28546620 28546792 + 1.33333 NA intron (NM_100486, intron 3 of 12) intron (NM_100486, intron 3 of 12) 13588 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 189.667-31 chr3 10701229 10701465 + 1.33333 NA Intergenic Intergenic 62862 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 259.333-24 chr4 32429249 32429498 + 1.33333 NA Intergenic Intergenic 78335 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 305.833-2 chr10 61880944 61881208 + 1.33333 NA Intergenic Intergenic -20623 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 327.666-7 chr5 13000203 13000559 + 1.33333 NA intron (NR_147005, intron 2 of 4) L2|LINE|L2 32505 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 288.833-13 chr5 28027210 28027499 + 1.33333 NA Intergenic L1M1|LINE|L1 260311 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 495.333 chr15 90902103 90902675 + 1.33333 NA promoter-TSS (NR_135503) promoter-TSS (NR_135503) 7 NM_001320977 4122 Hs.116459 NM_006122 ENSG00000196547 MAN2A2 MANA2X mannosidase alpha class 2A member 2 protein-coding 209.166 chr1 51438120 51438401 + 1.33333 NA intron (NM_001981, intron 12 of 24) intron (NM_001981, intron 12 of 24) -16165 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 299.333-13 chr3 100492122 100492456 + 1.33333 NA promoter-TSS (NM_018004) promoter-TSS (NM_018004) -330 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 310.5-16 chr7 11332192 11332565 + 1.33333 NA Intergenic Intergenic 358506 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 373.666-3 chr4 39615979 39616309 + 1.33333 NA intron (NM_001317896, intron 1 of 5) AluSz|SINE|Alu 10977 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 234.5-35 chr7 32507789 32508057 + 1.33333 NA intron (NM_015060, intron 1 of 15) L1ME3A|LINE|L1 12434 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 183-16 chr12 121354646 121354883 + 1.33333 NA promoter-TSS (NM_001137559) promoter-TSS (NM_001137559) -555 NM_001137559 51433 Hs.7101 NM_016237 ENSG00000089053 ANAPC5 APC5 anaphase promoting complex subunit 5 protein-coding 243.166-6 chr2 62356430 62356668 + 1.33333 NA Intergenic AluJb|SINE|Alu 141028 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 373.666-4 chr5 53594028 53594380 + 1.33333 NA intron (NR_134475, intron 2 of 5) L1MC|LINE|L1 33565 NM_001318051 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 236-3 chr11 14977280 14977533 + 1.33333 NA Intergenic Intergenic -5055 NR_125898 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 290.666 chr11 22787559 22788063 + 1.33333 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 41568 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 172.833-8 chr12 61835498 61835746 + 1.33333 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 357217 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 299.5-16 chr4 58120260 58120698 + 1.33333 NA Intergenic Intergenic 415849 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 353.833-7 chr12 42378290 42378629 + 1.33333 NA intron (NM_001364830, intron 4 of 6) intron (NM_001364830, intron 4 of 6) 46661 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 345.5-4 chr12 33983339 33983755 + 1.33333 NA Intergenic Intergenic -38949 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 223.667-15 chr13 74950551 74950817 + 1.33333 NA Intergenic L1MEc|LINE|L1 289697 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 198-21 chr2 65050874 65051078 + 1.33333 NA Intergenic L1MB8|LINE|L1 -5440 NR_134966 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 343.833-8 chr22 48913947 48914470 + 1.33333 NA Intergenic L1ME2|LINE|L1 47438 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 202.667-5 chr12 43491127 43491425 + 1.33333 NA intron (NM_025003, intron 6 of 38) Tigger3a|DNA|TcMar-Tigger 60927 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 580.666 chr12 6553808 6554611 + 1.33333 NA intron (NR_036467, intron 1 of 9) intron (NR_036467, intron 1 of 9) 1833 NR_036467 25900 Hs.15243 NM_015438 ENSG00000010295 IFFO1 HOM-TES-103|IFFO intermediate filament family orphan 1 protein-coding 238.666-3 chr1 216298349 216298612 + 1.33333 NA intron (NM_206933, intron 9 of 71) intron (NM_206933, intron 9 of 71) 124916 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 201.166 chr17 32395941 32396133 + 1.33333 NA Intergenic Intergenic 45899 NM_001098507 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 210.666-5 chr6 129520903 129521083 + 1.33333 NA Intergenic AluSx1|SINE|Alu 189184 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 220.833-27 chr8 117668347 117668566 + 1.33333 NA Intergenic L1M5|LINE|L1 147743 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 258.667 chr10 65042040 65042266 + 1.33333 NA Intergenic L1MA3|LINE|L1 -117635 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 307.834-10 chr7 5192583 5193061 + 1.33333 NA intron (NM_016003, intron 1 of 11) intron (NM_016003, intron 1 of 11) 2589 NM_001278299 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 318.333-7 chr3 94259204 94259553 + 1.33333 NA Intergenic LTR78|LTR|ERV1 196317 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 181.667-24 chr2 103208424 103208611 + 1.33333 NA Intergenic Intergenic -224088 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 181.333-8 chr15 75204394 75204611 + 1.33333 NA intron (NM_015492, intron 1 of 2) AluSz|SINE|Alu 2620 NM_015492 56905 Hs.17936 NM_015492 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 235.667-3 chr1 241043120 241043509 + 1.33333 NA intron (NM_001350116, intron 3 of 16) L1M6|LINE|L1 -88958 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 322.333-6 chr16 88569728 88570265 + 1.33333 NA promoter-TSS (NM_144604) promoter-TSS (NM_144604) -407 NM_001294340 124245 Hs.93670 NM_144604 ENSG00000158545 ZC3H18 NHN1 zinc finger CCCH-type containing 18 protein-coding 229.167 chr1 35651640 35651973 + 1.33333 NA Intergenic MamGypLTR1a|LTR|Gypsy -10280 NM_001199779 5690 Hs.471441 NM_002794 ENSG00000126067 PSMB2 HC7-I proteasome subunit beta 2 protein-coding 345.667-9 chr6 118284539 118284965 + 1.33333 NA intron (NM_001029858, intron 6 of 7) intron (NM_001029858, intron 6 of 7) 198849 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 226-22 chr2 8108707 8108914 + 1.33333 NA intron (NR_034135, intron 7 of 8) Arthur1B|DNA|hAT-Tip100 -131996 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 240.666-13 chr6 142146855 142147073 + 1.33333 NA promoter-TSS (NM_001286372) promoter-TSS (NM_001286372) 158 NM_001324308 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 396.666 chr16 86060403 86060855 + 1.33333 NA Intergenic Intergenic -135552 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 443.5-3 chr12 50734438 50735205 + 1.33333 NA intron (NM_173602, intron 33 of 37) MER20|DNA|hAT-Charlie -29280 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 500.833-2 chr7 30940078 30940984 + 1.33333 NA Intergenic L1MC4|LINE|L1 -23422 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 326.333-8 chr6 57105359 57105638 + 1.33333 NA 3' UTR (NM_001257273, exon 4 of 4) 3' UTR (NM_001257273, exon 4 of 4) 15310 NM_001031623 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 242-7 chr12 47350083 47350403 + 1.33333 NA Intergenic MIRb|SINE|MIR 14026 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 190.667-17 chr12 124992781 124993031 + 1.33333 NA promoter-TSS (NM_080626) promoter-TSS (NM_080626) -739 NM_080626 140707 Hs.596464 NM_080626 ENSG00000184992 BRI3BP BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19 BRI3 binding protein protein-coding 246-11 chr14 87411202 87411556 + 1.33333 NA Intergenic Intergenic 243915 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 383.5-5 chr21 39136333 39136986 + 1.33333 NA Intergenic Intergenic 46792 NM_003720 8624 Hs.473838 NM_003720 ENSG00000183527 PSMG1 C21LRP|DSCR2|LRPC21|PAC-1|PAC1 proteasome assembly chaperone 1 protein-coding 180-12 chr11 62742053 62742219 + 1.33333 NA Intergenic Intergenic 12024 NM_001370809 79842 Hs.147554 NM_024784 ENSG00000185670 ZBTB3 - zinc finger and BTB domain containing 3 protein-coding 179.667-6 chr12 81692651 81692909 + 1.33333 NA intron (NM_003625, intron 3 of 32) intron (NM_003625, intron 3 of 32) 65727 NM_001220475 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 275.833-3 chr1 224503457 224503994 + 1.33333 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 68876 NM_001322304 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 303.5-2 chr12 50546231 50546504 + 1.33333 NA intron (NM_173602, intron 1 of 37) L1PA16|LINE|L1 41382 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 355.832 chr17 43054375 43054641 + 1.33333 NA intron (NR_027676, intron 19 of 22) AluJb|SINE|Alu 29277 NM_005440 8153 Hs.603111 NM_005440 ENSG00000108830 RND2 ARHN|RHO7|RhoN Rho family GTPase 2 protein-coding 202.666-3 chr10 75139477 75139651 + 1.33333 NA intron (NM_144660, intron 1 of 4) L1ME4a|LINE|L1 27908 NM_144660 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 335.5-6 chr5 37556020 37556486 + 1.33333 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 176935 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 175.667-12 chr12 15365186 15365595 + 1.33333 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 42882 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 204-34 chr6 33689097 33689366 + 1.33333 NA intron (NM_002224, intron 49 of 57) intron (NM_002224, intron 49 of 57) -8897 NR_037498 100500873 NR_037498 ENSG00000266509 MIR3934 - microRNA 3934 ncRNA 178.5-36 chr7 21428966 21429124 + 1.33333 NA TTS (NR_137166) TTS (NR_137166) 962 NM_003112 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 188.5-5 chr10 17348791 17349399 + 1.33333 NA intron (NM_001004470, intron 4 of 7) intron (NM_001004470, intron 4 of 7) -37841 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 312.166-2 chr6 106087012 106087498 + 1.33333 NA intron (NM_001198, intron 1 of 6) intron (NM_001198, intron 1 of 6) 919 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 288.333-6 chr15 72091990 72092400 + 1.33333 NA intron (NM_006901, intron 1 of 41) intron (NM_006901, intron 1 of 41) -22063 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 250.499 chr18 29231165 29231352 + 1.33333 NA Intergenic L1MB2|LINE|L1 -1054128 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 372.666-2 chr1 174475087 174475492 + 1.33333 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 27325 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 236.833-7 chr13 112610721 112610913 + 1.33333 NA Intergenic L1MDb|LINE|L1 -22632 NM_001286279 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 197.666-4 chr2 47034232 47034544 + 1.33333 NA intron (NM_001288951, intron 15 of 20) intron (NM_001288951, intron 15 of 20) -92533 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 193.666-3 chr11 75768496 75768951 + 1.33333 NA promoter-TSS (NR_046090) promoter-TSS (NR_046090) -10 NM_001253891 84649 Hs.129798 NM_032564 ENSG00000062282 DGAT2 ARAT|GS1999FULL|HMFN1045 diacylglycerol O-acyltransferase 2 protein-coding 301.333-9 chr15 57551539 57551872 + 1.33333 NA TTS (NM_001252335) TTS (NM_001252335) -40199 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 248.833-11 chr19 12661741 12662010 + 1.33333 NA intron (NM_001173498, intron 6 of 23) AluSx|SINE|Alu 4867 NM_000528 4125 Hs.356769 NM_000528 ENSG00000104774 MAN2B1 LAMAN|MANB mannosidase alpha class 2B member 1 protein-coding 270.666-5 chr18 57800348 57800679 + 1.33333 NA intron (NM_005603, intron 1 of 27) intron (NM_005603, intron 1 of 27) 2802 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 394.333-4 chr15 63514626 63515159 + 1.33333 NA intron (NM_001256702, intron 1 of 13) intron (NM_001256702, intron 1 of 13) 10299 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 262.833-10 chr20 45373765 45374150 + 1.33333 NA exon (NM_014477, exon 5 of 5) exon (NM_014477, exon 5 of 5) 4368 NM_014477 27296 Hs.710271 NM_014477 ENSG00000124251 TP53TG5 C20orf10|CLG01 TP53 target 5 protein-coding 171.167-25 chr3 158110295 158110547 + 1.33333 NA intron (NM_001271838, intron 1 of 9) intron (NM_001271838, intron 1 of 9) 332 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 227.501-2 chr4 80951368 80951586 + 1.33333 NA intron (NM_152770, intron 5 of 5) intron (NM_152770, intron 5 of 5) -79231 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 243.333-37 chr5 169030192 169030498 + 1.33333 NA intron (NR_109897, intron 2 of 4) intron (NR_109897, intron 2 of 4) 17118 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 240-49 chr5 39528769 39528996 + 1.33333 NA Intergenic Intergenic 8451 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 169.5-5 chr1 181577366 181577559 + 1.33333 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 93945 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 226.666-4 chr18 73223045 73223260 + 1.33333 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 41346 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 201.333-38 chr3 122398515 122398736 + 1.33333 NA intron (NM_014367, intron 1 of 4) L1MC5a|LINE|L1 14443 NM_014367 26355 Hs.584881 NM_014367 ENSG00000114023 FAM162A C3orf28|E2IG5|HGTD-P family with sequence similarity 162 member A protein-coding 220.666-2 chr10 116599694 116599890 + 1.33333 NA intron (NM_006229, intron 8 of 12) MIR|SINE|MIR 8779 NM_001303135 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 295.167-13 chr21 26878517 26878995 + 1.33333 NA Intergenic Intergenic -33347 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 243.333-31 chr4 47715685 47715975 + 1.33333 NA intron (NM_006587, intron 5 of 21) L3b|LINE|CR1 63161 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 190.5-34 chr4 141643711 141643893 + 1.33333 NA intron (NR_037840, intron 1 of 7) L2a|LINE|L2 7219 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 218.333-26 chr7 120398863 120399253 + 1.33333 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 125883 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 206.166 chr1 63729490 63729694 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -44425 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 235.833-10 chr20 32067094 32067504 + 1.33333 NA intron (NM_001172132, intron 2 of 13) L1MB3|LINE|L1 15057 NM_001172133 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 476.999 chr1 205907707 205908209 + 1.33333 NA Intergenic L1M2c|LINE|L1 17938 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 442.333-2 chr14 64010162 64010690 + 1.33333 NA intron (NM_015180, intron 32 of 114) intron (NM_015180, intron 32 of 114) 84699 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 325.667-12 chr7 106746335 106746983 + 1.33333 NA Intergenic L1MB8|LINE|L1 -85501 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 174-30 chr20 35025314 35025536 + 1.33333 NA intron (NM_015638, intron 8 of 18) AluJr|SINE|Alu -34953 NR_039912 100616134 NR_039912 ENSG00000283441 MIR499B MIR499A|hsa-mir-499b microRNA 499b ncRNA 282.333-13 chr5 168533557 168533889 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR 4418 NM_001355274 345630 Hs.166262 NM_001355274 ENSG00000188573 FBLL1 - fibrillarin like 1 protein-coding 303.333-7 chr2 148685015 148685304 + 1.33333 NA intron (NM_015630, intron 1 of 13) L1ME5|LINE|L1 40408 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 285.833-15 chr6 48605491 48605712 + 1.33333 NA Intergenic Intergenic -536912 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 362.5-7 chr2 240664569 240665084 + 1.33333 NA Intergenic L1MC3|LINE|L1 18059 NM_001102467 653437 Hs.437167 NM_001102467 ENSG00000185176 AQP12B INSSA3 aquaporin 12B protein-coding 214-15 chr14 58180580 58180830 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -19444 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 345-9 chr19 51707503 51707842 + 1.33333 NA Intergenic MER21C|LTR|ERVL -14216 NR_108100 102238594 Hs.640185 NR_108100 ENSG00000269959 SPACA6P-AS LINC01129 SPACA6P antisense RNA ncRNA 242.333 chr1 33586841 33587112 + 1.33333 NA intron (NM_052896, intron 46 of 69) intron (NM_052896, intron 46 of 69) 114331 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 173.666-5 chr5 53096751 53096949 + 1.33333 NA 3' UTR (NM_176806, exon 7 of 7) 3' UTR (NM_176806, exon 7 of 7) 12907 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 222.333-4 chr12 98401434 98401779 + 1.33333 NA Intergenic MER45A|DNA|hAT-Tip100 55539 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 206.666-4 chr8 125111833 125112049 + 1.33333 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 20081 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 252.999-2 chr6 149388469 149388782 + 1.33333 NA intron (NM_001292034, intron 3 of 6) intron (NM_001292034, intron 3 of 6) -11637 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 258.666-3 chr11 94995886 94996180 + 1.33333 NA intron (NM_018039, intron 2 of 2) LTR105_Mam|LTR|ERVL 22324 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 200.166-2 chr22 24826277 24826502 + 1.33333 NA intron (NM_001098498, intron 2 of 23) MER58D|DNA|hAT-Charlie 20168 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 178-4 chr1 236796575 236796868 + 1.33333 NA intron (NM_000254, intron 1 of 32) intron (NM_000254, intron 1 of 32) 1429 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 241-31 chr7 54328907 54329124 + 1.33333 NA Intergenic Intergenic -1682 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 364.666-4 chr18 6756488 6757169 + 1.33333 NA intron (NM_001366230, intron 1 of 17) MLT2A2|LTR|ERVL -26966 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 171.5-40 chr6 15548170 15548426 + 1.33333 NA intron (NR_036448, intron 8 of 9) intron (NR_036448, intron 8 of 9) 114730 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 249-36 chr9 114693106 114693571 + 1.33333 NA Intergenic Intergenic -11249 NM_001199233 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 361.166 chr16 82163928 82164244 + 1.33333 NA exon (NM_005792, exon 2 of 5) exon (NM_005792, exon 2 of 5) 6138 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 179.333-16 chr15 74531595 74531741 + 1.33333 NA Intergenic Intergenic -9509 NM_001307939 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 211.667-7 chr12 38505978 38506278 + 1.33333 NA Intergenic Intergenic 189354 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 277.666-5 chr15 86356417 86356713 + 1.33333 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -39597 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 382.499 chr2 160780034 160780439 + 1.33333 NA Intergenic L1PA15|LINE|L1 -286429 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 312.5-3 chr11 6315771 6316411 + 1.33333 NA Intergenic Intergenic 4410 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 CAVIN3 HSRBC|PRKCDBP|SRBC|cavin-3 caveolae associated protein 3 protein-coding 423-3 chr11 98926530 98927139 + 1.33333 NA Intergenic Intergenic -94115 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 191.5-30 chr22 17164614 17164794 + 1.33333 NA intron (NR_024483, intron 1 of 1) MLT1J|LTR|ERVL-MaLR 583 NM_017829 27440 Hs.26890 NM_017829 ENSG00000069998 HDHD5 CECR5 haloacid dehalogenase like hydrolase domain containing 5 protein-coding 242.5-42 chr6 27497906 27498201 + 1.33333 NA Intergenic Intergenic -24935 NM_007149 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 326.833-4 chr11 32809792 32810093 + 1.33333 NA Intergenic Intergenic -15284 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 181.167-4 chr1 209179685 209179932 + 1.33333 NA Intergenic L1PB1|LINE|L1 -145648 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 319.333-4 chr11 64976493 64976909 + 1.33333 NA Intergenic Intergenic -4593 NM_001037225 283129 Hs.567793 NM_001037225 ENSG00000168070 MAJIN C11orf85 membrane anchored junction protein protein-coding 477.5-5 chr6 1595665 1596670 + 1.33333 NA Intergenic Intergenic -9364 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 166.667-45 chr5 57769682 57769886 + 1.33333 NA Intergenic L1MC3|LINE|L1 119124 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 312.5-8 chr13 69182112 69182447 + 1.33333 NA Intergenic Intergenic -40067 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 208-27 chr20 21050094 21050334 + 1.33333 NA Intergenic LTR16E2|LTR|ERVL 56144 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 217.333-36 chr6 28383667 28383879 + 1.33333 NA promoter-TSS (NR_133668) promoter-TSS (NR_133668) -334 NR_133668 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 330.833-14 chr8 139607976 139608282 + 1.33333 NA intron (NR_104210, intron 3 of 3) intron (NR_104210, intron 3 of 3) 94994 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 237.5-24 chr2 160719843 160720088 + 1.33333 NA Intergenic Intergenic -226158 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 413.166 chr4 37131759 37132068 + 1.33333 NA Intergenic Intergenic 110078 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 234.833-15 chr2 217488111 217488408 + 1.33333 NA intron (NR_026597, intron 2 of 12) L1MEf|LINE|L1 205526 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 309.666-6 chr5 15313265 15313639 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -46892 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 348-2 chr11 70419720 70420186 + 1.33333 NA intron (NM_005231, intron 9 of 17) intron (NM_005231, intron 9 of 17) 21424 NM_001184740 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 410.666-2 chr2 99662779 99663227 + 1.33333 NA intron (NM_001025108, intron 11 of 23) intron (NM_001025108, intron 11 of 23) -172986 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 174.667-19 chr19 2895765 2896002 + 1.33333 NA Intergenic Intergenic -5045 NM_173480 126295 Hs.591378 NM_173480 ENSG00000171970 ZNF57 ZNF424 zinc finger protein 57 protein-coding 230.333-18 chr2 11506386 11506650 + 1.33333 NA Intergenic Intergenic -27527 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 325.167-2 chr1 68750200 68750701 + 1.33333 NA Intergenic Intergenic -253368 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 224-32 chr3 98349034 98349293 + 1.33333 NA Intergenic Charlie7|DNA|hAT-Charlie -4691 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 189-23 chr17 50952064 50952439 + 1.33333 NA Intergenic Intergenic -84273 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 301.333-5 chr12 49724615 49725024 + 1.33333 NA Intergenic L1PB1|LINE|L1 -16738 NM_003217 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 246.333-6 chr1 113092328 113092522 + 1.33333 NA intron (NM_001312686, intron 3 of 18) intron (NM_001312686, intron 3 of 18) 19227 NM_014813 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 287.833-14 chr3 176106396 176106855 + 1.33333 NA Intergenic Intergenic -137926 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 255.333-7 chr10 52401446 52401760 + 1.33333 NA Intergenic Intergenic 53669 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 432.666-4 chr4 92297228 92297832 + 1.33333 NA Intergenic MER103C|DNA|hAT-Charlie -6436 NM_001510 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 201-6 chr13 75452490 75452714 + 1.33333 NA intron (NM_001286658, intron 1 of 19) intron (NM_001286658, intron 1 of 19) 29566 NM_001286659 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 297.166-4 chr3 95004625 95004960 + 1.33333 NA Intergenic Intergenic 66529 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 373-12 chr7 55593692 55594195 + 1.33333 NA Intergenic Intergenic -21441 NM_030796 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 271.333-4 chr12 12411722 12411994 + 1.33333 NA intron (NM_001300742, intron 2 of 3).2 L1PA6|LINE|L1 54780 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 193.167-9 chr14 47442143 47442421 + 1.33333 NA intron (NM_001113498, intron 1 of 16) L2a|LINE|L2 -99036 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 325.666-8 chr7 37908475 37908807 + 1.33333 NA intron (NM_003014, intron 5 of 5) intron (NM_003014, intron 5 of 5) 8176 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 248.666-7 chr4 61124399 61124844 + 1.33333 NA Intergenic L1MCa|LINE|L1 -19035 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 556.5 chr1 101506408 101507306 + 1.33333 NA Intergenic Intergenic 183020 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 367.499-2 chr5 101953604 101953933 + 1.33333 NA Intergenic PABL_B-int|LTR|ERV1 342516 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 451.333 chr1 18597077 18597610 + 1.33333 NA Intergenic Intergenic -33503 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 232-24 chr2 172178759 172179068 + 1.33333 NA Intergenic Intergenic 75907 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 491.167-3 chr6 26002962 26003712 + 1.33333 NA Intergenic Intergenic 14475 NM_005325 3024 Hs.150206 NM_005325 ENSG00000124610 HIST1H1A H1.1|H1A|H1F1|HIST1 histone cluster 1 H1 family member a protein-coding 165-44 chr6 55019095 55019220 + 1.33333 NA Intergenic L1MC3|LINE|L1 -87303 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 332.666-5 chr9 87490198 87490502 + 1.33333 NA Intergenic Intergenic -6878 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 345.499-2 chr7 17706893 17707217 + 1.33333 NA Intergenic Intergenic -148146 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 321.5-26 chr9 98488774 98489105 + 1.33333 NA intron (NM_005458, intron 4 of 18) MIR|SINE|MIR 219996 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 260.667-27 chr2 64916104 64916446 + 1.33333 NA intron (NR_036586, intron 1 of 2) MIR3|SINE|MIR 16172 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 184.5-23 chr2 81123878 81124072 + 1.33333 NA Intergenic L1MB7|LINE|L1 342971 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 369-4 chr11 87805693 87806275 + 1.33333 NA Intergenic MLT2D|LTR|ERVL -86573 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 341.999 chr4 147408860 147409234 + 1.33333 NA Intergenic Intergenic -64330 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 423.333-3 chr1 247681813 247682175 + 1.33333 NA Intergenic L1MEg|LINE|L1 -8953 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 255.166-2 chr2 132459071 132459367 + 1.33333 NA intron (NM_001508, intron 1 of 1) L1M7|LINE|L1 25508 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 336.666-4 chr7 92457100 92457549 + 1.33333 NA 3' UTR (NM_021167, exon 5 of 5) 3' UTR (NM_021167, exon 5 of 5) 9842 NR_052016 57798 Hs.21145 NM_021167 ENSG00000157259 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 278.333-16 chr20 58350509 58350880 + 1.33333 NA intron (NM_020673, intron 3 of 6) L1M4a1|LINE|L1 -38425 NM_004738 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 298.667-23 chr9 75026815 75027297 + 1.33333 NA promoter-TSS (NM_001320497) promoter-TSS (NM_001320497) 95 NM_001320497 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 290.333-6 chr10 71897210 71897434 + 1.33333 NA Intergenic L2a|LINE|L2 -46071 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 221.666-11 chrX 58115478 58115700 + 1.33333 NA Intergenic HSAT4|Satellite|centr -204956 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 348.001 chr15 100918423 100918911 + 1.33333 NA promoter-TSS (NM_024652) promoter-TSS (NM_024652) 616 NR_135831 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 254.333-5 chr11 64790034 64790471 + 1.33333 NA exon (NM_004579, exon 29 of 32) exon (NM_004579, exon 29 of 32) -11408 NM_201997 7536 Hs.502829 NM_004630 ENSG00000168066 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 518.666 chr3 28475757 28476519 + 1.33333 NA intron (NM_001324170, intron 3 of 6) (TA)n|Simple_repeat|Simple_repeat -99140 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 266.166-3 chr2 123177898 123178267 + 1.33333 NA Intergenic Intergenic -104601 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 219.833-21 chr3 53375144 53375444 + 1.33333 NA Intergenic MIR3|SINE|MIR -27751 NM_001290207 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 457.666-2 chr4 59612882 59613452 + 1.33333 NA Intergenic Intergenic 599594 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 257.333-16 chr3 30908853 30909055 + 1.33333 NA Intergenic Intergenic -14293 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 297.333-5 chr11 94175341 94175622 + 1.33333 NA intron (NM_015368, intron 2 of 4) intron (NM_015368, intron 2 of 4) 46640 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 243.333-10 chr11 108986553 108986798 + 1.33333 NA Intergenic L1MEj|LINE|L1 321606 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 231.834-8 chr4 54165345 54165664 + 1.33333 NA Intergenic L2c|LINE|L2 -63789 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 195-25 chr2 162671506 162671668 + 1.33333 NA intron (NM_033272, intron 2 of 15) L1PB4|LINE|L1 -97349 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 422.333-2 chr2 14944939 14945487 + 1.33333 NA Intergenic L1M3f|LINE|L1 312496 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 257-29 chr5 160119599 160119950 + 1.33333 NA promoter-TSS (NM_001349735) promoter-TSS (NM_001349735) -324 NM_001130864 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 166.5 chr1 186499473 186499629 + 1.33333 NA Intergenic Intergenic -38437 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 228.333-26 chr6 48765317 48765828 + 1.33333 NA Intergenic Intergenic -696883 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 333.666-3 chr4 25145046 25145401 + 1.33333 NA intron (NM_016955, intron 6 of 10) L1MA8|LINE|L1 15226 NM_016955 51091 Hs.253305 NM_016955 ENSG00000109618 SEPSECS LP|PCH2D|SLA|SLA/LP Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein-coding 330.666 chr10 101049235 101049622 + 1.33333 NA Intergenic Intergenic -11814 NM_001319303 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 213.166-2 chr14 58277354 58277579 + 1.33333 NA intron (NR_029435, intron 2 of 3) AluSq2|SINE|Alu -10567 NR_146595 55451 NR_146595 ENSG00000279636 LINC00216 C14orf107|NCRNA00216|PRO1617 long intergenic non-protein coding RNA 216 ncRNA 371.167-3 chr17 59260728 59261144 + 1.33333 NA intron (NM_182569, intron 6 of 9) intron (NM_182569, intron 6 of 9) 40425 NM_182569 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 176.666-8 chr4 44173898 44174084 + 1.33333 NA TTS (NM_198353) TTS (NM_198353) 156929 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 242.666-17 chr7 69412739 69413060 + 1.33333 NA Intergenic MLT1G|LTR|ERVL-MaLR 184725 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 276.5-8 chr19 1624502 1624803 + 1.33333 NA intron (NM_001136139, intron 7 of 19) Tigger17|DNA|TcMar-Tigger -19190 NM_006830 10975 Hs.8372 NM_006830 ENSG00000127540 UQCR11 0710008D09Rik|QCR10|UQCR ubiquinol-cytochrome c reductase, complex III subunit XI protein-coding 395.332 chr6 161473342 161473657 + 1.33333 NA intron (NR_134595, intron 1 of 3) L1MA9|LINE|L1 2522 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 267.999 chr19 42281749 42281982 + 1.33333 NA intron (NM_001304815, intron 2 of 20) intron (NM_001304815, intron 2 of 20) -2800 NM_015125 23152 Hs.388236 NM_015125 ENSG00000079432 CIC MRD45 capicua transcriptional repressor protein-coding 398.333-6 chr15 35098515 35099298 + 1.33333 NA Intergenic Intergenic -13498 NM_001355281 388112 Hs.635882 NM_001355281 ENSG00000255192 NANOGP8 NANOGP1|PN8 Nanog homeobox retrogene P8 protein-coding 184-10 chr10 79467870 79468372 + 1.33333 NA Intergenic Intergenic -22497 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 333.166-9 chr6 137832249 137832919 + 1.33333 NA intron (NR_049793, intron 3 of 3) intron (NR_049793, intron 3 of 3) -34675 NM_001270507 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 396.667-2 chr14 75749027 75749628 + 1.33333 NA intron (NM_015072, intron 17 of 31) LTR79|LTR|ERVL 88081 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 193-14 chr16 5003004 5003419 + 1.33333 NA intron (NM_014692, intron 10 of 15) intron (NM_014692, intron 10 of 15) -30491 NR_038913 100507589 Hs.729936 NR_038913 NAGPA-AS1 - NAGPA antisense RNA 1 ncRNA 262.667-32 chr8 52523354 52523650 + 1.33333 NA Intergenic Intergenic 41928 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 210-12 chr14 36785652 36785830 + 1.33333 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 128173 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 239.667-10 chr10 114972296 114972642 + 1.33333 NA intron (NM_139169, intron 6 of 7) intron (NM_139169, intron 6 of 7) -22188 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 344.666-4 chr7 47084201 47084531 + 1.33333 NA Intergenic L1ME3G|LINE|L1 380437 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 310.5-12 chr3 177942610 177943000 + 1.33333 NA Intergenic Intergenic 125940 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 225.333-28 chr3 194404616 194404969 + 1.33333 NA 3' UTR (NM_024524, exon 32 of 32) 3' UTR (NM_024524, exon 32 of 32) -5526 NM_004488 2814 Hs.73734 NM_004488 ENSG00000178732 GP5 CD42d|GPV glycoprotein V platelet protein-coding 189.666-2 chr10 122051803 122052079 + 1.33333 NA intron (NM_206861, intron 3 of 19) intron (NM_206861, intron 3 of 19) -60944 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 261.333-16 chr5 178924618 178924858 + 1.33333 NA intron (NM_030613, intron 4 of 4) AluSq2|SINE|Alu -16460 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 233.5-12 chr17 13114653 13114986 + 1.33333 NA Intergenic Intergenic -96755 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 287-5 chr12 238017 238532 + 1.33333 NA intron (NM_001190997, intron 2 of 12) intron (NM_001190997, intron 2 of 12) 19025 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 204.167-15 chr3 99108591 99108829 + 1.33333 NA Intergenic Intergenic -207015 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 169.333-59 chr7 89680346 89680489 + 1.33333 NA Intergenic MLT1G|LTR|ERVL-MaLR -438983 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 227.667-9 chr12 121984024 121984432 + 1.33333 NA intron (NM_144668, intron 19 of 21) intron (NM_144668, intron 19 of 21) -37656 NM_020993 605 Hs.530970 NM_020993 ENSG00000110987 BCL7A BCL7 BAF chromatin remodeling complex subunit BCL7A protein-coding 337.666-8 chr8 81841399 81841772 + 1.33333 NA intron (NM_001348189, intron 1 of 9) intron (NM_001348189, intron 1 of 9) 600 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 193-37 chr8 121069207 121069517 + 1.33333 NA Intergenic L1PA17|LINE|L1 -257316 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 347.499 chr11 118017146 118017525 + 1.33333 NA intron (NM_001354434, intron 3 of 5) intron (NM_001354434, intron 3 of 5) 30941 NR_026691 3587 Hs.504035 NM_001558 ENSG00000110324 IL10RA CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R interleukin 10 receptor subunit alpha protein-coding 266-6 chr14 67907966 67908344 + 1.33333 NA intron (NM_133509, intron 7 of 10) MER5A|DNA|hAT-Charlie 84563 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 191.667-14 chr15 78226042 78226286 + 1.33333 NA intron (NM_015162, intron 1 of 13) L1MA2|LINE|L1 8401 NM_015162 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 311.999 chr5 43626857 43627153 + 1.33333 NA intron (NM_012343, intron 6 of 21) MLT1L|LTR|ERVL-MaLR -23775 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 223.333-22 chr2 62747303 62747525 + 1.33333 NA exon (NM_001354221, exon 3 of 25) exon (NM_001354221, exon 3 of 25) 40517 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 205.667-43 chr8 115570967 115571216 + 1.33333 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 96922 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 333.333-10 chr22 48915410 48915797 + 1.33333 NA Intergenic L1ME1|LINE|L1 48833 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 334.999 chr10 66966738 66967305 + 1.33333 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 40985 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 283.333-20 chr8 101325399 101325702 + 1.33333 NA Intergenic L1MD|LINE|L1 -43343 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 241.667-6 chr11 28486713 28486989 + 1.33333 NA Intergenic Intergenic -9303 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 260.333-7 chr2 32727444 32727916 + 1.33333 NA intron (NM_017735, intron 10 of 19) Charlie1a|DNA|hAT-Charlie 92425 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 245.667 chr10 56987139 56987551 + 1.33333 NA Intergenic Intergenic 317214 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 175.334-6 chr6 13941025 13941423 + 1.33333 NA intron (NM_001165033, intron 1 of 1) L1ME3A|LINE|L1 16031 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 263.333-17 chr4 120129610 120130027 + 1.33333 NA Intergenic L2c|LINE|L2 -62970 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 240-33 chr22 24423604 24423827 + 1.33333 NA intron (NM_001278500, intron 1 of 2) CpG 118 NM_001278500 135 Hs.197029 NM_000675 ENSG00000128271 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 182.833-2 chr1 37645832 37646095 + 1.33333 NA Intergenic AluSx1|SINE|Alu -11071 NM_001242910 284654 Hs.135015 NM_173640 ENSG00000169218 RSPO1 CRISTIN3|RSPO R-spondin 1 protein-coding 212.333-16 chr2 110106014 110106315 + 1.33333 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) 10402 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 359.333-7 chr2 69454495 69454956 + 1.33333 NA Intergenic AluSg|SINE|Alu -17097 NM_001002756 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 211.666-8 chr7 99907669 99907972 + 1.33333 NA intron (NM_033091, intron 3 of 5) intron (NM_033091, intron 3 of 5) 11710 NM_033091 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 372-6 chr2 38317144 38317668 + 1.33333 NA 5' UTR (NM_001330464, exon 4 of 13) 5' UTR (NM_001330464, exon 4 of 13) 59124 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 214.333-13 chr12 116543356 116543523 + 1.33333 NA Intergenic AluSz|SINE|Alu 10004 NR_027346 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 470.833-9 chr22 22102832 22103577 + 1.33333 NA Intergenic Intergenic -59270 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 237.5-2 chr1 45699112 45699430 + 1.33333 NA 3' UTR (NM_005897, exon 9 of 9) 3' UTR (NM_005897, exon 9 of 9) 11090 NM_016486 51249 Hs.699548 NM_016486 ENSG00000159596 TMEM69 C1orf154 transmembrane protein 69 protein-coding 285.167-19 chr9 28310605 28310933 + 1.33333 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 408536 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 234-18 chr18 4202505 4202773 + 1.33333 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -61963 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 247.001-4 chr2 104459944 104460340 + 1.33333 NA intron (NR_015399, intron 1 of 3) L1M5|LINE|L1 25795 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 781.499 chr20 60210006 60210777 + 1.33333 NA intron (NR_046099, intron 3 of 4) (TG)n|Simple_repeat|Simple_repeat 71899 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 299.333-20 chr8 81551157 81551520 + 1.33333 NA Intergenic Intergenic -19948 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 189.666-3 chr13 71340358 71340623 + 1.33333 NA Intergenic L1M4|LINE|L1 325349 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 207.666-6 chr6 15463857 15464057 + 1.33333 NA intron (NM_004973, intron 4 of 17) intron (NM_004973, intron 4 of 17) 199071 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 248-30 chr4 121950401 121950630 + 1.33333 NA intron (NM_001130698, intron 1 of 11) CpG 1545 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 178.833-36 chr7 3342720 3342910 + 1.33333 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 41563 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 234.833-19 chr3 127658627 127658969 + 1.33333 NA intron (NM_015720, intron 2 of 7) HAL1ME|LINE|L1 -14140 NR_033429 80325 Hs.107812 NM_032548 ENSG00000114626 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP|PP2259 ankyrin repeat and BTB domain containing 1 protein-coding 281.333-28 chr8 133398319 133398595 + 1.33333 NA Intergenic Intergenic -101153 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 236.5-16 chr18 24447097 24447405 + 1.33333 NA intron (NM_018439, intron 8 of 10) intron (NM_018439, intron 8 of 10) -13386 NM_001143828 59340 Hs.287388 NM_021624 ENSG00000134489 HRH4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 285.999 chr14 59520954 59521337 + 1.33333 NA intron (NM_001164399, intron 17 of 19) MLT2A2|LTR|ERVL 36628 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 288.666-11 chr7 13217168 13217454 + 1.33333 NA Intergenic Intergenic 529678 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 498.833-4 chr3 143648105 143648920 + 1.33333 NA intron (NM_173653, intron 6 of 15) MER1B|DNA|hAT-Charlie 199956 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 358.666-2 chr10 62094210 62094618 + 1.33333 NA 3' UTR (NM_032199, exon 10 of 10) 3' UTR (NM_032199, exon 10 of 10) 45057 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 179.5-6 chr11 6979280 6979433 + 1.33333 NA intron (NR_149005, intron 6 of 6) intron (NR_149005, intron 6 of 6) 40990 NM_001354832 7761 Hs.445849 NM_013249 ENSG00000149050 ZNF214 BAZ-1|BAZ1 zinc finger protein 214 protein-coding 454.167-4 chr6 51060113 51060663 + 1.33333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 241517 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 224-41 chr5 76083991 76084268 + 1.33333 NA intron (NM_014979, intron 1 of 12) CpG 746 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 252.5-29 chr9 129741034 129741409 + 1.33333 NA intron (NM_004878, intron 2 of 2) L2b|LINE|L2 11821 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 191.5-40 chr5 30790043 30790433 + 1.33333 NA Intergenic Intergenic -403448 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 214.666-3 chr15 94205626 94205898 + 1.33333 NA Intergenic Intergenic -92439 NM_001159643 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 212.666-4 chr12 91582130 91582294 + 1.33333 NA Intergenic AluSx1|SINE|Alu -399395 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 213.333-34 chr6 1565978 1566242 + 1.33333 NA Intergenic L1M4b|LINE|L1 -39421 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 229.167-12 chr15 45919962 45920346 + 1.33333 NA intron (NR_135680, intron 2 of 4) intron (NR_135680, intron 2 of 4) 214959 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 285.5-34 chr8 137776109 137776471 + 1.33333 NA Intergenic Intergenic 307255 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 320-8 chr15 55656810 55657243 + 1.33333 NA intron (NM_173814, intron 11 of 19) intron (NM_173814, intron 11 of 19) -68055 NM_015617 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 404.166 chr2 142165590 142166151 + 1.33333 NA Intergenic Intergenic -34169 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 245.5-12 chr2 41395048 41395374 + 1.33333 NA Intergenic L1MA5A|LINE|L1 -482344 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 234.666-3 chr14 56480503 56480774 + 1.33333 NA Intergenic Intergenic -33693 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 327.333-14 chrX 100402312 100402603 + 1.33333 NA intron (NM_020766, intron 2 of 4) intron (NM_020766, intron 2 of 4) 7816 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 226-9 chr10 57534440 57534712 + 1.33333 NA Intergenic Intergenic -230017 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 227.166 chr11 71937930 71938126 + 1.33333 NA intron (NM_001300926, intron 1 of 6) intron (NM_001300926, intron 1 of 6) 8982 NM_018320 55298 Hs.368554 NM_018320 ENSG00000137522 RNF121 - ring finger protein 121 protein-coding 232.666-2 chr1 67514468 67514692 + 1.33333 NA Intergenic LTR9C|LTR|ERV1 -84178 NM_001018067 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 299.333-17 chr6 55822631 55822971 + 1.33333 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 52789 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 168.167-34 chr7 79851926 79852171 + 1.33333 NA Intergenic Intergenic -282783 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 173-9 chr10 117930183 117930378 + 1.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -116541 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 224-25 chr2 190528630 190528952 + 1.33333 NA intron (NR_136298, intron 1 of 8) intron (NR_136298, intron 1 of 8) 5931 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 255.333-23 chr5 127874311 127874594 + 1.33333 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 171063 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 479-4 chr18 47754362 47755182 + 1.33333 NA Intergenic Intergenic 175887 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 214.666-4 chr20 10845678 10846019 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 63424 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 204.167-7 chr15 86681663 86681949 + 1.33333 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -251074 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 284.333-14 chr3 86165866 86166267 + 1.33333 NA Intergenic Intergenic -315877 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 211.333-19 chr17 58788945 58789178 + 1.33333 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 33192 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 333.167-7 chr8 89139690 89140222 + 1.33333 NA Intergenic L1ME3A|LINE|L1 617755 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 226-38 chr5 96766337 96766597 + 1.33333 NA intron (NM_001042446, intron 22 of 26) intron (NM_001042446, intron 22 of 26) 22865 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 278.167-25 chr6 38997182 38997551 + 1.33333 NA intron (NM_001371, intron 87 of 91) intron (NM_001371, intron 87 of 91) -44259 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 190.666-5 chr3 129439996 129440290 + 1.33333 NA promoter-TSS (NM_003925) promoter-TSS (NM_003925) 36 NM_001276273 8930 Hs.35947 NM_003925 ENSG00000129071 MBD4 MED1 methyl-CpG binding domain 4, DNA glycosylase protein-coding 286.666-6 chr2 75203455 75203806 + 1.33333 NA Intergenic L1PA12|LINE|L1 -4110 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 237.666-2 chr10 113877060 113877319 + 1.33333 NA intron (NM_198514, intron 3 of 10) intron (NM_198514, intron 3 of 10) 22528 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 237.333-33 chr6 129731840 129732045 + 1.33333 NA Intergenic MIR1_Amn|SINE|MIR -21765 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 360.833-3 chr19 40412918 40413393 + 1.33333 NA intron (NM_020956, intron 1 of 5) MIR|SINE|MIR 209 NM_181882 57716 Hs.205457 NM_020956 ENSG00000105227 PRX CMT4F periaxin protein-coding 216-16 chr15 56991333 56991636 + 1.33333 NA intron (NM_207038, intron 3 of 19) intron (NM_207038, intron 3 of 19) 72039 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 213.666 chr1 180477589 180477823 + 1.33333 NA intron (NM_032360, intron 3 of 7) intron (NM_032360, intron 3 of 7) 24871 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 255.167-28 chr8 79299347 79299572 + 1.33333 NA Intergenic Intergenic -32729 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 351.333-14 chr7 99994081 99994621 + 1.33333 NA Intergenic Intergenic -2724 NR_159960 105375423 NR_159959 LOC105375423 - uncharacterized LOC105375423 ncRNA 164.333-43 chr6 73803654 73803939 + 1.33333 NA intron (NM_001159588, intron 23 of 31) intron (NM_001159588, intron 23 of 31) 107593 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 260.667-19 chr17 44802284 44802628 + 1.33333 NA 3' UTR (NM_005497, exon 3 of 3) 3' UTR (NM_005497, exon 3 of 3) 27831 NM_005497 10052 Hs.712052 NM_005497 ENSG00000182963 GJC1 CX45|GJA7 gap junction protein gamma 1 protein-coding 236.666-3 chr17 81376703 81377076 + 1.33333 NA intron (NM_001347841, intron 3 of 3) intron (NM_001347841, intron 3 of 3) 8236 NM_001347841 100130370 Hs.646594 NM_001272086 LOC100130370 - uncharacterized LOC100130370 protein-coding 233.166-2 chr12 5187308 5187645 + 1.33333 NA Intergenic Intergenic 55675 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 244.333-21 chr3 94250107 94250315 + 1.33333 NA Intergenic Intergenic 187150 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 255.333-4 chr1 158644210 158644590 + 1.33333 NA intron (NM_003126, intron 29 of 51) intron (NM_003126, intron 29 of 51) 37961 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 357.5-7 chr16 73099107 73099571 + 1.33333 NA Intergenic Intergenic 6990 NR_027756 283902 Hs.382776 NM_001101347 ENSG00000260880 HCCAT5 FJ222407|HTA hepatocellular carcinoma associated transcript 5 ncRNA 227.166-3 chr13 94422876 94423144 + 1.33333 NA Intergenic Intergenic 56672 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 601.167-2 chr19 41792397 41793332 + 1.33333 NA Intergenic MER20|DNA|hAT-Charlie -3723 NM_001815 1084 Hs.11 NM_001815 ENSG00000170956 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding 257.666-5 chr5 23281978 23282333 + 1.33333 NA Intergenic L1MB4|LINE|L1 -225454 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 168.167-26 chr4 44887804 44888058 + 1.33333 NA Intergenic L1MA2|LINE|L1 -161297 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 377.666-4 chr4 34497634 34498231 + 1.33333 NA Intergenic AluSp|SINE|Alu -228185 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 278.833-11 chr8 118265455 118265787 + 1.33333 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -153802 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 301.834-11 chr5 149397136 149397467 + 1.33333 NA intron (NM_001317987, intron 1 of 2) AluSx1|SINE|Alu 6901 NM_001317987 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 188-10 chr12 33747454 33747693 + 1.33333 NA Intergenic L1ME3C|LINE|L1 -274923 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 189.5-22 chr2 53748093 53748278 + 1.33333 NA intron (NM_001201965, intron 2 of 8) MIR|SINE|MIR -19598 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 170.5-26 chr20 53217304 53217682 + 1.33333 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 32210 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 192.667-37 chr8 40342130 40342641 + 1.33333 NA intron (NR_156738, intron 1 of 2) AluJr|SINE|Alu 978 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 238.5-6 chr11 11205325 11205581 + 1.33333 NA Intergenic Intergenic 147797 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 229.833-18 chr5 79202246 79202645 + 1.33333 NA Intergenic Intergenic -33686 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 339.166-6 chr7 116984606 116985030 + 1.33333 NA intron (NR_161423, intron 1 of 13) intron (NR_161423, intron 1 of 13) -30094 NM_001369602 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 488.666 chr14 104094495 104095040 + 1.33333 NA intron (NM_001080464, intron 3 of 15) intron (NM_001080464, intron 3 of 15) 9067 NM_001080464 374569 Hs.146239 NM_001080464 ENSG00000166183 ASPG C14orf76|GPA/WT|LYSOLP asparaginase protein-coding 255-14 chr15 83973726 83974050 + 1.33333 NA intron (NM_207517, intron 20 of 29) intron (NM_207517, intron 20 of 29) -106299 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 207.166-4 chr21 38505631 38505897 + 1.33333 NA intron (NR_111949, intron 3 of 4) intron (NR_111949, intron 3 of 4) -7260 NM_001136155 2078 Hs.473819 NM_004449 ENSG00000157554 ERG erg-3|p55 ETS transcription factor ERG protein-coding 267.333-16 chr3 159824436 159824786 + 1.33333 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -15250 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 520.5-3 chr21 26170582 26171284 + 1.33333 NA promoter-TSS (NM_001204302) promoter-TSS (NM_001204302) -163 NM_001204302 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 254.666-5 chr21 31100041 31100270 + 1.33333 NA Intergenic AluSx4|SINE|Alu 60785 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 323-6 chr12 14804321 14804704 + 1.33333 NA TTS (NM_001013698) TTS (NM_001013698) 842 NM_175874 144608 Hs.659951 NM_175874 ENSG00000182993 C12orf60 - chromosome 12 open reading frame 60 protein-coding 385.166-2 chr17 57435729 57436180 + 1.33333 NA intron (NM_001322250, intron 6 of 13) MIRb|SINE|MIR 87643 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 264-24 chr4 179441658 179441953 + 1.33333 NA Intergenic Intergenic -1533869 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 308.333-16 chr4 26405209 26405544 + 1.33333 NA intron (NM_203284, intron 3 of 11) intron (NM_203284, intron 3 of 11) 84148 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 465.666 chr8 121219333 121219815 + 1.33333 NA Intergenic THE1D-int|LTR|ERVL-MaLR -407528 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 316.667-2 chr1 183961166 183961763 + 1.33333 NA intron (NM_015101, intron 6 of 11) intron (NM_015101, intron 6 of 11) 76264 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 484-7 chr9 107481174 107481848 + 1.33333 NA Intergenic Intergenic 8258 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 373.332 chr10 32558031 32558389 + 1.33333 NA intron (NR_109826, intron 13 of 16) L1MEf|LINE|L1 112070 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 351.666-3 chr8 64262391 64262826 + 1.33333 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 105950 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 262.166-3 chr12 24709708 24709965 + 1.33333 NA Intergenic L2a|LINE|L2 -125668 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 283.999 chr1 41898572 41898819 + 1.33333 NA intron (NR_038261, intron 2 of 3) intron (NR_038261, intron 2 of 3) 20227 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 228.666 chr1 187024783 187024977 + 1.33333 NA Intergenic L1PA15|LINE|L1 -67962 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 291.5-19 chr2 113068642 113068938 + 1.33333 NA intron (NM_173161, intron 1 of 4) intron (NM_173161, intron 1 of 4) 820 NM_173161 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 251.333-4 chr1 239008790 239009005 + 1.33333 NA Intergenic Intergenic -377671 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 308.666-6 chr3 189825375 189825853 + 1.33333 NA intron (NM_003722, intron 4 of 13) intron (NM_003722, intron 4 of 13) -4308 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 282-28 chr9 103034670 103034959 + 1.33333 NA Intergenic Intergenic 39481 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 407.333-3 chr2 65343322 65343841 + 1.33333 NA intron (NM_001128210, intron 2 of 5) intron (NM_001128210, intron 2 of 5) 23197 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 184.333-2 chr1 109099825 109100138 + 1.33333 NA promoter-TSS (NR_003023) promoter-TSS (NR_003023) -212 NR_003023 677766 Hs.550815 NR_003023 ENSG00000278249 SCARNA2 HBII-382|mgU2-25/61 small Cajal body-specific RNA 2 ncRNA 271.333-17 chr22 27804269 27804677 + 1.33333 NA Intergenic Intergenic -2717 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 265.833-12 chr2 200711895 200712240 + 1.33333 NA TTS (NR_037886) TTS (NR_037886) 16344 NR_135012 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 202-6 chr10 65061371 65061570 + 1.33333 NA Intergenic (ATTTAAT)n|Simple_repeat|Simple_repeat -136952 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 243.5-6 chr14 84067812 84068065 + 1.33333 NA Intergenic Intergenic -1203994 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 312.333-6 chr11 111450452 111450791 + 1.33333 NA Intergenic Intergenic -32435 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 191.167-18 chr22 28111868 28112020 + 1.33333 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -191332 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 321.333-6 chr13 111428884 111429250 + 1.33333 NA Intergenic AluSx1|SINE|Alu 108425 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 227.166-5 chr2 158508550 158508852 + 1.33333 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 51749 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 350-20 chr7 73578918 73579216 + 1.33333 NA promoter-TSS (NM_001362660) promoter-TSS (NM_001362660) -488 NM_001362662 26608 Hs.647044 NM_012453 ENSG00000106638 TBL2 WBSCR13|WS-betaTRP transducin beta like 2 protein-coding 210.5-37 chr8 139027908 139028083 + 1.33333 NA Intergenic Intergenic -113954 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 284.667-14 chr7 14243274 14243663 + 1.33333 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -252043 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 199.333-40 chr5 52028731 52029006 + 1.33333 NA intron (NR_147166, intron 3 of 3) intron (NR_147166, intron 3 of 3) 20837 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 295.333-7 chr12 82789518 82789872 + 1.33333 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 102540 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 293.999 chr12 22326978 22327330 + 1.33333 NA intron (NM_003034, intron 1 of 4) MER115|DNA|hAT-Tip100 7560 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 186-37 chr6 110643304 110643567 + 1.33333 NA intron (NM_001300963, intron 5 of 13) L1MA3|LINE|L1 -166822 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 250.333-15 chr4 35257434 35257703 + 1.33333 NA Intergenic L1PA17|LINE|L1 986371 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 208-6 chr1 234968605 234968988 + 1.33333 NA Intergenic MIRb|SINE|MIR -4797 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 394.834 chr20 45012597 45013139 + 1.33333 NA intron (NM_001352385, intron 9 of 11) AluJo|SINE|Alu 46356 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 270.666-2 chr10 106815754 106816130 + 1.33333 NA intron (NM_001206569, intron 3 of 25) intron (NM_001206569, intron 3 of 25) 348764 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 175.5-12 chr12 33331180 33331417 + 1.33333 NA Intergenic Intergenic 108521 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 216.333-32 chr5 23149114 23149292 + 1.33333 NA Intergenic Charlie24|DNA|hAT-Charlie -295859 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 168.334-3 chr18 11729242 11729531 + 1.33333 NA intron (NM_182978, intron 1 of 11) L2c|LINE|L2 -22086 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 438.666-2 chr3 136862427 136862810 + 1.33333 NA promoter-TSS (NR_110175) promoter-TSS (NR_110175) 410 NM_006153 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 356.166-4 chr3 180631312 180631762 + 1.33333 NA exon (NM_181426, exon 14 of 20) exon (NM_181426, exon 14 of 20) 29374 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 236.666 chr10 50222768 50223145 + 1.33333 NA intron (NM_001143974, intron 6 of 18) intron (NM_001143974, intron 6 of 18) 25654 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 241.333-13 chr14 65734016 65734355 + 1.33333 NA intron (NM_004480, intron 9 of 9) L2c|LINE|L2 263083 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 206.5-58 chr8 104471808 104472018 + 1.33333 NA Intergenic MIRb|SINE|MIR -4858 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 434.333-4 chr22 44081146 44081635 + 1.33333 NA intron (NM_001243385, intron 1 of 12) intron (NM_001243385, intron 1 of 12) 12273 NM_001243385 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 179.333-40 chr5 45203420 45203630 + 1.33333 NA Intergenic Intergenic 394578 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 330.5-10 chr4 97752303 97752744 + 1.33333 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 385597 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 264.666-6 chr11 111592127 111592415 + 1.33333 NA Intergenic L2c|LINE|L2 -10178 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 306.666-6 chr8 78615060 78615473 + 1.33333 NA Intergenic Intergenic -50823 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 458.832 chr3 114056582 114056995 + 1.33333 NA promoter-TSS (NM_020817) promoter-TSS (NM_020817) 51 NM_001256835 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 395.333-10 chr7 95570167 95570646 + 1.33333 NA Intergenic L1ME1|LINE|L1 26110 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 321.166-2 chr1 202034603 202034943 + 1.33333 NA Intergenic Intergenic 24186 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 277.833-13 chr8 108757532 108757883 + 1.33333 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 29887 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 368.833 chr15 68154743 68155207 + 1.33333 NA intron (NM_016166, intron 7 of 13) intron (NM_016166, intron 7 of 13) 51135 NM_001286694 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 164-21 chr16 55323735 55323926 + 1.33333 NA promoter-TSS (NM_024335) promoter-TSS (NM_024335) -729 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 266.667-17 chr6 43131917 43132159 + 1.33333 NA exon (NM_001270398, exon 6 of 20) exon (NM_001270398, exon 6 of 20) -39231 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 242.666-11 chr2 46547584 46547843 + 1.33333 NA intron (NM_012249, intron 2 of 4) intron (NM_012249, intron 2 of 4) -5136 NM_001371281 234.833-17 chr22 26660733 26661222 + 1.33333 NA intron (NR_033319, intron 1 of 3) intron (NR_033319, intron 1 of 3) 3495 NR_033320 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript ncRNA 489.333-4 chr19 3987887 3988410 + 1.33333 NA Intergenic AluSx1|SINE|Alu -2685 NM_001961 1938 Hs.515070 NM_001961 ENSG00000167658 EEF2 EEF-2|EF-2|EF2|SCA26 eukaryotic translation elongation factor 2 protein-coding 423.833-6 chr5 14036034 14036701 + 1.33333 NA Intergenic L3b|LINE|CR1 -91887 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 241.501 chr3 43529220 43529497 + 1.33333 NA intron (NM_001346464, intron 12 of 13) L1MC4|LINE|L1 92568 NM_001346467 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 281-2 chr1 6036896 6037243 + 1.33333 NA intron (NM_001199860, intron 1 of 15) intron (NM_001199860, intron 1 of 15) 2381 NM_001199860 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 253.333-26 chr4 65481521 65481775 + 1.33333 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 187840 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 215-25 chr22 19912698 19913012 + 1.33333 NA intron (NR_147957, intron 6 of 16) intron (NR_147957, intron 6 of 16) 19698 NM_001352301 10587 Hs.443430 NM_006440 ENSG00000184470 TXNRD2 GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2 thioredoxin reductase 2 protein-coding 266.666-10 chr8 137356037 137356249 + 1.33333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 57445 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 335.167-4 chr18 21914156 21914529 + 1.33333 NA Intergenic AluSx|SINE|Alu -82936 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 244.667-25 chr5 22973732 22974029 + 1.33333 NA Intergenic L1M5|LINE|L1 -120536 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 326.166-4 chr6 12934847 12935171 + 1.33333 NA intron (NM_001322308, intron 3 of 13) MIR|SINE|MIR -22347 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 285.667-19 chr7 20220233 20220659 + 1.33333 NA intron (NR_134569, intron 3 of 3) intron (NR_134569, intron 3 of 3) 2869 NR_134568 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 227.666-8 chr3 103846328 103846564 + 1.33333 NA Intergenic L1ME3E|LINE|L1 -322330 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 292.333-7 chr13 44300509 44300751 + 1.33333 NA Intergenic Intergenic -73020 NM_001346980 387923 Hs.377972 NM_001010897 ENSG00000151778 SERP2 C13orf21|bA269C23.1 stress associated endoplasmic reticulum protein family member 2 protein-coding 166.667-50 chr8 33532061 33532246 + 1.33333 NA Intergenic AluJr|SINE|Alu 18678 NR_003041 692084 NR_003041 ENSG00000239039 SNORD13 RNU13|SNORD13A|U13 small nucleolar RNA, C/D box 13 snoRNA 235.333-20 chr4 94390683 94390960 + 1.33333 NA Intergenic Intergenic -47985 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 429-4 chr14 39034386 39034911 + 1.33333 NA intron (NM_006364, intron 19 of 19) intron (NM_006364, intron 19 of 19) -68492 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 176.333-18 chr20 45398076 45398336 + 1.33333 NA intron (NR_003189, intron 3 of 5) LTR40c|LTR|ERVL -7787 NM_001197139 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 234.499 chr21 29463384 29463582 + 1.33333 NA Intergenic L1MC4a|LINE|L1 -32564 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 255 chr1 25361275 25361606 + 1.33333 NA TTS (NM_001330430) TTS (NM_001330430) 23106 NM_014313 23585 Hs.705699 NM_014313 ENSG00000183726 TMEM50A IFNRC|SMP1 transmembrane protein 50A protein-coding 202-38 chr8 131733348 131733768 + 1.33333 NA Intergenic L1MCa|LINE|L1 -170535 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 534.667-3 chr7 40219752 40220500 + 1.33333 NA intron (NM_024728, intron 6 of 14) intron (NM_024728, intron 6 of 14) 85150 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 286.666-8 chr3 107758595 107759036 + 1.33333 NA intron (NM_001276286, intron 10 of 16) intron (NM_001276286, intron 10 of 16) 119253 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 255.499-2 chr2 232669334 232669553 + 1.33333 NA intron (NM_025202, intron 2 of 3) intron (NM_025202, intron 2 of 3) -27888 NM_001103146 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 173.666-2 chr2 165353229 165353455 + 1.33333 NA intron (NM_001040143, intron 17 of 27) intron (NM_001040143, intron 17 of 27) 59287 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 280.667-13 chr4 175512841 175513192 + 1.33333 NA Intergenic Intergenic 274660 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 246.333-30 chr5 80495176 80495506 + 1.33333 NA intron (NM_205548, intron 1 of 5) Tigger1|DNA|TcMar-Tigger 7241 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 278.333-10 chr16 48805693 48805950 + 1.33333 NA Intergenic L1MA9|LINE|L1 -195641 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 475.833-8 chrX 83934208 83934825 + 1.33333 NA Intergenic Intergenic 73370 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 466-3 chr2 164697305 164698069 + 1.33333 NA intron (NM_001365671, intron 12 of 15) intron (NM_001365671, intron 12 of 15) -9910 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 266.333-12 chr2 48335389 48335630 + 1.33333 NA intron (NM_002158, intron 2 of 6) L1ME3E|LINE|L1 20827 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 312.999-3 chr5 147454008 147454299 + 1.33333 NA promoter-TSS (NM_001387) promoter-TSS (NM_001387) -461 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 198.666-5 chr7 15985074 15985263 + 1.33333 NA Intergenic Intergenic -225318 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 265.666-5 chr2 109142501 109142793 + 1.33333 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -1059 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 181.333-14 chr18 7984100 7984360 + 1.33333 NA intron (NM_002845, intron 7 of 30) MIRb|SINE|MIR 382804 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 186.5-17 chr2 184364982 184365423 + 1.33333 NA Intergenic Intergenic -13773 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 202.666 chr1 41276385 41276586 + 1.33333 NA Intergenic MIR|SINE|MIR -34179 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 173-36 chr6 106325749 106325963 + 1.33333 NA promoter-TSS (NM_001286107) promoter-TSS (NM_001286107) -36 NM_001286107 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 283.166-2 chr5 39580514 39580821 + 1.33333 NA Intergenic Intergenic 60236 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 224.666-8 chr5 7505755 7506038 + 1.33333 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 109758 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 242.666 chr1 36545462 36545662 + 1.33333 NA Intergenic L1MEc|LINE|L1 -62248 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 167.166-3 chr3 2872183 2872403 + 1.33333 NA intron (NM_175607, intron 8 of 24) intron (NM_175607, intron 8 of 24) -19922 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 342-3 chr17 22701182 22701669 + 1.33333 NA Intergenic L1M4a2|LINE|L1 178314 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 192-16 chr16 76979163 76979393 + 1.33333 NA Intergenic Intergenic 110342 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 282.833-5 chr14 68675227 68675663 + 1.33333 NA intron (NM_001321818, intron 10 of 10) LTR81C|LTR|Gypsy -46658 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 171.333-38 chr4 52948141 52948327 + 1.33333 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 85917 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 251.499 chr11 62694918 62695131 + 1.33333 NA intron (NM_001122955, intron 3 of 10) intron (NM_001122955, intron 3 of 10) -5494 NM_203422 221091 Hs.427449 NM_203422 ENSG00000177363 LRRN4CL - LRRN4 C-terminal like protein-coding 292.166-2 chr12 124518369 124518591 + 1.33333 NA intron (NM_001077261, intron 2 of 47) CpG 49132 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 340.333-14 chr5 121880619 121881046 + 1.33333 NA Intergenic Charlie29a|DNA|hAT-Charlie 28950 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 292.666-3 chr12 19498356 19498654 + 1.33333 NA intron (NM_001114176, intron 4 of 8) intron (NM_001114176, intron 4 of 8) 57906 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 302.333 chr1 209682350 209682648 + 1.33333 NA intron (NR_134510, intron 1 of 2) intron (NR_134510, intron 1 of 2) -3681 NM_181755 3290 Hs.195040 NM_005525 ENSG00000117594 HSD11B1 11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1 hydroxysteroid 11-beta dehydrogenase 1 protein-coding 184.333-45 chr8 132422537 132422821 + 1.33333 NA intron (NM_004519, intron 1 of 14) L2b|LINE|L2 24583 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 310.666 chr1 103110613 103110863 + 1.33333 NA Intergenic Intergenic -2216 NM_080630 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 278.667-7 chr11 127933418 127933921 + 1.33333 NA Intergenic Intergenic -275097 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 251.5-17 chr3 103404058 103404362 + 1.33333 NA Intergenic Intergenic 119906 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 301.666-11 chr2 173850268 173850682 + 1.33333 NA Intergenic Intergenic 113405 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 328.166-4 chr17 29981395 29981833 + 1.33333 NA intron (NR_026738, intron 4 of 15) L2c|LINE|L2 39980 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 221.333-25 chr5 139791934 139792384 + 1.33333 NA Intergenic Intergenic -3649 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 239.667-21 chr17 69341667 69342045 + 1.33333 NA Intergenic Intergenic -14723 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 325.333-6 chr17 75005687 75005994 + 1.33333 NA TTS (NM_014603) TTS (NM_014603) -6830 NM_001545 3396 Hs.407955 NM_001545 ENSG00000167862 MRPL58 DS-1|DS1|ICT1|MRP-L58 mitochondrial ribosomal protein L58 protein-coding 303.666-5 chr7 82795536 82796180 + 1.33333 NA intron (NM_033026, intron 22 of 24) intron (NM_033026, intron 22 of 24) -351902 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 283.833-3 chr18 10081946 10082331 + 1.33333 NA Intergenic Intergenic 168122 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 234.833-11 chr15 95393592 95394028 + 1.33333 NA Intergenic Intergenic -39283 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 371.333-5 chr4 161894965 161895282 + 1.33333 NA intron (NM_001128428, intron 4 of 14) MIRb|SINE|MIR -127610 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 326.333-7 chr4 102069168 102069564 + 1.33333 NA intron (NM_017935, intron 13 of 16) L1ME1|LINE|L1 254946 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 165.5-36 chr5 76107087 76107268 + 1.33333 NA intron (NM_014979, intron 1 of 12) intron (NM_014979, intron 1 of 12) 23794 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 247.333-19 chr4 113573875 113574108 + 1.33333 NA intron (NM_001221, intron 4 of 18) intron (NM_001221, intron 4 of 18) 187747 NM_001321567 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 170-23 chr16 73277579 73277898 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR -109067 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 363.999-3 chr4 156942448 156942855 + 1.33333 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 29148 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 243.667-23 chr2 67476421 67477031 + 1.33333 NA Intergenic Intergenic 79393 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 331-16 chr3 140898476 140898917 + 1.33333 NA Intergenic Intergenic -43140 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 310-26 chr6 167326983 167327431 + 1.33333 NA intron (NM_031949, intron 1 of 2) MER4A|LTR|ERV1 2121 NM_031949 83887 Hs.520554 NM_031949 ENSG00000120440 TTLL2 C6orf104|NYD-TSPG|dJ366N23.3 tubulin tyrosine ligase like 2 protein-coding 217.333-47 chr8 141714154 141714352 + 1.33333 NA Intergenic MIR|SINE|MIR 72060 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 163.667-30 chr2 194920611 194920833 + 1.33333 NA Intergenic MER49|LTR|ERV1 190127 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 360.833-2 chr14 67839242 67839844 + 1.33333 NA intron (NM_133509, intron 4 of 10) L1M5|LINE|L1 15951 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 239.666-3 chr2 65000980 65001212 + 1.33333 NA intron (NM_003038, intron 1 of 7) intron (NM_003038, intron 1 of 7) 11697 NM_003038 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 206-33 chr6 54160827 54161090 + 1.33333 NA intron (NM_001281746, intron 8 of 11) MER112|DNA|hAT-Charlie 49515 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 314.167-6 chr12 106003063 106003767 + 1.33333 NA Intergenic Intergenic 136618 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 311.666-6 chr2 183702573 183702916 + 1.33333 NA Intergenic L1PA16|LINE|L1 578301 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 168-37 chr4 40261801 40262012 + 1.33333 NA Intergenic LTR56|LTR|ERV1 -45279 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 393.999 chr2 57663072 57663544 + 1.33333 NA Intergenic Intergenic -244343 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 256-30 chr8 138222481 138222787 + 1.33333 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -139089 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 169.333-62 chr8 102604303 102604577 + 1.33333 NA Intergenic L2a|LINE|L2 49524 NR_103759 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 224-13 chr14 61798025 61798327 + 1.33333 NA Intergenic Intergenic -13986 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 187.333-32 chr4 91122751 91122915 + 1.33333 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 887802 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 411.666-5 chr9 87340571 87341032 + 1.33333 NA Intergenic Intergenic -156427 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 251-6 chr14 75927279 75927635 + 1.33333 NA intron (NM_015072, intron 31 of 31) intron (NM_015072, intron 31 of 31) 54538 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 407.999-3 chr8 129270657 129271060 + 1.33333 NA Intergenic L2c|LINE|L2 -29618 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 228.666-7 chr4 48392575 48393127 + 1.33333 NA intron (NM_020846, intron 6 of 7) L2a|LINE|L2 51322 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 230.666-6 chr8 61843226 61843521 + 1.33333 NA Intergenic MER4D1|LTR|ERV1 -46466 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 376.333-2 chr11 10002956 10003419 + 1.33333 NA intron (NM_030962, intron 6 of 39) MER47C|DNA|TcMar-Tigger 164045 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 354.333-8 chr4 80367473 80367930 + 1.33333 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 31981 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 259.166-5 chrX 3035713 3035952 + 1.33333 NA Intergenic Intergenic -4402 NM_001201538 416 Hs.101674 NM_004042 ENSG00000062096 ARSF ASF arylsulfatase F protein-coding 267.333-10 chr18 899414 899857 + 1.33333 NA Intergenic Intergenic -5236 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 171-18 chr13 113029713 113029987 + 1.33333 NA intron (NM_001320815, intron 3 of 30) intron (NM_001320815, intron 3 of 30) -14796 NM_001366646 23263 Hs.170422 NM_024979 ENSG00000126217 MCF2L ARHGEF14|DBS|OST MCF.2 cell line derived transforming sequence like protein-coding 378-11 chr19 48978944 48979505 + 1.33333 NA intron (NM_002103, intron 8 of 15) intron (NM_002103, intron 8 of 15) 13915 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 337.333-9 chr4 56307126 56307455 + 1.33333 NA intron (NM_020722, intron 4 of 10) intron (NM_020722, intron 4 of 10) 80201 NM_001323899 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 290.666-5 chr7 106598761 106599314 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR 62121 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 264.666-2 chr1 172743382 172743607 + 1.33333 NA Intergenic Intergenic 84391 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 346.833-9 chr7 74193469 74193818 + 1.33333 NA intron (NM_022170, intron 5 of 6) AluJb|SINE|Alu 2445 NR_030321 693175 NR_030321 ENSG00000207741 MIR590 MIRN590|hsa-mir-590|mir-590 microRNA 590 ncRNA 527.667 chr11 115169954 115170734 + 1.33333 NA 3' UTR (NM_001301043, exon 12 of 12) 3' UTR (NM_001301043, exon 12 of 12) -163233 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 221.666-2 chr11 95695258 95695537 + 1.33333 NA Intergenic LTR81A|LTR|Gypsy 94385 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 244-32 chr7 25671506 25671757 + 1.33333 NA promoter-TSS (NR_157816) promoter-TSS (NR_157816) -900 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 217.333-7 chr10 101941806 101941974 + 1.33333 NA intron (NM_024541, intron 22 of 25) intron (NM_024541, intron 22 of 25) -97970 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 445.333-9 chr4 96651500 96652064 + 1.33333 NA intron (NR_147149, intron 3 of 3) MER5B|DNA|hAT-Charlie 341079 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 298.333-3 chr11 31159781 31160051 + 1.33333 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) -167230 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 370.166 chr12 13669424 13669912 + 1.33333 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -292923 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 217.333-15 chr2 19973592 19973861 + 1.33333 NA intron (NM_001006657, intron 7 of 27) intron (NM_001006657, intron 7 of 27) 16379 NM_020779 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 230.666-3 chr4 176864612 176864942 + 1.33333 NA Intergenic Intergenic -10925 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 406.332 chr17 66108523 66109027 + 1.33333 NA intron (NM_001353129, intron 6 of 26) L1MA3|LINE|L1 83117 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 210-4 chr11 8908234 8908463 + 1.33333 NA intron (NM_005418, intron 1 of 22) intron (NM_005418, intron 1 of 22) 2603 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 214.667-5 chr11 108407974 108408265 + 1.33333 NA intron (NM_001351110, intron 2 of 8) L1PA10|LINE|L1 59410 NM_001330368 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 238.167-28 chr8 102266945 102267437 + 1.33333 NA intron (NM_001282873, intron 51 of 58) intron (NM_001282873, intron 51 of 58) 27740 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 173.667-18 chr14 90740156 90740637 + 1.33333 NA intron (NM_001320421, intron 4 of 20) intron (NM_001320421, intron 4 of 20) 43063 NR_135190 105370622 Hs.662373 NR_135190 ENSG00000258716 LOC105370622 - uncharacterized LOC105370622 ncRNA 253.5-21 chr3 118636854 118637281 + 1.33333 NA intron (NR_135547, intron 2 of 3) intron (NR_135547, intron 2 of 3) -4701 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 322.666 chr10 59999313 59999578 + 1.33333 NA Intergenic Intergenic -38532 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 422.499 chr10 94963794 94964393 + 1.33333 NA intron (NM_000771, intron 5 of 8) L1PA16|LINE|L1 25435 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 405.333-11 chr6 46429666 46430110 + 1.33333 NA intron (NM_001251973, intron 2 of 4) L2a|LINE|L2 61435 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 268.833-12 chr2 201170965 201171167 + 1.33333 NA non-coding (NR_147249, exon 10 of 10) non-coding (NR_147249, exon 10 of 10) -11832 NM_032977 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 223.333-24 chr2 124606008 124606181 + 1.33333 NA intron (NM_130773, intron 11 of 23) HAL1|LINE|L1 580807 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 226.333-24 chr5 169008237 169008494 + 1.33333 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -4862 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 322.666-5 chr15 49386338 49386751 + 1.33333 NA intron (NM_152647, intron 11 of 15) L1PB3|LINE|L1 -36698 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 203.166-2 chr2 107352963 107353232 + 1.33333 NA Intergenic L1PA17|LINE|L1 -3572 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 245.333-19 chr2 219167621 219167937 + 1.33333 NA intron (NM_001144890, intron 7 of 11) intron (NM_001144890, intron 7 of 11) 2250 NM_144712 151295 Hs.124565 NM_144712 ENSG00000213901 SLC23A3 E2BP3|SVCT3|Yspl1 solute carrier family 23 member 3 protein-coding 165.666-4 chr4 30720395 30720772 + 1.33333 NA 5' UTR (NM_032456, exon 1 of 1) 5' UTR (NM_032456, exon 1 of 1) 214 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 310-9 chr12 23724470 23724813 + 1.33333 NA intron (NM_152989, intron 9 of 17) intron (NM_152989, intron 9 of 17) -140055 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 285.833-17 chr7 31124471 31124882 + 1.33333 NA Intergenic AluJb|SINE|Alu 72215 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 203.333-46 chr4 109067942 109068124 + 1.33333 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 234625 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 264-28 chr6 142901099 142901336 + 1.33333 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 43959 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 187.833-22 chr6 16770920 16771180 + 1.33333 NA Intergenic Intergenic -9560 NM_001128164 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 202-26 chr21 30066997 30067176 + 1.33333 NA Intergenic L1MEb|LINE|L1 99719 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 247.333-4 chr12 49215097 49215296 + 1.33333 NA Intergenic Intergenic -12730 NM_001303114 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 206.5-60 chr9 1005258 1005667 + 1.33333 NA Intergenic Intergenic 28807 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 213.333-46 chr8 79323648 79323953 + 1.33333 NA Intergenic Intergenic -8388 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 183-36 chr5 44088404 44088632 + 1.33333 NA Intergenic Intergenic -300214 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 357.166-5 chr8 59829565 59830084 + 1.33333 NA Intergenic Intergenic 451576 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 183.833-3 chr10 32027404 32027561 + 1.33333 NA intron (NM_004521, intron 15 of 25) L1MC5|LINE|L1 28943 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 294.333-6 chr15 89167717 89168020 + 1.33333 NA intron (NM_007011, intron 9 of 14) intron (NM_007011, intron 9 of 14) 53711 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 331-13 chr18 7918795 7919294 + 1.33333 NA intron (NM_002845, intron 4 of 30) L1MA4|LINE|L1 351728 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 209.167-25 chr4 139453143 139453421 + 1.33333 NA promoter-TSS (NM_031296) promoter-TSS (NM_031296) 759 NR_159963 107984036 Hs.605782 NR_159963 LOC107984036 - uncharacterized LOC107984036 ncRNA 237.833-3 chr12 112061155 112061523 + 1.33333 NA exon (NM_024953, exon 12 of 24) exon (NM_024953, exon 12 of 24) -23624 NR_037430 100500889 NR_037430 ENSG00000266370 MIR3657 - microRNA 3657 ncRNA 196.5-5 chr10 56276165 56276332 + 1.33333 NA Intergenic L1PA5|LINE|L1 85011 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 276.333-10 chr5 124142381 124142784 + 1.33333 NA intron (NR_125774, intron 4 of 5) L1MD1|LINE|L1 295938 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 236.667-19 chr3 56549628 56549849 + 1.33333 NA Intergenic Intergenic -7418 NR_148374 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 324.001-3 chr2 212548059 212548552 + 1.33333 NA Intergenic Intergenic -9503 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 239.833-15 chr6 133018692 133018928 + 1.33333 NA Intergenic L1ME3B|LINE|L1 -69270 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 180.5-29 chr4 79075159 79075394 + 1.33333 NA intron (NR_038342, intron 2 of 5) L1ME1|LINE|L1 103528 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 183-19 chr15 95216625 95216865 + 1.33333 NA Intergenic L1ME3A|LINE|L1 110355 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 290.5-12 chr2 9129214 9129838 + 1.33333 NA Intergenic MER119|DNA|hAT-Charlie -77239 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 215.667-3 chr10 53979314 53979623 + 1.33333 NA intron (NM_001354411, intron 22 of 34) THE1C|LTR|ERVL-MaLR -506762 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 323.166-6 chr6 36581105 36581630 + 1.33333 NA Intergenic SVA_B|Retroposon|SVA -12946 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 191.666-8 chr20 21528053 21528387 + 1.33333 NA Intergenic X6A_LINE|LINE|CR1 -14156 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 212.166-3 chr16 69682654 69682891 + 1.33333 NA intron (NM_001113178, intron 10 of 14) intron (NM_001113178, intron 10 of 14) 25903 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 217-32 chr7 38056405 38057000 + 1.33333 NA Intergenic L1M5|LINE|L1 -121543 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 244-10 chr2 37712134 37712456 + 1.33333 NA Intergenic L1ME2z|LINE|L1 -39760 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 324.833-7 chr4 88020268 88020568 + 1.33333 NA intron (NR_156488, intron 2 of 13) intron (NR_156488, intron 2 of 13) 12783 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 269.5-14 chr20 58372129 58372455 + 1.33333 NA Intergenic Intergenic -16827 NM_004738 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 184-33 chr22 50331359 50331550 + 1.33333 NA Intergenic L1MB8|LINE|L1 -4442 NM_001001794 414918 Hs.530380 NM_001001794 ENSG00000205593 DENND6B AFI1B|FAM116B DENN domain containing 6B protein-coding 287 chr1 167936103 167936589 + 1.33333 NA promoter-TSS (NM_001198957) promoter-TSS (NM_001198957) 107 NM_001349774 55827 Hs.435741 NM_018442 ENSG00000143164 DCAF6 1200006M05Rik|ARCAP|IQWD1|MSTP055|NRIP|PC326 DDB1 and CUL4 associated factor 6 protein-coding 210-45 chr8 119418062 119418372 + 1.33333 NA exon (NM_002514, exon 3 of 5) exon (NM_002514, exon 3 of 5) 1771 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 270-24 chr20 49535784 49536340 + 1.33333 NA intron (NM_000961, intron 5 of 9) intron (NM_000961, intron 5 of 9) 32075 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 260.333-12 chr2 240146073 240146368 + 1.33333 NA Intergenic Intergenic -5562 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 234.666-9 chr6 159701211 159701680 + 1.33333 NA intron (NM_001322817, intron 3 of 7) AluJr|SINE|Alu -8117 NM_001322816 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 206.5-59 chr8 133325455 133325716 + 1.33333 NA Intergenic MLT1J|LTR|ERVL-MaLR -28281 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 304.333-11 chr5 54759394 54759787 + 1.33333 NA Intergenic LTR33|LTR|ERVL -15332 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 249.167-25 chr7 42315954 42316205 + 1.33333 NA Intergenic Intergenic -78870 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 311-11 chr20 14145348 14145741 + 1.33333 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 150028 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 233.833-10 chr19 11288317 11288512 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -7746 NM_012466 26526 Hs.579784 NM_012466 ENSG00000130167 TSPAN16 TM-8|TM4-B|TM4SF16 tetraspanin 16 protein-coding 307.333-12 chr5 123618698 123619119 + 1.33333 NA Intergenic Cheshire|DNA|hAT-Charlie 73491 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 181.333-10 chr16 87461644 87461865 + 1.33333 NA intron (NM_015144, intron 1 of 12) intron (NM_015144, intron 1 of 12) 30100 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 312.999-4 chrX 114749949 114750371 + 1.33333 NA intron (NM_001256760, intron 5 of 6) intron (NM_001256760, intron 5 of 6) -13024 NR_031732 100302222 NR_031732 ENSG00000222715 MIR1911 MIRN1911|hsa-mir-1911|mir-1911 microRNA 1911 ncRNA 179.333-8 chr12 14811729 14811904 + 1.33333 NA intron (NM_001013698, intron 1 of 1) intron (NM_001013698, intron 1 of 1) 2366 NM_001013698 440087 Hs.220931 NM_001013698 ENSG00000179256 SMCO3 C12orf69 single-pass membrane protein with coiled-coil domains 3 protein-coding 199-53 chr8 74410546 74410810 + 1.33333 NA intron (NM_001362931, intron 5 of 5) MER99|DNA|hAT? 60275 NM_018972 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 266.333-4 chr1 191340410 191340811 + 1.33333 NA Intergenic MIRc|SINE|MIR -112112 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 270.333-12 chr4 109099210 109099603 + 1.33333 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 203252 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 250-3 chr12 24485297 24485560 + 1.33333 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 77063 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 247.5-21 chr2 55602388 55602747 + 1.33333 NA intron (NM_020463, intron 3 of 14) MER77|LTR|ERVL 15055 NM_020463 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 246.166 chr13 96084964 96085327 + 1.33333 NA Intergenic MamGypLTR2c|LTR|Gypsy -5694 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 274.5-19 chr3 129278624 129278876 + 1.33333 NA promoter-TSS (NM_001370345) promoter-TSS (NM_001370345) -82 NM_001370345 56941 Hs.458320 NM_020187 ENSG00000183624 HMCES C3orf37|DC12|SRAPD1 5-hydroxymethylcytosine binding, ES cell specific protein-coding 204.333-41 chr5 154514060 154514302 + 1.33333 NA Intergenic L1MB2|LINE|L1 -35954 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 181-13 chr15 62073413 62073589 + 1.33333 NA Intergenic L1MCb|LINE|L1 6524 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 171.333-43 chr5 127959471 127959608 + 1.33333 NA intron (NR_152813, intron 2 of 3) intron (NR_152813, intron 2 of 3) 123636 NR_152814 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 559.833 chr11 63767552 63768261 + 1.33333 NA intron (NM_001144936, intron 1 of 4) intron (NM_001144936, intron 1 of 4) 869 NM_001144936 65998 Hs.191073 NM_001144936 ENSG00000188070 C11orf95 - chromosome 11 open reading frame 95 protein-coding 256.833-9 chr2 166821891 166822107 + 1.33333 NA Intergenic L1MD3|LINE|L1 -66488 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 341.667-2 chr10 43202292 43202593 + 1.33333 NA intron (NM_145313, intron 3 of 12) CpG 27297 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 596.833 chr12 7677310 7678296 + 1.33333 NA Intergenic AluSx1|SINE|Alu -7204 NM_001304566 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 235.167-31 chr8 91069635 91069887 + 1.33333 NA promoter-TSS (NM_016023) promoter-TSS (NM_016023) 428 NR_110438 100506365 Hs.153412 NR_110438 ENSG00000253738 OTUD6B-AS1 GS1-251I9.4 OTUD6B antisense RNA 1 (head to head) ncRNA 186.333-24 chr2 162889129 162889302 + 1.33333 NA Intergenic Intergenic -50448 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 252.834-4 chr12 32743261 32743510 + 1.33333 NA exon (NM_012062, exon 20 of 20) exon (NM_012062, exon 20 of 20) 12512 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 300.333-7 chr3 157499558 157499984 + 1.33333 NA promoter-TSS (NM_024621) promoter-TSS (NM_024621) -115 NM_024621 79674 Hs.658046 NM_024621 ENSG00000197415 VEPH1 MELT|VEPH ventricular zone expressed PH domain containing 1 protein-coding 286.667-17 chr4 58209161 58209563 + 1.33333 NA Intergenic Intergenic 326966 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 180.667-27 chr2 122971652 122971902 + 1.33333 NA Intergenic L2|LINE|L2 101704 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 190.334-6 chr4 36130742 36131000 + 1.33333 NA intron (NR_146894, intron 20 of 32) intron (NR_146894, intron 20 of 32) 113068 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 323.333-5 chr10 73252711 73253364 + 1.33333 NA promoter-TSS (NM_016065) promoter-TSS (NM_016065) 296 NR_134458 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 421.5-3 chr6 52724183 52724872 + 1.33333 NA Intergenic Intergenic 20632 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 375.833-7 chr8 36777460 36778030 + 1.33333 NA Intergenic Intergenic -6629 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 241-17 chr3 87260407 87260876 + 1.33333 NA intron (NM_001122757, intron 5 of 5) intron (NM_001122757, intron 5 of 5) 15943 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 507-2 chr14 20636887 20637459 + 1.33333 NA Intergenic L2|LINE|L2 4518 NM_001001968 341799 Hs.513132 NM_001001968 ENSG00000181803 OR6S1 OR14-37|OR6S1Q olfactory receptor family 6 subfamily S member 1 protein-coding 265.5-14 chr2 35157957 35158272 + 1.33333 NA Intergenic Intergenic -313291 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 240.666-9 chr6 50925115 50925359 + 1.33333 NA Intergenic MIR3|SINE|MIR 106366 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 329.999 chr10 58224747 58225085 + 1.33333 NA intron (NM_152230, intron 3 of 5) intron (NM_152230, intron 3 of 5) 42978 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 290.833-11 chr7 95562848 95563352 + 1.33333 NA Intergenic L1MA7|LINE|L1 33416 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 166-36 chr18 7911030 7911220 + 1.33333 NA intron (NM_002845, intron 4 of 30) L1MB8|LINE|L1 343809 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 213.5-2 chr1 227762940 227763163 + 1.33333 NA intron (NR_136657, intron 2 of 3) AluJo|SINE|Alu 27356 NM_001323934 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 293.333-17 chr6 52995696 52996056 + 1.33333 NA promoter-TSS (NM_001512) promoter-TSS (NM_001512) 256 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 184-42 chr5 145111764 145111925 + 1.33333 NA Intergenic Intergenic 723498 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 176.667-21 chr17 71843650 71843898 + 1.33333 NA Intergenic Intergenic 182205 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 301.333-18 chr5 30554630 30555025 + 1.33333 NA Intergenic Intergenic -638859 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 216.666-5 chr22 22167586 22167780 + 1.33333 NA Intergenic Intergenic -77103 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 243.333-43 chr8 119396854 119397156 + 1.33333 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -19441 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 308.833-10 chr2 57791322 57791758 + 1.33333 NA Intergenic L1MA1|LINE|L1 -116111 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 228.667-35 chr4 151801748 151802043 + 1.33333 NA Intergenic Intergenic -40872 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 340.499 chr1 160954172 160954647 + 1.33333 NA exon (NM_080878, exon 2 of 8) exon (NM_080878, exon 2 of 8) 400 NM_080878 142683 Hs.385631 NM_080878 ENSG00000158764 ITLN2 HL-2|HL2 intelectin 2 protein-coding 283.667-8 chr22 39308540 39309014 + 1.33333 NA Intergenic Intergenic 5134 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 229.167-13 chr16 58121895 58122324 + 1.33333 NA intron (NM_013242, intron 1 of 5) intron (NM_013242, intron 1 of 5) 7272 NM_013242 29105 Hs.532755 NM_013242 ENSG00000070761 CFAP20 BUG22|C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 390.667-6 chr9 136488354 136489038 + 1.33333 NA Intergenic MIRb|SINE|MIR -4937 NM_001276418 9919 Hs.522500 NM_014866 ENSG00000148396 SEC16A KIAA0310|SEC16L|p250 SEC16 homolog A, endoplasmic reticulum export factor protein-coding 279.333-10 chr19 28354848 28355168 + 1.33333 NA Intergenic MER1A|DNA|hAT-Charlie -251680 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 285.666-7 chr2 83214012 83214385 + 1.33333 NA Intergenic Intergenic -308616 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 184-50 chr7 88860666 88860882 + 1.33333 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -65037 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 234-21 chr2 64055138 64055537 + 1.33333 NA Intergenic L1ME5|LINE|L1 -35909 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 259.334-5 chr5 159316949 159317221 + 1.33333 NA intron (NM_002187, intron 6 of 7) intron (NM_002187, intron 6 of 7) 13388 NM_002187 3593 Hs.674 NM_002187 ENSG00000113302 IL12B CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2 interleukin 12B protein-coding 233.833-7 chr12 57759633 57759897 + 1.33333 NA 3' UTR (NM_138396, exon 4 of 4) 3' UTR (NM_138396, exon 4 of 4) 4662 NM_138396 92979 Hs.632709 NM_138396 ENSG00000139266 MARCH9 MARCH-IX|RNF179 membrane associated ring-CH-type finger 9 protein-coding 734.999 chr11 67629166 67629797 + 1.33333 NA intron (NM_181843, intron 1 of 2) CpG 456 NM_001243750 254552 Hs.433329 NM_181843 ENSG00000167799 NUDT8 - nudix hydrolase 8 protein-coding 266-7 chr15 37857782 37858270 + 1.33333 NA Intergenic Intergenic -76581 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 399.001 chr4 2876822 2877451 + 1.33333 NA intron (NM_014190, intron 2 of 15) intron (NM_014190, intron 2 of 15) 32986 NM_001286645 118 Hs.183706 NM_001119 ENSG00000087274 ADD1 ADDA adducin 1 protein-coding 190-26 chr18 41906591 41906998 + 1.33333 NA Intergenic Intergenic -48440 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 318-19 chr6 49676949 49677282 + 1.33333 NA Intergenic LTR26|LTR|ERV1 36428 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 328.166-6 chr3 112517921 112518215 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -18596 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 171.833-10 chr17 65190859 65190991 + 1.33333 NA intron (NM_003835, intron 11 of 18) intron (NM_003835, intron 11 of 18) 53555 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 167.666-7 chr3 194145173 194145336 + 1.33333 NA Intergenic Intergenic 9106 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 216.833-20 chr4 58252882 58253222 + 1.33333 NA Intergenic Intergenic 283276 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 326.167-10 chr5 19816430 19816997 + 1.33333 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 69559 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 262-18 chr4 32501191 32501634 + 1.33333 NA Intergenic L1MB8|LINE|L1 150374 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 378.999 chr2 58680590 58680999 + 1.33333 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 160041 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 173.5-19 chr14 36128176 36128414 + 1.33333 NA intron (NR_073454, intron 1 of 2) L1M5|LINE|L1 48356 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 236-31 chr8 144208362 144208654 + 1.33333 NA intron (NM_001288814, intron 11 of 41) MLT1C|LTR|ERVL-MaLR 54229 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 335.666 chr13 54010346 54010695 + 1.33333 NA Intergenic L1M5|LINE|L1 122351 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 183.333-14 chr11 115461199 115461442 + 1.33333 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 43095 NM_014333 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 285.333-5 chr12 14756235 14756486 + 1.33333 NA Intergenic Intergenic 14771 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 250.833-7 chr13 108322427 108322621 + 1.33333 NA Intergenic Intergenic 52895 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 328.166-2 chr10 50936556 50936812 + 1.33333 NA Intergenic Intergenic -51009 NM_138932 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 267-17 chr15 60369568 60369988 + 1.33333 NA intron (NM_001002857, intron 4 of 13) intron (NM_001002857, intron 4 of 13) 28208 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 316.5-24 chr7 91857594 91857843 + 1.33333 NA Intergenic L1PA17|LINE|L1 22984 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 193.334-8 chr3 14182258 14182431 + 1.33333 NA intron (NM_014463, intron 2 of 3) intron (NM_014463, intron 2 of 3) 3527 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 259-34 chr5 170744202 170744682 + 1.33333 NA Intergenic Intergenic -39277 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 383.167-6 chr20 44092986 44093561 + 1.33333 NA Intergenic Intergenic 93915 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 409.666 chr10 28666004 28667031 + 1.33333 NA Intergenic Intergenic -11004 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 385.333-7 chr3 169783166 169783684 + 1.33333 NA intron (NR_033703, intron 5 of 7) intron (NR_033703, intron 5 of 7) 9160 NM_001185119 55892 Hs.507025 NM_018657 ENSG00000085274 MYNN OSZF|SBBIZ1|ZBTB31|ZNF902 myoneurin protein-coding 382-9 chr3 127590497 127590928 + 1.33333 NA promoter-TSS (NM_001353002) promoter-TSS (NM_001353002) 21 NM_001142646 131601 Hs.6418 NM_016372 ENSG00000163870 TPRA1 GPR175|TMEM227|TPRA40 transmembrane protein adipocyte associated 1 protein-coding 382-4 chr14 22106980 22107538 + 1.33333 NA Intergenic Intergenic 325494 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 284.833 chr1 7975179 7975472 + 1.33333 NA intron (NM_001123377, intron 5 of 6) intron (NM_001123377, intron 5 of 6) 13614 NM_007262 11315 Hs.419640 NM_007262 ENSG00000116288 PARK7 DJ-1|DJ1|GATD2|HEL-S-67p Parkinsonism associated deglycase protein-coding 423.833 chr1 240242727 240243217 + 1.33333 NA intron (NM_020066, intron 6 of 17) intron (NM_020066, intron 6 of 17) 151089 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 189-29 chr22 26037567 26037820 + 1.33333 NA Intergenic Intergenic -131769 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 346.333-2 chr1 48052629 48053046 + 1.33333 NA Intergenic Intergenic -55452 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 351-13 chr6 27724360 27724695 + 1.33333 NA Intergenic L1MEc|LINE|L1 30448 NR_038292 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 656.167-2 chr19 3472748 3473422 + 1.33333 NA TTS (NM_001136503) TTS (NM_001136503) 7440 NM_001136503 284422 Hs.130714 NM_001136503 ENSG00000095932 SMIM24 C19orf77|HSPC323|MARDI small integral membrane protein 24 protein-coding 291.166-2 chr1 215911814 215912125 + 1.33333 NA intron (NM_206933, intron 38 of 71) L1MA1|LINE|L1 -160496 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 329.666-2 chr10 76576790 76577136 + 1.33333 NA Intergenic Intergenic -311081 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 248.333-35 chr9 116167059 116167353 + 1.33333 NA intron (NM_002581, intron 1 of 21) MER2|DNA|TcMar-Tigger 13415 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 246.166-4 chr3 50350848 50351119 + 1.33333 NA promoter-TSS (NM_006545) promoter-TSS (NM_006545) 121 NM_001291284 11068 Hs.149443 NM_007022 ENSG00000114395 CYB561D2 101F6|TSP10|XXcos-LUCA11.4 cytochrome b561 family member D2 protein-coding 313.333-21 chr8 130160584 130160941 + 1.33333 NA intron (NM_018482, intron 11 of 29) intron (NM_018482, intron 11 of 29) -75994 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 377.499-2 chr14 47555300 47555788 + 1.33333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 119410 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 272.333-18 chr9 36024629 36024884 + 1.33333 NA Intergenic Intergenic -12157 NM_001316348 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 181.666-8 chrX 41089444 41089668 + 1.33333 NA intron (NM_001039591, intron 1 of 44) intron (NM_001039591, intron 1 of 44) 4111 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 238.667-17 chr4 148626422 148626756 + 1.33333 NA Intergenic L1MB1|LINE|L1 -181891 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 308.166-9 chr3 180787659 180787975 + 1.33333 NA intron (NR_109986, intron 3 of 13) L1ME3B|LINE|L1 82361 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 183.333-64 chr8 80083213 80083486 + 1.33333 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) -2518 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 326-3 chr15 79337988 79338545 + 1.33333 NA intron (NM_001330376, intron 2 of 2) L1ME3Cz|LINE|L1 27154 NM_007364 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 368.332 chr1 106783170 106783464 + 1.33333 NA Intergenic Intergenic -34922 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 320.667-4 chr10 34405261 34405544 + 1.33333 NA intron (NM_001184791, intron 4 of 20) intron (NM_001184791, intron 4 of 20) 409894 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 508.499-2 chr3 99684532 99685056 + 1.33333 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) 46200 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 239.333-37 chr8 122780299 122780680 + 1.33333 NA Intergenic CpG -1166 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 404.666-3 chr14 70256418 70257045 + 1.33333 NA Intergenic Intergenic -8930 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 334.666-2 chr1 40868100 40868510 + 1.33333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -5942 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 269.999 chr12 8950886 8951111 + 1.33333 NA intron (NR_137427, intron 1 of 2) intron (NR_137427, intron 1 of 2) 954 NM_001329102 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 164-32 chr2 30379422 30379631 + 1.33333 NA Intergenic MIRb|SINE|MIR 32880 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 628.666-2 chr14 34982328 34982952 + 1.33333 NA promoter-TSS (NR_151701) promoter-TSS (NR_151701) -74 NR_151701 100506157 NR_151701 SRP54-AS1 - SRP54 antisense RNA 1 (head to head) ncRNA 458.666-4 chr5 162819843 162820301 + 1.33333 NA Intergenic Intergenic -617499 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 210-34 chr5 10670629 10670860 + 1.33333 NA Intergenic Intergenic 90490 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 368.999 chr20 58786939 58787400 + 1.33333 NA Intergenic Intergenic 13744 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 378.333-6 chr16 48587937 48588241 + 1.33333 NA intron (NM_153029, intron 1 of 6) LTR37-int|LTR|ERV1 22091 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 275-17 chr2 147062424 147062813 + 1.33333 NA Intergenic L2b|LINE|L2 475561 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 296.666-10 chr5 111064344 111064707 + 1.33333 NA Intergenic Intergenic -5555 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 272-11 chr10 32173950 32174368 + 1.33333 NA Intergenic AluSx1|SINE|Alu -117734 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 294.333-11 chr20 3563516 3563816 + 1.33333 NA intron (NM_001207047, intron 10 of 24) intron (NM_001207047, intron 10 of 24) 92648 NM_139322 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 390.999 chr2 132989476 132989822 + 1.33333 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 74092 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 229-21 chr4 20590548 20590928 + 1.33333 NA intron (NM_001289135, intron 29 of 35) intron (NM_001289135, intron 29 of 35) 62463 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 347.333-6 chr14 21258903 21259197 + 1.33333 NA intron (NM_001077442, intron 1 of 7) L2a|LINE|L2 10429 NM_031314 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 219.333-32 chr5 5279924 5280250 + 1.33333 NA intron (NM_139056, intron 18 of 22) intron (NM_139056, intron 18 of 22) 139757 NR_136935 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 416.333-6 chr5 59275218 59275605 + 1.33333 NA 5' UTR (NM_001197220, exon 1 of 15) 5' UTR (NM_001197220, exon 1 of 15) 704 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 334.666-7 chr4 84932740 84933092 + 1.33333 NA intron (NM_014991, intron 1 of 67) intron (NM_014991, intron 1 of 67) -32700 NR_152773 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 223.166-5 chr7 55642238 55642522 + 1.33333 NA Intergenic Intergenic 45652 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 225.333-36 chr8 81639572 81639793 + 1.33333 NA Intergenic L1MA3|LINE|L1 -8405 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 305.166-2 chr22 36423801 36424210 + 1.33333 NA Intergenic Intergenic -35938 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 460.833-4 chr4 124059329 124060002 + 1.33333 NA Intergenic Intergenic 285401 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 180.667-31 chr3 95873116 95873322 + 1.33333 NA Intergenic Intergenic -190026 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 200.666-2 chr11 55693577 55693818 + 1.33333 NA Intergenic Intergenic 28530 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 309.333-14 chr4 41383723 41384019 + 1.33333 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 23064 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 220-24 chr5 74766377 74766710 + 1.33333 NA promoter-TSS (NM_001364506) promoter-TSS (NM_001364506) 574 NM_001281302 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 210.333-20 chr2 220347855 220348199 + 1.33333 NA Intergenic Intergenic -441462 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 194.833-19 chr2 103274721 103275043 + 1.33333 NA Intergenic Intergenic -290453 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 225-6 chr11 120303239 120303448 + 1.33333 NA intron (NM_001244682, intron 6 of 12) MIR3|SINE|MIR -21956 NM_001198675 219902 Hs.643516 NM_174926 ENSG00000181264 TLCD5 TMEM136 TLC domain containing 5 protein-coding 251-21 chr22 32053003 32053251 + 1.33333 NA intron (NM_000343, intron 2 of 14) intron (NM_000343, intron 2 of 14) -6043 NM_001256314 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 199.666-3 chr14 38060273 38060448 + 1.33333 NA Intergenic Intergenic -147544 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 175-17 chr14 68718507 68718984 + 1.33333 NA Intergenic MIR3|SINE|MIR 75169 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 199.333-21 chr17 49368506 49368839 + 1.33333 NA intron (NR_110883, intron 2 of 4) intron (NR_110883, intron 2 of 4) -6199 NM_014897 22834 Hs.463375 NM_014897 ENSG00000198740 ZNF652 - zinc finger protein 652 protein-coding 255.5-13 chr14 52615693 52616012 + 1.33333 NA intron (NM_001353361, intron 4 of 7) intron (NM_001353361, intron 4 of 7) 63016 NM_001353361 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 268.666-9 chr8 120083887 120084202 + 1.33333 NA Intergenic Intergenic -41058 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 402.334-3 chr14 73950577 73951069 + 1.33333 NA promoter-TSS (NM_152445) promoter-TSS (NM_152445) 521 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 211.333-5 chr10 31379730 31379904 + 1.33333 NA intron (NM_001323638, intron 4 of 12) L1MC5a|LINE|L1 19938 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 277-22 chr5 37204741 37205105 + 1.33333 NA intron (NM_023073, intron 18 of 51) AluSx|SINE|Alu -44123 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 292.333-15 chr22 32474587 32474983 + 1.33333 NA promoter-TSS (NM_012179) promoter-TSS (NM_012179) -26 NM_012179 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 266.333 chr1 7101490 7101759 + 1.33333 NA intron (NM_001349608, intron 3 of 21) intron (NM_001349608, intron 3 of 21) 288130 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 176.666-5 chr20 17591893 17592127 + 1.33333 NA 5' UTR (NM_001011546, exon 2 of 5) 5' UTR (NM_001011546, exon 2 of 5) 21935 NM_006870 11034 Hs.304192 NM_006870 ENSG00000125868 DSTN ACTDP|ADF|HEL32|bA462D18.2 destrin, actin depolymerizing factor protein-coding 414.667-3 chr12 11651889 11652293 + 1.33333 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 2237 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 477.166 chr8 99358471 99359217 + 1.33333 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 177886 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 448.499 chr2 181954485 181955140 + 1.33333 NA intron (NR_048567, intron 1 of 4) intron (NR_048567, intron 1 of 4) 571 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 254.666-7 chr5 41009733 41010002 + 1.33333 NA intron (NM_173489, intron 31 of 41) intron (NM_173489, intron 31 of 41) 61475 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 507.166-5 chr8 106434970 106435807 + 1.33333 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -12536 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 316.667-7 chr20 44575532 44576141 + 1.33333 NA intron (NM_007066, intron 1 of 3) intron (NM_007066, intron 1 of 3) -6743 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 378.5-4 chr14 79011518 79012267 + 1.33333 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -188090 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 264.833-17 chr20 24461549 24461863 + 1.33333 NA Intergenic Intergenic -7493 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 254.333-3 chr10 75545716 75546066 + 1.33333 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -6567 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 335.667-2 chr11 8092591 8093074 + 1.33333 NA TTS (NR_144485) TTS (NR_144485) 11470 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 231.999-2 chr2 77763122 77763361 + 1.33333 NA intron (NR_110288, intron 3 of 3) intron (NR_110288, intron 3 of 3) -152693 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 287.333-17 chr7 7932964 7933515 + 1.33333 NA Intergenic Intergenic 35513 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 189.167 chr1 52365941 52366238 + 1.33333 NA 5' UTR (NM_001330585, exon 1 of 25) 5' UTR (NM_001330585, exon 1 of 25) 116 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 240-3 chr1 238273248 238273537 + 1.33333 NA Intergenic Intergenic 212625 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 177-27 chr4 55671178 55671310 + 1.33333 NA Intergenic MIR1_Amn|SINE|MIR -34451 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 178.666-4 chr22 30127799 30127980 + 1.33333 NA intron (NM_001329457, intron 11 of 11) L2|LINE|L2 47425 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 323.333-12 chr17 81567102 81567702 + 1.33333 NA promoter-TSS (NR_130140) promoter-TSS (NR_130140) -800 NR_130140 55666 Hs.464333 NM_017921 ENSG00000182446 NPLOC4 NPL4 NPL4 homolog, ubiquitin recognition factor protein-coding 294-23 chr9 83317945 83318292 + 1.33333 NA intron (NM_001244960, intron 6 of 13) intron (NM_001244960, intron 6 of 13) 13843 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 224.333-27 chr3 192138036 192138234 + 1.33333 NA Intergenic Intergenic -100495 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 410.833-5 chr3 110302209 110302618 + 1.33333 NA Intergenic AluSg|SINE|Alu 699585 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 335.333-6 chr20 6764852 6765221 + 1.33333 NA Intergenic Intergenic -2650 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 244-26 chr5 19213170 19213434 + 1.33333 NA Intergenic L1MA3|LINE|L1 672970 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 336.666 chr1 48218048 48218533 + 1.33333 NA Intergenic L1MB3|LINE|L1 -4426 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 322.667-17 chr22 27475234 27475775 + 1.33333 NA Intergenic Intergenic 164853 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 180.666-6 chr8 138820528 138820727 + 1.33333 NA intron (NM_152888, intron 7 of 64) intron (NM_152888, intron 7 of 64) 93414 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 400.5 chr1 225396509 225396949 + 1.33333 NA intron (NM_001367479, intron 84 of 85) intron (NM_001367479, intron 84 of 85) 31309 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 196-21 chr2 96685265 96685747 + 1.33333 NA intron (NM_001293083, intron 21 of 52) intron (NM_001293083, intron 21 of 52) 42742 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 236.333-18 chr22 48176609 48176864 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR -97628 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 273.333-15 chr4 171829793 171830079 + 1.33333 NA intron (NM_001034845, intron 2 of 12) MLT1D|LTR|ERVL-MaLR -16329 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 225.666-6 chr9 33452092 33452452 + 1.33333 NA Intergenic Intergenic -4679 NM_004925 360 Hs.234642 NM_004925 ENSG00000165272 AQP3 AQP-3|GIL aquaporin 3 (Gill blood group) protein-coding 187.167-20 chr20 58623785 58624157 + 1.33333 NA Intergenic Intergenic -10801 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 283-27 chr9 15211250 15211575 + 1.33333 NA intron (NM_001168341, intron 2 of 17) intron (NM_001168341, intron 2 of 17) 38806 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 333.333-9 chr20 14061582 14062052 + 1.33333 NA intron (NM_001351663, intron 2 of 17) intron (NM_001351663, intron 2 of 17) 66301 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 196.333-13 chr14 37254021 37254353 + 1.33333 NA intron (NM_138731, intron 4 of 13) intron (NM_138731, intron 4 of 13) 56250 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 285.666-2 chr1 115796215 115796578 + 1.33333 NA Intergenic Intergenic -27591 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 315-3 chr13 109023658 109024080 + 1.33333 NA intron (NM_015011, intron 23 of 34) (TA)n|Simple_repeat|Simple_repeat 143434 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 249.333-25 chr4 173334392 173334913 + 1.33333 NA promoter-TSS (NM_001130689) promoter-TSS (NM_001130689) -294 NM_002129 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 201.833-18 chr8 64247406 64247677 + 1.33333 NA intron (NR_125826, intron 1 of 4) MER5A|DNA|hAT-Charlie 121017 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 248.667-11 chr16 66454294 66454605 + 1.33333 NA intron (NM_001178020, intron 2 of 4) L1ME3A|LINE|L1 21953 NR_109960 101927726 Hs.739193 NR_109960 ENSG00000261656 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 339.167-4 chr11 62107964 62108671 + 1.33333 NA Intergenic Intergenic -15694 NM_020238 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 326.833-14 chrX 86078770 86079191 + 1.33333 NA Intergenic L1MC5a|LINE|L1 -31422 NM_001145414 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM Rab escort protein protein-coding 240.667-6 chr10 65621534 65621836 + 1.33333 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 50260 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 247.167-21 chr8 118926716 118927208 + 1.33333 NA intron (NM_002546, intron 3 of 4) intron (NM_002546, intron 3 of 4) 24923 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 263.333-9 chr16 78854324 78854722 + 1.33333 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 746214 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 282.666-9 chr8 60039880 60040255 + 1.33333 NA Intergenic Intergenic 241333 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 269.166-3 chr12 101824113 101824357 + 1.33333 NA intron (NM_024312, intron 1 of 20) MLT1K|LTR|ERVL-MaLR 6724 NM_024312 79158 Hs.46850 NM_024312 ENSG00000111670 GNPTAB GNPTA|ICD N-acetylglucosamine-1-phosphate transferase subunits alpha and beta protein-coding 302.333-12 chr6 72262921 72263318 + 1.33333 NA intron (NM_001350432, intron 14 of 19) MER103C|DNA|hAT-Charlie 46178 NM_001350473 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 432.833 chr2 103401230 103401709 + 1.33333 NA Intergenic Intergenic -417040 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 175.5-52 chr7 49364696 49365244 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -408668 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 179.333-9 chr12 17756142 17756353 + 1.33333 NA Intergenic L1MA4|LINE|L1 82948 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 320.667 chr1 145910037 145910448 + 1.33333 NA promoter-TSS (NM_001303041) promoter-TSS (NM_001303041) -53 NM_001303041 8515 Hs.158237 NM_003637 ENSG00000143127 ITGA10 PRO827 integrin subunit alpha 10 protein-coding 386.333-12 chrX 99381777 99382211 + 1.33333 NA Intergenic Intergenic 1028279 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 261-17 chr3 83535897 83536288 + 1.33333 NA Intergenic L1P4|LINE|L1 1333483 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 258.333 chr1 211353135 211353387 + 1.33333 NA exon (NM_004619, exon 2 of 11) exon (NM_004619, exon 2 of 11) 6897 NM_145759 7188 Hs.523930 NM_004619 ENSG00000082512 TRAF5 MGC:39780|RNF84 TNF receptor associated factor 5 protein-coding 169.833-22 chr2 201957173 201957484 + 1.33333 NA Intergenic Intergenic -77259 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 467.999 chr2 20664850 20665635 + 1.33333 NA Intergenic MIR1_Amn|SINE|MIR -1902 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 176.666-7 chr3 178968338 178968597 + 1.33333 NA Intergenic Intergenic 103342 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 186.333-42 chr9 26628515 26628661 + 1.33333 NA Intergenic L2c|LINE|L2 264214 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 281.333-25 chr6 44033489 44033868 + 1.33333 NA intron (NR_125864, intron 1 of 4) AluSx1|SINE|Alu -30028 NR_125865 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 212.833-20 chr5 157192915 157193136 + 1.33333 NA intron (NM_005546, intron 1 of 16) AluJr|SINE|Alu 12129 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 268.667-6 chr12 22840096 22840438 + 1.33333 NA Intergenic MER2|DNA|TcMar-Tigger 215096 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 218.333-23 chr3 194618332 194618584 + 1.33333 NA intron (NM_001166305, intron 5 of 10) (TA)n|Simple_repeat|Simple_repeat 14961 NM_138399 93109 Hs.478729 NM_138399 ENSG00000145014 TMEM44 - transmembrane protein 44 protein-coding 196.333-37 chr5 60952992 60953190 + 1.33333 NA intron (NM_174889, intron 1 of 3) L1MEc|LINE|L1 7886 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 173.333-19 chr20 2488417 2488645 + 1.33333 NA intron (NM_001321802, intron 5 of 6) intron (NM_001321802, intron 5 of 6) -17742 NM_003091 6628 Hs.83753 NM_003091 ENSG00000125835 SNRPB CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B small nuclear ribonucleoprotein polypeptides B and B1 protein-coding 241.333-26 chr5 56900233 56900588 + 1.33333 NA Intergenic Intergenic -8850 NR_136556 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 167.5-18 chr17 57412917 57413235 + 1.33333 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 110521 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 278.667-4 chr10 81268046 81268416 + 1.33333 NA Intergenic Intergenic -606963 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 253.5-6 chr10_GL383545v1_alt 59346 59764 + 1.33333 NA intron (NR_138082, intron 1 of 1) intron (NR_138082, intron 1 of 1) 56537 NR_138082 101060171 Hs.568842 NR_138082 ARMC4P1 - armadillo repeat containing 4 pseudogene 1 pseudo 238.666-4 chr11 16161570 16161936 + 1.33333 NA intron (NM_033326, intron 6 of 15) intron (NM_033326, intron 6 of 15) -192132 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 299.333-8 chr13 97205727 97206210 + 1.33333 NA Intergenic Intergenic -16321 NM_001306070 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 336-7 chr13 104325384 104325772 + 1.33333 NA Intergenic Intergenic 900378 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 190.667-30 chr20 9433747 9434018 + 1.33333 NA intron (NM_000933, intron 24 of 35) L1ME4b|LINE|L1 -80476 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 300.666-3 chr5 177369142 177369680 + 1.33333 NA intron (NM_006480, intron 9 of 14) intron (NM_006480, intron 9 of 14) 11487 NM_001366617 10636 Hs.9347 NM_006480 ENSG00000169220 RGS14 - regulator of G protein signaling 14 protein-coding 166.667-25 chr19 46134596 46134825 + 1.33333 NA Intergenic MER1A|DNA|hAT-Charlie -10022 NM_207393 388555 Hs.365496 NM_207393 ENSG00000188624 IGFL3 UNQ483 IGF like family member 3 protein-coding 337.501 chr12 83880404 83880685 + 1.33333 NA Intergenic L1MB7|LINE|L1 1032255 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 358-8 chr3 7632783 7633266 + 1.33333 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -97740 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 204-2 chr1 159551845 159552092 + 1.33333 NA Intergenic L1MC4|LINE|L1 -15961 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 245-22 chr3 14661841 14662221 + 1.33333 NA intron (NM_016474, intron 5 of 10) L2b|LINE|L2 10269 NM_016474 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 240-46 chr5 30726848 30727096 + 1.33333 NA Intergenic L1P4|LINE|L1 -466714 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 314-19 chr5 169301295 169301607 + 1.33333 NA promoter-TSS (NM_001271946) promoter-TSS (NM_001271946) -312 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 174.667-31 chr22 29821457 29821656 + 1.33333 NA intron (NM_001369944, intron 2 of 16) MIRb|SINE|MIR 16718 NM_001369926 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 254.5-3 chr11 3963819 3964075 + 1.33333 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 107885 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 290.334-4 chr13 45341390 45341678 + 1.33333 NA promoter-TSS (NM_001286272) promoter-TSS (NM_001286272) 189 NR_024458 100190939 Hs.375766 NR_024458 TPT1-AS1 - TPT1 antisense RNA 1 ncRNA 183.833-15 chr20 33457200 33457556 + 1.33333 NA Intergenic Intergenic -13486 NM_003098 6640 Hs.31121 NM_003098 ENSG00000101400 SNTA1 LQT12|SNT1|TACIP1|dJ1187J4.5 syntrophin alpha 1 protein-coding 179-4 chr1 247078701 247078848 + 1.33333 NA promoter-TSS (NM_001204220) promoter-TSS (NM_001204220) 37 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 331.666 chr2 234598024 234598635 + 1.33333 NA Intergenic L1M4|LINE|L1 -84339 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 320.667-9 chr14 27636861 27637290 + 1.33333 NA non-coding (NR_039992, exon 5 of 5) non-coding (NR_039992, exon 5 of 5) -3797 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 277.333-17 chr14 72468635 72468968 + 1.33333 NA intron (NM_001370288, intron 7 of 16) intron (NM_001370288, intron 7 of 16) -48019 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 306.333-6 chr3 88379552 88379887 + 1.33333 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 41263 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 165.666-2 chr10 115196824 115197065 + 1.33333 NA intron (NM_207303, intron 8 of 28) L1MEf|LINE|L1 103579 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 308.166-4 chr12 63781489 63781861 + 1.33333 NA intron (NM_014254, intron 2 of 5) MER103C|DNA|hAT-Charlie 1549 NM_001278237 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 353-5 chr17 32269428 32270225 + 1.33333 NA intron (NM_001363836, intron 2 of 8) intron (NM_001363836, intron 2 of 8) 3650 NM_001363834 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 431.168 chr2 107672270 107672683 + 1.33333 NA Intergenic L1MC2|LINE|L1 -81636 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 191.666-11 chr7 22445721 22445980 + 1.33333 NA intron (NM_001164460, intron 4 of 4) intron (NM_001164460, intron 4 of 4) 54432 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 200.166 chr14 62716956 62717222 + 1.33333 NA intron (NM_172375, intron 9 of 9) L1MB7|LINE|L1 328369 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 416.5-5 chr2 2291911 2292810 + 1.33333 NA intron (NM_015025, intron 1 of 24) intron (NM_015025, intron 1 of 24) -26872 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 217.5-3 chr10 109377869 109378334 + 1.33333 NA Intergenic Intergenic 545145 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 183-26 chr2 23888467 23888680 + 1.33333 NA intron (NR_125717, intron 2 of 28) intron (NR_125717, intron 2 of 28) 38550 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 244-39 chr8 145050254 145050499 + 1.33333 NA Intergenic LTR43|LTR|ERV1 -2091 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 233.167 chr1 26692243 26692539 + 1.33333 NA non-coding (NR_135804, exon 1 of 1) non-coding (NR_135804, exon 1 of 1) 1740 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 317-8 chr2 115164491 115164929 + 1.33333 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 2555 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 166-67 chr8 121520368 121520683 + 1.33333 NA Intergenic L1MCa|LINE|L1 -118821 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 210.833-21 chr3 191425035 191425257 + 1.33333 NA promoter-TSS (NR_120606) promoter-TSS (NR_120606) -378 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 353.166 chr12 5102030 5102358 + 1.33333 NA Intergenic Intergenic 58315 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 362.5-12 chr5 122558889 122559278 + 1.33333 NA Intergenic Intergenic 25517 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 208.833-17 chr2 117648222 117648529 + 1.33333 NA Intergenic Intergenic -166316 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 168-31 chr20 21964662 21964830 + 1.33333 NA Intergenic L1MEd|LINE|L1 -89344 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 208.666-2 chr1 111192371 111192632 + 1.33333 NA intron (NM_001271833, intron 7 of 11) intron (NM_001271833, intron 7 of 11) 8145 NM_024901 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 240.666-3 chr12 109518531 109518864 + 1.33333 NA intron (NM_130466, intron 19 of 27) intron (NM_130466, intron 19 of 27) 41063 NM_183415 89910 Hs.374067 NM_130466 ENSG00000151148 UBE3B BPIDS|KOS ubiquitin protein ligase E3B protein-coding 274.5-9 chr17 55558796 55559089 + 1.33333 NA Intergenic L1P1|LINE|L1 -137107 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 254.667-17 chr2 107208370 107208714 + 1.33333 NA intron (NR_049853, intron 2 of 3) LTR49-int|LTR|ERV1 140983 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 197.333-35 chr6 161781864 161782037 + 1.33333 NA intron (NM_004562, intron 7 of 11) L1MC5|LINE|L1 310973 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 168.333-6 chr1 191286409 191286608 + 1.33333 NA Intergenic L1MEc|LINE|L1 -58010 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 176.166-3 chr2 23319160 23319388 + 1.33333 NA Intergenic Intergenic -65905 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 338.333-4 chr16 58494851 58495190 + 1.33333 NA intron (NM_020465, intron 3 of 15) intron (NM_020465, intron 3 of 15) -5123 NR_040072 65009 Hs.322430 NM_020465 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 169.333-41 chr3 97963567 97963750 + 1.33333 NA intron (NM_001042533, intron 2 of 9) intron (NM_001042533, intron 2 of 9) 8773 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 223.333-27 chr2 221372485 221372738 + 1.33333 NA Intergenic Intergenic 199693 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 228.666-4 chr18 77157681 77157888 + 1.33333 NA Intergenic L1M5|LINE|L1 -25001 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 379.833-5 chrX 151082502 151082933 + 1.33333 NA Intergenic CpG -85505 NR_036256 100422930 NR_036256 ENSG00000265789 MIR4330 - microRNA 4330 ncRNA 259.667-24 chrX 102148211 102148609 + 1.33333 NA Intergenic L1M4|LINE|L1 -5929 NM_001006938 158931 Hs.447815 NM_001006938 ENSG00000204071 TCEAL6 Tceal3|WEX2 transcription elongation factor A like 6 protein-coding 345.166 chr10 58064972 58065415 + 1.33333 NA Intergenic Intergenic 202701 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 274.333-22 chr8 61139165 61139454 + 1.33333 NA Intergenic CpG -148661 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 228.666-9 chr5 130604828 130605080 + 1.33333 NA Intergenic Intergenic 560302 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 183-8 chr10 117920441 117920690 + 1.33333 NA Intergenic L2a|LINE|L2 -126256 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 180.666 chr10 61669463 61669664 + 1.33333 NA intron (NM_173554, intron 1 of 6) intron (NM_173554, intron 1 of 6) 6602 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 176-30 chr4 97303503 97303935 + 1.33333 NA Intergenic L1MA4|LINE|L1 -63207 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 229.5-15 chr19 17784350 17784764 + 1.33333 NA intron (NM_001161357, intron 25 of 28) intron (NM_001161357, intron 25 of 28) -10581 NM_014256 10331 Hs.69009 NM_014256 ENSG00000179913 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 215.333-9 chr10 60417479 60417717 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -27723 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 344.833-6 chr3 9801501 9801942 + 1.33333 NA exon (NM_001024959, exon 4 of 6) exon (NM_001024959, exon 4 of 6) -8194 NM_001025930 26140 Hs.726435 NM_015644 ENSG00000214021 TTLL3 HOTTL tubulin tyrosine ligase like 3 protein-coding 205.834-8 chr8 82420668 82420934 + 1.33333 NA Intergenic Intergenic -491303 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 170-16 chr14 58046655 58046801 + 1.33333 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 105485 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 230.5-31 chr5 157976538 157976783 + 1.33333 NA Intergenic Intergenic -117515 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 279.666-3 chr14 75969313 75969697 + 1.33333 NA intron (NM_001329938, intron 3 of 4) MIRb|SINE|MIR 12490 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 292.333-2 chr10 29239831 29240208 + 1.33333 NA Intergenic Intergenic -49051 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 190-28 chr2 42581591 42581920 + 1.33333 NA intron (NM_001330443, intron 3 of 16) intron (NM_001330443, intron 3 of 16) 13123 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 347.167-6 chr2 121425069 121425599 + 1.33333 NA intron (NM_001207051, intron 21 of 37) intron (NM_001207051, intron 21 of 37) -105546 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 308.666-3 chr17 8300565 8300858 + 1.33333 NA Intergenic Intergenic -5311 NM_001320871 399512 Hs.118918 NM_201520 ENSG00000125434 SLC25A35 - solute carrier family 25 member 35 protein-coding 239.833-16 chr7 50307309 50307531 + 1.33333 NA intron (NM_001291846, intron 1 of 4) intron (NM_001291846, intron 1 of 4) -1280 NM_001291838 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 196.667-38 chr5 148290583 148290828 + 1.33333 NA non-coding (NR_105057, exon 4 of 5) non-coding (NR_105057, exon 4 of 5) -21718 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 346.166 chr14 49892900 49893336 + 1.33333 NA promoter-TSS (NM_001663) promoter-TSS (NM_001663) 36 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 313.666-6 chr6 137643765 137644081 + 1.33333 NA Intergenic L1PA11|LINE|L1 -21723 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 241.833-11 chr5 149403882 149404358 + 1.33333 NA promoter-TSS (NM_001317987) promoter-TSS (NM_001317987) 82 NM_001317987 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 241.666-7 chr6 119425782 119425970 + 1.33333 NA Intergenic L1ME3D|LINE|L1 65426 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 290.333-13 chr2 226247474 226248038 + 1.33333 NA Intergenic Intergenic 104962 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 304-9 chr14 96567184 96567550 + 1.33333 NA TTS (NM_001293632) TTS (NM_001293632) 64502 NM_001293628 10914 Hs.253726 NM_032632 ENSG00000090060 PAPOLA PAP|PAP-alpha poly(A) polymerase alpha protein-coding 236.833-6 chr12 109509017 109509315 + 1.33333 NA intron (NM_130466, intron 15 of 27) L1MC5|LINE|L1 31532 NM_183415 89910 Hs.374067 NM_130466 ENSG00000151148 UBE3B BPIDS|KOS ubiquitin protein ligase E3B protein-coding 650.832 chr6 35451618 35452922 + 1.33333 NA promoter-TSS (NM_021922) promoter-TSS (NM_021922) -91 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE FA complementation group E protein-coding 255.166 chr18 75727391 75727685 + 1.33333 NA Intergenic Intergenic -15135 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 347.333-9 chr2 221292226 221292496 + 1.33333 NA Intergenic Intergenic 279943 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 300.834-3 chr11 8429834 8430394 + 1.33333 NA intron (NM_001352388, intron 13 of 14) intron (NM_001352388, intron 13 of 14) -161327 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 234.833-7 chr12 24998029 24998435 + 1.33333 NA promoter-TSS (NM_001101339) promoter-TSS (NM_001101339) 657 NM_001321724 645177 Hs.569157 NM_001321724 LOC645177 - uncharacterized LOC645177 protein-coding 289.499 chr8 141069878 141070111 + 1.33333 NA Intergenic Intergenic -58595 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 292.833-5 chr15 58828726 58829045 + 1.33333 NA intron (NM_001040450, intron 5 of 8) intron (NM_001040450, intron 5 of 8) 57583 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 271.667-21 chr6 77740319 77740610 + 1.33333 NA intron (NM_001282136, intron 2 of 4) intron (NM_001282136, intron 2 of 4) 87425 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 257.333-24 chr6 99236508 99236980 + 1.33333 NA Intergenic Intergenic 112135 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 310.167-7 chr21 16942602 16943171 + 1.33333 NA Intergenic L1MA4|LINE|L1 352649 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 685.333 chr18 3261524 3262753 + 1.33333 NA promoter-TSS (NM_001144945) promoter-TSS (NM_001144945) 25 NM_033546 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 167.833-36 chr4 156755889 156756077 + 1.33333 NA Intergenic L1MB7|LINE|L1 215816 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 183.333-52 chr5 79448411 79448574 + 1.33333 NA intron (NM_001277078, intron 3 of 5) intron (NM_001277078, intron 3 of 5) 65344 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 285.5-5 chr11 111903752 111904114 + 1.33333 NA Intergenic L1MB7|LINE|L1 6806 NM_001368246 1410 Hs.53454 NM_001885 ENSG00000109846 CRYAB CMD1II|CRYA2|CTPP2|CTRCT16|HEL-S-101|HSPB5|MFM2 crystallin alpha B protein-coding 311.333-15 chr20 52126241 52126611 + 1.33333 NA intron (NM_199427, intron 5 of 8) intron (NM_199427, intron 5 of 8) -20942 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 353.834-2 chr12 54723433 54723795 + 1.33333 NA Intergenic MER41B|LTR|ERV1 -75249 NM_001300854 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 221.5-28 chr7 143901570 143901790 + 1.33333 NA intron (NM_001206938, intron 1 of 8) intron (NM_001206938, intron 1 of 8) 496 NM_014719 9747 Hs.735149 NM_014719 ENSG00000198420 TCAF1 FAM115A TRPM8 channel associated factor 1 protein-coding 240.5-26 chr7 100545819 100546025 + 1.33333 NA intron (NM_006076, intron 1 of 11) intron (NM_006076, intron 1 of 11) 6719 NM_006076 3268 Hs.521083 NM_006076 ENSG00000106351 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 248-10 chr11 9954574 9954798 + 1.33333 NA intron (NM_030962, intron 16 of 39) (A)n|Simple_repeat|Simple_repeat 115544 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 283.333-17 chr5 136722150 136722534 + 1.33333 NA Intergenic MLT1A|LTR|ERVL-MaLR -356866 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 299.166-4 chr8 107296068 107296402 + 1.33333 NA intron (NM_001199859, intron 5 of 8) intron (NM_001199859, intron 5 of 8) 40280 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 313.833-10 chrX 12901300 12901738 + 1.33333 NA Intergenic AluJo|SINE|Alu -5101 NM_016610 51311 Hs.660543 NM_016610 ENSG00000101916 TLR8 CD288 toll like receptor 8 protein-coding 199.333-37 chr5 11491745 11492016 + 1.33333 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 97037 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 444.999 chr18 3927183 3927646 + 1.33333 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -34939 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 222-8 chr10 65115457 65115704 + 1.33333 NA Intergenic L1MC3|LINE|L1 -191062 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 366.833-3 chr2 22310652 22311174 + 1.33333 NA Intergenic L1MA5A|LINE|L1 -225566 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 218.666-8 chr2 109551179 109551357 + 1.33333 NA intron (NM_001321508, intron 5 of 5) intron (NM_001321508, intron 5 of 5) 62399 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 280.333-13 chr16 64456526 64456761 + 1.33333 NA Intergenic L2|LINE|L2 665420 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 237-11 chr14 49059537 49059764 + 1.33333 NA Intergenic Intergenic 526730 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 218-26 chr3 101546133 101546346 + 1.33333 NA Intergenic MER41B|LTR|ERV1 -15629 NM_017819 54931 Hs.594839 NM_017819 ENSG00000174173 TRMT10C COXPD30|HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding 396.333-2 chr11 73289227 73289893 + 1.33333 NA intron (NM_001277207, intron 2 of 2) intron (NM_001277207, intron 2 of 2) 17418 NM_001277208 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 270.667-3 chr14 31937438 31937810 + 1.33333 NA Intergenic Intergenic -7229 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 241-25 chr5 72562297 72562507 + 1.33333 NA intron (NR_105008, intron 1 of 3) intron (NR_105008, intron 1 of 3) 5325 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 280-5 chr12 27890371 27890703 + 1.33333 NA Intergenic L1ME4a|LINE|L1 79439 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 291.5-15 chr17 14196495 14196957 + 1.33333 NA intron (NM_001303, intron 6 of 6) (CCT)n|Simple_repeat|Simple_repeat 40136 NM_001007530 146822 Hs.447556 NM_001007530 ENSG00000223510 CDRT15 - CMT1A duplicated region transcript 15 protein-coding 224-48 chr8 126477098 126477322 + 1.33333 NA Intergenic Intergenic 81268 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 356-21 chr8 98069235 98069571 + 1.33333 NA intron (NM_001170806, intron 1 of 1) L1ME4b|LINE|L1 4835 NM_173549 203111 Hs.171455 NM_173549 ENSG00000177459 ERICH5 C8orf47 glutamate rich 5 protein-coding 233.333-13 chr17 76758418 76758698 + 1.33333 NA intron (NR_148240, intron 9 of 13) AluJb|SINE|Alu 21057 NR_148232 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 243.333-9 chr11 90586550 90586766 + 1.33333 NA intron (NR_104190, intron 2 of 6) intron (NR_104190, intron 2 of 6) -30801 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 190.666-6 chr5 102837282 102837683 + 1.33333 NA intron (NM_001364582, intron 1 of 24) intron (NM_001364582, intron 1 of 24) -28341 NM_000919 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 306.333-7 chr5 26829428 26829790 + 1.33333 NA Intergenic L1MA6|LINE|L1 208977 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 190.667-23 chr2 18610752 18610978 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -21285 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 399.333-5 chr11 99908916 99909496 + 1.33333 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 353061 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 288.5-28 chr6 118739299 118739696 + 1.33333 NA Intergenic Intergenic -29422 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 189.833-23 chr9 96341789 96342042 + 1.33333 NA intron (NR_104627, intron 8 of 12) intron (NR_104627, intron 8 of 12) -39739 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 369.333-7 chr7_KI270803v1_alt 327291 327839 + 1.33333 NA Intergenic Intergenic -93417 NR_036483 207147 Hs.604069 NR_036483 ENSG00000186163 TRY2P - trypsinogen-like pseudogene pseudo 301.333-17 chr5 18315100 18315376 + 1.33333 NA Intergenic L1PA15|LINE|L1 507964 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 215.166 chr20 39885966 39886276 + 1.33333 NA Intergenic Intergenic -118340 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 192.5-11 chr12 12007008 12007301 + 1.33333 NA Intergenic Intergenic -42707 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 290.333-2 chr1 79758419 79758922 + 1.33333 NA Intergenic Intergenic -751940 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 215.833-23 chr7 48876255 48876684 + 1.33333 NA Intergenic Intergenic -48078 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 232.666-10 chr8 82710155 82710487 + 1.33333 NA Intergenic Intergenic -201783 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 478.667-3 chr4 6546781 6547325 + 1.33333 NA intron (NM_001206994, intron 1 of 9) intron (NM_001206994, intron 1 of 9) 8562 NM_001206995 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 299.666-2 chr17 55163028 55163358 + 1.33333 NA 3' UTR (NM_178509, exon 18 of 18) 3' UTR (NM_178509, exon 18 of 18) -101767 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 314.499-2 chr5 154972287 154972655 + 1.33333 NA Intergenic MER90|LTR|ERV1 31398 NM_014180 29093 Hs.483924 NM_014180 ENSG00000082515 MRPL22 HSPC158|L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 198-17 chr18 9477514 9477775 + 1.33333 NA intron (NM_006788, intron 1 of 9) intron (NM_006788, intron 1 of 9) 2131 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 592.666-2 chr20 33862396 33863252 + 1.33333 NA Intergenic CpG 51476 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 214.166-2 chr14 68292189 68292453 + 1.33333 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 336466 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 462.499-2 chr19 29857857 29858408 + 1.33333 NA Intergenic Intergenic 46141 NM_001238 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 225.001 chr21 15604553 15604857 + 1.33333 NA Intergenic Intergenic -125229 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 427.833-6 chr3 43925320 43925882 + 1.33333 NA Intergenic MLT1L|LTR|ERVL-MaLR -188611 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 286.666-10 chr6 54608709 54608934 + 1.33333 NA Intergenic LTR16E1|LTR|ERVL -237950 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 167-14 chr18 72774739 72774931 + 1.33333 NA intron (NR_148694, intron 7 of 11) intron (NR_148694, intron 7 of 11) 78547 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 189.5-6 chr12 37852171 37852459 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr -464459 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 242.666-14 chr20 58103116 58103318 + 1.33333 NA Intergenic MLT1I|LTR|ERVL-MaLR -47685 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 357.999-2 chr19 1248245 1248525 + 1.33333 NA promoter-TSS (NM_177401) promoter-TSS (NM_177401) -168 NM_177401 90007 Hs.465529 NM_177401 ENSG00000167470 MIDN - midnolin protein-coding 197.833-19 chr19 53961756 53962054 + 1.33333 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat -1032 NM_031895 59283 Hs.631595 NM_031895 ENSG00000142408 CACNG8 - calcium voltage-gated channel auxiliary subunit gamma 8 protein-coding 242.333-20 chr5 4719715 4720108 + 1.33333 NA Intergenic L1M5|LINE|L1 -53570 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 213-40 chr7 55548547 55548723 + 1.33333 NA intron (NM_030796, intron 1 of 4) intron (NM_030796, intron 1 of 4) 4131 NM_001284282 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 265.999 chr11 38054407 38054651 + 1.33333 NA Intergenic Intergenic 115928 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 308.166 chr1 45883303 45883685 + 1.33333 NA intron (NM_001324320, intron 4 of 29) MIRc|SINE|MIR 19146 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 180.333-6 chr1 239827774 239828041 + 1.33333 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 71965 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 252-32 chr9 11850528 11850752 + 1.33333 NA Intergenic MIRb|SINE|MIR -842745 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 349.333-8 chr4 107898440 107898999 + 1.33333 NA intron (NM_152621, intron 2 of 5) intron (NM_152621, intron 2 of 5) 5455 NM_001136257 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 382.333-2 chr4 24473155 24473559 + 1.33333 NA promoter-TSS (NR_148981) promoter-TSS (NR_148981) -452 NM_001330751 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 385-7 chr20 2752735 2753310 + 1.33333 NA intron (NR_138537, intron 15 of 17) intron (NR_138537, intron 15 of 17) 47605 NM_001184699 56265 Hs.659346 NM_019609 ENSG00000088882 CPXM1 CPX1|CPXM carboxypeptidase X, M14 family member 1 protein-coding 248-39 chr8 86771141 86771376 + 1.33333 NA Intergenic Intergenic -27583 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 383.333-6 chr10 67756795 67757251 + 1.33333 NA Intergenic Intergenic -60828 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 313-2 chr1 71059122 71059497 + 1.33333 NA intron (NR_038420, intron 2 of 2) intron (NR_038420, intron 2 of 2) 8407 NR_029707 406962 NR_029707 ENSG00000207721 MIR186 MIRN186|miR-186 microRNA 186 ncRNA 204-20 chr2 142142324 142142527 + 1.33333 NA Intergenic Intergenic -10724 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 211.833-3 chr10 80734758 80735032 + 1.33333 NA Intergenic L1MC5|LINE|L1 85098 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 173.833-30 chr6 153472467 153472626 + 1.33333 NA Intergenic Intergenic -341264 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 459.833-5 chr5 42879499 42880121 + 1.33333 NA Intergenic Charlie19a|DNA|hAT-Charlie -67734 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 323.333-13 chr2 63329484 63329794 + 1.33333 NA intron (NR_148704, intron 13 of 18) intron (NR_148704, intron 13 of 18) 108368 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 322-3 chr12 85101098 85101439 + 1.33333 NA intron (NM_001079910, intron 13 of 26) intron (NM_001079910, intron 13 of 26) 64917 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 228.166-2 chr18 2740599 2740870 + 1.33333 NA exon (NM_015295, exon 28 of 48) exon (NM_015295, exon 28 of 48) 84847 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 194.667-57 chr8 125291665 125291901 + 1.33333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -138575 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 270.666-11 chr3 135706680 135707145 + 1.33333 NA Intergenic Intergenic -258816 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 272.333-15 chr8 29320560 29320957 + 1.33333 NA Intergenic SATR2|Satellite|Satellite 28047 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 382 chr1 184494185 184494598 + 1.33333 NA intron (NM_030806, intron 2 of 5) L2a|LINE|L2 107362 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 290-14 chr4 113944466 113944741 + 1.33333 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 35044 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 467.833-3 chr16 65683792 65684310 + 1.33333 NA Intergenic Intergenic -107751 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 294.999-3 chr14 67121859 67122320 + 1.33333 NA intron (NM_001024218, intron 15 of 21) intron (NM_001024218, intron 15 of 21) -67351 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 286-15 chr3 164177634 164177894 + 1.33333 NA Intergenic Intergenic -6208 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 294 chr1 13859998 13860474 + 1.33333 NA Intergenic HAL1|LINE|L1 110821 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 364.666 chr1 68512986 68513351 + 1.33333 NA intron (NR_110671, intron 1 of 2) MER4-int|LTR|ERV1 -16086 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 199.333-12 chr12 10705857 10706140 + 1.33333 NA intron (NM_001145426, intron 5 of 8) L1MC4|LINE|L1 17325 NM_003651 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 395.5-3 chr3 115028702 115029130 + 1.33333 NA intron (NM_015642, intron 1 of 9) L1M5|LINE|L1 42498 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 204-31 chr3 191625338 191625594 + 1.33333 NA Intergenic L1MEd|LINE|L1 164303 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 239.666-4 chr3 24710419 24710672 + 1.33333 NA Intergenic Intergenic -118778 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 285.333 chr1 159177016 159177495 + 1.33333 NA intron (NM_001127173, intron 1 of 8) intron (NM_001127173, intron 1 of 8) 5640 NM_001127173 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 360.167-9 chr5 18852926 18853492 + 1.33333 NA Intergenic Intergenic 1033063 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 300.833-5 chr15 39921054 39921359 + 1.33333 NA promoter-TSS (NM_007223) promoter-TSS (NM_007223) -314 NM_001271854 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 203.166 chr1 114939720 114939980 + 1.33333 NA intron (NM_001282542, intron 23 of 30) L1M5|LINE|L1 84987 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 218.666-12 chr4 63674644 63675071 + 1.33333 NA Intergenic LTR40A1|LTR|ERVL 734593 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 198.333-38 chr5 176151564 176151751 + 1.33333 NA intron (NR_036494, intron 19 of 25) L1M5|LINE|L1 32108 NR_038402 100507387 Hs.368516 NR_038402 ENSG00000251623 LOC100507387 - uncharacterized LOC100507387 ncRNA 234.666-2 chr12 6557784 6558082 + 1.33333 NA intron (NM_001033714, intron 15 of 15) AluSz|SINE|Alu -1850 NM_001193457 25900 Hs.15243 NM_015438 ENSG00000010295 IFFO1 HOM-TES-103|IFFO intermediate filament family orphan 1 protein-coding 223.333-40 chr6 81541038 81541544 + 1.33333 NA Intergenic Intergenic 211390 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 259.167-16 chr7 29621327 29621695 + 1.33333 NA Intergenic Intergenic 55978 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 201.666 chr7 77281368 77281768 + 1.33333 NA intron (NM_020879, intron 14 of 18) intron (NM_020879, intron 14 of 18) -81749 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 248.5-26 chr4 75493134 75493409 + 1.33333 NA intron (NM_015436, intron 4 of 8) intron (NM_015436, intron 4 of 8) 16025 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 215.667-33 chr3 194458103 194458384 + 1.33333 NA intron (NM_001367549, intron 6 of 33) intron (NM_001367549, intron 6 of 33) 9996 NM_024524 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 228.667-51 chr8 81811848 81812178 + 1.33333 NA intron (NR_145472, intron 4 of 6) L1MB7|LINE|L1 30172 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 298.166-3 chr15 26315210 26315586 + 1.33333 NA Intergenic MER44A|DNA|TcMar-Tigger 199585 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 165-13 chr12 29318006 29318295 + 1.33333 NA promoter-TSS (NR_103860) promoter-TSS (NR_103860) -302 NR_103860 100506606 Hs.298851 NR_103860 ENSG00000257176 LOC100506606 - uncharacterized LOC100506606 ncRNA 318.333-11 chr7 157660519 157660822 + 1.33333 NA intron (NM_130843, intron 12 of 21) intron (NM_130843, intron 12 of 21) -86248 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 215.333-39 chr6 67986905 67987208 + 1.33333 NA Intergenic MER67D|LTR|ERV1 -68295 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 227.333-36 chr7 131859219 131859688 + 1.33333 NA Intergenic Intergenic -50767 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 208.667-45 chr7 128459269 128459544 + 1.33333 NA TTS (NM_013332) TTS (NM_013332) 3528 NM_013332 29923 Hs.706124 NM_013332 ENSG00000135245 HILPDA C7orf68|HIG-2|HIG2 hypoxia inducible lipid droplet associated protein-coding 201-9 chr15 61007196 61007594 + 1.33333 NA intron (NM_134261, intron 1 of 10) Charlie2b|DNA|hAT-Charlie 221907 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 309-5 chr1 187883992 187884261 + 1.33333 NA Intergenic Intergenic 440498 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 394.5-6 chr3 2170993 2171480 + 1.33333 NA intron (NM_175607, intron 2 of 24) L1ME3G|LINE|L1 -26995 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 433.333-2 chr17 60336790 60337260 + 1.33333 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) 55108 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 184.5-44 chr5 148337270 148337508 + 1.33333 NA intron (NM_001040433, intron 2 of 3) intron (NM_001040433, intron 2 of 3) 1830 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 253.666-5 chr8 123418513 123418742 + 1.33333 NA intron (NM_018024, intron 1 of 5) L2a|LINE|L2 1853 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 345.666-4 chr8 123691009 123691383 + 1.33333 NA intron (NM_001003954, intron 9 of 11) intron (NM_001003954, intron 9 of 11) -37395 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 274.999-2 chr3 47838103 47838321 + 1.33333 NA intron (NM_001330990, intron 7 of 22) intron (NM_001330990, intron 7 of 22) -11343 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 224.333-36 chr8 4642046 4642256 + 1.33333 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 352763 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 243.666-2 chr6 73252487 73252669 + 1.33333 NA intron (NM_001251874, intron 2 of 4) AluSz6|SINE|Alu 10618 NM_030568 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 278.499-2 chr9 93397439 93397725 + 1.33333 NA Intergenic MER5A|DNA|hAT-Charlie -51168 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 306.666-7 chr8 114229969 114230206 + 1.33333 NA Intergenic THE1B|LTR|ERVL-MaLR -793148 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 187.666 chr11 76152410 76152798 + 1.33333 NA Intergenic Intergenic 53898 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 358.999-2 chr3 97723275 97723640 + 1.33333 NA intron (NM_001080448, intron 15 of 17) intron (NM_001080448, intron 15 of 17) -41064 NM_177976 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 410.332 chr5 147391784 147392318 + 1.33333 NA 3' UTR (NM_001387, exon 14 of 14) 3' UTR (NM_001387, exon 14 of 14) 61641 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 352.167-7 chr2 228658985 228659654 + 1.33333 NA Intergenic (GCAC)n|Simple_repeat|Simple_repeat -47924 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 356.333-6 chr17 40624547 40624913 + 1.33333 NA TTS (NM_003079) TTS (NM_003079) 23088 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 263.666-6 chr8 84166659 84167108 + 1.33333 NA Intergenic Intergenic -15904 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 351.333-11 chr5 15323117 15323428 + 1.33333 NA Intergenic Intergenic -56712 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 249.167-14 chr2 202745931 202746133 + 1.33333 NA intron (NM_173511, intron 4 of 7) L1M2|LINE|L1 83202 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 352.666-11 chr5 113682304 113682641 + 1.33333 NA Intergenic Tigger3|DNA|TcMar-Tigger 168778 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 170.666-6 chr3 151837971 151838244 + 1.33333 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) 23991 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 174.666-5 chr4 78327489 78327629 + 1.33333 NA intron (NM_001166133, intron 18 of 41) intron (NM_001166133, intron 18 of 41) 38574 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 421.834 chr1 95255893 95256378 + 1.33333 NA Intergenic MER5A1|DNA|hAT-Charlie 21925 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 256.999 chr19 39051870 39052208 + 1.33333 NA Intergenic AluSz6|SINE|Alu -19490 NM_178820 126433 Hs.187461 NM_178820 ENSG00000161243 FBXO27 FBG5|Fbx27 F-box protein 27 protein-coding 284.666-10 chr6 137093959 137094226 + 1.33333 NA Intergenic MIRb|SINE|MIR -48912 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 181.333-18 chr2 42836244 42836493 + 1.33333 NA Intergenic MLT1G-int|LTR|ERVL-MaLR -43785 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 185-31 chr2 102861748 102861920 + 1.33333 NA Intergenic L1ME3A|LINE|L1 33888 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 196.833-2 chr11 120684818 120685134 + 1.33333 NA intron (NM_001282470, intron 2 of 19) AluYc|SINE|Alu 120540 NM_001282473 2900 Hs.538738 NM_014619 ENSG00000149403 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate ionotropic receptor kainate type subunit 4 protein-coding 266.333-19 chr9 31495367 31495686 + 1.33333 NA Intergenic Intergenic -114036 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 437.667-4 chr21 29369671 29370066 + 1.33333 NA Intergenic MLT2B1|LTR|ERVL -2633 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 182-49 chr8 138251452 138251671 + 1.33333 NA intron (NM_015912, intron 5 of 19) (AATG)n|Simple_repeat|Simple_repeat -168016 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 215.167-11 chr14 61718721 61719144 + 1.33333 NA intron (NR_144368, intron 1 of 2) Charlie15b|DNA|hAT-Charlie 21310 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 179.833-28 chr6 155519070 155519455 + 1.33333 NA intron (NR_134597, intron 2 of 2) intron (NR_134597, intron 2 of 2) 4418 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 215.833-21 chr7 29593941 29594105 + 1.33333 NA Intergenic Intergenic 28490 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 277.333-13 chr13 32632943 32633339 + 1.33333 NA intron (NM_015032, intron 1 of 34) L1MB4|LINE|L1 46689 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 207.166-2 chr13 112075249 112075554 + 1.33333 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 8252 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 202-9 chr13 37769022 37769276 + 1.33333 NA intron (NM_003306, intron 2 of 10) intron (NM_003306, intron 2 of 10) 101276 NM_001135957 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 261.5-19 chr17_KI270729v1_random 2336 2743 + 1.33333 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 349.5-5 chr17 751847 752494 + 1.33333 NA promoter-TSS (NR_024120) promoter-TSS (NR_024120) 94 NM_015721 50628 Hs.499620 NM_015721 ENSG00000179409 GEMIN4 HC56|HCAP1|HHRF-1|NEDMCR|p97 gem nuclear organelle associated protein 4 protein-coding 189.333-30 chr5 68058312 68058775 + 1.33333 NA Intergenic Intergenic -131333 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 301-18 chr3 188007573 188007917 + 1.33333 NA Intergenic Intergenic -31338 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 182-43 chr6 70426949 70427213 + 1.33333 NA intron (NM_001351602, intron 3 of 21) intron (NM_001351602, intron 3 of 21) -13123 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 356.167 chr1 19653465 19653914 + 1.33333 NA intron (NM_001278166, intron 1 of 3) intron (NM_001278166, intron 1 of 3) 6079 NM_001278166 4681 Hs.654502 NM_005380 ENSG00000158747 NBL1 D1S1733E|DAN|DAND1|NB|NO3 NBL1, DAN family BMP antagonist protein-coding 386.833-4 chr3 56801994 56802343 + 1.33333 NA promoter-TSS (NM_019555) promoter-TSS (NM_019555) -219 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 267.167-8 chr3 113830889 113831315 + 1.33333 NA Intergenic L1MC4|LINE|L1 -7686 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 485.166-2 chr2 31100641 31101201 + 1.33333 NA intron (NM_001329095, intron 1 of 15) MER47A|DNA|TcMar-Tigger 28719 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 302.666-4 chr2 167400873 167401135 + 1.33333 NA Intergenic Intergenic 213632 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 325.833-5 chr3 149393155 149393564 + 1.33333 NA Intergenic L1ME3G|LINE|L1 15581 NR_109809 100874091 Hs.549633 NR_046650 ENSG00000240541 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 228-23 chr18 76776145 76776487 + 1.33333 NA Intergenic Intergenic 45979 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 303.333-9 chr2 219294987 219295412 + 1.33333 NA promoter-TSS (NR_029688) promoter-TSS (NR_029688) -999 NR_029688 406944 NR_029688 ENSG00000207647 MIR153-1 MIRN153-1|mir-153-1 microRNA 153-1 ncRNA 168.333-37 chr2 152118951 152119421 + 1.33333 NA 3' UTR (NM_005843, exon 14 of 14) 3' UTR (NM_005843, exon 14 of 14) -20019 NM_000726 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 172.666-2 chr1 192296304 192296510 + 1.33333 NA Intergenic Intergenic -20585 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 335.833-3 chr12 41831006 41831364 + 1.33333 NA Intergenic L1MB3|LINE|L1 66996 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 194.666-2 chr12 15839178 15839373 + 1.33333 NA Intergenic MER91A|DNA|hAT-Tip100 -43112 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 464.834 chr1 200802674 200803302 + 1.33333 NA intron (NM_001297707, intron 2 of 17) intron (NM_001297707, intron 2 of 17) 63416 NM_203459 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 166.666-5 chr3 96050384 96050565 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR -309490 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 216.667-45 chr7 45302987 45303242 + 1.33333 NA Intergenic L1MB5|LINE|L1 145323 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 460.499-3 chr17 50297539 50298199 + 1.33333 NA Intergenic AluJo|SINE|Alu -10014 NR_125805 103752589 Hs.612913 NR_125805 ENSG00000251179 TMEM92-AS1 TCONS_00025237|lncRNA-508851 TMEM92 antisense RNA 1 ncRNA 168-29 chr2 218271880 218272020 + 1.33333 NA intron (NM_015488, intron 2 of 9) intron (NM_015488, intron 2 of 9) 1431 NM_015488 25953 Hs.98475 NM_015488 ENSG00000127838 PNKD BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|TAHCCP2 PNKD metallo-beta-lactamase domain containing protein-coding 420.833-4 chr4 145061190 145061744 + 1.33333 NA intron (NM_001256710, intron 4 of 5) intron (NM_001256710, intron 4 of 5) 35915 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 256.333 chr1 63638272 63638627 + 1.33333 NA intron (NM_001172818, intron 6 of 10) intron (NM_001172818, intron 6 of 10) 15233 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 208.5-26 chr20 44573828 44574134 + 1.33333 NA intron (NM_007066, intron 1 of 3) intron (NM_007066, intron 1 of 3) -8598 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 238-35 chr8 26322719 26323023 + 1.33333 NA intron (NM_001177591, intron 2 of 9) intron (NM_001177591, intron 2 of 9) 29655 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 221.333-9 chr19 50433904 50434156 + 1.33333 NA intron (NM_004533, intron 1 of 27) AluJr|SINE|Alu 1138 NM_004533 4606 Hs.85937 NM_004533 ENSG00000086967 MYBPC2 MYBPC|MYBPCF myosin binding protein C, fast type protein-coding 308.833-17 chr8 128086281 128086536 + 1.33333 NA intron (NR_003367, intron 6 of 8) MIR|SINE|MIR 37256 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 296.333 chr1 48543011 48543353 + 1.33333 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -70974 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 195-15 chr15 61614762 61615096 + 1.33333 NA Intergenic L1MB1|LINE|L1 -114989 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 277.833-11 chr3 98048134 98048527 + 1.33333 NA Intergenic Intergenic -13026 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 430.166-2 chrX 152821044 152821493 + 1.33333 NA Intergenic Intergenic 9489 NM_004344 1069 Hs.82794 NM_004344 ENSG00000147400 CETN2 CALT|CEN2 centrin 2 protein-coding 197.666-3 chr2 24349819 24350045 + 1.33333 NA intron (NM_001348182, intron 1 of 38) Charlie20a|DNA|hAT-Charlie 10604 NM_001348181 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 232-15 chr15 71249998 71250244 + 1.33333 NA intron (NM_024817, intron 4 of 16) L2c|LINE|L2 -61062 NR_120351 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 271.666-3 chr14 22375488 22375826 + 1.33333 NA Intergenic Intergenic 57096 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 193.833-9 chr15 34892320 34892536 + 1.33333 NA intron (NM_014691, intron 23 of 34) intron (NM_014691, intron 23 of 34) 77314 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 176.666-2 chr10 103565035 103565224 + 1.33333 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -47687 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 278.833-9 chr5 24732080 24732420 + 1.33333 NA Intergenic Intergenic -87272 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 255.833-12 chr18 3652733 3653015 + 1.33333 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 49137 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 242.667-12 chr17 65060615 65060917 + 1.33333 NA Intergenic L1MB5|LINE|L1 -4026 NM_006572 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 231.666-8 chr7 34128689 34128888 + 1.33333 NA intron (NM_133468, intron 14 of 15) L3|LINE|CR1 223249 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 216.666-4 chr15 78572329 78572518 + 1.33333 NA intron (NM_001307945, intron 1 of 5) L1ME3G|LINE|L1 6903 NM_000745 1138 Hs.1614 NM_000745 ENSG00000169684 CHRNA5 LNCR2 cholinergic receptor nicotinic alpha 5 subunit protein-coding 194-33 chr4 89262316 89262491 + 1.33333 NA intron (NM_198281, intron 1 of 1) L1ME4b|LINE|L1 45397 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 193.334-5 chr13 26496593 26496852 + 1.33333 NA Intergenic MER102b|DNA|hAT-Charlie -60961 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 224.5-39 chr7 22561948 22562193 + 1.33333 NA Intergenic MER5A|DNA|hAT-Charlie -1267 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 239.5-37 chr7 95205955 95206270 + 1.33333 NA intron (NM_001166160, intron 7 of 19) intron (NM_001166160, intron 7 of 19) 118420 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 235.333-9 chr2 125525944 125526387 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR 591820 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 344-11 chr2 28948844 28949302 + 1.33333 NA TTS (NM_015131) TTS (NM_015131) 21090 NR_145755 109617012 NR_145755 ENSG00000265706 SNORD53B - small nucleolar RNA, C/D box 53B snoRNA 250.666-3 chr14 60847436 60847729 + 1.33333 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 112821 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 203.333-47 chr4 157646486 157646758 + 1.33333 NA Intergenic MIR|SINE|MIR 74132 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 193.166-2 chr22 39538767 39538924 + 1.33333 NA Intergenic Intergenic -6097 NR_130151 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 231-21 chr20 58937367 58937600 + 1.33333 NA Intergenic L1M4|LINE|L1 -43773 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 228.666-6 chr20 50190808 50191121 + 1.33333 NA 5' UTR (NM_005194, exon 1 of 1) 5' UTR (NM_005194, exon 1 of 1) 134 NM_005194 1051 Hs.517106 NM_005194 ENSG00000172216 CEBPB C/EBP-beta|IL6DBP|NF-IL6|TCF5 CCAAT enhancer binding protein beta protein-coding 437.999-2 chr3 26450384 26450775 + 1.33333 NA Intergenic Intergenic -172227 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 385.333 chr1 214637843 214638324 + 1.33333 NA intron (NM_016343, intron 11 of 19) intron (NM_016343, intron 11 of 19) 34888 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 324.333-6 chr3 86243586 86243864 + 1.33333 NA Intergenic Intergenic -238218 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 253.667-32 chr5 42656204 42656662 + 1.33333 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 90569 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 164.833-19 chr8 3354097 3354434 + 1.33333 NA intron (NM_033225, intron 21 of 69) intron (NM_033225, intron 21 of 69) -625814 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 275.834-10 chr9 123952887 123953196 + 1.33333 NA Intergenic Intergenic -22903 NM_001352965 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 166-18 chr12 55392772 55392915 + 1.33333 NA Intergenic Intergenic -7686 NM_001005518 403282 Hs.554553 NM_001005518 ENSG00000205328 OR6C65 - olfactory receptor family 6 subfamily C member 65 protein-coding 290.5-18 chr3 184335592 184335923 + 1.33333 NA promoter-TSS (NM_001366134) promoter-TSS (NM_001366134) -169 NM_001366134 131408 Hs.591307 NM_144635 ENSG00000175182 FAM131A C3orf40|FLAT715|PRO1378 family with sequence similarity 131 member A protein-coding 368.5-10 chr4 95091513 95091919 + 1.33333 NA intron (NM_001256794, intron 1 of 10) intron (NM_001256794, intron 1 of 10) 225 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 276.167-26 chrX 109385075 109385433 + 1.33333 NA exon (NM_001522, exon 16 of 20) exon (NM_001522, exon 16 of 20) 96832 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 258.666-15 chr9 79085990 79086286 + 1.33333 NA Intergenic L1ME3Cz|LINE|L1 59528 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 335.833-11 chr9 129173750 129174217 + 1.33333 NA Intergenic Intergenic 4278 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5 like protein-coding 197.333-37 chr7 111153677 111154045 + 1.33333 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 62734 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 324.833-2 chr16 1964688 1965127 + 1.33333 NA promoter-TSS (NR_003142) promoter-TSS (NR_003142) -81 NM_002952 6187 Hs.356366 NM_002952 ENSG00000140988 RPS2 LLREP3|S2 ribosomal protein S2 protein-coding 174.5-30 chr6 53321665 53321884 + 1.33333 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) 15843 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 459.166-5 chr8 20231799 20232356 + 1.33333 NA Intergenic Intergenic 34696 NM_001693 526 Hs.295917 NM_001693 ENSG00000147416 ATP6V1B2 ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2 ATPase H+ transporting V1 subunit B2 protein-coding 308.5-24 chr7 65397998 65398323 + 1.33333 NA intron (NM_001287533, intron 4 of 4) intron (NM_001287533, intron 4 of 4) 24305 NM_007139 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 315.833-4 chr11 448006 448375 + 1.33333 NA promoter-TSS (NM_001329548) promoter-TSS (NM_001329548) -78 NM_001329548 81490 Hs.12851 NM_030783 ENSG00000174915 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 296-5 chr15 81408335 81408739 + 1.33333 NA intron (NR_120365, intron 6 of 6) Charlie25|DNA|hAT-Charlie -34324 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 272.333-16 chr8 71518245 71518616 + 1.33333 NA intron (NM_001370334, intron 2 of 19) intron (NM_001370334, intron 2 of 19) 29274 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 269.833-5 chr18 28833065 28833426 + 1.33333 NA Intergenic Intergenic -656115 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 235.333-27 chr8 139426789 139427030 + 1.33333 NA Intergenic Intergenic 276214 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 187.333-21 chr15 66394640 66395077 + 1.33333 NA intron (NM_002755, intron 1 of 10) intron (NM_002755, intron 1 of 10) 7985 NM_002755 5604 Hs.145442 NM_002755 ENSG00000169032 MAP2K1 CFC3|MAPKK1|MEK1|MKK1|PRKMK1 mitogen-activated protein kinase kinase 1 protein-coding 212.667-10 chr14 68233116 68233394 + 1.33333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 395532 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 250.666-2 chr12 127071584 127071858 + 1.33333 NA Intergenic Intergenic -11324 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 278-3 chr1 46357600 46357836 + 1.33333 NA intron (NM_001256127, intron 4 of 5) intron (NM_001256127, intron 4 of 5) 16540 NM_001256127 387338 Hs.163424 NM_199044 ENSG00000117481 NSUN4 SHTAP NOP2/Sun RNA methyltransferase 4 protein-coding 232.666-5 chr12 110552249 110552448 + 1.33333 NA intron (NR_138550, intron 1 of 4) Tigger8|DNA|TcMar-Tigger 30970 NR_138550 160760 Hs.13854 NM_139283 ENSG00000196850 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog protein-coding 288-20 chr3 108539866 108540256 + 1.33333 NA Intergenic Intergenic -10739 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 287.666-4 chrX 54640610 54641184 + 1.33333 NA Intergenic Intergenic 110678 NM_001184819 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 221-18 chr2 123002087 123002293 + 1.33333 NA Intergenic Intergenic 71291 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 275.499-2 chr8 70250917 70251177 + 1.33333 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 152343 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 547.333-2 chr8 73653794 73654602 + 1.33333 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 92642 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 205.333-14 chr15 60421688 60421938 + 1.33333 NA non-coding (NR_147171, exon 17 of 17) non-coding (NR_147171, exon 17 of 17) -23827 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 186.333-31 chr3 111312604 111312766 + 1.33333 NA Intergenic Intergenic -229512 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 210-5 chr11 13248486 13248725 + 1.33333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -28047 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 479.833-3 chr3 99831749 99832274 + 1.33333 NA intron (NM_032359, intron 1 of 9) intron (NM_032359, intron 1 of 9) -8146 NR_110821 101929357 Hs.741615 NR_110821 HP09053 - uncharacterized LOC101929357 ncRNA 284.667 chr1 64244386 64244801 + 1.33333 NA non-coding (NR_158768, exon 10 of 10) non-coding (NR_158768, exon 10 of 10) 40970 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 307-18 chr9 35658370 35658704 + 1.33333 NA promoter-TSS (NR_003051) promoter-TSS (NR_003051) 245 NM_174923 203260 Hs.745107 NM_174923 ENSG00000159884 CCDC107 PSEC0222 coiled-coil domain containing 107 protein-coding 246.667-3 chr10 68955852 68956125 + 1.33333 NA promoter-TSS (NM_004728) promoter-TSS (NM_004728) -182 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 310.999-4 chr9 20349340 20349602 + 1.33333 NA intron (NM_001286691, intron 10 of 10) intron (NM_001286691, intron 10 of 10) 61767 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 388.166-4 chr4 92534157 92534668 + 1.33333 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 230013 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 267.5-26 chr2 112764581 112764870 + 1.33333 NA promoter-TSS (NM_152515) promoter-TSS (NM_152515) -116 NR_130712 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 181.667-4 chr1 109401356 109401565 + 1.33333 NA 3' UTR (NM_001199773, exon 9 of 9) 3' UTR (NM_001199773, exon 9 of 9) -3542 NM_002959 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 192.5-45 chr6 37169621 37169848 + 1.33333 NA promoter-TSS (NM_002648) promoter-TSS (NM_002648) -418 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 207-4 chr1 114455337 114455530 + 1.33333 NA intron (NM_015906, intron 4 of 19) MER4B-int|LTR|ERV1 55770 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 392.333-6 chrX 152437477 152438018 + 1.33333 NA intron (NM_000808, intron 1 of 9) L1MC2|LINE|L1 13568 NM_000808 2556 Hs.123024 NM_000808 ENSG00000011677 GABRA3 - gamma-aminobutyric acid type A receptor alpha3 subunit protein-coding 325.999-2 chr11 47924266 47924623 + 1.33333 NA Intergenic Intergenic -56115 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 927.001 chr4 113277951 113279162 + 1.33333 NA exon (NM_001354277, exon 15 of 41) exon (NM_001354277, exon 15 of 41) -14283 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 343.333-7 chr18 63559490 63559892 + 1.33333 NA exon (NM_080474, exon 3 of 7) exon (NM_080474, exon 3 of 7) 3531 NM_001307928 89777 Hs.348541 NM_080474 ENSG00000166634 SERPINB12 YUKOPIN serpin family B member 12 protein-coding 421.333-9 chr6 152750694 152751174 + 1.33333 NA 5' UTR (NM_003381, exon 1 of 7) 5' UTR (NM_003381, exon 1 of 7) 137 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 292.666-5 chr14 55944405 55944672 + 1.33333 NA Intergenic Intergenic -147864 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 258.333-15 chr5 93671966 93672286 + 1.33333 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -51338 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 326.167-2 chr12 62331134 62331618 + 1.33333 NA intron (NR_147082, intron 6 of 21) MER5A|DNA|hAT-Charlie 70972 NR_147079 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 229.667-32 chr5 77908138 77908404 + 1.33333 NA intron (NR_105012, intron 1 of 1) intron (NR_105012, intron 1 of 1) 23615 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 365.333 chr1 39981847 39982327 + 1.33333 NA Intergenic Intergenic 26942 NM_001287809 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 204.5-38 chrX 151753285 151753676 + 1.33333 NA Intergenic Intergenic 18734 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 189-46 chr5 131003309 131003576 + 1.33333 NA Intergenic L1MA8|LINE|L1 161814 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 197.833-15 chr15 57526306 57526544 + 1.33333 NA intron (NM_032866, intron 12 of 18) intron (NM_032866, intron 12 of 18) -65479 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 295-2 chr10 26488494 26488799 + 1.33333 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 50305 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 166.833-5 chr10 73358727 73359062 + 1.33333 NA promoter-TSS (NM_001350933) promoter-TSS (NM_001350933) -30 NM_001367801 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 419-9 chr2 100730210 100730700 + 1.33333 NA Intergenic Intergenic -89684 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 193-15 chr17 11239930 11240232 + 1.33333 NA Intergenic Intergenic -1132 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 241.333-22 chr3 166961884 166962191 + 1.33333 NA Intergenic Intergenic 63354 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 303.167-9 chrX 129606201 129606919 + 1.33333 NA Intergenic L2c|LINE|L2 48396 NM_017413 8862 Hs.303084 NM_017413 ENSG00000171388 APLN APEL|XNPEP2 apelin protein-coding 205.167-27 chr7 41411922 41412148 + 1.33333 NA Intergenic L1MA9|LINE|L1 -281884 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 226.833-2 chr1 185043451 185043722 + 1.33333 NA Intergenic Intergenic -1972 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 218.833-2 chr10 7120338 7120625 + 1.33333 NA Intergenic Intergenic 66303 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 252.333-13 chr6 22106923 22107159 + 1.33333 NA intron (NR_015410, intron 8 of 11) intron (NR_015410, intron 8 of 11) 40152 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 380.5-4 chr12 103801917 103802405 + 1.33333 NA intron (NM_001031701, intron 4 of 13) intron (NM_001031701, intron 4 of 13) 39073 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 259.666-3 chr2 35165023 35165422 + 1.33333 NA Intergenic Intergenic -306183 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 241.333-12 chr14 61476913 61477247 + 1.33333 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 93114 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 235.667-14 chr15 79430498 79430834 + 1.33333 NA Intergenic Intergenic -1850 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 252-27 chr3 18282871 18283237 + 1.33333 NA Intergenic Intergenic 142285 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 537.667 chr1 26261447 26261873 + 1.33333 NA intron (NM_022778, intron 7 of 13) FLAM_C|SINE|Alu -7619 NM_001281518 64793 Hs.63795 NM_022778 ENSG00000130695 CEP85 CCDC21 centrosomal protein 85 protein-coding 269.833-11 chr5 179860828 179861276 + 1.33333 NA non-coding (NR_134283, exon 2 of 2) non-coding (NR_134283, exon 2 of 2) 2049 NR_134283 100996419 Hs.314414 NR_134283 ENSG00000245317 LOC100996419 - uncharacterized LOC100996419 ncRNA 223.833-17 chr6 86715891 86716231 + 1.33333 NA Intergenic L1MEb|LINE|L1 -221467 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 168-17 chr14 25687724 25687931 + 1.33333 NA Intergenic L1ME3|LINE|L1 -637530 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 239.334-6 chr19 29065193 29065452 + 1.33333 NA Intergenic Intergenic 62767 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 181.666-5 chr21 21715687 21715913 + 1.33333 NA Intergenic LTR88b|LTR|Gypsy? 21519 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 230.833-20 chr8 139795226 139795491 + 1.33333 NA intron (NM_001160372, intron 21 of 22) MIR3|SINE|MIR -92235 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 198-28 chr3 6232002 6232252 + 1.33333 NA Intergenic MamGypLTR3|LTR|Gypsy 573322 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 165-45 chr6 55447115 55447376 + 1.33333 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 119776 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 268.333-7 chr15 53197493 53197798 + 1.33333 NA Intergenic Intergenic 81280 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 334.333-4 chr12 15201211 15201667 + 1.33333 NA intron (NM_032918, intron 2 of 4) MIR|SINE|MIR 19978 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 325.499-2 chr15 45439588 45440161 + 1.33333 NA Intergenic LTR56|LTR|ERV1 6824 NR_030599 100126311 NR_030599 ENSG00000284386 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 299.834-15 chr8 137849705 137850027 + 1.33333 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 233679 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 408.5 chr1 30105901 30106559 + 1.33333 NA Intergenic MIRb|SINE|MIR -68618 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 281.999 chr13 79385026 79385289 + 1.33333 NA intron (NM_022118, intron 1 of 20) intron (NM_022118, intron 1 of 20) 21064 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 407.666-3 chr15 80706830 80707193 + 1.33333 NA intron (NM_021214, intron 1 of 2) intron (NM_021214, intron 1 of 2) 11701 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 192.333-46 chr6 54244242 54244591 + 1.33333 NA intron (NM_138569, intron 11 of 12) intron (NM_138569, intron 11 of 12) -64025 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 313.167-3 chr10 61733531 61734103 + 1.33333 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 70856 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 165.666-3 chr12 15704240 15704415 + 1.33333 NA intron (NM_004447, intron 1 of 20) L1MB3|LINE|L1 85061 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 269-36 chrX 135476873 135477102 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR -43673 NM_001351603 203522 Hs.496829 NM_182540 ENSG00000165359 INTS6L DDX26B integrator complex subunit 6 like protein-coding 257.333-23 chr6 47711683 47712049 + 1.33333 NA intron (NM_001347855, intron 4 of 9) intron (NM_001347855, intron 4 of 9) 13286 NM_153838 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 298.833-2 chr10 51970869 51971310 + 1.33333 NA intron (NM_001098512, intron 5 of 17) L1ME3|LINE|L1 -271494 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 173-17 chr14 88854098 88854477 + 1.33333 NA intron (NR_159362, intron 8 of 14) intron (NR_159362, intron 8 of 14) 29636 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 242.666-5 chr10 105465743 105466009 + 1.33333 NA Intergenic MIR|SINE|MIR 354457 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 229.166 chr1 237979509 237979774 + 1.33333 NA Intergenic HAL1ME|LINE|L1 -88719 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 267.333-27 chr8 115632398 115632688 + 1.33333 NA intron (NM_014112, intron 1 of 6) L1ME3A|LINE|L1 35470 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 360.999 chr1 176385565 176385964 + 1.33333 NA Intergenic Intergenic -77411 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 279.667-26 chr8 117947878 117948233 + 1.33333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -27142 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 301.833-7 chr22 22954949 22955295 + 1.33333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 67306 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 227.666-4 chr13 99361346 99361639 + 1.33333 NA intron (NR_026644, intron 7 of 8) intron (NR_026644, intron 7 of 8) 5361 NR_030353 693208 NR_030353 ENSG00000207719 MIR623 MIRN623|hsa-mir-623 microRNA 623 ncRNA 313.833-2 chr11 6481313 6481722 + 1.33333 NA promoter-TSS (NM_001370411) promoter-TSS (NM_001370411) 16 NM_012192 26515 Hs.54943 NM_012192 ENSG00000132286 TIMM10B FXC1|TIM10B|Tim9b translocase of inner mitochondrial membrane 10B protein-coding 319.166-4 chr6 37819100 37819639 + 1.33333 NA promoter-TSS (NM_021943) promoter-TSS (NM_021943) -358 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 164.667-42 chr5 39218516 39218742 + 1.33333 NA intron (NM_001349333, intron 1 of 19) MIR|SINE|MIR 934 NM_001349333 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 201-12 chr16 1782671 1782983 + 1.33333 NA promoter-TSS (NM_001284501) promoter-TSS (NM_001284501) -133 NM_012225 10101 Hs.256549 NM_012225 ENSG00000095906 NUBP2 CFD1|CIAO6|NBP 2|NUBP1 nucleotide binding protein 2 protein-coding 335.833-8 chr3 83918996 83919340 + 1.33333 NA Intergenic HAL1b|LINE|L1 950407 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 249.166 chr13 99438076 99438415 + 1.33333 NA Intergenic L1M2|LINE|L1 61061 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 270-22 chr18 13853873 13854158 + 1.33333 NA Intergenic L1MD2|LINE|L1 29866 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 177-35 chr6 62890953 62891390 + 1.33333 NA Intergenic Intergenic 428806 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 248.334-7 chr20 10463582 10463927 + 1.33333 NA intron (NM_001009608, intron 2 of 7) HAL1|LINE|L1 28449 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 185.167-21 chr22 37435183 37435331 + 1.33333 NA Intergenic Intergenic -7778 NM_052906 114794 Hs.344170 NM_052906 ENSG00000166897 ELFN2 LRRC62|PPP1R29 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding 206.833-7 chr19 12745200 12745426 + 1.33333 NA intron (NM_004317, intron 2 of 6) intron (NM_004317, intron 2 of 6) -6478 NM_017682 54831 Hs.435611 NM_017682 ENSG00000039987 BEST2 VMD2L1 bestrophin 2 protein-coding 310.666-7 chr8 69832476 69833157 + 1.33333 NA 5' UTR (NM_001146008, exon 1 of 8) 5' UTR (NM_001146008, exon 1 of 8) 353 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 456.499 chr1 156838773 156839339 + 1.33333 NA intron (NM_001007792, intron 1 of 16) intron (NM_001007792, intron 1 of 16) 20061 NM_014215 3645 Hs.248138 NM_014215 ENSG00000027644 INSRR IRR insulin receptor related receptor protein-coding 227.333-29 chr5 52908486 52908750 + 1.33333 NA intron (NM_181501, intron 12 of 28) intron (NM_181501, intron 12 of 28) -80734 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 262.666-8 chr8 49854450 49854790 + 1.33333 NA Intergenic Intergenic -55176 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 302-9 chr2 126970572 126970817 + 1.33333 NA Intergenic Intergenic 71804 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 224.666-6 chr20 14556212 14556496 + 1.33333 NA intron (NR_104193, intron 1 of 4) L1MDa|LINE|L1 1970 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 270.666-4 chr18 2063894 2064306 + 1.33333 NA Intergenic L1MA8|LINE|L1 507405 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 296-8 chr2 112691033 112691331 + 1.33333 NA Intergenic AluJb|SINE|Alu -30304 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 241.666-8 chr7 49547640 49547881 + 1.33333 NA Intergenic L1MEg|LINE|L1 -225878 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 365.833 chr1 158169873 158170471 + 1.33333 NA Intergenic MER34B-int|LTR|ERV1 -9775 NM_001766 912 Hs.1799 NM_001766 ENSG00000158473 CD1D CD1A|R3|R3G1 CD1d molecule protein-coding 247-29 chr5 164014256 164014574 + 1.33333 NA Intergenic Intergenic 452987 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 181.5-57 chr9 86435520 86435824 + 1.33333 NA Intergenic Intergenic -81262 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 509.501-2 chr6 105403182 105403695 + 1.33333 NA promoter-TSS (NM_002726) promoter-TSS (NM_002726) -356 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 187.667-43 chr8 121516230 121516489 + 1.33333 NA Intergenic L1MCa|LINE|L1 -122987 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 289.666-6 chr7 7231329 7231778 + 1.33333 NA intron (NM_020156, intron 1 of 3) L1MEg|LINE|L1 -23601 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 416.5-4 chr18 3884963 3885646 + 1.33333 NA promoter-TSS (NR_106776) promoter-TSS (NR_106776) -49 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 177-23 chr2 219950664 219950878 + 1.33333 NA Intergenic Intergenic -44206 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 311.499 chr18 9522824 9523099 + 1.33333 NA intron (NM_006788, intron 4 of 9) intron (NM_006788, intron 4 of 9) 47448 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 166.666-6 chr3 174205384 174205553 + 1.33333 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -284672 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 282-7 chr11 106470465 106470884 + 1.33333 NA Intergenic Intergenic 219267 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 235.666-4 chr5 44305470 44305739 + 1.33333 NA intron (NM_004465, intron 2 of 2) intron (NM_004465, intron 2 of 2) -83128 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 246.666-7 chr4 104164696 104165077 + 1.33333 NA Intergenic Intergenic -326079 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 314.5-17 chr8 139386682 139387067 + 1.33333 NA Intergenic Intergenic 316249 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 261.167-9 chr15 74320820 74321197 + 1.33333 NA intron (NM_182791, intron 1 of 8) intron (NM_182791, intron 1 of 8) 2449 NM_182791 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 194.667-25 chr17 34102435 34102883 + 1.33333 NA intron (NM_001094, intron 1 of 9) L1ME2z|LINE|L1 54147 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 300.666 chr10 107703736 107704192 + 1.33333 NA Intergenic Intergenic 365329 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 201-33 chr4 65527430 65527702 + 1.33333 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 141922 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 328-6 chr12 60650372 60650861 + 1.33333 NA Intergenic Intergenic 961246 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 231.333 chr1 28032528 28032765 + 1.33333 NA intron (NM_001282562, intron 5 of 16) intron (NM_001282562, intron 5 of 16) 55964 NM_001282560 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 184-17 chr12 17929244 17929468 + 1.33333 NA Intergenic Intergenic 160837 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 333.666-2 chr4 13546423 13546994 + 1.33333 NA non-coding (NR_015450, exon 1 of 1) non-coding (NR_015450, exon 1 of 1) 1116 NR_015450 285548 Hs.529284 NR_015450 LINC01096 - long intergenic non-protein coding RNA 1096 ncRNA 255-33 chr5 138449858 138450159 + 1.33333 NA Intergenic Intergenic 10951 NR_073449 51308 Hs.416090 NM_016606 ENSG00000132563 REEP2 C5orf19|SGC32445|SPG72|Yip2d receptor accessory protein 2 protein-coding 425.333 chr10 47743270 47743652 + 1.33333 NA promoter-TSS (NR_134489) promoter-TSS (NR_134489) -238 NR_134489 102724593 Hs.663831 NR_134489 LOC102724593 - uncharacterized LOC102724593 ncRNA 284.666-8 chr6 18663795 18664035 + 1.33333 NA intron (NR_149116, intron 4 of 7) intron (NR_149116, intron 4 of 7) 92131 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 264.333-16 chr2 193558999 193559256 + 1.33333 NA Intergenic Intergenic -785142 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 260.666-5 chr5 24261488 24261768 + 1.33333 NA Intergenic Intergenic 310280 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 279.999 chr10 100934156 100934448 + 1.33333 NA intron (NM_018121, intron 9 of 19) L1ME4b|LINE|L1 21339 NM_001243770 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 271.833-4 chr11 12164115 12164560 + 1.33333 NA TTS (NR_106739) TTS (NR_106739) 654 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 295.333-8 chr14 56776537 56776913 + 1.33333 NA Intergenic Intergenic 28942 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 218.5-33 chr8 125140926 125141284 + 1.33333 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 49245 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 272.666-2 chr10 88077560 88077958 + 1.33333 NA Intergenic Intergenic 214134 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 248-24 chr20 53900463 53900766 + 1.33333 NA Intergenic Intergenic -24905 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 267.667-18 chr8 121319362 121319895 + 1.33333 NA Intergenic Intergenic -319718 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 231.333-19 chr14 88828595 88828945 + 1.33333 NA intron (NR_159362, intron 1 of 14) intron (NR_159362, intron 1 of 14) 4119 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 436.499 chr21 28316147 28316857 + 1.33333 NA Intergenic Intergenic -87835 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 301.333-16 chr3 178032438 178032791 + 1.33333 NA Intergenic Intergenic 215749 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 281-18 chr4 149137810 149138253 + 1.33333 NA Intergenic Intergenic -16264 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 296.166-2 chr2 12534879 12535186 + 1.33333 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -181840 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 186-11 chr15 71957570 71957750 + 1.33333 NA intron (NM_006901, intron 14 of 41) intron (NM_006901, intron 14 of 41) 147106 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 388-4 chr15 71296767 71297158 + 1.33333 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -107903 NR_120351 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 343.166 chr1 219736049 219736318 + 1.33333 NA Intergenic Intergenic -123038 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 271.5-15 chr18 1604104 1604498 + 1.33333 NA Intergenic LTR37-int|LTR|ERV1 -244672 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 301.666-3 chr1 182751899 182752261 + 1.33333 NA Intergenic Intergenic -37369 NM_030769 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 210.5-23 chr2 135129838 135130111 + 1.33333 NA intron (NM_001172435, intron 11 of 24) intron (NM_001172435, intron 11 of 24) -6654 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 211.333-35 chr4 140882844 140883119 + 1.33333 NA intron (NM_020724, intron 6 of 6) L1M4c|LINE|L1 -126596 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 211.667-22 chr2 166122325 166122746 + 1.33333 NA intron (NR_110260, intron 2 of 11) intron (NR_110260, intron 2 of 11) 5485 NM_001353948 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 319.166-3 chr19 19138613 19139075 + 1.33333 NA promoter-TSS (NM_001256766) promoter-TSS (NM_001256766) -366 NM_001256766 54929 Hs.631629 NM_017814 ENSG00000064545 TMEM161A AROS-29 transmembrane protein 161A protein-coding 262.166-9 chr7 110788003 110788203 + 1.33333 NA intron (NM_001350963, intron 5 of 5) L2a|LINE|L2 -302903 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 289.333-29 chr8 13443984 13444347 + 1.33333 NA intron (NM_024767, intron 2 of 4) L1P1|LINE|L1 70686 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 321.999-6 chr8 109971759 109972214 + 1.33333 NA intron (NM_014379, intron 3 of 3) intron (NM_014379, intron 3 of 3) 3785 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 294.333-10 chr2 155222684 155222976 + 1.33333 NA Intergenic Intergenic 524135 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 237.333-7 chr11 113533872 113534078 + 1.33333 NA Intergenic MIR|SINE|MIR -58577 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 349.333-5 chr2 89782220 89782608 + 1.33333 NA Intergenic Intergenic -144507 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 362.999-2 chr6 143294142 143294576 + 1.33333 NA intron (NM_016108, intron 4 of 5) L2b|LINE|L2 129577 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 210.5-28 chr22 47578602 47578918 + 1.33333 NA Intergenic MER4A1|LTR|ERV1 52809 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 253.333-30 chr5 35767901 35768177 + 1.33333 NA intron (NM_024867, intron 26 of 36) (GTT)n|Simple_repeat|Simple_repeat -88852 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 258.334-5 chr22 27803495 27803733 + 1.33333 NA Intergenic Intergenic -1858 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 247-36 chr9 27373376 27373792 + 1.33333 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -76434 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 303.833-13 chr7 54388904 54389180 + 1.33333 NA Intergenic PABL_A-int|LTR|ERV1 58345 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 204.833-3 chr10 41859779 41859987 + 1.33333 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 508162 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 241.833-7 chr2 45402018 45402270 + 1.33333 NA intron (NM_018079, intron 19 of 20) intron (NM_018079, intron 19 of 20) -147203 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 241.666 chr1 68150872 68151152 + 1.33333 NA intron (NM_001002292, intron 5 of 11) intron (NM_001002292, intron 5 of 11) 32598 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 257.5-23 chr3 194135903 194136140 + 1.33333 NA promoter-TSS (NM_005524) promoter-TSS (NM_005524) -127 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 244.666-11 chr8 53003671 53003856 + 1.33333 NA Intergenic Intergenic 63855 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 237.333-23 chr2 191679009 191679271 + 1.33333 NA intron (NR_045623, intron 2 of 6) intron (NR_045623, intron 2 of 6) 1004 NR_045623 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 276.999 chr3 127272941 127273157 + 1.33333 NA Intergenic L1MEd|LINE|L1 14997 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 288.334-11 chr6 69290617 69291105 + 1.33333 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 505605 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 260.833-16 chr8 79326315 79326684 + 1.33333 NA Intergenic Intergenic -5689 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 202-10 chr13 99176721 99176971 + 1.33333 NA Intergenic MIR|SINE|MIR 23909 NR_036532 100289373 Hs.225914 NR_036531 ENSG00000228889 UBAC2-AS1 - UBAC2 antisense RNA 1 ncRNA 401.833-3 chr9 75063525 75063990 + 1.33333 NA intron (NM_001330679, intron 9 of 9) intron (NM_001330679, intron 9 of 9) 24398 NM_001330679 54981 Hs.494186 NM_017881 ENSG00000106733 NMRK1 C9orf95|NRK1|bA235O14.2 nicotinamide riboside kinase 1 protein-coding 343.333-13 chr8 74423441 74423936 + 1.33333 NA intron (NM_001362931, intron 5 of 5) LTR68|LTR|ERV1 73285 NM_018972 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 224-29 chr21 31362738 31362968 + 1.33333 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -18499 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 171-29 chr2 35978262 35978559 + 1.33333 NA Intergenic L1ME4b|LINE|L1 377160 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 285.499-3 chr9 37472060 37472321 + 1.33333 NA Intergenic AluJb|SINE|Alu -6740 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 325.333-3 chr11 112967483 112967749 + 1.33333 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -4156 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 308-7 chr15 70863536 70863870 + 1.33333 NA intron (NM_001284357, intron 1 of 16) LTR88b|LTR|Gypsy? -9546 NM_018357 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 170.666 chr10 12707428 12707606 + 1.33333 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) 17836 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 184-16 chr11 86497379 86497552 + 1.33333 NA intron (NM_001014811, intron 5 of 13) intron (NM_001014811, intron 5 of 13) 122578 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 257.666-6 chr7 47886604 47887048 + 1.33333 NA intron (NM_138295, intron 17 of 56) MSTB|LTR|ERVL-MaLR 61665 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 256-34 chrX 87490203 87490436 + 1.33333 NA Intergenic Intergenic -27483 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 296.666 chr12 20173646 20174036 + 1.33333 NA Intergenic L1MA3|LINE|L1 -45940 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 219.833-22 chr3 112328801 112329140 + 1.33333 NA intron (NR_147411, intron 3 of 4) L1M5|LINE|L1 -3603 NM_001365854 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 362.333-6 chr14 59275398 59275915 + 1.33333 NA intron (NM_001270520, intron 2 of 24) intron (NM_001270520, intron 2 of 24) 12215 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 328.833-11 chr8 107224112 107224497 + 1.33333 NA Intergenic MIRb|SINE|MIR 112211 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 194.666-8 chr2 120741177 120741392 + 1.33333 NA intron (NM_001371271, intron 1 of 13) intron (NM_001371271, intron 1 of 13) 5416 NM_001371271 262.666-7 chr8 15243047 15243265 + 1.33333 NA Intergenic Intergenic -4725 NM_139167 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 173.333-23 chr3 98270999 98271144 + 1.33333 NA Intergenic L1M1|LINE|L1 6827 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 294.333-2 chr11 35412246 35412537 + 1.33333 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 7167 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 177-6 chr11 32467132 32467416 + 1.33333 NA Intergenic AluSx|SINE|Alu 31235 NR_120546 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 268-11 chr11 44201136 44201436 + 1.33333 NA intron (NM_207122, intron 9 of 13) intron (NM_207122, intron 9 of 13) 105089 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 260.667 chr1 8915159 8915569 + 1.33333 NA Intergenic Tigger15a|DNA|TcMar-Tigger -30504 NM_001215 765 Hs.100322 NM_001215 ENSG00000131686 CA6 CA-VI|GUSTIN carbonic anhydrase 6 protein-coding 357.834 chr1 189960028 189960383 + 1.33333 NA Intergenic Intergenic 515805 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 353.999 chr14 53464947 53465259 + 1.33333 NA Intergenic L3|LINE|CR1 311749 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 289.333-19 chr3 142365317 142365661 + 1.33333 NA intron (NM_019001, intron 27 of 41) intron (NM_019001, intron 27 of 41) 82548 NM_001282857 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 319.334-10 chr4 87151711 87152095 + 1.33333 NA Intergenic Intergenic 68365 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 303.333-17 chr7 45235898 45236244 + 1.33333 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat 78280 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 233.333-36 chr9 98806494 98806733 + 1.33333 NA Intergenic L2c|LINE|L2 -1057 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 170.166-3 chr17 79708843 79709041 + 1.33333 NA non-coding (NR_109783, exon 2 of 2) non-coding (NR_109783, exon 2 of 2) 1676 NR_109783 100652929 Hs.559249 NR_109783 ENSG00000267719 LINC02078 HP09025 long intergenic non-protein coding RNA 2078 ncRNA 315.666-5 chr4 46308969 46309341 + 1.33333 NA intron (NM_001114175, intron 5 of 8) intron (NM_001114175, intron 5 of 8) 80224 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 214-8 chr11 69281984 69282225 + 1.33333 NA Intergenic MLT1F|LTR|ERVL-MaLR -12051 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 462.333-3 chr2 39069549 39070138 + 1.33333 NA intron (NM_005633, intron 1 of 22) AluSx1|SINE|Alu 50620 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 219-38 chr8 138696970 138697278 + 1.33333 NA intron (NM_152888, intron 32 of 64) intron (NM_152888, intron 32 of 64) -199394 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 302-3 chr1 219304654 219305007 + 1.33333 NA Intergenic Intergenic 129861 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 233.333-27 chr6 73704064 73704547 + 1.33333 NA intron (NM_001159588, intron 2 of 31) intron (NM_001159588, intron 2 of 31) 8102 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 258.499-2 chr9 96538173 96538366 + 1.33333 NA intron (NR_147239, intron 7 of 14) intron (NR_147239, intron 7 of 14) 28562 NM_001077181 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 213-11 chr11 80613499 80613737 + 1.33333 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat 149185 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 335.999 chr11 10017967 10018333 + 1.33333 NA intron (NM_030962, intron 6 of 39) intron (NM_030962, intron 6 of 39) 179008 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 240.667-17 chr16 74596568 74596874 + 1.33333 NA intron (NR_027264, intron 1 of 26) intron (NR_027264, intron 1 of 26) 10393 NR_027264 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 247.667-22 chr20 35997691 35997923 + 1.33333 NA intron (NM_001365709, intron 8 of 11) intron (NM_001365709, intron 8 of 11) 29217 NM_001304367 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 287.333-23 chr9 100222098 100222520 + 1.33333 NA intron (NM_001318381, intron 4 of 17) MIR|SINE|MIR 123066 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 241.999 chr1 16963434 16963625 + 1.33333 NA intron (NM_014675, intron 27 of 36) intron (NM_014675, intron 27 of 36) 17091 NM_002403 4237 Hs.389137 NM_002403 ENSG00000117122 MFAP2 MAGP|MAGP-1|MAGP1 microfibril associated protein 2 protein-coding 242.666-7 chr15 62893644 62894003 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR 69866 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 228-6 chr1 247408517 247408857 + 1.33333 NA Intergenic Intergenic -7469 NM_001127461 114548 Hs.159483 NM_004895 ENSG00000162711 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1 NLR family pyrin domain containing 3 protein-coding 234.5-34 chr5 25965366 25965658 + 1.33333 NA Intergenic MER65-int|LTR|ERV1 774559 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 441.666-2 chr2 32549867 32550266 + 1.33333 NA intron (NM_016252, intron 65 of 73) intron (NM_016252, intron 65 of 73) 17913 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 247.333-18 chr4 70237085 70237387 + 1.33333 NA Intergenic Intergenic -5380 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 295.667-6 chr13 107652161 107652488 + 1.33333 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -121076 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 411.333-10 chr7 34746092 34746625 + 1.33333 NA intron (NR_015356, intron 2 of 4) MER44A|DNA|TcMar-Tigger 11914 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 276-17 chr3 100706488 100706799 + 1.33333 NA Intergenic Intergenic -2647 NM_001007565 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 396.334-5 chr20 6478363 6478783 + 1.33333 NA intron (NR_109953, intron 3 of 3) HAL1b|LINE|L1 51841 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 473.167-3 chr2 126111426 126112199 + 1.33333 NA intron (NR_146970, intron 3 of 3) L2c|LINE|L2 6173 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 311.666-9 chr4 47760395 47760835 + 1.33333 NA intron (NM_006587, intron 4 of 21) Tigger1|DNA|TcMar-Tigger -70730 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 200-28 chr3 37360125 37360470 + 1.33333 NA intron (NM_001172713, intron 22 of 22) L1ME4b|LINE|L1 -25972 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 224.833-24 chr7 86367536 86367738 + 1.33333 NA Intergenic Intergenic -276272 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 194.333-3 chr1 46179633 46179955 + 1.33333 NA intron (NM_005727, intron 1 of 8) GA-rich|Low_complexity|Low_complexity -3306 NM_001303427 110117499 Hs.655387 NM_001303427 ENSG00000278139 LOC110117498-PIK3R3 - LOC110117498-PIK3R3 readthrough protein-coding 212-43 chr7 53279429 53279698 + 1.33333 NA Intergenic Intergenic 243930 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 329.333-10 chr20 10658534 10659025 + 1.33333 NA intron (NM_000214, intron 3 of 25) intron (NM_000214, intron 3 of 25) -9084 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 254.666-11 chr9 12074505 12074751 + 1.33333 NA Intergenic L1MC4|LINE|L1 -618757 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 233.333-16 chr2 70069318 70069650 + 1.33333 NA intron (NR_033872, intron 4 of 10) intron (NR_033872, intron 4 of 10) 17531 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 215.333-23 chr19 38407202 38407499 + 1.33333 NA intron (NM_174905, intron 7 of 7) intron (NM_174905, intron 7 of 7) 4215 NM_001351675 147965 Hs.355162 NM_174905 ENSG00000130244 FAM98C - family with sequence similarity 98 member C protein-coding 241.833-12 chr6 115886833 115887092 + 1.33333 NA Intergenic Intergenic -151769 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 285.333-13 chr8 113572363 113572724 + 1.33333 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -135604 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 219.666-2 chr12 64535009 64535316 + 1.33333 NA Intergenic Intergenic -75333 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 232.833-21 chr3 19437683 19437926 + 1.33333 NA intron (NM_144633, intron 7 of 15) intron (NM_144633, intron 7 of 15) -122873 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 264.666-11 chr9 127919411 127919634 + 1.33333 NA Intergenic Intergenic -2481 NM_175039 27090 Hs.3972 NM_014403 ENSG00000136840 ST6GALNAC4 IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein-coding 341.333-2 chr1 209901814 209902245 + 1.33333 NA Intergenic Intergenic -36145 NM_001256006 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 188.666-4 chr5 79399848 79400012 + 1.33333 NA intron (NM_001277077, intron 3 of 5) L1MEf|LINE|L1 113906 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 362.333-2 chr1 163361271 163361601 + 1.33333 NA Intergenic MER5A|DNA|hAT-Charlie 39482 NM_145697 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 287.333-10 chr3 16855982 16856263 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -28833 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 294-19 chr6 161669848 161670268 + 1.33333 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 199081 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 294.5-6 chr12 22851250 22851622 + 1.33333 NA Intergenic LFSINE_Vert|SINE|tRNA 226265 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 276.666-5 chr7 52062227 52062639 + 1.33333 NA Intergenic L1MC4|LINE|L1 -669177 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 313.333-6 chr10 96029816 96030184 + 1.33333 NA intron (NM_001349008, intron 34 of 34) AluJo|SINE|Alu -13583 NM_001134376 54619 Hs.596479 NM_019084 ENSG00000107443 CCNJ bA690P14.1 cyclin J protein-coding 326-9 chr22 36694197 36694562 + 1.33333 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 8479 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 188-45 chr6 94596642 94596917 + 1.33333 NA Intergenic Intergenic 878476 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 277.5-26 chr8 130668214 130668563 + 1.33333 NA Intergenic Intergenic -224714 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 180-59 chr8 17837653 17837869 + 1.33333 NA Intergenic Intergenic -36182 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 359.167-7 chr5 97058084 97058373 + 1.33333 NA Intergenic L1PB1|LINE|L1 84383 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 188-28 chr2 126938811 126939049 + 1.33333 NA Intergenic Intergenic 40040 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 164.667-34 chr21 28950334 28950581 + 1.33333 NA intron (NM_015565, intron 18 of 29) L1MD2|LINE|L1 42420 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 232.999 chr10 68527254 68527436 + 1.33333 NA exon (NM_001324313, exon 1 of 8) exon (NM_001324313, exon 1 of 8) 178 NM_001324313 8034 Hs.180408 NM_152707 ENSG00000122912 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 member 16 protein-coding 373.334-4 chr12 21719242 21719703 + 1.33333 NA Intergenic Intergenic 55234 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 294.833-4 chr16 62821635 62822003 + 1.33333 NA Intergenic LTR16E2|LTR|ERVL -785381 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 316.833-3 chr20 22309055 22309471 + 1.33333 NA Intergenic Intergenic -26462 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 278-21 chr3 50611629 50612038 + 1.33333 NA promoter-TSS (NM_145071) promoter-TSS (NM_145071) -29 NM_001243926 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 205.5-13 chr12 127329861 127330327 + 1.33333 NA intron (NR_110057, intron 2 of 2) intron (NR_110057, intron 2 of 2) 9978 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 177-3 chr10 32054420 32054637 + 1.33333 NA intron (NM_004521, intron 1 of 25) intron (NM_004521, intron 1 of 25) 1897 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 199.666-4 chr14 38803957 38804126 + 1.33333 NA intron (NR_039982, intron 4 of 4) L1MA5|LINE|L1 -78555 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 502.666 chr1 23745461 23745942 + 1.33333 NA intron (NM_003198, intron 1 of 10) intron (NM_003198, intron 1 of 10) 2335 NM_003198 6924 Hs.15535 NM_003198 ENSG00000011007 ELOA SIII|SIII p110|TCEB3|TCEB3A elongin A protein-coding 298.666-5 chr17 42524204 42524599 + 1.33333 NA Intergenic L1MB8|LINE|L1 10213 NR_049808 100847046 NR_049808 ENSG00000283929 MIR5010 mir-5010 microRNA 5010 ncRNA 202.5-12 chr11 100514102 100514386 + 1.33333 NA Intergenic Intergenic -173044 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 238.166-3 chr3 194524967 194525210 + 1.33333 NA Intergenic Intergenic 37948 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 270.833-18 chr8 9829229 9829530 + 1.33333 NA Intergenic Intergenic 73950 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 169.667-26 chr17 43724140 43724322 + 1.33333 NA Intergenic Intergenic 34560 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 248.5-22 chr2 152581339 152581585 + 1.33333 NA intron (NM_052905, intron 9 of 25) intron (NM_052905, intron 9 of 25) 135999 NM_001365599 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 238.5-27 chr4 146243173 146243586 + 1.33333 NA Intergenic Intergenic 28841 NM_001371071 314.833-4 chr12 117685443 117686061 + 1.33333 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 283238 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 386.999-2 chr2 2120611 2120947 + 1.33333 NA intron (NM_015025, intron 3 of 24) intron (NM_015025, intron 3 of 24) -198453 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 349.833 chr13 20197491 20198027 + 1.33333 NA Intergenic MER112|DNA|hAT-Charlie -4821 NM_004004 2706 Hs.524894 NM_004004 ENSG00000165474 GJB2 CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK gap junction protein beta 2 protein-coding 265.333-20 chr7 134358175 134358642 + 1.33333 NA Intergenic Intergenic -41478 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 243.333-7 chr11 15933999 15934316 + 1.33333 NA Intergenic L1MEd|LINE|L1 35464 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 324-17 chr5 150658714 150659108 + 1.33333 NA 3' UTR (NM_007286, exon 3 of 3) 3' UTR (NM_007286, exon 3 of 3) -1930 NM_133371 91977 Hs.91626 NM_133371 ENSG00000164591 MYOZ3 CS-3|CS3|FATZ-3|FRP3 myozenin 3 protein-coding 314.666-3 chr2 106937161 106937412 + 1.33333 NA Intergenic Intergenic -50177 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 512.001 chr4 30701573 30702329 + 1.33333 NA Intergenic Intergenic -18418 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 321.666-2 chr5 65664031 65664671 + 1.33333 NA exon (NM_001243737, exon 11 of 12) exon (NM_001243737, exon 11 of 12) 39324 NM_024941 80006 Hs.591760 NM_024941 ENSG00000113597 TRAPPC13 C5orf44|SHLD3 trafficking protein particle complex 13 protein-coding 398.333-5 chr13 64529868 64530355 + 1.33333 NA Intergenic LTR48|LTR|ERV1 -454100 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 201.833-11 chr20 13181737 13181890 + 1.33333 NA Intergenic MIRb|SINE|MIR -39461 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 196-20 chr2 88626153 88626316 + 1.33333 NA intron (NM_004836, intron 1 of 16) intron (NM_004836, intron 1 of 16) 1230 NM_004836 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 272-9 chr1 209587007 209587242 + 1.33333 NA intron (NM_020439, intron 1 of 12) intron (NM_020439, intron 1 of 12) 3410 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 198-25 chr20 56165841 56166022 + 1.33333 NA Intergenic L2a|LINE|L2 -82801 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 211.166 chr2 20969070 20969382 + 1.33333 NA Intergenic L2a|LINE|L2 74847 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 428.333-4 chr7 79297788 79298313 + 1.33333 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -154907 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 165.333-2 chr1 100460926 100461114 + 1.33333 NA intron (NM_001319211, intron 8 of 14) LTR33A|LTR|ERVL -77119 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 438.167-5 chr8 117473300 117473944 + 1.33333 NA Intergenic Intergenic -47091 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 177.333-4 chr1 218041852 218042201 + 1.33333 NA Intergenic Intergenic -1479 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 206.667-24 chr2 37458390 37458733 + 1.33333 NA Intergenic AluJb|SINE|Alu 113931 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 216.5-44 chr8 35212921 35213188 + 1.33333 NA Intergenic L1M4a1|LINE|L1 -22421 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 245.333-5 chr11 93146131 93146386 + 1.33333 NA 3' UTR (NM_001286139, exon 11 of 11) 3' UTR (NM_001286139, exon 11 of 11) 51168 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 363.666-4 chr2 54659620 54660014 + 1.33333 NA intron (NM_178313, intron 30 of 30) intron (NM_178313, intron 30 of 30) -65195 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 324.166-4 chr4 20418790 20419319 + 1.33333 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) 26865 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 183.333-23 chr14 55581888 55582387 + 1.33333 NA intron (NM_004986, intron 1 of 41) intron (NM_004986, intron 1 of 41) 1930 NR_073128 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 326.333-9 chr7 18039965 18040331 + 1.33333 NA Intergenic Plat_L3|LINE|CR1 -12302 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 234.333-34 chr6 139586861 139587097 + 1.33333 NA Intergenic Intergenic -112383 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 314.666-2 chr12 58875329 58875638 + 1.33333 NA intron (NM_153377, intron 16 of 18) intron (NM_153377, intron 16 of 18) 44063 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 412.166-2 chr2 132579121 132579714 + 1.33333 NA intron (NM_001508, intron 1 of 1) L1MD1|LINE|L1 90788 NM_001321235 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 293.666-5 chr2 173907072 173907395 + 1.33333 NA 3' UTR (NM_001017371, exon 5 of 5) 3' UTR (NM_001017371, exon 5 of 5) 56647 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 166-15 chr12 13132251 13132500 + 1.33333 NA Intergenic L1ME1|LINE|L1 -28708 NM_001367358 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 234.166 chr20 57092034 57092215 + 1.33333 NA Intergenic CpG -121572 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 264.499-2 chr5 55586931 55587184 + 1.33333 NA Intergenic AluSz|SINE|Alu -51979 NR_103485 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 187.333-27 chr2 196298100 196298271 + 1.33333 NA intron (NM_020760, intron 13 of 28) intron (NM_020760, intron 13 of 28) 38161 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 304.833-4 chr10 123044217 123044509 + 1.33333 NA intron (NM_001609, intron 6 of 10) (AATGAA)n|Simple_repeat|Simple_repeat 35357 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 360.333-8 chr4 73740525 73740994 + 1.33333 NA intron (NM_000584, intron 1 of 3) intron (NM_000584, intron 1 of 3) 190 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 306.5-11 chr2 72991926 72992483 + 1.33333 NA intron (NR_138476, intron 9 of 14) intron (NR_138476, intron 9 of 14) 66968 NM_001330407 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 243.5-17 chr2 147157490 147157805 + 1.33333 NA Intergenic Intergenic 570590 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 194.833-22 chr5 30215304 30215525 + 1.33333 NA Intergenic LTR78B|LTR|ERV1 334854 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 280.999 chr11 3848134 3848398 + 1.33333 NA Intergenic Intergenic -7307 NM_001665 391 Hs.501728 NM_001665 ENSG00000177105 RHOG ARHG ras homolog family member G protein-coding 289.333-27 chr6 131333776 131334039 + 1.33333 NA Intergenic Intergenic 83503 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 203.333-41 chr3 189073703 189073972 + 1.33333 NA Intergenic Intergenic -98134 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 179.5-5 chr10 100481374 100481780 + 1.33333 NA intron (NM_003393, intron 4 of 5) intron (NM_003393, intron 4 of 5) 18568 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 206.667-56 chr8 54935479 54935768 + 1.33333 NA Intergenic Intergenic -166405 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 316.833-5 chr4 167669478 167669835 + 1.33333 NA Intergenic L1MA5|LINE|L1 -422881 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 402.499-2 chr12 84648111 84648580 + 1.33333 NA Intergenic Intergenic 264454 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 294-7 chr16 1861001 1861364 + 1.33333 NA intron (NM_001163560, intron 4 of 13) MIRb|SINE|MIR 10982 NM_001163560 254528 Hs.729604 NM_152764 ENSG00000162039 MEIOB C16orf73|SPGF22|gs129 meiosis specific with OB-fold protein-coding 669.5-3 chr9 27080600 27081868 + 1.33333 NA Intergenic LTR71A|LTR|ERV1 -27907 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 254.333-2 chr10 4383220 4383601 + 1.33333 NA promoter-TSS (NR_108054) promoter-TSS (NR_108054) -836 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 241.499-2 chr12 57893861 57894105 + 1.33333 NA non-coding (NR_148947, exon 1 of 4) non-coding (NR_148947, exon 1 of 4) 2499 NR_148947 283387 Hs.727244 NR_148947 ENSG00000245651 LOC283387 - uncharacterized LOC283387 ncRNA 249.333-18 chr2 201860675 201861181 + 1.33333 NA intron (NM_001366386, intron 10 of 13) intron (NM_001366386, intron 10 of 13) 54349 NM_001261435 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 282-23 chr5 151449378 151449656 + 1.33333 NA intron (NM_001349740, intron 1 of 11) intron (NM_001349740, intron 1 of 11) 1914 NM_001308150 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 317.5-12 chr22 22890222 22890516 + 1.33333 NA intron (NM_001256296, intron 1 of 1) intron (NM_001256296, intron 1 of 1) 2553 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 218.666-3 chr14 55318874 55319095 + 1.33333 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 46830 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 315.833-5 chr16 12988887 12989256 + 1.33333 NA intron (NM_001145204, intron 2 of 4) MIRb|SINE|MIR 87473 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 193.666-5 chr2 12092729 12092905 + 1.33333 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 85701 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 282.166-2 chr17 61663323 61663576 + 1.33333 NA Intergenic Intergenic -72230 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 254.333-11 chr12 124224190 124224404 + 1.33333 NA intron (NM_001347902, intron 3 of 4) L1ME3A|LINE|L1 -64867 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 270.5-31 chr5 57274588 57274977 + 1.33333 NA Intergenic Charlie1|DNA|hAT-Charlie 60708 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 222.666-6 chr20 55318956 55319212 + 1.33333 NA Intergenic L2a|LINE|L2 -103959 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 204-43 chr8 140429461 140429643 + 1.33333 NA intron (NM_001160372, intron 4 of 22) MIR|SINE|MIR 28192 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 399.166-5 chr7 118904475 118904930 + 1.33333 NA Intergenic L1ME1|LINE|L1 679998 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 470.501-2 chr8 54657455 54657993 + 1.33333 NA Intergenic Intergenic 41628 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 192-27 chr4 137655009 137655296 + 1.33333 NA Intergenic Intergenic 109421 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 248-36 chr7 36291213 36291431 + 1.33333 NA intron (NM_030636, intron 6 of 7) intron (NM_030636, intron 6 of 7) 75918 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 258.166 chr10 119702564 119702796 + 1.33333 NA Intergenic Intergenic -23367 NM_001243195 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 325.666-5 chr21 23130423 23130766 + 1.33333 NA Intergenic L2|LINE|L2 51310 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 236.666-4 chr2 221574389 221574602 + 1.33333 NA promoter-TSS (NM_001304536) promoter-TSS (NM_001304536) -293 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 337.833-4 chr16 27762449 27762744 + 1.33333 NA intron (NM_015202, intron 19 of 27) intron (NM_015202, intron 19 of 27) -43567 NR_147898 100128079 Hs.610277 NR_147898 LOC100128079 - uncharacterized LOC100128079 ncRNA 265.333-10 chr18 63540176 63540547 + 1.33333 NA Intergenic L1M5|LINE|L1 -15799 NM_080474 89777 Hs.348541 NM_080474 ENSG00000166634 SERPINB12 YUKOPIN serpin family B member 12 protein-coding 195.667-3 chr10 76960886 76961374 + 1.33333 NA intron (NM_001271519, intron 20 of 28) Tigger1|DNA|TcMar-Tigger 73086 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 263.333-4 chr12 1192711 1193105 + 1.33333 NA intron (NM_001301248, intron 11 of 18) intron (NM_001301248, intron 11 of 18) 165160 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 311.999-3 chr7 25413530 25413940 + 1.33333 NA Intergenic Intergenic -185249 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 289.333-26 chr6 94963472 94963852 + 1.33333 NA Intergenic L1MD1|LINE|L1 613789 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 177.166-3 chr8 81632601 81632771 + 1.33333 NA Intergenic Intergenic -1409 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 265.999-3 chr18 76802965 76803198 + 1.33333 NA intron (NR_040024, intron 2 of 2) intron (NR_040024, intron 2 of 2) 19214 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 188.666 chr10 58920153 58920490 + 1.33333 NA Intergenic Intergenic -79197 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 215.333-42 chr7 34732651 34732865 + 1.33333 NA intron (NR_015356, intron 2 of 4) Tigger12c|DNA|TcMar-Tigger 25514 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 188.833-34 chr6 123379599 123379862 + 1.33333 NA intron (NM_001251987, intron 16 of 20) intron (NM_001251987, intron 16 of 20) -59874 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 396.334-2 chr11 47313594 47313925 + 1.33333 NA intron (NM_130476, intron 26 of 32) AluSg|SINE|Alu 38943 NM_000256 4607 Hs.524906 NM_000256 ENSG00000134571 MYBPC3 CMD1MM|CMH4|FHC|LVNC10|MYBP-C myosin binding protein C, cardiac protein-coding 413.833-6 chr7 72369835 72370276 + 1.33333 NA intron (NM_001363460, intron 1 of 5) L1ME1|LINE|L1 -32664 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 284-19 chr2 226687502 226687926 + 1.33333 NA Intergenic Intergenic -28921 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 250.667-41 chr7 95917432 95917977 + 1.33333 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 145198 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 298 chr1 172603453 172603902 + 1.33333 NA intron (NM_014283, intron 22 of 23) L1ME3A|LINE|L1 -55331 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 230.333-24 chr3 1235136 1235446 + 1.33333 NA intron (NM_001289080, intron 4 of 22) intron (NM_001289080, intron 4 of 22) 142267 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 232.333-26 chr9 73075130 73075351 + 1.33333 NA Intergenic L1ME3A|LINE|L1 -76625 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 240.5-9 chr16 27832764 27833280 + 1.33333 NA intron (NM_001109763, intron 4 of 6) L1MD1|LINE|L1 55135 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 232-10 chr11 20682164 20682427 + 1.33333 NA intron (NM_201551, intron 2 of 18) Charlie5|DNA|hAT-Charlie 12709 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 298-7 chr15 65269585 65270083 + 1.33333 NA intron (NM_001316943, intron 2 of 5) intron (NM_001316943, intron 2 of 5) 15757 NR_145768 109617003 NR_145768 ENSG00000206903 SNORA24B - small nucleolar RNA, H/ACA box 24B snoRNA 198.666-2 chr14 63820334 63820488 + 1.33333 NA Intergenic L1ME1|LINE|L1 -32554 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 334.667-8 chr2 73845148 73845439 + 1.33333 NA intron (NR_148670, intron 5 of 12) intron (NR_148670, intron 5 of 12) 16326 NM_001353968 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 191.666-7 chr2 109252634 109252878 + 1.33333 NA intron (NM_001099289, intron 1 of 9) MER47A|DNA|TcMar-Tigger 60869 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 560.167-3 chr22 41822717 41823385 + 1.33333 NA intron (NM_024821, intron 6 of 6) intron (NM_024821, intron 6 of 6) -10054 NR_103834 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 285.666-10 chr3 127547917 127548394 + 1.33333 NA Intergenic CpG -10375 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 175.834-3 chr14 60225195 60225497 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -20404 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 226.666 chr10 63161394 63161651 + 1.33333 NA Intergenic Intergenic 28194 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 285.166 chr7 7119230 7119553 + 1.33333 NA Intergenic L1MC4|LINE|L1 -22605 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 191.333-13 chr14 69590737 69591055 + 1.33333 NA Intergenic AluSx|SINE|Alu -16025 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 214.5-17 chr18 66498764 66499377 + 1.33333 NA Intergenic Intergenic 105020 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 175.333-17 chr15 44526910 44527067 + 1.33333 NA 3' UTR (NM_016396, exon 13 of 13) 3' UTR (NM_016396, exon 13 of 13) 9912 NR_034171 645212 Hs.594287 NR_034170 EIF3J-DT EIF3J-AS1 EIF3J divergent transcript ncRNA 227.666-10 chr9 764225 764466 + 1.33333 NA Intergenic MIRb|SINE|MIR 57668 NM_001354342 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 171-37 chr20 1417395 1417632 + 1.33333 NA Intergenic Intergenic -24341 NR_037661 100528031 Hs.471933 NR_037661 FKBP1A-SDCBP2 - FKBP1A-SDCBP2 readthrough (NMD candidate) ncRNA 393.667-5 chr7 85882250 85883065 + 1.33333 NA Intergenic Intergenic 461535 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 421.333-2 chr12 39437029 39437719 + 1.33333 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 5746 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 254.333-27 chr22 22721627 22721900 + 1.33333 NA Intergenic Intergenic 75451 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 445.333-10 chr6 87225517 87226025 + 1.33333 NA intron (NM_015021, intron 4 of 7) L3|LINE|CR1 70206 NM_001351444 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 226.5-23 chr2 120076706 120076985 + 1.33333 NA intron (NM_001330307, intron 7 of 16) intron (NM_001330307, intron 7 of 16) 63768 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 292.5-3 chr10 56549260 56549556 + 1.33333 NA Intergenic L1PA15|LINE|L1 -188135 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 421.999 chr10 3541813 3542166 + 1.33333 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) -39151 NR_155746 101927880 NR_155743 LINC02669 - long intergenic non-protein coding RNA 2669 ncRNA 332.499-2 chr18 24462584 24462908 + 1.33333 NA intron (NM_001143828, intron 1 of 1) intron (NM_001143828, intron 1 of 1) 2109 NM_021624 59340 Hs.287388 NM_021624 ENSG00000134489 HRH4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 209-31 chr6 55748519 55748943 + 1.33333 NA Intergenic Intergenic 126859 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 294.999-2 chr11 41908825 41909054 + 1.33333 NA Intergenic L1MEh|LINE|L1 176519 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 250-21 chr3 33032658 33032882 + 1.33333 NA intron (NM_001079811, intron 10 of 15) intron (NM_001079811, intron 10 of 15) 64062 NM_001079811 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 421.999-3 chr18 45910279 45910815 + 1.33333 NA exon (NM_020964, exon 23 of 44) exon (NM_020964, exon 23 of 44) 56782 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 309.333-21 chr7 4480504 4480837 + 1.33333 NA Intergenic L1PA13|LINE|L1 -201625 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 218.833-30 chrX 96372523 96372895 + 1.33333 NA Intergenic Intergenic -34807 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 306.333 chr10 81579474 81579774 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -295570 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 192.666-9 chr7 92497223 92497420 + 1.33333 NA intron (NM_001282677, intron 15 of 22) intron (NM_001282677, intron 15 of 22) -19375 NM_001130925 30816 NM_014590 ENSG00000242950 ERVW-1 ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV endogenous retrovirus group W member 1, envelope protein-coding 230-6 chr10 31528646 31528961 + 1.33333 NA 3' UTR (NM_001174095, exon 8 of 8) 3' UTR (NM_001174095, exon 8 of 8) -129048 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 287-14 chr18 55546374 55546693 + 1.33333 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) -35761 NM_001348211 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 404.501 chr12 60322676 60323348 + 1.33333 NA Intergenic Intergenic 633642 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 227.333-5 chr10 62593149 62593366 + 1.33333 NA intron (NM_199452, intron 1 of 6) LTR78B|LTR|ERV1 72809 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 204.166-2 chr6 80664617 80664851 + 1.33333 NA Intergenic Intergenic 558063 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 335.333-12 chr9 9625462 9625931 + 1.33333 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -173696 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 199-31 chr3 119712517 119712843 + 1.33333 NA intron (NM_033364, intron 5 of 17) AluSx1|SINE|Alu 9658 NM_001320317 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CFAP91|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 269 chr1 6793155 6793509 + 1.33333 NA intron (NR_146204, intron 1 of 2) intron (NR_146204, intron 1 of 2) 7878 NM_001195563 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 315.333-13 chr2 203405935 203406358 + 1.33333 NA intron (NM_001282926, intron 8 of 9) intron (NM_001282926, intron 8 of 9) 39262 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 278.666-13 chr9 89490770 89491036 + 1.33333 NA intron (NM_001371194, intron 1 of 15) MER58A|DNA|hAT-Charlie 4753 NM_001371195 180.833-21 chr6 87329730 87329969 + 1.33333 NA promoter-TSS (NM_198568) promoter-TSS (NM_198568) -571 NM_198568 375519 Hs.146727 NM_198568 ENSG00000164411 GJB7 CX25|bA136M9.1|connexin25 gap junction protein beta 7 protein-coding 276.166-4 chr7 127131894 127132320 + 1.33333 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -73923 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 211.333-14 chr14 32695253 32695526 + 1.33333 NA intron (NM_004274, intron 8 of 13) intron (NM_004274, intron 8 of 13) -243490 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 334.666-6 chr4 58630249 58630558 + 1.33333 NA Intergenic Intergenic -94075 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 252.833-13 chr5 18313091 18313455 + 1.33333 NA Intergenic Intergenic 505999 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 250-30 chr6 126824651 126824976 + 1.33333 NA Intergenic Intergenic -293858 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 269.166 chr10 111167090 111167435 + 1.33333 NA Intergenic L1ME3A|LINE|L1 52971 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 329.501-3 chr7 39453874 39454320 + 1.33333 NA intron (NM_001370959, intron 8 of 9) MER21C|LTR|ERVL -47751 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 214.666-8 chr7 29987270 29987509 + 1.33333 NA intron (NM_001145514, intron 1 of 7) intron (NM_001145514, intron 1 of 7) 2412 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 334.166-2 chr10 65369114 65369424 + 1.33333 NA Intergenic Intergenic -202156 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 210.5-24 chr2 167740140 167740305 + 1.33333 NA Intergenic Intergenic -78450 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 292.666-4 chr12 51421404 51421692 + 1.33333 NA intron (NM_001258401, intron 1 of 24) intron (NM_001258401, intron 1 of 24) -3283 NR_047672 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 211.5-37 chr4 85932299 85932541 + 1.33333 NA intron (NM_031305, intron 1 of 6) intron (NM_031305, intron 1 of 6) 2404 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 199.333-19 chr15 65824075 65824367 + 1.33333 NA Intergenic MIRb|SINE|MIR -31928 NM_001144823 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 210.667-15 chr14 60434582 60434826 + 1.33333 NA Intergenic Intergenic 51359 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 196.333-49 chr9 123009197 123009398 + 1.33333 NA intron (NM_012197, intron 10 of 25) intron (NM_012197, intron 10 of 25) -24346 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 169.333-23 chr14 44807554 44807793 + 1.33333 NA Intergenic Intergenic -8547 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 179.667-46 chr8 82044439 82044713 + 1.33333 NA Intergenic Intergenic -202290 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 233.666-2 chr13 38360415 38360615 + 1.33333 NA 3' UTR (NM_001286706, exon 6 of 6) 3' UTR (NM_001286706, exon 6 of 6) 10664 NR_104584 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 202.667-8 chr13 72770913 72771473 + 1.33333 NA intron (NM_014953, intron 11 of 20) intron (NM_014953, intron 11 of 20) 10707 NM_001322348 22894 Hs.744104 NM_014953 ENSG00000083520 DIS3 2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease protein-coding 178-36 chr6 35096549 35096850 + 1.33333 NA Intergenic MER65-int|LTR|ERV1 44640 NM_001366323 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 192.833-4 chr1 183942983 183943191 + 1.33333 NA intron (NM_015101, intron 10 of 11) intron (NM_015101, intron 10 of 11) 94641 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 169.667-7 chr1 214444330 214444575 + 1.33333 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 107150 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 323.666-2 chr1 118111594 118112035 + 1.33333 NA intron (NM_206996, intron 4 of 48) intron (NM_206996, intron 4 of 48) 73414 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 318.666 chr1 55449555 55449934 + 1.33333 NA Intergenic Intergenic 224103 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 168-53 chr9 35814377 35814647 + 1.33333 NA intron (NM_032593, intron 1 of 4) intron (NM_032593, intron 1 of 4) 530 NM_032593 84681 Hs.70573 NM_032593 ENSG00000137133 HINT2 HIT-17 histidine triad nucleotide binding protein 2 protein-coding 207-35 chrX 141371964 141372275 + 1.33333 NA Intergenic Intergenic -129602 NM_022661 64663 Hs.375036 NM_022661 ENSG00000198573 SPANXC CT11.3|CTp11|SPANX-C|SPANX-E|SPANXE SPANX family member C protein-coding 192.667-12 chr17 51861426 51861852 + 1.33333 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 297075 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 201.833-10 chr2 111049871 111050063 + 1.33333 NA intron (NM_001371254, intron 17 of 18) intron (NM_001371254, intron 17 of 18) 65621 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 263.166 chr10 15980787 15981060 + 1.33333 NA Intergenic Intergenic -120390 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 271.333-6 chr12 56664319 56664760 + 1.33333 NA intron (NM_001282601, intron 6 of 6) intron (NM_001282601, intron 6 of 6) -18555 NM_001686 506 Hs.406510 NM_001686 ENSG00000110955 ATP5F1B ATP5B|ATPMB|ATPSB|HEL-S-271 ATP synthase F1 subunit beta protein-coding 362.166-2 chr2 57506457 57506989 + 1.33333 NA Intergenic L1MD1|LINE|L1 -400928 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 217.333-39 chr6 73117667 73117976 + 1.33333 NA intron (NM_001160132, intron 7 of 13) intron (NM_001160132, intron 7 of 13) 25693 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 252.833-16 chr6 13672363 13672761 + 1.33333 NA intron (NM_005493, intron 2 of 13) L1MCa|LINE|L1 39273 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 432.333-4 chr16 68064476 68065161 + 1.33333 NA intron (NM_017803, intron 8 of 16) intron (NM_017803, intron 8 of 16) -20552 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 189-31 chr3 18824847 18825004 + 1.33333 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -323585 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 243.667-35 chr5 113465307 113465637 + 1.33333 NA intron (NM_001085377, intron 1 of 18) L1M5|LINE|L1 22981 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 175.666 chr1 215519168 215519319 + 1.33333 NA Intergenic Intergenic -48061 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 317.333-2 chr11 90562325 90562653 + 1.33333 NA intron (NR_104190, intron 2 of 6) L1PA16|LINE|L1 -6632 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 229.333-20 chr17 69557453 69557651 + 1.33333 NA Intergenic Intergenic -36435 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 288.833-5 chr12 68358544 68358962 + 1.33333 NA Intergenic Intergenic -26339 NM_001354972 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 347.834-11 chr9 113655559 113655905 + 1.33333 NA Intergenic Intergenic 61603 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 419-12 chr5 132951923 132952433 + 1.33333 NA intron (NM_014423, intron 1 of 20) L1ME3C|LINE|L1 11456 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 261.334-8 chr2 204142903 204143285 + 1.33333 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat 206346 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 192.333-17 chr15 57829367 57829601 + 1.33333 NA Intergenic Intergenic 122770 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 212.501 chr7 9499098 9499497 + 1.33333 NA Intergenic Intergenic -134973 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 207.167-9 chr2 150812446 150812671 + 1.33333 NA Intergenic Intergenic 183661 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 352.834-6 chr3 53103983 53104502 + 1.33333 NA intron (NM_052859, intron 9 of 12) intron (NM_052859, intron 9 of 12) 26193 NM_052859 91869 Hs.631910 NM_052859 ENSG00000163933 RFT1 CDG1N RFT1 homolog protein-coding 288.333-15 chr5 25482820 25483118 + 1.33333 NA Intergenic L1MEf|LINE|L1 292016 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 235.333-5 chr15 61926141 61926416 + 1.33333 NA intron (NM_001018088, intron 52 of 81) AluJr4|SINE|Alu 134169 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 265.5-20 chr3 192010463 192010712 + 1.33333 NA Intergenic L2a|LINE|L2 -228043 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 168.667-29 chr3 74467772 74467988 + 1.33333 NA intron (NM_020872, intron 3 of 21) intron (NM_020872, intron 3 of 21) 53260 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 367.834-3 chr16 30869933 30870359 + 1.33333 NA intron (NM_001286526, intron 5 of 5) intron (NM_001286526, intron 5 of 5) 5177 NR_039744 100616231 NR_039744 ENSG00000265991 MIR4519 - microRNA 4519 ncRNA 223.666-6 chr8 132200621 132200809 + 1.33333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -95450 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 264-7 chr10 97133244 97133601 + 1.33333 NA intron (NM_003061, intron 4 of 36) L1MB2|LINE|L1 30666 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 226.667-20 chr2 56706513 56706799 + 1.33333 NA Intergenic Intergenic -520886 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 299.333-18 chr7 45239903 45240261 + 1.33333 NA Intergenic Intergenic 82291 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 179.5-11 chr12 83934587 83934758 + 1.33333 NA Intergenic Intergenic 978127 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 288.499 chr11 31048932 31049198 + 1.33333 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) -56379 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 238-21 chr3 23430715 23431009 + 1.33333 NA intron (NM_001370225, intron 3 of 5) MER5A|DNA|hAT-Charlie 227535 NM_001370228 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 245-18 chr20 57258560 57258796 + 1.33333 NA intron (NM_001719, intron 1 of 6) intron (NM_001719, intron 1 of 6) 7963 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 509.833 chr1 88549250 88549959 + 1.33333 NA intron (NR_110682, intron 3 of 3) intron (NR_110682, intron 3 of 3) -134540 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 259.666-4 chr4 108493287 108493568 + 1.33333 NA Intergenic L1MA8|LINE|L1 -63806 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 180.666-4 chr4 8589899 8590090 + 1.33333 NA TTS (NM_080819) TTS (NM_080819) -2666 NM_003652 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 269.167-7 chr18 43396049 43396738 + 1.33333 NA Intergenic Intergenic -118903 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 186-38 chr6 132242749 132242981 + 1.33333 NA Intergenic Intergenic 108887 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 240-20 chr15 60793322 60793547 + 1.33333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 111865 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 222.5-5 chr1 202991085 202991368 + 1.33333 NA non-coding (NR_036557, exon 2 of 5) non-coding (NR_036557, exon 2 of 5) 16039 NR_036557 100506747 Hs.642024 NR_036557 LOC100506747 - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog pseudo 331.334-6 chr6 164109598 164110177 + 1.33333 NA Intergenic Intergenic -438403 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 223-4 chr10 58218521 58218833 + 1.33333 NA intron (NM_152230, intron 3 of 5) Tigger12c|DNA|TcMar-Tigger 49217 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 322.166 chr10 64526888 64527344 + 1.33333 NA Intergenic Intergenic -298412 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 204.666-4 chr3 97037339 97037546 + 1.33333 NA intron (NM_001080448, intron 3 of 17) L2c|LINE|L2 222848 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 238.833-15 chr4 173263528 173264022 + 1.33333 NA intron (NM_017423, intron 2 of 11) intron (NM_017423, intron 2 of 11) -4385 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 306.499-2 chr14 76811600 76811937 + 1.33333 NA intron (NM_001370747, intron 1 of 11) L2a|LINE|L2 1114 NM_001370746 23357 Hs.497448 NM_015305 ENSG00000013523 ANGEL1 Ccr4e|KIAA0759 angel homolog 1 protein-coding 184.833-8 chr11 56157606 56157909 + 1.33333 NA Intergenic LTR3B|LTR|ERVK 2560 NM_001004058 219453 Hs.553626 NM_001004058 ENSG00000181752 OR8K5 OR11-174 olfactory receptor family 8 subfamily K member 5 protein-coding 289.333-20 chr4 100719238 100719656 + 1.33333 NA Intergenic Intergenic -44334 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 219.666-7 chr8 106139338 106139561 + 1.33333 NA Intergenic Intergenic -78946 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 333-2 chr11 50596748 50597044 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 187749 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 258-23 chr21 25046002 25046269 + 1.33333 NA intron (NR_046198, intron 3 of 3) intron (NR_046198, intron 3 of 3) 205585 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 438.167-3 chr17 49567820 49568459 + 1.33333 NA intron (NR_103773, intron 1 of 2) CpG 5925 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 227.333-22 chr20 35123207 35123430 + 1.33333 NA intron (NM_001145025, intron 8 of 9) AluSp|SINE|Alu 24018 NR_026728 55741 Hs.720177 NM_018217 ENSG00000088298 EDEM2 C20orf31|C20orf49|bA4204.1 ER degradation enhancing alpha-mannosidase like protein 2 protein-coding 351.501-2 chr8 123808624 123809081 + 1.33333 NA intron (NM_144963, intron 21 of 23) (TA)n|Simple_repeat|Simple_repeat 40413 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 307.333-3 chr12 51953877 51954223 + 1.33333 NA intron (NM_020327, intron 1 of 8) intron (NM_020327, intron 1 of 8) 670 NM_020327 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor type 1B protein-coding 288.333-11 chr2 60909730 60909973 + 1.33333 NA intron (NM_002908, intron 4 of 10) AluSc|SINE|Alu 28277 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 266.667-8 chr14 90887995 90888320 + 1.33333 NA intron (NM_001322237, intron 14 of 16) L1MC5|LINE|L1 -71727 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 253-13 chr2 138072375 138072727 + 1.33333 NA Intergenic Intergenic -29333 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 236.666-2 chr12 50400699 50400931 + 1.33333 NA promoter-TSS (NM_001352322) promoter-TSS (NM_001352322) 6 NM_001352304 113251 Hs.26613 NM_052879 ENSG00000161813 LARP4 PP13296 La ribonucleoprotein domain family member 4 protein-coding 335.5-15 chr9 81016168 81016580 + 1.33333 NA Intergenic L1MC2|LINE|L1 673161 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 220-31 chr7 80098330 80098532 + 1.33333 NA Intergenic Intergenic -36400 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 290.667-3 chr10 26160083 26160593 + 1.33333 NA intron (NM_017433, intron 26 of 34) intron (NM_017433, intron 26 of 34) -55969 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 628.666-3 chr9 32583100 32583910 + 1.33333 NA Intergenic Intergenic -10321 NM_001199987 4712 Hs.493668 NM_002493 ENSG00000165264 NDUFB6 B17|CI NADH:ubiquinone oxidoreductase subunit B6 protein-coding 280.833-19 chr9 16701134 16701381 + 1.33333 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -25557 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 317.333-6 chr16 8654362 8654794 + 1.33333 NA Intergenic Intergenic -20039 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 240-12 chr12 63947353 63947590 + 1.33333 NA intron (NM_001346201, intron 1 of 21) L1ME1|LINE|L1 102771 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 462-3 chr7 85599413 85599948 + 1.33333 NA Intergenic Intergenic 178558 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 358.333-2 chr17 44124071 44124479 + 1.33333 NA promoter-TSS (NM_005474) promoter-TSS (NM_005474) -634 NM_001015053 10014 Hs.438782 NM_005474 ENSG00000108840 HDAC5 HD5|NY-CO-9 histone deacetylase 5 protein-coding 204.333-3 chr10 63216231 63216537 + 1.33333 NA intron (NM_001322258, intron 4 of 24) intron (NM_001322258, intron 4 of 24) 52839 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 254.333-28 chr3 19006696 19007095 + 1.33333 NA Intergenic MER63A|DNA|hAT-Blackjack -141615 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 216.666 chr1 41404472 41404695 + 1.33333 NA Intergenic Intergenic -28914 NR_135817 101929901 NR_135817 ENSG00000229901 LOC101929901 - uncharacterized LOC101929901 ncRNA 342.666-4 chr6 11802828 11803140 + 1.33333 NA Intergenic AluJr|SINE|Alu -23937 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 259.666-5 chr4 158260377 158260618 + 1.33333 NA Intergenic Intergenic 50011 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 238.5-25 chr3 184788919 184789265 + 1.33333 NA Intergenic Intergenic -15937 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LINC02069 - long intergenic non-protein coding RNA 2069 ncRNA 248-8 chr10 96830295 96830535 + 1.33333 NA TTS (NR_135921) TTS (NR_135921) -1651 NR_030338 693192 NR_030338 ENSG00000207976 MIR607 MIRN607|hsa-mir-607 microRNA 607 ncRNA 277.5-8 chr2 43668370 43668789 + 1.33333 NA intron (NM_172069, intron 2 of 29) L1ME4c|LINE|L1 7850 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 319.833-11 chr5 91418781 91419255 + 1.33333 NA non-coding (NR_027435, exon 3 of 3) non-coding (NR_027435, exon 3 of 3) -35701 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 273.167-17 chr8 109332709 109333206 + 1.33333 NA intron (NM_032869, intron 1 of 9) L2c|LINE|L2 1130 NM_032869 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 324.667-24 chrX 23679201 23679815 + 1.33333 NA intron (NM_006406, intron 4 of 6) AluSz|SINE|Alu 12015 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 323-11 chr17 78458999 78459440 + 1.33333 NA intron (NM_173628, intron 60 of 80) intron (NM_173628, intron 60 of 80) -25691 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 280.666-3 chr3 143972045 143972367 + 1.33333 NA promoter-TSS (NM_001134470) promoter-TSS (NM_001134470) 408 NM_173552 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 287.5-3 chr12 12819315 12819709 + 1.33333 NA intron (NM_201224, intron 2 of 10) L2c|LINE|L2 6166 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 241.333-20 chr20 8750421 8750912 + 1.33333 NA intron (NM_182734, intron 23 of 32) intron (NM_182734, intron 23 of 32) -80519 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 419.499-2 chr4 55554267 55554892 + 1.33333 NA Intergenic Intergenic -7670 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 217.333-5 chr10 76452994 76453492 + 1.33333 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -434801 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 297.5-11 chr17 63292743 63293091 + 1.33333 NA intron (NM_025185, intron 8 of 25) MIR|SINE|MIR 147350 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 218-10 chr12 45172381 45172646 + 1.33333 NA TTS (NR_037144) TTS (NR_037144) 43493 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 199-49 chr7 32536569 32536822 + 1.33333 NA intron (NM_015060, intron 1 of 15) MER21C|LTR|ERVL 41206 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 163.666-4 chr5 72777982 72778340 + 1.33333 NA Intergenic L1MA4|LINE|L1 -38430 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 201-19 chr2 35023146 35023313 + 1.33333 NA Intergenic L1M4|LINE|L1 345672 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 466.335 chr5 79132437 79132986 + 1.33333 NA TTS (NM_001713) TTS (NM_001713) 20902 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 193.833-13 chr17 50950512 50950815 + 1.33333 NA Intergenic Intergenic -82685 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 259.333-23 chr3 102438229 102438639 + 1.33333 NA intron (NM_001329788, intron 2 of 11) intron (NM_001329788, intron 2 of 11) 3419 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 278.666-10 chr3 183244082 183244303 + 1.33333 NA intron (NM_015078, intron 15 of 29) HERVL-int|LTR|ERVL -9061 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 328.833-2 chr12 7615350 7615701 + 1.33333 NA Intergenic L1MA9|LINE|L1 50383 NM_001644 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 189.333-29 chr5 65273517 65273690 + 1.33333 NA intron (NM_197941, intron 11 of 24) intron (NM_197941, intron 11 of 24) 208317 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 242-15 chr2 112320949 112321300 + 1.33333 NA intron (NM_198581, intron 7 of 11) L1ME4a|LINE|L1 45527 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 273.666-9 chr7 150876571 150876909 + 1.33333 NA Intergenic Intergenic 24223 NM_001272072 26 Hs.647097 NM_001091 ENSG00000002726 AOC1 ABP|ABP1|DAO|DAO1|KAO amine oxidase copper containing 1 protein-coding 316.167-15 chr7 79861957 79862435 + 1.33333 NA Intergenic L1M3|LINE|L1 -272635 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 234.666 chr11 78140594 78140915 + 1.33333 NA intron (NR_102281, intron 1 of 2) MIRb|SINE|MIR 961 NR_102281 100289388 Hs.628183 NM_203432 ENSG00000246174 KCTD21-AS1 - KCTD21 antisense RNA 1 ncRNA 172.167-22 chr5 111997796 111998012 + 1.33333 NA intron (NR_046678, intron 3 of 3) intron (NR_046678, intron 3 of 3) -20972 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 166-32 chr16 46593887 46594143 + 1.33333 NA intron (NR_136738, intron 10 of 13) L1MD1|LINE|L1 -24918 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 382.833-4 chr14 55446007 55446482 + 1.33333 NA Intergenic Intergenic -5699 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 246.666-2 chr11 19742942 19743140 + 1.33333 NA intron (NM_182964, intron 1 of 37) MIRc|SINE|MIR 17042 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 221.167-20 chr4 120714732 120715071 + 1.33333 NA intron (NM_001300824, intron 12 of 13) L1ME3E|LINE|L1 207965 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 357.333 chr1 85884872 85885209 + 1.33333 NA intron (NM_152890, intron 32 of 59) L1MC2|LINE|L1 -176607 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 180.5-20 chr2 148905895 148906340 + 1.33333 NA intron (NM_004522, intron 1 of 25) intron (NM_004522, intron 1 of 25) 30890 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 309-24 chrX 46685858 46686268 + 1.33333 NA intron (NM_001257291, intron 1 of 16) intron (NM_001257291, intron 1 of 16) 73055 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 169.833-27 chr22 36078527 36078776 + 1.33333 NA Intergenic Intergenic -49827 NM_001082578 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 269.333-27 chr9 75857446 75857719 + 1.33333 NA Intergenic MIR|SINE|MIR -33062 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 424-2 chr17 64506387 64506949 + 1.33333 NA promoter-TSS (NR_133644) promoter-TSS (NR_133644) 63 NM_001320596 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 315 chr12 6849239 6849716 + 1.33333 NA intron (NM_001297602, intron 4 of 5) intron (NM_001297602, intron 4 of 5) 2453 NR_138531 83461 Hs.524216 NM_031299 ENSG00000111665 CDCA3 GRCC8|TOME-1 cell division cycle associated 3 protein-coding 305-5 chr11 59696180 59696720 + 1.33333 NA Intergenic L1MB1|LINE|L1 17395 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor family 10 subfamily V member 1 protein-coding 234-13 chr12 60958476 60958977 + 1.33333 NA Intergenic AluY|SINE|Alu 1234113 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 373.333-6 chr11 134207605 134207911 + 1.33333 NA intron (NM_015261, intron 7 of 34) AluSc|SINE|Alu 16774 NM_015261 23310 Hs.438550 NM_015261 ENSG00000151503 NCAPD3 CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex subunit D3 protein-coding 334-8 chr2 225706437 225707052 + 1.33333 NA Intergenic MIR|SINE|MIR 305858 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 172.833-27 chr6 41919197 41919369 + 1.33333 NA intron (NR_131160, intron 1 of 2) MIR|SINE|MIR 1660 NM_001305456 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|SRB2|TRFP mediator complex subunit 20 protein-coding 333.333-8 chr18 53462880 53463218 + 1.33333 NA intron (NM_005215, intron 24 of 28) LTR78B|LTR|ERV1 -105398 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 184.5-29 chr20 50338633 50338952 + 1.33333 NA Intergenic Intergenic -17450 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 287.833-4 chr13 26184844 26185240 + 1.33333 NA intron (NM_183045, intron 5 of 5) AluJb|SINE|Alu 36715 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 281.666-5 chr6 97496946 97497226 + 1.33333 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 191500 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 275.667-27 chr8 67014185 67014406 + 1.33333 NA intron (NM_001348563, intron 1 of 2) intron (NM_001348563, intron 1 of 2) 14256 NM_001348563 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 280.499-3 chr7 100563738 100564041 + 1.33333 NA exon (NM_006076, exon 10 of 12) exon (NM_006076, exon 10 of 12) 10011 NM_001348680 100316904 Hs.633863 NM_001168682 ENSG00000205307 SAP25 - Sin3A associated protein 25 protein-coding 277.5-15 chr4 57373562 57373897 + 1.33333 NA Intergenic MER21C|LTR|ERVL -52143 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 246.666-9 chr9 27289491 27289774 + 1.33333 NA intron (NM_001161585, intron 5 of 6) AluJb|SINE|Alu -6839 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 248.667-21 chr22 26357426 26357757 + 1.33333 NA intron (NM_001184777, intron 12 of 14) L2c|LINE|L2 -71669 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 359.999 chr10 82842511 82842970 + 1.33333 NA intron (NR_163252, intron 3 of 8) AluJo|SINE|Alu -609820 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 209-39 chr8 57581174 57581414 + 1.33333 NA Intergenic Intergenic -164855 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 388-7 chr19 21372509 21373065 + 1.33333 NA intron (NM_001355240, intron 2 of 4) intron (NM_001355240, intron 2 of 4) 13787 NM_001355237 148203 Hs.124384 NM_001355237 ENSG00000172687 ZNF738 - zinc finger protein 738 protein-coding 292.166 chr10 103168938 103169263 + 1.33333 NA intron (NM_001351187, intron 3 of 21) L1MA8|LINE|L1 7957 NM_001351179 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 232.667-20 chr2 148495125 148495471 + 1.33333 NA intron (NM_018328, intron 12 of 14) intron (NM_018328, intron 12 of 14) -149453 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 166.166-2 chr12 121697767 121697950 + 1.33333 NA Intergenic AluSx1|SINE|Alu -14894 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 366.666-6 chrX 154051371 154051819 + 1.33333 NA intron (NM_001369393, intron 1 of 3) intron (NM_001369393, intron 1 of 3) -31606 NR_031757 100313781 NR_031757 ENSG00000284286 MIR718 hsa-mir-718 microRNA 718 ncRNA 203.333-23 chr14 60179091 60179305 + 1.33333 NA Intergenic Intergenic -9334 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 292.666-10 chrX 131826772 131827164 + 1.33333 NA intron (NR_026975, intron 1 of 12) intron (NR_026975, intron 1 of 12) 3675 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 260.666 chr1 42504597 42504869 + 1.33333 NA intron (NM_001355227, intron 6 of 18) PABL_A-int|LTR|ERV1 -28287 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 270.166-5 chr5 61409654 61410029 + 1.33333 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 77583 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 412.333-6 chr7 4613270 4614157 + 1.33333 NA Intergenic LTR16A2|LTR|ERVL -68582 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 193.167-13 chr16 53511451 53511610 + 1.33333 NA Intergenic Intergenic -8226 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 270-25 chr22 34972045 34972395 + 1.33333 NA intron (NR_138042, intron 1 of 4) MIRc|SINE|MIR 25696 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 231.5-31 chr7 15309598 15309915 + 1.33333 NA intron (NM_001004320, intron 12 of 12) MIR3|SINE|MIR 252259 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 292.666-2 chr10 108134412 108134801 + 1.33333 NA Intergenic L1MC3|LINE|L1 -65313 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 188-47 chr6 162744094 162744339 + 1.33333 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 16246 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 189.5-35 chr7 9104985 9105191 + 1.33333 NA Intergenic Intergenic -529182 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 243.333-27 chr3 97895398 97895619 + 1.33333 NA intron (NM_153605, intron 11 of 21) intron (NM_153605, intron 11 of 21) 73497 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 394.999-2 chr16 52678868 52679206 + 1.33333 NA Intergenic Intergenic -72062 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 309.334-8 chr5 4701777 4702519 + 1.33333 NA Intergenic Intergenic -71333 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 212.333-20 chr3 153011311 153011605 + 1.33333 NA Intergenic L1M5|LINE|L1 -150768 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 319.5-12 chr3 54433017 54433410 + 1.33333 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 206644 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 362.5-3 chr1 234884192 234884656 + 1.33333 NA Intergenic L2c|LINE|L2 79575 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 185.333-23 chr2 19286058 19286276 + 1.33333 NA Intergenic Intergenic -62262 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 272.666-5 chr4 80066181 80066478 + 1.33333 NA intron (NM_001286781, intron 3 of 16) MIRc|SINE|MIR 6900 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 481.333-2 chr17 58007369 58008040 + 1.33333 NA promoter-TSS (NR_034041) promoter-TSS (NR_034041) -358 NR_034041 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 388-2 chr11 5398299 5398763 + 1.33333 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) -3866 NM_001348224 79470 NM_001348224 OR51J1 HOR5'Beta8|OR51J1P|OR51J2 olfactory receptor family 51 subfamily J member 1 (gene/pseudogene) protein-coding 169.667-40 chr3 56533864 56534084 + 1.33333 NA Intergenic L1ME3E|LINE|L1 -23182 NR_148374 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 277-13 chr2 6599543 6599797 + 1.33333 NA Intergenic L1M3|LINE|L1 34117 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 448.834 chr13 21603922 21604365 + 1.33333 NA promoter-TSS (NM_152726) promoter-TSS (NM_152726) 27 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 235.999 chr12 111842438 111842659 + 1.33333 NA promoter-TSS (NR_152608) promoter-TSS (NR_152608) 320 NM_003668 8550 Hs.333120 NM_003668 ENSG00000089022 MAPKAPK5 MAPKAP-K5|MK-5|MK5|PRAK MAPK activated protein kinase 5 protein-coding 183.667-30 chr2 128846813 128847055 + 1.33333 NA Intergenic L1ME1|LINE|L1 -17666 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 222.667-4 chr1 225530944 225531218 + 1.33333 NA intron (NM_001008493, intron 3 of 14) intron (NM_001008493, intron 3 of 14) -102226 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 225-17 chr2 169470843 169471163 + 1.33333 NA Intergenic L1MA10|LINE|L1 -8491 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 219-15 chr18 48361954 48362257 + 1.33333 NA intron (NM_001371290, intron 2 of 9) intron (NM_001371290, intron 2 of 9) 13522 NM_001371291 274.833-10 chr3 136729210 136729497 + 1.33333 NA intron (NM_005862, intron 1 of 33) intron (NM_005862, intron 1 of 33) 23025 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 165.333-22 chr14 78902707 78902834 + 1.33333 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -297212 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 244.666-10 chr7 3482364 3482576 + 1.33333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 181218 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 245.167-8 chr19 38636607 38636960 + 1.33333 NA intron (NM_013234, intron 7 of 7).2 intron (NM_013234, intron 7 of 7).2 -10866 NM_001322033 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 232-43 chr9 78068542 78068973 + 1.33333 NA Intergenic Intergenic -36946 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 192.5-3 chr10 15608175 15608401 + 1.33333 NA exon (NM_003638, exon 16 of 30) exon (NM_003638, exon 16 of 30) 111634 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 179-39 chr7 9087840 9088092 + 1.33333 NA Intergenic L1MC|LINE|L1 -546304 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 202-41 chr9 96540768 96541040 + 1.33333 NA intron (NR_147239, intron 6 of 14) intron (NR_147239, intron 6 of 14) 25927 NM_001077181 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 303.833-4 chr17 28728703 28729244 + 1.33333 NA intron (NM_178170, intron 1 of 14) CpG 185 NM_178170 284086 Hs.448468 NM_178170 ENSG00000160602 NEK8 JCK|NEK12A|NPHP9|RHPD2 NIMA related kinase 8 protein-coding 447.833-3 chr2 151828254 151828904 + 1.33333 NA promoter-TSS (NM_177985) promoter-TSS (NM_177985) -158 NM_001037174 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 366-7 chr19 30215034 30215605 + 1.33333 NA Intergenic Intergenic -157065 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 295.666-10 chr2 57796956 57797355 + 1.33333 NA Intergenic Intergenic -110496 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 369.666 chr3 170885944 170886267 + 1.33333 NA Intergenic L1M5|LINE|L1 -15910 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 355.999-2 chr20 8149946 8150329 + 1.33333 NA intron (NM_182734, intron 1 of 32) intron (NM_182734, intron 1 of 32) 17871 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 401.333 chr10 97024005 97024519 + 1.33333 NA intron (NM_003061, intron 25 of 36) intron (NM_003061, intron 25 of 36) -78494 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 295.999-3 chr8 123809786 123810013 + 1.33333 NA intron (NM_144963, intron 22 of 23) intron (NM_144963, intron 22 of 23) 41460 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 170-19 chr15 46934299 46934533 + 1.33333 NA Intergenic Intergenic -249673 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 225.5-10 chr14 72921606 72921827 + 1.33333 NA Intergenic Intergenic -4748 NM_001163509 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 228.333-27 chr6 71533396 71533572 + 1.33333 NA Intergenic Intergenic 112457 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 234.167-25 chr7 91872297 91872829 + 1.33333 NA 3' UTR (NM_006980, exon 3 of 3) 3' UTR (NM_006980, exon 3 of 3) 8139 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 235-25 chr5 16518125 16518450 + 1.33333 NA intron (NM_001034850, intron 3 of 8) (AT)n|Simple_repeat|Simple_repeat -9289 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 304.333-6 chr12 28413285 28413526 + 1.33333 NA intron (NM_001352082, intron 9 of 13) intron (NM_001352082, intron 9 of 13) -222667 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 239.333-40 chr9 107711795 107711988 + 1.33333 NA Intergenic Intergenic -222122 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 238-12 chr14 76421080 76421461 + 1.33333 NA intron (NM_004452, intron 3 of 10) MIR|SINE|MIR 49923 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 272.5-8 chr15 57263448 57263789 + 1.33333 NA intron (NM_001322152, intron 18 of 20) intron (NM_001322152, intron 18 of 20) 15039 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 321-12 chr3 50568903 50569388 + 1.33333 NA promoter-TSS (NM_016173) promoter-TSS (NM_016173) -7 NM_001317851 51409 Hs.517987 NM_016173 ENSG00000114735 HEMK1 HEMK|MTQ1 HemK methyltransferase family member 1 protein-coding 449.833-3 chr16 49350240 49350739 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -23315 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 372.666-3 chr10 43380869 43381272 + 1.33333 NA Intergenic L1MD2|LINE|L1 9426 NM_001184963 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 212.666-2 chr10 91847022 91847338 + 1.33333 NA intron (NM_025235, intron 18 of 26) intron (NM_025235, intron 18 of 26) 48754 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 252.333-6 chr15 40108953 40109152 + 1.33333 NA promoter-TSS (NM_001003943) promoter-TSS (NM_001003943) -173 NM_001003940 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 274-17 chr20 13982301 13982605 + 1.33333 NA intron (NM_001363752, intron 1 of 16) AluJo|SINE|Alu 8161 NM_001271539 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 309.666-5 chr2 107079037 107079487 + 1.33333 NA Intergenic Intergenic -192153 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 330.166-3 chr2 67585289 67585764 + 1.33333 NA Intergenic L1PA15-16|LINE|L1 188193 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 246.167-16 chr2 23392832 23393199 + 1.33333 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 7836 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 185.333-57 chr9 31368655 31368871 + 1.33333 NA Intergenic Intergenic 12727 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 273.001-6 chr5 17126403 17126712 + 1.33333 NA Intergenic Intergenic 29435 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 252.333-19 chrX 87524446 87524741 + 1.33333 NA intron (NM_057162, intron 1 of 10) L1MC3|LINE|L1 6791 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 253.666-4 chr8 102238751 102239046 + 1.33333 NA promoter-TSS (NM_001172478) promoter-TSS (NM_001172478) 63 NM_001172478 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 351.667-18 chr9 77063573 77064134 + 1.33333 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 44198 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 225.333-3 chr1 152026327 152026583 + 1.33333 NA Intergenic L1MB3|LINE|L1 8177 NR_103561 441908 Hs.656557 NR_103561 NBPF18P - NBPF member 18, pseudogene pseudo 277.333-19 chr16 10723861 10724396 + 1.33333 NA Intergenic Intergenic -19658 NM_001278506 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 254.333-20 chr19 11758890 11759316 + 1.33333 NA Intergenic AluSx|SINE|Alu -7897 NM_152355 126068 Hs.675132 NM_152355 ENSG00000197044 ZNF441 - zinc finger protein 441 protein-coding 165.833-29 chr3 164474618 164474940 + 1.33333 NA Intergenic L1MC1|LINE|L1 -303223 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 207.333-39 chr5 99771289 99771551 + 1.33333 NA Intergenic Intergenic 237430 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 348.666-7 chr18 3681189 3681471 + 1.33333 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 77593 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 294.666-4 chr22 30390882 30391291 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL -3675 NM_001017981 200312 Hs.592194 NM_001017981 ENSG00000099999 RNF215 - ring finger protein 215 protein-coding 270.167-10 chr2 15545045 15545530 + 1.33333 NA intron (NR_052013, intron 6 of 50) L1MEf|LINE|L1 16047 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 340.666-5 chr6 20886508 20886835 + 1.33333 NA intron (NM_017774, intron 9 of 15) L1MB4|LINE|L1 352214 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 229.333-29 chr5 5057379 5057665 + 1.33333 NA intron (NR_026994, intron 2 of 6) intron (NR_026994, intron 2 of 6) 20789 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 252.166 chr3 171729724 171730130 + 1.33333 NA intron (NM_002662, intron 6 of 26) MIRc|SINE|MIR 80556 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 205.5-20 chr22 19293126 19293604 + 1.33333 NA Intergenic Intergenic -1646 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 256.167-14 chr3 159083500 159083711 + 1.33333 NA intron (NM_001197113, intron 1 of 10) L1MD2|LINE|L1 14286 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 370.166-2 chr6 112013823 112014499 + 1.33333 NA Intergenic FLAM_A|SINE|Alu -39914 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 342-15 chr8 90997569 90997926 + 1.33333 NA intron (NM_018710, intron 5 of 6) L2b|LINE|L2 -12509 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 249-10 chr14 62978683 62978988 + 1.33333 NA intron (NM_139318, intron 6 of 10) L1MA8|LINE|L1 66623 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 260.333-20 chr6 49430520 49430835 + 1.33333 NA 3' UTR (NM_000255, exon 13 of 13) 3' UTR (NM_000255, exon 13 of 13) 32576 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 322.666-2 chr10 60384448 60384810 + 1.33333 NA intron (NM_001204403, intron 2 of 43) MIR|SINE|MIR 5246 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 181.333-30 chr4 37297896 37298165 + 1.33333 NA intron (NM_001144990, intron 1 of 6) MER90|LTR|ERV1 53287 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 368.5 chr1 71093690 71094149 + 1.33333 NA intron (NR_046217, intron 2 of 3) intron (NR_046217, intron 2 of 3) 12595 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 261.499-2 chr9 108905557 108905803 + 1.33333 NA intron (NM_001330749, intron 12 of 34) Tigger3c|DNA|TcMar-Tigger 28444 NM_001330749 8518 Hs.494738 NM_003640 ENSG00000070061 ELP1 DYS|FD|IKAP|IKBKAP|IKI3|TOT1 elongator complex protein 1 protein-coding 340-11 chr3 29406675 29407249 + 1.33333 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 125650 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 234.5-26 chr21 30644226 30644556 + 1.33333 NA Intergenic L1PB1|LINE|L1 1527 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 346.833-5 chr3 24679323 24679830 + 1.33333 NA Intergenic MIRb|SINE|MIR -149747 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 228.667-6 chr12 4037860 4038163 + 1.33333 NA Intergenic Intergenic -164563 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 181.5-16 chr14 48686880 48687191 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -892021 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 224.833-4 chr10 81434064 81434490 + 1.33333 NA Intergenic L1MD2|LINE|L1 -440917 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 485.667-4 chr17 18183364 18184224 + 1.33333 NA promoter-TSS (NM_017758) promoter-TSS (NM_017758) -34 NM_017758 54890 Hs.744130 NM_017758 ENSG00000091542 ALKBH5 ABH5|OFOXD|OFOXD1 alkB homolog 5, RNA demethylase protein-coding 213.667-23 chr2 52381045 52381467 + 1.33333 NA intron (NR_135239, intron 2 of 2) L1PA17|LINE|L1 10608 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 168.333-68 chrX 104142388 104142534 + 1.33333 NA intron (NM_001012755, intron 1 of 1) intron (NM_001012755, intron 1 of 1) 14548 NM_001012755 401612 Hs.660022 NM_001012755 ENSG00000269743 SLC25A53 MCART6 solute carrier family 25 member 53 protein-coding 280.334-5 chr6 74535114 74535432 + 1.33333 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 465822 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 200.333-14 chr14 39409248 39409512 + 1.33333 NA intron (NM_203301, intron 1 of 3) L1MB1|LINE|L1 23120 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 349-14 chr5 5949541 5949826 + 1.33333 NA Intergenic L1MB8|LINE|L1 387609 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 329-2 chr14 74562765 74563443 + 1.33333 NA intron (NM_000428, intron 3 of 35) LTR16A1|LTR|ERVL 49133 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 241.333-25 chr4 64234551 64234874 + 1.33333 NA Intergenic Intergenic 174738 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 249 chr1 176555060 176555454 + 1.33333 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 92082 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 221.333-30 chr8 5938492 5938731 + 1.33333 NA Intergenic Intergenic 467937 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 224-34 chr4 28071731 28071965 + 1.33333 NA Intergenic L1PB4|LINE|L1 -747734 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 191.666-3 chr1 229452900 229453071 + 1.33333 NA intron (NM_018230, intron 21 of 25) intron (NM_018230, intron 21 of 25) -18889 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 268.166-3 chrX 63687344 63687564 + 1.33333 NA intron (NM_001353922, intron 4 of 8) L1MA4|LINE|L1 -15952 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 323-19 chr3 112938971 112939367 + 1.33333 NA intron (NM_138940, intron 1 of 2) L1MA5A|LINE|L1 35934 NM_138806 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 192-19 chr19 35555827 35556052 + 1.33333 NA intron (NM_000704, intron 12 of 21) L2a|LINE|L2 7719 NM_000704 495 Hs.36992 NM_000704 ENSG00000105675 ATP4A ATP6A ATPase H+/K+ transporting subunit alpha protein-coding 254.667-33 chr8 124953728 124954099 + 1.33333 NA Intergenic MamRTE1|LINE|RTE-BovB 11905 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 326.666-2 chr12 18996549 18996951 + 1.33333 NA Intergenic Intergenic -132983 NM_001143821 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 414.999 chr18 2889870 2890326 + 1.33333 NA intron (NM_032048, intron 3 of 7) intron (NM_032048, intron 3 of 7) 43092 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 194.833-16 chr17 31273657 31273819 + 1.33333 NA intron (NM_001042492, intron 36 of 57) intron (NM_001042492, intron 36 of 57) 23501 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 274.999-3 chr4 30697113 30697545 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR -23040 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 309.833-7 chr8 125845645 125846037 + 1.33333 NA Intergenic Tigger3|DNA|TcMar-Tigger 105356 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 287.333 chr1 27299432 27299959 + 1.33333 NA intron (NM_001276252, intron 12 of 15) L2c|LINE|L2 -22450 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 237.333-24 chr2 237923216 237923443 + 1.33333 NA Intergenic Intergenic -43616 NM_080678 140739 Hs.471785 NM_080678 ENSG00000184182 UBE2F NCE2 ubiquitin conjugating enzyme E2 F (putative) protein-coding 334.666-3 chr10 102352078 102352512 + 1.33333 NA intron (NM_001199378, intron 6 of 39) intron (NM_001199378, intron 6 of 39) -41815 NM_001288724 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 305-8 chr13 77357406 77357863 + 1.33333 NA Intergenic Intergenic -30540 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 397.333-4 chr4 142850589 142851256 + 1.33333 NA Intergenic MLT1B|LTR|ERVL-MaLR -4387 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 188.833-2 chr1 121505071 121505265 + 1.33333 NA Intergenic L1PA14|LINE|L1 -13944 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 358.5-11 chr3 179562611 179563168 + 1.33333 NA promoter-TSS (NM_178042) promoter-TSS (NM_178042) 9 NM_177989 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 304.666-3 chr7 140168723 140169018 + 1.33333 NA intron (NM_030647, intron 1 of 19) L1MC4a|LINE|L1 8113 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 273.166-3 chr3 4303307 4303631 + 1.33333 NA exon (NM_006515, exon 1 of 3) exon (NM_006515, exon 1 of 3) 165 NM_006515 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 296.166-3 chr2 34569264 34569622 + 1.33333 NA Intergenic Intergenic -108114 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 336.667-10 chr4 95759227 95759653 + 1.33333 NA Intergenic Intergenic -80653 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 354-9 chr18 59918390 59918926 + 1.33333 NA Intergenic Intergenic 18662 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 414.333 chr15 98861526 98861924 + 1.33333 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 77299 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 265.666-7 chr3 160399216 160399487 + 1.33333 NA promoter-TSS (NM_001190241) promoter-TSS (NM_001190241) -126 NM_020800 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 300.5-12 chr19 29239937 29240488 + 1.33333 NA Intergenic Intergenic -27061 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 242-18 chr2 162587943 162588294 + 1.33333 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -180818 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 211-7 chr11 70055520 70055704 + 1.33333 NA TTS (NR_120530) TTS (NR_120530) 8312 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 185.333-35 chr4 35519326 35519626 + 1.33333 NA Intergenic Intergenic 724463 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 299.5-9 chr17 48817091 48817556 + 1.33333 NA promoter-TSS (NM_001366314) promoter-TSS (NM_001366314) -94 NM_001130918 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 261-13 chr20 47853457 47853925 + 1.33333 NA Intergenic Intergenic -67075 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 211.5-33 chr3 148947487 148947722 + 1.33333 NA Intergenic Intergenic -43804 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 391.334 chr1 203701755 203702672 + 1.33333 NA intron (NM_001001396, intron 7 of 21) intron (NM_001001396, intron 7 of 21) -27368 NR_003019 677843 Hs.676135 NR_003019 ENSG00000221643 SNORA77 ACA63|SNORA77A small nucleolar RNA, H/ACA box 77 snoRNA 424-11 chr8 119872040 119872780 + 1.33333 NA Intergenic MIR|SINE|MIR -1245 NM_001283012 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 330.833 chr1 24564736 24565102 + 1.33333 NA intron (NM_001010980, intron 1 of 3) L1MEh|LINE|L1 8832 NM_001010980 400746 Hs.200253 NM_001010980 ENSG00000184454 NCMAP C1orf130|MP11 non-compact myelin associated protein protein-coding 262.833-6 chr14 96085861 96086184 + 1.33333 NA intron (NM_001282463, intron 2 of 2) L1ME4a|LINE|L1 46660 NM_001289139 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 267.333-22 chr6 135019651 135019910 + 1.33333 NA intron (NM_001363686, intron 4 of 18) intron (NM_001363686, intron 4 of 18) 35042 NM_001145158 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 279.5-7 chr17 45171139 45171481 + 1.33333 NA non-coding (NR_135646, exon 1 of 2) non-coding (NR_135646, exon 1 of 2) 175 NR_135646 105371795 Hs.569733 NR_135646 ENSG00000267288 LOC105371795 - uncharacterized LOC105371795 ncRNA 182.5-38 chr7 19918918 19919424 + 1.33333 NA non-coding (NR_110114, exon 6 of 6) non-coding (NR_110114, exon 6 of 6) -145554 NM_001366626 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 264.666-10 chr4 155999215 155999497 + 1.33333 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat -45490 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 520.834-2 chr9 34646334 34647049 + 1.33333 NA promoter-TSS (NM_000155) promoter-TSS (NM_000155) 16 NM_000155 2592 Hs.522090 NM_000155 ENSG00000213930 GALT - galactose-1-phosphate uridylyltransferase protein-coding 461.499-2 chr8 67821807 67822405 + 1.33333 NA Intergenic MER92D|LTR|ERV1 -75746 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 180.333-27 chr2 103498001 103498319 + 1.33333 NA Intergenic Intergenic -513731 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 229-19 chr3 55160588 55160804 + 1.33333 NA Intergenic Intergenic -17476 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 327.666-5 chr4 87974411 87974728 + 1.33333 NA Intergenic Intergenic -1081 NM_001251830 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 354.999 chr20 46365822 46366195 + 1.33333 NA TTS (NM_001318253) TTS (NM_001318253) -1550 NM_001281458 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding 241.166 chr13 85801524 85801771 + 1.33333 NA Intergenic Intergenic -2228 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 301.333-23 chr9 108272289 108272738 + 1.33333 NA Intergenic Intergenic 583473 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 209.166-3 chr14 79308533 79308741 + 1.33333 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 29257 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 260-26 chr7 109841656 109842023 + 1.33333 NA Intergenic Intergenic 118374 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 365.666-7 chr7 67483829 67484442 + 1.33333 NA Intergenic Intergenic 148159 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 439.833-2 chr20 54597430 54598100 + 1.33333 NA intron (NM_018431, intron 5 of 7) intron (NM_018431, intron 5 of 7) 122172 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 200.333-30 chr5 43031531 43031740 + 1.33333 NA intron (NR_104651, intron 2 of 2) AluSx1|SINE|Alu 8710 NM_001014279 389289 Hs.529385 NM_001014279 ENSG00000177721 ANXA2R AX2R|AXIIR|C5orf39 annexin A2 receptor protein-coding 220 chr1 31712788 31713109 + 1.33333 NA Intergenic MIR|SINE|MIR -8931 NM_001856 1307 Hs.368921 NM_001856 ENSG00000084636 COL16A1 447AA|FP1572 collagen type XVI alpha 1 chain protein-coding 262.833-7 chr16 25055557 25055835 + 1.33333 NA Intergenic L3|LINE|CR1 -11191 NR_135197 283887 Hs.652665 NR_135196 ENSG00000262155 LINC02175 - long intergenic non-protein coding RNA 2175 ncRNA 254.333-26 chr20 59403921 59404138 + 1.33333 NA Intergenic Intergenic 103418 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 204-9 chr11 54870499 54870783 + 1.33333 NA Intergenic ALR/Alpha|Satellite|centr 163809 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 171.333 chr1 28134243 28134485 + 1.33333 NA Intergenic Intergenic 42326 NM_001164723 5724 Hs.77542 NM_000952 ENSG00000169403 PTAFR PAFR platelet activating factor receptor protein-coding 263.166-2 chr2 165401197 165401497 + 1.33333 NA Intergenic L1MB5|LINE|L1 -68351 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 313.833-7 chr6 80681470 80681889 + 1.33333 NA Intergenic Kanga11a|DNA|TcMar-Tc2 575008 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 365.333-8 chr22 43624839 43625247 + 1.33333 NA intron (NM_198856, intron 18 of 29) intron (NM_198856, intron 18 of 29) 108789 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 497.333-4 chr3 184371485 184371974 + 1.33333 NA TTS (NM_001290022) TTS (NM_001290022) 6478 NM_000460 7066 Hs.1166 NM_000460 ENSG00000090534 THPO MGDF|MKCSF|ML|MPLLG|THCYT1|TPO thrombopoietin protein-coding 253.333-35 chr7 23644064 23644393 + 1.33333 NA 3' UTR (NM_138771, exon 4 of 4) 3' UTR (NM_138771, exon 4 of 4) -35971 NM_001300932 340277 Hs.592178 NM_199136 ENSG00000188732 FAM221A C7orf46 family with sequence similarity 221 member A protein-coding 215-29 chr3 133283649 133283867 + 1.33333 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -26637 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 382.667-7 chr2 197229781 197230433 + 1.33333 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) 32116 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 300-7 chr14 70815017 70815458 + 1.33333 NA Intergenic Intergenic -5724 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 267-23 chr2 177143087 177143368 + 1.33333 NA Intergenic Intergenic 69184 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 197-21 chr3 26984936 26985188 + 1.33333 NA Intergenic Intergenic 231461 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 299.833-2 chr1 95348031 95348334 + 1.33333 NA Intergenic Intergenic 3925 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 388.167 chr14 61178725 61179497 + 1.33333 NA Intergenic Intergenic 102227 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 231.333-20 chr16 9917989 9918197 + 1.33333 NA intron (NM_001134408, intron 3 of 13) MIRb|SINE|MIR 263974 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 245.5-15 chr20 21322547 21322780 + 1.33333 NA intron (NM_001317960, intron 1 of 29) intron (NM_001317960, intron 1 of 29) 19165 NM_001317960 22803 Hs.255932 NM_012255 ENSG00000088930 XRN2 - 5'-3' exoribonuclease 2 protein-coding 317.666-3 chr14 53430823 53431086 + 1.33333 NA Intergenic Intergenic 277600 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 184.167-11 chr14 82688752 82689199 + 1.33333 NA intron (NR_146650, intron 4 of 5) intron (NR_146650, intron 4 of 5) 46343 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 271-9 chr14 86378881 86379306 + 1.33333 NA Intergenic L1PA16|LINE|L1 444415 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 235.001 chr10 71731500 71732062 + 1.33333 NA intron (NM_022124, intron 30 of 67) intron (NM_022124, intron 30 of 67) 6069 NM_001168390 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 216.333-16 chr13 60626975 60627301 + 1.33333 NA Intergenic Intergenic -45817 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 830.5-2 chr19 45606745 45608022 + 1.33333 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -5171 NM_005282 2828 Hs.17170 NM_005282 ENSG00000177464 GPR4 - G protein-coupled receptor 4 protein-coding 254.666-2 chr11 78961285 78961773 + 1.33333 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -386665 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 439.166 chr12 15960702 15961280 + 1.33333 NA intron (NM_015954, intron 4 of 8) L2c|LINE|L2 49659 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 205.667-8 chr11 95159166 95159471 + 1.33333 NA TTS (NR_110303) TTS (NR_110303) 8779 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 199-22 chr2 54033974 54034186 + 1.33333 NA intron (NM_001320587, intron 2 of 5) U7|snRNA|snRNA 62967 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 306 chr10 12947650 12948009 + 1.33333 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 53884 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 182.166 chr4 17859352 17859674 + 1.33333 NA intron (NM_001365665, intron 4 of 4) L1MEc|LINE|L1 48534 NM_022346 64151 Hs.567567 NM_022346 ENSG00000109805 NCAPG CAPG|CHCG|NY-MEL-3|YCG1 non-SMC condensin I complex subunit G protein-coding 199.333-26 chr19 17508858 17509007 + 1.33333 NA intron (NR_147835, intron 1 of 2) intron (NR_147835, intron 1 of 2) -2717 NM_012088 25796 Hs.466165 NM_012088 ENSG00000130313 PGLS 6PGL|HEL-S-304 6-phosphogluconolactonase protein-coding 168-47 chr6 168334217 168334441 + 1.33333 NA Intergenic Intergenic -14552 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 432 chr12 51113991 51114384 + 1.33333 NA intron (NM_005653, intron 4 of 14) L1MB3|LINE|L1 -30591 NR_045072 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 194.666 chr10 52561525 52561735 + 1.33333 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -91097 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 267-2 chr10 58444226 58444474 + 1.33333 NA Intergenic L2c|LINE|L2 58940 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 179.333-29 chr2 229981748 229982015 + 1.33333 NA intron (NM_174899, intron 2 of 3) MSTA|LTR|ERVL-MaLR -58701 NM_001348335 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 288.666-7 chr2 219295459 219295776 + 1.33333 NA intron (NM_001199764, intron 18 of 22) intron (NM_001199764, intron 18 of 22) -1417 NR_029688 406944 NR_029688 ENSG00000207647 MIR153-1 MIRN153-1|mir-153-1 microRNA 153-1 ncRNA 192.333-50 chr7 87624550 87624853 + 1.33333 NA intron (NM_001348945, intron 2 of 31) intron (NM_001348945, intron 2 of 31) -3697 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 207.333-36 chr5 3939246 3939642 + 1.33333 NA Intergenic L1MC1|LINE|L1 343612 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 302.5-8 chr11 117809066 117809751 + 1.33333 NA intron (NM_001367905, intron 1 of 6) intron (NM_001367905, intron 1 of 6) 8106 NM_001367905 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 408-3 chr16 18852760 18853233 + 1.33333 NA intron (NM_015092, intron 31 of 62) intron (NM_015092, intron 31 of 62) -51447 NM_015161 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 219.333-34 chr5 173332232 173332407 + 1.33333 NA Intergenic Intergenic -2816 NM_003714 8614 Hs.233160 NM_003714 ENSG00000113739 STC2 STC-2|STCRP stanniocalcin 2 protein-coding 259.499 chr6 135908805 135909090 + 1.33333 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 57246 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 288.333-16 chr5 153855244 153855644 + 1.33333 NA Intergenic L1MA6|LINE|L1 43543 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 333-5 chr14 77041983 77042505 + 1.33333 NA intron (NR_110554, intron 1 of 3) intron (NR_110554, intron 1 of 3) 1195 NR_110554 283575 Hs.651736 NR_110554 ENSG00000246548 LINC02288 - long intergenic non-protein coding RNA 2288 ncRNA 174.166-3 chr6 52033249 52033421 + 1.33333 NA intron (NM_138694, intron 28 of 66) intron (NM_138694, intron 28 of 66) 54278 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 179.166 chr11 20449886 20450096 + 1.33333 NA intron (NM_005788, intron 10 of 15) L2a|LINE|L2 62275 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 169-16 chr14 83773907 83774081 + 1.33333 NA Intergenic Intergenic 1131362 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 268.499 chr11 113114402 113114673 + 1.33333 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -151077 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 271-3 chr10 53944759 53945083 + 1.33333 NA intron (NM_001354411, intron 24 of 34) intron (NM_001354411, intron 24 of 34) -541309 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 312.333-12 chr15 40859083 40859507 + 1.33333 NA Intergenic Intergenic -14771 NR_146468 102724362 Hs.569458 NR_146466 ENSG00000261183 SPINT1-AS1 - SPINT1 antisense RNA 1 ncRNA 311.333-23 chr7 143217178 143217490 + 1.33333 NA intron (NM_001130026, intron 8 of 10) Charlie8|DNA|hAT-Charlie -4703 NM_176882 259286 Hs.352241 NM_176882 ENSG00000221937 TAS2R40 GPR60|T2R40|T2R58 taste 2 receptor member 40 protein-coding 389.5-8 chr7 38467692 38468335 + 1.33333 NA intron (NM_001635, intron 7 of 20) L1M5|LINE|L1 126436 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 294.666-5 chr5 149390901 149391138 + 1.33333 NA intron (NM_001317987, intron 1 of 2) AluSx1|SINE|Alu -11727 NM_014443 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 215-42 chr8 136998281 136998466 + 1.33333 NA Intergenic L1MD2|LINE|L1 415215 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 381.833-5 chr18 6560839 6561533 + 1.33333 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 49770 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 295.666-8 chr18 11526830 11527081 + 1.33333 NA Intergenic Intergenic 36907 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 251.167-11 chr19 38867638 38868226 + 1.33333 NA TTS (NM_198445) TTS (NM_198445) 10343 NM_001195833 126432 Hs.446933 NM_198445 ENSG00000187994 RINL - Ras and Rab interactor like protein-coding 353.667-8 chr20 6636195 6636722 + 1.33333 NA Intergenic Intergenic 99678 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 332.499 chr14 87031260 87031557 + 1.33333 NA Intergenic Intergenic 125630 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 198-23 chr2 150218974 150219128 + 1.33333 NA Intergenic MIR3|SINE|MIR 37956 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 263.833-3 chr11 66678444 66678970 + 1.33333 NA promoter-TSS (NM_031492) promoter-TSS (NM_031492) -820 NM_031492 83759 Hs.618713 NM_031492 ENSG00000173914 RBM4B RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B RNA binding motif protein 4B protein-coding 232-2 chr1 96445774 96446061 + 1.33333 NA Intergenic Intergenic -71792 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 342.5-2 chr11 101748552 101748934 + 1.33333 NA Intergenic Intergenic -164736 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 241.333-15 chr2 11189906 11190241 + 1.33333 NA intron (NM_001321643, intron 32 of 32) intron (NM_001321643, intron 32 of 32) 34606 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 267.666-4 chr21 34332978 34333218 + 1.33333 NA Intergenic Intergenic -30926 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 351-18 chr8 139434242 139434554 + 1.33333 NA Intergenic Intergenic 268725 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 215-28 chr3 73048772 73049048 + 1.33333 NA intron (NM_001318026, intron 3 of 8) intron (NM_001318026, intron 3 of 8) -12749 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 256.5-26 chrM 4673 5087 + 1.33333 NA Intergenic Intergenic 2634 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 243.166-8 chr7 88155846 88156100 + 1.33333 NA exon (NM_021722, exon 22 of 31) exon (NM_021722, exon 22 of 31) -60687 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 238.167-27 chr7 113045613 113046002 + 1.33333 NA Intergenic LTR16A|LTR|ERVL 40531 NM_001146266 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 290.666-2 chr12 61293271 61293685 + 1.33333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 899361 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 257.666 chr11 21814410 21814667 + 1.33333 NA Intergenic Intergenic -378547 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 234.5-5 chr1 145858971 145859452 + 1.33333 NA promoter-TSS (NM_006099) promoter-TSS (NM_006099) -130 NM_006099 10401 Hs.435761 NM_006099 ENSG00000131788 PIAS3 ZMIZ5 protein inhibitor of activated STAT 3 protein-coding 175-6 chr1 202574130 202574371 + 1.33333 NA intron (NM_002481, intron 23 of 23) AluJb|SINE|Alu 34136 NM_001197131 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 203.5-17 chr16 75491802 75492115 + 1.33333 NA intron (NR_163480, intron 1 of 3) intron (NR_163480, intron 1 of 3) 3483 NR_163481 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST carbohydrate sulfotransferase 6 protein-coding 258.666-4 chr13 66122667 66122992 + 1.33333 NA Intergenic L1PB4|LINE|L1 -95421 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 515.5-2 chr2 71000881 71002055 + 1.33333 NA Intergenic Intergenic -6595 NM_144582 113419 Hs.516087 NM_144582 ENSG00000144043 TEX261 TEG-261 testis expressed 261 protein-coding 262.499-2 chr16 24863834 24864030 + 1.33333 NA intron (NM_001258412, intron 4 of 14) L1M4|LINE|L1 17701 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 member 11 protein-coding 178.333-39 chr7 131105000 131105243 + 1.33333 NA intron (NR_109850, intron 2 of 5) intron (NR_109850, intron 2 of 5) 1909 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 242-26 chr5 157287473 157287728 + 1.33333 NA intron (NM_001291721, intron 3 of 29) intron (NM_001291721, intron 3 of 29) 18276 NM_014376 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 232.333-7 chr12 104109155 104109485 + 1.33333 NA Intergenic Intergenic 28890 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 262.833-17 chr8 85977484 85977901 + 1.33333 NA Intergenic HAL1|LINE|L1 91976 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 200.833-5 chr1 201435599 201436098 + 1.33333 NA Intergenic Intergenic -14118 NM_003281 7135 Hs.320890 NM_003281 ENSG00000159173 TNNI1 SSTNI|TNN1 troponin I1, slow skeletal type protein-coding 163.167-10 chr12 84121164 84121405 + 1.33333 NA Intergenic Intergenic 791515 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 276.167-5 chr12 26031668 26032061 + 1.33333 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -20700 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 304.334-2 chr10 60489517 60490104 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 83146 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 169.833-14 chr14 50645920 50646060 + 1.33333 NA intron (NM_021818, intron 2 of 4) L1MD|LINE|L1 22316 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 214-5 chr10 102310346 102310551 + 1.33333 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 64916 NM_001199378 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 362.666 chr14 56280752 56281089 + 1.33333 NA intron (NM_021255, intron 3 of 5) L1ME4c|LINE|L1 162509 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 375.834-6 chr8 144103779 144104245 + 1.33333 NA promoter-TSS (NM_030974) promoter-TSS (NM_030974) -239 NR_038270 81858 Hs.529755 NM_030974 ENSG00000179526 SHARPIN SIPL1 SHANK associated RH domain interactor protein-coding 338-10 chr5 11199542 11199929 + 1.33333 NA intron (NM_001288715, intron 9 of 20) intron (NM_001288715, intron 9 of 20) 389182 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 279-27 chr4 153493588 153493939 + 1.33333 NA intron (NM_001131007, intron 3 of 34) MIR|SINE|MIR 27403 NM_001131007 23240 Hs.732450 NM_015196 ENSG00000121210 TMEM131L KIAA0922 transmembrane 131 like protein-coding 359.333 chr1 100355080 100355400 + 1.33333 NA intron (NM_001319212, intron 2 of 13) intron (NM_001319212, intron 2 of 13) 2734 NM_001319210 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 267-13 chr14 55802762 55803223 + 1.33333 NA Intergenic MER117|DNA|hAT-Charlie -6318 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 227-15 chr2 35504218 35504539 + 1.33333 NA Intergenic MLT1C|LTR|ERVL-MaLR 32973 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 243.667-13 chr14 65020085 65020385 + 1.33333 NA intron (NM_002028, intron 4 of 11) intron (NM_002028, intron 4 of 11) -24453 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 270.166-4 chr3 118478677 118479088 + 1.33333 NA Intergenic MER41B|LTR|ERV1 -162886 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 271.166-2 chr17 64284688 64285013 + 1.33333 NA Intergenic Intergenic -21590 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 244.667-11 chr15 72487092 72487430 + 1.33333 NA intron (NM_005744, intron 1 of 13) intron (NM_005744, intron 1 of 13) 12931 NM_005744 25820 Hs.268787 NM_005744 ENSG00000166233 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 345.5-20 chr7 116801359 116801706 + 1.33333 NA Intergenic Intergenic -61055 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 263.333-23 chr7 12084294 12084568 + 1.33333 NA Intergenic Intergenic -126863 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 250.5 chr1 162633006 162633256 + 1.33333 NA intron (NM_006182, intron 1 of 17) intron (NM_006182, intron 1 of 17) 667 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 167.666-2 chr10 63031387 63031571 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -101768 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 423.999 chr3 136595214 136595748 + 1.33333 NA intron (NM_005862, intron 4 of 33) AluY|SINE|Alu 156897 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 175.833 chr1 35686754 35687059 + 1.33333 NA Intergenic Intergenic 30005 NM_001348691 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 329.167-11 chr3 180679973 180680588 + 1.33333 NA promoter-TSS (NM_181426) promoter-TSS (NM_181426) -791 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 263.999 chr14 51993200 51993402 + 1.33333 NA intron (NM_016039, intron 2 of 7) intron (NM_016039, intron 2 of 7) 3755 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 267.833-10 chr6 16763214 16763631 + 1.33333 NA non-coding (NR_136240, exon 3 of 3) non-coding (NR_136240, exon 3 of 3) -1932 NM_001128164 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 190-38 chr3 180782269 180782520 + 1.33333 NA intron (NR_109986, intron 3 of 13) intron (NR_109986, intron 3 of 13) 87784 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 308.166-3 chr12 45273853 45274169 + 1.33333 NA intron (NM_001204803, intron 2 of 20) L2a|LINE|L2 -18679 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 230.667-31 chr9 36479414 36479729 + 1.33333 NA Intergenic Intergenic -78373 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 186.5-28 chr6 57242399 57242578 + 1.33333 NA Intergenic Intergenic -20174 NM_001278666 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 303.666-3 chr19 47600400 47600836 + 1.33333 NA Intergenic CpG -7578 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 BICRA GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein protein-coding 200.333 chr1 30676554 30676862 + 1.33333 NA Intergenic L1ME4b|LINE|L1 -42064 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 292.666 chr1 42533754 42534075 + 1.33333 NA 5' UTR (NM_001080850, exon 1 of 17) 5' UTR (NM_001080850, exon 1 of 17) 894 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 167.333-40 chr4 56436082 56436439 + 1.33333 NA promoter-TSS (NM_001079524) promoter-TSS (NM_001079524) 0 NM_001079524 10606 Hs.518774 NM_006452 ENSG00000128050 PAICS ADE2|ADE2H1|AIRC|PAIS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase protein-coding 321-14 chr3 129832699 129833082 + 1.33333 NA intron (NM_001128224, intron 1 of 5) L1ME4a|LINE|L1 -38278 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 417.333-2 chr11 16046469 16046938 + 1.33333 NA intron (NM_033326, intron 11 of 15) intron (NM_033326, intron 11 of 15) -77082 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 203.5-28 chr3 98439477 98439843 + 1.33333 NA Intergenic L1MC4|LINE|L1 -29820 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 206.666 chr10 107169462 107169626 + 1.33333 NA Intergenic Intergenic -4838 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 231.333-29 chr6 37426014 37426490 + 1.33333 NA Intergenic L1M4c|LINE|L1 -6969 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 336.999-2 chr5 68333716 68334054 + 1.33333 NA Intergenic Intergenic 41308 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 381.333-4 chr2 146871414 146871718 + 1.33333 NA Intergenic AluSq2|SINE|Alu 284509 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 262.166-2 chr1 211423117 211423334 + 1.33333 NA intron (NR_026761, intron 4 of 5) Tigger4|DNA|TcMar-Tigger 40470 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 317.166-4 chr19 49085206 49085897 + 1.33333 NA promoter-TSS (NM_003089) promoter-TSS (NM_003089) 100 NM_003089 6625 Hs.467097 NM_003089 ENSG00000104852 SNRNP70 RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP small nuclear ribonucleoprotein U1 subunit 70 protein-coding 206.5 chr1 5621186 5621460 + 1.33333 NA Intergenic Intergenic 241418 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 203.166-4 chr7 1608872 1609306 + 1.33333 NA Intergenic Intergenic -5381 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 299.834-13 chr8 80067702 80068182 + 1.33333 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) 12888 NM_001287143 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 319.166 chr11 46025310 46025709 + 1.33333 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 95310 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 241.833 chr10 69408626 69409019 + 1.33333 NA intron (NM_001057, intron 3 of 4) CpG 8096 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 244.999 chr9 70602703 70602888 + 1.33333 NA intron (NM_001366143, intron 19 of 25) intron (NM_001366143, intron 19 of 25) -188138 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 278-20 chr3 44470635 44470960 + 1.33333 NA intron (NM_181489, intron 1 of 7) intron (NM_181489, intron 1 of 7) 6873 NM_001369454 353274 Hs.250481 NM_181489 ENSG00000185219 ZNF445 ZKSCAN15|ZNF168|ZSCAN47 zinc finger protein 445 protein-coding 312.666-3 chr14 76192269 76192540 + 1.33333 NA intron (NM_001322028, intron 8 of 9) intron (NM_001322028, intron 8 of 9) 38050 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 325.833-7 chr7 49398955 49399449 + 1.33333 NA Intergenic Intergenic -374436 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 319.333-8 chr18 65148657 65148938 + 1.33333 NA Intergenic HSMAR2|DNA|TcMar-Mariner -601455 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 272-22 chr3 73058401 73058836 + 1.33333 NA intron (NM_001318026, intron 3 of 8) L1MA3|LINE|L1 -3041 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 271-13 chr2 81417043 81417575 + 1.33333 NA Intergenic LTR48|LTR|ERV1 49637 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 450.666-7 chr3 112074846 112075459 + 1.33333 NA intron (NR_026734, intron 13 of 16) intron (NR_026734, intron 13 of 16) -11183 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 283-14 chr6 38828191 38828532 + 1.33333 NA intron (NM_001371, intron 29 of 91) intron (NM_001371, intron 29 of 91) 113050 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 231.333-18 chr12 103647347 103647569 + 1.33333 NA intron (NM_017564, intron 9 of 68) intron (NM_017564, intron 9 of 68) 60185 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 387.166-4 chr9 27059444 27060128 + 1.33333 NA intron (NM_025103, intron 18 of 19) intron (NM_025103, intron 18 of 19) -49355 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 258.667-3 chr10 70054772 70055123 + 1.33333 NA intron (NM_018649, intron 1 of 8) intron (NM_018649, intron 1 of 8) 2101 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 278.333-26 chr9 104183656 104184143 + 1.33333 NA Intergenic Intergenic -86330 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 274-18 chr20 22428393 22428666 + 1.33333 NA Intergenic Intergenic -7886 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 167.166-2 chr12 59819959 59820144 + 1.33333 NA Intergenic Intergenic 130681 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 500.166-2 chr3 150495524 150496039 + 1.33333 NA Intergenic Intergenic 50715 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 298.333-18 chr8 108482917 108483238 + 1.33333 NA intron (NR_138033, intron 9 of 9) MIR|SINE|MIR 39453 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 202.333-36 chr8 136877417 136877621 + 1.33333 NA intron (NR_147196, intron 4 of 5) Tigger4|DNA|TcMar-Tigger 346721 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 351.5-3 chr11 38977292 38977833 + 1.33333 NA Intergenic L1MD2|LINE|L1 328704 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 592 chr1 207084453 207085328 + 1.33333 NA Intergenic Intergenic -3970 NM_001017365 725 Hs.99886 NM_000716 ENSG00000123843 C4BPB C4BP complement component 4 binding protein beta protein-coding 208-22 chr18 65032546 65032833 + 1.33333 NA Intergenic L1MB1|LINE|L1 -717563 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 189.167-13 chr12 105418304 105418602 + 1.33333 NA Intergenic Intergenic 87762 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 302.333-15 chr8 38768256 38768499 + 1.33333 NA intron (NM_001352804, intron 1 of 10) intron (NM_001352804, intron 1 of 10) 11102 NM_001352790 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 286-26 chr8 120231293 120231657 + 1.33333 NA exon (NM_021110, exon 19 of 48) exon (NM_021110, exon 19 of 48) 106373 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 204.833-12 chr2 17631221 17631484 + 1.33333 NA intron (NM_001366805, intron 2 of 2) intron (NM_001366805, intron 2 of 2) 90656 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 327.333-11 chr7 51192001 51192322 + 1.33333 NA intron (NM_015198, intron 3 of 12) intron (NM_015198, intron 3 of 12) 124648 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 321.666-4 chr8 18813766 18814232 + 1.33333 NA intron (NM_015310, intron 4 of 15) MIRc|SINE|MIR -5132 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 236.666-7 chr4 41685049 41685250 + 1.33333 NA intron (NM_001330786, intron 19 of 22) intron (NM_001330786, intron 19 of 22) 63821 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 182-26 chr20 58180581 58180862 + 1.33333 NA Intergenic MER96B|DNA|hAT-Tip100 29819 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 283.333-19 chr8 23541939 23542216 + 1.33333 NA intron (NM_001317814, intron 2 of 4) intron (NM_001317814, intron 2 of 4) 13121 NM_001317813 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 669.166-2 chr3 51982143 51982855 + 1.33333 NA intron (NM_001316331, intron 3 of 16) intron (NM_001316331, intron 3 of 16) -1036 NM_001198897 95 Hs.334707 NM_000666 ENSG00000243989 ACY1 ACY-1|ACY1D|HEL-S-5 aminoacylase 1 protein-coding 248.167-16 chr22 29994174 29994520 + 1.33333 NA intron (NM_153051, intron 7 of 18) intron (NM_153051, intron 7 of 18) -12702 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 286.166-2 chr22 31757475 31757863 + 1.33333 NA intron (NR_146296, intron 2 of 42) intron (NR_146296, intron 2 of 42) 3646 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 300.5-22 chr6 153651303 153651551 + 1.33333 NA Intergenic Intergenic -359069 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 223.667-13 chr12 22817836 22818151 + 1.33333 NA Intergenic ERVL-E-int|LTR|ERVL 192822 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 309-22 chr8 138102670 138103216 + 1.33333 NA Intergenic MER20|DNA|hAT-Charlie -19398 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 187-39 chr6 94059527 94059738 + 1.33333 NA Intergenic Intergenic 341329 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 182.666-3 chr14 84145721 84145922 + 1.33333 NA Intergenic LTR16E1|LTR|ERVL -1126111 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 170.333-41 chr3 134331275 134331562 + 1.33333 NA Intergenic Intergenic 17842 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 166.333-50 chr7 81501435 81501840 + 1.33333 NA Intergenic Intergenic 60182 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 362.333-5 chr13 20869855 20870454 + 1.33333 NA intron (NM_022459, intron 1 of 22) AluSx|SINE|Alu 32620 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 259.333-3 chr1 115783133 115783633 + 1.33333 NA Intergenic MIRc|SINE|MIR -14578 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 239.999 chr7 94286228 94286539 + 1.33333 NA Intergenic Intergenic 105809 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 480.667-4 chr2 15534054 15534718 + 1.33333 NA intron (NR_052013, intron 9 of 50) intron (NR_052013, intron 9 of 50) 26948 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 293.5-5 chr1 117058872 117059342 + 1.33333 NA intron (NR_110786, intron 1 of 3) intron (NR_110786, intron 1 of 3) 383 NR_110786 101929099 Hs.559118 NR_110786 ENSG00000236137 LOC101929099 - uncharacterized LOC101929099 ncRNA 283.501 chr21 46638508 46639117 + 1.33333 NA intron (NM_001286678, intron 2 of 6) L1MEf|LINE|L1 3138 NM_206962 3275 Hs.154163 NM_001535 ENSG00000160310 PRMT2 HRMT1L1 protein arginine methyltransferase 2 protein-coding 418-2 chr12 14898857 14899339 + 1.33333 NA Intergenic L1MEi|LINE|L1 -13244 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 307.166-3 chr17 40290483 40291095 + 1.33333 NA intron (NM_001254, intron 2 of 11) MER44B|DNA|TcMar-Tigger 2910 NM_001254 990 Hs.405958 NM_001254 ENSG00000094804 CDC6 CDC18L|HsCDC18|HsCDC6|MGORS5 cell division cycle 6 protein-coding 234-8 chr11 40732556 40732842 + 1.33333 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -439569 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 336.333 chr1 21021569 21022143 + 1.33333 NA intron (NM_003760, intron 2 of 31) intron (NM_003760, intron 2 of 31) -33424 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 247.333-11 chr2 70289431 70289785 + 1.33333 NA intron (NM_003096, intron 1 of 3) AluJb|SINE|Alu 3616 NM_001317167 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 275-25 chr6 23548108 23548364 + 1.33333 NA Intergenic LTR78B|LTR|ERV1 -577979 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 257-11 chr14 31007514 31007762 + 1.33333 NA intron (NM_001083893, intron 1 of 17) AluJr|SINE|Alu 7104 NR_030354 693209 NR_030354 ENSG00000207952 MIR624 MIRN624|hsa-mir-624|mir-624 microRNA 624 ncRNA 348.666-5 chr12 7427795 7428146 + 1.33333 NA intron (NM_001297650, intron 4 of 19) MamRep605|LTR?|LTR? 16215 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 398.5-8 chr3 181278631 181279145 + 1.33333 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 47151 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 248.667-35 chr7 80942320 80942616 + 1.33333 NA Intergenic Intergenic -20079 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 337.667-12 chr2 74249937 74250524 + 1.33333 NA intron (NM_133478, intron 17 of 30) intron (NM_133478, intron 17 of 30) 51615 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 199.167-2 chr10 69636942 69637490 + 1.33333 NA Intergenic Intergenic 6969 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 276-20 chr5 64580396 64580681 + 1.33333 NA intron (NM_001271891, intron 1 of 3) intron (NM_001271891, intron 1 of 3) 4888 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 286.833-4 chr14 74099158 74099562 + 1.33333 NA intron (NM_001024674, intron 4 of 5) intron (NM_001024674, intron 4 of 5) 14407 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 166.166-3 chr2 56749763 56749938 + 1.33333 NA Intergenic Intergenic -564080 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 176-29 chr4 53854095 53854436 + 1.33333 NA Intergenic L1MA10|LINE|L1 133017 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 261.5-8 chr1 223090006 223090290 + 1.33333 NA Intergenic Intergenic 53100 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 281.333 chr1 179574072 179574339 + 1.33333 NA intron (NM_001297575, intron 1 of 6) intron (NM_001297575, intron 1 of 6) 1743 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 367-23 chr5 171337914 171338319 + 1.33333 NA Intergenic Intergenic -28002 NR_145720 109616973 NR_145720 ENSG00000206909 SNORA70J - small nucleolar RNA, H/ACA box 70J snoRNA 417-2 chr18 48004667 48005116 + 1.33333 NA Intergenic MER58A|DNA|hAT-Charlie -73745 NM_001135937 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 323.166-4 chr3 136746550 136746887 + 1.33333 NA intron (NM_005862, intron 1 of 33) AluSx|SINE|Alu 5660 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 164-59 chrX 149512263 149512664 + 1.33333 NA Intergenic Intergenic -7157 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 382.166-3 chr4 99117732 99118514 + 1.33333 NA intron (NR_037884, intron 1 of 9) intron (NR_037884, intron 1 of 9) 26175 NM_000670 127 Hs.1219 NM_000670 ENSG00000198099 ADH4 ADH-2|HEL-S-4 alcohol dehydrogenase 4 (class II), pi polypeptide protein-coding 248-29 chr4 91049854 91050142 + 1.33333 NA intron (NM_001145065, intron 9 of 10) MIRc|SINE|MIR 814967 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 378.5-2 chr11 82174475 82174841 + 1.33333 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 229255 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 476.999-2 chr5 42950129 42950566 + 1.33333 NA Intergenic Intergenic 42986 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 316.333-20 chr5 157130990 157131291 + 1.33333 NA Intergenic Intergenic 11635 NM_001100816 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 215.667-27 chr3 6134141 6134605 + 1.33333 NA Intergenic L1MC5|LINE|L1 671076 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 271.666-11 chr9 30641319 30641658 + 1.33333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -233034 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 391.667-2 chr3 129627890 129628312 + 1.33333 NA Intergenic Intergenic -21362 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 237-20 chr2 175478663 175479047 + 1.33333 NA Intergenic Intergenic -297145 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 299.166 chr1 154719941 154720391 + 1.33333 NA intron (NM_170782, intron 5 of 7) intron (NM_170782, intron 5 of 7) -92169 NM_001365046 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 164.333-40 chr5 97757482 97757661 + 1.33333 NA Intergenic Intergenic -83187 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 186.166-7 chrX 141969213 141969411 + 1.33333 NA Intergenic HAL1|LINE|L1 65418 NM_005462 9947 Hs.132194 NM_005462 ENSG00000155495 MAGEC1 CT7|CT7.1 MAGE family member C1 protein-coding 257.834-5 chr2 49505516 49505794 + 1.33333 NA Intergenic MER6A|DNA|TcMar-Tigger -351128 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 165.833-18 chr17 9401648 9401818 + 1.33333 NA intron (NM_004853, intron 6 of 7) intron (NM_004853, intron 6 of 7) 174087 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 415.999 chr1 87316432 87316803 + 1.33333 NA Intergenic L2a|LINE|L2 -12263 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 223.666-2 chr12 26035593 26035871 + 1.33333 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -16832 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 168-10 chr10 119642796 119642926 + 1.33333 NA Intergenic MIRb|SINE|MIR -8509 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 379.833-2 chr19 41835089 41835623 + 1.33333 NA Intergenic Intergenic 8371 NM_001291419 147719 Hs.98660 NM_173506 ENSG00000273111 LYPD4 SMR LY6/PLAUR domain containing 4 protein-coding 184.5-47 chr5 175529771 175529936 + 1.33333 NA TTS (NM_022754) TTS (NM_022754) 51293 NM_001322980 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 257.667-13 chr20 13225309 13225698 + 1.33333 NA intron (NM_080826, intron 1 of 5) intron (NM_080826, intron 1 of 5) 4229 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 261.5-6 chr1 166946071 166946310 + 1.33333 NA intron (NM_199351, intron 3 of 9) intron (NM_199351, intron 3 of 9) 29350 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 335.333 chr1 223129548 223130031 + 1.33333 NA intron (NM_003268, intron 5 of 5) intron (NM_003268, intron 5 of 5) 13459 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 207.167-17 chr3 97268500 97268860 + 1.33333 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -170927 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 227.667-16 chr16 66868069 66868385 + 1.33333 NA Intergenic Intergenic -12288 NM_001329931 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 173.333-10 chr15 64591349 64591501 + 1.33333 NA intron (NM_015042, intron 1 of 8) AluSc|SINE|Alu 92005 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 187.333-30 chr3 170368528 170368760 + 1.33333 NA intron (NM_001145097, intron 1 of 5) intron (NM_001145097, intron 1 of 5) 9021 NM_001145097 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 249.666-6 chr16 90049402 90049751 + 1.33333 NA Intergenic Intergenic -1793 NR_027336 100130015 Hs.431792 NR_027335 ENSG00000222019 URAHP URAH urate (hydroxyiso-) hydrolase, pseudogene pseudo 285.667-6 chr12 10194548 10194937 + 1.33333 NA Intergenic L2|LINE|L2 15710 NM_153022 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 188-24 chr2 46847411 46847724 + 1.33333 NA intron (NR_024452, intron 1 of 2) intron (NR_024452, intron 1 of 2) 19703 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 247-35 chr9 19922398 19922760 + 1.33333 NA Intergenic Intergenic -135560 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 164.167-7 chr10 42993906 42994038 + 1.33333 NA Intergenic L1MB4|LINE|L1 -3591 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 269.333-10 chr2 219450623 219450934 + 1.33333 NA intron (NM_005876, intron 4 of 40) intron (NM_005876, intron 4 of 40) -10034 NM_001173476 10290 Hs.21639 NM_005876 ENSG00000072195 SPEG APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta striated muscle enriched protein kinase protein-coding 330.666-2 chr2 124059766 124060070 + 1.33333 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 34631 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 223.5-3 chr1 200817712 200818016 + 1.33333 NA intron (NM_001297708, intron 4 of 16) intron (NM_001297708, intron 4 of 16) -55117 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 364.499 chr8 16533609 16533937 + 1.33333 NA Intergenic Intergenic -340982 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 256.167-17 chr4 166594476 166594952 + 1.33333 NA Intergenic L1M1|LINE|L1 639712 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 237.333-30 chr5 41931526 41931839 + 1.33333 NA intron (NM_012176, intron 3 of 6) L2c|LINE|L2 6401 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 164.667-32 chr20 7759921 7760144 + 1.33333 NA Intergenic Intergenic 180426 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 281.999-3 chr3 29582853 29583242 + 1.33333 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 301735 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 204-45 chr9 36465089 36465255 + 1.33333 NA Intergenic L1MB7|LINE|L1 -63974 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 332-22 chr5 52788996 52789536 + 1.33333 NA intron (NM_181501, intron 1 of 28) intron (NM_181501, intron 1 of 28) 1350 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 241.999-2 chr6 2354428 2354632 + 1.33333 NA intron (NR_046229, intron 4 of 6) intron (NR_046229, intron 4 of 6) 108777 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 383.834 chr19 2096079 2096586 + 1.33333 NA promoter-TSS (NM_001039846) promoter-TSS (NM_001039846) -6 NM_130807 126308 Hs.744938 NM_130807 ENSG00000172081 MOB3A MOB-LAK|MOB1C|MOBKL2A|moblak MOB kinase activator 3A protein-coding 260.999-2 chr2 85614202 85614510 + 1.33333 NA intron (NM_001256727, intron 1 of 12) AluSx1|SINE|Alu -1830 NM_001256725 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 197-29 chr6 55375090 55375420 + 1.33333 NA intron (NM_207410, intron 6 of 8) L1P3|LINE|L1 47786 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 248.999-2 chr3 56439849 56440053 + 1.33333 NA intron (NR_132749, intron 1 of 17) L1M5|LINE|L1 28516 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 292-22 chr5 116662575 116662928 + 1.33333 NA Intergenic Intergenic -87928 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 215.833-4 chr10 60816125 60816307 + 1.33333 NA Intergenic Intergenic 37738 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 335-13 chr7 139341226 139341549 + 1.33333 NA promoter-TSS (NM_197964) promoter-TSS (NM_197964) 50 NM_197964 154791 Hs.718441 NM_197964 ENSG00000164898 FMC1 C7orf55|HSPC268 formation of mitochondrial complex V assembly factor 1 homolog protein-coding 213.333-30 chr5 46096695 46096883 + 1.33333 NA Intergenic Intergenic -400409 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 341.5-4 chr10 18793969 18794559 + 1.33333 NA Intergenic Intergenic 134833 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 240.666-12 chr6 135871649 135872045 + 1.33333 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 20146 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 189.833-2 chr1 243950292 243950460 + 1.33333 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 32974 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 309.333-3 chr10 54468067 54468312 + 1.33333 NA intron (NM_001142773, intron 2 of 31) L1MA4A|LINE|L1 -18041 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 320.833-9 chr8 17549948 17550332 + 1.33333 NA intron (NM_003046, intron 4 of 11) intron (NM_003046, intron 4 of 11) 11363 NM_003046 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 172.5-52 chr7 134514512 134514801 + 1.33333 NA Intergenic Intergenic -12911 NM_020299 57016 Hs.116724 NM_020299 ENSG00000198074 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1 member B10 protein-coding 262.499 chr11 78101151 78101521 + 1.33333 NA intron (NM_024079, intron 12 of 12) intron (NM_024079, intron 12 of 12) -21474 NM_001204055 4718 Hs.407860 NM_004549 ENSG00000151366 NDUFC2 B14.5b|CI-B14.5b|HLC-1|NADHDH2 NADH:ubiquinone oxidoreductase subunit C2 protein-coding 334.333-7 chr18 2455360 2455819 + 1.33333 NA Intergenic Intergenic 115916 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 294.667-5 chr10 60611161 60611742 + 1.33333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -38495 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 358.499-2 chr17 43907551 43907871 + 1.33333 NA promoter-TSS (NM_001278373) promoter-TSS (NM_001278373) -175 NM_001278374 4355 Hs.514208 NM_005374 ENSG00000108852 MPP2 DLG2 membrane palmitoylated protein 2 protein-coding 165.667-48 chr6 136128370 136128573 + 1.33333 NA intron (NM_018945, intron 3 of 12) intron (NM_018945, intron 3 of 12) -55644 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 242-25 chr5 6291847 6292148 + 1.33333 NA Intergenic MLT2D|LTR|ERVL 45295 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 231.833-6 chr16 56207562 56208053 + 1.33333 NA intron (NM_138736, intron 2 of 7) intron (NM_138736, intron 2 of 7) -13282 NR_026889 26077 Hs.721567 NR_026889 ENSG00000261439 DKFZP434H168 - uncharacterized LOC26077 ncRNA 221.666-3 chr13 39636230 39636477 + 1.33333 NA Intergenic Intergenic -19274 NR_026745 57511 Hs.507805 NM_020751 ENSG00000133103 COG6 CDG2L|COD2|SHNS component of oligomeric golgi complex 6 protein-coding 271.166 chr14 96100267 96100678 + 1.33333 NA Intergenic (CCCTCCT)n|Simple_repeat|Simple_repeat 61110 NM_001289139 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 350.666-2 chr17 47183096 47183658 + 1.33333 NA intron (NM_001256, intron 1 of 18) intron (NM_001256, intron 1 of 18) 5918 NM_001256 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 234.333-14 chr17 73931544 73931833 + 1.33333 NA Intergenic MIR|SINE|MIR -103151 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 277.666-10 chrX 109635365 109635638 + 1.33333 NA Intergenic Intergenic -10329 NM_012282 23630 Hs.522753 NM_012282 ENSG00000176076 KCNE5 KCNE1L potassium voltage-gated channel subfamily E regulatory subunit 5 protein-coding 371-16 chr8 115348259 115348699 + 1.33333 NA Intergenic MIR3|SINE|MIR 319534 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 353.333-6 chr12 15530854 15531412 + 1.33333 NA intron (NM_030667, intron 12 of 26) L1M3f|LINE|L1 -15478 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 379.333-3 chr13 95404543 95405085 + 1.33333 NA Intergenic Intergenic -28785 NM_001160100 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|HELIX|OSP-L|OSPL claudin 10 protein-coding 336-10 chr2 112692207 112692770 + 1.33333 NA Intergenic Intergenic -28998 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 305.499 chr14 44425712 44425984 + 1.33333 NA Intergenic L1MA3|LINE|L1 81435 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 345.333-7 chr20 54654919 54655299 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR 179516 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 278.666-8 chr2 101003461 101003753 + 1.33333 NA intron (NM_000993, intron 2 of 4) intron (NM_000993, intron 2 of 4) 1318 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 319.333-13 chr5 76166598 76167225 + 1.33333 NA intron (NM_014979, intron 2 of 12) intron (NM_014979, intron 2 of 12) 83528 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 169.5-19 chr2 74771982 74772116 + 1.33333 NA Intergenic Intergenic -60606 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 372.666-7 chr3 104133582 104134009 + 1.33333 NA Intergenic LTR9C|LTR|ERV1 -609679 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 196.5-48 chr9 116045407 116045784 + 1.33333 NA Intergenic L1MB8|LINE|L1 -108196 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 312.666-2 chr10 126830097 126830463 + 1.33333 NA Intergenic L1MA5A|LINE|L1 -75129 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 308.333-8 chr2 43798047 43798445 + 1.33333 NA intron (NM_016008, intron 8 of 12) intron (NM_016008, intron 8 of 12) 24207 NM_001348912 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 244.166-4 chr12 5965534 5965798 + 1.33333 NA intron (NM_000552, intron 47 of 51) intron (NM_000552, intron 47 of 51) -19434 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 216.333-36 chr5 132581421 132581784 + 1.33333 NA intron (NM_005732, intron 5 of 24) intron (NM_005732, intron 5 of 24) 24625 NM_005732 10111 Hs.633509 NM_005732 ENSG00000113522 RAD50 NBSLD|RAD502|hRad50 RAD50 double strand break repair protein protein-coding 309.999-3 chr7 47017445 47017754 + 1.33333 NA Intergenic L1M5|LINE|L1 -320477 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 249.166-5 chr7 133006283 133006706 + 1.33333 NA intron (NM_001317177, intron 3 of 8) (ATAA)n|Simple_repeat|Simple_repeat 28421 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 205.833-26 chr7 95505117 95505281 + 1.33333 NA intron (NM_145872, intron 2 of 2) L1M5|LINE|L1 19256 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 327.667-13 chr5 156600538 156600977 + 1.33333 NA intron (NM_001128209, intron 5 of 7) L1MA6|LINE|L1 -249538 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 288.833-11 chr3 122305637 122306069 + 1.33333 NA Intergenic Intergenic -19395 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 200.667-22 chr17 78040022 78040279 + 1.33333 NA intron (NM_018996, intron 3 of 20) intron (NM_018996, intron 3 of 20) 35913 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 295.833-7 chr5 58107427 58107984 + 1.33333 NA TTS (NR_104669) TTS (NR_104669) 14636 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 271.666-8 chr7 34627220 34627722 + 1.33333 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -30747 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 314.5-8 chr15 71447247 71447608 + 1.33333 NA intron (NM_024817, intron 6 of 16) AluSc|SINE|Alu -99809 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 228.667-31 chr4 61811245 61811518 + 1.33333 NA intron (NM_001371343, intron 8 of 23) L1MB8|LINE|L1 350384 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 218.666-13 chr4 76262177 76262472 + 1.33333 NA intron (NM_001242939, intron 2 of 6) Ricksha|DNA|MULE-MuDR 10603 NM_001136570 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 193.333-45 chr3 97715981 97716146 + 1.33333 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -48458 NM_177976 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 407.5-9 chr2 120755887 120756327 + 1.33333 NA intron (NM_001371271, intron 1 of 13) L1ME1|LINE|L1 20239 NM_001371271 310-16 chr17 76229842 76230211 + 1.33333 NA intron (NM_052916, intron 1 of 18) intron (NM_052916, intron 1 of 18) 10467 NM_001330501 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 347.333-3 chr10 101042833 101043172 + 1.33333 NA Intergenic CpG 11763 NM_030971 81855 Hs.283844 NM_030971 ENSG00000107819 SFXN3 BA108L7.2|SFX3|SLC56A3 sideroflexin 3 protein-coding 264-10 chr12 10216115 10216382 + 1.33333 NA intron (NM_001363598, intron 1 of 2) AluSz|SINE|Alu 3371 NM_001363598 23710 Hs.524250 NM_031412 ENSG00000139112 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA type A receptor associated protein like 1 protein-coding 283.5 chr1 114471844 114472252 + 1.33333 NA intron (NM_015906, intron 1 of 19) MER46C|DNA|TcMar-Tigger 39155 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 216-30 chr21 22564598 22564815 + 1.33333 NA Intergenic Intergenic 466089 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 286.999-2 chr17 77010952 77011332 + 1.33333 NA Intergenic FLAM_C|SINE|Alu -41943 NR_136417 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 284.166 chr1 109398021 109398349 + 1.33333 NA promoter-TSS (NM_002959) promoter-TSS (NM_002959) -267 NM_002959 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 289.166 chr13 45731864 45732087 + 1.33333 NA Intergenic Intergenic 29506 NM_001286342 220082 Hs.186363 NM_152719 ENSG00000174015 SPERT CBY2|NURIT spermatid associated protein-coding 211-26 chr2 96549905 96550169 + 1.33333 NA exon (NM_001319085, exon 5 of 7) exon (NM_001319085, exon 5 of 7) 12158 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 265-18 chr4 85904703 85904996 + 1.33333 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -25167 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 312.666-4 chr17 68292320 68292756 + 1.33333 NA intron (NM_001352902, intron 1 of 12) intron (NM_001352902, intron 1 of 12) 403 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 225.666-4 chr2 19957151 19957340 + 1.33333 NA intron (NM_001006657, intron 12 of 27) intron (NM_001006657, intron 12 of 27) 32860 NM_020779 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 264-25 chr5 96973457 96973755 + 1.33333 NA intron (NM_175920, intron 1 of 17) MER2|DNA|TcMar-Tigger 15173 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 195.333-15 chr19 52963410 52963675 + 1.33333 NA promoter-TSS (NM_001202473) promoter-TSS (NM_001202473) -631 NM_001202473 100529240 Hs.675715 NM_001202473 ENSG00000221874 ZNF816-ZNF321P ZNF816-ZNF321 ZNF816-ZNF321P readthrough protein-coding 261.333-8 chr2 44178314 44178653 + 1.33333 NA intron (NM_177969, intron 1 of 4) AluSq2|SINE|Alu 9608 NM_177968 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 259-32 chr5 127030398 127030718 + 1.33333 NA promoter-TSS (NM_178450) promoter-TSS (NM_178450) 0 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 216.666-7 chr7 105776120 105776305 + 1.33333 NA intron (NM_152749, intron 3 of 3) intron (NM_152749, intron 3 of 3) -97050 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 509.999-3 chr3 190517730 190518302 + 1.33333 NA intron (NM_001364879, intron 1 of 10) GA-rich|Low_complexity|Low_complexity 3931 NM_001167930 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 201.333-25 chr2 141523599 141523811 + 1.33333 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 607996 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 338.167 chr1 65688528 65689041 + 1.33333 NA Intergenic Intergenic -103726 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 540.334 chr1 178344144 178344817 + 1.33333 NA intron (NM_004841, intron 1 of 15) intron (NM_004841, intron 1 of 15) 3029 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 168.666-4 chr4 77156736 77156928 + 1.33333 NA promoter-TSS (NM_004354) promoter-TSS (NM_004354) -375 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 258.666-2 chr10 111438620 111438879 + 1.33333 NA Intergenic Intergenic 324458 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 201.333-37 chr3 115232820 115232997 + 1.33333 NA Intergenic Intergenic -85620 NM_001348801 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 414.667-10 chr7 15621287 15621951 + 1.33333 NA intron (NM_005924, intron 2 of 2) intron (NM_005924, intron 2 of 2) -46328 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 434.666-2 chr1 196723745 196724195 + 1.33333 NA intron (NM_000186, intron 11 of 21) intron (NM_000186, intron 11 of 21) -50830 NM_021023 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 295.667-21 chr8 129707993 129708431 + 1.33333 NA Intergenic Intergenic -27973 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 207.667-7 chr12 8860430 8860759 + 1.33333 NA intron (NM_001282424, intron 15 of 24) intron (NM_001282424, intron 15 of 24) 15590 NM_001282424 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 281.833 chr1 12236808 12237111 + 1.33333 NA intron (NM_015378, intron 2 of 69) MIR|SINE|MIR 6929 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 474.167-5 chr4 152500769 152501247 + 1.33333 NA intron (NM_001349798, intron 2 of 13) intron (NM_001349798, intron 2 of 13) -11592 NR_036092 100422896 NR_036092 ENSG00000264678 MIR3140 mir-3140 microRNA 3140 ncRNA 182-48 chr8 86397601 86397842 + 1.33333 NA intron (NM_007013, intron 5 of 24) intron (NM_007013, intron 5 of 24) 55174 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 359.166-3 chr4 174132030 174132412 + 1.33333 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 88177 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 305.333-9 chr4 56096295 56096691 + 1.33333 NA Intergenic AluJb|SINE|Alu -73702 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 272.5-25 chr8 126795791 126796172 + 1.33333 NA Intergenic Intergenic -217173 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 300-9 chr2 38373809 38374348 + 1.33333 NA intron (NM_001330462, intron 1 of 13) AluSp|SINE|Alu 2452 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 163.5-41 chr6 9757024 9757269 + 1.33333 NA Intergenic Intergenic -647356 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 280-18 chr3 44509103 44509401 + 1.33333 NA intron (NM_001287349, intron 1 of 4) L1ME3Cz|LINE|L1 1365 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 195-37 chr5 66033284 66033581 + 1.33333 NA intron (NM_001253697, intron 14 of 25) L2|LINE|L2 -87859 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 487.666-2 chr15 88834186 88834776 + 1.33333 NA intron (NM_001369268, intron 1 of 18) intron (NM_001369268, intron 1 of 18) 31038 NM_001135 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 222.667-41 chr8 109551937 109552214 + 1.33333 NA intron (NM_198120, intron 2 of 6) intron (NM_198120, intron 2 of 6) 11449 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 297-14 chr2 195180460 195180903 + 1.33333 NA Intergenic Intergenic 450086 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 232-36 chr5 67261871 67262161 + 1.33333 NA Intergenic Intergenic -65217 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 206.833-17 chr4 184649392 184649548 + 1.33333 NA promoter-TSS (NM_152683) promoter-TSS (NM_152683) 5 NM_032991 836 Hs.141125 NM_004346 ENSG00000164305 CASP3 CPP32|CPP32B|SCA-1 caspase 3 protein-coding 254.667-15 chr18 74463048 74463253 + 1.33333 NA Intergenic Intergenic -5882 NM_001044369 125704 Hs.371690 NM_001044369 ENSG00000187773 DIPK1C C18orf51|FAM69C divergent protein kinase domain 1C protein-coding 251.667-33 chr6 127576701 127577067 + 1.33333 NA promoter-TSS (NM_001010905) promoter-TSS (NM_001010905) -290 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 285.666-11 chr5 139291348 139291722 + 1.33333 NA intron (NM_001282278, intron 4 of 16) intron (NM_001282278, intron 4 of 16) -2205 NM_018834 9782 Hs.268939 NM_018834 ENSG00000015479 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 391.5-3 chr14 45679427 45679911 + 1.33333 NA Intergenic Intergenic 35933 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 202.333-31 chr7 11003350 11003536 + 1.33333 NA intron (NR_033436, intron 3 of 16) intron (NR_033436, intron 3 of 16) 29571 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 223.667-29 chr2 51935399 51935740 + 1.33333 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -435079 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 207.5-31 chr6 56688598 56688867 + 1.33333 NA intron (NM_001144770, intron 6 of 94) intron (NM_001144770, intron 6 of 94) -45843 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 403-2 chr14 58239672 58240312 + 1.33333 NA Intergenic Intergenic -4813 NR_038123 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 210-48 chr9 13253113 13253289 + 1.33333 NA intron (NM_001330637, intron 1 of 46) intron (NM_001330637, intron 1 of 46) 26363 NM_001261406 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 246.666-3 chr14 67980991 67981188 + 1.33333 NA intron (NM_133509, intron 7 of 10) FLAM_C|SINE|Alu 157497 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 183.167-5 chr11 15878373 15878771 + 1.33333 NA Intergenic L2a|LINE|L2 91049 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 199.833-8 chr11 65264699 65264974 + 1.33333 NA intron (NM_002689, intron 1 of 17) L2a|LINE|L2 2874 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 453-7 chr8 121812956 121813523 + 1.33333 NA Intergenic Tigger2a|DNA|TcMar-Tigger -171799 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 174-9 chr11 66480793 66480993 + 1.33333 NA promoter-TSS (NR_120586) promoter-TSS (NR_120586) 459 NM_001256670 10072 Hs.502914 NM_005700 ENSG00000254986 DPP3 DPPIII dipeptidyl peptidase 3 protein-coding 321.666-3 chr7 46386050 46386379 + 1.33333 NA Intergenic Intergenic 310908 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 232.833-2 chr1 95306665 95306922 + 1.33333 NA Intergenic Charlie15a|DNA|hAT-Charlie 11470 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 338.333-8 chr3 190199134 190199614 + 1.33333 NA Intergenic Tigger1|DNA|TcMar-Tigger -76937 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 274.333-2 chr1 171923011 171923413 + 1.33333 NA intron (NM_001278252, intron 2 of 14) L1MB8|LINE|L1 59020 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 471.333 chr1 103106175 103106895 + 1.33333 NA intron (NM_001854, intron 1 of 66) intron (NM_001854, intron 1 of 66) 1961 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 395.334-5 chr6 28355828 28356302 + 1.33333 NA 5' UTR (NM_001135215, exon 1 of 8) 5' UTR (NM_001135215, exon 1 of 8) 206 NM_001135215 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 231.666 chr10 43033469 43033683 + 1.33333 NA Intergenic L1M4c|LINE|L1 36013 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 228.166-3 chr2 73375941 73376206 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -9685 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 319-4 chr16 8932510 8932811 + 1.33333 NA intron (NM_003470, intron 1 of 30) intron (NM_003470, intron 1 of 30) 3979 NM_001286458 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 247.666-10 chr8 139362382 139362616 + 1.33333 NA Intergenic Intergenic 340624 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 234.167-27 chr8 35867776 35868158 + 1.33333 NA Intergenic LOR1a|LTR|ERV1 -157647 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 252.334-2 chr10 50970835 50971153 + 1.33333 NA Intergenic Intergenic -19894 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 180.5-31 chr4 121277565 121277836 + 1.33333 NA Intergenic Intergenic -50217 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 293.666-4 chr16 55357995 55358488 + 1.33333 NA Intergenic L1PA13|LINE|L1 33682 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 236-23 chr7 37135804 37136018 + 1.33333 NA intron (NM_001206480, intron 13 of 21) L1PB1|LINE|L1 138115 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 237.5-31 chr3 88009098 88009357 + 1.33333 NA Intergenic L1PREC2|LINE|L1 26651 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 250.999 chr2 236175632 236175912 + 1.33333 NA Intergenic Intergenic -7386 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 288 chr1 1014551 1014906 + 1.33333 NA TTS (NM_005101) TTS (NM_005101) 1231 NM_005101 9636 Hs.458485 NM_005101 ENSG00000187608 ISG15 G1P2|IFI15|IMD38|IP17|UCRP|hUCRP ISG15 ubiquitin like modifier protein-coding 180-15 chr12 33325437 33325663 + 1.33333 NA Intergenic Intergenic 114269 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 343-10 chr6 142051508 142052094 + 1.33333 NA Intergenic L1MA1|LINE|L1 36998 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 301.666-10 chr2 40741419 40741686 + 1.33333 NA Intergenic Intergenic -229117 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 345.833 chr1 52211695 52212054 + 1.33333 NA intron (NM_007324, intron 1 of 17) intron (NM_007324, intron 1 of 17) 69780 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 201.666-2 chr8 87507085 87507284 + 1.33333 NA Intergenic Intergenic 366831 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 190.333-37 chr7 92560311 92560542 + 1.33333 NA TTS (NR_109929) TTS (NR_109929) 29623 NM_001288584 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 165.333-38 chr5 85285844 85286132 + 1.33333 NA Intergenic Intergenic -901108 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 166.5-16 chr14 65230739 65230872 + 1.33333 NA Intergenic Intergenic -8458 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 406.666 chr1 35267370 35267967 + 1.33333 NA Intergenic Intergenic -1041 NM_001350139 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 307.999 chr1 72971913 72972328 + 1.33333 NA Intergenic AluSz|SINE|Alu -334050 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 292.834 chr12 9596796 9597269 + 1.33333 NA intron (NM_002258, intron 5 of 5) Charlie9|DNA|hAT-Charlie 10884 NM_002258 3820 Hs.169824 NM_002258 ENSG00000111796 KLRB1 CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A killer cell lectin like receptor B1 protein-coding 485.333-9 chr8 120630521 120631256 + 1.33333 NA intron (NM_021021, intron 3 of 6) MLT1K|LTR|ERVL-MaLR -130365 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 227.001 chr1 190391588 190391789 + 1.33333 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 84322 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 285.999-3 chr5 5497112 5497347 + 1.33333 NA Intergenic Intergenic 74552 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 346.999-3 chr9 89180043 89180498 + 1.33333 NA Intergenic Intergenic -1452 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 287.667-4 chr10 66252088 66252547 + 1.33333 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) -673719 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 195.833-20 chr3 12484301 12484449 + 1.33333 NA promoter-TSS (NM_001321279) promoter-TSS (NM_001321279) -57 NM_001145394 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 356.333 chr1 85372733 85373177 + 1.33333 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) 31551 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 219.666-8 chr9 71633181 71633354 + 1.33333 NA Intergenic L1M8|LINE|L1 135246 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 216-50 chr9 130941780 130942056 + 1.33333 NA Intergenic Intergenic -2671 NM_032843 84929 Hs.133205 NM_032843 ENSG00000130720 FIBCD1 - fibrinogen C domain containing 1 protein-coding 257.667-12 chr2 178111965 178112432 + 1.33333 NA promoter-TSS (NM_152945) promoter-TSS (NM_152945) -239 NM_152945 129831 Hs.377257 NM_152945 ENSG00000155636 RBM45 DRB1|RB-1 RNA binding motif protein 45 protein-coding 239-20 chr22 21779274 21779652 + 1.33333 NA intron (NM_002745, intron 6 of 8) L2|LINE|L2 -43669 NR_130910 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 270-28 chr3 156670171 156670520 + 1.33333 NA Intergenic Intergenic -4245 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 299.833-15 chr5 73593455 73593889 + 1.33333 NA Intergenic MIRb|SINE|MIR 27929 NM_032175 84135 Hs.406703 NM_032175 ENSG00000164338 UTP15 NET21 UTP15 small subunit processome component protein-coding 345.333-10 chr8 135956831 135957340 + 1.33333 NA Intergenic Intergenic 499629 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 176.833-13 chr12 102740838 102741104 + 1.33333 NA Intergenic Intergenic 83428 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 211.333-26 chr3 33595203 33595523 + 1.33333 NA intron (NM_001365632, intron 19 of 37) intron (NM_001365632, intron 19 of 37) 64316 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 432-6 chr4 48655459 48655944 + 1.33333 NA intron (NM_015030, intron 3 of 63) (AT)n|Simple_repeat|Simple_repeat 124598 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 433.499-3 chr3 97721747 97722254 + 1.33333 NA intron (NM_001080448, intron 15 of 17) MamGypLTR3a|LTR|Gypsy -42521 NM_177976 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 257.333-10 chr15 83058460 83058808 + 1.33333 NA intron (NM_001011885, intron 1 of 6) AluSx|SINE|Alu 8618 NM_001011885 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 188-21 chr18 64825547 64826033 + 1.33333 NA Intergenic Intergenic -565735 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 300.834-4 chr14 74608109 74608486 + 1.33333 NA intron (NM_000428, intron 1 of 35) intron (NM_000428, intron 1 of 35) 3940 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 255-32 chr5 123651401 123651699 + 1.33333 NA Intergenic Intergenic 106133 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 473.5-3 chr2 96604066 96604568 + 1.33333 NA exon (NM_001349260, exon 17 of 21) exon (NM_001349260, exon 17 of 21) 33674 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 314-20 chr7 47849051 47849325 + 1.33333 NA intron (NM_138295, intron 31 of 56) L1PB2|LINE|L1 53897 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 259.167-4 chr2 35402000 35402370 + 1.33333 NA Intergenic Intergenic -69220 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 259.833-6 chr14 59579127 59579445 + 1.33333 NA Intergenic L1ME4a|LINE|L1 -2474 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 198.667-13 chr14 56505027 56505263 + 1.33333 NA Intergenic Intergenic -9186 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 202.666-6 chr15 53024588 53024753 + 1.33333 NA Intergenic Intergenic -91695 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 274.667-17 chr3 147524060 147524411 + 1.33333 NA Intergenic L1PA13|LINE|L1 102908 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 212-37 chr5 6187743 6188049 + 1.33333 NA Intergenic Intergenic 149396 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 258.667-18 chr2 168375558 168375874 + 1.33333 NA Intergenic L1MA3|LINE|L1 -80556 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 257 chr1 51805024 51805243 + 1.33333 NA intron (NM_001101662, intron 19 of 30) intron (NM_001101662, intron 19 of 30) 31269 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 313.333-3 chr1 180322003 180322247 + 1.33333 NA intron (NM_032360, intron 6 of 7) L1MA2|LINE|L1 -47444 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 181.166-2 chr2 177877837 177878091 + 1.33333 NA intron (NM_001077197, intron 5 of 20) intron (NM_001077197, intron 5 of 20) 10792 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 203.5-39 chr7 136858013 136858174 + 1.33333 NA Intergenic MLT1D|LTR|ERVL-MaLR -10559 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 242.333-15 chr20 9226073 9226342 + 1.33333 NA intron (NM_182797, intron 1 of 35) intron (NM_182797, intron 1 of 35) 8817 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 163.333-59 chr9 103826618 103826934 + 1.33333 NA Intergenic Intergenic -172933 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 221.667-3 chr1 231531449 231531817 + 1.33333 NA intron (NR_028398, intron 2 of 10) intron (NR_028398, intron 2 of 10) 2964 NM_005999 7257 Hs.13318 NM_005999 ENSG00000116918 TSNAX C3PO|TRAX translin associated factor X protein-coding 300-6 chr12 100085702 100085966 + 1.33333 NA intron (NM_001006947, intron 9 of 12) intron (NM_001006947, intron 9 of 12) 57040 NM_015054 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 203.834-5 chr5 73412684 73412895 + 1.33333 NA Intergenic Intergenic 35988 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 218-36 chr5 170670192 170670453 + 1.33333 NA intron (NM_001278340, intron 2 of 8) intron (NM_001278340, intron 2 of 8) 11148 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 211.667-17 chr2 76975228 76975492 + 1.33333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -10605 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 311.666-8 chr3 145483233 145483624 + 1.33333 NA Intergenic Intergenic 585757 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 248-19 chr15 83543513 83543781 + 1.33333 NA intron (NM_001324186, intron 2 of 9) L1M1|LINE|L1 53033 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 230.166-4 chr2 27798822 27799032 + 1.33333 NA intron (NM_022128, intron 7 of 7) intron (NM_022128, intron 7 of 7) 27208 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 238.334-12 chr2 96291985 96292483 + 1.33333 NA intron (NM_014014, intron 16 of 44) intron (NM_014014, intron 16 of 44) 13312 NM_014014 23020 Hs.246112 NM_014014 ENSG00000144028 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein U5 subunit 200 protein-coding 620.833 chr1 229481783 229482644 + 1.33333 NA intron (NM_018230, intron 12 of 25) intron (NM_018230, intron 12 of 25) 26128 NM_018230 55746 Hs.12457 NM_018230 ENSG00000069248 NUP133 GAMOS8|NPHS18|hNUP133 nucleoporin 133 protein-coding 180.333-30 chr2 146957770 146957924 + 1.33333 NA Intergenic L1MB8|LINE|L1 370790 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 389.666-4 chr7 19622023 19622413 + 1.33333 NA Intergenic Intergenic 83218 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 187-35 chr5 63706046 63706338 + 1.33333 NA Intergenic Intergenic 256100 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 173-39 chr8 59090371 59090500 + 1.33333 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 28712 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 213.333-41 chr7 37832171 37832367 + 1.33333 NA Intergenic Intergenic -16328 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 179-45 chr9 83699255 83699410 + 1.33333 NA intron (NM_013438, intron 1 of 10) MER33|DNA|hAT-Charlie -8503 NR_135839 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 332-17 chr22 33191522 33191933 + 1.33333 NA Intergenic Intergenic 83198 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 167.166 chr1 186215254 186215392 + 1.33333 NA Intergenic Intergenic -80950 NM_005807 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 328.333-8 chr4 107508578 107509004 + 1.33333 NA Intergenic MER44A|DNA|TcMar-Tigger 211443 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 377.666 chr1 41175382 41175957 + 1.33333 NA intron (NM_001172218, intron 2 of 15) L2|LINE|L2 -12652 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 406.167-5 chr11 92448522 92449250 + 1.33333 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 96790 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 220.333-2 chr1 184360549 184360931 + 1.33333 NA Intergenic L2c|LINE|L2 -26289 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 346.999-2 chr2 67409551 67409871 + 1.33333 NA intron (NM_019002, intron 5 of 5) intron (NM_019002, intron 5 of 5) 12378 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 352.666-12 chr9 15642244 15642885 + 1.33333 NA intron (NM_001355547, intron 6 of 24) intron (NM_001355547, intron 6 of 24) 78586 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 229.333 chr1 114891317 114891596 + 1.33333 NA intron (NM_001282542, intron 15 of 30) intron (NM_001282542, intron 15 of 30) 36593 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 267.5-12 chr14 39304213 39304417 + 1.33333 NA exon (NM_001354140, exon 11 of 23) exon (NM_001354140, exon 11 of 23) 36930 NM_001354151 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 217-28 chr5 133993155 133993502 + 1.33333 NA intron (NM_003374, intron 1 of 8) L2b|LINE|L2 11440 NR_036624 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 371.499 chr6 49444025 49444342 + 1.33333 NA intron (NM_000255, intron 9 of 12) intron (NM_000255, intron 9 of 12) 19070 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 199.333-47 chr8 104513300 104513468 + 1.33333 NA intron (NM_001135703, intron 1 of 5) MIR3|SINE|MIR -28919 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 185.167-13 chr18 77207445 77207668 + 1.33333 NA Intergenic Intergenic -42292 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 211-25 chr2 54705471 54705854 + 1.33333 NA Intergenic Intergenic -19350 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 316.5-21 chr4 54041243 54041685 + 1.33333 NA intron (NM_012110, intron 3 of 5) Charlie4a|DNA|hAT-Charlie 23141 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 231.833-11 chr21 14696368 14696603 + 1.33333 NA Intergenic Intergenic -53378 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 330.499 chr10 76905606 76905961 + 1.33333 NA intron (NR_120655, intron 2 of 3) L2a|LINE|L2 17739 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 214-27 chr2 47606213 47606500 + 1.33333 NA Intergenic Intergenic -36025 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 169.333-54 chr6 54638794 54638961 + 1.33333 NA Intergenic Charlie17b|DNA|hAT-Charlie -207894 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 172.333-28 chr18 73521849 73522078 + 1.33333 NA Intergenic L1ME2|LINE|L1 197022 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 264.167-9 chr14 95915039 95915445 + 1.33333 NA intron (NR_132398, intron 2 of 2) intron (NR_132398, intron 2 of 2) 38470 NR_132398 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 224.166-3 chr19 34765886 34766093 + 1.33333 NA intron (NM_001007248, intron 3 of 3) L2|LINE|L2 7226 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 208.5-46 chr9 9453478 9453681 + 1.33333 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -345813 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 188.833-26 chr20 52259162 52259303 + 1.33333 NA Intergenic Intergenic -67247 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 265.666-3 chr11 73115617 73115849 + 1.33333 NA intron (NM_014824, intron 2 of 19) MLT2C1|LTR|ERVL 26585 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 409.5-7 chr20 12677718 12678199 + 1.33333 NA Intergenic MIR|SINE|MIR 259005 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 357.999 chr15 70643833 70644165 + 1.33333 NA Intergenic Intergenic 8750 NR_126482 104548973 NR_126482 ENSG00000280515 SALRNA2 SAL-RNA2|XLOC_025931 senescence associated long non-coding RNA 2 ncRNA 179.333-42 chr6 38363528 38363687 + 1.33333 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -117989 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 332-19 chr3 107871998 107872598 + 1.33333 NA intron (NR_024276, intron 3 of 7) Tigger3b|DNA|TcMar-Tigger 5770 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 217.667-15 chr12 121946409 121946647 + 1.33333 NA intron (NM_001178003, intron 7 of 17) L1ME1|LINE|L1 27936 NM_001178003 144406 Hs.709837 NM_144668 ENSG00000158023 WDR66 CFAP251|CaM-IP4|SPGF33 WD repeat domain 66 protein-coding 340.833-2 chr17 48047012 48047423 + 1.33333 NA Intergenic Intergenic -1142 NM_001330261 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 248-21 chr2 12094022 12094379 + 1.33333 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 87084 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 251-14 chr2 26925797 26926168 + 1.33333 NA intron (NM_020134, intron 3 of 12) LTR23|LTR|ERV1 -44655 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 236.333-13 chr2 9539058 9539272 + 1.33333 NA intron (NM_003183, intron 2 of 18) AluY|SINE|Alu 16665 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 263.333 chr1 22132471 22132685 + 1.33333 NA intron (NM_030761, intron 1 of 4) intron (NM_030761, intron 1 of 4) 10519 NM_030761 54361 Hs.25766 NM_030761 ENSG00000162552 WNT4 SERKAL|WNT-4 Wnt family member 4 protein-coding 426.333-4 chr5 178141773 178142305 + 1.33333 NA intron (NM_001288794, intron 4 of 11) L1MB7|LINE|L1 11025 NM_022762 64777 Hs.27222 NM_022762 ENSG00000145916 RMND5B GID2|GID2B required for meiotic nuclear division 5 homolog B protein-coding 236.667-37 chr9 29116715 29117006 + 1.33333 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 95439 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 281-28 chr9 31145126 31145478 + 1.33333 NA Intergenic Intergenic 236188 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 292.333-5 chr10 76192619 76192909 + 1.33333 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 410003 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 405.833-2 chr2 94986596 94987112 + 1.33333 NA Intergenic Intergenic -38801 NM_022438 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 238.499-2 chr14 102778915 102779103 + 1.33333 NA intron (NM_001199427, intron 1 of 7) intron (NM_001199427, intron 1 of 7) 1530 NM_145725 7187 Hs.510528 NM_003300 ENSG00000131323 TRAF3 CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118 TNF receptor associated factor 3 protein-coding 576 chr14 69553964 69554878 + 1.33333 NA Intergenic AluJb|SINE|Alu 20450 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 180.666-5 chr7 122539088 122539380 + 1.33333 NA intron (NM_001167940, intron 8 of 29) MSTD|LTR|ERVL-MaLR 159883 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 398.166 chr11 111695352 111695846 + 1.33333 NA intron (NM_015191, intron 4 of 14) MER5A1|DNA|hAT-Charlie 70790 NM_181699 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 305.666-2 chr8 100269472 100269842 + 1.33333 NA intron (NM_001353837, intron 4 of 9) intron (NM_001353837, intron 4 of 9) 32536 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 198.166-2 chr17 65106920 65107436 + 1.33333 NA intron (NR_110801, intron 2 of 2) MSTD|LTR|ERVL-MaLR 6366 NR_110801 100507002 Hs.729924 NR_110801 LOC100507002 - uncharacterized LOC100507002 ncRNA 179.334-4 chr15 70703016 70703522 + 1.33333 NA promoter-TSS (NM_001008224) promoter-TSS (NM_001008224) -987 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 250.667-14 chr16 83299395 83299704 + 1.33333 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -208797 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 172-16 chr14 79105793 79105994 + 1.33333 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -94089 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 169.333-5 chr1 172532247 172532519 + 1.33333 NA promoter-TSS (NM_016227) promoter-TSS (NM_016227) 34 NM_016227 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 271.499 chr6 98280138 98280347 + 1.33333 NA Intergenic Intergenic 255711 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 237-37 chr6 140513870 140514121 + 1.33333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -169819 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 163.333-56 chr8 14353260 14353486 + 1.33333 NA intron (NM_001322881, intron 2 of 6) L2a|LINE|L2 500137 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 302-8 chr16 53696367 53696871 + 1.33333 NA intron (NM_001328422, intron 2 of 3) intron (NM_001328422, intron 2 of 3) 7240 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 371.666-3 chr5 165497426 165497817 + 1.33333 NA Intergenic Intergenic 1027342 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 276.667-22 chr6 133111848 133112226 + 1.33333 NA Intergenic Intergenic 23957 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 277.333-25 chr3 28279725 28280092 + 1.33333 NA intron (NM_182523, intron 2 of 3) L1ME2z|LINE|L1 38289 NM_001331185 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 422.5-5 chr20 53828325 53828838 + 1.33333 NA Intergenic Intergenic 47128 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 248.666 chr1 201249981 201250277 + 1.33333 NA Intergenic MSTC|LTR|ERVL-MaLR -33323 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 191-9 chr11 124491004 124491289 + 1.33333 NA Intergenic L1MEc|LINE|L1 -50061 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 236-18 chr5 122657355 122657805 + 1.33333 NA intron (NR_109881, intron 8 of 11) MER113|DNA|hAT-Charlie -72980 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 197-41 chr9 11662304 11662573 + 1.33333 NA Intergenic L1M2|LINE|L1 -1030947 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 226.333-5 chr14 64786425 64786702 + 1.33333 NA promoter-TSS (NR_107009) promoter-TSS (NR_107009) -877 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 250-19 chr20 41546392 41546671 + 1.33333 NA intron (NM_032221, intron 2 of 36) intron (NM_032221, intron 2 of 36) 71846 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 274.333-24 chr8 120444888 120445420 + 1.33333 NA promoter-TSS (NM_022045) promoter-TSS (NM_022045) -4 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 173.5-51 chr8 20074142 20074331 + 1.33333 NA Intergenic Intergenic 108900 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 172.5-35 chr3 45219501 45219779 + 1.33333 NA Intergenic Intergenic 6647 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 270-41 chr8 112083506 112083950 + 1.33333 NA Intergenic Intergenic -559765 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 323.666 chr1 40617626 40617881 + 1.33333 NA Intergenic L1MEc|LINE|L1 47929 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 218.333-10 chr15 90578810 90579083 + 1.33333 NA intron (NM_001042574, intron 2 of 14) intron (NM_001042574, intron 2 of 14) 49023 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 173.333-14 chr17 42222241 42222600 + 1.33333 NA intron (NM_012448, intron 5 of 18) intron (NM_012448, intron 5 of 18) -27926 NM_001142623 84514 Hs.38039 NM_032484 ENSG00000167925 GHDC D11LGP1|LGP1 GH3 domain containing protein-coding 266.667-2 chr1 119336480 119336826 + 1.33333 NA intron (NR_146623, intron 2 of 3) intron (NR_146623, intron 2 of 3) 8401 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 328.333-11 chr6 134529884 134530172 + 1.33333 NA intron (NR_125855, intron 2 of 3) MIRc|SINE|MIR 9977 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 170.166 chr11 87173918 87174097 + 1.33333 NA intron (NR_033149, intron 4 of 13) intron (NR_033149, intron 4 of 13) 136073 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 229.833-16 chr5 62844028 62844267 + 1.33333 NA Intergenic LTR9|LTR|ERV1 265328 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 284.333-9 chr14 59639339 59639645 + 1.33333 NA intron (NM_021136, intron 3 of 8) L1MEg|LINE|L1 7528 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 253-11 chr16 4288340 4288609 + 1.33333 NA Intergenic Intergenic -15451 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 292.666-9 chr5 166371169 166371401 + 1.33333 NA Intergenic Intergenic 555085 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 193.666-2 chr11 34434409 34434652 + 1.33333 NA Intergenic Intergenic -4404 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 301.666-13 chr3 103598830 103599103 + 1.33333 NA Intergenic HERVL-int|LTR|ERVL -74850 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 252.667-17 chr3 55396315 55396681 + 1.33333 NA Intergenic Intergenic 84900 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 373.333-15 chrX 43333350 43333759 + 1.33333 NA Intergenic MER57A-int|LTR|ERV1 156560 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 302.666 chr1 172457020 172457283 + 1.33333 NA intron (NM_139240, intron 4 of 6) intron (NM_139240, intron 4 of 6) 4258 NM_001300760 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 405-4 chr11 60700825 60701376 + 1.33333 NA intron (NM_031457, intron 2 of 6) intron (NM_031457, intron 2 of 6) 1488 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 435.833 chr1 90964509 90965046 + 1.33333 NA intron (NM_201269, intron 2 of 5) intron (NM_201269, intron 2 of 5) 56731 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 503.332 chr1 154546403 154546886 + 1.33333 NA intron (NM_182499, intron 11 of 12) intron (NM_182499, intron 11 of 12) -6965 NR_046668 100874097 NR_046668 ENSG00000229780 UBE2Q1-AS1 - UBE2Q1 antisense RNA 1 ncRNA 199.333-13 chr12 58757485 58757743 + 1.33333 NA intron (NR_120452, intron 1 of 7) MER73|LTR|ERVL 24102 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 185.833-14 chr2 23239631 23240017 + 1.33333 NA Intergenic Intergenic -145355 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 406.333-8 chr6 63311970 63312449 + 1.33333 NA intron (NM_001143940, intron 1 of 4) L1MA8|LINE|L1 7768 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 253.5-28 chr5 77637856 77638104 + 1.33333 NA intron (NM_032109, intron 1 of 2) intron (NM_032109, intron 1 of 2) 717 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 270.666-7 chr2 110106590 110106906 + 1.33333 NA intron (NM_005434, intron 1 of 3) L1MD2|LINE|L1 9818 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 225.667-19 chr2 29977741 29978074 + 1.33333 NA Intergenic Intergenic -56321 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 321.666 chr2 95213609 95213997 + 1.33333 NA Intergenic Intergenic 47994 NM_001282398 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 208.333-5 chr1 151059510 151059790 + 1.33333 NA promoter-TSS (NM_001038707) promoter-TSS (NM_001038707) -1 NM_001038707 56882 Hs.22065 NM_020239 ENSG00000197622 CDC42SE1 SCIP1|SPEC1 CDC42 small effector 1 protein-coding 271.666-6 chr6 44302275 44302579 + 1.33333 NA exon (NM_020745, exon 18 of 22) exon (NM_020745, exon 18 of 22) -4729 NM_182539 202500 Hs.189183 NM_182539 ENSG00000146221 TCTE1 D6S46|DRC5|FAP155 t-complex-associated-testis-expressed 1 protein-coding 232-33 chr4 48990300 48990547 + 1.33333 NA intron (NM_001286791, intron 2 of 15) intron (NM_001286791, intron 2 of 15) 3781 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 293.999-4 chr4 102826875 102827231 + 1.33333 NA 5' UTR (NM_181892, exon 1 of 8) 5' UTR (NM_181892, exon 1 of 8) 130 NM_181892 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 177.167-13 chr17 50089478 50089617 + 1.33333 NA 3' UTR (NM_002204, exon 26 of 26) 3' UTR (NM_002204, exon 26 of 26) -5190 NM_001199898 5164 Hs.256667 NM_002611 ENSG00000005882 PDK2 PDHK2|PDKII pyruvate dehydrogenase kinase 2 protein-coding 211.5-23 chr18 8083966 8084411 + 1.33333 NA intron (NM_002845, intron 9 of 30) L2b|LINE|L2 282846 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 163.666 chr12 95888710 95888869 + 1.33333 NA intron (NM_182496, intron 9 of 15) intron (NM_182496, intron 9 of 15) 29837 NM_003095 6636 Hs.105465 NM_003095 ENSG00000139343 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 432.333-11 chr9 86727457 86728099 + 1.33333 NA Intergenic Intergenic 219728 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 211.666-6 chr20 49104624 49104900 + 1.33333 NA Intergenic AluJb|SINE|Alu 58450 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 367.5-7 chr6 63065798 63066292 + 1.33333 NA Intergenic Intergenic 253932 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 377.667-6 chr4 77044682 77045144 + 1.33333 NA Intergenic Intergenic 29997 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 232.667-13 chr16 71564941 71565191 + 1.33333 NA promoter-TSS (NR_103852) promoter-TSS (NR_103852) 50 NR_103852 100132529 Hs.710296 NR_103851 ENSG00000260886 TAT-AS1 - TAT antisense RNA 1 ncRNA 380.667 chr11 65590884 65591430 + 1.33333 NA intron (NM_001099409, intron 16 of 18) AluSc8|SINE|Alu 4839 NM_005714 10089 Hs.175218 NM_005714 ENSG00000173338 KCNK7 K2p7.1|TWIK3 potassium two pore domain channel subfamily K member 7 protein-coding 359.668 chr2 150045000 150045399 + 1.33333 NA Intergenic Intergenic -186008 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 341.333 chr1 92749161 92749462 + 1.33333 NA intron (NM_001308248, intron 1 of 18) intron (NM_001308248, intron 1 of 18) 35797 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 191.834-2 chr12 12356875 12357063 + 1.33333 NA promoter-TSS (NM_001330356) promoter-TSS (NM_001330356) 98 NR_024061 503693 Hs.67553 NR_024061 ENSG00000205791 LOH12CR2 LOH2CR12 loss of heterozygosity, 12, chromosomal region 2 ncRNA 348.666-11 chr6 125906154 125906542 + 1.33333 NA intron (NM_001199621, intron 9 of 14) intron (NM_001199621, intron 9 of 14) -12907 NM_001199622 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 228.333-3 chr1 217914922 217915259 + 1.33333 NA intron (NR_048550, intron 2 of 3) AluSz6|SINE|Alu 22190 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 223.333-18 chr16 21708655 21709062 + 1.33333 NA intron (NM_170664, intron 2 of 18) intron (NM_170664, intron 2 of 18) 3895 NM_170664 146183 Hs.408336 NM_144672 ENSG00000155719 OTOA CT108|DFNB22 otoancorin protein-coding 324.167-10 chr2 7315674 7316143 + 1.33333 NA Intergenic L1MC1|LINE|L1 -105353 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 419.999-3 chr8 102268885 102269332 + 1.33333 NA exon (NM_015902, exon 51 of 59) exon (NM_015902, exon 51 of 59) 29657 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 204.666-6 chr7 32379819 32380008 + 1.33333 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 48311 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 245.666-8 chr3 189303951 189304308 + 1.33333 NA intron (NM_198485, intron 4 of 5) L3b|LINE|CR1 -63535 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 337.999-3 chr20 57693537 57693872 + 1.33333 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -3018 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 310.166-3 chr3 2266098 2266539 + 1.33333 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 27489 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 215.5-12 chr4 22129432 22129874 + 1.33333 NA Intergenic Intergenic -180902 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 567.501 chr2 188368904 188369809 + 1.33333 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 71864 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 203.333-9 chr10 70285734 70285937 + 1.33333 NA Intergenic Intergenic -1831 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 319.334-2 chr1 65977312 65977846 + 1.33333 NA intron (NM_002600, intron 3 of 16) intron (NM_002600, intron 3 of 16) -15037 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 205.667-7 chr11 92732001 92732250 + 1.33333 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 183503 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 260.167-12 chr17 52252236 52252467 + 1.33333 NA Intergenic MIR|SINE|MIR -92334 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 180-16 chr12 106918396 106918576 + 1.33333 NA Intergenic Intergenic -37236 NM_001319661 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 267.333-14 chr2 233945105 233945438 + 1.33333 NA intron (NM_024080, intron 6 of 25) intron (NM_024080, intron 6 of 25) 27898 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 309.666-3 chr17 8564328 8564736 + 1.33333 NA intron (NM_001256012, intron 7 of 42) intron (NM_001256012, intron 7 of 42) 66193 NM_005964 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 345.833-4 chr13 31199480 31199885 + 1.33333 NA promoter-TSS (NM_194318) promoter-TSS (NM_194318) -293 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 277.333-14 chr13 113950870 113951361 + 1.33333 NA Intergenic Intergenic -22124 NR_047495 100861555 Hs.353773 NR_047495 ENSG00000260910 LINC00565 - long intergenic non-protein coding RNA 565 ncRNA 229.333-17 chr16 2957160 2957422 + 1.33333 NA Intergenic AluSz|SINE|Alu -6984 NM_172229 79412 Hs.661128 NM_024507 ENSG00000131650 KREMEN2 KRM2 kringle containing transmembrane protein 2 protein-coding 262.666-4 chr20 60015665 60015937 + 1.33333 NA Intergenic L1MA5A|LINE|L1 19427 NM_021810 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 304.5-9 chr12 3883923 3884359 + 1.33333 NA Intergenic AluY|SINE|Alu -10693 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 182.333-29 chr9 9223477 9223731 + 1.33333 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 365586 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 233.833-3 chr10 114110780 114111013 + 1.33333 NA Intergenic Intergenic 63283 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 244.666 chr1 21196171 21196385 + 1.33333 NA Intergenic AluSq2|SINE|Alu -19381 NM_001198801 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 193-26 chr3 106429322 106429640 + 1.33333 NA Intergenic L2a|LINE|L2 -560080 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 223.833-2 chr1 58543496 58544050 + 1.33333 NA intron (NM_145243, intron 1 of 8) intron (NM_145243, intron 1 of 8) 2953 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 296-12 chr6 41429378 41429859 + 1.33333 NA Intergenic MIR|SINE|MIR -72826 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 266.667-18 chr6 61268463 61268839 + 1.33333 NA Intergenic MSTA|LTR|ERVL-MaLR -305479 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 251.666-6 chr7 41584998 41585198 + 1.33333 NA Intergenic Intergenic -108821 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 286.333-12 chr5 63924729 63925195 + 1.33333 NA Intergenic THE1A|LTR|ERVL-MaLR 37330 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 310-2 chr10 48600668 48600969 + 1.33333 NA intron (NM_001347738, intron 2 of 10) intron (NM_001347738, intron 2 of 10) 4255 NR_144646 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 266-14 chr2 44172090 44172470 + 1.33333 NA intron (NM_177969, intron 1 of 4) intron (NM_177969, intron 1 of 4) 3405 NM_177968 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 249.667-25 chr6 64227087 64227461 + 1.33333 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 420438 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 315.334-9 chr8 85111302 85111776 + 1.16667 NA intron (NM_033402, intron 3 of 18) intron (NM_033402, intron 3 of 18) 4301 NM_033402 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 227.167-27 chr9 24504497 24504903 + 1.16667 NA Intergenic Intergenic 40976 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 183.167-4 chr11 13277230 13277543 + 1.16667 NA promoter-TSS (NR_147785) promoter-TSS (NR_147785) -341 NM_001351810 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 263.833-6 chr20 45337422 45338039 + 1.16667 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 10694 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 350.167-6 chr16 74650944 74651452 + 1.16667 NA intron (NM_001370539, intron 2 of 11) intron (NM_001370539, intron 2 of 11) 15679 NM_001370539 55159 Hs.567525 NM_018124 ENSG00000168411 RFWD3 FANCW|RNF201 ring finger and WD repeat domain 3 protein-coding 279.834-9 chr7 2309801 2310279 + 1.16667 NA intron (NM_013321, intron 1 of 10) intron (NM_013321, intron 1 of 10) 4401 NM_013321 29886 Hs.584900 NM_013321 ENSG00000106266 SNX8 Mvp1 sorting nexin 8 protein-coding 258.501-4 chr8 54937824 54938071 + 1.16667 NA Intergenic Intergenic -164081 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 249.5-17 chr4 53018864 53019144 + 1.16667 NA intron (NM_152540, intron 5 of 8) L1M5|LINE|L1 156687 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 393.5-8 chr2 223798356 223798768 + 1.16667 NA intron (NR_110905, intron 1 of 5) intron (NR_110905, intron 1 of 5) 39020 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 296.5 chr1 95238541 95238855 + 1.16667 NA intron (NM_001199682, intron 1 of 3) intron (NM_001199682, intron 1 of 3) 4488 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 382.834-2 chr3 111968078 111968516 + 1.16667 NA intron (NM_001134437, intron 15 of 17) intron (NM_001134437, intron 15 of 17) -10729 NM_001272069 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 273-2 chr10 52694647 52695108 + 1.16667 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 60527 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 389-14 chr8 131956664 131957176 + 1.16667 NA intron (NR_136616, intron 7 of 23) intron (NR_136616, intron 7 of 23) 40147 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 251.167-20 chr8 41746775 41747133 + 1.16667 NA intron (NM_020475, intron 2 of 41) intron (NM_020475, intron 2 of 41) 50668 NM_020477 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 217.5-5 chr12 20544710 20545024 + 1.16667 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -26997 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 417.167-8 chr7 22416312 22417026 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -59515 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 170.334-6 chr4 172659101 172659364 + 1.16667 NA intron (NR_125894, intron 2 of 2) L1MA4|LINE|L1 29685 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 178-24 chr22 28333725 28333933 + 1.16667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -126040 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 207.001 chr7 118334910 118335125 + 1.16667 NA Intergenic Intergenic 110313 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 442.834-3 chr3 122257818 122258239 + 1.16667 NA intron (NM_001178065, intron 3 of 6) intron (NM_001178065, intron 3 of 6) -67220 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 252-30 chr7 7588322 7588601 + 1.16667 NA intron (NM_001370078, intron 5 of 8) intron (NM_001370078, intron 5 of 8) 20435 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 621.001 chr13 31909846 31910546 + 1.16667 NA intron (NR_027062, intron 1 of 3) intron (NR_027062, intron 1 of 3) 63413 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 202 chr1 17494385 17494631 + 1.16667 NA Intergenic Intergenic -45190 NR_137287 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 283.334-8 chr2 109388113 109388650 + 1.16667 NA intron (NM_001099289, intron 3 of 9) intron (NM_001099289, intron 3 of 9) -74756 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 163.667-53 chr7 43471925 43472283 + 1.16667 NA intron (NM_001287059, intron 14 of 27) intron (NM_001287059, intron 14 of 27) 50438 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 447.667-11 chr8 120403809 120404338 + 1.16667 NA intron (NM_014078, intron 6 of 6) intron (NM_014078, intron 6 of 6) 41077 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 327.5-14 chr2 226141861 226142211 + 1.16667 NA promoter-TSS (NR_046102) promoter-TSS (NR_046102) -758 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 203.5-24 chr20 861823 862135 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR 17336 NM_031424 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 307.167-4 chr10 56234938 56235226 + 1.16667 NA Intergenic Intergenic 126177 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 223-16 chr19 38226328 38226736 + 1.16667 NA intron (NM_001363579, intron 1 of 11) (AC)n|Simple_repeat|Simple_repeat -2282 NM_004647 8193 Hs.631576 NM_004647 ENSG00000011332 DPF1 BAF45b|NEUD4|neuro-d4 double PHD fingers 1 protein-coding 229.667-8 chr14 46965852 46966297 + 1.16667 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) -314293 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 235.834-5 chr18 4737373 4737656 + 1.16667 NA Intergenic Intergenic -282207 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 239.5-28 chr3 6016508 6016778 + 1.16667 NA Intergenic Intergenic -766388 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 377-11 chr4 68079474 68080054 + 1.16667 NA intron (NM_207407, intron 3 of 9) intron (NM_207407, intron 3 of 9) -16467 NR_027094 401135 Hs.130270 NM_001014372 SYT14P1 CHR415SYT|SYT14L|SYTDEP synaptotagmin 14 pseudogene 1 pseudo 242.833-11 chr2 99558051 99558458 + 1.16667 NA intron (NM_001025108, intron 21 of 23) L3b|LINE|CR1 -68237 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 275-29 chr7 130959151 130959574 + 1.16667 NA intron (NR_024153, intron 3 of 4) MER20B|DNA|hAT-Charlie 45898 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 312.5-10 chr2 166369302 166369889 + 1.16667 NA intron (NM_001365536, intron 1 of 26) intron (NM_001365536, intron 1 of 26) 6349 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 411.168 chr8 99860825 99861258 + 1.16667 NA intron (NM_017890, intron 57 of 61) intron (NM_017890, intron 57 of 61) 32666 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 169.167-3 chr1 37554469 37555059 + 1.16667 NA promoter-TSS (NM_024700) promoter-TSS (NM_024700) -471 NM_024700 79753 Hs.47232 NM_024700 ENSG00000163877 SNIP1 PML1|PMRED Smad nuclear interacting protein 1 protein-coding 276.501-3 chr7 140742132 140742448 + 1.16667 NA intron (NR_148928, intron 16 of 17) AluSz|SINE|Alu -45213 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 407.334-3 chr14 70639004 70639574 + 1.16667 NA intron (NR_110071, intron 1 of 2) MIR|SINE|MIR 2009 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 244.334 chr1 94229751 94229978 + 1.16667 NA intron (NM_001328665, intron 1 of 21) intron (NM_001328665, intron 1 of 21) 7720 NM_001328667 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 214.834-10 chr5 44934192 44934472 + 1.16667 NA Intergenic L1MA6|LINE|L1 125385 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 240.667-28 chr3 190701139 190701444 + 1.16667 NA Intergenic Intergenic 161403 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 185.334-4 chr2 210043774 210043997 + 1.16667 NA intron (NM_001307976, intron 7 of 13) intron (NM_001307976, intron 7 of 13) 13963 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 252.334-7 chr3 57412362 57412593 + 1.16667 NA intron (NM_001366028, intron 39 of 73) L1MC1|LINE|L1 -119792 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 191-21 chr16 76827431 76827614 + 1.16667 NA Intergenic Intergenic -41414 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 232.667-23 chr22 27531749 27532351 + 1.16667 NA Intergenic Intergenic 221399 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 325-15 chr6 166998766 166999400 + 1.16667 NA promoter-TSS (NM_194429) promoter-TSS (NM_194429) -234 NM_001278690 11116 Hs.487175 NM_007045 ENSG00000213066 FGFR1OP FOP FGFR1 oncogene partner protein-coding 453.668 chr9 76302469 76302894 + 1.16667 NA intron (NM_001190482, intron 27 of 36) L1ME4b|LINE|L1 91745 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 255.333 chr1 59437692 59438112 + 1.16667 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) -77728 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 331.334-2 chr12 40001569 40001973 + 1.16667 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 104310 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 332.334 chr1 90039165 90039574 + 1.16667 NA Intergenic Intergenic 44259 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 247-32 chr8 94262162 94262452 + 1.16667 NA promoter-TSS (NM_181702) promoter-TSS (NM_181702) 12 NM_181702 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 214.333-27 chr3 15388452 15388905 + 1.16667 NA Intergenic LTR8|LTR|ERV1 38866 NM_001330662 131965 Hs.149487 NM_152396 ENSG00000206562 METTL6 - methyltransferase like 6 protein-coding 173.5-15 chr12 61514023 61514269 + 1.16667 NA Intergenic Intergenic 678693 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 222.5-11 chr11 36577769 36578112 + 1.16667 NA 3' UTR (NM_000448, exon 2 of 2) 3' UTR (NM_000448, exon 2 of 2) 9927 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 333.334-3 chr11 12693915 12694237 + 1.16667 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 19655 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 276.834-8 chr8 139841062 139841337 + 1.16667 NA intron (NM_001160372, intron 21 of 22) MLT1D|LTR|ERVL-MaLR -138076 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 307.501-5 chr5 14972885 14973205 + 1.16667 NA Intergenic Intergenic -101267 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 186.667-56 chr7 3835111 3835492 + 1.16667 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -294384 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 163.667-45 chr4 127662996 127663196 + 1.16667 NA intron (NM_015693, intron 3 of 15) intron (NM_015693, intron 3 of 15) 30139 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 174.834-2 chr10 74303646 74304149 + 1.16667 NA intron (NM_001369124, intron 3 of 9) AluSq2|SINE|Alu 127134 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 183.5-13 chr15 60329757 60330031 + 1.16667 NA Intergenic AluSz|SINE|Alu 68092 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 202.667-38 chr7 105071630 105071959 + 1.16667 NA intron (NM_182931, intron 6 of 26) L1MC5a|LINE|L1 57589 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 242.167-22 chr4 88000767 88001115 + 1.16667 NA Intergenic L1PA16|LINE|L1 -6694 NM_000297 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 216.833-21 chr4 176653156 176653504 + 1.16667 NA Intergenic Intergenic 139592 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 319.834-3 chr2 180949006 180949366 + 1.16667 NA Intergenic Intergenic -31199 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 215-23 chr20 5083415 5083784 + 1.16667 NA intron (NM_001330987, intron 3 of 3) L1MD|LINE|L1 29477 NM_001009923 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 233.667-36 chr8 124862967 124863297 + 1.16667 NA Intergenic Intergenic -41074 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 235-24 chr4 158013673 158014024 + 1.16667 NA Intergenic Intergenic -156904 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 392.001-3 chr20 54714790 54715221 + 1.16667 NA Intergenic Intergenic 239412 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 211.667-23 chr2 176508097 176508357 + 1.16667 NA Intergenic Intergenic 92825 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 203.834-6 chr8 10126463 10126677 + 1.16667 NA intron (NM_001199729, intron 2 of 6) AluSz6|SINE|Alu 30919 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 262.334-10 chr2 73085553 73085824 + 1.16667 NA intron (NM_001371272, intron 3 of 5) intron (NM_001371272, intron 3 of 5) -13852 NM_001330401 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 193.833-5 chr12 82777857 82778193 + 1.16667 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 90870 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 234.834-8 chr6 120827035 120827429 + 1.16667 NA Intergenic Intergenic 507248 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 357.5-6 chr15 93957000 93957426 + 1.16667 NA intron (NR_120320, intron 6 of 8) MIRb|SINE|MIR 56512 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 297.834-5 chr3 156616171 156616497 + 1.16667 NA Intergenic MIRb|SINE|MIR -58256 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 296.334 chr1 53166122 53166450 + 1.16667 NA Intergenic MIR|SINE|MIR -23648 NM_006671 6512 Hs.104637 NM_006671 ENSG00000162383 SLC1A7 AAAT|EAAT5 solute carrier family 1 member 7 protein-coding 335.834-10 chr3 154556606 154557050 + 1.16667 NA Intergenic MER39|LTR|ERV1 -126638 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 292.167-16 chr5 88811022 88811415 + 1.16667 NA intron (NM_001131005, intron 3 of 10) L3|LINE|CR1 12709 NM_001193348 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 167.834-4 chr13 113574824 113575071 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -9741 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 226.834-13 chr7 23675610 23675834 + 1.16667 NA Intergenic L1MA5|LINE|L1 -4477 NM_001300932 340277 Hs.592178 NM_199136 ENSG00000188732 FAM221A C7orf46 family with sequence similarity 221 member A protein-coding 176.833-4 chr10 59118408 59118702 + 1.16667 NA Intergenic L1MA8|LINE|L1 57909 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 197.667-27 chr19 1929268 1929444 + 1.16667 NA Intergenic Intergenic -11816 NM_001319 1455 Hs.651905 NM_001319 ENSG00000133275 CSNK1G2 CK1g2 casein kinase 1 gamma 2 protein-coding 231.667-23 chr5 118805706 118806094 + 1.16667 NA Intergenic Intergenic -168686 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 182-2 chr10 9792896 9793306 + 1.16667 NA Intergenic Intergenic -265621 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 198.834-2 chr3 173306054 173306329 + 1.16667 NA Intergenic MIRb|SINE|MIR -89761 NM_001365923 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 168.5-52 chrX 89200135 89200317 + 1.16667 NA Intergenic L1MB7|LINE|L1 453001 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 221.833-18 chr6 27141114 27141439 + 1.16667 NA intron (NM_080593, intron 1 of 1) intron (NM_080593, intron 1 of 1) 1967 NM_003495 8294 Hs.248172 NM_003495 ENSG00000276180 HIST1H4I H4/m|H4FM|H4M histone cluster 1 H4 family member i protein-coding 220.667-19 chr17 39609385 39609584 + 1.16667 NA Intergenic L2c|LINE|L2 -1564 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 281.333-4 chr11 77198406 77198814 + 1.16667 NA exon (NM_001369365, exon 35 of 50) exon (NM_001369365, exon 35 of 50) 70364 NM_000260 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 224-39 chr5 6545601 6545973 + 1.16667 NA Intergenic MER87B|LTR|ERV1 -36349 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 414.667-11 chr8 129267200 129267823 + 1.16667 NA Intergenic Intergenic -26271 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 169.167-35 chrX 53601937 53602230 + 1.16667 NA intron (NM_031407, intron 28 of 83) MER33|DNA|hAT-Charlie -44809 NR_029484 406889 NR_029484 ENSG00000208012 MIRLET7F2 LET7F2|MIRNLET7F2|let-7f-2 microRNA let-7f-2 ncRNA 163.5-35 chr4 74428185 74428371 + 1.16667 NA Intergenic MER90a|LTR|ERV1 -16858 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 235.167-21 chr3 80689762 80689993 + 1.16667 NA Intergenic Intergenic -75020 NR_147143 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 275.667-22 chr6 41669261 41669501 + 1.16667 NA Intergenic L1ME1|LINE|L1 30913 NM_001300806 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 169.5-29 chr3 130725960 130726173 + 1.16667 NA intron (NM_014602, intron 6 of 19) L1ME4a|LINE|L1 20763 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 228-30 chr3 36707662 36708101 + 1.16667 NA Intergenic Intergenic 31980 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 197.5-32 chr6 80270360 80270597 + 1.16667 NA intron (NR_134945, intron 9 of 10) intron (NR_134945, intron 9 of 10) 163807 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 209.834-9 chr7 47827681 47828000 + 1.16667 NA intron (NM_138295, intron 44 of 56) intron (NM_138295, intron 44 of 56) 32549 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 294.5-17 chr20 56077080 56077514 + 1.16667 NA Intergenic Intergenic -71778 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 252.834 chr1 94082016 94082332 + 1.16667 NA intron (NM_000350, intron 7 of 49) intron (NM_000350, intron 7 of 49) 38974 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 228.334-3 chr14 89547852 89548129 + 1.16667 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) -28226 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 288.334-4 chr12 11493424 11493812 + 1.16667 NA Intergenic L1MC4|LINE|L1 -6940 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 224-4 chr1 158999950 159000243 + 1.16667 NA exon (NM_001320010, exon 1 of 1) exon (NM_001320010, exon 1 of 1) 120 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 347-11 chr18 59870554 59871058 + 1.16667 NA Intergenic Intergenic -29190 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 167-9 chr12 13406797 13407010 + 1.16667 NA Intergenic Intergenic -30158 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 211.333-45 chr6 136342106 136342337 + 1.16667 NA TTS (NM_001198619) TTS (NM_001198619) -52370 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 213.334-13 chr8 27682259 27682576 + 1.16667 NA Intergenic L1ME2|LINE|L1 -19260 NR_037417 100500858 NR_037417 ENSG00000284351 MIR3622A mir-3622a microRNA 3622a ncRNA 294.001-3 chr22 28137140 28137449 + 1.16667 NA intron (NM_001145418, intron 6 of 22) LTR78B|LTR|ERV1 -216682 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 300.834-5 chr14 103185492 103185821 + 1.16667 NA Intergenic Intergenic 3372 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 168-2 chr1 74419412 74419675 + 1.16667 NA intron (NM_015978, intron 17 of 24) intron (NM_015978, intron 17 of 24) 63897 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 222.167-40 chr8 81497520 81497857 + 1.16667 NA Intergenic Intergenic -14455 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 184.334-2 chr16 76944538 76944725 + 1.16667 NA Intergenic MamRep1527|LTR|LTR 75695 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 250-22 chr3 43378367 43378752 + 1.16667 NA intron (NM_001204831, intron 11 of 12) intron (NM_001204831, intron 11 of 12) -26597 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 278.667-11 chr14 105481054 105481495 + 1.16667 NA Intergenic Intergenic 4031 NR_073085 1397 Hs.534309 NM_001312 ENSG00000182809 CRIP2 CRIP|CRP2|ESP1 cysteine rich protein 2 protein-coding 364.334 chr20 15361076 15361475 + 1.16667 NA intron (NM_001351663, intron 6 of 17) L1MD2|LINE|L1 164435 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 189.667-41 chr5 71682316 71682491 + 1.16667 NA Intergenic L1MEc|LINE|L1 -36872 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 264.167-15 chr2 95345284 95345615 + 1.16667 NA intron (NM_013434, intron 2 of 8) CpG -1209 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 188.501-2 chr6 53456999 53457337 + 1.16667 NA Intergenic Intergenic 87933 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 275.334-5 chr2 179842276 179842619 + 1.16667 NA intron (NM_001352808, intron 1 of 10) intron (NM_001352808, intron 1 of 10) 18461 NR_031659 100302172 NR_031659 ENSG00000221240 MIR1258 MIRN1258|hsa-mir-1258|mir-1258 microRNA 1258 ncRNA 305.167-7 chr2 152004643 152005163 + 1.16667 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) -30925 NM_001330115 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 179.834-7 chr4 152701666 152701869 + 1.16667 NA Intergenic MER11C|LTR|ERVK -21770 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 177.834 chr12 16322003 16322225 + 1.16667 NA Intergenic Intergenic -25028 NM_145792 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 253.501-3 chr4 21767711 21767945 + 1.16667 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) -70133 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 350.834-4 chr22 38733028 38733476 + 1.16667 NA 3' UTR (NM_004286, exon 12 of 12) 3' UTR (NM_004286, exon 12 of 12) 22214 NM_001199580 25777 Hs.517622 NM_015374 ENSG00000100242 SUN2 UNC84B Sad1 and UNC84 domain containing 2 protein-coding 163.834-2 chr17 45012268 45012408 + 1.16667 NA Intergenic AluJb|SINE|Alu 39294 NM_001128631 79877 Hs.463148 NM_024819 ENSG00000172992 DCAKD - dephospho-CoA kinase domain containing protein-coding 175.667-39 chr3 175766042 175766278 + 1.16667 NA intron (NM_207015, intron 13 of 13) intron (NM_207015, intron 13 of 13) 10173 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 260.667-26 chr2 57052336 57052666 + 1.16667 NA Intergenic Intergenic -855150 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 198.833-7 chr11 80051830 80052165 + 1.16667 NA Intergenic Intergenic -610967 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 286-27 chr8 132051852 132052306 + 1.16667 NA intron (NM_001080399, intron 2 of 13) intron (NM_001080399, intron 2 of 13) 7303 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 240.334-2 chr10 98159323 98159655 + 1.16667 NA intron (NM_001351010, intron 4 of 11) L1MC4a|LINE|L1 24832 NM_001351013 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 404-4 chr17 78711250 78711864 + 1.16667 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) 5475 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 382.334-7 chr8 12866093 12866565 + 1.16667 NA Intergenic Intergenic -54851 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 175.334-5 chr4 145001893 145002101 + 1.16667 NA intron (NM_001256710, intron 4 of 5) intron (NM_001256710, intron 4 of 5) 95385 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 224.667-16 chr14 75281800 75282052 + 1.16667 NA 3' UTR (NM_005252, exon 4 of 4) 3' UTR (NM_005252, exon 4 of 4) 3098 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 443.834 chr11 101862358 101863140 + 1.16667 NA Intergenic Intergenic -52261 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 170.667-12 chr16 62844611 62844802 + 1.16667 NA Intergenic Intergenic -808268 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 165.167-45 chr7 19201578 19201840 + 1.16667 NA Intergenic Intergenic -56288 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 213.667-7 chr14 74485487 74485746 + 1.16667 NA intron (NM_001363688, intron 2 of 3) intron (NM_001363688, intron 2 of 3) -5412 NR_039858 100616211 NR_039858 ENSG00000283944 MIR4709 mir-4709 microRNA 4709 ncRNA 231.167-12 chr14 67173597 67173934 + 1.16667 NA intron (NM_001024218, intron 20 of 21) L1M2a|LINE|L1 -15675 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 226-40 chr8 103676972 103677305 + 1.16667 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -142082 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 184.501-2 chr14 87095656 87095814 + 1.16667 NA Intergenic Intergenic 189957 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 223.667-5 chr1 191955537 191955964 + 1.16667 NA Intergenic MamRep605|LTR?|LTR? -202712 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 175.5-30 chr2 64478572 64478770 + 1.16667 NA Intergenic Intergenic -7682 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 218.333-15 chr2 143146482 143146845 + 1.16667 NA intron (NM_018460, intron 1 of 13) intron (NM_018460, intron 1 of 13) 17244 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 192.167-41 chr9 25111972 25112303 + 1.16667 NA Intergenic LTR37-int|LTR|ERV1 -566240 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 225.834 chr1 234531177 234531387 + 1.16667 NA intron (NR_038426, intron 1 of 2) intron (NR_038426, intron 1 of 2) 497 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 234.667-17 chr2 208416126 208416482 + 1.16667 NA intron (NM_005048, intron 1 of 12) Cheshire|DNA|hAT-Charlie 9474 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 261.501-3 chr7 75528568 75528903 + 1.16667 NA promoter-TSS (NR_028059) promoter-TSS (NR_028059) -612 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 189.167-39 chrX 94277376 94277669 + 1.16667 NA Intergenic Intergenic 603316 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 179.667-40 chr5 128782135 128782719 + 1.16667 NA Intergenic Intergenic -182700 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 222.167-23 chr2 118049497 118049762 + 1.16667 NA Intergenic Intergenic -35559 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 389.001-2 chr8 108445873 108446236 + 1.16667 NA intron (NR_138033, intron 1 of 9) L2a|LINE|L2 2430 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 303.5-6 chr2 118762436 118762862 + 1.16667 NA Intergenic MER131|DNA?|DNA? 85534 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 165.834-7 chr4 119312198 119312394 + 1.16667 NA Intergenic Intergenic -7851 NM_001170330 401152 Hs.173705 NM_001001701 ENSG00000164096 C4orf3 ALN|HCVFTP1 chromosome 4 open reading frame 3 protein-coding 197.667-45 chr7 42392622 42392889 + 1.16667 NA Intergenic Intergenic -155546 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 345-5 chr14 39965806 39966378 + 1.16667 NA Intergenic Intergenic -533592 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 261.834-4 chr19 38073021 38073406 + 1.16667 NA intron (NM_015073, intron 2 of 21) MLT1L|LTR|ERVL-MaLR -89883 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 176.167-34 chr5 171342538 171342812 + 1.16667 NA Intergenic Intergenic -23443 NR_145720 109616973 NR_145720 ENSG00000206909 SNORA70J - small nucleolar RNA, H/ACA box 70J snoRNA 590.166 chr15 72461611 72462324 + 1.16667 NA intron (NR_135678, intron 1 of 3) MIR3|SINE|MIR 12272 NR_135678 105370888 Hs.540241 NR_135678 ENSG00000261423 TMEM202-AS1 - TMEM202 antisense RNA 1 ncRNA 280.834-2 chr2 102966471 102966880 + 1.16667 NA TTS (NR_135530) TTS (NR_135530) 17754 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 352.667-5 chr17 71851519 71851942 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR 174249 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 333.001-2 chr2 162259199 162259581 + 1.16667 NA Intergenic Intergenic -15945 NM_004460 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 321.167-15 chr3 105997843 105998323 + 1.16667 NA Intergenic L1MA2|LINE|L1 -128682 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 192-15 chr15 79173512 79173824 + 1.16667 NA Intergenic Intergenic -36120 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 276.334-6 chr17 65275568 65275949 + 1.16667 NA Intergenic AluSc|SINE|Alu 138388 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 316.333-11 chr19 51856325 51856708 + 1.16667 NA intron (NM_001370456, intron 5 of 5) intron (NM_001370456, intron 5 of 5) 31420 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 336.5-7 chr2 24076006 24076497 + 1.16667 NA promoter-TSS (NM_001291328) promoter-TSS (NM_001291328) 75 NM_016047 51639 Hs.177861 NM_016047 ENSG00000115128 SF3B6 CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a splicing factor 3b subunit 6 protein-coding 171-31 chr2 81155881 81156194 + 1.16667 NA Intergenic L2a|LINE|L2 310909 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 163.334-7 chr4 150668791 150669005 + 1.16667 NA intron (NM_001367550, intron 37 of 56) intron (NM_001367550, intron 37 of 56) 86747 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 240.833-12 chr6 53099523 53100044 + 1.16667 NA 3' UTR (NM_012347, exon 12 of 12) 3' UTR (NM_012347, exon 12 of 12) 28810 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 321-15 chr4 48290332 48290835 + 1.16667 NA Intergenic MER102c|DNA|hAT-Charlie -20745 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 231.167-19 chr20 41329498 41329800 + 1.16667 NA Intergenic Intergenic -11172 NM_001301860 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 189.833-5 chr11 82864075 82864482 + 1.16667 NA intron (NM_005040, intron 1 of 8) intron (NM_005040, intron 1 of 8) 36152 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 286.834 chr12 9278874 9279198 + 1.16667 NA Intergenic Charlie2a|DNA|hAT-Charlie -4621 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 329.167-6 chr12 13750869 13751423 + 1.16667 NA intron (NM_000834, intron 3 of 12) L2c|LINE|L2 229210 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 305-18 chr7 44795928 44796454 + 1.16667 NA promoter-TSS (NM_021130) promoter-TSS (NM_021130) -490 NM_021130 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 173.167-8 chr10 89466658 89466931 + 1.16667 NA intron (NR_120614, intron 2 of 2) intron (NR_120614, intron 2 of 2) 10803 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 283.501-2 chr3 8454971 8455251 + 1.16667 NA intron (NR_033378, intron 3 of 3) GA-rich|Low_complexity|Low_complexity 46547 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 190.333-26 chr20 54144584 54144922 + 1.16667 NA Intergenic MER45R|DNA|hAT-Tip100 29233 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 371.334-2 chr3 119034632 119035182 + 1.16667 NA promoter-TSS (NM_001353318) promoter-TSS (NM_001353318) -61 NM_001353319 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 303.834-2 chr2 198372705 198373100 + 1.16667 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 2195 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 243-14 chr3 126141647 126142088 + 1.16667 NA intron (NR_072979, intron 9 of 20) L1MB1|LINE|L1 -38198 NR_046383 100862662 Hs.633362 NR_046383 ENSG00000246022 ALDH1L1-AS2 - ALDH1L1 antisense RNA 2 ncRNA 205.667-30 chr4 70726746 70726982 + 1.16667 NA intron (NM_014961, intron 1 of 12) intron (NM_014961, intron 1 of 12) 4900 NM_014961 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 328.167-3 chr20 2102331 2102661 + 1.16667 NA intron (NM_080836, intron 1 of 3) CpG 669 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 206-14 chr14 51963894 51964173 + 1.16667 NA intron (NM_001243773, intron 3 of 3) MLT1C|LTR|ERVL-MaLR -25513 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 249.667-15 chr16 82188831 82189059 + 1.16667 NA Intergenic Intergenic -18721 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 191.167-14 chr2 20449417 20449760 + 1.16667 NA TTS (NM_004040) TTS (NM_004040) 2514 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 278.167-8 chr15 98897029 98897451 + 1.16667 NA intron (NM_000875, intron 4 of 20) intron (NM_000875, intron 4 of 20) 108416 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 280.001 chr12 121466118 121466495 + 1.16667 NA intron (NM_001005366, intron 12 of 22) intron (NM_001005366, intron 12 of 22) -21954 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 234.834-9 chr8 22623250 22623459 + 1.16667 NA intron (NR_156436, intron 8 of 9) intron (NR_156436, intron 8 of 9) 18312 NM_001363068 57805 Hs.744848 NM_021174 ENSG00000158941 CCAR2 DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC cell cycle and apoptosis regulator 2 protein-coding 429.333-3 chr17 63827210 63827918 + 1.16667 NA promoter-TSS (NM_001199163) promoter-TSS (NM_001199163) 99 NM_017647 117246 Hs.463785 NM_017647 ENSG00000108592 FTSJ3 EPCS3|SPB1 FtsJ RNA 2'-O-methyltransferase 3 protein-coding 180.334-2 chr13 19958604 19958944 + 1.16667 NA promoter-TSS (NM_001353161) promoter-TSS (NM_001353161) 47 NM_001190964 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 254.5-17 chr19 15994028 15994438 + 1.16667 NA Intergenic Intergenic -21401 NR_026828 126536 Hs.131824 NR_026828 ENSG00000205396 LINC00661 - long intergenic non-protein coding RNA 661 ncRNA 297.667 chr1 41719860 41720319 + 1.16667 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 198833 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 199.5-25 chr2 68358164 68358421 + 1.16667 NA Intergenic Intergenic -6990 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 165.5-26 chr2 75078932 75079117 + 1.16667 NA intron (NM_015727, intron 2 of 3) L3|LINE|CR1 -11788 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 214.5-27 chr4 74310685 74310933 + 1.16667 NA intron (NR_073114, intron 2 of 5) MER2|DNA|TcMar-Tigger 2339 NM_001270992 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 274.834 chr1 107389451 107389815 + 1.16667 NA intron (NM_001113226, intron 2 of 6) intron (NM_001113226, intron 2 of 6) 241564 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 238-30 chr5 100652767 100653201 + 1.16667 NA Intergenic L1M4|LINE|L1 117610 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 282.667-4 chr1 191316557 191317182 + 1.16667 NA Intergenic MIR|SINE|MIR -88371 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 166-22 chr13 97031081 97031337 + 1.16667 NA Intergenic Intergenic -36479 NM_001346197 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 208.5-11 chr14 35649442 35649724 + 1.16667 NA intron (NM_014990, intron 30 of 40) L2c|LINE|L2 113348 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 234.5-40 chr9 104392048 104392440 + 1.16667 NA Intergenic LTR79|LTR|ERVL -112019 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 247.5-35 chr4 65005656 65005980 + 1.16667 NA Intergenic MER70B|LTR|ERVL -1318 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 176.833-32 chr5 44168784 44169058 + 1.16667 NA Intergenic L1PA15|LINE|L1 -219811 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 163.667-13 chr12 39958425 39958599 + 1.16667 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 147569 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 171.5-44 chr8 49937545 49937734 + 1.16667 NA intron (NR_135798, intron 1 of 15) L1MC5a|LINE|L1 26232 NM_001321777 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 386.834 chr3 37967437 37967969 + 1.16667 NA intron (NM_001008392, intron 4 of 7) intron (NM_001008392, intron 4 of 7) -1701 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 250.834 chr1 1371818 1372206 + 1.16667 NA Intergenic Intergenic 3195 NM_001127229 54998 Hs.632515 NM_017900 ENSG00000175756 AURKAIP1 AIP|AKIP|MRP-S38 aurora kinase A interacting protein 1 protein-coding 321.667-2 chr14 38613643 38614190 + 1.16667 NA Intergenic Intergenic -268680 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 224.167-15 chr18 13770993 13771431 + 1.16667 NA Intergenic L1PA15|LINE|L1 44539 NM_003799 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 238.334-6 chr14 35406656 35406865 + 1.16667 NA Intergenic Intergenic -2006 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 346.167 chr1 39609596 39610428 + 1.16667 NA Intergenic L2a|LINE|L2 29631 NM_014571 26508 Hs.472566 NM_014571 ENSG00000163909 HEYL HESR3|HEY3|HRT3|bHLHb33 hes related family bHLH transcription factor with YRPW motif like protein-coding 239.5-22 chr2 141587621 141587986 + 1.16667 NA intron (NM_018557, intron 2 of 90) A-rich|Low_complexity|Low_complexity 543898 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 240.167-2 chr1 23034211 23034571 + 1.16667 NA intron (NM_015013, intron 2 of 18) intron (NM_015013, intron 2 of 18) -9914 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 263-4 chr10 72139900 72140245 + 1.16667 NA intron (NM_001369099, intron 6 of 8) intron (NM_001369099, intron 6 of 8) -51040 NM_014767 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 207.667-13 chr14 50613526 50613763 + 1.16667 NA intron (NM_015915, intron 7 of 13) intron (NM_015915, intron 7 of 13) 53619 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 366.834-5 chr8 84148169 84148574 + 1.16667 NA Intergenic Intergenic -34416 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 193.5-48 chr8 65185370 65185627 + 1.16667 NA Intergenic Intergenic -5158 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 380.834-2 chr11 63192059 63192420 + 1.16667 NA intron (NM_199352, intron 4 of 8) L1PA13|LINE|L1 37413 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 214.833-10 chr2 118088080 118088438 + 1.16667 NA promoter-TSS (NM_016133) promoter-TSS (NM_016133) -159 NM_001321331 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 246-18 chr2 165819074 165819496 + 1.16667 NA Intergenic Intergenic -25038 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 483.834-2 chr17 66200219 66201022 + 1.16667 NA Intergenic MIRb|SINE|MIR -8487 NM_001353129 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 231.167-17 chr2 100916586 100916797 + 1.16667 NA intron (NM_002518, intron 2 of 20) L1ME1|LINE|L1 60470 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 434.001-3 chr9 105600011 105600581 + 1.16667 NA intron (NM_001351497, intron 6 of 12) intron (NM_001351497, intron 6 of 12) 42165 NM_001351499 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 243.834-7 chr4 99820382 99820725 + 1.16667 NA intron (NM_001306151, intron 1 of 9) intron (NM_001306151, intron 1 of 9) 3726 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 198.834-3 chr7 1017180 1017732 + 1.16667 NA intron (NR_146964, intron 1 of 4) intron (NR_146964, intron 1 of 4) 5570 NR_029898 442907 NR_029898 ENSG00000199023 MIR339 MIRN339|hsa-mir-339|mir-339 microRNA 339 ncRNA 191.334-3 chr12 79546971 79547170 + 1.16667 NA Intergenic Intergenic 127813 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 306.501-9 chr8 48375473 48375795 + 1.16667 NA Intergenic Intergenic -175933 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 186.667-64 chr8 120976756 120977044 + 1.16667 NA Intergenic Intergenic -164854 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 204.667-30 chr20 31498820 31499103 + 1.16667 NA Intergenic Intergenic 13183 NR_024358 140875 Hs.283478 NR_024358 ENSG00000233354 LINC00028 C20orf93|NCRNA00028|dJ1093G12.6 long intergenic non-protein coding RNA 28 ncRNA 228.167-5 chr10 120311929 120312127 + 1.16667 NA Intergenic Intergenic 43195 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 198.834-4 chrX 44890059 44890241 + 1.16667 NA intron (NR_111960, intron 2 of 27) L1MD1|LINE|L1 16975 NM_001291416 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 221.167-22 chr5 44560332 44560554 + 1.16667 NA Intergenic LTR88b|LTR|Gypsy? -50161 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 229.334-2 chr11 9591009 9591358 + 1.16667 NA Intergenic Intergenic 16496 NM_001143976 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 200.667-14 chr13 102175408 102175687 + 1.16667 NA intron (NM_175929, intron 1 of 4) L1PB4|LINE|L1 -129543 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 215.667-35 chr4 115852669 115852921 + 1.16667 NA Intergenic L1PA14|LINE|L1 -446930 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 285.667-5 chr10 52297659 52298220 + 1.16667 NA 3' UTR (NM_006258, exon 18 of 18) 3' UTR (NM_006258, exon 18 of 18) 16189 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 204.667-39 chr8 118082480 118082838 + 1.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 29160 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 216.334-8 chr9 27140816 27141044 + 1.16667 NA intron (NM_001290078, intron 1 of 20) L1M6|LINE|L1 31789 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 340.167-9 chr7 136933122 136933682 + 1.16667 NA intron (NR_046103, intron 2 of 3) L1MB8|LINE|L1 30235 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 200-7 chr10 118472077 118472340 + 1.16667 NA Intergenic MIR|SINE|MIR 115100 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 214.334 chr1 23496629 23496814 + 1.16667 NA Intergenic Intergenic -12542 NM_001143778 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 237.5-18 chr16 76648296 76648820 + 1.16667 NA intron (NR_110934, intron 2 of 3) intron (NR_110934, intron 2 of 3) 13560 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 198.333-49 chrX 15497853 15498214 + 1.16667 NA Intergenic L2a|LINE|L2 -2774 NM_203281 660 Hs.495731 NM_001721 ENSG00000102010 BMX ETK|PSCTK2|PSCTK3 BMX non-receptor tyrosine kinase protein-coding 209-26 chr4 20685243 20685575 + 1.16667 NA Intergenic Intergenic -10873 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 179.334-8 chr20 44849774 44849949 + 1.16667 NA Intergenic L2b|LINE|L2 -35844 NM_139323 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 175.833-9 chr10 90818009 90818235 + 1.16667 NA intron (NM_019860, intron 1 of 2) MSTD|LTR|ERVL-MaLR 39917 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 328.667-8 chr16 12803552 12804012 + 1.16667 NA 5' UTR (NM_001099455, exon 1 of 3) 5' UTR (NM_001099455, exon 1 of 3) 105 NM_018340 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 204.334-9 chr7 108194381 108194611 + 1.16667 NA intron (NM_001371137, intron 12 of 25) intron (NM_001371137, intron 12 of 25) 48889 NM_001371182 175.5-31 chr20 4546099 4546302 + 1.16667 NA Intergenic MER74A|LTR|ERVL -140256 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 176.5-23 chr3 12983672 12983955 + 1.16667 NA intron (NM_001134382, intron 1 of 13) L2b|LINE|L2 3288 NM_001330619 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 287.667-14 chr2 24348971 24349266 + 1.16667 NA intron (NM_001348182, intron 1 of 38) (ATC)n|Simple_repeat|Simple_repeat 11418 NM_001348181 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 379.5-5 chr2 49931019 49931643 + 1.16667 NA intron (NM_001330097, intron 5 of 5) intron (NM_001330097, intron 5 of 5) 42872 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 277.834 chr4 18882488 18882749 + 1.16667 NA Intergenic L2c|LINE|L2 -860743 NR_158565 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 184.167-3 chr10 68096653 68096850 + 1.16667 NA Intergenic Intergenic -9256 NR_045662 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 260.334 chr1 215524147 215524469 + 1.16667 NA Intergenic Intergenic -42996 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 397.667-6 chr2 19580652 19581157 + 1.16667 NA Intergenic Intergenic -222281 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 418.667-3 chr15 60098159 60098820 + 1.16667 NA Intergenic Intergenic 94178 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 175-49 chr5 171934774 171934977 + 1.16667 NA intron (NM_033644, intron 1 of 12) L1MC4|LINE|L1 71998 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 261.334 chr11 17997167 17997754 + 1.16667 NA intron (NR_104040, intron 5 of 11) L1MB3|LINE|L1 15587 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 186.333-8 chr12 9986688 9986995 + 1.16667 NA Intergenic MER4B-int|LTR|ERV1 12459 NM_016509 51266 Hs.409794 NM_016509 ENSG00000165682 CLEC1B 1810061I13Rik|CLEC2|CLEC2B|PRO1384|QDED721 C-type lectin domain family 1 member B protein-coding 251.333-9 chr11 22762262 22762552 + 1.16667 NA non-coding (NR_147085, exon 9 of 11) non-coding (NR_147085, exon 9 of 11) 66972 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 282-6 chr10 128117192 128117473 + 1.16667 NA intron (NM_001145966, intron 5 of 13) intron (NM_001145966, intron 5 of 13) 9091 NM_001145966 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 222.334-7 chr4 29490278 29490487 + 1.16667 NA Intergenic Intergenic 276090 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 209.167-19 chr2 58918705 58918941 + 1.16667 NA intron (NR_033873, intron 4 of 13) intron (NR_033873, intron 4 of 13) -298885 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 254.167-19 chr3 85012263 85012545 + 1.16667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 49860 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 231.834-3 chr10 97399832 97400064 + 1.16667 NA intron (NM_001145114, intron 2 of 31) intron (NM_001145114, intron 2 of 31) 1392 NM_015179 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 223.834 chr1 224879738 224880003 + 1.16667 NA Intergenic Intergenic -49784 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 197.667-29 chr2 121147914 121148099 + 1.16667 NA Intergenic L1MD1|LINE|L1 137196 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 259-17 chr14 64298891 64299195 + 1.16667 NA intron (NM_001291712, intron 4 of 13) intron (NM_001291712, intron 4 of 13) -4633 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 223-36 chr4 95451602 95451858 + 1.16667 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 97243 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 290.5-8 chr15 90219548 90220156 + 1.16667 NA exon (NM_020210, exon 5 of 15) exon (NM_020210, exon 5 of 15) 14089 NM_006384 10519 Hs.715556 NM_006384 ENSG00000185043 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 protein-coding 216.333 chr1 26273365 26273733 + 1.16667 NA intron (NM_022778, intron 11 of 13) Charlie19a|DNA|hAT-Charlie 4270 NM_001281518 64793 Hs.63795 NM_022778 ENSG00000130695 CEP85 CCDC21 centrosomal protein 85 protein-coding 350.667-4 chr13 113821260 113821743 + 1.16667 NA intron (NM_000820, intron 14 of 14) intron (NM_000820, intron 14 of 14) 5891 NR_044995 650669 Hs.369201 NM_001039799 GAS6-AS1 - GAS6 antisense RNA 1 ncRNA 202.167-39 chr9 99951839 99952037 + 1.16667 NA intron (NM_017919, intron 4 of 7) L4_A_Mam|LINE|RTE-X 45284 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 222.667-26 chr22 50206754 50207051 + 1.16667 NA intron (NM_031454, intron 2 of 8) intron (NM_031454, intron 2 of 8) 5891 NM_031454 83642 Hs.365405 NM_031454 ENSG00000073169 SELENOO SELO selenoprotein O protein-coding 173.667-43 chr6 132612107 132612385 + 1.16667 NA Intergenic L2a|LINE|L2 -2944 NR_028511 9288 Hs.730091 NR_028511 ENSG00000179073 TAAR3P GPR57|GPR58|TAAR2|TAAR3 trace amine associated receptor 3, pseudogene pseudo 360.5-8 chr4 53687716 53688593 + 1.16667 NA Intergenic MIRb|SINE|MIR -7747 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 228.667-53 chr9 104863329 104863621 + 1.16667 NA intron (NM_005502, intron 5 of 49) intron (NM_005502, intron 5 of 49) 64680 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 394.001-6 chr2 32529784 32530168 + 1.16667 NA intron (NM_016252, intron 60 of 73) intron (NM_016252, intron 60 of 73) -2177 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 287.334-7 chr20 45113730 45114109 + 1.16667 NA intron (NM_145652, intron 1 of 3) LTR57|LTR|ERVL 1255 NM_145652 149708 Hs.375031 NM_145652 ENSG00000175121 WFDC5 PRG5|WAP1|dJ211D12.5 WAP four-disulfide core domain 5 protein-coding 354.001-2 chr19 12803119 12803550 + 1.16667 NA Intergenic Intergenic -1534 NM_005809 7001 Hs.432121 NM_005809 ENSG00000167815 PRDX2 HEL-S-2a|NKEF-B|NKEFB|PRP|PRX2|PRXII|PTX1|TDPX1|TPX1|TSA peroxiredoxin 2 protein-coding 238.334-16 chr4 55382662 55383091 + 1.16667 NA intron (NR_037969, intron 1 of 3) MER45R|DNA|hAT-Tip100 2704 NR_037969 100506462 Hs.718667 NR_037969 ENSG00000249700 SRD5A3-AS1 - SRD5A3 antisense RNA 1 ncRNA 229-23 chr4 121371850 121372237 + 1.16667 NA intron (NM_198179, intron 1 of 5) LTR75B|LTR|ERVL 8975 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 173.5-8 chr10 23028380 23028634 + 1.16667 NA intron (NM_001282745, intron 16 of 18) L1MD2|LINE|L1 -67072 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 248.5-30 chr5 27556766 27557105 + 1.16667 NA Intergenic L1MD|LINE|L1 84643 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 216.5-11 chr11 113994283 113994562 + 1.16667 NA Intergenic Intergenic 16922 NM_001161772 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 176-4 chr1 189427067 189427456 + 1.16667 NA Intergenic L1M4|LINE|L1 1048749 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 211.5-18 chr15 38705922 38706185 + 1.16667 NA Intergenic Intergenic 9455 NR_160786 281.834 chr1 8573137 8573500 + 1.16667 NA intron (NM_001042681, intron 4 of 22) L1ME3C|LINE|L1 -78405 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 197.834-7 chr13 31079363 31079739 + 1.16667 NA Intergenic Intergenic 82353 NM_006644 10808 Hs.743267 NM_006644 ENSG00000120694 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock protein family H (Hsp110) member 1 protein-coding 282.167-17 chr7 20108321 20108834 + 1.16667 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 31849 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 327.167-5 chr14 68979225 68979557 + 1.16667 NA promoter-TSS (NR_073422) promoter-TSS (NR_073422) -25 NM_001130004 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 208-20 chr18 23887448 23887644 + 1.16667 NA intron (NM_001127717, intron 41 of 73) intron (NM_001127717, intron 41 of 73) 14526 NM_001127718 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 304.167-9 chr5 176958856 176959520 + 1.16667 NA intron (NM_001317961, intron 6 of 14) intron (NM_001317961, intron 6 of 14) 47254 NM_016290 51720 Hs.232721 NM_016290 ENSG00000087206 UIMC1 RAP80|X2HRIP110 ubiquitin interaction motif containing 1 protein-coding 256.334-5 chr2 227107352 227107740 + 1.16667 NA intron (NM_000092, intron 12 of 47) L2b|LINE|L2 57013 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 305.833-14 chr6 116570820 116571573 + 1.16667 NA promoter-TSS (NM_016104) promoter-TSS (NM_016104) -308 NM_001007464 51389 Hs.532164 NM_015952 ENSG00000111832 RWDD1 CGI-24|PTD013 RWD domain containing 1 protein-coding 203.667-32 chr4 47682934 47683480 + 1.16667 NA intron (NM_006587, intron 7 of 21) intron (NM_006587, intron 7 of 21) 30538 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 573.667-2 chr4 105473478 105474566 + 1.16667 NA promoter-TSS (NM_176867) promoter-TSS (NM_176867) 40 NM_176869 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 301.167-2 chr10 63032819 63033331 + 1.16667 NA Intergenic HAL1|LINE|L1 -100172 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 293.667-12 chr2 49153587 49153922 + 1.16667 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 761 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 268-25 chr20 63864394 63864820 + 1.16667 NA promoter-TSS (NM_199359) promoter-TSS (NM_199359) -621 NM_001243895 7165 Hs.473296 NM_003288 ENSG00000101150 TPD52L2 D54|TPD54 TPD52 like 2 protein-coding 237.5-14 chr14 67695522 67695848 + 1.16667 NA promoter-TSS (NM_001252650) promoter-TSS (NM_001252650) 79 NM_001252650 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 protein-coding 217.334-3 chr11 19556353 19556572 + 1.16667 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -18848 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 276.834-4 chr2 60946297 60946584 + 1.16667 NA intron (NM_144709, intron 16 of 17) intron (NM_144709, intron 16 of 17) 64866 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 271.334-4 chr14 65832975 65833391 + 1.16667 NA Intergenic Intergenic 362081 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 175-23 chr19 39110241 39110483 + 1.16667 NA 3' UTR (NM_001004318, exon 13 of 13) 3' UTR (NM_001004318, exon 13 of 13) -15424 NM_001014831 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 269.5-19 chr4 181844824 181845240 + 1.16667 NA Intergenic UCON20|Unknown|Unknown -15059 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 303.501 chr11 45951948 45952380 + 1.16667 NA intron (NR_147890, intron 10 of 18) Charlie25|DNA|hAT-Charlie 29508 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 166.5-37 chr6 123280672 123281022 + 1.16667 NA intron (NM_006073, intron 24 of 40) L2c|LINE|L2 -158757 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 284.833-17 chr8 138968955 138969271 + 1.16667 NA Intergenic AluY|SINE|Alu -55072 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 236.334-7 chr18 39736935 39737158 + 1.16667 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) 14949 NR_024391 647946 Hs.649350 NR_024391 ENSG00000267374 MIR924HG LINC00669 MIR924 host gene ncRNA 175.5-5 chr1 189810091 189810243 + 1.16667 NA Intergenic L1M4a2|LINE|L1 665843 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 169.167-9 chr13 105170392 105170794 + 1.16667 NA Intergenic Intergenic -295274 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 239.501-3 chr2 50616014 50616246 + 1.16667 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 80132 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 197.333-18 chr2 199399822 199400166 + 1.16667 NA intron (NR_134967, intron 3 of 4) MIRb|SINE|MIR 57945 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 195-48 chr8 138012710 138012926 + 1.16667 NA intron (NR_161374, intron 2 of 7) L1MB5|LINE|L1 70727 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 293.501 chr6 159028107 159028466 + 1.16667 NA Intergenic Intergenic 14067 NM_001278733 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 323-17 chr22 30106957 30107291 + 1.16667 NA intron (NM_001329457, intron 6 of 11) L2b|LINE|L2 26660 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 288.167-24 chrX 41724480 41724816 + 1.16667 NA intron (NM_080817, intron 1 of 2) intron (NM_080817, intron 1 of 2) 467 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 216-12 chr14 53508937 53509208 + 1.16667 NA Intergenic Intergenic 355718 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 327.5-20 chr6 38507366 38508014 + 1.16667 NA intron (NM_001172418, intron 5 of 10) L2a|LINE|L2 26094 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 321.501-5 chr3 149373040 149373373 + 1.16667 NA intron (NM_014220, intron 3 of 4) L2b|LINE|L2 4443 NM_014220 4071 Hs.351316 NM_014220 ENSG00000169908 TM4SF1 H-L6|L6|M3S1|TAAL6 transmembrane 4 L six family member 1 protein-coding 235.834-9 chr5 39149136 39149357 + 1.16667 NA intron (NM_001243093, intron 3 of 18) intron (NM_001243093, intron 3 of 18) 70317 NM_001349333 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 276.5-2 chr11 120400486 120400927 + 1.16667 NA intron (NM_001301084, intron 1 of 40) intron (NM_001301084, intron 1 of 40) 15379 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 340.167-3 chr15 75332492 75332910 + 1.16667 NA Intergenic AluSz6|SINE|Alu -3362 NM_001321846 54939 Hs.351327 NM_017828 ENSG00000140365 COMMD4 - COMM domain containing 4 protein-coding 362-18 chr7 134818921 134819416 + 1.16667 NA intron (NM_033157, intron 1 of 14) intron (NM_033157, intron 1 of 14) 39534 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 267.167-11 chr6 41134164 41134542 + 1.16667 NA intron (NR_026938, intron 18 of 22) intron (NR_026938, intron 18 of 22) 19996 NM_001271807 340205 Hs.117331 NM_178174 ENSG00000161911 TREML1 GLTL1825|PRO3438|TLT-1|TLT1|dJ238O23.3 triggering receptor expressed on myeloid cells like 1 protein-coding 209.334 chr1 181567410 181567614 + 1.16667 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 83995 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 222.667-8 chr11 66827295 66827647 + 1.16667 NA intron (NM_024650, intron 13 of 16) intron (NM_024650, intron 13 of 16) -15970 NM_001032279 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 238.5-9 chr12 18913949 18914304 + 1.16667 NA Intergenic Intergenic 176007 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 214.5-9 chr13 26850053 26850383 + 1.16667 NA Intergenic Intergenic -89432 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 180-13 chr11 70000220 70000400 + 1.16667 NA Intergenic L4_A_Mam|LINE|RTE-X 63614 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 349-13 chr4 63694207 63694685 + 1.16667 NA Intergenic Intergenic 715004 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 171-27 chr2 5835126 5835298 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -22616 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 172.167-17 chr4 3845370 3845593 + 1.16667 NA Intergenic L1MDa|LINE|L1 79096 NM_000683 152 Hs.123022 NM_000683 ENSG00000184160 ADRA2C ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR adrenoceptor alpha 2C protein-coding 307.834-13 chr8 136905699 136906075 + 1.16667 NA Intergenic Intergenic 375089 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 196.667-16 chr15 50622559 50622774 + 1.16667 NA intron (NR_149154, intron 12 of 37) AluSx|SINE|Alu 64131 NR_149154 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 470.834-2 chr1 220280633 220281200 + 1.16667 NA Intergenic L2c|LINE|L2 -8463 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 237.167-19 chr5 126108989 126109280 + 1.16667 NA Intergenic Intergenic -70443 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 195.834-4 chr16 21168600 21168952 + 1.16667 NA intron (NR_125971, intron 3 of 6) (TAATTA)n|Simple_repeat|Simple_repeat -9335 NM_017539 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 166-11 chr10 90907286 90907466 + 1.16667 NA 3' UTR (NM_001104546, exon 14 of 14) 3' UTR (NM_001104546, exon 14 of 14) 13899 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 165-52 chr8 97170776 97171070 + 1.16667 NA intron (NR_125390, intron 2 of 2) MER77|LTR|ERVL 107005 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 184.667-14 chr12 115207416 115207595 + 1.16667 NA Intergenic Intergenic -523330 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 224-30 chr22 33766550 33766799 + 1.16667 NA intron (NM_001362953, intron 1 of 14) AluSq2|SINE|Alu 41688 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 171.667-24 chr19 699880 700153 + 1.16667 NA Intergenic AluSx1|SINE|Alu -4564 NM_214710 400668 Hs.245146 NM_214710 ENSG00000185198 PRSS57 NSP4|PRSSL1|UNQ782 serine protease 57 protein-coding 328.334-2 chr12 104815304 104815625 + 1.16667 NA intron (NM_032148, intron 11 of 11) A-rich|Low_complexity|Low_complexity 142826 NM_001352172 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 238.334-8 chr14 65826744 65827050 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR 355795 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 206.667-44 chr6 112777721 112778012 + 1.16667 NA Intergenic Intergenic 430536 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 258.667-10 chr17 50744174 50744664 + 1.16667 NA intron (NM_006107, intron 6 of 10) intron (NM_006107, intron 6 of 10) 23099 NM_001358683 55018 Hs.389460 NM_017928 ENSG00000167117 ANKRD40CL C17orf73|LINC00483 ANKRD40 C-terminal like protein-coding 265-26 chr8 72288659 72288984 + 1.16667 NA Intergenic Intergenic -37187 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 168.5-37 chr5 141067696 141067988 + 1.16667 NA intron (NR_105056, intron 1 of 3) L1MEi|LINE|L1 10189 NR_105056 101926905 Hs.570900 NR_105056 LOC101926905 - uncharacterized LOC101926905 ncRNA 262-20 chr5 9539315 9540001 + 1.16667 NA intron (NM_003966, intron 1 of 22) Tigger4a|DNA|TcMar-Tigger 6417 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 234.334-6 chr3 136004553 136004953 + 1.16667 NA intron (NM_002718, intron 2 of 13) L1ME3E|LINE|L1 -17989 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 225.5-31 chr8 121037995 121038446 + 1.16667 NA Intergenic AluSz6|SINE|Alu -226174 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 229.667-34 chr5 118956972 118957170 + 1.16667 NA intron (NM_173666, intron 1 of 5) intron (NM_173666, intron 1 of 5) -17515 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 190.333-36 chr7 3146982 3147297 + 1.16667 NA intron (NR_126024, intron 3 of 3) intron (NR_126024, intron 3 of 3) 11434 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 216.834-2 chr11 80321007 80321234 + 1.16667 NA Intergenic Intergenic 441683 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 404.167 chr1 111030370 111030933 + 1.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 -66707 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 200.667-24 chr2 23269745 23269982 + 1.16667 NA Intergenic L1MEc|LINE|L1 -115316 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 499.668 chr4 37978415 37978919 + 1.16667 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 18269 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 237.834-6 chr20 41575463 41575683 + 1.16667 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 42804 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 226.334-2 chr10 15986382 15986613 + 1.16667 NA Intergenic MARNA|DNA|TcMar-Mariner -125964 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 262.667-30 chr7 11015807 11016245 + 1.16667 NA intron (NR_033436, intron 4 of 16) intron (NR_033436, intron 4 of 16) 42154 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 186.667-68 chr9 89549295 89549478 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -51413 NM_001371194 228.667-47 chr7 77444909 77445406 + 1.16667 NA Intergenic L2b|LINE|L2 -28808 NM_001350900 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 177.167-23 chr6 138040550 138040861 + 1.16667 NA Intergenic Intergenic 66714 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 238.334-11 chr17 50731843 50732132 + 1.16667 NA intron (NM_006107, intron 1 of 10) LTR47A|LTR|ERVL 12384 NM_016424 51747 Hs.130293 NM_006107 ENSG00000108848 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7 like 3 pre-mRNA splicing factor protein-coding 280.834-6 chr7 99160422 99160851 + 1.16667 NA Intergenic L1MDa|LINE|L1 -16528 NM_001199847 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 278-25 chr6 154802968 154803625 + 1.16667 NA intron (NM_014892, intron 7 of 19) MIRc|SINE|MIR -50064 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 322.501 chr13 45423584 45424231 + 1.16667 NA Intergenic (TATAAATATA)n|Simple_repeat|Simple_repeat -5452 NM_001286806 253512 Hs.591230 NM_001010875 ENSG00000174032 SLC25A30 KMCP1 solute carrier family 25 member 30 protein-coding 242.5-8 chr10 91904525 91904794 + 1.16667 NA Intergenic Intergenic 4827 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 337.834 chr20 31877972 31878488 + 1.16667 NA intron (NR_148014, intron 3 of 18) L1M5|LINE|L1 -1587 NM_001367620 164395 Hs.712915 NM_001008409 ENSG00000131044 TTLL9 C20orf125 tubulin tyrosine ligase like 9 protein-coding 288.167-11 chr16 77213585 77214084 + 1.16667 NA TTS (NM_001348924) TTS (NM_001348924) 14426 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 330.833-6 chr14 51395960 51396728 + 1.16667 NA intron (NR_146549, intron 1 of 3) intron (NR_146549, intron 1 of 3) 791 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 291.001-3 chr8 6900670 6900962 + 1.16667 NA Intergenic Intergenic -22880 NM_005218 1672 Hs.32949 NM_005218 ENSG00000164825 DEFB1 BD1|DEFB-1|DEFB101|HBD1 defensin beta 1 protein-coding 183-42 chr7 38368352 38368545 + 1.16667 NA intron (NR_040085, intron 3 of 3) intron (NR_040085, intron 3 of 3) 26871 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 281.167-21 chr8 111380735 111381125 + 1.16667 NA intron (NR_146282, intron 1 of 3) intron (NR_146282, intron 1 of 3) 4291 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 301.166-3 chr12 23732501 23733032 + 1.16667 NA intron (NM_152989, intron 9 of 17) MIRc|SINE|MIR -148180 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 202.501-2 chrX 150486275 150486449 + 1.16667 NA intron (NM_005491, intron 4 of 6) intron (NM_005491, intron 4 of 6) 40908 NM_005491 10046 Hs.20136 NM_005491 ENSG00000013619 MAMLD1 CG1|CXorf6|F18|HYSP2 mastermind like domain containing 1 protein-coding 421.168-2 chr9 104633006 104633543 + 1.16667 NA Intergenic AluY|SINE|Alu -15070 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 215.834-9 chr3 6066345 6066686 + 1.16667 NA Intergenic Intergenic 738934 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 206.833-2 chr1 197598176 197598550 + 1.16667 NA intron (NR_125340, intron 12 of 19) intron (NR_125340, intron 12 of 19) 177117 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 163.667-57 chr8 125099923 125100201 + 1.16667 NA intron (NM_001349485, intron 1 of 6) L2a|LINE|L2 8202 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 213.334-17 chr9 132406885 132407114 + 1.16667 NA promoter-TSS (NM_007344) promoter-TSS (NM_007344) -148 NM_001205296 7270 Hs.54780 NM_007344 ENSG00000125482 TTF1 TTF-1|TTF-I transcription termination factor 1 protein-coding 179-44 chr8 144502723 144503078 + 1.16667 NA TTS (NM_001329445) TTS (NM_001329445) -1240 NM_005309 2875 Hs.103502 NM_005309 ENSG00000167701 GPT AAT1|ALT1|GPT1 glutamic--pyruvic transaminase protein-coding 269.167-13 chr4 32887659 32888068 + 1.16667 NA Intergenic L2a|LINE|L2 536825 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 211.167-3 chr1 203447066 203447356 + 1.16667 NA Intergenic Intergenic -28595 NM_002725 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 241-10 chr2 98213231 98213594 + 1.16667 NA intron (NR_144297, intron 13 of 18) intron (NR_144297, intron 13 of 18) 63879 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 300.167-14 chr8 100917336 100917750 + 1.16667 NA 3' UTR (NM_001135701, exon 6 of 6) 3' UTR (NM_001135701, exon 6 of 6) 33028 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 296.667-10 chr2 72379258 72379612 + 1.16667 NA intron (NR_135774, intron 17 of 19) intron (NR_135774, intron 17 of 19) -231573 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 238.834-3 chr14 47914566 47914798 + 1.16667 NA Intergenic Intergenic -119668 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 306.167-8 chr7 17695531 17695962 + 1.16667 NA Intergenic MER47A|DNA|TcMar-Tigger -136837 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 197.001-2 chr12 127363583 127363840 + 1.16667 NA Intergenic LTR41C|LTR|ERVL -23639 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 295.834 chr11 18588254 18588596 + 1.16667 NA intron (NM_001040697, intron 1 of 11) intron (NM_001040697, intron 1 of 11) 309 NM_001040697 55293 Hs.407991 NM_018314 ENSG00000151116 UEVLD ATTP|UEV3 UEV and lactate/malate dehyrogenase domains protein-coding 177-14 chr14 53272308 53272567 + 1.16667 NA Intergenic L2a|LINE|L2 119083 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 311-12 chr3 31152568 31153017 + 1.16667 NA Intergenic AluSc|SINE|Alu 8995 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 384-10 chr9 100700715 100701232 + 1.16667 NA Intergenic MIR|SINE|MIR 122894 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 189.334-11 chr5 117430456 117430720 + 1.16667 NA intron (NR_046089, intron 1 of 5) L1ME4b|LINE|L1 15076 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 279.334-3 chr12 2360743 2361164 + 1.16667 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 91177 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 197.667-12 chr11 103443804 103444222 + 1.16667 NA intron (NM_001377, intron 85 of 88) intron (NM_001377, intron 85 of 88) 334587 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 301.334-2 chr12 121096182 121096699 + 1.16667 NA Intergenic Intergenic -36436 NR_033955 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 377.834-2 chr10 58786539 58786899 + 1.16667 NA intron (NM_001080512, intron 4 of 20) intron (NM_001080512, intron 4 of 20) 71704 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 269.334 chr1 28584478 28584809 + 1.16667 NA Intergenic FLAM_C|SINE|Alu -1660 NR_146382 85028 Hs.632377 NR_024127 ENSG00000197989 SNHG12 ASLNC04080|C1orf79|LINC00100|NCRNA00100|PNAS-123 small nucleolar RNA host gene 12 ncRNA 187.5-37 chr7 82687915 82688179 + 1.16667 NA Intergenic Intergenic -244091 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 288.167-16 chr3 97924999 97925485 + 1.16667 NA intron (NM_153605, intron 17 of 21) L1ME3G|LINE|L1 47189 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 233.167-17 chr5 5221752 5222100 + 1.16667 NA intron (NM_139056, intron 10 of 22) intron (NM_139056, intron 10 of 22) 81596 NR_136935 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 283.167-15 chr5 78013362 78013736 + 1.16667 NA intron (NM_003664, intron 26 of 26) intron (NM_003664, intron 26 of 26) 55302 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 215.5-31 chr9 26839145 26839452 + 1.16667 NA Intergenic Intergenic 53504 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 232.334-3 chr13 30301214 30301563 + 1.16667 NA intron (NM_032116, intron 1 of 10) AluSq2|SINE|Alu 5623 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 316.001-3 chr2 82222726 82223019 + 1.16667 NA Intergenic L1MEf|LINE|L1 -633931 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 273.334 chr10 77974510 77974889 + 1.16667 NA TTS (NM_007055) TTS (NM_007055) 47887 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 216.334 chr13 27358579 27358795 + 1.16667 NA Intergenic Intergenic -65932 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 226.334-8 chr6 35552507 35552708 + 1.16667 NA Intergenic MLT1G1|LTR|ERVL-MaLR -39711 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 166-56 chr4 159359190 159359401 + 1.16667 NA 3' UTR (NM_014247, exon 24 of 24) 3' UTR (NM_014247, exon 24 of 24) 91486 NM_001351728 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 228.001 chr11 7696398 7696637 + 1.16667 NA exon (NM_198185, exon 10 of 15) exon (NM_198185, exon 10 of 15) 9960 NM_198185 341277 Hs.532475 NM_198185 ENSG00000183378 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 202.667-28 chr20 58029865 58030147 + 1.16667 NA Intergenic Intergenic 26102 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 244.167-26 chr6 62147407 62147804 + 1.16667 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 138620 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 260-20 chr4 90582387 90582768 + 1.16667 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 347546 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 245.5-3 chr1 217035597 217035980 + 1.16667 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 41204 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 170-35 chr21 23246036 23246218 + 1.16667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 138708 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 312.001 chr10 107016635 107016931 + 1.16667 NA intron (NM_001206569, intron 1 of 25) L1ME3A|LINE|L1 147923 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 183.167-19 chr2 71963136 71963473 + 1.16667 NA Intergenic Intergenic 184558 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 234.833-23 chr5 139273734 139274021 + 1.16667 NA non-coding (NR_003141, exon 1 of 4) non-coding (NR_003141, exon 1 of 4) 125 NR_036536 724102 Hs.268939 NR_003141 SNHG4 NCRNA00059|U19H small nucleolar RNA host gene 4 ncRNA 227.5-21 chr3 31795625 31795933 + 1.16667 NA intron (NM_001174060, intron 3 of 10) intron (NM_001174060, intron 3 of 10) 91566 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 267-22 chr2 72769766 72770231 + 1.16667 NA intron (NR_135774, intron 1 of 19) L1MC4|LINE|L1 56035 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 305.334-2 chr10 32469836 32470164 + 1.16667 NA intron (NR_109827, intron 6 of 8) intron (NR_109827, intron 6 of 8) 23860 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 179.333-15 chr15 68113394 68113597 + 1.16667 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 58919 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 182-21 chr2 62360067 62360280 + 1.16667 NA Intergenic LTR48|LTR|ERV1 144652 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 289.667-21 chr6 62778829 62779183 + 1.16667 NA Intergenic Intergenic -492779 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 207-7 chr10 114939329 114939660 + 1.16667 NA intron (NM_139169, intron 1 of 7) intron (NM_139169, intron 1 of 7) 1299 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 360-17 chr8 80447120 80447738 + 1.16667 NA Intergenic Intergenic -38164 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 262.5-3 chr10 119769686 119770083 + 1.16667 NA intron (NM_014937, intron 2 of 19) MLT2B2|LTR|ERVL 43834 NM_014937 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 276.167-9 chr14 88094290 88094721 + 1.16667 NA Intergenic Intergenic -68193 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 288.667-19 chr8 119606161 119606482 + 1.16667 NA intron (NM_001330600, intron 9 of 25) intron (NM_001330600, intron 9 of 25) -13313 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 298.167-4 chr12 45729284 45729566 + 1.16667 NA promoter-TSS (NM_001347839) promoter-TSS (NM_001347839) -281 NM_152641 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 169.667-55 chr7 27156487 27156705 + 1.16667 NA promoter-TSS (NM_006896) promoter-TSS (NM_006896) 79 NM_006896 3204 Hs.660918 NM_006896 ENSG00000122592 HOXA7 ANTP|HOX1|HOX1.1|HOX1A homeobox A7 protein-coding 438.334 chr1 58878619 58879085 + 1.16667 NA intron (NR_108106, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 93701 NR_108106 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 241-20 chr4 1043382 1043658 + 1.16667 NA Intergenic Intergenic 31056 NM_021923 53834 Hs.193326 NM_021923 ENSG00000127418 FGFRL1 FGFR-5|FGFR5|FHFR fibroblast growth factor receptor like 1 protein-coding 196.334 chr10 91243190 91243655 + 1.16667 NA intron (NM_001256549, intron 3 of 9) intron (NM_001256549, intron 3 of 9) 22759 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 174.667-29 chr21 44914639 44914996 + 1.16667 NA intron (NM_001127491, intron 1 of 15) AluJb|SINE|Alu 6082 NM_001303238 3689 Hs.375957 NM_000211 ENSG00000160255 ITGB2 CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7 integrin subunit beta 2 protein-coding 168.833-2 chr1 44384246 44384655 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -20710 NM_001319956 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 262.334-17 chrX 41173081 41173716 + 1.16667 NA intron (NM_001039591, intron 21 of 44) Tigger9a|DNA|TcMar-Tigger 87953 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 193.167-32 chr8 18301485 18301727 + 1.16667 NA Intergenic L1MA4|LINE|L1 79938 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 407.667-8 chr5 32852721 32853560 + 1.16667 NA Intergenic Intergenic -94303 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 251.5-7 chr13 65554101 65554517 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -311738 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 262.334-12 chr4 115293200 115293539 + 1.16667 NA Intergenic Intergenic -179749 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 234.667-3 chr10 50416521 50416796 + 1.16667 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -168048 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 196.834-3 chr22 19411999 19412449 + 1.16667 NA intron (NM_003325, intron 1 of 24) MLT1G1|LTR|ERVL-MaLR 19509 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 179.667-2 chr10 43496934 43497135 + 1.16667 NA Intergenic Intergenic 59923 NM_001355444 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 307.667-13 chr20 49772352 49772862 + 1.16667 NA Intergenic Intergenic -40106 NM_001260491 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 279.334-9 chr6 51828147 51828405 + 1.16667 NA intron (NM_138694, intron 52 of 66) MIR|SINE|MIR 206406 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 190.834-12 chr7 93622982 93623195 + 1.16667 NA Intergenic Intergenic -48358 NM_001164737 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 197.334 chr1 207489120 207489379 + 1.16667 NA 3' UTR (NM_001877, exon 19 of 19) 3' UTR (NM_001877, exon 19 of 19) -6879 NM_000651 1378 Hs.334019 NM_000573 ENSG00000203710 CR1 C3BR|C4BR|CD35|KN complement C3b/C4b receptor 1 (Knops blood group) protein-coding 315-5 chr18 62710611 62711006 + 1.16667 NA Intergenic Intergenic -4733 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 300-25 chrX 46687368 46687887 + 1.16667 NA intron (NM_001257291, intron 1 of 16) intron (NM_001257291, intron 1 of 16) 71491 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 266.334-4 chr4 121691628 121691895 + 1.16667 NA intron (NM_001154, intron 2 of 12) intron (NM_001154, intron 2 of 12) 5219 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 300.833-10 chr7 27761305 27761850 + 1.16667 NA intron (NM_001206902, intron 3 of 15) L1MC2|LINE|L1 21482 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 284.167-13 chr5 105678528 105678828 + 1.16667 NA Intergenic Intergenic 579204 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 170-25 chr17 45067304 45067541 + 1.16667 NA intron (NM_021079, intron 1 of 11) intron (NM_021079, intron 1 of 11) 6105 NM_021079 4836 Hs.532790 NM_021079 ENSG00000136448 NMT1 NMT N-myristoyltransferase 1 protein-coding 171.667-43 chr4 54082619 54082840 + 1.16667 NA Intergenic Intergenic -17434 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 234.333-32 chr6 56937155 56937632 + 1.16667 NA intron (NM_001144769, intron 2 of 96) L1ME1|LINE|L1 17437 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 238.834-8 chr2 157522437 157522667 + 1.16667 NA Intergenic L1ME2|LINE|L1 75008 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 391.167-2 chr10 11481215 11481914 + 1.16667 NA intron (NM_014688, intron 14 of 14) intron (NM_014688, intron 14 of 14) 50716 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 288.167-10 chr16 48158096 48158498 + 1.16667 NA Intergenic MER39|LTR|ERV1 -11527 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 202.334-4 chr15 35182264 35182454 + 1.16667 NA Intergenic Intergenic -54967 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 480.167-3 chr2 231613821 231614459 + 1.16667 NA Intergenic CpG 21276 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 242.833-6 chr11 102613398 102613790 + 1.16667 NA intron (NM_004771, intron 2 of 9) MER5A|DNA|hAT-Charlie 11738 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 233.5-22 chr21 30338382 30338648 + 1.16667 NA promoter-TSS (NM_001077711) promoter-TSS (NM_001077711) -821 NM_001077711 643812 Hs.580881 NM_001077711 ENSG00000206107 KRTAP27-1 - keratin associated protein 27-1 protein-coding 171.5-46 chr8 105716837 105717197 + 1.16667 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 343486 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 270.5-13 chr17 43481488 43481875 + 1.16667 NA Intergenic Intergenic -2184 NM_001322217 1659 Hs.463105 NM_004941 ENSG00000067596 DHX8 DDX8|Dhr2|HRH1|PRP22|PRPF22 DEAH-box helicase 8 protein-coding 296.667-24 chr9 68615268 68615763 + 1.16667 NA Intergenic Intergenic -68913 NR_109769 101927015 Hs.406454 NR_109769 ENSG00000234506 LINC01506 - long intergenic non-protein coding RNA 1506 ncRNA 256.334-6 chr20 38222904 38223263 + 1.16667 NA intron (NM_001029864, intron 9 of 13) L2b|LINE|L2 -37092 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 232.834-8 chr2 138787304 138787600 + 1.16667 NA Intergenic Intergenic -7062 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 215-43 chr9 28235003 28235310 + 1.16667 NA intron (NM_152570, intron 5 of 6) L1M1|LINE|L1 484149 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 217.834-2 chr17 48951395 48951731 + 1.16667 NA Intergenic AluSq|SINE|Alu -6721 NM_001317192 11267 Hs.127249 NM_007241 ENSG00000159210 SNF8 Dot3|EAP30|VPS22 SNF8 subunit of ESCRT-II protein-coding 183.833-20 chr5 30996826 30997066 + 1.16667 NA Intergenic Intergenic -196740 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 209.334-5 chr3 142012288 142012547 + 1.16667 NA intron (NM_001178139, intron 3 of 12) L1ME3Cz|LINE|L1 -12030 NM_001178140 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 272-12 chr12 53467831 53468290 + 1.16667 NA intron (NM_001128912, intron 12 of 14) intron (NM_001128912, intron 12 of 14) 3592 NR_109828 102157401 NR_109828 ENSG00000282977 PCBP2-OT1 TUC.338|TUC338|uc.338 PCBP2 overlapping transcript 1 ncRNA 230.5-34 chr8 122675789 122676172 + 1.16667 NA intron (NR_126348, intron 2 of 3) L1ME4b|LINE|L1 18126 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 248.5-14 chr15 97229468 97230177 + 1.16667 NA Intergenic L1M4a1|LINE|L1 291989 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 227.333-39 chr8 120464719 120465087 + 1.16667 NA intron (NM_022045, intron 10 of 21) L2a|LINE|L2 19484 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 223.167-19 chr6 48674351 48674688 + 1.16667 NA Intergenic Intergenic -605830 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 166.833-26 chr5 11344936 11345188 + 1.16667 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 243855 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 290.167-4 chr12 20363529 20363815 + 1.16667 NA Intergenic Intergenic -5573 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 320.834-7 chr18 5646833 5647269 + 1.16667 NA Intergenic Intergenic -18060 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 281.834-2 chr12 112001234 112001671 + 1.16667 NA intron (NM_138341, intron 2 of 9) FRAM|SINE|Alu 11713 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 265.501-3 chr9 88011323 88011621 + 1.16667 NA Intergenic Intergenic -36692 NM_178432 23552 Hs.522274 NM_012119 ENSG00000156345 CDK20 CCRK|CDCH|P42|PNQALRE cyclin dependent kinase 20 protein-coding 165.667-22 chr15 35184884 35185134 + 1.16667 NA Intergenic MamRTE1|LINE|RTE-BovB -52317 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 190.667-10 chr11 25594011 25594174 + 1.16667 NA Intergenic Intergenic -595031 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 199.167-24 chr5 11801578 11801825 + 1.16667 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 102745 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 255.5-29 chr4 155582653 155582952 + 1.16667 NA Intergenic Intergenic -83908 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 261.667-23 chr7 481801 482131 + 1.16667 NA Intergenic MIR|SINE|MIR 37878 NM_002607 5154 Hs.535898 NM_002607 ENSG00000197461 PDGFA PDGF-A|PDGF1 platelet derived growth factor subunit A protein-coding 212-7 chr10 10031939 10032220 + 1.16667 NA Intergenic L1ME3F|LINE|L1 -26643 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 177-28 chr4 63733226 63733558 + 1.16667 NA Intergenic L1ME1|LINE|L1 676058 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 288.667-16 chr6 61846437 61846767 + 1.16667 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 272472 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 226.5 chr1 6438404 6438633 + 1.16667 NA intron (NM_031475, intron 2 of 12) intron (NM_031475, intron 2 of 12) -8622 NR_036218 100422975 NR_036218 ENSG00000265392 MIR4252 - microRNA 4252 ncRNA 253.167-3 chr12 102880825 102881146 + 1.16667 NA intron (NM_000277, intron 3 of 12) intron (NM_000277, intron 3 of 12) 36259 NM_000277 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 281-9 chr13 81396454 81397103 + 1.16667 NA Intergenic LTR60B|LTR|ERV1 -169795 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 299.167-4 chr1 215936390 215936765 + 1.16667 NA intron (NM_206933, intron 37 of 71) MIRb|SINE|MIR -135888 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 237.667-41 chr8 143980561 143980821 + 1.16667 NA intron (NM_032789, intron 9 of 10) intron (NM_032789, intron 9 of 10) -3946 NM_000445 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 357.334-2 chr4 42883242 42883787 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -9752 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 309.167-8 chr14 68858792 68859312 + 1.16667 NA Intergenic AluSq2|SINE|Alu -62809 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 304.501-4 chr2 220368789 220369169 + 1.16667 NA Intergenic L1MA7|LINE|L1 -462414 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 256.167-8 chr12 121691153 121691425 + 1.16667 NA Intergenic L2a|LINE|L2 -18645 NM_001363685 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 193.667-24 chr16 6328378 6328619 + 1.16667 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 308795 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 268.833-22 chr9 103421438 103421859 + 1.16667 NA Intergenic Intergenic -96615 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 218.501-3 chr8 123372285 123372477 + 1.16667 NA intron (NM_014109, intron 3 of 27) L1ME1|LINE|L1 24066 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 185-34 chr3 61234792 61235109 + 1.16667 NA intron (NM_001320900, intron 1 of 9) intron (NM_001320900, intron 1 of 9) 16502 NM_001354589 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 228.334-7 chr2 88590365 88590653 + 1.16667 NA exon (NM_001313915, exon 6 of 17) exon (NM_001313915, exon 6 of 17) 34420 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 217.167-26 chr7 1225465 1225657 + 1.16667 NA Intergenic CpG -7311 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 372.501-3 chr5 89546795 89547198 + 1.16667 NA Intergenic Intergenic 469724 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 329.5-2 chr11 21511949 21512471 + 1.16667 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -680875 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 199-5 chr1 222792873 222793179 + 1.16667 NA Intergenic Intergenic -22013 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 439.333-2 chr7 45153410 45154008 + 1.16667 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -4082 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 274.834-5 chr5 91551911 91552227 + 1.16667 NA Intergenic Intergenic -168752 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 190.167-6 chr17 31851151 31851347 + 1.16667 NA TTS (NM_001330176) TTS (NM_001330176) 7713 NM_001330176 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 208.334-8 chr5 5342830 5343110 + 1.16667 NA Intergenic L1MC3|LINE|L1 -79707 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 231.5 chr1 90066950 90067276 + 1.16667 NA Intergenic Intergenic 72003 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 270.334-4 chr12 55476981 55477352 + 1.16667 NA Intergenic Intergenic -7028 NM_001005499 390327 Hs.632718 NM_001005499 ENSG00000184954 OR6C70 - olfactory receptor family 6 subfamily C member 70 protein-coding 176.167-29 chr3 94939690 94939972 + 1.16667 NA intron (NR_015400, intron 1 of 7) intron (NR_015400, intron 1 of 7) 1568 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 344.167-11 chrX 46059284 46059713 + 1.16667 NA Intergenic Intergenic -208008 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 218.833-25 chr8 85915178 85915446 + 1.16667 NA Intergenic L1PA10|LINE|L1 -87370 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 179.5-53 chr9 77111772 77112144 + 1.16667 NA Intergenic Intergenic -65487 NM_015186 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 269.667-7 chr15 40519577 40519935 + 1.16667 NA Intergenic L1ME4a|LINE|L1 12794 NR_002208 359821 Hs.678598 NR_002208 MRPL42P5 - mitochondrial ribosomal protein L42 pseudogene 5 pseudo 201.334 chr1 49227532 49227827 + 1.16667 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -29732 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 333.667-11 chr4 74180955 74181400 + 1.16667 NA intron (NM_001351314, intron 5 of 9) intron (NM_001351314, intron 5 of 9) 23059 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 234.667-10 chr13 112064975 112065241 + 1.16667 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -2041 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 255.333-13 chr2 148020491 148020848 + 1.16667 NA promoter-TSS (NM_001190882) promoter-TSS (NM_001190882) 68 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 182-10 chr15 58598360 58598598 + 1.16667 NA intron (NM_001320570, intron 14 of 14) intron (NM_001320570, intron 14 of 14) 95128 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 280.667 chr1 20371044 20371707 + 1.16667 NA intron (NR_033887, intron 10 of 11) intron (NR_033887, intron 10 of 11) 57419 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 276.167-15 chr4 59445166 59445536 + 1.16667 NA Intergenic Intergenic 431778 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 543.334 chr1 202236915 202237718 + 1.16667 NA intron (NM_001017404, intron 4 of 15) intron (NM_001017404, intron 4 of 15) 23161 NM_001017404 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 215.167-15 chr19 38142800 38143024 + 1.16667 NA intron (NM_015073, intron 12 of 21) intron (NM_015073, intron 12 of 21) -20184 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 275.667-10 chr18 11304730 11305063 + 1.16667 NA Intergenic L1M1|LINE|L1 -149582 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 284.501-4 chr6 104771801 104772114 + 1.16667 NA exon (NM_001350559, exon 16 of 22) exon (NM_001350559, exon 16 of 22) 87589 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 266.834-7 chr9 118995402 118995664 + 1.16667 NA Intergenic L4_C_Mam|LINE|RTE-X 315862 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 268-4 chr1 185302356 185302691 + 1.16667 NA intron (NM_006469, intron 8 of 14) intron (NM_006469, intron 8 of 14) 14720 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 223.834-11 chr4 35100054 35100442 + 1.16667 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -830501 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 203.334-5 chr2 58294170 58294481 + 1.16667 NA intron (NR_147010, intron 2 of 2) intron (NR_147010, intron 2 of 2) 18448 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 288.834-7 chr6 104403313 104403689 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 456045 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 193.5-17 chr15 85444114 85444353 + 1.16667 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 63630 NM_006738 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 173.167-31 chr4 76603434 76603785 + 1.16667 NA intron (NM_020859, intron 2 of 10) L1PA6|LINE|L1 28058 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 216.834-16 chrX 46979385 46979686 + 1.16667 NA intron (NM_014735, intron 1 of 10) L1MD|LINE|L1 67114 NM_014735 9767 Hs.371977 NM_014735 ENSG00000102221 JADE3 JADE-3|PHF16 jade family PHD finger 3 protein-coding 286.333-13 chr5 114100159 114100593 + 1.16667 NA Intergenic L1MC4|LINE|L1 -261694 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 199-39 chr5 82009246 82009507 + 1.16667 NA intron (NM_031482, intron 2 of 7) MamRep605|LTR?|LTR? 37353 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 299.167-8 chr11 47257642 47258103 + 1.16667 NA promoter-TSS (NM_005693) promoter-TSS (NM_005693) -124 NM_005693 10062 Hs.438863 NM_005693 ENSG00000025434 NR1H3 LXR-a|LXRA|RLD-1 nuclear receptor subfamily 1 group H member 3 protein-coding 205.834-5 chr13 40222137 40222313 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -1723 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 181.333-22 chr2 199717013 199717449 + 1.16667 NA Intergenic Intergenic 109163 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 327-2 chr1 119967847 119968244 + 1.16667 NA intron (NM_001200001, intron 7 of 21) intron (NM_001200001, intron 7 of 21) -71530 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 354.501 chr20 41036384 41036814 + 1.16667 NA intron (NM_003286, intron 2 of 20) intron (NM_003286, intron 2 of 20) 7777 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 177.334-6 chr18 2080915 2081120 + 1.16667 NA Intergenic Intergenic 490488 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 286-7 chr16 57720028 57720455 + 1.16667 NA intron (NM_032269, intron 8 of 17) MIR|SINE|MIR -15529 NM_005886 10300 Hs.275675 NM_005886 ENSG00000140854 KATNB1 KAT|LIS6 katanin regulatory subunit B1 protein-coding 277.667-25 chr8 76609041 76609347 + 1.16667 NA Intergenic L2a|LINE|L2 -72053 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 308.834-4 chr14 60161993 60162366 + 1.16667 NA intron (NM_001322280, intron 1 of 6) AluJr|SINE|Alu 3219 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 223.167-7 chr16 63326537 63326836 + 1.16667 NA Intergenic L1MC4|LINE|L1 -1290248 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 182.834-2 chr14 49209318 49209508 + 1.16667 NA Intergenic Intergenic 376967 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 230.5-8 chr15 83291894 83292449 + 1.16667 NA Intergenic Intergenic -7507 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 435.501 chr3 96433241 96433714 + 1.16667 NA Intergenic Intergenic 73513 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 269.833-7 chr2 199455501 199455916 + 1.16667 NA intron (NM_001172509, intron 2 of 10) intron (NM_001172509, intron 2 of 10) 2231 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 218.833-23 chr7 14455993 14456369 + 1.16667 NA intron (NM_001350717, intron 20 of 24) Tigger4b|DNA|TcMar-Tigger 385269 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 215.833-18 chr5 35437636 35437929 + 1.16667 NA Intergenic Intergenic -180081 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 193.5-52 chr9 34392128 34392352 + 1.16667 NA intron (NM_032596, intron 1 of 6) AluJo|SINE|Alu 5570 NM_032596 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 210.167-18 chr18 66556959 66557213 + 1.16667 NA intron (NM_001271028, intron 3 of 9) L1M1|LINE|L1 47004 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 229.334-4 chr2 199738311 199738745 + 1.16667 NA Intergenic Intergenic 112645 NM_001350854 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 215.833-5 chr10 77199597 77200003 + 1.16667 NA intron (NM_001271519, intron 3 of 28) intron (NM_001271519, intron 3 of 28) 58969 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 500.834 chr15 51072104 51072791 + 1.16667 NA intron (NM_001311175, intron 1 of 1) L1ME3C|LINE|L1 22459 NM_001311175 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 253-31 chr9 74078705 74079226 + 1.16667 NA Intergenic L1PA17|LINE|L1 -292566 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 371.833-4 chr15 63492556 63493266 + 1.16667 NA Intergenic MIRb|SINE|MIR -11600 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 205.667-31 chr4 95809216 95809528 + 1.16667 NA Intergenic Intergenic -30721 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 268.001-3 chr6 110874454 110874696 + 1.16667 NA promoter-TSS (NM_001634) promoter-TSS (NM_001634) -209 NR_109768 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 233-21 chr3 183449243 183449508 + 1.16667 NA intron (NR_038301, intron 1 of 3) intron (NR_038301, intron 1 of 3) 1724 NR_038301 100505687 Hs.551751 NR_038301 ENSG00000240024 LINC00888 - long intergenic non-protein coding RNA 888 ncRNA 276.167-11 chr15 90259441 90259741 + 1.16667 NA TTS (NR_104604) TTS (NR_104604) -6072 NM_001033088 51335 Hs.135471 NM_016645 ENSG00000182768 NGRN DSC92 neugrin, neurite outgrowth associated protein-coding 171-13 chr12 39663260 39663585 + 1.16667 NA intron (NM_001031748, intron 7 of 12) L1MA4A|LINE|L1 37239 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 347-13 chr2 61787245 61787892 + 1.16667 NA Intergenic AluSq|SINE|Alu 66492 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 395.501-3 chr19 29079154 29079608 + 1.16667 NA Intergenic Intergenic 76826 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 258.334-8 chr9 127024560 127024856 + 1.16667 NA intron (NM_001190729, intron 4 of 17) intron (NM_001190729, intron 4 of 17) 62483 NM_001366401 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 173.667 chr1 215539709 215539969 + 1.16667 NA Intergenic LTR57-int|LTR|ERVL -27465 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 179.5-45 chr7 90371342 90371662 + 1.16667 NA intron (NM_033107, intron 4 of 9) L1MC5|LINE|L1 24786 NM_001042717 85865 Hs.593547 NM_033107 ENSG00000105793 GTPBP10 ObgH2|UG0751c10 GTP binding protein 10 protein-coding 263.167-12 chr3 182337602 182338024 + 1.16667 NA Intergenic L1ME2|LINE|L1 148549 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 230.501 chr14 57195508 57195732 + 1.16667 NA Intergenic Intergenic 73285 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 381.001-2 chr16 81997361 81997905 + 1.16667 NA 3' UTR (NM_145168, exon 3 of 3) 3' UTR (NM_145168, exon 3 of 3) 13837 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 341.667-3 chr14 58225128 58225696 + 1.16667 NA intron (NM_018477, intron 10 of 12) intron (NM_018477, intron 10 of 12) -19393 NR_038123 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 249.667-30 chr8 36967991 36968438 + 1.16667 NA Intergenic L1MA9|LINE|L1 183840 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 353.5-2 chr1 178666022 178666714 + 1.16667 NA Intergenic L1MC4|LINE|L1 -11381 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 216.5-3 chr1 109612176 109612394 + 1.16667 NA intron (NM_005272, intron 1 of 7) intron (NM_005272, intron 1 of 7) 799 NM_005272 2780 Hs.36973 NM_005272 ENSG00000134183 GNAT2 ACHM4|GNATC G protein subunit alpha transducin 2 protein-coding 305-21 chr8 85924597 85925050 + 1.16667 NA Intergenic Intergenic -96881 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 205.001-2 chr20 41971799 41972308 + 1.16667 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat -353676 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 272.833-10 chr20 54294014 54294446 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR 86143 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 426.334 chr10 79374304 79374799 + 1.16667 NA Intergenic Intergenic 27082 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 261.834-8 chrX 86595948 86596339 + 1.16667 NA intron (NM_001139515, intron 3 of 11) L1MB5|LINE|L1 333175 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 206.334 chr1 206868563 206868799 + 1.16667 NA 3' UTR (NM_018724, exon 5 of 5) 3' UTR (NM_018724, exon 5 of 5) 2872 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 165.334 chr12 121709738 121709955 + 1.16667 NA Intergenic L2a|LINE|L2 -2906 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 214.5-13 chr14 86069713 86069957 + 1.16667 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 135157 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 199.834 chr10 120941592 120941832 + 1.16667 NA Intergenic Intergenic 90350 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 240.501 chr10 62051140 62051404 + 1.16667 NA intron (NM_001244638, intron 2 of 6) intron (NM_001244638, intron 2 of 6) 1915 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 298.501-2 chr17 76816288 76816662 + 1.16667 NA Intergenic Intergenic 17431 NR_110837 101928514 Hs.617206 NR_110837 ENSG00000267065 LINC02080 - long intergenic non-protein coding RNA 2080 ncRNA 201.667-38 chr3 58630662 58630849 + 1.16667 NA intron (NR_134853, intron 2 of 3) L2c|LINE|L2 -3145 NM_001282714 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 271.5-22 chr22 44461500 44462064 + 1.16667 NA Intergenic Intergenic 18455 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 220-33 chr8 34564169 34564467 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR -219603 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 307.501-4 chr20 62877597 62877994 + 1.16667 NA TTS (NM_001193369) TTS (NM_001193369) 5108 NR_145839 109623463 NR_145839 SNORA117 - small nucleolar RNA, H/ACA box 117 snoRNA 299-9 chr2 57718756 57719258 + 1.16667 NA Intergenic L1MB3|LINE|L1 -188644 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 229-2 chr12 57010006 57010304 + 1.16667 NA non-coding (NR_033654, exon 8 of 8) non-coding (NR_033654, exon 8 of 8) -3609 NM_014830 9880 Hs.591025 NM_014830 ENSG00000166860 ZBTB39 ZNF922 zinc finger and BTB domain containing 39 protein-coding 195.167-4 chr10 29304220 29304436 + 1.16667 NA intron (NM_032517, intron 3 of 4) intron (NM_032517, intron 3 of 4) 15258 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 223 chr1 74141237 74141575 + 1.16667 NA intron (NM_001105659, intron 4 of 7) intron (NM_001105659, intron 4 of 7) 56770 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 316.834-3 chr3 57755711 57756132 + 1.16667 NA Intergenic Intergenic -1335 NM_001304420 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 400.168 chr14 57776506 57776983 + 1.16667 NA intron (NR_159373, intron 1 of 10) L1PREC2|LINE|L1 88255 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 171.334 chr10 23566832 23567100 + 1.16667 NA Intergenic L1MD1|LINE|L1 127697 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 411.667-7 chr2 232853067 232853701 + 1.16667 NA intron (NM_015575, intron 30 of 30) AluSc|SINE|Alu -15630 NM_001346122 389084 Hs.657509 NM_206895 ENSG00000182600 SNORC ASCL830|C2orf82|UNQ830 secondary ossification center associated regulator of chondrocyte maturation protein-coding 204.334-8 chr6 35895099 35895316 + 1.16667 NA intron (NR_034069, intron 2 of 15) HAL1ME|LINE|L1 25891 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 191.167-27 chr7 92620902 92621121 + 1.16667 NA intron (NM_001259, intron 6 of 7) intron (NM_001259, intron 6 of 7) -30621 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 215.834-7 chr17 72591129 72591748 + 1.16667 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 1366 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 229.834-8 chr7 105760362 105760827 + 1.16667 NA 3' UTR (NM_152749, exon 4 of 4) 3' UTR (NM_152749, exon 4 of 4) -81432 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 301.834-6 chr18 34121319 34121798 + 1.16667 NA intron (NM_001353232, intron 2 of 9) intron (NM_001353232, intron 2 of 9) -72946 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 401.167 chr1 72845142 72845947 + 1.16667 NA Intergenic LTR35|LTR|ERV1 -460626 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 184-8 chr10 51765207 51765556 + 1.16667 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -65786 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 337.334-3 chr10 120755052 120755545 + 1.16667 NA Intergenic L1MEh|LINE|L1 95881 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 214.167-24 chr4 149327817 149328099 + 1.16667 NA Intergenic MIRb|SINE|MIR 173663 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 203.667-10 chr11 13338388 13338704 + 1.16667 NA intron (NM_001351821, intron 3 of 19) intron (NM_001351821, intron 3 of 19) 60819 NM_001351821 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 218.5-21 chr17 53387189 53387535 + 1.16667 NA Intergenic Intergenic 401857 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 337.667-16 chr7 17144439 17145039 + 1.16667 NA Intergenic Intergenic -153913 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 235-22 chr3 182682153 182682502 + 1.16667 NA Intergenic CpG -111177 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 183-38 chr5 92899049 92899231 + 1.16667 NA Intergenic Intergenic 672203 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 263-7 chr15 64434344 64434824 + 1.16667 NA intron (NM_001321924, intron 11 of 12) intron (NM_001321924, intron 11 of 12) 46748 NM_016213 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 332.333-3 chr10 55413269 55413781 + 1.16667 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -185517 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 239.5-27 chr22 28581389 28581698 + 1.16667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 98322 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 324.168 chr17 57242679 57242972 + 1.16667 NA Intergenic Intergenic -13026 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 304.833 chr1 23311750 23312228 + 1.16667 NA intron (NM_001297622, intron 7 of 8).2 intron (NM_001297622, intron 7 of 8).2 -26471 NR_110616 100996511 Hs.99836 NR_110616 LINC01355 - long intergenic non-protein coding RNA 1355 ncRNA 381.168 chr2 146348357 146348706 + 1.16667 NA Intergenic (TACATA)n|Simple_repeat|Simple_repeat -238526 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 195.5-11 chr16 53207993 53208349 + 1.16667 NA promoter-TSS (NM_001352158) promoter-TSS (NM_001352158) 206 NM_001352156 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 308.167-8 chr2 36646455 36646814 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR -48466 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 205.167 chr1 197014107 197014545 + 1.16667 NA Intergenic AluY|SINE|Alu 36789 NM_030787 81494 Hs.282594 NM_030787 ENSG00000134389 CFHR5 CFHL5|CFHR5D|FHR-5|FHR5 complement factor H related 5 protein-coding 227.167 chr1 191720953 191721188 + 1.16667 NA Intergenic Intergenic -437392 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 313.667-15 chr8 86046843 86047528 + 1.16667 NA TTS (NM_033126) TTS (NM_033126) 22483 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 199.667-23 chr2 209422001 209422226 + 1.16667 NA Intergenic Intergenic -1934 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 202.834-3 chr3 46841665 46841992 + 1.16667 NA Intergenic L1M4a2|LINE|L1 -7733 NR_160554 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 169.667-31 chr19 5345997 5346270 + 1.16667 NA Intergenic Intergenic -5321 NM_130855 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase receptor type S protein-coding 303.334-16 chr8 100561948 100562617 + 1.16667 NA Intergenic Arthur1B|DNA|hAT-Tip100 -2523 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 182.5-33 chr5 99822488 99822662 + 1.16667 NA Intergenic Intergenic 288585 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 186-40 chr7 77412942 77413187 + 1.16667 NA intron (NR_146937, intron 1 of 31) intron (NR_146937, intron 1 of 31) -2134 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 211.667-39 chr6 81505318 81505636 + 1.16667 NA Intergenic L1M8|LINE|L1 247204 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 497.167 chr10 106325141 106325647 + 1.16667 NA Intergenic MER5C|DNA|hAT-Charlie 185229 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 189.667-33 chr3 168357423 168357673 + 1.16667 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) 108026 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 295.167-20 chr6 106446038 106446445 + 1.16667 NA intron (NM_001371242, intron 1 of 21) intron (NM_001371242, intron 1 of 21) 11007 NR_134603 105377924 Hs.741855 NR_134603 ENSG00000282408 LOC105377924 - uncharacterized LOC105377924 ncRNA 190.834-4 chr2 29455329 29455495 + 1.16667 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 19965 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 259-26 chr3 66577043 66577415 + 1.16667 NA Intergenic L2a|LINE|L2 -76808 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 281.667-23 chr6 46653987 46654485 + 1.16667 NA intron (NM_001204051, intron 1 of 8) intron (NM_001204051, intron 1 of 8) 1261 NM_001204051 9481 Hs.40510 NM_004277 ENSG00000153291 SLC25A27 UCP4 solute carrier family 25 member 27 protein-coding 307.167-20 chr5 38550162 38550512 + 1.16667 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 6309 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 199.167-10 chr2 10247668 10247938 + 1.16667 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -55101 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 189.5-44 chr9 131747632 131747796 + 1.16667 NA Intergenic AluY|SINE|Alu -7770 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 168.5-15 chr14 72745790 72746076 + 1.16667 NA intron (NM_001280544, intron 3 of 9) intron (NM_001280544, intron 3 of 9) 146716 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 335.001-6 chr6 138056192 138056602 + 1.16667 NA Intergenic L1PB1|LINE|L1 51022 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 368.667-9 chr2 24229783 24230188 + 1.16667 NA intron (NM_001348182, intron 28 of 38) L2a|LINE|L2 54932 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 182.834-7 chr8 82257782 82258249 + 1.16667 NA Intergenic Intergenic -415729 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 219.333-40 chr7 47399624 47400012 + 1.16667 NA intron (NM_022748, intron 15 of 30) L1PB|LINE|L1 64985 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 221.334-13 chr7 47857849 47858057 + 1.16667 NA intron (NM_138295, intron 27 of 56) intron (NM_138295, intron 27 of 56) 62662 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 254.834 chr1 29158315 29158806 + 1.16667 NA intron (NM_005626, intron 3 of 5) AluSx1|SINE|Alu 23340 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 420.168-2 chr11 107692984 107693496 + 1.16667 NA Intergenic AluSc8|SINE|Alu 18816 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 182.5-30 chr5 63126933 63127169 + 1.16667 NA Intergenic Intergenic 548232 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 191-19 chr15 94603592 94603864 + 1.16667 NA Intergenic Intergenic 247798 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 275.5-17 chr22 28570962 28571405 + 1.16667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 108682 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 248.333-24 chr3 143885813 143886310 + 1.16667 NA Intergenic MER20|DNA|hAT-Charlie -37593 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 254.5-28 chr4 146343543 146343976 + 1.16667 NA intron (NM_001317816, intron 4 of 10) intron (NM_001317816, intron 4 of 10) -64824 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 278.334-7 chr22 26430042 26430469 + 1.16667 NA intron (NM_020437, intron 1 of 3) intron (NM_020437, intron 1 of 3) 995 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 193.5-38 chr4 181077425 181077703 + 1.16667 NA intron (NR_033918, intron 2 of 2) intron (NR_033918, intron 2 of 2) 81585 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 260.334-7 chr2 15223771 15224116 + 1.16667 NA intron (NM_015909, intron 47 of 51) intron (NM_015909, intron 47 of 51) 337391 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 171.834-6 chr6 139830550 139830753 + 1.16667 NA intron (NR_038399, intron 1 of 2) intron (NR_038399, intron 1 of 2) -24199 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 325.334-6 chr2 147929062 147929456 + 1.16667 NA 3' UTR (NM_001616, exon 11 of 11) 3' UTR (NM_001616, exon 11 of 11) 84230 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 218-32 chr4 101019083 101019402 + 1.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR 221630 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 355-7 chr20 37177931 37178512 + 1.16667 NA promoter-TSS (NM_001324302) promoter-TSS (NM_001324302) -825 NM_001324304 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 165.667-5 chr1 169113586 169113817 + 1.16667 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 7011 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 472.835 chr4 159486787 159487426 + 1.16667 NA Intergenic Intergenic 219297 NM_001351728 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 239.334-11 chr5 67002217 67002560 + 1.16667 NA intron (NR_111908, intron 1 of 1) L2c|LINE|L2 1766 NR_111908 101928794 Hs.672435 NR_111908 MAST4-AS1 - MAST4 antisense RNA 1 ncRNA 409.834-2 chr7 93253680 93254372 + 1.16667 NA intron (NM_001257998, intron 5 of 28) intron (NM_001257998, intron 5 of 28) 21660 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 366.334-12 chr6 27478845 27479466 + 1.16667 NA Intergenic Intergenic -6037 NM_007149 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 293.667-18 chr4 54962187 54962556 + 1.16667 NA Intergenic MIR|SINE|MIR 163224 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 172.834-4 chr6 45584509 45584735 + 1.16667 NA Intergenic Intergenic 162347 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 238-5 chr10 69568072 69568359 + 1.16667 NA Intergenic Intergenic 5207 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 278.667-24 chr4 135591498 135591927 + 1.16667 NA Intergenic Intergenic 296381 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 271.333-29 chr9 135621656 135622103 + 1.16667 NA Intergenic Intergenic 17661 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 193.5-10 chr12 95098154 95098425 + 1.16667 NA intron (NM_018351, intron 14 of 20) L2b|LINE|L2 -24671 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 328.834-3 chr2 147988636 147989073 + 1.16667 NA intron (NM_001190879, intron 1 of 14) Charlie7|DNA|hAT-Charlie 31883 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 196.167-17 chr16 10953488 10953809 + 1.16667 NA intron (NM_015226, intron 1 of 22) L1M5|LINE|L1 9084 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 231.5-17 chr17 31140617 31140864 + 1.16667 NA intron (NM_001042492, intron 1 of 57) L1MA9|LINE|L1 45763 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 413.001 chr2 151619536 151619957 + 1.16667 NA exon (NM_004543, exon 69 of 149) exon (NM_004543, exon 69 of 149) 114730 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 373.5-6 chr4 25067878 25068475 + 1.16667 NA Intergenic Intergenic -37230 NM_018176 55203 Hs.12488 NM_018176 ENSG00000153012 LGI2 LGIL2 leucine rich repeat LGI family member 2 protein-coding 292.667-13 chr3 63345731 63346248 + 1.16667 NA intron (NM_001130003, intron 2 of 5) AluSz|SINE|Alu 67681 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 396.667-6 chrX 20252390 20253166 + 1.16667 NA intron (NM_004586, intron 1 of 21) L1MD2|LINE|L1 14131 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 183.334-3 chr10 60617138 60617333 + 1.16667 NA intron (NM_001204403, intron 1 of 43) L1ME4a|LINE|L1 -44279 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 233.333-22 chr4 27943313 27943620 + 1.16667 NA Intergenic Intergenic 725987 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 224-50 chr9 32000469 32000745 + 1.16667 NA Intergenic Intergenic -383996 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 183.334-10 chrX 154779508 154779834 + 1.16667 NA intron (NM_001166460, intron 11 of 11) intron (NM_001166460, intron 11 of 11) 4673 NR_002984 677835 Hs.745526 NR_002984 ENSG00000206693 SNORA56 ACA56 small nucleolar RNA, H/ACA box 56 snoRNA 259.833-11 chr2 60724807 60725204 + 1.16667 NA Intergenic L1MD|LINE|L1 -31263 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 334.668 chr5 132322791 132323124 + 1.16667 NA intron (NM_003059, intron 4 of 9) intron (NM_003059, intron 4 of 9) 28563 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 243.834-3 chr12 114449603 114450122 + 1.16667 NA Intergenic Intergenic -41420 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 307-2 chr1 245797569 245797988 + 1.16667 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) -563261 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 300.834-6 chr17 62604116 62604399 + 1.16667 NA intron (NM_001284363, intron 17 of 19) AluSq2|SINE|Alu -23413 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 336.5-8 chr2 198456781 198457257 + 1.16667 NA Intergenic Intergenic -81922 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 214.834-13 chrX 40141064 40141275 + 1.16667 NA intron (NM_001123384, intron 1 of 13) intron (NM_001123384, intron 1 of 13) 36108 NM_001123384 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 205.167-16 chr21 28126359 28126541 + 1.16667 NA intron (NR_126012, intron 5 of 5) L1MA3|LINE|L1 36047 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 188.167-10 chr13 113478063 113478461 + 1.16667 NA intron (NM_001014283, intron 3 of 6) L1ME3B|LINE|L1 12449 NM_001014283 55208 Hs.682987 NM_018185 ENSG00000150401 DCUN1D2 C13orf17 defective in cullin neddylation 1 domain containing 2 protein-coding 222.167-28 chr3 141280651 141280989 + 1.16667 NA intron (NM_001037172, intron 4 of 5) intron (NM_001037172, intron 4 of 5) -43366 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 306.001-5 chr19 34677232 34677611 + 1.16667 NA promoter-TSS (NM_001289189) promoter-TSS (NM_001289189) -218 NR_110322 55900 Hs.436350 NM_018443 ENSG00000089335 ZNF302 HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 zinc finger protein 302 protein-coding 190.167-8 chr19 37545772 37545955 + 1.16667 NA Intergenic L1MB5|LINE|L1 -3086 NR_038248 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 202.167-35 chr7 54840974 54841193 + 1.16667 NA Intergenic Intergenic 81770 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 213.334-4 chr12 20409428 20409710 + 1.16667 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 40324 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 281.667-10 chr17 28045667 28045973 + 1.16667 NA intron (NM_016231, intron 1 of 10) intron (NM_016231, intron 1 of 10) 3143 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 272.5-11 chr16 78318874 78319286 + 1.16667 NA intron (NM_001291997, intron 4 of 7) MLT1D|LTR|ERVL-MaLR 219426 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 213.5-24 chr5 2169337 2169774 + 1.16667 NA Intergenic Intergenic 142646 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 228.333-34 chrX 68822587 68822899 + 1.16667 NA Intergenic Intergenic -6254 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 194.334-2 chr14 28553874 28554241 + 1.16667 NA Intergenic Intergenic 211262 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 187.834-3 chr1 235903451 235903670 + 1.16667 NA Intergenic Intergenic -19847 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 222.5-38 chr9 105296722 105297081 + 1.16667 NA intron (NM_001330731, intron 1 of 15) MIR3|SINE|MIR 52250 NM_080546 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 226-8 chr1 224851641 224851962 + 1.16667 NA Intergenic Intergenic -77853 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 299-12 chr2 124573616 124574018 + 1.16667 NA intron (NM_130773, intron 11 of 23) MIRb|SINE|MIR 548530 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 330.834 chr11 128289873 128290586 + 1.16667 NA Intergenic Intergenic 81463 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 169.167-2 chr1 31808409 31808674 + 1.16667 NA intron (NM_001281988, intron 1 of 14) L1MEd|LINE|L1 7510 NM_001281987 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 198.667-15 chr15 84023863 84024088 + 1.16667 NA intron (NM_207517, intron 26 of 29) AluY|SINE|Alu -56212 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 393.834-2 chr1 227607208 227607675 + 1.16667 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 43885 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 219.334 chr10 121337357 121337604 + 1.16667 NA Intergenic Intergenic 193834 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 240.834-5 chr18 75095516 75095766 + 1.16667 NA Intergenic L1M4b|LINE|L1 109872 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 238.667-3 chr11 88015612 88015817 + 1.16667 NA Intergenic Intergenic 159729 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 372.168 chr3 30408370 30408727 + 1.16667 NA Intergenic THE1C|LTR|ERVL-MaLR -110320 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 301.167-14 chr4 54999212 54999504 + 1.16667 NA Intergenic Intergenic 126237 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 327.834 chr10 132304408 132304896 + 1.16667 NA intron (NM_001318878, intron 1 of 11) intron (NM_001318878, intron 1 of 11) 2570 NM_001318879 282974 Hs.469002 NM_173575 ENSG00000165752 STK32C PKE|YANK3 serine/threonine kinase 32C protein-coding 207.167-21 chr5 164266410 164266622 + 1.16667 NA Intergenic Intergenic 200886 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 181-5 chr11 35517820 35518008 + 1.16667 NA intron (NM_001282675, intron 2 of 12) intron (NM_001282675, intron 2 of 12) 7702 NM_001001991 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 231.167-14 chr15 71574985 71575689 + 1.16667 NA intron (NM_001286429, intron 1 of 11) L4_A_Mam|LINE|RTE-X 28101 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 168-4 chr1 205478167 205478373 + 1.16667 NA Intergenic MIR|SINE|MIR -22184 NR_103783 101669762 Hs.666219 NR_103783 BLACAT1 LINC00912|linc-UBC1|onco-lncRNA-30 bladder cancer associated transcript 1 ncRNA 422.833 chr11 30345992 30346695 + 1.16667 NA Intergenic Intergenic 23239 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 314.667-13 chr7 83838273 83838680 + 1.16667 NA Intergenic Intergenic -189337 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 206.167-24 chr8 83633500 83633818 + 1.16667 NA Intergenic Intergenic 229901 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 258-29 chr6 11535701 11536117 + 1.16667 NA Intergenic L2a|LINE|L2 -1840 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 209.834-5 chr2 198727669 198727947 + 1.16667 NA Intergenic Intergenic -352711 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 245.334-2 chr1 201656425 201656723 + 1.16667 NA intron (NM_020443, intron 1 of 29) intron (NM_020443, intron 1 of 29) 8252 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 256.667-24 chr7 12425236 12425609 + 1.16667 NA Intergenic L1M4|LINE|L1 -21481 NR_144534 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 202.5-40 chr3 153414349 153414578 + 1.16667 NA intron (NR_146713, intron 5 of 6) AluY|SINE|Alu -70032 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 186.667-46 chr4 48755842 48756077 + 1.16667 NA intron (NM_015030, intron 1 of 63) AluJo|SINE|Alu 24340 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 244.001 chr12 12384083 12384319 + 1.16667 NA intron (NM_001300742, intron 2 of 3).2 AluJo|SINE|Alu 27123 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 170.834-4 chr3 45252083 45252303 + 1.16667 NA Intergenic Intergenic -25906 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 193.167-7 chr12 72348176 72348431 + 1.16667 NA intron (NM_013381, intron 2 of 18) intron (NM_013381, intron 2 of 18) -74794 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 259.501 chr1 12024594 12024895 + 1.16667 NA intron (NM_021933, intron 4 of 9) L1MB3|LINE|L1 -4414 NR_106787 102466982 NR_106787 ENSG00000276869 MIR6729 hsa-mir-6729 microRNA 6729 ncRNA 223.167-13 chr22 27924803 27925163 + 1.16667 NA TTS (NR_026962) TTS (NR_026962) -4371 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 239.334 chr11 57569046 57569446 + 1.16667 NA promoter-TSS (NM_198183) promoter-TSS (NM_198183) -916 NM_198183 9246 Hs.425777 NM_004223 ENSG00000156587 UBE2L6 RIG-B|UBCH8 ubiquitin conjugating enzyme E2 L6 protein-coding 233.167-23 chr7 139024498 139024762 + 1.16667 NA Intergenic Intergenic 11412 NM_080660 92092 Hs.512833 NM_080660 ENSG00000146858 ZC3HAV1L C7orf39 zinc finger CCCH-type containing, antiviral 1 like protein-coding 192.334-7 chr9 99222014 99222233 + 1.16667 NA promoter-TSS (NM_033087) promoter-TSS (NM_033087) -159 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - SEC61 translocon beta subunit protein-coding 216.167-18 chr17 77412546 77412952 + 1.16667 NA intron (NM_001293696, intron 1 of 9) L1M5|LINE|L1 7672 NM_001293696 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 205-9 chr17 48696055 48696284 + 1.16667 NA Intergenic AluJb|SINE|Alu 26349 NM_032391 84366 Hs.116467 NM_032391 ENSG00000159182 PRAC1 C17orf92|PRAC PRAC1 small nuclear protein protein-coding 236.5-18 chr2 19121496 19121926 + 1.16667 NA Intergenic Intergenic -94740 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 189.334-9 chr21 10697941 10698217 + 1.16667 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 176565 NM_199259 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 280.833-16 chr6 51183374 51183862 + 1.16667 NA Intergenic Intergenic 364747 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 199.833-25 chr5 95109656 95110008 + 1.16667 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -27966 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 388.501-3 chr5 123119885 123120408 + 1.16667 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -29830 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 423.334-6 chr3 186482419 186482888 + 1.16667 NA intron (NR_033844, intron 2 of 7) L1MA4|LINE|L1 11008 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 200-26 chr2 209959391 209959811 + 1.16667 NA exon (NM_182587, exon 50 of 63) exon (NM_182587, exon 50 of 63) -42964 NM_001278289 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 205.167-29 chrX 91434552 91435061 + 1.16667 NA promoter-TSS (NM_080832) promoter-TSS (NM_080832) -33 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 270.501-2 chr6 121430371 121430615 + 1.16667 NA Intergenic Intergenic -5153 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 244.5-19 chr2 169557485 169557821 + 1.16667 NA intron (NM_024622, intron 5 of 14) intron (NM_024622, intron 5 of 14) 16212 NM_024622 79675 Hs.529276 NM_024622 ENSG00000138399 FASTKD1 - FAST kinase domains 1 protein-coding 171.834-4 chr2 237082982 237083340 + 1.16667 NA Intergenic Intergenic -2280 NM_198189 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 306.833-3 chr12 8797196 8797724 + 1.16667 NA Intergenic LTR16B1|LTR|ERVL -25161 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 318.334-6 chr22 19654066 19654419 + 1.16667 NA Intergenic L1M4|LINE|L1 -60261 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 223.167 chr1 66241388 66241757 + 1.16667 NA intron (NM_001037340, intron 1 of 14) AluSx3|SINE|Alu -90536 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 323.334-4 chr3 100737697 100738088 + 1.16667 NA intron (NM_001007565, intron 6 of 7) AluJb|SINE|Alu 28350 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 225.167-26 chr4 142232205 142232553 + 1.16667 NA intron (NM_001331040, intron 12 of 25) Tigger1|DNA|TcMar-Tigger 595796 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 212.834-6 chr3 133902828 133903048 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -7056 NM_016577 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 235.334-7 chr4 48971625 48971956 + 1.16667 NA Intergenic Intergenic -14485 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 382.667-9 chr7 79117678 79118095 + 1.16667 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 108898 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 204.334-2 chr14 85868920 85869404 + 1.16667 NA Intergenic L1MC1|LINE|L1 -65516 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 232.334-5 chr18 58993767 58994104 + 1.16667 NA Intergenic Intergenic -41744 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 385.667 chr10 76716792 76717246 + 1.16667 NA Intergenic L1MC4|LINE|L1 -171025 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 226-14 chr12 110927999 110928313 + 1.16667 NA Intergenic AluSx|SINE|Alu -7556 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 381.5-6 chr2 125863728 125864321 + 1.16667 NA Intergenic Intergenic 253961 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 226.834-14 chr7 153523116 153523317 + 1.16667 NA Intergenic Intergenic -110982 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 241-23 chr4 160745552 160745900 + 1.16667 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -967942 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 248.167-19 chr4 127526086 127526317 + 1.16667 NA Intergenic Intergenic -106756 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 265.5-31 chr7 119750108 119750472 + 1.16667 NA TTS (NR_131961) TTS (NR_131961) 157085 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 209.5-35 chr8 84935198 84935516 + 1.16667 NA Intergenic Intergenic -171881 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 262.667-25 chr3 61900859 61901441 + 1.16667 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 339579 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 280.333-28 chr8 104732539 104732895 + 1.16667 NA Intergenic Intergenic -143693 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 199.5-37 chr4 157954982 157955164 + 1.16667 NA Intergenic Intergenic -215679 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 265-22 chr5 148831891 148832194 + 1.16667 NA Intergenic Intergenic 5449 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 183.833-19 chr4 65923280 65923620 + 1.16667 NA Intergenic Intergenic -252955 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 217.667-25 chr2 62629221 62629510 + 1.16667 NA Intergenic Intergenic -44513 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 275.167-8 chr12 39515240 39515586 + 1.16667 NA Intergenic L1M1|LINE|L1 -72293 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 207.334-6 chr3 26721230 26721464 + 1.16667 NA Intergenic Intergenic 26790 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 225.334-7 chr6 89372002 89372256 + 1.16667 NA intron (NM_021244, intron 6 of 6) intron (NM_021244, intron 6 of 6) -19407 NM_016021 51465 Hs.163776 NM_016021 ENSG00000198833 UBE2J1 CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p ubiquitin conjugating enzyme E2 J1 protein-coding 181.167-8 chr10 79330348 79330617 + 1.16667 NA Intergenic L1ME2|LINE|L1 -16987 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 229.833-6 chr12 20871001 20871465 + 1.16667 NA intron (NM_019844, intron 8 of 15) L1M1|LINE|L1 48685 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 219.667-34 chr8 79374011 79374374 + 1.16667 NA Intergenic L1M2|LINE|L1 42004 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 296.001-3 chr6 113342992 113343310 + 1.16667 NA Intergenic Intergenic 90296 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 375.834-2 chr13 35630443 35631229 + 1.16667 NA intron (NM_001204197, intron 9 of 17) intron (NM_001204197, intron 9 of 17) -66688 NR_132116 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 173-43 chr9 5853611 5853995 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie -20686 NM_024896 79956 Hs.591078 NM_024896 ENSG00000099219 ERMP1 FXNA|KIAA1815|bA207C16.3 endoplasmic reticulum metallopeptidase 1 protein-coding 179.167-7 chr11 22786287 22786602 + 1.16667 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 42935 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 313.834-2 chr2 54472909 54473399 + 1.16667 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 16827 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 362.667-9 chr7 95723351 95724012 + 1.16667 NA Intergenic Intergenic -48825 NM_001278421 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 267.334-5 chr8 127151542 127151997 + 1.16667 NA Intergenic Intergenic 45858 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 378.5-6 chr20 49696514 49697177 + 1.16667 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 17033 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 245.001-2 chr2 176489654 176489925 + 1.16667 NA Intergenic Intergenic 111263 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 197.334-9 chr7 114215255 114215435 + 1.16667 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 129018 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 232.667-8 chr11 26199002 26199390 + 1.16667 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 10073 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 256.667-7 chr11 72888007 72888470 + 1.16667 NA intron (NM_014824, intron 11 of 19) L2|LINE|L2 73827 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 181-22 chr19 37403124 37403421 + 1.16667 NA Intergenic Intergenic 32173 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 278.667-6 chr10 111084519 111084996 + 1.16667 NA Intergenic Intergenic 7728 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 184-27 chr19 17248818 17249044 + 1.16667 NA TTS (NR_135632) TTS (NR_135632) -3589 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 240.667-15 chr15 73378758 73379206 + 1.16667 NA Intergenic Intergenic -10024 NM_005477 10021 Hs.86941 NM_005477 ENSG00000138622 HCN4 SSS2 hyperpolarization activated cyclic nucleotide gated potassium channel 4 protein-coding 218.667-3 chr11 34075807 34076180 + 1.16667 NA intron (NM_005898, intron 4 of 18) L1MC5|LINE|L1 24262 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 304.667-18 chr7 10939767 10940636 + 1.16667 NA promoter-TSS (NM_002489) promoter-TSS (NM_002489) -48 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 188.834-5 chr16 57446436 57446597 + 1.16667 NA promoter-TSS (NM_020312) promoter-TSS (NM_020312) 869 NM_020313 57019 Hs.4900 NM_020313 ENSG00000005194 CIAPIN1 Anamorsin|CIAE2|DRE2|PRO0915 cytokine induced apoptosis inhibitor 1 protein-coding 281.5-7 chr12 74313430 74313890 + 1.16667 NA Intergenic L1P4|LINE|L1 -21029 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 249.834-7 chr2 61296671 61297067 + 1.16667 NA exon (NM_014709, exon 30 of 80) exon (NM_014709, exon 30 of 80) 119451 NR_152212 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 178.167-8 chr13 105366570 105366911 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -99127 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 379.5 chr1 3749429 3749996 + 1.16667 NA Intergenic Tigger3a|DNA|TcMar-Tigger -2339 NR_033708 57212 Hs.49658 NM_207306 ENSG00000227372 TP73-AS1 KIAA0495|PDAM TP73 antisense RNA 1 ncRNA 244.167-17 chr20 59404302 59404552 + 1.16667 NA Intergenic MIRb|SINE|MIR 103816 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 283.833 chr11 60844690 60845115 + 1.16667 NA intron (NM_024098, intron 1 of 3) L2a|LINE|L2 2789 NM_024098 79080 Hs.4253 NM_024098 ENSG00000110104 CCDC86 - coiled-coil domain containing 86 protein-coding 316.001 chr10 26684833 26685182 + 1.16667 NA Intergenic Intergenic -12417 NM_001321979 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 223.334 chr10 110229685 110229892 + 1.16667 NA intron (NM_001008541, intron 2 of 4) intron (NM_001008541, intron 2 of 4) 3792 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 327.667-6 chr17 8060142 8060709 + 1.16667 NA Intergenic HERVK-int|LTR|ERVK 21366 NM_001039131 247 Hs.111256 NM_001141 ENSG00000179593 ALOX15B 15-LOX-2 arachidonate 15-lipoxygenase type B protein-coding 169.334-6 chr16 73997039 73997291 + 1.16667 NA Intergenic Intergenic 218356 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 260.167 chr1 186868896 186869196 + 1.16667 NA intron (NM_024420, intron 2 of 17) L1MC|LINE|L1 40097 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 194.5-26 chr17 62063408 62063683 + 1.16667 NA intron (NM_005121, intron 1 of 29) intron (NM_005121, intron 1 of 29) 1733 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 316.667-3 chr10 114550635 114551421 + 1.16667 NA intron (NM_001352440, intron 4 of 20) intron (NM_001352440, intron 4 of 20) -24115 NM_001322899 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 323.001-3 chr6 90856270 90856561 + 1.16667 NA Intergenic Intergenic -269343 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 294.167-7 chr2 40786419 40786766 + 1.16667 NA Intergenic Intergenic -274157 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 163.333-17 chr14 31681321 31681597 + 1.16667 NA intron (NR_120408, intron 6 of 9) L1ME2|LINE|L1 -33110 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 219.834-12 chr9 68769180 68769384 + 1.16667 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) -10783 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 211.667-31 chr4 161161823 161162133 + 1.16667 NA Intergenic Charlie2a|DNA|hAT-Charlie -860755 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 163.5-9 chr12 53976483 53976742 + 1.16667 NA 3' UTR (NM_014212, exon 2 of 2) 3' UTR (NM_014212, exon 2 of 2) -1656 NR_047517 100124700 Hs.197076 NR_003716 ENSG00000228630 HOTAIR HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072 HOX transcript antisense RNA ncRNA 239.5-14 chr17 64588129 64588435 + 1.16667 NA intron (NM_022739, intron 5 of 18) intron (NM_022739, intron 5 of 18) 74025 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 330.667-5 chr14 55877381 55877761 + 1.16667 NA Intergenic Intergenic -80897 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 193.167-31 chr8 5745057 5745313 + 1.16667 NA Intergenic Intergenic 661363 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 182.334-2 chr10 118850398 118850719 + 1.16667 NA Intergenic Intergenic -95588 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 259.501-5 chr2 222656124 222656362 + 1.16667 NA promoter-TSS (NM_005687) promoter-TSS (NM_005687) -151 NR_130154 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 258-41 chrX 131790202 131790599 + 1.16667 NA intron (NR_026975, intron 5 of 12) L1M4|LINE|L1 40243 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 233.667-38 chr9 27774268 27774543 + 1.16667 NA Intergenic L2a|LINE|L2 -200539 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 307.834-3 chr10 61835523 61836023 + 1.16667 NA Intergenic Intergenic -65926 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 241.5-8 chr2 44075801 44076059 + 1.16667 NA Intergenic Intergenic -79941 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 214-54 chr9 27545058 27545279 + 1.16667 NA Intergenic L1MEc|LINE|L1 -15354 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 271.333-15 chr2 26340074 26340470 + 1.16667 NA intron (NR_135916, intron 1 of 12) intron (NR_135916, intron 1 of 12) 5539 NM_001321975 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 258.834-3 chr12 66209272 66209659 + 1.16667 NA exon (NM_001142523, exon 2 of 11) exon (NM_001142523, exon 2 of 11) 20251 NM_007199 11213 Hs.369265 NM_007199 ENSG00000090376 IRAK3 ASRT5|IRAKM interleukin 1 receptor associated kinase 3 protein-coding 194.667-41 chr4 23844024 23844244 + 1.16667 NA intron (NM_001330752, intron 3 of 13) intron (NM_001330752, intron 3 of 13) 37158 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 237.833-18 chr8 80467525 80467881 + 1.16667 NA Intergenic MSTB|LTR|ERVL-MaLR -17890 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 199.5-48 chr9 17330266 17330544 + 1.16667 NA intron (NM_001365029, intron 8 of 25) intron (NM_001365029, intron 8 of 25) 195365 NM_001365029 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 298.167-5 chr15 70296251 70296548 + 1.16667 NA Intergenic MER94|DNA|hAT-Blackjack -198482 NM_005078 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 214-2 chr1 93062187 93062653 + 1.16667 NA Intergenic MLT1H1|LTR|ERVL-MaLR -16815 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 169.834-3 chr14 66962548 66962793 + 1.16667 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -226770 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 176.167-32 chr4 174274623 174274864 + 1.16667 NA intron (NM_012180, intron 1 of 5) intron (NM_012180, intron 1 of 5) -9161 NM_001145314 80817 Hs.555989 NM_030633 ENSG00000164118 CEP44 KIAA1712|PS1TP3 centrosomal protein 44 protein-coding 173.167-23 chr22 23315522 23315724 + 1.16667 NA 3' UTR (NM_021574, exon 22 of 22) 3' UTR (NM_021574, exon 22 of 22) -10993 NR_149133 102724679 Hs.517462 NR_149133 ENSG00000236611 LINC02556 - long intergenic non-protein coding RNA 2556 ncRNA 245.167-5 chr12 6570015 6570413 + 1.16667 NA 3' UTR (NM_001363606, exon 40 of 40) 3' UTR (NM_001363606, exon 40 of 40) -1923 NM_001033714 4839 Hs.534334 NM_006170 ENSG00000111641 NOP2 NOL1|NOP120|NSUN1|p120 NOP2 nucleolar protein protein-coding 208.5-17 chr19 49383963 49384215 + 1.16667 NA intron (NR_110729, intron 1 of 2) L1MEg|LINE|L1 3992 NR_110729 101928295 Hs.640180 NR_110729 ENSG00000268686 LOC101928295 - uncharacterized LOC101928295 ncRNA 595.501-2 chr7 120725167 120726001 + 1.16667 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 132560 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 211-41 chr6 56152215 56152558 + 1.16667 NA intron (NR_134849, intron 10 of 29) MLT1D|LTR|ERVL-MaLR -60724 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 225.834-9 chr20 10604837 10605111 + 1.16667 NA intron (NM_001009608, intron 6 of 7) intron (NM_001009608, intron 6 of 7) 44721 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 257.5-19 chr2 134894468 134894758 + 1.16667 NA intron (NR_036549, intron 1 of 4) L1MB7|LINE|L1 23993 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 230.833-16 chr6 13694764 13695137 + 1.16667 NA intron (NM_005493, intron 2 of 13) L1ME1|LINE|L1 16885 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 486.335 chr1 168069651 168070287 + 1.16667 NA intron (NM_001017977, intron 18 of 18) intron (NM_001017977, intron 18 of 18) 66467 NM_001267612 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 372.667-11 chr7 93686082 93686487 + 1.16667 NA Intergenic L1MEc|LINE|L1 -30644 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 205.334 chr1 48876056 48876370 + 1.16667 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -99244 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 245.167-18 chr8 108903309 108903714 + 1.16667 NA Intergenic Intergenic -115917 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 291.5-14 chr14 91997110 91997542 + 1.16667 NA intron (NM_004239, intron 13 of 20) L2b|LINE|L2 42733 NM_001321851 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|ODCD|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 426.334-6 chr7 103347594 103348047 + 1.16667 NA intron (NM_001204453, intron 1 of 4) intron (NM_001204453, intron 1 of 4) 177 NM_002803 5701 Hs.437366 NM_002803 ENSG00000161057 PSMC2 MSS1|Nbla10058|S7 proteasome 26S subunit, ATPase 2 protein-coding 290.334-10 chr4 157112380 157112786 + 1.16667 NA intron (NM_000824, intron 2 of 9) LTR16|LTR|ERVL 36180 NM_001166060 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 166.167-2 chr1 109607580 109608030 + 1.16667 NA intron (NM_005272, intron 4 of 7) MIRb|SINE|MIR 5279 NM_005272 2780 Hs.36973 NM_005272 ENSG00000134183 GNAT2 ACHM4|GNATC G protein subunit alpha transducin 2 protein-coding 352.834 chr1 57651345 57651764 + 1.16667 NA intron (NM_001353980, intron 3 of 5) MIRb|SINE|MIR -209027 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 390.501 chr8 120985987 120986379 + 1.16667 NA Intergenic Intergenic -174137 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 318.167-8 chr2 126299058 126299430 + 1.16667 NA Intergenic MSTB1|LTR|ERVL-MaLR -181259 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 226.5-35 chr6 53673239 53673620 + 1.16667 NA Intergenic Intergenic -7673 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 272.333-5 chr12 13950523 13950917 + 1.16667 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 29636 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 242.167-15 chr2 37141772 37142098 + 1.16667 NA intron (NM_002759, intron 4 of 16) intron (NM_002759, intron 4 of 16) 5887 NM_001135652 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 290.334-11 chr7 44103576 44103939 + 1.16667 NA promoter-TSS (NM_001129) promoter-TSS (NM_001129) -588 NM_001129 165 Hs.439463 NM_001129 ENSG00000106624 AEBP1 ACLP AE binding protein 1 protein-coding 280.167-2 chr11 43576956 43577462 + 1.16667 NA Intergenic Intergenic -4185 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 178.833-18 chr2 27113593 27113791 + 1.16667 NA intron (NM_006569, intron 1 of 5) MIR|SINE|MIR 5435 NM_001166240 10669 Hs.159525 NM_006569 ENSG00000138028 CGREF1 CGR11 cell growth regulator with EF-hand domain 1 protein-coding 226.167-20 chr4 164819954 164820368 + 1.16667 NA Intergenic Intergenic -57017 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 185.5-40 chr7 88218797 88219051 + 1.16667 NA exon (NM_003130, exon 2 of 8) exon (NM_003130, exon 2 of 8) 1160 NM_001256891 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 289.334-10 chr8 103665889 103666378 + 1.16667 NA intron (NM_001348488, intron 3 of 25) MER57B2|LTR|ERV1 -153087 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 231.833-14 chr4 57021869 57022289 + 1.16667 NA intron (NM_001303269, intron 18 of 25) intron (NM_001303269, intron 18 of 25) 43183 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 291.5-10 chr13 104385673 104386034 + 1.16667 NA Intergenic AluJr|SINE|Alu 960653 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 307.667-12 chr2 119272719 119273113 + 1.16667 NA Intergenic FLAM_A|SINE|Alu -23845 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 191-37 chr4 121931891 121932118 + 1.16667 NA intron (NM_001130698, intron 2 of 11) intron (NM_001130698, intron 2 of 11) 1109 NM_003305 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 206.834-12 chr6 61817255 61817453 + 1.16667 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 243224 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 181.5-10 chr12 4234460 4234765 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -39150 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 258.834 chr11 11661798 11662174 + 1.16667 NA Intergenic LTR85a|LTR|Gypsy? -5264 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 281.5-16 chr4 125013092 125013476 + 1.16667 NA Intergenic Intergenic -300552 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 183.333-66 chr9 80062131 80062415 + 1.16667 NA Intergenic Intergenic 87250 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 214.501 chr2 167264337 167264570 + 1.16667 NA Intergenic LTR16A|LTR|ERVL 77081 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 327.167-6 chr4 74684702 74685020 + 1.16667 NA Intergenic L1MB3|LINE|L1 109662 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 273-22 chr4 172515166 172515657 + 1.16667 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 173506 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 346.668 chr8 121227262 121227615 + 1.16667 NA Intergenic Intergenic -411908 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 426.334-5 chr7 18227355 18227886 + 1.16667 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -62472 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 272.667-14 chr14 27368177 27368464 + 1.16667 NA intron (NR_148991, intron 2 of 2) AluSx3|SINE|Alu -244268 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 183.667-42 chr4 73730078 73730253 + 1.16667 NA Intergenic Intergenic -10404 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 210.334 chr1 50765442 50765636 + 1.16667 NA intron (NM_007051, intron 4 of 18) intron (NM_007051, intron 4 of 18) 194728 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 192.5-36 chr4 60524189 60524541 + 1.16667 NA Intergenic Intergenic -398254 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 283.667-17 chr7 111182999 111183409 + 1.16667 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 92077 NM_018334 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 277.167-5 chr16 55504357 55504791 + 1.16667 NA intron (NM_001127891, intron 12 of 12) intron (NM_001127891, intron 12 of 12) -4498 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 261.001-2 chr4 112675888 112676202 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -25994 NR_146092 109864269 Hs.642978 NR_146092 ENSG00000249532 MIR302CHG - miR-302/367 cluster host gene ncRNA 225.834-2 chr11 20263093 20263497 + 1.16667 NA Intergenic AluJb|SINE|Alu -100390 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 269.667-28 chr9 35227458 35227867 + 1.16667 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 65653 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 184.667-9 chr11 82594157 82594361 + 1.16667 NA Intergenic Intergenic 139605 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 329.001-2 chr6 37922293 37922734 + 1.16667 NA intron (NM_021943, intron 1 of 5) L1ME3F|LINE|L1 102786 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 203.501-2 chr15 43514715 43514906 + 1.16667 NA Intergenic Intergenic -2798 NM_002373 4130 Hs.194301 NM_002373 ENSG00000166963 MAP1A MAP1L|MTAP1A microtubule associated protein 1A protein-coding 188.167-16 chr19 10251571 10251967 + 1.16667 NA promoter-TSS (NM_146388) promoter-TSS (NM_146388) -195 NM_146387 51073 Hs.279652 NM_015956 ENSG00000105364 MRPL4 CGI-28|L4mt mitochondrial ribosomal protein L4 protein-coding 239.667-36 chr5 77518264 77518477 + 1.16667 NA Intergenic Intergenic -26054 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 174.834-3 chr11 76056090 76056351 + 1.16667 NA intron (NM_003369, intron 12 of 14) L1ME2z|LINE|L1 150282 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 250.667-19 chr2 103362466 103362807 + 1.16667 NA Intergenic Intergenic -378207 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 250.667-32 chr4 77619115 77619524 + 1.16667 NA Intergenic Intergenic 107566 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 266.834-3 chr22 43187727 43188033 + 1.16667 NA promoter-TSS (NM_015140) promoter-TSS (NM_015140) -746 NM_015140 23170 Hs.517670 NM_015140 ENSG00000100304 TTLL12 dJ526I14.2 tubulin tyrosine ligase like 12 protein-coding 374.501 chr2 16923902 16924383 + 1.16667 NA Intergenic Intergenic -258308 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 282.167-20 chr8 129769644 129770092 + 1.16667 NA intron (NM_031415, intron 3 of 13) L1MA9|LINE|L1 16756 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 187.5-14 chr12 51637726 51638160 + 1.16667 NA intron (NM_001369788, intron 1 of 25) Tigger1|DNA|TcMar-Tigger 46707 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 247.667-17 chr2 16508217 16508452 + 1.16667 NA Intergenic CpG 157500 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 260.334-2 chr1 239753800 239754286 + 1.16667 NA intron (NM_000740, intron 3 of 4) L2a|LINE|L2 -34924 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 286.833-3 chr14 45138755 45139089 + 1.16667 NA intron (NM_001308133, intron 2 of 21) intron (NM_001308133, intron 2 of 21) 2983 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 214.834-3 chr14 28839483 28839804 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL -53856 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 194.834-7 chr14 49153805 49154255 + 1.16667 NA Intergenic Charlie13a|DNA|hAT-Charlie 432350 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 229.667-16 chr17 7857500 7857966 + 1.16667 NA promoter-TSS (NM_144607) promoter-TSS (NM_144607) 158 NM_001320925 84316 Hs.565094 NM_032356 ENSG00000183011 NAA38 LSMD1|MAK31|PFAAP2 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding 255.167-30 chr8 137256288 137256679 + 1.16667 NA Intergenic Intergenic 157105 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 452.834 chr11 115201580 115202174 + 1.16667 NA intron (NM_001301045, intron 7 of 10) intron (NM_001301045, intron 7 of 10) -131700 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 267.334 chr11 76118915 76119315 + 1.16667 NA intron (NM_003369, intron 14 of 14) L2|LINE|L2 87387 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 359.334-6 chr8 130790081 130790790 + 1.16667 NA intron (NM_001115, intron 15 of 17) intron (NM_001115, intron 15 of 17) 250474 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 196.834-4 chr22 21809901 21810098 + 1.16667 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 57681 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 174-51 chr9 108444956 108445252 + 1.16667 NA Intergenic Intergenic 410882 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 228.5-29 chr6 47011394 47011777 + 1.16667 NA intron (NM_153840, intron 10 of 14) intron (NM_153840, intron 10 of 14) 30747 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 216.333-42 chr8 79538944 79539397 + 1.16667 NA Intergenic Intergenic -71947 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 187-31 chr4 59482156 59482465 + 1.16667 NA Intergenic L1MB1|LINE|L1 468737 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 176.833-33 chr5 64745076 64745348 + 1.16667 NA intron (NM_173829, intron 2 of 4) intron (NM_173829, intron 2 of 4) 23479 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 214.5-36 chr9 27535228 27535473 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -5536 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 291.333-3 chr10 13613245 13613651 + 1.16667 NA intron (NM_003675, intron 6 of 9) intron (NM_003675, intron 6 of 9) 26483 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 322.001 chr12 3414112 3414483 + 1.16667 NA intron (NM_001256536, intron 1 of 9) MER21B|LTR|ERVL 32948 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 200.834-3 chr1 110783874 110784092 + 1.16667 NA Intergenic Intergenic -87216 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 269.501 chr10 114437934 114438437 + 1.16667 NA intron (NM_001352440, intron 19 of 20) intron (NM_001352440, intron 19 of 20) -33407 NM_001351068 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 256.167-16 chr4 35150241 35150502 + 1.16667 NA Intergenic Intergenic -880624 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 210.167-19 chr18 77899828 77900288 + 1.16667 NA Intergenic CpG 93669 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 285.667-20 chr8 81020908 81021199 + 1.16667 NA intron (NM_018440, intron 3 of 8) MIR3|SINE|MIR 91015 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 250.167-11 chr3 7340071 7340479 + 1.16667 NA intron (NM_000844, intron 4 of 9) THE1C|LTR|ERVL-MaLR 195009 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 259.667-7 chr15 58217399 58217719 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR 79178 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 223.833-25 chrX 108606020 108606371 + 1.16667 NA intron (NM_033380, intron 28 of 50) L1MC5a|LINE|L1 130182 NM_003604 8471 Hs.407141 NM_003604 ENSG00000133124 IRS4 IRS-4|PY160 insulin receptor substrate 4 protein-coding 176-24 chr2 207052081 207052246 + 1.16667 NA Intergenic L2|LINE|L2 57910 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 247.834-5 chr7 2580648 2580912 + 1.16667 NA intron (NM_001287501, intron 6 of 19) intron (NM_001287501, intron 6 of 19) 21801 NM_001287500 23288 Hs.520627 NM_152558 ENSG00000106012 IQCE 1700028P05Rik|PAPA7 IQ motif containing E protein-coding 315-2 chr12 44035034 44035384 + 1.16667 NA intron (NM_001286212, intron 3 of 6) MLT2B1|LTR|ERVL 199128 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 248.5-35 chr6 154445533 154445834 + 1.16667 NA intron (NM_001368116, intron 2 of 12) intron (NM_001368116, intron 2 of 12) -11610 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 217-24 chr3 165206103 165206480 + 1.16667 NA promoter-TSS (NR_125764) promoter-TSS (NR_125764) -669 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 164.5-42 chr5 58678954 58679151 + 1.16667 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 95977 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 230.501-3 chr8 73643274 73643630 + 1.16667 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 103388 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 249.667 chr1 150998005 150998415 + 1.16667 NA exon (NM_001040217, exon 8 of 10) exon (NM_001040217, exon 8 of 10) 8587 NM_001163260 55793 Hs.743952 NM_018379 ENSG00000143409 MINDY1 FAM63A|MINDY-1 MINDY lysine 48 deubiquitinase 1 protein-coding 289.334-7 chr4 41523105 41523522 + 1.16667 NA intron (NM_001289122, intron 2 of 25) MER58A|DNA|hAT-Charlie -14844 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 252.334-6 chr3 4423366 4423784 + 1.16667 NA intron (NM_001164674, intron 2 of 7) intron (NM_001164674, intron 2 of 7) 43694 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 302.334-14 chr9 28317595 28318192 + 1.16667 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 401412 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 283.334-13 chr8 34665733 34666001 + 1.16667 NA Intergenic Intergenic -118054 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 221-36 chr8 103789182 103789415 + 1.16667 NA intron (NM_001348497, intron 3 of 22) MLT1E|LTR|ERVL-MaLR -29922 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 323.667-20 chr3 172822990 172823476 + 1.16667 NA Intergenic Intergenic 72231 NM_001349096 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 204.167-23 chr8 92622669 92622951 + 1.16667 NA intron (NR_125827, intron 3 of 4) L1M5|LINE|L1 32684 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 268.667-31 chrX 153900670 153901039 + 1.16667 NA Intergenic L1ME1|LINE|L1 -1771 NR_027419 554 Hs.567240 NM_000054 ENSG00000126895 AVPR2 ADHR|DI1|DIR|DIR3|NDI|V2R arginine vasopressin receptor 2 protein-coding 224.167-32 chr9 74199396 74199598 + 1.16667 NA Intergenic Intergenic -172034 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 335.5-13 chr7 124884178 124884726 + 1.16667 NA intron (NM_015450, intron 6 of 18) intron (NM_015450, intron 6 of 18) 45373 NM_015450 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 350 chr1 97713031 97713420 + 1.16667 NA intron (NM_000110, intron 5 of 22) intron (NM_000110, intron 5 of 22) -83696 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 190.834 chr13 23088134 23088303 + 1.16667 NA Intergenic Intergenic -92703 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 267.501-2 chr8 113461958 113462192 + 1.16667 NA Intergenic Intergenic -25136 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 224.334-11 chr7 89825115 89825455 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -294115 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 275-5 chr10 98033340 98033675 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -2679 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 308.167-6 chr18 11781466 11781939 + 1.16667 NA intron (NM_001369387, intron 4 of 11) intron (NM_001369387, intron 4 of 11) 29617 NM_001369387 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 248.334 chr1 84470208 84470421 + 1.16667 NA Intergenic Intergenic -8952 NM_025065 80135 Hs.481202 NM_025065 ENSG00000117133 RPF1 BXDC5 ribosome production factor 1 homolog protein-coding 254.001-3 chr7 2160110 2160328 + 1.16667 NA intron (NM_001013837, intron 10 of 18) AluJb|SINE|Alu -71167 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 357.834-4 chr16 21642131 21642570 + 1.16667 NA intron (NM_005849, intron 5 of 5).2 U6|snRNA|snRNA 10258 NM_005849 10261 Hs.530902 NM_005849 ENSG00000140749 IGSF6 DORA immunoglobulin superfamily member 6 protein-coding 205.334-10 chr4 139706554 139706767 + 1.16667 NA intron (NM_001204367, intron 4 of 4) intron (NM_001204367, intron 4 of 4) 40841 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 366.5-5 chr3 49462074 49462450 + 1.16667 NA Intergenic L2c|LINE|L2 -6441 NM_001177643 1605 Hs.76111 NM_004393 ENSG00000173402 DAG1 156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9 dystroglycan 1 protein-coding 206.667-13 chr13 44972893 44973178 + 1.16667 NA intron (NM_012345, intron 5 of 9) intron (NM_012345, intron 5 of 9) 16436 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 223.667-37 chr3 58541256 58541496 + 1.16667 NA Intergenic LTR8|LTR|ERV1 -4186 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|CBAS6|THCCox acyl-CoA oxidase 2 protein-coding 228.333-24 chr5 122076614 122076873 + 1.16667 NA intron (NM_001317073, intron 1 of 5) intron (NM_001317073, intron 1 of 5) 431 NM_001317073 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 175-40 chr3 81149954 81150128 + 1.16667 NA Intergenic Intergenic 156173 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 388.5-2 chr10 104569211 104569863 + 1.16667 NA Intergenic L1MA8|LINE|L1 -71753 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 292.334-2 chr15 41163788 41164231 + 1.16667 NA Intergenic Intergenic -47729 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 250.333-11 chr19 57678567 57678846 + 1.16667 NA exon (NM_152677, exon 5 of 5) exon (NM_152677, exon 5 of 5) -3271 NM_138347 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 314-17 chr5 101304533 101304860 + 1.16667 NA Intergenic Intergenic -401414 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 171.5 chr1 156896746 156897024 + 1.16667 NA intron (NM_001080471, intron 1 of 22) intron (NM_001080471, intron 1 of 22) 3154 NM_001080471 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 230.334-2 chr14 28866380 28866756 + 1.16667 NA Intergenic MER47A|DNA|TcMar-Tigger -80781 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 284.001 chr2 128950294 128950685 + 1.16667 NA Intergenic Intergenic 85889 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 195.834-10 chr9 100495084 100495363 + 1.16667 NA intron (NM_003692, intron 1 of 9) intron (NM_003692, intron 1 of 9) 22074 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 190-34 chr22 20156912 20157126 + 1.16667 NA Intergenic Intergenic -5964 NM_001365892 388849 Hs.454905 NM_001243537 ENSG00000234409 CCDC188 - coiled-coil domain containing 188 protein-coding 236.5-17 chr2 11187391 11187675 + 1.16667 NA intron (NM_001321643, intron 32 of 32) intron (NM_001321643, intron 32 of 32) 32066 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 262.334 chr1 98025737 98026152 + 1.16667 NA intron (NR_046105, intron 3 of 4) MIRb|SINE|MIR 19407 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 232.667-3 chr1 84782616 84782902 + 1.16667 NA Intergenic Intergenic -92291 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 208.167-21 chr6 109009663 109009864 + 1.16667 NA promoter-TSS (NM_001199934) promoter-TSS (NM_001199934) -208 NM_001199933 27244 Hs.591336 NM_014454 ENSG00000080546 SESN1 PA26|SEST1 sestrin 1 protein-coding 194.167-23 chr3 159158074 159158459 + 1.16667 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 88947 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 196.167-26 chr3 82507532 82507968 + 1.16667 NA Intergenic Intergenic 521608 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 165.333-43 chr7 35430721 35431046 + 1.16667 NA Intergenic L1P4d|LINE|L1 117028 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 340.667-7 chr18 68843505 68844115 + 1.16667 NA intron (NM_001093729, intron 5 of 9) intron (NM_001093729, intron 5 of 9) 45730 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 210.833-28 chr8 68578214 68578556 + 1.16667 NA intron (NR_146186, intron 7 of 12) intron (NR_146186, intron 7 of 12) -246894 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 262.334-14 chr7 26783817 26784211 + 1.16667 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 73709 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 218.5-27 chr4 108906625 108906858 + 1.16667 NA intron (NM_198721, intron 12 of 36) L2a|LINE|L2 -143688 NM_001146590 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 204.001 chr1 54351292 54351753 + 1.16667 NA intron (NM_001009955, intron 4 of 16) Tigger12|DNA|TcMar-Tigger 54872 NM_001009955 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 259.334 chr11 97333862 97334111 + 1.16667 NA Intergenic Intergenic 825561 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 205.334-12 chr7 111931847 111932162 + 1.16667 NA intron (NM_001363540, intron 12 of 52) intron (NM_001363540, intron 12 of 52) 123499 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 384.833 chr1 44354981 44355698 + 1.16667 NA promoter-TSS (NM_001301699) promoter-TSS (NM_001301699) -60 NM_001301700 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 192.834-4 chr9 35473481 35473768 + 1.16667 NA intron (NR_003581, intron 13 of 17) L1MB4|LINE|L1 -16487 NM_001330740 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 329.667-12 chr8 134683750 134684375 + 1.16667 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 12493 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 301.167-16 chr5 42436707 42437174 + 1.16667 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 11959 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 194.667-33 chr2 4267763 4267964 + 1.16667 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat 293702 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 278.667-10 chr14 73893820 73894314 + 1.16667 NA intron (NM_001242927, intron 3 of 10) intron (NM_001242927, intron 3 of 10) 7208 NM_001242927 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 203.667-41 chr6 56698865 56699233 + 1.16667 NA intron (NM_001144770, intron 6 of 94) intron (NM_001144770, intron 6 of 94) -56160 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 527.001-3 chr4 32056503 32057297 + 1.16667 NA intron (NR_125936, intron 1 of 2) L1MC4a|LINE|L1 -34478 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 189.667-40 chr4 120800046 120800271 + 1.16667 NA intron (NM_001300824, intron 7 of 13) intron (NM_001300824, intron 7 of 13) 122708 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 208.834-8 chr7 7843144 7843382 + 1.16667 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -124656 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 221.334-6 chr15 62307924 62308180 + 1.16667 NA Intergenic L3|LINE|CR1 -3318 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 270.5-4 chr1 114716054 114716402 + 1.16667 NA TTS (NM_001242892) TTS (NM_001242892) 543 NM_002524 4893 Hs.486502 NM_002524 ENSG00000213281 NRAS ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6 NRAS proto-oncogene, GTPase protein-coding 278-11 chr14 85950971 85951307 + 1.16667 NA intron (NR_110155, intron 1 of 3) L1ME3A|LINE|L1 16461 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 372.667-8 chr3 20434385 20434941 + 1.16667 NA Intergenic Intergenic 92195 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 185.834-5 chr21 21951654 21951934 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie 146665 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 370.834-2 chr13 29455301 29455680 + 1.16667 NA intron (NM_015233, intron 2 of 8) L1MEf|LINE|L1 26830 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 241.167-3 chr10 99735417 99735819 + 1.16667 NA intron (NM_015960, intron 1 of 8) AluSz6|SINE|Alu -2952 NM_001320976 1355 Hs.28326 NM_004376 ENSG00000014919 COX15 CEMCOX2 cytochrome c oxidase assembly homolog COX15 protein-coding 375.5 chr11 31487285 31488024 + 1.16667 NA intron (NM_144981, intron 1 of 6) intron (NM_144981, intron 1 of 6) 21968 NM_001304274 196294 Hs.502223 NM_144981 ENSG00000148950 IMMP1L IMMP1|IMP1|IMP1-LIKE inner mitochondrial membrane peptidase subunit 1 protein-coding 282.167-8 chr20 54436435 54436676 + 1.16667 NA Intergenic MER66B|LTR|ERV1 -39038 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 250.334-6 chr3 194093641 194093885 + 1.16667 NA Intergenic Intergenic -22793 NR_136179 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 329.001-4 chr8 117831728 117832160 + 1.16667 NA intron (NM_000127, intron 3 of 10) intron (NM_000127, intron 3 of 10) 88969 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 163.167-19 chr18 70744626 70744820 + 1.16667 NA Intergenic Intergenic -93769 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 330-23 chr9 97626469 97626885 + 1.16667 NA intron (NM_139246, intron 2 of 9) L1M5|LINE|L1 6691 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 357.834-7 chr5 123413212 123413624 + 1.16667 NA intron (NM_153223, intron 4 of 20) intron (NM_153223, intron 4 of 20) 10174 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 282.5-12 chr3 140111797 140112168 + 1.16667 NA intron (NM_022131, intron 1 of 16) MIRb|SINE|MIR 176797 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 244.334-9 chr6 146663199 146663578 + 1.16667 NA intron (NM_024694, intron 5 of 35) MLT1A0|LTR|ERVL-MaLR 64416 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 252.667-15 chr20 22107865 22108120 + 1.16667 NA Intergenic Intergenic 53902 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 289.501 chr1 191765799 191766062 + 1.16667 NA Intergenic Intergenic -392532 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 253.167-15 chr3 106896490 106896713 + 1.16667 NA Intergenic Intergenic 344037 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 316.167-16 chrX 82293552 82293976 + 1.16667 NA Intergenic L1ME4b|LINE|L1 1091662 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 220.167-2 chr10 105599503 105599868 + 1.16667 NA Intergenic Intergenic 220648 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 335.5-4 chr2 129404970 129405383 + 1.16667 NA Intergenic L1M4|LINE|L1 -131285 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 280-15 chr2 214261443 214261928 + 1.16667 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -149369 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 172.833-11 chr15 91301266 91301693 + 1.16667 NA 3' UTR (NM_001323031, exon 13 of 13) 3' UTR (NM_001323031, exon 13 of 13) -161860 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 399.833-3 chr3 99610485 99611030 + 1.16667 NA Intergenic L1PREC2|LINE|L1 -27837 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 272-23 chr3 147617185 147617549 + 1.16667 NA Intergenic Intergenic 196040 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 186-33 chr4 82060397 82060603 + 1.16667 NA Intergenic Intergenic 313491 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 254.834-6 chr8 114605133 114605366 + 1.16667 NA Intergenic L1MEg|LINE|L1 1062764 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 384.168 chr14 57655742 57656127 + 1.16667 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -162077 NM_001283056 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 247.833-6 chr12 7141831 7142294 + 1.16667 NA intron (NM_014718, intron 9 of 17) intron (NM_014718, intron 9 of 17) 11691 NM_014718 9746 Hs.535378 NM_014718 ENSG00000139182 CLSTN3 CDHR14|CSTN3|alcbeta calsyntenin 3 protein-coding 190.334-7 chr4 73466066 73466401 + 1.16667 NA Intergenic L1MA7|LINE|L1 -15512 NM_001133 173 Hs.168718 NM_001133 ENSG00000079557 AFM ALB2|ALBA|ALF afamin protein-coding 193.667-27 chr2 83128534 83128816 + 1.16667 NA Intergenic L1MEc|LINE|L1 271872 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 220.5-17 chr17 50005103 50005417 + 1.16667 NA Intergenic L1M5|LINE|L1 -10036 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 297.334-6 chr4 66136958 66137389 + 1.16667 NA Intergenic Intergenic -139651 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 168.334-10 chr8 125218688 125218937 + 1.16667 NA intron (NM_001349486, intron 5 of 7) L1MB2|LINE|L1 126952 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 201.5-18 chr17 63216816 63217066 + 1.16667 NA intron (NM_025185, intron 6 of 25) L1ME1|LINE|L1 223326 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 330.334-3 chr2 146522842 146523218 + 1.16667 NA Intergenic Intergenic -64027 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 241.334-8 chr7 28405011 28405224 + 1.16667 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -7401 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 214.167-30 chr7 129271889 129272183 + 1.16667 NA intron (NM_001130720, intron 1 of 16) MLT1G|LTR|ERVL-MaLR 47006 NM_015328 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 245 chr1 84604417 84604783 + 1.16667 NA intron (NR_125761, intron 2 of 2) LTR25-int|LTR|ERV1 16431 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 186.667-7 chr1 159281498 159281692 + 1.16667 NA Intergenic Intergenic -8119 NM_002001 2205 Hs.897 NM_002001 ENSG00000179639 FCER1A FCE1A|FcERI Fc fragment of IgE receptor Ia protein-coding 267.334-2 chr2 185215959 185216359 + 1.16667 NA Intergenic L1ME1|LINE|L1 -49087 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 168.334-8 chr6 26594493 26594698 + 1.16667 NA Intergenic Intergenic -2358 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 296.167-14 chr4 37621612 37622046 + 1.16667 NA intron (NM_001085400, intron 6 of 6) intron (NM_001085400, intron 6 of 6) 37596 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 202.167-15 chr15 79657113 79657461 + 1.16667 NA Intergenic Intergenic 224771 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 238.667-18 chr5 17937110 17937505 + 1.16667 NA Intergenic L1MA4A|LINE|L1 130033 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 196-28 chr20 48047585 48047995 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -57673 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 335.167-7 chr2 166360882 166361443 + 1.16667 NA intron (NM_001365536, intron 1 of 26) MIRb|SINE|MIR 14782 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 195.001 chr1 185800660 185800929 + 1.16667 NA intron (NM_031935, intron 1 of 106) intron (NM_031935, intron 1 of 106) 66403 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 238-26 chr5 45390858 45391097 + 1.16667 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 305403 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 177.5-20 chr14 27640232 27640468 + 1.16667 NA TTS (NR_039992) TTS (NR_039992) -7072 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 166.5-20 chr18 35493717 35493969 + 1.16667 NA intron (NM_001098817, intron 1 of 6) intron (NM_001098817, intron 1 of 6) 3765 NM_001308064 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 182.834-5 chr16 79142557 79142721 + 1.16667 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 458098 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 261-12 chr2 175112073 175112410 + 1.16667 NA intron (NR_045770, intron 9 of 15) intron (NR_045770, intron 9 of 15) 55468 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 302.334-8 chr18 23371514 23371821 + 1.16667 NA intron (NM_032933, intron 7 of 14) intron (NM_032933, intron 7 of 14) 66294 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 287.167-8 chr22 29821054 29821368 + 1.16667 NA intron (NM_001369944, intron 2 of 16) intron (NM_001369944, intron 2 of 16) 17063 NM_001369926 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 183.334-5 chr15 55859341 55859762 + 1.16667 NA intron (NM_198400, intron 4 of 21) AluSz6|SINE|Alu 57580 NM_001284340 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 219.167-19 chr7 101143961 101144235 + 1.16667 NA Intergenic Intergenic -10378 NM_001283 1174 Hs.489365 NM_001283 ENSG00000106367 AP1S1 AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A adaptor related protein complex 1 subunit sigma 1 protein-coding 168.5-45 chr7 94153540 94153902 + 1.16667 NA Intergenic Intergenic -149366 NM_001317739 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 472.5-5 chr22 24146678 24147244 + 1.16667 NA intron (NM_012295, intron 29 of 36) MIRb|SINE|MIR -34526 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 348.667-7 chr20 8608560 8608923 + 1.16667 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) -222444 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 371.834 chr3 133818231 133818811 + 1.16667 NA intron (NR_163491, intron 6 of 7) intron (NR_163491, intron 6 of 7) 12706 NR_163491 58477 Hs.12152 NM_021203 ENSG00000144867 SRPRB APMCF1|SR-beta SRP receptor subunit beta protein-coding 213-15 chr12 21443148 21443497 + 1.16667 NA intron (NM_001350913, intron 2 of 10) intron (NM_001350913, intron 2 of 10) 5407 NM_001350912 79912 Hs.709545 NM_024854 ENSG00000121350 PYROXD1 MFM8 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 358.167-3 chr12 122335946 122336447 + 1.16667 NA intron (NM_198240, intron 10 of 23) intron (NM_198240, intron 10 of 23) -59346 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 210.001-2 chr5 53440622 53440841 + 1.16667 NA Intergenic Intergenic -39898 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 210.501-3 chr8 43031437 43031628 + 1.16667 NA TTS (NM_032410) TTS (NM_032410) -24767 NR_033698 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 212-8 chr10 16730266 16730541 + 1.16667 NA intron (NM_152724, intron 6 of 7) MLT1H2|LTR|ERVL-MaLR 87021 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 306.001-3 chr14 51346860 51347255 + 1.16667 NA intron (NR_038358, intron 1 of 4) MSTA-int|LTR|ERVL-MaLR 13664 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 190.834-11 chr7 5102798 5103092 + 1.16667 NA Intergenic L1MA5|LINE|L1 30885 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 187.833-24 chr6 94069707 94070039 + 1.16667 NA Intergenic Intergenic 351570 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 210.167-35 chr9 118048446 118048842 + 1.16667 NA Intergenic L1MC3|LINE|L1 344241 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 241.167-17 chr2 67348015 67348285 + 1.16667 NA Intergenic Intergenic -49183 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 187.333-10 chr10 119840832 119841039 + 1.16667 NA exon (NM_001256378, exon 11 of 16) exon (NM_001256378, exon 11 of 16) 21678 NM_001243194 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 267.834 chr14 64395575 64395918 + 1.16667 NA intron (NM_005956, intron 1 of 27) MER20|DNA|hAT-Charlie 7393 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 303.834-7 chr5 41637772 41638132 + 1.16667 NA Intergenic Intergenic -127351 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 186.834 chr11 28958323 28958587 + 1.16667 NA Intergenic Intergenic -480907 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 232.333-6 chr12 50101696 50102188 + 1.16667 NA Intergenic Intergenic -2066 NM_001257199 2819 Hs.524418 NM_005276 ENSG00000167588 GPD1 GPD-C|GPDH-C|HTGTI glycerol-3-phosphate dehydrogenase 1 protein-coding 327-12 chr2 30114849 30115528 + 1.16667 NA Intergenic Intergenic -31819 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 515-9 chr7 44847864 44848408 + 1.16667 NA promoter-TSS (NM_201517) promoter-TSS (NM_201517) -10 NM_201517 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 298.501 chr14 30906984 30907264 + 1.16667 NA intron (NM_001083893, intron 13 of 17) intron (NM_001083893, intron 13 of 17) -17316 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 233.501-2 chr13 91397348 91397746 + 1.16667 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -1074 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 261.834-6 chr3 189149287 189149566 + 1.16667 NA Intergenic Intergenic -22545 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 348.834-2 chr3 182158799 182159354 + 1.16667 NA Intergenic Intergenic 206712 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 225.667-32 chr5 44750173 44750463 + 1.16667 NA intron (NR_109865, intron 1 of 2) intron (NR_109865, intron 1 of 2) 58475 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 252.167-24 chr9 17338553 17338886 + 1.16667 NA intron (NM_001365029, intron 10 of 25) intron (NM_001365029, intron 10 of 25) 203679 NM_001365029 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 175.334-2 chr16 85147349 85147715 + 1.16667 NA intron (NR_033984, intron 2 of 2) intron (NR_033984, intron 2 of 2) 10382 NR_033984 400548 Hs.592054 NR_033984 ENSG00000278214 LINC02139 - long intergenic non-protein coding RNA 2139 ncRNA 436.001-2 chr21 37463046 37463651 + 1.16667 NA intron (NM_001347721, intron 2 of 11) intron (NM_001347721, intron 2 of 11) 43049 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 207-18 chr2 200575732 200576119 + 1.16667 NA intron (NM_152524, intron 8 of 8) L1MC5a|LINE|L1 -10089 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 182.334-7 chr9 109346439 109346817 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -25664 NM_018424 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 169.334-8 chr8 83260680 83260887 + 1.16667 NA Intergenic Intergenic -142975 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 177.5-24 chr17 43520185 43520499 + 1.16667 NA intron (NR_136228, intron 19 of 23) intron (NR_136228, intron 19 of 23) 10093 NM_001261439 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 173-25 chr2 127295206 127295523 + 1.16667 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -1188 NM_000122 2071 Hs.469872 NM_000122 ENSG00000163161 ERCC3 BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding 334.667-4 chr14 64661910 64662444 + 1.16667 NA Intergenic AluSx3|SINE|Alu -42247 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 377.5-2 chr10 53685767 53686285 + 1.16667 NA Intergenic MIR|SINE|MIR -800204 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 252.834-2 chr10 43713566 43713904 + 1.16667 NA Intergenic L1MB2|LINE|L1 -64854 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 204.5-37 chr9 91777068 91777365 + 1.16667 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) -140871 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 169.834-11 chrX 119028122 119028287 + 1.16667 NA Intergenic LTR12D|LTR|ERV1 51872 NM_001289109 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 222.667-40 chr8 101289275 101289624 + 1.16667 NA Intergenic MER102b|DNA|hAT-Charlie -79444 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 387.5-2 chr15 64209678 64210148 + 1.16667 NA intron (NM_001329607, intron 6 of 11) intron (NM_001329607, intron 6 of 11) -46758 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 274.333-20 chr5 37657894 37658400 + 1.16667 NA intron (NM_001345998, intron 10 of 17) Tigger2a|DNA|TcMar-Tigger 176675 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 176.834-4 chr20 59836001 59836287 + 1.16667 NA intron (NM_080672, intron 8 of 12) intron (NM_080672, intron 8 of 12) 97493 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 188.334-11 chr8 83915117 83915302 + 1.16667 NA Intergenic LOR1-int|LTR|ERV1 -267578 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 249-7 chr14 23076748 23077060 + 1.16667 NA intron (NM_014977, intron 8 of 18) intron (NM_014977, intron 8 of 18) -5335 NM_001164816 22985 Hs.124490 NM_014977 ENSG00000100813 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 261.167-20 chr7 108148291 108148531 + 1.16667 NA non-coding (NR_163868, exon 33 of 33) non-coding (NR_163868, exon 33 of 33) -18050 NM_001318047 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 245.334-11 chr5 147101774 147102122 + 1.16667 NA Intergenic Intergenic -20428 NM_001271899 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 320.833-12 chr9 115828761 115829291 + 1.16667 NA Intergenic L2a|LINE|L2 -84787 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 225.834-3 chr11 33556418 33556727 + 1.16667 NA intron (NM_012194, intron 6 of 20) L1MB4|LINE|L1 144168 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 385.001 chr4 187603360 187603812 + 1.16667 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) 69055 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 197.167-17 chr18 68720282 68720560 + 1.16667 NA intron (NM_001093729, intron 2 of 9) MER68C|LTR|ERVL 5205 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 328.501-3 chr8 116407461 116407871 + 1.16667 NA Intergenic Intergenic -82607 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 206.167-11 chr16 89735552 89735935 + 1.16667 NA intron (NR_110129, intron 9 of 10) AluSx1|SINE|Alu 14206 NM_001113525 92822 Hs.290154 NM_152287 ENSG00000158805 ZNF276 CENP-Z|CENPZ|ZADT|ZFP276|ZNF477 zinc finger protein 276 protein-coding 225.333-16 chr14 68187781 68188236 + 1.16667 NA intron (NM_133509, intron 7 of 10) AluSz|SINE|Alu 364416 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 248.167-3 chr1 248303561 248303977 + 1.16667 NA Intergenic Intergenic -8191 NM_001004692 127064 Hs.553582 NM_001004692 ENSG00000177201 OR2T12 OR1-57 olfactory receptor family 2 subfamily T member 12 protein-coding 181-9 chr12 120331827 120332048 + 1.16667 NA Intergenic Intergenic -4158 NM_000928 5319 Hs.992 NM_000928 ENSG00000170890 PLA2G1B PLA2|PLA2A|PPLA2 phospholipase A2 group IB protein-coding 310.667-19 chr5 150021739 150022355 + 1.16667 NA intron (NM_014983, intron 6 of 19) intron (NM_014983, intron 6 of 19) 21308 NM_014983 22993 Hs.719189 NM_014983 ENSG00000113716 HMGXB3 HMGX3|SMF HMG-box containing 3 protein-coding 338.501-2 chr5 77343257 77343714 + 1.16667 NA intron (NM_001029851, intron 6 of 18) Tigger3b|DNA|TcMar-Tigger 132805 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 188.5-8 chr11 25969335 25969542 + 1.16667 NA Intergenic Intergenic -219685 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 224.334-7 chr3 32934138 32934358 + 1.16667 NA Intergenic Intergenic -17396 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 281.167-10 chr17 40014351 40014950 + 1.16667 NA promoter-TSS (NM_000759) promoter-TSS (NM_000759) -790 NM_172220 1440 Hs.2233 NM_000759 ENSG00000108342 CSF3 C17orf33|CSF3OS|GCSF colony stimulating factor 3 protein-coding 191.333-28 chr3 50260428 50260811 + 1.16667 NA Intergenic CpG 6752 NR_110702 101928931 Hs.587216 NR_110702 ENSG00000232352 SEMA3B-AS1 - SEMA3B antisense RNA 1 (head to head) ncRNA 187.167-11 chr12 9061478 9061662 + 1.16667 NA intron (NR_034140, intron 1 of 2) AluJo|SINE|Alu 3500 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 210.501 chr12 81610783 81610992 + 1.16667 NA intron (NM_001220474, intron 2 of 30) L1PA16|LINE|L1 -12516 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 197.834-2 chr1 31866965 31867238 + 1.16667 NA Intergenic Intergenic -51050 NM_144569 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 181-7 chr11 95705740 95705961 + 1.16667 NA Intergenic Intergenic 83932 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 238.5-33 chrX 118325052 118325357 + 1.16667 NA Intergenic MER5B|DNA|hAT-Charlie -20869 NM_001184966 54521 Hs.98510 NM_019045 ENSG00000131725 WDR44 RAB11BP|RPH11|SYM-4 WD repeat domain 44 protein-coding 179-5 chr10 73643456 73643676 + 1.16667 NA Intergenic FLAM_A|SINE|Alu -2092 NM_021245 58529 Hs.238756 NM_021245 ENSG00000177791 MYOZ1 CS-2|FATZ|MYOZ myozenin 1 protein-coding 370.5-9 chr5 177517304 177517698 + 1.16667 NA promoter-TSS (NM_016222) promoter-TSS (NM_016222) -540 NM_001321732 51428 Hs.484288 NM_016222 ENSG00000183258 DDX41 ABS|MPLPF DEAD-box helicase 41 protein-coding 180.5-16 chr15 23869436 23869693 + 1.16667 NA Intergenic Intergenic -105583 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 231.167 chr1 39265777 39266154 + 1.16667 NA intron (NM_012090, intron 5 of 92) MIRb|SINE|MIR -143108 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 232.167-11 chr2 81993179 81993401 + 1.16667 NA Intergenic Intergenic -526344 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 208.833-26 chr6 65496566 65496950 + 1.16667 NA intron (NM_001292009, intron 2 of 43) MIRb|SINE|MIR 83046 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 167.834-5 chr14 82833766 82833932 + 1.16667 NA Intergenic Intergenic 191217 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 253.834-3 chr17 18355807 18356086 + 1.16667 NA exon (NM_148918, exon 2 of 11) exon (NM_148918, exon 2 of 11) 7604 NM_004169 6470 Hs.513987 NM_004169 ENSG00000176974 SHMT1 CSHMT|SHMT serine hydroxymethyltransferase 1 protein-coding 316.667-9 chr21 16085111 16085514 + 1.16667 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) 14198 NR_111005 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 166.834-4 chr2 54234932 54235126 + 1.16667 NA intron (NM_138448, intron 3 of 3) HSMAR2|DNA|TcMar-Mariner 21200 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 172.334-2 chr17 54239343 54239734 + 1.16667 NA Intergenic L1ME3G|LINE|L1 416611 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 356.667-12 chr7 50529805 50530266 + 1.16667 NA intron (NM_001242888, intron 2 of 12) AluJb|SINE|Alu -1724 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 314-21 chr8 100135112 100135638 + 1.16667 NA intron (NR_036491, intron 3 of 4) HAL1|LINE|L1 10442 NM_001029860 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 313.167-14 chr8 89259026 89259339 + 1.16667 NA Intergenic Intergenic 498529 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 169.834 chr11 124945435 124945587 + 1.16667 NA Intergenic MARNA|DNA|TcMar-Mariner -8691 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 249-34 chr8 121636672 121636935 + 1.16667 NA intron (NM_005328, intron 1 of 3) intron (NM_005328, intron 1 of 3) -2543 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 343.334-6 chr5 151370690 151371221 + 1.16667 NA Intergenic AluSx1|SINE|Alu -23396 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 274.333-23 chr8 89647376 89647848 + 1.16667 NA Intergenic Intergenic 110099 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 217.334-7 chr3 26135318 26135954 + 1.16667 NA Intergenic Intergenic -261941 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 428.667-11 chr9 101697207 101697928 + 1.16667 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 41013 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 226.667-33 chr5 144424052 144424275 + 1.16667 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 218772 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 209.5 chr1 41718471 41718705 + 1.16667 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 200334 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 265-2 chr11 33643967 33644307 + 1.16667 NA intron (NM_012194, intron 16 of 20) intron (NM_012194, intron 16 of 20) 56603 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 203.167-11 chr17 65785334 65785613 + 1.16667 NA intron (NM_001353129, intron 21 of 26) L1MB7|LINE|L1 40978 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 245.5-2 chr1 178251272 178251853 + 1.16667 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -89889 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 307.5-13 chr16 87089400 87089928 + 1.16667 NA Intergenic Intergenic 31880 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 178.834-10 chr7 113284561 113284747 + 1.16667 NA Intergenic Intergenic -166072 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 176.833-39 chr8 3646449 3646820 + 1.16667 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -918183 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 274.167-13 chr6 46735784 46736322 + 1.16667 NA promoter-TSS (NM_001168357) promoter-TSS (NM_001168357) -360 NM_001168357 7941 Hs.584823 NM_005084 ENSG00000146070 PLA2G7 LDL-PLA2|LP-PLA2|PAFAD|PAFAH phospholipase A2 group VII protein-coding 472.501-2 chr1 112465888 112466524 + 1.16667 NA promoter-TSS (NM_004185) promoter-TSS (NM_004185) -335 NM_004185 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 193.834 chr10 17220530 17220732 + 1.16667 NA intron (NR_108060, intron 1 of 3) intron (NR_108060, intron 1 of 3) 6267 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 181.167-17 chr15 87575761 87576101 + 1.16667 NA promoter-TSS (NR_026869) promoter-TSS (NR_026869) -998 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 345.834-4 chr5 41083129 41083924 + 1.16667 NA Intergenic AluJb|SINE|Alu -12184 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 294-11 chr21 18903738 18904211 + 1.16667 NA Intergenic Intergenic -144162 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 211-23 chr2 21780265 21780590 + 1.16667 NA Intergenic Intergenic -69775 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 228.834-5 chr2 104441806 104442119 + 1.16667 NA intron (NR_015399, intron 1 of 3) intron (NR_015399, intron 1 of 3) 7615 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 223-33 chr3 115868097 115868403 + 1.16667 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) 36876 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 213.834-2 chr1 241606990 241607228 + 1.16667 NA intron (NM_014322, intron 1 of 3) L2c|LINE|L2 28821 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 230-30 chr3 89257849 89258336 + 1.16667 NA intron (NM_182644, intron 3 of 6) L1MC4|LINE|L1 150471 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 190.334 chr1 115959248 115959437 + 1.16667 NA intron (NR_125970, intron 2 of 4) intron (NR_125970, intron 2 of 4) -17171 NM_018420 55356 Hs.125482 NM_018420 ENSG00000163393 SLC22A15 FLIPT1|PRO34686 solute carrier family 22 member 15 protein-coding 327.334 chr12 30481862 30482351 + 1.16667 NA Intergenic Intergenic 195138 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 171.667-32 chr2 209368542 209368812 + 1.16667 NA Intergenic Intergenic -55370 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 363.001-3 chr5 68363073 68363636 + 1.16667 NA Intergenic AluSx|SINE|Alu 70777 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 318.667-12 chr5 112059554 112059994 + 1.16667 NA Intergenic Intergenic -82842 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 233.501-3 chr3 25230585 25230810 + 1.16667 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -110105 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 572.834-4 chr7 78039829 78040630 + 1.16667 NA intron (NM_001301128, intron 20 of 20) intron (NM_001301128, intron 20 of 20) 200099 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 182.334-6 chr6 133379872 133380136 + 1.16667 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 138505 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 202.334 chr1 205734269 205734476 + 1.16667 NA intron (NM_022731, intron 1 of 6) intron (NM_022731, intron 1 of 6) 15810 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 350.667-9 chr2 61694719 61695375 + 1.16667 NA Intergenic Intergenic -156691 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 283.334-5 chr18 75957941 75958369 + 1.16667 NA Intergenic L1MEd|LINE|L1 -164843 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 215.834-11 chr9 23892189 23892538 + 1.16667 NA Intergenic AluSx1|SINE|Alu -41762 NM_001351462 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 233.834-7 chr7 28928131 28928347 + 1.16667 NA Intergenic MIR|SINE|MIR 30091 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 302.167-10 chr2 192620812 192621455 + 1.16667 NA Intergenic L1M5|LINE|L1 -128712 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 184.333-4 chr1 174789831 174790197 + 1.16667 NA intron (NM_001366451, intron 3 of 12) AluSz6|SINE|Alu -9724 NM_001366456 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 225-36 chr7 66708073 66708315 + 1.16667 NA intron (NM_001367733, intron 2 of 9) L1M4|LINE|L1 26028 NM_001367740 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 186.334 chr1 208134085 208134319 + 1.16667 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 110182 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 163.5-32 chr4 39112071 39112415 + 1.16667 NA intron (NM_199039, intron 7 of 9) intron (NM_199039, intron 7 of 9) 50011 NM_015990 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 276.834-3 chr2 10660221 10660569 + 1.16667 NA intron (NR_048552, intron 8 of 19) AluSz|SINE|Alu 29580 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 201.334-7 chr17 57747775 57747957 + 1.16667 NA Intergenic L2b|LINE|L2 -2567 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 242.167-9 chr15 42951648 42951924 + 1.16667 NA intron (NM_174916, intron 45 of 46) AluJr|SINE|Alu -31008 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 256.5-2 chr10 76640338 76640735 + 1.16667 NA Intergenic Intergenic -247508 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 175.333-21 chr16 7122868 7123223 + 1.16667 NA intron (NM_018723, intron 4 of 15) L1ME1|LINE|L1 -209800 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 241.001-3 chr5 34704404 34704637 + 1.16667 NA intron (NM_001145525, intron 4 of 19) MIRb|SINE|MIR 16961 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 187.333-4 chr1 163561504 163561749 + 1.16667 NA Intergenic Intergenic -138435 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 211.667-3 chr1 118115960 118116193 + 1.16667 NA intron (NM_206996, intron 3 of 48) intron (NM_206996, intron 3 of 48) 69152 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 264.834-10 chr6 143518638 143518948 + 1.16667 NA Intergenic AluJb|SINE|Alu -7073 NM_032020 2519 Hs.17680 NM_032020 ENSG00000001036 FUCA2 dJ20N2.5 alpha-L-fucosidase 2 protein-coding 236.334-8 chr19 17629443 17630065 + 1.16667 NA intron (NM_001080421, intron 29 of 41) (AACCTC)n|Simple_repeat|Simple_repeat 58445 NM_001080421 23025 Hs.164502 NM_001080421 ENSG00000130477 UNC13A Munc13-1 unc-13 homolog A protein-coding 194-30 chr3 127572429 127572680 + 1.16667 NA non-coding (NR_073377, exon 10 of 10) non-coding (NR_073377, exon 10 of 10) 2777 NR_106883 102466199 NR_106883 ENSG00000275067 MIR6825 hsa-mir-6825 microRNA 6825 ncRNA 178.5-8 chr11 85375574 85375820 + 1.16667 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 251573 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 251.333-28 chr8 29326330 29326736 + 1.16667 NA Intergenic SATR1|Satellite|Satellite 22272 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 224.667-37 chr5 35703928 35704151 + 1.16667 NA intron (NM_024867, intron 16 of 36) intron (NM_024867, intron 16 of 36) 86176 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 400.167-9 chr8 134778261 134778960 + 1.16667 NA Intergenic L2c|LINE|L2 21997 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 189.167-32 chr5 153433363 153433735 + 1.16667 NA Intergenic Intergenic -56975 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 200.167-10 chr14 69382970 69383155 + 1.16667 NA intron (NM_004450, intron 3 of 3) intron (NM_004450, intron 3 of 3) 15237 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER ERH mRNA splicing and mitosis factor protein-coding 206.667-42 chr5 135787534 135787767 + 1.16667 NA intron (NM_001349335, intron 3 of 10) SATR2|Satellite|Satellite 15425 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 232.334 chr10 48254044 48254315 + 1.16667 NA intron (NM_001018071, intron 1 of 28) intron (NM_001018071, intron 1 of 28) -2422 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 298.5-14 chr20 52638863 52639254 + 1.16667 NA intron (NR_110038, intron 2 of 2) L2|LINE|L2 18220 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 386-6 chr4 40909709 40910150 + 1.16667 NA intron (NM_173075, intron 9 of 16) MIRb|SINE|MIR -52737 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 184.167-5 chr11 18327865 18328081 + 1.16667 NA intron (NM_001142307, intron 2 of 15) AluSg|SINE|Alu 5406 NM_005316 2965 Hs.577202 NM_005316 ENSG00000110768 GTF2H1 BTF2|P62|TFB1|TFIIH general transcription factor IIH subunit 1 protein-coding 479.167-4 chr8 123922224 123922848 + 1.16667 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 70549 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 228.334-2 chr11 116133528 116133795 + 1.16667 NA Intergenic Intergenic -373461 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 223.667-22 chr15 82787079 82787452 + 1.16667 NA exon (NM_001281806, exon 2 of 12) exon (NM_001281806, exon 2 of 12) 18804 NM_001281806 123722 Hs.719372 NM_001007122 ENSG00000186628 FSD2 SPRYD1 fibronectin type III and SPRY domain containing 2 protein-coding 372.5-12 chr3 148799286 148799634 + 1.16667 NA Intergenic Intergenic -28351 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 207.334-7 chr3 39561166 39561404 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR 59219 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 273.5-6 chr11 130492438 130492885 + 1.16667 NA Intergenic L1MCa|LINE|L1 43687 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 268.667-23 chr5 4874342 4874779 + 1.16667 NA Intergenic Intergenic 101079 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 429.167-2 chr11 47768111 47768722 + 1.16667 NA Intergenic Intergenic -1075 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 236.834-7 chr6 125202072 125202349 + 1.16667 NA intron (NM_001292026, intron 1 of 4) intron (NM_001292026, intron 1 of 4) -1501 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 185.667-36 chr5 36998257 36998539 + 1.16667 NA intron (NM_015384, intron 11 of 45) intron (NM_015384, intron 11 of 45) 121629 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 234.001 chr15 79634814 79635233 + 1.16667 NA Intergenic Intergenic 202507 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 204.334-5 chr22 39349431 39349610 + 1.16667 NA promoter-TSS (NM_004711) promoter-TSS (NM_004711) -429 NM_145731 9145 Hs.216226 NM_004711 ENSG00000100321 SYNGR1 - synaptogyrin 1 protein-coding 432.167-3 chr18 59994323 59994870 + 1.16667 NA Intergenic MER63A|DNA|hAT-Blackjack 94600 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 183.333-15 chr11 116732511 116732920 + 1.16667 NA Intergenic Intergenic 40272 NM_032725 84811 Hs.437341 NM_032725 ENSG00000137656 BUD13 Cwc26|fSAP71 BUD13 homolog protein-coding 271-35 chrX 26778057 26778466 + 1.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 219924 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 240.667-21 chr19 52472773 52473030 + 1.16667 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 19348 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 175.5-42 chr5 41912034 41912235 + 1.16667 NA exon (NM_175921, exon 5 of 6) exon (NM_175921, exon 5 of 6) 7790 NM_175921 285636 Hs.29899 NM_175921 ENSG00000205765 C5orf51 - chromosome 5 open reading frame 51 protein-coding 232.334-11 chr3 124492692 124492956 + 1.16667 NA exon (NM_001322990, exon 32 of 34) exon (NM_001322990, exon 32 of 34) -91834 NM_001322995 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 389.667-3 chr14 71553228 71553730 + 1.16667 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -32819 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 230.167-3 chr1 86470496 86470705 + 1.16667 NA intron (NM_001285, intron 1 of 13) intron (NM_001285, intron 1 of 13) 1673 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 255.167-4 chr1 153990380 153990676 + 1.16667 NA promoter-TSS (NM_001030) promoter-TSS (NM_001030) -227 NM_001349946 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 DBA17|MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 252.834-7 chr6 87504589 87504898 + 1.16667 NA intron (NM_001168398, intron 4 of 6) L3|LINE|CR1 31769 NM_006416 10559 Hs.423163 NM_006416 ENSG00000164414 SLC35A1 CDG2F|CMPST|CST|hCST solute carrier family 35 member A1 protein-coding 181-2 chr1 154478846 154479134 + 1.16667 NA TTS (NM_001010846) TTS (NM_001010846) -23229 NM_182499 126668 Hs.387671 NM_182499 ENSG00000163239 TDRD10 - tudor domain containing 10 protein-coding 275-21 chr3 104371626 104372085 + 1.16667 NA Intergenic L1MEf|LINE|L1 -847739 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 262.001-5 chr7 82542656 82543063 + 1.16667 NA Intergenic L2|LINE|L2 -98903 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 221.833-19 chr6 87674155 87674566 + 1.16667 NA TTS (NM_018064) TTS (NM_018064) 27873 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 328.834 chr10 28303022 28303361 + 1.16667 NA promoter-TSS (NM_001318170) promoter-TSS (NM_001318170) -127 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 179-9 chr11 79118532 79118769 + 1.16667 NA intron (NM_001098816, intron 4 of 33) L1MB3|LINE|L1 283459 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 456.834-2 chr12 27365839 27366333 + 1.16667 NA intron (NM_001248003, intron 1 of 14) L1ME3D|LINE|L1 33250 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 219.834-11 chr8 138817320 138817602 + 1.16667 NA intron (NM_152888, intron 7 of 64) LTR16C|LTR|ERVL 96580 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 231.834 chr1 34742898 34743106 + 1.16667 NA Intergenic Intergenic -12045 NM_005268 2709 Hs.198249 NM_005268 ENSG00000189280 GJB5 CX31.1 gap junction protein beta 5 protein-coding 412.001-4 chr4 76753139 76753657 + 1.16667 NA intron (NM_020859, intron 6 of 10) intron (NM_020859, intron 6 of 10) 144746 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 167-12 chr17 31437225 31437479 + 1.16667 NA intron (NM_032932, intron 3 of 14) intron (NM_032932, intron 3 of 14) 45677 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 239.667-8 chr10 104128049 104128391 + 1.16667 NA Intergenic Intergenic 6049 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 268.167-8 chr14 55044236 55044514 + 1.16667 NA 3' UTR (NM_080867, exon 2 of 2) 3' UTR (NM_080867, exon 2 of 2) -7272 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 201.167-5 chr10 63203459 63203828 + 1.16667 NA intron (NM_001322258, intron 9 of 24) intron (NM_001322258, intron 9 of 24) 65580 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 342.334-4 chr14 31356152 31356848 + 1.16667 NA intron (NM_015473, intron 16 of 35) AluJo|SINE|Alu 64050 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 210.334-5 chr15 45430200 45430433 + 1.16667 NA promoter-TSS (NM_197955) promoter-TSS (NM_197955) -213 NM_197955 84419 Hs.112242 NM_032413 ENSG00000166920 C15orf48 FOAP-11|MIR147BHG|NMES1 chromosome 15 open reading frame 48 protein-coding 209.833-3 chr1 185810129 185810446 + 1.16667 NA intron (NM_031935, intron 1 of 106) intron (NM_031935, intron 1 of 106) 75896 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 190-19 chr14 26778767 26778990 + 1.16667 NA intron (NR_110033, intron 3 of 3) intron (NR_110033, intron 3 of 3) -30470 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 313-6 chr3 70359491 70359937 + 1.16667 NA Intergenic Intergenic -47076 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 243.667-10 chr14 22114593 22114815 + 1.16667 NA Intergenic Intergenic 318049 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 170.667-36 chr5 81477140 81477325 + 1.16667 NA intron (NM_001256733, intron 5 of 15) L1MC4|LINE|L1 -83098 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 406.668 chr10 69222447 69222796 + 1.16667 NA intron (NM_025130, intron 1 of 17) intron (NM_025130, intron 1 of 17) 2289 NM_025130 80201 Hs.522988 NM_025130 ENSG00000156510 HKDC1 - hexokinase domain containing 1 protein-coding 206.667-20 chr17 58401401 58401645 + 1.16667 NA intron (NM_001305544, intron 2 of 9) intron (NM_001305544, intron 2 of 9) 1198 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 268.334-6 chr2 210178088 210178397 + 1.16667 NA Intergenic L1MD3|LINE|L1 -6833 NM_152519 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 287.167-18 chr7 88546479 88546905 + 1.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 -213008 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 269-9 chr14 29265161 29265509 + 1.16667 NA Intergenic Intergenic -479548 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 357.001 chr11 43706965 43707510 + 1.16667 NA intron (NM_016142, intron 1 of 10) L2a|LINE|L2 26499 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 232.5-13 chr2 76025303 76025889 + 1.16667 NA Intergenic L1PA16|LINE|L1 -314681 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 194.167-24 chr3 191963151 191963523 + 1.16667 NA Intergenic MER77B|LTR|ERVL -275293 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 235.334 chr14 60651887 60652231 + 1.16667 NA Intergenic Intergenic -2582 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 188.167-34 chr6 122285331 122285560 + 1.16667 NA Intergenic MIR3|SINE|MIR -114106 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 207.334-4 chr19 36214653 36215044 + 1.16667 NA promoter-TSS (NM_152477) promoter-TSS (NM_152477) -175 NM_152477 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 269.501-2 chr12 62537625 62537869 + 1.16667 NA intron (NM_001278469, intron 16 of 35) intron (NM_001278469, intron 16 of 35) 65687 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 379.5-9 chr5 180039675 180040342 + 1.16667 NA intron (NM_001280801, intron 2 of 7) intron (NM_001280801, intron 2 of 7) -24611 NR_029885 442908 NR_029885 ENSG00000198995 MIR340 MIRN340|hsa-mir-340|mir-340 microRNA 340 ncRNA 187.667-4 chr10 13993308 13993541 + 1.16667 NA intron (NM_018027, intron 2 of 24) L4_C_Mam|LINE|RTE-X 15126 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 217.167-4 chr1 235731155 235731480 + 1.16667 NA intron (NM_000081, intron 34 of 52) intron (NM_000081, intron 34 of 52) -80563 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 336.834-3 chr2 48361342 48361863 + 1.16667 NA intron (NM_002158, intron 4 of 6) intron (NM_002158, intron 4 of 6) 46920 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 205.334-13 chr8 79690475 79690663 + 1.16667 NA Intergenic Intergenic 75906 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 202-34 chr7 12456985 12457263 + 1.16667 NA Intergenic AluSx|SINE|Alu -39305 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 267.167-16 chr9 37469824 37470290 + 1.16667 NA Intergenic L1M5|LINE|L1 -4607 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 254.667-23 chr3 129399443 129399789 + 1.16667 NA promoter-TSS (NR_003111) promoter-TSS (NR_003111) -177 NR_003111 132241 Hs.477537 NR_003111 ENSG00000251474 RPL32P3 - ribosomal protein L32 pseudogene 3 pseudo 216.834-12 chr6 83094968 83095301 + 1.16667 NA intron (NM_015018, intron 1 of 38) AluSz|SINE|Alu 27468 NM_015018 23033 Hs.520246 NM_015018 ENSG00000083097 DOP1A DOP1|DOPEY1|KIAA1117|dJ202D23.2 DOP1 leucine zipper like protein A protein-coding 213.167 chr1 103222774 103223061 + 1.16667 NA Intergenic L1M5|LINE|L1 -114395 NM_080630 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 285.334-8 chr7 84549584 84549990 + 1.16667 NA intron (NR_110079, intron 2 of 2) intron (NR_110079, intron 2 of 2) 17311 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 344.667-5 chr12 11940623 11941111 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -108994 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 193.167-22 chr3 140859602 140859847 + 1.16667 NA Intergenic MIRb|SINE|MIR -82112 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 203.667-47 chr7 38694785 38695019 + 1.16667 NA Intergenic Intergenic -7813 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 205-4 chr11 81823311 81823595 + 1.16667 NA Intergenic Intergenic 67383 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 230-42 chr9 1604938 1605401 + 1.16667 NA Intergenic Tigger16a|DNA|TcMar-Tigger -410178 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 329.334-2 chr10 96301511 96301950 + 1.16667 NA Intergenic LTR50|LTR|ERVL -2704 NM_001017520 1791 Hs.534206 NM_004088 ENSG00000107447 DNTT TDT DNA nucleotidylexotransferase protein-coding 271.334-7 chr19 27833634 27834338 + 1.16667 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -40046 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 237-7 chr11 62883801 62884065 + 1.16667 NA intron (NM_001012664, intron 4 of 9) intron (NM_001012664, intron 4 of 9) 2234 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 335.834-9 chr3 69309734 69310239 + 1.16667 NA intron (NM_015123, intron 3 of 22) intron (NM_015123, intron 3 of 22) 76102 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 317.834-2 chr2 109361760 109362131 + 1.16667 NA intron (NM_001099289, intron 2 of 9) L1MC1|LINE|L1 -48320 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 416.667-6 chr19 48787904 48788441 + 1.16667 NA Intergenic AluSx1|SINE|Alu 22857 NM_001164773 587 Hs.512670 NM_001190 ENSG00000105552 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino acid transaminase 2 protein-coding 198.167-20 chr21 16536717 16537123 + 1.16667 NA intron (NR_136547, intron 1 of 2) intron (NR_136547, intron 1 of 2) 1348 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 249.834-4 chr11 95716464 95716744 + 1.16667 NA Intergenic Intergenic 73178 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 238.667-23 chr6 94541128 94541571 + 1.16667 NA Intergenic Intergenic 823046 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 278.167-28 chr8 17913366 17913796 + 1.16667 NA Intergenic HERVK-int|LTR|ERVK -9276 NM_001315508 5108 Hs.491148 NM_006197 ENSG00000078674 PCM1 PTC4|RET/PCM-1 pericentriolar material 1 protein-coding 240.667-33 chr7 130960077 130960498 + 1.16667 NA intron (NR_109852, intron 4 of 5) intron (NR_109852, intron 4 of 5) 46823 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 180-55 chr7 2159556 2159876 + 1.16667 NA intron (NM_001013837, intron 10 of 18) intron (NM_001013837, intron 10 of 18) -70664 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 234.001-2 chr8 103871921 103872316 + 1.16667 NA intron (NR_145711, intron 1 of 21) MER63B|DNA|hAT-Blackjack 52898 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 185.167-25 chr6 137975864 137976078 + 1.16667 NA Intergenic Intergenic -30171 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 365.667-2 chr12 69070556 69070973 + 1.16667 NA Intergenic LTR53|LTR|ERVL -107524 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 188.5-22 chr2 127139755 127139954 + 1.16667 NA Intergenic Intergenic -32700 NM_139343 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 220.167-5 chr11 95919941 95920343 + 1.16667 NA intron (NM_001243571, intron 1 of 17) MamRTE1|LINE|RTE-BovB 3965 NM_001243571 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 269.501-3 chr19 44565894 44566155 + 1.16667 NA Intergenic L1MD2|LINE|L1 -9107 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 331.334-4 chr2 238354471 238354958 + 1.16667 NA intron (NM_001139490, intron 12 of 14) AluSx3|SINE|Alu 34170 NM_001139490 26146 Hs.631898 NM_015650 ENSG00000204104 TRAF3IP1 IFT54|MIP-T3|MIPT3|SLSN9 TRAF3 interacting protein 1 protein-coding 231.834-2 chr1 61041390 61041688 + 1.16667 NA Intergenic Intergenic -35688 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 193.334-10 chr4 10611863 10612187 + 1.16667 NA intron (NM_052964, intron 2 of 18) intron (NM_052964, intron 2 of 18) 72743 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 348.167-3 chr14 43786440 43786818 + 1.16667 NA Intergenic LTR1|LTR|ERV1 720654 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 304.334-6 chr2 170277572 170278050 + 1.16667 NA intron (NM_001083615, intron 7 of 33) L1ME4a|LINE|L1 73132 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 204.334-3 chr17 62104770 62105054 + 1.16667 NA Intergenic AluSq2|SINE|Alu -39634 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 203-5 chr10 73622123 73622643 + 1.16667 NA intron (NM_001350995, intron 1 of 21) AluSz|SINE|Alu 3598 NM_001350995 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 253-24 chr4 26458993 26459321 + 1.16667 NA Intergenic AluSx|SINE|Alu 31327 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 175.5-4 chr1 182544500 182544794 + 1.16667 NA intron (NM_001366934, intron 16 of 22) L1MA4|LINE|L1 44609 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 340.834-6 chr3 5280418 5280751 + 1.16667 NA Intergenic Intergenic -30329 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 170.834-3 chr2 119326089 119326290 + 1.16667 NA intron (NM_001322330, intron 2 of 5) L1MEc|LINE|L1 40553 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 423.667-4 chr17 31126890 31127501 + 1.16667 NA intron (NM_001042492, intron 1 of 57) L1ME3D|LINE|L1 32218 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 310.667-14 chr3 88065098 88065495 + 1.16667 NA intron (NM_001366093, intron 1 of 7) intron (NM_001366093, intron 1 of 7) 6041 NM_001350136 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 597.5-3 chr14 103393862 103394710 + 1.16667 NA intron (NM_001128920, intron 1 of 15) intron (NM_001128920, intron 1 of 15) 8871 NM_001128918 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a|VIPB microtubule affinity regulating kinase 3 protein-coding 279.167-2 chr1 87085768 87086166 + 1.16667 NA intron (NM_012262, intron 3 of 6) intron (NM_012262, intron 3 of 6) -43798 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 222.5-2 chr1 152182530 152182889 + 1.16667 NA Intergenic Intergenic -23481 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 327.5-13 chr2 59816703 59817102 + 1.16667 NA Intergenic Intergenic 566134 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 249.167-9 chr17 56129655 56130322 + 1.16667 NA Intergenic Intergenic -23487 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 166.833-25 chr4 94412112 94412383 + 1.16667 NA Intergenic Intergenic -39610 NM_001011516 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 219-32 chr7 92273027 92273413 + 1.16667 NA intron (NM_019004, intron 1 of 19) MLT1L|LTR|ERVL-MaLR -27120 NM_001350681 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 254.667-35 chr9 102048942 102049409 + 1.16667 NA Intergenic L1M2|LINE|L1 -310595 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 221.334 chr1 106642798 106643116 + 1.16667 NA Intergenic Intergenic -175282 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 194.333-34 chr8 62765731 62766064 + 1.16667 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -211964 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 242.167-19 chr20 38842116 38842455 + 1.16667 NA intron (NM_015568, intron 2 of 10) intron (NM_015568, intron 2 of 10) 36588 NM_015568 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 248.834-7 chr5 79187389 79187633 + 1.16667 NA Intergenic AluSx|SINE|Alu -48620 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 270.834-8 chr5 8905606 8905960 + 1.16667 NA Intergenic Intergenic 66051 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 410.333-2 chr3 104604034 104604779 + 1.16667 NA Intergenic LTR16C|LTR|ERVL -762307 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 216.667-52 chr9 26824686 26825049 + 1.16667 NA Intergenic Intergenic 67935 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 242.167-20 chr22 40436779 40437122 + 1.16667 NA intron (NM_020831, intron 4 of 14) intron (NM_020831, intron 4 of 14) 26490 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 240.667-29 chr4 109921325 109921743 + 1.16667 NA intron (NM_001357021, intron 1 of 19) intron (NM_001357021, intron 1 of 19) 8651 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 344.667-14 chr7 124784949 124785618 + 1.16667 NA intron (NM_001024603, intron 2 of 3) intron (NM_001024603, intron 2 of 3) 5527 NM_001024603 154872 Hs.444163 NM_001024603 ENSG00000275356 C7orf77 - chromosome 7 open reading frame 77 protein-coding 375.667 chr1 152179129 152179593 + 1.16667 NA Intergenic Intergenic -20133 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 230.667 chr1 34234594 34234862 + 1.16667 NA Intergenic L2a|LINE|L2 57821 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 530.501 chr20 38893744 38894603 + 1.16667 NA intron (NM_015568, intron 3 of 10) intron (NM_015568, intron 3 of 10) -32244 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 220.001-3 chr4 74234996 74235200 + 1.16667 NA intron (NM_001144978, intron 6 of 7) intron (NM_001144978, intron 6 of 7) -73372 NM_001270993 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 239.834 chr11 113074366 113074807 + 1.16667 NA intron (NM_181351, intron 1 of 18) MER3|DNA|hAT-Charlie -111126 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 216.167-11 chr11 96164676 96164965 + 1.16667 NA intron (NM_032427, intron 1 of 4) L3|LINE|CR1 -176618 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 222.5-30 chr5 146049361 146049656 + 1.16667 NA intron (NM_152550, intron 7 of 9) MIRc|SINE|MIR 56069 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 198.167-12 chr13 100213090 100213381 + 1.16667 NA intron (NR_148031, intron 7 of 22) L1MA3|LINE|L1 124142 NR_148030 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 165.667-8 chr10 70170548 70170917 + 1.16667 NA promoter-TSS (NM_001142648) promoter-TSS (NM_001142648) -218 NM_001142648 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 409.667-10 chr9 38641881 38642826 + 1.16667 NA Intergenic Intergenic 21265 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 175.667-13 chr12 24324217 24324412 + 1.16667 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 101043 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 180.5-5 chr1 160344626 160344878 + 1.16667 NA exon (NM_001349729, exon 2 of 16) exon (NM_001349729, exon 2 of 16) 1369 NM_001290186 23385 Hs.517249 NM_015331 ENSG00000162736 NCSTN ATAG1874 nicastrin protein-coding 345.167-13 chr8 131237915 131238486 + 1.16667 NA Intergenic Intergenic -197291 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 259.5-8 chr12 121500097 121500454 + 1.16667 NA intron (NM_001005366, intron 11 of 22) intron (NM_001005366, intron 11 of 22) -55923 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 323.834-3 chr17 71252760 71253061 + 1.16667 NA Intergenic MIRb|SINE|MIR -50731 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 195 chr1 11352826 11353161 + 1.16667 NA Intergenic LTR16A2|LTR|ERVL 79795 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 166.667-52 chr8 110767751 110768030 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 259543 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 381.833-7 chrX 17945069 17945524 + 1.16667 NA Intergenic L1ME3|LINE|L1 -83959 NM_001172743 10742 Hs.446680 NM_021785 ENSG00000131831 RAI2 - retinoic acid induced 2 protein-coding 256.834-5 chr4 84145610 84145900 + 1.16667 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 153414 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 240.5-5 chr13 45162045 45162417 + 1.16667 NA intron (NM_004128, intron 4 of 7) intron (NM_004128, intron 4 of 7) 38814 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 313.167-12 chr4 120534739 120535336 + 1.16667 NA Intergenic L1MC1|LINE|L1 387829 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 166.834-6 chrX 36531272 36531490 + 1.16667 NA Intergenic Intergenic -91089 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 236.834-6 chr21 27352866 27353228 + 1.16667 NA Intergenic Charlie10|DNA|hAT-Charlie -369332 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 214.167-31 chr8 68148262 68148526 + 1.16667 NA intron (NM_024870, intron 34 of 39) intron (NM_024870, intron 34 of 39) -181979 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 169.333-58 chr7 86442131 86442399 + 1.16667 NA Intergenic Intergenic -201644 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 290.667-15 chr4 43080829 43081194 + 1.16667 NA Intergenic MER4-int|LTR|ERV1 187745 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 300.834-9 chr22 40347701 40348145 + 1.16667 NA intron (NM_001363840, intron 1 of 13) intron (NM_001363840, intron 1 of 13) 1423 NM_001363840 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 324.501 chr12 22899472 22899972 + 1.16667 NA Intergenic Intergenic 274551 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 176.5-17 chr2 117414208 117414486 + 1.16667 NA Intergenic L1PB1|LINE|L1 -400344 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 300.667-13 chr5 2017680 2018420 + 1.16667 NA Intergenic Intergenic 130719 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 165.834-4 chr16 7632518 7632705 + 1.16667 NA intron (NM_145893, intron 8 of 13) intron (NM_145893, intron 8 of 13) 299766 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 177.833-14 chr17 48826066 48826359 + 1.16667 NA Intergenic (T)n|Simple_repeat|Simple_repeat -4823 NM_001261395 10241 Hs.514920 NM_005831 ENSG00000136436 CALCOCO2 NDP52 calcium binding and coiled-coil domain 2 protein-coding 233-15 chr20 34761188 34761608 + 1.16667 NA intron (NM_001242539, intron 3 of 11) L1ME4b|LINE|L1 21006 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 212.5-33 chr7 35771712 35772019 + 1.16667 NA intron (NR_120511, intron 3 of 5) L2a|LINE|L2 28760 NR_120512 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 183.334-7 chr3 113736436 113736611 + 1.16667 NA intron (NM_025146, intron 1 of 4) intron (NM_025146, intron 1 of 4) 9726 NM_001308445 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 200-18 chr18 45966516 45966759 + 1.16667 NA intron (NM_020964, intron 1 of 43) intron (NM_020964, intron 1 of 43) 692 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 306.834-5 chr20 41028470 41028842 + 1.16667 NA promoter-TSS (NM_003286) promoter-TSS (NM_003286) -166 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 522.834-4 chr8 84445327 84446111 + 1.16667 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 30235 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 274.833 chr1 89634022 89634754 + 1.16667 NA intron (NM_032270, intron 1 of 2) intron (NM_032270, intron 1 of 2) 1268 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 336.167-2 chr12 93885223 93885625 + 1.16667 NA intron (NR_135147, intron 3 of 3) intron (NR_135147, intron 3 of 3) 58182 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 296.667-9 chr2 33907416 33907728 + 1.16667 NA intron (NR_126403, intron 2 of 5) L1MA8|LINE|L1 -159654 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 268.167-5 chr11 39106785 39107197 + 1.16667 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 458133 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 174.667-53 chr8 13561438 13561646 + 1.16667 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) -5327 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 193.167-12 chr14 74869805 74870057 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -6097 NM_001243007 283571 Hs.675293 NM_001080408 ENSG00000119608 PROX2 PROX-2 prospero homeobox 2 protein-coding 191.501 chr2 54337741 54337917 + 1.16667 NA intron (NM_001100396, intron 2 of 4) intron (NM_001100396, intron 2 of 4) 6945 NM_001369403 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 300.334 chr10 87657423 87657885 + 1.16667 NA Intergenic MIR3|SINE|MIR -2224 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 229.834 chr17 82552046 82552394 + 1.16667 NA intron (NM_004514, intron 1 of 8) L1MC4|LINE|L1 32488 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 340.833-10 chr5 90165822 90166403 + 1.16667 NA intron (NR_120601, intron 4 of 5) intron (NR_120601, intron 4 of 5) 123959 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 332.834-5 chrX 53317084 53317474 + 1.16667 NA intron (NM_001111125, intron 1 of 14) intron (NM_001111125, intron 1 of 14) 4071 NM_001111125 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 226.333-14 chr3 10940781 10941177 + 1.16667 NA TTS (NM_014229) TTS (NM_014229) -51755 NM_001348252 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 296.501-2 chr4 102722495 102722773 + 1.16667 NA intron (NM_005908, intron 4 of 16) intron (NM_005908, intron 4 of 16) 38334 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 210.167-26 chr5 35987519 35987787 + 1.16667 NA intron (NM_001171873, intron 3 of 5) intron (NM_001171873, intron 3 of 5) 3737 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 234.667-24 chr4 83761298 83761711 + 1.16667 NA Intergenic Charlie5|DNA|hAT-Charlie 225396 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 310.667-20 chr6 166051664 166052077 + 1.16667 NA Intergenic L1ME1|LINE|L1 -45850 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 337-11 chr8 80352114 80352492 + 1.16667 NA Intergenic AluSx|SINE|Alu 110914 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 327.667-16 chr6 65187996 65188389 + 1.16667 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -113226 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 197.5-15 chr19 40604738 40604963 + 1.16667 NA intron (NM_001042545, intron 1 of 29) intron (NM_001042545, intron 1 of 29) 3481 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 221.5-18 chr4 87213445 87213751 + 1.16667 NA intron (NM_001292006, intron 1 of 9) MIR|SINE|MIR 6670 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 249.834-3 chr11 27211310 27211635 + 1.16667 NA intron (NR_125767, intron 2 of 4) MIRb|SINE|MIR 7296 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 211.334-3 chr12 65495069 65495322 + 1.16667 NA intron (NR_120431, intron 3 of 3) intron (NR_120431, intron 3 of 3) 62116 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 304.501-3 chr2 79770748 79771112 + 1.16667 NA intron (NM_001282598, intron 3 of 17) MIRb|SINE|MIR 95653 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 198.667-45 chr7 102899276 102899611 + 1.16667 NA intron (NR_105043, intron 12 of 20) intron (NR_105043, intron 12 of 20) -13557 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 229.5-34 chr5 171329834 171330149 + 1.16667 NA Intergenic MIRc|SINE|MIR 20743 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 289.667-4 chr10 91380893 91381196 + 1.16667 NA intron (NR_024467, intron 3 of 4) MamRep605|LTR?|LTR? -28191 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 210.167-10 chr12 126668815 126669036 + 1.16667 NA intron (NR_110034, intron 1 of 2) intron (NR_110034, intron 1 of 2) 21393 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 233.5-20 chr20 15475153 15475505 + 1.16667 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 278489 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 209.834-4 chr2 145457426 145457889 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 789690 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 368.167-7 chr5 34816437 34816963 + 1.16667 NA intron (NM_015577, intron 12 of 17) intron (NM_015577, intron 12 of 17) -22464 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 439.001-2 chr2 202878982 202879601 + 1.16667 NA Intergenic AluSx3|SINE|Alu -7525 NM_001288622 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 206.667-35 chr3 15972830 15973152 + 1.16667 NA Intergenic MER8|DNA|TcMar-Tigger 99220 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 218.667 chr1 110791118 110791393 + 1.16667 NA Intergenic Intergenic -79944 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 194.167-19 chr2 50243700 50244418 + 1.16667 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 103695 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 295-14 chr22 28345957 28346275 + 1.16667 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR -113753 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 280.667-12 chr3 135991829 135992282 + 1.16667 NA intron (NM_001190447, intron 1 of 12) (TATTT)n|Simple_repeat|Simple_repeat 26327 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 282.5-9 chr20 22832999 22833575 + 1.16667 NA Intergenic L1MC1|LINE|L1 -147943 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 240.833-7 chr19 34120976 34121282 + 1.16667 NA Intergenic L1MEf|LINE|L1 -51375 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 226.834-12 chr5 138132656 138132961 + 1.16667 NA intron (NM_003551, intron 2 of 5) intron (NM_003551, intron 2 of 5) 6620 NM_003551 8382 Hs.730856 NM_003551 ENSG00000112981 NME5 NM23-H5|NM23H5|RSPH23 NME/NM23 family member 5 protein-coding 193.833-21 chr3 107424728 107425359 + 1.16667 NA Intergenic Intergenic -5887 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 248.333-14 chr17 44041412 44041860 + 1.16667 NA intron (NM_001369486, intron 1 of 3) intron (NM_001369486, intron 1 of 3) -18485 NM_001304813 84336 Hs.514211 NM_032376 ENSG00000091947 TMEM101 - transmembrane protein 101 protein-coding 304.334-12 chr7 80017894 80018299 + 1.16667 NA Intergenic Intergenic -116735 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 227.667-3 chr1 192457900 192458277 + 1.16667 NA Intergenic Intergenic -117685 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 288.834-8 chr7 7805061 7805472 + 1.16667 NA intron (NM_001302350, intron 4 of 4) L2a|LINE|L2 -86659 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 407.833 chr10 53602290 53602956 + 1.16667 NA Intergenic L1MA3|LINE|L1 -830923 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 250.501-4 chr6 27159825 27160101 + 1.16667 NA Intergenic Intergenic 12337 NR_036096 100422934 NR_036096 ENSG00000265565 MIR3143 mir-3143 microRNA 3143 ncRNA 172.667-17 chr14 70953390 70953577 + 1.16667 NA intron (NM_014982, intron 2 of 35) L1ME3D|LINE|L1 46024 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 317.334-4 chr17 65557004 65557451 + 1.16667 NA intron (NM_001363813, intron 2 of 9) intron (NM_001363813, intron 2 of 9) 4421 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 188.833-31 chr5 3892484 3892690 + 1.16667 NA Intergenic L1PA4|LINE|L1 296755 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 222.501 chr11 72535332 72535536 + 1.16667 NA Intergenic Intergenic -35222 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 196-36 chr5 61302728 61302908 + 1.16667 NA Intergenic Intergenic -29440 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 271.167-16 chr3 72445760 72446150 + 1.16667 NA intron (NM_012234, intron 1 of 3) intron (NM_012234, intron 1 of 3) 668 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 337.334-4 chr8 101123228 101123649 + 1.16667 NA Intergenic Intergenic 71384 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 347.001-3 chr3 71870597 71871020 + 1.16667 NA Intergenic L1ME1|LINE|L1 -85660 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 280.333 chr1 34267308 34267757 + 1.16667 NA Intergenic Intergenic 90625 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 454.667-7 chr5 158174830 158175337 + 1.16667 NA Intergenic Intergenic 234690 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 200.501 chr12 2571481 2571669 + 1.16667 NA intron (NM_199460, intron 13 of 49).2 intron (NM_199460, intron 13 of 49).2 100645 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 259.833-9 chr18 34313794 34314125 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL -90408 NM_001353232 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 302.167-15 chr8 95547315 95547771 + 1.16667 NA intron (NR_038207, intron 2 of 2) L1PA7|LINE|L1 -278342 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 403.167 chr17 73232148 73232615 + 1.16667 NA promoter-TSS (NM_032837) promoter-TSS (NM_032837) 13 NM_001289410 84923 Hs.741276 NM_032837 ENSG00000133193 FAM104A - family with sequence similarity 104 member A protein-coding 207.5-9 chr11 62713148 62713753 + 1.16667 NA 3' UTR (NM_001079559, exon 14 of 14) 3' UTR (NM_001079559, exon 14 of 14) -3831 NR_037949 26580 Hs.533709 NM_032667 ENSG00000168000 BSCL2 GNG3LG|HMN5|PELD|SPG17 BSCL2 lipid droplet biogenesis associated, seipin protein-coding 234-36 chr8 63057213 63057579 + 1.16667 NA Intergenic Intergenic -18590 NM_003878 8836 Hs.78619 NM_003878 ENSG00000137563 GGH GH gamma-glutamyl hydrolase protein-coding 170.333-20 chr14 74860561 74860774 + 1.16667 NA intron (NM_001243007, intron 1 of 3) MamTip2|DNA|hAT-Tip100 3167 NM_001080408 283571 Hs.675293 NM_001080408 ENSG00000119608 PROX2 PROX-2 prospero homeobox 2 protein-coding 558.333-2 chr12 14418329 14419582 + 1.16667 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 33674 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 190-48 chr7 141877817 141878052 + 1.16667 NA Intergenic L1P4a|LINE|L1 -36449 NM_001370403 136242 Hs.98947 NM_001008270 ENSG00000165076 PRSS37 TRYX2 serine protease 37 protein-coding 210.167-15 chr17 60035611 60035840 + 1.16667 NA Intergenic L1MD2|LINE|L1 7380 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 236.334-2 chr11 74953497 74953747 + 1.16667 NA intron (NM_014752, intron 1 of 4) intron (NM_014752, intron 1 of 4) 4356 NM_014752 9789 Hs.282700 NM_014752 ENSG00000118363 SPCS2 - signal peptidase complex subunit 2 protein-coding 242-14 chr2 36829026 36829366 + 1.16667 NA Intergenic L1MEf|LINE|L1 132489 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 199.5-42 chr7 115418843 115419120 + 1.16667 NA Intergenic L1MCa|LINE|L1 162460 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 335.001-5 chr6 73519133 73519520 + 1.16667 NA promoter-TSS (NR_132980).2 promoter-TSS (NR_132980).2 -888 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 301.001 chr2 136787525 136788046 + 1.16667 NA intron (NM_001316349, intron 1 of 27) MLT1I|LTR|ERVL-MaLR 22240 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 305.333-8 chr3 48903662 48904121 + 1.16667 NA Intergenic FLAM_C|SINE|Alu -5009 NM_000387 788 Hs.13845 NM_000387 ENSG00000178537 SLC25A20 CAC|CACT solute carrier family 25 member 20 protein-coding 183.5-21 chr2 155628729 155628969 + 1.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR 626082 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 295-11 chr19 8353698 8354391 + 1.16667 NA Intergenic Intergenic -10111 NM_001039667 51129 Hs.9613 NM_016109 ENSG00000167772 ANGPTL4 ARP4|FIAF|HARP|HFARP|NL2|PGAR|TGQTL|UNQ171|pp1158 angiopoietin like 4 protein-coding 188.667-52 chr8 121005543 121005749 + 1.16667 NA Intergenic LTR16B2|LTR|ERVL -193600 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 310-5 chr11 37190509 37191004 + 1.16667 NA Intergenic MLT2B3|LTR|ERVL -592477 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 170.833-12 chr17 48724617 48725087 + 1.16667 NA promoter-TSS (NR_036150) promoter-TSS (NR_036150) -377 NR_036150 100422978 NR_036150 ENSG00000263602 MIR3185 - microRNA 3185 ncRNA 360.667-12 chr8 101335881 101336216 + 1.16667 NA Intergenic Intergenic -32845 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 199-13 chr15 78477432 78477703 + 1.16667 NA TTS (NM_001320943) TTS (NM_001320943) -29997 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 445.333-6 chr18 22630279 22630846 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 156275 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 181.334-8 chr4 131381666 131381883 + 1.16667 NA Intergenic L1MEd|LINE|L1 -383064 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 254.834-2 chr15 89201092 89201373 + 1.16667 NA 3' UTR (NM_152924, exon 11 of 11) 3' UTR (NM_152924, exon 11 of 11) 20347 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 491.667-3 chr2 230849877 230850791 + 1.16667 NA Intergenic L2a|LINE|L2 -13851 NM_001287240 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 369.501 chr10 68231100 68231571 + 1.16667 NA exon (NM_145178, exon 1 of 1) exon (NM_145178, exon 1 of 1) 778 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 200.167-22 chr6 103451000 103451219 + 1.16667 NA Intergenic L2|LINE|L2 1408437 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 299.834-10 chr3 148902928 148903413 + 1.16667 NA Intergenic MIRc|SINE|MIR 37874 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 165.834-6 chr4 77480742 77481112 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -30826 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 215.167-31 chr7 135359658 135359931 + 1.16667 NA Intergenic Intergenic 127815 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 230-38 chr7 11764724 11765085 + 1.16667 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 67294 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 236.5-31 chr6 52469206 52469481 + 1.16667 NA exon (NM_018100, exon 7 of 11) exon (NM_018100, exon 7 of 11) 48335 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 181.167-6 chr10 62060552 62060772 + 1.16667 NA intron (NM_001244638, intron 4 of 6) intron (NM_001244638, intron 4 of 6) 11305 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 225.667-7 chr12 113296072 113296370 + 1.16667 NA 3' UTR (NM_001351346, exon 29 of 29) 3' UTR (NM_001351346, exon 29 of 29) 4698 NR_106820 102465457 NR_106820 ENSG00000274822 MIR6762 hsa-mir-6762 microRNA 6762 ncRNA 339.667-7 chr13 29450913 29451541 + 1.16667 NA intron (NM_015233, intron 2 of 8) L1MD|LINE|L1 22567 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 296.5-16 chr18 7817324 7817770 + 1.16667 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 250231 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 287.501 chr2 40757308 40757618 + 1.16667 NA Intergenic Intergenic -245028 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 250.5-7 chr11 47858103 47858593 + 1.16667 NA Intergenic Intergenic -9804 NM_001318399 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 268.334-8 chr3 112555110 112555520 + 1.16667 NA intron (NM_001278712, intron 2 of 10) intron (NM_001278712, intron 2 of 10) -6005 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 250.667-47 chrX 5113296 5113808 + 1.16667 NA Intergenic Intergenic -479980 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 226.834-6 chr2 118503321 118503608 + 1.16667 NA Intergenic Intergenic 99502 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 316.5-10 chr14 61855606 61856193 + 1.16667 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 43196 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 277.334-5 chr5 90827490 90828194 + 1.16667 NA intron (NR_003149, intron 76 of 89) intron (NR_003149, intron 76 of 89) 269045 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 310.5-11 chr20 45266888 45267375 + 1.16667 NA Intergenic Intergenic -12567 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 252-7 chr1 206017883 206018279 + 1.16667 NA intron (NM_148964, intron 4 of 7) L1ME3A|LINE|L1 5814 NM_148964 1510 Hs.644082 NM_001910 ENSG00000196188 CTSE CATE cathepsin E protein-coding 199.834-6 chr20 54529025 54529339 + 1.16667 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 53589 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 193-29 chr4 135726364 135726722 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 161550 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 306.167-10 chrX 111098957 111099251 + 1.16667 NA intron (NM_001324326, intron 2 of 15) intron (NM_001324326, intron 2 of 15) 2913 NM_001324327 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 271.334-16 chr8 68029673 68030043 + 1.16667 NA intron (NM_024870, intron 5 of 39) intron (NM_024870, intron 5 of 39) 77812 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 198.5-24 chr2 113084081 113084360 + 1.16667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 11902 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 262.5-12 chr16 6090531 6090945 + 1.16667 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 71035 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 191.167-10 chr14 55601428 55601956 + 1.16667 NA intron (NM_004986, intron 1 of 41) intron (NM_004986, intron 1 of 41) 21485 NR_073128 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 307.167-6 chr10 123564845 123565219 + 1.16667 NA Intergenic MLT2A2|LTR|ERVL -101323 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 193.667-41 chr4 89598344 89598541 + 1.16667 NA Intergenic Intergenic -237959 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 356.333-4 chr15 64690724 64691163 + 1.16667 NA intron (NM_001301302, intron 2 of 4) MIRb|SINE|MIR 12338 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 237.834-10 chr8 17118996 17119217 + 1.16667 NA intron (NR_146233, intron 15 of 15) MIRb|SINE|MIR -37376 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 164.334-2 chr12 111481522 111481662 + 1.16667 NA intron (NR_132311, intron 17 of 23) L1M4|LINE|L1 46730 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 216-27 chr2 170660625 170660915 + 1.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR 53797 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 225-25 chr3 67819261 67819585 + 1.16667 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 164726 NR_109993 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 264.501 chr17 73255169 73255424 + 1.16667 NA intron (NM_001129885, intron 3 of 5) AluSx|SINE|Alu 6584 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 210.834-7 chr5 158057380 158057621 + 1.16667 NA Intergenic AluJr|SINE|Alu -198355 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 284.667-2 chr1 89262501 89262914 + 1.16667 NA exon (NM_052942, exon 10 of 12) exon (NM_052942, exon 10 of 12) 10153 NM_001134486 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 225.834-13 chrX 128290366 128290654 + 1.16667 NA Intergenic L1MA1|LINE|L1 -238107 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 181.5-26 chr2 191812610 191812774 + 1.16667 NA intron (NR_157850, intron 3 of 4) intron (NR_157850, intron 3 of 4) 19852 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 354.501-2 chr4 90893949 90894324 + 1.16667 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 659105 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 217.5-24 chr7 35784881 35785142 + 1.16667 NA intron (NR_120511, intron 2 of 5) intron (NR_120511, intron 2 of 5) 15614 NR_120512 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 402.334 chr1 95234688 95235175 + 1.16667 NA promoter-TSS (NR_125948) promoter-TSS (NR_125948) 721 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 305-14 chr5 40085555 40086006 + 1.16667 NA Intergenic L1MDa|LINE|L1 33489 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 250.334-2 chr11 12961750 12962382 + 1.16667 NA Intergenic A-rich|Low_complexity|Low_complexity 27482 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 360-3 chr11 81144276 81144776 + 1.16667 NA Intergenic MER117|DNA|hAT-Charlie -381723 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 232.334-6 chr19 35740680 35740976 + 1.16667 NA intron (NR_144338, intron 2 of 4) CpG-14298 1624 NR_144339 79713 Hs.352548 NM_024660 ENSG00000126246 IGFLR1 TMEM149 IGF like family receptor 1 protein-coding 204.667-16 chr17 59537720 59537977 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -10991 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 252.667-14 chr2 115566471 115566849 + 1.16667 NA intron (NM_001321912, intron 6 of 25) L1MC4|LINE|L1 222845 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 244-21 chr3 127660004 127660306 + 1.16667 NA intron (NM_015720, intron 2 of 7) intron (NM_015720, intron 2 of 7) -12783 NR_033429 80325 Hs.107812 NM_032548 ENSG00000114626 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP|PP2259 ankyrin repeat and BTB domain containing 1 protein-coding 193.334-3 chr1 209601718 209602201 + 1.16667 NA intron (NM_020439, intron 3 of 12) MIRb|SINE|MIR 18245 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 220.167-6 chr11 102276782 102276970 + 1.16667 NA Intergenic L2|LINE|L2 -40608 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 209.834-10 chr7 65228603 65228984 + 1.16667 NA intron (NR_146906, intron 15 of 17) (TA)n|Simple_repeat|Simple_repeat 87763 NR_146905 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 181.834-8 chr3 24774812 24775017 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -54409 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 259.333-4 chr1 169539264 169539678 + 1.16667 NA intron (NM_000130, intron 13 of 24) intron (NM_000130, intron 13 of 24) 47060 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 203.333-66 chr9 36257131 36257489 + 1.16667 NA intron (NM_001128227, intron 1 of 11) intron (NM_001128227, intron 1 of 11) 1138 NM_001190383 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 240.334-3 chr11 17498293 17498706 + 1.16667 NA intron (NR_123738, intron 17 of 19) intron (NR_123738, intron 17 of 19) -21654 NM_000352 6833 Hs.54470 NM_000352 ENSG00000006071 ABCC8 ABC36|HHF1|HI|HRINS|MRP8|PHHI|SUR|SUR1|SUR1delta2|TNDM2 ATP binding cassette subfamily C member 8 protein-coding 179.5-31 chr3 96370611 96370839 + 1.16667 NA Intergenic Intergenic 10761 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 350.167-16 chrY 11293276 11293792 + 1.16667 NA Intergenic Intergenic 1128056 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 392.667-9 chrX 54891012 54891566 + 1.16667 NA Intergenic L1PREC2|LINE|L1 -29274 NM_001271183 7216 Hs.633653 NM_016157 ENSG00000067445 TRO MAGE-d3|MAGED3 trophinin protein-coding 213.834-6 chr13 102944492 102944736 + 1.16667 NA Intergenic Intergenic 64515 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 222.667-14 chr14 74272527 74272868 + 1.16667 NA Intergenic AluSz|SINE|Alu 30237 NR_148472 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 183.167-44 chr9 99347124 99347305 + 1.16667 NA Intergenic Intergenic 28043 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 325.834-5 chr8 78253574 78254024 + 1.16667 NA Intergenic Intergenic -262541 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 259.667-16 chr5 52837251 52837509 + 1.16667 NA intron (NM_181501, intron 1 of 28) LTR79|LTR|ERVL 49464 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 554.5 chr14 26731008 26731714 + 1.16667 NA intron (NR_147061, intron 3 of 6) LTR104_Mam|LTR|Gypsy -77987 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 262.667 chr1 11644378 11644775 + 1.16667 NA Intergenic Intergenic -9831 NM_001304791 93611 Hs.556006 NM_033182 ENSG00000132879 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 271.167-8 chr17 74512667 74513022 + 1.16667 NA Intergenic Intergenic 18631 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 292.167-12 chr3 36948358 36948721 + 1.16667 NA Intergenic HAL1|LINE|L1 -3485 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 248.5-15 chr16 1386772 1387137 + 1.16667 NA intron (NR_160278, intron 9 of 15) intron (NR_160278, intron 9 of 15) -7302 NR_160280 64718 Hs.643536 NM_001037125 ENSG00000059145 UNKL C16orf28|ZC3H5L|ZC3HDC5L unk like zinc finger protein-coding 265.334-3 chr13 55245535 55245896 + 1.16667 NA Intergenic L1MA4|LINE|L1 71261 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 259.5-12 chr2 19454393 19454752 + 1.16667 NA Intergenic L1MEg|LINE|L1 -95949 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 164-48 chr6 5470923 5471172 + 1.16667 NA intron (NM_006567, intron 4 of 6) intron (NM_006567, intron 4 of 6) -12972 NR_125846 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 323.167 chr12 4228971 4229345 + 1.16667 NA Intergenic AluJr|SINE|Alu -44604 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 298.834-3 chr20 10093150 10093471 + 1.16667 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 58323 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 207-29 chr7 41733569 41733793 + 1.16667 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -30591 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 260.833-5 chr16 62225498 62225970 + 1.16667 NA Intergenic Intergenic -189296 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 241.667-33 chr9 104282345 104282579 + 1.16667 NA intron (NR_135141, intron 2 of 3) intron (NR_135141, intron 2 of 3) 12233 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 262.834-7 chr7 25207465 25207850 + 1.16667 NA Intergenic Charlie7a|DNA|hAT-Charlie 20829 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 166.5-21 chr2 63387202 63387489 + 1.16667 NA intron (NR_148704, intron 11 of 18) L1PREC2|LINE|L1 50662 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 279.833-17 chr6 146837187 146837663 + 1.16667 NA Intergenic L1MD2|LINE|L1 -33601 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 221.334-10 chr4 14838031 14838469 + 1.16667 NA intron (NR_126435, intron 2 of 6) intron (NR_126435, intron 2 of 6) 49919 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 310.167-4 chr14 72904304 72904711 + 1.16667 NA Intergenic MIRb|SINE|MIR -10391 NM_001280542 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 301.334 chr1 197553439 197553932 + 1.16667 NA intron (NM_144977, intron 15 of 15) intron (NM_144977, intron 15 of 15) 221795 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 269.334-11 chr8 118312708 118313053 + 1.16667 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -201061 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 180.5-46 chr9 20630243 20630458 + 1.16667 NA Intergenic Intergenic -7851 NM_004529 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3 super elongation complex subunit protein-coding 186.667-67 chr9 3440966 3441215 + 1.16667 NA intron (NM_001282116, intron 1 of 16) L1ME1|LINE|L1 -45494 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 193.667-16 chr12 78129936 78130239 + 1.16667 NA intron (NM_001024383, intron 18 of 39) intron (NM_001024383, intron 18 of 39) 229659 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 270.834-9 chr6 159720231 159720767 + 1.16667 NA intron (NM_001322817, intron 3 of 7) intron (NM_001322817, intron 3 of 7) 6451 NM_001322820 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 208.334-10 chr7 39883666 39884015 + 1.16667 NA Intergenic L1MB3|LINE|L1 65579 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 172.5-41 chr5 7745014 7745408 + 1.16667 NA intron (NM_020546, intron 15 of 24) intron (NM_020546, intron 15 of 24) 105922 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 231.5-7 chr12 17621142 17621508 + 1.16667 NA Intergenic HAL1|LINE|L1 -32247 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 262.667-9 chr11 57026003 57026228 + 1.16667 NA Intergenic Intergenic -11419 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 275.667-9 chr16 51818461 51818838 + 1.16667 NA Intergenic Intergenic 56130 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 554.667 chr12 114013758 114014551 + 1.16667 NA Intergenic Intergenic -47829 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 209.667-14 chr17 31313794 31314046 + 1.16667 NA intron (NM_006495, intron 1 of 1) intron (NM_006495, intron 1 of 1) 134 NM_006495 2124 Hs.5509 NM_006495 ENSG00000185862 EVI2B CD361|D17S376|EVDB ecotropic viral integration site 2B protein-coding 237.834-8 chr4 87121627 87121874 + 1.16667 NA intron (NM_005935, intron 11 of 19) intron (NM_005935, intron 11 of 19) 98518 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 273.5-2 chr1 109281646 109282084 + 1.16667 NA exon (NM_001350242, exon 4 of 8) exon (NM_001350242, exon 4 of 8) 1279 NM_001350237 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 254.501-2 chr15 60520267 60520541 + 1.16667 NA intron (NR_120339, intron 4 of 5) intron (NR_120339, intron 4 of 5) 41226 NR_120342 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 253.167-17 chr5 4195350 4195711 + 1.16667 NA Intergenic AluYc|SINE|Alu -577951 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 184.167-30 chr5 81626482 81626698 + 1.16667 NA intron (NM_012446, intron 3 of 16) intron (NM_012446, intron 3 of 16) 124663 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 408.5-3 chr18 54679150 54679987 + 1.16667 NA Intergenic Intergenic 88409 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 212.001 chr3 182618340 182618550 + 1.16667 NA Intergenic Intergenic -111321 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 394.001 chr1 1231573 1232044 + 1.16667 NA promoter-TSS (NM_080605) promoter-TSS (NM_080605) 193 NM_016176 51150 Hs.42806 NM_016176 ENSG00000078808 SDF4 Cab45|SDF-4 stromal cell derived factor 4 protein-coding 201-14 chr16 89289406 89289663 + 1.16667 NA intron (NR_045839, intron 8 of 9) intron (NR_045839, intron 8 of 9) -6594 NR_136339 105371414 Hs.657381 NR_136339 ENSG00000260279 LOC105371414 - uncharacterized LOC105371414 ncRNA 510.834-2 chr11 3905202 3905931 + 1.16667 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 49504 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 197-20 chr22 45112018 45112320 + 1.16667 NA Intergenic Intergenic 40415 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 232.167-5 chr12 62409331 62409574 + 1.16667 NA non-coding (NR_147078, exon 22 of 22) non-coding (NR_147078, exon 22 of 22) -57374 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 397.667-3 chr10 84147652 84148152 + 1.16667 NA intron (NM_014394, intron 5 of 8) (TCTCATT)n|Simple_repeat|Simple_repeat 8393 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 174.5-39 chr8 135496849 135497045 + 1.16667 NA intron (NM_006558, intron 1 of 8) MLT1G1|LTR|ERVL-MaLR 39491 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 191.334-10 chr7 20114312 20114526 + 1.16667 NA intron (NR_110114, intron 1 of 5) MIRb|SINE|MIR 26007 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 311.501 chr4 66050352 66050674 + 1.16667 NA Intergenic Intergenic -226311 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 292.501-5 chr8 90082136 90082456 + 1.16667 NA intron (NM_001366795, intron 1 of 9) intron (NM_001366795, intron 1 of 9) 583 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 283.167-14 chr5 78008352 78008904 + 1.16667 NA intron (NM_003664, intron 26 of 26) intron (NM_003664, intron 26 of 26) 50381 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 174.333-41 chr8 108860533 108860994 + 1.16667 NA Intergenic Intergenic -73169 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 185.167-27 chr7 75046616 75046816 + 1.16667 NA intron (NM_030798, intron 10 of 10) intron (NM_030798, intron 10 of 10) 27086 NM_001363447 81554 Hs.529623 NM_030798 ENSG00000274523 RCC1L WBSCR16 RCC1 like protein-coding 244.833-5 chr2 120279360 120279753 + 1.16667 NA intron (NM_001369400, intron 2 of 4) MER2|DNA|TcMar-Tigger 26704 NM_001369400 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 190.333-29 chr3 181567276 181567566 + 1.16667 NA intron (NR_075091, intron 4 of 7) intron (NR_075091, intron 4 of 7) -42913 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 368.834-4 chr17 5031059 5032060 + 1.16667 NA Intergenic Intergenic 3867 NM_017986 55065 Hs.632247 NM_017986 ENSG00000132517 SLC52A1 GPCR42|GPR172B|PAR2|RBFVD|RFT1|RFVT1|hRFT1 solute carrier family 52 member 1 protein-coding 258.5-3 chr10 54214776 54215044 + 1.16667 NA intron (NM_001354411, intron 9 of 34) intron (NM_001354411, intron 9 of 34) -271320 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 229.334-9 chr5 11688459 11688719 + 1.16667 NA intron (NM_001288717, intron 2 of 20) MIRb|SINE|MIR -99523 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 282.834-2 chr14 64664066 64664436 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -40173 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 164.167-33 chr3 64483570 64483831 + 1.16667 NA Intergenic MER3|DNA|hAT-Charlie -77646 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 235.334-9 chr5 120394186 120394601 + 1.16667 NA Intergenic L1MB1|LINE|L1 -69885 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 275.833-7 chr11 67071684 67072244 + 1.16667 NA TTS (NM_014578) TTS (NM_014578) 15117 NM_001300886 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 295.833-10 chr8 71628750 71629236 + 1.16667 NA Intergenic Intergenic -80899 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 215.834-4 chr14 70744580 70744818 + 1.16667 NA intron (NM_033141, intron 5 of 12) intron (NM_033141, intron 5 of 12) 38753 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 169.167-33 chr9 27893042 27893295 + 1.16667 NA Intergenic Intergenic -319302 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 263.334-4 chr15 70596179 70596496 + 1.16667 NA Intergenic Intergenic -9731 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 254.501 chr10 100290921 100291195 + 1.16667 NA intron (NM_016112, intron 12 of 15) MER5B|DNA|hAT-Charlie -4346 NM_001282439 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 206.5-39 chr20 55572715 55573023 + 1.16667 NA Intergenic Intergenic -145672 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 171.834-3 chr2 83421857 83422281 + 1.16667 NA Intergenic L1PB4|LINE|L1 -100745 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 219.667-7 chr15 58742701 58743026 + 1.16667 NA intron (NM_001320570, intron 1 of 14) AluJb|SINE|Alu 6844 NM_001320570 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 330.667-6 chr19 45196725 45197269 + 1.16667 NA Intergenic Intergenic 18252 NM_212550 388552 Hs.103902 NM_212550 ENSG00000189114 BLOC1S3 BLOS3|HPS8|RP biogenesis of lysosomal organelles complex 1 subunit 3 protein-coding 233.334-8 chr6 131782939 131783145 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -9130 NR_039610 100616455 NR_039610 ENSG00000266807 MIR548H5 - microRNA 548h-5 ncRNA 220.5-5 chr10 112827048 112827318 + 1.16667 NA non-coding (NR_120684, exon 1 of 1) non-coding (NR_120684, exon 1 of 1) 3687 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 193-21 chr2 60755897 60756179 + 1.16667 NA promoter-TSS (NM_022894) promoter-TSS (NM_022894) -230 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 254.333-19 chr18 62186841 62187356 + 1.16667 NA promoter-TSS (NM_001346231) promoter-TSS (NM_001346231) -42 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 371.667-2 chr1 147308566 147308911 + 1.16667 NA Intergenic L1PA4|LINE|L1 65596 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 279.667-21 chr5 53502881 53503226 + 1.16667 NA Intergenic Intergenic 22424 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 286.001-5 chr8 134155689 134156016 + 1.16667 NA Intergenic L1MEh|LINE|L1 269356 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 352.167-3 chr16 84851547 84852111 + 1.16667 NA intron (NM_031476, intron 5 of 14) intron (NM_031476, intron 5 of 14) 31844 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 201.834-6 chr2 58057557 58057733 + 1.16667 NA intron (NM_001130483, intron 2 of 13) intron (NM_001130483, intron 2 of 13) 10933 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 206-32 chr6 47633656 47633845 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -22722 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 402-12 chr8 56074508 56075121 + 1.16667 NA promoter-TSS (NR_002437) promoter-TSS (NR_002437) 222 NR_149110 105375847 NR_149110 ENSG00000253603 CERNA3 CTA competing endogenous lncRNA 3 for miR-645 ncRNA 240-44 chr4 135781147 135781532 + 1.16667 NA Intergenic L1M4b|LINE|L1 106754 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 263.667-27 chrX 84499777 84500142 + 1.16667 NA intron (NM_001177478, intron 1 of 9) intron (NM_001177478, intron 1 of 9) 2494 NM_144657 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 249.334-6 chr4 122504632 122504880 + 1.16667 NA Intergenic Intergenic -48261 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 229.834-4 chr5 36505932 36506194 + 1.16667 NA Intergenic L1MEd|LINE|L1 -100292 NM_001289939 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 192.333-4 chr1 209192351 209192593 + 1.16667 NA Intergenic Intergenic -132984 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 321.5-2 chr1 74774794 74775182 + 1.16667 NA Intergenic Intergenic -41580 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 230-5 chr10 29416577 29416869 + 1.16667 NA intron (NR_110927, intron 2 of 2) L1MC4|LINE|L1 6480 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 377.834-3 chr17 47084894 47085464 + 1.16667 NA Intergenic Intergenic 104116 NM_001256 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 183.167-31 chr5 148339110 148339361 + 1.16667 NA intron (NM_001040433, intron 3 of 3) intron (NM_001040433, intron 3 of 3) 3676 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 307.5-6 chr10 27553730 27554168 + 1.16667 NA Intergenic L1MD2|LINE|L1 49645 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 299.167-6 chr10 70865069 70865470 + 1.16667 NA intron (NM_003901, intron 7 of 14) HAL1b|LINE|L1 22612 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 253-20 chr3 110970145 110970577 + 1.16667 NA Intergenic L2a|LINE|L2 99598 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 300-19 chr6 4126091 4126629 + 1.16667 NA intron (NM_206836, intron 5 of 9) L2b|LINE|L2 9108 NM_001166010 10455 Hs.15250 NM_006117 ENSG00000198721 ECI2 ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3 enoyl-CoA delta isomerase 2 protein-coding 257.5-11 chr14 75285415 75286055 + 1.16667 NA Intergenic Intergenic 6907 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 169.5-31 chr4 15755514 15755730 + 1.16667 NA Intergenic Intergenic -22706 NR_132660 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 369.5-13 chr22 30334204 30334718 + 1.16667 NA 3' UTR (NM_005877, exon 16 of 16) 3' UTR (NM_005877, exon 16 of 16) -7520 NM_031937 83874 Hs.655273 NM_031937 ENSG00000099992 TBC1D10A EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 TBC1 domain family member 10A protein-coding 299.334-7 chr8 126745422 126745815 + 1.16667 NA Intergenic Intergenic -187140 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 196.5-46 chr8 85660181 85660387 + 1.16667 NA Intergenic L1P1|LINE|L1 2229 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 250-20 chr22 37249204 37249592 + 1.16667 NA Intergenic L1M5|LINE|L1 -5129 NM_002872 5880 Hs.517601 NM_002872 ENSG00000128340 RAC2 EN-7|Gx|HSPC022|p21-Rac2 Rac family small GTPase 2 protein-coding 229.667-50 chrX 138777019 138777403 + 1.16667 NA intron (NM_001139498, intron 2 of 5) L1MDb|LINE|L1 -37858 NM_033642 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 291.334-5 chr19 50705373 50705732 + 1.16667 NA intron (NM_016148, intron 8 of 23) MER20|DNA|hAT-Charlie 14250 NM_016148 50944 Hs.274255 NM_016148 ENSG00000161681 SHANK1 SPANK-1|SSTRIP|synamon SH3 and multiple ankyrin repeat domains 1 protein-coding 244.334-8 chr3 30450669 30450942 + 1.16667 NA Intergenic L2|LINE|L2 -68063 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 169.333-67 chrX 40535539 40535853 + 1.16667 NA Intergenic L1MB2|LINE|L1 -45274 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 388.667-3 chr21 27511908 27512450 + 1.16667 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -210200 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 221-21 chr20 59063638 59063945 + 1.16667 NA Intergenic Intergenic -20945 NR_037930 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 202.834 chr1 27914659 27914894 + 1.16667 NA promoter-TSS (NM_001355129) promoter-TSS (NM_001355129) 21 NM_001355129 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 164.667-45 chr5 150368300 150368524 + 1.16667 NA intron (NM_001008657, intron 4 of 17) intron (NM_001008657, intron 4 of 17) 10715 NM_000356 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 364.334-2 chr4 39387986 39388429 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -18723 NM_175737 152831 Hs.90756 NM_175737 ENSG00000134962 KLB BKL klotho beta protein-coding 229.5-7 chr12 116054676 116055086 + 1.16667 NA intron (NM_015335, intron 4 of 30) L1ME3A|LINE|L1 93773 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 274.334-7 chr6 26576982 26577638 + 1.16667 NA Intergenic Intergenic 7986 NR_134611 105374988 Hs.551772 NR_134611 ENSG00000284607 LOC105374988 - uncharacterized LOC105374988 ncRNA 240.501-2 chr17 58291353 58291646 + 1.16667 NA Intergenic L1M5|LINE|L1 -10564 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 247-22 chr2 133772047 133772280 + 1.16667 NA Intergenic Intergenic -203700 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 257.334 chr12 113334745 113335192 + 1.16667 NA non-coding (NR_152403, exon 1 of 16) non-coding (NR_152403, exon 1 of 16) 141 NM_001330466 80024 Hs.286194 NM_024959 ENSG00000089060 SLC8B1 NCKX6|NCLX|SLC24A6 solute carrier family 8 member B1 protein-coding 343.668 chr7 159146098 159146606 + 1.16667 NA Intergenic Intergenic -1395 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 172-17 chr15 69537404 69537619 + 1.16667 NA Intergenic Intergenic -24209 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 173.667-19 chr15 25985092 25985317 + 1.16667 NA intron (NR_040082, intron 1 of 4) intron (NR_040082, intron 1 of 4) 82844 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 222.5-19 chr18 13500855 13501406 + 1.16667 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) 41183 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 304.667-13 chr3 23673025 23673556 + 1.16667 NA Intergenic L1MC3|LINE|L1 -132665 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 256.667-31 chr9 87206065 87206408 + 1.16667 NA Intergenic Intergenic 57592 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 318.667-6 chr2 125460417 125460779 + 1.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 657387 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 300.167-15 chr8 133033310 133033758 + 1.16667 NA intron (NM_003235, intron 41 of 47) intron (NM_003235, intron 41 of 47) 13047 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 163.5-3 chr1 82306843 82307017 + 1.16667 NA Intergenic Intergenic 504477 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 220.333-29 chr7 122014782 122015080 + 1.16667 NA intron (NM_002851, intron 12 of 29) intron (NM_002851, intron 12 of 29) 129318 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 174.167-16 chr18 8068525 8068806 + 1.16667 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 298369 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 172.833-25 chr5 181023455 181023729 + 1.16667 NA Intergenic Intergenic -16674 NM_152547 153579 Hs.546502 NM_152547 ENSG00000165810 BTNL9 BTN3|BTN8|VDLS1900 butyrophilin like 9 protein-coding 179.501 chr13 48948181 48948387 + 1.16667 NA Intergenic AluSc8|SINE|Alu -27628 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 203.167-3 chr10 59803731 59803968 + 1.16667 NA intron (NM_005436, intron 7 of 8) intron (NM_005436, intron 7 of 8) -50394 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 171.167-28 chr4 112963764 112963936 + 1.16667 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -85564 NM_001354241 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 176.167-14 chr14 51701104 51701432 + 1.16667 NA intron (NM_001267046, intron 4 of 13) intron (NM_001267046, intron 4 of 13) -16015 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 268.001-2 chr17 68661134 68661559 + 1.16667 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 33192 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 267.5-4 chr10 65687866 65688249 + 1.16667 NA intron (NR_120647, intron 3 of 5) MIRb|SINE|MIR 116632 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 222.334-5 chr3 121166108 121166455 + 1.16667 NA intron (NM_001348343, intron 9 of 27) AluJb|SINE|Alu 116641 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 440.834-4 chr2 176362789 176363362 + 1.16667 NA Intergenic L1ME1|LINE|L1 93633 NM_001006635 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 330.667-16 chr8 81237817 81238175 + 1.16667 NA Intergenic L2c|LINE|L2 -42540 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 191-14 chr12 66025556 66025779 + 1.16667 NA Intergenic Intergenic -1941 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 203.667-55 chr8 100717814 100718084 + 1.16667 NA intron (NM_002568, intron 2 of 14) intron (NM_002568, intron 2 of 14) 4139 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 228.5-18 chr22 27515761 27516015 + 1.16667 NA Intergenic MIRb|SINE|MIR 205237 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 306.167-2 chr11 62946382 62946826 + 1.16667 NA Intergenic MIRc|SINE|MIR -25241 NM_000738 1128 Hs.632119 NM_000738 ENSG00000168539 CHRM1 HM1|M1|M1R cholinergic receptor muscarinic 1 protein-coding 465.167 chr1 77126139 77126832 + 1.16667 NA intron (NM_005482, intron 9 of 10) intron (NM_005482, intron 9 of 10) 66342 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 390.834-2 chr10 62038453 62038874 + 1.16667 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -10694 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 349.167-10 chr8 135038878 135039464 + 1.16667 NA Intergenic Intergenic 189236 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 193.167-36 chrX 46429588 46429864 + 1.16667 NA Intergenic L1MEg|LINE|L1 -17463 NM_017776 55634 Hs.632800 NM_017776 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 551.666-4 chr4 21470058 21470966 + 1.16667 NA intron (NM_147182, intron 2 of 8) MIRb|SINE|MIR -5754 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 244.834-4 chr6 147766476 147766863 + 1.16667 NA Intergenic HAL1|LINE|L1 257979 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 299.833-5 chr11 66516147 66516692 + 1.16667 NA intron (NM_024649, intron 7 of 16) AluSx|SINE|Alu 5784 NM_024649 582 Hs.502915 NM_024649 ENSG00000174483 BBS1 BBS2L2 Bardet-Biedl syndrome 1 protein-coding 310.333-4 chr12 100348649 100349112 + 1.16667 NA Intergenic Intergenic -8194 NM_001145288 246213 Hs.116871 NM_139319 ENSG00000179520 SLC17A8 DFNA25|VGLUT3 solute carrier family 17 member 8 protein-coding 289-25 chr9 31081329 31081811 + 1.16667 NA Intergenic L2|LINE|L2 299920 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 262.5-15 chr19 29973458 29973904 + 1.16667 NA intron (NM_001252641, intron 2 of 10) intron (NM_001252641, intron 2 of 10) 31442 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 236.667-4 chr1 206000808 206001117 + 1.16667 NA intron (NM_001164522, intron 1 of 5) intron (NM_001164522, intron 1 of 5) 2433 NM_001164522 338382 Hs.534612 NM_177403 ENSG00000276600 RAB7B RAB7 RAB7B, member RAS oncogene family protein-coding 345.667 chr11 101061797 101062148 + 1.16667 NA intron (NM_001271161, intron 3 of 6) intron (NM_001271161, intron 3 of 6) 67091 NR_073142 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 163.5-7 chr11 70233584 70233861 + 1.16667 NA Intergenic Intergenic 30559 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 306.834-9 chr4 87109773 87110079 + 1.16667 NA intron (NM_005935, intron 10 of 19) intron (NM_005935, intron 10 of 19) 102925 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 412.501 chr17 31677603 31678451 + 1.16667 NA Intergenic Intergenic 102616 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 307.167-15 chr2 5070227 5070934 + 1.16667 NA Intergenic L1MD1|LINE|L1 -414358 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 244.334-11 chr7 37954979 37955661 + 1.16667 NA Intergenic Intergenic 34001 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 333.001-3 chr20 55290777 55291163 + 1.16667 NA Intergenic Intergenic -132073 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 358.334-4 chr3 43190334 43190869 + 1.16667 NA Intergenic L2a|LINE|L2 -84522 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 388-16 chr9 29068814 29069360 + 1.16667 NA intron (NM_001354574, intron 1 of 5) L3|LINE|CR1 143212 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 256.833 chr1 16055868 16056303 + 1.16667 NA intron (NM_000085, intron 18 of 19) MIRc|SINE|MIR 7323 NM_001165945 1188 Hs.352243 NM_000085 ENSG00000184908 CLCNKB CLCKB|ClC-K2|ClC-Kb chloride voltage-gated channel Kb protein-coding 327.5-10 chr17 19979946 19980325 + 1.16667 NA Intergenic CpG -2279 NM_001330152 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 213.667-15 chr16 66780540 66780873 + 1.16667 NA intron (NM_001136505, intron 9 of 18) intron (NM_001136505, intron 9 of 18) 20914 NM_001136505 283847 Hs.376505 NM_173616 ENSG00000249961 TERB1 CCDC79 telomere repeat binding bouquet formation protein 1 protein-coding 196.167-11 chr14 65811417 65811717 + 1.16667 NA Intergenic Intergenic 340465 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 528.5 chr1 20376654 20377282 + 1.16667 NA intron (NR_033887, intron 9 of 11) intron (NR_033887, intron 9 of 11) 51826 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 194.5-18 chr14 58825793 58826043 + 1.16667 NA Intergenic MIRb|SINE|MIR -2370 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 372.834-5 chr3 172836154 172836565 + 1.16667 NA Intergenic L1ME3G|LINE|L1 85357 NM_001349096 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 263.501-3 chr7 99504567 99504848 + 1.16667 NA promoter-TSS (NM_014569) promoter-TSS (NM_014569) 45 NM_001318082 23660 Hs.110839 NM_014569 ENSG00000196652 ZKSCAN5 ZFP-95|ZFP95|ZNF914|ZSCAN37 zinc finger with KRAB and SCAN domains 5 protein-coding 174.334-2 chr10 44364478 44364639 + 1.16667 NA Intergenic L2a|LINE|L2 20539 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 338.5-2 chr16 63786266 63786943 + 1.16667 NA Intergenic MER66-int|LTR|ERV1 1335459 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 323.167-7 chr6 47491833 47492178 + 1.16667 NA intron (NM_012120, intron 1 of 17) intron (NM_012120, intron 1 of 17) 14216 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 271.5-10 chr14 22982364 22982824 + 1.16667 NA promoter-TSS (NM_032876) promoter-TSS (NM_032876) -43 NM_001289097 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding 185.834-2 chr12 24026002 24026221 + 1.16667 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -75079 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 235.5-22 chr7 109989379 109989807 + 1.16667 NA Intergenic L1MEd|LINE|L1 -29380 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 232.834-11 chr6 40906390 40906815 + 1.16667 NA intron (NR_110873, intron 1 of 5) MER33|DNA|hAT-Charlie 116678 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 336.001-2 chr20 51220321 51220837 + 1.16667 NA Intergenic Intergenic -197472 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 202.001-2 chr4 52026652 52026831 + 1.16667 NA intron (NM_000232, intron 5 of 5) intron (NM_000232, intron 5 of 5) -6378 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 200.167-14 chr18 13593459 13593898 + 1.16667 NA intron (NM_181482, intron 4 of 5) FLAM_C|SINE|Alu -17436 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 303.167-5 chr6 36123164 36123580 + 1.16667 NA Intergenic Intergenic -7141 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 320.667-10 chr17 62672240 62672692 + 1.16667 NA intron (NM_006039, intron 8 of 29) intron (NM_006039, intron 8 of 29) -33740 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 239.333-28 chr6 51241985 51242426 + 1.16667 NA Intergenic Intergenic -379665 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 239-15 chr17 75430513 75430815 + 1.16667 NA Intergenic Intergenic 24595 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 271-25 chr6 61806082 61806420 + 1.16667 NA intron (NR_146874, intron 6 of 13) MLT1G1|LTR|ERVL-MaLR 232121 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 232.334-2 chr10 49159840 49160053 + 1.16667 NA intron (NM_001288742, intron 4 of 4) L1MC4|LINE|L1 -25926 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 210.834 chr10 74153032 74153228 + 1.16667 NA intron (NM_001369123, intron 1 of 9) intron (NM_001369123, intron 1 of 9) 1909 NM_001369123 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 176.834-5 chr5 109978209 109978465 + 1.16667 NA Intergenic L1ME3A|LINE|L1 95155 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 459.167-8 chr9 130451434 130452502 + 1.16667 NA intron (NM_000050, intron 2 of 15) intron (NM_000050, intron 2 of 15) 7007 NM_054012 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 274.5-3 chr11 76826192 76826478 + 1.16667 NA Intergenic MER4D0|LTR|ERV1 34583 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 182.5-29 chr5 18781363 18781603 + 1.16667 NA Intergenic Intergenic 974209 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 306.334-13 chr8 137709843 137710132 + 1.16667 NA Intergenic L1ME1|LINE|L1 -296399 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 216.667-46 chr8 11409229 11409560 + 1.16667 NA intron (NR_026814, intron 3 of 6) intron (NR_026814, intron 3 of 6) 40992 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 282.334-5 chr8 123231760 123232124 + 1.16667 NA intron (NM_001204180, intron 4 of 5) intron (NM_001204180, intron 4 of 5) 9435 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 210-2 chr1 166982626 166982975 + 1.16667 NA intron (NM_001286378, intron 1 of 12) L2a|LINE|L2 -6289 NM_001286377 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 219.5-17 chr2 105417629 105417903 + 1.16667 NA intron (NM_201557, intron 1 of 5) Charlie1a|DNA|hAT-Charlie -18099 NM_001318894 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 223.667-16 chr13 108181391 108181631 + 1.16667 NA Intergenic L1MC3|LINE|L1 33271 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 202.167-17 chr16 74724772 74725077 + 1.16667 NA intron (NM_024306, intron 4 of 6) intron (NM_024306, intron 4 of 6) -24062 NM_001142497 197259 Hs.119878 NM_152649 ENSG00000168404 MLKL hMLKL mixed lineage kinase domain like pseudokinase protein-coding 179.167-22 chr6 165218805 165219171 + 1.16667 NA Intergenic Intergenic 90617 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 280.667-10 chr3 11392254 11392624 + 1.16667 NA intron (NM_001144912, intron 16 of 16) intron (NM_001144912, intron 16 of 16) 120042 NM_001144912 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 298.834-5 chr21 44487814 44488545 + 1.16667 NA intron (NR_155204, intron 1 of 1) HUERS-P2-int|LTR|ERV1 2608 NR_155204 111216286 Hs.572852 NR_155204 LINC02575 - long intergenic non-protein coding RNA 2575 ncRNA 164.167-23 chr2 95194893 95195100 + 1.16667 NA Intergenic L1MA1|LINE|L1 29187 NM_001282398 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 384.167-2 chr12 65026673 65027332 + 1.16667 NA Intergenic L1MA8|LINE|L1 -34711 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 295.667-2 chr10 22960704 22961121 + 1.16667 NA intron (NM_001282745, intron 6 of 18) MLT1C|LTR|ERVL-MaLR 32859 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 220.333-4 chr10 94536184 94536625 + 1.16667 NA TTS (NM_015188) TTS (NM_015188) -9363 NM_001289067 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 220.834-4 chr20 46736170 46736462 + 1.16667 NA TTS (NM_030777) TTS (NM_030777) 26667 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 179.667-20 chr2 84098242 84098449 + 1.16667 NA Intergenic L1MA8|LINE|L1 -192337 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 203.834 chr10 81260079 81260355 + 1.16667 NA Intergenic Intergenic 610420 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 193.667-34 chr3 88713334 88713594 + 1.16667 NA Intergenic L1MA1|LINE|L1 375008 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 321-25 chr8 121309144 121309662 + 1.16667 NA Intergenic L1MA8|LINE|L1 -329943 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 222.834-8 chr4 66984287 66984623 + 1.16667 NA Intergenic L1P3|LINE|L1 437545 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 170.5-12 chr14 73106006 73106389 + 1.16667 NA exon (NM_021239, exon 12 of 19) exon (NM_021239, exon 12 of 19) -30310 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 324.167-22 chrX 98433217 98433757 + 1.16667 NA Intergenic Intergenic -868952 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 178.5-10 chr11 109155804 109156009 + 1.16667 NA Intergenic L1MEf|LINE|L1 -266284 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 320.167-8 chr2 171062775 171063127 + 1.16667 NA intron (NM_012290, intron 3 of 20) intron (NM_012290, intron 3 of 20) 4022 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 164.667-21 chr17 28140217 28140462 + 1.16667 NA intron (NM_016231, intron 3 of 10) L1MB4|LINE|L1 -86224 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 206.167 chr1 73518516 73518747 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -156048 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 294.833-6 chr17 48404817 48405222 + 1.16667 NA intron (NM_001075099, intron 1 of 12) L1M6|LINE|L1 25195 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 365.001 chr1 112125996 112126380 + 1.16667 NA Intergenic MLT2A1|LTR|ERVL 135652 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 204.5-8 chr12 39448838 39449387 + 1.16667 NA Intergenic MER45B|DNA|hAT-Tip100 -5992 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 309.834 chr12 11565957 11566283 + 1.16667 NA Intergenic L1M4|LINE|L1 18090 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 225.667-29 chr4 32598697 32599053 + 1.16667 NA Intergenic Intergenic 247837 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 557.5-4 chr5 109184530 109185540 + 1.16667 NA intron (NR_146155, intron 18 of 19) intron (NR_146155, intron 18 of 19) 141334 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 369.5-7 chr15 77144354 77145044 + 1.16667 NA intron (NM_024776, intron 6 of 7) intron (NM_024776, intron 6 of 7) -73590 NM_005724 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 200.833-16 chr15 83052263 83052571 + 1.16667 NA intron (NM_001011885, intron 2 of 6) L1MC4|LINE|L1 14835 NM_001011885 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 336.334-8 chr4 99947799 99948244 + 1.16667 NA TTS (NM_002106) TTS (NM_002106) -1403 NM_001278310 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 257.333-3 chr1 158651692 158652184 + 1.16667 NA intron (NM_003126, intron 23 of 51) (GT)n|Simple_repeat|Simple_repeat 34777 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 361.834-2 chr10 26485426 26485984 + 1.16667 NA intron (NM_019043, intron 2 of 14) MIRb|SINE|MIR 47364 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 240.834-7 chr3 167034167 167034551 + 1.16667 NA Intergenic Intergenic 135676 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 169.833-21 chr2 130297447 130297697 + 1.16667 NA Intergenic Intergenic 44536 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 302.5-4 chr10 16094936 16095220 + 1.16667 NA Intergenic L1MEc|LINE|L1 -234545 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 197.333-31 chr5 100513243 100513483 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -22011 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 273.001-3 chr14 36327013 36327313 + 1.16667 NA Intergenic L1PA13|LINE|L1 -6487 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 420.167-5 chr12 63839245 63839802 + 1.16667 NA Intergenic Intergenic -5177 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 170.334-3 chr16 35443447 35443640 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 37053 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 224.833-18 chr4 86840409 86840804 + 1.16667 NA intron (NM_197965, intron 1 of 5) L1M5|LINE|L1 8778 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 265.667-19 chr6 63605738 63606064 + 1.16667 NA Intergenic L1ME3C|LINE|L1 -29901 NM_001370349 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 447.167-2 chr9 30996769 30997531 + 1.16667 NA Intergenic Intergenic 384340 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 332.834-3 chr2 215698188 215698579 + 1.16667 NA intron (NR_037195, intron 5 of 9) L1MEd|LINE|L1 -19660 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 256.334-8 chr4 41709687 41710139 + 1.16667 NA Intergenic Intergenic 39057 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 252.667-12 chr17 72039842 72040115 + 1.16667 NA non-coding (NR_110124, exon 3 of 3) non-coding (NR_110124, exon 3 of 3) 9324 NR_110132 102606463 Hs.512309 NR_110124 ENSG00000256124 LINC01152 CMPD|TCONS_00025128 long intergenic non-protein coding RNA 1152 ncRNA 309.5 chr1 31789329 31789803 + 1.16667 NA TTS (NM_001281988) TTS (NM_001281988) -25226 NM_001294335 576 Hs.524138 NM_001294335 ENSG00000121753 ADGRB2 BAI2 adhesion G protein-coupled receptor B2 protein-coding 195.5-26 chr4 66179094 66179378 + 1.16667 NA Intergenic Intergenic -97588 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 190.667-39 chr3 146209600 146209778 + 1.16667 NA intron (NM_001128306, intron 3 of 6) intron (NM_001128306, intron 3 of 6) 40926 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 236.5-11 chr15 76235125 76235361 + 1.16667 NA intron (NM_000126, intron 9 of 11) intron (NM_000126, intron 9 of 11) 24909 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 209-9 chr12 12611701 12612046 + 1.16667 NA promoter-TSS (NM_001310) promoter-TSS (NM_001310) -3 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 202-21 chr2 200944918 200945108 + 1.16667 NA intron (NR_033915, intron 5 of 16) MER58A|DNA|hAT-Charlie 18647 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 242-20 chr20 56250107 56250532 + 1.16667 NA TTS (NM_019888) TTS (NM_019888) 1587 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 183-4 chr10 19117312 19117669 + 1.16667 NA intron (NM_001142308, intron 5 of 39) intron (NM_001142308, intron 5 of 39) 68689 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 165.667-43 chr5 125793396 125793643 + 1.16667 NA Intergenic ERVL47-int|LTR|ERVL 300258 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 222.5-29 chr4 114874666 114875012 + 1.16667 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 218080 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 188.667-21 chr2 15242314 15242573 + 1.16667 NA intron (NR_052013, intron 44 of 50) intron (NR_052013, intron 44 of 50) 318891 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 179-43 chr7 116180080 116180585 + 1.16667 NA Intergenic Intergenic -30207 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 195.5-3 chr12 53257552 53257750 + 1.16667 NA Intergenic MIRc|SINE|MIR 5556 NM_032889 84975 Hs.654660 NM_032889 ENSG00000182544 MFSD5 hsMOT2 major facilitator superfamily domain containing 5 protein-coding 165.167-2 chr1 102201980 102202342 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -204927 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 219.5-4 chr10 37222061 37222315 + 1.16667 NA intron (NM_052997, intron 34 of 35) L1MB8|LINE|L1 -86998 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 168.167-15 chr2 16718959 16719139 + 1.16667 NA Intergenic Intergenic -53215 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 303.167-2 chr21 29505060 29505372 + 1.16667 NA Intergenic Intergenic 9169 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 379.5-7 chr20 46695864 46696352 + 1.16667 NA Intergenic Intergenic -6664 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding 225-40 chr8 132978829 132979119 + 1.16667 NA intron (NM_003235, intron 34 of 47) intron (NM_003235, intron 34 of 47) 67607 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 232.5-4 chr10 45594753 45594976 + 1.16667 NA promoter-TSS (NM_145021) promoter-TSS (NM_145021) 42 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 336.667-13 chr8 111009487 111009970 + 1.16667 NA intron (NR_125416, intron 1 of 4) intron (NR_125416, intron 1 of 4) 17705 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 253.001 chr10 114961317 114961935 + 1.16667 NA intron (NM_139169, intron 4 of 7) intron (NM_139169, intron 4 of 7) 23431 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 228-32 chr4 55010246 55010567 + 1.16667 NA Intergenic L2a|LINE|L2 115189 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 269.667-26 chr7 119935188 119935578 + 1.16667 NA Intergenic Intergenic -28008 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 216.667-53 chr9 94259128 94259469 + 1.16667 NA promoter-TSS (NM_001301275) promoter-TSS (NM_001301275) 0 NM_001301275 169841 Hs.387623 NM_003448 ENSG00000175787 ZNF169 - zinc finger protein 169 protein-coding 173.167-16 chr2 48381683 48381967 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -58941 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 365.501 chr14 45490709 45491125 + 1.16667 NA Intergenic L1MA2|LINE|L1 224685 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 318.834-2 chr10 29293369 29293807 + 1.16667 NA intron (NM_032517, intron 3 of 4) intron (NM_032517, intron 3 of 4) 4518 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 195.834 chr1 20948498 20948842 + 1.16667 NA intron (NM_003760, intron 8 of 31) intron (NM_003760, intron 8 of 31) 39762 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 262.834-4 chr5 92728700 92729054 + 1.16667 NA Intergenic Intergenic 842466 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 288-4 chr1 218346805 218347361 + 1.16667 NA intron (NR_138148, intron 1 of 6) CpG -1405 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 314-6 chr15 60554258 60554801 + 1.16667 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 37997 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 216.334-4 chr2 19999439 19999763 + 1.16667 NA intron (NR_110235, intron 2 of 2) intron (NR_110235, intron 2 of 2) 9397 NR_110235 101928222 Hs.6985 NR_110235 LOC101928222 - uncharacterized LOC101928222 ncRNA 197.834-4 chr1 168815598 168815779 + 1.16667 NA Intergenic Intergenic 28747 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 239.501 chr1 31618019 31618274 + 1.16667 NA intron (NM_001525, intron 1 of 8) CpG 446 NM_001525 3061 Hs.388226 NM_001525 ENSG00000121764 HCRTR1 OX1R hypocretin receptor 1 protein-coding 197.667-50 chr9 137579078 137579415 + 1.16667 NA promoter-TSS (NM_001346376) promoter-TSS (NM_001346376) -321 NM_001346374 92715 Hs.292570 NM_138778 ENSG00000148399 DPH7 C9orf112|RRT2|WDR85 diphthamide biosynthesis 7 protein-coding 267.5-27 chr2 155293495 155293815 + 1.16667 NA Intergenic L1ME3E|LINE|L1 594960 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 435.001-4 chr3 197596729 197597211 + 1.16667 NA Intergenic Intergenic -23647 NM_203315 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 317.667-9 chr3 116929757 116930237 + 1.16667 NA intron (NR_121607, intron 1 of 1) intron (NR_121607, intron 1 of 1) 8566 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 368.334-4 chr19 664828 665426 + 1.16667 NA Intergenic Intergenic -1913 NM_001366018 55658 Hs.69554 NM_017876 ENSG00000070423 RNF126 - ring finger protein 126 protein-coding 167.5-25 chr22 28176754 28177314 + 1.16667 NA intron (NM_001145418, intron 5 of 22) L1MC2|LINE|L1 -256422 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 278.501 chr2 232385525 232385806 + 1.16667 NA TTS (NR_028501) TTS (NR_028501) 1379 NR_028501 347694 Hs.452575 NR_028501 ENSG00000244280 ECEL1P2 ECEL2 endothelin converting enzyme like 1 pseudogene 2 pseudo 244.667-32 chr7 19226233 19226471 + 1.16667 NA Intergenic Intergenic -80931 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 208.334-6 chr3 56096619 56096818 + 1.16667 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -244124 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 266.501 chr11 36350906 36351568 + 1.16667 NA intron (NM_001160167, intron 1 of 8) intron (NM_001160167, intron 1 of 8) -24748 NM_024841 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 201-17 chr17 63104414 63104717 + 1.16667 NA intron (NM_025185, intron 4 of 25) L1ME4b|LINE|L1 138330 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 293.167-7 chr2 62709297 62709703 + 1.16667 NA intron (NM_001142615, intron 2 of 22) intron (NM_001142615, intron 2 of 22) 2603 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 213.667-31 chr3 151168452 151168685 + 1.16667 NA intron (NM_053002, intron 10 of 42) intron (NM_053002, intron 10 of 42) 34648 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 326.834-7 chr3 70298963 70299295 + 1.16667 NA intron (NM_001364676, intron 2 of 4) L1ME4a|LINE|L1 13509 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 174-29 chr2 181498034 181498425 + 1.16667 NA intron (NM_000885, intron 14 of 27) L1MC5a|LINE|L1 40843 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 229.667-4 chr10 24464086 24464539 + 1.16667 NA intron (NM_001321681, intron 1 of 13) intron (NM_001321681, intron 1 of 13) -2219 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 182.5-16 chr14 96853179 96853440 + 1.16667 NA intron (NM_003384, intron 7 of 12) intron (NM_003384, intron 7 of 12) 55927 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 230.334-9 chr6 135933303 135933664 + 1.16667 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 81782 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 256.501-3 chr2 205651928 205652188 + 1.16667 NA Intergenic Intergenic -30442 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 342-9 chr2 207274604 207275160 + 1.16667 NA Intergenic Intergenic -5458 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 316.5-15 chr2 101047532 101047985 + 1.16667 NA intron (NM_001102426, intron 5 of 19) intron (NM_001102426, intron 5 of 19) 45469 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 224.667-11 chr12 5943316 5943730 + 1.16667 NA intron (NM_001278597, intron 1 of 25) L1PB2|LINE|L1 1736 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 378.167-2 chr1 182237244 182237721 + 1.16667 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 76579 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 241.5-13 chr3 115219469 115219787 + 1.16667 NA Intergenic Intergenic -72340 NM_001348801 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 244.333-13 chr17 70562390 70562655 + 1.16667 NA Intergenic Intergenic 392987 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 240.167-24 chr8 136142816 136143183 + 1.16667 NA Intergenic L2a|LINE|L2 -387799 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 378.001-3 chr6 57257838 57258343 + 1.16667 NA Intergenic Intergenic 5256 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 213.167-27 chr7 34555792 34556032 + 1.16667 NA intron (NR_033665, intron 2 of 3) L1PREC2|LINE|L1 -102306 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 239.834-6 chr4 106078648 106078999 + 1.16667 NA intron (NM_001290768, intron 26 of 26) L1PA11|LINE|L1 -56345 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 192.334-4 chr19 5173344 5173525 + 1.16667 NA Intergenic Charlie25|DNA|hAT-Charlie 167378 NM_002850 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase receptor type S protein-coding 234.667-28 chr6 39527669 39527965 + 1.16667 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -96427 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 203.501-3 chr22 25750397 25750639 + 1.16667 NA intron (NM_001318245, intron 1 of 43) intron (NM_001318245, intron 1 of 43) 8330 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 360.167-5 chr3 54879007 54879500 + 1.16667 NA intron (NM_018398, intron 19 of 37) intron (NM_018398, intron 19 of 37) 22002 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 249.501 chr10 16564215 16564447 + 1.16667 NA Intergenic Intergenic -42452 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 287.833-3 chr11 4799804 4800263 + 1.16667 NA Intergenic MSTB-int|LTR|ERVL-MaLR 4347 NM_001005177 119695 Hs.553563 NM_001005177 ENSG00000279270 OR52R1 OR11-22 olfactory receptor family 52 subfamily R member 1 (gene/pseudogene) protein-coding 228.001-3 chr14 41600694 41600946 + 1.16667 NA Intergenic L1PA13|LINE|L1 -6036 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 299.167-5 chr1 234365824 234366183 + 1.16667 NA Intergenic Intergenic 7400 NR_125962 101927765 Hs.596703 NR_125961 ENSG00000231663 COA6-AS1 - COA6 antisense RNA 1 ncRNA 237.834-3 chr14 50480765 50481175 + 1.16667 NA intron (NM_198794, intron 6 of 31) Tigger3a|DNA|TcMar-Tigger 51599 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 334.834-2 chr12 53776601 53776950 + 1.16667 NA Intergenic Intergenic -19741 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 178.167-6 chr11 110390979 110391226 + 1.16667 NA intron (NR_135100, intron 3 of 3) L1M5|LINE|L1 35988 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 273.334-3 chr16 20044724 20045173 + 1.16667 NA intron (NM_001002911, intron 1 of 1) MIR|SINE|MIR 28830 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 239-17 chr2 226814072 226814418 + 1.16667 NA intron (NM_001349069, intron 3 of 8) intron (NM_001349069, intron 3 of 8) 14086 NM_001349069 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 166.5-29 chr3 33183457 33183701 + 1.16667 NA intron (NM_015551, intron 3 of 4) L1MC1|LINE|L1 35231 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 224.834-5 chr17 19830417 19830705 + 1.16667 NA intron (NM_014683, intron 10 of 26) L1M4c|LINE|L1 37375 NM_014683 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 175.667-29 chr2 236467534 236467763 + 1.16667 NA intron (NR_073043, intron 5 of 19) intron (NR_073043, intron 5 of 19) 36049 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 244.167-5 chr10 67051104 67051332 + 1.16667 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 38952 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 245.667-12 chr2 222613912 222614457 + 1.16667 NA intron (NR_130154, intron 15 of 17) A-rich|Low_complexity|Low_complexity 41908 NM_005687 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 184.167-15 chr17 61826162 61826630 + 1.16667 NA intron (NM_032043, intron 6 of 19) L1PA13|LINE|L1 37163 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 305.334-6 chr11 82570623 82571106 + 1.16667 NA Intergenic L1PB3|LINE|L1 163000 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 273.834-7 chr6 141990858 141991191 + 1.16667 NA Intergenic Intergenic 97775 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 166.5-7 chr11 73351137 73351381 + 1.16667 NA intron (NM_014786, intron 2 of 20) intron (NM_014786, intron 2 of 20) -25140 NM_152222 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 186-9 chr12 92851728 92852009 + 1.16667 NA intron (NM_003566, intron 8 of 28) intron (NM_003566, intron 8 of 28) 77427 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 290.167-15 chr5 116653284 116653661 + 1.16667 NA Intergenic Intergenic -78649 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 210.501-2 chr6 101437321 101437517 + 1.16667 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 38434 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 275.667-6 chr12 130634462 130634910 + 1.16667 NA promoter-TSS (NM_001351232) promoter-TSS (NM_001351232) -766 NM_001351231 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 223.334-3 chr16 61621243 61621490 + 1.16667 NA Intergenic L1MA4|LINE|L1 415072 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 318.5-11 chr5 173459257 173459756 + 1.16667 NA Intergenic Intergenic 112051 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 190-33 chr20 57544225 57544414 + 1.16667 NA Intergenic Intergenic -16791 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 224.001 chr4 170147893 170148120 + 1.16667 NA Intergenic L1MA9|LINE|L1 -57619 NM_001286683 51166 Hs.529735 NM_016228 ENSG00000109576 AADAT KAT2|KATII|KYAT2 aminoadipate aminotransferase protein-coding 239-36 chr7 72161702 72161998 + 1.16667 NA intron (NM_001363460, intron 2 of 5) L1PA11|LINE|L1 175541 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 176-25 chr22 25234172 25234783 + 1.16667 NA Intergenic AluSc8|SINE|Alu 14838 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 163.334-8 chr6 35644951 35645245 + 1.16667 NA intron (NM_001145775, intron 2 of 11) L1MC4|LINE|L1 19691 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 351.001-3 chr5 90474448 90474832 + 1.16667 NA promoter-TSS (NM_006467) promoter-TSS (NM_006467) 131 NM_203406 153364 Hs.64004 NM_203406 ENSG00000176055 MBLAC2 - metallo-beta-lactamase domain containing 2 protein-coding 230.167-19 chr8 144117482 144117788 + 1.16667 NA 3' UTR (NM_001316309, exon 24 of 24) 3' UTR (NM_001316309, exon 24 of 24) 9896 NM_001316309 340390 Hs.98723 NM_032529 ENSG00000179698 WDR97 KIAA1875 WD repeat domain 97 protein-coding 168.5-43 chr7 36090927 36091674 + 1.16667 NA Intergenic Intergenic -4010 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 183.167-26 chr4 109829644 109829809 + 1.16667 NA intron (NM_006583, intron 1 of 6) MIR|SINE|MIR 1754 NM_006583 10692 Hs.658310 NM_006583 ENSG00000180245 RRH - retinal pigment epithelium-derived rhodopsin homolog protein-coding 194.834-11 chr8 85943366 85943617 + 1.16667 NA Intergenic Intergenic -115549 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 311-19 chr7 13824825 13825334 + 1.16667 NA Intergenic Intergenic 161435 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 186.833-25 chr8 119753149 119753546 + 1.16667 NA intron (NM_003184, intron 22 of 25) intron (NM_003184, intron 22 of 25) 79494 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 163.167-29 chr3 53403811 53404085 + 1.16667 NA Intergenic L1MB3|LINE|L1 -56405 NM_001290207 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 190.667-19 chr13 106357315 106357516 + 1.16667 NA Intergenic Intergenic -19149 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 251-31 chr6 109527646 109528120 + 1.16667 NA intron (NM_001145128, intron 29 of 40) intron (NM_001145128, intron 29 of 40) -44646 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 233.834-5 chr4 184745894 184746232 + 1.16667 NA Intergenic Intergenic -11967 NR_104593 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 241.167-7 chr12 42800907 42801277 + 1.16667 NA Intergenic MER4D1|LTR|ERV1 108876 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 363.667 chr10 39279461 39279969 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 583119 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 323.667-14 chr2 76366513 76366928 + 1.16667 NA Intergenic Intergenic -619245 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 203.333-51 chr6 56153886 56154229 + 1.16667 NA intron (NR_134849, intron 10 of 29) MSTD|LTR|ERVL-MaLR -62395 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 248.834 chr10 11146588 11146818 + 1.16667 NA intron (NM_001326334, intron 2 of 13) intron (NM_001326334, intron 2 of 13) -18178 NM_001326348 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 164-39 chr20 21156432 21156699 + 1.16667 NA intron (NM_018474, intron 4 of 12) Tigger3b|DNA|TcMar-Tigger 30483 NM_001163023 55857 Hs.187635 NM_018474 ENSG00000088970 KIZ C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69 kizuna centrosomal protein protein-coding 188.667-36 chr4 39199705 39200085 + 1.16667 NA intron (NM_025132, intron 6 of 36) intron (NM_025132, intron 6 of 36) 17366 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 244.167-13 chr2 65359327 65359633 + 1.16667 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) 7298 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 235-32 chr7 91203712 91204039 + 1.16667 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -60558 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 232.834-10 chr6 1182503 1182763 + 1.16667 NA Intergenic Intergenic -81301 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 205-2 chr10 51101374 51101758 + 1.16667 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 27079 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 213.667-21 chr2 32211278 32211484 + 1.16667 NA intron (NM_001330476, intron 10 of 10) HAL1M8|LINE|L1 45517 NM_001330477 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 260.333-17 chr5 11347751 11348099 + 1.16667 NA intron (NM_001288715, intron 7 of 20) intron (NM_001288715, intron 7 of 20) 240992 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 238.667-8 chr14 61043854 61044315 + 1.16667 NA intron (NR_033344, intron 10 of 16) intron (NR_033344, intron 10 of 16) -62394 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 665.667-2 chr2 112626747 112627773 + 1.16667 NA Intergenic Intergenic 16920 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 311.334-3 chr11 97574568 97574893 + 1.16667 NA Intergenic Intergenic 1066305 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 170-45 chr5 88713805 88714040 + 1.16667 NA intron (NR_146284, intron 3 of 3) intron (NR_146284, intron 3 of 3) -22881 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 264.667-16 chr6 121158156 121158518 + 1.16667 NA intron (NR_104452, intron 27 of 35) L1P4a|LINE|L1 176143 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 210-31 chr4 56417969 56418292 + 1.16667 NA intron (NR_156493, intron 1 of 10) AluSc|SINE|Alu 17485 NR_156493 5471 Hs.331420 NM_002703 ENSG00000128059 PPAT ATASE|GPAT|PRAT phosphoribosyl pyrophosphate amidotransferase protein-coding 220.334-4 chr15 59622553 59622875 + 1.16667 NA TTS (NM_004751) TTS (NM_004751) 10931 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 321.5-12 chr2 143513032 143513512 + 1.16667 NA intron (NM_018460, intron 9 of 13) intron (NM_018460, intron 9 of 13) 383853 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 163.5-23 chr2 55016800 55017147 + 1.16667 NA intron (NM_153828, intron 1 of 6) intron (NM_153828, intron 1 of 6) -6701 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 248.334-11 chr3 54830593 54830885 + 1.16667 NA intron (NM_018398, intron 14 of 37) AluSx|SINE|Alu 70516 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 362.501 chr10 81061082 81061503 + 1.16667 NA Intergenic Intergenic 411495 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 226.5-2 chr1 15431127 15431545 + 1.16667 NA TTS (NM_024329) TTS (NM_024329) -7107 NM_007272 11330 Hs.631869 NM_007272 ENSG00000162438 CTRC CLCR|ELA4 chymotrypsin C protein-coding 236-16 chr4 89901806 89902348 + 1.16667 NA intron (NM_001371403, intron 2 of 8) intron (NM_001371403, intron 2 of 8) 7223 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 208.667-13 chr12 60658035 60658306 + 1.16667 NA Intergenic Intergenic 968800 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 318.667-11 chr5 84600255 84600599 + 1.16667 NA Intergenic LTR1E|LTR|ERV1 -215547 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 248.834-3 chr12 57087619 57088124 + 1.16667 NA Intergenic CpG -1243 NM_001330305 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding 238.167-25 chr7 23254167 23254525 + 1.16667 NA intron (NM_001005340, intron 3 of 10) intron (NM_001005340, intron 3 of 10) 7571 NM_002510 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 182.667-46 chr7 25922896 25923421 + 1.16667 NA Intergenic Intergenic 26828 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 320.334-11 chr6 5003707 5004153 + 1.16667 NA exon (NM_001286133, exon 1 of 7) exon (NM_001286133, exon 1 of 7) 107 NM_001286132 10799 Hs.511756 NM_006638 ENSG00000124787 RPP40 RNASEP1|bA428J1.3 ribonuclease P/MRP subunit p40 protein-coding 171.667-47 chr4 159455857 159456046 + 1.16667 NA Intergenic Intergenic 188142 NM_001351728 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 196.167-28 chr3 171689642 171689846 + 1.16667 NA intron (NM_002662, intron 13 of 26) AluJr|SINE|Alu 120739 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 238.667-5 chr12 2901760 2901998 + 1.16667 NA intron (NM_003324, intron 1 of 10) intron (NM_003324, intron 1 of 10) 10988 NM_003324 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 TUB like protein 3 protein-coding 230-37 chr6 149398822 149399050 + 1.16667 NA intron (NM_001292034, intron 5 of 6) intron (NM_001292034, intron 5 of 6) -1326 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 313.834-4 chr3 40735270 40735608 + 1.16667 NA Intergenic MIRc|SINE|MIR 210479 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 248-15 chr12 9104684 9105090 + 1.16667 NA intron (NM_000014, intron 10 of 35) intron (NM_000014, intron 10 of 35) 11342 NM_001347423 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 245-37 chr8 127004018 127004424 + 1.16667 NA Intergenic Intergenic -8933 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 200.834-5 chr3 192403326 192403590 + 1.16667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 5591 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 215.834-2 chr10 24662290 24662546 + 1.16667 NA intron (NM_001367450, intron 4 of 27) MIRb|SINE|MIR -39575 NR_160025 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 172-55 chr9 124127554 124127739 + 1.16667 NA Intergenic MIRb|SINE|MIR 115878 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 279.667-18 chr3 175961157 175961643 + 1.16667 NA Intergenic Intergenic -185067 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 190.167-23 chr7 96103492 96103863 + 1.16667 NA intron (NM_001278422, intron 15 of 15) AluSc8|SINE|Alu 116079 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 296.001 chr2 415328 415636 + 1.16667 NA Intergenic L1MA9|LINE|L1 77173 NR_146436 727944 NR_146436 ENSG00000223985 LINC01874 - long intergenic non-protein coding RNA 1874 ncRNA 263.167-10 chr3 62187138 62187486 + 1.16667 NA intron (NM_002841, intron 8 of 29) intron (NM_002841, intron 8 of 29) 131635 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 443.501 chr11 13352178 13352640 + 1.16667 NA intron (NM_001351816, intron 3 of 19) intron (NM_001351816, intron 3 of 19) 74682 NM_001351821 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 207.334-11 chr8 122134817 122135042 + 1.16667 NA Intergenic Intergenic 433715 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 255.001-2 chr2 129852811 129853053 + 1.16667 NA Intergenic L1M4|LINE|L1 24559 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 256.334-9 chr5 17179679 17180113 + 1.16667 NA intron (NR_027253, intron 1 of 2) MLT1L|LTR|ERVL-MaLR -23904 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 308.5-13 chr2 11568275 11568814 + 1.16667 NA intron (NM_014668, intron 4 of 32) intron (NM_014668, intron 4 of 32) 25858 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 200.334-2 chr13 28178335 28178569 + 1.16667 NA intron (NM_175854, intron 4 of 18) intron (NM_175854, intron 4 of 18) -39278 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 243.001 chr18 26229134 26229403 + 1.16667 NA intron (NM_005640, intron 1 of 14) intron (NM_005640, intron 1 of 14) 2823 NM_005640 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 204.834-12 chr6 114211613 114211959 + 1.16667 NA intron (NR_125845, intron 8 of 9) intron (NR_125845, intron 8 of 9) -148909 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 165.334-6 chr5 27134267 27134439 + 1.16667 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -95767 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 351.667-5 chr12 11487525 11488109 + 1.16667 NA Intergenic Intergenic -1139 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 288.834-4 chr12 27591949 27592296 + 1.16667 NA intron (NM_001198915, intron 2 of 26) intron (NM_001198915, intron 2 of 26) 67916 NM_177444 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 234.334 chr10 81447422 81447670 + 1.16667 NA Intergenic L1MA2|LINE|L1 -427648 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 378.667-7 chr20 44089819 44090501 + 1.16667 NA Intergenic MLT1H2|LTR|ERVL-MaLR 97028 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 200.667-21 chr17 64110435 64110656 + 1.16667 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 19599 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 195.5-14 chr2 2409134 2409372 + 1.16667 NA Intergenic Intergenic -77978 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 200.834-11 chr9 24884398 24884591 + 1.16667 NA Intergenic Intergenic -338597 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 179.334-3 chr15 68154004 68154306 + 1.16667 NA intron (NM_016166, intron 7 of 13) MIR3|SINE|MIR 51955 NM_001286694 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 328.001 chr1 17124248 17124814 + 1.16667 NA Intergenic MER1A|DNA|hAT-Charlie -5080 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 273.167-2 chr12 130859245 130859507 + 1.16667 NA Intergenic Intergenic -12618 NM_001300796 5901 Hs.10842 NM_006325 ENSG00000132341 RAN ARA24|Gsp1|TC4 RAN, member RAS oncogene family protein-coding 324.167-9 chr16 77766728 77767207 + 1.16667 NA Intergenic MIRc|SINE|MIR -21597 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 173-16 chr14 73014195 73014374 + 1.16667 NA intron (NM_021260, intron 2 of 11) intron (NM_021260, intron 2 of 11) 12822 NM_021260 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 230.5-19 chr20 62355835 62356158 + 1.16667 NA intron (NR_109924, intron 2 of 2) intron (NR_109924, intron 2 of 2) 2986 NR_109924 101928158 Hs.473256 NR_109922 ENSG00000228812 LAMA5-AS1 - LAMA5 antisense RNA 1 ncRNA 188.5-56 chr9 76713714 76714170 + 1.16667 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) -21527 NM_001308049 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 202.501 chr18 77508329 77508817 + 1.16667 NA Intergenic Intergenic 258725 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 245.333-24 chr5 10450863 10451270 + 1.16667 NA intron (NM_001201466, intron 4 of 5) intron (NM_001201466, intron 4 of 5) 9187 NM_031916 83853 Hs.381089 NM_031916 ENSG00000145491 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1 like protein-coding 169.5-16 chr17 65992011 65992209 + 1.16667 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -165567 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 270.334-2 chr1 195737119 195737393 + 1.16667 NA Intergenic MER50-int|LTR|ERV1 351459 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 306.001-9 chr9 71708300 71708874 + 1.16667 NA intron (NM_013390, intron 17 of 23) MIR|SINE|MIR 59926 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 182.167-13 chr2 122406914 122407100 + 1.16667 NA Intergenic Intergenic 651356 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 206-29 chr4 66306069 66306326 + 1.16667 NA Intergenic Intergenic 29373 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 195.833-22 chr5 37965592 37965868 + 1.16667 NA Intergenic Intergenic 17239 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 254.834-3 chr16 1983636 1984048 + 1.16667 NA promoter-TSS (NM_005262) promoter-TSS (NM_005262) -351 NM_005262 2671 Hs.27184 NM_005262 ENSG00000127554 GFER ALR|ERV1|HERV1|HPO|HPO1|HPO2|HSS growth factor, augmenter of liver regeneration protein-coding 234 chr1 84135898 84136232 + 1.16667 NA intron (NM_002731, intron 1 of 9) L1MC3|LINE|L1 -8206 NM_001300916 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 272.167-12 chr2 99477775 99478271 + 1.16667 NA intron (NR_135652, intron 1 of 21) AluSx|SINE|Alu 11994 NM_001037872 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 281.667-3 chr1 171715846 171716555 + 1.16667 NA intron (NM_001185127, intron 4 of 7) intron (NM_001185127, intron 4 of 7) 25865 NR_033704 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 275.834-5 chr4 115880206 115880636 + 1.16667 NA Intergenic Intergenic -419304 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 236.167-4 chr10 105487086 105487382 + 1.16667 NA Intergenic Intergenic 333099 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 320.334-8 chr2 176088451 176088742 + 1.16667 NA Intergenic Intergenic -4125 NM_000523 3239 Hs.152414 NM_000523 ENSG00000128714 HOXD13 BDE|BDSD|HOX4I|SPD|SPD1 homeobox D13 protein-coding 209.834-2 chr1 100565535 100565714 + 1.16667 NA Intergenic THE1D|LTR|ERVL-MaLR 27485 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 241.667-34 chrX 53684374 53685012 + 1.16667 NA intron (NM_031407, intron 2 of 83) L1ME3G|LINE|L1 2026 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 325-10 chr4 171094238 171094583 + 1.16667 NA Intergenic (GTAATA)n|Simple_repeat|Simple_repeat 53808 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 293.334-8 chr5 163309381 163309752 + 1.16667 NA Intergenic Intergenic -128005 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 186.667-20 chr11 81868017 81868321 + 1.16667 NA Intergenic Intergenic 22667 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 165-27 chr2 25383756 25383897 + 1.16667 NA intron (NM_001351394, intron 16 of 17) intron (NM_001351394, intron 16 of 17) -41236 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 262.5 chr1 162538935 162539224 + 1.16667 NA Intergenic Intergenic -22361 NM_001324117 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 187.501 chr5 151125678 151125998 + 1.16667 NA intron (NM_001193544, intron 13 of 24) MIR3|SINE|MIR 15846 NM_001193544 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 211.833-7 chr16 83441959 83442370 + 1.16667 NA intron (NM_001220489, intron 5 of 12) MIR3|SINE|MIR -66182 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 335.167-2 chr11 105626477 105626901 + 1.16667 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 15983 NM_001112812 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 301.334-7 chr21 34654140 34654417 + 1.16667 NA Intergenic AluSz|SINE|Alu -14716 NM_001317009 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 240.001-3 chr20 33470551 33470777 + 1.16667 NA Intergenic MIRb|SINE|MIR -19432 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 165-15 chr13 27195414 27195740 + 1.16667 NA Intergenic Intergenic 23318 NR_046548 100874071 Hs.735400 NR_046548 USP12-AS2 - USP12 antisense RNA 2 (head to head) ncRNA 209.167-3 chr1 222096117 222096311 + 1.16667 NA Intergenic Intergenic -117694 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 287.334-4 chr14 70387072 70387548 + 1.16667 NA intron (NM_001202549, intron 2 of 4) intron (NM_001202549, intron 2 of 4) -27627 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 180.5-28 chr4 46850669 46851091 + 1.16667 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 58365 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 171.5-45 chr8 67459307 67459481 + 1.16667 NA intron (NR_136224, intron 2 of 4) L1MC1|LINE|L1 115560 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 199.167-28 chr8 88842198 88842471 + 1.16667 NA Intergenic Intergenic -514851 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 202.667-46 chrX 77597258 77597560 + 1.16667 NA intron (NM_000489, intron 25 of 34) L1PA16|LINE|L1 150020 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 173.167-32 chr4 100167437 100167633 + 1.16667 NA Intergenic Intergenic -22498 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 342.667-6 chr2 78431359 78431870 + 1.16667 NA Intergenic Intergenic -113917 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 241.5-6 chr12 91200116 91200457 + 1.16667 NA Intergenic Intergenic -17469 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 179-13 chr12 24720998 24721290 + 1.16667 NA Intergenic L2b|LINE|L2 -136976 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 348.167-9 chr4 97989016 97989511 + 1.16667 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 154213 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 271.5-25 chr3 98856501 98856990 + 1.16667 NA intron (NM_080927, intron 2 of 15) L1MC4a|LINE|L1 44950 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 217-7 chr15 53884016 53884314 + 1.16667 NA Intergenic MIR3|SINE|MIR -94276 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 357.667-11 chr4 44162754 44163298 + 1.16667 NA Intergenic L1M4|LINE|L1 145964 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 173.667-32 chr20 46303538 46303844 + 1.16667 NA intron (NM_021248, intron 1 of 11) intron (NM_021248, intron 1 of 11) 4807 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 166.334-9 chrX 76321263 76321439 + 1.16667 NA Intergenic L1M1|LINE|L1 -106359 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 552.167-2 chr9 128067274 128068190 + 1.16667 NA promoter-TSS (NM_197956) promoter-TSS (NM_197956) -412 NM_197956 203245 Hs.373606 NM_197956 ENSG00000171169 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 187-50 chr8 139942409 139942626 + 1.16667 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 158018 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 270.334-6 chr17 50023228 50023613 + 1.16667 NA Intergenic (TGCA)n|Simple_repeat|Simple_repeat -28196 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 217.167-3 chr1 40126041 40126408 + 1.16667 NA Intergenic Intergenic -28754 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 218.667-33 chr6 148974074 148974274 + 1.16667 NA intron (NM_005715, intron 5 of 7) intron (NM_005715, intron 5 of 7) -9490 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 280-13 chr19 4342734 4343078 + 1.16667 NA promoter-TSS (NM_032868) promoter-TSS (NM_032868) -621 NM_001159846 84954 Hs.321689 NM_032868 ENSG00000008382 MPND - MPN domain containing protein-coding 210.667-40 chr5 135472496 135472765 + 1.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie -20279 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 381.667-6 chr4 46446117 46446542 + 1.16667 NA Intergenic Intergenic -56201 NM_000807 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 272.834-10 chr7 54522107 54522418 + 1.16667 NA Intergenic L1PB1|LINE|L1 -20063 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 301.334-8 chr5 177005932 177006536 + 1.16667 NA intron (NM_001199297, intron 1 of 15) CpG 208 NM_016290 51720 Hs.232721 NM_016290 ENSG00000087206 UIMC1 RAP80|X2HRIP110 ubiquitin interaction motif containing 1 protein-coding 280.167-3 chr12 79425952 79426374 + 1.16667 NA intron (NM_001291901, intron 8 of 9) intron (NM_001291901, intron 8 of 9) 6906 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 196.334-5 chr14 65528872 65529083 + 1.16667 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 57875 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 211.833-2 chr1 208476300 208476609 + 1.16667 NA Intergenic Intergenic -232070 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 325.5-24 chrX 49291427 49292042 + 1.16667 NA Intergenic Intergenic -11912 NM_001098413 102724473 NM_001098413 ENSG00000215274 GAGE10 GAGE-10 G antigen 10 protein-coding 266.833-4 chr12 79403661 79404096 + 1.16667 NA intron (NM_001291901, intron 8 of 9) MER5A|DNA|hAT-Charlie -15379 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 206.667-6 chr10 117320014 117320241 + 1.16667 NA intron (NM_173791, intron 2 of 4) intron (NM_173791, intron 2 of 4) 55313 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 181.5-48 chr7 6589711 6589970 + 1.16667 NA promoter-TSS (NM_001303039) promoter-TSS (NM_001303039) -181 NM_024067 79034 Hs.487511 NM_024067 ENSG00000146576 C7orf26 - chromosome 7 open reading frame 26 protein-coding 327.334-2 chr13 24683608 24684087 + 1.16667 NA intron (NM_001676, intron 2 of 22) intron (NM_001676, intron 2 of 22) 3436 NM_001185085 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 167.334-8 chr4 77214901 77215082 + 1.16667 NA Intergenic Intergenic 57784 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 286.667-20 chr5 874828 875116 + 1.16667 NA intron (NM_001009877, intron 12 of 15) L1MEc|LINE|L1 17550 NR_134296 65980 Hs.449278 NM_023924 ENSG00000028310 BRD9 LAVS3040|PRO9856 bromodomain containing 9 protein-coding 422.001 chr1 210395629 210396084 + 1.16667 NA intron (NM_001170564, intron 4 of 9).2 (ATCC)n|Simple_repeat|Simple_repeat 66490 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 232.001-2 chr12 56103758 56103968 + 1.16667 NA promoter-TSS (NM_006191) promoter-TSS (NM_006191) -696 NM_006191 5036 Hs.524498 NM_006191 ENSG00000170515 PA2G4 EBP1|HG4-1|p38-2G4 proliferation-associated 2G4 protein-coding 193.834-4 chr7 6562007 6562263 + 1.16667 NA Intergenic Intergenic -10699 NM_001145118 392862 Hs.512174 NM_001145118 ENSG00000215045 GRID2IP DELPHILIN Grid2 interacting protein protein-coding 173.167-26 chr3 104830405 104830668 + 1.16667 NA Intergenic AluJr|SINE|Alu -536177 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 212.667-22 chr2 8063715 8064007 + 1.16667 NA intron (NR_034135, intron 7 of 8) AluJb|SINE|Alu -87047 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 221.833-5 chr11 58616806 58617061 + 1.16667 NA intron (NM_001197051, intron 10 of 10) intron (NM_001197051, intron 10 of 10) -5732 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 236.333-26 chr5 123423911 123424315 + 1.16667 NA promoter-TSS (NM_001166226) promoter-TSS (NM_001166226) -521 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 226.501 chr1 169970848 169971297 + 1.16667 NA intron (NM_014970, intron 17 of 19) intron (NM_014970, intron 17 of 19) -77113 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 350.168 chr2 11245294 11245641 + 1.16667 NA intron (NM_001321643, intron 4 of 32) L1ME3G|LINE|L1 90000 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 192.167-22 chr21 23689591 23690107 + 1.16667 NA Intergenic MLT2B2|LTR|ERVL -305014 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 182.5-27 chr4 101982127 101982573 + 1.16667 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 168508 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 169.5-23 chr2 199861311 199861586 + 1.16667 NA Intergenic Intergenic -10275 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 269.667-11 chr2 36791030 36791362 + 1.16667 NA intron (NM_001177969, intron 11 of 14) intron (NM_001177969, intron 11 of 14) 94489 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 200.167-27 chr7 54674802 54675036 + 1.16667 NA Intergenic MLT1J1|LTR|ERVL-MaLR 84292 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 200.667-38 chr4 42198787 42199017 + 1.16667 NA Intergenic Intergenic -46247 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 170.333-16 chr14 52955939 52956141 + 1.16667 NA Intergenic L1MB7|LINE|L1 -4943 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 225.5-19 chr4 74624603 74625041 + 1.16667 NA Intergenic Intergenic 169701 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 208.333-35 chr6 91135314 91135604 + 1.16667 NA Intergenic Intergenic -386201 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 174-19 chr17 79970661 79970828 + 1.16667 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) -19891 NM_001271845 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 281.334-6 chr14 27176050 27176600 + 1.16667 NA Intergenic Intergenic 267683 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 318.834-11 chr7 41702571 41703264 + 1.16667 NA intron (NM_002192, intron 1 of 2) intron (NM_002192, intron 1 of 2) 173 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 268.833-2 chr1 39977329 39977855 + 1.16667 NA Intergenic Tigger17a|DNA|TcMar-Tigger 22447 NM_001287809 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 283.834-4 chr19 35457873 35458266 + 1.16667 NA Intergenic Intergenic 9812 NM_001370087 2867 Hs.248056 NM_005306 ENSG00000126262 FFAR2 FFA2R|GPR43 free fatty acid receptor 2 protein-coding 334.5 chr1 86563002 86563537 + 1.16667 NA intron (NR_024602, intron 3 of 12) intron (NR_024602, intron 3 of 12) 16191 NM_012128 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 239.667-32 chr4 32988719 32989120 + 1.16667 NA Intergenic Intergenic 637881 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 242.167 chr1 17386152 17386496 + 1.16667 NA intron (NM_207421, intron 6 of 15).2 intron (NM_207421, intron 6 of 15).2 14128 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 184.167-2 chr1 232952637 232952886 + 1.16667 NA intron (NR_138027, intron 1 of 4) intron (NR_138027, intron 1 of 4) 1919 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 208.333-10 chr10 98814120 98814454 + 1.16667 NA intron (NM_021828, intron 3 of 11) L1M5|LINE|L1 110281 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 183.834-2 chr6 63566382 63566599 + 1.16667 NA Intergenic LTR42|LTR|ERVL -5522 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 273.001-2 chr11 63796929 63797237 + 1.16667 NA Intergenic MER1B|DNA|hAT-Charlie -16373 NM_138471 144097 Hs.502793 NM_138471 ENSG00000168005 SPINDOC C11orf84|SPIN-DOC spindlin interactor and repressor of chromatin binding protein-coding 205.667-25 chr22 19785087 19785372 + 1.16667 NA 3' UTR (NM_053004, exon 8 of 8) 3' UTR (NM_053004, exon 8 of 8) 28526 NM_080646 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 201.167-3 chr1 220768097 220768316 + 1.16667 NA intron (NM_001331042, intron 4 of 4) MER112|DNA|hAT-Charlie -18707 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 274.5-10 chr17 61554870 61555262 + 1.16667 NA Intergenic Intergenic 36153 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 341.501-2 chr12 124398445 124398906 + 1.16667 NA intron (NM_001077261, intron 17 of 47) MER20|DNA|hAT-Charlie -61433 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 405.167-4 chr4 184250569 184251236 + 1.16667 NA Intergenic AluSp|SINE|Alu -33029 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 219.667-37 chr9 137294488 137294911 + 1.16667 NA Intergenic Intergenic 7572 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 264.667-9 chr2 70925027 70925336 + 1.16667 NA intron (NM_012476, intron 2 of 2) L2a|LINE|L2 -10719 NM_001692 525 Hs.64173 NM_001692 ENSG00000116039 ATP6V1B1 ATP6B1|RTA1B|VATB|VMA2|VPP3 ATPase H+ transporting V1 subunit B1 protein-coding 165-12 chr12 15318557 15318910 + 1.16667 NA Intergenic Intergenic -3775 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 219.834-8 chr14 48508961 48509377 + 1.16667 NA Intergenic Intergenic -714155 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 311.167-7 chr2 145209160 145209593 + 1.16667 NA Intergenic L1PA7|LINE|L1 541409 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 277.667-20 chr3 36488988 36489357 + 1.16667 NA intron (NM_001292049, intron 3 of 8) L2c|LINE|L2 108685 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 246.167-23 chr22 26654014 26654346 + 1.16667 NA Intergenic MER87B|LTR|ERV1 -3302 NR_033319 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript ncRNA 219.334-2 chr11 47947163 47947464 + 1.16667 NA Intergenic Intergenic -33246 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 406.001-2 chr2 33196553 33196968 + 1.16667 NA intron (NM_206943, intron 7 of 33) intron (NM_206943, intron 7 of 33) 62163 NM_001166266 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 330-21 chr7 31610754 31611131 + 1.16667 NA intron (NM_194300, intron 8 of 12) L1M4|LINE|L1 57940 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 198.167-22 chr3 143466650 143466897 + 1.16667 NA intron (NM_173653, intron 12 of 15) L2c|LINE|L2 124527 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 274.167-5 chr12 49234242 49234570 + 1.16667 NA intron (NM_001303114, intron 1 of 3) intron (NM_001303114, intron 1 of 3) 6387 NM_001303115 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 192.5-30 chr3 45486922 45487220 + 1.16667 NA intron (NM_001368263, intron 10 of 20) intron (NM_001368263, intron 10 of 20) 22474 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 255.667-17 chr8 15389158 15389488 + 1.16667 NA Intergenic Intergenic -150764 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 175.5-7 chr10 24578113 24578559 + 1.16667 NA Intergenic L1MEd|LINE|L1 44507 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 261.167-13 chr19 39413799 39414225 + 1.16667 NA intron (NM_001351694, intron 1 of 17) intron (NM_001351694, intron 1 of 17) 233 NM_001351694 64857 Hs.631574 NM_022835 ENSG00000090924 PLEKHG2 ARHGEF42|CLG|CTB-60E11.4|LDAMD pleckstrin homology and RhoGEF domain containing G2 protein-coding 285.834-5 chr2 122861328 122861792 + 1.16667 NA Intergenic Intergenic 211921 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 217.5-13 chr3 23826275 23826553 + 1.16667 NA intron (NM_003341, intron 3 of 5) intron (NM_003341, intron 3 of 5) 15960 NM_001202476 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 276.667-20 chr6 47220317 47220659 + 1.16667 NA Intergenic L1MB1|LINE|L1 89417 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 224.667-26 chr2 173336634 173337127 + 1.16667 NA Intergenic Intergenic -17992 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 247.5-17 chr17 43726153 43726599 + 1.16667 NA Intergenic Intergenic 32415 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 270.5-33 chr7 40148646 40149028 + 1.16667 NA intron (NM_024728, intron 1 of 14) LTR29|LTR|ERV1 13861 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 293.334-2 chr12 38486549 38486870 + 1.16667 NA Intergenic Intergenic 169935 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 220.001 chr1 196741233 196741526 + 1.16667 NA intron (NM_000186, intron 18 of 21) THE1D|LTR|ERVL-MaLR -33421 NM_021023 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 237.5-32 chr3 161606567 161606858 + 1.16667 NA Intergenic Intergenic 109904 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 222.167-16 chr16 78019100 78019456 + 1.16667 NA Intergenic L2c|LINE|L2 -3270 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 304.167-4 chr14 76919198 76919546 + 1.16667 NA Intergenic Intergenic -40266 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 215.167-34 chr9 103368181 103368511 + 1.16667 NA Intergenic Intergenic -43313 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 167.167-13 chr11 100682097 100682409 + 1.16667 NA Intergenic AluSq2|SINE|Alu -5035 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 244.5-10 chr14 62253028 62253413 + 1.16667 NA Intergenic Intergenic -113247 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 240.834 chr1 112025845 112026147 + 1.16667 NA Intergenic Intergenic 35460 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 171.334-4 chr16 77235034 77235222 + 1.16667 NA Intergenic Intergenic 35720 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 338.167-10 chrX 48521481 48521906 + 1.16667 NA promoter-TSS (NM_006579) promoter-TSS (NM_006579) -115 NM_006579 10682 Hs.30619 NM_006579 ENSG00000147155 EBP CDPX2|CHO2|CPX|CPXD|MEND EBP cholestenol delta-isomerase protein-coding 374.667-4 chr10 48242793 48243261 + 1.16667 NA intron (NM_001318191, intron 2 of 26) intron (NM_001318191, intron 2 of 26) 8730 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 218.334-10 chr7 27137503 27138014 + 1.16667 NA Intergenic Intergenic -2606 NR_038832 100133311 Hs.610216 NR_038831 ENSG00000254369 HOXA-AS3 HOXA6as HOXA cluster antisense RNA 3 ncRNA 282.167 chr1 88588795 88589221 + 1.16667 NA intron (NR_110682, intron 1 of 3) L1MA3|LINE|L1 -95136 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 350.501-4 chr7 30748612 30749104 + 1.16667 NA Intergenic Intergenic -3277 NR_037598 100526825 Hs.660192 NR_037598 ENSG00000254959 INMT-MINDY4 INMT-FAM188B INMT-MINDY4 readthrough (NMD candidate) ncRNA 165.5-33 chr4 135837787 135837942 + 1.16667 NA Intergenic Intergenic 50229 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 194.5-23 chr15 66932066 66932261 + 1.16667 NA intron (NR_135687, intron 2 of 2) intron (NR_135687, intron 2 of 2) 24352 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 394.5-3 chr12 38940162 38940616 + 1.16667 NA Intergenic Intergenic -34798 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 205.334-2 chr1 58729195 58729500 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -29285 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 180.167-3 chr10 16999070 16999270 + 1.16667 NA intron (NM_001081, intron 28 of 66) intron (NM_001081, intron 28 of 66) 130647 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 298.334 chr1 79573644 79574029 + 1.16667 NA Intergenic Intergenic -567106 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 302.501-6 chr8 142719363 142719679 + 1.16667 NA intron (NR_038925, intron 1 of 2) L1MEg|LINE|L1 7452 NR_038925 100288181 Hs.716823 NR_038925 ENSG00000253741 LNCOC1 Lnc-OC1 lncRNA associated with ovarian cancer 1 ncRNA 177.667-17 chr15 76531592 76531888 + 1.16667 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -54907 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 296.167-5 chr11 112056278 112056681 + 1.16667 NA intron (NM_001931, intron 11 of 13) L1MB7|LINE|L1 17692 NM_001082619 120379 Hs.420662 NM_138789 ENSG00000150773 PIH1D2 - PIH1 domain containing 2 protein-coding 191.5-37 chr4 108044389 108044581 + 1.16667 NA Intergenic Intergenic 39821 NM_001331027 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 257.5-20 chr20 44807961 44808362 + 1.16667 NA intron (NM_001205317, intron 1 of 5) (CA)n|Simple_repeat|Simple_repeat 2385 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 294.667-17 chr2 167943632 167943965 + 1.16667 NA Intergenic Intergenic -2654 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 408.501-2 chr2 68466925 68467511 + 1.16667 NA promoter-TSS (NM_173545) promoter-TSS (NM_173545) 76 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 177-16 chr14 68157582 68157899 + 1.16667 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 334148 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 170-41 chr4 91666920 91667081 + 1.16667 NA Intergenic Intergenic 610302 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 298.167-9 chr20 32778597 32779074 + 1.16667 NA intron (NM_175848, intron 1 of 21) AluJr|SINE|Alu -1017 NM_175850 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 167-35 chr5 158348599 158348783 + 1.16667 NA intron (NR_109888, intron 4 of 6) intron (NR_109888, intron 4 of 6) 61082 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 197.834-11 chr8 6076953 6077137 + 1.16667 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 329503 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 176.5-11 chr15 85502363 85502529 + 1.16667 NA intron (NM_007200, intron 2 of 36) intron (NM_007200, intron 2 of 36) -117504 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 175.667-25 chr2 22912805 22913119 + 1.16667 NA Intergenic Intergenic 376483 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 257.167-6 chr2 240241739 240241995 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -101209 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 286.334-2 chr2 6027487 6027865 + 1.16667 NA Intergenic Intergenic 45698 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 224.667-9 chr10_GL383545v1_alt 40876 41275 + 1.16667 NA intron (NR_138082, intron 1 of 1) intron (NR_138082, intron 1 of 1) 38057 NR_138082 101060171 Hs.568842 NR_138082 ARMC4P1 - armadillo repeat containing 4 pseudogene 1 pseudo 264.334-7 chr21 19896184 19896755 + 1.16667 NA intron (NR_146910, intron 2 of 2) intron (NR_146910, intron 2 of 2) 3286 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 351.167 chr19 15836835 15837190 + 1.16667 NA TTS (NR_015379) TTS (NR_015379) 8065 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36 urothelial cancer associated 1 ncRNA 359.167-6 chr5 64210535 64211089 + 1.16667 NA intron (NM_001113561, intron 2 of 7) LTR26|LTR|ERV1 44969 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 202-29 chr4 88547366 88547593 + 1.16667 NA Intergenic L1MB8|LINE|L1 23669 NR_134663 101929134 Hs.734064 NR_134662 ENSG00000285122 PIGY-DT - PIGY divergent transcript ncRNA 346 chr12 59151057 59151574 + 1.16667 NA Intergenic Intergenic -230777 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 389.333-5 chr5 13985661 13986548 + 1.16667 NA Intergenic Intergenic -41624 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 183.167-23 chr3 97793374 97793538 + 1.16667 NA intron (NR_136600, intron 8 of 9) MamSINE1|SINE|tRNA-RTE -28555 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 199.5-6 chr11 11037615 11038001 + 1.16667 NA Intergenic MIR|SINE|MIR 179591 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 433-13 chr8 116926222 116927334 + 1.16667 NA Intergenic Intergenic -11429 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 334.667-14 chr8 9995714 9996093 + 1.16667 NA Intergenic Intergenic -58389 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 247.001-3 chr16 5582657 5582974 + 1.16667 NA Intergenic Intergenic 33435 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 262-9 chr14 63973658 63974064 + 1.16667 NA intron (NM_015180, intron 11 of 114) L2c|LINE|L2 120857 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 177.834-4 chr5 74233016 74233182 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie 75226 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 291.667-15 chr8 75647947 75648400 + 1.16667 NA Intergenic Intergenic 108205 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 414.834-4 chr4 76430657 76431189 + 1.16667 NA Intergenic Intergenic -4306 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 192.5-53 chr9 28559744 28559938 + 1.16667 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 159464 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 244.167-29 chrX 83263930 83264214 + 1.16667 NA Intergenic L1PA11|LINE|L1 -244218 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 300.834-14 chr8 135730032 135730376 + 1.16667 NA Intergenic Intergenic 272748 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 183-23 chr18 49322207 49322677 + 1.16667 NA intron (NM_001353214, intron 8 of 17) intron (NM_001353214, intron 8 of 17) 138203 NM_001353215 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 215.667-29 chr3 38003523 38003761 + 1.16667 NA intron (NM_015873, intron 14 of 18) intron (NM_015873, intron 14 of 18) 9504 NR_163266 50853 Hs.103665 NM_015873 ENSG00000136059 VILL - villin like protein-coding 305.5-12 chr4 5855738 5856301 + 1.16667 NA intron (NM_001014809, intron 4 of 13) intron (NM_001014809, intron 4 of 13) 31794 NM_001288662 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 320.834-5 chr15 80350444 80350886 + 1.16667 NA Intergenic MER106A|DNA|hAT-Charlie -8860 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 163.334-4 chr3 102060689 102060882 + 1.16667 NA Intergenic Intergenic -102920 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 299.167-14 chr22 28325606 28325885 + 1.16667 NA intron (NM_001145418, intron 2 of 22) L1ME1|LINE|L1 -134124 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 172.167-27 chr6 132112012 132112486 + 1.16667 NA Intergenic L1ME3A|LINE|L1 3014 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 303.167-4 chr4 42569446 42569917 + 1.16667 NA intron (NM_006095, intron 14 of 36) intron (NM_006095, intron 14 of 36) 87424 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 241.001-2 chr10 28240577 28240804 + 1.16667 NA intron (NR_134518, intron 1 of 16) intron (NR_134518, intron 1 of 16) 41433 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 172.5-33 chr21 34202162 34202374 + 1.16667 NA Intergenic Intergenic 21591 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 283.834-7 chr6 47078089 47078473 + 1.16667 NA Intergenic Intergenic -35949 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 198.5-30 chr3 85725887 85726159 + 1.16667 NA promoter-TSS (NM_153184) promoter-TSS (NM_153184) -459 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 172-39 chr4 186570315 186570475 + 1.16667 NA Intergenic Intergenic -14828 NM_005958 4543 Hs.243467 NM_005958 ENSG00000168412 MTNR1A MEL-1A-R|MT1 melatonin receptor 1A protein-coding 236.501 chr12 117119946 117120164 + 1.16667 NA intron (NR_120464, intron 2 of 2) MIR|SINE|MIR 20588 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 281.167-8 chr14 61683433 61683884 + 1.16667 NA intron (NR_047116, intron 1 of 1) intron (NR_047116, intron 1 of 1) -11855 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 279-24 chr22 32669016 32669348 + 1.16667 NA intron (NM_003490, intron 6 of 13) MIR|SINE|MIR -131634 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 191.834-3 chr12 124898643 124898922 + 1.16667 NA Intergenic Intergenic 15868 NM_021009 7316 Hs.520348 NM_021009 ENSG00000150991 UBC HMG20 ubiquitin C protein-coding 407.667-4 chr10 92574555 92575148 + 1.16667 NA promoter-TSS (NM_001322793) promoter-TSS (NM_001322793) -756 NM_001322794 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 236.834-4 chr16 9184822 9185076 + 1.16667 NA Intergenic L1PA17|LINE|L1 93305 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 202.834-2 chr3 38206311 38206567 + 1.16667 NA intron (NM_005109, intron 4 of 17) intron (NM_005109, intron 4 of 17) 40902 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 211-18 chr17 12545866 12546138 + 1.16667 NA Intergenic Intergenic -3966 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 283.334-12 chr5 127881870 127882702 + 1.16667 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 178897 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 181.667-20 chr17 73923044 73923258 + 1.16667 NA Intergenic L1MEd|LINE|L1 -94614 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 195.501 chr13 111474376 111474546 + 1.16667 NA Intergenic Intergenic -121548 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 349.333 chr1 61853218 61853768 + 1.16667 NA intron (NM_001350145, intron 17 of 43) intron (NM_001350145, intron 17 of 43) 7418 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 212.834-10 chr5 150571791 150572103 + 1.16667 NA Intergenic Intergenic -29129 NM_001166208 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 220.5-8 chr12 33442369 33442697 + 1.16667 NA Intergenic Intergenic -2714 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 187-42 chr7 87916686 87917036 + 1.16667 NA Intergenic L1MC|LINE|L1 -17282 NM_004194 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 168.667-44 chr6 54267778 54268272 + 1.16667 NA Intergenic L1ME5|LINE|L1 -40416 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 283-16 chr6 56517427 56517822 + 1.16667 NA intron (NM_001144770, intron 61 of 94) intron (NM_001144770, intron 61 of 94) -123496 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 303.001-3 chr7 109815987 109816508 + 1.16667 NA Intergenic L1MEf|LINE|L1 143966 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 247.5-23 chr2 131492732 131493026 + 1.16667 NA promoter-TSS (NR_026922) promoter-TSS (NR_026922) 66 NR_026922 150776 Hs.535622 NR_026922 ENSG00000152117 LOC150776 - sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene pseudo 356.334-3 chr12 48887315 48887815 + 1.16667 NA Intergenic MIR|SINE|MIR -16568 NM_033124 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 293.334-4 chr13 113105055 113105416 + 1.16667 NA promoter-TSS (NM_001267554) promoter-TSS (NM_001267554) -553 NM_001267554 2155 Hs.36989 NM_000131 ENSG00000057593 F7 SPCA coagulation factor VII protein-coding 287.667-21 chr4 138035705 138036227 + 1.16667 NA intron (NR_037866, intron 8 of 10) intron (NR_037866, intron 8 of 10) -53048 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 216.334-9 chr9 133177684 133178112 + 1.16667 NA Intergenic ERV24_Prim-int|LTR|ERV1 -13984 NM_001288572 26301 Hs.495419 NM_021996 ENSG00000148288 GBGT1 A3GALNT|FS|UNQ2513 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) protein-coding 351.167-3 chr4 154082986 154083343 + 1.16667 NA Intergenic Intergenic -294081 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 184.333 chr1 45840085 45840364 + 1.16667 NA intron (NM_001324320, intron 3 of 29) intron (NM_001324320, intron 3 of 29) -24124 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 235.167-27 chr6 33781718 33782067 + 1.16667 NA intron (NM_181336, intron 3 of 8) intron (NM_181336, intron 3 of 8) 5050 NM_001143944 221496 Hs.444845 NM_181336 ENSG00000161904 LEMD2 CTRCT42|LEM2|NET25|dJ482C21.1 LEM domain containing 2 protein-coding 243.834-5 chr4 58486019 58486375 + 1.16667 NA Intergenic L1MC1|LINE|L1 50131 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 331.501 chr1 225459606 225460007 + 1.16667 NA Intergenic L2|LINE|L2 -30951 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 254.834-5 chr6 42665384 42665829 + 1.16667 NA intron (NM_015255, intron 33 of 46) intron (NM_015255, intron 33 of 46) 56991 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 216.834-5 chr19 41448871 41449098 + 1.16667 NA Intergenic MLT2B2|LTR|ERVL 5828 NM_001130514 100170765 Hs.649452 NM_001130514 ENSG00000204978 ERICH4 C19orf69 glutamate rich 4 protein-coding 217-21 chr21 23447648 23447934 + 1.16667 NA Intergenic Intergenic -62956 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 247.334-4 chr8 81368036 81368535 + 1.16667 NA Intergenic AluJb|SINE|Alu 79154 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 195.5-19 chr2 62566787 62567047 + 1.16667 NA Intergenic Intergenic -60722 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 317.333-15 chr9 25613089 25613650 + 1.16667 NA Intergenic Intergenic 65489 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 251.501 chr12 8780650 8781036 + 1.16667 NA intron (NR_147950, intron 8 of 8) intron (NR_147950, intron 8 of 8) -41778 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 164.834-3 chr12 85507269 85507467 + 1.16667 NA Intergenic Intergenic 227148 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 185.167-19 chr20 48854760 48855096 + 1.16667 NA Intergenic MIRb|SINE|MIR -26929 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 305.834-5 chr2 152215772 152216141 + 1.16667 NA Intergenic Intergenic -40193 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 205.334-4 chr1 156223142 156223355 + 1.16667 NA intron (NM_001199664, intron 1 of 4) intron (NM_001199664, intron 1 of 4) 10260 NM_007221 11243 Hs.530479 NM_007221 ENSG00000160783 PMF1 - polyamine modulated factor 1 protein-coding 201.501-2 chr5 110419404 110419619 + 1.16667 NA TTS (NM_001039763) TTS (NM_001039763) 94404 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 194.334-8 chr6 155530490 155530662 + 1.16667 NA Intergenic Intergenic 15732 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 314.833-7 chr18 68718323 68718748 + 1.16667 NA intron (NM_001093729, intron 2 of 9) L1ME3A|LINE|L1 3319 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 184.5-35 chr3 118298979 118299231 + 1.16667 NA Intergenic L1MEg|LINE|L1 -342663 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 255.834-4 chr19 29564159 29564516 + 1.16667 NA TTS (NM_001146339) TTS (NM_001146339) 37753 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 224.834-4 chr14 52365112 52365381 + 1.16667 NA Intergenic Intergenic 50934 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 191.667-21 chr19 12583408 12583671 + 1.16667 NA exon (NM_020714, exon 3 of 5) exon (NM_020714, exon 3 of 5) 27274 NM_020714 57474 Hs.655860 NM_020714 ENSG00000188033 ZNF490 - zinc finger protein 490 protein-coding 214.334-7 chr3 111931922 111932122 + 1.16667 NA intron (NM_001134437, intron 6 of 17) intron (NM_001134437, intron 6 of 17) -47004 NM_001272069 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 166.667-31 chr2 182080594 182080834 + 1.16667 NA intron (NM_001261425, intron 4 of 5) intron (NM_001261425, intron 4 of 5) 94861 NM_001261424 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 291-9 chr11 14257254 14257678 + 1.16667 NA intron (NM_006108, intron 10 of 15) intron (NM_006108, intron 10 of 15) 101019 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 209-27 chr4 85468600 85468821 + 1.16667 NA Intergenic Intergenic -6440 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 174.167 chr1 67735212 67735674 + 1.16667 NA intron (NM_018841, intron 2 of 3) MIR|SINE|MIR 50242 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 167-8 chr11 48249985 48250234 + 1.16667 NA Intergenic Intergenic 5005 NM_001004727 119764 Hs.553565 NM_001004727 ENSG00000172208 OR4X2 OR11-105 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) protein-coding 236.334-5 chr14 66635927 66636211 + 1.16667 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 128662 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 211.667-10 chr15 66500809 66501195 + 1.16667 NA TTS (NR_002443) TTS (NR_002443) 316 NR_002443 595100 NR_002443 ENSG00000199574 SNORD18C U18C small nucleolar RNA, C/D box 18C snoRNA 191.334-9 chr5 53871278 53871465 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie -51689 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 395.834 chr9 105156774 105157496 + 1.16667 NA Intergenic Intergenic -87470 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 280-2 chr1 81270139 81270546 + 1.16667 NA Intergenic Intergenic -35850 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 241.167-26 chr9 97753375 97753767 + 1.16667 NA intron (NR_147055, intron 5 of 10) L1MD3|LINE|L1 -56162 NR_149091 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 312.334-6 chr8 121824167 121824464 + 1.16667 NA Intergenic Intergenic -182875 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 300.501-2 chr9 134254412 134254669 + 1.16667 NA Intergenic Intergenic 40857 NR_146518 105376310 Hs.573484 NR_146518 ENSG00000223729 LINC02247 - long intergenic non-protein coding RNA 2247 ncRNA 249.667-28 chr7 46546717 46547094 + 1.16667 NA Intergenic L1ME1|LINE|L1 150217 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 291.167-9 chr2 110216878 110217273 + 1.16667 NA intron (NM_001355251, intron 4 of 8) intron (NM_001355251, intron 4 of 8) -12062 NM_207181 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 230.834-4 chr2 182887036 182887400 + 1.16667 NA Intergenic L2a|LINE|L2 -20581 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 166.834-5 chr7 30142937 30143121 + 1.16667 NA intron (NM_152793, intron 1 of 2) L4_A_Mam|LINE|RTE-X 8043 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 632.667-2 chr4 49148909 49149834 + 1.16667 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 162729 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 290.167-13 chr5 27702567 27703103 + 1.16667 NA Intergenic MLT1E2|LTR|ERVL-MaLR 230543 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 249.167-24 chr6 149865534 149865975 + 1.16667 NA intron (NR_045126, intron 1 of 1) intron (NR_045126, intron 1 of 1) -1395 NM_032832 84918 Hs.408355 NM_032832 ENSG00000120256 LRP11 MANSC3|bA350J20.3 LDL receptor related protein 11 protein-coding 240.167-5 chr1 158984986 158985287 + 1.16667 NA Intergenic L1PA15|LINE|L1 -14840 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 223.833-3 chr1 147433724 147434088 + 1.16667 NA intron (NR_038423, intron 3 of 3) L2|LINE|L2 83969 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 264.167-23 chr8 120022549 120022881 + 1.16667 NA intron (NM_022783, intron 8 of 8) FLAM_C|SINE|Alu -102387 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 189.5-28 chr4 33687280 33687510 + 1.16667 NA Intergenic LTR40a|LTR|ERVL 352498 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 221.834-7 chr22 44704756 44705039 + 1.16667 NA intron (NM_181334, intron 1 of 14) intron (NM_181334, intron 1 of 14) 2693 NM_181333 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 195.167-25 chr2 49911898 49912260 + 1.16667 NA Intergenic Tigger3a|DNA|TcMar-Tigger 62124 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 278.334-4 chr11 111436523 111436821 + 1.16667 NA Intergenic Intergenic -18486 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 227.334-14 chr5 110590124 110590495 + 1.16667 NA intron (NM_001039763, intron 10 of 13) MER1B|DNA|hAT-Charlie -76394 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 253.334-5 chr14 20531622 20531902 + 1.16667 NA Intergenic LTR85a|LTR|Gypsy? 21290 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 205.167-23 chr4 107991278 107991629 + 1.16667 NA intron (NM_005327, intron 1 of 7) intron (NM_005327, intron 1 of 7) 1564 NM_005327 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 419.833-2 chr15 58587125 58587831 + 1.16667 NA Intergenic Intergenic -88743 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 220.667-17 chr15 70715822 70716134 + 1.16667 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) -13696 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 344.001 chr2 28584171 28584796 + 1.16667 NA intron (NR_138141, intron 5 of 35) intron (NR_138141, intron 5 of 35) 18126 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 201.5-14 chr15 63544678 63545017 + 1.16667 NA intron (NM_006537, intron 3 of 14) intron (NM_006537, intron 3 of 14) 40254 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 208-37 chr6 25542090 25542291 + 1.16667 NA intron (NM_001173977, intron 26 of 36) intron (NM_001173977, intron 26 of 36) -110025 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 332.167-5 chr3 48107381 48107816 + 1.16667 NA Intergenic MIRb|SINE|MIR -18750 NM_001134364 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 250.501 chr1 71567689 71567977 + 1.16667 NA intron (NM_173808, intron 6 of 6) MLT1A0|LTR|ERVL-MaLR 269179 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 391.5 chr10 80444622 80445258 + 1.16667 NA Intergenic Intergenic -9325 NM_001351268 81619 Hs.308615 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14|tspan-14 tetraspanin 14 protein-coding 458.501 chr8 131858340 131859005 + 1.16667 NA Intergenic Intergenic -45421 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 231.501-3 chr6 13803567 13804103 + 1.16667 NA intron (NM_001031713, intron 2 of 8) intron (NM_001031713, intron 2 of 8) 10725 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 169.667-18 chr11 60802368 60802600 + 1.16667 NA Intergenic L1MC5a|LINE|L1 17151 NM_206893 341116 Hs.591956 NM_206893 ENSG00000172689 MS4A10 CD20L7|MS4A9 membrane spanning 4-domains A10 protein-coding 243.334-6 chr2 148861800 148862099 + 1.16667 NA Intergenic Intergenic -13278 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 276-15 chr2 169613158 169613526 + 1.16667 NA intron (NM_004792, intron 7 of 13) intron (NM_004792, intron 7 of 13) 28991 NM_004792 9360 Hs.470544 NM_004792 ENSG00000138398 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G protein-coding 204.833-20 chr5 4539872 4540239 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -233426 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 328.333-6 chr15 40678882 40679399 + 1.16667 NA Intergenic L1MA3|LINE|L1 15965 NR_040058 100505648 Hs.586876 NR_040058 ENSG00000245849 RAD51-AS1 TODRA RAD51 antisense RNA 1 ncRNA 244.167-9 chr12 79686663 79686903 + 1.16667 NA intron (NM_001354732, intron 2 of 6) intron (NM_001354732, intron 2 of 6) 3797 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 268.667 chr1 23950615 23951005 + 1.16667 NA Intergenic Intergenic -9018 NM_017761 55629 Hs.7862 NM_017761 ENSG00000189266 PNRC2 - proline rich nuclear receptor coactivator 2 protein-coding 326.501 chr14 33273973 33274269 + 1.16667 NA intron (NM_173159, intron 3 of 11) MER57B2|LTR|ERV1 335242 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 288.5-9 chr14 58199530 58199931 + 1.16667 NA promoter-TSS (NM_018477) promoter-TSS (NM_018477) -419 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 396.166 chr12 120475528 120476233 + 1.16667 NA intron (NM_001037494, intron 1 of 2) intron (NM_001037494, intron 1 of 2) 6038 NM_001037494 8655 Hs.5120 NM_003746 ENSG00000088986 DYNLL1 DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1 dynein light chain LC8-type 1 protein-coding 278.167-19 chr4 1167263 1167751 + 1.16667 NA exon (NM_001128325, exon 7 of 7) exon (NM_001128325, exon 7 of 7) 5076 NM_012445 10417 Hs.302963 NM_012445 ENSG00000159674 SPON2 DIL-1|DIL1|M-SPONDIN|MINDIN spondin 2 protein-coding 163.334-5 chr3 178247112 178247275 + 1.16667 NA Intergenic L1ME3F|LINE|L1 -172008 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 256.334-2 chr15 51132667 51133026 + 1.16667 NA intron (NR_146310, intron 1 of 2) intron (NR_146310, intron 1 of 2) -27570 NM_207381 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 206.333-32 chr6 154734605 154734957 + 1.16667 NA intron (NM_014892, intron 1 of 19) intron (NM_014892, intron 1 of 19) 1403 NM_001286188 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 415.667 chr1 112955087 112956146 + 1.16667 NA promoter-TSS (NR_103743) promoter-TSS (NR_103743) 447 NM_001166496 6566 Hs.75231 NM_003051 ENSG00000155380 SLC16A1 HHF7|MCT|MCT1|MCT1D solute carrier family 16 member 1 protein-coding 399.667-8 chr8 21128976 21129375 + 1.16667 NA Intergenic L2a|LINE|L2 155189 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 289.667-10 chr2 13572842 13573306 + 1.16667 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -566061 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 234.5-22 chr2 82456433 82456908 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR -400133 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 245.001-4 chr7 2922021 2922285 + 1.16667 NA intron (NM_001324281, intron 18 of 25) intron (NM_001324281, intron 18 of 25) -77845 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 299.501-4 chr6 157912246 157912530 + 1.16667 NA intron (NM_016224, intron 9 of 17) intron (NM_016224, intron 9 of 17) -69475 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 224.167-17 chr19 28584590 28584980 + 1.16667 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -21903 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 196.667-20 chr16 66478872 66479093 + 1.16667 NA intron (NM_001197225, intron 3 of 4) intron (NM_001197225, intron 3 of 4) -2580 NR_109960 101927726 Hs.739193 NR_109960 ENSG00000261656 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 203.167-4 chr12 6694692 6694926 + 1.16667 NA 3' UTR (NM_001244014, exon 5 of 5) 3' UTR (NM_001244014, exon 5 of 5) -5237 NM_001135734 171017 Hs.103315 NM_133476 ENSG00000126746 ZNF384 CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 zinc finger protein 384 protein-coding 212.334-4 chr12 24975373 24975702 + 1.16667 NA Intergenic LTR35|LTR|ERV1 21928 NM_001101339 196415 Hs.434453 NM_001101339 C12orf77 - chromosome 12 open reading frame 77 protein-coding 175.5-46 chr5 170696577 170696779 + 1.16667 NA intron (NM_001278340, intron 2 of 8) intron (NM_001278340, intron 2 of 8) -15208 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 166.667-30 chr2 124899149 124899474 + 1.16667 NA intron (NM_130773, intron 21 of 23) intron (NM_130773, intron 21 of 23) 874024 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 348.334-7 chr22 27612002 27612390 + 1.16667 NA Intergenic Intergenic 189560 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 166.167-15 chr16 75433207 75433552 + 1.16667 NA 5' UTR (NM_006324, exon 1 of 7) 5' UTR (NM_006324, exon 1 of 7) 124 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 330.667-14 chr7 43583773 43584148 + 1.16667 NA intron (NM_004760, intron 1 of 6) intron (NM_004760, intron 1 of 6) 852 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 273.834-2 chr11 123800943 123801212 + 1.16667 NA Intergenic Intergenic 5272 NM_001005325 390261 Hs.557924 NM_001005325 ENSG00000196099 OR6M1 OR11-271 olfactory receptor family 6 subfamily M member 1 protein-coding 186.834-8 chr7 136593931 136594228 + 1.16667 NA Intergenic Intergenic -274573 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 305.334-12 chr5 135332777 135333068 + 1.16667 NA intron (NR_161235, intron 3 of 5) intron (NR_161235, intron 3 of 5) 66316 NM_001040158 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 399.5-3 chr1 207403476 207403984 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -50570 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 228.167-13 chr15 57105688 57105985 + 1.16667 NA intron (NM_207038, intron 5 of 19) MIRc|SINE|MIR -113594 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 184.333-7 chr10 115130275 115130614 + 1.16667 NA intron (NM_001276282, intron 5 of 7) intron (NM_001276282, intron 5 of 7) 37079 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 305.501 chr11 59169417 59169743 + 1.16667 NA Intergenic HSMAR2|DNA|TcMar-Mariner -1850 NM_001300727 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 243.833-7 chr10 60359830 60360296 + 1.16667 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 29812 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 181.5-56 chr9 80796002 80796200 + 1.16667 NA Intergenic Intergenic 821078 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 248.001-2 chr20 57075401 57075814 + 1.16667 NA Intergenic Intergenic -138089 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 238.667-7 chr13 20230291 20230776 + 1.16667 NA intron (NM_001110221, intron 1 of 2) intron (NM_001110221, intron 1 of 2) 700 NM_006783 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 174.667-45 chr5 65537651 65537900 + 1.16667 NA intron (NM_001349369, intron 6 of 10) L1MB8|LINE|L1 25393 NM_001349369 64105 Hs.529778 NM_022145 ENSG00000123219 CENPK AF5alpha|CENP-K|FKSG14|P33|Solt centromere protein K protein-coding 301.834-3 chr11 128629521 128629938 + 1.16667 NA Intergenic Intergenic -42171 NM_001143820 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 316-12 chr3 101578691 101579172 + 1.16667 NA intron (NR_135229, intron 2 of 4) intron (NR_135229, intron 2 of 4) 4751 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 344-5 chr10 102151436 102152070 + 1.16667 NA promoter-TSS (NM_001284389) promoter-TSS (NM_001284389) -423 NM_001284388 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 414.834-5 chr7 92830981 92831509 + 1.16667 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 2714 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 214.167-5 chr12 4105360 4105588 + 1.16667 NA Intergenic Charlie2a|DNA|hAT-Charlie -168288 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 320.834-6 chr17 33860383 33860680 + 1.16667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 296275 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 277-27 chr6 137681111 137681507 + 1.16667 NA Intergenic Intergenic 15663 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 190-37 chr3 84808054 84808307 + 1.16667 NA intron (NR_033860, intron 8 of 20) intron (NR_033860, intron 8 of 20) 61395 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 193.5-11 chr14 57209641 57209968 + 1.16667 NA intron (NM_006544, intron 16 of 17) intron (NM_006544, intron 16 of 17) 59101 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 361.667-10 chr2 172938810 172939171 + 1.16667 NA intron (NM_001282901, intron 1 of 24) L1MC3|LINE|L1 10785 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 297.334-2 chr1 188957033 188957561 + 1.16667 NA Intergenic L1PA16|LINE|L1 1513669 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 309.5-2 chr11 110141966 110142444 + 1.16667 NA intron (NM_033390, intron 2 of 5) intron (NM_033390, intron 2 of 5) 48813 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 236-20 chr6 147456874 147457167 + 1.16667 NA Intergenic MER94|DNA|hAT-Blackjack -51670 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 193.167-27 chr6 63347281 63347632 + 1.16667 NA Intergenic Intergenic -27473 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 245.001 chr10 103859429 103859662 + 1.16667 NA Intergenic (CTC)n|Simple_repeat|Simple_repeat -4139 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 272.834-11 chr7 135510274 135510508 + 1.16667 NA promoter-TSS (NM_001190850) promoter-TSS (NM_001190850) -264 NM_001190850 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 222.834-6 chr3 39441896 39442106 + 1.16667 NA Intergenic Intergenic -25679 NR_103506 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 208.334-3 chr11 115349856 115350070 + 1.16667 NA intron (NM_001098517, intron 1 of 8) AluSp|SINE|Alu 16386 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 398.833-4 chr19 2611038 2611671 + 1.16667 NA intron (NM_052847, intron 2 of 4) CpG -19361 NR_107004 102465838 NR_107004 ENSG00000277904 MIR7850 hsa-mir-7850 microRNA 7850 ncRNA 258.834-9 chr9 133135404 133135657 + 1.16667 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) -4373 NM_001271774 5900 Hs.106185 NM_006266 ENSG00000160271 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 316.001-2 chr19 40778192 40778532 + 1.16667 NA TTS (NM_001202553) TTS (NM_001202553) 115 NM_016154 53916 Hs.631539 NM_016154 ENSG00000167578 RAB4B - RAB4B, member RAS oncogene family protein-coding 223.501-2 chrX 53284778 53285020 + 1.16667 NA intron (NM_001111125, intron 2 of 14) intron (NM_001111125, intron 2 of 14) -3315 NM_015075 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 353-16 chr9 34612122 34612589 + 1.16667 NA promoter-TSS (NM_148179) promoter-TSS (NM_148179) -258 NM_148178 138716 Hs.15961 NM_148178 ENSG00000164967 RPP25L C9orf23|bA296L22.5 ribonuclease P/MRP subunit p25 like protein-coding 197.667-5 chr10 16537392 16537759 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -15696 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 223.667-53 chrX 40468269 40468634 + 1.16667 NA Intergenic Intergenic -112519 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 302.5-18 chr8 137340294 137340738 + 1.16667 NA Intergenic Intergenic 73072 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 370.334-7 chr3 29551012 29551373 + 1.16667 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 269880 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 297.667-6 chr12 570628 571122 + 1.16667 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 15611 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 472-3 chr15 65322907 65323486 + 1.16667 NA Intergenic MLT1G1|LTR|ERVL-MaLR 18519 NR_002757 26832 NR_002757 ENSG00000200156 RNU5B-1 RNU5B|RNU5B-1P|U5B1 RNA, U5B small nuclear 1 snRNA 269.334-6 chr2 75895991 75896374 + 1.16667 NA Intergenic Intergenic -185267 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 172.667-12 chr11 81785998 81786213 + 1.16667 NA Intergenic Intergenic 104731 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 321.167-2 chr11 42192858 42193282 + 1.16667 NA intron (NR_038309, intron 4 of 5) MLT1A0|LTR|ERVL-MaLR 60620 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 415.334-6 chr2 24250114 24250625 + 1.16667 NA intron (NM_001348182, intron 24 of 38) Charlie1a|DNA|hAT-Charlie 75316 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 222.334-3 chr2 100070902 100071196 + 1.16667 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 34534 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 363.667-5 chr14 61103607 61103991 + 1.16667 NA Intergenic Intergenic -122109 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 247.5-7 chr13 47827724 47828208 + 1.16667 NA Intergenic MIR|SINE|MIR 104656 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 219.5-7 chr11 38816618 38816909 + 1.16667 NA Intergenic Intergenic 167905 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 235.167-3 chr1 108849065 108849335 + 1.16667 NA intron (NM_152763, intron 3 of 15) AluJr|SINE|Alu 7894 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 387.668 chr1 29181493 29181888 + 1.16667 NA exon (NM_005626, exon 1 of 6) exon (NM_005626, exon 1 of 6) 210 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 203.833-10 chr17 60526839 60527230 + 1.16667 NA promoter-TSS (NM_001282476) promoter-TSS (NM_001282476) -792 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 265.501-2 chr8 115075020 115075298 + 1.16667 NA Intergenic Intergenic 592854 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 215.834-6 chr17 60949789 60950109 + 1.16667 NA intron (NM_001330413, intron 14 of 25) L1MC5a|LINE|L1 272098 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 211.167-11 chr2 102431402 102431756 + 1.16667 NA promoter-TSS (NR_039930) promoter-TSS (NR_039930) -710 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 193-2 chr1 161999045 161999272 + 1.16667 NA intron (NM_001347700, intron 5 of 7) L2a|LINE|L2 25307 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 197.667-8 chr10 101746650 101746983 + 1.16667 NA Intergenic Intergenic 29298 NM_033164 2253 Hs.57710 NM_006119 ENSG00000107831 FGF8 AIGF|FGF-8|HBGF-8|HH6|KAL6 fibroblast growth factor 8 protein-coding 192.001 chr2 108794187 108794552 + 1.16667 NA intron (NM_144978, intron 4 of 14) L1MC4|LINE|L1 7598 NR_147236 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 206.667-62 chrX 51089205 51089599 + 1.16667 NA Intergenic Intergenic 82019 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 229.167-23 chr9 16720270 16720618 + 1.16667 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -6370 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 199.167-8 chr18 68214662 68214985 + 1.16667 NA Intergenic Intergenic -400001 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 267.667-13 chr2 169824738 169824971 + 1.16667 NA promoter-TSS (NM_014168) promoter-TSS (NM_014168) 51 NM_014168 29081 Hs.470553 NM_014168 ENSG00000138382 METTL5 HSPC133 methyltransferase like 5 protein-coding 184.834 chr1 94241638 94241798 + 1.16667 NA intron (NM_001328664, intron 1 of 22) (TA)n|Simple_repeat|Simple_repeat -4134 NM_001328666 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 229.334-13 chr9 95946564 95946894 + 1.16667 NA intron (NM_020207, intron 12 of 18) Tigger1|DNA|TcMar-Tigger 70721 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 254.001 chr2 21776849 21777314 + 1.16667 NA Intergenic Intergenic -66429 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 219-4 chr11 19116556 19116867 + 1.16667 NA promoter-TSS (NM_001001483) promoter-TSS (NM_001001483) -434 NM_001001483 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 256.001-2 chr3 194672247 194672509 + 1.16667 NA promoter-TSS (NM_018385) promoter-TSS (NM_018385) -187 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 170.667-32 chr3 110219575 110219813 + 1.16667 NA Intergenic Intergenic 616866 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 248-38 chr8 85365598 85366034 + 1.16667 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) 12297 NM_001128830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 201.667-24 chr2 165469173 165469350 + 1.16667 NA promoter-TSS (NM_001172173) promoter-TSS (NM_001172173) -437 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 362.5-15 chr9 23119149 23119529 + 1.16667 NA Intergenic Intergenic 473139 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 269.001 chr18 79379211 79379520 + 1.16667 NA Intergenic Intergenic -16565 NM_001278669 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 253.5-27 chr5 73354586 73354999 + 1.16667 NA Intergenic L1MC1|LINE|L1 16886 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 178.334-7 chr6 16916417 16916628 + 1.16667 NA Intergenic L1MEg|LINE|L1 -155032 NM_001128164 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 224.333-26 chr22 39493275 39493708 + 1.16667 NA Intergenic Intergenic 6267 NM_001098270 4248 Hs.276808 NM_002409 ENSG00000128268 MGAT3 GNT-III|GNT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding 233.5-5 chr10 63696357 63696787 + 1.16667 NA Intergenic Intergenic -174682 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 183.334-9 chr7 15326246 15326427 + 1.16667 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 235679 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 229.167-24 chrX 67583763 67584081 + 1.16667 NA intron (NM_001011645, intron 2 of 8) intron (NM_001011645, intron 2 of 8) 39299 NM_001348064 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 282.667-13 chr16 87073322 87073691 + 1.16667 NA Intergenic Intergenic 15722 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 197.167-25 chr20 40733421 40733778 + 1.16667 NA Intergenic L1M6|LINE|L1 -18976 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 230.001 chr3 85211526 85211800 + 1.16667 NA intron (NM_001167674, intron 1 of 9) L1M1|LINE|L1 -149399 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 194.833-8 chr14 55589975 55590281 + 1.16667 NA intron (NM_004986, intron 1 of 41) intron (NM_004986, intron 1 of 41) 9921 NR_073128 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 241.333-28 chr5 118995605 118995928 + 1.16667 NA TTS (NR_134249) TTS (NR_134249) -7219 NM_173666 285605 Hs.655891 NM_173666 ENSG00000169570 DTWD2 - DTW domain containing 2 protein-coding 195-29 chr22 38073405 38073586 + 1.16667 NA intron (NM_001039584, intron 10 of 12) MER103C|DNA|hAT-Charlie 9668 NM_013356 23539 Hs.745256 NM_013356 ENSG00000100156 SLC16A8 MCT3|REMP solute carrier family 16 member 8 protein-coding 360.667-11 chr7 50551874 50552252 + 1.16667 NA intron (NM_001082971, intron 1 of 14) intron (NM_001082971, intron 1 of 14) 9008 NM_001242887 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 280-22 chr8 139008788 139009144 + 1.16667 NA Intergenic L1MB3|LINE|L1 -94925 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 265.167-14 chr8 81024461 81024826 + 1.16667 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 87425 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 163.667-41 chr4 41093903 41094194 + 1.16667 NA intron (NM_173075, intron 3 of 16) L1MA8|LINE|L1 120494 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 329.5-13 chr20 37384905 37385371 + 1.16667 NA intron (NM_198291, intron 4 of 13) intron (NM_198291, intron 4 of 13) 39010 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 185-41 chr7 71220969 71221376 + 1.16667 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) -86502 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 201.167-18 chr2 71531771 71531970 + 1.16667 NA intron (NM_001130985, intron 14 of 54) Tigger17a|DNA|TcMar-Tigger 65171 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 223.834-8 chr2 81130156 81130516 + 1.16667 NA Intergenic L1M5|LINE|L1 336610 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 207.167-11 chr20 3088523 3088826 + 1.16667 NA Intergenic HAL1|LINE|L1 -3950 NM_000490 551 Hs.89648 NM_000490 ENSG00000101200 AVP ADH|ARVP|AVP-NPII|AVRP|VP arginine vasopressin protein-coding 242.834-8 chr6 18749204 18749542 + 1.16667 NA Intergenic Intergenic 177589 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 167.333-27 chr18 24560616 24560858 + 1.16667 NA Intergenic Intergenic -67445 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LINC01915 - long intergenic non-protein coding RNA 1915 ncRNA 281.5-24 chr8 86421407 86421701 + 1.16667 NA intron (NM_007013, intron 9 of 24) AluY|SINE|Alu 79007 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 314.667-9 chr22 38473347 38473811 + 1.16667 NA intron (NM_016657, intron 1 of 3) intron (NM_016657, intron 1 of 3) 5483 NM_006855 11015 Hs.745072 NM_006855 ENSG00000100196 KDELR3 ERD2L3 KDEL endoplasmic reticulum protein retention receptor 3 protein-coding 437.833-2 chr4 4430514 4431141 + 1.16667 NA intron (NM_016930, intron 7 of 10) MIRb|SINE|MIR 31145 NM_001346300 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 206.834-11 chr6 34756454 34756698 + 1.16667 NA promoter-TSS (NM_003093) promoter-TSS (NM_003093) -518 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 173.834-2 chr10 51233112 51233746 + 1.16667 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -66144 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 289.834-2 chr12 95562201 95562563 + 1.16667 NA Intergenic AluSp|SINE|Alu -10906 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 178.833-22 chr20 10331129 10331518 + 1.16667 NA Intergenic Intergenic 100602 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 355.5 chr1 60156453 60157028 + 1.16667 NA Intergenic Intergenic -82970 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 244.5-11 chr15 61833736 61834177 + 1.16667 NA Intergenic AluJb|SINE|Alu 104038 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 321.501 chr1 42687357 42687770 + 1.16667 NA intron (NM_004559, intron 2 of 7) AluSq2|SINE|Alu 4427 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 168.834 chr10 46521117 46521273 + 1.16667 NA Intergenic MIRb|SINE|MIR 34876 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 259.167-9 chr3 131281375 131281678 + 1.16667 NA intron (NM_001353043, intron 17 of 17) L1MC5|LINE|L1 -80319 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 229.5-14 chr18 38283979 38284319 + 1.16667 NA Intergenic Intergenic 627014 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 241.167-21 chr3 39497497 39497817 + 1.16667 NA intron (NR_103506, intron 2 of 2) MIRb|SINE|MIR -4409 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 214.667-13 chr2 8513769 8514208 + 1.16667 NA Intergenic Intergenic 69804 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 220.5-37 chr5 145621857 145622308 + 1.16667 NA Intergenic L1MB8|LINE|L1 213260 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 185.334 chr12 120628731 120629001 + 1.16667 NA Intergenic LTR33|LTR|ERVL -11753 NM_001033677 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 235.001-2 chr14 54510922 54511205 + 1.16667 NA intron (NM_006568, intron 1 of 5) L2c|LINE|L2 1157 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 200.834-8 chr8 54516111 54516358 + 1.16667 NA Intergenic L1MD2|LINE|L1 58299 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 239.167 chr1 34803803 34804065 + 1.16667 NA Intergenic HAL1|LINE|L1 10935 NM_002060 2701 Hs.296310 NM_002060 ENSG00000187513 GJA4 CX37 gap junction protein alpha 4 protein-coding 345.167-6 chr17 52637924 52638303 + 1.16667 NA Intergenic Intergenic -224008 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 226.334-9 chr9 24011449 24011688 + 1.16667 NA Intergenic Intergenic -160967 NM_001351462 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 280.667-18 chr9 129200954 129201232 + 1.16667 NA Intergenic Intergenic -22832 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5 like protein-coding 347.834-2 chr16 55437807 55438356 + 1.16667 NA intron (NR_147198, intron 4 of 6) intron (NR_147198, intron 4 of 6) 24216 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 187-48 chr8 132549371 132549668 + 1.16667 NA Intergenic GA-rich|Low_complexity|Low_complexity 11960 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 263.5-21 chr4 37828302 37828664 + 1.16667 NA intron (NM_018290, intron 1 of 13) intron (NM_018290, intron 1 of 13) 1797 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 197.167-13 chr15 58965848 58966117 + 1.16667 NA Intergenic MIR3|SINE|MIR -21681 NM_001270529 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 224.334 chr1 66240106 66240305 + 1.16667 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -91903 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 271.334-17 chr8 84669504 84669932 + 1.16667 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -36209 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 287.667-7 chr12 95575068 95575458 + 1.16667 NA Intergenic Intergenic -23787 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 226.334-3 chr12 9938026 9938263 + 1.16667 NA intron (NR_104634, intron 4 of 4) intron (NR_104634, intron 4 of 4) 5351 NR_104634 100506159 Hs.282397 NR_104634 ENSG00000225231 LINC02470 - long intergenic non-protein coding RNA 2470 ncRNA 167.834-9 chr8 118061712 118061956 + 1.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 49985 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 226.501-3 chr5 133116821 133117062 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR 64928 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 175.333 chr1 22523566 22523855 + 1.16667 NA intron (NM_001083621, intron 17 of 18) Kanga1b|DNA|TcMar-Tc2 -39779 NM_020526 2046 Hs.283613 NM_020526 ENSG00000070886 EPHA8 EEK|EK3|HEK3 EPH receptor A8 protein-coding 294.667-14 chr2 44193218 44193789 + 1.16667 NA intron (NM_177969, intron 1 of 4) AluJr|SINE|Alu 24628 NM_177968 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 189.667-22 chr17 42773146 42773365 + 1.16667 NA promoter-TSS (NM_032353) promoter-TSS (NM_032353) -194 NM_032353 84313 Hs.500165 NM_032353 ENSG00000131475 VPS25 DERP9|EAP20|FAP20 vacuolar protein sorting 25 homolog protein-coding 193-12 chr14 80804884 80805075 + 1.16667 NA intron (NM_152446, intron 13 of 24) intron (NM_152446, intron 13 of 24) 136759 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 390.834-4 chr19 29845130 29845780 + 1.16667 NA Intergenic Intergenic 33464 NM_001238 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 183.167-45 chr9 105200035 105200212 + 1.16667 NA Intergenic AluSq2|SINE|Alu -44482 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 257.334-6 chr22 36688842 36689253 + 1.16667 NA intron (NM_006078, intron 1 of 3) L2c|LINE|L2 13811 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 360.834-9 chr4 23324973 23325395 + 1.16667 NA Intergenic MER92B|LTR|ERV1 556108 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 321.834-4 chr20 45330026 45330346 + 1.16667 NA intron (NM_002999, intron 4 of 4) intron (NM_002999, intron 4 of 4) 18238 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 352.001-3 chr4 172767200 172767598 + 1.16667 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) -40521 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 267.834-7 chr7 49395289 49395535 + 1.16667 NA Intergenic L2b|LINE|L2 -378226 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 202-17 chr2 31172361 31172591 + 1.16667 NA TTS (NM_001321270) TTS (NM_001321270) -34036 NM_001329096 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 295.667-18 chr8 27585186 27585611 + 1.16667 NA Intergenic Intergenic 25353 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 240.834-3 chr14 47679375 47679819 + 1.16667 NA Intergenic Intergenic -4643 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 192-31 chr5 87014848 87015194 + 1.16667 NA Intergenic AluJo|SINE|Alu 99933 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 264.501-5 chr8 118896963 118897243 + 1.16667 NA Intergenic L2b|LINE|L2 54782 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 233.001-2 chr14 90655174 90655521 + 1.16667 NA intron (NM_001320421, intron 11 of 20) intron (NM_001320421, intron 11 of 20) 12718 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 384.668 chr14 49376783 49377134 + 1.16667 NA Intergenic Intergenic 209422 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 410.334-2 chr12 70589814 70590512 + 1.16667 NA exon (NM_001330204, exon 8 of 33) exon (NM_001330204, exon 8 of 33) 19861 NM_002837 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 288-18 chr20 12837882 12838294 + 1.16667 NA Intergenic Intergenic 98875 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 203.833-27 chrX 97931710 97931976 + 1.16667 NA Intergenic L3|LINE|CR1 -367308 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 256.167-4 chr1 82269470 82269732 + 1.16667 NA Intergenic Intergenic 467148 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 259.334-3 chr20 51017284 51017630 + 1.16667 NA intron (NM_002237, intron 1 of 2) L1ME5|LINE|L1 5650 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 326.001 chr20 40251541 40251972 + 1.16667 NA Intergenic L1ME4a|LINE|L1 247295 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 229.667-12 chr14 78747227 78747505 + 1.16667 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 343647 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 206.667-55 chr8 51023664 51023850 + 1.16667 NA Intergenic L3b|LINE|CR1 785688 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 244.5-16 chr19 12639960 12640382 + 1.16667 NA Intergenic CpG 26571 NM_000528 4125 Hs.356769 NM_000528 ENSG00000104774 MAN2B1 LAMAN|MANB mannosidase alpha class 2B member 1 protein-coding 230-26 chr2 211085636 211085951 + 1.16667 NA Intergenic Intergenic 468222 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 307.167-14 chr19 38233735 38234055 + 1.16667 NA Intergenic Intergenic -4181 NM_001135156 8193 Hs.631576 NM_004647 ENSG00000011332 DPF1 BAF45b|NEUD4|neuro-d4 double PHD fingers 1 protein-coding 256-11 chr16 54175863 54176232 + 1.16667 NA Intergenic Intergenic 94832 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 325.167-15 chr8 118491995 118492567 + 1.16667 NA intron (NM_001101676, intron 2 of 4) L1ME2|LINE|L1 -128720 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 272.333-8 chr15 65179814 65180234 + 1.16667 NA intron (NM_006660, intron 2 of 13) intron (NM_006660, intron 2 of 13) 5318 NR_133680 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 359-14 chr8 143285343 143286389 + 1.16667 NA Intergenic HAL1b|LINE|L1 -4166 NR_120682 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long non-coding RNA ncRNA 269.5-24 chr7 90413061 90413431 + 1.16667 NA exon (NM_001185072, exon 4 of 4) exon (NM_001185072, exon 4 of 4) 9785 NM_001185073 9069 Hs.731917 NM_012129 ENSG00000157224 CLDN12 - claudin 12 protein-coding 411.167-3 chr22 41880159 41880615 + 1.16667 NA intron (NR_103834, intron 10 of 21) AluSz|SINE|Alu -20557 NR_029507 407039 NR_029507 ENSG00000207932 MIR33A MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a microRNA 33a ncRNA 315.834-6 chr5 7652194 7653137 + 1.16667 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 198468 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 303.834-6 chr5 38939394 38939895 + 1.16667 NA 3' UTR (NM_152756, exon 38 of 38) 3' UTR (NM_152756, exon 38 of 38) 93632 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 285.167-18 chr8 136371385 136371701 + 1.16667 NA Intergenic LTR85b|LTR|Gypsy? -159255 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 179.833-9 chr12 84842582 84842946 + 1.16667 NA Intergenic Intergenic 70035 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 310.167-8 chr3 46860061 46860686 + 1.16667 NA intron (NM_000258, intron 3 of 6) intron (NM_000258, intron 3 of 6) 3110 NM_000258 4634 Hs.517939 NM_000258 ENSG00000160808 MYL3 CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl myosin light chain 3 protein-coding 190.334-4 chr2 71509480 71509721 + 1.16667 NA intron (NM_001130985, intron 4 of 54) L1MC4|LINE|L1 42901 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 183.667-31 chr2 143445591 143445799 + 1.16667 NA intron (NM_018460, intron 8 of 13) intron (NM_018460, intron 8 of 13) 316276 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 417.333-11 chr8 114887159 114887750 + 1.16667 NA Intergenic MIR|SINE|MIR 780559 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 259-8 chr10 51546543 51546944 + 1.16667 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 152852 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 239.334-9 chr4 78645491 78645765 + 1.16667 NA promoter-TSS (NR_038304) promoter-TSS (NR_038304) -366 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 319.167-7 chr15 84980810 84981207 + 1.16667 NA promoter-TSS (NM_002605) promoter-TSS (NM_002605) 541 NM_001243137 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 206.667-11 chr12 65474378 65474597 + 1.16667 NA intron (NR_120431, intron 3 of 3) intron (NR_120431, intron 3 of 3) 82824 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 179.334-5 chr2 214801149 214801401 + 1.16667 NA intron (NM_001282545, intron 1 of 6) L1ME4b|LINE|L1 8408 NM_000465 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 194.667-39 chr3 94815802 94816029 + 1.16667 NA Intergenic Intergenic -122348 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 193.667-31 chr20 39251856 39252031 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie -27195 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 195.167-7 chr11 7365715 7366102 + 1.16667 NA intron (NM_175733, intron 3 of 6) intron (NM_175733, intron 3 of 6) 99927 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 175.667-49 chr7 16504027 16504274 + 1.16667 NA Intergenic Intergenic -22675 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 267.834-6 chr6 163073713 163074060 + 1.16667 NA intron (NM_001080379, intron 3 of 4) L1MA3|LINE|L1 -19725 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 391.834-6 chr5 118732182 118732588 + 1.16667 NA Intergenic Intergenic 136197 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 280.667-11 chr3 68192154 68192597 + 1.16667 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 188128 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 188.167-13 chr17 9839613 9839793 + 1.16667 NA intron (NM_004246, intron 3 of 12) intron (NM_004246, intron 3 of 12) 13779 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 218-9 chr11 130858432 130858975 + 1.16667 NA intron (NR_125383, intron 2 of 5) intron (NR_125383, intron 2 of 5) 3407 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 285.167-15 chr5 39643171 39643451 + 1.16667 NA Intergenic AluSq2|SINE|Alu 122880 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 196.5-50 chr9 132636688 132636948 + 1.16667 NA intron (NR_136309, intron 14 of 18) intron (NR_136309, intron 14 of 18) 26508 NM_001322343 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding 316.334 chr1 78042770 78043203 + 1.16667 NA Intergenic Intergenic -1984 NM_001304725 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 271.501-5 chr9 34599950 34600237 + 1.16667 NA Intergenic Intergenic -9953 NM_001207011 1271 Hs.129966 NM_001842 ENSG00000122756 CNTFR - ciliary neurotrophic factor receptor protein-coding 202.167-33 chr6 92789820 92790059 + 1.16667 NA Intergenic L1MEd|LINE|L1 629620 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 357.334-3 chr5 81992759 81993132 + 1.16667 NA intron (NM_031482, intron 2 of 7) intron (NM_031482, intron 2 of 7) 20922 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 256.5-17 chr20 1617544 1617971 + 1.16667 NA intron (NM_001329157, intron 1 of 5) L1MA8|LINE|L1 2252 NM_001329157 10326 Hs.664861 NM_006065 ENSG00000101307 SIRPB1 CD172b|SIRP-BETA-1 signal regulatory protein beta 1 protein-coding 181.834-2 chr1 157954251 157954417 + 1.16667 NA Intergenic Intergenic 28367 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 215.5-30 chr9 26381070 26381273 + 1.16667 NA Intergenic Charlie19a|DNA|hAT-Charlie 314496 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 271.001-2 chr11 68459903 68460184 + 1.16667 NA promoter-TSS (NM_001352360) promoter-TSS (NM_001352360) -709 NR_147970 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 338.5 chr15 68735759 68736162 + 1.16667 NA Intergenic MIRc|SINE|MIR 65965 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 206.167-5 chr11 134110881 134111115 + 1.16667 NA intron (NM_001205329, intron 1 of 7) intron (NM_001205329, intron 1 of 7) 40365 NR_145790 109623486 NR_145790 SNORD153 - small nucleolar RNA, C/D box 153 snoRNA 220.5-22 chr2 67290565 67290882 + 1.16667 NA Intergenic Intergenic -75404 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 290.834-10 chr5 52109934 52110313 + 1.16667 NA Intergenic MER39|LTR|ERV1 102092 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 167.834-8 chr20 35539294 35539498 + 1.16667 NA Intergenic L1MCa|LINE|L1 -2682 NM_198398 51614 Hs.472558 NM_015966 ENSG00000125991 ERGIC3 C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2 ERGIC and golgi 3 protein-coding 298.167-12 chr5 75359990 75360333 + 1.16667 NA intron (NM_001364187, intron 19 of 19) intron (NM_001364187, intron 19 of 19) 22941 NM_000859 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 343.5-13 chr5 54147261 54147757 + 1.16667 NA intron (NM_019087, intron 3 of 4) intron (NM_019087, intron 3 of 4) 163064 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 211.5-26 chr19 58346612 58346880 + 1.16667 NA 3' UTR (NM_130786, exon 8 of 8) 3' UTR (NM_130786, exon 8 of 8) -5224 NR_015380 503538 Hs.709582 NR_015380 ENSG00000268895 A1BG-AS1 A1BG-AS|A1BGAS|NCRNA00181 A1BG antisense RNA 1 ncRNA 191.167-28 chr8 102101133 102101434 + 1.16667 NA intron (NM_001040624, intron 1 of 7) MER102b|DNA|hAT-Charlie 23051 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 221-39 chr9 89950702 89951022 + 1.16667 NA Intergenic Intergenic -18554 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 235.334-6 chr3 197749367 197749768 + 1.16667 NA promoter-TSS (NM_032288) promoter-TSS (NM_032288) 14 NM_001011537 84248 Hs.277533 NM_032288 ENSG00000122068 FYTTD1 UIF forty-two-three domain containing 1 protein-coding 300.167-3 chr11 69131287 69131797 + 1.16667 NA Intergenic MIRb|SINE|MIR -24393 NR_161183 107984345 NM_001369201 SMIM38 - small integral membrane protein 38 protein-coding 245.833-4 chr10 91557308 91557706 + 1.16667 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 53953 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 225.667-31 chr5 38456496 38456813 + 1.16667 NA intron (NM_182801, intron 3 of 5) intron (NM_182801, intron 3 of 5) 11108 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 166.833-22 chr3 108626574 108626802 + 1.16667 NA intron (NM_014648, intron 7 of 32) L2a|LINE|L2 36966 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 186.334-4 chr12 18803810 18804015 + 1.16667 NA Intergenic Intergenic 65793 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 417.501-3 chr4 56945840 56946224 + 1.16667 NA Intergenic AluSz|SINE|Alu 31574 NM_032313 84273 Hs.8715 NM_032313 ENSG00000084092 NOA1 C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1 nitric oxide associated 1 protein-coding 237.167-10 chr19 29657068 29657548 + 1.16667 NA Intergenic (ATC)n|Simple_repeat|Simple_repeat -8153 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 257.834-3 chr15 81476930 81477166 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -102835 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 213.667-9 chr15 81285508 81285765 + 1.16667 NA intron (NM_001352686, intron 9 of 18) intron (NM_001352686, intron 9 of 18) -11334 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 194.667-17 chr12 86826571 86826862 + 1.16667 NA intron (NM_001351286, intron 1 of 7) intron (NM_001351286, intron 1 of 7) 12284 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 329.667-13 chr9 3466119 3466617 + 1.16667 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) 23119 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 199.167-15 chr20 2207978 2208161 + 1.16667 NA intron (NR_161305, intron 1 of 1) MIR|SINE|MIR 1141 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 164.667-22 chr17 74437820 74438033 + 1.16667 NA intron (NM_018653, intron 1 of 3) intron (NM_018653, intron 1 of 3) 4229 NM_018653 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 248.167-5 chr12 28834352 28834670 + 1.16667 NA Intergenic L1PA15|LINE|L1 -314767 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 384.334-5 chr5 62402529 62402942 + 1.16667 NA intron (NM_001348077, intron 2 of 11) intron (NM_001348077, intron 2 of 11) 1170 NM_001348076 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIMT1 rRNA methyltransferase and ribosome maturation factor protein-coding 388.001-2 chr9 21305478 21305960 + 1.16667 NA promoter-TSS (NM_002169) promoter-TSS (NM_002169) -406 NM_002169 3442 Hs.37113 NM_002169 ENSG00000147873 IFNA5 IFN-alpha-5|IFN-alphaG|INA5|INFA5|leIF G interferon alpha 5 protein-coding 349.5-12 chr6 55015477 55015968 + 1.16667 NA Intergenic Intergenic -90738 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 337.167-12 chr9 112598584 112598972 + 1.16667 NA intron (NM_133465, intron 2 of 3) intron (NM_133465, intron 2 of 3) -111134 NM_001350649 100133204 Hs.662552 NM_001350649 C9orf147 - chromosome 9 open reading frame 147 protein-coding 200.667-15 chr14 73100782 73101086 + 1.16667 NA intron (NM_021239, intron 9 of 18) intron (NM_021239, intron 9 of 18) -35573 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 319.334-9 chr3 133573216 133573617 + 1.16667 NA promoter-TSS (NM_017548) promoter-TSS (NM_017548) -270 NM_001134422 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 260.501-2 chr8 80348145 80348432 + 1.16667 NA Intergenic Intergenic 106899 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 202.334-2 chr11 19695235 19695481 + 1.16667 NA intron (NM_001111018, intron 1 of 37) MIRb|SINE|MIR -17479 NM_182964 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 260.334-11 chr8 58614789 58615048 + 1.16667 NA intron (NM_001144772, intron 9 of 30) L1MEf|LINE|L1 44489 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 174-10 chr11 82039738 82040071 + 1.16667 NA intron (NR_120571, intron 5 of 7) BLACKJACK|DNA|hAT-Blackjack -149068 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 306.834-7 chr22 49210879 49211239 + 1.16667 NA Intergenic Intergenic 332407 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 175.334 chr1 235083786 235084123 + 1.16667 NA Intergenic Intergenic -14136 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 246.667-11 chr19 10412044 10412462 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -4520 NM_001243121 5141 Hs.89901 NM_006202 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A protein-coding 192.333-55 chrX 42618935 42619285 + 1.16667 NA Intergenic Intergenic 159053 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 222.167-18 chr18 40459021 40459503 + 1.16667 NA Intergenic Intergenic 392976 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 172.667-40 chr3 197597505 197597868 + 1.16667 NA Intergenic Intergenic -24363 NM_203315 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 212.667-8 chr14 22985149 22985506 + 1.16667 NA TTS (NM_021944) TTS (NM_021944) -2776 NM_001289097 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding 245.167-11 chr3 173253499 173253809 + 1.16667 NA Intergenic MSTA-int|LTR|ERVL-MaLR -112419 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 238.167-6 chr11 109933279 109933569 + 1.16667 NA Intergenic MIRb|SINE|MIR -159968 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 224-19 chr16 73919070 73919323 + 1.16667 NA Intergenic L1ME3Cz|LINE|L1 296325 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 246.334-8 chr9 87501086 87501351 + 1.16667 NA intron (NM_004938, intron 2 of 25) intron (NM_004938, intron 2 of 25) 2683 NM_001288729 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 232.501 chr14 44941922 44942182 + 1.16667 NA intron (NM_017658, intron 2 of 4) L2c|LINE|L2 19433 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 231.167-20 chr22 37044201 37044607 + 1.16667 NA Intergenic Zaphod2|DNA|hAT-Tip100 -7332 NM_001282684 79734 Hs.517597 NM_024681 ENSG00000100379 KCTD17 - potassium channel tetramerization domain containing 17 protein-coding 265-3 chr14 64271943 64272370 + 1.16667 NA intron (NR_073497, intron 1 of 6) L1MA3|LINE|L1 10919 NM_001271877 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 232.167-3 chr12 15783308 15784013 + 1.16667 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 5728 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 211.667-42 chr7 72198024 72198365 + 1.16667 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 139197 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 242.167-21 chr3 76010316 76010563 + 1.16667 NA Intergenic Intergenic -224890 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 232.667-37 chr7 80674283 80674724 + 1.16667 NA TTS (NM_001001547) TTS (NM_001001547) 27850 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 172-50 chr8 19515973 19516232 + 1.16667 NA intron (NM_001354497, intron 1 of 7) intron (NM_001354497, intron 1 of 7) 86443 NM_001130518 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 235.167-5 chr1 202757957 202758278 + 1.16667 NA intron (NM_001314042, intron 10 of 27) intron (NM_001314042, intron 10 of 27) -47663 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 236.334-6 chr17 27827537 27827766 + 1.16667 NA Intergenic MIR3|SINE|MIR -27122 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 422.167 chr15 99059044 99059826 + 1.16667 NA Intergenic CpG 44731 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 179.333-14 chr15 67364296 67364497 + 1.16667 NA intron (NM_001031715, intron 8 of 20) intron (NM_001031715, intron 8 of 20) -109198 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 237.167-4 chr10 64844770 64844986 + 1.16667 NA Intergenic Intergenic 19350 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 240.834-2 chr10 71411814 71412097 + 1.16667 NA intron (NM_052836, intron 1 of 12) L1MB4|LINE|L1 15021 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 246.5-22 chr21 18600183 18600550 + 1.16667 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 85798 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 259.334-2 chr2 34343600 34343841 + 1.16667 NA Intergenic Intergenic 276494 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 375.834-3 chr14 61965824 61966352 + 1.16667 NA intron (NM_001367663, intron 1 of 7) L1M6|LINE|L1 38393 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 290.667-20 chr7 96486247 96486581 + 1.16667 NA exon (NM_001201450, exon 3 of 5) exon (NM_001201450, exon 3 of 5) 17109 NR_163949 225.833-24 chr8 4886371 4886747 + 1.16667 NA intron (NM_033225, intron 1 of 69) L1MB7|LINE|L1 108355 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 324.5-9 chr5 114444559 114444860 + 1.16667 NA intron (NM_170775, intron 1 of 5) intron (NM_170775, intron 1 of 5) 11198 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 236.5-28 chr4 26387858 26388076 + 1.16667 NA intron (NM_203284, intron 3 of 11) L1ME1|LINE|L1 66739 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 278.834-3 chr14 33138413 33138809 + 1.16667 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 199732 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 211.333-7 chr10 89902251 89902605 + 1.16667 NA intron (NR_149079, intron 1 of 1) (TA)n|Simple_repeat|Simple_repeat 14294 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 218.167-19 chr4 35913834 35914200 + 1.16667 NA Intergenic Intergenic 329922 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 168.167-5 chr11 37663165 37663369 + 1.16667 NA Intergenic Intergenic -275334 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 203.5-36 chr5 80091147 80091357 + 1.16667 NA Intergenic AluY|SINE|Alu -7587 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 253.333-10 chr14 67167435 67167916 + 1.16667 NA intron (NM_001024218, intron 19 of 21) intron (NM_001024218, intron 19 of 21) -21765 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 210.167-37 chrX 53071107 53071305 + 1.16667 NA intron (NM_018969, intron 1 of 1) AluSp|SINE|Alu -11161 NM_022117 64061 Hs.136164 NM_022117 ENSG00000184205 TSPYL2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX TSPY like 2 protein-coding 230.001-2 chr6 129730657 129730925 + 1.16667 NA Intergenic Intergenic -20614 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 310.667-5 chr17 47190893 47191246 + 1.16667 NA Intergenic MLT1H|LTR|ERVL-MaLR -1774 NM_001353050 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 171.667-19 chr15 64195916 64196297 + 1.16667 NA intron (NM_001329605, intron 10 of 12) AluJb|SINE|Alu -32951 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 302.333-13 chr7 7184141 7184750 + 1.16667 NA intron (NM_020156, intron 1 of 3) intron (NM_020156, intron 1 of 3) 1830 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 291.5-13 chr14 65629861 65630350 + 1.16667 NA intron (NM_004480, intron 5 of 9) L2c|LINE|L2 159003 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 273.001-5 chr3 189266537 189266814 + 1.16667 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -26081 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 170.334-9 chr8 65230688 65230908 + 1.16667 NA Intergenic Intergenic -50458 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 164.167-38 chr5 4021703 4021931 + 1.16667 NA Intergenic L1ME3C|LINE|L1 425985 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 341.167-13 chr5 117601318 117601711 + 1.16667 NA Intergenic Intergenic -128847 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 193.834-3 chr4 170854729 170854921 + 1.16667 NA Intergenic Intergenic -111090 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 197.834-9 chr2 62713697 62713950 + 1.16667 NA intron (NM_001142615, intron 2 of 22) intron (NM_001142615, intron 2 of 22) 6926 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 321.834-2 chr17 6987677 6988154 + 1.16667 NA intron (NR_040089, intron 2 of 2) intron (NR_040089, intron 2 of 2) -8134 NM_000697 239 Hs.654431 NM_000697 ENSG00000108839 ALOX12 12-LOX|12S-LOX|LOG12 arachidonate 12-lipoxygenase, 12S type protein-coding 279.334-10 chr9 127637338 127637755 + 1.16667 NA intron (NM_001032221, intron 1 of 18) intron (NM_001032221, intron 1 of 18) 25269 NM_001032221 6812 Hs.288229 NM_003165 ENSG00000136854 STXBP1 MUNC18-1|NSEC1|P67|RBSEC1|UNC18 syntaxin binding protein 1 protein-coding 227.667-19 chr18 9913604 9913957 + 1.16667 NA promoter-TSS (NM_003574) promoter-TSS (NM_003574) -236 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 174.5-20 chr2 204878320 204878536 + 1.16667 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 332953 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 376.167 chr1 97900490 97900937 + 1.16667 NA intron (NM_000110, intron 1 of 22) intron (NM_000110, intron 1 of 22) 20346 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 310.667-13 chr3 45043481 45043931 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR 13563 NM_001308394 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 227.167-24 chr7 42743482 42743921 + 1.16667 NA Intergenic Intergenic -37254 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 188.667-30 chr3 1436888 1437204 + 1.16667 NA Intergenic Intergenic 344022 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 181.333-11 chr17 8894922 8895193 + 1.16667 NA intron (NM_001142633, intron 5 of 18) intron (NM_001142633, intron 5 of 18) 17460 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 242.167-27 chr8 5508022 5508329 + 1.16667 NA Intergenic L1MEd|LINE|L1 -513261 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 384.167-7 chr22 24155329 24156040 + 1.16667 NA intron (NM_012295, intron 29 of 36) MER91C|DNA|hAT-Tip100 -25803 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 234.5-15 chr16 35132332 35132830 + 1.16667 NA Intergenic Intergenic 37810 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 237.167-26 chr8 113427357 113427764 + 1.16667 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 9379 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 231.167-29 chr6 90764504 90764948 + 1.16667 NA Intergenic Intergenic -177654 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 412.167 chr1 11710953 11711665 + 1.16667 NA intron (NM_198545, intron 3 of 6) intron (NM_198545, intron 3 of 6) 19599 NM_198545 374946 Hs.632364 NM_198545 ENSG00000162490 DRAXIN AGPA3119|C1orf187|UNQ3119|neucrin dorsal inhibitory axon guidance protein protein-coding 307.167-13 chr19 3762287 3762560 + 1.16667 NA promoter-TSS (NM_004886) promoter-TSS (NM_004886) -259 NM_172251 116541 Hs.356578 NM_172251 ENSG00000183617 MRPL54 L54mt|MRP-L54 mitochondrial ribosomal protein L54 protein-coding 165.667-37 chr3 195342907 195343238 + 1.16667 NA intron (NM_012287, intron 5 of 22) intron (NM_012287, intron 5 of 22) -71913 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 170.334-12 chr9 7984265 7984538 + 1.16667 NA Intergenic Intergenic -184623 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 193.333-49 chr6 11792952 11793315 + 1.16667 NA Intergenic L1MDa|LINE|L1 -14086 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 274.834-2 chr16 25440783 25441034 + 1.16667 NA Intergenic Intergenic -183063 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 269.167-16 chr5 164958590 164958831 + 1.16667 NA Intergenic Intergenic 488431 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 198.001-2 chr2 230519877 230520356 + 1.16667 NA intron (NM_001080391, intron 24 of 28) intron (NM_001080391, intron 24 of 28) 103360 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 240-38 chr3 167652219 167652578 + 1.16667 NA intron (NM_001348951, intron 2 of 18) intron (NM_001348951, intron 2 of 18) 1544 NM_001348952 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 318.667-17 chr9 87700974 87701370 + 1.16667 NA intron (NM_004938, intron 24 of 25) intron (NM_004938, intron 24 of 25) -24947 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 164.334-4 chr5 114035970 114036110 + 1.16667 NA Intergenic L1PA17|LINE|L1 -326030 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 352.667-2 chr11 112963190 112963599 + 1.16667 NA promoter-TSS (NR_120563) promoter-TSS (NR_120563) 66 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 364.833 chr3 9933510 9934248 + 1.16667 NA promoter-TSS (NM_015513) promoter-TSS (NM_015513) 45 NM_001031717 78987 Hs.9383 NM_015513 ENSG00000163703 CRELD1 AVSD2|CIRRIN cysteine rich with EGF like domains 1 protein-coding 207.167-30 chr8 119394327 119394595 + 1.16667 NA Intergenic Intergenic -21985 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 205.5-23 chr3 104446009 104446441 + 1.16667 NA Intergenic Intergenic -920488 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 252.667 chr1 102521941 102522184 + 1.16667 NA Intergenic Intergenic -524828 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 418.667-2 chr11 95789992 95790783 + 1.16667 NA promoter-TSS (NM_001363604) promoter-TSS (NM_001363604) -74 NM_001363604 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 271.167-5 chr14 30233313 30233647 + 1.16667 NA Intergenic Intergenic -305633 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 253.167-13 chr2 216315780 216316094 + 1.16667 NA intron (NM_020814, intron 1 of 3) intron (NM_020814, intron 1 of 3) 56546 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 249.333-9 chr14 86586815 86587208 + 1.16667 NA Intergenic L1MB8|LINE|L1 -318767 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 224.667-19 chr18 13743393 13743600 + 1.16667 NA intron (NM_003799, intron 8 of 11) intron (NM_003799, intron 8 of 11) 16823 NM_003799 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 186.167-13 chr2 96644587 96645104 + 1.16667 NA intron (NM_001293083, intron 1 of 52) intron (NM_001293083, intron 1 of 52) 2081 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 190.001 chr12 77855887 77856049 + 1.16667 NA intron (NM_001024383, intron 1 of 39) MLT1H|LTR|ERVL-MaLR 25074 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 407.333-4 chr20 36439405 36440207 + 1.16667 NA exon (NM_014902, exon 5 of 13) exon (NM_014902, exon 5 of 13) -21662 NM_001042486 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 270-23 chr2 181104268 181104683 + 1.16667 NA Intergenic Intergenic -19362 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 203.5-2 chr1 45800936 45801314 + 1.16667 NA Intergenic Intergenic -2482 NM_001324320 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 191.667-38 chr4 87651997 87652245 + 1.16667 NA intron (NM_004407, intron 1 of 5) intron (NM_004407, intron 1 of 5) 1841 NM_004407 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 165.5-48 chrX 140770749 140771122 + 1.16667 NA intron (NR_104228, intron 3 of 3) intron (NR_104228, intron 3 of 3) 13623 NM_004065 1038 Hs.446675 NM_004065 ENSG00000184258 CDR1 CDR|CDR34|CDR62A cerebellar degeneration related protein 1 protein-coding 210.5-26 chr22 26277755 26277956 + 1.16667 NA intron (NM_001184776, intron 1 of 14) L2b|LINE|L2 108381 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 209.333-36 chr5 168114562 168114801 + 1.16667 NA intron (NM_001368145, intron 8 of 26) intron (NM_001368145, intron 8 of 26) -51164 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 302-11 chr2 218208258 218208623 + 1.16667 NA Intergenic AluSz|SINE|Alu -8749 NM_152862 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 281.834-4 chr21 14380592 14380918 + 1.16667 NA intron (NM_006948, intron 2 of 4) intron (NM_006948, intron 2 of 4) 2391 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 254.5-8 chr14 72039878 72040290 + 1.16667 NA intron (NM_001370288, intron 2 of 16) L1MB2|LINE|L1 106557 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 178.5-3 chr1 92909396 92909680 + 1.16667 NA intron (NM_001006605, intron 1 of 4) LTR78|LTR|ERV1 -32388 NM_001252271 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 172.5-8 chr10 89894802 89895066 + 1.16667 NA intron (NR_149079, intron 1 of 1) L1PBb|LINE|L1 6800 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 413.667-4 chr2 197499865 197500435 + 1.16667 NA promoter-TSS (NM_001202485) promoter-TSS (NM_001202485) 124 NM_199440 3329 Hs.595053 NM_002156 ENSG00000144381 HSPD1 CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13 heat shock protein family D (Hsp60) member 1 protein-coding 305.334-4 chr11 20013397 20013680 + 1.16667 NA intron (NM_182964, intron 11 of 37) intron (NM_182964, intron 11 of 37) -9018 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 283.001 chr17 35312492 35312851 + 1.16667 NA Intergenic L1PA15-16|LINE|L1 60950 NM_152270 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 331-3 chr1 248618556 248619036 + 1.16667 NA Intergenic Intergenic 8332 NM_001001964 127077 Hs.626619 NM_001001964 ENSG00000279301 OR2T11 OR2T11Q olfactory receptor family 2 subfamily T member 11 (gene/pseudogene) protein-coding 210.334-3 chr1 248241315 248241544 + 1.16667 NA Intergenic Intergenic 2500 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 294-15 chr5 114803480 114803901 + 1.16667 NA Intergenic Intergenic -30277 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 603.335 chr6 86937008 86937792 + 1.16667 NA promoter-TSS (NM_000865) promoter-TSS (NM_000865) -128 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 177.5-41 chr4 174319336 174319598 + 1.16667 NA 3' UTR (NM_001040157, exon 12 of 12) 3' UTR (NM_001040157, exon 12 of 12) -35216 NM_012180 26269 Hs.76917 NM_012180 ENSG00000164117 FBXO8 DC10|FBS|FBX8 F-box protein 8 protein-coding 202.667-47 chrX 87337347 87337672 + 1.16667 NA Intergenic L1MB4|LINE|L1 -180293 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 308.501-4 chr3 86211676 86212004 + 1.16667 NA Intergenic Intergenic -270103 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 279.501-2 chr4 781968 782366 + 1.16667 NA promoter-TSS (NR_036511) promoter-TSS (NR_036511) -319 NR_036511 100129917 Hs.731755 NR_036511 ENSG00000249592 LOC100129917 - uncharacterized LOC100129917 ncRNA 221.834-5 chr2 54380682 54380918 + 1.16667 NA Intergenic Intergenic 49916 NM_001369403 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 238.5-2 chr1 119965894 119966280 + 1.16667 NA intron (NM_001200001, intron 9 of 21) intron (NM_001200001, intron 9 of 21) -69572 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 185.834-7 chr3 121409460 121409752 + 1.16667 NA intron (NM_001348343, intron 24 of 27) MER58B|DNA|hAT-Charlie 136382 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 170.333-12 chr12 39226827 39227210 + 1.16667 NA Intergenic Intergenic 216102 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 184.834-2 chr10 23442221 23442442 + 1.16667 NA TTS (NM_001145373) TTS (NM_001145373) 3062 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 300.667-4 chr14 48915104 48915672 + 1.16667 NA Intergenic Intergenic 670992 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 356.667-7 chr2 188359351 188359757 + 1.16667 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 62062 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 397.334 chr18 5895833 5896248 + 1.16667 NA promoter-TSS (NM_001080209) promoter-TSS (NM_001080209) -86 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 173.334-9 chrX 93731367 93731595 + 1.16667 NA Intergenic L2a|LINE|L2 57275 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 281.167-20 chr5 129949584 129950298 + 1.16667 NA intron (NM_175856, intron 2 of 2) AluSx1|SINE|Alu 45476 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 383.168 chr13 113848855 113849199 + 1.16667 NA intron (NM_000820, intron 2 of 14) intron (NM_000820, intron 2 of 14) 15049 NM_000820 2621 Hs.646346 NM_000820 ENSG00000183087 GAS6 AXLLG|AXSF growth arrest specific 6 protein-coding 244.667-12 chr15 87038034 87038341 + 1.16667 NA Intergenic L1MEf|LINE|L1 -49761 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 261.667-11 chr14 68478088 68478345 + 1.16667 NA TTS (NM_001321817) TTS (NM_001321817) 150571 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 469-2 chr10 71860290 71861057 + 1.16667 NA Intergenic Charlie4z|DNA|hAT-Charlie -9422 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 236.833-12 chr19 42563613 42563997 + 1.16667 NA intron (NR_073180, intron 2 of 2) L1MC4a|LINE|L1 31119 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 274.667-16 chr3 80143670 80144040 + 1.16667 NA Intergenic L1MA3|LINE|L1 -375857 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 193.5-42 chr5 155384356 155384649 + 1.16667 NA Intergenic L1MD2|LINE|L1 370747 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 216.5-6 chr1 227442287 227442576 + 1.16667 NA Intergenic L2c|LINE|L2 -121125 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 253.833-2 chr11 113598192 113598660 + 1.16667 NA Intergenic L1MEh|LINE|L1 107882 NM_001288750 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 232.667-12 chr15 45795381 45795730 + 1.16667 NA intron (NR_135680, intron 1 of 4) intron (NR_135680, intron 1 of 4) 90360 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 224.167-13 chr18 7503469 7503912 + 1.16667 NA Intergenic MER44A|DNA|TcMar-Tigger -42684 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 217.667-28 chr21 21232288 21232636 + 1.16667 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 85300 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 265.667-5 chr10 83664699 83665043 + 1.16667 NA Intergenic Intergenic 12218 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 244.5-28 chr6 43126343 43126570 + 1.16667 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) -44813 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 417.334 chr1 202888563 202889295 + 1.16667 NA intron (NM_002871, intron 1 of 1) CpG 220 NM_002871 5877 Hs.90875 NM_002871 ENSG00000183155 RABIF MSS4|RASGFR3|RASGRF3 RAB interacting factor protein-coding 213.667 chr1 210152539 210152789 + 1.16667 NA intron (NM_153262, intron 6 of 7) L1ME3B|LINE|L1 -80132 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 186.667-11 chr10 9361730 9362048 + 1.16667 NA Intergenic Intergenic -66296 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 376.333-6 chr11 130100549 130101148 + 1.16667 NA intron (NM_001243299, intron 1 of 16) intron (NM_001243299, intron 1 of 16) 30280 NM_001243299 334 Hs.370247 NM_001642 ENSG00000084234 APLP2 APLP-2|APPH|APPL2|CDEBP amyloid beta precursor like protein 2 protein-coding 386.667-5 chr17 20116084 20116797 + 1.16667 NA intron (NM_001033553, intron 3 of 14) L1MD|LINE|L1 29418 NM_001033553 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 196.167-15 chr15 60135970 60136226 + 1.16667 NA Intergenic Intergenic 131787 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 262-23 chr5 110727931 110728239 + 1.16667 NA Intergenic Intergenic -1414 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 311.167-15 chr9 19458634 19459176 + 1.16667 NA Intergenic MIRc|SINE|MIR 49896 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 277.833-4 chr12 14453973 14454562 + 1.16667 NA intron (NM_181352, intron 6 of 14) intron (NM_181352, intron 6 of 14) 68986 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 232.334-4 chr16 25698080 25698523 + 1.16667 NA intron (NM_006040, intron 1 of 1) L2a|LINE|L2 6342 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 251.667-19 chr2 27889792 27890197 + 1.16667 NA promoter-TSS (NM_001329113) promoter-TSS (NM_001329113) 393 NM_022128 64080 Hs.11916 NM_022128 ENSG00000171174 RBKS RBSK|RK ribokinase protein-coding 277.667-2 chr11 76073235 76073802 + 1.16667 NA intron (NM_003369, intron 13 of 14) Charlie1a|DNA|hAT-Charlie 132984 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 269.501-4 chr3 42632729 42632985 + 1.16667 NA intron (NM_001349126, intron 11 of 18) intron (NM_001349126, intron 11 of 18) -20840 NM_145166 92999 Hs.409561 NM_145166 ENSG00000114853 ZBTB47 ZNF651 zinc finger and BTB domain containing 47 protein-coding 275-10 chr14 79883782 79884036 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie -327510 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 325.667-10 chr4 87372277 87372817 + 1.16667 NA intron (NM_016245, intron 4 of 6) intron (NM_016245, intron 4 of 6) 18641 NM_016245 51170 Hs.594923 NM_016245 ENSG00000198189 HSD17B11 17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2 hydroxysteroid 17-beta dehydrogenase 11 protein-coding 357.167-2 chr12 7218223 7218894 + 1.16667 NA TTS (NM_001131026) TTS (NM_001131026) 28196 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 169-10 chr11 93626486 93626692 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -35093 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 185.5-10 chr11 67482783 67483156 + 1.16667 NA promoter-TSS (NM_003977) promoter-TSS (NM_003977) -57 NM_003977 9049 Hs.412433 NM_003977 ENSG00000110711 AIP ARA9|FKBP16|FKBP37|PITA1|SMTPHN|XAP-2|XAP2 aryl hydrocarbon receptor interacting protein protein-coding 172.5-26 chr2 119419047 119419245 + 1.16667 NA Intergenic MER34A1|LTR|ERV1 -12708 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 228.001-4 chr19 47284025 47284252 + 1.16667 NA Intergenic AluJo|SINE|Alu 9253 NM_178511 255783 Hs.128690 NM_178511 ENSG00000257704 INAFM1 PRR24 InaF motif containing 1 protein-coding 268.167 chr1 67767869 67768172 + 1.16667 NA intron (NM_018841, intron 2 of 3) FLAM_A|SINE|Alu -64268 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 280.667-7 chr12 103575050 103575674 + 1.16667 NA Intergenic MamGypLTR3|LTR|Gypsy -11911 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 238.334 chr1 18232225 18232429 + 1.16667 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 124529 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 251.667-30 chr6 34628641 34629148 + 1.16667 NA intron (NM_022758, intron 2 of 3) AluJb|SINE|Alu -67260 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 207-30 chr7 66781021 66781421 + 1.16667 NA intron (NM_001367750, intron 2 of 5) L1MEc|LINE|L1 25339 NM_001287061 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 210.5-32 chr5 51171762 51172042 + 1.16667 NA Intergenic Intergenic -201715 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 185-32 chr2 187096662 187096924 + 1.16667 NA Intergenic L1MC4|LINE|L1 -247623 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 167.167-24 chr4 59406338 59406512 + 1.16667 NA Intergenic Intergenic 392852 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 183.334-2 chr10 26775882 26776213 + 1.16667 NA intron (NM_001012750, intron 3 of 10) intron (NM_001012750, intron 3 of 10) 78346 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 219-5 chr12 9932871 9933190 + 1.16667 NA promoter-TSS (NM_001130711) promoter-TSS (NM_001130711) -660 NM_001130711 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 332.667-5 chr15 85536070 85536632 + 1.16667 NA intron (NM_007200, intron 4 of 36) L1ME1|LINE|L1 -83599 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 296.5-10 chr13 20196615 20197063 + 1.16667 NA Intergenic Intergenic -3901 NM_004004 2706 Hs.524894 NM_004004 ENSG00000165474 GJB2 CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK gap junction protein beta 2 protein-coding 226.5-5 chr1 223127026 223127502 + 1.16667 NA intron (NM_003268, intron 5 of 5) intron (NM_003268, intron 5 of 5) 15984 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 201.167-32 chr9 78428280 78428502 + 1.16667 NA Intergenic L1MA4|LINE|L1 131266 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 190.167 chr1 216316102 216316324 + 1.16667 NA intron (NM_206933, intron 9 of 71) intron (NM_206933, intron 9 of 71) 107183 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 203.334-6 chr2 226065512 226065753 + 1.16667 NA Intergenic Intergenic -77162 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 228.167-17 chr2 169146039 169146252 + 1.16667 NA intron (NM_004525, intron 69 of 78) intron (NM_004525, intron 69 of 78) 65038 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 185.834-3 chr14 20866779 20867148 + 1.16667 NA Intergenic Intergenic -24440 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 208.5-2 chr10 17372561 17372759 + 1.16667 NA intron (NM_001004470, intron 3 of 7) (TAA)n|Simple_repeat|Simple_repeat -14276 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 214.5-5 chr10 67968080 67968410 + 1.16667 NA intron (NM_001278185, intron 15 of 23) intron (NM_001278185, intron 15 of 23) 42638 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 207.501-2 chr9 68908166 68908356 + 1.16667 NA intron (NM_003558, intron 8 of 15) intron (NM_003558, intron 8 of 15) 67580 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 167.667-11 chr15 96404713 96405002 + 1.16667 NA Intergenic Intergenic 71092 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 282.334-6 chr9 71178336 71178637 + 1.16667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -56865 NM_001366149 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 190.5-35 chr4 158857028 158857308 + 1.16667 NA intron (NM_001346043, intron 8 of 15) intron (NM_001346043, intron 8 of 15) 51329 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 261.167-8 chr15 57485956 57486200 + 1.16667 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -105826 NM_001018091 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 256.333-20 chr6 37499867 37500239 + 1.16667 NA promoter-TSS (NM_138493) promoter-TSS (NM_138493) -160 NM_138493 154467 Hs.284207 NM_138493 ENSG00000198937 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 165.834-3 chr14 54547367 54547593 + 1.16667 NA Intergenic Intergenic -20132 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 275.333-2 chr10 32195793 32196490 + 1.16667 NA Intergenic AluSz|SINE|Alu -139716 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 218-16 chr15 70792225 70792498 + 1.16667 NA Intergenic MIR3|SINE|MIR -28803 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 254.667-31 chr6 61853481 61853732 + 1.16667 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 279476 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 293.833-12 chr8 135228610 135229059 + 1.16667 NA Intergenic Intergenic -5297 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 205.5-44 chr9 114682494 114682830 + 1.16667 NA promoter-TSS (NM_001199233) promoter-TSS (NM_001199233) -573 NM_001199233 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 239-12 chr17 9136588 9136867 + 1.16667 NA intron (NM_004822, intron 2 of 6) intron (NM_004822, intron 2 of 6) 42391 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 312.167-10 chrX 63346227 63346689 + 1.16667 NA TTS (NM_001012968) TTS (NM_001012968) 4874 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 357.5-10 chr5 55993280 55993694 + 1.16667 NA intron (NR_157112, intron 1 of 17) intron (NR_157112, intron 1 of 17) 1476 NM_001364277 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 415.166-2 chr17 44138200 44139198 + 1.16667 NA Intergenic MER3|DNA|hAT-Charlie -3231 NM_001321311 78995 Hs.437059 NM_024032 ENSG00000125319 C17orf53 - chromosome 17 open reading frame 53 protein-coding 285-4 chr11 39567451 39567729 + 1.16667 NA Intergenic Intergenic 725540 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 206.5-44 chr4 168992645 168992878 + 1.16667 NA intron (NM_032783, intron 4 of 4) L1ME4a|LINE|L1 17494 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 190.167-18 chr5 76791800 76792051 + 1.16667 NA Intergenic L2a|LINE|L2 -27105 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 216.001 chr14 64156133 64156322 + 1.16667 NA intron (NM_015180, intron 85 of 114) intron (NM_015180, intron 85 of 114) -57917 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 164-9 chr11 9409654 9409937 + 1.16667 NA intron (NM_006391, intron 3 of 24) intron (NM_006391, intron 3 of 24) -18971 NR_002962 677808 Hs.689720 NR_002962 ENSG00000201998 SNORA23 ACA23 small nucleolar RNA, H/ACA box 23 snoRNA 339.167-11 chr4 69822593 69822979 + 1.16667 NA Intergenic L2c|LINE|L2 37359 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 441.833-4 chr21 23452688 23453224 + 1.16667 NA Intergenic LTR13|LTR|ERVK -68121 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 256.5-23 chr7 121028898 121029269 + 1.16667 NA intron (NM_001105533, intron 2 of 17) L1ME4a|LINE|L1 39692 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 164.667-55 chrX 12946687 12947004 + 1.16667 NA Intergenic Intergenic -3545 NR_030727 349408 Hs.685035 NR_030727 ENSG00000233338 TLR8-AS1 GS1-324M7.6 TLR8 antisense RNA 1 ncRNA 266.834-6 chr6 166989572 166989906 + 1.16667 NA Intergenic MER34A1|LTR|ERV1 8173 NR_037504 100500857 NR_037504 ENSG00000265828 MIR3939 mir-3939 microRNA 3939 ncRNA 256.834-6 chr5 10929649 10929967 + 1.16667 NA Intergenic L1MEg|LINE|L1 -168574 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 276-11 chr17 57473308 57473595 + 1.16667 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 50146 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 219.334-3 chr11 80155676 80156211 + 1.16667 NA Intergenic Intergenic 606860 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 303.834 chr14 43590178 43590660 + 1.16667 NA Intergenic Intergenic 916864 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 441 chr10 60159274 60159820 + 1.16667 NA intron (NM_001204404, intron 23 of 43) L1MA4|LINE|L1 -18531 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 217.167-5 chr1 246017792 246018073 + 1.16667 NA intron (NM_022743, intron 5 of 11) L1MC4|LINE|L1 399480 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 296.334-3 chr10 6845410 6845812 + 1.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie 66013 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 365.334-8 chr5 67238091 67238618 + 1.16667 NA Intergenic Intergenic -41555 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 333.001-5 chr3 168250652 168251007 + 1.16667 NA intron (NR_021485, intron 1 of 15) intron (NR_021485, intron 1 of 15) 1307 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 164.834-6 chr21 28156538 28156740 + 1.16667 NA intron (NR_126012, intron 5 of 5) Tigger2a|DNA|TcMar-Tigger 66236 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 173.834-4 chr2 107740299 107740546 + 1.16667 NA Intergenic Intergenic -13690 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 213.667-26 chr2 147740270 147740693 + 1.16667 NA Intergenic Intergenic -104036 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 307.834-9 chr4 71520192 71520496 + 1.16667 NA intron (NM_003759, intron 13 of 22) intron (NM_003759, intron 13 of 22) 181291 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 269.5-8 chr12 64020400 64020768 + 1.16667 NA intron (NM_001346201, intron 4 of 21) AluSx1|SINE|Alu 175884 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 259.834-2 chr16 30634113 30634556 + 1.16667 NA Intergenic Intergenic -16444 NM_001320464 78994 Hs.293629 NM_024031 ENSG00000156858 PRR14 - proline rich 14 protein-coding 201.5-5 chr10 74011453 74011683 + 1.16667 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 13452 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 253.667-31 chr4 136319780 136320185 + 1.16667 NA Intergenic L1M1|LINE|L1 -406302 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 318.167-2 chr10 6647749 6648190 + 1.16667 NA Intergenic Intergenic 12899 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 297.667-17 chr2 129803888 129804234 + 1.16667 NA Intergenic L1ME3G|LINE|L1 73430 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 181.5-2 chr1 25180213 25180604 + 1.16667 NA Intergenic Intergenic 52094 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 229.667-13 chr15 77724054 77724339 + 1.16667 NA intron (NM_001301192, intron 2 of 4) intron (NM_001301192, intron 2 of 4) -3445 NM_001301197 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 248.333-26 chr4 70704681 70704942 + 1.16667 NA promoter-TSS (NM_001130709) promoter-TSS (NM_001130709) -126 NM_001130709 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 278.834-13 chr8 31196052 31196615 + 1.16667 NA Intergenic Intergenic -162977 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 173.833-32 chr7 36468627 36468898 + 1.16667 NA Intergenic Intergenic -78405 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 172.167-4 chr11 7535484 7535786 + 1.16667 NA intron (NM_003621, intron 1 of 23) MIR|SINE|MIR 21636 NM_003621 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 276.834-6 chr4 146418506 146418968 + 1.16667 NA intron (NM_001317816, intron 4 of 10) MER21B|LTR|ERVL 10154 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 202.334-8 chr22 43987089 43987298 + 1.16667 NA intron (NM_015380, intron 12 of 14) L1ME3A|LINE|L1 -12018 NM_001003828 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 244.334-5 chr11 39214433 39214737 + 1.16667 NA Intergenic Intergenic 565727 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 214.5-23 chr3 120623544 120623927 + 1.16667 NA Intergenic LTR10F|LTR|ERV1 27399 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 187.334 chr13 84400447 84400624 + 1.16667 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 259933 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 241.167-24 chr7 40493096 40493584 + 1.16667 NA intron (NM_024728, intron 11 of 14) intron (NM_024728, intron 11 of 14) 358364 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 212.667-5 chr11 112988841 112989201 + 1.16667 NA intron (NM_181351, intron 1 of 18) AluSz6|SINE|Alu -25561 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 183.5-45 chr8 140451205 140451494 + 1.16667 NA exon (NM_031466, exon 2 of 23) exon (NM_031466, exon 2 of 23) 6395 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 200-2 chr1 150255857 150256097 + 1.16667 NA Intergenic Intergenic -1797 NM_012113 23632 Hs.528988 NM_012113 ENSG00000118298 CA14 CAXiV carbonic anhydrase 14 protein-coding 265.001 chr10 56336267 56336752 + 1.16667 NA Intergenic L1M4c|LINE|L1 24750 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 168.333-44 chr3 67478458 67478683 + 1.16667 NA intron (NM_001177599, intron 9 of 10) intron (NM_001177599, intron 9 of 10) 176044 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 269.167-4 chr12 3883286 3883819 + 1.16667 NA Intergenic L1MB8|LINE|L1 -10104 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 251-24 chr4 17633831 17634236 + 1.16667 NA TTS (NM_025205) TTS (NM_025205) 19392 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 258.667-13 chr2 64791644 64792118 + 1.16667 NA Intergenic Intergenic 71750 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 279-16 chr2 13474907 13475298 + 1.16667 NA Intergenic L1MEd|LINE|L1 -468089 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 186-46 chr9 36225868 36226168 + 1.16667 NA intron (NM_005476, intron 7 of 11) intron (NM_005476, intron 7 of 11) 32430 NM_001190383 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 294-20 chr8 78474352 78474766 + 1.16667 NA Intergenic AluSq2|SINE|Alu -41781 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 209.334-7 chr7 34755086 34755291 + 1.16667 NA intron (NR_015356, intron 2 of 4) L1MB8|LINE|L1 3084 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 304.667-19 chr7 62631626 62632046 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 672220 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 172.667-22 chr16 61775161 61775508 + 1.16667 NA intron (NM_001796, intron 8 of 11) intron (NM_001796, intron 8 of 11) 261104 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 389.334-3 chr12 45543488 45544069 + 1.16667 NA Intergenic Intergenic 184143 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 199.834-3 chr15 87317076 87317316 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -259733 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 256.667-22 chr5 24265057 24265514 + 1.16667 NA Intergenic Intergenic 313937 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 209.334-4 chr14 77195052 77195351 + 1.16667 NA intron (NM_020431, intron 1 of 23) intron (NM_020431, intron 1 of 23) 13403 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 193.167-3 chr10 57152893 57153197 + 1.16667 NA Intergenic L1M4|LINE|L1 151514 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 212.667-50 chr8 137976917 137977111 + 1.16667 NA intron (NR_161374, intron 2 of 7) AluSc|SINE|Alu 106531 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 307.001-3 chr22 27523024 27523413 + 1.16667 NA Intergenic AluJr|SINE|Alu 212567 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 293.334 chr1 189945485 189945972 + 1.16667 NA Intergenic Intergenic 530282 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 224.5-21 chr2 59296699 59297167 + 1.16667 NA Intergenic Intergenic 79225 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 360.667-6 chr20 41131481 41131907 + 1.16667 NA intron (NR_109889, intron 4 of 6) L2b|LINE|L2 -5849 NM_182811 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 232.334-9 chr2 121888369 121888760 + 1.16667 NA Intergenic Intergenic 132913 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 497.667-6 chr7 48421090 48421772 + 1.16667 NA intron (NM_152701, intron 41 of 61) L1MC4|LINE|L1 249973 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 178.667-9 chr11 59536591 59536753 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 21759 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 287-4 chr10 123896290 123896563 + 1.16667 NA Intergenic Intergenic -4619 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 217.334-10 chr8 123153132 123153389 + 1.16667 NA intron (NM_001363151, intron 19 of 19) intron (NM_001363151, intron 19 of 19) -25787 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 174-22 chr18 65940406 65940561 + 1.16667 NA Intergenic Intergenic 189471 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 328.667-16 chr7 52142470 52142890 + 1.16667 NA Intergenic Intergenic -749424 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 197-28 chr6 53959952 53960200 + 1.16667 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 30094 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 207-2 chr1 51885979 51886472 + 1.16667 NA Intergenic AluSx|SINE|Alu -7288 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 188.333-17 chr15 61437038 61437430 + 1.16667 NA Intergenic Intergenic -207932 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 425.667 chr13 31044536 31045044 + 1.16667 NA Intergenic Intergenic 112134 NR_148425 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 231.334-5 chr5 180210740 180210987 + 1.16667 NA Intergenic MIR3|SINE|MIR -1652 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 332-9 chr15 65411012 65411519 + 1.16667 NA exon (NM_020962, exon 2 of 20) exon (NM_020962, exon 2 of 20) 11682 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 255.334 chr10 93554943 93555490 + 1.16667 NA Intergenic Intergenic -11449 NM_181745 338557 Hs.661022 NM_181745 ENSG00000186188 FFAR4 BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 free fatty acid receptor 4 protein-coding 209-12 chr13 36999198 36999464 + 1.16667 NA promoter-TSS (NM_001142364) promoter-TSS (NM_001142364) 9 NM_013338 29880 Hs.507769 NM_013338 ENSG00000120697 ALG5 bA421P11.2 ALG5 dolichyl-phosphate beta-glucosyltransferase protein-coding 165.5-8 chr11 44037543 44037806 + 1.16667 NA Intergenic Intergenic -10307 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 247.167-14 chr3 108563521 108563854 + 1.16667 NA intron (NM_020890, intron 12 of 20) intron (NM_020890, intron 12 of 20) 25751 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 CIP2A KIAA1524|p90 cell proliferation regulating inhibitor of protein phosphatase 2A protein-coding 475.333-4 chr16 77661841 77662756 + 1.16667 NA Intergenic LTR10E|LTR|ERV1 -60194 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 184.167-16 chr18 62903548 62903718 + 1.16667 NA intron (NM_194449, intron 7 of 16) AluJb|SINE|Alu 188092 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 289.667-23 chr7 151782802 151783252 + 1.16667 NA intron (NM_016203, intron 2 of 15) CpG -23311 NM_001354885 644090 Hs.647065 NM_001354885 LOC644090 - uncharacterized LOC644090 protein-coding 234.167-5 chr10 53330516 53330796 + 1.16667 NA Intergenic Intergenic -558956 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 203.667-46 chr7 37865417 37865727 + 1.16667 NA exon (NM_016616, exon 10 of 18) exon (NM_016616, exon 10 of 18) 16975 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 208-9 chr12 41651505 41651757 + 1.16667 NA Intergenic Intergenic -112558 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 254.001-2 chr2 200712612 200712829 + 1.16667 NA non-coding (NR_037886, exon 3 of 3) non-coding (NR_037886, exon 3 of 3) 16997 NR_135012 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 209.834 chr1 63442434 63442638 + 1.16667 NA intron (NM_001347145, intron 7 of 7) intron (NM_001347145, intron 7 of 7) 74909 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 207.333-50 chr8 33805752 33806125 + 1.16667 NA Intergenic Intergenic -205832 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 491.834 chr15 98646387 98647228 + 1.16667 NA non-coding (NR_126453, exon 1 of 1) non-coding (NR_126453, exon 1 of 1) -1732 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 233.333-29 chr6 142861951 142862358 + 1.16667 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 83022 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 284.834-2 chr12 79546346 79546674 + 1.16667 NA Intergenic MER41A|LTR|ERV1 127253 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 283-10 chr20 39412621 39412980 + 1.16667 NA Intergenic L2b|LINE|L2 -188052 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 198.334-9 chr7 5343612 5343885 + 1.16667 NA intron (NM_001080495, intron 18 of 29) Tigger1|DNA|TcMar-Tigger 60805 NM_153247 222962 Hs.4302 NM_153247 ENSG00000164638 SLC29A4 ENT4|PMAT solute carrier family 29 member 4 protein-coding 266.5-26 chr8 102651969 102652238 + 1.16667 NA intron (NM_001032282, intron 2 of 3) intron (NM_001032282, intron 2 of 3) 1861 NR_103759 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 222.334-2 chr17 27772224 27772635 + 1.16667 NA exon (NM_000625, exon 14 of 27) exon (NM_000625, exon 14 of 27) 28100 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 276.001 chr1 73815440 73815829 + 1.16667 NA Intergenic L1M1|LINE|L1 140955 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 263.834-2 chr12 44093516 44093963 + 1.16667 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 257658 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 166.5-5 chr10 125045851 125046044 + 1.16667 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -13077 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 183.5-2 chr1 27568509 27568691 + 1.16667 NA intron (NM_001029882, intron 1 of 6) CpG 34894 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 179.5-10 chr12 22036243 22036549 + 1.16667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -9778 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 178.667-42 chr8 119129654 119129879 + 1.16667 NA Intergenic Tigger13a|DNA|TcMar-Tigger -60984 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 248-6 chr10 24900907 24901197 + 1.16667 NA intron (NM_020200, intron 3 of 8) intron (NM_020200, intron 3 of 8) 51554 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 231.501-4 chr8 118429233 118429446 + 1.16667 NA intron (NM_001349811, intron 3 of 4) Tigger4a|DNA|TcMar-Tigger -191662 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 232.167-8 chr14 59116767 59117102 + 1.16667 NA Intergenic L2c|LINE|L2 -71733 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 332-26 chr7 38660651 38661261 + 1.16667 NA Intergenic L1PA16|LINE|L1 26133 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 221.334-9 chr3 152026249 152026559 + 1.16667 NA Intergenic Intergenic -98229 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 322.5-17 chr3 42117472 42117918 + 1.16667 NA intron (NM_001349247, intron 1 of 16) intron (NM_001349247, intron 1 of 16) 26338 NM_001042646 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 286.5-6 chr17 57988353 57988802 + 1.16667 NA promoter-TSS (NM_007146) promoter-TSS (NM_007146) -323 NM_007146 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 271.334-15 chr7 32062328 32062680 + 1.16667 NA intron (NM_001191059, intron 2 of 18) L2c|LINE|L2 7903 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 198.334-5 chr4 128454381 128454701 + 1.16667 NA intron (NR_125882, intron 1 of 8) intron (NR_125882, intron 1 of 8) 26525 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 196.667-15 chr14 53827248 53827425 + 1.16667 NA Intergenic AluJr4|SINE|Alu 121148 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 184.833-7 chr11 31871937 31872230 + 1.16667 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) 45516 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 357.334-5 chr7 83411602 83411941 + 1.16667 NA intron (NM_001178129, intron 5 of 16) intron (NM_001178129, intron 5 of 16) 229660 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 347.501 chr1 69227205 69227799 + 1.16667 NA Intergenic Charlie5|DNA|hAT-Charlie 171604 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 346.5-6 chr2 27196020 27196630 + 1.16667 NA Intergenic AluSg7|SINE|Alu -15706 NM_080592 51374 Hs.9527 NM_016085 ENSG00000138085 ATRAID APR--3|APR-3|APR3|C2orf28|HSPC013|PRO240|p18 all-trans retinoic acid induced differentiation factor protein-coding 258.501-2 chr18 75210533 75210754 + 1.16667 NA promoter-TSS (NM_001308210) promoter-TSS (NM_001308210) -154 NM_005786 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 321.5-3 chr1 182029661 182030091 + 1.16667 NA Intergenic CpG 31836 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 289.167-7 chr14 79368964 79369366 + 1.16667 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 89785 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 268.834-2 chr11 43951675 43952047 + 1.16667 NA Intergenic AluSz|SINE|Alu 9224 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 393.668 chr19 28070267 28070639 + 1.16667 NA Intergenic MER31-int|LTR|ERV1 -276513 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 257.334-7 chr8 112740188 112740519 + 1.16667 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 96860 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 407.001-3 chr16 84904859 84905447 + 1.16667 NA intron (NM_031476, intron 14 of 14) AluJb|SINE|Alu 85168 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 184.667-43 chr6 57312806 57313030 + 1.16667 NA Intergenic L1M5|LINE|L1 -1887 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 332-13 chr2 76189096 76189631 + 1.16667 NA Intergenic Intergenic -478448 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 168.5-27 chr2 200308310 200308467 + 1.16667 NA promoter-TSS (NM_001282744) promoter-TSS (NM_001282744) -562 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 172.5-47 chr6 5253427 5253574 + 1.16667 NA intron (NM_020408, intron 1 of 2) HSMAR1|DNA|TcMar-Mariner 7450 NR_104417 57128 Hs.387755 NM_020408 ENSG00000214113 LYRM4 C6orf149|CGI-203|COXPD19|ISD11 LYR motif containing 4 protein-coding 170.834-2 chr17 75779466 75779712 + 1.16667 NA intron (NM_005324, intron 1 of 3) CpG-11668 190 NM_005324 3021 Hs.180877 NM_005324 ENSG00000132475 H3F3B H3.3B H3 histone family member 3B protein-coding 163.5-24 chr2 76188199 76188396 + 1.16667 NA Intergenic Intergenic -477382 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 179.334-9 chr5 24576690 24576885 + 1.16667 NA intron (NM_001362460, intron 2 of 9) L1MC3|LINE|L1 68191 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 313.167-2 chr10 51613908 51614273 + 1.16667 NA intron (NM_001098512, intron 3 of 17) L1MA4A|LINE|L1 85505 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 175.834-6 chr2 50984778 50985136 + 1.16667 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 47175 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 461.501-2 chr10 114863910 114864365 + 1.16667 NA 3' UTR (NM_020940, exon 17 of 17) 3' UTR (NM_020940, exon 17 of 17) 42357 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 232.834-2 chr10 27838037 27838388 + 1.16667 NA intron (NM_018076, intron 19 of 19) intron (NM_018076, intron 19 of 19) -92393 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 517.501-2 chr11 123711088 123711881 + 1.16667 NA Intergenic Intergenic 19501 NM_001301819 7753 Hs.112556 NM_003455 ENSG00000166261 ZNF202 ZKSCAN10|ZSCAN42 zinc finger protein 202 protein-coding 233.167-21 chr7 34476529 34476918 + 1.16667 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -181495 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 282.167-18 chr7 42886612 42886903 + 1.16667 NA Intergenic AluJb|SINE|Alu 25086 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 179.667-49 chr8 104478016 104478465 + 1.16667 NA Intergenic AluSx|SINE|Alu 6225 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 213.834-12 chr9 89801433 89801654 + 1.16667 NA Intergenic Intergenic 161760 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 182.334-4 chr21 32327815 32327994 + 1.16667 NA intron (NM_014825, intron 30 of 38) L1MEc|LINE|L1 36091 NM_178817 56246 Hs.584940 NM_178817 ENSG00000170262 MRAP B27|C21orf61|FALP|FGD2|GCCD2 melanocortin 2 receptor accessory protein protein-coding 306.001-4 chr15 64071024 64071483 + 1.16667 NA Intergenic Charlie23a|DNA|hAT-Charlie 22585 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 177.167 chr1 64727530 64727713 + 1.16667 NA Intergenic Intergenic -17352 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 206.667-51 chr7 92355923 92356127 + 1.16667 NA intron (NM_019004, intron 9 of 19) intron (NM_019004, intron 9 of 19) 81289 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 244.167-2 chr1 86939746 86940250 + 1.16667 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 25363 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 222.167-26 chr20 49288398 49288682 + 1.16667 NA intron (NR_003604, intron 4 of 4) AluJo|SINE|Alu 7857 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 194.833-6 chr11 131033124 131033529 + 1.16667 NA Intergenic Intergenic -116839 NM_001347927 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 385.167-14 chr9 27326133 27326544 + 1.16667 NA 3' UTR (NM_024761, exon 4 of 4) 3' UTR (NM_024761, exon 4 of 4) -29188 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 242-21 chr20 57279145 57279419 + 1.16667 NA Intergenic Intergenic -12641 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 296.167-17 chr6 75798821 75799278 + 1.16667 NA intron (NM_001368139, intron 2 of 9) L1P4|LINE|L1 49810 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 580.167 chr14 23327809 23328622 + 1.16667 NA Intergenic Intergenic 6209 NM_001360552 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 308.167-10 chr2 112045760 112046184 + 1.16667 NA Intergenic L1MEc|LINE|L1 -9297 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 231.834-6 chr17 61538641 61538864 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 52467 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 251.667-11 chr12 45788583 45789147 + 1.16667 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 59156 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 189.5-45 chrX 96536355 96536777 + 1.16667 NA Intergenic Intergenic -148097 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 180.667-11 chr11 31627872 31628079 + 1.16667 NA intron (NM_001288725, intron 6 of 10) intron (NM_001288725, intron 6 of 10) 118208 NM_001288726 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 242.834-4 chr10 32238465 32238825 + 1.16667 NA Intergenic L1MA9|LINE|L1 108513 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 207.834-2 chr10 63268135 63268408 + 1.16667 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) 952 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 173.333-11 chr15 94026652 94026893 + 1.16667 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 81166 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 206.5-53 chr7 113288878 113289399 + 1.16667 NA Intergenic MER30|DNA|hAT-Charlie -170556 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 184.167-33 chr8 113671225 113671436 + 1.16667 NA Intergenic L1MDb|LINE|L1 -234391 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 340.001 chr2 195383039 195383442 + 1.16667 NA Intergenic AluY|SINE|Alu -273718 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 247.667-29 chr4 37219226 37219746 + 1.16667 NA Intergenic Intergenic 22505 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 355.501-3 chr9 31405791 31406132 + 1.16667 NA Intergenic Intergenic -24471 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 243.333-32 chr4 88211917 88212364 + 1.16667 NA intron (NM_001348985, intron 1 of 16) intron (NM_001348985, intron 1 of 16) 19486 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 192.167 chr1 18244734 18244923 + 1.16667 NA intron (NM_032880, intron 2 of 9) L1M5|LINE|L1 137030 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 181-16 chr16 14392408 14392791 + 1.16667 NA Intergenic Intergenic -22333 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 229.501-2 chr16 23372986 23373244 + 1.16667 NA intron (NM_000336, intron 7 of 12) AluSz|SINE|Alu 70813 NM_000336 6338 Hs.414614 NM_000336 ENSG00000168447 SCNN1B BESC1|ENaCb|ENaCbeta|LIDLS1|SCNEB sodium channel epithelial 1 beta subunit protein-coding 332.834-4 chr5 11879604 11880076 + 1.16667 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 24606 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 204.834-7 chr2 77382108 77382410 + 1.16667 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 140117 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 258.334-6 chr3 192107956 192108341 + 1.16667 NA Intergenic Intergenic -130482 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 203.001-2 chr18 21566252 21566437 + 1.16667 NA intron (NM_052911, intron 5 of 11) intron (NM_052911, intron 5 of 11) 34360 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 296.5-20 chr3 147902767 147903356 + 1.16667 NA Intergenic L1MEi|LINE|L1 -175098 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 210.167-13 chr15 26921672 26922024 + 1.16667 NA intron (NM_001165037, intron 7 of 10) L1MDa|LINE|L1 -49333 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 194.667-28 chr17 69150220 69150461 + 1.16667 NA intron (NM_080282, intron 37 of 39) intron (NM_080282, intron 37 of 39) -8445 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 232.167-16 chr4 123466478 123466741 + 1.16667 NA Intergenic Intergenic 67069 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 252.167-5 chr14 22226004 22226254 + 1.16667 NA Intergenic Intergenic 206624 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 223.167-4 chr12 56078740 56079040 + 1.16667 NA Intergenic Intergenic -1135 NM_001982 2065 Hs.118681 NM_001982 ENSG00000065361 ERBB3 ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 erb-b2 receptor tyrosine kinase 3 protein-coding 195-36 chr5 30451901 30452225 + 1.16667 NA Intergenic Intergenic 571503 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 221.001-3 chr20 22996311 22996536 + 1.16667 NA Intergenic Intergenic -38997 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 303.334-14 chr5 26756496 26756978 + 1.16667 NA Intergenic L1MB7|LINE|L1 281849 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 173-26 chr2 212710579 212710827 + 1.16667 NA Intergenic Intergenic -84628 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 260.667-24 chr19 47305254 47305711 + 1.16667 NA Intergenic Intergenic -4379 NM_001736 728 Hs.2161 NM_001736 ENSG00000197405 C5AR1 C5A|C5AR|C5R1|CD88 complement C5a receptor 1 protein-coding 231.167-7 chr10 84743731 84743935 + 1.16667 NA Intergenic L1MEf|LINE|L1 318664 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 256.334-11 chr8 31643193 31643558 + 1.16667 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 3623 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 178.167-9 chr14 22221452 22221695 + 1.16667 NA Intergenic Intergenic 211180 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 207.334-3 chr14 65470208 65470522 + 1.16667 NA promoter-TSS (NR_030355) promoter-TSS (NR_030355) -737 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 178.834-11 chr9 22825085 22825357 + 1.16667 NA Intergenic Intergenic 179021 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 197.667-40 chr5 63886721 63887005 + 1.16667 NA Intergenic MIR|SINE|MIR 75429 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 199.667-16 chr16 50134157 50134385 + 1.16667 NA Intergenic ERVL-B4-int|LTR|ERVL -18640 NM_001365323 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 189-51 chr7 37234958 37235339 + 1.16667 NA intron (NM_001206480, intron 7 of 21) intron (NM_001206480, intron 7 of 21) 118520 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 205.667-2 chr1 175338504 175338741 + 1.16667 NA intron (NM_003285, intron 18 of 22) intron (NM_003285, intron 18 of 22) -145635 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 176.334-4 chr5 39240757 39240969 + 1.16667 NA intron (NM_001243093, intron 1 of 18) L1PA15|LINE|L1 -21300 NM_001465 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 181.167-24 chr4 127539686 127539888 + 1.16667 NA Intergenic Intergenic -93170 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 236.667-18 chr3 30827936 30828231 + 1.16667 NA intron (NM_207359, intron 11 of 14) intron (NM_207359, intron 11 of 14) 66578 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 227.5-16 chr17 692204 692499 + 1.16667 NA intron (NM_001366254, intron 4 of 19).2 intron (NM_001366254, intron 4 of 19).2 22488 NM_018289 55275 Hs.461819 NM_018289 ENSG00000141252 VPS53 HCCS1|PCH2E|hVps53L|pp13624 VPS53 subunit of GARP complex protein-coding 227.667-15 chr16 30984879 30985098 + 1.16667 NA promoter-TSS (NM_001142777) promoter-TSS (NM_001142777) -219 NM_001142778 80270 Hs.460618 NM_025193 ENSG00000099377 HSD3B7 CBAS1|PFIC4|SDR11E3 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding 311.167 chr1 233836516 233836848 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -67994 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 253-25 chr4 33134434 33134778 + 1.16667 NA Intergenic MLT1F2|LTR|ERVL-MaLR 783568 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 238.5-22 chr20 59781804 59782086 + 1.16667 NA intron (NM_080672, intron 7 of 12) intron (NM_080672, intron 7 of 12) 60735 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 346.501 chr12 56360205 56360548 + 1.16667 NA promoter-TSS (NM_005419) promoter-TSS (NM_005419) -269 NM_005419 6773 Hs.530595 NM_005419 ENSG00000170581 STAT2 IMD44|ISGF-3|P113|STAT113 signal transducer and activator of transcription 2 protein-coding 246-3 chr10 92522011 92522393 + 1.16667 NA intron (NR_136399, intron 4 of 25) intron (NR_136399, intron 4 of 25) -24441 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 335.334-5 chr15 95869464 95869864 + 1.16667 NA Intergenic Intergenic 258177 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 254.5-35 chrX 103343100 103343510 + 1.16667 NA Intergenic Intergenic 13066 NM_152278 56849 Hs.21861 NM_152278 ENSG00000182916 TCEAL7 WEX5 transcription elongation factor A like 7 protein-coding 197.5-37 chr9 103032274 103032544 + 1.16667 NA Intergenic L1MC3|LINE|L1 37076 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 289.167-16 chr6 157110805 157111257 + 1.16667 NA intron (NM_020732, intron 7 of 19) MIR3|SINE|MIR 74604 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 182.667-14 chr14 45074084 45074291 + 1.16667 NA non-coding (NR_131765, exon 20 of 20) non-coding (NR_131765, exon 20 of 20) -9929 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 220.167-25 chr5 75864735 75865079 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -147470 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 163.833-27 chr22 19841496 19841750 + 1.16667 NA intron (NM_053004, intron 2 of 7) AluJo|SINE|Alu 13251 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 332.5-8 chr2 81126236 81126709 + 1.16667 NA Intergenic L1MA2|LINE|L1 340474 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 206.167-15 chr3 115622651 115622910 + 1.16667 NA promoter-TSS (NM_001130064) promoter-TSS (NM_001130064) -730 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 178.334-8 chr7 43954769 43954986 + 1.16667 NA 3' UTR (NM_015983, exon 7 of 7) 3' UTR (NM_015983, exon 7 of 7) 28441 NM_015983 51619 Hs.19196 NM_015983 ENSG00000078967 UBE2D4 HBUCE1 ubiquitin conjugating enzyme E2 D4 (putative) protein-coding 333.5-13 chr2 53182140 53182693 + 1.16667 NA Intergenic Intergenic -479801 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 239.334-7 chr2 74296110 74296462 + 1.16667 NA intron (NM_133478, intron 7 of 30) intron (NM_133478, intron 7 of 30) 18739 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 239.333-24 chr4 74206360 74206678 + 1.16667 NA intron (NM_001144978, intron 5 of 7) LTR38B|LTR|ERV1 48401 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 261.334-2 chr13 21604517 21604876 + 1.16667 NA promoter-TSS (NM_152726) promoter-TSS (NM_152726) -526 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 313.333-2 chr1 58200004 58200509 + 1.16667 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 50247 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 564.834 chr16 71607688 71608492 + 1.16667 NA Intergenic AluSg|SINE|Alu -18094 NM_001017967 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 167.334-5 chr2 203036098 203036330 + 1.16667 NA intron (NM_001114132, intron 2 of 54) intron (NM_001114132, intron 2 of 54) 21335 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 351.667-10 chr2 164013120 164013490 + 1.16667 NA Intergenic Intergenic -277297 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 189.834-3 chr5 75495153 75495346 + 1.16667 NA intron (NM_031361, intron 2 of 16) intron (NM_031361, intron 2 of 16) 16380 NM_031361 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 290.167-11 chr4 76177157 76177514 + 1.16667 NA intron (NM_005506, intron 4 of 11) L1MB7|LINE|L1 -28820 NR_103781 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 237.334-3 chr13 26357258 26357648 + 1.16667 NA intron (NM_001346501, intron 4 of 11) intron (NM_001346501, intron 4 of 11) 103324 NM_001260 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 330.667-11 chr4 143202780 143203144 + 1.16667 NA intron (NM_032557, intron 4 of 9) intron (NM_032557, intron 4 of 9) 18045 NM_032557 84640 Hs.480848 NM_032557 ENSG00000170185 USP38 HP43.8KD ubiquitin specific peptidase 38 protein-coding 289-20 chr6 42616243 42616671 + 1.16667 NA intron (NM_001363705, intron 10 of 46) intron (NM_001363705, intron 10 of 46) 52428 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 306.667-20 chr5 144228157 144228474 + 1.16667 NA intron (NM_001370487, intron 2 of 2) L2-3_Crp|LINE|L2 22924 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 283.001-2 chr7 79775005 79775277 + 1.16667 NA Intergenic Intergenic 321181 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 309.501-2 chr16 68800947 68801289 + 1.16667 NA intron (NM_001317185, intron 2 of 15) AluSx1|SINE|Alu -42413 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 288.5-15 chr18 63848596 63849070 + 1.16667 NA Intergenic L1ME1|LINE|L1 -38872 NM_001143818 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 179.667-16 chr19 28331716 28331983 + 1.16667 NA Intergenic Intergenic -274839 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 176.5-7 chr12 68557014 68557230 + 1.16667 NA Intergenic MIRb|SINE|MIR -53777 NM_001251921 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 207.5-37 chr9 22244662 22244880 + 1.16667 NA Intergenic Intergenic -202053 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 241-14 chr21 35922290 35922676 + 1.16667 NA Intergenic Intergenic 36038 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 258.167 chr1 61214759 61215190 + 1.16667 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 38544 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 372.834-7 chr8 19757365 19757847 + 1.16667 NA promoter-TSS (NM_001354488) promoter-TSS (NM_001354488) -300 NM_001354489 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 221.5-20 chr4 114659900 114660347 + 1.16667 NA intron (NM_003360, intron 1 of 4) intron (NM_003360, intron 1 of 4) 3364 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 197-11 chr16 24042178 24042636 + 1.16667 NA intron (NM_002738, intron 5 of 16) intron (NM_002738, intron 5 of 16) -160709 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 289.834-4 chr2 216412490 216412918 + 1.16667 NA promoter-TSS (NM_001127207) promoter-TSS (NM_001127207) -61 NM_001127207 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 197-6 chr10 58434977 58435207 + 1.16667 NA Intergenic Intergenic 49682 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 327.333-7 chr16 3224897 3225336 + 1.16667 NA intron (NM_198088, intron 4 of 4) intron (NM_198088, intron 4 of 4) 9554 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 346.5-9 chr4 46118357 46118871 + 1.16667 NA intron (NM_173536, intron 1 of 8) L2b|LINE|L2 5440 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 223.334-5 chr3 113245220 113245510 + 1.16667 NA intron (NM_001301861, intron 2 of 19) AluJo|SINE|Alu 33249 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 252.333-10 chr2 110149752 110150071 + 1.16667 NA intron (NM_207181, intron 12 of 19) intron (NM_207181, intron 12 of 19) -33345 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 202.334-10 chrX 150365450 150365845 + 1.16667 NA intron (NM_001177465, intron 1 of 4) CpG-30120 2330 NM_001177465 10046 Hs.20136 NM_005491 ENSG00000013619 MAMLD1 CG1|CXorf6|F18|HYSP2 mastermind like domain containing 1 protein-coding 283.167-4 chr12 15279463 15279806 + 1.16667 NA Intergenic Intergenic -42874 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 249.333-10 chr14 98995807 98996225 + 1.16667 NA Intergenic L1ME1|LINE|L1 276181 NM_138576 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 223.667-47 chr8 117861273 117861627 + 1.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 59463 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 168-46 chr6 126821860 126822192 + 1.16667 NA Intergenic Intergenic -296645 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 185.834-4 chr15 89495091 89495335 + 1.16667 NA intron (NM_001321041, intron 1 of 10) L3|LINE|CR1 1370 NM_001321041 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 169.834-7 chr2 199830319 199830792 + 1.16667 NA intron (NM_001363886, intron 3 of 4) intron (NM_001363886, intron 3 of 4) 20618 NM_001350854 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 179.834-5 chr18 2086031 2086211 + 1.16667 NA Intergenic Intergenic 485384 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 245.667-2 chr10 103509173 103509626 + 1.16667 NA intron (NR_120675, intron 2 of 3) Tigger3c|DNA|TcMar-Tigger 8043 NR_120676 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 320.334-4 chr15 61856037 61856508 + 1.16667 NA intron (NM_020821, intron 83 of 84) intron (NM_020821, intron 83 of 84) 126354 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 201.834-8 chr5 87546536 87546781 + 1.16667 NA Intergenic Intergenic -115384 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 321.667-11 chr7 39231748 39232203 + 1.16667 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 97159 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 364.001-2 chr3 7144680 7145317 + 1.16667 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -250981 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 210-28 chr22 41657180 41657419 + 1.16667 NA intron (NM_001288976, intron 10 of 12) intron (NM_001288976, intron 10 of 12) 31568 NM_001003796 4809 Hs.182255 NM_005008 ENSG00000100138 SNU13 15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1 small nuclear ribonucleoprotein 13 protein-coding 301.167-12 chr3 88094690 88095230 + 1.16667 NA intron (NM_001350135, intron 2 of 6) intron (NM_001350135, intron 2 of 6) 35705 NM_001350136 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 319.167-16 chr5 22926592 22926969 + 1.16667 NA Intergenic Intergenic -73436 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 164.333-50 chr7 137122807 137123079 + 1.16667 NA intron (NR_046103, intron 1 of 3) intron (NR_046103, intron 1 of 3) 41398 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 177.334-2 chr12 123301411 123301578 + 1.16667 NA intron (NM_018183, intron 30 of 31) intron (NM_018183, intron 30 of 31) -29254 NR_073007 8099 Hs.433201 NM_004642 ENSG00000111328 CDK2AP1 DOC1|DORC1|ST19|doc-1|p12DOC-1 cyclin dependent kinase 2 associated protein 1 protein-coding 228.834-6 chr7 106093083 106093363 + 1.16667 NA intron (NM_182715, intron 3 of 4) intron (NM_182715, intron 3 of 4) 19089 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 171-52 chr7 77263324 77263607 + 1.16667 NA intron (NM_020879, intron 9 of 18) MLT1I|LTR|ERVL-MaLR -63646 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 197.334-2 chr13 39779234 39779488 + 1.16667 NA intron (NM_001145079, intron 18 of 18) intron (NM_001145079, intron 18 of 18) -115226 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 205.667-5 chr10 74556729 74557023 + 1.16667 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -27552 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 228.334-10 chr6 34979799 34980060 + 1.16667 NA intron (NM_015245, intron 3 of 23) intron (NM_015245, intron 3 of 23) 90674 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 241.001-4 chr5 68765246 68765644 + 1.16667 NA Intergenic Intergenic 264482 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 233.333-12 chr17 61410963 61411528 + 1.16667 NA promoter-TSS (NR_160788) promoter-TSS (NR_160788) -506 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 237.501 chr1 115761483 115761686 + 1.16667 NA intron (NM_001232, intron 1 of 10) intron (NM_001232, intron 1 of 10) 7221 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 220.834-9 chr8 140200101 140200307 + 1.16667 NA intron (NM_001160372, intron 17 of 22) L1MC3|LINE|L1 -99669 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 319.334-5 chr12 27384954 27385568 + 1.16667 NA intron (NM_001248003, intron 3 of 14) AluSz6|SINE|Alu 52425 NM_001248005 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 272.167-15 chr22 22801877 22802503 + 1.16667 NA Intergenic Intergenic -20586 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 179 chr1 46129205 46129579 + 1.16667 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 1281 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 191.834-5 chr21 27483899 27484132 + 1.16667 NA Intergenic Intergenic -238364 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 194.667-36 chr20 49345691 49345901 + 1.16667 NA Intergenic Intergenic 65113 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 221.167-24 chr5 106600392 106600773 + 1.16667 NA Intergenic Intergenic 410432 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 249.167-6 chr15 61678443 61678881 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR -51256 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 235.834-11 chr8 23410308 23410601 + 1.16667 NA Intergenic Intergenic -6334 NM_002318 4017 Hs.626637 NM_002318 ENSG00000134013 LOXL2 LOR|LOR2|WS9-14 lysyl oxidase like 2 protein-coding 251.333 chr1 182833931 182834223 + 1.16667 NA non-coding (NR_148933, exon 2 of 2) non-coding (NR_148933, exon 2 of 2) -5270 NR_033302 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding 305.834-7 chr4 99808169 99808694 + 1.16667 NA Intergenic Intergenic -8396 NM_001306151 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 192.334-2 chr12 55217369 55217562 + 1.16667 NA Intergenic Intergenic -3560 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 549.667-6 chr9 100322801 100323909 + 1.16667 NA intron (NM_001161584, intron 9 of 14) intron (NM_001161584, intron 9 of 14) 29216 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 316.667-11 chr5 7441205 7441584 + 1.16667 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 45256 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 301.167-13 chr4 44678396 44678893 + 1.16667 NA exon (NM_021927, exon 1 of 17) exon (NM_021927, exon 1 of 17) 224 NM_021927 60558 Hs.546419 NM_021927 ENSG00000151806 GUF1 EF-4|EF4|EIEE40 GUF1 homolog, GTPase protein-coding 329.334-3 chr16 59744654 59744993 + 1.16667 NA Intergenic Intergenic 10368 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 228.667-45 chr7 42036217 42036582 + 1.16667 NA intron (NM_000168, intron 7 of 14) L2a|LINE|L2 200810 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 268-10 chr11 31217580 31218049 + 1.16667 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 151925 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 313.333-14 chr5 4324863 4325428 + 1.16667 NA Intergenic Intergenic -448336 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 223.167-9 chr2 70700394 70700836 + 1.16667 NA intron (NM_017482, intron 4 of 12) L1ME4a|LINE|L1 67100 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 255.501-2 chr2 41042908 41043203 + 1.16667 NA Intergenic L1PA13|LINE|L1 -530620 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 171.167-14 chr16 21953058 21953296 + 1.16667 NA promoter-TSS (NM_003366) promoter-TSS (NM_003366) -184 NM_003366 7385 Hs.528803 NM_003366 ENSG00000140740 UQCRC2 MC3DN5|QCR2|UQCR2 ubiquinol-cytochrome c reductase core protein 2 protein-coding 186.667-57 chr7 10098451 10098649 + 1.16667 NA Intergenic Intergenic 464280 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 233.333-8 chr13 109243421 109243897 + 1.16667 NA Intergenic Intergenic -76356 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 297.833-3 chr11 44457090 44457614 + 1.16667 NA Intergenic Intergenic -108311 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 227.167-16 chr2 188101427 188101877 + 1.16667 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 186039 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 269.667-10 chr16 6270605 6270890 + 1.16667 NA intron (NM_018723, intron 1 of 15) L1MD1|LINE|L1 251044 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 183.667-6 chr10 28205911 28206149 + 1.16667 NA intron (NR_134517, intron 2 of 16) MSTD|LTR|ERVL-MaLR 76093 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 300.833-9 chr5 39901851 39902341 + 1.16667 NA Intergenic Intergenic -150195 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 324.667-19 chr3 128822318 128822753 + 1.16667 NA Intergenic AluJo|SINE|Alu -24273 NR_162138 113219457 NR_162138 MIR12124 - microRNA 12124 ncRNA 185.167-8 chr14 58456371 58456628 + 1.16667 NA intron (NM_001329944, intron 9 of 31) intron (NM_001329944, intron 9 of 31) 16818 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 347.334-5 chr2 166516220 166516928 + 1.16667 NA Intergenic Intergenic -29603 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 270.334-9 chr2 17688702 17688937 + 1.16667 NA intron (NM_024624, intron 22 of 26) intron (NM_024624, intron 22 of 26) 64991 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 213.5-12 chr2 19486251 19486478 + 1.16667 NA Intergenic Intergenic -127741 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 238.334-4 chr12 127650965 127651499 + 1.16667 NA intron (NR_134995, intron 2 of 3) intron (NR_134995, intron 2 of 3) 4356 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 231.833-21 chr8 133512600 133512921 + 1.16667 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 59127 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 324.334-2 chr14_GL000225v1_random 71140 71529 + 1.16667 NA NA LSAU|Satellite|Satellite NA NA 237.334-6 chr15 67311207 67311522 + 1.16667 NA intron (NM_001322475, intron 3 of 17) Charlie15b|DNA|hAT-Charlie -56166 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 300.167-2 chr11 34073479 34073998 + 1.16667 NA intron (NM_005898, intron 4 of 18) intron (NM_005898, intron 4 of 18) 22007 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 256.501-4 chr8 140882753 140883098 + 1.16667 NA intron (NR_148037, intron 4 of 34) intron (NR_148037, intron 4 of 34) 118079 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 179.167-8 chr12 76410117 76410316 + 1.16667 NA intron (NM_001319655, intron 2 of 20) intron (NM_001319655, intron 2 of 20) 13069 NM_001319655 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 283.501-4 chr9 75804786 75805037 + 1.16667 NA Intergenic Intergenic -85733 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 210.167-31 chr8 11574279 11574479 + 1.16667 NA Intergenic FLAM_C|SINE|Alu -2156 NR_040035 83655 Hs.742430 NR_040035 ENSG00000170983 LINC00208 C8orf14|NCRNA00208|VIR35 long intergenic non-protein coding RNA 208 ncRNA 268.334-2 chr14 45453974 45454468 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -201019 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 213.834-11 chr6 41004814 41005042 + 1.16667 NA intron (NR_110873, intron 1 of 5) L1MC5a|LINE|L1 18352 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 199.334-7 chr4 168291655 168291860 + 1.16667 NA exon (NM_017631, exon 8 of 38) exon (NM_017631, exon 8 of 38) 26995 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 302.001-2 chr7 129486423 129486980 + 1.16667 NA 3' UTR (NM_020704, exon 21 of 21) 3' UTR (NM_020704, exon 21 of 21) -15830 NM_001195243 100287482 Hs.178144 NM_001195243 ENSG00000240204 SMKR1 - small lysine rich protein 1 protein-coding 417.833-8 chr22 37657977 37658744 + 1.16667 NA promoter-TSS (NR_109952) promoter-TSS (NR_109952) 17 NR_109952 101927051 NR_109952 ENSG00000233360 LOC101927051 - uncharacterized LOC101927051 ncRNA 202.167-24 chr2 238829065 238829387 + 1.16667 NA Intergenic L1ME1|LINE|L1 18681 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 197.334-8 chr6 134034377 134034599 + 1.16667 NA intron (NM_145176, intron 1 of 4) intron (NM_145176, intron 1 of 4) 18136 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 311.501-2 chr7 4854511 4854788 + 1.16667 NA intron (NM_018059, intron 2 of 14) AluSx1|SINE|Alu 7381 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 202.167-30 chr4 158818083 158818423 + 1.16667 NA intron (NM_001366843, intron 1 of 17) Tigger16a|DNA|TcMar-Tigger 12414 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 279.334-8 chr5 168966932 168967351 + 1.16667 NA intron (NM_003062, intron 4 of 35) L1ME4a|LINE|L1 -46086 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 295.501-4 chr9 73743810 73744436 + 1.16667 NA Intergenic Intergenic 592258 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 277.5-14 chr4 39300027 39300406 + 1.16667 NA intron (NM_001204747, intron 20 of 24) intron (NM_001204747, intron 20 of 24) 66146 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 250.667-2 chr1 108561904 108562263 + 1.16667 NA intron (NM_001010883, intron 1 of 10) MIRb|SINE|MIR 1983 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 191-3 chr1 150009747 150010058 + 1.16667 NA intron (NM_020205, intron 1 of 11) intron (NM_020205, intron 1 of 11) 824 NM_020205 56957 Hs.98322 NM_020205 ENSG00000264522 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 243.334-13 chrX 83845326 83845583 + 1.16667 NA Intergenic L1PA15-16|LINE|L1 -15672 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 241.667-13 chr18 21464619 21464971 + 1.16667 NA intron (NM_001142966, intron 15 of 32) L1MC4|LINE|L1 135909 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 198-16 chr16 79997231 79997494 + 1.16667 NA Intergenic Intergenic 202113 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 255.667 chr1 29174309 29174597 + 1.16667 NA intron (NM_005626, intron 1 of 5) L1ME4a|LINE|L1 7447 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 188.834-10 chr4 159667313 159667490 + 1.16667 NA intron (NR_146278, intron 2 of 2) L1MA4|LINE|L1 110383 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 238.334-5 chr13 19000570 19000823 + 1.16667 NA Intergenic THE1B|LTR|ERVL-MaLR -7563 NR_026852 348021 Hs.314114 NR_026852 ENSG00000232685 LINC00442 - long intergenic non-protein coding RNA 442 ncRNA 247.167-23 chr9 35922699 35923045 + 1.16667 NA Intergenic MER99|DNA|hAT? 13382 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 237.167-18 chr5 13163207 13163721 + 1.16667 NA Intergenic Intergenic -130578 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 215.001 chr14 77117289 77117582 + 1.16667 NA TTS (NM_033426) TTS (NM_033426) 19177 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 188.5-32 chr3 188203091 188203356 + 1.16667 NA intron (NM_001167672, intron 1 of 9) (AT)n|Simple_repeat|Simple_repeat -9710 NM_005578 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 164.167-53 chr8 138759353 138759598 + 1.16667 NA intron (NM_152888, intron 18 of 64) intron (NM_152888, intron 18 of 64) 154566 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 210.667-8 chr11 63447146 63447438 + 1.16667 NA Intergenic LTR16|LTR|ERVL 43875 NM_001146729 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 319.5-19 chr8 57034549 57035041 + 1.16667 NA Intergenic L1ME1|LINE|L1 -40928 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 417.333-8 chr6 54395352 54396051 + 1.16667 NA Intergenic L1MA10|LINE|L1 87260 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 182.167-4 chr12 59960956 59961364 + 1.16667 NA Intergenic L2a|LINE|L2 271790 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 405.667-5 chr21 28516804 28517604 + 1.16667 NA Intergenic MER45R|DNA|hAT-Tip100 -22114 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 336.834-4 chr2 193775337 193775714 + 1.16667 NA Intergenic L1M1|LINE|L1 -568744 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 187-43 chr7 129643396 129643641 + 1.16667 NA intron (NM_001040110, intron 1 of 10) intron (NM_001040110, intron 1 of 10) 13440 NM_001040110 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 163.334-6 chr4 23890110 23890334 + 1.16667 NA promoter-TSS (NM_013261) promoter-TSS (NM_013261) -175 NR_148984 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 301.167-8 chr19 1241474 1241744 + 1.16667 NA promoter-TSS (NM_001687) promoter-TSS (NM_001687) -142 NM_001687 513 Hs.418668 NM_001687 ENSG00000099624 ATP5F1D ATP5D|MC5DN5 ATP synthase F1 subunit delta protein-coding 179.5-2 chr1 95040282 95040538 + 1.16667 NA intron (NM_001305242, intron 2 of 4) intron (NM_001305242, intron 2 of 4) -21186 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 205-25 chr6 89940603 89940904 + 1.16667 NA intron (NM_021813, intron 7 of 8) MER33|DNA|hAT-Charlie 46284 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 174.833 chr1 32004119 32004520 + 1.16667 NA Intergenic Intergenic -9549 NR_073499 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 165.334-4 chr2 120833840 120834189 + 1.16667 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 41733 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 344.333-6 chr2 33599407 33599835 + 1.16667 NA promoter-TSS (NM_001304538) promoter-TSS (NM_001304538) -259 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 184.667-52 chrX 121037901 121038192 + 1.16667 NA Intergenic Tigger2|DNA|TcMar-Tigger -9564 NM_012084 2747 Hs.368538 NM_012084 ENSG00000182890 GLUD2 GDH2|GLUDP1 glutamate dehydrogenase 2 protein-coding 304.167-10 chr9 14257793 14258193 + 1.16667 NA intron (NR_161383, intron 1 of 7) intron (NR_161383, intron 1 of 7) 42271 NM_001369479 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 222.167-22 chr2 55722055 55722429 + 1.16667 NA Intergenic AluJo|SINE|Alu -28398 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 271.001-4 chr5 4828005 4828659 + 1.16667 NA Intergenic Intergenic 54851 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 292.501 chr10 84327078 84327554 + 1.16667 NA Intergenic Intergenic -1273 NM_001351292 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 252.334-5 chr2 150082029 150082354 + 1.16667 NA Intergenic Intergenic 174816 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 190.167-15 chr3 1190658 1191084 + 1.16667 NA intron (NM_001289080, intron 2 of 22) intron (NM_001289080, intron 2 of 22) 97847 NM_014461 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 322.667-12 chr16 12538987 12539354 + 1.16667 NA intron (NM_032167, intron 20 of 20) L1MD3|LINE|L1 -181151 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 272.5-16 chr19 45729923 45730368 + 1.16667 NA intron (NM_001329633, intron 1 of 1) intron (NM_001329633, intron 1 of 1) 751 NM_001080469 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 246-20 chr22 20768255 20768704 + 1.16667 NA intron (NM_058004, intron 19 of 54) L1ME4a|LINE|L1 -5634 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 282.001 chr6 85077396 85077654 + 1.16667 NA Intergenic Intergenic 312661 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 261.167-21 chr8 62632230 62632638 + 1.16667 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -345427 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 331.334-5 chr20 22564367 22564879 + 1.16667 NA non-coding (NR_001558, exon 4 of 4) non-coding (NR_001558, exon 4 of 4) 14019 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 181.667-19 chr17 72391541 72391756 + 1.16667 NA Intergenic Intergenic 48837 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 261.167-7 chr14 63852089 63852445 + 1.16667 NA promoter-TSS (NM_182914) promoter-TSS (NM_182914) -698 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 247.667-20 chr2 99344906 99345272 + 1.16667 NA intron (NM_015904, intron 1 of 23) intron (NM_015904, intron 1 of 23) 7700 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 284.334-2 chr12 112448568 112448922 + 1.16667 NA intron (NM_001330437, intron 2 of 15) L1MC5a|LINE|L1 29798 NM_080601 5781 Hs.506852 NM_002834 ENSG00000179295 PTPN11 BPTP3|CFC|JMML|METCDS|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 protein tyrosine phosphatase non-receptor type 11 protein-coding 199-55 chr8 103995826 103996025 + 1.16667 NA intron (NR_145711, intron 14 of 21) intron (NR_145711, intron 14 of 21) 176705 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 250.167-16 chr6 69281063 69281451 + 1.16667 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 515209 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 191-47 chr8 75255713 75255981 + 1.16667 NA intron (NR_103849, intron 1 of 1) L1MA4A|LINE|L1 22634 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 296 chr1 40398211 40398866 + 1.16667 NA intron (NM_001198980, intron 1 of 9) L1M5|LINE|L1 1738 NM_001198980 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 275.167-24 chr8 79092298 79092787 + 1.16667 NA Intergenic L1ME1|LINE|L1 -239646 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 197.167-19 chr19 35555603 35555775 + 1.16667 NA exon (NM_000704, exon 13 of 22) exon (NM_000704, exon 13 of 22) 7969 NM_000704 495 Hs.36992 NM_000704 ENSG00000105675 ATP4A ATP6A ATPase H+/K+ transporting subunit alpha protein-coding 298.667-14 chr21 30408997 30409501 + 1.16667 NA Intergenic L1PA16|LINE|L1 13218 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 442.667 chr10 61271492 61272032 + 1.16667 NA Intergenic L1M8|LINE|L1 -180877 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 228.5-30 chr6 52313403 52313725 + 1.16667 NA Intergenic Intergenic -28822 NM_001366372 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 277.834-2 chr5 18481348 18481768 + 1.16667 NA Intergenic (AACAAG)n|Simple_repeat|Simple_repeat 674284 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 292.334-5 chr21 23748613 23749026 + 1.16667 NA Intergenic Intergenic -363984 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 188.501-3 chr8 114288860 114289156 + 1.16667 NA Intergenic Intergenic -852069 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 164.834-8 chr9 37000263 37000435 + 1.16667 NA intron (NM_001280554, intron 4 of 8) intron (NM_001280554, intron 4 of 8) 33919 NM_001280553 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 253.167-2 chr10 115889675 115890043 + 1.16667 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 304930 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 280.167-4 chr17 72990800 72991257 + 1.16667 NA intron (NM_001352692, intron 4 of 9) L1ME3Cz|LINE|L1 101660 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 327.334-3 chr14 65556904 65557302 + 1.16667 NA intron (NM_004480, intron 2 of 9) MIRb|SINE|MIR 86001 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 195.667-14 chr14 50141925 50142094 + 1.16667 NA intron (NM_006939, intron 16 of 22) AluSx1|SINE|Alu -25437 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 257.334-4 chr18 69288199 69288435 + 1.16667 NA Intergenic Intergenic -112571 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 296.167-12 chr3 95115974 95116394 + 1.16667 NA Intergenic Intergenic 177921 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 267.167-4 chr14 52730826 52731225 + 1.16667 NA intron (NM_001130701, intron 2 of 11) intron (NM_001130701, intron 2 of 11) 859 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 199-27 chr2 194165522 194165748 + 1.16667 NA Intergenic MER97a|DNA|hAT-Tip100 -178634 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 231.334-3 chr4 109026418 109026697 + 1.16667 NA intron (NM_198721, intron 4 of 36) intron (NM_198721, intron 4 of 36) -263504 NM_001146590 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 185.167-15 chr2 55896086 55896460 + 1.16667 NA intron (NM_001039349, intron 4 of 10) intron (NM_001039349, intron 4 of 10) 27509 NM_001039348 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 194.167-26 chr4 103317614 103317944 + 1.16667 NA Intergenic L1M4c|LINE|L1 -107263 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 390-12 chr9 133994161 133994799 + 1.16667 NA Intergenic Intergenic -2156 NM_001134398 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 221.167 chr1 64123349 64123606 + 1.16667 NA intron (NM_005012, intron 4 of 8) MIRc|SINE|MIR -9686 NR_110665 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 233.5-33 chr9 131305111 131305429 + 1.16667 NA intron (NM_032728, intron 1 of 1) AluJr4|SINE|Alu 15547 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 181.167-18 chr15 101212958 101213193 + 1.16667 NA intron (NM_014918, intron 2 of 2) L1MEg|LINE|L1 38973 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 303.333-3 chr11 12651352 12651967 + 1.16667 NA Intergenic L1MC4|LINE|L1 -22762 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 413.334-2 chr1 160192749 160193843 + 1.16667 NA intron (NM_001231, intron 2 of 10) intron (NM_001231, intron 2 of 10) 2721 NM_001231 844 Hs.632476 NM_001231 ENSG00000143318 CASQ1 CASQ|PDIB1|VMCQA calsequestrin 1 protein-coding 194-18 chr16 69136836 69137273 + 1.16667 NA intron (NM_001318391, intron 3 of 16) intron (NM_001318391, intron 3 of 16) 4405 NM_032830 84916 Hs.461113 NM_032830 ENSG00000141076 UTP4 CIRH1A|CIRHIN|NAIC|TEX292 UTP4 small subunit processome component protein-coding 221.334-12 chr5 38994452 38994739 + 1.16667 NA intron (NM_001285439, intron 6 of 38) intron (NM_001285439, intron 6 of 38) 79804 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 204.167-5 chr12 267350 267643 + 1.16667 NA Intergenic Intergenic -4623 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 322.334-2 chr12 79526076 79526363 + 1.16667 NA Intergenic Intergenic 106962 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 184.5-3 chr1 103412550 103412868 + 1.16667 NA Intergenic Intergenic 112802 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 210.5-4 chr10 61682305 61682565 + 1.16667 NA intron (NM_173554, intron 2 of 6) intron (NM_173554, intron 2 of 6) 19474 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 224.167-19 chr2 45111081 45111434 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -101805 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 189.167-35 chr8 24217508 24217754 + 1.16667 NA Intergenic L1PA16|LINE|L1 -76409 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 234.167-7 chr10 62571772 62572115 + 1.16667 NA intron (NM_199452, intron 1 of 6) L1MC5a|LINE|L1 51495 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 204.834-4 chr15 63071616 63071858 + 1.16667 NA 3' UTR (NM_001018007, exon 9 of 9) 3' UTR (NM_001018007, exon 9 of 9) -22350 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 200.833-18 chr16 76597693 76598017 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -37143 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 212-9 chr10 32732063 32732458 + 1.16667 NA intron (NM_001321115, intron 29 of 43) intron (NM_001321115, intron 29 of 43) 169212 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 429-6 chr14 104767969 104768869 + 1.16667 NA TTS (NM_005163) TTS (NM_005163) 15272 NM_006427 10572 Hs.112058 NM_006427 ENSG00000184990 SIVA1 CD27BP|SIVA|Siva-1|Siva-2 SIVA1 apoptosis inducing factor protein-coding 370.667-2 chr14 61597805 61598341 + 1.16667 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -27420 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 205.5-29 chr5 84287988 84288221 + 1.16667 NA intron (NM_001278642, intron 1 of 9) L2-1_AMi|LINE|L2 96763 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 214.5-34 chr8 70113979 70114258 + 1.16667 NA intron (NM_001321711, intron 21 of 21) MER90|LTR|ERV1 -42866 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 324.833 chr1 203480646 203481006 + 1.16667 NA intron (NM_002725, intron 1 of 2) intron (NM_002725, intron 1 of 2) 5020 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 286.501-3 chr3 110276254 110276553 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 673575 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 189.167-3 chr10 16553256 16553500 + 1.16667 NA Intergenic Intergenic -31499 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 221.833-8 chr15 86915711 86916052 + 1.16667 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -16999 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 247.167-11 chr18 62759178 62759485 + 1.16667 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 43790 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 264.5-23 chr7 123914199 123914563 + 1.16667 NA Intergenic L2c|LINE|L2 -10860 NM_003117 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 432.167-4 chr19 4204616 4205343 + 1.16667 NA intron (NM_133475, intron 7 of 21) AluSc8|SINE|Alu 21625 NM_133475 170961 Hs.197872 NM_133475 ENSG00000089847 ANKRD24 - ankyrin repeat domain 24 protein-coding 225-38 chr8 84170432 84170825 + 1.16667 NA Intergenic L1PA17|LINE|L1 -12159 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 230.834-6 chr4 112572389 112572647 + 1.16667 NA intron (NM_018392, intron 16 of 27) L1PB1|LINE|L1 -56338 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 328.833-5 chr14 78933707 78934210 + 1.16667 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -266024 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 221.833-11 chr17 62779376 62779729 + 1.16667 NA intron (NM_001288780, intron 4 of 10) intron (NM_001288780, intron 4 of 10) 27088 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 256-9 chr13 79654090 79654502 + 1.16667 NA Intergenic MIR|SINE|MIR 87569 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 180.667-28 chr2 222118700 222119105 + 1.16667 NA Intergenic Intergenic -179245 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 214 chr1 20780429 20780870 + 1.16667 NA intron (NM_016287, intron 1 of 12) intron (NM_016287, intron 1 of 12) 6039 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 367.834 chr10 81950997 81951474 + 1.16667 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 73548 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 207.667-22 chr2 74549754 74550056 + 1.16667 NA promoter-TSS (NM_001289165) promoter-TSS (NM_001289165) -379 NM_001289165 84695 Hs.469045 NM_032603 ENSG00000115318 LOXL3 LOXL lysyl oxidase like 3 protein-coding 220.833-5 chr11 112004042 112004395 + 1.16667 NA intron (NM_001037954, intron 17 of 19) L1MCc|LINE|L1 -20596 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 327.501-3 chr3 180086772 180087139 + 1.16667 NA Intergenic L1MCb|LINE|L1 -50018 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 258-30 chr6 108113398 108113696 + 1.16667 NA Intergenic Intergenic -10086 NR_145458 100287366 Hs.221513 NR_145458 ENSG00000225174 OSTM1-AS1 - OSTM1 antisense RNA 1 ncRNA 190.667-31 chr20 35732778 35733100 + 1.16667 NA intron (NR_040722, intron 4 of 17) intron (NR_040722, intron 4 of 17) 9321 NM_004902 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 285.501 chr11 60906511 60906775 + 1.16667 NA promoter-TSS (NM_014502) promoter-TSS (NM_014502) -58 NM_014502 27339 Hs.502705 NM_014502 ENSG00000110107 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 261.834-3 chr17 58981647 58981928 + 1.16667 NA TTS (NM_001320989) TTS (NM_001320989) 125093 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 191.334-6 chr18 63580119 63580389 + 1.16667 NA Intergenic Tigger2|DNA|TcMar-Tigger -7046 NM_001307923 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 291.334-3 chr17 35683986 35684302 + 1.16667 NA intron (NM_001030006, intron 18 of 21) L1MEd|LINE|L1 -47495 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 263.501 chr14 27147330 27147608 + 1.16667 NA Intergenic L1PA16|LINE|L1 238827 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 181.334-3 chr10 66828583 66828800 + 1.16667 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -97345 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 244-29 chr5 173618711 173619032 + 1.16667 NA Intergenic Intergenic -2208 NM_001159651 91272 Hs.425091 NM_138369 ENSG00000145919 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 243.667-37 chr8 57616224 57616577 + 1.16667 NA Intergenic Charlie2b|DNA|hAT-Charlie -129749 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 376.667-9 chr6 130629843 130630424 + 1.16667 NA Intergenic Intergenic 193016 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 229.501 chr1 171488851 171489081 + 1.16667 NA intron (NM_015172, intron 1 of 33) intron (NM_015172, intron 1 of 33) 3436 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 172.834 chr13 48893545 48893763 + 1.16667 NA Intergenic Intergenic -82258 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 171.5-18 chr15 62107356 62107604 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 40503 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 419.833 chr13 105410309 105410988 + 1.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie -55219 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 300.167-7 chr2 43759390 43759720 + 1.16667 NA intron (NM_172069, intron 27 of 29) intron (NM_172069, intron 27 of 29) -14484 NM_015522 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 313-13 chr8 127519031 127519596 + 1.16667 NA Intergenic L1MD1|LINE|L1 -37174 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 239.5-8 chr14 50754634 50754934 + 1.16667 NA exon (NM_020921, exon 19 of 31) exon (NM_020921, exon 19 of 31) -67013 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 251.334-5 chr11 114292029 114292484 + 1.16667 NA Intergenic Intergenic -3557 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 258 chr1 12075675 12076016 + 1.16667 NA intron (NM_001281430, intron 1 of 13) LTR19A|LTR|ERV1 12468 NM_001281430 943 Hs.1314 NM_001243 ENSG00000120949 TNFRSF8 CD30|D1S166E|Ki-1 TNF receptor superfamily member 8 protein-coding 280.834-3 chr2 142940804 142941132 + 1.16667 NA intron (NM_001199241, intron 5 of 14) MER21C|LTR|ERVL 63304 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 210.334-2 chr1 91743470 91743742 + 1.16667 NA intron (NR_036634, intron 5 of 17) L2a|LINE|L2 142545 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 202.333-27 chr3 178868356 178868649 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -8097 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 172.5-53 chr8 59360750 59360954 + 1.16667 NA Intergenic L1ME3A|LINE|L1 241642 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 172.833-9 chr12 98755799 98756027 + 1.16667 NA intron (NM_001352221, intron 8 of 9) MLT1G|LTR|ERVL-MaLR 110613 NM_181869 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 223.167-20 chr6 83512043 83512239 + 1.16667 NA promoter-TSS (NM_001170423) promoter-TSS (NM_001170423) -393 NM_001170423 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 310-4 chr11 27079955 27080407 + 1.16667 NA intron (NR_125767, intron 3 of 4) MIRb|SINE|MIR 39366 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 347.667-13 chr6 55327262 55327767 + 1.16667 NA promoter-TSS (NM_207410) promoter-TSS (NM_207410) 45 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 317.334 chr1 29567945 29568304 + 1.16667 NA Intergenic LTR49-int|LTR|ERV1 -218010 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 238.167-2 chr1 111409191 111409731 + 1.16667 NA Intergenic L1PA14|LINE|L1 18274 NM_002557 5016 Hs.1154 NM_002557 ENSG00000085465 OVGP1 CHIT5|EGP|MUC9|OGP oviductal glycoprotein 1 protein-coding 210.834-2 chr10 104998673 104998992 + 1.16667 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -332616 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 214.834-9 chr5 8422281 8422603 + 1.16667 NA intron (NR_039984, intron 2 of 5) L1MC4|LINE|L1 35122 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 278-26 chr7 69865579 69865871 + 1.16667 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 267250 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 227-16 chr2 72115816 72116295 + 1.16667 NA Intergenic Plat_L3|LINE|CR1 31807 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 193.5-46 chr7 22141131 22141355 + 1.16667 NA intron (NM_001367601, intron 10 of 13) L1M5|LINE|L1 52502 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 309.667-4 chr12 23314743 23315040 + 1.16667 NA Intergenic L1ME1|LINE|L1 139255 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 306.167 chr1 229064049 229064340 + 1.16667 NA Intergenic Intergenic 110607 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 163.333-10 chr11 55706818 55707131 + 1.16667 NA Intergenic Intergenic 41807 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 404.5-4 chr11 75249160 75249698 + 1.16667 NA Intergenic MIR|SINE|MIR 8655 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 263.5-3 chr1 191849084 191849511 + 1.16667 NA Intergenic Intergenic -309165 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 181.5-53 chr8 28400841 28401313 + 1.16667 NA Intergenic Intergenic -14617 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 319.001-3 chr20 60444903 60445213 + 1.16667 NA Intergenic Intergenic 27918 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 294.667-25 chr8 94704211 94704470 + 1.16667 NA intron (NM_017697, intron 15 of 15) AluJr|SINE|Alu -15560 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 282.834-5 chr2 63217220 63217586 + 1.16667 NA intron (NR_148705, intron 13 of 16) MER58B|DNA|hAT-Charlie -97861 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 312.667-3 chr1 218498496 218498930 + 1.16667 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) -11382 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 214.667-40 chr6 87379371 87379571 + 1.16667 NA Intergenic Intergenic -17653 NR_026784 63914 Hs.645177 NM_022084 ENSG00000111850 LINC01590 C6orf164|dJ102H19.4 long intergenic non-protein coding RNA 1590 ncRNA 311.333-22 chr7 124788922 124789460 + 1.16667 NA intron (NM_001024603, intron 1 of 3) intron (NM_001024603, intron 1 of 3) 1619 NM_001024603 154872 Hs.444163 NM_001024603 ENSG00000275356 C7orf77 - chromosome 7 open reading frame 77 protein-coding 214.834-8 chr4 66825472 66825737 + 1.16667 NA Intergenic L1PB1|LINE|L1 548780 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 169.334-3 chr15 63552856 63553010 + 1.16667 NA intron (NM_006537, intron 3 of 14) intron (NM_006537, intron 3 of 14) -44454 NM_203373 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 332.001 chr1 220284028 220284352 + 1.16667 NA Intergenic Intergenic -11737 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 168.167-23 chr3 163490375 163490680 + 1.16667 NA Intergenic LTR28|LTR|ERV1 -187226 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 201-32 chr4 55478277 55478594 + 1.16667 NA intron (NM_004898, intron 6 of 22) L2c|LINE|L2 67497 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 206.5-23 chr17 44586171 44586527 + 1.16667 NA Intergenic AluSx|SINE|Alu 28865 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 310.667-21 chrX 80648007 80648481 + 1.16667 NA Intergenic Intergenic 161633 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 305.167-10 chr4 103875761 103876074 + 1.16667 NA Intergenic L1M5|LINE|L1 -155932 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 233.334-4 chr5 24118730 24119036 + 1.16667 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 167535 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 256.667-3 chr10 31099623 31099888 + 1.16667 NA Intergenic Intergenic -67818 NM_001143771 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 313.5-21 chr5 95463021 95463513 + 1.16667 NA TTS (NM_014639) TTS (NM_014639) 71901 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 212.667-2 chr10 35256008 35256297 + 1.16667 NA intron (NM_181698, intron 3 of 11) L1M4c|LINE|L1 9127 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 206.667-41 chr5 19861938 19862224 + 1.16667 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 24191 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 373.667-6 chr9 130781102 130781574 + 1.16667 NA intron (NM_007313, intron 1 of 10) intron (NM_007313, intron 1 of 10) -53916 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 314.334-7 chr6 87802977 87803299 + 1.16667 NA intron (NR_110869, intron 2 of 4) intron (NR_110869, intron 2 of 4) 18278 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 223.667-46 chr8 10002377 10002673 + 1.16667 NA Intergenic LTR32|LTR|ERVL -51767 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 357.834-9 chr8 46014451 46014818 + 1.16667 NA Intergenic MER11C|LTR|ERVK 603009 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 172.167 chr1 99599529 99599805 + 1.16667 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -46446 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 433.834-4 chr3 150286481 150287061 + 1.16667 NA intron (NR_110186, intron 2 of 3) intron (NR_110186, intron 2 of 3) 36976 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 334-6 chr18 50747233 50747713 + 1.16667 NA Intergenic Intergenic 72543 NM_001127175 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 204.667-4 chr1 218717840 218718130 + 1.16667 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 200526 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 247.167-19 chr6 26097543 26097966 + 1.16667 NA 3' UTR (NM_139003, exon 5 of 5) 3' UTR (NM_139003, exon 5 of 5) -6194 NM_003542 8364 Hs.46423 NM_003542 ENSG00000197061 HIST1H4C H4/g|H4FG|dJ221C16.1 histone cluster 1 H4 family member c protein-coding 178-32 chr4 39795686 39795867 + 1.16667 NA Intergenic FRAM|SINE|Alu 97640 NM_001312648 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 178.334-6 chr4 136683496 136684079 + 1.16667 NA Intergenic Intergenic -509969 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 316.833-2 chr12 30916990 30917522 + 1.16667 NA Intergenic GA-rich|Low_complexity|Low_complexity -9492 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 356.834-4 chr6 140113966 140114376 + 1.16667 NA Intergenic Arthur1|DNA|hAT-Tip100 -91081 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 326.833-7 chr14 21910638 21911191 + 1.16667 NA Intergenic Intergenic -239897 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 179.834-8 chr7 134750319 134750492 + 1.16667 NA Intergenic Intergenic -29229 NM_033157 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 183.167-11 chr14 60312510 60312776 + 1.16667 NA Intergenic Intergenic -10553 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 187.833-25 chr6 101114801 101115112 + 1.16667 NA Intergenic Intergenic -233584 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 277.334-7 chr7 108158633 108159084 + 1.16667 NA intron (NR_163871, intron 28 of 29) intron (NR_163871, intron 28 of 29) -28497 NM_001318047 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 170-13 chr11 111236871 111237090 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -8745 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 271.5-13 chr16 28973701 28974069 + 1.16667 NA promoter-TSS (NM_001142448) promoter-TSS (NM_001142448) -893 NM_032038 83985 Hs.617449 NM_032038 ENSG00000169682 SPNS1 HSpin1|LAT|PP2030|SLC62A1|SPIN1|SPINL|nrs sphingolipid transporter 1 (putative) protein-coding 191-20 chr16 25047897 25048155 + 1.16667 NA Intergenic AluJo|SINE|Alu 16285 NR_038379 554206 Hs.552959 NR_038379 ENSG00000262587 LOC554206 - leucine carboxyl methyltransferase 1 pseudogene pseudo 246.167-26 chr3 99136474 99136733 + 1.16667 NA Intergenic L1MEd|LINE|L1 -234908 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 465.168-2 chr8 127756342 127756780 + 1.16667 NA Intergenic AluSx1|SINE|Alu 20330 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 249.167-31 chrX 69457880 69458178 + 1.16667 NA Intergenic MER74A|LTR|ERVL -47206 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 204.834-6 chr2 23830336 23830624 + 1.16667 NA intron (NR_125717, intron 14 of 28) intron (NR_125717, intron 14 of 28) 96643 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 253.667-17 chr16 17586152 17586543 + 1.16667 NA Intergenic Intergenic -115387 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 226.167-8 chr14 51145587 51145809 + 1.16667 NA Intergenic Intergenic -49994 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 399.167-8 chr6 44338450 44338948 + 1.16667 NA Intergenic Intergenic -3961 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 189.167-30 chr5 29312749 29313193 + 1.16667 NA Intergenic Intergenic 83005 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 218.834-2 chr12 32127297 32127566 + 1.16667 NA intron (NR_148725, intron 1 of 9) L1M5|LINE|L1 20584 NM_001354187 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 320.501-2 chr16 76789938 76790327 + 1.16667 NA Intergenic Intergenic -78804 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 188.334-10 chr8 28998665 28998887 + 1.16667 NA intron (NM_001324384, intron 4 of 10) L1MB7|LINE|L1 107462 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 264.5 chr1 198833447 198833749 + 1.16667 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) 25384 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 242.167-2 chr10 5680434 5680830 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -4206 NR_135800 54906 Hs.610717 NM_017782 ENSG00000108021 TASOR2 C10orf18|FAM208B|bA318E3.2 transcription activation suppressor family member 2 protein-coding 272.833-13 chr3 89098246 89098658 + 1.16667 NA Intergenic Intergenic -9169 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 180.167-17 chr5 121613830 121614041 + 1.16667 NA Intergenic Intergenic -237947 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 235.5-12 chr22 28741783 28742017 + 1.16667 NA promoter-TSS (NM_001005735) promoter-TSS (NM_001005735) -66 NM_145862 11200 Hs.291363 NM_007194 ENSG00000183765 CHEK2 CDS1|CHK2|HuCds1|LFS2|PP1425|RAD53|hCds1 checkpoint kinase 2 protein-coding 378.167-6 chr4 143084531 143085206 + 1.16667 NA Intergenic L2c|LINE|L2 99993 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 205.833-9 chr14 44700377 44700650 + 1.16667 NA Intergenic Intergenic 98613 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 242.167-14 chr2 29771952 29772349 + 1.16667 NA intron (NM_004304, intron 1 of 28) HAL1|LINE|L1 149436 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 195.333-32 chr9 118958026 118958434 + 1.16667 NA Intergenic L1PA16|LINE|L1 278559 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 179.5-13 chr12 104110134 104110524 + 1.16667 NA Intergenic L1ME3D|LINE|L1 27881 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 195.5-30 chr5 26534231 26534434 + 1.16667 NA Intergenic Intergenic 504254 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 282.834-9 chr4 156614925 156615224 + 1.16667 NA Intergenic Intergenic 356725 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 337.667-5 chr15 71295471 71296107 + 1.16667 NA intron (NM_024817, intron 5 of 16) L1MB8|LINE|L1 -106730 NR_120351 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 186.5-9 chr15 58670778 58671139 + 1.16667 NA intron (NM_001320570, intron 4 of 14) MIR3|SINE|MIR 22649 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 244-18 chr20 6760247 6760625 + 1.16667 NA Intergenic Intergenic -7250 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 185.333-46 chr7 3971491 3971766 + 1.16667 NA intron (NM_152744, intron 12 of 44) intron (NM_152744, intron 12 of 44) -158057 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 258.833-3 chr14 101857773 101858114 + 1.16667 NA intron (NM_001161725, intron 4 of 15) intron (NM_001161725, intron 4 of 15) 48080 NM_001352912 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 299.334-5 chr7 12047700 12048146 + 1.16667 NA Intergenic Intergenic -163371 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 215.667-4 chr10 77390235 77390562 + 1.16667 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 39526 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 338.167-8 chr3 170865752 170866323 + 1.16667 NA non-coding (NR_135259, exon 4 of 4) non-coding (NR_135259, exon 4 of 4) 4158 NR_135259 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 272-6 chr1 182628594 182629097 + 1.16667 NA Intergenic Intergenic 13705 NR_036490 284648 Hs.253475 NR_036490 ENSG00000261504 LINC01686 - long intergenic non-protein coding RNA 1686 ncRNA 232-38 chr6 72753872 72754134 + 1.16667 NA intron (NM_001160132, intron 1 of 13) L1MD|LINE|L1 123508 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 252.167-6 chr14 64264951 64265323 + 1.16667 NA intron (NR_073496, intron 4 of 7) intron (NR_073496, intron 4 of 7) 17938 NM_001271877 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 231.5-5 chr11 77010797 77011216 + 1.16667 NA intron (NM_001300953, intron 6 of 9) HAL1|LINE|L1 -23392 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 205.5-11 chr12 308550 308989 + 1.16667 NA intron (NM_001042603, intron 22 of 27) intron (NM_001042603, intron 22 of 27) -45896 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 166.5-39 chr7 44082584 44082757 + 1.16667 NA promoter-TSS (NR_156113) promoter-TSS (NR_156113) -130 NR_156113 27434 Hs.596982 NM_013284 ENSG00000122678 POLM Pol Mu|Tdt-N DNA polymerase mu protein-coding 171.667-13 chr12 46282795 46283014 + 1.16667 NA Intergenic L1MA4|LINE|L1 -13861 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 256-21 chr5 5931148 5931514 + 1.16667 NA Intergenic Intergenic 405961 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 284.501-3 chr5 28406306 28406620 + 1.16667 NA Intergenic Intergenic -118798 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 198.001 chr17 54136843 54137262 + 1.16667 NA Intergenic HERV16-int|LTR|ERVL 314125 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 246.167-29 chr5 39707218 39707524 + 1.16667 NA Intergenic Intergenic 186940 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 182.167-7 chr14 81205665 81205919 + 1.16667 NA intron (NM_015859, intron 2 of 8) intron (NM_015859, intron 2 of 8) -2958 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 244.667-20 chr3 9730825 9731308 + 1.16667 NA promoter-TSS (NM_001319050) promoter-TSS (NM_001319050) -663 NM_001319049 7862 Hs.1004 NM_004634 ENSG00000156983 BRPF1 BR140|IDDDFP bromodomain and PHD finger containing 1 protein-coding 227.334-7 chr11 114424257 114424551 + 1.16667 NA Intergenic L1M1|LINE|L1 -15063 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 165.167-26 chr3 99846425 99846616 + 1.16667 NA intron (NM_001282794, intron 2 of 2) intron (NM_001282794, intron 2 of 2) -22655 NR_110821 101929357 Hs.741615 NR_110821 HP09053 - uncharacterized LOC101929357 ncRNA 203.5-10 chr12 1134217 1134688 + 1.16667 NA intron (NR_027948, intron 6 of 19) AluJr|SINE|Alu 106704 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 225.5-13 chr2 65299473 65299727 + 1.16667 NA Intergenic MLT1J2|LTR|ERVL-MaLR 67178 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 277.667-15 chr2 56582972 56583400 + 1.16667 NA Intergenic Intergenic -397416 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 532.168 chr14 75230194 75230866 + 1.16667 NA Intergenic Intergenic -48298 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 207.834-5 chr22 28370299 28370592 + 1.16667 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -89424 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 260.167-9 chr16 12834240 12834626 + 1.16667 NA Intergenic Intergenic -30546 NM_001099455 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 325.334-5 chr14 54459173 54459696 + 1.16667 NA Intergenic THE1D-int|LTR|ERVL-MaLR -18060 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 305.334-11 chr3 108051857 108052141 + 1.16667 NA intron (NM_198793, intron 7 of 8) (ATAA)n|Simple_repeat|Simple_repeat 39089 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 279.667-11 chr19 40523332 40523695 + 1.16667 NA exon (NM_020971, exon 17 of 36) exon (NM_020971, exon 17 of 36) -6978 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 222.333-35 chr9 27471770 27472017 + 1.16667 NA intron (NM_024761, intron 1 of 3) MIRb|SINE|MIR -52421 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 307.167-3 chr1 191785882 191786447 + 1.16667 NA Intergenic Intergenic -372298 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 164.667-20 chr16 22321153 22321429 + 1.16667 NA intron (NR_047581, intron 13 of 20) intron (NR_047581, intron 13 of 20) 23882 NM_001258036 55718 Hs.460298 NM_018119 ENSG00000058600 POLR3E RPC5|SIN RNA polymerase III subunit E protein-coding 260.334-10 chr7 5664060 5664499 + 1.16667 NA intron (NR_046834, intron 2 of 2) intron (NR_046834, intron 2 of 2) 16182 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 166.333-33 chr2 165310188 165310508 + 1.16667 NA exon (NM_001371247, exon 7 of 27) exon (NM_001371247, exon 7 of 27) 16293 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 223.501 chr17 47604374 47604586 + 1.16667 NA intron (NM_001330257, intron 17 of 23) intron (NM_001330257, intron 17 of 23) -45439 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 253.5-10 chr13 42931800 42932236 + 1.16667 NA intron (NM_033255, intron 6 of 10) AluJr|SINE|Alu -59274 NR_126389 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 227.167-12 chr18 59631564 59631945 + 1.16667 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 65669 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 307.834 chr1 111696496 111696929 + 1.16667 NA intron (NM_001370216, intron 3 of 7) intron (NM_001370216, intron 3 of 7) 31918 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 175.667-18 chr14 47998055 47998366 + 1.16667 NA Intergenic Intergenic -203196 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 198.167-8 chr12 51218304 51218526 + 1.16667 NA promoter-TSS (NM_001351088) promoter-TSS (NM_001351088) -353 NR_147047 5463 Hs.555886 NM_002702 ENSG00000184271 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding 219.5-18 chr20 44334755 44335115 + 1.16667 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -2223 NM_178491 140902 Hs.580807 NM_178491 ENSG00000101074 R3HDML dJ881L22.3 R3H domain containing like protein-coding 269.001-5 chr9 99771128 99771501 + 1.16667 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 48575 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 218.167-18 chr4 48899 49154 + 1.16667 NA Intergenic Intergenic -4259 NM_001286052 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 265.667-16 chr3 45608023 45608369 + 1.16667 NA intron (NM_014240, intron 1 of 7) MIRc|SINE|MIR 13445 NM_014240 8994 Hs.193370 NM_014240 ENSG00000144791 LIMD1 - LIM domains containing 1 protein-coding 220.167-27 chr6 154729767 154729984 + 1.16667 NA Intergenic Intergenic -3503 NM_001286189 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 178.667-31 chr3 100235820 100236140 + 1.16667 NA Intergenic Intergenic -25012 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 363.001-4 chr6 147477220 147477621 + 1.16667 NA Intergenic L2a|LINE|L2 -31270 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 203.667-62 chrX 93653714 93654066 + 1.16667 NA Intergenic L1ME4a|LINE|L1 19688 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 239.167-8 chr11 87301077 87301337 + 1.16667 NA intron (NR_033149, intron 6 of 13) intron (NR_033149, intron 6 of 13) 263273 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 238.167-30 chr9 36400462 36400968 + 1.16667 NA promoter-TSS (NM_022781) promoter-TSS (NM_022781) 208 NM_194332 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 193.167-19 chr21 31200962 31201257 + 1.16667 NA intron (NM_001353686, intron 12 of 27) intron (NM_001353686, intron 12 of 27) -40169 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 273.501 chr3 170216699 170216989 + 1.16667 NA Intergenic L1MB7|LINE|L1 -5580 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 286-18 chr5 16552970 16553362 + 1.16667 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -44168 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 178.333-14 chr15 51403071 51403477 + 1.16667 NA intron (NM_001330297, intron 9 of 9) intron (NM_001330297, intron 9 of 9) 26028 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 219.167-18 chr7 49939458 49939650 + 1.16667 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 153692 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 240.001 chr1 32028806 32029064 + 1.16667 NA intron (NR_073498, intron 1 of 8) intron (NR_073498, intron 1 of 8) 15067 NR_073498 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 311.5-18 chr5 159829566 159829964 + 1.16667 NA intron (NR_109891, intron 2 of 2) MLT1N2|LTR|ERVL-MaLR 41619 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 302.5-7 chr11 40570331 40570729 + 1.16667 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -277400 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 412.334-6 chr21 23956625 23957286 + 1.16667 NA Intergenic Tigger7|DNA|TcMar-Tigger 364422 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 372.501-2 chr2 138922816 138923195 + 1.16667 NA Intergenic Intergenic 25681 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 224.667-24 chr2 97999161 97999443 + 1.16667 NA Intergenic L2|LINE|L2 -3354 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 196.334-9 chr2 175289277 175289559 + 1.16667 NA Intergenic Intergenic -107708 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 247-34 chr8 118031568 118031886 + 1.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 80092 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 180.167-19 chr5 161653402 161653638 + 1.16667 NA Intergenic HAL1M8|LINE|L1 -32201 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 312.667-7 chr13 50805789 50806123 + 1.16667 NA intron (NM_198989, intron 1 of 1) MER58A|DNA|hAT-Charlie -1899 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 249.667-11 chr14 77151581 77151959 + 1.16667 NA Intergenic Intergenic -9979 NM_174976 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 264.334-4 chr16 4944717 4945134 + 1.16667 NA Intergenic Intergenic -7777 NM_002705 5493 Hs.192233 NM_002705 ENSG00000118898 PPL - periplakin protein-coding 165.5-42 chr7 151116126 151116366 + 1.16667 NA intron (NM_001308305, intron 1 of 8) intron (NM_001308305, intron 1 of 8) 1608 NM_001308305 116988 Hs.647075 NM_031946 ENSG00000133612 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 166-61 chr6 135306651 135306803 + 1.16667 NA intron (NM_017651, intron 25 of 27) intron (NM_017651, intron 25 of 27) 67567 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 307.667-11 chr2 27663653 27663932 + 1.16667 NA promoter-TSS (NM_001282729) promoter-TSS (NM_001282729) 48 NM_001282731 9913 Hs.6232 NM_014860 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H SPT7 like, STAGA complex gamma subunit protein-coding 426.167-10 chr6 153312579 153313251 + 1.16667 NA Intergenic Intergenic -181633 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 189.5-8 chr13 30313849 30314207 + 1.16667 NA Intergenic Intergenic -6477 NM_032116 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 306-15 chr5 78799473 78799863 + 1.16667 NA intron (NM_000046, intron 6 of 7) intron (NM_000046, intron 6 of 7) -150896 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 246.834-2 chr17 50842093 50842355 + 1.16667 NA 3' UTR (NM_001330341, exon 2 of 2) 3' UTR (NM_001330341, exon 2 of 2) 6638 NM_175575 124857 Hs.211475 NM_175575 ENSG00000173714 WFIKKN2 GASP-1|WFDC20B|WFIKKNRP|hGASP-1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein-coding 299.167-18 chr4 158578399 158578757 + 1.16667 NA intron (NR_045580, intron 2 of 17) intron (NR_045580, intron 2 of 17) 56696 NR_045583 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 365.668-2 chr7 99874851 99875232 + 1.16667 NA Intergenic Intergenic 1992 NM_001005276 81392 Hs.647523 NM_001005276 ENSG00000244623 OR2AE1 OR2AE2 olfactory receptor family 2 subfamily AE member 1 protein-coding 217-27 chr5 7751075 7751320 + 1.16667 NA intron (NM_020546, intron 15 of 24) L1MEd|LINE|L1 99936 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 286.167-3 chr1 229898333 229898801 + 1.16667 NA Intergenic Intergenic -4659 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 235.501-2 chr19 33717305 33717805 + 1.16667 NA intron (NM_001127895, intron 3 of 4) MER41E|LTR|ERV1 33027 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 271.167-19 chr9 21026713 21027083 + 1.16667 NA intron (NM_001321903, intron 2 of 8) intron (NM_001321903, intron 2 of 8) 4742 NM_001321883 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 199.5-43 chr8 42207456 42207789 + 1.16667 NA promoter-TSS (NM_033011) promoter-TSS (NM_033011) -57 NM_001319189 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 278-22 chr5 64964884 64965258 + 1.16667 NA intron (NM_005869, intron 11 of 13) AluSq2|SINE|Alu 196141 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 188.667-39 chr5 51015455 51015713 + 1.16667 NA Intergenic MamRep4096|DNA|hAT-Tip100 -45397 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 334.334 chr1 31701115 31701537 + 1.16667 NA intron (NM_001856, intron 2 of 70) intron (NM_001856, intron 2 of 70) 2691 NM_001856 1307 Hs.368921 NM_001856 ENSG00000084636 COL16A1 447AA|FP1572 collagen type XVI alpha 1 chain protein-coding 204-42 chr8 83528187 83528377 + 1.16667 NA Intergenic Intergenic 124524 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 165.167-47 chr8 100897367 100897621 + 1.16667 NA Intergenic L1MB5|LINE|L1 53077 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 168.667-38 chr5 31823671 31823905 + 1.16667 NA intron (NM_178140, intron 2 of 24) MER34|LTR|ERV1 112371 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 251.334-15 chr7 34119466 34119833 + 1.16667 NA intron (NM_133468, intron 14 of 15) L1MEi|LINE|L1 214110 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 272.834-4 chr11 32824483 32825067 + 1.16667 NA Intergenic Intergenic -5152 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 204-35 chr6 44667406 44668046 + 1.16667 NA Intergenic Intergenic -115845 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 197.667-32 chr2 171554515 171554902 + 1.16667 NA exon (NM_024843, exon 4 of 4) exon (NM_024843, exon 4 of 4) 32234 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 174-12 chr12 22687492 22687659 + 1.16667 NA 3' UTR (NM_018638, exon 8 of 8) 3' UTR (NM_018638, exon 8 of 8) 62404 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 267.001 chr16 81560994 81561227 + 1.16667 NA intron (NM_030629, intron 1 of 20) AluSz|SINE|Alu 27208 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 247.667-10 chr14 85415228 85415560 + 1.16667 NA intron (NR_102737, intron 2 of 2) L2a|LINE|L2 21479 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 262.5-2 chr1 244509462 244509865 + 1.16667 NA intron (NM_001130957, intron 7 of 21) L1MA4|LINE|L1 48292 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 193.5-32 chr22 30228514 30228779 + 1.16667 NA Intergenic Intergenic -10548 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 225.667-3 chr1 114940853 114941315 + 1.16667 NA intron (NM_001282542, intron 23 of 30) MER8|DNA|TcMar-Tigger 86221 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 321.167-5 chr12 28843881 28844266 + 1.16667 NA Intergenic L1M4|LINE|L1 -305205 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 195.167-29 chr20 49118402 49118702 + 1.16667 NA intron (NM_004602, intron 9 of 13) intron (NM_004602, intron 9 of 13) 69818 NM_017452 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 305.334-10 chr2 121128583 121129368 + 1.16667 NA Intergenic Intergenic 156227 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 178.5-27 chr3 31602923 31603176 + 1.16667 NA intron (NM_178862, intron 5 of 15) intron (NM_178862, intron 5 of 15) 70124 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 219.167-8 chr15 60643816 60644081 + 1.16667 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -16418 NM_134260 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 166.333 chr1 49809613 49809808 + 1.16667 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 214244 NM_032785 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 235.834-3 chr13 89845356 89845615 + 1.16667 NA Intergenic Intergenic 274232 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 260.001-2 chr3 162475791 162476222 + 1.16667 NA Intergenic L1HS|LINE|L1 827295 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 189-42 chr4 83908603 83908866 + 1.16667 NA Intergenic Intergenic 372626 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 178.834-7 chr5 28248981 28249175 + 1.16667 NA Intergenic ERVL-B4-int|LTR|ERVL 38587 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 179.834 chr11 81238582 81238802 + 1.16667 NA Intergenic L2b|LINE|L2 -475889 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 255.167-15 chr17 39843348 39843724 + 1.16667 NA intron (NM_012481, intron 1 of 7) LFSINE_Vert|SINE|tRNA 20652 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 276.667-21 chr6 121807367 121807706 + 1.16667 NA Intergenic Charlie1a|DNA|hAT-Charlie 371890 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 305.167-6 chr2 140991809 140992330 + 1.16667 NA intron (NM_018557, intron 16 of 90) intron (NM_018557, intron 16 of 90) -405384 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 186.334-6 chr2 213862297 213862535 + 1.16667 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 104349 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 173.667-30 chr2 159767451 159767756 + 1.16667 NA 3' UTR (NM_022826, exon 10 of 10) 3' UTR (NM_022826, exon 10 of 10) 30605 NM_014880 9936 Hs.130014 NM_014880 ENSG00000241399 CD302 BIMLEC|CLEC13A|DCL-1|DCL1 CD302 molecule protein-coding 309.5-6 chr18 6843986 6844464 + 1.16667 NA intron (NM_001010000, intron 2 of 16) intron (NM_001010000, intron 2 of 16) 9740 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 190.834-2 chr19 1795952 1796270 + 1.16667 NA exon (NM_138813, exon 17 of 29) exon (NM_138813, exon 17 of 29) 16165 NM_001178002 148229 Hs.306212 NM_138813 ENSG00000130270 ATP8B3 ATPIK ATPase phospholipid transporting 8B3 protein-coding 220-8 chr13 23869511 23869816 + 1.16667 NA intron (NM_005932, intron 6 of 18) intron (NM_005932, intron 6 of 18) -19205 NM_001014442 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 336.334-2 chr12 46153223 46153737 + 1.16667 NA Intergenic Intergenic 113036 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 357.667-6 chr18 7027073 7027740 + 1.16667 NA intron (NM_005559, intron 16 of 62) L1MC4|LINE|L1 72729 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 172.667-38 chr3 120296542 120296821 + 1.16667 NA Intergenic Intergenic -52386 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 227.334-15 chr5 161097389 161097800 + 1.16667 NA Intergenic MIRc|SINE|MIR -158968 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 181.167-3 chr1 172613015 172613250 + 1.16667 NA Intergenic Intergenic -45876 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 259.334-9 chr8 85260308 85260623 + 1.16667 NA intron (NM_198584, intron 3 of 6) intron (NM_198584, intron 3 of 6) 15007 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 279-11 chr14 67264885 67265208 + 1.16667 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 23611 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 229.667-20 chr20 21700241 21700539 + 1.16667 NA intron (NR_109878, intron 1 of 4) intron (NR_109878, intron 1 of 4) 3195 NR_109878 101929608 Hs.694665 NR_109878 ENSG00000280350 LINC01726 - long intergenic non-protein coding RNA 1726 ncRNA 289.333-6 chr10 75850076 75850473 + 1.16667 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 67513 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 201-34 chr4 105228463 105228708 + 1.16667 NA intron (NM_001127208, intron 2 of 10) intron (NM_001127208, intron 2 of 10) 81900 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 281.167-9 chr14 82055576 82056048 + 1.16667 NA Intergenic Intergenic -312674 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 320.334-7 chr19 51570589 51571160 + 1.16667 NA promoter-TSS (NR_136208) promoter-TSS (NR_136208) -409 NR_136208 7728 Hs.119014 NM_007147 ENSG00000105497 ZNF175 OTK18 zinc finger protein 175 protein-coding 170.834 chr11 107015257 107015423 + 1.16667 NA intron (NM_001256424, intron 1 of 8) intron (NM_001256424, intron 1 of 8) 3136 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 268.5-25 chr8 106411389 106411738 + 1.16667 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -36361 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 208.501-2 chr5 59368059 59368240 + 1.16667 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -11179 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 197.5-25 chr3 142366397 142366569 + 1.16667 NA intron (NM_019001, intron 27 of 41) L2a|LINE|L2 81554 NM_001282857 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 268-33 chr7 38606697 38607076 + 1.16667 NA intron (NM_001635, intron 1 of 20) L1MB5|LINE|L1 24487 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 198.334-10 chr8 110138834 110139126 + 1.16667 NA Intergenic Intergenic -163209 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 244.167 chr1 80021856 80022215 + 1.16667 NA Intergenic Intergenic -513720 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 474.335 chr1 179867599 179868134 + 1.16667 NA intron (NM_001349934, intron 1 of 6) L2|LINE|L2 974 NM_001349933 163590 Hs.571797 NM_022347 ENSG00000169905 TOR1AIP2 IFRG15|LULL1|NET9 torsin 1A interacting protein 2 protein-coding 277.5 chr1 27173486 27173991 + 1.16667 NA Intergenic HSMAR1|DNA|TcMar-Mariner -18613 NR_046474 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 167.333-35 chr3 10376463 10376784 + 1.16667 NA intron (NM_001001331, intron 10 of 22) intron (NM_001001331, intron 10 of 22) 17939 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 368.5-16 chr8 103687747 103688272 + 1.16667 NA intron (NM_001348488, intron 3 of 25) L1MA8|LINE|L1 -131211 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 185.834-12 chr8 100310429 100310657 + 1.16667 NA promoter-TSS (NM_183419) promoter-TSS (NM_183419) -590 NM_183419 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 348.834 chr10 118852079 118852626 + 1.16667 NA Intergenic AluSx|SINE|Alu -97382 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 307.667-2 chr1 62934089 62934410 + 1.16667 NA Intergenic L1MC2|LINE|L1 76676 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 242.334-8 chr6 89018800 89019144 + 1.16667 NA Intergenic AluSz6|SINE|Alu -55354 NM_003800 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 358.167-11 chr7 23811807 23812291 + 1.16667 NA intron (NM_001260505, intron 22 of 22) L1MDb|LINE|L1 101830 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 376.333-7 chr15 44415682 44416209 + 1.16667 NA TTS (NM_138423) TTS (NM_138423) -11684 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 172.667-24 chr17 73621624 73621784 + 1.16667 NA intron (NM_001144952, intron 1 of 44) L1MEf|LINE|L1 22741 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 226.001-3 chr8 81645175 81645398 + 1.16667 NA Intergenic Intergenic -14009 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 227.501 chr20 34458576 34458793 + 1.16667 NA intron (NM_001257137, intron 14 of 25) MLT1C|LTR|ERVL-MaLR -7641 NR_030374 693229 NR_030374 ENSG00000207997 MIR644A MIR644|MIRN644|hsa-mir-644|hsa-mir-644a microRNA 644a ncRNA 171.334-5 chr22 19449770 19450001 + 1.16667 NA TTS (NM_005659) TTS (NM_005659) -1653 NM_173793 128977 Hs.659565 NM_173793 ENSG00000242259 C22orf39 - chromosome 22 open reading frame 39 protein-coding 196.667-46 chr8 134127873 134128152 + 1.16667 NA Intergenic MIRb|SINE|MIR 241516 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 311.167-4 chr11 59982198 59982732 + 1.16667 NA intron (NR_130719, intron 8 of 8) intron (NR_130719, intron 8 of 8) 39586 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 266.5-24 chr7 5533424 5533834 + 1.16667 NA Intergenic AluJb|SINE|Alu -3028 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 207.667-5 chr11 34570678 34571017 + 1.16667 NA Intergenic Intergenic -50246 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 222-28 chr8 64942498 64942837 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR -143930 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 319.334-3 chr1 92184931 92185381 + 1.16667 NA TTS (NM_015237) TTS (NM_015237) 16232 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 266.5-13 chr16 49194710 49195113 + 1.16667 NA Intergenic Intergenic 86927 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 218.334-6 chr2 172871486 172871713 + 1.16667 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) 11561 NM_001282900 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 260.5-14 chr19 3985801 3986391 + 1.16667 NA promoter-TSS (NM_001961) promoter-TSS (NM_001961) -633 NM_001961 1938 Hs.515070 NM_001961 ENSG00000167658 EEF2 EEF-2|EF-2|EF2|SCA26 eukaryotic translation elongation factor 2 protein-coding 189.167-29 chr4 73123298 73123505 + 1.16667 NA intron (NM_032217, intron 18 of 33) intron (NM_032217, intron 18 of 33) -53642 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 288.167-3 chr10 66239125 66239436 + 1.16667 NA intron (NM_001127384, intron 13 of 17) (TAAT)n|Simple_repeat|Simple_repeat 667855 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 284.833-14 chr5 134039408 134039951 + 1.16667 NA Intergenic Intergenic -34704 NM_003374 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 313.5-15 chr21 30275542 30275996 + 1.16667 NA Intergenic Intergenic 7181 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 208.167-13 chr2 19524817 19525113 + 1.16667 NA Intergenic Intergenic -166342 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 263-3 chr10 50404906 50405193 + 1.16667 NA intron (NM_147156, intron 6 of 10) L1MC4a|LINE|L1 -156439 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 212.167-2 chr10 71871242 71871435 + 1.16667 NA Intergenic (TTTTTG)n|Simple_repeat|Simple_repeat -20087 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 230-2 chr1 98469126 98469504 + 1.16667 NA Intergenic Intergenic -192406 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 336.833-5 chr22 45112730 45113252 + 1.16667 NA Intergenic L1MB4|LINE|L1 39593 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 264.5-16 chr21 27166084 27166659 + 1.16667 NA Intergenic Intergenic -199283 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 295.167-4 chr11 93092611 93093007 + 1.16667 NA Intergenic L1MB7|LINE|L1 104617 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 366.334-3 chr12 40396972 40397586 + 1.16667 NA intron (NM_173600, intron 1 of 173) intron (NM_173600, intron 1 of 173) 3885 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 257.834-6 chr3 50638925 50639405 + 1.16667 NA intron (NM_004635, intron 2 of 10) intron (NM_004635, intron 2 of 10) 22014 NM_001243925 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 466.334 chr8 128108405 128109372 + 1.16667 NA Intergenic MIR|SINE|MIR -41228 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 241.5-14 chr4 37388169 37388627 + 1.16667 NA intron (NM_001144990, intron 3 of 6) AluSx|SINE|Alu -65527 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 226.5-24 chr3 55897576 55897876 + 1.16667 NA intron (NR_132749, intron 12 of 17) intron (NR_132749, intron 12 of 17) -45132 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 199.5-47 chr8 136104510 136104796 + 1.16667 NA Intergenic Intergenic -426145 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 297.167-3 chr10 32863494 32863825 + 1.16667 NA intron (NM_001321115, intron 42 of 43) L1M2a|LINE|L1 37813 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 190.167-22 chr7 30061922 30062242 + 1.16667 NA intron (NM_001363473, intron 11 of 12) intron (NM_001363473, intron 11 of 12) 16997 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 332-2 chr10 92101579 92102091 + 1.16667 NA intron (NM_001178137, intron 7 of 9) AluSz|SINE|Alu 141444 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 287.834 chr13 79391276 79391539 + 1.16667 NA intron (NM_022118, intron 1 of 20) intron (NM_022118, intron 1 of 20) 14814 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 213-26 chr2 188774829 188775197 + 1.16667 NA intron (NR_161166, intron 1 of 1) AluSc8|SINE|Alu 15110 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 209.167-24 chr4 31434883 31435254 + 1.16667 NA Intergenic L1MA7|LINE|L1 -71476 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 445.5-7 chr6 129490428 129491403 + 1.16667 NA intron (NM_000426, intron 56 of 64) intron (NM_000426, intron 56 of 64) 219262 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 273.001-4 chr3 119697024 119697269 + 1.16667 NA Intergenic MIR|SINE|MIR -5876 NM_001320318 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CFAP91|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 265.167-3 chr11 115215809 115216160 + 1.16667 NA intron (NM_001098517, intron 6 of 8) intron (NM_001098517, intron 6 of 8) -117593 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 178.167-15 chr21 17579161 17579608 + 1.16667 NA intron (NM_001207066, intron 7 of 7) AluSc8|SINE|Alu -32302 NR_149073 110806272 Hs.607138 NR_149073 ENSG00000280594 BTG3-AS1 ASBEL BTG3 antisense RNA 1 ncRNA 206.167-10 chr16 12613858 12614163 + 1.16667 NA Intergenic LTR10A|LTR|ERV1 -106311 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 249.833-7 chr16 26327348 26327763 + 1.16667 NA Intergenic L1MC2|LINE|L1 302318 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 225.001-3 chr8 87965554 87966093 + 1.16667 NA Intergenic L1MC1|LINE|L1 -91808 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 184-56 chr9 79372370 79372580 + 1.16667 NA Intergenic Intergenic -199298 NM_001282753 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 374.334 chr10 116789184 116789625 + 1.16667 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) 38164 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 293.834 chr10 74116056 74116486 + 1.16667 NA intron (NM_014000, intron 21 of 21) intron (NM_014000, intron 21 of 21) 34557 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 214.833-20 chr8 25183736 25184236 + 1.16667 NA promoter-TSS (NM_001322810) promoter-TSS (NM_001322810) -703 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 224-12 chr14 34548560 34548879 + 1.16667 NA Intergenic Intergenic 2005 NR_004421 6060 NR_004421 ENSG00000207389 RNU1-4 HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F RNA, U1 small nuclear 4 snRNA 292.834-6 chr7 29002201 29002679 + 1.16667 NA intron (NR_038965, intron 4 of 4) L1MEg|LINE|L1 22473 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 255.001-4 chrX 119005078 119005497 + 1.16667 NA intron (NM_001031855, intron 5 of 10) intron (NM_001031855, intron 5 of 10) 28955 NM_001289109 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 193.334-6 chr14 48971395 48971634 + 1.16667 NA Intergenic Intergenic 614866 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 218-31 chr4 74182417 74182852 + 1.16667 NA intron (NM_001351314, intron 5 of 9) intron (NM_001351314, intron 5 of 9) 24516 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 193.334-4 chr12 10258887 10259103 + 1.16667 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) 20034 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 257.001 chr17 49007565 49007794 + 1.16667 NA intron (NM_001160423, intron 2 of 12) intron (NM_001160423, intron 2 of 12) 10294 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 237.334-10 chr2 103397890 103398242 + 1.16667 NA Intergenic Intergenic -413637 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 227.334-19 chr8 116471866 116472400 + 1.16667 NA Intergenic Intergenic -147074 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 301.834-10 chr5 129854323 129854810 + 1.16667 NA Intergenic Intergenic -49899 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 325.167-14 chr8 77318774 77319113 + 1.16667 NA Intergenic Intergenic -131754 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 248.834-9 chr7 94473784 94474162 + 1.16667 NA Intergenic MIR|SINE|MIR -35836 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 214.334-6 chr2 29488022 29488279 + 1.16667 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) -12773 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 354.001 chr12 112136715 112137061 + 1.16667 NA intron (NM_006700, intron 4 of 11) AluJr|SINE|Alu 11328 NM_006700 10906 Hs.5148 NM_006700 ENSG00000135148 TRAFD1 FLN29 TRAF-type zinc finger domain containing 1 protein-coding 308.334 chr11 91433471 91433820 + 1.16667 NA Intergenic L1PA11|LINE|L1 -564443 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 284.5-17 chr5 90247219 90247619 + 1.16667 NA intron (NR_120601, intron 3 of 5) MER20B|DNA|hAT-Charlie 42652 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 181.5-28 chr22 24503083 24503349 + 1.16667 NA intron (NM_016327, intron 3 of 9) HAL1|LINE|L1 7884 NM_016327 51733 Hs.731656 NM_016327 ENSG00000100024 UPB1 BUP1 beta-ureidopropionase 1 protein-coding 224.834-2 chr11 72257712 72257974 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL -13667 NM_005169 401 Hs.731115 NM_005169 ENSG00000165462 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired like homeobox 2A protein-coding 188.334-5 chr2 68972914 68973147 + 1.16667 NA Intergenic Intergenic -1543 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 199.833-11 chr14 70585416 70585649 + 1.16667 NA intron (NM_005466, intron 7 of 7) MER30|DNA|hAT-Charlie 15158 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 182.833-22 chr2 216687796 216688196 + 1.16667 NA intron (NM_000599, intron 1 of 3) intron (NM_000599, intron 1 of 3) 7553 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 188.5-38 chr5 159352134 159352419 + 1.16667 NA intron (NR_037889, intron 3 of 4) L1M4|LINE|L1 20758 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 166.667-40 chr3 126454204 126454450 + 1.16667 NA intron (NR_104249, intron 6 of 8) intron (NR_104249, intron 6 of 8) 21564 NM_025112 79364 Hs.440049 NM_025112 ENSG00000070476 ZXDC ZXDL ZXD family zinc finger C protein-coding 314.334-2 chr1 152975688 152976115 + 1.16667 NA Intergenic Intergenic 5253 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 245.334-9 chr22 22961678 22961973 + 1.16667 NA Intergenic L1MEc|LINE|L1 74009 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 231.334-2 chr12 62429351 62429578 + 1.16667 NA Intergenic L1M3|LINE|L1 -37362 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 169.167-15 chr2 54053310 54053507 + 1.16667 NA intron (NM_001320586, intron 3 of 6) intron (NM_001320586, intron 3 of 6) -62207 NM_001320590 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 184.834-6 chr13 98412371 98412620 + 1.16667 NA intron (NM_005766, intron 16 of 26) intron (NM_005766, intron 16 of 26) 109630 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 268-21 chr18 3572422 3572789 + 1.16667 NA intron (NM_001242762, intron 5 of 9) AluSz6|SINE|Alu -21509 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 174.834-9 chr3 77609850 77610244 + 1.16667 NA intron (NM_001290039, intron 22 of 26) intron (NM_001290039, intron 22 of 26) 438916 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 184.667-36 chr3 137294788 137295003 + 1.16667 NA Intergenic Intergenic 336912 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 505.5-8 chrX 70433724 70434560 + 1.16667 NA TTS (NM_017711) TTS (NM_017711) -10693 NM_021120 1741 Hs.721586 NM_020730 ENSG00000082458 DLG3 MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR discs large MAGUK scaffold protein 3 protein-coding 368.167-2 chr1 247371082 247371710 + 1.16667 NA Intergenic Intergenic -39529 NM_032752 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 200.167-30 chr8 125970523 125970875 + 1.16667 NA Intergenic Intergenic -19502 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 324.667-3 chr11 76394038 76394569 + 1.16667 NA intron (NM_001347884, intron 1 of 1) L1MA3|LINE|L1 12980 NM_001347885 100506127 Hs.503319 NM_001013634 ENSG00000179240 GVQW3 - GVQW motif containing 3 protein-coding 272.501-2 chr5 133421345 133421590 + 1.16667 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 6239 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 182.5-23 chr2 147560697 147560923 + 1.16667 NA Intergenic Intergenic -283707 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 235.167-12 chr15 68091591 68091935 + 1.16667 NA intron (NM_016166, intron 2 of 13) MER47A|DNA|TcMar-Tigger 37187 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 171.167-35 chr7 81092746 81092971 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -170469 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 275.167-10 chr14 49075399 49075836 + 1.16667 NA Intergenic Intergenic 510763 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 213.667-10 chr15 83939069 83939288 + 1.16667 NA intron (NM_207517, intron 17 of 29) L1M5|LINE|L1 -141009 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 238.667 chr1 172937746 172938123 + 1.16667 NA Intergenic MIRb|SINE|MIR 113029 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 256.667-17 chr21 16064350 16064635 + 1.16667 NA Intergenic L1ME3|LINE|L1 -5996 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 266.001-2 chr8 130785592 130786011 + 1.16667 NA intron (NM_001115, intron 15 of 17) L2a|LINE|L2 255108 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 277.833-3 chr10 9210365 9210837 + 1.16667 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -65012 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 196.334-13 chr8 82260831 82261084 + 1.16667 NA Intergenic Intergenic -418671 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 166-24 chr14 55474145 55474520 + 1.16667 NA Intergenic AluJb|SINE|Alu -33787 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 194.5-5 chr1 183515142 183515405 + 1.16667 NA intron (NM_001331007, intron 3 of 23) MamRTE1|LINE|RTE-BovB 42774 NM_001331007 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 249.501-2 chr15 23485458 23485763 + 1.16667 NA Intergenic L1ME1|LINE|L1 -38367 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 377.5-3 chr17 71516828 71517227 + 1.16667 NA Intergenic Intergenic -314848 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 193.5-28 chr20 21277313 21277579 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -25885 NM_012255 22803 Hs.255932 NM_012255 ENSG00000088930 XRN2 - 5'-3' exoribonuclease 2 protein-coding 209.667-22 chr22 27881690 27882108 + 1.16667 NA intron (NM_001284278, intron 7 of 11) intron (NM_001284278, intron 7 of 11) 37315 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 211.833 chr1 50489565 50489797 + 1.16667 NA intron (NM_007051, intron 17 of 18) intron (NM_007051, intron 17 of 18) -66238 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 226.667-41 chr8 117937338 117937618 + 1.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -16565 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 436.334-4 chr3 14508646 14509434 + 1.16667 NA intron (NM_001080423, intron 17 of 23) intron (NM_001080423, intron 17 of 23) 31302 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 208.667-34 chr5 29698035 29698226 + 1.16667 NA Intergenic MER76|LTR|ERVL -182430 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 260.167-28 chrX 85289376 85289823 + 1.16667 NA intron (NM_001307940, intron 15 of 15) L1M4b|LINE|L1 45608 NM_001330574 7552 Hs.326801 NM_021998 ENSG00000147180 ZNF711 CMPX1|MRX97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1 zinc finger protein 711 protein-coding 199.333-14 chr13 83060919 83061260 + 1.16667 NA Intergenic Intergenic 821304 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 358.167-10 chr5 36606140 36606696 + 1.16667 NA promoter-TSS (NM_001166696) promoter-TSS (NM_001166696) 63 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 230.5-13 chr17 67189323 67189682 + 1.16667 NA intron (NM_001330447, intron 11 of 32) intron (NM_001330447, intron 11 of 32) -55274 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 204.5 chr1 84734317 84734657 + 1.16667 NA Intergenic MLT2B1|LTR|ERVL -44019 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 199.5-10 chr12 99206979 99207227 + 1.16667 NA intron (NM_152788, intron 14 of 25) MER34A|LTR|ERV1 -52013 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 385.334-4 chr17 30092569 30093237 + 1.16667 NA exon (NM_198529, exon 22 of 23) exon (NM_198529, exon 22 of 23) -23904 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 345.5-16 chr5 180315845 180316338 + 1.16667 NA intron (NM_005110, intron 13 of 18) intron (NM_005110, intron 13 of 18) -24008 NM_139069 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 208.334 chr1 28437138 28437412 + 1.16667 NA promoter-TSS (NM_023923) promoter-TSS (NM_023923) -875 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 167.667-7 chr14 43005175 43005458 + 1.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 1398460 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 171-41 chr21 27715784 27715993 + 1.16667 NA Intergenic Intergenic -6491 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 215-44 chr9 37228013 37228226 + 1.16667 NA intron (NM_001289120, intron 2 of 8) L1ME1|LINE|L1 107521 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 254.5-18 chr19 32053306 32053777 + 1.16667 NA Intergenic Intergenic 27679 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 199.833-7 chr10 127127141 127127563 + 1.16667 NA intron (NM_001290223, intron 26 of 51) intron (NM_001290223, intron 26 of 51) 69239 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 184.333-48 chrX 38249084 38249439 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -28337 NM_001170750 8406 Hs.15154 NM_006307 ENSG00000101955 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi repeat containing protein X-linked protein-coding 322.333-7 chr2 21255873 21256283 + 1.16667 NA Intergenic Intergenic 132092 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 250.334-3 chr15 73053181 73053432 + 1.16667 NA intron (NM_002499, intron 1 of 28) intron (NM_002499, intron 1 of 28) 822 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 289.833 chr1 115976805 115977321 + 1.16667 NA intron (NM_018420, intron 1 of 11) intron (NM_018420, intron 1 of 11) 213 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 194-29 chr3 99841545 99841750 + 1.16667 NA intron (NM_001282794, intron 2 of 2) L1PB1|LINE|L1 -17782 NR_110821 101929357 Hs.741615 NR_110821 HP09053 - uncharacterized LOC101929357 ncRNA 221.167-4 chr10 24256312 24256829 + 1.16667 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -19115 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 315.333-4 chr1 236277875 236278252 + 1.16667 NA intron (NM_019891, intron 1 of 15) L1MEd|LINE|L1 3895 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 340.501-2 chr2 77522356 77522993 + 1.16667 NA promoter-TSS (NM_001134745) promoter-TSS (NM_001134745) -241 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 317.167-9 chr3 12237989 12238552 + 1.16667 NA Intergenic L1PB4|LINE|L1 -49215 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 312.334-3 chr3 153293736 153294029 + 1.16667 NA Intergenic Intergenic 131656 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 272.5-2 chr10 97675041 97675555 + 1.16667 NA 3' UTR (NM_018425, exon 9 of 9) 3' UTR (NM_018425, exon 9 of 9) 11943 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 354-10 chr20 58258031 58258620 + 1.16667 NA intron (NR_003505, intron 4 of 16) L1M4a2|LINE|L1 -29672 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 239.167-25 chr3 178113397 178113847 + 1.16667 NA Intergenic L1MEf|LINE|L1 296757 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 190.667-7 chr10 55668479 55668725 + 1.16667 NA Intergenic Intergenic -40660 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 333.167-2 chr4 46931760 46932147 + 1.16667 NA intron (NM_001204267, intron 7 of 7) intron (NM_001204267, intron 7 of 7) -22708 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 280.001-2 chr19 30663096 30663387 + 1.16667 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 290857 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 275.167-3 chr1 210239177 210239447 + 1.16667 NA intron (NM_001354173, intron 2 of 4).2 intron (NM_001354173, intron 2 of 4).2 -5427 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 204.834-9 chr4 184191669 184191885 + 1.16667 NA intron (NM_153343, intron 1 of 7) L1MB7|LINE|L1 26096 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 199.834-8 chr8 59576025 59576396 + 1.16667 NA Intergenic L1MD2|LINE|L1 457000 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 170.834-5 chr5 174755124 174755447 + 1.16667 NA Intergenic L1MB5|LINE|L1 3551 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 204.167-14 chr3 82572949 82573238 + 1.16667 NA Intergenic Intergenic 586951 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 226.5-13 chr13 94621604 94621870 + 1.16667 NA intron (NM_180989, intron 6 of 8) intron (NM_180989, intron 6 of 8) 19880 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 265.5-28 chr6 150081353 150081793 + 1.16667 NA Intergenic Intergenic -12452 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 293.5-15 chr20 32017643 32018095 + 1.16667 NA exon (NM_001365692, exon 3 of 10) exon (NM_001365692, exon 3 of 10) 7431 NM_080625 140706 Hs.382151 NM_080625 ENSG00000101331 CCM2L C20orf160|dJ310O13.5 CCM2 like scaffold protein protein-coding 405.167 chr11 10930324 10931089 + 1.16667 NA Intergenic Intergenic 72489 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 205.834-6 chr5 91772323 91772717 + 1.16667 NA Intergenic Intergenic -389203 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 229-13 chr20 4661850 4662134 + 1.16667 NA Intergenic AluYc|SINE|Alu -24464 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 287.667-5 chr10 97689733 97690101 + 1.16667 NA Intergenic Intergenic -2676 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 468.001-2 chr2 71435557 71436014 + 1.16667 NA TTS (NM_014497) TTS (NM_014497) -17776 NM_001130980 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 201.5-13 chr15 46299735 46299959 + 1.16667 NA Intergenic AluSx3|SINE|Alu 594652 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 323.334-2 chr17 48334531 48334890 + 1.16667 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 40363 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 199.5-49 chr9 31555675 31555943 + 1.16667 NA Intergenic Intergenic -174319 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 213.667-37 chr4 175697799 175698078 + 1.16667 NA intron (NM_201592, intron 2 of 6) intron (NM_201592, intron 2 of 6) 89738 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 242.667-26 chr7 122222443 122222741 + 1.16667 NA Intergenic Intergenic -78343 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 249.167-22 chr4 175136446 175136778 + 1.16667 NA Intergenic Intergenic 218254 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 281.334-4 chr13 29845594 29845983 + 1.16667 NA intron (NM_007106, intron 1 of 4) intron (NM_007106, intron 1 of 4) 4829 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 387.667-3 chr17 76714837 76715450 + 1.16667 NA 3' UTR (NM_001081461, exon 7 of 7) 3' UTR (NM_001081461, exon 7 of 7) -4178 NM_001008528 439921 Hs.250723 NM_198530 ENSG00000182534 MXRA7 - matrix remodeling associated 7 protein-coding 232.501-2 chr21 30757050 30757454 + 1.16667 NA Intergenic Intergenic -1824 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 296.834-3 chr14 86903505 86904126 + 1.16667 NA Intergenic Intergenic -1963 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 274.501-3 chrX 148049301 148049596 + 1.16667 NA Intergenic L1MC4|LINE|L1 68111 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 170.5-40 chr6 145803135 145803404 + 1.16667 NA intron (NM_001348092, intron 2 of 2) intron (NM_001348092, intron 2 of 2) 11526 NM_001348092 84085 Hs.421095 NM_032145 ENSG00000118496 FBXO30 Fbx30 F-box protein 30 protein-coding 352.833-4 chrX 70097239 70097768 + 1.16667 NA Intergenic Intergenic 35046 NM_207320 139562 Hs.447381 NM_207320 ENSG00000189401 OTUD6A DUBA2|HSHIN6 OTU deubiquitinase 6A protein-coding 283.667-14 chr6 56288186 56288445 + 1.16667 NA intron (NM_001318752, intron 1 of 28) MER112|DNA|hAT-Charlie -40735 NM_030820 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 228-35 chr5 10313597 10313985 + 1.16667 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR -5889 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 192.167-10 chr10 73039575 73039845 + 1.16667 NA intron (NM_001017962, intron 9 of 14) intron (NM_001017962, intron 9 of 14) 57264 NM_001142595 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 339.167-14 chr6 63351658 63352131 + 1.16667 NA Intergenic Intergenic -31911 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 365-6 chr5 94218378 94218901 + 1.16667 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -106940 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 168.167-21 chr3 95374003 95374299 + 1.16667 NA Intergenic L1MEc|LINE|L1 309042 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 221.501-2 chr9 88227880 88228254 + 1.16667 NA Intergenic MLT2C2|LTR|ERVL -89586 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 268-26 chr3 17841463 17841900 + 1.16667 NA Intergenic Intergenic 98737 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 311.834-6 chr9 32604123 32604841 + 1.16667 NA Intergenic Intergenic 31187 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 181.833-18 chr3 94955109 94955501 + 1.16667 NA intron (NR_015400, intron 1 of 7) LTR80A|LTR|ERVL 17042 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 200.667-46 chr6 50521234 50521771 + 1.16667 NA Intergenic Intergenic -192042 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 205.667-42 chr8 98166732 98166954 + 1.16667 NA Intergenic Intergenic 49003 NM_015029 10940 Hs.252828 NM_015029 ENSG00000104356 POP1 ANXD2 POP1 homolog, ribonuclease P/MRP subunit protein-coding 260.667-18 chr17 34169238 34169520 + 1.16667 NA TTS (NR_110748) TTS (NR_110748) -12573 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 235.834-6 chr18 6365815 6366167 + 1.16667 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 1692 NM_001365770 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 231.501-2 chr4 110782466 110782780 + 1.16667 NA Intergenic MIR|SINE|MIR 78024 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 179.5-4 chr10 79923485 79924093 + 1.16667 NA TTS (NR_002724) TTS (NR_002724) 3611 NR_002724 8512 Hs.733579 NR_002724 ENSG00000242600 MBL1P COLEC3P|MBL1P1 mannose binding lectin 1, pseudogene pseudo 230.5-12 chr17 66194701 66195092 + 1.16667 NA Intergenic AluY|SINE|Alu -2763 NM_001353129 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 268.167-9 chr14 58395642 58396030 + 1.16667 NA promoter-TSS (NM_207377) promoter-TSS (NM_207377) -94 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 295.667-8 chr15 74493436 74493842 + 1.16667 NA Intergenic AluSq2|SINE|Alu 32374 NR_038448 440288 Hs.611046 NR_038448 ENSG00000247240 UBL7-AS1 - UBL7 antisense RNA 1 (head to head) ncRNA 169.667-56 chr7 28040442 28040611 + 1.16667 NA intron (NM_175061, intron 1 of 4) L2a|LINE|L2 -139931 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 268.667-14 chr17 68010649 68011084 + 1.16667 NA Intergenic AluJb|SINE|Alu -17260 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 245-30 chr5 6673707 6674057 + 1.16667 NA non-coding (NR_136739, exon 6 of 6) non-coding (NR_136739, exon 6 of 6) 33829 NR_103771 100505625 Hs.550028 NR_103771 ENSG00000248677 LINC02102 - long intergenic non-protein coding RNA 2102 ncRNA 267.167-3 chr14 22267521 22267817 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 165084 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 218.5-29 chr5 104769620 104769952 + 1.16667 NA Intergenic Intergenic -329688 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 301.833-6 chr22 22316470 22317024 + 1.16667 NA intron (NR_027293, intron 8 of 10) MSTA-int|LTR|ERVL-MaLR 18649 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 309.501 chr10 118377120 118377423 + 1.16667 NA Intergenic Intergenic 20163 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 235.334-2 chr17 57735955 57736185 + 1.16667 NA Intergenic Intergenic 9229 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 273.167-13 chr6 26283527 26283928 + 1.16667 NA Intergenic Intergenic 1772 NM_003543 8365 Hs.591790 NM_003543 ENSG00000158406 HIST1H4H H4/h|H4FH histone cluster 1 H4 family member h protein-coding 347.667-10 chr4 139618556 139618891 + 1.16667 NA Intergenic Intergenic -47045 NM_001204367 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 227.334-9 chr14 54653121 54653406 + 1.16667 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 85651 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 361-3 chr1 206905404 206905985 + 1.16667 NA intron (NM_005449, intron 7 of 7) intron (NM_005449, intron 7 of 7) 8251 NM_001185158 11009 Hs.58831 NM_006850 ENSG00000162892 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 198-32 chr4 52977033 52977391 + 1.16667 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 114895 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 421.001-4 chr9 117559253 117559656 + 1.16667 NA Intergenic Intergenic -89152 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 168.334-6 chr4 112252576 112252766 + 1.16667 NA intron (NM_018569, intron 1 of 9) intron (NM_018569, intron 1 of 9) 20884 NR_136622 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 463.667-6 chr2 72873810 72874421 + 1.16667 NA Intergenic Intergenic -13293 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 261.833-9 chr18 9207301 9207803 + 1.16667 NA intron (NM_015208, intron 4 of 12) intron (NM_015208, intron 4 of 12) 69989 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 327.334-7 chr3 45971254 45971612 + 1.16667 NA intron (NM_024513, intron 6 of 17) L1MC4|LINE|L1 24391 NM_024513 79443 Hs.200227 NM_024513 ENSG00000163820 FYCO1 CATC2|CTRCT18|RUFY3|ZFYVE7 FYVE and coiled-coil domain containing 1 protein-coding 171.333-9 chr11 78748804 78749077 + 1.16667 NA intron (NM_001098816, intron 19 of 33) MIRb|SINE|MIR -174076 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 295-30 chr9 31928500 31928922 + 1.16667 NA Intergenic Intergenic -455892 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 206.834-8 chr17 35110208 35110398 + 1.16667 NA intron (NR_037711, intron 2 of 8) L1MC4|LINE|L1 9455 NM_001142571 5892 Hs.631757 NM_002878 ENSG00000185379 RAD51D BROVCA4|R51H3|RAD51L3|TRAD RAD51 paralog D protein-coding 203.167-15 chr2 109695293 109695627 + 1.16667 NA Intergenic L1MDb|LINE|L1 81096 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 334.833-4 chr12 5235551 5235923 + 1.16667 NA intron (NR_120476, intron 4 of 4) intron (NR_120476, intron 4 of 4) 7414 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 320.667-12 chr3 89255010 89255373 + 1.16667 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 147570 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 436.167-4 chr2 45643111 45643808 + 1.16667 NA Intergenic Intergenic -8216 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 229-7 chr19 45863109 45863418 + 1.16667 NA promoter-TSS (NM_004819) promoter-TSS (NM_004819) -116 NM_004819 8189 Hs.515475 NM_004819 ENSG00000125755 SYMPK SPK|SYM symplekin protein-coding 204.334-6 chr3 47982680 47982866 + 1.16667 NA intron (NM_002375, intron 2 of 18) intron (NM_002375, intron 2 of 18) 106075 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 180.667-44 chr8 71833129 71833315 + 1.16667 NA Intergenic Intergenic -9901 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 240-19 chr14 87329257 87329792 + 1.16667 NA Intergenic Intergenic 325770 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 205.5-38 chr7 144046126 144046450 + 1.16667 NA Intergenic Intergenic -4114 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 208.5-22 chr2 145463182 145463450 + 1.16667 NA Intergenic Intergenic 795349 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 163.167-15 chr17 44775675 44775864 + 1.16667 NA intron (NM_001318933, intron 17 of 26) CpG-11250 16781 NM_001318933 4185 Hs.6088 NM_002390 ENSG00000073670 ADAM11 MDC ADAM metallopeptidase domain 11 protein-coding 339.833-6 chr2 22562050 22562615 + 1.16667 NA Intergenic Intergenic 25853 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 319.334 chr1 32140791 32141175 + 1.16667 NA intron (NM_012316, intron 1 of 13) intron (NM_012316, intron 1 of 13) 32927 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 189.667-44 chr6 73383027 73383286 + 1.16667 NA Intergenic Intergenic -11672 NM_018665 55510 Hs.125507 NM_018665 ENSG00000080007 DDX43 CT13|HAGE DEAD-box helicase 43 protein-coding 559.167-4 chr8 120089065 120090441 + 1.16667 NA Intergenic Intergenic -35349 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 292.834-2 chr12 108457219 108457660 + 1.16667 NA Intergenic Intergenic 16250 NR_120483 102723562 Hs.455693 NR_120483 ENSG00000247213 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 205.167-12 chr2 126308372 126308748 + 1.16667 NA Intergenic LTR1A2|LTR|ERV1 -190575 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 245.5-8 chr11 40273767 40274153 + 1.16667 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) 19170 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 314.501 chr8 106485296 106485669 + 1.16667 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 37558 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 247.334 chr4 168138332 168138726 + 1.16667 NA intron (NM_007193, intron 2 of 11) L1P4|LINE|L1 45992 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 234.333-7 chr11 63274684 63275009 + 1.16667 NA Intergenic ERVL47-int|LTR|ERVL -15057 NM_001039752 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 301.166-5 chr13 81017736 81018309 + 1.16667 NA promoter-TSS (NR_125770) promoter-TSS (NR_125770) -369 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 399.667-5 chr5 4512481 4513092 + 1.16667 NA Intergenic Intergenic -260695 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 421.168 chr1 39176152 39176595 + 1.16667 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 92206 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 370.167-5 chr2 44811857 44812306 + 1.16667 NA Intergenic L1MB4|LINE|L1 126807 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 244.167-10 chr14 86652390 86652661 + 1.16667 NA Intergenic Arthur1|DNA|hAT-Tip100 -253253 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 311.834 chr11 128039276 128039756 + 1.16667 NA Intergenic Intergenic -169250 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 172.5-45 chr5 150469330 150469769 + 1.16667 NA Intergenic AluSq2|SINE|Alu 16443 NR_105061 102546298 Hs.570892 NR_105061 ENSG00000254333 NDST1-AS1 - NDST1 antisense RNA 1 ncRNA 192.167-33 chr7 51287759 51287969 + 1.16667 NA intron (NM_015198, intron 1 of 12) L1ME1|LINE|L1 28945 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 322.001-2 chr5 10408061 10408437 + 1.16667 NA intron (NM_001270660, intron 16 of 24) intron (NM_001270660, intron 16 of 24) 5885 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 258.334-4 chr2 50465320 50465754 + 1.16667 NA exon (NM_001135659, exon 18 of 24) exon (NM_001135659, exon 18 of 24) -117781 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 423-12 chr7 83366378 83367020 + 1.16667 NA 3' UTR (NM_012431, exon 17 of 17) 3' UTR (NM_012431, exon 17 of 17) -203815 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 166.834-3 chr19 9664208 9664419 + 1.16667 NA intron (NM_001300885, intron 1 of 5) AluSp|SINE|Alu 10787 NM_001300885 54811 Hs.371107 NM_017656 ENSG00000171466 ZNF562 - zinc finger protein 562 protein-coding 191.833-11 chr18 36074059 36074310 + 1.16667 NA Intergenic Intergenic -6590 NM_001303413 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 284.834-5 chr3 122417386 122417888 + 1.16667 NA intron (NR_125405, intron 1 of 2) intron (NR_125405, intron 1 of 2) 1431 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 472.001 chr13 75317229 75317688 + 1.16667 NA intron (NM_001286659, intron 10 of 18) intron (NM_001286659, intron 10 of 18) 76870 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 241.334-10 chr9 132267440 132267687 + 1.16667 NA intron (NM_001351527, intron 25 of 25) intron (NM_001351527, intron 25 of 25) 87293 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 300.001-2 chr7 66270022 66270344 + 1.16667 NA intron (NM_003596, intron 2 of 5) L2a|LINE|L2 64849 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 286.001-3 chr17 43984090 43984405 + 1.16667 NA intron (NM_004160, intron 1 of 6) CpG 20222 NM_004160 5697 Hs.169249 NM_004160 ENSG00000131096 PYY PYY-I|PYY1 peptide YY protein-coding 241-4 chr13 65349619 65349966 + 1.16667 NA Intergenic L2c|LINE|L2 -516255 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 442.333-4 chr7 157456577 157457147 + 1.16667 NA Intergenic L1M4|LINE|L1 -9369 NR_110157 101927914 Hs.623826 NR_110157 ENSG00000234210 LOC101927914 - uncharacterized LOC101927914 ncRNA 282-4 chr10 64538334 64538758 + 1.16667 NA Intergenic Intergenic -286982 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 478.5-3 chr12 46371010 46371695 + 1.16667 NA 5' UTR (NM_018976, exon 2 of 16) 5' UTR (NM_018976, exon 2 of 16) 1421 NM_018976 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 195.5-36 chr8 82714177 82714364 + 1.16667 NA Intergenic L1MA8|LINE|L1 -197834 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 225.334-2 chr12 4768118 4768404 + 1.16667 NA intron (NM_017417, intron 10 of 10) MamRep1151|LTR?|LTR? -40915 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 213.834 chr1 151090308 151090633 + 1.16667 NA exon (NM_144618, exon 3 of 9) exon (NM_144618, exon 3 of 9) 19709 NM_001323912 126626 Hs.15671 NM_144618 ENSG00000143458 GABPB2 GABPB-2 GA binding protein transcription factor subunit beta 2 protein-coding 335.501 chr16 2968722 2969335 + 1.16667 NA promoter-TSS (NM_152341) promoter-TSS (NM_152341) -320 NM_001284512 124222 Hs.351474 NM_152341 ENSG00000162073 PAQR4 - progestin and adipoQ receptor family member 4 protein-coding 204.667-6 chr11 3610813 3611024 + 1.16667 NA Intergenic L2c|LINE|L2 -15542 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel subfamily C member 2 (pseudogene) pseudo 179.167-9 chr15 60217725 60217969 + 1.16667 NA Intergenic Intergenic 180139 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 245.167-3 chr10 62732893 62733204 + 1.16667 NA Intergenic L2b|LINE|L2 -71672 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 227.334-17 chr7 6443892 6444101 + 1.16667 NA intron (NM_001142936, intron 2 of 12) AluJo|SINE|Alu 3958 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 212.667-51 chr9 118916650 118916861 + 1.16667 NA Intergenic L1MA2|LINE|L1 237084 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 170.667-48 chr7 98822805 98822997 + 1.16667 NA Intergenic Intergenic 47113 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 283.333 chr1 223823180 223823663 + 1.16667 NA intron (NM_005426, intron 1 of 18) intron (NM_005426, intron 1 of 18) 22526 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 364.5-14 chr9 31119493 31120039 + 1.16667 NA Intergenic MER83B-int|LTR|ERV1 261724 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 241.167-12 chr16 58137960 58138380 + 1.16667 NA Intergenic L1MEg|LINE|L1 -8745 NR_136632 29105 Hs.532755 NM_013242 ENSG00000070761 CFAP20 BUG22|C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 244.001-2 chr14 47066295 47066594 + 1.16667 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 276802 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 322.5-10 chr17 80467254 80467612 + 1.16667 NA 3' UTR (NM_002522, exon 5 of 5) 3' UTR (NM_002522, exon 5 of 5) 9174 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 439.501-2 chr6 68641556 68642171 + 1.16667 NA intron (NM_001704, intron 3 of 31) (AATATAT)n|Simple_repeat|Simple_repeat 6581 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 216.167-20 chr18 9025392 9025693 + 1.16667 NA Intergenic L3|LINE|CR1 -77157 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 268.167-17 chr3 195002403 195002784 + 1.16667 NA Intergenic Intergenic -91995 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 284-14 chr19 14579336 14579796 + 1.16667 NA Intergenic L2a|LINE|L2 -3518 NR_109784 388512 Hs.567933 NM_207390 ENSG00000187912 CLEC17A - C-type lectin domain containing 17A protein-coding 253.667-3 chr1 170010652 170010873 + 1.16667 NA intron (NM_014970, intron 10 of 19) intron (NM_014970, intron 10 of 19) 58153 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 240.167-17 chr4 115534724 115535073 + 1.16667 NA Intergenic Intergenic -421278 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 242.5-25 chr2 200654352 200654732 + 1.16667 NA intron (NM_001159, intron 26 of 34) intron (NM_001159, intron 26 of 34) -41181 NR_135011 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 381.834-4 chr6 3279561 3280148 + 1.16667 NA intron (NM_021945, intron 10 of 10) intron (NM_021945, intron 10 of 10) 20907 NM_001128592 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome assembly chaperone 4 protein-coding 212.334 chr1 235843998 235844419 + 1.16667 NA intron (NR_102436, intron 1 of 3) intron (NR_102436, intron 1 of 3) 8852 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 187.834-2 chr1 103071838 103072123 + 1.16667 NA intron (NM_001854, intron 4 of 66) MIR|SINE|MIR 36516 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 222.667-18 chr16 13488215 13488502 + 1.16667 NA Intergenic Intergenic -431799 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 396.834-4 chr3 187604082 187604680 + 1.16667 NA Intergenic Intergenic 66013 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 197.501 chr7 115531539 115531721 + 1.16667 NA Intergenic Intergenic 49811 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 212.334-5 chr6 40846197 40846451 + 1.16667 NA Intergenic Intergenic 176956 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 183.5-3 chr1 31024923 31025158 + 1.16667 NA intron (NM_001020658, intron 3 of 21) intron (NM_001020658, intron 3 of 21) 40677 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 191-17 chr14 61480061 61480453 + 1.16667 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 89937 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 250.501-6 chr9 83707736 83707979 + 1.16667 NA promoter-TSS (NR_135839) promoter-TSS (NR_135839) 22 NR_135839 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 272.501-3 chr6 20529329 20529809 + 1.16667 NA Intergenic AluSx|SINE|Alu -4888 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 286.333-6 chr2 46877036 46877501 + 1.16667 NA Intergenic Intergenic 38538 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 243.834 chr1 222790645 222791037 + 1.16667 NA Intergenic Intergenic -24198 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 213.5-30 chr7 57404449 57404675 + 1.16667 NA promoter-TSS (NR_120505) promoter-TSS (NR_120505) -205 NR_120505 100653233 Hs.127379 NR_120505 ENSG00000260653 LOC100653233 - uncharacterized LOC100653233 ncRNA 165.5-9 chr11 103539223 103539412 + 1.16667 NA Intergenic Tigger8|DNA|TcMar-Tigger -310589 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 293.001-2 chr5 93057404 93057772 + 1.16667 NA Intergenic Intergenic 513755 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 184-53 chr8 69032326 69032627 + 1.16667 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 71714 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 191.667-41 chr7 30115332 30115669 + 1.16667 NA intron (NM_001350973, intron 13 of 13) intron (NM_001350973, intron 13 of 13) -19486 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 279.667-25 chr8 111735954 111736307 + 1.16667 NA Intergenic (TCAT)n|Simple_repeat|Simple_repeat 359491 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 226.5-43 chrX 87584622 87584879 + 1.16667 NA intron (NM_057162, intron 1 of 10) L1MA1|LINE|L1 66948 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 305-6 chr11 77066538 77067131 + 1.16667 NA promoter-TSS (NM_004055) promoter-TSS (NM_004055) -137 NM_004055 726 Hs.248153 NM_004055 ENSG00000149260 CAPN5 ADNIV|HTRA3|VRNI|nCL-3 calpain 5 protein-coding 265.5-10 chr16 51813925 51814275 + 1.16667 NA Intergenic Intergenic 51581 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 229.334-3 chr12 96267545 96267790 + 1.16667 NA 3' UTR (NM_005230, exon 5 of 5) 3' UTR (NM_005230, exon 5 of 5) 12169 NM_001303511 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 269.834-2 chr3 190116749 190117113 + 1.16667 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 3966 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 201.333-16 chr14 100850908 100851261 + 1.16667 NA non-coding (NR_046473, exon 7 of 7) non-coding (NR_046473, exon 7 of 7) -1306 NR_030528 768222 NR_030528 ENSG00000211574 MIR770 MIRN770|hsa-mir-770 microRNA 770 ncRNA 282.834-8 chr22 27788770 27789167 + 1.16667 NA intron (NM_002430, intron 1 of 1) intron (NM_002430, intron 1 of 1) 12788 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 291.834-2 chr7 9160499 9160903 + 1.16667 NA Intergenic L1MA1|LINE|L1 -473569 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 228.334-14 chr9 84881638 84881948 + 1.16667 NA intron (NM_001018064, intron 13 of 17) intron (NM_001018064, intron 13 of 17) 175892 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 301.834-2 chr11 77418538 77418938 + 1.16667 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 55325 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 183.667-60 chr9 97981962 97982403 + 1.16667 NA Intergenic Intergenic -1159 NM_006401 10541 Hs.730654 NM_006401 ENSG00000136938 ANP32B APRIL|PHAPI2|SSP29 acidic nuclear phosphoprotein 32 family member B protein-coding 248.333-34 chr9 70419653 70420049 + 1.16667 NA Intergenic CpG -5194 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 281-23 chr5 114755640 114756105 + 1.16667 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 17541 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 233.667-22 chr4 48696857 48697203 + 1.16667 NA intron (NM_015030, intron 2 of 63) intron (NM_015030, intron 2 of 63) 83269 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 256.834-3 chr2 18753194 18753519 + 1.16667 NA Intergenic Intergenic -163776 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 193.5-19 chr17 12023213 12023522 + 1.16667 NA intron (NM_003010, intron 1 of 10) intron (NM_003010, intron 1 of 10) 2490 NM_003010 6416 Hs.514681 NM_003010 ENSG00000065559 MAP2K4 JNKK|JNKK1|MAPKK4|MEK4|MKK4|PRKMK4|SAPKK-1|SAPKK1|SEK1|SERK1|SKK1 mitogen-activated protein kinase kinase 4 protein-coding 193.167-16 chr2 53771731 53772047 + 1.16667 NA intron (NM_001008708, intron 1 of 2) intron (NM_001008708, intron 1 of 2) 4085 NM_001008708 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 233.667-39 chr9 128141988 128142303 + 1.16667 NA Intergenic Intergenic -7308 NM_005564 3934 Hs.204238 NM_005564 ENSG00000148346 LCN2 24p3|MSFI|NGAL|p25 lipocalin 2 protein-coding 247.834-4 chr6 133817450 133817699 + 1.16667 NA intron (NR_109982, intron 2 of 8) intron (NR_109982, intron 2 of 8) -3573 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 202-30 chr4 105681647 105681907 + 1.16667 NA TTS (NM_020395) TTS (NM_020395) 26912 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 236.834-3 chr12 65999330 65999693 + 1.16667 NA Intergenic Intergenic 24215 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 197-44 chr9 112219235 112219502 + 1.16667 NA 3' UTR (NM_005156, exon 15 of 15) 3' UTR (NM_005156, exon 15 of 15) -44071 NM_001282640 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 290.167-9 chr2 207769934 207770301 + 1.16667 NA promoter-TSS (NM_003468) promoter-TSS (NM_003468) -211 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 319.5-13 chr4 95095037 95095842 + 1.16667 NA intron (NM_001256794, intron 1 of 10) intron (NM_001256794, intron 1 of 10) 3948 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 313.167-17 chrX 68462914 68463444 + 1.16667 NA Intergenic MER41B|LTR|ERV1 -29684 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 164.334-3 chr3 180912424 180912672 + 1.16667 NA promoter-TSS (NM_001013439) promoter-TSS (NM_001013439) -122 NM_001013439 8087 Hs.478407 NM_005087 ENSG00000114416 FXR1 FXR1P FMR1 autosomal homolog 1 protein-coding 203.334-7 chr5 18231786 18232041 + 1.16667 NA Intergenic Intergenic 424639 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 343.5-7 chr17 50479274 50479871 + 1.16667 NA intron (NR_130911, intron 1 of 4) intron (NR_130911, intron 1 of 4) 712 NM_018346 55316 Hs.8033 NM_018346 ENSG00000136444 RSAD1 HemW radical S-adenosyl methionine domain containing 1 protein-coding 320.167-10 chr3 16079571 16080118 + 1.16667 NA Intergenic Intergenic -94836 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 276.5-3 chr14 24271207 24271706 + 1.16667 NA 5' UTR (NM_004581, exon 1 of 16).2 5' UTR (NM_004581, exon 1 of 16).2 171 NM_182836 5875 Hs.377992 NM_004581 ENSG00000100949 RABGGTA PTAR3 Rab geranylgeranyltransferase subunit alpha protein-coding 214.667 chr1 169802125 169802488 + 1.16667 NA intron (NM_001366772, intron 3 of 22) intron (NM_001366772, intron 3 of 22) 7266 NM_001366771 55732 Hs.443551 NM_018186 ENSG00000000460 C1orf112 - chromosome 1 open reading frame 112 protein-coding 273.5-22 chr9 89623764 89624156 + 1.16667 NA Intergenic Intergenic -15823 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 351.167-2 chr2 23320573 23321015 + 1.16667 NA Intergenic Intergenic -64385 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 349.167-4 chr16 55399200 55399721 + 1.16667 NA Intergenic Intergenic 62837 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 318.167-9 chr4 137819690 137820135 + 1.16667 NA Intergenic L1M1|LINE|L1 -269102 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 251.667-4 chr1 110034049 110034467 + 1.16667 NA promoter-TSS (NM_033088) promoter-TSS (NM_033088) -343 NR_073071 85369 Hs.584996 NM_033088 ENSG00000143093 STRIP1 FAM40A|FAR11A striatin interacting protein 1 protein-coding 237.834-11 chr9 115883939 115884166 + 1.16667 NA Intergenic MIR3|SINE|MIR 41155 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 283.667-19 chr8 113372515 113372767 + 1.16667 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 4511 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 244.667-31 chr7 17300907 17301261 + 1.16667 NA intron (NM_001621, intron 1 of 10) (TTATA)n|Simple_repeat|Simple_repeat 2432 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 295.667-16 chr5 123352863 123353254 + 1.16667 NA intron (NM_153223, intron 19 of 20) L1ME3A|LINE|L1 70534 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 194-38 chr7 66714814 66715345 + 1.16667 NA intron (NM_001367727, intron 4 of 11) (TCC)n|Simple_repeat|Simple_repeat -25654 NM_001287062 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 184-54 chr8 119389981 119390198 + 1.16667 NA Intergenic Intergenic -26357 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 187.5-27 chr4 36170577 36170822 + 1.16667 NA intron (NR_146894, intron 9 of 32) MIRc|SINE|MIR 73240 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 175.167-40 chr6 141345866 141346172 + 1.16667 NA Intergenic L1MCa|LINE|L1 662205 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 273.334-7 chr7 37760190 37760610 + 1.16667 NA Intergenic L1PA16|LINE|L1 76634 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 271.334-12 chr4 63582099 63582364 + 1.16667 NA Intergenic L1MC1|LINE|L1 827219 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 230.834 chr14 46998737 46999011 + 1.16667 NA intron (NM_001113498, intron 8 of 16) Tigger20a|DNA|TcMar-Tigger 344372 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 223.5-20 chr4 169620070 169620331 + 1.16667 NA promoter-TSS (NM_001243372) promoter-TSS (NM_001243372) -378 NM_001829 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 242-5 chr1 215686696 215686961 + 1.16667 NA intron (NM_206933, intron 61 of 71) intron (NM_206933, intron 61 of 71) 119524 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 225.667-26 chr21 22845815 22846219 + 1.16667 NA Intergenic LTR25-int|LTR|ERV1 -233267 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 306.834-11 chr6 11181766 11182050 + 1.16667 NA Intergenic L1ME1|LINE|L1 50760 NM_006403 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 207.333-4 chr1 119440723 119441122 + 1.16667 NA Intergenic Intergenic 25772 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 183.833-18 chr4 32889524 32889765 + 1.16667 NA Intergenic Intergenic 538606 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 355.167-5 chr22 29454966 29455338 + 1.16667 NA Intergenic AluJo|SINE|Alu -13023 NR_002727 10740 Hs.167750 NR_002727 RFPL1S NCRNA00006|RFPL1-AS|RFPL1-AS1|RFPL1AS RFPL1 antisense RNA 1 ncRNA 208.334-4 chr14 70740102 70740337 + 1.16667 NA intron (NM_033141, intron 6 of 12) intron (NM_033141, intron 6 of 12) 41521 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 178.667-44 chr8 119810053 119810216 + 1.16667 NA intron (NM_003184, intron 3 of 25) L1ME1|LINE|L1 22707 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 393-8 chr8 110130138 110130852 + 1.16667 NA Intergenic L1MB8|LINE|L1 -154724 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 248-13 chr11 104872515 104872930 + 1.16667 NA Intergenic Intergenic 25948 NM_001191016 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 260.333-9 chr2 69298038 69298419 + 1.16667 NA Intergenic Intergenic 88999 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 322.5-12 chr2 40244769 40245194 + 1.16667 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 185323 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 523-3 chr12 9797831 9798647 + 1.16667 NA Intergenic Intergenic -1813 NR_159359 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 187.834-11 chr7 136784806 136785295 + 1.16667 NA Intergenic Intergenic -83602 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 291.5-20 chr2 195448297 195448742 + 1.16667 NA Intergenic THE1D|LTR|ERVL-MaLR -208439 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 246.5-29 chr6 114848349 114848726 + 1.16667 NA Intergenic Intergenic -785660 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 234.834 chr1 30911566 30911787 + 1.16667 NA Intergenic Intergenic -2918 NM_014654 9672 Hs.158287 NM_014654 ENSG00000162512 SDC3 SDCN|SYND3 syndecan 3 protein-coding 315.167-11 chr9 35826203 35826688 + 1.16667 NA intron (NR_052026, intron 1 of 7) intron (NR_052026, intron 1 of 7) 2287 NM_001012446 392307 Hs.128075 NM_001012446 ENSG00000204930 FAM221B C9orf128 family with sequence similarity 221 member B protein-coding 255.5-36 chr8 41791994 41792642 + 1.16667 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 5304 NM_020477 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 270.334-7 chr18 8591037 8591441 + 1.16667 NA Intergenic AluSz|SINE|Alu -18206 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 350-15 chr5 118984542 118985030 + 1.16667 NA intron (NM_173666, intron 1 of 5) intron (NM_173666, intron 1 of 5) 3434 NM_001308081 285605 Hs.655891 NM_173666 ENSG00000169570 DTWD2 - DTW domain containing 2 protein-coding 213-37 chr7 10611842 10612195 + 1.16667 NA intron (NR_147499, intron 1 of 2) MLT2F|LTR|ERVL -90658 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 697.335 chr14 20305765 20306567 + 1.16667 NA promoter-TSS (NM_138376) promoter-TSS (NM_138376) -215 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 244.167-19 chr21 33024986 33025265 + 1.16667 NA promoter-TSS (NM_005806) promoter-TSS (NM_005806) -810 NM_005806 10215 Hs.176977 NM_005806 ENSG00000205927 OLIG2 BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19 oligodendrocyte transcription factor 2 protein-coding 297.667-20 chr5 29782987 29783527 + 1.16667 NA Intergenic Intergenic -97303 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 298-18 chr7 41109010 41109513 + 1.16667 NA intron (NR_110832, intron 2 of 5) intron (NR_110832, intron 2 of 5) 7657 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 455.334-2 chr11 81490957 81491920 + 1.16667 NA Intergenic Intergenic 399398 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 239.834-8 chr5 170235503 170235735 + 1.16667 NA intron (NR_131091, intron 3 of 3) L3|LINE|CR1 2613 NM_001305394 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 178.667-21 chr19 38300758 38300986 + 1.16667 NA Intergenic Intergenic -3379 NM_001317801 64073 Hs.631544 NM_022125 ENSG00000167644 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 288.501-5 chr5 7743414 7743751 + 1.16667 NA intron (NM_020546, intron 14 of 24) intron (NM_020546, intron 14 of 24) 107551 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 266.001 chr2 61541472 61541795 + 1.16667 NA Intergenic Intergenic -3277 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 260.001 chr16 12965375 12965752 + 1.16667 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 63965 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 245.334 chr1 63610177 63610575 + 1.16667 NA intron (NM_001172819, intron 1 of 10) intron (NM_001172819, intron 1 of 10) -12840 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 199.667-3 chr1 154761361 154761567 + 1.16667 NA intron (NM_001204087, intron 3 of 8) AluSz6|SINE|Alu 98412 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 295 chr1 107832627 107833080 + 1.16667 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -64370 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 204.834-8 chr2 156589732 156590040 + 1.16667 NA Intergenic Intergenic 153507 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 244.667-9 chr12 82685578 82685882 + 1.16667 NA Intergenic Intergenic -1176 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 304.167-12 chr9 138110962 138111251 + 1.16667 NA intron (NM_001243812, intron 38 of 45) L1ME1|LINE|L1 -39007 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 252.501 chr22 34800441 34800741 + 1.16667 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 197325 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 309.166-2 chr10 78367511 78368099 + 1.16667 NA Intergenic Intergenic 100463 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 175.667-26 chr2 65350389 65350669 + 1.16667 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) 16249 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 228.667-22 chr2 120026840 120027151 + 1.16667 NA intron (NM_001330307, intron 2 of 16) L1MB8|LINE|L1 13918 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 196.667-30 chr2 224541466 224541856 + 1.16667 NA intron (NM_001257197, intron 1 of 14) L1ME1|LINE|L1 28294 NM_001257198 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 217.834-3 chr6 34662971 34663257 + 1.16667 NA intron (NM_022758, intron 1 of 3) L1MB3|LINE|L1 -33040 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 250.167-2 chr1 95265253 95265706 + 1.16667 NA Intergenic Intergenic 31269 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 372.834-10 chr8 117169117 117169519 + 1.16667 NA intron (NM_173851, intron 6 of 7) MER85|DNA|PiggyBac 34323 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 328.833-8 chr22 34700083 34700535 + 1.16667 NA Intergenic Intergenic 297607 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 215-36 chr5 166812971 166813357 + 1.16667 NA Intergenic Intergenic 113206 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 279.667-16 chr21 33163515 33163980 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 6489 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 168.5-39 chr5 149037883 149038176 + 1.16667 NA intron (NM_024577, intron 8 of 16) intron (NM_024577, intron 8 of 16) 24380 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 440.333-3 chr17 46940987 46941515 + 1.16667 NA 3' UTR (NM_004287, exon 6 of 6) 3' UTR (NM_004287, exon 6 of 6) 18091 NM_001321133 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 327.5-16 chr22 22945101 22945443 + 1.16667 NA Intergenic L1M5|LINE|L1 57456 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 253.667-13 chr14 69131449 69131799 + 1.16667 NA intron (NM_003861, intron 1 of 8) intron (NM_003861, intron 1 of 8) 20975 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 343.501 chr10 97662710 97663082 + 1.16667 NA intron (NM_018425, intron 4 of 8) intron (NM_018425, intron 4 of 8) 22210 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 371.167-6 chr4 21769768 21770507 + 1.16667 NA intron (NM_147182, intron 1 of 8) L1PA8A|LINE|L1 -72442 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 318.167-3 chr10 80619754 80620252 + 1.16667 NA intron (NM_207372, intron 6 of 6) intron (NM_207372, intron 6 of 6) -29794 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 262-6 chr12 125179570 125179930 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -6636 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 169.834-8 chr4 114945622 114945791 + 1.16667 NA intron (NM_022569, intron 4 of 13) intron (NM_022569, intron 4 of 13) 167914 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 179.5-21 chr17 59014694 59014873 + 1.16667 NA intron (NR_148346, intron 21 of 23) intron (NR_148346, intron 21 of 23) 92097 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 302.667-10 chr5 152379574 152379941 + 1.16667 NA Intergenic Intergenic 25522 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 293 chr1 52078267 52078719 + 1.16667 NA intron (NM_001243767, intron 3 of 4) L2c|LINE|L2 22198 NM_152265 91408 Hs.429839 NM_152265 ENSG00000134717 BTF3L4 - basic transcription factor 3 like 4 protein-coding 272.334-5 chr3 111666880 111667301 + 1.16667 NA Intergenic Intergenic -7586 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 224.834-6 chr19 13850776 13851394 + 1.16667 NA Intergenic MIR|SINE|MIR -8167 NR_036515 284454 Hs.436426 NR_036515 LOC284454 - uncharacterized LOC284454 ncRNA 195.667-15 chr15 48374124 48374490 + 1.16667 NA Intergenic Intergenic 42110 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 321.667-10 chr7 37450287 37451015 + 1.16667 NA Intergenic L3|LINE|CR1 -1325 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 326.834-3 chr16 63179325 63179758 + 1.16667 NA Intergenic AluY|SINE|Alu -1143103 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 237-13 chr14 76232648 76233078 + 1.16667 NA Intergenic MER77|LTR|ERVL 78509 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 194.834-5 chr11 108735207 108735381 + 1.16667 NA intron (NM_004398, intron 13 of 17) L2a|LINE|L2 70225 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 185.667-43 chr8 89365961 89366446 + 1.16667 NA Intergenic Intergenic 391508 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 164.833-16 chr6 75816324 75816668 + 1.16667 NA intron (NM_001368139, intron 2 of 9) AluJo|SINE|Alu 67257 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 230.834-5 chr3 114362601 114362960 + 1.16667 NA intron (NR_038993, intron 4 of 8) intron (NR_038993, intron 4 of 8) 10969 NR_038993 100131117 Hs.122417 NR_038993 ENSG00000241560 ZBTB20-AS1 - ZBTB20 antisense RNA 1 ncRNA 274.834-8 chr8 51950219 51950721 + 1.16667 NA Intergenic L1MB2|LINE|L1 -51284 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 168.5-51 chr8 124167297 124167529 + 1.16667 NA intron (NR_103547, intron 1 of 4) L1ME4a|LINE|L1 4109 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 200.667-6 chr10 44595456 44595711 + 1.16667 NA Intergenic L1PA8|LINE|L1 -210486 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 590.167-2 chr13 103882841 103883633 + 1.16667 NA Intergenic Intergenic 458037 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 289.001-3 chr8 63262130 63262515 + 1.16667 NA Intergenic Intergenic 93319 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 309-17 chr3 41419292 41419595 + 1.16667 NA intron (NR_136342, intron 32 of 34) L2a|LINE|L2 219938 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 271.001 chr1 38030118 38030384 + 1.16667 NA Intergenic Intergenic 16542 NM_002699 5453 Hs.1837 NM_002699 ENSG00000185668 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 257.167-7 chr20 6826858 6827235 + 1.16667 NA Intergenic L2|LINE|L2 59360 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 285.167-9 chr2 109351182 109351589 + 1.16667 NA intron (NM_001099289, intron 2 of 9) intron (NM_001099289, intron 2 of 9) -37760 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 239.834-3 chr14 51827873 51828381 + 1.16667 NA Intergenic Intergenic -32485 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 195.834-6 chr4 54367215 54367439 + 1.16667 NA Intergenic Intergenic 34435 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 212.5-19 chr2 241296419 241296815 + 1.16667 NA intron (NM_005336, intron 1 of 27) intron (NM_005336, intron 1 of 27) -18570 NM_001349315 4735 Hs.721234 NM_004404 ENSG00000168385 SEPTIN2 DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|hNedd5 septin 2 protein-coding 220.667-36 chr7 42506912 42507168 + 1.16667 NA Intergenic L1MC4|LINE|L1 199407 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 266.667-7 chr14 71802511 71802782 + 1.16667 NA Intergenic Intergenic -129525 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 174.667-39 chr4 67580632 67580941 + 1.16667 NA intron (NM_012108, intron 4 of 8) intron (NM_012108, intron 4 of 8) 22059 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 224.5-31 chr4 60031369 60031622 + 1.16667 NA Intergenic L1MB3|LINE|L1 -891124 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 165.334-5 chr3 197934959 197935113 + 1.16667 NA intron (NM_001323030, intron 5 of 7) intron (NM_001323030, intron 5 of 7) 14889 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 235.334-4 chr2 173195987 173196283 + 1.16667 NA intron (NM_133646, intron 7 of 11) intron (NM_133646, intron 7 of 11) 85901 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 217.667-32 chr5 146716968 146717154 + 1.16667 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 161724 NR_073526 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 195.834-9 chr8 117278042 117278287 + 1.16667 NA Intergenic Intergenic 143169 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 278.667-23 chr4 26568633 26569029 + 1.16667 NA Intergenic Intergenic -15093 NM_001292054 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 263.001-2 chr3 192654990 192655263 + 1.16667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 72415 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 195.667-34 chr5 15021644 15021865 + 1.16667 NA Intergenic Intergenic -149976 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 191-24 chr17 76854090 76854341 + 1.16667 NA Intergenic AluJo|SINE|Alu -1951 NR_135283 283994 Hs.645372 NR_135283 ENSG00000267535 LINC00868 C17orf52 long intergenic non-protein coding RNA 868 ncRNA 271.5-36 chr6 61040215 61040535 + 1.16667 NA Intergenic SATR1|Satellite|Satellite -533755 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 339.5-5 chr15 23856185 23856591 + 1.16667 NA Intergenic Intergenic -118759 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 275.334-7 chr4 10008136 10008391 + 1.16667 NA intron (NM_001001290, intron 3 of 12) intron (NM_001001290, intron 3 of 12) 13234 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 192.001-2 chr5 99766163 99766347 + 1.16667 NA Intergenic Intergenic 232265 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 187.334-9 chr6 35576307 35576500 + 1.16667 NA intron (NM_001145775, intron 11 of 11) AluJb|SINE|Alu -63507 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 341.833-3 chr3 78980513 78981203 + 1.16667 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 38601 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 192.834 chr2 37838099 37838375 + 1.16667 NA intron (NR_110012, intron 2 of 3) intron (NR_110012, intron 2 of 3) -8526 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 306.834-13 chrX 92283306 92283760 + 1.16667 NA intron (NM_032968, intron 4 of 6) intron (NM_032968, intron 4 of 6) 448072 NM_032968 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 325.167-12 chr6 169720440 169720824 + 1.16667 NA intron (NM_018288, intron 2 of 11) L1MB3|LINE|L1 3378 NM_133325 55274 Hs.435933 NM_018288 ENSG00000130024 PHF10 BAF45A|XAP135 PHD finger protein 10 protein-coding 226.001-2 chr6 44214712 44215035 + 1.16667 NA Intergenic MIR1_Amn|SINE|MIR -2053 NM_001315494 101929726 Hs.438979 NM_001315494 ENSG00000262179 MYMX MINION|hMINION myomixer, myoblast fusion factor protein-coding 218.667-12 chr17 49557355 49557644 + 1.16667 NA intron (NR_103773, intron 1 of 2) L2a|LINE|L2 16565 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 166-46 chr20 55947777 55947992 + 1.16667 NA Intergenic Intergenic 57635 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 180.5 chr1 41287393 41287585 + 1.16667 NA Intergenic Intergenic -45183 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 296.834-6 chr2 59922202 59922478 + 1.16667 NA Intergenic Intergenic 460696 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 207.833-11 chr19 32555780 32556197 + 1.16667 NA Intergenic AluJr|SINE|Alu -25202 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 187.667-28 chr2 47174737 47175044 + 1.16667 NA promoter-TSS (NM_001305626) promoter-TSS (NM_001305626) -683 NM_001305626 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 363.667-7 chr17 47941320 47941770 + 1.16667 NA promoter-TSS (NM_018129) promoter-TSS (NM_018129) -26 NM_018129 55163 Hs.631742 NM_018129 ENSG00000108439 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 315.001-5 chr3 44252062 44252400 + 1.16667 NA intron (NM_001145030, intron 2 of 19) intron (NM_001145030, intron 2 of 19) 10345 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 193-13 chr15 57696015 57696560 + 1.16667 NA intron (NR_104368, intron 12 of 13) intron (NR_104368, intron 12 of 13) -10234 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 164-57 chr8 125372148 125372591 + 1.16667 NA Intergenic Intergenic -57989 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 225.834-7 chr11 105713289 105713668 + 1.16667 NA intron (NR_046356, intron 2 of 16) L1ME4c|LINE|L1 102772 NM_001112812 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 249.834-5 chr12 54360276 54360651 + 1.16667 NA intron (NR_120487, intron 1 of 3) MIR3|SINE|MIR 4023 NM_020370 53831 Hs.306199 NM_020370 ENSG00000139572 GPR84 EX33|GPCR4 G protein-coupled receptor 84 protein-coding 334.667-2 chr11 6531052 6531650 + 1.16667 NA intron (NM_144666, intron 12 of 42) L2b|LINE|L2 34055 NM_144666 144132 Hs.720080 NM_144666 ENSG00000179532 DNHD1 C11orf47|CCDC35|DHCD1|DNHD1L dynein heavy chain domain 1 protein-coding 193.667-9 chr1 247683345 247683588 + 1.16667 NA Intergenic Intergenic -10425 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 250.667 chr1 55808725 55809111 + 1.16667 NA Intergenic L1M1|LINE|L1 136045 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 169.167-12 chr19 40973421 40973793 + 1.16667 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -17675 NM_000767 1555 Hs.1360 NM_000767 ENSG00000197408 CYP2B6 CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450 cytochrome P450 family 2 subfamily B member 6 protein-coding 203.501 chr14 73308392 73308784 + 1.16667 NA intron (NM_001005745, intron 5 of 10) L2a|LINE|L2 -62587 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 274.5-12 chr22 17501838 17502302 + 1.16667 NA intron (NM_001290046, intron 5 of 18) intron (NM_001290046, intron 5 of 18) -61369 NM_001303484 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 209.834-11 chr9 87241983 87242224 + 1.16667 NA Intergenic Intergenic 93459 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 216.667-34 chr4 58625044 58625286 + 1.16667 NA Intergenic L1PA12|LINE|L1 -88837 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 488.668 chrX 131673678 131674337 + 1.16667 NA Intergenic L2b|LINE|L2 129933 NM_001004486 347468 Hs.553711 NM_001004486 ENSG00000171054 OR13H1 ORX1 olfactory receptor family 13 subfamily H member 1 protein-coding 166.334 chr11 98572570 98572799 + 1.16667 NA Intergenic MER44A|DNA|TcMar-Tigger -448265 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 270.667-11 chr2 73284445 73284779 + 1.16667 NA promoter-TSS (NM_001080410) promoter-TSS (NM_001080410) -134 NM_001080410 150726 Hs.23158 NM_001080410 ENSG00000163013 FBXO41 FBX41 F-box protein 41 protein-coding 290-17 chr7 48236975 48237352 + 1.16667 NA intron (NM_152701, intron 8 of 61) LTR8B|LTR|ERV1 65705 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 225.667-6 chr11 30917453 30917817 + 1.16667 NA intron (NM_001367979, intron 25 of 38) intron (NM_001367979, intron 25 of 38) 75051 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 163.167-18 chr17 63588031 63588315 + 1.16667 NA intron (NR_073585, intron 6 of 7) intron (NR_073585, intron 6 of 7) -12722 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 235.167-13 chr16 77110349 77110705 + 1.16667 NA Intergenic Intergenic -80663 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 332-16 chr20 51863020 51863431 + 1.16667 NA promoter-TSS (NR_110016) promoter-TSS (NR_110016) -312 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 183.333-65 chr8 136257569 136257841 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -273093 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 203.333-11 chr11 37799724 37800063 + 1.16667 NA Intergenic L1PA16|LINE|L1 -138708 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 173.334-8 chr5 36215812 36216032 + 1.16667 NA intron (NM_001085411, intron 6 of 11) L1MA4A|LINE|L1 25469 NM_001287340 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 406.501-3 chr7 102889814 102890593 + 1.16667 NA intron (NR_105043, intron 12 of 20) intron (NR_105043, intron 12 of 20) -22797 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 218.833-27 chr8 117330904 117331280 + 1.16667 NA Intergenic L2c|LINE|L2 -189621 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 258.833-7 chr17 67519824 67520209 + 1.16667 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -48431 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 252.334 chr1 188679404 188679721 + 1.16667 NA Intergenic Intergenic 1235934 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 273.167-5 chr16 48542282 48542562 + 1.16667 NA 3' UTR (NM_153029, exon 7 of 7) 3' UTR (NM_153029, exon 7 of 7) 67758 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 250.667-37 chr6 161374900 161375419 + 1.16667 NA intron (NM_004562, intron 10 of 11) intron (NM_004562, intron 10 of 11) -95818 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 193.501 chr16 84103568 84103734 + 1.16667 NA intron (NM_003791, intron 1 of 22) intron (NM_003791, intron 1 of 22) 13291 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 232.833-26 chr6 39234418 39234801 + 1.16667 NA Intergenic Intergenic -5134 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 305.167-9 chr3 109548374 109548877 + 1.16667 NA Intergenic LTR16|LTR|ERVL -54203 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 314.5-13 chr3 151037334 151037791 + 1.16667 NA intron (NR_024066, intron 1 of 5) Charlie29a|DNA|hAT-Charlie -49236 NM_053002 116931 Hs.744234 NM_053002 ENSG00000144893 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12L protein-coding 175.5-16 chr13 84589040 84589512 + 1.16667 NA intron (NR_046871, intron 6 of 6) intron (NR_046871, intron 6 of 6) -194378 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 273.167-14 chr7 92134479 92134803 + 1.16667 NA promoter-TSS (NM_000786) promoter-TSS (NM_000786) 78 NR_122110 613126 Hs.662663 NR_122109 ENSG00000188693 CYP51A1-AS1 LRRD1-AS1 CYP51A1 antisense RNA 1 ncRNA 267.5-28 chr2 237446577 237446994 + 1.16667 NA Intergenic Intergenic -32578 NM_004369 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 223.5-13 chr18 77200993 77201306 + 1.16667 NA Intergenic Intergenic -48699 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 228.501 chr15 71861153 71861515 + 1.16667 NA intron (NM_006901, intron 33 of 41) intron (NM_006901, intron 33 of 41) 50780 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 182.333-16 chr2 171418956 171419269 + 1.16667 NA intron (NM_001321157, intron 1 of 10) L1MC3|LINE|L1 14878 NM_001321159 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 228.001-2 chr11 40129231 40129444 + 1.16667 NA intron (NR_047674, intron 1 of 1) intron (NR_047674, intron 1 of 1) 163793 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 281.334-12 chr6 51599897 51600232 + 1.16667 NA Intergenic L1PB1|LINE|L1 -21806 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 288.334-9 chr2 217365202 217365560 + 1.16667 NA intron (NR_026597, intron 8 of 12) intron (NR_026597, intron 8 of 12) 82648 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 211.167-31 chr9 74772357 74772641 + 1.16667 NA intron (NM_017662, intron 24 of 38) L1MA4|LINE|L1 114848 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 349.5-10 chr3 99443591 99443947 + 1.16667 NA Intergenic L2a|LINE|L2 -194825 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 303.334-8 chr2 24511632 24512028 + 1.16667 NA intron (NM_001362952, intron 1 of 23) L1MB5|LINE|L1 19953 NM_001362954 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 190-44 chr5 129777799 129778224 + 1.16667 NA Intergenic L1MA4|LINE|L1 29917 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 212.834-9 chr5 114358329 114358569 + 1.16667 NA Intergenic Intergenic -3621 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 256.667-10 chr14 50497981 50498203 + 1.16667 NA intron (NM_198794, intron 3 of 31) intron (NM_198794, intron 3 of 31) 34477 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 200.667-47 chr6 77195045 77195273 + 1.16667 NA Intergenic Intergenic 268863 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 319.167-2 chr10 62480014 62480458 + 1.16667 NA TTS (NM_199450) TTS (NM_199450) -40212 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 220.667-39 chr9 99642542 99642901 + 1.16667 NA intron (NR_109802, intron 3 of 6) AluY|SINE|Alu 177168 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 343.834-3 chr20 44049844 44050215 + 1.16667 NA intron (NM_001098797, intron 3 of 8) L1PA10|LINE|L1 104133 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 271.501-4 chr6 42217212 42217595 + 1.16667 NA intron (NM_018141, intron 1 of 6) intron (NM_018141, intron 1 of 6) 458 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 229.667-3 chr1 179368707 179369106 + 1.16667 NA exon (NM_144696, exon 3 of 26) exon (NM_144696, exon 3 of 26) 2862 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 220.667-20 chr2 28850044 28850247 + 1.16667 NA 3' UTR (NM_017910, exon 7 of 7) 3' UTR (NM_017910, exon 7 of 7) 20164 NM_017910 55006 Hs.468026 NM_017910 ENSG00000171103 TRMT61B - tRNA methyltransferase 61B protein-coding 259.334-4 chr3 135513940 135514258 + 1.16667 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat -451629 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 186-25 chr2 176038617 176038821 + 1.16667 NA Intergenic L2c|LINE|L2 -35899 NR_130941 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 201.834-7 chr3 151145981 151146240 + 1.16667 NA intron (NM_053002, intron 4 of 42) MER5A|DNA|hAT-Charlie 57106 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 188.334-12 chr9 129803031 129803212 + 1.16667 NA promoter-TSS (NR_134113) promoter-TSS (NR_134113) -22 NR_133948 27348 Hs.252682 NM_014506 ENSG00000136816 TOR1B DQ1 torsin family 1 member B protein-coding 363.833-9 chr8 139339386 139340002 + 1.16667 NA Intergenic L1PA2|LINE|L1 363429 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 250.501-5 chr6 65981323 65981673 + 1.16667 NA Intergenic Intergenic 193619 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 236.667-3 chr1 155044816 155045131 + 1.16667 NA TTS (NR_040772) TTS (NR_040772) 6192 NR_040772 100505666 Hs.657533 NR_040772 DCST1-AS1 - DCST1 antisense RNA 1 ncRNA 216.833-6 chr11 31397047 31397415 + 1.16667 NA intron (NM_181706, intron 2 of 4) intron (NM_181706, intron 2 of 4) 27371 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 257.834-8 chr4 89784657 89785091 + 1.16667 NA intron (NM_001146054, intron 4 of 5) intron (NM_001146054, intron 4 of 5) -51527 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 289.667-13 chr2 98269162 98269655 + 1.16667 NA non-coding (NR_144296, exon 22 of 29) non-coding (NR_144296, exon 22 of 29) -76747 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 416.167 chr2 29032479 29032977 + 1.16667 NA intron (NM_001321538, intron 13 of 18) L1ME4a|LINE|L1 41795 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 PCARE C2orf71|RP54 photoreceptor cilium actin regulator protein-coding 215.167-5 chr10 53600670 53600995 + 1.16667 NA Intergenic Intergenic -829132 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 407.334-6 chr7 151303381 151303861 + 1.16667 NA Intergenic CpG -26472 NM_003078 6604 Hs.647067 NM_003078 ENSG00000082014 SMARCD3 BAF60C|CRACD3|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 307.334-8 chr6 100742159 100742482 + 1.16667 NA intron (NM_006828, intron 10 of 41) L1PA11|LINE|L1 139009 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 419-2 chr12 74413949 74414587 + 1.16667 NA Intergenic Intergenic -121637 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 246-23 chr3 119240020 119240366 + 1.16667 NA intron (NM_003778, intron 1 of 7) intron (NM_003778, intron 1 of 7) 685 NM_212543 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 265.667-10 chr14 70028529 70028874 + 1.16667 NA intron (NM_022137, intron 11 of 11) MIRb|SINE|MIR 50568 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 261-10 chr2 121083917 121084476 + 1.16667 NA Intergenic Intergenic 201006 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 250.667-16 chr19 16715558 16715853 + 1.16667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -4142 NM_001007525 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 302.334-5 chr13 75640269 75640598 + 1.16667 NA intron (NM_001306080, intron 1 of 30) L2c|LINE|L2 4103 NM_001306080 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 249.833-14 chr21 46569793 46570145 + 1.16667 NA TTS (NM_001353942) TTS (NM_001353942) 35113 NM_006272 6285 Hs.422181 NM_006272 ENSG00000160307 S100B NEF|S100|S100-B|S100beta S100 calcium binding protein B protein-coding 322.834-3 chr2 72366378 72366847 + 1.16667 NA intron (NR_135774, intron 17 of 19) L1MEc|LINE|L1 -218750 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 173.167-15 chr17 29580272 29580530 + 1.16667 NA intron (NM_001085454, intron 7 of 20) intron (NM_001085454, intron 7 of 20) 9247 NM_001085454 28964 Hs.514051 NM_014030 ENSG00000108262 GIT1 - GIT ArfGAP 1 protein-coding 340.334 chr1 52688431 52688796 + 1.16667 NA intron (NM_023077, intron 2 of 2) FLAM_C|SINE|Alu 9734 NM_023077 65260 Hs.349905 NM_023077 ENSG00000162377 COA7 C1orf163|RESA1|SCAN3|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 230.334-8 chr5 72826693 72826937 + 1.16667 NA intron (NM_001364292, intron 1 of 24) L1ME3G|LINE|L1 10154 NM_001364295 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 178.5-14 chr14 43483209 43483456 + 1.16667 NA Intergenic MER67C|LTR|ERV1 1023951 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 211.5-13 chr12 98451073 98451419 + 1.16667 NA Intergenic AluJb|SINE|Alu 5899 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 182.667-12 chr11 93669010 93669385 + 1.16667 NA intron (NM_033395, intron 4 of 29) intron (NM_033395, intron 4 of 29) 7515 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 209.334-8 chr9 104957426 104957623 + 1.16667 NA Intergenic Intergenic -29369 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 241.834-7 chr2 208459708 208460089 + 1.16667 NA exon (NM_001309516, exon 9 of 13) exon (NM_001309516, exon 9 of 13) 53068 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 230.667-12 chr17 45096148 45096507 + 1.16667 NA intron (NM_021079, intron 5 of 11) intron (NM_021079, intron 5 of 11) 18106 NR_106842 102465470 NR_106842 ENSG00000277249 MIR6784 hsa-mir-6784 microRNA 6784 ncRNA 185.167-29 chr8 105518331 105518595 + 1.16667 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 198920 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 243.5-12 chr2 24971718 24972173 + 1.16667 NA promoter-TSS (NR_034113) promoter-TSS (NR_034113) 10 NM_016544 51277 Hs.434993 NM_016544 ENSG00000115137 DNAJC27 RBJ|RabJS DnaJ heat shock protein family (Hsp40) member C27 protein-coding 217.334-5 chr2 33626315 33626652 + 1.16667 NA Intergenic Intergenic -27121 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 223.834-7 chr18 69539064 69539372 + 1.16667 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) 69287 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 246.167-5 chr11 80457222 80457585 + 1.16667 NA Intergenic Intergenic 305400 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 200.334-8 chr3 114420079 114420308 + 1.16667 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -33400 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 207.334-9 chr7 24921861 24922148 + 1.16667 NA intron (NM_015550, intron 1 of 22) L2b|LINE|L2 -29383 NM_145321 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 229.834-6 chr6 127100759 127101025 + 1.16667 NA Intergenic Intergenic -17779 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 333.001-4 chr3 132715308 132715766 + 1.16667 NA intron (NR_037804, intron 4 of 44) intron (NR_037804, intron 4 of 44) -6213 NR_152743 348808 Hs.586111 NR_002811 ENSG00000248724 NPHP3-AS1 NCRNA00119 NPHP3 antisense RNA 1 ncRNA 274.001 chr8 27316098 27316511 + 1.16667 NA intron (NM_173174, intron 3 of 35) intron (NM_173174, intron 3 of 35) 4826 NM_173174 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 231.833-2 chr11 117226398 117226883 + 1.16667 NA intron (NM_004716, intron 5 of 16) intron (NM_004716, intron 5 of 16) 5433 NM_004716 9159 Hs.648612 NM_004716 ENSG00000160613 PCSK7 LPC|PC7|PC8|SPC7 proprotein convertase subtilisin/kexin type 7 protein-coding 351.334-9 chr8 81370297 81371194 + 1.16667 NA Intergenic L2a|LINE|L2 76694 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 237.167-16 chr4 41505104 41505456 + 1.16667 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -32877 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 202.001 chr2 82063486 82063696 + 1.16667 NA Intergenic Intergenic -596645 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 294.333 chr1 244741215 244741656 + 1.16667 NA Intergenic AluSx|SINE|Alu 88309 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 272.834-13 chr9 13552584 13553028 + 1.16667 NA Intergenic L1ME1|LINE|L1 -121477 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 350.5-3 chr14 74622537 74623090 + 1.16667 NA Intergenic AluJb|SINE|Alu -10576 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 281.833-15 chr7 26061585 26062355 + 1.16667 NA Intergenic L2a|LINE|L2 -90228 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 559.5-2 chr2 128736142 128737014 + 1.16667 NA Intergenic Intergenic -128022 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 213.667-35 chr4 43835194 43835567 + 1.16667 NA Intergenic MER57B1|LTR|ERV1 -181481 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 242.667-8 chr13 110398403 110398730 + 1.16667 NA intron (NM_001846, intron 4 of 47) AluSz|SINE|Alu 57608 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 183.001 chr5 28258811 28258969 + 1.16667 NA Intergenic Intergenic 28775 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 180.834-2 chr19 17599789 17600370 + 1.16667 NA Intergenic AluY|SINE|Alu 44430 NM_024656 79709 Hs.418795 NM_024656 ENSG00000130309 COLGALT1 BSVD3|ColGalT 1|GLT25D1 collagen beta(1-O)galactosyltransferase 1 protein-coding 218.334-8 chr3 62870210 62870576 + 1.16667 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 5023 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 248.834-6 chr2 39500760 39501001 + 1.16667 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 63464 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 261.167-2 chr10 5283433 5283715 + 1.16667 NA Intergenic MIR3|SINE|MIR -12338 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 194.167-29 chr5 41857063 41857416 + 1.16667 NA intron (NR_157114, intron 3 of 15) L2|LINE|L2 -12791 NR_046635 100874002 Hs.375537 NR_046635 ENSG00000248668 OXCT1-AS1 - OXCT1 antisense RNA 1 ncRNA 258.167-6 chr12 31518673 31518990 + 1.16667 NA intron (NM_001308339, intron 1 of 22) intron (NM_001308339, intron 1 of 22) -71092 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 345.167-10 chr7 155738407 155738882 + 1.16667 NA intron (NM_053043, intron 11 of 17) intron (NM_053043, intron 11 of 17) 70428 NR_132318 6469 Hs.164537 NM_000193 ENSG00000164690 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS sonic hedgehog signaling molecule protein-coding 260 chr10 6541518 6542102 + 1.16667 NA intron (NM_001323265, intron 1 of 17) intron (NM_001323265, intron 1 of 17) 38466 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 308.5-10 chr15 61445110 61445530 + 1.16667 NA Intergenic L1MEb|LINE|L1 -216018 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 285.167 chr1 164354853 164355302 + 1.16667 NA Intergenic L1MA9|LINE|L1 -204283 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 268.167-6 chr12 109266712 109267005 + 1.16667 NA 3' UTR (NM_001093, exon 53 of 53) 3' UTR (NM_001093, exon 53 of 53) 42426 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 171.333-3 chr1 177617011 177617349 + 1.16667 NA Intergenic Intergenic -83344 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 169-13 chr12 80269920 80270120 + 1.16667 NA intron (NM_001368062, intron 27 of 62) intron (NM_001368062, intron 27 of 62) 60567 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 411.167-4 chr5 126600447 126601382 + 1.16667 NA promoter-TSS (NM_032177) promoter-TSS (NM_032177) -33 NM_032177 51808 Hs.555731 NM_032177 ENSG00000164902 PHAX RNUXA phosphorylated adaptor for RNA export protein-coding 221-25 chr4 35818140 35818398 + 1.16667 NA Intergenic Intergenic 425670 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 180.833-9 chr16 4974189 4974530 + 1.16667 NA intron (NM_014692, intron 2 of 15) AluJo|SINE|Alu 16029 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 175-29 chr2 115770155 115770411 + 1.16667 NA intron (NM_001321912, intron 14 of 25) intron (NM_001321912, intron 14 of 25) 426468 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 373.001-3 chr9 100380560 100380949 + 1.16667 NA Intergenic AluSx1|SINE|Alu -27812 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 359-10 chr3 167744907 167745422 + 1.16667 NA intron (NM_005025, intron 1 of 8) L1MB7|LINE|L1 9441 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 240.167-21 chr8 3738510 3738965 + 1.16667 NA intron (NM_033225, intron 6 of 69) intron (NM_033225, intron 6 of 69) -1010286 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 236.5-23 chr20 58654296 58654621 + 1.16667 NA intron (NM_001134772, intron 1 of 7) intron (NM_001134772, intron 1 of 7) 3175 NM_001204868 8675 Hs.307913 NM_003763 ENSG00000124222 STX16 SYN16 syntaxin 16 protein-coding 282.167-3 chr11 68729633 68729907 + 1.16667 NA intron (NM_004923, intron 6 of 9) Tigger1|DNA|TcMar-Tigger 21750 NM_004923 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 220.5-20 chr18 67882049 67882422 + 1.16667 NA intron (NR_033921, intron 4 of 4) L1ME3|LINE|L1 -67413 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 211.834-9 chr6 163814614 163814900 + 1.16667 NA Intergenic Intergenic -143273 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 204.5-4 chr10 18526834 18527044 + 1.16667 NA intron (NM_201593, intron 9 of 13) MIR|SINE|MIR 124648 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 201.334-4 chr12 28165586 28165829 + 1.16667 NA Intergenic Intergenic -24749 NM_001352086 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 185.667 chr1 34727451 34727701 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -27471 NM_005268 2709 Hs.198249 NM_005268 ENSG00000189280 GJB5 CX31.1 gap junction protein beta 5 protein-coding 198.167-9 chr12 116686850 116687054 + 1.16667 NA Intergenic Intergenic 51117 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 177-24 chr3 31666687 31666848 + 1.16667 NA intron (NM_001174060, intron 9 of 10) MER44A|DNA|TcMar-Tigger -37446 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 301.334-10 chr8 104770996 104771550 + 1.16667 NA Intergenic LTR8B|LTR|ERV1 -182249 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 189-22 chr16 82562852 82563031 + 1.16667 NA Intergenic L3|LINE|CR1 -64028 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 311.5-8 chr20 17939002 17939448 + 1.16667 NA Intergenic Intergenic 23721 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 263-9 chr3 32467392 32467812 + 1.16667 NA Intergenic MER102b|DNA|hAT-Charlie 35250 NM_017801 54918 Hs.380627 NM_017801 ENSG00000091317 CMTM6 CKLFSF6|PRO2219 CKLF like MARVEL transmembrane domain containing 6 protein-coding 282.166-4 chr3 115985686 115986262 + 1.16667 NA intron (NM_001318915, intron 3 of 8) MLT1F|LTR|ERVL-MaLR -80848 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 321.167-10 chr2 18883966 18884543 + 1.16667 NA Intergenic L1MA4|LINE|L1 142717 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 345.667-12 chr8 80844580 80845195 + 1.16667 NA intron (NM_001033723, intron 1 of 8) FLAM_C|SINE|Alu 29581 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 248.334-8 chr20 17679884 17680532 + 1.16667 NA intron (NM_001365613, intron 1 of 24) intron (NM_001365613, intron 1 of 24) 2034 NM_001365613 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 202-16 chr2 16309257 16309511 + 1.16667 NA Intergenic L1ME1|LINE|L1 258957 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 307.166-2 chr14 52045424 52046018 + 1.16667 NA intron (NM_007361, intron 5 of 21) intron (NM_007361, intron 5 of 21) 23338 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 176.5 chr1 43123953 43124325 + 1.16667 NA Intergenic HAL1|LINE|L1 -23765 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 174.834-4 chr11 125091317 125091589 + 1.16667 NA TTS (NM_198277) TTS (NM_198277) 20173 NM_001258239 219854 Hs.7626 NM_001080546 ENSG00000150433 TMEM218 - transmembrane protein 218 protein-coding 185-28 chr19 55454880 55455108 + 1.16667 NA exon (NM_024710, exon 5 of 6) exon (NM_024710, exon 5 of 6) 6648 NM_001136202 79763 Hs.467306 NM_024710 ENSG00000063241 ISOC2 - isochorismatase domain containing 2 protein-coding 252.167-10 chr2 141006191 141006465 + 1.16667 NA intron (NM_018557, intron 14 of 90) L1MA5A|LINE|L1 -419643 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 202-40 chr9 34989041 34989470 + 1.16667 NA promoter-TSS (NM_001135004) promoter-TSS (NM_001135004) 124 NR_109756 101926900 Hs.545814 NR_109756 ENSG00000281491 DNAJB5-DT DNAJB5-AS1 DNAJB5 divergent transcript ncRNA 171.5-32 chr3 42590470 42590849 + 1.16667 NA promoter-TSS (NM_001370300) promoter-TSS (NM_001370300) -201 NM_001370300 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 211.167-32 chrX 56250967 56251348 + 1.16667 NA intron (NM_001324100, intron 2 of 3) intron (NM_001324100, intron 2 of 3) 17999 NR_136704 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 230.334-5 chr2 192731564 192731839 + 1.16667 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -18144 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 203.334-4 chr2 15868516 15868986 + 1.16667 NA Intergenic L1ME3B|LINE|L1 -51648 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 188.834-7 chr16 68395322 68395722 + 1.16667 NA intron (NM_018667, intron 1 of 8) intron (NM_018667, intron 1 of 8) 52986 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 192.167-21 chr21 17430544 17430827 + 1.16667 NA Intergenic AluSx1|SINE|Alu -8205 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 197.5-27 chr4 116593316 116593545 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 293705 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 284.334-7 chr5 31886778 31887096 + 1.16667 NA intron (NM_178140, intron 2 of 24) AluSx1|SINE|Alu 49222 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 260.167-16 chr3 78660574 78660877 + 1.16667 NA intron (NM_002941, intron 16 of 30) intron (NM_002941, intron 16 of 30) 358734 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 260-27 chr8 110821748 110822284 + 1.16667 NA Intergenic LTR13|LTR|ERVK 205417 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 191.334-2 chr12 18857496 18857826 + 1.16667 NA Intergenic L2a|LINE|L2 119542 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 203.333-64 chr9 2655591 2655913 + 1.16667 NA 3' UTR (NM_001322226, exon 17 of 17) 3' UTR (NM_001322226, exon 17 of 17) -33379 NR_015375 401491 Hs.416043 NR_015375 ENSG00000236404 VLDLR-AS1 linc-VLDLR|lincRNA-VLDLR VLDLR antisense RNA 1 ncRNA 249.167 chr1 225911481 225911908 + 1.16667 NA Intergenic AluSc|SINE|Alu 10448 NR_106799 102466270 NR_106799 ENSG00000284519 MIR6741 hsa-mir-6741 microRNA 6741 ncRNA 332.833-14 chr9 79134430 79134904 + 1.16667 NA TTS (NR_109771) TTS (NR_109771) 10999 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 334.334-2 chr10 89861663 89862157 + 1.16667 NA intron (NR_149080, intron 1 of 1) intron (NR_149080, intron 1 of 1) 8004 NR_149080 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 296.5-21 chr6 137761116 137761558 + 1.16667 NA Intergenic Intergenic -22300 NR_121619 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 313.667-6 chr17 10395704 10396099 + 1.16667 NA intron (NM_002472, intron 33 of 39) intron (NM_002472, intron 33 of 39) 12769 NR_125367 100128560 Hs.661174 NR_125367 MYHAS - myosin heavy chain gene cluster antisense RNA ncRNA 220-15 chr19 41152469 41152788 + 1.16667 NA Intergenic AluJb|SINE|Alu 38196 NM_000774 1572 Hs.558318 NM_000774 ENSG00000197446 CYP2F1 C2F1|CYP2F|CYPIIF1 cytochrome P450 family 2 subfamily F member 1 protein-coding 262.334-9 chr17 29921065 29921349 + 1.16667 NA intron (NM_001282129, intron 1 of 15) MIRb|SINE|MIR -8696 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 249.334-3 chr13 53928857 53929268 + 1.16667 NA Intergenic Intergenic 113643 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 293.667-23 chr7 116908531 116908885 + 1.16667 NA intron (NM_006136, intron 6 of 9) intron (NM_006136, intron 6 of 9) -44793 NM_018412 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 163.333-7 chr10 119761258 119761490 + 1.16667 NA intron (NM_014937, intron 2 of 19) intron (NM_014937, intron 2 of 19) 35324 NM_014937 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 230.667-13 chr19 1437335 1437704 + 1.16667 NA promoter-TSS (NM_001018) promoter-TSS (NM_001018) -845 NM_001018 6209 Hs.406683 NM_001018 ENSG00000115268 RPS15 RIG|S15 ribosomal protein S15 protein-coding 229.667-17 chr2 35726307 35726690 + 1.16667 NA Intergenic L1MEg|LINE|L1 255093 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 199.5-3 chr1 209206472 209206727 + 1.16667 NA Intergenic Intergenic -118857 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 310.834 chr11 133193413 133193792 + 1.16667 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -249834 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 266.667-21 chr7 16030006 16030384 + 1.16667 NA Intergenic Intergenic -180291 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 166.334-8 chr7 113705034 113705221 + 1.16667 NA Intergenic MLT2C2|LTR|ERVL 213882 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 239.834-9 chr6 56236841 56237173 + 1.16667 NA intron (NM_001318751, intron 1 of 30) intron (NM_001318751, intron 1 of 30) 10573 NR_134851 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 310.667-3 chr10 110007922 110008306 + 1.16667 NA 5' UTR (NM_016824, exon 1 of 15) 5' UTR (NM_016824, exon 1 of 15) 130 NM_016824 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 304.334-9 chr4 52103129 52103472 + 1.16667 NA Intergenic Intergenic 51996 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 262-22 chr5 46431567 46431887 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -735347 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 271.167-2 chr10 118446520 118446965 + 1.16667 NA Intergenic AluJo|SINE|Alu 89634 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 263.167 chr1 7645611 7645933 + 1.16667 NA intron (NM_001349608, intron 6 of 21) intron (NM_001349608, intron 6 of 21) -23958 NM_001349614 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 378.167-7 chr4 145734953 145735374 + 1.16667 NA Intergenic Intergenic 54959 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 303.167-3 chr3 160684958 160685386 + 1.16667 NA Intergenic L1MC4|LINE|L1 8012 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 184.834-5 chr13 31967112 31967344 + 1.16667 NA Intergenic L1M4c|LINE|L1 64411 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 338.834-4 chr9 29565800 29566375 + 1.16667 NA Intergenic Intergenic -352486 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 177.167-7 chr11 18240534 18240807 + 1.16667 NA intron (NM_001127380, intron 3 of 3) L1PB4|LINE|L1 -3868 NM_006512 6291 Hs.1955 NM_006512 ENSG00000148965 SAA4 C-SAA|CSAA serum amyloid A4, constitutive protein-coding 216.167-21 chr2 99681158 99681383 + 1.16667 NA intron (NM_001025108, intron 10 of 23) MIRc|SINE|MIR -191253 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 320.334-3 chr14 64998397 64998778 + 1.16667 NA intron (NM_002028, intron 1 of 11) MER65A|LTR|ERV1 11692 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 195.334-5 chr14 68082485 68082721 + 1.16667 NA intron (NM_133509, intron 7 of 10) L1ME4b|LINE|L1 259011 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 221.667-34 chr4 63103864 63104385 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -942359 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 283.834-10 chr8 88816496 88816884 + 1.16667 NA Intergenic Intergenic -489207 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 267.667-14 chr3 160873255 160873616 + 1.16667 NA intron (NR_134243, intron 1 of 5) intron (NR_134243, intron 1 of 5) 2837 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 217.834-6 chrX 149131875 149132155 + 1.16667 NA Intergenic Intergenic 373291 NM_000202 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 183.667-39 chr3 120710437 120710740 + 1.16667 NA intron (NM_173825, intron 2 of 7) L2c|LINE|L2 -28349 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 263-16 chr8 111280878 111281246 + 1.16667 NA Intergenic Intergenic -44859 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 374.5-11 chr8 71651254 71651847 + 1.16667 NA Intergenic Intergenic -103456 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 242.001 chr18 36572480 36572722 + 1.16667 NA intron (NM_001281740, intron 5 of 28) intron (NM_001281740, intron 5 of 28) 90817 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 174.834-8 chr21 23394702 23394877 + 1.16667 NA Intergenic Intergenic -9954 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 354.5-4 chr14 55271651 55272107 + 1.16667 NA promoter-TSS (NM_152231) promoter-TSS (NM_152231) -275 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 243.167-8 chr16 81033840 81034140 + 1.16667 NA TTS (NM_001100625) TTS (NM_001100625) -1852 NM_015251 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 229.5-10 chr14 70125360 70125659 + 1.16667 NA intron (NM_033262, intron 2 of 7) L1PB4|LINE|L1 -45292 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 217.5 chr1 152820675 152821032 + 1.16667 NA Intergenic Intergenic -6620 NM_178348 353131 Hs.534645 NM_178348 ENSG00000186844 LCE1A LEP1 late cornified envelope 1A protein-coding 246.333-31 chr5 92715069 92715422 + 1.16667 NA Intergenic Intergenic 856098 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 228.333-20 chr3 154018040 154018324 + 1.16667 NA Intergenic MLT1E2|LTR|ERVL-MaLR -102821 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 217.5-15 chr4 61175636 61175902 + 1.16667 NA Intergenic Intergenic -25461 NM_001371344 215.834-8 chr22 34723990 34724219 + 1.16667 NA Intergenic Intergenic 273812 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 234.334-2 chr11 72183182 72183826 + 1.16667 NA Intergenic Intergenic -6205 NM_016724 2348 Hs.73769 NM_000802 ENSG00000110195 FOLR1 FBP|FOLR|FRalpha folate receptor alpha protein-coding 323-25 chr9 78991826 78992281 + 1.16667 NA Intergenic Intergenic 153613 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 246.167-12 chr16 80084425 80084726 + 1.16667 NA Intergenic Intergenic 289326 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 245.833-3 chr10 16966108 16966484 + 1.16667 NA intron (NM_001081, intron 31 of 66) intron (NM_001081, intron 31 of 66) -148842 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 197.667-41 chr5 94559812 94560132 + 1.16667 NA intron (NM_001145678, intron 2 of 20) LTR49|LTR|ERV1 58632 NM_173665 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 288.5-17 chr20 58409497 58409809 + 1.16667 NA intron (NR_036633, intron 1 of 3) intron (NR_036633, intron 1 of 3) 20424 NM_001195677 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 191.667-31 chr22 31664399 31664703 + 1.16667 NA Intergenic L1MB5|LINE|L1 -1987 NM_001326411 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 181-11 chr14 45708015 45708232 + 1.16667 NA intron (NR_146547, intron 1 of 1) intron (NR_146547, intron 1 of 1) 7479 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 198.667-9 chr14 21263371 21263601 + 1.16667 NA intron (NM_031314, intron 1 of 8) intron (NM_031314, intron 1 of 8) 5993 NM_031314 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 264-29 chr7 16829774 16830225 + 1.16667 NA Intergenic L1M1|LINE|L1 -25000 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 334-2 chr10 13099203 13099775 + 1.16667 NA promoter-TSS (NM_021980) promoter-TSS (NM_021980) 500 NM_001282658 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 448.5 chr10 21521535 21522291 + 1.16667 NA intron (NM_207371, intron 2 of 3) intron (NM_207371, intron 2 of 3) 3769 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 183-15 chr12 90642383 90642649 + 1.16667 NA Intergenic MamRep1527|LTR|LTR -275507 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 240.5-4 chr12 111304679 111305116 + 1.16667 NA TTS (NR_106818) TTS (NR_106818) 755 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 446.667-4 chr5 97183190 97183868 + 1.16667 NA promoter-TSS (NM_001159749) promoter-TSS (NM_001159749) -282 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 230.833-13 chr21 29340227 29340633 + 1.16667 NA intron (NR_027655, intron 4 of 7) intron (NR_027655, intron 4 of 7) -32071 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 213.501-2 chr3 94982103 94982312 + 1.16667 NA intron (NR_015400, intron 4 of 7) L1MC3|LINE|L1 43944 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 224.167-12 chr17 77551856 77552324 + 1.16667 NA intron (NR_040050, intron 1 of 1) AluSx|SINE|Alu 5149 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 322.667-15 chr20 59032780 59033336 + 1.16667 NA promoter-TSS (NM_006886) promoter-TSS (NM_006886) -723 NM_006886 514 Hs.177530 NM_006886 ENSG00000124172 ATP5F1E ATP5E|ATPE|MC5DN3 ATP synthase F1 subunit epsilon protein-coding 226-2 chr1 79199546 79199787 + 1.16667 NA Intergenic Intergenic -192936 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 183.333-53 chr5 111590318 111590515 + 1.16667 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -77819 NM_001308056 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 225.167-29 chr7 29189303 29189501 + 1.16667 NA intron (NM_001371264, intron 1 of 15) intron (NM_001371264, intron 1 of 15) 655 NM_001371267 187.5-31 chr5 80690081 80690316 + 1.16667 NA intron (NM_002439, intron 8 of 23) AluJr|SINE|Alu -35215 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 210.167-14 chr15 61515149 61515365 + 1.16667 NA Intergenic MamSINE1|SINE|tRNA-RTE -214661 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 205.834-9 chr9 72293906 72294238 + 1.16667 NA Intergenic MIRc|SINE|MIR -11364 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 172-36 chr3 198000801 198000948 + 1.16667 NA intron (NM_033029, intron 11 of 15) MER112|DNA|hAT-Charlie 38593 NR_046669 100873947 Hs.637166 NR_046669 ENSG00000232832 LMLN-AS1 - LMLN antisense RNA 1 ncRNA 362.667-3 chr14 60366917 60367268 + 1.16667 NA Intergenic Intergenic 43896 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 174-39 chr5 86415427 86415664 + 1.16667 NA Intergenic Intergenic 133101 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 351.5-15 chr7 93233950 93234440 + 1.16667 NA intron (NM_001257998, intron 1 of 28) Tigger8|DNA|TcMar-Tigger 1829 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 231.833-13 chr22 49468833 49469087 + 1.16667 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 74506 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 271.334-8 chr2 109306792 109307153 + 1.16667 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) 6653 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 235-29 chr6 120770456 120770876 + 1.16667 NA Intergenic Intergenic 563814 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 168.667 chr1 185853878 185854236 + 1.16667 NA intron (NM_031935, intron 2 of 106) intron (NM_031935, intron 2 of 106) 119666 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 225.667-17 chr2 18509584 18509935 + 1.16667 NA Intergenic L1ME3B|LINE|L1 50894 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 199.667-4 chr1 168107896 168108197 + 1.16667 NA intron (NM_001267611, intron 1 of 5) MSTB1|LTR|ERVL-MaLR 28390 NM_001267612 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 334.5-18 chr6 7848821 7849189 + 1.16667 NA intron (NM_001718, intron 2 of 6) intron (NM_001718, intron 2 of 6) 61072 NM_001145549 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 244.501 chr1 117480297 117480565 + 1.16667 NA intron (NM_006699, intron 8 of 12) L1ME1|LINE|L1 112982 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 214.334-3 chr12 27273571 27273911 + 1.16667 NA intron (NM_015000, intron 1 of 13) intron (NM_015000, intron 1 of 13) 29455 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 241-5 chr14 66916569 66916962 + 1.16667 NA intron (NM_001024218, intron 6 of 21) MER77B|LTR|ERVL -272675 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 169-18 chr15 63048924 63049153 + 1.16667 NA non-coding (NR_147233, exon 1 of 2) non-coding (NR_147233, exon 1 of 2) 349 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 210.834-9 chr8 126827682 126828279 + 1.16667 NA Intergenic Intergenic -185174 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 201.334-6 chr16 81313743 81313990 + 1.16667 NA Intergenic Intergenic -1100 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 309.334-6 chr3 82799316 82799745 + 1.16667 NA Intergenic L2a|LINE|L2 813388 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 242.5-31 chr3 81585221 81585661 + 1.16667 NA intron (NM_000158, intron 10 of 15) intron (NM_000158, intron 10 of 15) 176204 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 188.167-36 chr8 120098631 120098940 + 1.16667 NA Intergenic L1PA15|LINE|L1 -26317 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 197.834-10 chr5 154421814 154422003 + 1.16667 NA TTS (NM_198321) TTS (NM_198321) 23914 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 244.834-2 chr3 134345317 134345697 + 1.16667 NA Intergenic Intergenic 22355 NR_106885 102466744 NR_106885 ENSG00000277723 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 260.667-28 chr2 73352338 73352604 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -33287 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 316.333-6 chr12 62437241 62437623 + 1.16667 NA Intergenic L1M2|LINE|L1 -29394 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 207-8 chr12 18275948 18276219 + 1.16667 NA intron (NM_001288774, intron 1 of 32) intron (NM_001288774, intron 1 of 32) 14543 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 202.5-26 chr18 1599447 1599683 + 1.16667 NA Intergenic Intergenic -239936 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 188.5-24 chr2 222707788 222707980 + 1.16667 NA intron (NM_058165, intron 5 of 5) intron (NM_058165, intron 5 of 5) 36226 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 320.667-6 chr11 119168708 119169134 + 1.16667 NA 5' UTR (NM_024618, exon 1 of 10) 5' UTR (NM_024618, exon 1 of 10) 196 NM_001282143 79671 Hs.524082 NM_024618 ENSG00000160703 NLRX1 CLR11.3|DLNB26|NOD26|NOD5|NOD9 NLR family member X1 protein-coding 169.834-5 chr15 60323405 60323651 + 1.16667 NA Intergenic Intergenic 74458 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 301.668 chr2 41213210 41213543 + 1.16667 NA Intergenic Intergenic -664179 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 305.667-17 chr7 4299148 4299453 + 1.16667 NA Intergenic Intergenic -164463 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 221.834 chr1 67961651 67961889 + 1.16667 NA intron (NR_040077, intron 1 of 9) MER45R|DNA|hAT-Tip100 89861 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 230.833-11 chr2 238362706 238363152 + 1.16667 NA intron (NM_001139490, intron 13 of 14) intron (NM_001139490, intron 13 of 14) 42385 NM_001139490 26146 Hs.631898 NM_015650 ENSG00000204104 TRAF3IP1 IFT54|MIP-T3|MIPT3|SLSN9 TRAF3 interacting protein 1 protein-coding 192.667-5 chr10 104209836 104210029 + 1.16667 NA intron (NM_025145, intron 5 of 37) MER2B|DNA|TcMar-Tigger 8951 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 246.5-17 chr17 8436959 8437311 + 1.16667 NA intron (NM_030808, intron 1 of 8) intron (NM_030808, intron 1 of 8) 1251 NM_030808 81565 Hs.372123 NM_030808 ENSG00000166579 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1 like 1 protein-coding 307-8 chr19 267173 267607 + 1.16667 NA Intergenic CpG 23749 NM_177543 8612 Hs.465506 NM_003712 ENSG00000141934 PLPP2 LPP2|PAP-2c|PAP2-g|PPAP2C phospholipid phosphatase 2 protein-coding 276.334-12 chrX 110853469 110853782 + 1.16667 NA Intergenic Intergenic -57808 NM_001143981 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 237-2 chr1 79145583 79145909 + 1.16667 NA Intergenic Intergenic -139016 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 221.167-32 chrX 83845632 83845943 + 1.16667 NA Intergenic L1PA15-16|LINE|L1 -15339 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 294.167-6 chr2 9287400 9287734 + 1.16667 NA intron (NM_003887, intron 2 of 27) intron (NM_003887, intron 2 of 27) 80755 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 280.5-18 chr6 34722449 34722741 + 1.16667 NA Intergenic MIRb|SINE|MIR 25650 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 219.167-16 chr7 25718264 25718739 + 1.16667 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 32531 NR_157814 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 233.333-17 chr2 80217240 80217625 + 1.16667 NA intron (NM_001282598, intron 7 of 17) MIRc|SINE|MIR 87320 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 203.667-39 chr5 168207783 168208082 + 1.16667 NA intron (NM_001368145, intron 18 of 26) intron (NM_001368145, intron 18 of 26) 24440 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 200.834 chr1 73171350 73171762 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL -134614 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 236-21 chr7 3608316 3608660 + 1.16667 NA intron (NM_152744, intron 1 of 44) Charlie1a|DNA|hAT-Charlie 307236 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 260.501 chr12 71441436 71441680 + 1.16667 NA intron (NR_110596, intron 1 of 19) intron (NR_110596, intron 1 of 19) 1760 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 304-14 chr18 66272523 66273085 + 1.16667 NA Intergenic Intergenic 331286 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 223.5-2 chr1 18104647 18104927 + 1.16667 NA Intergenic Intergenic -3011 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 189.334-4 chr18 64358740 64359247 + 1.16667 NA intron (NR_033881, intron 5 of 9) L1PA16|LINE|L1 -98938 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 221.167-21 chr5 30722224 30722547 + 1.16667 NA Intergenic Intergenic -471301 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 190.667-45 chr5 77560050 77560246 + 1.16667 NA Intergenic Intergenic -67832 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 191.5-3 chr1 188171203 188171529 + 1.16667 NA Intergenic Intergenic 727738 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 255.834-2 chr11 36238925 36239159 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie 50382 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 342.334-2 chr10 17848208 17848521 + 1.16667 NA intron (NM_002438, intron 6 of 29) intron (NM_002438, intron 6 of 29) 3257 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 231.5-36 chr8 53659446 53659744 + 1.16667 NA Intergenic Intergenic -135630 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 196.167-7 chr12 18066111 18066455 + 1.16667 NA Intergenic Intergenic 23910 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 221.667-30 chr22 30089676 30089973 + 1.16667 NA intron (NM_001329457, intron 2 of 11) L1MB4|LINE|L1 9360 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 270-45 chrX 11381319 11381683 + 1.16667 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) 46317 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 370.334-5 chr2 150553939 150554336 + 1.16667 NA intron (NR_110241, intron 5 of 5) intron (NR_110241, intron 5 of 5) 18084 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 289.167-6 chr11 82531523 82532098 + 1.16667 NA Intergenic L1PA16|LINE|L1 -127897 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 341.167-10 chr3 177840159 177840660 + 1.16667 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 23544 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 179.334-2 chr1 214211097 214211456 + 1.16667 NA Intergenic Intergenic -69883 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 293.001 chr15 48283376 48283779 + 1.16667 NA intron (NM_001184832, intron 20 of 26) intron (NM_001184832, intron 20 of 26) -47518 NM_001330286 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 201.334-2 chr1 95078285 95078568 + 1.16667 NA Intergenic MER3|DNA|hAT-Charlie -5475 NM_001305242 199857 Hs.408927 NM_144988 ENSG00000172339 ALG14 CMS15 ALG14 UDP-N-acetylglucosaminyltransferase subunit protein-coding 219.5-34 chr7 98196916 98197207 + 1.16667 NA intron (NM_014916, intron 11 of 13) intron (NM_014916, intron 11 of 13) -15193 NM_177455 168620 Hs.511979 NM_177455 ENSG00000180535 BHLHA15 BHLHB8|MIST1 basic helix-loop-helix family member a15 protein-coding 181.334-6 chr2 201750516 201750754 + 1.16667 NA intron (NM_020919, intron 7 of 33) L1ME4a|LINE|L1 30298 NM_020919 57679 Hs.471096 NM_020919 ENSG00000003393 ALS2 ALS2CR6|ALSJ|IAHSP|PLSJ alsin Rho guanine nucleotide exchange factor ALS2 protein-coding 218.167-11 chr18 7389374 7389861 + 1.16667 NA Intergenic L1MC5a|LINE|L1 71389 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 254-29 chr9 72486332 72486698 + 1.16667 NA Intergenic Intergenic -35286 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 198.5-4 chr1 143721377 143721590 + 1.16667 NA Intergenic LTR56|LTR|ERV1 8087 NR_004421 6060 NR_004421 ENSG00000207389 RNU1-4 HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F RNA, U1 small nuclear 4 snRNA 176-26 chr3 110531736 110532107 + 1.16667 NA Intergenic Zaphod3|DNA|hAT-Tip100 538038 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 274.5-22 chr5 83470215 83470664 + 1.16667 NA Intergenic Intergenic -1235 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 181-19 chr17 58844641 58844883 + 1.16667 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 88893 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 283.667-18 chr8 4426337 4426803 + 1.16667 NA intron (NM_033225, intron 2 of 69) (TA)n|Simple_repeat|Simple_repeat 568344 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 257-17 chr18 70464378 70464876 + 1.16667 NA Intergenic Intergenic -80036 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 219.167-9 chr19 50149863 50150144 + 1.16667 NA Intergenic LTR47B2|LTR|ERVL -9683 NR_024243 100170227 Hs.717309 NR_024243 SNAR-D - small NF90 (ILF3) associated RNA D snRNA 251.5-21 chr5 84291866 84292204 + 1.16667 NA intron (NM_001278642, intron 1 of 9) MER3|DNA|hAT-Charlie 92832 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 188.5-35 chr5 113824273 113824589 + 1.16667 NA Intergenic Intergenic 310737 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 298.834-6 chrX 73092934 73093276 + 1.16667 NA Intergenic L1PB2|LINE|L1 12938 NR_110398 101928345 Hs.584657 NR_110398 ENSG00000226725 PABPC1L2B-AS1 - PABPC1L2B antisense RNA 1 (head to head) ncRNA 290.167 chr1 153465674 153466248 + 1.16667 NA Intergenic Intergenic -5310 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 186.834-4 chr22 26343878 26344103 + 1.16667 NA intron (NM_001184776, intron 10 of 14) MER117|DNA|hAT-Charlie -85270 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 220.667-30 chr5 68220686 68221062 + 1.16667 NA intron (NM_181523, intron 1 of 15) intron (NM_181523, intron 1 of 15) 5118 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 202.833-21 chr4 169476481 169476815 + 1.16667 NA intron (NM_001199400, intron 23 of 32) L2a|LINE|L2 135935 NM_001199399 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 261.167-22 chr8 114235878 114236263 + 1.16667 NA Intergenic Intergenic -799131 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 275-27 chr6 154932419 154932827 + 1.16667 NA Intergenic Intergenic 79263 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 199.334-2 chr14 65709454 65709845 + 1.16667 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 238547 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 308.167-5 chr14 104976051 104976644 + 1.16667 NA intron (NM_138420, intron 1 of 6) intron (NM_138420, intron 1 of 6) 2027 NM_138420 113146 Hs.441783 NM_138420 ENSG00000185567 AHNAK2 C14orf78 AHNAK nucleoprotein 2 protein-coding 173.667-33 chr22 39286842 39287121 + 1.16667 NA Intergenic Intergenic 26930 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 183.5-41 chr5 151270235 151270461 + 1.16667 NA TTS (NM_000405) TTS (NM_000405) 17163 NM_001167607 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 260.667-3 chr1 43755230 43755479 + 1.16667 NA intron (NM_001270465, intron 2 of 7) L1ME1|LINE|L1 -28011 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 218.667-31 chr5 76656923 76657304 + 1.16667 NA intron (NM_006633, intron 20 of 35) intron (NM_006633, intron 20 of 35) -33710 NM_004101 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 182.833-26 chr5 9543694 9543972 + 1.16667 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 2242 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 297.334-5 chr13 104089336 104089752 + 1.16667 NA Intergenic Intergenic 664344 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 255-25 chr4 92325204 92325521 + 1.16667 NA intron (NM_001286838, intron 1 of 14) MIRb|SINE|MIR 20963 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 204-3 chr1 169363478 169363734 + 1.16667 NA intron (NR_104229, intron 1 of 12) L2a|LINE|L2 4191 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 260.167-25 chr8 125340819 125341098 + 1.16667 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -89400 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 428.667-3 chr20 52897248 52898012 + 1.16667 NA Intergenic Intergenic -74728 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 169.167-5 chr1 177655092 177655368 + 1.16667 NA Intergenic MER41C|LTR|ERV1 -45294 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 255-26 chr4 150243095 150243481 + 1.16667 NA intron (NM_001040260, intron 12 of 15) intron (NM_001040260, intron 12 of 15) 164843 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 263.667-10 chr15 94168834 94169247 + 1.16667 NA Intergenic Intergenic -61102 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 185.834-11 chr7 39585037 39585236 + 1.16667 NA intron (NM_001282446, intron 2 of 2) LTR32|LTR|ERVL 18732 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 305.167-8 chr22 28097413 28097787 + 1.16667 NA intron (NM_001145418, intron 10 of 22) intron (NM_001145418, intron 10 of 22) -176988 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 271-4 chr10 67764851 67765242 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -68851 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 192.667-14 chr2 14570974 14571266 + 1.16667 NA Intergenic Intergenic -61597 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 228.667-37 chr5 38929374 38929769 + 1.16667 NA intron (NM_003999, intron 15 of 17) L1M5|LINE|L1 83559 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 255.001 chr2 28276220 28276609 + 1.16667 NA intron (NM_199193, intron 11 of 13) intron (NM_199193, intron 11 of 13) 34045 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 175.167-20 chr17 69702528 69702774 + 1.16667 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 108664 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 412.334-5 chr2 46315273 46315933 + 1.16667 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 18196 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 318.333-6 chr3 80189570 80190146 + 1.16667 NA Intergenic L2|LINE|L2 -421860 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 266.5-9 chr14 42598322 42598693 + 1.16667 NA Intergenic L1M5|LINE|L1 991651 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 209.834-6 chr3 8189508 8189716 + 1.16667 NA Intergenic L1MA3|LINE|L1 -173305 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 182.333-30 chr9 131055790 131056087 + 1.16667 NA intron (NM_006059, intron 11 of 27) AluJr|SINE|Alu -40538 NM_001185096 83543 Hs.4944 NM_031426 ENSG00000126878 AIF1L C9orf58|IBA2 allograft inflammatory factor 1 like protein-coding 274.834-4 chr4 47820261 47820558 + 1.16667 NA intron (NM_006587, intron 1 of 21) L1MEd|LINE|L1 -10936 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 432.667-6 chr20 45971989 45972633 + 1.16667 NA promoter-TSS (NM_022095) promoter-TSS (NM_022095) -108 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 358.833-4 chr17 56185623 56186215 + 1.16667 NA intron (NM_001365758, intron 2 of 20) intron (NM_001365758, intron 2 of 20) 32444 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 189.834-4 chr7 77396487 77396756 + 1.16667 NA intron (NR_146937, intron 5 of 31) intron (NR_146937, intron 5 of 31) -18577 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 256.667-13 chr17 33289658 33290164 + 1.16667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 3077 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 239.667-39 chr6 161750142 161750457 + 1.16667 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 279322 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 168.667-28 chr3 61575025 61575312 + 1.16667 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 13597 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 199-37 chr5 26960399 26960674 + 1.16667 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 78050 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 315.167-3 chr10 110643137 110643637 + 1.16667 NA promoter-TSS (NM_001134363) promoter-TSS (NM_001134363) -949 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 343.667-18 chrX 19152934 19153385 + 1.16667 NA Intergenic Intergenic -30522 NM_001184836 10149 Hs.146978 NM_005756 ENSG00000173698 ADGRG2 CBAVDX|EDDM6|GPR64|HE6|TM7LN2 adhesion G protein-coupled receptor G2 protein-coding 247.5-18 chr19 50976937 50977168 + 1.16667 NA 3' UTR (NM_005046, exon 6 of 6) 3' UTR (NM_005046, exon 6 of 6) 6763 NM_139277 5650 Hs.151254 NM_005046 ENSG00000169035 KLK7 PRSS6|SCCE|hK7 kallikrein related peptidase 7 protein-coding 240.167-3 chr1 99167754 99167975 + 1.16667 NA Intergenic Intergenic -96428 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 220.5-31 chr3 72997502 72998134 + 1.16667 NA intron (NM_001318025, intron 1 of 7) MER5A|DNA|hAT-Charlie 1007 NM_001318028 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 325.001-2 chr4 48157951 48158306 + 1.16667 NA intron (NM_003215, intron 8 of 17) intron (NM_003215, intron 8 of 17) -23878 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 218.5-5 chr10 74832255 74832462 + 1.16667 NA intron (NM_001370142, intron 1 of 16) AluJo|SINE|Alu 5758 NM_001370132 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 323-23 chr8 102297973 102298450 + 1.16667 NA intron (NM_001282873, intron 26 of 58) intron (NM_001282873, intron 26 of 58) 58760 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 254.334-5 chr3 133140427 133140661 + 1.16667 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 15723 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 173.5-49 chr7 16914617 16914783 + 1.16667 NA Intergenic L1MA4|LINE|L1 -32717 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 382.167-8 chr3 134444039 134444610 + 1.16667 NA Intergenic L1ME1|LINE|L1 6497 NR_039951 100616281 NR_039951 ENSG00000284561 MIR4788 - microRNA 4788 ncRNA 327.834-2 chr11 111806060 111806869 + 1.16667 NA intron (NR_147984, intron 14 of 15) L2-3_Crp|LINE|L2 -40075 NM_002716 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 257.834-7 chr3 190765430 190765961 + 1.16667 NA Intergenic AluSz|SINE|Alu 96999 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 325.001 chr1 94067843 94068175 + 1.16667 NA intron (NM_000350, intron 11 of 49) intron (NM_000350, intron 11 of 49) 53139 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 176.167-8 chr11 122788942 122789126 + 1.16667 NA intron (NM_001363365, intron 5 of 13) intron (NM_001363365, intron 5 of 13) -49466 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 294.834-2 chr15 42354937 42355403 + 1.16667 NA Intergenic Intergenic -4330 NM_173087 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 194.5-49 chr9 70638336 70638628 + 1.16667 NA intron (NM_001366143, intron 11 of 25) MIRc|SINE|MIR 171602 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 447.833-2 chr11 23164690 23165393 + 1.16667 NA Intergenic MLT1F1|LTR|ERVL-MaLR 254149 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 219.834-5 chr1 201983265 201983469 + 1.16667 NA promoter-TSS (NM_001319182) promoter-TSS (NM_001319182) 6 NM_001319182 6051 Hs.497391 NM_020216 ENSG00000176393 RNPEP AP-B|APB arginyl aminopeptidase protein-coding 224-38 chr5 2481851 2482404 + 1.16667 NA Intergenic L1M4|LINE|L1 -169926 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 209.333-19 chr2 23879175 23879458 + 1.16667 NA intron (NR_125717, intron 7 of 28) L1ME3A|LINE|L1 47807 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 216.5-31 chr3 62561582 62561889 + 1.16667 NA intron (NM_003716, intron 9 of 29) intron (NM_003716, intron 9 of 29) -188185 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 214.334-10 chr8 54171999 54172238 + 1.16667 NA Intergenic Intergenic 36877 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 295.667-14 chr3 71555060 71555452 + 1.16667 NA intron (NR_146142, intron 2 of 19) BLACKJACK|DNA|hAT-Blackjack -11699 NM_001244816 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 566.334 chr12 30844383 30845438 + 1.16667 NA Intergenic AluSp|SINE|Alu 49229 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 170.5-29 chr3 42074087 42074341 + 1.16667 NA Intergenic MIRb|SINE|MIR -12986 NR_146089 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 180.667-2 chr1 36048839 36049046 + 1.16667 NA intron (NM_177422, intron 15 of 16) AluJo|SINE|Alu -35152 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 166.167-41 chrX 81898651 81898808 + 1.16667 NA Intergenic Intergenic 696627 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 434-8 chr2 68250944 68251661 + 1.16667 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 1230 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 235.834-12 chr9 89218350 89218579 + 1.16667 NA Intergenic Intergenic -39646 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 321.333-18 chr9 107954202 107954772 + 1.16667 NA Intergenic Intergenic -464718 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 347.668 chr5 134986603 134986955 + 1.16667 NA intron (NM_178019, intron 2 of 7) L1MB4|LINE|L1 18872 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 190.667-43 chr5 4453875 4454109 + 1.16667 NA Intergenic Intergenic -319489 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 195-40 chr6 53364996 53365210 + 1.16667 NA Intergenic L1MB4|LINE|L1 -15924 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 180.833-8 chr15 68783780 68784053 + 1.16667 NA intron (NM_006305, intron 4 of 6) intron (NM_006305, intron 4 of 6) 18009 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 333.501 chr16 22188524 22189058 + 1.16667 NA intron (NM_001365288, intron 11 of 11) intron (NM_001365288, intron 11 of 11) -17487 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K CaMKIII|HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 226.334 chr1 69298778 69298993 + 1.16667 NA Intergenic L1PA13|LINE|L1 -134370 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 220.334-2 chr10 48519038 48519327 + 1.16667 NA intron (NR_144642, intron 3 of 9) intron (NR_144642, intron 3 of 9) -7593 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 208.667-3 chr1 187656238 187656509 + 1.16667 NA Intergenic Intergenic 212745 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 238.167-19 chr3 27681096 27681322 + 1.16667 NA Intergenic Intergenic 41114 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 229.833-15 chr21 32426235 32426659 + 1.16667 NA intron (NM_001320744, intron 1 of 5) intron (NM_001320744, intron 1 of 5) 13741 NM_001286556 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 174.167-21 chr2 188562561 188562775 + 1.16667 NA intron (NM_016315, intron 7 of 11) L1ME2|LINE|L1 227455 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 170.167 chr1 26548942 26549199 + 1.16667 NA intron (NM_002953, intron 4 of 21) intron (NM_002953, intron 4 of 21) 3228 NM_001006665 6195 Hs.149957 NM_002953 ENSG00000117676 RPS6KA1 HU-1|MAPKAPK1A|RSK|RSK1|p90Rsk ribosomal protein S6 kinase A1 protein-coding 298.5-21 chr9 68503139 68503510 + 1.16667 NA intron (NM_021965, intron 10 of 10) MER47A|DNA|TcMar-Tigger 37543 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 230.167-13 chr4 33243493 33243830 + 1.16667 NA Intergenic L1MC5a|LINE|L1 796232 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 382.334-6 chr7 101688196 101688886 + 1.16667 NA Intergenic CpG -59245 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 253.333-40 chr9 16825534 16825949 + 1.16667 NA intron (NM_017637, intron 1 of 6) intron (NM_017637, intron 1 of 6) 44929 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 267.5-43 chrX 66166970 66167344 + 1.16667 NA promoter-TSS (NM_001367234) promoter-TSS (NM_001367234) -593 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 291.501-2 chr8 115409621 115409897 + 1.16667 NA 3' UTR (NM_001282903, exon 7 of 7) 3' UTR (NM_001282903, exon 7 of 7) 258254 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 435.333 chr2 225668487 225669074 + 1.16667 NA intron (NM_001371273, intron 7 of 7) intron (NM_001371273, intron 7 of 7) 267894 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 207.333-49 chr8 33244184 33244411 + 1.16667 NA Intergenic Intergenic 228849 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 361-6 chr11 40951995 40952559 + 1.16667 NA intron (NM_001258419, intron 1 of 6) MIRb|SINE|MIR 507359 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 310.334-5 chr5 75918271 75918740 + 1.16667 NA Intergenic Intergenic -164878 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 344.668 chr1 66913058 66913359 + 1.16667 NA intron (NM_024763, intron 1 of 16) MER4-int|LTR|ERV1 11648 NM_207014 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 197.167-35 chr6 47582990 47583343 + 1.16667 NA intron (NM_012120, intron 11 of 17) L1MC1|LINE|L1 -73306 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 304.667-3 chr10 68921047 68921350 + 1.16667 NA intron (NM_024045, intron 8 of 14) L1MC5|LINE|L1 19883 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 287.834-5 chr4 140372730 140372978 + 1.16667 NA promoter-TSS (NM_001153552) promoter-TSS (NM_001153552) 538 NR_033939 100129858 Hs.660477 NR_033939 ENSG00000196951 SCOC-AS1 - SCOC antisense RNA 1 ncRNA 307.167-5 chr10 97759581 97759919 + 1.16667 NA 3' UTR (NM_001002262, exon 12 of 12) 3' UTR (NM_001002262, exon 12 of 12) 12249 NM_003015 6425 Hs.279565 NM_003015 ENSG00000120057 SFRP5 SARP3 secreted frizzled related protein 5 protein-coding 440.501 chr6 130321399 130322314 + 1.16667 NA intron (NM_001258275, intron 1 of 13) intron (NM_001258275, intron 1 of 13) 44012 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 451.668 chr5 178279655 178280133 + 1.16667 NA intron (NM_173465, intron 5 of 28) L2a|LINE|L2 -47072 NR_103510 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 229.5-12 chr14 86015947 86016169 + 1.16667 NA intron (NR_110155, intron 1 of 3) L1MA5|LINE|L1 81380 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 234.834-5 chr2 129867912 129868238 + 1.16667 NA intron (NR_149127, intron 3 of 5) intron (NR_149127, intron 3 of 5) 9416 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 187.667-26 chr19 41873084 41873279 + 1.16667 NA TTS (NM_001022) TTS (NM_001022) 3554 NR_106855 102465478 NR_106855 ENSG00000276926 MIR6797 hsa-mir-6797 microRNA 6797 ncRNA 322.001-3 chr6 146085202 146085552 + 1.16667 NA intron (NM_001278065, intron 2 of 9) L1M5|LINE|L1 56179 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 288.167-7 chr12 1377690 1378020 + 1.16667 NA intron (NR_027948, intron 16 of 19) intron (NR_027948, intron 16 of 19) -122636 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 338.334-4 chr11 73597979 73598273 + 1.16667 NA promoter-TSS (NM_001286050) promoter-TSS (NM_001286050) -14 NM_001286050 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 174.667-52 chr7 95612204 95612526 + 1.16667 NA Intergenic Intergenic -15849 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 214.667-37 chr5 180259633 180259837 + 1.16667 NA intron (NM_001364608, intron 6 of 12) intron (NM_001364608, intron 6 of 12) 20873 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 303.334-13 chr5 18054088 18054582 + 1.16667 NA Intergenic AluSg4|SINE|Alu 247061 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 330-4 chr1 212698789 212699418 + 1.16667 NA intron (NM_018664, intron 1 of 2) intron (NM_018664, intron 1 of 2) 737 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 268.667-18 chr2 45596470 45596928 + 1.16667 NA intron (NM_018079, intron 4 of 20) MIR|SINE|MIR 14568 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 185.834-6 chr3 36538517 36538809 + 1.16667 NA intron (NM_001292049, intron 8 of 8) L1M5|LINE|L1 158176 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 235.167-29 chr6 85537877 85538502 + 1.16667 NA intron (NM_001350541, intron 15 of 26) intron (NM_001350541, intron 15 of 26) 55669 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 285.334-6 chr5 138337498 138337984 + 1.16667 NA promoter-TSS (NM_016605) promoter-TSS (NM_016605) 184 NM_001135647 51307 Hs.54056 NM_016605 ENSG00000120709 FAM53C C5orf6 family with sequence similarity 53 member C protein-coding 276.667-7 chr11 100708863 100709270 + 1.16667 NA intron (NM_001367945, intron 1 of 25) AluSz|SINE|Alu -21111 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 254.833-21 chr7 31193070 31193545 + 1.16667 NA Intergenic Intergenic 140846 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 219.667-21 chr3 63354151 63354452 + 1.16667 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 75993 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 372.333-7 chr2 231224012 231224736 + 1.16667 NA intron (NM_001352757, intron 6 of 19) AluJb|SINE|Alu 25743 NM_001352758 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 169.834-9 chr5 31668486 31668750 + 1.16667 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 29487 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 174.334 chr1 181423727 181423964 + 1.16667 NA Intergenic Intergenic -59672 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 164.167-25 chr2 161484738 161484920 + 1.16667 NA Intergenic L1MA5A|LINE|L1 23073 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 347.667-7 chr2 149601929 149602395 + 1.16667 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -14387 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 292.167-19 chr6 83048715 83048981 + 1.16667 NA intron (NM_001350603, intron 2 of 8) intron (NM_001350603, intron 2 of 8) 16993 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 210.5-19 chr17 77097543 77097839 + 1.16667 NA intron (NM_001204410, intron 2 of 17) intron (NM_001204410, intron 2 of 17) 8274 NR_106997 102466864 NR_106997 ENSG00000284250 MIR6516 hsa-mir-6516 microRNA 6516 ncRNA 315.668 chr19 2427580 2427913 + 1.16667 NA promoter-TSS (NM_012458) promoter-TSS (NM_012458) -160 NM_012458 26517 Hs.75056 NM_012458 ENSG00000099800 TIMM13 TIM13|TIM13B|TIMM13A|TIMM13B|ppv1 translocase of inner mitochondrial membrane 13 protein-coding 196.334-6 chr16 89861045 89861226 + 1.16667 NA intron (NM_032451, intron 10 of 14) intron (NM_032451, intron 10 of 14) -12457 NM_014972 22980 Hs.415342 NM_014972 ENSG00000141002 TCF25 FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049 transcription factor 25 protein-coding 249.167-27 chr7 73811537 73811893 + 1.16667 NA Intergenic Intergenic -19148 NM_001305 1364 Hs.647036 NM_001305 ENSG00000189143 CLDN4 CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R claudin 4 protein-coding 190.501 chr15 59159124 59159288 + 1.16667 NA intron (NM_004998, intron 24 of 27) intron (NM_004998, intron 24 of 27) 12056 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 306.834-2 chr10 77368338 77368672 + 1.16667 NA intron (NR_126365, intron 3 of 5) L1ME1|LINE|L1 17633 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 278.5-7 chr13 25232854 25233191 + 1.16667 NA Intergenic L2a|LINE|L2 51690 NR_120427 102723318 Hs.549877 NR_120427 LINC01053 - long intergenic non-protein coding RNA 1053 ncRNA 195.667-39 chr5 153998349 153998665 + 1.16667 NA intron (NM_001317993, intron 12 of 14) MSTB2|LTR|ERVL-MaLR 40403 NM_001317993 10827 Hs.166551 NM_018691 ENSG00000055147 FAM114A2 133K02|C5orf3 family with sequence similarity 114 member A2 protein-coding 206.334-3 chr22 31681511 31681919 + 1.16667 NA 3' UTR (NM_173566, exon 9 of 9) 3' UTR (NM_173566, exon 9 of 9) -19151 NM_001326411 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 182-16 chr17 27895054 27895303 + 1.16667 NA Intergenic Intergenic -1813 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 541.167 chr19 16719475 16720123 + 1.16667 NA promoter-TSS (NM_001290355) promoter-TSS (NM_001290355) -48 NM_001007525 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 191.333-41 chr7 97466334 97466632 + 1.16667 NA Intergenic Intergenic -265603 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 231.167-5 chr1 159141835 159142100 + 1.16667 NA Intergenic Intergenic -29648 NM_021189 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 249.5 chr1 35649225 35649560 + 1.16667 NA Intergenic Intergenic -7866 NM_001199779 5690 Hs.471441 NM_002794 ENSG00000126067 PSMB2 HC7-I proteasome subunit beta 2 protein-coding 172.333-23 chr15 61273638 61273864 + 1.16667 NA Intergenic Intergenic -44449 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 183.334-8 chr4 73586549 73586752 + 1.16667 NA intron (NM_001270391, intron 5 of 9) intron (NM_001270391, intron 5 of 9) 33786 NM_001270391 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 217.334-6 chr2 156613139 156613570 + 1.16667 NA Intergenic Intergenic 176975 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 317.667-2 chr14 42179620 42180015 + 1.16667 NA Intergenic L1MA7|LINE|L1 572961 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 166-10 chr10 83546141 83546408 + 1.16667 NA Intergenic MER61F|LTR|ERV1 130815 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 218.333-9 chr15 70723843 70724235 + 1.16667 NA intron (NM_018003, intron 1 of 18) L2c|LINE|L2 -21757 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 275.833-15 chr21 42817994 42818659 + 1.16667 NA Intergenic (TCTTCC)n|Simple_repeat|Simple_repeat -38332 NR_135517 101928311 Hs.570404 NR_135517 ENSG00000283051 LINC01668 - long intergenic non-protein coding RNA 1668 ncRNA 193.5-43 chr6 37246103 37246360 + 1.16667 NA intron (NM_145316, intron 1 of 3) MLT1H|LTR|ERVL-MaLR 11368 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 199.5-34 chr4 6772572 6773154 + 1.16667 NA Intergenic Intergenic -9864 NM_014743 9778 Hs.79276 NM_014743 ENSG00000170871 KIAA0232 - KIAA0232 protein-coding 479.5 chr13 24994791 24995797 + 1.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 -26825 NR_026730 646405 Hs.620592 NM_001126062 TPTE2P1 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudo 196.5-40 chr7 33191716 33191920 + 1.16667 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 62254 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 164.5-40 chr4 40503918 40504123 + 1.16667 NA intron (NM_001098634, intron 2 of 6) FLAM_C|SINE|Alu -1901 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 208.667-33 chr4 57002506 57002755 + 1.16667 NA intron (NM_001303269, intron 8 of 25) intron (NM_001303269, intron 8 of 25) 23734 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 264.834-4 chr2 41828910 41829253 + 1.16667 NA Intergenic MIRb|SINE|MIR -48474 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 274-19 chr20 58162871 58163270 + 1.16667 NA Intergenic Intergenic 12168 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 174.167-20 chr2 78015127 78015634 + 1.16667 NA intron (NR_110288, intron 1 of 3) Tigger1|DNA|TcMar-Tigger -60354 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 247.167-9 chr18 4405897 4406266 + 1.16667 NA intron (NM_001242761, intron 1 of 11) MER51A|LTR|ERV1 49185 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 320.5-10 chr17 43910543 43911381 + 1.16667 NA Intergenic AluJb|SINE|Alu -1251 NM_001278370 4355 Hs.514208 NM_005374 ENSG00000108852 MPP2 DLG2 membrane palmitoylated protein 2 protein-coding 305.667-21 chr9 32775241 32775565 + 1.16667 NA Intergenic L1M4c|LINE|L1 -8137 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 235.5-3 chr1 236567201 236567544 + 1.16667 NA intron (NM_018072, intron 29 of 44) L2a|LINE|L2 37144 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 282-2 chr1 200616579 200617011 + 1.16667 NA intron (NM_014875, intron 2 of 29) intron (NM_014875, intron 2 of 29) 2043 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 256-18 chr20 48897591 48897898 + 1.16667 NA Intergenic L2a|LINE|L2 -23967 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 188.167-28 chr4 150559082 150559299 + 1.16667 NA intron (NM_001367550, intron 40 of 56) L1MC4|LINE|L1 -19899 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 169.667-27 chr17 55266476 55266661 + 1.16667 NA intron (NM_001330375, intron 1 of 3) intron (NM_001330375, intron 1 of 3) 346 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 164.167-46 chr6 56275165 56275409 + 1.16667 NA intron (NM_001318752, intron 1 of 28) L1PA16|LINE|L1 -27707 NM_030820 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 254.5-32 chr7 131690928 131691243 + 1.16667 NA Intergenic AluSx1|SINE|Alu -134457 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 242.833-26 chrX 96135706 96136267 + 1.16667 NA Intergenic Intergenic 201916 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 222.334-6 chr3 145766150 145766898 + 1.16667 NA Intergenic MLT2B1|LTR|ERVL 302661 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 173-31 chr3 65196784 65197087 + 1.16667 NA Intergenic Intergenic -508935 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 242.167-8 chr15 36499653 36499953 + 1.16667 NA Intergenic Intergenic -79823 NM_001321757 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 563.167 chr3 24773364 24774161 + 1.16667 NA Intergenic MIR|SINE|MIR -55561 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 403.834 chr14 29016078 29016878 + 1.16667 NA Intergenic Intergenic -230691 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 197.667-35 chr3 50299372 50299691 + 1.16667 NA promoter-TSS (NM_001200031) promoter-TSS (NM_001200031) -126 NM_001200032 8372 Hs.129910 NM_003549 ENSG00000186792 HYAL3 HYAL-3|LUCA-3|LUCA3 hyaluronidase 3 protein-coding 224.667-17 chr17 2605226 2605511 + 1.16667 NA intron (NM_000430, intron 1 of 10) intron (NM_000430, intron 1 of 10) 11714 NM_000430 5048 Hs.77318 NM_000430 ENSG00000007168 PAFAH1B1 LIS1|LIS2|MDCR|MDS|NudF|PAFAH platelet activating factor acetylhydrolase 1b regulatory subunit 1 protein-coding 330.167-10 chr8 118009171 118009605 + 1.16667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -88475 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 209.667-7 chr11 29428145 29428336 + 1.16667 NA Intergenic Intergenic -166173 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 269.834-3 chr5 166505434 166505759 + 1.16667 NA Intergenic Intergenic 420774 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 278.001 chr19 34640684 34640992 + 1.16667 NA intron (NR_027620, intron 1 of 3) intron (NR_027620, intron 1 of 3) -5035 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 165.667-2 chr1 71692474 71692639 + 1.16667 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 144456 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 174.167-22 chr2 207205119 207205576 + 1.16667 NA intron (NR_110283, intron 3 of 3) intron (NR_110283, intron 3 of 3) -34464 NR_146555 105373853 Hs.678559 NR_146555 ENSG00000229647 MYOSLID - myocardin-induced smooth muscle lncRNA, inducer of differentiation ncRNA 238.5-11 chr13 78073405 78073766 + 1.16667 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 18730 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 268.667-28 chr8 86557970 86558308 + 1.16667 NA intron (NM_003909, intron 16 of 16) intron (NM_003909, intron 16 of 16) 43704 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 201.834-2 chr14 38782329 38782610 + 1.16667 NA intron (NR_039982, intron 4 of 4) L1MA8|LINE|L1 -100127 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 261.001 chr11 96019264 96019530 + 1.16667 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -95190 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 280.5-5 chr11 72367686 72368148 + 1.16667 NA intron (NM_001258393, intron 3 of 14) intron (NM_001258393, intron 3 of 14) 66614 NM_001258393 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 168.334-5 chr19 51589418 51589587 + 1.16667 NA 3' UTR (NM_007147, exon 5 of 5) 3' UTR (NM_007147, exon 5 of 5) 4878 NR_034159 729975 Hs.716785 NR_034159 LINC01530 - long intergenic non-protein coding RNA 1530 ncRNA 186.834-3 chr2 159414878 159415284 + 1.16667 NA intron (NM_001329858, intron 12 of 36) L1MC5|LINE|L1 -128378 NM_001128212 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 242.834-2 chr1 81313502 81313844 + 1.16667 NA intron (NM_001366008, intron 1 of 26) intron (NM_001366008, intron 1 of 26) 7278 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 331.5-5 chr12 33238276 33238710 + 1.16667 NA Intergenic Intergenic 201326 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 362.667 chr1 236793874 236794379 + 1.16667 NA Intergenic Intergenic -1155 NM_001291939 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 194.667-53 chr7 26786485 26786897 + 1.16667 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 71032 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 273.667-9 chr18 7734419 7734765 + 1.16667 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 167276 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 199.667-24 chr20 50320535 50320803 + 1.16667 NA intron (NR_109950, intron 1 of 2) L2a|LINE|L2 673 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 251.834-2 chr12 6533367 6533769 + 1.16667 NA promoter-TSS (NM_001289746) promoter-TSS (NM_001289746) -949 NM_002046 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 208.501 chr14 70340731 70341117 + 1.16667 NA intron (NM_001202549, intron 3 of 4) intron (NM_001202549, intron 3 of 4) 18759 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 272.501-4 chr8 119751604 119751999 + 1.16667 NA intron (NM_003184, intron 22 of 25) intron (NM_003184, intron 22 of 25) -78411 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 310.334-3 chr2 228755198 228755589 + 1.16667 NA Intergenic AluSx|SINE|Alu -143998 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 214.5-8 chr13 22568592 22568862 + 1.16667 NA Intergenic L1M4a2|LINE|L1 329454 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 194.167-25 chr4 14390207 14390423 + 1.16667 NA Intergenic Intergenic 278347 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 234.667-9 chr13 91374794 91375285 + 1.16667 NA Intergenic Intergenic -23582 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 307.5-25 chr9 68823527 68823860 + 1.16667 NA intron (NM_003558, intron 4 of 15) intron (NM_003558, intron 4 of 15) 43628 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 346.667-4 chr10 31251795 31252369 + 1.16667 NA intron (NR_134478, intron 1 of 2) L1MB3|LINE|L1 64199 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 267-18 chr15 62740604 62741018 + 1.16667 NA intron (NM_015059, intron 29 of 55) intron (NM_015059, intron 29 of 55) -83146 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 260.167-17 chr4 52230866 52231274 + 1.16667 NA Intergenic LTR16A2|LTR|ERVL 179766 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 214-34 chr2 126629150 126629478 + 1.16667 NA Intergenic L1MC2|LINE|L1 -26621 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 287.167-14 chr6 100724231 100724533 + 1.16667 NA intron (NM_006828, intron 11 of 41) intron (NM_006828, intron 11 of 41) 156947 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 170.167-36 chr5 73088182 73088566 + 1.16667 NA 3' UTR (NM_138782, exon 26 of 26) 3' UTR (NM_138782, exon 26 of 26) -32201 NM_001161342 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 319.167-3 chr12 51028355 51028777 + 1.16667 NA promoter-TSS (NM_001174125) promoter-TSS (NM_001174125) -324 NM_001174125 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 208.667-16 chr14 63265762 63266112 + 1.16667 NA intron (NM_020663, intron 1 of 4) MER4D|LTR|ERV1 52998 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 225.834-10 chr4 144868161 144868373 + 1.16667 NA Intergenic L1MC|LINE|L1 222111 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 409.168 chr10 55493791 55494195 + 1.16667 NA intron (NM_001354404, intron 2 of 34) L1M4b|LINE|L1 -105049 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 198.333-29 chr2 168513753 168514207 + 1.16667 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) 57708 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 346.5 chr11 95841918 95842423 + 1.16667 NA intron (NM_001243571, intron 14 of 17) intron (NM_001243571, intron 14 of 17) 51672 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 332.5-6 chr18 58541733 58542226 + 1.16667 NA intron (NM_052947, intron 4 of 12) intron (NM_052947, intron 4 of 12) -58641 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 200.5-28 chr2 200939301 200939639 + 1.16667 NA intron (NR_033915, intron 7 of 16) intron (NR_033915, intron 7 of 16) 24190 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 173-7 chr10 86900126 86900283 + 1.16667 NA intron (NM_004329, intron 7 of 12) intron (NM_004329, intron 7 of 12) -55555 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 238.667-11 chr15 38478206 38478622 + 1.16667 NA intron (NM_173611, intron 6 of 7) intron (NM_173611, intron 6 of 7) 24287 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 182.667-4 chr1 109742542 109742838 + 1.16667 NA Intergenic MIR|SINE|MIR -1652 NM_000849 2947 Hs.2006 NM_000849 ENSG00000134202 GSTM3 GST5|GSTB|GSTM3-3|GTM3 glutathione S-transferase mu 3 protein-coding 256-4 chr10 126350553 126351034 + 1.16667 NA intron (NM_001288974, intron 1 of 18) MIRc|SINE|MIR 37684 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 192.167-17 chr17 59453781 59453991 + 1.16667 NA intron (NR_110813, intron 2 of 2) MIRb|SINE|MIR 72971 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 214.334-4 chr15 78113752 78114044 + 1.16667 NA intron (NM_001271888, intron 1 of 4) intron (NM_001271888, intron 1 of 4) 17547 NM_001301224 10518 Hs.129867 NM_006383 ENSG00000136425 CIB2 DFNB48|KIP2|USH1J calcium and integrin binding family member 2 protein-coding 164.167 chr1 45064049 45064268 + 1.16667 NA intron (NM_020883, intron 2 of 13) intron (NM_020883, intron 2 of 13) 51904 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 228.501-3 chr9 35026329 35026562 + 1.16667 NA Intergenic MER41A|LTR|ERV1 -14650 NM_001040412 138724 Hs.148250 NM_203299 ENSG00000174038 C9orf131 - chromosome 9 open reading frame 131 protein-coding 209.167-20 chr2 217277723 217277972 + 1.16667 NA Intergenic MIR3|SINE|MIR -4886 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 535.334-2 chr6 127642241 127643065 + 1.16667 NA Intergenic L1MA4|LINE|L1 65479 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 243.333-14 chr12 18380814 18381200 + 1.16667 NA intron (NM_001288774, intron 13 of 32) intron (NM_001288774, intron 13 of 32) 119467 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 263.334-11 chr8 138520713 138521089 + 1.16667 NA Intergenic Intergenic -23171 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 485.001-2 chr19 13588940 13589663 + 1.16667 NA Intergenic L3|LINE|CR1 -82822 NM_001174080 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 163.833-41 chr8 61925216 61925489 + 1.16667 NA Intergenic Intergenic 35513 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 256.834 chr14 25091196 25091453 + 1.16667 NA Intergenic Intergenic -41027 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 359.501-2 chr12 61556511 61556969 + 1.16667 NA Intergenic L1PREC2|LINE|L1 636099 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 244.167-4 chr10 48319441 48319822 + 1.16667 NA intron (NM_001323327, intron 2 of 12) AluSx1|SINE|Alu 12954 NM_001323327 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 211.167-18 chr4 139609788 139610034 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -53142 NM_001306199 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing 7, histone lysine methyltransferase protein-coding 251-5 chr12 58249435 58249749 + 1.16667 NA Intergenic Intergenic 161700 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 288-22 chr6 15838702 15839105 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -175845 NM_183040 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 347.334-8 chr7 21785043 21785616 + 1.16667 NA intron (NM_001277115, intron 58 of 81) intron (NM_001277115, intron 58 of 81) 160570 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 198.667-24 chr2 71773891 71774226 + 1.16667 NA Intergenic L1MEi|LINE|L1 307359 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 247.167-4 chr11 69366358 69366682 + 1.16667 NA Intergenic Intergenic -59135 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 223.833-14 chr4 30769440 30769837 + 1.16667 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 49269 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 248.167-24 chr7 41305965 41306280 + 1.16667 NA Intergenic Intergenic 204518 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 288.501-2 chr16 22623397 22623684 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR 77842 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 295.834-7 chr3 181845000 181845402 + 1.16667 NA Intergenic MIR|SINE|MIR -107163 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 214.5-19 chr2 30460283 30460631 + 1.16667 NA intron (NM_182551, intron 2 of 6) intron (NM_182551, intron 2 of 6) 13211 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 229.667-48 chr9 92137899 92138244 + 1.16667 NA non-coding (NR_015444, exon 12 of 13) non-coding (NR_015444, exon 12 of 13) -3396 NR_027341 158314 Hs.149940 NR_027341 LINC00475 C9orf44 long intergenic non-protein coding RNA 475 ncRNA 432.334-2 chr17 30161557 30161966 + 1.16667 NA intron (NM_032141, intron 2 of 6) intron (NM_032141, intron 2 of 6) -44601 NR_036149 100423003 NR_036149 ENSG00000284399 MIR3184 - microRNA 3184 ncRNA 271.834 chr3 23419766 23420098 + 1.16667 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 216605 NM_001370228 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 188.834-9 chr3 39508150 39508392 + 1.16667 NA intron (NR_103505, intron 4 of 6) L1ME1|LINE|L1 6205 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 215.167-35 chrX 88293923 88294271 + 1.16667 NA Intergenic Intergenic -453128 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 352 chr1 11092746 11093244 + 1.16667 NA intron (NM_002685, intron 3 of 23) MER47A|DNA|TcMar-Tigger -6680 NR_135062 105376736 Hs.634965 NR_135061 ENSG00000230337 EXOSC10-AS1 - EXOSC10 antisense RNA 1 ncRNA 280.834-4 chr2 215711587 215711879 + 1.16667 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -6310 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 219.334-10 chr4 104718715 104718950 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -223938 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 260-13 chr16 85372524 85372772 + 1.16667 NA Intergenic L3|LINE|CR1 -66323 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 179.667-18 chr2 56550131 56550378 + 1.16667 NA Intergenic Intergenic -364484 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 285.667-14 chr3 141105953 141106344 + 1.16667 NA intron (NM_080862, intron 2 of 2) MIR3|SINE|MIR 54801 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 205.5-3 chr1 231399658 231400028 + 1.16667 NA intron (NM_022051, intron 1 of 4) intron (NM_022051, intron 1 of 4) 25201 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 171.334-6 chr4 67545477 67545630 + 1.16667 NA promoter-TSS (NM_001812) promoter-TSS (NM_001812) -50 NR_155754 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 170.334-2 chr12 52230469 52231014 + 1.16667 NA Intergenic Intergenic -2502 NM_005556 3855 Hs.411501 NM_005556 ENSG00000135480 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 184-38 chr4 48377711 48377906 + 1.16667 NA intron (NM_020846, intron 2 of 7) intron (NM_020846, intron 2 of 7) 36279 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 241-34 chr9 115685593 115685881 + 1.16667 NA Intergenic L3|LINE|CR1 58502 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 237.334-5 chr15 49499070 49499392 + 1.16667 NA intron (NM_001330293, intron 10 of 10) L1P4|LINE|L1 75989 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 246.334-3 chr1 114636359 114636732 + 1.16667 NA intron (NM_198459, intron 1 of 17) AluJb|SINE|Alu 33504 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 204.334-4 chr2 216774483 216774734 + 1.16667 NA Intergenic Intergenic -79059 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 184.834-3 chr10 112620871 112621173 + 1.16667 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -13148 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 242.834-9 chr7 113699932 113700197 + 1.16667 NA Intergenic Intergenic 218945 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 222.667-30 chr4 109298631 109298858 + 1.16667 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 3914 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 231.5-18 chr17 45131833 45132233 + 1.16667 NA promoter-TSS (NM_001321352) promoter-TSS (NM_001321352) 482 NM_133373 113026 Hs.380094 NM_133373 ENSG00000161714 PLCD3 PLC-delta-3 phospholipase C delta 3 protein-coding 294.167-14 chr8 123872515 123873011 + 1.16667 NA intron (NM_001039112, intron 1 of 40) L2|LINE|L2 20776 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 291.667-5 chr16 4616396 4616785 + 1.16667 NA Intergenic CpG-9218 -1702 NM_001330467 124402 Hs.513313 NM_145253 ENSG00000153443 UBALD1 FAM100A|PP11303 UBA like domain containing 1 protein-coding 214.833-24 chr8 133879277 133879567 + 1.16667 NA Intergenic MIR1_Amn|SINE|MIR -7074 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 168.834-3 chrX 152889554 152889734 + 1.16667 NA Intergenic L2c|LINE|L2 -24798 NM_007150 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 with LIM domain protein-coding 363.167-3 chr8 76529674 76530238 + 1.16667 NA Intergenic Intergenic 123302 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 203.834-4 chr14 49677917 49678173 + 1.16667 NA intron (NM_002692, intron 3 of 18) AluSx|SINE|Alu 10169 NM_002692 5427 Hs.162777 NM_002692 ENSG00000100479 POLE2 DPE2 DNA polymerase epsilon 2, accessory subunit protein-coding 199-16 chr17 53153142 53153331 + 1.16667 NA Intergenic L1MC2|LINE|L1 167731 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 307.834-12 chr8 58064219 58064615 + 1.16667 NA intron (NM_147189, intron 3 of 4) intron (NM_147189, intron 3 of 4) 69894 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 268.501 chr15 94293256 94293678 + 1.16667 NA Intergenic L1MEf|LINE|L1 -4734 NM_001159643 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 175.667-34 chr21 38669135 38669423 + 1.16667 NA Intergenic LTR81B|LTR|Gypsy -7496 NR_111949 2078 Hs.473819 NM_004449 ENSG00000157554 ERG erg-3|p55 ETS transcription factor ERG protein-coding 229.667-22 chr3 25784080 25784318 + 1.16667 NA promoter-TSS (NM_001145293) promoter-TSS (NM_001145293) -701 NM_001145293 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 193.501-2 chr8 82880061 82880423 + 1.16667 NA Intergenic MIRb|SINE|MIR -31862 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 246.5-30 chr6 164315294 164315796 + 1.16667 NA Intergenic MER20B|DNA|hAT-Charlie 506518 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 198-18 chr2 12970364 12970709 + 1.16667 NA intron (NR_038434, intron 5 of 5) MLT1D|LTR|ERVL-MaLR 36477 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 214.834-12 chr7 69347055 69347281 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 250456 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 242.167-16 chr2 107578695 107579041 + 1.16667 NA Intergenic Intergenic 49449 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 299.834-6 chr17 47179312 47180057 + 1.16667 NA intron (NM_001256, intron 2 of 18) intron (NM_001256, intron 2 of 18) 9611 NM_001256 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 394.834-4 chrX 79081149 79081611 + 1.16667 NA Intergenic Intergenic -89592 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 167.167-37 chr9 29693139 29693386 + 1.16667 NA Intergenic L1MA8|LINE|L1 -479661 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 354.667-15 chr8 129250951 129251545 + 1.16667 NA Intergenic Intergenic -10008 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 218.667-19 chr2 182538997 182539347 + 1.16667 NA Intergenic Intergenic -16327 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 255.833-6 chr12 29482716 29483137 + 1.16667 NA intron (NM_001353179, intron 9 of 25) L3|LINE|CR1 16767 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 200.834-7 chr8 17818073 17818449 + 1.16667 NA Intergenic AluSx|SINE|Alu -16682 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 234-24 chr2 164990717 164991138 + 1.16667 NA Intergenic AluJo|SINE|Alu -35402 NM_001351540 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 241.667-19 chr3 99530872 99531396 + 1.16667 NA Intergenic Intergenic -107460 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 206.167-7 chr12 110512350 110512951 + 1.16667 NA intron (NM_001286534, intron 5 of 11) intron (NM_001286534, intron 5 of 11) 10319 NM_001286534 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 checkpoint clamp component B protein-coding 171.5-33 chr3 61379600 61379897 + 1.16667 NA Intergenic L1ME3|LINE|L1 -128287 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 178.834-9 chr7 20875544 20875944 + 1.16667 NA intron (NR_126381, intron 1 of 5) intron (NR_126381, intron 1 of 5) 40313 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 271.334-3 chr10 127627271 127627836 + 1.16667 NA Intergenic L1MA4A|LINE|L1 78204 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 193.667-48 chr6 135552941 135553160 + 1.16667 NA intron (NR_152845, intron 2 of 4) L1M7|LINE|L1 55249 NR_152843 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 234.667-22 chr3 132405882 132406368 + 1.16667 NA Intergenic Intergenic -11377 NM_015268 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 297.834 chr10 88289989 88290570 + 1.16667 NA intron (NM_001031709, intron 6 of 6) intron (NM_001031709, intron 6 of 6) 293039 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 343.167-2 chr16 52201479 52201843 + 1.16667 NA Intergenic Intergenic -56903 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 293.834-2 chr14 56281957 56282223 + 1.16667 NA intron (NM_021255, intron 3 of 5) L1ME4b|LINE|L1 163679 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 240.001-2 chr1 51437662 51437926 + 1.16667 NA intron (NM_001981, intron 12 of 24) intron (NM_001981, intron 12 of 24) -15699 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 337.5-5 chr14 56081731 56082313 + 1.16667 NA Intergenic G-rich|Low_complexity|Low_complexity -36389 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 262.501-3 chr20 56743862 56744212 + 1.16667 NA Intergenic Intergenic 114731 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 190.501-2 chr18 79380774 79380952 + 1.16667 NA Intergenic Intergenic -15067 NM_001278669 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 216.333-37 chr6 27091832 27092208 + 1.16667 NA Intergenic Intergenic 40776 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 243.334-8 chr3 82227051 82227294 + 1.16667 NA intron (NR_147146, intron 3 of 8) L2|LINE|L2 241030 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 247.001-5 chr5 104412714 104413116 + 1.16667 NA Intergenic L1PA17|LINE|L1 -686559 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 192-38 chr6 119613000 119613181 + 1.16667 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 63282 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 345.501 chr22 16774450 16774858 + 1.16667 NA Intergenic L1M3f|LINE|L1 -26216 NR_134584 101929350 Hs.561087 NR_134584 ENSG00000235343 LINC01665 - long intergenic non-protein coding RNA 1665 ncRNA 469.834-4 chr7 119175935 119176451 + 1.16667 NA Intergenic LTR41C|LTR|ERVL 731182 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 165-39 chr4 68121552 68121940 + 1.16667 NA intron (NM_207407, intron 1 of 9) intron (NM_207407, intron 1 of 9) 8123 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 267.501 chr1 58090693 58091109 + 1.16667 NA intron (NM_001353980, intron 1 of 5) L2b|LINE|L2 159602 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 241.834-5 chr14 55545232 55545515 + 1.16667 NA Intergenic L1MC1|LINE|L1 34719 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 214.167-15 chr2 202783937 202784151 + 1.16667 NA intron (NM_001288623, intron 12 of 12) L1MC4|LINE|L1 45190 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 176.5-37 chr6 122661710 122661982 + 1.16667 NA intron (NM_001270395, intron 1 of 4) L1MB8|LINE|L1 9117 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 244.833-3 chr18 5889800 5890240 + 1.16667 NA 3' UTR (NM_001080209, exon 3 of 3) 3' UTR (NM_001080209, exon 3 of 3) 5934 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 295-9 chr18 7034854 7035301 + 1.16667 NA intron (NM_005559, intron 13 of 62) intron (NM_005559, intron 13 of 62) 80400 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 268.667-11 chr14 99480951 99481240 + 1.16667 NA promoter-TSS (NM_001099402) promoter-TSS (NM_001099402) -236 NM_032233 84193 Hs.510407 NM_032233 ENSG00000183576 SETD3 C14orf154|hSETD3 SET domain containing 3, actin histidine methyltransferase protein-coding 233.501 chr13 83899347 83899605 + 1.16667 NA Intergenic Intergenic -17002 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 276.167-4 chr12 19198210 19198515 + 1.16667 NA intron (NM_019012, intron 3 of 25) L2a|LINE|L2 -6963 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 256.5-10 chr14 45680107 45680465 + 1.16667 NA Intergenic Intergenic 35316 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 309-15 chr3 39416952 39417474 + 1.16667 NA Intergenic Intergenic 6159 NR_002324 6044 Hs.449909 NR_002324 ENSG00000202363 SNORA62 E2|E2-1|RNE2|RNU108 small nucleolar RNA, H/ACA box 62 snoRNA 275.334-3 chr17 71325821 71326140 + 1.16667 NA Intergenic L1MB3|LINE|L1 -123801 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 264.334-8 chr6 39420051 39420360 + 1.16667 NA intron (NM_001289020, intron 14 of 21) intron (NM_001289020, intron 14 of 21) 11185 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 212.667-46 chr7 88441659 88441899 + 1.16667 NA Intergenic Intergenic -134885 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 172.5-55 chr8 106212851 106212998 + 1.16667 NA Intergenic Intergenic -57254 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 231.667-21 chr4 80145007 80145423 + 1.16667 NA Intergenic Intergenic -40055 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 239.834-7 chr4 184165472 184166164 + 1.16667 NA intron (NM_153343, intron 1 of 7) intron (NM_153343, intron 1 of 7) 52055 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 175.834-2 chr14 54394859 54395088 + 1.16667 NA Intergenic Intergenic -1895 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 231-7 chr12 39803430 39803728 + 1.16667 NA intron (NR_135051, intron 18 of 18) L1MEd|LINE|L1 177396 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 312.501-3 chr2 100013564 100013951 + 1.16667 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 91826 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 215.667-14 chr12 65113761 65114154 + 1.16667 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 7348 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 204.834-5 chr18 69921927 69922150 + 1.16667 NA intron (NM_001303619, intron 1 of 4) intron (NM_001303619, intron 1 of 4) 25835 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 534.834-2 chr3 149717381 149718071 + 1.16667 NA intron (NM_001348362, intron 2 of 9) intron (NM_001348362, intron 2 of 9) 7062 NM_001348362 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 173-21 chr16 12389745 12389984 + 1.16667 NA intron (NM_032167, intron 16 of 20) intron (NM_032167, intron 16 of 20) -330457 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 372.167-3 chr2 48108993 48109379 + 1.16667 NA Intergenic Intergenic -203393 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 241.334-4 chr17 63579062 63579333 + 1.16667 NA intron (NR_073585, intron 2 of 7) intron (NR_073585, intron 2 of 7) -21698 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 265.5-32 chr8 73281624 73281941 + 1.16667 NA Intergenic Intergenic 11851 NM_000971 6129 Hs.421257 NM_000971 ENSG00000147604 RPL7 L7|humL7-1 ribosomal protein L7 protein-coding 341.834-3 chr12 56752108 56752712 + 1.16667 NA promoter-TSS (NM_000946) promoter-TSS (NM_000946) -87 NM_000946 5557 Hs.534339 NM_000946 ENSG00000198056 PRIM1 p49 DNA primase subunit 1 protein-coding 195.167-2 chr1 172971986 172972243 + 1.16667 NA Intergenic L2c|LINE|L2 78849 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 502.001 chr3 172625934 172626509 + 1.16667 NA Intergenic Arthur1|DNA|hAT-Tip100 -30614 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 271.5-29 chr4 54194310 54194765 + 1.16667 NA Intergenic L1MC4|LINE|L1 -34756 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 305.5-17 chr6 49017947 49018382 + 1.16667 NA Intergenic Intergenic 445089 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 483.834-4 chr8 77992113 77992607 + 1.16667 NA Intergenic Intergenic -523980 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 250.834-2 chr1 172358208 172358606 + 1.16667 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -62278 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 434.5-4 chr5 24445499 24446023 + 1.16667 NA Intergenic AluSx|SINE|Alu 199217 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 248.5-17 chr2 18762481 18762803 + 1.16667 NA Intergenic Intergenic -173062 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 328.167-8 chr6 40872973 40873356 + 1.16667 NA Intergenic Intergenic 150116 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 167.834-2 chr10 96824366 96824598 + 1.16667 NA Intergenic L1MC4|LINE|L1 4282 NR_030338 693192 NR_030338 ENSG00000207976 MIR607 MIRN607|hsa-mir-607 microRNA 607 ncRNA 238.834-11 chr8 87460578 87460840 + 1.16667 NA Intergenic L1MC4|LINE|L1 413306 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 303.001 chr3 121988572 121988858 + 1.16667 NA intron (NM_001199799, intron 7 of 7) intron (NM_001199799, intron 7 of 7) 33532 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 306.501-7 chr6 156344196 156344734 + 1.16667 NA Intergenic Intergenic -34285 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 242.167-6 chr14 72474194 72474551 + 1.16667 NA intron (NM_001370288, intron 9 of 16) intron (NM_001370288, intron 9 of 16) -42448 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 346.834 chr3 76044109 76044471 + 1.16667 NA Intergenic Intergenic -258741 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 197.667-17 chr13 49934793 49934982 + 1.16667 NA intron (NM_020456, intron 1 of 4) L2a|LINE|L2 1453 NM_020456 57213 Hs.44235 NM_020456 ENSG00000123178 SPRYD7 C13orf1|CLLD6 SPRY domain containing 7 protein-coding 280 chr1 66332120 66332580 + 1.16667 NA 5' UTR (NM_001037339, exon 1 of 10) 5' UTR (NM_001037339, exon 1 of 10) 242 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 203-23 chr3 7905858 7906162 + 1.16667 NA Intergenic L1P3|LINE|L1 110297 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 303.5-11 chr8 120010509 120010841 + 1.16667 NA intron (NM_022783, intron 8 of 8) L1ME4a|LINE|L1 -114427 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 190.833-26 chr8 109206443 109206763 + 1.16667 NA Intergenic L1M4a1|LINE|L1 119975 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 245.667-27 chr8 76406136 76406427 + 1.16667 NA promoter-TSS (NR_105006) promoter-TSS (NR_105006) -373 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 195.5-16 chr2 24115354 24115600 + 1.16667 NA 3' UTR (NM_199346, exon 5 of 5) 3' UTR (NM_199346, exon 5 of 5) 7857 NM_199346 375189 Hs.442718 NM_199346 ENSG00000176732 PFN4 - profilin family member 4 protein-coding 174.334-10 chr4 97652874 97653100 + 1.16667 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 286061 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 168.167-22 chr3 112136876 112137325 + 1.16667 NA Intergenic Intergenic 3677 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 166-51 chr3 132357108 132357302 + 1.16667 NA 3' UTR (NM_001099, exon 10 of 10) 3' UTR (NM_001099, exon 10 of 10) 39798 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 362.167-9 chr2 14106077 14106443 + 1.16667 NA Intergenic Intergenic 294698 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 281.334-9 chr3 95211815 95212140 + 1.16667 NA Intergenic Intergenic 273714 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 266.5-22 chr5 44734063 44734445 + 1.16667 NA Intergenic Intergenic 74539 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 184.167-10 chr14 80876793 80877178 + 1.16667 NA intron (NM_152446, intron 8 of 24) L1MEg|LINE|L1 64753 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 262.834 chr10 21065488 21065773 + 1.16667 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -108360 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 226.667-22 chr2 116600955 116601331 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -1213548 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 173.334 chr1 197926063 197926381 + 1.16667 NA intron (NM_001370213, intron 3 of 4) intron (NM_001370213, intron 3 of 4) 8850 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 198.667-35 chr5 15636634 15636849 + 1.16667 NA intron (NM_001278317, intron 2 of 3) Tigger13a|DNA|TcMar-Tigger -21739 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 233.167-6 chr12 14451136 14451409 + 1.16667 NA intron (NM_181352, intron 6 of 14) L1M4|LINE|L1 65991 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 250.667-4 chr11 5832277 5832701 + 1.16667 NA Intergenic L1MA7|LINE|L1 9408 NM_001005167 390078 NM_001005167 ENSG00000205409 OR52E6 OR11-58 olfactory receptor family 52 subfamily E member 6 protein-coding 191.167-5 chr11 13284279 13284587 + 1.16667 NA intron (NM_001351822, intron 1 of 18) intron (NM_001351822, intron 1 of 18) 6706 NM_001351821 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 185.833-28 chr7 25392044 25392283 + 1.16667 NA Intergenic Intergenic -163677 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 176.167-44 chr7 88429397 88429587 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -122598 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 166.834 chr10 106145896 106146050 + 1.16667 NA intron (NR_134330, intron 1 of 4) Tigger3b|DNA|TcMar-Tigger 5808 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 170.167-32 chr3 185234827 185235016 + 1.16667 NA intron (NM_001966, intron 3 of 6) AluSx|SINE|Alu 18351 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 271.667-25 chr8 117739310 117739710 + 1.16667 NA Intergenic Intergenic 181403 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 240.5-33 chrX 28531882 28532178 + 1.16667 NA Intergenic Intergenic -36367 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 196.167-14 chr15 45489608 45489986 + 1.16667 NA intron (NM_013309, intron 4 of 7) intron (NM_013309, intron 4 of 7) -21339 NR_022014 283651 Hs.574240 NM_173609 HMGN2P46 C15orf21|D-PCa-2 high mobility group nucleosomal binding domain 2 pseudogene 46 pseudo 193.333-14 chr12 123657096 123657404 + 1.16667 NA intron (NM_001271867, intron 8 of 11) L2a|LINE|L2 -13863 NM_024809 79867 Hs.167165 NM_024809 ENSG00000168778 TCTN2 C12orf38|JBTS24|MKS8|TECT2 tectonic family member 2 protein-coding 252.001 chr11 102367093 102367481 + 1.16667 NA intron (NM_001256163, intron 5 of 8) L1ME3Cz|LINE|L1 19913 NM_001256163 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 285.167-11 chr20 8052522 8052961 + 1.16667 NA Intergenic Intergenic -32980 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 365.167-4 chr22 48258649 48259109 + 1.16667 NA Intergenic Intergenic -15485 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 233.167-5 chr11 110912284 110912510 + 1.16667 NA Intergenic (ACAA)n|Simple_repeat|Simple_repeat 184921 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 220.667-2 chr1 170576710 170576922 + 1.16667 NA Intergenic L1MA8|LINE|L1 -44207 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 312.501-5 chr6 115174087 115174498 + 1.16667 NA Intergenic Intergenic 469543 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 259 chr1 76637577 76637966 + 1.16667 NA TTS (NM_001349109) TTS (NM_001349109) 141496 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 323.167-5 chr3 194671370 194671820 + 1.16667 NA intron (NM_018385, intron 1 of 13) intron (NM_018385, intron 1 of 13) 596 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 281.501 chr1 161761439 161761771 + 1.16667 NA Intergenic AluSx1|SINE|Alu -4715 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 264.834-7 chr4 90773705 90774051 + 1.16667 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 538847 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 200.667-44 chr5 143150632 143150833 + 1.16667 NA intron (NM_001349547, intron 20 of 21) L1MC2|LINE|L1 -41768 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 276.333-3 chr18 2565670 2566096 + 1.16667 NA intron (NM_022840, intron 2 of 8) AluY|SINE|Alu 5622 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 246.333 chr1 40132621 40133070 + 1.16667 NA Intergenic CpG -28542 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 261.5-31 chr5 14391253 14391528 + 1.16667 NA intron (NM_007118, intron 27 of 56) intron (NM_007118, intron 27 of 56) -72593 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 273-24 chr6 44415437 44416009 + 1.16667 NA intron (NM_001253, intron 8 of 15) MLT1J|LTR|ERVL-MaLR -19918 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 256.334-7 chr3 133153262 133153608 + 1.16667 NA intron (NM_001282865, intron 1 of 3) MIR|SINE|MIR 28614 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 190.667-22 chr16 53294653 53294916 + 1.16667 NA intron (NM_001352157, intron 28 of 37) MLT1H1|LTR|ERVL-MaLR 76428 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 324.167-13 chr3 12994889 12995384 + 1.16667 NA intron (NM_001134382, intron 1 of 13) CpG -8035 NM_001330619 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 340.667-11 chr7 35343783 35344179 + 1.16667 NA intron (NR_038864, intron 1 of 2) L1MA6|LINE|L1 30126 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 252.834-5 chr12 49047824 49048134 + 1.16667 NA exon (NM_003482, exon 14 of 54) exon (NM_003482, exon 14 of 54) 7345 NM_003482 8085 Hs.731384 NM_003482 ENSG00000167548 KMT2D AAD10|ALR|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21 lysine methyltransferase 2D protein-coding 213.334-8 chr17 33313966 33314295 + 1.16667 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR -21142 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 295.167 chr1 201506931 201507260 + 1.16667 NA promoter-TSS (NM_001193571) promoter-TSS (NM_001193571) 28 NM_004078 1465 Hs.108080 NM_004078 ENSG00000159176 CSRP1 CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141|HEL-S-286 cysteine and glycine rich protein 1 protein-coding 292-4 chr10 22619824 22620259 + 1.16667 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 94067 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 199.667-29 chr3 148955121 148955394 + 1.16667 NA Intergenic L2c|LINE|L2 -36151 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 182.334 chr10 57914191 57914417 + 1.16667 NA Intergenic Tigger2a|DNA|TcMar-Tigger 353590 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 197.5-23 chr3 40465499 40465681 + 1.16667 NA 3' UTR (NM_001034996, exon 6 of 6) 3' UTR (NM_001034996, exon 6 of 6) 8251 NM_001034996 9045 Hs.446522 NM_003973 ENSG00000188846 RPL14 CAG-ISL-7|CTG-B33|L14|RL14|hRL14 ribosomal protein L14 protein-coding 249.5-24 chr8 60620710 60621193 + 1.16667 NA 3' UTR (NM_001242644, exon 7 of 7) 3' UTR (NM_001242644, exon 7 of 7) -57789 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 221.5-23 chr5 104960276 104960546 + 1.16667 NA Intergenic MSTD|LTR|ERVL-MaLR -139063 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 226-21 chr17 66201985 66202408 + 1.16667 NA Intergenic L4_B_Mam|LINE|RTE-X -10063 NM_001353129 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 230.334-4 chr2 117165178 117165407 + 1.16667 NA Intergenic LTR44|LTR|ERV1 -649399 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 245.334-7 chr2 44090638 44090897 + 1.16667 NA Intergenic LTR33|LTR|ERVL -78036 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 301.5-3 chr1 83860121 83860996 + 1.16667 NA promoter-TSS (NR_119374) promoter-TSS (NR_119374) -12 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 424.667-2 chr3 66407661 66408371 + 1.16667 NA intron (NM_015541, intron 7 of 18) intron (NM_015541, intron 7 of 18) 92405 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 234.667-18 chr22 43106445 43106840 + 1.16667 NA Intergenic Intergenic -4108 NM_001197 638 Hs.475055 NM_001197 ENSG00000100290 BIK BIP1|BP4|NBK BCL2 interacting killer protein-coding 238.5-26 chr4 63804085 63804469 + 1.16667 NA Intergenic MER9a3|LTR|ERVK 605173 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 184.833-9 chr12 24960394 24960671 + 1.16667 NA Intergenic L1M1|LINE|L1 -11431 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 378.001-4 chr9 99226094 99226514 + 1.16667 NA intron (NM_006808, intron 2 of 3) intron (NM_006808, intron 2 of 3) 4022 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - SEC61 translocon beta subunit protein-coding 284.501-2 chr2 78876500 78876782 + 1.16667 NA Intergenic Intergenic -149061 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 369.5-8 chr16 7011974 7012614 + 1.16667 NA intron (NM_001142334, intron 1 of 13) MIRb|SINE|MIR 238485 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 290.167-7 chr14 60697410 60697794 + 1.16667 NA Intergenic L1PB3|LINE|L1 26749 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 178.167-30 chr8 134395099 134395448 + 1.16667 NA Intergenic Intergenic -202798 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 229.167-19 chr6 84102254 84102614 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR 68315 NM_001346544 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 173.667-3 chr1 235182243 235182477 + 1.16667 NA exon (NM_016374, exon 20 of 24) exon (NM_016374, exon 20 of 24) 7756 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 228-10 chr11 798402 798752 + 1.16667 NA promoter-TSS (NM_001191060) promoter-TSS (NM_001191060) -296 NM_001191061 79751 Hs.99486 NM_024698 ENSG00000177542 SLC25A22 EIEE3|GC-1|GC1|NET44 solute carrier family 25 member 22 protein-coding 212.5-21 chr22 22337796 22338092 + 1.16667 NA Intergenic L1MB3|LINE|L1 39846 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 315.333-12 chr2 111887476 111887942 + 1.16667 NA Intergenic L1M4|LINE|L1 -3516 NM_022662 64682 Hs.436527 NM_022662 ENSG00000153107 ANAPC1 APC1|MCPR|TSG24 anaphase promoting complex subunit 1 protein-coding 226.167-24 chr7 81514619 81515147 + 1.16667 NA TTS (NR_136264) TTS (NR_136264) 46936 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 255-13 chr13 25233579 25233983 + 1.16667 NA Intergenic L2a|LINE|L2 52449 NR_120427 102723318 Hs.549877 NR_120427 LINC01053 - long intergenic non-protein coding RNA 1053 ncRNA 237.334-15 chr8 54443694 54444026 + 1.16667 NA Intergenic Intergenic -14075 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 323.667-15 chr2 101383705 101384244 + 1.16667 NA intron (NM_153836, intron 1 of 3) MamRep1879|DNA|hAT-Tip100? 3529 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 186.667-66 chr8 145076837 145077046 + 1.16667 NA Intergenic L1PA3|LINE|L1 24474 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 194.834-8 chr2 44233333 44233529 + 1.16667 NA 3' UTR (NM_177968, exon 6 of 6) 3' UTR (NM_177968, exon 6 of 6) -42049 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 224.334-2 chr1 80872357 80872694 + 1.16667 NA Intergenic Intergenic 231238 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 245.5-22 chr8 122045825 122046208 + 1.16667 NA Intergenic (ATTACA)n|Simple_repeat|Simple_repeat -404576 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 198.667-23 chr2 31336977 31337272 + 1.16667 NA intron (NM_000379, intron 35 of 35) intron (NM_000379, intron 35 of 35) 77618 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 186.833-9 chr17 64275490 64275749 + 1.16667 NA Intergenic L2|LINE|L2 -12359 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 228.667-14 chr16 24754391 24754758 + 1.16667 NA intron (NM_014494, intron 3 of 24) intron (NM_014494, intron 3 of 24) 24923 NM_001330520 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 165.5-18 chr17 43763659 43763861 + 1.16667 NA Intergenic L1MC1|LINE|L1 -4969 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 182.334-5 chr4 172366125 172366301 + 1.16667 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 322704 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 231.167-3 chr1 108157095 108157412 + 1.16667 NA intron (NM_013386, intron 5 of 9).2 intron (NM_013386, intron 5 of 9).2 35582 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 456.833-3 chr8 119258272 119258942 + 1.16667 NA Intergenic Intergenic -11750 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 291.167-10 chr20 5951041 5951353 + 1.16667 NA promoter-TSS (NM_015939) promoter-TSS (NM_015939) 545 NM_001281522 84515 Hs.597484 NM_032485 ENSG00000125885 MCM8 C20orf154|POF10|dJ967N21.5 minichromosome maintenance 8 homologous recombination repair factor protein-coding 163.333-53 chr7 14582980 14583276 + 1.16667 NA exon (NM_145695, exon 17 of 24) exon (NM_145695, exon 17 of 24) 258322 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 197.001 chr1 247741491 247741675 + 1.16667 NA intron (NM_001355292, intron 1 of 4) intron (NM_001355292, intron 1 of 4) 2968 NM_001004732 343170 NM_001004732 ENSG00000153230 OR14K1 OR1-39|OR1.5.9|OR5AY1 olfactory receptor family 14 subfamily K member 1 protein-coding 314.667-15 chr9 93279433 93279885 + 1.16667 NA intron (NM_001282394, intron 19 of 29) L1ME1|LINE|L1 66644 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 221.334-3 chr12 124763024 124763237 + 1.16667 NA Intergenic Intergenic 76541 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 216.334-6 chr6 7276057 7276475 + 1.16667 NA Intergenic Intergenic 36933 NR_120448 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 175.834-7 chr3 188620114 188620354 + 1.16667 NA intron (NM_005578, intron 6 of 10) L1MB8|LINE|L1 -51568 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 219.833-13 chr19 11435105 11435561 + 1.16667 NA promoter-TSS (NM_001302454) promoter-TSS (NM_001302454) 76 NM_001001329 5589 Hs.610830 NM_002743 ENSG00000130175 PRKCSH AGE-R2|G19P1|GIIB|PCLD|PCLD1|PKCSH|PLD1|VASAP-60 protein kinase C substrate 80K-H protein-coding 175.5-28 chr2 5925801 5926016 + 1.16667 NA Intergenic Intergenic -6779 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 387.5-7 chr8 66751477 66751911 + 1.16667 NA intron (NM_001033578, intron 1 of 16) intron (NM_001033578, intron 1 of 16) 16340 NR_002734 26255 Hs.647156 NR_002734 ENSG00000213005 PTTG3P PTTG3|rcPTTG1 pituitary tumor-transforming 3, pseudogene pseudo 467.833 chr1 28826039 28826699 + 1.16667 NA intron (NM_000911, intron 1 of 2) AluJb|SINE|Alu 14199 NM_000911 4985 Hs.372 NM_000911 ENSG00000116329 OPRD1 DOP|DOR|DOR1|OPRD opioid receptor delta 1 protein-coding 194.167-22 chr22 38287504 38287761 + 1.16667 NA Intergenic L2b|LINE|L2 -14622 NM_001195072 25829 Hs.182626 NM_012264 ENSG00000198792 TMEM184B C22orf5|FM08|HS5O6A|HSPC256 transmembrane protein 184B protein-coding 293.667-6 chr14 89097088 89097510 + 1.16667 NA Intergenic Intergenic 272648 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 404.334-2 chr1 197179949 197180490 + 1.16667 NA intron (NM_194314, intron 5 of 9) Tigger3b|DNA|TcMar-Tigger 20323 NR_135153 360023 Hs.529439 NM_194314 ENSG00000177888 ZBTB41 FRBZ1|ZNF924 zinc finger and BTB domain containing 41 protein-coding 195.167-15 chr15 74425587 74426151 + 1.16667 NA intron (NM_001146029, intron 1 of 12) MER54A|LTR|ERVL 7835 NM_001146030 8482 Hs.24640 NM_003612 ENSG00000138623 SEMA7A CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL semaphorin 7A (John Milton Hagen blood group) protein-coding 356.5 chr10 119445160 119445829 + 1.16667 NA intron (NM_005308, intron 12 of 15) intron (NM_005308, intron 12 of 15) 67522 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 194.834 chr1 228236077 228236520 + 1.16667 NA intron (NM_052843, intron 9 of 80) L1MEf|LINE|L1 -22634 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 216.5-32 chr3 96407975 96408307 + 1.16667 NA Intergenic Intergenic 48177 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 187.667-42 chr8 105167163 105167371 + 1.16667 NA Intergenic Intergenic -151171 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 372.833-8 chr9 36166377 36166957 + 1.16667 NA Intergenic CpG -2721 NM_005893 881 Hs.115460 NM_005893 ENSG00000185972 CCIN BTBD20|KBTBD14 calicin protein-coding 302.167-14 chr7 33877504 33877943 + 1.16667 NA Intergenic Intergenic -27192 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 263.667-8 chr14 89177410 89177861 + 1.16667 NA intron (NM_001085471, intron 6 of 6) LTR50|LTR|ERVL 239598 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 197.167-2 chr1 245087545 245087893 + 1.16667 NA 3' UTR (NM_001290327, exon 8 of 8) 3' UTR (NM_001290327, exon 8 of 8) -67266 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 247.5-38 chr5 29341709 29341993 + 1.16667 NA Intergenic Intergenic 54125 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 310-12 chr15 59614704 59615234 + 1.16667 NA intron (NM_004751, intron 1 of 2) intron (NM_004751, intron 1 of 2) 3186 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 310.833-10 chr22 20092911 20093633 + 1.16667 NA intron (NM_022720, intron 8 of 13) AluY|SINE|Alu 7214 NR_031706 100302197 NR_031706 ENSG00000284464 MIR1306 MIRN1306|hsa-mir-1306|mir-1306 microRNA 1306 ncRNA 201.667-7 chr12 12684769 12685032 + 1.16667 NA intron (NM_006143, intron 2 of 3) intron (NM_006143, intron 2 of 3) 11283 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 189.334-14 chrX 27403992 27404499 + 1.16667 NA Intergenic Intergenic 59096 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 330.5-3 chr11 14644731 14645174 + 1.16667 NA exon (NM_001363569, exon 1 of 16) exon (NM_001363569, exon 1 of 16) 1148 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 214.667-38 chr6 27330985 27331208 + 1.16667 NA Intergenic Intergenic 6335 NR_045612 387316 Hs.326753 NM_032030 VN1R10P FKSG83|VNR6I1P|b24o18.2|hs6V1-1p vomeronasal 1 receptor 10 pseudogene pseudo 190-42 chr5 104220915 104221196 + 1.16667 NA Intergenic L1MEh|LINE|L1 -658266 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 402.001 chr5 148103457 148103929 + 1.16667 NA intron (NM_006846, intron 15 of 32) Tigger12|DNA|TcMar-Tigger 39713 NM_001127699 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 208.834 chr16 72916434 72916705 + 1.16667 NA intron (NM_001164766, intron 2 of 8) intron (NM_001164766, intron 2 of 8) 131559 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 221.334-14 chr9 36880943 36881361 + 1.16667 NA intron (NM_001280549, intron 6 of 7) L1MA7|LINE|L1 12379 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 301-8 chr12 106251521 106251958 + 1.16667 NA Intergenic Intergenic -3719 NM_006825 10970 Hs.74368 NM_006825 ENSG00000136026 CKAP4 CLIMP-63|ERGIC-63|p63 cytoskeleton associated protein 4 protein-coding 247.5-40 chr6 50748537 50748935 + 1.16667 NA intron (NM_172238, intron 6 of 7) intron (NM_172238, intron 6 of 7) 35192 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 279-28 chr4 180456887 180457350 + 1.16667 NA Intergenic Intergenic 702031 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 232.167-4 chr12 42801685 42802047 + 1.16667 NA Intergenic MER4D1|LTR|ERV1 109650 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 285.167-6 chr16 13956693 13957220 + 1.16667 NA Intergenic Intergenic 36799 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 242.667-18 chr20 11510674 11510908 + 1.16667 NA Intergenic L1MA2|LINE|L1 -237408 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 390.834-7 chr8 138114166 138114754 + 1.16667 NA Intergenic Intergenic -30915 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 219.501 chr3 30741327 30741787 + 1.16667 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 134956 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 535.501 chr11 66480011 66480662 + 1.16667 NA promoter-TSS (NR_120586) promoter-TSS (NR_120586) -87 NR_120586 101928069 Hs.523816 NR_120586 ENSG00000255517 LOC101928069 - uncharacterized LOC101928069 ncRNA 251.5-27 chr7 118162065 118162506 + 1.16667 NA Intergenic MER4C|LTR|ERV1 -21879 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 338.834 chr14 23307594 23308134 + 1.16667 NA exon (NM_004050, exon 3 of 4) exon (NM_004050, exon 3 of 4) 1004 NM_001199839 599 Hs.410026 NM_004050 ENSG00000129473 BCL2L2 BCL-W|BCL2-L-2|BCLW|PPP1R51 BCL2 like 2 protein-coding 296.834 chr1 207050024 207050416 + 1.16667 NA intron (NM_001276320, intron 3 of 3) intron (NM_001276320, intron 3 of 3) 857 NM_018566 55432 Hs.567533 NM_018566 ENSG00000180667 YOD1 DUBA8|OTUD2|PRO0907 YOD1 deubiquitinase protein-coding 271.667-26 chr8 141964938 141965389 + 1.16667 NA Intergenic Intergenic -178850 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 194.167-28 chr5 37632138 37632538 + 1.16667 NA intron (NM_001345998, intron 10 of 17) Tigger3b|DNA|TcMar-Tigger 202484 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 299.167-13 chr2 21007337 21007855 + 1.16667 NA exon (NM_000384, exon 26 of 29) exon (NM_000384, exon 26 of 29) 36477 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 490.834-2 chr10 48510152 48510986 + 1.16667 NA non-coding (NR_146782, exon 2 of 2) non-coding (NR_146782, exon 2 of 2) 1020 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 325.001-3 chr8 125344053 125344435 + 1.16667 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -86114 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 205.5-43 chr9 110755879 110756351 + 1.16667 NA intron (NM_001166281, intron 7 of 11) MIR|SINE|MIR 27853 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 181.834-4 chr10 57594365 57594541 + 1.16667 NA Intergenic L1M5|LINE|L1 -289894 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 218.501 chr14 43903112 43903321 + 1.16667 NA Intergenic Intergenic 604067 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 289.667-5 chr10 120421433 120422069 + 1.16667 NA Intergenic Intergenic -35203 NR_134516 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 210.167-22 chr2 155916816 155917113 + 1.16667 NA Intergenic Intergenic 337967 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 191.834-6 chr8 103272729 103272920 + 1.16667 NA intron (NR_148215, intron 2 of 3) L1MB8|LINE|L1 -25670 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 331.001 chr10 25327679 25328128 + 1.16667 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -151627 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 225.001-2 chr6 157046012 157046241 + 1.16667 NA intron (NM_001363725, intron 2 of 17) intron (NM_001363725, intron 2 of 17) 9699 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 357.334 chr22 26303165 26303616 + 1.16667 NA intron (NM_001184776, intron 5 of 14) L2b|LINE|L2 -125870 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 275.167-4 chr10 7106786 7107033 + 1.16667 NA Intergenic Intergenic 79875 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 306.667-3 chr12 74122651 74123155 + 1.16667 NA Intergenic Intergenic 169728 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 659.167 chr19 43618716 43620012 + 1.16667 NA intron (NM_182498, intron 1 of 2) CpG 265 NM_182498 126299 Hs.99093 NM_182498 ENSG00000131116 ZNF428 C19orf37|Zfp428 zinc finger protein 428 protein-coding 233.001 chr1 32992660 32992887 + 1.16667 NA Intergenic Intergenic -27964 NM_001300826 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 285.167-20 chrX 56978401 56978773 + 1.16667 NA non-coding (NR_027139, exon 4 of 5) non-coding (NR_027139, exon 4 of 5) 16954 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 324.167 chr1 101635457 101635865 + 1.16667 NA Intergenic L2c|LINE|L2 211419 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 224.5-7 chr12 6735841 6736160 + 1.16667 NA Intergenic L1MD2|LINE|L1 11713 NM_001164093 50813 Hs.530823 NM_016319 ENSG00000111652 COPS7A CSN7|CSN7A|SGN7a COP9 signalosome subunit 7A protein-coding 186.667-14 chr10 62368928 62369221 + 1.16667 NA intron (NR_104162, intron 1 of 3) intron (NR_104162, intron 1 of 3) -5083 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 180.5-21 chr3 4107656 4107858 + 1.16667 NA Intergenic AluJr|SINE|Alu -195547 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 323.167-8 chr6 97067980 97068354 + 1.16667 NA intron (NR_104421, intron 5 of 8) intron (NR_104421, intron 5 of 8) 58091 NM_001323264 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 176.501 chr1 234946591 234946742 + 1.16667 NA Intergenic Intergenic 17333 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 169.833-31 chr3 166240834 166241128 + 1.16667 NA Intergenic Intergenic -403558 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 169.334 chr13 94344657 94344888 + 1.16667 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) 134910 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 272.5-10 chr16 31860400 31861042 + 1.16667 NA Intergenic L1MB8|LINE|L1 -13037 NR_049749 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 254.167-14 chr18 60417309 60417735 + 1.16667 NA Intergenic L1MA4|LINE|L1 -44747 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 200.334-10 chr6 70309625 70309800 + 1.16667 NA Intergenic MER5A|DNA|hAT-Charlie -6628 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 269.001-3 chr4 21135179 21135430 + 1.16667 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -151295 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 238.667-21 chr5 178145950 178146221 + 1.16667 NA intron (NM_001288795, intron 7 of 10) intron (NM_001288795, intron 7 of 10) 7875 NM_001034833 55651 Hs.744074 NM_017838 ENSG00000145912 NHP2 DKCB2|NHP2P|NOLA2 NHP2 ribonucleoprotein protein-coding 200.333-7 chr1 147492179 147492565 + 1.16667 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 25503 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 275.667-20 chr5 55342455 55342808 + 1.16667 NA intron (NM_015360, intron 7 of 26) intron (NM_015360, intron 7 of 26) 34642 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 227.334-16 chr6 141665952 141666203 + 1.16667 NA Intergenic Intergenic 422722 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 236-12 chr2 50580691 50580973 + 1.16667 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 115430 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 234.5-4 chr1 114975961 114976494 + 1.16667 NA intron (NM_001282541, intron 27 of 31) intron (NM_001282541, intron 27 of 31) -53597 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 277-24 chr5 170420773 170421241 + 1.16667 NA intron (NR_109899, intron 2 of 2) intron (NR_109899, intron 2 of 2) 31514 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 252.167-16 chr3 116971299 116971707 + 1.16667 NA Intergenic Intergenic 50072 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 470.833-7 chr2 121297373 121298118 + 1.16667 NA Intergenic Intergenic -12543 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 366.167-9 chrX 149962644 149963102 + 1.16667 NA intron (NR_027456, intron 9 of 11) intron (NR_027456, intron 9 of 11) 24325 NR_027456 100272228 Hs.496916 NR_027456 ENSG00000235703 LINC00894 - long intergenic non-protein coding RNA 894 ncRNA 198-10 chr14 22524046 22524451 + 1.16667 NA Intergenic MIR|SINE|MIR 32814 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 172.334-4 chr2 119433401 119433594 + 1.16667 NA intron (NM_183240, intron 1 of 1) intron (NM_183240, intron 1 of 1) 1643 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 347.167-10 chr21 35400548 35401036 + 1.16667 NA intron (NR_073512, intron 2 of 2) intron (NR_073512, intron 2 of 2) 179972 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 256.001-3 chr8 127735622 127735878 + 1.16667 NA promoter-TSS (NM_002467) promoter-TSS (NM_002467) 316 NM_001354870 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 221.167-10 chr13 24052561 24052796 + 1.16667 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) 72876 NR_104595 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 196.667-35 chr3 101497494 101497745 + 1.16667 NA intron (NM_001282804, intron 1 of 4) L1MC4|LINE|L1 15593 NM_001282803 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 233.5-14 chr2 39032492 39032794 + 1.16667 NA intron (NM_005633, intron 8 of 22) intron (NM_005633, intron 8 of 22) -72299 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 309.5-20 chr7 121366610 121367387 + 1.16667 NA intron (NM_001040020, intron 5 of 9) intron (NM_001040020, intron 5 of 9) 29310 NM_014888 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 271.667 chr1 158202224 158202863 + 1.16667 NA Intergenic L1MEf|LINE|L1 22596 NM_001319145 912 Hs.1799 NM_001766 ENSG00000158473 CD1D CD1A|R3|R3G1 CD1d molecule protein-coding 207.333-14 chr14 61022780 61023087 + 1.16667 NA intron (NR_033344, intron 5 of 16) intron (NR_033344, intron 5 of 16) -41243 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 226.834-4 chr13 39187408 39187666 + 1.16667 NA Intergenic L1M5|LINE|L1 149081 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 304.667-10 chr2 195498421 195498932 + 1.16667 NA Intergenic Intergenic -158282 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 219-26 chr4 154730727 154731062 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -9947 NM_001301645 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 186.333-39 chr7 132787672 132788094 + 1.16667 NA intron (NR_133671, intron 10 of 10) intron (NR_133671, intron 10 of 10) 28913 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 319.501-3 chr6 27251495 27251845 + 1.16667 NA intron (NM_005865, intron 7 of 11) CpG-23319 3969 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP serine protease 16 protein-coding 285.5-28 chr6 110520737 110521314 + 1.16667 NA Intergenic Intergenic -44412 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 408.667 chr13 21056274 21056709 + 1.16667 NA intron (NM_014572, intron 1 of 7) intron (NM_014572, intron 1 of 7) 5095 NM_014572 26524 Hs.78960 NM_014572 ENSG00000150457 LATS2 KPM large tumor suppressor kinase 2 protein-coding 256.833-11 chr4 94974366 94974744 + 1.16667 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -21677 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 169-45 chr6 125736572 125736826 + 1.16667 NA Intergenic MIRb|SINE|MIR -12933 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 200.334-7 chr2 49324026 49324363 + 1.16667 NA Intergenic L1PA17|LINE|L1 -169667 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 182-17 chr18 61095293 61095585 + 1.16667 NA Intergenic Intergenic -237991 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 338.667-5 chr15 98753599 98754116 + 1.16667 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -30569 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 268-20 chr17 71121106 71121354 + 1.16667 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 80949 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 236.834-2 chr11 7513041 7513275 + 1.16667 NA promoter-TSS (NM_001351855) promoter-TSS (NM_001351855) -607 NR_147792 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 246.667-25 chr7 92636533 92636869 + 1.16667 NA intron (NM_001259, intron 5 of 7) AluSx|SINE|Alu -46311 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 185-19 chr12 117302215 117302567 + 1.16667 NA intron (NM_001204214, intron 1 of 27) AluYe6|SINE|Alu 2661 NM_001204213 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 188.167-21 chr20 40441921 40442125 + 1.16667 NA Intergenic L2a|LINE|L2 247213 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 213.167-32 chr8 132985095 132985331 + 1.16667 NA intron (NM_003235, intron 35 of 47) MER2B|DNA|TcMar-Tigger 61368 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 200.5-32 chr3 109207018 109207206 + 1.16667 NA Intergenic MLT1G1|LTR|ERVL-MaLR 28947 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 370.167-6 chr22 48700242 48700814 + 1.16667 NA intron (NM_001082967, intron 2 of 3) intron (NM_001082967, intron 2 of 3) -79767 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 220.667-15 chr12 95489904 95490194 + 1.16667 NA intron (NM_006838, intron 4 of 10) intron (NM_006838, intron 4 of 10) 15897 NM_001330246 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 208-19 chr18 5456056 5456274 + 1.16667 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 84391 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 204.667-42 chr9 28664058 28664339 + 1.16667 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 55107 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 255.333-16 chr22 25774476 25774884 + 1.16667 NA intron (NM_001318245, intron 7 of 43) intron (NM_001318245, intron 7 of 43) 32492 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 272.501 chr12 38369095 38369449 + 1.16667 NA Intergenic Intergenic 52498 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 259-24 chr22 20495670 20496308 + 1.16667 NA promoter-TSS (NM_032775) promoter-TSS (NM_032775) -194 NR_033825 84861 Hs.517419 NM_032775 ENSG00000099910 KLHL22 KELCHL kelch like family member 22 protein-coding 206.667-14 chr14 19929257 19929528 + 1.16667 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -6216 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 227.5-9 chr1 157252192 157252755 + 1.16667 NA Intergenic Intergenic -113882 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 306.834-10 chr4 119751495 119751775 + 1.16667 NA Intergenic Intergenic 52880 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 178.334-2 chr14 52693860 52694117 + 1.16667 NA intron (NM_014584, intron 1 of 15) intron (NM_014584, intron 1 of 15) 1570 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 174-28 chr2 159651817 159652062 + 1.16667 NA Intergenic L1MB8|LINE|L1 -35338 NM_001289975 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 273.834-8 chr7 134486293 134486574 + 1.16667 NA Intergenic Intergenic -27194 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 385.167-5 chr11 12162232 12162891 + 1.16667 NA intron (NR_144420, intron 3 of 27) intron (NR_144420, intron 3 of 27) 482 NM_001282667 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 353.334-2 chr10 58293485 58294045 + 1.16667 NA Intergenic LTR23|LTR|ERV1 24603 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 168.167-27 chr4 60876887 60877068 + 1.16667 NA Intergenic L1PA13|LINE|L1 -45642 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 176.334-2 chr17 57948728 57948936 + 1.16667 NA intron (NM_001271875, intron 1 of 10) L3b|LINE|CR1 6580 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 224.833-16 chr22 35107821 35108157 + 1.16667 NA Intergenic L1MD1|LINE|L1 41831 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 317.668 chr2 125892956 125893340 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 224837 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 180.167-6 chr10 92628603 92628889 + 1.16667 NA intron (NM_004523, intron 10 of 21) intron (NM_004523, intron 10 of 21) 35616 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 225.501 chr11 58713717 58713963 + 1.16667 NA intron (NM_201648, intron 3 of 5) intron (NM_201648, intron 3 of 5) 18103 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 435.001-2 chr11 45276676 45277125 + 1.16667 NA intron (NM_001247987, intron 1 of 7) L1MB5|LINE|L1 9441 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 364.167-6 chr7 52917990 52918600 + 1.16667 NA Intergenic L1MC1|LINE|L1 -117338 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 331.834-3 chr12 6819509 6820008 + 1.16667 NA 3' UTR (NM_001195017, exon 8 of 8) 3' UTR (NM_001195017, exon 8 of 8) -2063 NM_019858 27239 Hs.631654 NM_014449 ENSG00000250510 GPR162 A-2|GRCA G protein-coupled receptor 162 protein-coding 292.167-15 chr5 27447823 27448299 + 1.16667 NA Intergenic L1M2|LINE|L1 -24231 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 332.167-2 chr13 98898231 98898680 + 1.16667 NA intron (NM_001366682, intron 13 of 53) intron (NM_001366682, intron 13 of 53) 66371 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 247.001 chr1 42055411 42055661 + 1.16667 NA Intergenic MIRb|SINE|MIR -19602 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 289.167-9 chr16 56964677 56965085 + 1.16667 NA intron (NM_001286085, intron 2 of 14) AluJb|SINE|Alu 2931 NM_001286085 1071 Hs.89538 NM_000078 ENSG00000087237 CETP BPIFF|HDLCQ10 cholesteryl ester transfer protein protein-coding 310.167-6 chr2 164004646 164005153 + 1.16667 NA Intergenic Intergenic -268891 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 215.834-10 chr3 106338103 106338461 + 1.16667 NA Intergenic L2b|LINE|L2 -468881 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 229.667-14 chr16 18799161 18799442 + 1.16667 NA intron (NM_015161, intron 1 of 5) AluSx1|SINE|Alu 2069 NM_001313858 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 258.501 chr16 90005275 90005511 + 1.16667 NA 3' UTR (NM_024043, exon 4 of 4) 3' UTR (NM_024043, exon 4 of 4) 4728 NM_024043 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding 195.667-23 chr2 71114327 71114653 + 1.16667 NA intron (NM_032601, intron 2 of 2) L1MC3|LINE|L1 15739 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 325.5-21 chr6 99822819 99823302 + 1.16667 NA Intergenic Intergenic -170978 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 262.501 chr12 86659630 86659869 + 1.16667 NA intron (NM_001351285, intron 2 of 8) LTR41|LTR|ERVL 85400 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 176-15 chr15 73413133 73413389 + 1.16667 NA Intergenic L1ME3A|LINE|L1 -29903 NM_001042367 283677 Hs.743574 NM_001042367 ENSG00000183324 REC114 C15orf60|CT147 REC114 meiotic recombination protein protein-coding 196.334-12 chr6 107881332 107881597 + 1.16667 NA intron (NM_007214, intron 17 of 20) L2c|LINE|L2 -57151 NM_001286408 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 165.334-2 chr16 46974515 46974782 + 1.16667 NA promoter-TSS (NM_005880) promoter-TSS (NM_005880) -974 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 214-39 chr3 94800642 94800984 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -137450 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 190.667-27 chr2 214977069 214977498 + 1.16667 NA intron (NR_103740, intron 35 of 54) intron (NR_103740, intron 35 of 54) 54803 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 203.167-24 chr4 54683546 54683873 + 1.16667 NA intron (NM_000222, intron 1 of 20) intron (NM_000222, intron 1 of 20) 25781 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 313.834 chr11 46015704 46016111 + 1.16667 NA intron (NR_147890, intron 5 of 18) (ATCT)n|Simple_repeat|Simple_repeat 93251 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 194.167-32 chr6 25463449 25463670 + 1.16667 NA intron (NM_001173977, intron 8 of 36) intron (NM_001173977, intron 8 of 36) 184185 NM_017640 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 215.5-33 chr9 105569319 105569681 + 1.16667 NA intron (NM_001351498, intron 1 of 9) intron (NM_001351498, intron 1 of 9) 11369 NM_001351499 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 450.834 chr17 81440189 81440919 + 1.16667 NA intron (NM_001291324, intron 3 of 27) intron (NM_001291324, intron 3 of 27) 10634 NR_036152 100422944 NR_036152 ENSG00000266189 MIR3186 mir-3186 microRNA 3186 ncRNA 395.001-3 chr3 143363585 143363954 + 1.16667 NA intron (NM_173653, intron 13 of 15) intron (NM_173653, intron 13 of 15) 21523 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 188-49 chr7 19513136 19513389 + 1.16667 NA Intergenic L1M5|LINE|L1 192174 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 179.667-53 chrX 116883514 116883784 + 1.16667 NA Intergenic L1M1|LINE|L1 -65789 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 220.167-21 chr2 97642957 97643299 + 1.16667 NA Intergenic Intergenic -2934 NM_001862 1329 Hs.1342 NM_001862 ENSG00000135940 COX5B COXVB cytochrome c oxidase subunit 5B protein-coding 191.167-21 chr4 64505549 64505875 + 1.16667 NA Intergenic L1MC1|LINE|L1 -96252 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 177.167-10 chr14 54338878 54339146 + 1.16667 NA Intergenic Intergenic -57856 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 298.333-10 chr18 9055375 9055925 + 1.16667 NA Intergenic Intergenic -47049 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 698.001 chr10 122298496 122299212 + 1.16667 NA intron (NM_001318189, intron 8 of 15) MIR|SINE|MIR 27558 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 203-20 chr2 237832753 237833269 + 1.16667 NA intron (NM_001080504, intron 13 of 15) intron (NM_001080504, intron 13 of 15) -26612 NM_005855 10267 Hs.471783 NM_005855 ENSG00000132329 RAMP1 - receptor activity modifying protein 1 protein-coding 240.667-26 chr3 8896737 8897118 + 1.16667 NA intron (NM_020165, intron 11 of 12) intron (NM_020165, intron 11 of 12) 66545 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 221.001-2 chr16 49449637 49449826 + 1.16667 NA Intergenic L1ME1|LINE|L1 68854 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 297.001 chr2 41776435 41776925 + 1.16667 NA Intergenic Intergenic -100875 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 281.334-14 chrX 65581848 65582090 + 1.16667 NA Intergenic Intergenic -29548 NR_033742 83957 Hs.652967 NR_033742 ENSG00000227942 FRMD8P1 - FERM domain containing 8 pseudogene 1 pseudo 330.667-9 chr3 57340918 57341355 + 1.16667 NA intron (NM_001366028, intron 60 of 73) L1MA5A|LINE|L1 -48451 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 167.834 chr10 84262642 84263055 + 1.16667 NA Intergenic Intergenic -17132 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 290.833-5 chr16 86146458 86146944 + 1.16667 NA Intergenic L1MEc|LINE|L1 -49480 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 245.001-3 chr4 58941475 58941704 + 1.16667 NA Intergenic Intergenic -42693 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 280.333-25 chr7 70564951 70565496 + 1.16667 NA intron (NM_015570, intron 5 of 18) L1MC5|LINE|L1 -566921 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 164.834 chr1 169976016 169976258 + 1.16667 NA intron (NM_014970, intron 16 of 19) MIRb|SINE|MIR -82178 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 201.667-25 chr2 219543587 219543947 + 1.16667 NA promoter-TSS (NM_001195731) promoter-TSS (NM_001195731) 42 NM_024536 79586 Hs.516711 NM_024536 ENSG00000123989 CHPF CHSY2|CSS2 chondroitin polymerizing factor protein-coding 315.833-10 chr4 94595255 94595562 + 1.16667 NA intron (NM_006457, intron 7 of 12) intron (NM_006457, intron 7 of 12) 143466 NM_001256429 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 289-22 chr7 3402536 3402998 + 1.16667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 101515 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 225-9 chr16 17394817 17395171 + 1.16667 NA intron (NM_022166, intron 1 of 11) THE1D|LTR|ERVL-MaLR 75966 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 208.667-6 chr10 79036620 79036867 + 1.16667 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 30705 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 289-21 chr6 93319198 93319764 + 1.16667 NA intron (NM_004440, intron 5 of 16) L2a|LINE|L2 100078 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 214-28 chr2 48693309 48693536 + 1.16667 NA intron (NM_000233, intron 10 of 10) MIRb|SINE|MIR 62302 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 240-57 chr9 80004453 80004737 + 1.16667 NA intron (NR_121212, intron 3 of 4) L1M5|LINE|L1 29572 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 250.334-7 chr6 115846983 115847360 + 1.16667 NA Intergenic Intergenic -191560 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 295.167-18 chr6 54698943 54699405 + 1.16667 NA Intergenic Intergenic -147597 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 189.5-30 chr4 93194093 93194309 + 1.16667 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -634552 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 344.833-9 chr5 131027646 131028235 + 1.16667 NA Intergenic Intergenic 137316 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 635.667-3 chr15 70892591 70893679 + 1.16667 NA promoter-TSS (NM_020147) promoter-TSS (NM_020147) 692 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 315.167-6 chr12 131116251 131116536 + 1.16667 NA intron (NM_198827, intron 18 of 24) intron (NM_198827, intron 18 of 24) -48618 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 245.167-6 chr14 61721872 61722240 + 1.16667 NA intron (NM_181054, intron 4 of 13) intron (NM_181054, intron 4 of 13) 24434 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 686.167-5 chr6 26595916 26596853 + 1.16667 NA promoter-TSS (NM_013375) promoter-TSS (NM_013375) -569 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 246.5-28 chr5 100805905 100806311 + 1.16667 NA TTS (NM_005668) TTS (NM_005668) 10457 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 215.333-36 chr4 34419893 34420248 + 1.16667 NA Intergenic Intergenic -150323 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 244.834-6 chr8 82775310 82775519 + 1.16667 NA Intergenic Intergenic -136690 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 175-41 chr3 141367337 141367494 + 1.16667 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) -19010 NM_001350099 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 181.167-15 chr14 70324472 70324662 + 1.16667 NA TTS (NM_001202547) TTS (NM_001202547) 35116 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 192.334 chr1 152192571 152192796 + 1.16667 NA Intergenic MIR|SINE|MIR 31513 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 186.667-44 chr3 96812850 96813319 + 1.16667 NA Intergenic Intergenic -1510 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 226.334-4 chr12 89723741 89723964 + 1.16667 NA Intergenic Intergenic -14486 NM_001366520 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 270-40 chr8 80727792 80728306 + 1.16667 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 146419 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 294.5-2 chr1 94207426 94207744 + 1.16667 NA intron (NM_001328665, intron 4 of 21) intron (NM_001328665, intron 4 of 21) 29999 NM_001328667 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 172.834-5 chr8 124363106 124363302 + 1.16667 NA intron (NM_194291, intron 1 of 6) MER57A-int|LTR|ERV1 9495 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 212.5-26 chr4 40583995 40584256 + 1.16667 NA intron (NM_001371114, intron 1 of 5) AluJb|SINE|Alu 45739 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 185.834-10 chr6 130084381 130084768 + 1.16667 NA intron (NM_001007102, intron 14 of 21) intron (NM_001007102, intron 14 of 21) 64930 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 187.5-15 chr12 75204733 75204989 + 1.16667 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 4887 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 344.834-2 chr14 31082225 31082547 + 1.16667 NA intron (NM_007077, intron 5 of 5) intron (NM_007077, intron 5 of 5) 55743 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 221.167-5 chr10 122262881 122263122 + 1.16667 NA Intergenic L1MB2|LINE|L1 -8295 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 240.667-25 chr21 19982164 19982409 + 1.16667 NA Intergenic MLT1J|LTR|ERVL-MaLR -82531 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 183.667-46 chr5 41640609 41640768 + 1.16667 NA Intergenic Intergenic -130087 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 187.834-13 chrX 120664384 120664718 + 1.16667 NA Intergenic Intergenic -34401 NM_152692 29071 Hs.643920 NM_152692 ENSG00000171155 C1GALT1C1 C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS C1GALT1 specific chaperone 1 protein-coding 303.168 chr5 144148581 144148989 + 1.16667 NA Intergenic MER58D|DNA|hAT-Charlie 21874 NM_001024947 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 238.833-4 chr10 84896437 84896907 + 1.16667 NA Intergenic Intergenic 302233 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 258.167-2 chr1 209106591 209106910 + 1.16667 NA Intergenic Intergenic 134296 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 216.167-14 chr14 44149737 44149979 + 1.16667 NA Intergenic Intergenic 357425 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 424.167-2 chr3 138332415 138333064 + 1.16667 NA Intergenic Intergenic -2888 NM_178130 347736 Hs.660992 NM_178130 ENSG00000181322 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 305.667-8 chr2 1550925 1551476 + 1.16667 NA Intergenic Intergenic 136792 NM_175722 7173 Hs.467554 NM_000547 ENSG00000115705 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 288.5-7 chr12 40062641 40063190 + 1.16667 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 43166 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 203.834-2 chr11 6020053 6020365 + 1.16667 NA Intergenic Intergenic 7532 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 210.834-10 chrX 109886378 109886562 + 1.16667 NA Intergenic Intergenic 16069 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 209-19 chr2 165483517 165483804 + 1.16667 NA intron (NM_001172173, intron 1 of 6) MLT1A0|LTR|ERVL-MaLR 13962 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 211-15 chr15 69164438 69164824 + 1.16667 NA intron (NM_001324093, intron 2 of 5) intron (NM_001324093, intron 2 of 5) 3996 NM_001324093 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 227.167-18 chr3 67087287 67087644 + 1.16667 NA Intergenic L1MA3|LINE|L1 89158 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 265.167-6 chr16 50509772 50510048 + 1.16667 NA Intergenic Intergenic -38486 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 252-24 chr15 86457352 86457705 + 1.16667 NA intron (NM_152336, intron 18 of 24) L4_C_Mam|LINE|RTE-X -140560 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 297.333-13 chr4 36363222 36363557 + 1.16667 NA Intergenic L1MC3|LINE|L1 63039 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 252-11 chr10 76547754 76548159 + 1.16667 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -340088 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 268.833-13 chr20 35209011 35209370 + 1.16667 NA intron (NM_001355008, intron 4 of 14) L2c|LINE|L2 -17500 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 243.5-4 chr12 76075534 76075843 + 1.16667 NA intron (NM_001330232, intron 1 of 13) intron (NM_001330232, intron 1 of 13) 8997 NM_001307924 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 248.167-17 chr3 65446716 65447106 + 1.16667 NA intron (NM_001365904, intron 7 of 24) intron (NM_001365904, intron 7 of 24) -446905 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 309.667-18 chr5 10322651 10323041 + 1.16667 NA Intergenic MamRep1151|LTR?|LTR? -14944 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 275.167-7 chr11 107425558 107425921 + 1.16667 NA intron (NM_152434, intron 8 of 17) intron (NM_152434, intron 8 of 17) 32107 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 250.501-3 chr4 137817657 137818037 + 1.16667 NA Intergenic MIRb|SINE|MIR -271167 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 196.834-5 chr7 37200392 37200634 + 1.16667 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 153155 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 185.667-11 chr11 10001783 10002009 + 1.16667 NA intron (NM_030962, intron 7 of 39) intron (NM_030962, intron 7 of 39) 162754 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 237.167-22 chr7 9926097 9926557 + 1.16667 NA Intergenic L2|LINE|L2 292057 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 271.5-11 chr14 104723689 104724202 + 1.16667 NA promoter-TSS (NM_152328) promoter-TSS (NM_152328) -252 NM_152328 122622 Hs.592327 NM_152328 ENSG00000185100 ADSSL1 Adss1|MPD5 adenylosuccinate synthase like 1 protein-coding 166-43 chr2 20677226 20677471 + 1.16667 NA 3' UTR (NM_182828, exon 2 of 2) 3' UTR (NM_182828, exon 2 of 2) 10204 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 188.834-8 chr17 68906921 68907089 + 1.16667 NA intron (NM_001288985, intron 18 of 39) intron (NM_001288985, intron 18 of 39) 48387 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 251.167-7 chr15 54040064 54040394 + 1.16667 NA intron (NM_001329919, intron 2 of 31) LTR16C|LTR|ERVL 27581 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 201.667-19 chr18 52190516 52190699 + 1.16667 NA Intergenic MamTip2|DNA|hAT-Tip100 -149590 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 184.833-22 chr3 39831528 39831828 + 1.16667 NA intron (NM_001284424, intron 1 of 15) Charlie5|DNA|hAT-Charlie 22018 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 180-60 chr8 124141525 124141740 + 1.16667 NA intron (NR_103547, intron 1 of 4) MIR3|SINE|MIR 29890 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 286.334-6 chr20 39843835 39844219 + 1.16667 NA Intergenic Intergenic -160434 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 181.834 chr1 85102167 85102436 + 1.16667 NA intron (NM_001288563, intron 12 of 21) L1MA4|LINE|L1 -31493 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 263.834-7 chr4 42174249 42174523 + 1.16667 NA Intergenic Intergenic -21731 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 240.334 chr10 50898803 50899405 + 1.16667 NA Intergenic MIRb|SINE|MIR -13429 NM_138932 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 260.333-19 chr5 124090818 124091150 + 1.16667 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 347536 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 214.5-11 chr14 21732171 21732489 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -61313 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 222.5-35 chr8 110864189 110864500 + 1.16667 NA Intergenic Intergenic 163089 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 269.333-15 chr3 83586830 83587287 + 1.16667 NA Intergenic L1MA5A|LINE|L1 1282517 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 177.334-8 chr5 23899199 23899370 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -52064 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 166-42 chr19 46001672 46001923 + 1.16667 NA intron (NM_001267723, intron 1 of 13) Charlie4z|DNA|hAT-Charlie 6330 NM_001267723 729440 Hs.515479 NM_001080402 ENSG00000104983 CCDC61 - coiled-coil domain containing 61 protein-coding 290.334-7 chr17 28278816 28279452 + 1.16667 NA intron (NR_028334, intron 2 of 2) AluY|SINE|Alu 28248 NR_028334 284085 Hs.371796 NM_173624 ENSG00000265480 KRT18P55 - keratin 18 pseudogene 55 pseudo 321.167-12 chr2 223957268 223957644 + 1.16667 NA promoter-TSS (NM_022915) promoter-TSS (NM_022915) -7 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 259.501-4 chr2 217788966 217789326 + 1.16667 NA Intergenic Intergenic -32553 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 222.834-2 chr16 14075738 14076060 + 1.16667 NA intron (NM_001365419, intron 1 of 4) L1MC5a|LINE|L1 4580 NM_001365412 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 191.5-11 chr11 82287647 82287868 + 1.16667 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 116156 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 183.5-43 chr7 89714898 89715144 + 1.16667 NA Intergenic Intergenic -404379 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 241.334-7 chr6 45304118 45304425 + 1.16667 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -24046 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 260.334-12 chrX 131753402 131753762 + 1.16667 NA intron (NR_026975, intron 9 of 12) AluSp|SINE|Alu 77061 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 294.167-2 chr1 43599822 43600190 + 1.16667 NA intron (NM_001329140, intron 12 of 30) intron (NM_001329140, intron 12 of 30) -50143 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 217-9 chr15 96017789 96018037 + 1.16667 NA Intergenic AluSq2|SINE|Alu 109928 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 436.667-2 chr10 96129139 96129753 + 1.16667 NA promoter-TSS (NR_138482) promoter-TSS (NR_138482) -269 NM_001278524 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 231.5-35 chr8 22864490 22864891 + 1.16667 NA intron (NM_001363233, intron 3 of 6) intron (NM_001363233, intron 3 of 6) -13282 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 218.834-3 chr14 40356868 40357436 + 1.16667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -597559 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 209.001 chr10 74008323 74008510 + 1.16667 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 10300 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 165.5-34 chr5 53684422 53684563 + 1.16667 NA Intergenic MIR|SINE|MIR 123853 NM_001318051 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 219.834-3 chr1 187321468 187321799 + 1.16667 NA intron (NR_126347, intron 2 of 3) intron (NR_126347, intron 2 of 3) -121995 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 173.667-40 chr5 2690780 2690984 + 1.16667 NA Intergenic MLT1G-int|LTR|ERVL-MaLR -21709 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 276.334-9 chr4 61085686 61085999 + 1.16667 NA Intergenic Intergenic -57814 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 314.168 chr1 246112010 246112448 + 1.16667 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 305183 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 173.5-32 chr18 76002275 76002529 + 1.16667 NA Intergenic Intergenic -120596 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 262.5-32 chrX 132631739 132632179 + 1.16667 NA intron (NM_147175, intron 3 of 3) intron (NM_147175, intron 3 of 3) -35683 NR_046691 100874102 Hs.619341 NR_046691 ENSG00000235849 HS6ST2-AS1 - HS6ST2 antisense RNA 1 ncRNA 233.834 chr1 55695501 55695824 + 1.16667 NA Intergenic Intergenic 249301 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 268.334 chr11 69639871 69640226 + 1.16667 NA Intergenic CpG -1057 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 226.834 chr1 159704351 159704565 + 1.16667 NA Intergenic Intergenic 10131 NM_001329058 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 207.833-26 chr7 4612838 4613126 + 1.16667 NA Intergenic Intergenic -69313 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 212-36 chr4 76934827 76935122 + 1.16667 NA Intergenic L1M5|LINE|L1 -14778 NM_018243 55752 Hs.128199 NM_018243 ENSG00000138758 SEPTIN11 SEPT11 septin 11 protein-coding 246.167-3 chr10 84878221 84878514 + 1.16667 NA Intergenic Intergenic 320538 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 306.668 chr12 27331417 27331828 + 1.16667 NA Intergenic MIRc|SINE|MIR -1214 NM_020183 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 190.667-16 chr12 69053267 69053452 + 1.16667 NA Intergenic Intergenic -90119 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 171.833-30 chr8 140990719 140990954 + 1.16667 NA intron (NM_001352737, intron 1 of 32) intron (NM_001352737, intron 1 of 32) 10168 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 319-20 chrX 94614707 94615048 + 1.16667 NA Intergenic L1M4|LINE|L1 448349 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 288.834-2 chr11 16935711 16936039 + 1.16667 NA intron (NM_001329630, intron 3 of 26) Tigger14a|DNA|TcMar-Tigger -9853 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 420-7 chr2 35379230 35379930 + 1.16667 NA Intergenic Intergenic -91825 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 352.834-4 chr19 58027934 58028353 + 1.16667 NA Intergenic AluJo|SINE|Alu -5882 NM_182572 284312 Hs.643437 NM_182572 ENSG00000152467 ZSCAN1 MZF-1|ZNF915 zinc finger and SCAN domain containing 1 protein-coding 166-49 chr22 23141418 23141609 + 1.16667 NA intron (NM_014433, intron 1 of 6) MIR|SINE|MIR 477 NM_014433 27156 Hs.526920 NM_014433 ENSG00000100218 RSPH14 RTDR1 radial spoke head 14 homolog protein-coding 213.667-33 chr3 184820375 184820921 + 1.16667 NA intron (NM_001349295, intron 1 of 46) intron (NM_001349295, intron 1 of 46) 8141 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 203.501-5 chr5 125493600 125493812 + 1.16667 NA intron (NR_109887, intron 1 of 3) intron (NR_109887, intron 1 of 3) 445 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 193.5-12 chr14 73671617 73671849 + 1.16667 NA intron (NM_001201366, intron 6 of 8) L1ME4c|LINE|L1 26747 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 175-52 chr7 6484224 6484489 + 1.16667 NA promoter-TSS (NM_006854) promoter-TSS (NM_006854) -204 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 313.334-6 chr8 135886852 135887257 + 1.16667 NA Intergenic Intergenic 429598 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 519.668 chr1 52404465 52405172 + 1.16667 NA promoter-TSS (NM_001190819) promoter-TSS (NM_001190819) 216 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 175.833-33 chr3 184345807 184346238 + 1.16667 NA TTS (NM_004366) TTS (NM_004366) 7189 NM_001366133 131408 Hs.591307 NM_144635 ENSG00000175182 FAM131A C3orf40|FLAT715|PRO1378 family with sequence similarity 131 member A protein-coding 288.501-3 chr2 157175844 157176124 + 1.16667 NA Intergenic Intergenic -81721 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 202.667-30 chr3 59772378 59772675 + 1.16667 NA intron (NM_001354590, intron 7 of 8) MIR|SINE|MIR -114029 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 299.834 chr10 83269496 83269924 + 1.16667 NA Intergenic Intergenic 407379 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 191.834 chr10 62582734 62583243 + 1.16667 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 62540 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 285.5-16 chr22 41597417 41597850 + 1.16667 NA TTS (NM_015704) TTS (NM_015704) -7793 NM_002676 5372 Hs.75835 NM_002676 ENSG00000100417 PMM1 PMM 1|PMMH-22|Sec53 phosphomannomutase 1 protein-coding 392.501 chr12 2885166 2885848 + 1.16667 NA exon (NM_001257097, exon 2 of 3) exon (NM_001257097, exon 2 of 3) -5384 NM_001160408 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 TUB like protein 3 protein-coding 331.667-5 chr10 97244016 97244604 + 1.16667 NA intron (NM_032900, intron 7 of 11) intron (NM_032900, intron 7 of 11) 26347 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 350.001 chr1 58065357 58065829 + 1.16667 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 184910 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 190.334-10 chr8 121101464 121101889 + 1.16667 NA Intergenic Intergenic -289630 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 199.667-7 chr1 201587990 201588250 + 1.16667 NA Intergenic L1MB7|LINE|L1 -60202 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 250.167-12 chr3 33229653 33229891 + 1.16667 NA Intergenic LTR86B2|LTR|ERVL -10962 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 263.5 chr1 41115030 41115436 + 1.16667 NA intron (NM_001350668, intron 6 of 13) L1MEd|LINE|L1 46199 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 190.5-53 chr8 62641350 62641673 + 1.16667 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -336350 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 171.333-16 chr14 70174937 70175231 + 1.16667 NA intron (NM_033262, intron 1 of 7) intron (NM_033262, intron 1 of 7) -12024 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 277.167-10 chr8 89825323 89825826 + 1.16667 NA Intergenic Intergenic 67758 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 219.167-15 chr6 154869479 154869825 + 1.16667 NA Intergenic Intergenic 16292 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 213.334-11 chr5 10928456 10928732 + 1.16667 NA Intergenic L1MEg|LINE|L1 -167360 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 259.167-8 chr3 107762703 107762998 + 1.16667 NA intron (NM_001276286, intron 10 of 16) Tigger4b|DNA|TcMar-Tigger 115218 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 334.001 chr12 14394623 14395019 + 1.16667 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 9540 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 178.834 chr10 68046176 68046332 + 1.16667 NA intron (NM_001278185, intron 3 of 23) intron (NM_001278185, intron 3 of 23) 29029 NM_001278186 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 214.833-16 chr5 150161742 150162005 + 1.16667 NA Intergenic Intergenic -4905 NM_001804 1044 Hs.1545 NM_001804 ENSG00000113722 CDX1 - caudal type homeobox 1 protein-coding 310-22 chr5 26584682 26585125 + 1.16667 NA Intergenic Intergenic 453683 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 186.667-19 chr11 73759033 73759345 + 1.16667 NA intron (NM_198896, intron 1 of 7) intron (NM_198896, intron 1 of 7) 904 NM_001243719 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 221.167-30 chr9 81029491 81029686 + 1.16667 NA Intergenic Intergenic 659947 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 299.667-2 chr11 24002835 24003189 + 1.16667 NA Intergenic L1MB3|LINE|L1 -494041 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 314.334-5 chr10 34254617 34255110 + 1.16667 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -482183 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 262.834-2 chr2 113045112 113045386 + 1.16667 NA intron (NM_173178, intron 1 of 4) L1MEc|LINE|L1 7618 NM_014438 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 259.834-3 chr19 33794678 33794920 + 1.16667 NA Intergenic Intergenic -2071 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 201.333-51 chr8 78341501 78341832 + 1.16667 NA Intergenic MER41E|LTR|ERV1 -174674 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 196-32 chr3 127236564 127236744 + 1.16667 NA Intergenic L1M5|LINE|L1 43523 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 295.667-23 chr9 13231066 13231423 + 1.16667 NA intron (NM_003829, intron 3 of 45) L1ME3A|LINE|L1 48320 NM_001261406 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 196.5-36 chr6 27842444 27842651 + 1.16667 NA Intergenic Intergenic 3885 NM_003520 8341 Hs.534368 NM_003520 ENSG00000233822 HIST1H2BN H2B/d|H2BFD histone cluster 1 H2B family member n protein-coding 292.167-21 chr7 37700235 37700611 + 1.16667 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 16657 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 257.5-28 chr7 35849065 35849386 + 1.16667 NA intron (NM_001363715, intron 3 of 13) intron (NM_001363715, intron 3 of 13) 48006 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 300.167-12 chr6 148176838 148177369 + 1.16667 NA Intergenic Intergenic -95225 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 178.833-25 chr21 22855990 22856295 + 1.16667 NA Intergenic Intergenic -223142 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 187.334-7 chr3 20183284 20183549 + 1.16667 NA intron (NR_131179, intron 2 of 6) intron (NR_131179, intron 2 of 6) 2790 NM_001012410 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 237.167-8 chr15 56411843 56412218 + 1.16667 NA intron (NM_198524, intron 9 of 12) intron (NM_198524, intron 9 of 12) 46606 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 226.167-6 chr12 2384112 2384440 + 1.16667 NA intron (NM_199460, intron 3 of 49).2 L3b|LINE|CR1 114500 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 240.001-4 chr9 96299657 96299934 + 1.16667 NA intron (NM_000197, intron 1 of 10) intron (NM_000197, intron 1 of 10) 2381 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 321.834-6 chr4 150007386 150007864 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR -70820 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 245.167-13 chr6 53349667 53349935 + 1.16667 NA promoter-TSS (NM_021814) promoter-TSS (NM_021814) -622 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 244.667-27 chr5 85045626 85045881 + 1.16667 NA Intergenic L1PA16|LINE|L1 -660873 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 243.5-28 chr6 46727678 46728158 + 1.16667 NA intron (NM_001168357, intron 1 of 11) MLT1D|LTR|ERVL-MaLR 7457 NM_005084 7941 Hs.584823 NM_005084 ENSG00000146070 PLA2G7 LDL-PLA2|LP-PLA2|PAFAD|PAFAH phospholipase A2 group VII protein-coding 277.667-11 chr16 86281394 86281766 + 1.16667 NA intron (NR_104139, intron 1 of 5) intron (NR_104139, intron 1 of 5) 4667 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 219.833-14 chr2 4354569 4354838 + 1.16667 NA Intergenic LTR41|LTR|ERVL 301519 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 283.833-9 chr22 25145890 25146328 + 1.16667 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -33417 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 338.5-11 chr5 110029841 110030344 + 1.16667 NA Intergenic Intergenic 146910 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 299.167-9 chr12 56785765 56786078 + 1.16667 NA intron (NM_003725, intron 4 of 4) intron (NM_003725, intron 4 of 4) 22597 NM_003725 8630 Hs.524513 NM_003725 ENSG00000025423 HSD17B6 HSE|RODH|SDR9C6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding 323.667-24 chr8 124062106 124062591 + 1.16667 NA intron (NM_001039112, intron 25 of 40) L1ME5|LINE|L1 -21566 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 222.834-12 chr9 29528757 29529013 + 1.16667 NA Intergenic L1M4|LINE|L1 -315284 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 314.5-2 chr1 181714969 181715332 + 1.16667 NA intron (NM_001205293, intron 8 of 47) intron (NM_001205293, intron 8 of 47) 231633 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 244.5-8 chr14 25951100 25951466 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 602147 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 307.667-8 chr17 17845070 17845482 + 1.16667 NA 3' UTR (NM_001288789, exon 13 of 13) 3' UTR (NM_001288789, exon 13 of 13) -8265 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP1|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 274.334-6 chr5 51048274 51048739 + 1.16667 NA Intergenic Intergenic -78319 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 487.5-2 chr1 93797633 93798246 + 1.16667 NA intron (NM_001261408, intron 2 of 13) ERV24B_Prim-int|LTR|ERV1 -22556 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 414.333-2 chr19 44890446 44890981 + 1.16667 NA promoter-TSS (NM_001128917) promoter-TSS (NM_001128917) -507 NM_001128916 10452 Hs.655909 NM_006114 ENSG00000130204 TOMM40 C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40 translocase of outer mitochondrial membrane 40 protein-coding 339.833-9 chr5 100541391 100541951 + 1.16667 NA intron (NM_198507, intron 1 of 2) intron (NM_198507, intron 1 of 2) 6297 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 321.833-10 chr5 91381443 91381934 + 1.16667 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) 1341 NR_027435 100129716 Hs.116364 NR_027435 ENSG00000281357 ARRDC3-AS1 - ARRDC3 antisense RNA 1 ncRNA 402.667-13 chr20 62822902 62823425 + 1.16667 NA intron (NM_001853, intron 10 of 31) AluJo|SINE|Alu 6113 NM_001853 1299 Hs.716639 NM_001853 ENSG00000092758 COL9A3 DJ885L7.4.1|EDM3|IDD|MED collagen type IX alpha 3 chain protein-coding 199.5-46 chr8 133230822 133231173 + 1.16667 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 39958 NM_003882 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 194.167-33 chr6 90284181 90284408 + 1.16667 NA intron (NM_021813, intron 1 of 8) intron (NM_021813, intron 1 of 8) 12549 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 359.834 chr19 47113374 47113862 + 1.16667 NA intron (NM_015168, intron 1 of 14) CpG 158 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 169.834-2 chr12 25914503 25914696 + 1.16667 NA Intergenic Intergenic -40520 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 229-27 chr6 140612091 140612488 + 1.16667 NA Intergenic Intergenic -71525 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 359.333-17 chr8 143220048 143220606 + 1.16667 NA Intergenic Intergenic 7109 NM_178172 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 188-30 chr21 17788893 17789172 + 1.16667 NA TTS (NM_001100421) TTS (NM_001100421) 3477 NR_038870 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 186.834-2 chr11 80365002 80365248 + 1.16667 NA Intergenic Intergenic 397678 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 234.334-3 chr11 83363903 83364185 + 1.16667 NA Intergenic Intergenic -77637 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 183.167-8 chr11 86359789 86359993 + 1.16667 NA Intergenic Intergenic -14845 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 164.334 chr11 5485737 5486230 + 1.16667 NA intron (NM_001005567, intron 1 of 4) MLT1B|LTR|ERVL-MaLR -2702 NM_001005163 390066 Hs.553734 NM_001005163 ENSG00000181609 OR52D1 OR11-43 olfactory receptor family 52 subfamily D member 1 protein-coding 346.5-8 chr2 159035786 159036216 + 1.16667 NA intron (NM_001350063, intron 2 of 24) intron (NM_001350063, intron 2 of 24) 67361 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 267.834-5 chr4 180630138 180630530 + 1.16667 NA Intergenic Intergenic 528815 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 206.834-6 chr14 75709637 75709824 + 1.16667 NA intron (NM_015072, intron 9 of 31) FLAM_C|SINE|Alu 48484 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 192.167-11 chr10 122141107 122141666 + 1.16667 NA intron (NM_001291876, intron 6 of 19) intron (NM_001291876, intron 6 of 19) -22244 NM_006997 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 166-66 chr8 103159773 103159966 + 1.16667 NA intron (NR_109954, intron 2 of 2) L1MC5a|LINE|L1 5255 NR_036106 100422992 NR_036106 ENSG00000265657 MIR3151 mir-3151 microRNA 3151 ncRNA 274-26 chr5 131648849 131649336 + 1.16667 NA intron (NM_133372, intron 16 of 17) L1MB4|LINE|L1 -13863 NM_001164387 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 357.834-8 chr6 131925280 131925790 + 1.16667 NA Intergenic MIRb|SINE|MIR 25837 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 247.834-2 chr14 83071231 83071486 + 1.16667 NA Intergenic L1MA9|LINE|L1 428726 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 230.5-21 chr3 25354823 25355129 + 1.16667 NA intron (NM_001290300, intron 1 of 7) MIR|SINE|MIR 14174 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 218.501-2 chr21 20524097 20524383 + 1.16667 NA Intergenic Intergenic -265555 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 297.501 chr10 115928487 115929003 + 1.16667 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 266044 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 211-30 chr2 222913181 222913537 + 1.16667 NA intron (NM_004457, intron 4 of 16) intron (NM_004457, intron 4 of 16) 52323 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 241.167-27 chrX 87241633 87241905 + 1.16667 NA Intergenic L1M1|LINE|L1 -276033 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 198.334-2 chr2 6452764 6452996 + 1.16667 NA Intergenic AluJo|SINE|Alu -77458 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 173.5-40 chr3 14617362 14617689 + 1.16667 NA Intergenic MIRb|SINE|MIR -34221 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 186.5-5 chr12 109573446 109573714 + 1.16667 NA promoter-TSS (NM_001114185) promoter-TSS (NM_001114185) -76 NM_052845 326625 Hs.12106 NM_052845 ENSG00000139428 MMAB ATR|CFAP23|cblB|cob metabolism of cobalamin associated B protein-coding 187.001 chr1 211143157 211143317 + 1.16667 NA Intergenic AluJo|SINE|Alu -9089 NM_172362 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 288.667-11 chr2 40891581 40891968 + 1.16667 NA Intergenic L1M2|LINE|L1 -379339 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 223.667-14 chr13 73542695 73542908 + 1.16667 NA Intergenic Intergenic -21443 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 286.167-6 chr10 89451430 89451999 + 1.16667 NA intron (NM_213606, intron 3 of 7) MER45B|DNA|hAT-Tip100 -4277 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 195.167-38 chr8 119022914 119023202 + 1.16667 NA intron (NM_001324095, intron 1 of 7) L2a|LINE|L2 -44189 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 178.5-25 chr20 20989955 20990181 + 1.16667 NA Intergenic (TAATTTT)n|Simple_repeat|Simple_repeat 116290 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 299.001 chr14 19885809 19886093 + 1.16667 NA Intergenic L1M4a2|LINE|L1 9683 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 369.167-5 chr2 125608149 125608620 + 1.16667 NA Intergenic Intergenic 509601 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 168.334 chr11 55939135 55939356 + 1.16667 NA Intergenic Intergenic -2845 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 300.5-15 chr22 17459431 17459871 + 1.16667 NA intron (NM_001290047, intron 1 of 18) intron (NM_001290047, intron 1 of 18) 90191 NM_001290047 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2 histone acetyl-lysine reader protein-coding 309.334-3 chr18 10416148 10416637 + 1.16667 NA Intergenic Intergenic -2022 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 212-17 chr12 31713024 31713291 + 1.16667 NA intron (NM_001278411, intron 1 of 6) intron (NM_001278411, intron 1 of 6) 15864 NM_001113402 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 170.334-10 chr8 114083062 114083214 + 1.16667 NA Intergenic Intergenic -646199 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 243.667-17 chr18 45944497 45944862 + 1.16667 NA intron (NM_020964, intron 7 of 43) AluSx|SINE|Alu 22650 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 221.167-8 chr11 98311593 98311817 + 1.16667 NA Intergenic Intergenic -709244 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 334-11 chr3 183447079 183447562 + 1.16667 NA promoter-TSS (NR_038302) promoter-TSS (NR_038302) -288 NR_038302 100505687 Hs.551751 NR_038301 ENSG00000240024 LINC00888 - long intergenic non-protein coding RNA 888 ncRNA 209.5-11 chr13 103643005 103643483 + 1.16667 NA Intergenic L1MA4A|LINE|L1 218044 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 202.334-5 chr18 6971278 6971537 + 1.16667 NA intron (NM_005559, intron 48 of 62) intron (NM_005559, intron 48 of 62) 16730 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 164-13 chr12 4431985 4432202 + 1.16667 NA Intergenic Intergenic 13521 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 185.333-60 chr9 103108549 103108777 + 1.16667 NA Intergenic L1PA16|LINE|L1 113330 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 331.167-11 chr3 179750481 179750893 + 1.16667 NA intron (NM_003940, intron 13 of 20) intron (NM_003940, intron 13 of 20) 97647 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 210-41 chr7 11699382 11699694 + 1.16667 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 132660 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 206.667 chr1 29263436 29263686 + 1.16667 NA intron (NM_133177, intron 7 of 30) L1MB7|LINE|L1 27039 NM_133178 10076 Hs.19718 NM_005704 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase receptor type U protein-coding 179.5-38 chr5 27084900 27085160 + 1.16667 NA Intergenic Intergenic -46444 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 195.5-21 chr21 15084413 15084728 + 1.16667 NA Intergenic Intergenic -19570 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 259.001-2 chr1 209439344 209439641 + 1.16667 NA Intergenic MIRb|SINE|MIR 7359 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 363.833-3 chr16 7020311 7020892 + 1.16667 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 246792 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 196.667-21 chr16 87236522 87236841 + 1.16667 NA Intergenic Intergenic 24566 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 175.333-54 chr7 135679678 135679994 + 1.16667 NA Intergenic L2c|LINE|L2 17322 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 179.333-50 chr8 111199921 111200308 + 1.16667 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) 36089 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 273.334-4 chr4 31177839 31178169 + 1.16667 NA intron (NR_125935, intron 2 of 4) intron (NR_125935, intron 2 of 4) 6860 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 204.5-19 chr2 60740261 60740558 + 1.16667 NA Intergenic Intergenic -15859 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 267-5 chr10 110972968 110973443 + 1.16667 NA intron (NM_001269039, intron 2 of 7) intron (NM_001269039, intron 2 of 7) -15721 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 238.334-15 chr3 191924339 191924588 + 1.16667 NA Intergenic L1M4|LINE|L1 -314167 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 522-3 chr15 89017303 89018035 + 1.16667 NA Intergenic Intergenic -70787 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 262.501-5 chr22 37897471 37897871 + 1.16667 NA Intergenic (TTTTTA)n|Simple_repeat|Simple_repeat -8626 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 337.001 chr17 21288149 21288588 + 1.16667 NA intron (NM_002756, intron 1 of 11) intron (NM_002756, intron 1 of 11) 332 NM_002756 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 285.334-9 chr9 108644111 108644463 + 1.16667 NA Intergenic L2c|LINE|L2 211699 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 180.5-17 chr15 77662665 77662913 + 1.16667 NA intron (NR_120361, intron 1 of 2) intron (NR_120361, intron 1 of 2) 2738 NR_120361 101929478 Hs.569510 NR_120361 ENSG00000259281 LINGO1-AS2 - LINGO1 antisense RNA 2 ncRNA 769.834 chr6 77457531 77458711 + 1.16667 NA Intergenic Intergenic 5901 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 259.833-20 chr9 111422871 111423223 + 1.16667 NA intron (NM_001363756, intron 12 of 48) intron (NM_001363756, intron 12 of 48) 60515 NM_001364931 23392 Hs.368255 NM_001080398 ENSG00000136813 ECPAS ECM29|KIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 245.334-6 chr2 22110409 22110779 + 1.16667 NA Intergenic Intergenic -399942 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 213.667-5 chr12 60494520 60494852 + 1.16667 NA Intergenic MLT1C|LTR|ERVL-MaLR 805316 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 397.833 chr11 67262766 67263469 + 1.16667 NA Intergenic L2b|LINE|L2 -3356 NM_001619 156 Hs.83636 NM_001619 ENSG00000173020 GRK2 ADRBK1|BARK1|BETA-ARK1 G protein-coupled receptor kinase 2 protein-coding 210.5-15 chr14 77544581 77544845 + 1.16667 NA intron (NM_004863, intron 9 of 11) MER31B|LTR|ERV1 -45897 NM_199296 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 347.5-6 chr18 62183443 62183885 + 1.16667 NA intron (NM_176787, intron 1 of 30) L2b|LINE|L2 3392 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 243.667-11 chr14 42750379 42750932 + 1.16667 NA Intergenic Intergenic 1143799 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 193.833-11 chr15 62218499 62218806 + 1.16667 NA Intergenic MER50|LTR|ERV1 -15334 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 314.167-7 chr14 76014173 76014571 + 1.16667 NA intron (NM_001102564, intron 2 of 8) intron (NM_001102564, intron 2 of 8) 28609 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 302.834-3 chr2 50806034 50806356 + 1.16667 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -109933 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 227.334-18 chr8 104911164 104911569 + 1.16667 NA Intergenic L1PA8A|LINE|L1 -322342 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 190.5-44 chr6 112086586 112086805 + 1.16667 NA promoter-TSS (NM_001033564) promoter-TSS (NM_001033564) 787 NM_016262 51175 Hs.34851 NM_016262 ENSG00000074935 TUBE1 TUBE|dJ142L7.2 tubulin epsilon 1 protein-coding 248-27 chr4 30278994 30279333 + 1.16667 NA Intergenic Intergenic -441206 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 292.167-6 chr12 115975876 115976140 + 1.16667 NA intron (NM_015335, intron 23 of 30) L1ME3A|LINE|L1 172646 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 233.834-3 chr12 20946697 20946911 + 1.16667 NA intron (NM_001371097, intron 13 of 15) HUERS-P3-int|LTR|ERV1 -68892 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 308.501 chr1 100302558 100302833 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL 21454 NR_030279 693138 NR_030279 ENSG00000207750 MIR553 MIRN553|hsa-mir-553 microRNA 553 ncRNA 274.5-8 chr14 80775300 80775618 + 1.16667 NA intron (NM_152446, intron 16 of 24) intron (NM_152446, intron 16 of 24) 166279 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 296.834-7 chr22 49318027 49318508 + 1.16667 NA Intergenic L1MB8|LINE|L1 225199 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 283.834-5 chr5 87412698 87413298 + 1.16667 NA promoter-TSS (NM_001364076) promoter-TSS (NM_001364076) 35 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 238.834-4 chr14 59480843 59481225 + 1.16667 NA intron (NM_144581, intron 1 of 4) intron (NM_144581, intron 1 of 4) 2541 NM_001331159 112849 Hs.729061 NM_144581 ENSG00000126790 L3HYPDH C14orf149 trans-L-3-hydroxyproline dehydratase protein-coding 316.834 chr10 97731966 97732455 + 1.16667 NA Intergenic Intergenic -4911 NM_001174121 118813 Hs.744075 NM_144588 ENSG00000155256 ZFYVE27 PROTRUDIN|SPG33 zinc finger FYVE-type containing 27 protein-coding 204.834-13 chr8 85322561 85322769 + 1.16667 NA Intergenic L1M5|LINE|L1 19049 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 171.5-36 chr4 57585230 57585676 + 1.16667 NA Intergenic MSTB2-int|LTR|ERVL-MaLR 159581 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 237.834 chr1 78620455 78620677 + 1.16667 NA 5' UTR (NM_006820, exon 1 of 9) 5' UTR (NM_006820, exon 1 of 9) 118 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 292.5-10 chr19 27654774 27655223 + 1.16667 NA Intergenic HSAT4|Satellite|centr -138433 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 219.834-2 chr1 40593480 40593860 + 1.16667 NA Intergenic Intergenic 62033 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 282-22 chr5 38465443 38466005 + 1.16667 NA TTS (NM_001205301) TTS (NM_001205301) 20178 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 256-27 chr7 29812249 29812654 + 1.16667 NA intron (NM_001080529, intron 1 of 8) MLT1J|LTR|ERVL-MaLR 5897 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 211.5-51 chrX 68434543 68434771 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -1162 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 382.5-10 chr8 66893134 66893713 + 1.16667 NA intron (NM_001136160, intron 10 of 13) THE1B|LTR|ERVL-MaLR 21921 NM_001136160 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 299.667-14 chrX 56219284 56219715 + 1.16667 NA intron (NM_001324104, intron 2 of 6) intron (NM_001324104, intron 2 of 6) -12857 NM_001159296 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 286.5-8 chr2 169766960 169767492 + 1.16667 NA Intergenic Intergenic -31645 NM_003142 6741 Hs.632535 NM_003142 ENSG00000138385 SSB LARP3|La|La/SSB small RNA binding exonuclease protection factor La protein-coding 373.334-6 chr14 82980197 82980812 + 1.16667 NA Intergenic L1MC2|LINE|L1 337872 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 185.667-21 chr15 72046633 72046831 + 1.16667 NA intron (NM_006901, intron 1 of 41) intron (NM_006901, intron 1 of 41) -67526 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 183.834-3 chr7 88532421 88532690 + 1.16667 NA Intergenic Intergenic -225661 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 230.834-3 chr2 37401513 37402151 + 1.16667 NA Intergenic Intergenic 57202 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 194.167-4 chr1 199623369 199623747 + 1.16667 NA Intergenic Intergenic -404152 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 163.167-22 chr2 13199202 13199492 + 1.16667 NA Intergenic Intergenic -192334 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 294.5-18 chr22 39322698 39323044 + 1.16667 NA Intergenic LTR32|LTR|ERVL -3248 NM_001033853 6122 Hs.119598 NM_000967 ENSG00000100316 RPL3 ASC-1|L3|TARBP-B ribosomal protein L3 protein-coding 382.333-3 chr8 11458606 11459236 + 1.16667 NA intron (NM_053279, intron 1 of 2) intron (NM_053279, intron 1 of 2) 7832 NM_053279 83648 Hs.124299 NM_053279 ENSG00000154319 FAM167A C8orf13|D8S265|DIORA-1 family with sequence similarity 167 member A protein-coding 257.667-2 chr12 13216893 13217255 + 1.16667 NA 3' UTR (NM_001423, exon 5 of 5) 3' UTR (NM_001423, exon 5 of 5) 20348 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 403.667-2 chr14 64249662 64250199 + 1.16667 NA intron (NR_073496, intron 5 of 7) intron (NR_073496, intron 5 of 7) 33145 NM_001271877 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 201.834-4 chr15 56650018 56650225 + 1.16667 NA intron (NM_001002843, intron 18 of 20) L2c|LINE|L2 83965 NM_001002843 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 184.833-12 chr15 59725456 59725759 + 1.16667 NA Intergenic Intergenic -36287 NM_001368057 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 314.334-8 chr7 99919393 99919871 + 1.16667 NA promoter-TSS (NM_033017) promoter-TSS (NM_033017) -102 NM_033017 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 259.501-3 chr19 41226777 41227178 + 1.16667 NA intron (NM_001278599, intron 1 of 16) AluJb|SINE|Alu 222 NM_001278599 558 Hs.590970 NM_001699 ENSG00000167601 AXL ARK|JTK11|Tyro7|UFO AXL receptor tyrosine kinase protein-coding 189.667-46 chr6 84555038 84555235 + 1.16667 NA Intergenic L2b|LINE|L2 -80207 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 301.834-5 chr14 65395621 65395950 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -14807 NM_178155 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 242.5-10 chr10 129972112 129972494 + 1.16667 NA Intergenic CpG-3521 -8029 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 266.833-22 chr8 86043479 86043881 + 1.16667 NA Intergenic Intergenic 25988 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 364-3 chr11 81318489 81319258 + 1.16667 NA Intergenic Intergenic -556070 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 186-19 chr18 64718825 64719106 + 1.16667 NA Intergenic Intergenic -458910 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 221.167-3 chr1 151176183 151176374 + 1.16667 NA promoter-TSS (NM_013353) promoter-TSS (NM_013353) -297 NM_013353 29765 Hs.709681 NM_013353 ENSG00000163157 TMOD4 SK-TMOD tropomodulin 4 protein-coding 187-30 chr4 26751454 26751737 + 1.16667 NA intron (NM_001292054, intron 16 of 17) intron (NM_001292054, intron 16 of 17) 108649 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 336.834-7 chr6 157111811 157112287 + 1.16667 NA intron (NM_020732, intron 7 of 19) AluJb|SINE|Alu 75622 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 268-19 chr17 49033675 49033922 + 1.16667 NA intron (NM_001160423, intron 5 of 12) intron (NM_001160423, intron 5 of 12) 36413 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 261.667-24 chr7 42305196 42305570 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -68174 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 194.834-4 chr11 21578570 21579072 + 1.16667 NA Intergenic Intergenic -614264 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 456.667-5 chr4 76005564 76006140 + 1.16667 NA TTS (NR_125906) TTS (NR_125906) 1657 NM_002416 4283 Hs.77367 NM_002416 ENSG00000138755 CXCL9 CMK|Humig|MIG|SCYB9|crg-10 C-X-C motif chemokine ligand 9 protein-coding 225.167-4 chr10 84765821 84766203 + 1.16667 NA Intergenic L2a|LINE|L2 340843 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 177.334-5 chr17 49790728 49791107 + 1.16667 NA intron (NM_007067, intron 1 of 14) intron (NM_007067, intron 1 of 14) 2236 NM_001199158 11143 Hs.21907 NM_007067 ENSG00000136504 KAT7 HBO1|HBOA|MYST2|ZC2HC7 lysine acetyltransferase 7 protein-coding 228.5-25 chr4 107053594 107053911 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR -17439 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 280.334 chr10 30784022 30784446 + 1.16667 NA Intergenic Intergenic 61015 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 208.667-32 chr3 28315703 28315998 + 1.16667 NA intron (NM_001331186, intron 3 of 4) Tigger3a|DNA|TcMar-Tigger -32871 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 230.5-10 chr16 82805437 82805854 + 1.16667 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 32326 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 303.333-23 chr8 104189274 104189900 + 1.16667 NA intron (NM_001348498, intron 20 of 24) (AT)n|Simple_repeat|Simple_repeat -33748 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 191.333-17 chr18 37798775 37799063 + 1.16667 NA Intergenic Intergenic 141784 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 226-5 chr1 182120606 182120898 + 1.16667 NA Intergenic Intergenic -59040 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 249.833-2 chr10 103689614 103690071 + 1.16667 NA intron (NM_014631, intron 6 of 13) intron (NM_014631, intron 6 of 13) -11627 NM_001365079 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 215.5-20 chr6 3750117 3750350 + 1.16667 NA intron (NM_183373, intron 1 of 4) intron (NM_183373, intron 1 of 4) 1779 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 237.167-27 chr8 123240223 123240563 + 1.16667 NA intron (NM_001204180, intron 2 of 5) intron (NM_001204180, intron 2 of 5) 984 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 265.5-6 chr12 8157875 8158345 + 1.16667 NA Intergenic LTR56|LTR|ERV1 -14444 NM_001004328 440077 Hs.438536 NM_001004328 ENSG00000196946 ZNF705A - zinc finger protein 705A protein-coding 248.167-22 chr6 82040796 82041024 + 1.16667 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) 60855 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 400.167-7 chr7 143305488 143306015 + 1.16667 NA 3' UTR (NM_001224, exon 12 of 12) 3' UTR (NM_001224, exon 12 of 12) -10360 NM_000083 1180 Hs.121483 NM_000083 ENSG00000188037 CLCN1 CLC1 chloride voltage-gated channel 1 protein-coding 212.667-30 chr22 38829351 38829703 + 1.16667 NA intron (NM_014293, intron 1 of 4) intron (NM_014293, intron 1 of 4) 14501 NM_014293 23467 Hs.91622 NM_014293 ENSG00000221890 NPTXR NPR neuronal pentraxin receptor protein-coding 170.833-17 chr2 17484969 17485209 + 1.16667 NA Intergenic Intergenic 33351 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 306.334-12 chr7 36794465 36794953 + 1.16667 NA Intergenic Intergenic -70160 NM_001177506 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 222.167-38 chr8 28015408 28015631 + 1.16667 NA Intergenic L1MC4|LINE|L1 -22846 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 424.834-2 chr12 48900652 48901291 + 1.16667 NA Intergenic AluSx1|SINE|Alu -3162 NM_033124 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 176.667-20 chr17 59334111 59334492 + 1.16667 NA intron (NM_001005404, intron 1 of 4) intron (NM_001005404, intron 1 of 4) 2646 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 255-40 chr9 91056976 91057378 + 1.16667 NA Intergenic L1ME3Cz|LINE|L1 17955 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 296-9 chr20 7334619 7335002 + 1.16667 NA Intergenic Intergenic -12623 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 286.001-2 chr12 124041145 124041393 + 1.16667 NA intron (NM_001347902, intron 2 of 4) AluSx1|SINE|Alu 68054 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 222.834-5 chr20 49171615 49171913 + 1.16667 NA intron (NM_001322930, intron 1 of 12) intron (NM_001322930, intron 1 of 12) 16606 NM_017452 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 774.667 chr17 75033927 75035207 + 1.16667 NA intron (NR_110835, intron 2 of 7) intron (NR_110835, intron 2 of 7) 2000 NR_110835 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 605.334 chr7 93861079 93861740 + 1.16667 NA Intergenic L1MDa|LINE|L1 29344 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 192.833-13 chr19 5690318 5690708 + 1.16667 NA exon (NM_033643, exon 2 of 4) exon (NM_033643, exon 2 of 4) 218 NM_033643 25873 Hs.408018 NM_015414 ENSG00000130255 RPL36 L36 ribosomal protein L36 protein-coding 183-43 chr7 48983766 48984154 + 1.16667 NA Intergenic L1MEc|LINE|L1 59413 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 187.334-6 chr2 203225638 203226161 + 1.16667 NA Intergenic AluJo|SINE|Alu -12542 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 254.334-8 chr8 14860121 14860373 + 1.16667 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -6737 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 382.834 chr17 67194469 67194836 + 1.16667 NA intron (NM_001330447, intron 8 of 32) intron (NM_001330447, intron 8 of 32) -50124 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 173-18 chr15 63464777 63464970 + 1.16667 NA Intergenic Intergenic -39638 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 337.167 chr10 7661577 7662062 + 1.16667 NA intron (NM_001001851, intron 1 of 11) AluJb|SINE|Alu 5147 NM_030569 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 255-10 chr11 64146224 64146678 + 1.16667 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) 19662 NM_014067 28992 Hs.602898 NM_014067 ENSG00000133315 MACROD1 LRP16 mono-ADP ribosylhydrolase 1 protein-coding 205.167-3 chr12 5584318 5584612 + 1.16667 NA intron (NM_001278596, intron 21 of 25) intron (NM_001278596, intron 21 of 25) 90333 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 265-23 chr6 14859336 14859646 + 1.16667 NA Intergenic Intergenic -386578 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 165-34 chr21 24591911 24592175 + 1.16667 NA Intergenic AluJb|SINE|Alu 163303 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 179.167 chr1 27300311 27300479 + 1.16667 NA intron (NM_001276252, intron 12 of 15) intron (NM_001276252, intron 12 of 15) -21750 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 327.167-9 chr7 3594929 3595366 + 1.16667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 293895 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 235.167-15 chr17 63460808 63461068 + 1.16667 NA Intergenic Intergenic -14632 NM_001915 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 251.501-3 chr4 147831392 147831653 + 1.16667 NA intron (NM_024605, intron 3 of 22) intron (NM_024605, intron 3 of 22) 48927 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 272.167-23 chr9 38630863 38631124 + 1.16667 NA Intergenic AluJb|SINE|Alu 9905 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 207.167-2 chr1 180130304 180130772 + 1.16667 NA Intergenic L2a|LINE|L2 -24295 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 365.667-8 chr3 73324711 73325206 + 1.16667 NA Intergenic Intergenic 109037 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 188.834-3 chr12 38014489 38014707 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -302176 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 288.001 chr12 15526166 15526459 + 1.16667 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -20299 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 269-27 chr6 135231746 135232428 + 1.16667 NA Intergenic AluSz6|SINE|Alu -7073 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 269.334-10 chr8 114658434 114658933 + 1.16667 NA Intergenic Intergenic 1009330 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 180.834-5 chr5 95385430 95385620 + 1.16667 NA Intergenic L1MA5|LINE|L1 -5841 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 237.5-28 chr21 29949714 29950139 + 1.16667 NA Intergenic AluJr|SINE|Alu -9874 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 249.167-13 chr2 191689551 191689903 + 1.16667 NA promoter-TSS (NR_131917) promoter-TSS (NR_131917) -454 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 238.667-20 chr5 94022259 94022554 + 1.16667 NA intron (NR_028080, intron 3 of 8) MER21-int|LTR|ERVL 89257 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 181.334-10 chr6 100174442 100174715 + 1.16667 NA Intergenic MamSINE1|SINE|tRNA-RTE -180340 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 206-24 chr2 239144020 239144291 + 1.16667 NA intron (NM_006037, intron 8 of 26) intron (NM_006037, intron 8 of 26) 51302 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 312.001-3 chr21 25039729 25040198 + 1.16667 NA intron (NR_046198, intron 3 of 3) intron (NR_046198, intron 3 of 3) 199413 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 359-11 chr4 31653156 31653688 + 1.16667 NA Intergenic Intergenic 146878 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 352.334-4 chr2 39770151 39770629 + 1.16667 NA intron (NR_135664, intron 2 of 11) intron (NR_135664, intron 2 of 11) 8868 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 191.833-14 chr2 70860701 70861031 + 1.16667 NA Intergenic Intergenic -25050 NM_015717 50489 Hs.199731 NM_015717 ENSG00000116031 CD207 CLEC4K CD207 molecule protein-coding 350-4 chr1 200622770 200623250 + 1.16667 NA Intergenic Intergenic -2259 NM_014875 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 388.001 chr1 10342384 10342768 + 1.16667 NA intron (NM_001365951, intron 33 of 48) intron (NM_001365951, intron 33 of 48) 43610 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 395.667-7 chr5 67869220 67869695 + 1.16667 NA Intergenic L1ME2|LINE|L1 76244 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 252.667-18 chr5 118008781 118009140 + 1.16667 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -273614 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 237.334-8 chr16 35418124 35418584 + 1.16667 NA Intergenic L1PA8|LINE|L1 54823 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 369.168 chr1 196676278 196676667 + 1.16667 NA intron (NM_001014975, intron 4 of 9) intron (NM_001014975, intron 4 of 9) 24594 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 318.667-15 chr7 37192830 37193288 + 1.16667 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 160609 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 164.667-16 chr15 45454757 45455091 + 1.16667 NA Intergenic Intergenic 21874 NR_030599 100126311 NR_030599 ENSG00000284386 MIR147B MIRN147B|mir-147b microRNA 147b ncRNA 253.167-11 chr18 2713523 2713991 + 1.16667 NA intron (NM_015295, intron 17 of 47) L1M2|LINE|L1 57870 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 180.834-3 chr3 6935348 6935573 + 1.16667 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -41443 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 310.334-2 chr11 71408352 71408739 + 1.16667 NA intron (NR_038862, intron 2 of 2) AluSx|SINE|Alu 14809 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 242.834-5 chr12 26635145 26635394 + 1.16667 NA intron (NM_002223, intron 21 of 56) intron (NM_002223, intron 21 of 56) 197925 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 172.334-6 chr4 134177679 134178058 + 1.16667 NA Intergenic L1PA15|LINE|L1 23921 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 293.334-7 chr20 44720825 44721248 + 1.16667 NA intron (NM_001323369, intron 2 of 2) intron (NM_001323369, intron 2 of 2) 6192 NM_003881 8839 Hs.592145 NM_003881 ENSG00000064205 CCN5 CT58|CTGF-L|WISP2 cellular communication network factor 5 protein-coding 321.167-3 chr11 86672804 86673268 + 1.16667 NA promoter-TSS (NR_147831) promoter-TSS (NR_147831) -400 NR_147828 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 224.667-20 chr18 69018599 69018814 + 1.16667 NA intron (NM_001093729, intron 9 of 9) L1MA9|LINE|L1 220626 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 227.667-36 chr6 63573434 63573717 + 1.16667 NA intron (NM_003463, intron 1 of 5) CpG 1563 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 166.667-6 chr10 78058140 78058525 + 1.16667 NA Intergenic AluJo|SINE|Alu 24469 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 196.667-31 chr2 226114862 226115239 + 1.16667 NA Intergenic Intergenic -27744 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 268.334-10 chr8 11467542 11467949 + 1.16667 NA promoter-TSS (NM_053279) promoter-TSS (NM_053279) -992 NM_053279 83648 Hs.124299 NM_053279 ENSG00000154319 FAM167A C8orf13|D8S265|DIORA-1 family with sequence similarity 167 member A protein-coding 299.334 chr1 9917275 9917646 + 1.16667 NA Intergenic AluSx1|SINE|Alu -7191 NM_020248 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 181.334-4 chr17 21284473 21284630 + 1.16667 NA promoter-TSS (NM_145109) promoter-TSS (NM_145109) -160 NM_145109 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 494.5 chr1 218376954 218377631 + 1.16667 NA intron (NR_138149, intron 2 of 7) intron (NR_138149, intron 2 of 7) -31614 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 355.667-7 chr2 22330969 22331412 + 1.16667 NA Intergenic Intergenic -205289 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 341.5-11 chr2 86209198 86209704 + 1.16667 NA intron (NM_016622, intron 3 of 3) intron (NM_016622, intron 3 of 3) 9994 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 198-33 chr4 132015118 132015445 + 1.16667 NA Intergenic Intergenic 250443 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 361.667-16 chr8 120092779 120093156 + 1.16667 NA Intergenic Intergenic -32135 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 217.667-3 chr1 156889342 156889647 + 1.16667 NA Intergenic L2a|LINE|L2 -4224 NM_001353683 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 279.834-7 chr2 75514123 75514513 + 1.16667 NA intron (NM_032181, intron 3 of 3) L2c|LINE|L2 -9750 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 178.5 chr1 13760890 13761105 + 1.16667 NA intron (NM_001135610, intron 6 of 7) intron (NM_001135610, intron 6 of 7) 11582 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 174.5-12 chr15 71559882 71560113 + 1.16667 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 12761 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 225.333-27 chr3 112960703 112961130 + 1.16667 NA intron (NM_138806, intron 1 of 7) intron (NM_138806, intron 1 of 7) 14187 NM_138806 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 319.5-16 chr6 61229056 61229743 + 1.16667 NA Intergenic L1MEg|LINE|L1 -344731 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 287.5-14 chr3 56493022 56493561 + 1.16667 NA Intergenic L1ME4b|LINE|L1 -24824 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 185.834-9 chr4 112987287 112987900 + 1.16667 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -61821 NM_001354241 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 296.667-13 chr2 198006060 198006455 + 1.16667 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 201664 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 202.5-36 chr3 37221496 37221790 + 1.16667 NA Intergenic Intergenic -21628 NM_002078 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 195.334 chr1 57883034 57883320 + 1.16667 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) 22596 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 197.333-30 chr5 35023297 35023669 + 1.16667 NA intron (NM_031900, intron 9 of 13) intron (NM_031900, intron 9 of 13) 24466 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 286-19 chr5 34517223 34517707 + 1.16667 NA Intergenic Intergenic -138863 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 238.334-18 chr6 142836421 142836910 + 1.16667 NA intron (NM_006734, intron 2 of 9) intron (NM_006734, intron 2 of 9) 108511 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 251.834-4 chr17 61409727 61410277 + 1.16667 NA TTS (NM_005994) TTS (NM_005994) -1749 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 163.167-8 chr11 44949861 44950298 + 1.16667 NA promoter-TSS (NM_001258320) promoter-TSS (NM_001258320) 81 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 225.5-24 chr6 79473731 79473956 + 1.16667 NA Intergenic L1M7|LINE|L1 63587 NM_001122769 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 lebercilin LCA5 protein-coding 199-8 chr10 91694438 91694719 + 1.16667 NA Intergenic Intergenic -61507 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 265.834 chr1 79472826 79473151 + 1.16667 NA Intergenic Intergenic -466258 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 206.667-3 chr1 190912195 190912536 + 1.16667 NA Intergenic THE1C-int|LTR|ERVL-MaLR 287475 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 283-22 chr7 112881214 112881551 + 1.16667 NA intron (NM_152556, intron 3 of 4) MER52A|LTR|ERV1 58493 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 249.5-14 chr4 35792933 35793304 + 1.16667 NA Intergenic Intergenic 450821 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 242.334-5 chr19 15738393 15738759 + 1.16667 NA Intergenic L1M5|LINE|L1 -2817 NM_013938 26532 Hs.553524 NM_013938 ENSG00000171936 OR10H3 - olfactory receptor family 10 subfamily H member 3 protein-coding 249-29 chr6 106360086 106360537 + 1.16667 NA promoter-TSS (NM_001371242) promoter-TSS (NM_001371242) -406 NM_001371242 252.167-18 chr4 66382720 66382978 + 1.16667 NA Intergenic Intergenic 106025 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 189.167-26 chr3 97761907 97762259 + 1.16667 NA TTS (NM_001080448) TTS (NM_001080448) -2438 NM_177976 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 312.501 chr10 62271800 62272168 + 1.16667 NA Intergenic L1ME3F|LINE|L1 -3140 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 173.167-9 chr11 11010711 11010948 + 1.16667 NA Intergenic Intergenic 152612 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 209.5-21 chr2 85471192 85471464 + 1.16667 NA Intergenic AluJr|SINE|Alu 52397 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 282-14 chr14 90900020 90900455 + 1.16667 NA exon (NM_001322234, exon 11 of 17) exon (NM_001322234, exon 11 of 17) -83807 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 330.833-9 chr2 48110221 48110697 + 1.16667 NA Intergenic Intergenic -204223 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 237.667-11 chr15 61624434 61624801 + 1.16667 NA Intergenic Intergenic -105301 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 196.334-3 chr12 13175338 13175791 + 1.16667 NA Intergenic Intergenic -21162 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 233.167-7 chr12 14809883 14810195 + 1.16667 NA intron (NM_001013698, intron 1 of 1) intron (NM_001013698, intron 1 of 1) 4143 NM_001013698 440087 Hs.220931 NM_001013698 ENSG00000179256 SMCO3 C12orf69 single-pass membrane protein with coiled-coil domains 3 protein-coding 194-34 chr4 103112008 103112315 + 1.16667 NA intron (NM_001813, intron 46 of 48) intron (NM_001813, intron 46 of 48) -12327 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 360-16 chr6 71704320 71704844 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -182121 NM_001350411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 210.334-9 chr4 100454853 100455270 + 1.16667 NA intron (NM_016242, intron 4 of 11) L1MEf|LINE|L1 -59814 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 240-25 chr17 50851854 50852291 + 1.16667 NA Intergenic Intergenic 14282 NM_005749 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 191.5-20 chr15 73644745 73644991 + 1.16667 NA Intergenic AluJb|SINE|Alu -11479 NM_001161364 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 390.334-3 chr21 16383206 16383549 + 1.16667 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -35826 NR_136546 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 230.167-2 chr1 75070120 75070472 + 1.16667 NA Intergenic L1MA6|LINE|L1 -58138 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 223-9 chr12 18430587 18430877 + 1.16667 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 169192 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 251.5-15 chr20 51318270 51318625 + 1.16667 NA Intergenic MLT1G3|LTR|ERVL-MaLR 134530 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 180.667-14 chr12 17575848 17576154 + 1.16667 NA Intergenic Intergenic 13077 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 452-5 chr9 22446625 22447226 + 1.16667 NA 5' UTR (NM_022160, exon 1 of 2) 5' UTR (NM_022160, exon 1 of 2) 101 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 247.5-2 chr11 13668309 13668689 + 1.16667 NA promoter-TSS (NM_032228) promoter-TSS (NM_032228) -169 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 225.5-30 chr8 116967995 116968330 + 1.16667 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 17187 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 218-23 chr2 143520225 143520504 + 1.16667 NA intron (NM_018460, intron 10 of 13) intron (NM_018460, intron 10 of 13) 390945 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 494.334-2 chr2 155310350 155311229 + 1.16667 NA Intergenic Intergenic 612094 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 256.834-2 chr17 39635284 39635533 + 1.16667 NA intron (NM_032192, intron 5 of 6) intron (NM_032192, intron 5 of 6) -1672 NM_001165937 10948 Hs.728838 NM_006804 ENSG00000131748 STARD3 CAB1|MLN64|es64 StAR related lipid transfer domain containing 3 protein-coding 224.167-31 chr9 36429842 36430146 + 1.16667 NA Intergenic HAL1|LINE|L1 -28796 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 231.5-14 chr16 25248454 25248747 + 1.16667 NA intron (NM_001012981, intron 4 of 6) L1MA7|LINE|L1 9245 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 168.834-2 chr8 57579201 57579535 + 1.16667 NA Intergenic Intergenic -166781 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 197.667-33 chr2 209606288 209606507 + 1.16667 NA intron (NM_001039538, intron 3 of 14) AluJb|SINE|Alu 26718 NM_001363911 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 426.501 chr18 65049193 65049580 + 1.16667 NA Intergenic Intergenic -700866 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 195.834-7 chr5 92477403 92477695 + 1.16667 NA Intergenic Intergenic 1093794 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 174.833-9 chr14 56494678 56494968 + 1.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR -19508 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 193.167-24 chr5 35202525 35202781 + 1.16667 NA intron (NM_000949, intron 1 of 9) L2c|LINE|L2 27834 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 272-28 chr8 79798937 79799313 + 1.16667 NA intron (NR_125410, intron 3 of 3) intron (NR_125410, intron 3 of 3) 30983 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 239.5-9 chr14 71021554 71021958 + 1.16667 NA intron (NM_014982, intron 12 of 35) L2|LINE|L2 114297 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 315.834-7 chr8 133016208 133016547 + 1.16667 NA intron (NM_003235, intron 37 of 47) MER20|DNA|hAT-Charlie 30204 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 342.001-4 chrX 154308490 154308903 + 1.16667 NA intron (NM_001145934, intron 1 of 11) intron (NM_001145934, intron 1 of 11) 3639 NM_001145934 8277 Hs.102866 NM_012253 ENSG00000007350 TKTL1 TKR|TKT2 transketolase like 1 protein-coding 233.834-4 chr14 41471040 41471266 + 1.16667 NA Intergenic Intergenic -135703 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 297.834-9 chr8 114559090 114559422 + 1.16667 NA Intergenic MER20|DNA|hAT-Charlie 1108757 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 297.667-21 chr5 131263825 131264126 + 1.16667 NA promoter-TSS (NM_020240) promoter-TSS (NM_020240) -34 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 247.834-3 chr20 45150551 45150872 + 1.16667 NA Intergenic Intergenic -24191 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 254-24 chr7 78561268 78561812 + 1.16667 NA intron (NM_001301128, intron 3 of 20) MADE1|DNA|TcMar-Mariner 214298 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 164.167-41 chr5 105652942 105653155 + 1.16667 NA Intergenic L1M2|LINE|L1 553574 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 195.834-5 chr18 77163063 77163349 + 1.16667 NA Intergenic L1MB7|LINE|L1 -30423 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 178.334 chr11 65766418 65766654 + 1.16667 NA Intergenic AluJo|SINE|Alu 14440 NM_138368 91056 Hs.591957 NM_138368 ENSG00000254470 AP5B1 AP-5|PP1030 adaptor related protein complex 5 subunit beta 1 protein-coding 266.667-5 chr12 49511513 49511792 + 1.16667 NA intron (NM_001293285, intron 10 of 14) intron (NM_001293285, intron 10 of 14) -27378 NM_001314030 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 350.334-6 chr17 59193321 59193748 + 1.16667 NA exon (NM_018304, exon 5 of 10) exon (NM_018304, exon 5 of 10) -16476 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 192.5-2 chr1 102965349 102965542 + 1.16667 NA intron (NM_001854, intron 38 of 66) intron (NM_001854, intron 38 of 66) 143051 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 167.167-28 chr5 121781273 121781435 + 1.16667 NA Intergenic Intergenic -70528 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 448.834-3 chr17 79844661 79845435 + 1.16667 NA Intergenic CpG -5608 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 238.001 chr1 181749367 181749628 + 1.16667 NA intron (NM_001205293, intron 25 of 47) MIRb|SINE|MIR 265980 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 214.667-12 chr19 41754532 41754751 + 1.16667 NA promoter-TSS (NM_002483) promoter-TSS (NM_002483) -889 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 197.834 chr1 22889395 22889653 + 1.16667 NA intron (NM_004442, intron 6 of 15) L2c|LINE|L2 -26298 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 194.667-20 chr14 51659370 51659616 + 1.16667 NA intron (NM_001267046, intron 1 of 13) intron (NM_001267046, intron 1 of 13) 7583 NM_152330 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 371.001 chr20 55025056 55025524 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -397753 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 266.834-5 chr6 38900036 38900409 + 1.16667 NA intron (NM_001371, intron 61 of 91) L1ME3A|LINE|L1 52885 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 182-32 chr3 157384341 157384657 + 1.16667 NA intron (NM_024621, intron 6 of 13) intron (NM_024621, intron 6 of 13) -52351 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 223-20 chr2 29211395 29211713 + 1.16667 NA intron (NM_004304, intron 24 of 28) L3|LINE|CR1 12346 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 412.834-5 chr3 24677704 24678325 + 1.16667 NA Intergenic Intergenic -151309 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 309.334-10 chr5 64206131 64206574 + 1.16667 NA intron (NM_001113561, intron 2 of 7) intron (NM_001113561, intron 2 of 7) 40509 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 274.5-21 chr4 87497062 87497377 + 1.16667 NA 5' UTR (NM_001291976, exon 3 of 12) 5' UTR (NM_001291976, exon 3 of 12) 32284 NM_001128310 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 168.667-15 chr14 42538947 42539134 + 1.16667 NA Intergenic Intergenic 932184 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 230.667-2 chr1 154386311 154386619 + 1.16667 NA Intergenic HAL1|LINE|L1 -18728 NM_001206866 3570 Hs.135087 NM_000565 ENSG00000160712 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 303.334 chr1 57252716 57253141 + 1.16667 NA intron (NM_001353980, intron 5 of 5) intron (NM_001353980, intron 5 of 5) 170184 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 210.334-8 chr4 31812324 31812592 + 1.16667 NA Intergenic Intergenic -184921 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 255.167-27 chr6 22076074 22076480 + 1.16667 NA intron (NR_015410, intron 8 of 11) intron (NR_015410, intron 8 of 11) 70916 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 203.167-17 chr20 24224888 24225067 + 1.16667 NA TTS (NR_040102) TTS (NR_040102) 25210 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 564.167-3 chr15 57146038 57147066 + 1.16667 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -72878 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 321.501-4 chr22 43380083 43380437 + 1.16667 NA Intergenic L1MEd|LINE|L1 -20071 NR_146918 105373054 NR_146918 ENSG00000236117 LINC01639 - long intergenic non-protein coding RNA 1639 ncRNA 295-5 chr11 57666426 57666921 + 1.16667 NA Intergenic Intergenic -1441 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 295.334-11 chr6 73657163 73657626 + 1.16667 NA Intergenic AluJo|SINE|Alu -3402 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 224.5-15 chr17 71158519 71158830 + 1.16667 NA intron (NR_104152, intron 2 of 3) MLT2B1|LTR|ERVL 43505 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 172-2 chr10 43405282 43405467 + 1.16667 NA intron (NM_001098204, intron 1 of 3) L1MC5a|LINE|L1 2477 NM_001098206 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 190.834-13 chr8 27490980 27491189 + 1.16667 NA promoter-TSS (NM_001256482) promoter-TSS (NM_001256482) -59 NM_001256483 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 244.334-10 chr7 36788594 36788901 + 1.16667 NA Intergenic AluJb|SINE|Alu -64198 NM_001177506 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 199-47 chr7 7729429 7729693 + 1.16667 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -10954 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 380.333-10 chrX 96068104 96068663 + 1.16667 NA Intergenic Intergenic 269519 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 253.334-8 chr14 82958537 82958962 + 1.16667 NA Intergenic L1ME1|LINE|L1 316117 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 189.334-8 chr2 196292467 196292644 + 1.16667 NA intron (NM_020760, intron 14 of 28) intron (NM_020760, intron 14 of 28) 32531 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 234.5-10 chr12 46134238 46134671 + 1.16667 NA Intergenic LTR80B|LTR|ERVL 132062 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 171.667-39 chr3 101852598 101852841 + 1.16667 NA intron (NM_001005474, intron 3 of 12) intron (NM_001005474, intron 3 of 12) 3205 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 251.5-25 chr7 87901187 87901522 + 1.16667 NA intron (NM_001318061, intron 10 of 11) intron (NM_001318061, intron 10 of 11) 24861 NM_001318060 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 199.667-22 chr2 188610059 188610254 + 1.16667 NA Intergenic MSTC|LTR|ERVL-MaLR 179967 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 324.834-4 chr3 151921318 151921696 + 1.16667 NA intron (NR_110203, intron 1 of 2) L1MCb|LINE|L1 6668 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 178.834-3 chr10 85364612 85364886 + 1.16667 NA Intergenic Intergenic 68023 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 459.5-3 chr18 895058 895609 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -9538 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 554-4 chr2 48469555 48470283 + 1.16667 NA intron (NR_024188, intron 9 of 21) MIR3|SINE|MIR 29150 NM_001193475 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 203.834-8 chr9 24885558 24885793 + 1.16667 NA Intergenic Intergenic -339778 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 195.001-2 chr9 68875731 68876102 + 1.16667 NA intron (NM_003558, intron 5 of 15) L1ME3C|LINE|L1 95851 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 203-6 chr10 102596177 102596450 + 1.16667 NA intron (NM_001178133, intron 6 of 10) intron (NM_001178133, intron 6 of 10) -48182 NR_144321 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 183.834-4 chr9 93152973 93153226 + 1.16667 NA Intergenic L1ME2|LINE|L1 -18848 NM_004148 4814 Hs.494457 NM_004148 ENSG00000131669 NINJ1 NIN1|NINJURIN ninjurin 1 protein-coding 232.501-3 chr6 11613763 11613970 + 1.16667 NA Intergenic MIRb|SINE|MIR 76117 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 189.334-7 chr2 162583968 162584218 + 1.16667 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -184843 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 406.834-3 chr8 119531786 119532228 + 1.16667 NA Intergenic MER94|DNA|hAT-Blackjack 61001 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 284.5-16 chr4 74157665 74158113 + 1.16667 NA promoter-TSS (NM_001351314) promoter-TSS (NM_001351314) -219 NM_001351329 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 230.334-7 chr5 64262827 64263214 + 1.16667 NA intron (NM_001113561, intron 5 of 7) MIRb|SINE|MIR 97177 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 317.5-4 chr10 63867437 63867829 + 1.16667 NA Intergenic Intergenic -345743 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 205.167-2 chr11 3841760 3842333 + 1.16667 NA Intergenic MIRb|SINE|MIR -1087 NM_001665 391 Hs.501728 NM_001665 ENSG00000177105 RHOG ARHG ras homolog family member G protein-coding 290.501-5 chrX 71288944 71289563 + 1.16667 NA intron (NM_001145408, intron 3 of 12) intron (NM_001145408, intron 3 of 12) 5618 NM_007363 4841 Hs.533282 NM_007363 ENSG00000147140 NONO MRXS34|NMT55|NRB54|P54|P54NRB|PPP1R114 non-POU domain containing octamer binding protein-coding 322.667-13 chr2 47159481 47159870 + 1.16667 NA TTS (NM_001305624) TTS (NM_001305624) -4367 NM_173649 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 352.667-4 chr17 45093024 45093586 + 1.16667 NA intron (NM_021079, intron 3 of 11) intron (NM_021079, intron 3 of 11) 21128 NR_106842 102465470 NR_106842 ENSG00000277249 MIR6784 hsa-mir-6784 microRNA 6784 ncRNA 289.5-3 chr12 123190996 123191488 + 1.16667 NA intron (NR_103517, intron 13 of 23) AluSp|SINE|Alu 41899 NM_022782 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 163.667-33 chr21 15716562 15716991 + 1.16667 NA Intergenic Intergenic -13158 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 208.667-37 chr6 37134251 37134432 + 1.16667 NA Intergenic Intergenic -35811 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 182-15 chr16 68186641 68186955 + 1.16667 NA intron (NM_004555, intron 8 of 10) intron (NM_004555, intron 8 of 10) 46701 NR_106831 102466194 NR_106831 ENSG00000284259 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 240.501-4 chr6 129349242 129349452 + 1.16667 NA exon (NM_001079823, exon 31 of 64) exon (NM_001079823, exon 31 of 64) 360830 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 189.167-6 chr11 42911407 42911713 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 357809 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 236.001 chr1 113932559 113932942 + 1.16667 NA intron (NM_001369807, intron 1 of 15) intron (NM_001369807, intron 1 of 15) 2906 NM_001369807 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 209.501 chr9 131969260 131969485 + 1.16667 NA intron (NM_001253881, intron 3 of 6) intron (NM_001253881, intron 3 of 6) 110495 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 225.501-2 chr5 148313820 148314030 + 1.16667 NA intron (NM_032566, intron 2 of 3) intron (NM_032566, intron 2 of 3) 1502 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 482-5 chr18 46280966 46281613 + 1.16667 NA Intergenic Intergenic -52729 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 192.167-28 chr5 26280943 26281168 + 1.16667 NA Intergenic Intergenic 757531 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 206.334-2 chr2 77861296 77861472 + 1.16667 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -54550 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 360-11 chr20 37385700 37386280 + 1.16667 NA intron (NM_198291, intron 4 of 13) intron (NM_198291, intron 4 of 13) 39862 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 190-57 chr9 29729744 29730066 + 1.16667 NA Intergenic Intergenic -516304 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 252.667-25 chr9 107950936 107951307 + 1.16667 NA Intergenic L1MEd|LINE|L1 -461352 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 251.667-35 chr8 87506781 87507027 + 1.16667 NA Intergenic Intergenic 367111 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 270.667-23 chr7 83411157 83411555 + 1.16667 NA intron (NM_001178129, intron 5 of 16) intron (NM_001178129, intron 5 of 16) 230075 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 291.5-11 chr14 50528641 50528999 + 1.16667 NA intron (NM_198794, intron 2 of 31) intron (NM_198794, intron 2 of 31) 3749 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 324.334-6 chr7 30820329 30820884 + 1.16667 NA intron (NR_037598, intron 7 of 19) L1MB5|LINE|L1 49189 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 217-13 chr2 66383154 66383439 + 1.16667 NA promoter-TSS (NR_130931) promoter-TSS (NR_130931) -10 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 239-21 chr22 29862992 29863393 + 1.16667 NA Intergenic L1MD2|LINE|L1 -19977 NM_153050 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 293.667-7 chr15 57837021 57837334 + 1.16667 NA Intergenic Intergenic 130463 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 244.5-18 chr2 134866414 134866668 + 1.16667 NA TTS (NR_036549) TTS (NR_036549) 8721 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 365.834 chr2 196453339 196453997 + 1.16667 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) -91491 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 277.667-23 chr4 35188696 35189045 + 1.16667 NA Intergenic Intergenic -919123 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 250.167-10 chr15 59043384 59043731 + 1.16667 NA intron (NM_001270529, intron 2 of 13) intron (NM_001270529, intron 2 of 13) 55411 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 175.834-8 chr4 110843319 110843488 + 1.16667 NA Intergenic Intergenic 17244 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 182.834-4 chr16 13957494 13957893 + 1.16667 NA Intergenic Intergenic 37536 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 273.667-4 chr11 14300870 14301295 + 1.16667 NA intron (NM_001177314, intron 1 of 5) intron (NM_001177314, intron 1 of 5) 57403 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 177.5-51 chrX 13571148 13571425 + 1.16667 NA intron (NM_015507, intron 1 of 11) intron (NM_015507, intron 1 of 11) 1685 NM_015507 25975 Hs.12844 NM_015507 ENSG00000198759 EGFL6 MAEG|W80 EGF like domain multiple 6 protein-coding 256.334-14 chr8 112686904 112687229 + 1.16667 NA intron (NM_001363185, intron 12 of 66) L1M5|LINE|L1 43573 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 243.334-3 chr10 128541168 128541390 + 1.16667 NA Intergenic CpG 255329 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 226-44 chr9 79046916 79047267 + 1.16667 NA Intergenic Intergenic 98575 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 334.667-11 chr3 23998575 23999364 + 1.16667 NA Intergenic Intergenic 52848 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 181.667-3 chr1 92608230 92608398 + 1.16667 NA intron (NM_001350198, intron 16 of 19) intron (NM_001350198, intron 16 of 19) -121389 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 326.167-5 chr15 69207691 69208074 + 1.16667 NA intron (NM_001324094, intron 2 of 5) L1MD3|LINE|L1 47247 NM_001324093 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 239.334-8 chr2 181138738 181139120 + 1.16667 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 15092 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 270.5-18 chr19 9362834 9363213 + 1.16667 NA promoter-TSS (NM_003451) promoter-TSS (NM_003451) 10 NM_003451 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 207.501 chr10 93813281 93813459 + 1.16667 NA Intergenic Intergenic 55434 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 220.834-7 chr6 133593987 133594369 + 1.16667 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -226969 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 215.5-17 chr5 102780396 102780713 + 1.16667 NA intron (NR_157231, intron 1 of 14) MER20B|DNA|hAT-Charlie 25249 NM_001364594 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 213.167-15 chr2 73431900 73432148 + 1.16667 NA intron (NM_015120, intron 6 of 22) intron (NM_015120, intron 6 of 22) -25079 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 164-24 chr17 57960064 57960284 + 1.16667 NA Intergenic Intergenic -4762 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 230.667-8 chr14 51239949 51240212 + 1.16667 NA promoter-TSS (NM_030755) promoter-TSS (NM_030755) -167 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 284.667-11 chr5 44248916 44249314 + 1.16667 NA Intergenic Intergenic -139617 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 168.667-41 chr5 155646727 155647222 + 1.16667 NA Intergenic MIR|SINE|MIR 633219 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 187.833-33 chr8 88289899 88290207 + 1.16667 NA intron (NM_005941, intron 1 of 9) Tigger17c|DNA|TcMar-Tigger 37430 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 248.667-3 chr1 237879151 237879434 + 1.16667 NA intron (NR_027247, intron 3 of 11) L1MA8|LINE|L1 11630 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 217.667-34 chr6 91524063 91524320 + 1.16667 NA Intergenic Intergenic 2531 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 259-9 chr10 61013563 61013819 + 1.16667 NA Intergenic Intergenic -2584 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 196.167-10 chr14 60067763 60068009 + 1.16667 NA Intergenic Intergenic -24025 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 302.501-4 chr5 150637303 150637661 + 1.16667 NA intron (NM_001166208, intron 2 of 2) intron (NM_001166208, intron 2 of 2) -3178 NM_001109974 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 174.834 chr10 51350442 51350662 + 1.16667 NA intron (NM_001098512, intron 2 of 17) L1MA2|LINE|L1 50979 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 334.167-10 chrX 7132598 7132960 + 1.16667 NA intron (NM_001135565, intron 1 of 4) intron (NM_001135565, intron 1 of 4) -14511 NM_001320750 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 167.167-16 chr15 26261105 26261321 + 1.16667 NA Intergenic Intergenic 145400 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 187-53 chrX 151614853 151615242 + 1.16667 NA intron (NM_173493, intron 4 of 15) intron (NM_173493, intron 4 of 15) 51372 NM_173493 139135 Hs.160594 NM_173493 ENSG00000166049 PASD1 CT63|CT64|OXTES1 PAS domain containing repressor 1 protein-coding 248.167-10 chr2 16974168 16974554 + 1.16667 NA Intergenic Intergenic -308527 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 209.333-20 chr2 72591070 72591483 + 1.16667 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 234757 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 348.167-4 chr14 66682341 66682816 + 1.16667 NA intron (NM_001024218, intron 2 of 21) AluSc8|SINE|Alu 175171 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 245.667-11 chr2 133844055 133844454 + 1.16667 NA Intergenic Intergenic -275681 NM_001371457 271.501-2 chr16 54135639 54135925 + 1.16667 NA Intergenic Intergenic 96389 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 494.168 chr9 35708548 35709132 + 1.16667 NA intron (NM_006289, intron 33 of 56) Charlie9|DNA|hAT-Charlie 1901 NR_106911 102465513 NR_106911 ENSG00000284195 MIR6852 hsa-mir-6852 microRNA 6852 ncRNA 188.501 chr16 73266167 73266341 + 1.16667 NA Intergenic Intergenic -120551 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 374.834-5 chr9 27852885 27853343 + 1.16667 NA Intergenic Intergenic -279248 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 251.834 chr10 117429652 117429935 + 1.16667 NA Intergenic Intergenic -54353 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 216.834-10 chr5 84163254 84163566 + 1.16667 NA intron (NM_001278642, intron 3 of 9) intron (NM_001278642, intron 3 of 9) 221457 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 263.834-8 chr7 1556172 1556527 + 1.16667 NA promoter-TSS (NM_001097620) promoter-TSS (NM_001097620) -144 NM_001097620 202915 Hs.592174 NM_152689 ENSG00000164855 TMEM184A SDMG1 transmembrane protein 184A protein-coding 221.334-5 chr14 42422845 42423041 + 1.16667 NA Intergenic Helitron1Nb_Mam|RC|Helitron 816087 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 168 chr1 8744739 8744936 + 1.16667 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 72803 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 255.167-21 chr20 21560466 21560847 + 1.16667 NA Intergenic Intergenic -9368 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 302.334-6 chr15 60381581 60381904 + 1.16667 NA intron (NM_001002857, intron 4 of 13) intron (NM_001002857, intron 4 of 13) 16244 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 166.5-2 chr1 241507137 241507625 + 1.16667 NA intron (NM_000143, intron 5 of 9) Tigger3a|DNA|TcMar-Tigger 12404 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 271.001-3 chr15 69523238 69523607 + 1.16667 NA Intergenic Intergenic -38298 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 201.667-9 chr12 127559274 127559579 + 1.16667 NA Intergenic L2a|LINE|L2 77041 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 225.334-8 chr8 29816969 29817232 + 1.16667 NA intron (NR_125817, intron 2 of 2) (CTCTCCT)n|Simple_repeat|Simple_repeat 11404 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 238.667-29 chrX 24216361 24216908 + 1.16667 NA TTS (NM_001178085) TTS (NM_001178085) 66905 NM_001178084 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein X-linked protein-coding 223.667-3 chr1 82885458 82885777 + 1.16667 NA Intergenic Intergenic -17566 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 172.167-9 chr15 62979385 62979616 + 1.16667 NA Intergenic Charlie13b|DNA|hAT-Charlie -63247 NM_001365777 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 289.333-16 chr20 59940614 59940986 + 1.16667 NA promoter-TSS (NM_006242) promoter-TSS (NM_006242) 411 NM_001190827 63939 Hs.54973 NM_022106 ENSG00000196227 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217 member B protein-coding 205.834-4 chr11 59186522 59186737 + 1.16667 NA intron (NM_015177, intron 2 of 8) MIR3|SINE|MIR 14497 NM_015177 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 329.5-19 chr6 161821080 161821602 + 1.16667 NA intron (NM_004562, intron 6 of 11) L1MC5a|LINE|L1 350364 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 224.334-9 chr6 51467902 51468163 + 1.16667 NA Intergenic Intergenic -153838 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 241-30 chr7 32273988 32274284 + 1.16667 NA intron (NM_001322059, intron 1 of 17) Charlie15b|DNA|hAT-Charlie 25192 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 243.5-25 chr4 116736841 116737209 + 1.16667 NA Intergenic Intergenic 348551 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 163.167-40 chr7 7623244 7623566 + 1.16667 NA Intergenic Intergenic -17347 NM_001302349 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 261.334-6 chr2 26575458 26575807 + 1.16667 NA intron (NM_001322426, intron 2 of 4) intron (NM_001322426, intron 2 of 4) 13045 NM_001105519 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 178.333-28 chr5 68246928 68247249 + 1.16667 NA intron (NM_181523, intron 2 of 15) intron (NM_181523, intron 2 of 15) 31332 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 206.333-9 chr12 39138685 39138991 + 1.16667 NA Intergenic L1M4b|LINE|L1 -233247 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 188.167-31 chr6 4779399 4779617 + 1.16667 NA intron (NM_001368127, intron 1 of 5) L2b|LINE|L2 3104 NM_001368127 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 199.833-28 chr7 19100557 19100874 + 1.16667 NA Intergenic MIRc|SINE|MIR 16921 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 248.167-7 chr15 38172703 38173019 + 1.16667 NA Intergenic MLT2A2|LTR|ERVL -79975 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 273.167-16 chr8 16120362 16120605 + 1.16667 NA exon (NM_001363744, exon 9 of 10) exon (NM_001363744, exon 9 of 10) 65789 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 221-7 chr12 13429969 13430327 + 1.16667 NA Intergenic L2c|LINE|L2 -53403 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 255.5-33 chr7 68320954 68321332 + 1.16667 NA Intergenic MIRb|SINE|MIR 300890 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 200-39 chr7 28666475 28666757 + 1.16667 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -19517 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 343.001-2 chr6 4012820 4013213 + 1.16667 NA Intergenic L1M3|LINE|L1 -8284 NR_146785 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 245.334-3 chr10 70724865 70725233 + 1.16667 NA intron (NM_080722, intron 4 of 21) L1MEd|LINE|L1 52543 NM_139155 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 241.167-2 chr10 99012633 99012897 + 1.16667 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -88197 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 227.333-8 chr11 121964489 121964882 + 1.16667 NA Intergenic Intergenic 135159 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 290.001 chr1 26999974 27000384 + 1.16667 NA 3' UTR (NM_001013642, exon 2 of 2) 3' UTR (NM_001013642, exon 2 of 2) 6487 NM_001013642 388610 Hs.355747 NM_001013642 ENSG00000253368 TRNP1 C1orf225|TNRP|TRNP TMF1 regulated nuclear protein 1 protein-coding 214.833-23 chr8 127534803 127535124 + 1.16667 NA Intergenic Intergenic -52824 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 289.667 chr1 14576837 14577218 + 1.16667 NA Intergenic Intergenic -21658 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 268.167-16 chr3 177185822 177186168 + 1.16667 NA intron (NM_001321194, intron 1 of 16) AluJr4|SINE|Alu 10483 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 335.167-5 chr2 677142 677530 + 1.16667 NA promoter-TSS (NM_001352681) promoter-TSS (NM_001352681) 70 NM_001352680 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 203.167-6 chr14 85524388 85524774 + 1.16667 NA Intergenic Intergenic -5444 NR_144387 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 194.167-20 chr2 219273990 219274184 + 1.16667 NA Intergenic Intergenic -5279 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 348.667-11 chr5 157811876 157812434 + 1.16667 NA intron (NM_014666, intron 5 of 11) intron (NM_014666, intron 5 of 11) 46990 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 200.334-3 chr17 77721394 77721659 + 1.16667 NA Intergenic L2a|LINE|L2 7033 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 194.5-44 chr6 135067517 135067862 + 1.16667 NA Intergenic MLT1G1|LTR|ERVL-MaLR -12867 NM_006620 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 216.667-26 chr2 46008048 46008303 + 1.16667 NA intron (NM_005400, intron 9 of 14) intron (NM_005400, intron 9 of 14) -289232 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 237-26 chr3 109901430 109901825 + 1.16667 NA Intergenic MER34C2|LTR|ERV1 298799 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 236.333-4 chr10 97463814 97464188 + 1.16667 NA exon (NM_001289404, exon 18 of 30) exon (NM_001289404, exon 18 of 30) 17826 NM_198046 84287 Hs.76662 NM_032327 ENSG00000171307 ZDHHC16 APH2|DHHC-16 zinc finger DHHC-type containing 16 protein-coding 189.334-6 chr2 115159698 115159925 + 1.16667 NA intron (NR_036580, intron 1 of 2) intron (NR_036580, intron 1 of 2) 1532 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 394.001-4 chr17 40609790 40610240 + 1.16667 NA Intergenic Intergenic 37803 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 361.167-2 chr10 20042879 20043391 + 1.16667 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 226703 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 250.834-3 chr10 25491971 25492250 + 1.16667 NA intron (NM_020752, intron 5 of 10) MSTB1|LTR|ERVL-MaLR -159602 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 186.167-17 chr4 43826871 43827125 + 1.16667 NA Intergenic L1MC1|LINE|L1 -189863 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 290-10 chr20 43593115 43593510 + 1.16667 NA intron (NM_001323578, intron 1 of 13) L1M5|LINE|L1 2375 NM_001323579 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 179.167-21 chr6 14976851 14977152 + 1.16667 NA Intergenic MIRb|SINE|MIR -269068 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 402.667-3 chr10 60420828 60421379 + 1.16667 NA intron (NM_001204403, intron 2 of 43) L1MB4|LINE|L1 -31228 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 396.001-3 chr8 138410514 138410882 + 1.16667 NA intron (NM_001362965, intron 1 of 19) L1P1|LINE|L1 86563 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 354.834-2 chr2 135471539 135472097 + 1.16667 NA intron (NM_001286569, intron 2 of 21) intron (NM_001286569, intron 2 of 21) 58767 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 396.5-2 chr12 32302467 32303017 + 1.16667 NA intron (NR_148725, intron 3 of 9) intron (NR_148725, intron 3 of 9) -96816 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 202.833-22 chr5 36642748 36643082 + 1.16667 NA intron (NM_004172, intron 3 of 9) L1MB8|LINE|L1 36309 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 172.167-15 chr21 15522988 15523190 + 1.16667 NA Intergenic Intergenic -206845 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 171.667-38 chr3 76268899 76269140 + 1.16667 NA Intergenic Intergenic -483470 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 336.667-8 chr2 58936000 58936326 + 1.16667 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -281545 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 225.667-14 chr17 30077419 30077687 + 1.16667 NA intron (NM_198529, intron 14 of 22) L1ME3F|LINE|L1 -39254 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 220.5-18 chr17 52074987 52075316 + 1.16667 NA intron (NM_001082533, intron 2 of 9) MER20B|DNA|hAT-Charlie 83563 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 303-20 chr8 86139521 86140150 + 1.16667 NA intron (NM_152565, intron 3 of 7) MIR3|SINE|MIR 40925 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 190.5-3 chr1 170492596 170492787 + 1.16667 NA intron (NR_125958, intron 1 of 2) L1MEg|LINE|L1 -39431 NM_001146039 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 297.334-4 chr12 39466008 39466331 + 1.16667 NA Intergenic L1MC2|LINE|L1 -23049 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 198.167-11 chr13 39263113 39263555 + 1.16667 NA Intergenic Intergenic 224878 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 517.334 chr16 9647866 9648606 + 1.16667 NA Intergenic Intergenic -192731 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 373.501-2 chr22 25663577 25664053 + 1.16667 NA intron (NM_001362778, intron 4 of 19) intron (NM_001362778, intron 4 of 19) -78373 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 184-34 chr3 10214797 10215235 + 1.16667 NA intron (NM_001570, intron 6 of 12) AluJb|SINE|Alu -33443 NM_014760 9797 Hs.475401 NM_014760 ENSG00000157014 TATDN2 - TatD DNase domain containing 2 protein-coding 436.167-2 chr11 114762380 114763363 + 1.16667 NA Intergenic Intergenic 84344 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 220.833-18 chr4 112146052 112146322 + 1.16667 NA intron (NM_152400, intron 1 of 1) CpG 733 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 247.001-2 chr12 33255151 33255523 + 1.16667 NA Intergenic Intergenic 184482 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 292.334-9 chr6 142298779 142299372 + 1.16667 NA Intergenic Intergenic -2844 NM_001032395 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 258-34 chr7 121371171 121371506 + 1.16667 NA exon (NM_014888, exon 5 of 10) exon (NM_014888, exon 5 of 10) 24970 NM_014888 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 183.167-32 chr5 156474239 156474425 + 1.16667 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 147168 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 233.001-3 chr4 11635661 11635904 + 1.16667 NA Intergenic Intergenic 133686 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 335.001 chr1 100827138 100827806 + 1.16667 NA Intergenic L1MEc|LINE|L1 67370 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 232.001 chr1 92658772 92659022 + 1.16667 NA intron (NM_005665, intron 11 of 17) L1PB4|LINE|L1 126211 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 490.334-4 chr4 36351056 36351674 + 1.16667 NA Intergenic Intergenic 69749 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 172.334-5 chr22 47505064 47505442 + 1.16667 NA Intergenic L1ME1|LINE|L1 -18142 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 205.334-16 chr9 89593754 89593985 + 1.16667 NA Intergenic Intergenic -11143 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 307.167-21 chr5 44614305 44614700 + 1.16667 NA Intergenic Intergenic -104220 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 211.834-5 chr12 65817981 65818317 + 1.16667 NA intron (NR_026825, intron 1 of 1) MLT1G1|LTR|ERVL-MaLR -6311 NM_001330190 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 188.667-15 chr14 37198433 37198850 + 1.16667 NA intron (NM_138731, intron 1 of 13) intron (NM_138731, intron 1 of 13) 704 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 268.167-7 chr14 20594615 20595202 + 1.16667 NA intron (NR_122043, intron 2 of 4) L1MC5a|LINE|L1 -4085 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 222.501-2 chr2 86343324 86343740 + 1.16667 NA Intergenic L1M5|LINE|L1 -5449 NM_001164730 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 237.334-2 chr11 112779899 112780122 + 1.16667 NA Intergenic L2a|LINE|L2 -181410 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 414.833-3 chr10 31861767 31862438 + 1.16667 NA intron (NM_001270696, intron 3 of 17) intron (NM_001270696, intron 3 of 17) 46824 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 244-35 chr7 83406397 83406772 + 1.16667 NA intron (NM_001178129, intron 7 of 16) intron (NM_001178129, intron 7 of 16) 234847 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 200.667-50 chr7 30227615 30227812 + 1.16667 NA Intergenic Intergenic -56884 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 296.167-4 chr11 58796290 58796592 + 1.16667 NA Intergenic Intergenic 48263 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 170.5-43 chr7 114200629 114200856 + 1.16667 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 114415 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 266.167-5 chr6 56074834 56075338 + 1.16667 NA intron (NM_030820, intron 19 of 29) intron (NM_030820, intron 19 of 29) 16576 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 269.667-24 chr5 158375588 158376089 + 1.16667 NA intron (NR_109888, intron 1 of 6) intron (NR_109888, intron 1 of 6) 33935 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 208.167-10 chr14 39225579 39225885 + 1.16667 NA Intergenic Intergenic -8183 NM_054024 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 181.833-28 chrX 46352391 46352665 + 1.16667 NA Intergenic ERVL-int|LTR|ERVL -24854 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 175.5-25 chr16 63427911 63428184 + 1.16667 NA Intergenic Intergenic -1391609 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 179.667-10 chr14 66817131 66817420 + 1.16667 NA intron (NM_001024218, intron 3 of 21) intron (NM_001024218, intron 3 of 21) 309868 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 321-21 chr5 106269186 106269688 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 741577 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 351.001 chr10 55423841 55424283 + 1.16667 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -174980 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 166.167-22 chr20 43943752 43943934 + 1.16667 NA intron (NM_001098796, intron 1 of 8) L1ME4a|LINE|L1 -2053 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 166.667-39 chr3 121358615 121358902 + 1.16667 NA intron (NM_001348343, intron 21 of 27) L1MA1|LINE|L1 187230 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 319.167-5 chr12 121924110 121924415 + 1.16667 NA intron (NM_001178003, intron 3 of 17) AluSx|SINE|Alu 5670 NM_001178003 144406 Hs.709837 NM_144668 ENSG00000158023 WDR66 CFAP251|CaM-IP4|SPGF33 WD repeat domain 66 protein-coding 241.333-14 chr15 67967298 67967715 + 1.16667 NA Intergenic Intergenic -86673 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 207.834-6 chr3 96464115 96464411 + 1.16667 NA Intergenic Intergenic 104299 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 168.167-12 chr17 78289515 78290005 + 1.16667 NA Intergenic AluSp|SINE|Alu -11268 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 227-22 chr22 20509901 20510152 + 1.16667 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 1979 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 250.001 chr2 150554676 150554909 + 1.16667 NA intron (NR_110241, intron 5 of 5) intron (NR_110241, intron 5 of 5) 17429 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 166.5-47 chrX 77791902 77792243 + 1.16667 NA Intergenic AluJb|SINE|Alu -5856 NM_000489 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 351.667-13 chr4 37740643 37741220 + 1.16667 NA Intergenic Intergenic -54555 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 242.167-10 chr15 61151575 61152214 + 1.16667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 77408 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 329.667-5 chr2 52248843 52249240 + 1.16667 NA intron (NR_135237, intron 7 of 10) L1ME3|LINE|L1 -121607 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 260.5-11 chr17 78986811 78987215 + 1.16667 NA Intergenic MER4C|LTR|ERV1 -7090 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 203.333-21 chr14 56599005 56599324 + 1.16667 NA intron (NM_017799, intron 3 of 15) intron (NM_017799, intron 3 of 15) 19366 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 182-11 chr15 78811661 78811876 + 1.16667 NA promoter-TSS (NM_014272) promoter-TSS (NM_014272) -304 NM_014272 11173 Hs.16441 NM_014272 ENSG00000136378 ADAMTS7 ADAM-TS 7|ADAM-TS7|ADAMTS-7 ADAM metallopeptidase with thrombospondin type 1 motif 7 protein-coding 404.834-3 chr2 207073252 207073685 + 1.16667 NA TTS (NM_003709) TTS (NM_003709) 36605 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 288.834-3 chr12 11941755 11942232 + 1.16667 NA Intergenic MSTD|LTR|ERVL-MaLR -107868 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 325.834-6 chr8 144869367 144869790 + 1.16667 NA Intergenic LTR13|LTR|ERVK -16022 NM_001081003 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 369.667-4 chr12 126936307 126936868 + 1.16667 NA intron (NR_104646, intron 4 of 6) LTR28B|LTR|ERV1 -61897 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 166.333-48 chr7 19534528 19534766 + 1.16667 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 170789 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 210.5-29 chr3 180865618 180865933 + 1.16667 NA intron (NR_109986, intron 1 of 13) L1MB8|LINE|L1 4403 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 502.834-3 chr3 32469671 32470624 + 1.16667 NA Intergenic Intergenic 32705 NM_017801 54918 Hs.380627 NM_017801 ENSG00000091317 CMTM6 CKLFSF6|PRO2219 CKLF like MARVEL transmembrane domain containing 6 protein-coding 220.667-16 chr15 38869606 38869873 + 1.16667 NA Intergenic L1MA4|LINE|L1 173141 NR_160786 230.167-15 chr6 38950884 38951262 + 1.16667 NA intron (NM_001371, intron 80 of 91) intron (NM_001371, intron 80 of 91) 2034 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 346.5-11 chr7 33149471 33149999 + 1.16667 NA intron (NM_198428, intron 2 of 22) intron (NM_198428, intron 2 of 22) 20171 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 248.5-6 chr10 27943723 27944128 + 1.16667 NA intron (NM_001290021, intron 5 of 13) intron (NM_001290021, intron 5 of 13) 37946 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 366.5-3 chr16 2878632 2879466 + 1.16667 NA Intergenic AluSx3|SINE|Alu -4146 NM_001142499 114984 Hs.534525 NM_138439 ENSG00000162076 FLYWCH2 - FLYWCH family member 2 protein-coding 172.833-10 chr14 69215694 69216027 + 1.16667 NA intron (NR_034165, intron 4 of 10) L1ME3B|LINE|L1 24094 NM_001193363 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 249.334-5 chr3 70785883 70786232 + 1.16667 NA Intergenic L1MA4|LINE|L1 278867 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 313.667-5 chr14 50061234 50061578 + 1.16667 NA intron (NR_131171, intron 2 of 8) intron (NR_131171, intron 2 of 8) 43637 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 252.5-23 chr7 50534742 50534994 + 1.16667 NA intron (NR_033845, intron 1 of 4) intron (NR_033845, intron 1 of 4) 3109 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 258.834-7 chr4 78646262 78646578 + 1.16667 NA intron (NR_038307, intron 1 of 2) intron (NR_038307, intron 1 of 2) 426 NR_038307 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 255-36 chr6 67687768 67688131 + 1.16667 NA Intergenic AluY|SINE|Alu -367402 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 233.333-31 chr7 79504935 79505273 + 1.16667 NA Intergenic MER76|LTR|ERVL 51144 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 278.334-12 chr8 129054109 129054632 + 1.16667 NA Intergenic MER1A|DNA|hAT-Charlie -88369 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 177.834-5 chr6 33711658 33711858 + 1.16667 NA promoter-TSS (NM_032340) promoter-TSS (NM_032340) -58 NM_032340 84300 Hs.732448 NM_032340 ENSG00000137288 UQCC2 C6orf125|C6orf126|Cbp6|M19|MC3DN7|MNF1|bA6B20.2 ubiquinol-cytochrome c reductase complex assembly factor 2 protein-coding 164.167-34 chr3 127373958 127374147 + 1.16667 NA intron (NR_110147, intron 1 of 4) MER102b|DNA|hAT-Charlie 16618 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 347.333-10 chr20 2237073 2237637 + 1.16667 NA Intergenic Intergenic 30427 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 171.5-17 chr14 60091620 60091926 + 1.16667 NA promoter-TSS (NM_022495) promoter-TSS (NM_022495) -138 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 206.5-9 chr11 84609488 84609866 + 1.16667 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 111265 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 187.834-12 chr9 97037505 97037875 + 1.16667 NA intron (NM_001201575, intron 2 of 7) intron (NM_001201575, intron 2 of 7) 1452 NM_001333 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 298.333-13 chr5 115458032 115458453 + 1.16667 NA Intergenic MSTB|LTR|ERVL-MaLR 86533 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 198.5-44 chrX 41781450 41781663 + 1.16667 NA intron (NM_003688, intron 3 of 26) intron (NM_003688, intron 3 of 26) 57375 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 218.167-25 chr8 118274761 118275005 + 1.16667 NA intron (NM_001101676, intron 4 of 4) L1ME3E|LINE|L1 -163064 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 313.501-3 chr8 100257469 100257787 + 1.16667 NA 3' UTR (NM_001353838, exon 10 of 10) 3' UTR (NM_001353838, exon 10 of 10) 44565 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 289.333-14 chr2 21419024 21419397 + 1.16667 NA Intergenic MIRb|SINE|MIR 291442 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 326.001-2 chr7 105580298 105580627 + 1.16667 NA intron (NM_001355527, intron 1 of 3) AluSz|SINE|Alu 1031 NM_001355526 100130771 Hs.719432 NM_001355526 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 protein-coding 222.167-39 chr8 72938189 72938499 + 1.16667 NA TTS (NM_004770) TTS (NM_004770) -70520 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 322.833-4 chr3 21833292 21833805 + 1.16667 NA Intergenic MLT1D|LTR|ERVL-MaLR -82338 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 231.667-27 chr7 35762114 35762501 + 1.16667 NA intron (NR_120511, intron 3 of 5) intron (NR_120511, intron 3 of 5) 38318 NR_120512 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 176-35 chr5 125595691 125595950 + 1.16667 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 102559 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 374.167-2 chr12 122266277 122266995 + 1.16667 NA promoter-TSS (NM_022916) promoter-TSS (NM_022916) -142 NM_001351021 65082 Hs.487883 NM_022916 ENSG00000139719 VPS33A MPSPS VPS33A core subunit of CORVET and HOPS complexes protein-coding 216.5-41 chr7 39818327 39818566 + 1.16667 NA Intergenic Intergenic 84878 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 407.501-2 chr13 100392746 100393197 + 1.16667 NA intron (NR_148027, intron 20 of 23) MIRc|SINE|MIR 88044 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 248.001 chr11 97361789 97362061 + 1.16667 NA Intergenic Intergenic 853500 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 218.667-30 chr5 50991618 50991943 + 1.16667 NA Intergenic Intergenic -21593 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 282.5-3 chr10 29784726 29785213 + 1.16667 NA Intergenic L1MDa|LINE|L1 -48033 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 261-27 chrX 53071398 53071873 + 1.16667 NA intron (NM_018969, intron 1 of 1) MER20B|DNA|hAT-Charlie -10732 NM_022117 64061 Hs.136164 NM_022117 ENSG00000184205 TSPYL2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX TSPY like 2 protein-coding 195.167-9 chr12 54188706 54188983 + 1.16667 NA 5' UTR (NM_001243789, exon 1 of 6) 5' UTR (NM_001243789, exon 1 of 6) 113 NM_001351247 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 165.333-52 chr9 93096543 93096785 + 1.16667 NA intron (NR_134468, intron 1 of 4) CpG 447 NM_001318010 84270 Hs.434213 NM_032310 ENSG00000165233 CARD19 BinCARD|C9orf89 caspase recruitment domain family member 19 protein-coding 262.334-5 chr12 6543655 6543960 + 1.16667 NA intron (NM_001330324, intron 7 of 8) AluSp|SINE|Alu 8543 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 203.5-16 chr14 71974439 71974688 + 1.16667 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 41036 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 257-22 chr3 103565671 103566085 + 1.16667 NA Intergenic Intergenic -41762 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 290.334-15 chr9 3760213 3760663 + 1.16667 NA Intergenic Intergenic 92352 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 268.5-8 chr11 90204627 90205060 + 1.16667 NA intron (NM_012124, intron 8 of 10) intron (NM_012124, intron 8 of 10) 18206 NM_012124 26973 Hs.22857 NM_012124 ENSG00000110172 CHORDC1 CHP1 cysteine and histidine rich domain containing 1 protein-coding 219-19 chr2 196998295 196998545 + 1.16667 NA intron (NM_001367496, intron 24 of 27) intron (NM_001367496, intron 24 of 27) -71713 NM_024989 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 226.001 chr4 79023628 79023849 + 1.16667 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 51990 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 213.167-17 chr3 65834258 65834596 + 1.16667 NA intron (NM_001365904, intron 1 of 24) L1MDa|LINE|L1 -59389 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 219.667-23 chr3 138941229 138941441 + 1.16667 NA intron (NR_121649, intron 2 of 2) intron (NR_121649, intron 2 of 2) 2685 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 183-5 chr10 67009373 67009863 + 1.16667 NA intron (NR_111911, intron 1 of 6) intron (NR_111911, intron 1 of 6) 2535 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 190.5-15 chr14 55827270 55827455 + 1.16667 NA Intergenic L2c|LINE|L2 -30688 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 494.167 chr10 59621006 59621701 + 1.16667 NA Intergenic Intergenic 88538 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 333.001 chr10 124755989 124756452 + 1.16667 NA Intergenic Intergenic -11842 NM_014661 9679 Hs.129195 NM_014661 ENSG00000189319 FAM53B KIAA0140|bA12J10.2|smp family with sequence similarity 53 member B protein-coding 192.5-27 chr3 23629559 23629906 + 1.16667 NA Intergenic LTR85a|LTR|Gypsy? -176223 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 171.5-50 chr9 104742859 104743095 + 1.16667 NA Intergenic Intergenic -4706 NM_001329570 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 353.334-11 chr8 9830011 9830449 + 1.16667 NA Intergenic Intergenic 73099 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 240.834-9 chr6 80094192 80094622 + 1.16667 NA Intergenic Intergenic -12203 NM_000056 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 296.334-5 chr15 90317141 90317451 + 1.16667 NA Intergenic L1ME3G|LINE|L1 32151 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 181.5-32 chr4 87804832 87805212 + 1.16667 NA intron (NM_004967, intron 4 of 6) intron (NM_004967, intron 4 of 6) 5468 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 199.167-16 chr20 35224828 35225218 + 1.16667 NA intron (NM_001355008, intron 3 of 14) MIR|SINE|MIR -1667 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 239.667-40 chr7 103798146 103798387 + 1.16667 NA intron (NM_005045, intron 3 of 64) MIR|SINE|MIR 191250 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 199.5-22 chr18 76192866 76193256 + 1.16667 NA Intergenic L1MA9|LINE|L1 -16449 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 191.167-19 chr3 64029209 64029390 + 1.16667 NA Intergenic Intergenic -5289 NM_001271780 9861 Hs.152536 NM_014814 ENSG00000163636 PSMD6 Rpn7|S10|SGA-113M|p42A|p44S10 proteasome 26S subunit, non-ATPase 6 protein-coding 195.333-13 chr16 63952571 63952871 + 1.16667 NA Intergenic L1ME2z|LINE|L1 1169342 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 237.334-13 chr6 3632554 3632907 + 1.16667 NA Intergenic L1M5|LINE|L1 119282 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 365.334-6 chr2 55717797 55718814 + 1.16667 NA Intergenic Intergenic -24461 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 217.334-2 chr10 68897590 68897845 + 1.16667 NA Intergenic Intergenic -3598 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 171.667-49 chr5 27558586 27558778 + 1.16667 NA Intergenic L1MB8|LINE|L1 86390 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 298.001-3 chr3 24553548 24553907 + 1.16667 NA Intergenic L1MB8|LINE|L1 -58019 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 177.334-4 chr14 64762167 64762625 + 1.16667 NA intron (NM_001024858, intron 31 of 34) intron (NM_001024858, intron 31 of 34) 23290 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 230-41 chr8 117213634 117213961 + 1.16667 NA Intergenic LTR33|LTR|ERVL 78802 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 264-13 chr14 52394165 52394539 + 1.16667 NA Intergenic Intergenic 80040 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 226.5-11 chr12 49350869 49351145 + 1.16667 NA intron (NM_024902, intron 2 of 2) intron (NM_024902, intron 2 of 2) 4119 NM_024902 79962 Hs.659300 NM_024902 ENSG00000178401 DNAJC22 wus DnaJ heat shock protein family (Hsp40) member C22 protein-coding 250.001-3 chr7 84834400 84834628 + 1.16667 NA Intergenic Intergenic 287417 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 202.167-21 chr2 59970421 59970657 + 1.16667 NA Intergenic Intergenic 412497 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 201.834 chr12 37668357 37668724 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -648234 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 457 chr18 36134796 36135480 + 1.16667 NA intron (NR_040110, intron 2 of 21) intron (NR_040110, intron 2 of 21) 5239 NR_137173 55250 Hs.8739 NM_018255 ENSG00000134759 ELP2 MRT58|SHINC-2|STATIP1|StIP elongator acetyltransferase complex subunit 2 protein-coding 226.667-10 chr11 111795586 111795830 + 1.16667 NA intron (NM_001352420, intron 14 of 15) Tigger12|DNA|TcMar-Tigger -29319 NM_002716 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 171.834-7 chr8 59652567 59652919 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 533533 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 302.001 chr20 51966022 51966567 + 1.16667 NA Intergenic Intergenic -103381 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 253-3 chr1 208299231 208299573 + 1.16667 NA Intergenic Tigger7|DNA|TcMar-Tigger -55018 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 203.501-4 chr5 23818166 23818354 + 1.16667 NA Intergenic Intergenic -133088 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 464.5 chr1 53145605 53146399 + 1.16667 NA Intergenic Helitron3Na_Mam|RC|Helitron -3364 NM_006671 6512 Hs.104637 NM_006671 ENSG00000162383 SLC1A7 AAAT|EAAT5 solute carrier family 1 member 7 protein-coding 183.667-15 chr14 74914144 74914519 + 1.16667 NA intron (NR_163406, intron 3 of 11) intron (NR_163406, intron 3 of 11) 8111 NR_163406 83694 Hs.414481 NM_031464 ENSG00000198208 RPS6KL1 RSKL2 ribosomal protein S6 kinase like 1 protein-coding 191.667-28 chr2 77661212 77661682 + 1.16667 NA Intergenic Intergenic -139014 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 244-11 chr2 43554349 43554618 + 1.16667 NA intron (NM_001083953, intron 17 of 37) L1M5|LINE|L1 41491 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 184.667-20 chr15 98568221 98568500 + 1.16667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -54024 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 231-13 chr18 80221599 80221854 + 1.16667 NA intron (NM_032510, intron 1 of 2) L1M4|LINE|L1 25788 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 203.167-31 chr7 14410250 14410648 + 1.16667 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) -419024 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 225.667-33 chr5 129728427 129728781 + 1.16667 NA intron (NM_133638, intron 21 of 22) intron (NM_133638, intron 21 of 22) -19490 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 260.167-3 chr10 33654137 33654738 + 1.16667 NA Intergenic AluSx3|SINE|Alu 118243 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 296.834-9 chr8 124136834 124137235 + 1.16667 NA intron (NR_103547, intron 1 of 4) MLT1I|LTR|ERVL-MaLR 34488 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 171.167-18 chr17 62588839 62589104 + 1.16667 NA intron (NM_001284363, intron 14 of 19) intron (NM_001284363, intron 14 of 19) -38699 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 220.833-31 chr9 100335849 100336184 + 1.16667 NA intron (NM_001161584, intron 5 of 14) AluSq|SINE|Alu 16555 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 259.333-32 chrX 95076449 95076892 + 1.16667 NA Intergenic HUERS-P3-int|LTR|ERV1 -13444 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 208.834-7 chr6 113956407 113956903 + 1.16667 NA non-coding (NR_073443, exon 4 of 14) non-coding (NR_073443, exon 4 of 14) -13046 NR_125845 101927768 Hs.129280 NR_125845 ENSG00000228624 HDAC2-AS2 - HDAC2 and HS3ST5 antisense RNA 2 ncRNA 237.167-3 chr10 61547069 61547427 + 1.16667 NA Intergenic Intergenic 67207 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 223.834-9 chr21 36125732 36126023 + 1.16667 NA intron (NR_040084, intron 1 of 3) intron (NR_040084, intron 1 of 3) 763 NR_040084 100133286 Hs.728809 NR_040084 ENSG00000230212 LOC100133286 - uncharacterized LOC100133286 ncRNA 219.834-10 chr7 42455114 42455442 + 1.16667 NA Intergenic Intergenic -218069 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 313.001-2 chr2 35123571 35123940 + 1.16667 NA Intergenic Intergenic -347650 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 268.334-4 chr15 99569515 99569969 + 1.16667 NA intron (NM_001352616, intron 1 of 10) intron (NM_001352616, intron 1 of 10) 3259 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 263.5-13 chr18 5092005 5092434 + 1.16667 NA intron (NR_146900, intron 2 of 3) FLAM_A|SINE|Alu 11037 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 289.834-7 chrX 131710784 131711060 + 1.16667 NA intron (NR_026975, intron 11 of 12) intron (NR_026975, intron 11 of 12) 119721 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 306.167-6 chr18 50268686 50269096 + 1.16667 NA TTS (NM_001204136) TTS (NM_001204136) -2396 NM_145020 220136 Hs.658630 NM_145020 ENSG00000172361 CFAP53 CCDC11|HTX6 cilia and flagella associated protein 53 protein-coding 205.834-3 chr10 84789710 84790136 + 1.16667 NA Intergenic L2a|LINE|L2 364754 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 305-16 chr6 68226641 68227090 + 1.16667 NA TTS (NR_125854) TTS (NR_125854) 103034 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 227.167-25 chr7 108636911 108637176 + 1.16667 NA Intergenic MER63B|DNA|hAT-Blackjack 67169 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 282.001-2 chr9 130949019 130949762 + 1.16667 NA Intergenic Intergenic -10143 NM_032843 84929 Hs.133205 NM_032843 ENSG00000130720 FIBCD1 - fibrinogen C domain containing 1 protein-coding 725.667-2 chr15 69728361 69729680 + 1.16667 NA Intergenic Intergenic -106214 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 255.834-7 chr8 38977801 38978499 + 1.16667 NA intron (NM_153692, intron 4 of 8) intron (NM_153692, intron 4 of 8) 3922 NM_153692 203100 Hs.661014 NM_153692 ENSG00000169495 HTRA4 - HtrA serine peptidase 4 protein-coding 180-6 chr10 68432468 68432674 + 1.16667 NA intron (NM_001080449, intron 10 of 20) intron (NM_001080449, intron 10 of 20) -25277 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 235.833-13 chr3 405253 405607 + 1.16667 NA intron (NM_001253388, intron 24 of 24) intron (NM_001253388, intron 24 of 24) -19635 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 173-20 chr16 2946463 2946830 + 1.16667 NA intron (NM_032296, intron 9 of 9) L1MB8|LINE|L1 -17629 NM_172229 79412 Hs.661128 NM_024507 ENSG00000131650 KREMEN2 KRM2 kringle containing transmembrane protein 2 protein-coding 286.167-17 chr5 107248053 107248298 + 1.16667 NA Intergenic Intergenic -237161 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 344.667-2 chr10 108005536 108005887 + 1.16667 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 63582 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 336.334-3 chr15 79310784 79311166 + 1.16667 NA promoter-TSS (NM_001363735) promoter-TSS (NM_001363735) -87 NR_125394 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 278.833-13 chrX 119119003 119119410 + 1.16667 NA intron (NM_020721, intron 3 of 13) intron (NM_020721, intron 3 of 13) 31373 NM_020721 57481 Hs.97594 NM_020721 ENSG00000250423 KIAA1210 - KIAA1210 protein-coding 354.834-5 chr7 32883211 32883760 + 1.16667 NA intron (NM_015483, intron 1 of 3) intron (NM_015483, intron 1 of 3) 8275 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 432.834 chr1 217660460 217661003 + 1.16667 NA intron (NM_138796, intron 3 of 10) MLT1I|LTR|ERVL-MaLR 29387 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 394-6 chr17 63116001 63116613 + 1.16667 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 150072 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 222.834 chr14 63437349 63437623 + 1.16667 NA intron (NR_104104, intron 2 of 12) intron (NR_104104, intron 2 of 12) 70752 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 199.667-10 chr10 83764558 83764785 + 1.16667 NA Intergenic MER65D|LTR|ERV1 -87582 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 163.333-22 chr15 61617374 61617617 + 1.16667 NA Intergenic L1MB1|LINE|L1 -112423 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 217.667-31 chr5 38980207 38980508 + 1.16667 NA intron (NM_001285439, intron 8 of 38) L1MEg|LINE|L1 94042 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 179.334-6 chr2 232856748 232856966 + 1.16667 NA exon (NM_001103147, exon 31 of 31) exon (NM_001103147, exon 31 of 31) -12157 NM_001346122 389084 Hs.657509 NM_206895 ENSG00000182600 SNORC ASCL830|C2orf82|UNQ830 secondary ossification center associated regulator of chondrocyte maturation protein-coding 204.834-3 chr14 64721306 64721562 + 1.16667 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 17010 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 277.834-5 chr6 136471577 136471850 + 1.16667 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) -4838 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 295.667-11 chr2 4128438 4128866 + 1.16667 NA Intergenic Intergenic 154491 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 318.834-6 chr2 218257390 218257947 + 1.16667 NA Intergenic Intergenic -1828 NM_001321950 151306 Hs.160954 NM_170699 ENSG00000179921 GPBAR1 BG37|GPCR19|GPR131|M-BAR|TGR5 G protein-coupled bile acid receptor 1 protein-coding 345.667-2 chr14 67819340 67819811 + 1.16667 NA promoter-TSS (NM_001321819) promoter-TSS (NM_001321819) -204 NM_001321810 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 299.501 chr14 54434628 54434943 + 1.16667 NA intron (NM_005776, intron 2 of 4) intron (NM_005776, intron 2 of 4) 6589 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 245.833-5 chr10 98329859 98330226 + 1.16667 NA Intergenic Intergenic -61848 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 327.834-3 chr14 51652144 51652817 + 1.16667 NA promoter-TSS (NR_037676) intron (NM_001267046, intron 1 of 13) 570 NM_152330 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 276-24 chr7 1459275 1459728 + 1.16667 NA promoter-TSS (NM_182924) promoter-TSS (NM_182924) -31 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 247.334-3 chr7 54340230 54340637 + 1.16667 NA intron (NR_120516, intron 1 of 2) Charlie1|DNA|hAT-Charlie 9736 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 243.334-2 chr10 11516641 11516919 + 1.16667 NA intron (NM_014688, intron 5 of 14) Tigger13a|DNA|TcMar-Tigger 15500 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 255.667-3 chr1 222637471 222637815 + 1.16667 NA intron (NM_198551, intron 6 of 27) L1MC5|LINE|L1 -6660 NM_001300867 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 368-13 chr8 120420147 120420733 + 1.16667 NA intron (NM_014078, intron 4 of 6) (AT)n|Simple_repeat|Simple_repeat 24710 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 165.333-28 chr3 96642445 96642702 + 1.16667 NA Intergenic Intergenic -172021 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 178-11 chr15 67556348 67556641 + 1.16667 NA intron (NM_001206804, intron 2 of 21) intron (NM_001206804, intron 2 of 21) 7400 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 184.834-4 chr12 46290287 46290572 + 1.16667 NA Intergenic L1MA4|LINE|L1 -21386 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 368.834 chr1 158881776 158882235 + 1.16667 NA Intergenic Intergenic -49547 NM_152501 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 337.167-2 chr11 40841727 40842102 + 1.16667 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -548784 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 167.667-3 chr10 86494707 86494912 + 1.16667 NA intron (NM_001318328, intron 4 of 18) Charlie1a|DNA|hAT-Charlie 26975 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 335.5-14 chr7 143351744 143352220 + 1.16667 NA non-coding (NR_046453, exon 22 of 22) non-coding (NR_046453, exon 22 of 22) 10098 NM_001371249 215.667-20 chr2 53104410 53104646 + 1.16667 NA Intergenic Intergenic -401913 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 541.5-4 chr16 22000739 22001578 + 1.16667 NA promoter-TSS (NM_001363519).2 promoter-TSS (NM_001363519).2 -42 NM_001370530 255762 Hs.98244 NM_173806 ENSG00000155714 PDZD9 C16orf65 PDZ domain containing 9 protein-coding 461.501 chr10 81116208 81116806 + 1.16667 NA Intergenic Intergenic 466710 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 186.167-24 chr7 53350227 53350479 + 1.16667 NA Intergenic LTR16A|LTR|ERVL 314720 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 311.667-19 chr8 75088756 75089057 + 1.16667 NA Intergenic Intergenic 88751 NM_001286777 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 216.834-15 chr9 27723487 27723773 + 1.16667 NA Intergenic Intergenic -149764 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 238.167-26 chr7 85861319 85861705 + 1.16667 NA Intergenic Intergenic 440390 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 211-45 chr8 92119081 92119420 + 1.16667 NA Intergenic L1MEg|LINE|L1 -15865 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 311.833-2 chr19 49672271 49672738 + 1.16667 NA intron (NM_001040668, intron 6 of 6) L2c|LINE|L2 -4648 NM_001536 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 165.834 chr1 107159818 107159970 + 1.16667 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 11825 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 201.667-21 chr2 29291556 29291838 + 1.16667 NA intron (NM_004304, intron 9 of 28) intron (NM_004304, intron 9 of 28) -67797 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 180.334-7 chr7 106946589 106946779 + 1.16667 NA Intergenic Intergenic 81205 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 170.667-44 chr6 99313877 99314023 + 1.16667 NA intron (NR_144463, intron 4 of 5) L2b|LINE|L2 35724 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 193-10 chr14 25431289 25431631 + 1.16667 NA Intergenic Intergenic -381163 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 228.5-7 chr15 66822757 66823116 + 1.16667 NA Intergenic Intergenic 120700 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 374.833-2 chr2 164434645 164435116 + 1.16667 NA Intergenic Intergenic 133615 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 272.334-2 chr10 13583274 13583743 + 1.16667 NA Intergenic Intergenic -3457 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 226.834-10 chr4 104653700 104654030 + 1.16667 NA intron (NR_125926, intron 4 of 9) L1MCa|LINE|L1 -158971 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 203.667-12 chr11 116927148 116927327 + 1.16667 NA exon (NM_025164, exon 4 of 24) exon (NM_025164, exon 4 of 24) -89287 NM_001318021 335 Hs.93194 NM_000039 ENSG00000118137 APOA1 apo(a) apolipoprotein A1 protein-coding 173.333-25 chr4 47813755 47814132 + 1.16667 NA intron (NM_006587, intron 1 of 21) intron (NM_006587, intron 1 of 21) -17402 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 200.5-22 chr2 24201556 24201923 + 1.16667 NA Intergenic Intergenic 26686 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 203.833-20 chr5 132880990 132881313 + 1.16667 NA exon (NM_014423, exon 21 of 21) exon (NM_014423, exon 21 of 21) 7483 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 320-10 chr20 9484896 9485443 + 1.16667 NA Intergenic AluSx|SINE|Alu -29189 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 247.167-10 chr18 47204730 47205166 + 1.16667 NA Intergenic Intergenic -28584 NM_016097 51124 Hs.130917 NM_016097 ENSG00000134049 IER3IP1 HSPC039|MEDS|PRO2309 immediate early response 3 interacting protein 1 protein-coding 320-2 chr1 165116593 165117183 + 1.16667 NA Intergenic Intergenic 239353 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 174.667-43 chr5 7397066 7397311 + 1.16667 NA intron (NM_020546, intron 1 of 24) intron (NM_020546, intron 1 of 24) 1050 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 349.833-15 chr8 136090656 136091167 + 1.16667 NA Intergenic Intergenic -439887 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 193.334-9 chr3 26248916 26249121 + 1.16667 NA Intergenic Intergenic -373788 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 245.501 chr7 6114304 6114575 + 1.16667 NA intron (NM_032172, intron 2 of 17) L1MC5|LINE|L1 9490 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 166.667-20 chr16 86207932 86208110 + 1.16667 NA Intergenic Intergenic 11840 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 195.5-27 chr4 73375669 73376004 + 1.16667 NA Intergenic Intergenic -28451 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 410.001 chr2 81265845 81266538 + 1.16667 NA Intergenic Intergenic 200755 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 205.5-12 chr12 7215057 7215393 + 1.16667 NA intron (NM_001131026, intron 17 of 17) L1PA16|LINE|L1 24863 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 264.5-7 chr15 25105337 25105662 + 1.16667 NA TTS (NR_003361) TTS (NR_003361) 858 NR_003361 100033820 NR_003361 ENSG00000278123 SNORD116-28 HBII-85-28 small nucleolar RNA, C/D box 116-28 snoRNA 242.167-5 chr12 53420486 53420823 + 1.16667 NA Intergenic Intergenic -3201 NM_001164690 269 Hs.659889 NM_020547 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor type 2 protein-coding 353.667-7 chr2 97740403 97741028 + 1.16667 NA TTS (NM_001079) TTS (NM_001079) 6309 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 167.833-37 chr5 13504196 13504561 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR 440102 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 437.167-4 chr2 233982209 233982873 + 1.16667 NA intron (NM_024080, intron 19 of 25) intron (NM_024080, intron 19 of 25) 65168 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 229-28 chr7 124654947 124655281 + 1.16667 NA Intergenic L1MD1|LINE|L1 110678 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 208.167-15 chr2 163983042 163983260 + 1.16667 NA Intergenic Charlie2b|DNA|hAT-Charlie -247143 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 230.834-7 chr5 61358570 61358979 + 1.16667 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 26516 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 286.5-7 chr17 76147454 76148024 + 1.16667 NA intron (NR_040017, intron 6 of 7) intron (NR_040017, intron 6 of 7) -6494 NM_001454 2302 Hs.651204 NM_001454 ENSG00000129654 FOXJ1 FKHL13|HFH-4|HFH4 forkhead box J1 protein-coding 239.334-16 chr9 121529685 121529938 + 1.16667 NA Intergenic Intergenic -29784 NR_003191 2681 Hs.97469 NR_003191 ENSG00000204136 GGTA1P GGTA|GGTA1|GLYT2|a1/3GTP glycoprotein alpha-galactosyltransferase 1, pseudogene pseudo 175.167-38 chr5 132372187 132372365 + 1.16667 NA intron (NM_003060, intron 1 of 9) intron (NM_003060, intron 1 of 9) -2360 NR_110997 553103 Hs.570908 NR_110997 ENSG00000233006 MIR3936HG SLC22A5-AS1 MIR3936 host gene ncRNA 198.334-7 chr5 51904627 51904822 + 1.16667 NA Intergenic Intergenic -103307 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 343.001 chr17 54302442 54302842 + 1.16667 NA Intergenic Intergenic 479715 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 359.334 chr1 208669172 208669563 + 1.16667 NA Intergenic Intergenic -59321 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 272-15 chr14 75145812 75146161 + 1.16667 NA intron (NM_006827, intron 3 of 4) intron (NM_006827, intron 3 of 4) -18938 NM_033116 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 188.834 chr11 26335770 26335975 + 1.16667 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 3742 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 167.834-7 chr2 33240322 33240489 + 1.16667 NA intron (NM_206943, intron 9 of 33) intron (NM_206943, intron 9 of 33) 105808 NM_001166266 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 220.834-3 chr2 84700174 84700467 + 1.16667 NA intron (NM_001370, intron 48 of 76) L2|LINE|L2 180764 NM_001277053 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 230.667-21 chr5 42242843 42243162 + 1.16667 NA Intergenic Intergenic -67657 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 211.334-5 chr19 28525292 28525537 + 1.16667 NA intron (NR_110759, intron 5 of 9) PABL_A-int|LTR|ERV1 -81274 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 213.667-24 chr2 72893772 72894090 + 1.16667 NA Intergenic Intergenic 6523 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 193.667-43 chr4 141635178 141635379 + 1.16667 NA Intergenic Charlie17b|DNA|hAT-Charlie -1305 NR_037840 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 204.667-26 chr2 111619962 111620215 + 1.16667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -124927 NR_024373 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 197.334-6 chr2 122541084 122541529 + 1.16667 NA Intergenic LTR16A|LTR|ERVL 532175 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 214.834-4 chr14 79368235 79368568 + 1.16667 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 89021 NR_073546 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 253-33 chrX 56281510 56281948 + 1.16667 NA intron (NM_001324104, intron 6 of 6) intron (NM_001324104, intron 6 of 6) 48571 NR_136704 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 403.334-2 chr14 32560983 32561668 + 1.16667 NA intron (NM_004274, intron 4 of 13) MIR3|SINE|MIR 232027 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 193.167 chr1 56663247 56663548 + 1.16667 NA intron (NM_006252, intron 1 of 8) HSMAR2|DNA|TcMar-Mariner -18079 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 214.834-6 chr22 44953803 44954009 + 1.16667 NA intron (NM_001284296, intron 2 of 13) MIR|SINE|MIR 49713 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 180.167-12 chr2 72030026 72030271 + 1.16667 NA Intergenic Intergenic 117714 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 221-4 chr10 103230850 103231400 + 1.16667 NA Intergenic AluJr4|SINE|Alu -14762 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 197.333-11 chr17 81346426 81346790 + 1.16667 NA Intergenic CpG -37360 NR_038080 284185 Hs.631762 NM_178519 LINC00482 C17orf55 long intergenic non-protein coding RNA 482 ncRNA 289.334-4 chr12 105029950 105030249 + 1.16667 NA intron (NR_027752, intron 21 of 22) intron (NR_027752, intron 21 of 22) 43783 NM_152318 121053 Hs.295563 NM_152318 ENSG00000151131 C12orf45 - chromosome 12 open reading frame 45 protein-coding 412.167-5 chr6 96521779 96522296 + 1.16667 NA intron (NM_015323, intron 1 of 18) CpG 231 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 242.167-31 chr8 124642182 124642555 + 1.16667 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 86105 NM_001363295 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 274.834-6 chr6 98182321 98182749 + 1.16667 NA Intergenic L1MC3|LINE|L1 158004 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 218.334-5 chr2 125950382 125950875 + 1.16667 NA Intergenic L1MA5|LINE|L1 167357 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 259.333-10 chr12 14875386 14875813 + 1.16667 NA Intergenic Intergenic 10255 NM_001190839 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 167.167-31 chr7 31662202 31662421 + 1.16667 NA Intergenic LTR86A1|LTR|ERVL -24706 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 192.167-18 chr17 61173881 61174145 + 1.16667 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 193691 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 229.667-5 chr10 86893302 86893677 + 1.16667 NA intron (NM_004329, intron 5 of 12) intron (NM_004329, intron 5 of 12) -62270 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 234-10 chr11 93648809 93649087 + 1.16667 NA Intergenic Intergenic -12734 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 263.001 chr14 49465096 49465346 + 1.16667 NA Intergenic Intergenic 121159 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 283.501-3 chr8 27828208 27828506 + 1.16667 NA intron (NM_001278945, intron 2 of 7) L1ME4b|LINE|L1 9460 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 221.501 chr16 73748492 73748715 + 1.16667 NA Intergenic Intergenic 361798 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 175.667-10 chr10 113652045 113652218 + 1.16667 NA intron (NM_001322945, intron 6 of 40) MIR|SINE|MIR 11910 NM_198060 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 186.333-26 chr20 973892 974130 + 1.16667 NA intron (NM_001029871, intron 1 of 4) intron (NM_001029871, intron 1 of 4) 28300 NM_001029871 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 293.667-3 chr11 93536571 93536856 + 1.16667 NA intron (NM_020179, intron 1 of 2) intron (NM_020179, intron 1 of 2) 6678 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 167.834-3 chr12 70716727 70716997 + 1.16667 NA intron (NM_130846, intron 2 of 9) intron (NM_130846, intron 2 of 9) 37746 NM_130846 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 241.5-4 chr12 6133388 6133763 + 1.16667 NA Intergenic LTR12C|LTR|ERV1 -8900 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 181.167-31 chr8 27162710 27162938 + 1.16667 NA Intergenic Intergenic 95580 NM_001283053 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 241.167-22 chr3 157573721 157574115 + 1.16667 NA intron (NM_001130002, intron 4 of 4) intron (NM_001130002, intron 4 of 4) 30574 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 203-21 chr20 53203628 53204105 + 1.16667 NA intron (NM_001193421, intron 1 of 2) MER33|DNA|hAT-Charlie 18583 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 268.667-2 chr1 111619917 111620182 + 1.16667 NA promoter-TSS (NM_001291896) promoter-TSS (NM_001291896) -98 NM_001291896 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 471.167-5 chr3 27133803 27134396 + 1.16667 NA intron (NM_001304384, intron 12 of 16) GA-rich|Low_complexity|Low_complexity 82424 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 206 chr1 23185632 23185948 + 1.16667 NA Intergenic L3|LINE|CR1 8939 NM_000864 3352 Hs.121482 NM_000864 ENSG00000179546 HTR1D 5-HT1D|HT1DA|HTR1DA|HTRL|RDC4 5-hydroxytryptamine receptor 1D protein-coding 310.334-6 chr8 84174196 84174666 + 1.16667 NA Intergenic Intergenic -8356 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 257-36 chrX 97838300 97838667 + 1.16667 NA Intergenic Intergenic -273948 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 317.501-2 chr7 129743165 129743551 + 1.16667 NA intron (NM_005011, intron 10 of 10) intron (NM_005011, intron 10 of 10) 27134 NR_029614 406958 NR_029614 ENSG00000207990 MIR182 MIRN182|miRNA182|mir-182 microRNA 182 ncRNA 234.334-7 chr6 71685545 71685926 + 1.16667 NA Intergenic Intergenic -200968 NM_001350411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 216.001-2 chr8 105993777 105993989 + 1.16667 NA intron (NR_125797, intron 1 of 4) (AT)n|Simple_repeat|Simple_repeat 66620 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 397.5-4 chr11 17528061 17528562 + 1.16667 NA intron (NR_123738, intron 4 of 19) intron (NR_123738, intron 4 of 19) 16105 NM_001297764 10083 Hs.502072 NM_005709 ENSG00000006611 USH1C AIE-75|DFNB18|DFNB18A|NY-CO-37|NY-CO-38|PDZ-45|PDZ-73|PDZ-73/NY-CO-38|PDZ73|PDZD7C|ush1cpst USH1 protein network component harmonin protein-coding 224.5-26 chr3 17397904 17398261 + 1.16667 NA intron (NM_014744, intron 8 of 21) intron (NM_014744, intron 8 of 21) 301938 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 218.834-4 chr19 4186565 4186837 + 1.16667 NA intron (NM_133475, intron 2 of 21) intron (NM_133475, intron 2 of 21) 3347 NM_133475 170961 Hs.197872 NM_133475 ENSG00000089847 ANKRD24 - ankyrin repeat domain 24 protein-coding 301.167-18 chr7 6696096 6696427 + 1.16667 NA intron (NM_006956, intron 4 of 5) intron (NM_006956, intron 4 of 5) 10686 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 200.667-18 chr16 75647667 75647862 + 1.16667 NA promoter-TSS (NM_005548) promoter-TSS (NM_005548) -9 NM_018975 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 349.167-5 chr18 59308407 59309121 + 1.16667 NA intron (NM_181654, intron 2 of 2) CpG 9885 NM_181654 339302 Hs.449884 NM_181654 ENSG00000166569 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 180-9 chr11 10157704 10158222 + 1.16667 NA intron (NM_030962, intron 2 of 39) L1M3|LINE|L1 136244 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 226-28 chr21 29899557 29899891 + 1.16667 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 40272 NM_001330993 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 186.5-7 chr14 45645176 45645348 + 1.16667 NA Intergenic L1ME3A|LINE|L1 70340 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 264.834-9 chr6 142568978 142569360 + 1.16667 NA intron (NR_027312, intron 1 of 2) intron (NR_027312, intron 1 of 2) 68667 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 233.167-18 chr6 55917363 55917699 + 1.16667 NA Intergenic Intergenic -41941 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 206.667-19 chr17 27784322 27784625 + 1.16667 NA intron (NM_000625, intron 5 of 26) intron (NM_000625, intron 5 of 26) 16056 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 206.834-9 chr2 10843781 10844098 + 1.16667 NA Intergenic MIRb|SINE|MIR -6227 NM_001282705 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 319.5-3 chr11 77675438 77675884 + 1.16667 NA intron (NM_016578, intron 13 of 15) L2c|LINE|L2 -37855 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 311.5-22 chr7 37481205 37481719 + 1.16667 NA Intergenic Intergenic -32136 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 185.167-6 chr11 66268428 66268599 + 1.16667 NA promoter-TSS (NM_030981) promoter-TSS (NM_030981) -126 NM_030981 81876 Hs.300816 NM_030981 ENSG00000174903 RAB1B - RAB1B, member RAS oncogene family protein-coding 199-14 chr15 94012301 94012567 + 1.16667 NA intron (NR_120320, intron 2 of 8) L1ME4a|LINE|L1 95504 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 181.834-11 chr7 6379073 6379570 + 1.16667 NA intron (NM_006908, intron 1 of 5) AluSq|SINE|Alu 4794 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 373.001 chr17 30406334 30406695 + 1.16667 NA intron (NM_001304, intron 2 of 20) intron (NM_001304, intron 2 of 20) 26036 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 216.667-12 chr14 43870892 43871129 + 1.16667 NA Intergenic L1M1|LINE|L1 636273 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 360.834-5 chr2 98113565 98113999 + 1.16667 NA intron (NR_144297, intron 2 of 18) L1MB5|LINE|L1 26615 NM_144992 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 298.334-3 chr11 64742542 64742966 + 1.16667 NA intron (NM_001098671, intron 2 of 16) CpG-4419 1388 NM_001098671 10235 Hs.99491 NM_005825 ENSG00000068831 RASGRP2 CALDAG-GEFI|CDC25L RAS guanyl releasing protein 2 protein-coding 264.667-18 chr8 113171903 113172338 + 1.16667 NA intron (NM_001363185, intron 4 of 66) LTR40a|LTR|ERVL 205032 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 268-38 chrX 17690274 17690550 + 1.16667 NA intron (NM_001291868, intron 2 of 7) intron (NM_001291868, intron 2 of 7) -47037 NM_001037535 6322 Hs.109655 NM_006746 ENSG00000047634 SCML1 - Scm polycomb group protein like 1 protein-coding 308.667-20 chrX 70452198 70452500 + 1.16667 NA promoter-TSS (NM_020730) promoter-TSS (NM_020730) 57 NM_020730 1741 Hs.721586 NM_020730 ENSG00000082458 DLG3 MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR discs large MAGUK scaffold protein 3 protein-coding 238.667-12 chr17 73339977 73340345 + 1.16667 NA intron (NM_001144952, intron 44 of 44) AluSq2|SINE|Alu -28160 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 215.167-32 chr8 63417820 63418058 + 1.16667 NA Intergenic Intergenic -47910 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 288-9 chr13 101128215 101128531 + 1.16667 NA intron (NM_001350749, intron 17 of 43) intron (NM_001350749, intron 17 of 43) -184009 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 243-17 chr4 110175639 110176034 + 1.16667 NA intron (NM_001130721, intron 2 of 4) intron (NM_001130721, intron 2 of 4) 22779 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 226.834-5 chr13 99515857 99516164 + 1.16667 NA intron (NM_004800, intron 1 of 16) AluSx|SINE|Alu 14538 NM_004800 9375 Hs.607896 NM_004800 ENSG00000125304 TM9SF2 P76 transmembrane 9 superfamily member 2 protein-coding 330-5 chr10 32693511 32693971 + 1.16667 NA intron (NM_001321115, intron 24 of 43) MER6|DNA|TcMar-Tigger 207731 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 397.667 chr1 112761567 112762397 + 1.16667 NA Intergenic Intergenic 41415 NM_001004440 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 276-22 chr5 89016609 89017167 + 1.16667 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -112783 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 316.5-19 chr3 13973392 13973820 + 1.16667 NA intron (NR_002223, intron 1 of 2) L1PBa|LINE|L1 36299 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 237.334-7 chr16 35137536 35137750 + 1.16667 NA Intergenic Intergenic 32748 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 250.5-5 chr11 8012145 8012807 + 1.16667 NA intron (NR_125366, intron 2 of 2) MER68|LTR|ERVL 4033 NR_125366 103581031 Hs.249366 NR_125366 ENSG00000255420 CASC23 LINC01464 cancer susceptibility 23 ncRNA 328.334-6 chr3 35319090 35319574 + 1.16667 NA intron (NR_110817, intron 1 of 3) intron (NR_110817, intron 1 of 3) 74691 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 249-32 chr8 34258139 34258396 + 1.16667 NA Intergenic MIRc|SINE|MIR -525654 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 176.167-6 chr11 28147880 28148131 + 1.16667 NA intron (NM_001113528, intron 3 of 6) intron (NM_001113528, intron 3 of 6) 39617 NM_152636 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 343.834 chr1 233592476 233592772 + 1.16667 NA Intergenic L1MC|LINE|L1 -21482 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 313-12 chr8 100150057 100150588 + 1.16667 NA promoter-TSS (NM_005034) promoter-TSS (NM_005034) -314 NM_005034 5440 Hs.351475 NM_005034 ENSG00000147669 POLR2K ABC10-alpha|RPABC4|RPB10alpha|RPB12|RPB7.0|hRPB7.0|hsRPB10a RNA polymerase II subunit K protein-coding 285.167-14 chr4 69833623 69833901 + 1.16667 NA Intergenic L2c|LINE|L2 26383 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 429.167-3 chr13 52862324 52862794 + 1.16667 NA Intergenic Intergenic -13919 NM_032949 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 312.501-2 chr14 88189270 88189776 + 1.16667 NA intron (NM_138317, intron 5 of 6) intron (NM_138317, intron 5 of 6) 81388 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 217.334 chr1 197692541 197693013 + 1.16667 NA intron (NR_125340, intron 3 of 19) intron (NR_125340, intron 3 of 19) 82703 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 265.167-11 chr5 87661176 87661517 + 1.16667 NA promoter-TSS (NR_149089) promoter-TSS (NR_149089) -696 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 274.5-24 chr7 7169918 7170301 + 1.16667 NA Intergenic L1MB4|LINE|L1 -12506 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 186.5-26 chr4 109764222 109764450 + 1.16667 NA intron (NM_001331035, intron 3 of 11) MIR|SINE|MIR -34266 NM_030821 81579 Hs.389452 NM_030821 ENSG00000123739 PLA2G12A GXII|PLA2G12|ROSSY phospholipase A2 group XIIA protein-coding 283-2 chr1 162884750 162885148 + 1.16667 NA Intergenic Intergenic -16134 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 262.501-4 chr22 25851402 25851763 + 1.16667 NA intron (NM_001318245, intron 21 of 43) intron (NM_001318245, intron 21 of 43) 109394 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 426.167-12 chr9 126398281 126398918 + 1.16667 NA TTS (NM_001011703) TTS (NM_001011703) 11905 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-coding repressor of NFAT ncRNA 213.667-12 chr15 96544685 96544912 + 1.16667 NA Intergenic Intergenic 211033 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 361.334-5 chr5 111028226 111028583 + 1.16667 NA Intergenic (AGAC)n|Simple_repeat|Simple_repeat -41676 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 421.334 chr19 55385244 55385744 + 1.16667 NA promoter-TSS (NM_001363697) promoter-TSS (NM_001363697) -438 NM_001136134 6158 Hs.652114 NM_000991 ENSG00000108107 RPL28 L28 ribosomal protein L28 protein-coding 287-9 chr14 57703212 57703699 + 1.16667 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 161544 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 236.334-10 chr2 127751707 127751932 + 1.16667 NA intron (NM_001006623, intron 7 of 7) intron (NM_001006623, intron 7 of 7) 50322 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 240.167 chr1 16613349 16613679 + 1.16667 NA promoter-TSS (NM_017940) promoter-TSS (NM_017940) 91 NM_017940 55672 Hs.467587 NM_017940 ENSG00000219481 NBPF1 AB13|AB14|AB23|AD2|NBG|NBPF NBPF member 1 protein-coding 175.833-8 chr10 79356499 79356685 + 1.16667 NA Intergenic Intergenic 9123 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 182.667-40 chr4 118311322 118311520 + 1.16667 NA intron (NM_003619, intron 7 of 12) intron (NM_003619, intron 7 of 12) 32231 NR_002963 677809 Hs.744742 NR_002963 ENSG00000275994 SNORA24 ACA24|SNORA24A small nucleolar RNA, H/ACA box 24 snoRNA 260.667-22 chr19 29840299 29840525 + 1.16667 NA Intergenic Intergenic 28421 NM_001238 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 312.001-2 chr12 59836521 59836852 + 1.16667 NA Intergenic L1MC3|LINE|L1 147316 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 179.001 chr10 93174404 93174595 + 1.16667 NA Intergenic Intergenic 100606 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 167.5-3 chr1 180135854 180136040 + 1.16667 NA Intergenic Intergenic -18886 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 213.334 chr1 31064349 31064542 + 1.16667 NA intron (NM_001020658, intron 1 of 21) intron (NM_001020658, intron 1 of 21) 1272 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 191-34 chr4 31211703 31212080 + 1.16667 NA TTS (NR_125935) TTS (NR_125935) 40747 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 190.834-9 chr4 39571987 39572229 + 1.16667 NA intron (NM_174921, intron 3 of 4) intron (NM_174921, intron 3 of 4) 44269 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 252.001-2 chr12 85017914 85018142 + 1.16667 NA intron (NM_001100917, intron 6 of 8) intron (NM_001100917, intron 6 of 8) 18249 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 330.167-4 chr4 25180577 25181030 + 1.16667 NA intron (NR_037934, intron 1 of 1) intron (NR_037934, intron 1 of 1) 20131 NR_037934 285540 Hs.732278 NR_037934 SEPSECS-AS1 - SEPSECS antisense RNA 1 (head to head) ncRNA 227.334-11 chr18 21540029 21540378 + 1.16667 NA intron (NM_052911, intron 8 of 11) intron (NM_052911, intron 8 of 11) 60501 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 164.167-12 chr11 122502903 122503076 + 1.16667 NA Intergenic Tigger3a|DNA|TcMar-Tigger -80118 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 298-21 chr7 98159740 98160208 + 1.16667 NA intron (NM_014916, intron 6 of 13) intron (NM_014916, intron 6 of 13) -52280 NM_177455 168620 Hs.511979 NM_177455 ENSG00000180535 BHLHA15 BHLHB8|MIST1 basic helix-loop-helix family member a15 protein-coding 286-13 chr3 89572350 89572847 + 1.16667 NA Intergenic L1ME1|LINE|L1 464977 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 215.167-25 chr4 77732206 77732523 + 1.16667 NA intron (NM_001365006, intron 8 of 11) MIRb|SINE|MIR 86700 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 275.667-33 chrX 109455029 109455500 + 1.16667 NA intron (NM_001522, intron 3 of 19) intron (NM_001522, intron 3 of 19) 26822 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 181.667-12 chr12 78596157 78596385 + 1.16667 NA Intergenic Intergenic -236525 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 293.5-17 chr5 32559290 32559831 + 1.16667 NA Intergenic MER34A1|LTR|ERV1 -25997 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 174.167-43 chr8 105324162 105324400 + 1.16667 NA intron (NM_001362837, intron 1 of 7) (TATATC)n|Simple_repeat|Simple_repeat 4738 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 284.167-9 chr2 25522347 25522730 + 1.16667 NA intron (NM_033147, intron 9 of 19) L2a|LINE|L2 127684 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 271.334-13 chr5 33699871 33700204 + 1.16667 NA intron (NM_001324512, intron 3 of 21) L1MD2|LINE|L1 191953 NM_001324512 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 191.333-9 chr11 86360738 86360983 + 1.16667 NA Intergenic Intergenic -13876 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 174.167-44 chr8 105733205 105733413 + 1.16667 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 327194 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 199.167-6 chr16 6188079 6188286 + 1.16667 NA intron (NM_018723, intron 1 of 15) MER8|DNA|TcMar-Tigger 168479 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 217-2 chr11 22374028 22374281 + 1.16667 NA intron (NM_020346, intron 8 of 11) intron (NM_020346, intron 8 of 11) 35773 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 246.001 chr2 67541377 67541587 + 1.16667 NA Intergenic L1PB3|LINE|L1 144149 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 178.834-5 chr2 101402138 101402418 + 1.16667 NA intron (NM_001367510, intron 10 of 10) intron (NM_001367510, intron 10 of 10) -14775 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 229.334 chr11 7093249 7093577 + 1.16667 NA Intergenic Intergenic 4415 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 382.334-4 chr5 36191958 36192466 + 1.16667 NA TTS (NM_153013) TTS (NM_153013) 40101 NM_005983 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 230.833-18 chr8 37996420 37996670 + 1.16667 NA Intergenic Intergenic -29946 NM_000025 155 Hs.2549 NM_000025 ENSG00000188778 ADRB3 BETA3AR adrenoceptor beta 3 protein-coding 204.834-14 chr9 36991829 36992141 + 1.16667 NA intron (NM_001280554, intron 4 of 8) Tigger16a|DNA|TcMar-Tigger 42283 NM_001280553 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 248.833-22 chr6 49054902 49055344 + 1.16667 NA Intergenic Intergenic 408130 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 233.667-8 chr12 79345095 79345359 + 1.16667 NA intron (NM_001291901, intron 7 of 9) MamRep1879|DNA|hAT-Tip100? -74030 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 241.334-2 chr10 76083140 76083413 + 1.16667 NA intron (NM_001305581, intron 5 of 6) MER74A|LTR|ERVL 300515 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 233.167-10 chr17 46917627 46918011 + 1.16667 NA Intergenic FordPrefect|DNA|hAT-Tip100 -5298 NM_001363851 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 179.834-6 chr2 103263126 103263280 + 1.16667 NA Intergenic Intergenic -278774 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 215.667-19 chr18 20938596 20938857 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr 173087 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 217.667-30 chr4 85745344 85745565 + 1.16667 NA intron (NM_001025616, intron 3 of 9) AluJo|SINE|Alu 22986 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 219.833-24 chr7 5366664 5366965 + 1.16667 NA intron (NM_001080495, intron 11 of 29) intron (NM_001080495, intron 11 of 29) 56732 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 230.501-2 chr15 83032993 83033232 + 1.16667 NA intron (NM_001011885, intron 4 of 6) AluJo|SINE|Alu -21473 NM_001160114 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 171.167-37 chr8 98838285 98838591 + 1.16667 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) -12750 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 244.334-7 chr20 59523867 59524345 + 1.16667 NA Intergenic L1MCa|LINE|L1 -53403 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 227.334-6 chr11 109917580 109917916 + 1.16667 NA Intergenic Intergenic -175644 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 265.667-22 chr8 26688893 26689294 + 1.16667 NA Intergenic AluJr|SINE|Alu 110688 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 371.5-9 chr5 127625618 127626182 + 1.16667 NA Intergenic Intergenic -23121 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 339.5-15 chr7 135047185 135047735 + 1.16667 NA intron (NM_001345850, intron 6 of 11) L1MB1|LINE|L1 60952 NR_160299 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 201.5-35 chr8 65158407 65158751 + 1.16667 NA Intergenic MER30|DNA|hAT-Charlie 21761 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 179-24 chr21 29220752 29220929 + 1.16667 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 27346 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 170.5-41 chr7 42199534 42199742 + 1.16667 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 37571 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 260.5-17 chr2 102451796 102452134 + 1.16667 NA exon (NM_003853, exon 12 of 12) exon (NM_003853, exon 12 of 12) 19676 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 169-25 chr19 15577994 15578240 + 1.16667 NA Intergenic Intergenic -37101 NM_007253 11283 Hs.268554 NM_007253 ENSG00000186526 CYP4F8 CPF8|CYPIVF8 cytochrome P450 family 4 subfamily F member 8 protein-coding 202.5-28 chr19 4267238 4267420 + 1.16667 NA intron (NM_018074, intron 6 of 7) L2b|LINE|L2 -11272 NM_020209 56961 Hs.7423 NM_020209 ENSG00000105251 SHD - Src homology 2 domain containing transforming protein D protein-coding 183.167-18 chr2 58584050 58584289 + 1.16667 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 63416 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 173.334-7 chr4 56803584 56803747 + 1.16667 NA Intergenic Intergenic 17808 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 212-33 chr3 30246535 30246819 + 1.16667 NA Intergenic Intergenic -272191 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 304.167-7 chr2 112865757 112866048 + 1.16667 NA Intergenic Intergenic -29123 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 320.167-9 chr2 230235230 230235575 + 1.16667 NA intron (NM_001278453, intron 1 of 23) intron (NM_001278453, intron 1 of 23) 9666 NM_001005176 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 230.334-3 chr2 37832821 37833022 + 1.16667 NA intron (NR_110012, intron 2 of 3) intron (NR_110012, intron 2 of 3) -3210 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 292.501-4 chr5 117076792 117077141 + 1.16667 NA Intergenic L2|LINE|L2 -314757 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 215.167-22 chr4 44755580 44755874 + 1.16667 NA Intergenic L1MB8|LINE|L1 -29093 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 170.667-15 chr17 58352865 58353112 + 1.16667 NA promoter-TSS (NM_003168) promoter-TSS (NM_003168) -787 NM_003168 6827 Hs.439481 NM_003168 ENSG00000213246 SUPT4H1 SPT4|SPT4H|SUPT4H|Supt4a SPT4 homolog, DSIF elongation factor subunit protein-coding 196.667-18 chr15 100061536 100061921 + 1.16667 NA intron (NM_139057, intron 15 of 21) intron (NM_139057, intron 15 of 21) 254705 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 225.834-11 chr4 158772642 158772911 + 1.16667 NA intron (NM_001346043, intron 1 of 15) intron (NM_001346043, intron 1 of 15) 3750 NM_001346043 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 311.834-4 chr15 97637901 97638208 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -77356 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 226-16 chr14 52531305 52531576 + 1.16667 NA intron (NM_020784, intron 6 of 20) L1MC2|LINE|L1 21065 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 299.834-12 chr6 45454513 45454948 + 1.16667 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 32455 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 255.167-29 chr8 109179856 109180207 + 1.16667 NA Intergenic Intergenic 93403 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 275.5-23 chr4 40739202 40739775 + 1.16667 NA Intergenic Intergenic -10467 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 299.333-12 chr2 203150254 203150839 + 1.16667 NA intron (NM_001114132, intron 33 of 54) L1MB5|LINE|L1 -87895 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 196.501 chr1 94805543 94805765 + 1.16667 NA intron (NR_160783, intron 1 of 3) AluJr4|SINE|Alu 14578 NR_160780 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 183.667-36 chr3 32422064 32422373 + 1.16667 NA intron (NM_138410, intron 1 of 4) intron (NM_138410, intron 1 of 4) 30365 NM_138410 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 255.5-31 chr5 143315536 143315922 + 1.16667 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 87554 NM_001364185 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 253.501-2 chr14 60047693 60047932 + 1.16667 NA intron (NR_075071, intron 29 of 32) L1PA11|LINE|L1 -44099 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 253.834-2 chr12 81311120 81311386 + 1.16667 NA intron (NM_001220474, intron 20 of 30) intron (NM_001220474, intron 20 of 30) 32064 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 220.667-37 chr7 44398881 44399331 + 1.16667 NA intron (NM_015332, intron 4 of 5) intron (NM_015332, intron 4 of 5) -73475 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 255.334-5 chr3 127458652 127459220 + 1.16667 NA Intergenic Intergenic -68266 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 224-17 chr15 74317675 74317946 + 1.16667 NA promoter-TSS (NM_001287181) promoter-TSS (NM_001287181) -749 NM_001287181 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 173.5-34 chr2 25622662 25622851 + 1.16667 NA intron (NM_033147, intron 4 of 19) L1MEh|LINE|L1 27466 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 316.167-11 chr2 193653957 193654580 + 1.16667 NA Intergenic L1MC4a|LINE|L1 -690001 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 255.334-4 chr2 187163709 187163991 + 1.16667 NA Intergenic Intergenic 284402 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 201.834-12 chr7 33123462 33123664 + 1.16667 NA Intergenic L1MA2|LINE|L1 -5722 NR_145412 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 306.334 chr1 64903870 64904368 + 1.16667 NA intron (NM_001321852, intron 1 of 24) L2a|LINE|L2 62430 NM_001321857 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 229.667-47 chr9 26061097 26061376 + 1.16667 NA Intergenic Intergenic -5439 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 220.833-2 chr1 156911990 156912346 + 1.16667 NA intron (NM_001080471, intron 15 of 22) intron (NM_001080471, intron 15 of 22) -8464 NM_144702 149499 Hs.491734 NM_144702 ENSG00000160838 LRRC71 C1orf92 leucine rich repeat containing 71 protein-coding 220.167-26 chr6 96469408 96469752 + 1.16667 NA Intergenic Intergenic -52226 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 542.5-5 chr5 18396829 18397732 + 1.16667 NA Intergenic Intergenic 590006 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 217.334-4 chr14 51999188 51999444 + 1.16667 NA intron (NM_016039, intron 4 of 7) Tigger5b|DNA|TcMar-Tigger 9770 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 211.5-5 chr10 7560567 7561062 + 1.16667 NA 3' UTR (NM_030569, exon 14 of 14) 3' UTR (NM_030569, exon 14 of 14) 58859 NM_032817 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 201.5-24 chr2 188264355 188264670 + 1.16667 NA intron (NR_126396, intron 1 of 2) L1MA8|LINE|L1 23179 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 213.834-10 chr5 150920500 150920744 + 1.16667 NA Intergenic L1MDa|LINE|L1 -15639 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 297.167-7 chr21 28632454 28632803 + 1.16667 NA Intergenic Intergenic 93310 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 244.667 chr1 18133913 18134304 + 1.16667 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 26310 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 290.001-3 chr14 52879316 52879730 + 1.16667 NA intron (NM_006832, intron 6 of 14) intron (NM_006832, intron 6 of 14) 71527 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 198-39 chr8 78209159 78209432 + 1.16667 NA Intergenic (AATT)n|Simple_repeat|Simple_repeat -307045 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 246.167-11 chr14 99947051 99947292 + 1.16667 NA Intergenic LTR78|LTR|ERV1 -24251 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 216.167-29 chrX 138193112 138193447 + 1.16667 NA Intergenic L2a|LINE|L2 474514 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 203.334-10 chr8 3966437 3966846 + 1.16667 NA intron (NM_033225, intron 5 of 69) L2c|LINE|L2 1028273 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 423.167-8 chr2 35428369 35429170 + 1.16667 NA Intergenic Intergenic -42636 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 206.5-36 chr2 198498678 198499006 + 1.16667 NA Intergenic Intergenic -123745 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 205.334-11 chr6 67000421 67000676 + 1.16667 NA Intergenic L1MC1|LINE|L1 -1054803 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 235.001-4 chr16 83836762 83837139 + 1.16667 NA Intergenic L1ME3G|LINE|L1 28972 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 175.667-11 chr11 23422774 23423071 + 1.16667 NA Intergenic Intergenic -3732 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 231.001 chr1 201086483 201086749 + 1.16667 NA intron (NM_000069, intron 7 of 43) Tigger3a|DNA|TcMar-Tigger 25810 NM_000069 779 Hs.1294 NM_000069 ENSG00000081248 CACNA1S CACNL1A3|CCHL1A3|Cav1.1|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP calcium voltage-gated channel subunit alpha1 S protein-coding 303.334-18 chr8 135228041 135228452 + 1.16667 NA Intergenic AluSz|SINE|Alu -5885 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 257.5-33 chr9 121278621 121279034 + 1.16667 NA intron (NM_001353064, intron 2 of 19) intron (NM_001353064, intron 2 of 19) 6703 NR_103560 57000 Hs.522373 NM_020250 ENSG00000235865 GSN-AS1 C9orf31|MOST2 GSN antisense RNA 1 ncRNA 205.667-19 chr2 173466232 173466531 + 1.16667 NA Intergenic MIR|SINE|MIR 111509 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 227.833-12 chr21 20562438 20562803 + 1.16667 NA Intergenic Intergenic 240488 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 216.167-2 chr1 194384883 194385157 + 1.16667 NA Intergenic Intergenic 1080275 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 173.167-7 chr10 79608683 79608893 + 1.16667 NA Intergenic Zaphod3|DNA|hAT-Tip100 -2151 NM_005411 653509 Hs.535295 NM_005411 ENSG00000122852 SFTPA1 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 surfactant protein A1 protein-coding 202.833-6 chr12 16200143 16200455 + 1.16667 NA intron (NM_001170798, intron 7 of 8) intron (NM_001170798, intron 7 of 8) 77386 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 178.667-32 chr3 123846991 123847146 + 1.16667 NA intron (NM_001321309, intron 2 of 32) MER2|DNA|TcMar-Tigger 37264 NM_053026 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 177.667 chr1 43465755 43465940 + 1.16667 NA Intergenic LTR33|LTR|ERVL -11858 NM_001190880 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 372.501 chr17 50813082 50813629 + 1.16667 NA Intergenic L2b|LINE|L2 -21229 NM_001330341 124857 Hs.211475 NM_175575 ENSG00000173714 WFIKKN2 GASP-1|WFDC20B|WFIKKNRP|hGASP-1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein-coding 173.167-13 chr12 127711009 127711342 + 1.16667 NA Intergenic Intergenic -55587 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 383.5-7 chr4 99561097 99561726 + 1.16667 NA intron (NM_001134665, intron 1 of 7) intron (NM_001134665, intron 1 of 7) 2312 NM_152292 93587 Hs.380412 NM_152292 ENSG00000145331 TRMT10A HEL-S-88|MSSGM|MSSGM1|RG9MTD2|TRM10 tRNA methyltransferase 10A protein-coding 255.334-2 chr10 108746425 108746690 + 1.16667 NA Intergenic MIRb|SINE|MIR -677264 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 287.667-12 chr18 7613826 7614292 + 1.16667 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 46743 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 210.667-28 chr2 68292396 68292593 + 1.16667 NA TTS (NM_015463) TTS (NM_015463) 27557 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 383.667-10 chr7 151245142 151245598 + 1.16667 NA intron (NM_001003801, intron 2 of 12) CpG 3324 NM_001003801 6604 Hs.647067 NM_003078 ENSG00000082014 SMARCD3 BAF60C|CRACD3|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 204.333-20 chr2 107565007 107565354 + 1.16667 NA Intergenic Intergenic 35761 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 214.833-13 chr3 192212359 192212567 + 1.16667 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -26167 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 267.5-16 chr17 17811956 17812341 + 1.16667 NA TTS (NM_030665) TTS (NM_030665) 1397 NR_106835 102465466 NR_106835 ENSG00000274111 MIR6777 hsa-mir-6777 microRNA 6777 ncRNA 196.5-28 chr3 76845228 76845492 + 1.16667 NA Intergenic Intergenic -194739 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 213.834-3 chr10 116809990 116810174 + 1.16667 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) 17486 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 315.334-5 chr21 26713335 26713806 + 1.16667 NA Intergenic Intergenic 131839 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 192.667-15 chr2 21360155 21360495 + 1.16667 NA Intergenic ERVL-B4-int|LTR|ERVL 236339 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 212-20 chr13 102481027 102481282 + 1.16667 NA Intergenic Intergenic -78711 NM_001321948 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 282.834-11 chr8 79047432 79047708 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL 210041 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 412.167-6 chr9 136728064 136728679 + 1.16667 NA promoter-TSS (NR_024542) promoter-TSS (NR_024542) -187 NR_003672 84973 Hs.495480 NR_003672 ENSG00000233016 SNHG7 NCRNA00061 small nucleolar RNA host gene 7 ncRNA 174-48 chr8 113447207 113447534 + 1.16667 NA Intergenic Intergenic -10431 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 200.167-19 chr3 189527937 189528114 + 1.16667 NA Intergenic Intergenic -68721 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 183.167-38 chr7 123863061 123863526 + 1.16667 NA intron (NM_012269, intron 2 of 4) L2a|LINE|L2 18124 NM_012269 23553 Hs.28673 NM_012269 ENSG00000106302 HYAL4 CSHY|HYAL-4 hyaluronidase 4 protein-coding 235-9 chr12 100916062 100916499 + 1.16667 NA intron (NM_178826, intron 2 of 26) intron (NM_178826, intron 2 of 26) 14634 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 319.167-17 chr9 69898872 69899294 + 1.16667 NA intron (NM_001010940, intron 5 of 5) intron (NM_001010940, intron 5 of 5) 78266 NR_131757 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 214-45 chr5 74919659 74920244 + 1.16667 NA Intergenic AluJo|SINE|Alu -52985 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 297.001-2 chr5 170428806 170429186 + 1.16667 NA intron (NM_001034838, intron 1 of 7) L3|LINE|CR1 39503 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 231.5-33 chr7 47571883 47572144 + 1.16667 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 10098 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 237.834-4 chr2 129260441 129260829 + 1.16667 NA intron (NR_122042, intron 1 of 3) LTR37A|LTR|ERV1 13256 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 278.834-5 chr15 94000163 94000569 + 1.16667 NA intron (NR_120320, intron 3 of 8) intron (NR_120320, intron 3 of 8) 99665 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 275.334-9 chr6 11575452 11575754 + 1.16667 NA 3' UTR (NM_001100829, exon 3 of 3) 3' UTR (NM_001100829, exon 3 of 3) 37854 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 207.834 chr10 4866735 4866943 + 1.16667 NA Intergenic LTR8|LTR|ERV1 40632 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 247.833-17 chr5 64548871 64549142 + 1.16667 NA intron (NM_001029875, intron 2 of 5) MLT1A-int|LTR|ERVL-MaLR -26644 NM_001271890 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 244.334-6 chr2 6016481 6016768 + 1.16667 NA Intergenic L1MB7|LINE|L1 34646 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 174.5-28 chr6 36078633 36078809 + 1.16667 NA intron (NM_001315, intron 8 of 11) intron (NM_001315, intron 8 of 11) 50913 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 201.167-20 chr21 32086912 32087119 + 1.16667 NA promoter-TSS (NR_038033) promoter-TSS (NR_038033) -720 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 233-17 chr3 55247619 55247896 + 1.16667 NA Intergenic Intergenic 69585 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 198.167-25 chr5 65449836 65450024 + 1.16667 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 31990 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 207.667-28 chr3 32603801 32604041 + 1.16667 NA Intergenic MER6|DNA|TcMar-Tigger -32997 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 384.667-10 chr8 101944593 101945052 + 1.16667 NA intron (NM_001040624, intron 3 of 7) LTR33|LTR|ERVL -39610 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 168.5-8 chr10 102670359 102670573 + 1.16667 NA Intergenic MamTip2|DNA|hAT-Tip100 25971 NM_030912 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 281.834-3 chr2 100759557 100759931 + 1.16667 NA Intergenic Intergenic -60395 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 374.001-2 chr17 54965144 54965573 + 1.16667 NA intron (NM_001162861, intron 1 of 3) intron (NM_001162861, intron 1 of 3) 3296 NR_027942 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 190.834-5 chr2 208807799 208808036 + 1.16667 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 265275 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 196.833-22 chr5 97180480 97180821 + 1.16667 NA intron (NM_018343, intron 1 of 9) intron (NM_018343, intron 1 of 9) 2597 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 349.834 chr17 67561815 67562234 + 1.16667 NA intron (NM_181671, intron 4 of 9) intron (NM_181671, intron 4 of 9) -90439 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 245.834 chr11 26153576 26154132 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -35269 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 163.833-43 chr8 97601205 97601502 + 1.16667 NA Intergenic Intergenic -42831 NM_001363137 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 393.334 chr12 116009772 116010229 + 1.16667 NA intron (NM_015335, intron 9 of 30) MER135|DNA|DNA 138654 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 416.834-4 chrX 155216857 155217537 + 1.16667 NA intron (NM_001303545, intron 1 of 5) intron (NM_001303545, intron 1 of 5) 737 NM_003372 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 163.5-49 chr8 37757701 37758057 + 1.16667 NA 3' UTR (NM_001362878, exon 12 of 12) 3' UTR (NM_001362878, exon 12 of 12) -4667 NM_001349349 11212 Hs.304792 NM_007198 ENSG00000147471 PLPBP EPVB6D|PROSC pyridoxal phosphate binding protein protein-coding 216.5-14 chr12 120566528 120566760 + 1.16667 NA intron (NM_014868, intron 12 of 16) AluSz|SINE|Alu 14754 NM_198202 51367 Hs.279913 NM_015918 ENSG00000167272 POP5 HSPC004|RPP2|RPP20|hPop5 POP5 homolog, ribonuclease P/MRP subunit protein-coding 209.334-2 chr10 78917293 78917510 + 1.16667 NA Intergenic Intergenic 150047 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 177.5-48 chr8 94761540 94761929 + 1.16667 NA exon (NM_181787, exon 8 of 19) exon (NM_181787, exon 8 of 19) 41834 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 246.667-13 chr2 41125434 41125687 + 1.16667 NA Intergenic Intergenic -613125 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 224.667-28 chr2 201664551 201664805 + 1.16667 NA intron (NM_033066, intron 13 of 21) L1ME4b|LINE|L1 -21175 NM_001044385 65062 Hs.12319 NM_152388 ENSG00000155755 TMEM237 ALS2CR4|JBTS14 transmembrane protein 237 protein-coding 224.5-35 chr5 42881957 42882197 + 1.16667 NA Intergenic Intergenic -70001 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 335.5-11 chr7 46160836 46161422 + 1.16667 NA Intergenic Intergenic -239857 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 405.334-2 chr17 35377979 35378389 + 1.16667 NA Intergenic L1PB3|LINE|L1 -4563 NM_001104590 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 175.834 chr10 21724821 21724971 + 1.16667 NA intron (NM_001195626, intron 14 of 22) intron (NM_001195626, intron 14 of 22) 190724 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 186.834-5 chr3 47748578 47748762 + 1.16667 NA intron (NM_003074, intron 2 of 27) intron (NM_003074, intron 2 of 27) 33223 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 249-37 chrX 29256143 29256419 + 1.16667 NA intron (NM_014271, intron 2 of 10) intron (NM_014271, intron 2 of 10) -317997 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 322.501-2 chr13 91406881 91407269 + 1.16667 NA intron (NM_004466, intron 1 of 7) intron (NM_004466, intron 1 of 7) 8454 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 234.667-29 chr6 49998037 49998353 + 1.16667 NA Intergenic L1MCa|LINE|L1 23786 NM_001037728 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 170.334 chr12 5071683 5072256 + 1.16667 NA Intergenic MIRb|SINE|MIR 28090 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 173.834-3 chr10 89301813 89302018 + 1.16667 NA promoter-TSS (NM_001547) promoter-TSS (NM_001547) -131 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 202.334-6 chr2 40488140 40488499 + 1.16667 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 24116 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 171.667-62 chr9 102156059 102156270 + 1.16667 NA Intergenic L1MA9|LINE|L1 -363473 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 220.334-7 chr6 27608820 27609415 + 1.16667 NA Intergenic LTR41|LTR|ERVL -84918 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 218.167-24 chr8 83222655 83222953 + 1.16667 NA Intergenic L1PA16|LINE|L1 -180954 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 407.834-5 chr20 45144224 45144636 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -19965 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 203.667-37 chr5 79641736 79642021 + 1.16667 NA intron (NM_001349548, intron 8 of 16) Tigger4a|DNA|TcMar-Tigger 29437 NM_001349551 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 283-11 chr21 28254102 28254409 + 1.16667 NA Intergenic Intergenic -25588 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 314.834 chr19 39766321 39766652 + 1.16667 NA Intergenic Intergenic -10108 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 232.833-20 chr20 21402365 21402705 + 1.16667 NA Intergenic Intergenic -5009 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 202.334-7 chr2 152735639 152735825 + 1.16667 NA intron (NR_146431, intron 3 of 3) intron (NR_146431, intron 3 of 3) 17095 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 280.501-3 chr16 85297131 85297453 + 1.16667 NA Intergenic Intergenic 9033 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 163.334-9 chr7 38088917 38089132 + 1.16667 NA Intergenic L1M4|LINE|L1 -89221 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 200.834-10 chr8 141733817 141734030 + 1.16667 NA Intergenic Intergenic 52390 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 206.001 chr4 66628363 66628557 + 1.16667 NA Intergenic Intergenic 351636 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 220-9 chr13 110109118 110109342 + 1.16667 NA Intergenic Intergenic -12472 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 308.834-3 chr13 113220326 113220603 + 1.16667 NA intron (NM_001354942, intron 3 of 19) intron (NM_001354942, intron 3 of 19) 10851 NM_001354940 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 204.167 chr10 60280896 60281136 + 1.16667 NA intron (NM_001204403, intron 2 of 43) MamTip3|DNA|hAT-Tip100 108859 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 261.501-2 chr2 36982558 36982817 + 1.16667 NA intron (NM_019024, intron 35 of 35) L2a|LINE|L2 -16151 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 268-6 chr1 201995466 201995794 + 1.16667 NA intron (NM_020216, intron 3 of 10) AluJb|SINE|Alu -7494 NR_106798 102465443 NR_106798 ENSG00000275207 MIR6740 hsa-mir-6740 microRNA 6740 ncRNA 350.333-4 chr15 83740896 83741320 + 1.16667 NA intron (NM_207517, intron 3 of 29) L1MEg|LINE|L1 86985 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 208.834-2 chr16 88544793 88545040 + 1.16667 NA Intergenic AluY|SINE|Alu -13863 NR_148997 100128882 Hs.722546 NR_148997 ENSG00000261744 LOC100128882 - uncharacterized LOC100128882 ncRNA 327.5-17 chr22 47337220 47337766 + 1.16667 NA Intergenic LTR33B|LTR|ERVL -8078 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 203.5-44 chr9 36449859 36450296 + 1.16667 NA Intergenic L1MB4|LINE|L1 -48879 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 298.334-7 chr6 36005486 36005754 + 1.16667 NA intron (NM_001193476, intron 3 of 19) L1MC4a|LINE|L1 18880 NM_138718 116369 Hs.435836 NM_052961 ENSG00000112053 SLC26A8 SPGF3|TAT1 solute carrier family 26 member 8 protein-coding 240-27 chr18 11041743 11042072 + 1.16667 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 106855 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 485.501-2 chr3 125140003 125140518 + 1.16667 NA intron (NM_001195483, intron 4 of 12) MIRb|SINE|MIR 11292 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 209.5-16 chr15 57993016 57993343 + 1.16667 NA intron (NM_170696, intron 5 of 11) intron (NM_170696, intron 5 of 11) 20844 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 234-34 chr7 32135533 32135855 + 1.16667 NA intron (NM_001322059, intron 3 of 17) L1MA9|LINE|L1 -64258 NM_001322055 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 188.834-4 chr12 92058357 92058709 + 1.16667 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 83180 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 192.167-16 chr17 27166569 27166852 + 1.16667 NA Intergenic ALR/Alpha|Satellite|centr -77469 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 206.667-47 chr7 41162887 41163201 + 1.16667 NA Intergenic Intergenic 61440 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 252.834-6 chr3 187713537 187713916 + 1.16667 NA intron (NR_034062, intron 1 of 2) MER51A|LTR|ERV1 -11169 NM_001004312 344892 Hs.567872 NM_001004312 ENSG00000198471 RTP2 Z3CXXC2 receptor transporter protein 2 protein-coding 379.501-2 chr4 158042674 158043055 + 1.16667 NA Intergenic L1PA16|LINE|L1 -127888 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 293.667-4 chr12 17463085 17463389 + 1.16667 NA Intergenic Intergenic 125841 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 185-35 chr3 81020411 81020640 + 1.16667 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 26657 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 283.667-7 chr21 26160200 26160596 + 1.16667 NA intron (NM_001136131, intron 1 of 15) intron (NM_001136131, intron 1 of 15) 10372 NM_001204303 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 398.5-5 chr19 12793567 12794218 + 1.16667 NA TTS (NM_002229) TTS (NM_002229) 2406 NM_002229 3726 Hs.25292 NM_002229 ENSG00000171223 JUNB AP-1 JunB proto-oncogene, AP-1 transcription factor subunit protein-coding 283.5-4 chr15 24712047 24712474 + 1.16667 NA Intergenic MER34-int|LTR|ERV1 36866 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 267.5-17 chr17 42805034 42805375 + 1.16667 NA intron (NM_173478, intron 3 of 6) L2c|LINE|L2 6343 NM_173478 124817 Hs.12272 NM_173478 ENSG00000176563 CNTD1 CNTD|COSA1 cyclin N-terminal domain containing 1 protein-coding 368-4 chr20 1325280 1325780 + 1.16667 NA non-coding (NR_040047, exon 1 of 3) non-coding (NR_040047, exon 1 of 3) 187 NR_040047 100507495 Hs.655785 NR_040047 ENSG00000234684 SDCBP2-AS1 - SDCBP2 antisense RNA 1 ncRNA 271.167-7 chr15 75638244 75638508 + 1.16667 NA TTS (NM_018285) TTS (NM_018285) 1947 NM_018285 55272 Hs.513043 NM_018285 ENSG00000177971 IMP3 BRMS2|C15orf12|MRPS4 IMP U3 small nucleolar ribonucleoprotein 3 protein-coding 364.167-2 chr12 15896087 15896515 + 1.16667 NA intron (NM_007178, intron 6 of 9) intron (NM_007178, intron 6 of 9) 13914 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 310.167-5 chr2 68174238 68174542 + 1.16667 NA intron (NM_020143, intron 6 of 6) MER2|DNA|TcMar-Tigger 16502 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 169.334-5 chr15 96810462 96810811 + 1.16667 NA Intergenic L1MEg|LINE|L1 27201 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 261.5-10 chr10 28217617 28217996 + 1.16667 NA intron (NR_134517, intron 2 of 16) intron (NR_134517, intron 2 of 16) 64317 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 254-27 chr8 98825995 98826413 + 1.16667 NA promoter-TSS (NM_001256313) promoter-TSS (NM_001256313) -516 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 230.333-12 chr16 13818988 13819393 + 1.16667 NA Intergenic Intergenic -100967 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 336.334 chr10 77317834 77318322 + 1.16667 NA intron (NM_001322838, intron 1 of 29) MIRb|SINE|MIR 32683 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 339.167-9 chr3 37974579 37975256 + 1.16667 NA intron (NM_001008392, intron 6 of 7) L2b|LINE|L2 5513 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 278.834-15 chr8 84095238 84095540 + 1.16667 NA Intergenic LTR40a|LTR|ERVL -87398 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 189.334-2 chr10 63477374 63477580 + 1.16667 NA intron (NM_001322258, intron 1 of 24) L1ME1|LINE|L1 -11500 NM_001322252 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 292.5-19 chr7 22855643 22856283 + 1.16667 NA promoter-TSS (NR_003075) promoter-TSS (NR_003075) -650 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 202.5-52 chr8 137257657 137257865 + 1.16667 NA Intergenic Intergenic 155827 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 165.667-14 chr12 65755503 65755788 + 1.16667 NA Intergenic Intergenic -68815 NM_001330190 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 482.334-2 chr7 33108562 33109221 + 1.16667 NA intron (NM_203288, intron 1 of 5) intron (NM_203288, intron 1 of 5) 513 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 279.167-9 chr2 73391557 73392066 + 1.16667 NA intron (NM_015120, intron 1 of 22) L1M5|LINE|L1 6053 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 201.5-27 chr3 35956373 35956728 + 1.16667 NA Intergenic Intergenic 212074 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 206.667-36 chr3 46171255 46171481 + 1.16667 NA Intergenic L1MD2|LINE|L1 36945 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 274.334-3 chr11 35019165 35019430 + 1.16667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 77460 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 163.333-54 chr7 17275958 17276286 + 1.16667 NA Intergenic Intergenic -22530 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 187.834-10 chr5 141814021 141814279 + 1.16667 NA Intergenic Intergenic 52052 NM_001278615 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 186.334-7 chr4 39236071 39236354 + 1.16667 NA intron (NM_025132, intron 20 of 36) L1PB4|LINE|L1 53683 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 287.167 chr1 40651507 40651880 + 1.16667 NA intron (NM_014747, intron 1 of 7) L2b|LINE|L2 13989 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 369.668 chr11 1882382 1882720 + 1.16667 NA intron (NM_001013254, intron 3 of 10) intron (NM_001013254, intron 3 of 10) 2506 NR_107001 102465993 NR_107001 ENSG00000284594 MIR7847 hsa-mir-7847 microRNA 7847 ncRNA 217.333-34 chr5 148124861 148125121 + 1.16667 NA TTS (NM_001127699) TTS (NM_001127699) -43555 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 329.334-6 chr7 42939737 42940092 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 7538 NR_156497 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 380.501-2 chr6 12232594 12233042 + 1.16667 NA Intergenic Intergenic -57543 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 210.667-42 chr6 94214948 94215272 + 1.16667 NA Intergenic Intergenic 496807 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 210.834-5 chr15 51774304 51774590 + 1.16667 NA intron (NM_001142885, intron 4 of 8) L1ME4b|LINE|L1 22850 NM_014548 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 171.667-4 chr1 174431058 174431300 + 1.16667 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -16785 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 181.167-9 chr10 97699355 97699571 + 1.16667 NA Intergenic ERVL-E-int|LTR|ERVL -12222 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 294.501-2 chr4 118222585 118223070 + 1.16667 NA intron (NM_004784, intron 6 of 13) intron (NM_004784, intron 6 of 13) -55935 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 363.334 chr10 34276360 34276722 + 1.16667 NA intron (NM_001184789, intron 19 of 22) intron (NM_001184789, intron 19 of 22) -503861 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 270.834-2 chr15 73975087 73975439 + 1.16667 NA Intergenic LTR54|LTR|ERV1 17032 NM_004809 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 224.501 chr5 73708182 73708712 + 1.16667 NA intron (NM_001177693, intron 2 of 35) L1PA16|LINE|L1 82289 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 241-28 chr5 147372117 147372844 + 1.16667 NA intron (NM_001112724, intron 9 of 12) intron (NM_001112724, intron 9 of 12) 81212 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 254.334 chr10 122560670 122561188 + 1.16667 NA intron (NM_004406, intron 1 of 39) intron (NM_004406, intron 1 of 39) 175 NM_001320644 1755 Hs.279611 NM_004406 ENSG00000187908 DMBT1 GP340|SAG|SALSA|muclin deleted in malignant brain tumors 1 protein-coding 236.833-17 chr3 161639103 161639404 + 1.16667 NA Intergenic L1PA8|LINE|L1 142445 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 251.667-28 chr4 88798952 88799201 + 1.16667 NA intron (NM_001265578, intron 1 of 16) intron (NM_001265578, intron 1 of 16) 24285 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 213.834-8 chr4 180810835 180811048 + 1.16667 NA Intergenic Intergenic 348208 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 201.667-57 chrX 73491557 73491814 + 1.16667 NA Intergenic L1PA11|LINE|L1 44431 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 185-33 chr20 806079 806268 + 1.16667 NA Intergenic MER4-int|LTR|ERV1 -27542 NM_001289145 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 336.5-13 chr8 107277393 107277926 + 1.16667 NA intron (NM_001199859, intron 7 of 8) L1MC4|LINE|L1 58856 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 186.334-5 chr19 46034511 46034738 + 1.16667 NA Intergenic AluJb|SINE|Alu 6392 NM_001002923 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 322.667-18 chr3 111782959 111783374 + 1.16667 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 50670 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 195.834-3 chr10 52240296 52240624 + 1.16667 NA intron (NM_001098512, intron 9 of 17) L1MC3|LINE|L1 73668 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 283.834-3 chr17 73493786 73494146 + 1.16667 NA intron (NM_001144952, intron 2 of 44) intron (NM_001144952, intron 2 of 44) -19717 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 290.5-20 chr4 89170214 89170587 + 1.16667 NA Intergenic Intergenic 57583 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 251.667-15 chr16 9630461 9630950 + 1.16667 NA Intergenic Intergenic -175200 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 400.667-6 chr20 9417378 9418240 + 1.16667 NA intron (NM_000933, intron 21 of 35) L1MB7|LINE|L1 -96549 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 301.833-9 chr4 31403666 31404191 + 1.16667 NA Intergenic Intergenic -102616 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 218.333-24 chr6 152749083 152749437 + 1.16667 NA Intergenic Intergenic -1537 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 182.667-43 chr6 66956440 66956685 + 1.16667 NA Intergenic Intergenic -1098789 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 609.667 chr11 111776885 111777967 + 1.16667 NA Intergenic Intergenic -11037 NM_002716 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 255.167-12 chr13 50745842 50746355 + 1.16667 NA intron (NM_198989, intron 1 of 1) MIR|SINE|MIR -61757 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 235.167-16 chr18 4006412 4006794 + 1.16667 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 44250 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 286.167-22 chr9 4749938 4750243 + 1.16667 NA Intergenic L1M8|LINE|L1 -8047 NM_001199853 50808 Hs.732022 NM_016282 ENSG00000147853 AK3 AK3L1|AK6|AKL3L|AKL3L1|FIX adenylate kinase 3 protein-coding 282.667-7 chr11 32833866 32834148 + 1.16667 NA intron (NM_024081, intron 2 of 5) L2a|LINE|L2 4080 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 300.334-5 chr15 27409499 27409864 + 1.16667 NA intron (NM_001270873, intron 5 of 5) L1M4|LINE|L1 -248362 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 278.501-2 chr22 22832092 22832459 + 1.16667 NA Intergenic Intergenic 9499 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 171.834-8 chr9 27970953 27971195 + 1.16667 NA intron (NM_001354574, intron 5 of 5) MIRb|SINE|MIR -397208 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 271.667-27 chr9 133347503 133347756 + 1.16667 NA promoter-TSS (NM_000972).2 promoter-TSS (NM_000972).2 502 NM_133640 6837 Hs.78354 NM_006752 ENSG00000148297 MED22 MED24|SRB6|SURF5|surf-5 mediator complex subunit 22 protein-coding 188.5-40 chr6 94072115 94072289 + 1.16667 NA Intergenic Intergenic 353899 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 202.5-15 chr12 33518784 33519071 + 1.16667 NA Intergenic Intergenic -79108 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 211.833-20 chr7 43453810 43454274 + 1.16667 NA intron (NM_015052, intron 12 of 29) intron (NM_015052, intron 12 of 29) 68500 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 344-3 chr1 151530006 151530487 + 1.16667 NA intron (NM_020770, intron 12 of 20) intron (NM_020770, intron 12 of 20) -10063 NM_001126337 7286 Hs.489922 NM_020127 ENSG00000143367 TUFT1 - tuftelin 1 protein-coding 168-3 chr1 76145851 76146184 + 1.16667 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 71271 NM_001349106 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 266.667-22 chr7 94398902 94399201 + 1.16667 NA exon (NM_000089, exon 4 of 52) exon (NM_000089, exon 4 of 52) 4490 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 305.167-12 chr7 22501167 22501545 + 1.16667 NA Intergenic Intergenic -1074 NM_207342 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 255.167 chr1 17239447 17239871 + 1.16667 NA intron (NM_013358, intron 13 of 15).2 intron (NM_013358, intron 13 of 15).2 -9439 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3|UHS1 peptidyl arginine deiminase 3 protein-coding 210.667-11 chr12 54283202 54283496 + 1.16667 NA intron (NM_031157, intron 8 of 10) intron (NM_031157, intron 8 of 10) 2623 NM_031157 3178 Hs.546261 NM_002136 ENSG00000135486 HNRNPA1 ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 heterogeneous nuclear ribonucleoprotein A1 protein-coding 209-28 chr4 94182991 94183188 + 1.16667 NA intron (NR_125922, intron 1 of 8) L1MB7|LINE|L1 24467 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 437.834-3 chr5 72248161 72248618 + 1.16667 NA intron (NM_001286748, intron 4 of 11) intron (NM_001286748, intron 4 of 11) 68602 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 402.167-8 chr3 62786373 62786811 + 1.16667 NA intron (NM_003716, intron 1 of 29) AluJr4|SINE|Alu 88824 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 241.667-3 chr10 25945800 25946104 + 1.16667 NA intron (NM_001368265, intron 2 of 7) L1MB3|LINE|L1 11723 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 326.667-4 chr2 58343366 58343993 + 1.16667 NA Intergenic L1MA4A|LINE|L1 67802 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 258-11 chr15 63546000 63546305 + 1.16667 NA intron (NM_006537, intron 3 of 14) intron (NM_006537, intron 3 of 14) 41559 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 265.667-7 chr11 59854807 59855088 + 1.16667 NA intron (NM_001062, intron 6 of 8) intron (NM_001062, intron 6 of 8) -9448 NM_005142 2694 Hs.110014 NM_005142 ENSG00000134812 CBLIF GIF|IF|IFMH|INF|TCN3 cobalamin binding intrinsic factor protein-coding 365.5-14 chr9 19307950 19308467 + 1.16667 NA intron (NR_073201, intron 10 of 31) L1MEd|LINE|L1 72028 NM_001010 6194 Hs.408073 NM_001010 ENSG00000137154 RPS6 S6 ribosomal protein S6 protein-coding 181.334-9 chr5 141181649 141181945 + 1.16667 NA 5' UTR (NM_020957, exon 1 of 1) 5' UTR (NM_020957, exon 1 of 1) 107 NM_020957 57717 Hs.147674 NM_020957 ENSG00000272674 PCDHB16 ME1|PCDH-BETA16|PCDH3X|PCDHB8a protocadherin beta 16 protein-coding 315.667-11 chr2 121980852 121981174 + 1.16667 NA Intergenic AluSx1|SINE|Alu 225362 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 435.167-6 chr7 52578174 52578749 + 1.16667 NA Intergenic L1M4|LINE|L1 -457172 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 226.334-7 chr5 174581629 174581887 + 1.16667 NA Intergenic Intergenic -142824 NM_001363626 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 401.334-4 chrX 20688312 20688691 + 1.16667 NA Intergenic L1MA2|LINE|L1 -421592 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 362.167-10 chr2 79198363 79198980 + 1.16667 NA Intergenic Intergenic -38918 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 309.834-3 chr13 113394115 113394620 + 1.16667 NA Intergenic Intergenic 20026 NM_001304433 101928841 Hs.646609 NM_001003399 LOC101928841 - collagen alpha-1(II) chain-like protein-coding 275.5-16 chr2 210698285 210698624 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR 80883 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 219.334-7 chr2 67620601 67620861 + 1.16667 NA Intergenic Intergenic 204831 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 244.167-8 chr12 71072000 71072321 + 1.16667 NA Intergenic Intergenic 85649 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 254.334-7 chr6 35731549 35731929 + 1.16667 NA intron (NR_027117, intron 5 of 9) CpG-23543 -3156 NM_001145775 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 218.001 chr12 32423652 32424023 + 1.16667 NA intron (NM_001370298, intron 1 of 16) MER41B|LTR|ERV1 24279 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 167.667-9 chr15 58477074 58477243 + 1.16667 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 21577 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 346.167-6 chr16 74163363 74163969 + 1.16667 NA Intergenic L1MEc|LINE|L1 51855 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 201-29 chr3 62052867 62053076 + 1.16667 NA intron (NM_002841, intron 4 of 29) intron (NM_002841, intron 4 of 29) 265976 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 201-21 chr2 98721076 98721424 + 1.16667 NA intron (NM_012214, intron 2 of 15) L1M4b|LINE|L1 9882 NM_012214 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 246.667-21 chr6 110547465 110547872 + 1.16667 NA Intergenic Intergenic -71055 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 178.667-20 chr18 35439778 35440025 + 1.16667 NA Intergenic Intergenic 57707 NM_001308064 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 175.5-22 chr15 39364350 39364670 + 1.16667 NA Intergenic Intergenic 113841 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 243.334 chr1 46036854 46037199 + 1.16667 NA TTS (NM_015112) TTS (NM_015112) 93647 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 410.834 chr10 104329887 104330302 + 1.16667 NA intron (NM_001272013, intron 1 of 1) intron (NM_001272013, intron 1 of 1) -1102 NM_001272012 85450 Hs.523252 NM_033397 ENSG00000148841 ITPRIP DANGER|KIAA1754|bA127L20|bA127L20.2 inositol 1,4,5-trisphosphate receptor interacting protein protein-coding 217.167-7 chr10 80926445 80926696 + 1.16667 NA Intergenic Intergenic 276773 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 242.834 chr1 20492017 20492369 + 1.16667 NA Intergenic Charlie4z|DNA|hAT-Charlie -5983 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 212.667-12 chr14 102314328 102314619 + 1.16667 NA Intergenic CpG -2904 NM_001267827 55778 Hs.743359 NM_018335 ENSG00000022976 ZNF839 C14orf131 zinc finger protein 839 protein-coding 185.667-19 chr14 65283230 65283476 + 1.16667 NA Intergenic Intergenic 51830 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 248.167-9 chr17 58779590 58779858 + 1.16667 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 23855 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 212.667-47 chr7 100703545 100703763 + 1.16667 NA Intergenic Intergenic -2467 NM_005837 10248 Hs.416994 NM_005837 ENSG00000172336 POP7 0610037N12Rik|RPP2|RPP20 POP7 homolog, ribonuclease P/MRP subunit protein-coding 199.834-2 chr12 38767062 38767369 + 1.16667 NA intron (NM_153634, intron 8 of 19) intron (NM_153634, intron 8 of 19) 138376 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 223-23 chr2 57215117 57215386 + 1.16667 NA Intergenic L1MA7|LINE|L1 -692400 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 175-54 chr8 79446870 79447153 + 1.16667 NA Intergenic Intergenic 114823 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 366.001-2 chr8 97514337 97514664 + 1.16667 NA Intergenic Intergenic -68003 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 231.167-4 chr1 152344721 152345221 + 1.16667 NA intron (NR_103779, intron 2 of 2) intron (NR_103779, intron 2 of 2) 7903 NR_103779 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 525.167 chr1 7117391 7118145 + 1.16667 NA intron (NM_001349608, intron 3 of 21) intron (NM_001349608, intron 3 of 21) 271986 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 183.334-4 chr13 48000760 48001416 + 1.16667 NA intron (NM_003850, intron 1 of 10) CpG 238 NM_003850 8803 Hs.743361 NM_003850 ENSG00000136143 SUCLA2 A-BETA|A-SCS|MTDPS5|SCS-betaA succinate-CoA ligase ADP-forming beta subunit protein-coding 222.167-29 chr4 18653215 18653460 + 1.16667 NA Intergenic Intergenic -631462 NR_158565 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 324.667-11 chr17 58998580 58999086 + 1.16667 NA non-coding (NR_148347, exon 23 of 23) non-coding (NR_148347, exon 23 of 23) 108047 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 192.834-2 chr5 66986910 66987140 + 1.16667 NA TTS (NM_198828) TTS (NM_198828) 17129 NR_111908 101928794 Hs.672435 NR_111908 MAST4-AS1 - MAST4 antisense RNA 1 ncRNA 324.668 chr11 60687571 60687975 + 1.16667 NA TTS (NR_026946) TTS (NR_026946) -11839 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 506.167-4 chr6 162396618 162397465 + 1.16667 NA intron (NM_004562, intron 2 of 11) MLT1K|LTR|ERVL-MaLR -330091 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 180.667-21 chr16 63452393 63452674 + 1.16667 NA Intergenic Tigger4|DNA|TcMar-Tigger -1416095 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 188.334-2 chr12 117890825 117891022 + 1.16667 NA intron (NM_173598, intron 1 of 19) intron (NM_173598, intron 1 of 19) 78067 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 311.167-12 chr7 42407431 42407851 + 1.16667 NA Intergenic MIRc|SINE|MIR -170432 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 180.167-11 chr19 6559591 6559802 + 1.16667 NA Intergenic AluYm1|SINE|Alu 28670 NM_003811 8744 Hs.1524 NM_003811 ENSG00000125657 TNFSF9 4-1BB-L|CD137L|TNLG5A TNF superfamily member 9 protein-coding 583.667-4 chr15 89356045 89356904 + 1.16667 NA Intergenic AluSc|SINE|Alu -5105 NR_133001 254559 Hs.136313 NR_015411 ENSG00000255571 MIR9-3HG LINC00925 MIR9-3 host gene ncRNA 353.834-6 chr3 105289374 105289786 + 1.16667 NA Intergenic L1M5|LINE|L1 -77133 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 307.834-11 chr7 11253919 11254378 + 1.16667 NA Intergenic AluSx3|SINE|Alu 280276 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 216.167-12 chr11 128075360 128075967 + 1.16667 NA Intergenic L1MEd|LINE|L1 -133103 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 230.667-9 chr15 38365968 38366333 + 1.16667 NA Intergenic MER31B|LTR|ERV1 -87977 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 275.5-14 chr2 64865463 64865760 + 1.16667 NA Intergenic Intergenic -1980 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 370.5-11 chr6 131664267 131664789 + 1.16667 NA intron (NR_133007, intron 6 of 23) Tigger3b|DNA|TcMar-Tigger 27226 NM_005021 5169 Hs.486489 NM_005021 ENSG00000154269 ENPP3 B10|CD203c|NPP3|PD-IBETA|PDNP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 protein-coding 241.167-15 chr2 39481788 39482070 + 1.16667 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 44513 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 216.834-8 chr3 99868051 99868297 + 1.16667 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) 7999 NM_001370247 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 440.334-6 chr8 42210531 42211034 + 1.16667 NA Intergenic MER1A|DNA|hAT-Charlie -3217 NM_001319189 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 170.167-6 chr1 240721566 240721970 + 1.16667 NA Intergenic AluJr|SINE|Alu -109613 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 169.167-16 chr2 70867108 70867360 + 1.16667 NA Intergenic Intergenic -20637 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 289.667-6 chr12 12357160 12357905 + 1.16667 NA promoter-TSS (NR_024061) promoter-TSS (NR_024061) 454 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 163.833-5 chr11 70373550 70373862 + 1.16667 NA intron (NR_045286, intron 24 of 28) MIR|SINE|MIR -24800 NM_138565 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 184.334-4 chr22 29913958 29914183 + 1.16667 NA intron (NM_153051, intron 1 of 18) L1ME1|LINE|L1 30896 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 220.667-5 chr10 10471629 10472010 + 1.16667 NA intron (NM_001326317, intron 1 of 14) L1ME2|LINE|L1 9269 NM_001326318 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 244.5-24 chr22 27145498 27146016 + 1.16667 NA Intergenic AluSq2|SINE|Alu -41759 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 180.334 chr12 30577035 30577389 + 1.16667 NA Intergenic L2a|LINE|L2 100032 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 288.001-2 chr15 94319761 94320032 + 1.16667 NA intron (NM_018349, intron 3 of 21) intron (NM_018349, intron 3 of 21) 21695 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 316.334-8 chr21 42309637 42310049 + 1.16667 NA Intergenic MER90a|LTR|ERV1 5753 NM_003226 7033 Hs.82961 NM_003226 ENSG00000160180 TFF3 ITF|P1B|TFI trefoil factor 3 protein-coding 172-43 chr6 9413197 9413406 + 1.16667 NA Intergenic Intergenic 761092 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 354.667-4 chr15 60358927 60359641 + 1.16667 NA intron (NM_001002857, intron 6 of 13) intron (NM_001002857, intron 6 of 13) 38702 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 269.001-2 chr3 4314430 4314836 + 1.16667 NA TTS (NM_001276325) TTS (NM_001276325) 11329 NM_006515 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 241.834-4 chr11 97765654 97765955 + 1.16667 NA Intergenic AluSz6|SINE|Alu -1255145 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 347.5-11 chr3 156538416 156538883 + 1.16667 NA TTS (NM_001308205) TTS (NM_001308205) 15476 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 174.167-13 chr17 34704064 34704272 + 1.16667 NA Intergenic Intergenic 123419 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 170-36 chr3 65342088 65342322 + 1.16667 NA Intergenic L2|LINE|L2 -551611 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 264.501-3 chr6 46784755 46785231 + 1.16667 NA Intergenic Intergenic -8396 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 284.167-7 chr12 64814971 64815434 + 1.16667 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) -9445 NM_001364838 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 233.167-22 chr7 41996724 41997165 + 1.16667 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 240265 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 164-30 chr2 13720892 13721092 + 1.16667 NA Intergenic L1P1|LINE|L1 679966 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 266-17 chr4 52099934 52100341 + 1.16667 NA Intergenic Intergenic 48833 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 215.833-2 chr1 116271926 116272281 + 1.16667 NA Intergenic L3|LINE|CR1 -101141 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 174.334-5 chr2 218685273 218685526 + 1.16667 NA intron (NM_001369423, intron 11 of 26) MER113|DNA|hAT-Charlie 13081 NM_001369423 27148 Hs.471404 NM_015690 ENSG00000163482 STK36 FU serine/threonine kinase 36 protein-coding 180.167-5 chr10 90968832 90969068 + 1.16667 NA intron (NR_131214, intron 3 of 5) MamRep605|LTR?|LTR? 21650 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 255.667-16 chr7 98419126 98419401 + 1.16667 NA Intergenic Intergenic -18173 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 290.334-14 chr8 129310286 129310867 + 1.16667 NA Intergenic L1ME2|LINE|L1 -69336 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 163.5 chr1 15894310 15894497 + 1.16667 NA intron (NM_015001, intron 3 of 14) intron (NM_015001, intron 3 of 14) -46256 NR_024279 729614 Hs.119298 NR_024279 ENSG00000179743 FLJ37453 - uncharacterized LOC729614 ncRNA 438.168 chr15 55838625 55839026 + 1.16667 NA intron (NM_198400, intron 14 of 21) intron (NM_198400, intron 14 of 21) 78306 NM_001284340 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 226.667-18 chr17 69942538 69942878 + 1.16667 NA Intergenic Intergenic -18999 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 180-35 chr2 61515303 61515532 + 1.16667 NA intron (NM_003400, intron 4 of 24) intron (NM_003400, intron 4 of 24) 22939 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 214.001-2 chr19 48319895 48320200 + 1.16667 NA promoter-TSS (NM_144577) promoter-TSS (NM_144577) -548 NM_144577 93233 Hs.112645 NM_144577 ENSG00000105479 CCDC114 CILD20 coiled-coil domain containing 114 protein-coding 521.334-3 chr2 139031610 139032239 + 1.16667 NA Intergenic L1M2a|LINE|L1 134600 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 232.334-12 chr6 96542492 96542853 + 1.16667 NA intron (NM_015323, intron 11 of 18) intron (NM_015323, intron 11 of 18) -19853 NM_001170807 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 206-7 chr12 8996490 8996812 + 1.16667 NA intron (NM_005810, intron 3 of 4) intron (NM_005810, intron 3 of 4) 7026 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 230.833-5 chr12 38711932 38712319 + 1.16667 NA intron (NM_153634, intron 13 of 19) intron (NM_153634, intron 13 of 19) 193466 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 165.834-5 chr16 8565414 8565826 + 1.16667 NA intron (NR_110736, intron 2 of 3) intron (NR_110736, intron 2 of 3) 24218 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 172.833-23 chr4 126452664 126452919 + 1.16667 NA Intergenic Intergenic 945532 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 205.334-9 chr21 27159810 27160025 + 1.16667 NA Intergenic Intergenic -192829 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 184.334-7 chr7 54997901 54998162 + 1.16667 NA Intergenic Intergenic -20986 NM_005228 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 376.334 chr12 74488319 74488858 + 1.16667 NA Intergenic L1PA15|LINE|L1 -49247 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 309.667-9 chr18 50045694 50046006 + 1.16667 NA intron (NM_001080467, intron 2 of 39) intron (NM_001080467, intron 2 of 39) 80713 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 352.167 chr14 60286494 60287362 + 1.16667 NA 3' UTR (NM_177951, exon 4 of 4) 3' UTR (NM_177951, exon 4 of 4) -36268 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 191-15 chr12 127130057 127130234 + 1.16667 NA Intergenic Intergenic -69748 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 173.667-12 chr11 118436309 118436592 + 1.16667 NA promoter-TSS (NM_001197104) promoter-TSS (NM_001197104) -40 NM_001197104 4297 Hs.258855 NM_005933 ENSG00000118058 KMT2A ALL-1|CXXC7|HRX|HTRX1|MLL|MLL1|MLL1A|TRX1|WDSTS lysine methyltransferase 2A protein-coding 212.667-40 chr5 104120703 104120946 + 1.16667 NA Intergenic Intergenic -558035 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 361.834 chr10 4766870 4767648 + 1.16667 NA Intergenic Intergenic -58918 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 182.333-11 chr17 77002194 77002504 + 1.16667 NA Intergenic Intergenic -33150 NR_136417 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 167.334-7 chr4 64498028 64498334 + 1.16667 NA Intergenic L1MC4|LINE|L1 -88721 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 303-18 chr5 150738731 150739258 + 1.16667 NA intron (NM_001135643, intron 4 of 13) AluSx1|SINE|Alu 19526 NM_001135644 51164 Hs.675564 NM_016221 ENSG00000132912 DCTN4 DYN4|P62 dynactin subunit 4 protein-coding 244.667-8 chr12 63845366 63845777 + 1.16667 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 871 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 236.667-13 chr2 153163137 153163545 + 1.16667 NA Intergenic Intergenic 315421 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 279.334-5 chr2 191269889 191270298 + 1.16667 NA intron (NM_012223, intron 1 of 28) intron (NM_012223, intron 1 of 28) 24689 NM_012223 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 201.167-8 chr11 87444879 87445067 + 1.16667 NA Intergenic Intergenic 274438 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 235.834-7 chr3 80008866 80009115 + 1.16667 NA Intergenic Intergenic -240992 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 218.5-20 chr16 3308627 3308827 + 1.16667 NA exon (NM_001324085, exon 2 of 5) exon (NM_001324085, exon 2 of 5) 2515 NM_001324041 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 284.167-5 chr11 113327077 113327440 + 1.16667 NA intron (NM_001318533, intron 6 of 21) intron (NM_001318533, intron 6 of 21) 12675 NM_001352037 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 196.334-8 chr2 69959824 69960058 + 1.16667 NA TTS (NM_152792) TTS (NM_152792) 2324 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 233.334-7 chr6 129463590 129463926 + 1.16667 NA intron (NM_000426, intron 49 of 64) intron (NM_000426, intron 49 of 64) 246419 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 468.001 chr1 110669569 110670252 + 1.16667 NA intron (NR_109845, intron 1 of 2) intron (NR_109845, intron 1 of 2) 1865 NR_109846 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 279.501 chr1 26131180 26131520 + 1.16667 NA Intergenic L1MCa|LINE|L1 19526 NM_001243533 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 254.333-22 chr2 26338591 26338970 + 1.16667 NA intron (NR_135916, intron 1 of 12) intron (NR_135916, intron 1 of 12) 7031 NM_001321975 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 256-28 chr7 103049308 103049758 + 1.16667 NA intron (NM_001111038, intron 2 of 18) MER57-int|LTR|ERV1 25035 NM_145032 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 298.001 chr14 77140385 77140798 + 1.16667 NA 5' UTR (NM_001364172, exon 1 of 3) 5' UTR (NM_001364172, exon 1 of 3) 153 NM_001364172 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 223.333-32 chr4 103920138 103920557 + 1.16667 NA Intergenic Intergenic -200362 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 201.834-9 chr5 99786474 99786660 + 1.16667 NA Intergenic L1MC2|LINE|L1 252577 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 241.334-9 chr7 116571225 116571491 + 1.16667 NA intron (NR_120506, intron 3 of 4) intron (NR_120506, intron 3 of 4) 43462 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 350.833-4 chr22 22205276 22205882 + 1.16667 NA Intergenic Intergenic -39207 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 222.167-2 chr1 87625735 87626059 + 1.16667 NA Intergenic L1MEd|LINE|L1 -254242 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 317.334-7 chr19 16496640 16497069 + 1.16667 NA promoter-TSS (NM_145046) promoter-TSS (NM_145046) 460 NM_032207 84167 Hs.631627 NM_032207 ENSG00000105072 C19orf44 - chromosome 19 open reading frame 44 protein-coding 210.667-23 chr18_GL383571v1_alt 30853 31059 + 1.16667 NA Intergenic Intergenic 131491 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 733.333 chr2 151998385 151999745 + 1.16667 NA intron (NM_000726, intron 2 of 13) HAL1ME|LINE|L1 -25087 NM_001330115 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 221.167-7 chr11 75685555 75686017 + 1.16667 NA Intergenic L1PA10|LINE|L1 -17352 NM_207577 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 220.5-35 chr4 77223250 77223547 + 1.16667 NA Intergenic L1MA9|LINE|L1 66191 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 442.5-3 chr6 38565606 38566400 + 1.16667 NA intron (NM_001172418, intron 5 of 10) HY1|scRNA|scRNA 30064 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 222.834-3 chr2 22519832 22520298 + 1.16667 NA Intergenic Intergenic -16414 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 211-42 chr6 138327506 138327697 + 1.16667 NA intron (NM_020340, intron 31 of 33) intron (NM_020340, intron 31 of 33) -50042 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 201.333-29 chr20 50086507 50086793 + 1.16667 NA intron (NM_022442, intron 2 of 3) intron (NM_022442, intron 2 of 3) 26500 NM_001032288 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 295.334-4 chr17 69786802 69787101 + 1.16667 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -174756 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 209.167-22 chr3 7654766 7654997 + 1.16667 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -119597 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 203.667-18 chr16 27639736 27639913 + 1.16667 NA intron (NM_015202, intron 5 of 27) intron (NM_015202, intron 5 of 27) 79205 NR_147898 100128079 Hs.610277 NR_147898 LOC100128079 - uncharacterized LOC100128079 ncRNA 189-39 chr4 44432975 44433238 + 1.16667 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 15703 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 267-3 chr10 100912419 100912924 + 1.16667 NA promoter-TSS (NM_001136123) promoter-TSS (NM_001136123) -292 NM_018121 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 282.5-10 chr21 14161906 14162353 + 1.16667 NA intron (NM_001303000, intron 7 of 9) L1MD2|LINE|L1 44820 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 188.834-6 chr16 59998751 59998921 + 1.16667 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 143483 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 232.667-40 chr9 89971268 89971727 + 1.16667 NA intron (NR_109791, intron 1 of 2) intron (NR_109791, intron 1 of 2) 2081 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 239.333-13 chr18 7111520 7111811 + 1.16667 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 6132 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 425.834 chr1 221032709 221033189 + 1.16667 NA Intergenic Intergenic -152809 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 233.5-13 chr2 13730234 13730548 + 1.16667 NA Intergenic Intergenic 670567 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 320.5-19 chr8 119179482 119179834 + 1.16667 NA Intergenic MER5A1|DNA|hAT-Charlie -28705 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 241.334-3 chr15 71008187 71008406 + 1.16667 NA intron (NM_017691, intron 11 of 15) intron (NM_017691, intron 11 of 15) 115853 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 341.334 chr1 116373550 116373975 + 1.16667 NA promoter-TSS (NM_001160233) promoter-TSS (NM_001160233) -105 NM_001160233 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 377.334-4 chr5 33426460 33426985 + 1.16667 NA Intergenic L1PA15|LINE|L1 -13974 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 321.168 chr10 117461986 117462508 + 1.16667 NA Intergenic Intergenic -80198 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 183.667-23 chr18 703474 703771 + 1.16667 NA intron (NM_202758, intron 2 of 14) intron (NM_202758, intron 2 of 14) 9008 NM_001354068 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 170-5 chr10 96556632 96556791 + 1.16667 NA intron (NM_020123, intron 5 of 14) L2a|LINE|L2 30301 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 227.334-3 chr10 15982661 15983031 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -122313 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 251.167-8 chr15 60685393 60685718 + 1.16667 NA intron (NR_120318, intron 2 of 2) intron (NR_120318, intron 2 of 2) 3986 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 325.167-8 chr2 71490603 71490969 + 1.16667 NA intron (NM_001130985, intron 3 of 54) L1ME4b|LINE|L1 24087 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 288.667-10 chr18 39416241 39416490 + 1.16667 NA intron (NR_024391, intron 3 of 3) Tigger3b|DNA|TcMar-Tigger 205810 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 264-18 chr16 74157713 74158136 + 1.16667 NA Intergenic L1M5|LINE|L1 57597 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 188.167-19 chr2 111647845 111648033 + 1.16667 NA Intergenic L1MB4|LINE|L1 123195 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 198.167-15 chr18 895877 896227 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -8819 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 293.667-2 chr10 122270074 122270586 + 1.16667 NA promoter-TSS (NM_144587) promoter-TSS (NM_144587) -966 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 301-29 chr8 107913434 107913737 + 1.16667 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 168354 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 228.334-4 chr16 58815315 58815644 + 1.16667 NA Intergenic L2a|LINE|L2 -81163 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 222.834-10 chr7 30596564 30596763 + 1.16667 NA intron (NM_002047, intron 1 of 16) (TGTATTG)n|Simple_repeat|Simple_repeat 1785 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 277.167-7 chr2 21958631 21959004 + 1.16667 NA Intergenic Intergenic -248165 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 187.667-8 chr11 10219883 10220128 + 1.16667 NA intron (NM_030962, intron 1 of 39) THE1B-int|LTR|ERVL-MaLR 74202 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 319.834-5 chr4 27689894 27690243 + 1.16667 NA Intergenic L1PA16|LINE|L1 472589 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 173.667-47 chr7 108735365 108735612 + 1.16667 NA Intergenic Intergenic 149099 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 241-16 chr3 46622523 46623041 + 1.16667 NA intron (NM_001195442, intron 2 of 2) L1MEc|LINE|L1 10257 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 169.834-6 chr17 49891226 49891445 + 1.16667 NA Intergenic Intergenic -43318 NM_001077505 255061 Hs.652130 NM_170685 ENSG00000176358 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 protein-coding 255-4 chr1 200121677 200121964 + 1.16667 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 78995 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 294.001 chr10 64729793 64730088 + 1.16667 NA Intergenic MIR|SINE|MIR -95588 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 341.167-15 chr8 59245218 59245797 + 1.16667 NA Intergenic L1MA9|LINE|L1 126297 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 369.334 chr12 56774888 56775485 + 1.16667 NA intron (NM_003725, intron 2 of 4) intron (NM_003725, intron 2 of 4) 11862 NM_003725 8630 Hs.524513 NM_003725 ENSG00000025423 HSD17B6 HSE|RODH|SDR9C6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding 200-34 chr5 136085717 136085937 + 1.16667 NA Intergenic L1ME1|LINE|L1 -5229 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 263.667-14 chr20 36808694 36809128 + 1.16667 NA intron (NM_199181, intron 7 of 14) intron (NM_199181, intron 7 of 14) -35148 NM_001145317 79980 Hs.632268 NM_024918 ENSG00000149636 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1 component of MIS12 kinetochore complex protein-coding 193.333-41 chr22 25050220 25050502 + 1.16667 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 22387 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 281.833-13 chr5 108321853 108322280 + 1.16667 NA intron (NM_001163315, intron 4 of 8) L1ME4b|LINE|L1 60032 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 319.001-4 chr3 168040861 168041189 + 1.16667 NA intron (NM_014498, intron 6 of 15) intron (NM_014498, intron 6 of 15) 54899 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 223.167-15 chr4 71494924 71495230 + 1.16667 NA intron (NM_003759, intron 12 of 22) intron (NM_003759, intron 12 of 22) 156024 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 574 chr14 80995862 80996960 + 1.16667 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 40790 NM_001018036 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 182.5-32 chr5 98229335 98229560 + 1.16667 NA Intergenic L1PA10|LINE|L1 -68208 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 168.334-9 chr6 49205517 49205766 + 1.16667 NA Intergenic Intergenic 257612 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 382.001-3 chr3 138923585 138924228 + 1.16667 NA Intergenic LTR88a|LTR|Gypsy? 20114 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 218.667-13 chr17 59785674 59785993 + 1.16667 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -55433 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 226.334-6 chr3 44192913 44193150 + 1.16667 NA Intergenic L1MEf|LINE|L1 -48855 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 256.834-4 chr20 37206593 37206910 + 1.16667 NA intron (NM_001135771, intron 5 of 16) AluSz6|SINE|Alu -27203 NM_152503 140699 Hs.349125 NM_152503 ENSG00000101353 MROH8 C20orf131|C20orf132 maestro heat like repeat family member 8 protein-coding 184.334 chr1 107276900 107277083 + 1.16667 NA intron (NM_001113226, intron 1 of 6) LTR16B2|LTR|ERVL 128922 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 266.334-6 chr8 42713435 42713790 + 1.16667 NA intron (NM_001347717, intron 4 of 6) L1PB4|LINE|L1 16236 NM_001347717 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 171-59 chr8 136816392 136816595 + 1.16667 NA intron (NR_147196, intron 4 of 5) MIRc|SINE|MIR 285695 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 301.167-6 chr16 61458497 61458953 + 1.16667 NA Intergenic Intergenic -402959 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 248.667-20 chr2 118214277 118214576 + 1.16667 NA Intergenic L1MD1|LINE|L1 -28040 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 271.501-3 chr17 39730569 39730898 + 1.16667 NA promoter-TSS (NM_032339) promoter-TSS (NM_032339) -170 NM_001330206 84299 Hs.333526 NM_032339 ENSG00000141741 MIEN1 C17orf37|C35|ORB3|RDX12|XTP4 migration and invasion enhancer 1 protein-coding 286.167-18 chr6 162227409 162227924 + 1.16667 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -499466 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 213-14 chr11 108655778 108656007 + 1.16667 NA Intergenic Intergenic -9177 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 190-21 chr14 57501298 57501615 + 1.16667 NA Intergenic LTR84b|LTR|ERVL -7599 NM_001283056 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 195.167-13 chr15 56795095 56795467 + 1.16667 NA Intergenic L3b|LINE|CR1 -61195 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 419-10 chr2 122203297 122203956 + 1.16667 NA Intergenic Intergenic 447975 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 294.667-20 chr5 24267052 24267496 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger 315926 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 288.001-3 chr3 42674010 42674304 + 1.16667 NA Intergenic L1MD2|LINE|L1 -11380 NM_152393 131377 Hs.350288 NM_152393 ENSG00000157119 KLHL40 KBTBD5|NEM8|SRYP|SYRP kelch like family member 40 protein-coding 278.5-3 chr10 12799555 12800017 + 1.16667 NA intron (NM_001351032, intron 8 of 11) intron (NM_001351032, intron 8 of 11) -74433 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 288.167-20 chr8 120956116 120956574 + 1.16667 NA Intergenic MER57B1|LTR|ERV1 -144299 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 252.5-11 chr17 74656632 74656990 + 1.16667 NA Intergenic Intergenic -14320 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 287.5-18 chr5 150335151 150335648 + 1.16667 NA Intergenic Intergenic -22240 NM_001135243 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 237.334-12 chr5 41940928 41941137 + 1.16667 NA intron (NM_012176, intron 6 of 6) intron (NM_012176, intron 6 of 6) 15751 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 278.334 chr1 26417503 26417823 + 1.16667 NA intron (NM_024674, intron 2 of 3) MIR|SINE|MIR 6846 NM_024674 79727 Hs.86154 NM_024674 ENSG00000131914 LIN28A CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A lin-28 homolog A protein-coding 291.001 chr18 4713041 4713393 + 1.16667 NA Intergenic L2a|LINE|L2 -257910 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 261.667-18 chr2 222736382 222736725 + 1.16667 NA Intergenic Intergenic 64895 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 257-32 chr7 44415340 44415730 + 1.16667 NA intron (NM_015332, intron 3 of 5) intron (NM_015332, intron 3 of 5) 75123 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 236-24 chr7 38058455 38058815 + 1.16667 NA Intergenic Intergenic -119610 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 377.834 chr10 23217940 23218295 + 1.16667 NA intron (NM_001365862, intron 15 of 15) intron (NM_001365862, intron 15 of 15) 25805 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 176.834 chr12 56751389 56751635 + 1.16667 NA intron (NM_000946, intron 1 of 12) AluSx|SINE|Alu 811 NM_000946 5557 Hs.534339 NM_000946 ENSG00000198056 PRIM1 p49 DNA primase subunit 1 protein-coding 277.167-3 chr13 45220088 45220365 + 1.16667 NA intron (NM_004128, intron 5 of 7) MamRTE1|LINE|RTE-BovB -19181 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 188.5-23 chr2 136780992 136781389 + 1.16667 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 15645 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 227.334-5 chr11 75995830 75996150 + 1.16667 NA intron (NM_003369, intron 8 of 14) intron (NM_003369, intron 8 of 14) 180780 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 172.667-30 chr2 74612773 74613057 + 1.16667 NA intron (NM_001321739, intron 3 of 10) L1MCa|LINE|L1 35122 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 212.833-3 chr1 81219065 81219459 + 1.16667 NA Intergenic L2b|LINE|L2 -86930 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 259.667-10 chr2 20667050 20667272 + 1.16667 NA promoter-TSS (NM_182828) promoter-TSS (NM_182828) 17 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 251.001 chr5 112767037 112767306 + 1.16667 NA intron (NM_001354895, intron 3 of 15) intron (NM_001354895, intron 3 of 15) 29286 NM_001354898 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 178.833-13 chr15 97951981 97952328 + 1.16667 NA Intergenic L1ME3G|LINE|L1 -8549 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 276-3 chr10 23810285 23810738 + 1.16667 NA intron (NM_001098500, intron 1 of 18) (TATATAT)n|Simple_repeat|Simple_repeat 115784 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 218.834-6 chr5 151453528 151453808 + 1.16667 NA intron (NM_001349740, intron 1 of 11) intron (NM_001349740, intron 1 of 11) 6065 NM_001308150 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 174.333-43 chrX 39465969 39466232 + 1.16667 NA Intergenic Intergenic -74326 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 245-10 chr13 47328077 47328370 + 1.16667 NA Intergenic L1M4|LINE|L1 -431147 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 325.167-3 chr14 67170164 67170485 + 1.16667 NA intron (NM_001024218, intron 20 of 21) intron (NM_001024218, intron 20 of 21) -19116 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 177.5-3 chr1 206766603 206766809 + 1.16667 NA TTS (NM_000572) TTS (NM_000572) -4067 NM_153758 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 188.5-42 chr6 145977846 145978079 + 1.16667 NA Intergenic Intergenic -13604 NM_001370327 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 234.667-34 chr8 136566453 136566738 + 1.16667 NA intron (NR_147196, intron 2 of 5) L1P4|LINE|L1 35797 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 221.167-12 chr14 75265774 75265988 + 1.16667 NA Intergenic L2a|LINE|L2 -12947 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 183.334-6 chr17 39250396 39250627 + 1.16667 NA Intergenic AluSx|SINE|Alu -24566 NM_198993 342667 Hs.145068 NM_198993 ENSG00000141750 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 181.834-12 chrX 74292675 74292934 + 1.16667 NA intron (NR_028379, intron 1 of 6) intron (NR_028379, intron 1 of 6) 770 NR_028379 100302692 Hs.349570 NR_028379 ENSG00000230590 FTX LINC00182|MIR374AHG|NCRNA00182 FTX transcript, XIST regulator ncRNA 170.334-11 chr8 117574019 117574255 + 1.16667 NA Intergenic Intergenic 53424 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 323.5-11 chr3 11135230 11135764 + 1.16667 NA Intergenic AluSq2|SINE|Alu -1741 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 177.333-32 chr6 160667811 160668116 + 1.16667 NA Intergenic Intergenic -3704 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 418.334 chr10 10099623 10100081 + 1.16667 NA Intergenic L1MC|LINE|L1 41130 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 219.167-3 chr10 126412805 126412992 + 1.16667 NA TTS (NR_073453) TTS (NR_073453) 8981 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 - long intergenic non-protein coding RNA 601 ncRNA 223.834-12 chr8 120613923 120614192 + 1.16667 NA intron (NM_021021, intron 3 of 6) MIRc|SINE|MIR -147196 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 407.833-7 chr7 104853484 104854167 + 1.16667 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -49733 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 184.167-12 chr15 57969284 57969518 + 1.16667 NA intron (NM_170696, intron 6 of 11) intron (NM_170696, intron 6 of 11) 44622 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 180-22 chr14 96564054 96564433 + 1.16667 NA intron (NM_001363662, intron 20 of 20) L1MC5|LINE|L1 61378 NM_001293628 10914 Hs.253726 NM_032632 ENSG00000090060 PAPOLA PAP|PAP-alpha poly(A) polymerase alpha protein-coding 217.834-4 chr7 116797875 116798090 + 1.16667 NA 3' UTR (NM_001324402, exon 20 of 20) 3' UTR (NM_001324402, exon 20 of 20) -64605 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 258.501-3 chr5 78331606 78332088 + 1.16667 NA Intergenic Intergenic 28694 NR_105014 728769 Hs.586193 NR_105014 ENSG00000245556 SCAMP1-AS1 - SCAMP1 antisense RNA 1 ncRNA 314.834-3 chr6 2952885 2953263 + 1.16667 NA exon (NM_001297699, exon 5 of 7) exon (NM_001297699, exon 5 of 7) 9056 NM_001271825 5269 Hs.519523 NM_004568 ENSG00000124570 SERPINB6 CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3 serpin family B member 6 protein-coding 186.501 chr2 100430709 100430868 + 1.16667 NA Intergenic L1MB8|LINE|L1 -13120 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 278.334-11 chr5 113020320 113020613 + 1.16667 NA non-coding (NR_038352, exon 9 of 9) non-coding (NR_038352, exon 9 of 9) 43668 NM_152624 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 207.834-10 chr7 103422020 103422333 + 1.16667 NA intron (NR_135802, intron 2 of 17) intron (NR_135802, intron 2 of 17) 21035 NR_120442 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 195-27 chr20 17968787 17969050 + 1.16667 NA promoter-TSS (NM_001310339) promoter-TSS (NM_001310339) -25 NM_001363738 92667 Hs.320823 NM_052865 ENSG00000125871 MGME1 C20orf72|DDK1|MTDPS11|bA504H3.4 mitochondrial genome maintenance exonuclease 1 protein-coding 182.167-20 chr3 148930778 148931000 + 1.16667 NA Intergenic Intergenic -60519 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 281.167-13 chr2 88534876 88535216 + 1.16667 NA Intergenic L1MA5|LINE|L1 -3674 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 192.667-28 chr5 37613872 37614179 + 1.16667 NA intron (NM_001345998, intron 10 of 17) MLT1D|LTR|ERVL-MaLR 220797 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 248.167-21 chr6 26652523 26652872 + 1.16667 NA intron (NM_001242799, intron 1 of 2) AluSq2|SINE|Alu 7049 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 174-23 chr2 22990175 22990402 + 1.16667 NA Intergenic Intergenic -394891 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 391.167-5 chr14 21139872 21140516 + 1.16667 NA Intergenic L1MD|LINE|L1 15869 NM_001004731 390445 Hs.553768 NM_001004731 ENSG00000169327 OR5AU1 OR14-38 olfactory receptor family 5 subfamily AU member 1 protein-coding 220-26 chr5 137656398 137656734 + 1.16667 NA intron (NM_017415, intron 8 of 14) intron (NM_017415, intron 8 of 14) -8917 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 167.167-34 chr8 91063871 91064037 + 1.16667 NA intron (NR_110438, intron 2 of 2) intron (NR_110438, intron 2 of 2) 6235 NR_110438 100506365 Hs.153412 NR_110438 ENSG00000253738 OTUD6B-AS1 GS1-251I9.4 OTUD6B antisense RNA 1 (head to head) ncRNA 164.667-15 chr15 38388912 38389063 + 1.16667 NA Intergenic Intergenic -65140 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 210.334-4 chr14 85591838 85592061 + 1.16667 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 58600 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 180.833-23 chr8 24156232 24156498 + 1.16667 NA Intergenic Intergenic -137675 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 393 chr2 124050824 124051192 + 1.16667 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 25721 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 171.834 chr13 38195761 38196155 + 1.16667 NA Intergenic Intergenic -52726 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 235.5-13 chr22 29585192 29585489 + 1.16667 NA Intergenic Intergenic -4227 NM_003634 8508 Hs.173878 NM_003634 ENSG00000184117 NIPSNAP1 - nipsnap homolog 1 protein-coding 331.167-12 chr5 20220227 20220719 + 1.16667 NA intron (NM_001291956, intron 2 of 14) L1MA3|LINE|L1 -85078 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 241.334 chr1 71931183 71931487 + 1.16667 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) -94323 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 265.001-2 chr2 55978086 55978369 + 1.16667 NA intron (NR_126406, intron 2 of 2) MER65-int|LTR|ERV1 4849 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 282.834-13 chr9 69543767 69544100 + 1.16667 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 128438 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 190.667-13 chr11 108222385 108222738 + 1.16667 NA promoter-TSS (NM_002519) promoter-TSS (NM_002519) 77 NM_002519 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 177.667-40 chr7 70217459 70217694 + 1.16667 NA intron (NM_015570, intron 4 of 18) LTR67B|LTR|ERVL 619101 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 165.167-28 chr3 195285037 195285303 + 1.16667 NA intron (NM_012287, intron 22 of 22) intron (NM_012287, intron 22 of 22) -14011 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 167.667-10 chr15 64452413 64452601 + 1.16667 NA intron (NM_001321924, intron 12 of 12) intron (NM_001321924, intron 12 of 12) -46913 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 195.834-2 chr1 47561024 47561242 + 1.16667 NA Intergenic Intergenic -123816 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 190.167-16 chr3 76502051 76502363 + 1.16667 NA Intergenic Intergenic -537892 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 229.833-4 chr1 232543879 232544232 + 1.16667 NA Intergenic Intergenic -28447 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 351.667-11 chr3 66276481 66276931 + 1.16667 NA intron (NM_001350992, intron 4 of 8) intron (NM_001350992, intron 4 of 8) 55703 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 276.167-19 chr6 142683461 142683875 + 1.16667 NA Intergenic Intergenic -45779 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 299.834-5 chr17 32819828 32820429 + 1.16667 NA intron (NM_015194, intron 1 of 21) L1MA9|LINE|L1 56996 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 167.334-3 chr13 20906837 20907155 + 1.16667 NA Intergenic L3|LINE|CR1 -4222 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 231.167-16 chr2 70884826 70885109 + 1.16667 NA Intergenic L1MC4|LINE|L1 -2904 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 300.834-7 chr2 40831613 40831933 + 1.16667 NA Intergenic L2a|LINE|L2 -319338 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 183.167-33 chr6 52009926 52010143 + 1.16667 NA intron (NM_138694, intron 35 of 66) intron (NM_138694, intron 35 of 66) 77579 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 229.833-20 chr6 36606676 36607082 + 1.16667 NA Intergenic Intergenic 12517 NM_003017 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 407.167-3 chr1 218707170 218707715 + 1.16667 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 197347 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 307.833-2 chr11 8906383 8906926 + 1.16667 NA intron (NM_005418, intron 1 of 22) intron (NM_005418, intron 1 of 22) 4297 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 182.167-27 chr6 45120835 45121109 + 1.16667 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 76798 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 345.167-14 chr9 133409265 133409722 + 1.16667 NA intron (NM_001279351, intron 5 of 7) intron (NM_001279351, intron 5 of 7) -4846 NR_024514 11093 Hs.131433 NM_139025 ENSG00000160323 ADAMTS13 ADAM-TS13|ADAMTS-13|C9orf8|VWFCP|vWF-CP ADAM metallopeptidase with thrombospondin type 1 motif 13 protein-coding 228-21 chr17 39654802 39655147 + 1.16667 NA intron (NM_001165938, intron 2 of 13) intron (NM_001165938, intron 2 of 13) -10372 NM_003673 8557 Hs.77628 NM_003673 ENSG00000173991 TCAP CMD1N|CMH25|LGMD2G|LGMDR7|T-cap|TELE|telethonin titin-cap protein-coding 179.834-3 chr13 28664585 28664847 + 1.16667 NA intron (NM_015932, intron 3 of 5) intron (NM_015932, intron 3 of 5) 5586 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 200.167-18 chr3 150604060 150604395 + 1.16667 NA intron (NM_016275, intron 1 of 5) intron (NM_016275, intron 1 of 5) 906 NM_016275 51714 Hs.369052 NM_016275 ENSG00000198843 SELENOT SELT selenoprotein T protein-coding 195-6 chr11 45879990 45880301 + 1.16667 NA intron (NM_001127457, intron 11 of 11) intron (NM_001127457, intron 11 of 11) -5506 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding 199.334-8 chr8 140833327 140833637 + 1.16667 NA intron (NM_001352746, intron 4 of 30) intron (NM_001352746, intron 4 of 30) -100829 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 291.501 chr6 125780388 125780769 + 1.16667 NA promoter-TSS (NM_001199619) promoter-TSS (NM_001199619) -537 NM_001199620 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 209.834-8 chr4 70544522 70544795 + 1.16667 NA Intergenic Intergenic 26089 NM_001286731 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 224.667-3 chr1 219709508 219709801 + 1.16667 NA Intergenic Intergenic -96509 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 299.834-14 chr8 118413716 118414034 + 1.16667 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -207126 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 214.001 chr1 195604465 195604682 + 1.16667 NA Intergenic Intergenic 484142 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 200.334-6 chr2 23729880 23730090 + 1.16667 NA Intergenic L1MEf|LINE|L1 197138 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 188.333-37 chr6 153964066 153964455 + 1.16667 NA Intergenic L1MB1|LINE|L1 -46236 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 349.834-3 chr9 96837785 96838352 + 1.16667 NA intron (NM_001346995, intron 2 of 3) L1MDa|LINE|L1 16446 NM_001346995 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 355.501 chr2 142158089 142158516 + 1.16667 NA Intergenic Intergenic -26601 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 269.667 chr1 29992733 29993201 + 1.16667 NA Intergenic Intergenic 44645 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 204.334-10 chr8 25494304 25494654 + 1.16667 NA intron (NM_001317906, intron 12 of 13) intron (NM_001317906, intron 12 of 13) 35246 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 461.833 chr8 115503345 115504015 + 1.16667 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 164333 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 174-34 chr22 32496112 32496327 + 1.16667 NA intron (NM_001257990, intron 8 of 8) AluSx|SINE|Alu 20982 NM_001257990 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 439.167-3 chr16 35796814 35797443 + 1.16667 NA Intergenic MER101-int|LTR|ERV1 50576 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 208.667 chr1 38679074 38679412 + 1.16667 NA Intergenic MLT1G1|LTR|ERVL-MaLR 180529 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 237.667-3 chr10 104182390 104182719 + 1.16667 NA intron (NM_025145, intron 16 of 37) intron (NM_025145, intron 16 of 37) 36329 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 194-24 chr2 157151542 157151741 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -106064 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 283.334-3 chr10 71251314 71251665 + 1.16667 NA intron (NM_001244889, intron 1 of 15) intron (NM_001244889, intron 1 of 15) -33261 NR_038453 728978 Hs.646725 NR_038453 ENSG00000237512 UNC5B-AS1 - UNC5B antisense RNA 1 ncRNA 296-7 chr17 77186381 77186917 + 1.16667 NA intron (NM_001144001, intron 1 of 14) intron (NM_001144001, intron 1 of 14) 1436 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 171.167-31 chr5 77266663 77266971 + 1.16667 NA intron (NM_001029853, intron 1 of 20) intron (NM_001029853, intron 1 of 20) 56137 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 200.667-42 chr5 15052269 15052545 + 1.16667 NA Intergenic L1MA5|LINE|L1 -180629 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 268.167-10 chr14 68153178 68153708 + 1.16667 NA intron (NM_133509, intron 7 of 10) L1PREC2|LINE|L1 329851 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 275.834-6 chr4 118367502 118367932 + 1.16667 NA Intergenic AluJr|SINE|Alu -14714 NM_003619 8492 Hs.445857 NM_003619 ENSG00000164099 PRSS12 BSSP-3|BSSP3|MRT1 serine protease 12 protein-coding 255.334-6 chr4 25508974 25509325 + 1.16667 NA Intergenic Charlie5|DNA|hAT-Charlie 60197 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 219.167-5 chr12 16275614 16275952 + 1.16667 NA intron (NM_001170798, intron 1 of 8) intron (NM_001170798, intron 1 of 8) 1902 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 223.5 chr1 11060008 11060427 + 1.16667 NA promoter-TSS (NM_003132) promoter-TSS (NM_003132) -199 NM_003132 6723 Hs.76244 NM_003132 ENSG00000116649 SRM PAPT|SPDSY|SPS1|SRML1 spermidine synthase protein-coding 313.834-5 chr3 135968738 135969094 + 1.16667 NA intron (NM_001190447, intron 1 of 12) L1ME4b|LINE|L1 3188 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 358-16 chr8 76588649 76589030 + 1.16667 NA Intergenic Intergenic -92408 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 270.667-20 chr7 39100153 39100596 + 1.16667 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -86807 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 163.167-7 chr11 33662057 33662223 + 1.16667 NA intron (NM_012194, intron 20 of 20) Tigger15a|DNA|TcMar-Tigger 38600 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 258.5-31 chr8 85964666 85964985 + 1.16667 NA Intergenic Intergenic 104843 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 211.667-21 chr2 118344176 118344389 + 1.16667 NA Intergenic AluY|SINE|Alu -157896 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 329.001-3 chr7 77490939 77491341 + 1.16667 NA Intergenic AluSx1|SINE|Alu -46155 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 438.667-2 chr17 38867644 38868515 + 1.16667 NA Intergenic Intergenic -1780 NM_001271608 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 166.334-7 chr5 83229359 83229560 + 1.16667 NA intron (NM_001318012, intron 6 of 7) intron (NM_001318012, intron 6 of 7) 151912 NM_022406 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 254.334-10 chrX 50774254 50774539 + 1.16667 NA intron (NR_027121, intron 1 of 9) intron (NR_027121, intron 1 of 9) 39648 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 251.667-26 chr3 61533015 61533298 + 1.16667 NA Intergenic AluSz|SINE|Alu -28415 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 228-13 chr13 91381328 91381666 + 1.16667 NA Intergenic Intergenic -17124 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 256.5 chr1 8821537 8822002 + 1.16667 NA Intergenic Intergenic -4129 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 269-16 chr2 163859981 163860438 + 1.16667 NA Intergenic Intergenic -124201 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 254.5-13 chr18 6151132 6151783 + 1.16667 NA intron (NM_001365769, intron 13 of 16) AluSq|SINE|Alu -105287 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 280.5-12 chr18 41696289 41696648 + 1.16667 NA Intergenic L3|LINE|CR1 -175791 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 192.5-21 chr2 230147020 230147369 + 1.16667 NA Intergenic Intergenic 72790 NM_004510 3431 Hs.145150 NM_004509 ENSG00000135899 SP110 IFI41|IFI75|IPR1|VODI SP110 nuclear body protein protein-coding 178-29 chr3 192419394 192419687 + 1.16667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -10491 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 214-17 chr14 101965900 101966212 + 1.16667 NA intron (NM_001376, intron 1 of 77) intron (NM_001376, intron 1 of 77) 1483 NM_001376 1778 Hs.614080 NM_001376 ENSG00000197102 DYNC1H1 CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein cytoplasmic 1 heavy chain 1 protein-coding 424 chr11 111206287 111207144 + 1.16667 NA Intergenic Intergenic -39010 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 307.334-7 chr5 178759219 178759646 + 1.16667 NA Intergenic MER41B|LTR|ERV1 -28773 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 229-17 chr22 46831417 46831748 + 1.16667 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 57655 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 269.334-2 chr1 116557857 116558254 + 1.16667 NA intron (NM_001779, intron 1 of 5) intron (NM_001779, intron 1 of 5) 2056 NR_039621 100616384 NR_039621 ENSG00000264419 MIR548AC - microRNA 548ac ncRNA 338.667-6 chr16 58755822 58756353 + 1.16667 NA Intergenic Intergenic -21771 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 278.834-8 chr5 76816600 76817023 + 1.16667 NA Intergenic Intergenic -2219 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 177.834-3 chr3 16271061 16271221 + 1.16667 NA intron (NM_001330670, intron 3 of 8) intron (NM_001330670, intron 3 of 8) 5929 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 369.833-2 chr20 20824909 20825387 + 1.16667 NA Intergenic Intergenic -112504 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 291.167-8 chr2 80325992 80326350 + 1.16667 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 12792 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 246-10 chr14 58507258 58507616 + 1.16667 NA intron (NM_001329944, intron 27 of 31) intron (NM_001329944, intron 27 of 31) 67756 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 237.667 chr10 19811543 19811935 + 1.16667 NA Intergenic Intergenic -4693 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 268.5-9 chr11 110696824 110697166 + 1.16667 NA intron (NM_001258416, intron 1 of 15) L1PB4|LINE|L1 14830 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 247.5-13 chr15 51499601 51499867 + 1.16667 NA exon (NM_015263, exon 18 of 43) exon (NM_015263, exon 18 of 43) 122488 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 301.667-10 chr2 144083325 144083647 + 1.16667 NA intron (NM_001354355, intron 7 of 13) MLT1H1|LTR|ERVL-MaLR 128093 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 355.334-8 chr22 43060388 43060843 + 1.16667 NA intron (NR_027779, intron 8 of 11) MIRb|SINE|MIR 22030 NR_125362 100506679 Hs.706553 NR_125362 ENSG00000230319 LOC100506679 - uncharacterized LOC100506679 ncRNA 194.834-2 chr10 52118966 52119206 + 1.16667 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 195042 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 270.5-11 chr16 84703276 84703603 + 1.16667 NA intron (NR_073577, intron 1 of 11) intron (NR_073577, intron 1 of 11) 3439 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 191.834-4 chr17 39974131 39974390 + 1.16667 NA intron (NM_178171, intron 8 of 11) intron (NM_178171, intron 8 of 11) -6547 NM_002809 5709 Hs.12970 NM_002809 ENSG00000108344 PSMD3 P58|RPN3|S3|TSTA2 proteasome 26S subunit, non-ATPase 3 protein-coding 366.667 chr10 81212826 81213379 + 1.16667 NA Intergenic Intergenic 563305 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 260.334-4 chr10 121940799 121941210 + 1.16667 NA intron (NR_120495, intron 1 of 1) L1MC2|LINE|L1 -12203 NM_001288736 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 309.834-2 chr13 83728351 83728775 + 1.16667 NA Intergenic AluJr|SINE|Alu 153830 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 322.167-4 chr11 63478760 63479324 + 1.16667 NA intron (NM_054108, intron 3 of 5) intron (NM_054108, intron 3 of 5) 12125 NM_001146729 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 192.167-19 chr18 12486200 12486479 + 1.16667 NA intron (NM_001128626, intron 8 of 16) intron (NM_001128626, intron 8 of 16) 53565 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 226.5-39 chr7 49791331 49791671 + 1.16667 NA intron (NR_136188, intron 1 of 3) intron (NR_136188, intron 1 of 3) 16168 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 205.667-47 chr9 70672392 70672628 + 1.16667 NA intron (NM_001366143, intron 9 of 25) MLT1K|LTR|ERVL-MaLR 137574 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 235.334-3 chr2 7662493 7662702 + 1.16667 NA Intergenic Intergenic 237058 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 331-6 chr11 85574249 85574565 + 1.16667 NA intron (NM_001142699, intron 3 of 27) L2a|LINE|L2 52863 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 237.334-9 chr17 81142623 81142925 + 1.16667 NA intron (NM_001080395, intron 1 of 13) (CCCAGC)n|Simple_repeat|Simple_repeat -9466 NR_031652 100302229 NR_031652 ENSG00000221025 MIR1250 MIRN1250|hsa-mir-1250|mir-1250 microRNA 1250 ncRNA 232.667-42 chrX 65450803 65451153 + 1.16667 NA Intergenic Intergenic -37757 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 340.501-4 chr8 111707835 111708216 + 1.16667 NA Intergenic Intergenic 331386 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 314.334 chr1 50852049 50852632 + 1.16667 NA intron (NM_007051, intron 2 of 18) intron (NM_007051, intron 2 of 18) 107927 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 206.834-5 chr13 90346461 90346680 + 1.16667 NA Intergenic Intergenic 115388 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 249.167-3 chr12 121683359 121683705 + 1.16667 NA Intergenic AluSx4|SINE|Alu -10888 NM_001363685 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 252.501-2 chr4 33887237 33887472 + 1.16667 NA Intergenic Intergenic 152539 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 288.5-12 chr17 71438441 71438970 + 1.16667 NA Intergenic Intergenic -236526 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 234.5-16 chr17 60717395 60717711 + 1.16667 NA intron (NM_001330413, intron 5 of 25) L2a|LINE|L2 39702 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 349-10 chr16 25483470 25483892 + 1.16667 NA Intergenic L1PA15|LINE|L1 -208278 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 164.834-7 chr8 76369019 76369239 + 1.16667 NA Intergenic Intergenic -37525 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 185.501 chr3 142645443 142645637 + 1.16667 NA intron (NM_002670, intron 1 of 15) intron (NM_002670, intron 1 of 15) -11357 NM_001172312 5357 Hs.203637 NM_002670 ENSG00000120756 PLS1 - plastin 1 protein-coding 241.834-8 chr22 39800896 39801124 + 1.16667 NA intron (NM_152512, intron 5 of 6) intron (NM_152512, intron 5 of 6) 92750 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 174.334-6 chr22 19144283 19144650 + 1.16667 NA intron (NM_022719, intron 1 of 9) intron (NM_022719, intron 1 of 9) 185 NR_134304 8220 Hs.517407 NM_022719 ENSG00000100056 ESS2 DGCR13|DGCR14|DGS-H|DGS-I|DGSH|DGSI|ES2|ESS-2|Es2el|bis1 ess-2 splicing factor homolog protein-coding 318.667-14 chr7 2670858 2671313 + 1.16667 NA Intergenic Intergenic -8437 NM_133463 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 214.167-23 chr4 87451745 87451951 + 1.16667 NA intron (NM_024047, intron 6 of 7) intron (NM_024047, intron 6 of 7) 29251 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 228.667-19 chr2 35758589 35758853 + 1.16667 NA Intergenic L1MA1|LINE|L1 287316 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 342.667-11 chr20 10469214 10469665 + 1.16667 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 34134 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 249.667-13 chr16 11063393 11063828 + 1.16667 NA intron (NM_015226, intron 18 of 22) intron (NM_015226, intron 18 of 22) 119046 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 184.334-5 chr5 40385528 40385755 + 1.16667 NA Intergenic Intergenic -294274 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 348-12 chr7 40493686 40494267 + 1.16667 NA intron (NM_024728, intron 11 of 14) intron (NM_024728, intron 11 of 14) 359000 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 306.334-7 chr14 48759651 48760174 + 1.16667 NA Intergenic L1PB|LINE|L1 826468 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 192.334-3 chr17 32447356 32447581 + 1.16667 NA intron (NM_002815, intron 2 of 13) intron (NM_002815, intron 2 of 13) 2958 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 519.501 chr2 33673717 33674371 + 1.16667 NA Intergenic Intergenic -32842 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 280.501-4 chr2 201606262 201606522 + 1.16667 NA intron (NM_001168221, intron 1 of 15) L1MC4|LINE|L1 12786 NM_001168217 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 203.334-8 chr5 138222885 138223555 + 1.16667 NA Intergenic L2a|LINE|L2 -9897 NM_004661 8697 Hs.73625 NM_004661 ENSG00000094880 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 217.167-17 chr20 18490177 18490444 + 1.16667 NA intron (NM_006606, intron 4 of 4) intron (NM_006606, intron 4 of 4) 6915 NM_006606 10741 Hs.69330 NM_006606 ENSG00000089050 RBBP9 BOG|RBBP10 RB binding protein 9, serine hydrolase protein-coding 292.834-8 chr8 107218739 107219053 + 1.16667 NA Intergenic MIRb|SINE|MIR 117619 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 454.834-5 chr7 31196589 31197225 + 1.16667 NA Intergenic Intergenic 143819 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 309.667-10 chr18 51384294 51384678 + 1.16667 NA Intergenic MER45A|DNA|hAT-Tip100 -7556 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 463.834 chr7 74417149 74417766 + 1.16667 NA Intergenic Intergenic -36449 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 171.5-34 chr3 132211199 132211385 + 1.16667 NA Intergenic Intergenic -106115 NM_001292037 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 287.501-2 chr20 6740575 6740966 + 1.16667 NA Intergenic Intergenic -4634 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 310.334-4 chr20 49674554 49674853 + 1.16667 NA intron (NM_004776, intron 1 of 8) FLAM_C|SINE|Alu 39175 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 211.667-30 chr3 176224201 176224404 + 1.16667 NA Intergenic L1MA9|LINE|L1 -20249 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 301.334-6 chr21 23936174 23936455 + 1.16667 NA Intergenic LTR50|LTR|ERVL 385063 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 605.667-2 chr17 78359748 78361350 + 1.16667 NA promoter-TSS (NM_003955) promoter-TSS (NM_003955) 101 NR_110847 101928674 Hs.637297 NR_110845 ENSG00000266970 LOC101928674 - uncharacterized LOC101928674 ncRNA 291.5-8 chr12 57175827 57176278 + 1.16667 NA exon (NM_002332, exon 24 of 89) exon (NM_002332, exon 24 of 89) -18452 NR_031597 100302201 NR_031597 ENSG00000221365 MIR1228 MIRN1228|hsa-mir-1228|mir-1228 microRNA 1228 ncRNA 169.5-28 chr3 36002352 36002650 + 1.16667 NA Intergenic Intergenic 258025 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 342.667 chr1 39102394 39103065 + 1.16667 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 18562 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 247.5-29 chr20 54981558 54982119 + 1.16667 NA Intergenic Intergenic -441205 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 165.5-45 chr8 111668764 111669170 + 1.16667 NA Intergenic MER57B2|LTR|ERV1 292328 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 319.834-2 chr2 117638628 117639038 + 1.16667 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -175858 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 306.667-11 chr2 100888151 100888583 + 1.16667 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 68228 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 437.501 chr10 32543362 32543797 + 1.16667 NA intron (NR_109826, intron 12 of 16) intron (NR_109826, intron 12 of 16) 97439 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 407.333-9 chr7 135672656 135673399 + 1.16667 NA intron (NM_001130929, intron 2 of 2) intron (NM_001130929, intron 2 of 2) 10513 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 185-3 chr1 98392615 98392895 + 1.16667 NA Intergenic Intergenic 182044 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 381.167-2 chr11 106151198 106151773 + 1.16667 NA Intergenic Intergenic -19369 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 422.5-7 chr8 11746124 11746736 + 1.16667 NA intron (NM_002052, intron 2 of 6) intron (NM_002052, intron 2 of 6) -14826 NM_001031839 606553 Hs.545529 NM_001031839 C8orf49 G4DM chromosome 8 open reading frame 49 protein-coding 246.5-10 chr14 75602515 75603084 + 1.16667 NA intron (NM_017791, intron 1 of 9) L1MB3|LINE|L1 -2741 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 282.833-4 chr12 70721594 70722037 + 1.16667 NA intron (NM_130846, intron 2 of 9) intron (NM_130846, intron 2 of 9) 32793 NM_130846 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 181.334-7 chr2 238440035 238440245 + 1.16667 NA intron (NM_001040445, intron 3 of 4) L1MC4|LINE|L1 13213 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 239.333-17 chr20 51446726 51447297 + 1.16667 NA intron (NM_012340, intron 6 of 10) intron (NM_012340, intron 6 of 10) 5966 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 395.334-3 chr17 47001061 47001655 + 1.16667 NA Intergenic Intergenic -22105 NM_203400 388394 Hs.367999 NM_203400 ENSG00000179673 RPRML - reprimo like protein-coding 306.667-16 chr3 42300091 42300459 + 1.16667 NA Intergenic Intergenic -34090 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 199.5-13 chr13 68133943 68134262 + 1.16667 NA Intergenic Intergenic 751223 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 269.334-9 chr6 168710487 168710864 + 1.16667 NA Intergenic Intergenic 253707 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 169.667-11 chr10 78757531 78757702 + 1.16667 NA Intergenic Intergenic 309832 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 294.334-2 chr12 107132260 107132546 + 1.16667 NA Intergenic Intergenic -38854 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 195.5-2 chr10 77692911 77693226 + 1.16667 NA Intergenic Intergenic -55260 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 164.167-48 chr7 5184174 5184459 + 1.16667 NA Intergenic AluSp|SINE|Alu -5917 NM_001033519 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 274.667-3 chr1 55756048 55756397 + 1.16667 NA Intergenic L1M4c|LINE|L1 188741 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 536.334-2 chr18 6405735 6406879 + 1.16667 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 8604 NM_001365768 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 239.834-4 chr2 25610393 25610683 + 1.16667 NA intron (NM_033147, intron 4 of 19) L1ME3A|LINE|L1 39684 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 225.334-6 chr5 124939920 124940267 + 1.16667 NA Intergenic Intergenic -96738 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 165.667-29 chr2 63379966 63380189 + 1.16667 NA intron (NR_148704, intron 12 of 18) intron (NR_148704, intron 12 of 18) 57930 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 202.667-12 chr14 72781911 72782209 + 1.16667 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 110589 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 302.167-9 chr2 184982422 184982791 + 1.16667 NA Intergenic Intergenic 184466 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 178.334-4 chr17 42325747 42326078 + 1.16667 NA intron (NM_001369512, intron 15 of 23) intron (NM_001369512, intron 15 of 23) 37856 NM_001288719 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 215.501 chr13 113359166 113359367 + 1.16667 NA intron (NR_046541, intron 2 of 2) L1ME1|LINE|L1 4864 NM_024719 79774 Hs.745043 NM_024719 ENSG00000139835 GRTP1 TBC1D6 growth hormone regulated TBC protein 1 protein-coding 258.167-5 chr12 13739555 13740033 + 1.16667 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 240562 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 301.001-2 chr8 81884558 81885025 + 1.16667 NA Intergenic Intergenic -42505 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 215.334-2 chr10 4770999 4771350 + 1.16667 NA Intergenic Intergenic -55003 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 177.334 chr1 35037004 35037240 + 1.16667 NA Intergenic MLT1H2|LTR|ERVL-MaLR -5177 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 296.834-4 chr16 72065054 72065556 + 1.16667 NA intron (NM_020995, intron 1 of 4) HERVI-int|LTR|ERV1 2079 NM_020995 3250 Hs.655361 NM_020995 ENSG00000261701 HPR A-259H10.2|HP haptoglobin-related protein protein-coding 265.334-5 chr2 76628584 76628978 + 1.16667 NA Intergenic L1MA4A|LINE|L1 -357184 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 261.833-17 chr8 83944534 83944865 + 1.16667 NA Intergenic Intergenic -238088 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 234-19 chr19 12678902 12679272 + 1.16667 NA intron (NR_161467, intron 5 of 7) AluJr|SINE|Alu 2124 NM_001206974 1725 Hs.79064 NM_001930 ENSG00000095059 DHPS DHS|DS|MIG13 deoxyhypusine synthase protein-coding 303.833-9 chr3 178257230 178257738 + 1.16667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -161717 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 168.5-12 chr12 62238039 62238230 + 1.16667 NA Intergenic L1M3f|LINE|L1 -22206 NM_001351162 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 175.667-27 chr2 66948266 66948499 + 1.16667 NA intron (NR_110169, intron 4 of 4) MER58A|DNA|hAT-Charlie -25892 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 194.5-14 chr12 53777895 53778140 + 1.16667 NA Intergenic L1ME5|LINE|L1 -20983 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 167.834-6 chr18 28621812 28622114 + 1.16667 NA Intergenic L1ME1|LINE|L1 -444833 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 237.5-30 chr3 45689404 45689649 + 1.16667 NA promoter-TSS (NR_033947) promoter-TSS (NR_033947) 130 NM_014016 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 373.834-3 chr5 2875384 2875946 + 1.16667 NA Intergenic Intergenic -42189 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 235.667-5 chr11 11843577 11843985 + 1.16667 NA intron (NM_017944, intron 1 of 26) intron (NM_017944, intron 1 of 26) 2358 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 233.834-2 chr11 47489288 47489537 + 1.16667 NA promoter-TSS (NM_001025596) promoter-TSS (NM_001025596) -388 NM_001172640 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 281.167-11 chr18 61730602 61730924 + 1.16667 NA Intergenic L1ME1|LINE|L1 -17413 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 531.166 chr9 131742052 131743298 + 1.16667 NA Intergenic Intergenic -2731 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 231.167-10 chr12 32918213 32918602 + 1.16667 NA Intergenic GA-rich|Low_complexity|Low_complexity -21561 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 313.5-19 chr5 26009927 26010380 + 1.16667 NA Intergenic L1MA7|LINE|L1 819200 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 255.334-3 chr14 36290072 36290529 + 1.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR 30337 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 206.834-4 chr13 19972226 19972504 + 1.16667 NA intron (NM_003453, intron 3 of 25) intron (NM_003453, intron 3 of 25) 12551 NR_148365 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 376.001 chr3 160163187 160163643 + 1.16667 NA intron (NR_108088, intron 3 of 9) intron (NR_108088, intron 3 of 9) 43677 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 191-35 chr4 60794596 60794981 + 1.16667 NA Intergenic Intergenic -127831 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 201.334-3 chr1 117980943 117981246 + 1.16667 NA intron (NM_206996, intron 43 of 48) intron (NM_206996, intron 43 of 48) 51355 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 164.834-5 chr20 52490375 52490547 + 1.16667 NA Intergenic Intergenic -130377 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 186.5-6 chr13 89528878 89529066 + 1.16667 NA Intergenic Intergenic -28463 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 248.333-21 chr22 30449121 30449506 + 1.16667 NA Intergenic Intergenic 16627 NR_148046 105372990 Hs.565803 NR_148046 LOC105372990 - uncharacterized LOC105372990 ncRNA 230-7 chr10 101950571 101950976 + 1.16667 NA intron (NM_024541, intron 22 of 25) L1MB8|LINE|L1 105400 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 238.167-7 chr12 56461422 56461807 + 1.16667 NA Intergenic AluJr4|SINE|Alu -6957 NM_012064 4284 Hs.574026 NM_012064 ENSG00000135517 MIP AQP0|CTRCT15|LIM1|MIP26|MP26 major intrinsic protein of lens fiber protein-coding 215.834-3 chr12 21690597 21691003 + 1.16667 NA Intergenic L1PA15|LINE|L1 -32945 NM_001315537 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 239.167-35 chr9 27539215 27539607 + 1.16667 NA Intergenic Intergenic -9597 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 349.5-6 chr2 72992633 72993045 + 1.16667 NA intron (NR_138476, intron 9 of 14) intron (NR_138476, intron 9 of 14) 66333 NM_001330407 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 186.5-23 chr3 188349091 188349344 + 1.16667 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 123812 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 300.501 chr13 91078033 91078472 + 1.16667 NA Intergenic Intergenic 11365 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 252.334-8 chr4 175335056 175335382 + 1.16667 NA Intergenic MIR|SINE|MIR 416861 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 292.167-7 chr18 2781749 2782162 + 1.16667 NA intron (NM_015295, intron 44 of 47) L1MEd|LINE|L1 -65051 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 214.667-21 chr2 196189915 196190246 + 1.16667 NA Intergenic L1MC3|LINE|L1 -18502 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 320.333-8 chr9 117462383 117462873 + 1.16667 NA Intergenic Intergenic -47571 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 358.5-9 chr18 13817195 13817780 + 1.16667 NA Intergenic Intergenic -6662 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 272.167-17 chr4 35893215 35893670 + 1.16667 NA Intergenic L1M5|LINE|L1 350497 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 236.334-3 chr13 26928046 26928488 + 1.16667 NA Intergenic L1MEg|LINE|L1 -167481 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 235.834 chr12 40654333 40654617 + 1.16667 NA Intergenic Intergenic -37964 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 275.667-18 chr4 133723657 133724092 + 1.16667 NA Intergenic L1MA9|LINE|L1 477915 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 218.334-4 chr2 68426557 68426839 + 1.16667 NA Intergenic MIR|SINE|MIR 40596 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 288.334-8 chr16 65030104 65030386 + 1.16667 NA intron (NM_001797, intron 2 of 12) MER53|DNA|hAT 91818 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 208.834-5 chr5 122829841 122830184 + 1.16667 NA 3' UTR (NM_001278199, exon 15 of 15) 3' UTR (NM_001278199, exon 15 of 15) -15437 NR_146145 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 532.667-2 chr2 42810229 42811115 + 1.16667 NA Intergenic CpG -18089 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 235.667-9 chr14 31835296 31835586 + 1.16667 NA intron (NM_001201573, intron 6 of 8) MIRb|SINE|MIR -109412 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 263.167-7 chr14 92714636 92715127 + 1.16667 NA intron (NM_001363699, intron 6 of 12) intron (NM_001363699, intron 6 of 12) 33746 NM_005606 5641 Hs.18069 NM_005606 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 424.5-3 chr11 25816312 25817058 + 1.16667 NA Intergenic AluSz|SINE|Alu -372438 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 182.5-13 chr14 40245023 40245279 + 1.16667 NA Intergenic Intergenic -709560 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 181.334-12 chr9 76629833 76630219 + 1.16667 NA intron (NM_001308050, intron 7 of 10) MIR|SINE|MIR 62389 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 164-25 chr18 8380162 8380338 + 1.16667 NA intron (NM_002845, intron 26 of 30) intron (NM_002845, intron 26 of 30) -13216 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 308.001-3 chr10 74600344 74600731 + 1.16667 NA intron (NM_001369124, intron 8 of 9) intron (NM_001369124, intron 8 of 9) -71213 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 326.334-2 chr13 37769988 37770381 + 1.16667 NA intron (NM_003306, intron 2 of 10) intron (NM_003306, intron 2 of 10) 100241 NM_001135957 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 228.834 chr1 15592088 15592362 + 1.16667 NA Intergenic Charlie17|DNA|hAT-Charlie -7174 NM_024758 79814 Hs.461532 NM_024758 ENSG00000116771 AGMAT - agmatinase protein-coding 168.167-16 chr2 46064371 46064741 + 1.16667 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -232851 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 183.167-43 chr9 17840193 17840421 + 1.16667 NA Intergenic Intergenic 261241 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 174.334-11 chr9 112202266 112202624 + 1.16667 NA Intergenic MLT1L|LTR|ERVL-MaLR -27148 NM_001282640 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 210.001 chr2 21114198 21114389 + 1.16667 NA Intergenic Kanga1|DNA|TcMar-Tc2 -9693 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 250.334-4 chr2 32119362 32119777 + 1.16667 NA intron (NM_001363875, intron 6 of 15) intron (NM_001363875, intron 6 of 15) -46272 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 510.5 chr10 25077946 25078884 + 1.16667 NA Intergenic Tigger4b|DNA|TcMar-Tigger -16136 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 184.5-11 chr11 13387256 13387591 + 1.16667 NA TTS (NM_001297742) TTS (NM_001297742) 52856 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 212.667-45 chr7 35383537 35384110 + 1.16667 NA Intergenic L1ME4a|LINE|L1 69968 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 322.667-11 chr15 45399793 45400255 + 1.16667 NA intron (NM_001321015, intron 1 of 11) AluSx1|SINE|Alu 2203 NM_001321015 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 188.834-2 chr11 95694870 95695105 + 1.16667 NA Intergenic Intergenic 94795 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 168.667-34 chr4 38129224 38129515 + 1.16667 NA intron (NM_001253912, intron 19 of 20) intron (NM_001253912, intron 19 of 20) 9415 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 171.333-18 chr15 64589648 64589898 + 1.16667 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 90353 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 287.667-6 chr12 62560528 62560969 + 1.16667 NA exon (NM_001278471, exon 26 of 34) exon (NM_001278471, exon 26 of 34) 42686 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 201.667-20 chr19 11802415 11802748 + 1.16667 NA intron (NM_152356, intron 1 of 2) L1MB2|LINE|L1 4058 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 175-22 chr18 43184559 43184868 + 1.16667 NA Intergenic Intergenic -69021 NM_001272077 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 174.167-40 chr7 111487671 111487933 + 1.16667 NA intron (NM_032549, intron 2 of 5) intron (NM_032549, intron 2 of 5) 74489 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 200.167-24 chr6 119978517 119978731 + 1.16667 NA Intergenic Intergenic -36555 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 402.168 chr6 144284219 144284610 + 1.16667 NA Intergenic Intergenic -7323 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 176.667-8 chr11 38477421 38477670 + 1.16667 NA Intergenic Intergenic 168811 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 376.001-2 chr8 5265285 5265725 + 1.16667 NA Intergenic ERVL-B4-int|LTR|ERVL -270591 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 211.667-25 chr21 25069128 25069463 + 1.16667 NA Intergenic L1ME2|LINE|L1 228745 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 237.167-21 chr6 157680544 157680888 + 1.16667 NA Intergenic Intergenic -142530 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 216.667-39 chr5 41647685 41648024 + 1.16667 NA Intergenic Intergenic -137253 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 353.167-8 chr7 82412719 82413075 + 1.16667 NA intron (NM_000722, intron 1 of 38) intron (NM_000722, intron 1 of 38) 30880 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 215-41 chr8 125236754 125237123 + 1.16667 NA intron (NM_001349486, intron 5 of 7) L2c|LINE|L2 145078 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 184.333-46 chr9 120756227 120756424 + 1.16667 NA TTS (NM_012164) TTS (NM_012164) 37091 NM_012164 26190 Hs.494985 NM_012164 ENSG00000119402 FBXW2 FBW2|Fwd2|Md6 F-box and WD repeat domain containing 2 protein-coding 252.167-22 chr7 145302930 145303253 + 1.16667 NA Intergenic LTR33|LTR|ERVL -467038 NM_001350886 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 243.667-14 chr14 69579998 69580459 + 1.16667 NA Intergenic LTR41B|LTR|ERVL -5357 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 333.834-4 chr20 6001801 6002297 + 1.16667 NA intron (NR_110101, intron 1 of 4) 7SLRNA|srpRNA|srpRNA 3772 NR_110101 101929225 Hs.635771 NR_110101 ENSG00000278719 MCM8-AS1 - MCM8 antisense RNA 1 ncRNA 270.334-3 chr1 201447729 201448227 + 1.16667 NA Intergenic MIR3|SINE|MIR 21193 NR_073080 23612 Hs.153944 NM_012396 ENSG00000174307 PHLDA3 TIH1 pleckstrin homology like domain family A member 3 protein-coding 278.334-6 chr16 29710435 29710847 + 1.16667 NA Intergenic HUERS-P3b-int|LTR|ERV1 31461 NM_014298 23475 Hs.513484 NM_014298 ENSG00000103485 QPRT HEL-S-90n|QPRTase quinolinate phosphoribosyltransferase protein-coding 242.333-16 chr3 146678122 146678528 + 1.16667 NA Intergenic LTR33B|LTR|ERVL -72109 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 212.834-5 chr3 117440127 117440437 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR 250643 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 271.167-11 chr18 24514438 24514740 + 1.16667 NA Intergenic MLT1I|LTR|ERVL-MaLR 53952 NM_021624 59340 Hs.287388 NM_021624 ENSG00000134489 HRH4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 228.501-2 chr18 68520468 68520701 + 1.16667 NA Intergenic Intergenic 194524 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 187-44 chr8 14645498 14645793 + 1.16667 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 207865 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 263.167-4 chr12 7188973 7189385 + 1.16667 NA promoter-TSS (NM_001351139) promoter-TSS (NM_001351139) 16 NM_001351131 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 203.167-21 chr3 16750458 16750856 + 1.16667 NA Intergenic L1MA1|LINE|L1 -134298 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 165.167-17 chr17 42423163 42423520 + 1.16667 NA promoter-TSS (NM_012232) promoter-TSS (NM_012232) -85 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 CAVIN1 CAVIN|CGL4|FKSG13|PTRF|cavin-1 caveolae associated protein 1 protein-coding 164-2 chr1 119301843 119302139 + 1.16667 NA Intergenic Intergenic -26261 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 347.667-12 chr6 14734342 14734865 + 1.16667 NA Intergenic Intergenic -449149 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 192.167-14 chr15 68396268 68396502 + 1.16667 NA intron (NM_001004439, intron 2 of 29) L1MEg|LINE|L1 35778 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 199.167-18 chr20 55114493 55114798 + 1.16667 NA Intergenic Arthur1B|DNA|hAT-Tip100 -308398 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 308.667-14 chr5 43484340 43484652 + 1.16667 NA promoter-TSS (NM_022483) promoter-TSS (NM_022483) -631 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 264.834-5 chr22 19402428 19402750 + 1.16667 NA intron (NM_003325, intron 5 of 24) L1M5|LINE|L1 29144 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 297.833-2 chr10 125645970 125646477 + 1.16667 NA intron (NM_001318133, intron 3 of 3) AluJb|SINE|Alu 36940 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 241-8 chr16 81095349 81095697 + 1.16667 NA intron (NM_004483, intron 1 of 4) AluSc8|SINE|Alu 852 NM_004483 2653 Hs.546256 NM_004483 ENSG00000140905 GCSH GCE|NKH glycine cleavage system protein H protein-coding 361-4 chr10 21527993 21528380 + 1.16667 NA Intergenic Intergenic -2504 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 182-27 chr20 59886764 59887031 + 1.16667 NA intron (NM_014258, intron 24 of 44) intron (NM_014258, intron 24 of 44) 46740 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 227.334-8 chr12 61313615 61313810 + 1.16667 NA Intergenic Intergenic 879127 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 238-16 chr17 54829314 54829681 + 1.16667 NA Intergenic Intergenic -71194 NM_001321175 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 328.333-4 chr1 219479987 219480447 + 1.16667 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 77107 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 301.167-7 chr17 53150011 53150339 + 1.16667 NA Intergenic Intergenic 164670 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 443.334-2 chr14 73568901 73569503 + 1.16667 NA 5' UTR (NM_001364178, exon 1 of 3) 5' UTR (NM_001364178, exon 1 of 3) 143 NM_001364177 10965 Hs.446685 NM_006821 ENSG00000119673 ACOT2 CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128 acyl-CoA thioesterase 2 protein-coding 316.167-4 chr12 127280865 127281444 + 1.16667 NA intron (NR_146537, intron 2 of 3) intron (NR_146537, intron 2 of 3) 3129 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 224.834-7 chr2 195262460 195262808 + 1.16667 NA Intergenic AluSx1|SINE|Alu -394324 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 206-31 chr5 149002135 149002513 + 1.16667 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 60085 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 376.834-3 chr14 51957726 51958108 + 1.16667 NA intron (NM_001243773, intron 3 of 3) L1MC4|LINE|L1 -31629 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 329.5-21 chr8 99798415 99798959 + 1.16667 NA intron (NM_017890, intron 43 of 61) intron (NM_017890, intron 43 of 61) 95020 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 225.833-6 chr11 46248807 46249227 + 1.16667 NA Intergenic Intergenic -28645 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 313.334-3 chr12 50370550 50371028 + 1.16667 NA intron (NM_001145475, intron 1 of 7) L1MB2|LINE|L1 25820 NM_001145475 121006 Hs.133187 NM_001145475 ENSG00000185958 FAM186A - family with sequence similarity 186 member A protein-coding 181.333-16 chr19 6608139 6608463 + 1.16667 NA Intergenic AluSq2|SINE|Alu -17151 NM_001330332 970 Hs.501497 NM_001252 ENSG00000125726 CD70 CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A CD70 molecule protein-coding 262.001-3 chr5 23605152 23605446 + 1.16667 NA Intergenic Intergenic 97644 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 188-43 chr6 27591772 27592056 + 1.16667 NA Intergenic Intergenic -102121 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 310.5-3 chr1 193019700 193020142 + 1.16667 NA TTS (NR_037607) TTS (NR_037607) 37494 NR_135615 107397392 NR_135615 ENSG00000238754 SCARNA18B - small Cajal body-specific RNA 18B ncRNA 193.667-11 chr10 74897843 74898020 + 1.16667 NA intron (NM_001370144, intron 3 of 15) intron (NM_001370144, intron 3 of 15) -14855 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 232.167 chr1 191853778 191854089 + 1.16667 NA Intergenic L2a|LINE|L2 -304529 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 189.167-21 chr18 72450163 72450382 + 1.16667 NA Intergenic Intergenic 94070 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 248.501 chr19 5275623 5275847 + 1.16667 NA intron (NM_002850, intron 2 of 37) AluSx1|SINE|Alu 65077 NM_002850 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase receptor type S protein-coding 266.834-4 chr5 92040596 92040923 + 1.16667 NA Intergenic Intergenic -657442 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 236.167-8 chr2 44393318 44393629 + 1.16667 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 31526 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 212-48 chr8 130416034 130416362 + 1.16667 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 27462 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 226.167-18 chr3 45279455 45279749 + 1.16667 NA Intergenic L1MA4|LINE|L1 -53315 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 288.667-12 chr2 57229038 57229365 + 1.16667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -678450 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 285.167-12 chr22 22148696 22149055 + 1.16667 NA Intergenic Intergenic -95911 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 258.667-20 chr3 146691877 146692244 + 1.16667 NA Intergenic L1MA6|LINE|L1 -85844 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 478.667 chr2 216665105 216665758 + 1.16667 NA TTS (NM_001313992) TTS (NM_001313992) 5864 NM_001313990 3485 Hs.438102 NM_000597 ENSG00000115457 IGFBP2 IBP2|IGF-BP53 insulin like growth factor binding protein 2 protein-coding 278.334-3 chr10 55262940 55263217 + 1.16667 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -335964 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 218.167-3 chr10 116794496 116794940 + 1.16667 NA intron (NM_001330164, intron 2 of 12) AluSz|SINE|Alu 32850 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 284.167-14 chr6 64250127 64250402 + 1.16667 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 443428 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 300.834-12 chr4 47048484 47048846 + 1.16667 NA intron (NM_000812, intron 3 of 8) MIR|SINE|MIR 17098 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 342.333 chr1 44707849 44708477 + 1.16667 NA intron (NM_001145636, intron 6 of 11) intron (NM_001145636, intron 6 of 11) 13738 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 226.167-23 chr7 80049720 80049960 + 1.16667 NA Intergenic Intergenic -84991 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 277.501 chrX 107031170 107031455 + 1.16667 NA Intergenic MamGyp-int|LTR|Gypsy -31100 NM_024657 79710 Hs.496544 NM_024657 ENSG00000133131 MORC4 ZCW4|ZCWCC2|dJ75H8.2 MORC family CW-type zinc finger 4 protein-coding 279.5-19 chr4 47686672 47686938 + 1.16667 NA intron (NM_006587, intron 6 of 21) intron (NM_006587, intron 6 of 21) 34136 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 300.667-2 chr1 172761576 172761958 + 1.16667 NA Intergenic Intergenic 102664 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 221.001-5 chr7 40833022 40833279 + 1.16667 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 146789 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 411.667-4 chr15 61142183 61142817 + 1.16667 NA intron (NM_134261, intron 1 of 10) L1M5|LINE|L1 86802 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 207.5-5 chr1 216195830 216196132 + 1.16667 NA intron (NM_206933, intron 19 of 71) intron (NM_206933, intron 19 of 71) 123516 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 291-11 chr14 48852674 48853051 + 1.16667 NA Intergenic MER115|DNA|hAT-Tip100 733518 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 348.667-10 chr5 129911813 129912190 + 1.16667 NA intron (NM_175856, intron 2 of 2) AluY|SINE|Alu 7536 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 315.167-5 chr12 73496475 73497075 + 1.16667 NA Intergenic MLT1-int|LTR|ERVL-MaLR 337585 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 180.167-18 chr5 122697833 122698033 + 1.16667 NA intron (NR_109881, intron 7 of 11) L1ME3G|LINE|L1 32627 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 329.167-7 chr13 112062878 112063229 + 1.16667 NA intron (NR_120392, intron 1 of 3) CpG -4096 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 233.667-15 chr16 3962106 3962456 + 1.16667 NA TTS (NM_001116) TTS (NM_001116) -11837 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 295.667-7 chr14 23910773 23911166 + 1.16667 NA Intergenic Intergenic -42801 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 222.667-37 chr6 138158503 138158770 + 1.16667 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat -3303 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 205.834-7 chr5 170184239 170184471 + 1.16667 NA Intergenic Intergenic 14786 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 237.333-3 chr10 67699190 67699565 + 1.16667 NA Intergenic L2a|LINE|L2 -3182 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 228.334-8 chr2 151291608 151291909 + 1.16667 NA Intergenic Intergenic -2090 NM_004688 9111 Hs.54483 NM_004688 ENSG00000123609 NMI - N-myc and STAT interactor protein-coding 299.834-11 chr5 172208054 172208527 + 1.16667 NA Intergenic L1MC5a|LINE|L1 14118 NM_001171183 285588 Hs.716824 NM_001171183 ENSG00000214360 EFCAB9 - EF-hand calcium binding domain 9 protein-coding 192.667 chr1 44572030 44572431 + 1.16667 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 26737 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 388-6 chr17 68593504 68593996 + 1.16667 NA intron (NM_001243746, intron 1 of 11) intron (NM_001243746, intron 1 of 11) 7617 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 208-21 chr18 43358960 43359190 + 1.16667 NA Intergenic HERV4_I-int|LTR|ERV1 -81585 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 247-23 chr22 29604784 29605113 + 1.16667 NA intron (NM_181831, intron 1 of 14) L1MB8|LINE|L1 1315 NM_181825 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 253-19 chr3 87264217 87264626 + 1.16667 NA exon (NM_000306, exon 3 of 6) exon (NM_000306, exon 3 of 6) 12163 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 206.5-55 chr7 157564671 157564913 + 1.16667 NA intron (NM_130843, intron 20 of 21) L1MB3|LINE|L1 9630 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 236.667-33 chr7 148966883 148967335 + 1.16667 NA Intergenic Intergenic 3794 NR_004393 6086 NR_004393 ENSG00000252316 RNY4 HY4|Y4 RNA, Ro60-associated Y4 ncRNA 262.167-12 chr7 25851823 25852302 + 1.16667 NA Intergenic MIR3|SINE|MIR -61943 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 219.334-5 chr18 31556582 31556805 + 1.16667 NA non-coding (NR_045216, exon 1 of 6) non-coding (NR_045216, exon 1 of 6) 218 NR_045216 100652770 Hs.562766 NR_045216 ENSG00000264859 DSG2-AS1 - DSG2 antisense RNA 1 ncRNA 229.167-2 chr1 109172550 109172929 + 1.16667 NA intron (NM_001284352, intron 4 of 20) intron (NM_001284352, intron 4 of 20) -13810 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 255-11 chr11 78069550 78069865 + 1.16667 NA 3' UTR (NM_004549, exon 3 of 3) 3' UTR (NM_004549, exon 3 of 3) 5846 NM_003251 7069 Hs.591969 NM_003251 ENSG00000151365 THRSP LPGP1|Lpgp|S14|SPOT14|THRP thyroid hormone responsive protein-coding 172.834-6 chrX 120486241 120486413 + 1.16667 NA Intergenic Intergenic -16978 NM_013995 3920 Hs.496684 NM_002294 ENSG00000005893 LAMP2 CD107b|LAMP-2|LAMPB|LGP-96|LGP110 lysosomal associated membrane protein 2 protein-coding 260.667-12 chr14 61661784 61662078 + 1.16667 NA Intergenic Intergenic -33582 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 209.5-12 chr13 110397144 110397489 + 1.16667 NA intron (NM_001846, intron 4 of 47) intron (NM_001846, intron 4 of 47) 56358 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 182.167-14 chr2 162092168 162092589 + 1.16667 NA Intergenic L2c|LINE|L2 17521 NR_147697 100131604 NR_147697 LOC100131604 - uncharacterized LOC100131604 ncRNA 207.834-7 chr3 149387104 149387395 + 1.16667 NA TTS (NR_046650) TTS (NR_046650) 9471 NR_109809 100874091 Hs.549633 NR_046650 ENSG00000240541 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 291 chr1 70509885 70510435 + 1.16667 NA Intergenic Intergenic 98892 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 316.5-17 chr2 178110432 178110870 + 1.16667 NA Intergenic MIRb|SINE|MIR -1786 NM_152945 129831 Hs.377257 NM_152945 ENSG00000155636 RBM45 DRB1|RB-1 RNA binding motif protein 45 protein-coding 341.667 chr10 22681845 22682325 + 1.16667 NA intron (NM_005028, intron 1 of 9) MER58B|DNA|hAT-Charlie 32023 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 232.833-22 chr3 57401978 57402359 + 1.16667 NA intron (NM_001366028, intron 43 of 73) intron (NM_001366028, intron 43 of 73) -109483 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 263.5-15 chr2 20813424 20813819 + 1.16667 NA intron (NM_021925, intron 1 of 6) L1ME4b|LINE|L1 9480 NM_001282720 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 304.834 chr11 72091226 72091671 + 1.16667 NA intron (NR_026886, intron 4 of 6) intron (NR_026886, intron 4 of 6) -10755 NM_006185 4926 Hs.325978 NM_006185 ENSG00000137497 NUMA1 NMP-22|NUMA nuclear mitotic apparatus protein 1 protein-coding 242.667-29 chr9 132266838 132267251 + 1.16667 NA intron (NM_001351527, intron 25 of 25) Kanga1a|DNA|TcMar-Tc2 87812 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 234.334-8 chr8 98891361 98891905 + 1.16667 NA intron (NM_001256312, intron 1 of 12) (GA)n|Simple_repeat|Simple_repeat 50977 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 196.167 chr1 205657724 205658116 + 1.16667 NA TTS (NM_033102) TTS (NM_033102) 22589 NM_033102 85414 Hs.278695 NM_033102 ENSG00000158715 SLC45A3 IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST solute carrier family 45 member 3 protein-coding 265.334-6 chr22 45267713 45268033 + 1.16667 NA Intergenic AluJo|SINE|Alu -17076 NM_001167574 7380 Hs.632787 NM_006953 ENSG00000100373 UPK3A UP3A|UPIII|UPIIIA|UPK3 uroplakin 3A protein-coding 258.667-16 chr2 121360056 121360408 + 1.16667 NA intron (NM_015282, intron 36 of 38) intron (NM_015282, intron 36 of 38) -75030 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 175.5-51 chr6 150417364 150417631 + 1.16667 NA Intergenic Intergenic 48485 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 215.334 chr1 152876077 152876366 + 1.16667 NA Intergenic Intergenic -2101 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 275.667-5 chr12 74803409 74803810 + 1.16667 NA Intergenic Intergenic 265774 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 167.5-47 chrX 19774758 19774928 + 1.16667 NA intron (NM_031892, intron 2 of 17) intron (NM_031892, intron 2 of 17) 24930 NM_001024666 30011 Hs.726365 NM_031892 ENSG00000147010 SH3KBP1 AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18 SH3 domain containing kinase binding protein 1 protein-coding 200.167 chr1 39704289 39704571 + 1.16667 NA Intergenic Intergenic -12945 NM_001282396 51440 Hs.743975 NM_016257 ENSG00000116983 HPCAL4 HLP4 hippocalcin like 4 protein-coding 234.833-13 chr16 85050977 85051391 + 1.16667 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) -12028 NM_001286565 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 373.167-11 chr8 81194852 81195480 + 1.16667 NA Intergenic Intergenic -83098 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 211.5-36 chr4 63437517 63437807 + 1.16667 NA Intergenic L1PA17|LINE|L1 971788 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 217.5-4 chr11 78113878 78114188 + 1.16667 NA intron (NM_001007027, intron 6 of 13) intron (NM_001007027, intron 6 of 13) 25593 NM_024079 79053 Hs.503368 NM_024079 ENSG00000159063 ALG8 CDG1H|PCLD3 ALG8 alpha-1,3-glucosyltransferase protein-coding 327-3 chr1 156434043 156434505 + 1.16667 NA Intergenic Intergenic -4726 NR_135263 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 174.167-49 chrX 41122435 41122618 + 1.16667 NA intron (NM_001039591, intron 1 of 44) LTR1F|LTR|ERV1 37081 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 298.5-9 chr14 71042736 71043074 + 1.16667 NA intron (NM_014982, intron 19 of 35) L1M2|LINE|L1 135446 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 216.834 chr10 52595551 52595828 + 1.16667 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -125156 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 264.334-2 chr11 4368695 4369035 + 1.16667 NA promoter-TSS (NM_001005161) promoter-TSS (NM_001005161) -479 NM_001005161 143496 Hs.447463 NM_001005161 ENSG00000221996 OR52B4 OR11-3 olfactory receptor family 52 subfamily B member 4 (gene/pseudogene) protein-coding 224.167-30 chr8 87597539 87597853 + 1.16667 NA Intergenic L1ME3B|LINE|L1 276319 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 243.834-8 chr5 14445182 14445605 + 1.16667 NA intron (NM_007118, intron 34 of 56) intron (NM_007118, intron 34 of 56) -18590 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 214.334-5 chr18 31910094 31910418 + 1.16667 NA intron (NM_014939, intron 5 of 28) intron (NM_014939, intron 5 of 28) 32872 NM_014939 22878 Hs.202001 NM_014939 ENSG00000153339 TRAPPC8 GSG1|HsT2706|KIAA1012|TRS85 trafficking protein particle complex 8 protein-coding 166.334-5 chr3 192186026 192186308 + 1.16667 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -52463 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 311-2 chr12 1310930 1311446 + 1.16667 NA intron (NR_027948, intron 15 of 19) MIR|SINE|MIR -189303 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 198.5-17 chr17 72003081 72003343 + 1.16667 NA Intergenic MER58B|DNA|hAT-Charlie 22767 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 176.667-51 chr6 159857228 159857407 + 1.16667 NA Intergenic L1M2|LINE|L1 -33671 NM_002377 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 258.833-13 chr4 54227272 54227726 + 1.16667 NA Intergenic Intergenic -1794 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 197.167-33 chr5 125616659 125616869 + 1.16667 NA Intergenic (TATATTA)n|Simple_repeat|Simple_repeat 123503 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 191-45 chr7 78057835 78058123 + 1.16667 NA intron (NM_001301128, intron 20 of 20) (TA)n|Simple_repeat|Simple_repeat 217849 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 291.5-6 chr11 56014416 56014702 + 1.16667 NA Intergenic Intergenic -15860 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 228.167-2 chr10 49408624 49408894 + 1.16667 NA Intergenic Intergenic -12670 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 187.5-38 chr7 122249935 122250162 + 1.16667 NA Intergenic MER33|DNA|hAT-Charlie -53610 NR_036484 154860 Hs.664204 NR_036484 ENSG00000230316 FEZF1-AS1 - FEZF1 antisense RNA 1 ncRNA 354.834-3 chr3 33732037 33732539 + 1.16667 NA Intergenic Intergenic -14034 NM_001365628 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 262.834-3 chr2 187478418 187479032 + 1.16667 NA exon (NM_001032281, exon 7 of 7) exon (NM_001032281, exon 7 of 7) -30473 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 255.834-6 chr5 32179888 32180177 + 1.16667 NA Intergenic AluJo|SINE|Alu -5713 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 231.834-9 chr5 43432656 43432915 + 1.16667 NA Intergenic Intergenic -20394 NM_001301874 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 170-40 chr4 78887052 78887269 + 1.16667 NA intron (NM_198892, intron 14 of 15) (TTTTAT)n|Simple_repeat|Simple_repeat 52278 NR_146463 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 362.334-4 chr3 163056496 163057303 + 1.16667 NA Intergenic LTR25-int|LTR|ERV1 246402 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 265.834-3 chr14 57130395 57130622 + 1.16667 NA Intergenic Intergenic 138397 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 163.834-3 chr4 30556007 30556370 + 1.16667 NA Intergenic Intergenic -164181 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 285.167-7 chr16 73221250 73221646 + 1.16667 NA Intergenic Intergenic -77001 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 240-15 chr12 111292967 111293280 + 1.16667 NA intron (NM_015267, intron 5 of 21) AluSx1|SINE|Alu -11019 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 188.334-4 chr19 40124485 40124734 + 1.16667 NA Intergenic Intergenic -33666 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 256.501-2 chr15 42906928 42907357 + 1.16667 NA intron (NM_173500, intron 1 of 14) L1MA4|LINE|L1 13636 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 283.667 chr1 57334546 57334858 + 1.16667 NA intron (NM_001353980, intron 4 of 5) MIR|SINE|MIR 88410 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 216.667-50 chr8 106185804 106186179 + 1.16667 NA Intergenic Intergenic -84187 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 260.667-15 chr15 75450209 75450634 + 1.16667 NA intron (NM_001145357, intron 1 of 20) intron (NM_001145357, intron 1 of 20) 1269 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 267.5-24 chr2 46643530 46643982 + 1.16667 NA Intergenic Intergenic 26541 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 462.001 chr1 22025195 22025973 + 1.16667 NA promoter-TSS (NR_023919) promoter-TSS (NR_023919) 80 NR_109762 29092 Hs.279842 NR_023918 ENSG00000218510 LINC00339 HSPC157|NCRNA00339 long intergenic non-protein coding RNA 339 ncRNA 191.333-2 chr1 32108015 32108239 + 1.16667 NA promoter-TSS (NM_012316) promoter-TSS (NM_012316) 71 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 289-13 chr18 8479217 8479570 + 1.16667 NA Intergenic MIRb|SINE|MIR -112359 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 174.5-33 chr7 104089628 104089834 + 1.16667 NA Intergenic Intergenic -100073 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 270.167-3 chr1 184678605 184678929 + 1.16667 NA Intergenic MIRb|SINE|MIR 76091 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 178.167-18 chr3 194667981 194668232 + 1.16667 NA intron (NM_018385, intron 2 of 13) L1MB8|LINE|L1 4085 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 192.167-38 chr8 96248500 96248733 + 1.16667 NA intron (NM_015942, intron 4 of 7) intron (NM_015942, intron 4 of 7) -12982 NR_045639 7381 Hs.131255 NM_006294 ENSG00000156467 UQCRB MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC ubiquinol-cytochrome c reductase binding protein protein-coding 201.501 chr10 28838486 28839052 + 1.16667 NA Intergenic Intergenic -7639 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 258.5-4 chr11 14912844 14913287 + 1.16667 NA Intergenic MER2|DNA|TcMar-Tigger -20860 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 275.334-11 chr8 87518482 87519038 + 1.16667 NA Intergenic Intergenic 355255 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 365.667-11 chr7 42503676 42504050 + 1.16667 NA Intergenic L1ME3|LINE|L1 202584 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 270.834-6 chr20 41023889 41024331 + 1.16667 NA non-coding (NR_145524, exon 4 of 4) non-coding (NR_145524, exon 4 of 4) -4712 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 376.834-6 chr7 146225648 146226169 + 1.16667 NA Intergenic Intergenic -548363 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 313.167-16 chr8 121686854 121687871 + 1.16667 NA Intergenic Intergenic -45922 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 166.167-8 chr10 60101156 60101446 + 1.16667 NA intron (NM_001204403, intron 29 of 43) intron (NM_001204403, intron 29 of 43) 39715 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 294.667-18 chr2 174239843 174240152 + 1.16667 NA intron (NM_001011708, intron 1 of 9) L1MC4a|LINE|L1 8535 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 399.001-4 chrX 36866950 36867558 + 1.16667 NA Intergenic Intergenic -141105 NM_001013736 442444 Hs.535216 NM_001013736 ENSG00000198173 FAM47C - family with sequence similarity 47 member C protein-coding 213.501 chr18 61327078 61327300 + 1.16667 NA Intergenic L2a|LINE|L2 -6241 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 190.5-41 chr6 64765012 64765225 + 1.16667 NA intron (NM_001292009, intron 22 of 43) THE1D-int|LTR|ERVL-MaLR -536300 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 258.667-7 chr14 66510731 66511057 + 1.16667 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 3487 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 165.167-42 chr6 68878271 68878484 + 1.16667 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 243095 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 237.167-15 chr4 2536271 2536535 + 1.16667 NA promoter-TSS (NM_001366318) promoter-TSS (NM_001366318) -244 NM_001366318 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 181.667-8 chr10 93076813 93077068 + 1.16667 NA intron (NM_057157, intron 6 of 6) intron (NM_057157, intron 6 of 6) 3047 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 387.168 chr10 91205523 91205946 + 1.16667 NA intron (NM_001257101, intron 1 of 9) AluSz6|SINE|Alu -14417 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 297-27 chrX 47093434 47093862 + 1.16667 NA TTS (NM_004683) TTS (NM_004683) 15205 NM_152869 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 270.834-4 chr2 38541601 38541876 + 1.16667 NA Intergenic Intergenic -25998 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 305.5-19 chr8 85837483 85838004 + 1.16667 NA Intergenic MER20|DNA|hAT-Charlie -9801 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 190.667-21 chr15 55902682 55903004 + 1.16667 NA intron (NM_001329212, intron 5 of 28) intron (NM_001329212, intron 5 of 28) 14288 NM_001284340 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 194.334-4 chr2 53948282 53948540 + 1.16667 NA intron (NM_014614, intron 3 of 46) intron (NM_014614, intron 3 of 46) 22582 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 223-30 chr22 26246569 26246817 + 1.16667 NA intron (NM_001184776, intron 1 of 14) MIRb|SINE|MIR 77219 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 207.834-3 chr2 25232959 25233152 + 1.16667 NA TTS (NM_175629) TTS (NM_175629) 19076 NM_001320893 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 233.667-23 chr4 59869365 59869682 + 1.16667 NA Intergenic Intergenic 855950 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 331.001-3 chr2 58542714 58543031 + 1.16667 NA intron (NR_033873, intron 1 of 13) MER58B|DNA|hAT-Charlie 22119 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 171.667-41 chr3 118000005 118000278 + 1.16667 NA Intergenic MER20|DNA|hAT-Charlie -309216 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 175.167-37 chr5 60273340 60273578 + 1.16667 NA intron (NM_001364599, intron 1 of 16) L2c|LINE|L2 99204 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 192.334-6 chr4 48366324 48366604 + 1.16667 NA intron (NM_020846, intron 1 of 7) L1MEc|LINE|L1 24935 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 213.167-12 chr19 49145840 49146048 + 1.16667 NA exon (NM_003660, exon 22 of 30) exon (NM_003660, exon 22 of 30) 9452 NM_002152 3270 Hs.436885 NM_002152 ENSG00000130528 HRC - histidine rich calcium binding protein protein-coding 239.167-3 chr1 195002509 195002966 + 1.16667 NA Intergenic Intergenic 1085978 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 230-9 chr11 11960348 11960609 + 1.16667 NA Intergenic Intergenic 48161 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 305.334 chr1 101515542 101515942 + 1.16667 NA Intergenic L1MA4|LINE|L1 191905 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 228-22 chr17 69815416 69815953 + 1.16667 NA intron (NR_109972, intron 3 of 4) L1MB1|LINE|L1 -146023 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 222.334-8 chr8 110598824 110599114 + 1.16667 NA Intergenic L1PA16|LINE|L1 428464 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 395.333-4 chr10 13440717 13441320 + 1.16667 NA TTS (NM_001100912) TTS (NM_001100912) 61958 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 232.667-6 chr10 6924097 6924379 + 1.16667 NA Intergenic Intergenic 144640 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 285.167-17 chr8 119364857 119365126 + 1.16667 NA Intergenic MLT1J2|LTR|ERVL-MaLR 39820 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 288.5-22 chr4 120090147 120090604 + 1.16667 NA Intergenic Intergenic -23527 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 319.834-4 chr20 38207625 38208103 + 1.16667 NA Intergenic L1MB7|LINE|L1 -41356 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 196.834 chr1 100641452 100641839 + 1.16667 NA intron (NR_038914, intron 2 of 4) L1MB3|LINE|L1 5359 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 443.501-2 chr4 154982390 154982932 + 1.16667 NA Intergenic Intergenic 201156 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 215.667-9 chr11 83070460 83070661 + 1.16667 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) 902 NM_001286061 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 299.834-9 chr3 141011423 141011738 + 1.16667 NA Intergenic MIRb|SINE|MIR -39767 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 220.167-12 chr12 90854228 90854620 + 1.16667 NA Intergenic Intergenic -63599 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 294.667-19 chr3 132030852 132031202 + 1.16667 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 4415 NM_130808 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 221.001-4 chr3 154380483 154380706 + 1.16667 NA intron (NM_001038705, intron 3 of 3) AluJo|SINE|Alu 49596 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 421.333-5 chr2 222950379 222951143 + 1.16667 NA Intergenic AluJr4|SINE|Alu 89725 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 260.667-43 chr7 26942323 26942642 + 1.16667 NA Intergenic MER58B|DNA|hAT-Charlie -77892 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 355.334-10 chr9 87027386 87027718 + 1.16667 NA intron (NR_027471, intron 1 of 1) L2c|LINE|L2 14574 NR_027471 440173 Hs.127361 NR_027471 ENSG00000269994 LOC440173 - uncharacterized LOC440173 ncRNA 225-20 chr2 237165152 237165583 + 1.16667 NA Intergenic Intergenic 79478 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 223.5-4 chr10 51532353 51532657 + 1.16667 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 167090 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 394.001-8 chr8 136615142 136615867 + 1.16667 NA intron (NR_147196, intron 2 of 5) ERV3-16A3_I-int|LTR|ERVL 84706 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 183.667-24 chr18 66793941 66794200 + 1.16667 NA Intergenic L1M5|LINE|L1 -189980 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 192.333-26 chr2 17525693 17525986 + 1.16667 NA intron (NM_001321233, intron 1 of 6) intron (NM_001321233, intron 1 of 6) 4575 NM_001321233 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 227.334-4 chr11 62109016 62109311 + 1.16667 NA Intergenic Intergenic -14848 NM_020238 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 205.834 chr1 41742718 41742903 + 1.16667 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 176112 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 200.667-28 chr2 181958702 181959012 + 1.16667 NA intron (NR_048567, intron 1 of 4) L1ME3A|LINE|L1 4616 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 169.167-24 chr4 55347610 55347832 + 1.16667 NA intron (NM_024592, intron 1 of 4) intron (NM_024592, intron 1 of 4) 1479 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 216.334-5 chr4 59242069 59242407 + 1.16667 NA Intergenic L1M3|LINE|L1 228665 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 257.667-18 chr4 172200526 172200934 + 1.16667 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -387123 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 233.667-14 chr15 81217297 81217846 + 1.16667 NA intron (NM_001352686, intron 1 of 18) L1M5|LINE|L1 18095 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 168.167-4 chr11 20098774 20098967 + 1.16667 NA intron (NM_182964, intron 31 of 37) MLT1K|LTR|ERVL-MaLR -49567 NR_046672 100874014 Hs.557916 NR_046672 ENSG00000254453 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 290.5-11 chr19 46514237 46514664 + 1.16667 NA intron (NM_001205281, intron 3 of 3) intron (NM_001205281, intron 3 of 3) -18583 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 474.334-4 chr12 56877471 56878020 + 1.16667 NA Intergenic MLT1K|LTR|ERVL-MaLR 56663 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 359.667-2 chr18 20985491 20985841 + 1.16667 NA intron (NM_005406, intron 19 of 32) L2c|LINE|L2 126147 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 203.001 chr10 72338064 72338447 + 1.16667 NA exon (NM_017626, exon 6 of 9) exon (NM_017626, exon 6 of 9) 16664 NR_157570 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 462.167-3 chr7 45123890 45124491 + 1.16667 NA Intergenic Intergenic -12443 NM_199122 9238 Hs.231411 NM_004749 ENSG00000136270 TBRG4 CPR2|FASTKD4 transforming growth factor beta regulator 4 protein-coding 175.167-12 chr14 51392421 51392907 + 1.16667 NA intron (NR_146549, intron 3 of 3) intron (NR_146549, intron 3 of 3) 4471 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 164.5-44 chr5 115748512 115748777 + 1.16667 NA Intergenic Intergenic 68013 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 235.834-2 chr13 71000574 71000884 + 1.16667 NA Intergenic Intergenic -14412 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 332.833-10 chr20 59378330 59378782 + 1.16667 NA Intergenic L3b|LINE|CR1 77945 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 274.834-3 chr16 66275785 66276061 + 1.16667 NA Intergenic L1MB2|LINE|L1 -90768 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 166.833-15 chr2 177033321 177033579 + 1.16667 NA Intergenic Intergenic 178961 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 268.834-7 chr7 4559209 4559578 + 1.16667 NA Intergenic AluSq2|SINE|Alu -122902 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 244.834 chr2 73658233 73658561 + 1.16667 NA intron (NR_003683, intron 1 of 6) L1MB7|LINE|L1 13478 NR_003683 200420 Hs.739204 NM_145300 ENSG00000163016 ALMS1P1 ALMS1L|ALMS1P ALMS1 pseudogene 1 pseudo 278.667-3 chr1 210183512 210183890 + 1.16667 NA Intergenic Intergenic -49095 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 229.334-12 chr8 119070219 119070434 + 1.16667 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -1544 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 368.667-8 chr18 54566573 54567033 + 1.16667 NA Intergenic Intergenic -20956 NM_001307955 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 188.667-34 chr3 191172172 191172385 + 1.16667 NA Intergenic Intergenic -26963 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 240.167-15 chr3 145042731 145043034 + 1.16667 NA Intergenic L1MA9|LINE|L1 1026303 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 190-31 chr2 102954486 102954780 + 1.16667 NA Intergenic Intergenic 29796 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 181.667-44 chr7 17696571 17696772 + 1.16667 NA Intergenic Intergenic -137762 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 309.834-4 chr17 69328948 69329261 + 1.16667 NA Intergenic Intergenic -1971 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 249.667-16 chr16 85712749 85713066 + 1.16667 NA intron (NR_161452, intron 2 of 4) MER77|LTR|ERVL -23953 NM_016095 51659 Hs.433180 NM_016095 ENSG00000131153 GINS2 HSPC037|PSF2|Pfs2 GINS complex subunit 2 protein-coding 267.667-4 chr1 158423466 158423823 + 1.16667 NA Intergenic Intergenic -2778 NM_001004476 391107 Hs.626815 NM_001004476 ENSG00000180708 OR10K2 OR1-4 olfactory receptor family 10 subfamily K member 2 protein-coding 178.334-9 chr9 73916438 73916644 + 1.16667 NA Intergenic HAL1ME|LINE|L1 -454990 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 295.334-3 chr16 67846486 67846872 + 1.16667 NA promoter-TSS (NM_005796) promoter-TSS (NM_005796) -254 NM_001322039 10204 Hs.356630 NM_005796 ENSG00000102898 NUTF2 NTF-2|NTF2|PP15 nuclear transport factor 2 protein-coding 233.667-33 chr7 42884314 42884627 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 27373 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 257.167-5 chr17 28763111 28763484 + 1.16667 NA intron (NM_001288631, intron 2 of 3) intron (NM_001288631, intron 2 of 3) 19286 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding 209.667-19 chr2 188969875 188970143 + 1.16667 NA Intergenic Intergenic -4364 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 236.334-4 chr14 64718118 64718451 + 1.16667 NA intron (NM_001308147, intron 1 of 16) L2c|LINE|L2 13860 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 214.5-22 chr20 48447822 48448073 + 1.16667 NA Intergenic L2|LINE|L2 88036 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 200.334-4 chr19 49965491 49965773 + 1.16667 NA Intergenic L1PBb|LINE|L1 -4032 NR_145574 400709 Hs.568076 NM_001348364 SIGLEC16 SIGLECP16|Siglec-P16 sialic acid binding Ig like lectin 16 (gene/pseudogene) protein-coding 191.5-38 chr5 6015894 6016074 + 1.16667 NA Intergenic L1MC|LINE|L1 321308 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 236.834-8 chr7 111514560 111514875 + 1.16667 NA intron (NM_032549, intron 2 of 5) L1MC5|LINE|L1 47574 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 233.5-11 chr16 72066817 72067187 + 1.16667 NA intron (NM_020995, intron 1 of 4) HERVI-int|LTR|ERV1 3776 NM_020995 3250 Hs.655361 NM_020995 ENSG00000261701 HPR A-259H10.2|HP haptoglobin-related protein protein-coding 318.834-12 chr8 128342185 128342543 + 1.16667 NA Intergenic Intergenic 192248 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 322.334 chr10 19535998 19536450 + 1.16667 NA intron (NM_001142308, intron 32 of 39) LTR33A|LTR|ERVL 192326 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 359.001-3 chr2 71281669 71282138 + 1.16667 NA Intergenic HAL1|LINE|L1 -49852 NM_001252612 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 219.834 chr1 13746113 13746464 + 1.16667 NA intron (NM_012231, intron 5 of 9) intron (NM_012231, intron 5 of 9) -3127 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 247.167-7 chr16 61177259 61177507 + 1.16667 NA Intergenic Intergenic -121617 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 320.001 chr15 95996554 95996945 + 1.16667 NA Intergenic Intergenic 131092 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 397-11 chr3 57801882 57802410 + 1.16667 NA intron (NM_001304420, intron 1 of 21) L1ME1|LINE|L1 44890 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 164.667-40 chr5 4730376 4730551 + 1.16667 NA Intergenic MIR|SINE|MIR -43018 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 188.334 chr1 104301405 104301606 + 1.16667 NA Intergenic L1MA2|LINE|L1 228482 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 190.167-17 chr3 142844302 142844523 + 1.16667 NA intron (NM_013363, intron 3 of 8) L1ME2z|LINE|L1 44671 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 191.334-8 chr2 17702240 17702635 + 1.16667 NA intron (NM_024624, intron 18 of 26) Charlie1b|DNA|hAT-Charlie 51373 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 313.001-6 chr9 101868263 101868620 + 1.16667 NA Intergenic Intergenic -129861 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 172.167-6 chr11 93916230 93916407 + 1.16667 NA Intergenic L1M4|LINE|L1 -65700 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 278.501-4 chr5 167565820 167566367 + 1.16667 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -7566 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 164.5-16 chr15 36030343 36030558 + 1.16667 NA Intergenic Intergenic 103594 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 757.835 chr10 59234633 59235421 + 1.16667 NA intron (NM_001143774, intron 2 of 4) LTR37A|LTR|ERV1 57560 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 410.667-6 chr5 114447088 114447969 + 1.16667 NA non-coding (NR_130785, exon 13 of 13) non-coding (NR_130785, exon 13 of 13) 14017 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 354.5-2 chr10 74290505 74291077 + 1.16667 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 114028 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 179.834-10 chr8 119177110 119177306 + 1.16667 NA Intergenic MIRb|SINE|MIR -31155 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 353.334-8 chr6 52063205 52063760 + 1.16667 NA intron (NM_138694, intron 13 of 66) MIR|SINE|MIR 24131 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 256.5-8 chr11 106229136 106229555 + 1.16667 NA Intergenic HERVI-int|LTR|ERV1 -20674 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 203.667-60 chr9 135085584 135085799 + 1.16667 NA intron (NM_014279, intron 1 of 5) intron (NM_014279, intron 1 of 5) -1569 NM_001282612 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 296.333-25 chr9 131169609 131170073 + 1.16667 NA intron (NM_001318324, intron 21 of 35) MER58A|DNA|hAT-Charlie -20298 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 225.5-33 chr9 82370116 82370429 + 1.16667 NA Intergenic Intergenic 381500 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 197-38 chr8 67686441 67686691 + 1.16667 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 59794 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 207.834-9 chr6 54801667 54801886 + 1.16667 NA Intergenic Intergenic -44995 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 234.333-3 chr1 172449769 172450331 + 1.16667 NA intron (NM_139240, intron 3 of 6) intron (NM_139240, intron 3 of 6) -2843 NM_001300760 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 172.167-25 chr6 54019843 54020050 + 1.16667 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) 976 NM_001281746 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 237.833-17 chr8 37090771 37091033 + 1.16667 NA Intergenic Intergenic 306528 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 258.833-19 chr8 119203570 119204013 + 1.16667 NA Intergenic L1MEc|LINE|L1 -4572 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 259.334-11 chrX 155114084 155114519 + 1.16667 NA intron (NM_024332, intron 8 of 11) L1MB2|LINE|L1 42881 NM_001242640 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 235.001-3 chr14 92470127 92470345 + 1.16667 NA intron (NM_153647, intron 13 of 17) MER5A|DNA|hAT-Charlie -43545 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 247.667-26 chr3 72701300 72701695 + 1.16667 NA Intergenic MLT1B|LTR|ERVL-MaLR -37248 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 194.334-6 chr5 18837759 18837958 + 1.16667 NA Intergenic Intergenic 1030584 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 214.334-8 chr5 63130081 63130294 + 1.16667 NA Intergenic Intergenic 551368 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 170.167-35 chr4 162310743 162311147 + 1.16667 NA Intergenic L1MEd|LINE|L1 -146911 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 299.001-3 chr8 131320855 131321231 + 1.16667 NA Intergenic Intergenic -280134 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 235.501 chr14 76427490 76427972 + 1.16667 NA intron (NM_004452, intron 3 of 10) MIR|SINE|MIR 56384 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 220.167-18 chr19 4139800 4140133 + 1.16667 NA Intergenic L2a|LINE|L2 -13665 NM_001271997 84699 Hs.247744 NM_032607 ENSG00000060566 CREB3L3 CREB-H|CREBH|HYST1481 cAMP responsive element binding protein 3 like 3 protein-coding 191-6 chr1 234146154 234146443 + 1.16667 NA intron (NM_173508, intron 2 of 7) L1MEh|LINE|L1 -67913 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 169.667-3 chr1 112999091 112999398 + 1.16667 NA Intergenic Intergenic 42829 NR_103744 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 206.001-2 chr7 52532861 52533075 + 1.16667 NA Intergenic Intergenic -502665 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 195-31 chr3 123811546 123811900 + 1.16667 NA intron (NM_001321309, intron 3 of 32) intron (NM_001321309, intron 3 of 32) 72609 NM_053026 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 244.5-13 chr17 75205395 75205677 + 1.16667 NA promoter-TSS (NM_001330472) promoter-TSS (NM_001330472) 86 NM_001303276 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 317.834 chr14 71575225 71575605 + 1.16667 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -10883 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 195.167-24 chr19 31901682 31902081 + 1.16667 NA Intergenic HERV16-int|LTR|ERVL -123981 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 364.168 chr12 54718401 54718754 + 1.16667 NA Intergenic Intergenic -70212 NM_001300854 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 284.667-15 chr8 4096831 4097162 + 1.16667 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 897918 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 516.333 chr10 104274637 104275537 + 1.16667 NA promoter-TSS (NM_001191015) promoter-TSS (NM_001191015) -79 NM_001191015 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 336-15 chr5 42064817 42065315 + 1.16667 NA Intergenic MER44B|DNA|TcMar-Tigger 110279 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 207-34 chr8 129477111 129477546 + 1.16667 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 6814 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 281.167-7 chr14 52197742 52198258 + 1.16667 NA Intergenic L1MC2|LINE|L1 -69698 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 219.834-6 chr1 203859673 203859885 + 1.16667 NA Intergenic AluSx4|SINE|Alu -1820 NR_130746 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 272.167-3 chr11 94601705 94602111 + 1.16667 NA exon (NM_152431, exon 12 of 20) exon (NM_152431, exon 12 of 20) 34540 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 260.834-3 chr4 64114116 64114398 + 1.16667 NA Intergenic Intergenic 295193 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 175.667-47 chr6 141072167 141072571 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR 388555 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 310.5-9 chr2 148659904 148660443 + 1.16667 NA intron (NM_015630, intron 1 of 13) intron (NM_015630, intron 1 of 13) 15422 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 379.667-5 chr5 40798293 40798798 + 1.16667 NA promoter-TSS (NM_001355037) promoter-TSS (NM_001355037) -350 NM_206907 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 222.5-18 chr17 28158683 28158957 + 1.16667 NA intron (NM_016231, intron 3 of 10) intron (NM_016231, intron 3 of 10) -67743 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 245.667-14 chr21 30136527 30136856 + 1.16667 NA Intergenic Intergenic 30114 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 196.333-40 chr6 38869252 38869497 + 1.16667 NA intron (NM_001371, intron 47 of 91) intron (NM_001371, intron 47 of 91) 83733 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 216.667-49 chr8 62890924 62891175 + 1.16667 NA intron (NM_001304533, intron 4 of 6) MLT2A2|LTR|ERVL -86812 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 205.667-15 chr14 47439878 47440318 + 1.16667 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -96852 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 193.667-33 chr21 18382634 18382884 + 1.16667 NA intron (NM_002772, intron 4 of 24) MER46C|DNA|TcMar-Tigger 21026 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 220.334-3 chr15 26144788 26145050 + 1.16667 NA Intergenic L1ME3A|LINE|L1 29106 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 306.834-12 chr7 83365694 83366144 + 1.16667 NA 3' UTR (NM_012431, exon 17 of 17) 3' UTR (NM_012431, exon 17 of 17) -203035 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 239.667-25 chr2 184286901 184287146 + 1.16667 NA Intergenic Intergenic -91952 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 183-45 chr8 65787397 65787698 + 1.16667 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) 1510 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 356.834 chr15 46751167 46751525 + 1.16667 NA Intergenic L1MCa|LINE|L1 -432743 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 287.834-6 chr7 102232457 102232753 + 1.16667 NA intron (NM_001202543, intron 21 of 23) MER129|LTR?|LTR? -52536 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 215.167-4 chr10 35006237 35006523 + 1.16667 NA Intergenic Intergenic 67903 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 277.5-23 chr7 117522515 117522859 + 1.16667 NA intron (NM_000492, intron 3 of 26) intron (NM_000492, intron 3 of 26) 41989 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 291.334-6 chr3 69710301 69710605 + 1.16667 NA Intergenic Intergenic -29011 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 228.5-4 chr14 49900044 49900357 + 1.16667 NA Intergenic Intergenic 7118 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 165.5-14 chr14 72579071 72579294 + 1.16667 NA Intergenic Intergenic 62362 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 178-40 chr7 22564839 22565192 + 1.16667 NA non-coding (NR_038393, exon 2 of 4) non-coding (NR_038393, exon 2 of 4) 1678 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 489.167 chr22 37021440 37022322 + 1.16667 NA intron (NM_021126, intron 1 of 2) MIRb|SINE|MIR -1698 NM_001270483 7263 Hs.474783 NM_003312 ENSG00000128311 TST RDS thiosulfate sulfurtransferase protein-coding 190.834-8 chr3 111944024 111944223 + 1.16667 NA intron (NM_001134437, intron 8 of 17) L1ME2|LINE|L1 -34903 NM_001272069 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 201.667-18 chr18 6657329 6657641 + 1.16667 NA Intergenic Intergenic -72231 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 267.334-7 chr9 79639395 79639769 + 1.16667 NA intron (NM_001351547, intron 5 of 18) Tigger3c|DNA|TcMar-Tigger 66405 NM_001351547 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 365.668 chr1 183765420 183765801 + 1.16667 NA intron (NM_001297669, intron 3 of 18) LOR1-int|LTR|ERV1 -39510 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 226.834-2 chr11 57000690 57000974 + 1.16667 NA Intergenic HUERS-P2-int|LTR|ERV1 11918 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 231.5-27 chr3 48342460 48342836 + 1.16667 NA Intergenic Intergenic -14307 NM_001080525 646424 Hs.257687 NM_001080525 ENSG00000229453 SPINK8 - serine peptidase inhibitor, Kazal type 8 (putative) protein-coding 242.667-15 chr2 48622822 48623134 + 1.16667 NA intron (NM_001198594, intron 4 of 7) intron (NM_001198594, intron 4 of 7) 5122 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 169.334-4 chr15 76378724 76378948 + 1.16667 NA intron (NR_148227, intron 29 of 32) MLT1G|LTR|ERVL-MaLR 42063 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 307.667-10 chr19 27659474 27659933 + 1.16667 NA Intergenic LTR10E|LTR|ERV1 -133728 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 176-3 chr1 187123307 187123530 + 1.16667 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 30576 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 340.501-3 chr6 55427962 55428516 + 1.16667 NA Intergenic Intergenic 100770 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 234.834-4 chr14 59631112 59631424 + 1.16667 NA promoter-TSS (NM_206852) promoter-TSS (NM_206852) -454 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 244-41 chr9 89179445 89179832 + 1.16667 NA promoter-TSS (NM_016848) promoter-TSS (NM_016848) -820 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 262.334-8 chr15 55106936 55107231 + 1.16667 NA Intergenic MSTA-int|LTR|ERVL-MaLR 50336 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 206.5-51 chr6 150798701 150798916 + 1.16667 NA intron (NM_001029884, intron 6 of 16) AluSz|SINE|Alu -66871 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 166.667-51 chr8 37263801 37263960 + 1.16667 NA Intergenic L1MA4A|LINE|L1 230033 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 199.167-7 chr18 33262972 33263272 + 1.16667 NA intron (NM_001308126, intron 14 of 23) L1ME4a|LINE|L1 177449 NM_001371121 238.334-19 chr7 923049 923395 + 1.16667 NA intron (NM_006869, intron 3 of 10) intron (NM_006869, intron 3 of 10) -2333 NM_001284311 11033 Hs.602573 NM_006869 ENSG00000105963 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 335.667 chr1 150321182 150321554 + 1.16667 NA promoter-TSS (NR_146766) promoter-TSS (NR_146766) -100 NR_146767 9129 Hs.11776 NM_004698 ENSG00000117360 PRPF3 HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90 pre-mRNA processing factor 3 protein-coding 309-2 chr1 81559247 81559786 + 1.16667 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) -1814 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 213.167-7 chr13 88178274 88178595 + 1.16667 NA intron (NR_131919, intron 1 of 4) intron (NR_131919, intron 1 of 4) 35567 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 245.334-12 chr7 38518815 38519205 + 1.16667 NA intron (NM_001635, intron 2 of 20) MSTD|LTR|ERVL-MaLR 112363 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 219-33 chr8 17090620 17090891 + 1.16667 NA intron (NM_001349810, intron 8 of 14) intron (NM_001349810, intron 8 of 14) 63517 NM_181723 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 259.001 chr1 99704189 99704485 + 1.16667 NA 3' UTR (NM_001361041, exon 17 of 17) 3' UTR (NM_001361041, exon 17 of 17) 8616 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 215-18 chr2 32065598 32065859 + 1.16667 NA intron (NM_001363875, intron 1 of 15) intron (NM_001363875, intron 1 of 15) 2117 NM_001363823 6683 Hs.468091 NM_014946 ENSG00000021574 SPAST ADPSP|FSP2|SPG4 spastin protein-coding 222.5-32 chr6 87092803 87093117 + 1.16667 NA intron (NM_001252383, intron 1 of 4) AluJb|SINE|Alu 2146 NM_001252383 1081 Hs.119689 NM_000735 ENSG00000135346 CGA CG-ALPHA|FSHA|GPA1|GPHA1|GPHa|HCG|LHA|TSHA glycoprotein hormones, alpha polypeptide protein-coding 173.667-10 chr11 82266921 82267170 + 1.16667 NA intron (NR_120571, intron 3 of 7) ERV3-16A3_I-int|LTR|ERVL 136868 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 239.5-21 chr2 62469291 62469527 + 1.16667 NA Intergenic Intergenic 36786 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 216.5-35 chr5 45319759 45320146 + 1.16667 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 376428 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 176.5-32 chr5 129484026 129484242 + 1.16667 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -23445 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 177.5-43 chr5 110842239 110842574 + 1.16667 NA Intergenic Intergenic 103399 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 174-46 chr8 35375305 35375588 + 1.16667 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 139971 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 197.167-12 chr14 67659634 67659985 + 1.16667 NA exon (NM_006370, exon 3 of 6) exon (NM_006370, exon 3 of 6) 14823 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 226.167-19 chr4 79537848 79538250 + 1.16667 NA intron (NR_038826, intron 3 of 3) intron (NR_038826, intron 3 of 3) 45456 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 290.001-5 chr6 26527424 26527691 + 1.16667 NA TTS (NR_026790) TTS (NR_026790) 5851 NR_026790 493812 Hs.272939 NR_026790 ENSG00000228223 HCG11 CTA-14H9.3|bK14H9.3 HLA complex group 11 ncRNA 336.834 chr1 227294907 227295301 + 1.16667 NA intron (NM_001366019, intron 1 of 36) intron (NM_001366019, intron 1 of 36) 23388 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 166.667-24 chr19 46076720 46076986 + 1.16667 NA intron (NR_163177, intron 1 of 5) intron (NR_163177, intron 1 of 5) 776 NR_163175 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 405.833-3 chr2 154139906 154140396 + 1.16667 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 195757 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 179.5-26 chr20 31259942 31260131 + 1.16667 NA TTS (NM_001037730) TTS (NM_001037730) 2372 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 181.167-37 chrX 135632275 135632447 + 1.16667 NA Intergenic LTR43-int|LTR|ERV1 53733 NR_147090 644717 Hs.556140 NR_147090 SAGE2P - sarcoma antigen 2, pseudogene pseudo 250.001-2 chr3 116454170 116454391 + 1.16667 NA Intergenic MIRc|SINE|MIR -8793 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 210.5-25 chr21 34593087 34593363 + 1.16667 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) 20618 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 179.5-46 chr7 118195847 118196133 + 1.16667 NA 3' UTR (NM_016200, exon 4 of 4) 3' UTR (NM_016200, exon 4 of 4) 11826 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 163.833-10 chr14 30657740 30658015 + 1.16667 NA intron (NM_016106, intron 10 of 24) intron (NM_016106, intron 10 of 24) 35558 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 278.334-5 chr12 10151591 10151972 + 1.16667 NA Intergenic L1PA16|LINE|L1 -18818 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 350.501-3 chr6 62285949 62286359 + 1.16667 NA promoter-TSS (NM_001350622) promoter-TSS (NM_001350622) 71 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 265.667-14 chr2 222861741 222862163 + 1.16667 NA intron (NM_001354159, intron 1 of 14) MIRb|SINE|MIR 916 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 202.167-7 chr11 37449320 37449633 + 1.16667 NA Intergenic Intergenic -489125 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 190.334-8 chr4 120938687 120938920 + 1.16667 NA Intergenic L1M4|LINE|L1 -15937 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 311.834-3 chr15 69798796 69799273 + 1.16667 NA Intergenic L1M5|LINE|L1 -36200 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 182.5 chr1 20843631 20843994 + 1.16667 NA intron (NM_003760, intron 24 of 31) L1PA12|LINE|L1 -57124 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 243.334-11 chr5 157792838 157793242 + 1.16667 NA intron (NM_014666, intron 9 of 11) intron (NM_014666, intron 9 of 11) 49328 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 346.834-2 chr8 130460270 130460644 + 1.16667 NA Intergenic L1MB3|LINE|L1 -16783 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 177-13 chr14 49825090 49825329 + 1.16667 NA intron (NM_001301732, intron 16 of 31) HAL1|LINE|L1 27579 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 255-29 chr5 68116022 68116284 + 1.16667 NA Intergenic Intergenic -73723 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 228.334 chr11 97480144 97480643 + 1.16667 NA Intergenic L1MA8|LINE|L1 971968 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 263.167-3 chr10 20810639 20811193 + 1.16667 NA intron (NM_006393, intron 24 of 27) MIR|SINE|MIR 86686 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 228.334-9 chr6 11539190 11539475 + 1.16667 NA intron (NM_001100829, intron 1 of 2) intron (NM_001100829, intron 1 of 2) 1583 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 229.167-5 chr1 195581264 195581727 + 1.16667 NA Intergenic L1MDa|LINE|L1 507220 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 235.5-23 chr9 22395788 22396054 + 1.16667 NA Intergenic Intergenic -50903 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 355.334-2 chr16 89701782 89702170 + 1.16667 NA promoter-TSS (NM_152339) promoter-TSS (NM_152339) -271 NM_152339 124044 Hs.374556 NM_152339 ENSG00000158792 SPATA2L C16orf76|tamo spermatogenesis associated 2 like protein-coding 181.834-7 chr20 48303389 48303770 + 1.16667 NA Intergenic Intergenic -56332 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 230.667-11 chr16 63920946 63921288 + 1.16667 NA Intergenic Intergenic 1200946 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 220.833 chr1 93846371 93846664 + 1.16667 NA promoter-TSS (NR_030621) promoter-TSS (NR_030621) -315 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA 309.667-15 chr3 128426607 128427069 + 1.16667 NA Intergenic Intergenic -36756 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 251.501-2 chr3 124573824 124574039 + 1.16667 NA intron (NM_001024660, intron 34 of 59) intron (NM_001024660, intron 34 of 59) -10727 NM_001322995 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 169.5-43 chr6 162616849 162617229 + 1.16667 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -110093 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 264.5-4 chr11 116312890 116313546 + 1.16667 NA Intergenic Intergenic -326204 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 287.167-16 chr6 165137348 165137867 + 1.16667 NA Intergenic MSTA|LTR|ERVL-MaLR 171998 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 250.167-14 chr5 41050930 41051340 + 1.16667 NA intron (NM_173489, intron 12 of 41) intron (NM_173489, intron 12 of 41) 20207 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 167-45 chr9 83772885 83773144 + 1.16667 NA intron (NM_025211, intron 7 of 12) L1MD3|LINE|L1 44755 NM_025211 80318 Hs.522255 NM_025211 ENSG00000165113 GKAP1 FKSG21|GKAP42 G kinase anchoring protein 1 protein-coding 192-37 chr6 108870018 108870312 + 1.16667 NA intron (NM_001286609, intron 3 of 16) intron (NM_001286609, intron 3 of 16) 21743 NM_032131 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 190.5-2 chr1 87121523 87121779 + 1.16667 NA Intergenic Intergenic -8114 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 240.667-20 chr18 80024767 80025073 + 1.16667 NA intron (NM_001305564, intron 1 of 2) PRIMA4-int|LTR|ERV1 9016 NM_001305564 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 278.167-5 chr10 121250210 121250694 + 1.16667 NA Intergenic Intergenic 280862 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 179.667-21 chr2 86430229 86430411 + 1.16667 NA Intergenic L1M2|LINE|L1 -11051 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 273-21 chr3 158447875 158448155 + 1.16667 NA intron (NM_001271838, intron 6 of 9) intron (NM_001271838, intron 6 of 9) -78693 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 235-10 chr14 37668982 37669561 + 1.16667 NA intron (NM_001310135, intron 3 of 32) intron (NM_001310135, intron 3 of 32) 73642 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 264.834 chr10 7243450 7243708 + 1.16667 NA exon (NM_001018039, exon 9 of 21) exon (NM_001018039, exon 9 of 21) -56795 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 239.667-9 chr10 107653099 107653426 + 1.16667 NA Intergenic Intergenic 416031 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 176.5-18 chr2 174339248 174339586 + 1.16667 NA TTS (NM_001145250) TTS (NM_001145250) 4463 NM_001145250 100131390 NM_001145250 ENSG00000217236 SP9 ZNF990 Sp9 transcription factor protein-coding 287.667-17 chr20 62921550 62922019 + 1.16667 NA intron (NM_022105, intron 1 of 5) AluJb|SINE|Alu 4721 NM_001193370 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 249.5-7 chr2 32627991 32628353 + 1.16667 NA 5' UTR (NM_017735, exon 1 of 20) 5' UTR (NM_017735, exon 1 of 20) 122 NM_001193509 55622 Hs.468125 NM_017735 ENSG00000018699 TTC27 - tetratricopeptide repeat domain 27 protein-coding 292.834-4 chr2 38552774 38553041 + 1.16667 NA Intergenic Intergenic -37167 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 192.167-35 chr8 11377774 11378009 + 1.16667 NA intron (NR_026814, intron 1 of 6) intron (NR_026814, intron 1 of 6) 9489 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 210.834-4 chr12 104289648 104289865 + 1.16667 NA intron (NM_001261446, intron 2 of 13) AluSx1|SINE|Alu 2724 NM_182729 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 175.167-31 chr3 138410713 138410977 + 1.16667 NA Intergenic Intergenic -23728 NR_136409 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 221.667-33 chr4 43494609 43494954 + 1.16667 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -2238 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 191.5-2 chr1 109493610 109493965 + 1.16667 NA promoter-TSS (NM_001134402) promoter-TSS (NM_001134402) -249 NM_001134402 284613 Hs.514682 NM_182580 ENSG00000174151 CYB561D1 - cytochrome b561 family member D1 protein-coding 196.334-7 chr18 55476743 55477017 + 1.16667 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) -2341 NR_039754 100616290 NR_039754 ENSG00000264571 MIR4529 - microRNA 4529 ncRNA 344-8 chr17 1259231 1259741 + 1.16667 NA Intergenic Intergenic -11078 NM_001164405 727857 Hs.723790 NM_001164405 ENSG00000205899 BHLHA9 BHLHF42|CCSPD basic helix-loop-helix family member a9 protein-coding 193-5 chr10 6086543 6086785 + 1.16667 NA Intergenic Intergenic -2370 NM_032905 84991 Hs.498548 NM_032905 ENSG00000134453 RBM17 SPF45 RNA binding motif protein 17 protein-coding 359.334-3 chr18 22929851 22930329 + 1.16667 NA Intergenic Intergenic -3238 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 246.334-6 chr6 138693625 138694092 + 1.16667 NA intron (NR_033896, intron 1 of 3) intron (NR_033896, intron 1 of 3) 2190 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 167-24 chr22 36529147 36529320 + 1.16667 NA promoter-TSS (NM_003753) promoter-TSS (NM_003753) -67 NR_156418 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 336.167-3 chr14 89911982 89912435 + 1.16667 NA intron (NM_001284269, intron 5 of 5) intron (NM_001284269, intron 5 of 5) 42328 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 416.667-9 chr6 24312657 24313149 + 1.16667 NA intron (NM_016356, intron 2 of 9) intron (NM_016356, intron 2 of 9) -44000 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 211.167-15 chr3 122525895 122526186 + 1.16667 NA Intergenic MLT1E2|LTR|ERVL-MaLR -11101 NR_026698 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 180.5-49 chrX 111447448 111447917 + 1.16667 NA Intergenic Intergenic -35490 NM_001369372 1641 Hs.34780 NM_000555 ENSG00000077279 DCX DBCN|DC|LISX|SCLH|XLIS doublecortin protein-coding 328.001-3 chr8 21246996 21247345 + 1.16667 NA Intergenic Intergenic -51069 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 258.167-17 chr7 15192971 15193375 + 1.16667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -218315 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 300.667-11 chr20 22586472 22586889 + 1.16667 NA TTS (NR_109883) TTS (NR_109883) -1190 NM_153675 3170 Hs.155651 NM_021784 ENSG00000125798 FOXA2 HNF3B|TCF3B forkhead box A2 protein-coding 223-6 chr10 113548872 113549120 + 1.16667 NA Intergenic MER58A|DNA|hAT-Charlie -1835 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 240.834-4 chr15 63687672 63687938 + 1.16667 NA intron (NM_003922, intron 33 of 77) L2a|LINE|L2 -86978 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 212.834-11 chr5 151276242 151276515 + 1.16667 NA TTS (NM_001145017) TTS (NM_001145017) 23193 NM_001167607 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 176.834-2 chr16 5857161 5857468 + 1.16667 NA Intergenic Tigger1|DNA|TcMar-Tigger -161710 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 188-18 chr17 60311848 60312098 + 1.16667 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) 80160 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 244.5-3 chr11 124560599 124561104 + 1.16667 NA Intergenic L1ME4a|LINE|L1 -9146 NM_001005194 390275 Hs.632104 NM_001005194 ENSG00000196119 OR8A1 OR11-318|OST025 olfactory receptor family 8 subfamily A member 1 protein-coding 258.833-15 chr6 85127086 85127541 + 1.16667 NA Intergenic Intergenic 262873 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 256.667-20 chr5 8675262 8675692 + 1.16667 NA Intergenic Intergenic -164255 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 344.834-3 chr22 46034315 46034799 + 1.16667 NA Intergenic AluSp|SINE|Alu 10311 NR_027036 100271722 Hs.528519 NR_027036 LINC00899 - long intergenic non-protein coding RNA 899 ncRNA 224-7 chr12 12165164 12165479 + 1.16667 NA intron (NM_002336, intron 7 of 22).2 intron (NM_002336, intron 7 of 22).2 53369 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 480.334 chr3 52536029 52536580 + 1.16667 NA promoter-TSS (NM_001124767) promoter-TSS (NM_001124767) -301 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 285.334-5 chr5 89316360 89316767 + 1.16667 NA intron (NR_136219, intron 7 of 9) L1PA7|LINE|L1 -412458 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 399.334-6 chr7 13388517 13388974 + 1.16667 NA Intergenic L1M4a2|LINE|L1 597769 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 221.334-4 chr14 27688379 27688694 + 1.16667 NA Intergenic Intergenic -15315 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 188.333-18 chr15 84720525 84720705 + 1.16667 NA Intergenic Intergenic -4155 NM_001271921 23478 Hs.9534 NM_014300 ENSG00000140612 SEC11A 1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895 SEC11 homolog A, signal peptidase complex subunit protein-coding 197.5-36 chr9 35182081 35182367 + 1.16667 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 20215 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 227.667-2 chr1 104769696 104770078 + 1.16667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 696864 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 213.667-16 chr17 28891070 28891259 + 1.16667 NA intron (NM_004475, intron 1 of 10) AluJb|SINE|Alu 6569 NM_004475 2319 Hs.514038 NM_004475 ENSG00000132589 FLOT2 ECS-1|ECS1|ESA|ESA1|M17S1 flotillin 2 protein-coding 282.834-4 chr2 47594788 47595201 + 1.16667 NA Intergenic LTR19A|LTR|ERV1 -24663 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 174.333-14 chr17 43880316 43880577 + 1.16667 NA intron (NM_001278371, intron 9 of 11) intron (NM_001278371, intron 9 of 11) 20178 NM_001278376 4355 Hs.514208 NM_005374 ENSG00000108852 MPP2 DLG2 membrane palmitoylated protein 2 protein-coding 337.001-2 chr6 129740945 129741268 + 1.16667 NA Intergenic Intergenic -30929 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 238.501 chr12 107764621 107764835 + 1.16667 NA Intergenic AluJb|SINE|Alu -3591 NM_012406 11108 Hs.506655 NM_012406 ENSG00000110851 PRDM4 PFM1 PR/SET domain 4 protein-coding 210.834-8 chr6 111137953 111138146 + 1.16667 NA intron (NM_018593, intron 1 of 5) LTR17|LTR|ERV1 24215 NR_145796 109623478 NR_145796 SNORD166 - small nucleolar RNA, C/D box 166 snoRNA 175.334-3 chr3 138117887 138118244 + 1.16667 NA Intergenic Intergenic -2457 NM_173543 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2|PKD5 DAZ interacting zinc finger protein 1 like protein-coding 279.834-11 chr8 134252418 134252757 + 1.16667 NA Intergenic Intergenic -345484 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 293-9 chr18 74491328 74491794 + 1.16667 NA Intergenic Intergenic -4802 NM_001370254 55748 Hs.149185 NM_018235 ENSG00000133313 CNDP2 CN2|CPGL|HEL-S-13|HsT2298|PEPA carnosine dipeptidase 2 protein-coding 370.667-9 chr9 31448025 31448591 + 1.16667 NA Intergenic Intergenic -66818 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 263.5-4 chr1 240821963 240822440 + 1.16667 NA intron (NM_001350116, intron 10 of 16) MLT2D|LTR|ERVL -210046 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 163.667-3 chr1 99050349 99050617 + 1.16667 NA intron (NR_033940, intron 1 of 2) L1PA17|LINE|L1 -45622 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 212.167-14 chr7 87564439 87565016 + 1.16667 NA intron (NM_001348944, intron 9 of 29) MIR3|SINE|MIR 36157 NM_001348946 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 165.834-9 chr6 133529808 133530019 + 1.16667 NA 3' UTR (NM_001301012, exon 18 of 18) 3' UTR (NM_001301012, exon 18 of 18) 288414 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 302.834-5 chr2 162361334 162361704 + 1.16667 NA 3' UTR (NM_012198, exon 8 of 8) 3' UTR (NM_012198, exon 8 of 8) 17151 NM_001330271 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 180.334-5 chr6 111883619 111883833 + 1.16667 NA Intergenic Intergenic -10274 NM_002037 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 353.167-7 chr4 89229146 89229584 + 1.16667 NA Intergenic Intergenic 78435 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 253.5-9 chr12 15455585 15455953 + 1.16667 NA intron (NM_030667, intron 1 of 26) L1MB1|LINE|L1 -90842 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 261.501 chr1 238727540 238727827 + 1.16667 NA Intergenic Intergenic -241666 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 367.834-2 chr16 27239521 27240026 + 1.16667 NA intron (NM_145080, intron 2 of 7) intron (NM_145080, intron 2 of 7) -28432 NR_037184 400512 Hs.434412 NR_037184 ENSG00000245888 NSMCE1-DT - NSMCE1 divergent transcript ncRNA 254-21 chr5 62557339 62557896 + 1.16667 NA intron (NM_016338, intron 26 of 29) intron (NM_016338, intron 26 of 29) -21118 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 330.167-3 chr14 60002719 60003176 + 1.16667 NA intron (NR_075071, intron 20 of 32) intron (NR_075071, intron 20 of 32) 83234 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 268.5-15 chr18 66612171 66612505 + 1.16667 NA Intergenic Intergenic -8248 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 205.334-8 chr20 25159381 25159601 + 1.16667 NA Intergenic Intergenic -10701 NR_027091 284798 Hs.334934 NR_027091 ENSG00000230725 LOC284798 - uncharacterized LOC284798 ncRNA 191.334-11 chr9 94944669 94944868 + 1.16667 NA intron (NR_147613, intron 1 of 2) L1MB8|LINE|L1 786 NR_147614 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 321.001-3 chr2 141912299 141912630 + 1.16667 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 219237 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 239.667-31 chr3 153331140 153331357 + 1.16667 NA Intergenic Intergenic -153247 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 297.5-6 chr12 14074107 14074485 + 1.16667 NA Intergenic Intergenic -93940 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 243.667 chr1 201849286 201849744 + 1.16667 NA intron (NM_018085, intron 4 of 23) intron (NM_018085, intron 4 of 23) -13858 NR_106797 102466724 NR_106797 ENSG00000277681 MIR6739 hsa-mir-6739 microRNA 6739 ncRNA 186.834-6 chr3 62832726 62832930 + 1.16667 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 42588 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 239.167-37 chrX 42558534 42558923 + 1.16667 NA Intergenic L1PREC2|LINE|L1 219435 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 181.667-37 chr5 61913374 61913787 + 1.16667 NA Intergenic MER61-int|LTR|ERV1 -177882 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 201.667-39 chr3 74532403 74532715 + 1.16667 NA Intergenic MER44B|DNA|TcMar-Tigger -11419 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 171.5-15 chr13 87916370 87916562 + 1.16667 NA Intergenic Intergenic -105946 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 197.167-23 chr2 100194257 100194655 + 1.16667 NA Intergenic Intergenic -13798 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 230-34 chr5 172306086 172306636 + 1.16667 NA Intergenic AluSq2|SINE|Alu 20764 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 205.334-14 chr8 100527116 100527533 + 1.16667 NA intron (NM_001270377, intron 4 of 4) intron (NM_001270377, intron 4 of 4) 32435 NM_001270377 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 223.333-13 chr12 131148332 131148639 + 1.16667 NA Intergenic L1PA15|LINE|L1 -16526 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 180.333-49 chr7 24161800 24162170 + 1.16667 NA Intergenic Intergenic -122205 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 199-3 chr1 180824784 180825158 + 1.16667 NA intron (NR_137330, intron 8 of 12) intron (NR_137330, intron 8 of 12) -87926 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 204.5-32 chr6 136788770 136789223 + 1.16667 NA intron (NM_005923, intron 1 of 29) L1PA16|LINE|L1 3481 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 189.334 chr1 107430643 107430855 + 1.16667 NA intron (NM_001113228, intron 6 of 6) intron (NM_001113228, intron 6 of 6) 257750 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 212.667-6 chr12 45675430 45675769 + 1.16667 NA Intergenic AluJb|SINE|Alu 52322 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 206.667-2 chr1 52540810 52541097 + 1.16667 NA intron (NM_001009881, intron 1 of 29) AluSz6|SINE|Alu 12137 NM_015269 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 550.5-3 chr14 74302747 74303384 + 1.16667 NA promoter-TSS (NM_020325) promoter-TSS (NM_020325) -131 NR_003256 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 186.334-8 chr5 56843070 56843283 + 1.16667 NA intron (NM_005921, intron 1 of 19) LTR88b|LTR|Gypsy? 27627 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 337.501-2 chr3 197284281 197284598 + 1.16667 NA intron (NM_001366216, intron 3 of 23) intron (NM_001366216, intron 3 of 23) 9509 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 279.833-2 chr11 41494085 41494674 + 1.16667 NA Intergenic Intergenic -34727 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 242.667-7 chr12 44232672 44233102 + 1.16667 NA intron (NM_001286213, intron 4 of 6) L1ME3B|LINE|L1 396806 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 237.833-10 chr2 9386493 9386870 + 1.16667 NA intron (NM_003887, intron 21 of 27) intron (NM_003887, intron 21 of 27) 35910 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 292-17 chr3 192773086 192773560 + 1.16667 NA Intergenic Intergenic -45782 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 323.167-3 chr3 76107767 76108130 + 1.16667 NA Intergenic Intergenic -322399 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 294.333-14 chr6 41786327 41786890 + 1.16667 NA promoter-TSS (NM_001134493) promoter-TSS (NM_001134493) -835 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 173.333-2 chr1 45881808 45882009 + 1.16667 NA intron (NM_001324321, intron 1 of 28) AluY|SINE|Alu 17560 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 264.333-18 chr20 4108542 4109002 + 1.16667 NA Intergenic Intergenic -40007 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 294.333-8 chr2 58740978 58741500 + 1.16667 NA intron (NR_033873, intron 2 of 13) L2c|LINE|L2 220486 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 279.834-5 chr15 69305568 69305875 + 1.16667 NA intron (NM_017705, intron 1 of 8) intron (NM_017705, intron 1 of 8) 6809 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 300.834-11 chr4 26702550 26702933 + 1.16667 NA intron (NM_001292054, intron 10 of 17) L1MB1|LINE|L1 118657 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 261.5-38 chrX 49079301 49079753 + 1.16667 NA intron (NM_007075, intron 2 of 11) intron (NM_007075, intron 2 of 11) 360 NM_001029896 11152 Hs.632807 NM_007075 ENSG00000196998 WDR45 JM5|NBIA4|NBIA5|WDRX1|WIPI-4|WIPI4 WD repeat domain 45 protein-coding 200.667-20 chr17 32908121 32908417 + 1.16667 NA Intergenic FLAM_A|SINE|Alu -19641 NM_001301746 26022 Hs.3447 NM_015544 ENSG00000006042 TMEM98 TADA1 transmembrane protein 98 protein-coding 225.5-20 chr5 100601531 100601826 + 1.16667 NA Intergenic Intergenic 66304 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 303 chr10 29033789 29034075 + 1.16667 NA Intergenic AluJo|SINE|Alu 187524 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 211.333-48 chr8 72633739 72634035 + 1.16667 NA intron (NM_004770, intron 2 of 2) MER91B|DNA|hAT-Tip100 96662 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 232.834-9 chr4 129556985 129557344 + 1.16667 NA Intergenic Intergenic 214314 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 196.334-4 chr13 91347633 91347883 + 1.16667 NA promoter-TSS (NR_027349) promoter-TSS (NR_027349) -62 NR_027349 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 183.167-10 chr13 52699647 52699872 + 1.16667 NA 3' UTR (NM_006704, exon 13 of 13) 3' UTR (NM_006704, exon 13 of 13) 40061 NM_007015 11061 Hs.421391 NM_007015 ENSG00000136110 CNMD BRICD3|CHM-I|CHM1|LECT1|MYETS1 chondromodulin protein-coding 249.167-8 chr16 23600279 23600591 + 1.16667 NA Intergenic LTR5_Hs|LTR|ERVK -4119 NM_005003 4706 Hs.189716 NM_005003 ENSG00000004779 NDUFAB1 ACP|ACP1|FASN2A|SDAP NADH:ubiquinone oxidoreductase subunit AB1 protein-coding 184.501 chr12 26026745 26027035 + 1.16667 NA intron (NM_001164747, intron 2 of 5) L1MB8|LINE|L1 -25674 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 293.5-20 chr5 156010080 156010486 + 1.16667 NA Intergenic Intergenic -316474 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 205.667-17 chr2 47783096 47783411 + 1.16667 NA promoter-TSS (NM_001281494) promoter-TSS (NM_001281494) 171 NM_000179 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 215.667-17 chr13 60027819 60028190 + 1.16667 NA intron (NR_109838, intron 3 of 4) intron (NR_109838, intron 3 of 4) 14701 NR_051993 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 174.167-11 chr16 47366829 47367074 + 1.16667 NA intron (NM_030790, intron 7 of 17) MER21B|LTR|ERVL 94112 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 308.001-5 chrX 140576644 140576967 + 1.16667 NA Intergenic L1MC5a|LINE|L1 -71745 NM_005634 6658 Hs.157429 NM_005634 ENSG00000134595 SOX3 GHDX|MRGH|PHP|PHPX|SOXB SRY-box transcription factor 3 protein-coding 437.167-6 chr4 46577826 46578363 + 1.16667 NA Intergenic Intergenic -187966 NM_000807 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 196.167-38 chr8 132627746 132628112 + 1.16667 NA intron (NR_135913, intron 4 of 10) LTR78B|LTR|ERV1 47616 NM_001321965 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 177.5-45 chr6 121547988 121548317 + 1.16667 NA Intergenic Intergenic 112506 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 330.834-3 chr20 142932 143368 + 1.16667 NA intron (NM_030931, intron 1 of 1) intron (NM_030931, intron 1 of 1) 560 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 180.334-3 chr2 160677814 160678316 + 1.16667 NA Intergenic Intergenic -184258 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 213.334-6 chr16 89216723 89216916 + 1.16667 NA promoter-TSS (NM_001201407) promoter-TSS (NM_001201407) -884 NM_001201407 197320 Hs.647385 NM_182531 ENSG00000170100 ZNF778 - zinc finger protein 778 protein-coding 234.834-6 chr3 99216397 99216708 + 1.16667 NA Intergenic Intergenic -314857 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 216-15 chr15 48144723 48145093 + 1.16667 NA intron (NM_016132, intron 16 of 16) intron (NM_016132, intron 16 of 16) 23918 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 234.5-28 chr3 102089727 102089980 + 1.16667 NA Intergenic Intergenic -73852 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 261.667-17 chr2 128165874 128166204 + 1.16667 NA intron (NR_027671, intron 26 of 40) intron (NR_027671, intron 26 of 40) 74839 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 175.167-24 chr2 102487208 102487831 + 1.16667 NA intron (NM_001011552, intron 2 of 11) intron (NM_001011552, intron 2 of 11) 14293 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 262 chr1 20976688 20977067 + 1.16667 NA intron (NM_003760, intron 5 of 31) AluSx|SINE|Alu 11555 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 223.5-29 chr8 120940844 120941273 + 1.16667 NA Intergenic MamRep1527|LTR|LTR -129012 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 209.5-33 chr7 12002156 12002491 + 1.16667 NA Intergenic Intergenic -170125 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 258.834-4 chr14 62419682 62419937 + 1.16667 NA Intergenic MLT1N2|LTR|ERVL-MaLR -279836 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 242.5-17 chr16 10708808 10709118 + 1.16667 NA Intergenic SATR1|Satellite|Satellite -14033 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 316.334-5 chr2 44182036 44182434 + 1.16667 NA intron (NM_177969, intron 1 of 4) intron (NM_177969, intron 1 of 4) 13360 NM_177968 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 233.167-20 chr6 149408397 149408694 + 1.16667 NA intron (NM_001292034, intron 6 of 6) intron (NM_001292034, intron 6 of 6) 8283 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 253.334-11 chr4 45875977 45876341 + 1.16667 NA Intergenic Intergenic 247895 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 295.5-13 chr3 196196772 196197166 + 1.16667 NA TTS (NR_135617) TTS (NR_135617) 14431 NR_135617 131540 Hs.111591 NM_001039617 ENSG00000163958 ZDHHC19 DHHC19 zinc finger DHHC-type containing 19 protein-coding 367-11 chr19 51712357 51713085 + 1.16667 NA TTS (NM_001523) TTS (NM_001523) 11270 NM_001297436 3036 Hs.57697 NM_001523 ENSG00000105509 HAS1 HAS hyaluronan synthase 1 protein-coding 186.833-24 chr8 85572005 85572396 + 1.16667 NA Intergenic Intergenic 83476 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 272.667-22 chr5 112415955 112416332 + 1.16667 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 3134 NM_001347887 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 418.501 chr15 55290288 55290804 + 1.16667 NA promoter-TSS (NM_183235) promoter-TSS (NM_183235) -733 NM_183235 5873 Hs.654978 NM_004580 ENSG00000069974 RAB27A GS2|HsT18676|RAB27|RAM RAB27A, member RAS oncogene family protein-coding 240.334-6 chr4 61897941 61898320 + 1.16667 NA intron (NM_001371343, intron 11 of 23) LTR33A_|LTR|ERVL 263635 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 263.167-16 chr7 51634443 51634835 + 1.16667 NA Intergenic Intergenic -241383 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 306-6 chr18 1746317 1746717 + 1.16667 NA Intergenic Intergenic -386888 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 253.334-6 chr14 54448545 54448776 + 1.16667 NA Intergenic L1ME2|LINE|L1 -7286 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 211.167-30 chr9 30978057 30978451 + 1.16667 NA Intergenic THE1B-int|LTR|ERVL-MaLR 403236 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 185.5-25 chr20 49528641 49528894 + 1.16667 NA intron (NM_000961, intron 5 of 9) L1ME4b|LINE|L1 39370 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 228.834-2 chr10 124357012 124357375 + 1.16667 NA Intergenic Intergenic 61730 NM_001322971 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 214.167-20 chr3 165219067 165219559 + 1.16667 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 12353 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 193.667-25 chr17 64010890 64011085 + 1.16667 NA intron (NM_001099788, intron 1 of 5) L1MA8|LINE|L1 -4064 NM_000873 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 298.667-15 chr21 30721987 30722684 + 1.16667 NA Intergenic Intergenic -3558 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 173.667-24 chr17 72485855 72486104 + 1.16667 NA intron (NR_036488, intron 1 of 3) Charlie1a|DNA|hAT-Charlie 106825 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 185.333-55 chr8 118340690 118340939 + 1.16667 NA TTS (NM_001363274) TTS (NM_001363274) -228995 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 201.5-39 chr8 136097091 136097381 + 1.16667 NA Intergenic L1MC|LINE|L1 -433562 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 227.167-3 chr11 113304613 113304831 + 1.16667 NA Intergenic MIRb|SINE|MIR -9861 NR_147891 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 226.667-43 chrX 153667726 153668011 + 1.16667 NA Intergenic Intergenic 5420 NM_001135740 139728 Hs.436667 NM_198452 ENSG00000130822 PNCK BSTK3|CaMK1b pregnancy up-regulated nonubiquitous CaM kinase protein-coding 204.667-32 chr4 107795574 107795927 + 1.16667 NA Intergenic Intergenic -28815 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 181.834-10 chr3 195222451 195222832 + 1.16667 NA intron (NM_152531, intron 2 of 3) L1ME4c|LINE|L1 25279 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 240.501-3 chr21 26307673 26307961 + 1.16667 NA Intergenic L1PB1|LINE|L1 -85818 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 243.834-6 chr4 66732512 66732757 + 1.16667 NA Intergenic LTR62|LTR|ERVL 455810 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 296.834-8 chr5 77239310 77239605 + 1.16667 NA intron (NM_001029853, intron 1 of 20) L1MEf|LINE|L1 28777 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 227.667-33 chr4 52836047 52836599 + 1.16667 NA Intergenic MLT1F|LTR|ERVL-MaLR -25994 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 267.334-4 chr4 83846063 83846467 + 1.16667 NA Intergenic Intergenic 310157 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 245-7 chr12 19492451 19492825 + 1.16667 NA intron (NM_001114176, intron 3 of 8) intron (NM_001114176, intron 3 of 8) 52039 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 228.667-13 chr15 88331428 88331870 + 1.16667 NA Intergenic Intergenic -74910 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 202.5 chr1 48206545 48206872 + 1.16667 NA Intergenic Intergenic -16008 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 281.334-10 chr5 57809760 57810185 + 1.16667 NA Intergenic Intergenic 89190 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 193.5-34 chr3 172658937 172659379 + 1.16667 NA intron (NM_001146276, intron 1 of 4) LTR22C0|LTR|ERVK 51909 NM_001146277 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 343.167-5 chr7 78592573 78592961 + 1.16667 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 245525 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 206.834-13 chr8 4389505 4389947 + 1.16667 NA intron (NM_033225, intron 3 of 69) L1ME3D|LINE|L1 605188 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 176.334 chr1 47905788 47906161 + 1.16667 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 91411 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 168.667-31 chr3 181572777 181573011 + 1.16667 NA intron (NR_075091, intron 4 of 7) Charlie1a|DNA|hAT-Charlie -37440 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 206.334-5 chr7 136086220 136086568 + 1.16667 NA Intergenic L1M6|LINE|L1 -109035 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 183.5-44 chr8 115225422 115225666 + 1.16667 NA Intergenic Intergenic 442469 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 246-2 chr10 60932552 60932876 + 1.16667 NA intron (NM_001350908, intron 2 of 11) intron (NM_001350908, intron 2 of 11) 11471 NM_001350910 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 289.001-2 chr13 51815030 51815344 + 1.16667 NA 3' UTR (NM_001351005, exon 4 of 4) 3' UTR (NM_001351005, exon 4 of 4) -11024 NM_001031719 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 230.334-6 chr22 29635981 29636265 + 1.16667 NA intron (NR_156186, intron 2 of 16) intron (NR_156186, intron 2 of 16) 32490 NM_181825 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 190-17 chr12 59389084 59389309 + 1.16667 NA Intergenic Intergenic -206833 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 306.667-18 chr4 54228700 54229156 + 1.16667 NA promoter-TSS (NM_001347828) promoter-TSS (NM_001347828) -365 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 231.834-4 chr11 114825557 114825904 + 1.16667 NA Intergenic Intergenic 147203 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 181.667-30 chr20 14741755 14741944 + 1.16667 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 187465 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 251.167 chr1 117314591 117314945 + 1.16667 NA intron (NR_126408, intron 2 of 2) MIRb|SINE|MIR 19302 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 177.5-25 chr17 63311243 63311547 + 1.16667 NA intron (NM_025185, intron 8 of 25) L1ME4a|LINE|L1 128872 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 274.334-5 chr22 26886208 26886542 + 1.16667 NA Intergenic AluJr|SINE|Alu -16917 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 347.167-9 chr20 57697544 57698062 + 1.16667 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -7117 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 231.834-7 chr2 127006779 127007006 + 1.16667 NA Intergenic L1MC|LINE|L1 75173 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 225.667-27 chr22 39943205 39943616 + 1.16667 NA intron (NM_001291828, intron 1 of 4) intron (NM_001291828, intron 1 of 4) -3407 NM_001291825 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 205.334-7 chr18 12846266 12846901 + 1.16667 NA intron (NM_080423, intron 2 of 8) L1MC4|LINE|L1 -5621 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 174.333-11 chr15 38368573 38368770 + 1 NA Intergenic L1M5|LINE|L1 -85456 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 205.833-13 chr17 21214227 21214657 + 1 NA non-coding (NR_024547, exon 1 of 3) non-coding (NR_024547, exon 1 of 3) 153 NR_024547 8834 Hs.592945 NM_003876 ENSG00000178307 TMEM11 C17orf35|PM1|PMI transmembrane protein 11 protein-coding 180.333-19 chr15 86160412 86160835 + 1 NA intron (NM_152336, intron 5 of 24) intron (NM_152336, intron 5 of 24) -43906 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 219.333-39 chr6 119786040 119786459 + 1 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) -228930 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 168.5-3 chr1 115165961 115166178 + 1 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -76566 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 192.5-47 chr7 36302446 36302817 + 1 NA Intergenic Intergenic 64609 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 309.167-9 chr18 13045893 13046342 + 1 NA intron (NM_032142, intron 15 of 44) MSTA|LTR|ERVL-MaLR 54755 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 221.833-20 chr7 64624919 64625327 + 1 NA Intergenic Intergenic -40960 NM_001282360 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 190.333-2 chr1 152054014 152054366 + 1 NA Intergenic L1M5|LINE|L1 -17186 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 184.5-15 chr12 6153870 6154189 + 1 NA Intergenic L1M5|LINE|L1 -29354 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 176.5-38 chr7 41692498 41692724 + 1 NA intron (NM_002192, intron 2 of 2) intron (NM_002192, intron 2 of 2) -1308 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 171.167-20 chr2 80724564 80724886 + 1 NA Intergenic Intergenic 411346 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 221.667-10 chr12 16642293 16642691 + 1 NA Intergenic AluSx|SINE|Alu -34278 NM_001243609 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 245.667-7 chr13 104129266 104129708 + 1 NA Intergenic Intergenic 704287 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 244.667-16 chr2 151011886 151012286 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X 249777 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 217.667-21 chr17 29943376 29943593 + 1 NA intron (NR_026738, intron 2 of 15) intron (NR_026738, intron 2 of 15) 1850 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 298.333-4 chr11 66956802 66957282 + 1 NA intron (NM_001040716, intron 1 of 22) intron (NM_001040716, intron 1 of 22) 1341 NM_001040716 5091 Hs.89890 NM_000920 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 212.5-31 chr6 55659460 55659813 + 1 NA Intergenic Intergenic -80422 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 173.833-34 chr8 18500814 18501219 + 1 NA Intergenic Intergenic 109734 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 199.333-8 chr10 71812172 71812378 + 1 NA 5' UTR (NM_001171936, exon 1 of 4) 5' UTR (NM_001171936, exon 1 of 4) 392 NM_001171935 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 343.333-6 chr16 89263704 89264135 + 1 NA Intergenic AluSg|SINE|Alu -32209 NR_136339 105371414 Hs.657381 NR_136339 ENSG00000260279 LOC105371414 - uncharacterized LOC105371414 ncRNA 317.833-11 chr5 8534944 8535310 + 1 NA Intergenic Intergenic 74202 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 211.667-4 chr1 240455017 240455396 + 1 NA intron (NM_020066, intron 16 of 17) intron (NM_020066, intron 16 of 17) 156949 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 263.5-26 chr6 36188926 36189211 + 1 NA Intergenic HAL1|LINE|L1 -7676 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 330.5-13 chr6 55870232 55870612 + 1 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 5168 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 164.5-37 chr3 87991407 87991706 + 1 NA exon (NM_001322208, exon 3 of 3) exon (NM_001322208, exon 3 of 3) 8980 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 540.667-4 chr14 83159615 83160211 + 1 NA Intergenic Intergenic 517281 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 278.167-27 chr7 101173681 101174098 + 1 NA intron (NM_001369694, intron 3 of 4) AluJr|SINE|Alu 5347 NM_001369695 375607 Hs.213044 NM_198571 ENSG00000167011 NAT16 C7orf52 N-acetyltransferase 16 (putative) protein-coding 215.667-28 chr3 14917894 14918371 + 1 NA intron (NM_152536, intron 12 of 19) intron (NM_152536, intron 12 of 19) 29373 NR_046254 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 272.333-19 chrX 99138614 99138954 + 1 NA Intergenic MIRb|SINE|MIR 1271489 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 266.5-10 chr14 46772596 46773013 + 1 NA Intergenic HAL1|LINE|L1 -121023 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 219.333-6 chr10 31084797 31085096 + 1 NA Intergenic L3|LINE|CR1 -53009 NM_001143771 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 291.167-3 chr1 244970327 244970703 + 1 NA intron (NR_026587, intron 1 of 5) CpG 186 NM_001143943 84288 Hs.134857 NM_032328 ENSG00000203666 EFCAB2 CFAP200|DRC8 EF-hand calcium binding domain 2 protein-coding 274.833-15 chr9 74637363 74637875 + 1 NA intron (NM_006914, intron 3 of 9) intron (NM_006914, intron 3 of 9) 22085 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 170.333-24 chr16 53123537 53123857 + 1 NA intron (NM_025134, intron 1 of 38) AluSq2|SINE|Alu -7315 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 213.833-2 chr1 113418892 113419180 + 1 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 28521 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 246.333-29 chr5 1696368 1696819 + 1 NA Intergenic AluJb|SINE|Alu 12275 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 218.833-24 chr7 38167279 38167733 + 1 NA Intergenic L1MB2|LINE|L1 -10739 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 177.667-6 chr12 14472940 14473169 + 1 NA intron (NM_181352, intron 10 of 14) L1M4a1|LINE|L1 87773 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 173.167-14 chr16 51939391 51939711 + 1 NA Intergenic Intergenic 134384 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 423.667-5 chr2 88831565 88832415 + 1 NA Intergenic Intergenic 19620 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 547.667-4 chr9 132354594 132355294 + 1 NA promoter-TSS (NM_001351528) promoter-TSS (NM_001351528) 42 NM_015046 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 217.5-21 chr5 120900095 120900483 + 1 NA Intergenic Tigger18a|DNA|TcMar-Tigger 368825 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 370.667-3 chr2 189341704 189342296 + 1 NA Intergenic LOR1-int|LTR|ERV1 -99433 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 314.167-13 chr8 124474143 124474518 + 1 NA promoter-TSS (NM_007218) promoter-TSS (NM_007218) 24 NR_108048 101927612 Hs.633137 NR_108047 ENSG00000245149 RNF139-AS1 - RNF139 antisense RNA 1 (head to head) ncRNA 172.667-39 chr3 141460279 141460514 + 1 NA Intergenic Intergenic -26631 NM_001303245 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 203.333-56 chr7 80353256 80353585 + 1 NA Intergenic Intergenic 21019 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 236.667-8 chr14 29866708 29867082 + 1 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 60201 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 192.167-26 chr3 179446466 179446718 + 1 NA intron (NM_021629, intron 1 of 9) intron (NM_021629, intron 1 of 9) 4878 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 255.333-12 chr2 28453061 28453548 + 1 NA Intergenic Intergenic -42756 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 211.667-14 chr2 10441985 10442433 + 1 NA intron (NM_001287189, intron 8 of 11) intron (NM_001287189, intron 8 of 11) 4640 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 278.333-7 chr12 27314629 27315043 + 1 NA intron (NM_015000, intron 7 of 13) intron (NM_015000, intron 7 of 13) -18000 NM_020183 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 234.667-7 chr12 54993603 54994019 + 1 NA Intergenic AluJo|SINE|Alu -9049 NM_001351149 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 166.5-23 chr2 147832582 147832902 + 1 NA Intergenic L1ME3|LINE|L1 -11775 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 237.667-28 chr4 4576614 4577069 + 1 NA intron (NR_037888, intron 2 of 5) ORSL-2b|DNA|hAT-Tip100 -34498 NM_001346282 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 258.5-16 chr18 10369839 10370104 + 1 NA Intergenic Intergenic 44399 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 243.667-4 chr10 63370184 63370696 + 1 NA intron (NM_001322258, intron 2 of 24) MIR|SINE|MIR 2608 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 409.334-4 chr17 3723229 3723920 + 1 NA promoter-TSS (NM_031965) promoter-TSS (NM_031965) -329 NM_031965 83903 Hs.534059 NM_031965 ENSG00000177602 HASPIN GSG2 histone H3 associated protein kinase protein-coding 180.333-2 chr1 46768317 46768655 + 1 NA Intergenic Intergenic -30560 NM_001099772 1580 Hs.436317 NM_000779 ENSG00000142973 CYP4B1 CYPIVB1|P-450HP cytochrome P450 family 4 subfamily B member 1 protein-coding 182.5-17 chr16 10716419 10716758 + 1 NA Intergenic SATR1|Satellite|Satellite -21658 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 209.333-3 chr1 50628821 50629066 + 1 NA intron (NM_007051, intron 8 of 18) MIR|SINE|MIR -205500 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 184.333-28 chr4 120565021 120565235 + 1 NA Intergenic Intergenic 357738 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 228.333-12 chr13 112736443 112736906 + 1 NA intron (NM_032189, intron 1 of 28) intron (NM_032189, intron 1 of 28) 18057 NR_109811 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 308.5-2 chr1 221410789 221411402 + 1 NA Intergenic Intergenic -74799 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 181.833-6 chr15 58169158 58169582 + 1 NA intron (NM_020980, intron 2 of 5) intron (NM_020980, intron 2 of 5) 30989 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 191.333-6 chr11 30755799 30756131 + 1 NA Intergenic Intergenic -169612 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 192.5-15 chr18 55826927 55827200 + 1 NA Intergenic L1MB3|LINE|L1 -45338 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 234.667-25 chr4 91306952 91307315 + 1 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 970169 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 287.167-12 chr5 79928712 79929084 + 1 NA Intergenic MIRc|SINE|MIR -7681 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 170.167-29 chr3 105025311 105025706 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -341205 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 209.667 chr1 22750612 22750902 + 1 NA intron (NM_004442, intron 1 of 15) MIR|SINE|MIR 31240 NR_039832 100616391 NR_039832 ENSG00000265422 MIR4684 - microRNA 4684 ncRNA 362.167-5 chr11 65201694 65202390 + 1 NA intron (NR_040008, intron 9 of 20) AluSx1|SINE|Alu -11798 NR_033396 440044 Hs.532372 NM_001004326 ENSG00000197847 SLC22A20P Oat6|SLC22A20 solute carrier family 22 member 20, pseudogene pseudo 237.5-34 chr6 47289810 47290230 + 1 NA intron (NM_014452, intron 1 of 5) intron (NM_014452, intron 1 of 5) 19885 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 176.667-55 chr7 112449679 112449957 + 1 NA promoter-TSS (NR_120333) promoter-TSS (NR_120333) -610 NM_001550 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 175.833-7 chr10 22928498 22928943 + 1 NA intron (NM_001282745, intron 1 of 18) L1ME4a|LINE|L1 667 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 211.667-26 chr3 17622685 17623150 + 1 NA intron (NM_001349084, intron 2 of 22) intron (NM_001349084, intron 2 of 22) 77103 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 327.5-11 chr17 63595201 63595777 + 1 NA Intergenic L2c|LINE|L2 -5406 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 171.667-27 chr2 99470813 99471000 + 1 NA intron (NR_135652, intron 1 of 21) LTR10C|LTR|ERV1 19111 NM_001037872 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 239.5-18 chr19 35628157 35628472 + 1 NA promoter-TSS (NM_024321) promoter-TSS (NM_024321) -702 NM_001319113 79171 Hs.5086 NM_024321 ENSG00000126254 RBM42 - RNA binding motif protein 42 protein-coding 235.667-15 chr17 58491558 58491979 + 1 NA exon (NM_004687, exon 19 of 19) exon (NM_004687, exon 19 of 19) -3360 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 203.833-5 chr11 76799433 76799803 + 1 NA Intergenic Intergenic 7866 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 164.333-20 chr14 96286028 96286283 + 1 NA intron (NM_018036, intron 41 of 41) intron (NM_018036, intron 41 of 41) 29945 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 200.667-43 chr5 123035567 123035866 + 1 NA intron (NM_000943, intron 1 of 4) intron (NM_000943, intron 1 of 4) 1009 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 201.667-35 chr3 46344855 46345347 + 1 NA Intergenic L1ME4a|LINE|L1 -8643 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 216.167-8 chr10 95728883 95729219 + 1 NA intron (NM_001098175, intron 1 of 9) Tigger2b_Pri|DNA|TcMar-Tigger 17287 NM_001098175 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 208.5-41 chr7 26762086 26762402 + 1 NA intron (NM_003930, intron 4 of 12) AluJb|SINE|Alu 95479 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 370.333-6 chr2 80343768 80344195 + 1 NA intron (NM_001282599, intron 1 of 11) L2a|LINE|L2 30602 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 170.333-33 chr20 41897254 41897435 + 1 NA Intergenic Intergenic -278967 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 280.833-4 chr14 25401304 25401876 + 1 NA Intergenic Intergenic -351293 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 184.333-32 chr5 141625266 141625533 + 1 NA intron (NR_149169, intron 12 of 13) intron (NR_149169, intron 12 of 13) -6399 NM_005219 1729 Hs.529451 NM_005219 ENSG00000131504 DIAPH1 DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1 diaphanous related formin 1 protein-coding 394.5-9 chr5 38831508 38832037 + 1 NA intron (NR_109951, intron 1 of 3) MER31A|LTR|ERV1 14057 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 478.667-2 chr20 7113619 7114475 + 1 NA Intergenic MER20|DNA|hAT-Charlie 140155 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 196.5-38 chr7 24394849 24395332 + 1 NA Intergenic MLT1F1|LTR|ERVL-MaLR 110900 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 189.5 chr1 93799583 93800104 + 1 NA intron (NM_001261408, intron 2 of 13) ERV24B_Prim-int|LTR|ERV1 -24460 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 458.666-3 chr5 75236170 75237187 + 1 NA exon (NM_001164443, exon 1 of 25) exon (NM_001164443, exon 1 of 25) 200 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 208.5-20 chr2 58939640 58940021 + 1 NA intron (NR_033873, intron 6 of 13) MIR|SINE|MIR -277878 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 267.5-32 chr4 83253006 83253340 + 1 NA Intergenic Intergenic 31622 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 231.333-32 chr6 123484320 123484598 + 1 NA intron (NM_001256020, intron 8 of 8) intron (NM_001256020, intron 8 of 8) 44855 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 177.5-18 chr13 99513677 99514180 + 1 NA intron (NM_004800, intron 1 of 16) MER58B|DNA|hAT-Charlie 12456 NM_004800 9375 Hs.607896 NM_004800 ENSG00000125304 TM9SF2 P76 transmembrane 9 superfamily member 2 protein-coding 212.667-14 chr16 8926637 8926994 + 1 NA intron (NM_003470, intron 2 of 30) intron (NM_003470, intron 2 of 30) 9824 NM_001286458 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 243.333-13 chr12 5005082 5005461 + 1 NA Intergenic L1MA9|LINE|L1 -38608 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 204.5-3 chr1 222255274 222255758 + 1 NA Intergenic L1MC3|LINE|L1 -276996 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 249.667-6 chr11 58622812 58623302 + 1 NA intron (NM_000614, intron 1 of 1) intron (NM_000614, intron 1 of 1) 392 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 200.333-41 chr7 88771438 88771737 + 1 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) 11887 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 177.5-32 chr20 41215963 41216285 + 1 NA intron (NM_015035, intron 2 of 3) intron (NM_015035, intron 2 of 3) 47101 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 206.667-33 chr22 45723504 45723832 + 1 NA intron (NM_013236, intron 6 of 11) L1PB3|LINE|L1 -36856 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 328.167-5 chr5 105398237 105398689 + 1 NA Intergenic Intergenic 298989 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 300.5-28 chr9 76896864 76897378 + 1 NA intron (NM_001308048, intron 1 of 17) intron (NM_001308048, intron 1 of 17) 8966 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 334.667-10 chr2 176285681 176286214 + 1 NA intron (NM_001006635, intron 2 of 10) L1MB7|LINE|L1 16505 NM_001006635 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 220.333-32 chr9 97926409 97926975 + 1 NA TTS (NM_197978) TTS (NM_197978) -4122 NM_001330725 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 189.667-5 chr10 22384597 22384816 + 1 NA intron (NM_172242, intron 4 of 9) intron (NM_172242, intron 4 of 9) 39210 NM_001253854 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 251.833-8 chr2 104936049 104936470 + 1 NA TTS (NR_110603) TTS (NR_110603) -63664 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 248.333-31 chr7 82344191 82344711 + 1 NA intron (NM_000722, intron 2 of 38) intron (NM_000722, intron 2 of 38) 99326 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 329.833-3 chr18 9114508 9114888 + 1 NA intron (NM_021074, intron 1 of 7) intron (NM_021074, intron 1 of 7) 11999 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 231.333-8 chr1 231601268 231601653 + 1 NA intron (NR_034037, intron 1 of 1) intron (NR_034037, intron 1 of 1) 10630 NR_034037 100287814 Hs.25555 NR_034037 ENSG00000229228 LINC00582 - long intergenic non-protein coding RNA 582 ncRNA 176.5-3 chr10 112102229 112102442 + 1 NA Intergenic Intergenic 81430 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 219.5-16 chr2 74619386 74619700 + 1 NA intron (NM_001321739, intron 2 of 10) intron (NM_001321739, intron 2 of 10) 28494 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 204.333-2 chr1 109974668 109974926 + 1 NA Intergenic Intergenic -9968 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 215.833-9 chr15 70496069 70496315 + 1 NA Intergenic Intergenic 9736 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 271.333-18 chr3 16265999 16266302 + 1 NA intron (NM_001330670, intron 1 of 8) MIR3|SINE|MIR 938 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 254.833-5 chr13 50072856 50073281 + 1 NA intron (NR_152566, intron 2 of 13) intron (NR_152566, intron 2 of 13) 8973 NR_152568 8847 Hs.547964 NR_002612 ENSG00000231607 DLEU2 ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 ncRNA 224.5-32 chr4 94932707 94932985 + 1 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -63386 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 232.667 chr1 13531098 13531494 + 1 NA Intergenic MIRc|SINE|MIR -17293 NM_001010847 126755 Hs.657356 NM_001010847 ENSG00000162494 LRRC38 - leucine rich repeat containing 38 protein-coding 166.333-44 chr5 44483294 44483465 + 1 NA Intergenic LTR17|LTR|ERV1 26903 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 239.5-41 chr8 105225044 105225398 + 1 NA Intergenic Intergenic -93217 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 173.667-8 chr10 100522571 100522780 + 1 NA Intergenic Intergenic -2814 NM_015490 25956 Hs.18889 NM_015490 ENSG00000075826 SEC31B SEC31B-1|SEC31L2 SEC31 homolog B, COPII coat complex component protein-coding 262.667-8 chr10 62276427 62276802 + 1 NA Intergenic Intergenic -7770 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 196.667-45 chr8 88748277 88748655 + 1 NA Intergenic Intergenic -420983 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 189.667-24 chr18 60695479 60695742 + 1 NA Intergenic Intergenic -322835 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 370.333-2 chr12 14256281 14257302 + 1 NA Intergenic Intergenic -108841 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 219.333-29 chr4 56266863 56267249 + 1 NA intron (NM_020722, intron 2 of 10) intron (NM_020722, intron 2 of 10) 96861 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 163.667-54 chr7 81956795 81956963 + 1 NA intron (NM_000722, intron 38 of 38) intron (NM_000722, intron 38 of 38) -52298 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 259.333-19 chr19 3989970 3990295 + 1 NA Intergenic AluSx3|SINE|Alu -4669 NM_001961 1938 Hs.515070 NM_001961 ENSG00000167658 EEF2 EEF-2|EF-2|EF2|SCA26 eukaryotic translation elongation factor 2 protein-coding 205.5-31 chr6 3915204 3915459 + 1 NA Intergenic MER54A|LTR|ERVL 65958 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 197.5-18 chr2 141641864 141642332 + 1 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 489603 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 310.333-6 chr19 51440952 51441507 + 1 NA Intergenic L1PBa|LINE|L1 17225 NM_001363548 27181 Hs.447899 NM_014442 ENSG00000105366 SIGLEC8 SAF2|SIGLEC-8|SIGLEC8L sialic acid binding Ig like lectin 8 protein-coding 225.833-23 chr7 72495022 72495467 + 1 NA Intergenic Intergenic -48101 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 237.333-22 chr2 188120547 188120839 + 1 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 166998 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 194.5-46 chr7 100939874 100940113 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -9541 NM_005960 4584 Hs.703577 NM_005960 ENSG00000169894 MUC3A MUC-3A|MUC3 mucin 3A, cell surface associated protein-coding 204.833-7 chr12 9636785 9637206 + 1 NA intron (NR_046448, intron 1 of 4) MER61-int|LTR|ERV1 3576 NR_046448 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 191.333-18 chr19 27861163 27861439 + 1 NA intron (NR_146734, intron 1 of 7) HSAT4|Satellite|centr -67361 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 202.667-43 chr9 109563061 109563372 + 1 NA Intergenic L1MEc|LINE|L1 -51671 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 208.833-8 chr14 55127467 55127871 + 1 NA Intergenic Intergenic -1583 NM_001357678 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 237.667-20 chr2 123044532 123044909 + 1 NA Intergenic Intergenic 28761 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 216.667-19 chr17 32366971 32367359 + 1 NA intron (NM_003457, intron 8 of 10) intron (NM_003457, intron 8 of 10) 17027 NM_001098507 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 280.667-8 chr17 9050891 9051183 + 1 NA intron (NM_004822, intron 2 of 6) intron (NM_004822, intron 2 of 6) 29527 NM_004822 9423 Hs.660885 NM_004822 ENSG00000065320 NTN1 MRMV4|NTN1L netrin 1 protein-coding 243.5-32 chr8 137192632 137192894 + 1 NA Intergenic L1ME3A|LINE|L1 220825 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 338.667-10 chr4 58639740 58640145 + 1 NA Intergenic L2a|LINE|L2 -103614 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 227.833-2 chr10 44941281 44941692 + 1 NA intron (NR_033842, intron 1 of 7) L1MB7|LINE|L1 18203 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 219.333-37 chr6 48712638 48713093 + 1 NA Intergenic L2|LINE|L2 -644176 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 207.833-12 chr2 24735569 24735792 + 1 NA intron (NM_001362950, intron 17 of 23) L3|LINE|CR1 -57435 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 188.5-2 chr1 25888355 25888755 + 1 NA intron (NM_001145454, intron 4 of 4) intron (NM_001145454, intron 4 of 4) -17302 NM_178422 164091 Hs.523652 NM_178422 ENSG00000182749 PAQR7 MPRA|PGLP|mSR progestin and adipoQ receptor family member 7 protein-coding 327.5-6 chr14 62317747 62318383 + 1 NA Intergenic Intergenic -178092 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 191.333-30 chr3 143775582 143775936 + 1 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 72709 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 264.333-27 chr7 44846121 44846641 + 1 NA intron (NM_012412, intron 1 of 4) AluSc|SINE|Alu 1745 NM_138635 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 343.5-12 chr3 128227724 128228200 + 1 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) -74048 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 402.333-3 chr22 29830536 29831250 + 1 NA intron (NM_001369940, intron 1 of 19) L2b|LINE|L2 7381 NM_001369926 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 183.5 chr1 12217557 12217841 + 1 NA Intergenic L2a|LINE|L2 -12331 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 252.5-18 chr5 105289062 105289498 + 1 NA Intergenic Intergenic 189806 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 356.167-5 chr12 120293245 120293782 + 1 NA promoter-TSS (NR_003925) promoter-TSS (NR_003925) -276 NR_003925 26835 NR_003925 ENSG00000200795 RNU4-1 RNU4A|RNU4B2|U4|U4BL RNA, U4 small nuclear 1 snRNA 197.333-17 chr2 178449737 178450106 + 1 NA intron (NM_001139517, intron 1 of 6) intron (NM_001139517, intron 1 of 6) 707 NM_001139518 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 199.667-21 chr2 85540828 85541075 + 1 NA intron (NM_005911, intron 1 of 8) intron (NM_005911, intron 1 of 8) 1783 NM_005911 4144 Hs.516157 NM_005911 ENSG00000168906 MAT2A MATA2|MATII|SAMS2 methionine adenosyltransferase 2A protein-coding 462.333-4 chr4 35027323 35027978 + 1 NA Intergenic L1MEf|LINE|L1 -757903 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 208.667-39 chr6 84187070 84187468 + 1 NA intron (NM_001286206, intron 11 of 26) intron (NM_001286206, intron 11 of 26) 40374 NM_001286206 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 258.5-10 chr12 102165678 102166287 + 1 NA intron (NR_135123, intron 4 of 4) intron (NR_135123, intron 4 of 4) 31851 NM_002674 5367 Hs.707990 NM_002674 ENSG00000183395 PMCH MCH|ppMCH pro-melanin concentrating hormone protein-coding 174.333-30 chr4 98511677 98511983 + 1 NA intron (NM_005723, intron 1 of 7) MER33|DNA|hAT-Charlie 146781 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 190.5-13 chr14 44597277 44597607 + 1 NA Intergenic Intergenic 90033 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 174.5-43 chr9 130858448 130858691 + 1 NA intron (NM_007313, intron 3 of 10) intron (NM_007313, intron 3 of 10) 23315 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 175.667-22 chr17 60743618 60743863 + 1 NA intron (NM_001330413, intron 5 of 25) intron (NM_001330413, intron 5 of 25) 65889 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 240.667-24 chr2 176902313 176902851 + 1 NA Intergenic MIRb|SINE|MIR 264828 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 234.333-22 chr22 19966206 19966640 + 1 NA intron (NM_007310, intron 3 of 3) L1MD3|LINE|L1 2670 NR_039918 100616414 NR_039918 ENSG00000284031 MIR4761 - microRNA 4761 ncRNA 321.5-8 chr13 47810887 47811720 + 1 NA Intergenic MLT2B1|LTR|ERVL 121319 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 290.667-26 chr9 127607762 127608146 + 1 NA Intergenic Intergenic -4323 NM_003165 6812 Hs.288229 NM_003165 ENSG00000136854 STXBP1 MUNC18-1|NSEC1|P67|RBSEC1|UNC18 syntaxin binding protein 1 protein-coding 279.667-7 chr14 26276902 26277285 + 1 NA Intergenic Intergenic 276337 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 248.5-41 chr9 126813580 126814031 + 1 NA intron (NM_014007, intron 2 of 2) L1MEc|LINE|L1 8765 NM_014007 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 237.667-42 chrX 24268817 24269182 + 1 NA Intergenic Intergenic 44394 NM_001136233 170067 Hs.716893 NM_001136233 SUPT20HL2 FAM48B1|FAM48B2 SUPT20H like 2 protein-coding 226.333-2 chr10 56804865 56805247 + 1 NA Intergenic Intergenic -443783 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 238.5-4 chr10 28900802 28901163 + 1 NA Intergenic Intergenic 54574 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 240.667-27 chr3 169086928 169087335 + 1 NA intron (NM_001163999, intron 14 of 14) intron (NM_001163999, intron 14 of 14) 58392 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 177.333-14 chr19 42605159 42605405 + 1 NA intron (NR_073180, intron 2 of 2) intron (NR_073180, intron 2 of 2) -10358 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 165.333-37 chr5 51012425 51012737 + 1 NA Intergenic MER20|DNA|hAT-Charlie -42394 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 188.5 chr1 14602718 14603052 + 1 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 4168 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 194.667-49 chr6 22477790 22478142 + 1 NA Intergenic (AATTAT)n|Simple_repeat|Simple_repeat -91600 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 183.333-41 chr21 21091432 21091745 + 1 NA intron (NM_001352595, intron 1 of 14) THE1B|LTR|ERVL-MaLR -55574 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 179.667-24 chr2 184761201 184761422 + 1 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 162782 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 200.833-29 chrX 49155944 49156354 + 1 NA Intergenic Intergenic -6694 NM_001099682 79917 Hs.193170 NM_024859 ENSG00000269313 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 241.333-27 chr5 68266567 68267005 + 1 NA intron (NM_181523, intron 2 of 15) MIRb|SINE|MIR -21733 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 249.833-13 chr20 49109881 49110162 + 1 NA Intergenic L1MB3|LINE|L1 63709 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 214.333-28 chr3 54837791 54838075 + 1 NA intron (NM_018398, intron 15 of 37) MLT1C|LTR|ERVL-MaLR 63322 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 201.667-50 chr7 35613408 35613837 + 1 NA Intergenic Intergenic 81513 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 291.5-32 chr8 106591588 106591992 + 1 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -66018 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 318.167 chr10 230521 230925 + 1 NA intron (NM_001370102, intron 4 of 14) MamGypsy2-I|LTR|Gypsy 50729 NM_001202468 10771 Hs.292265 NM_006624 ENSG00000015171 ZMYND11 BRAM1|BS69|MRD30 zinc finger MYND-type containing 11 protein-coding 207.5-38 chr9 27815171 27815467 + 1 NA Intergenic L1MA4A|LINE|L1 -241453 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 199.167-3 chr11 27391311 27391734 + 1 NA intron (NM_018490, intron 3 of 17) intron (NM_018490, intron 3 of 17) -28274 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 247.5-5 chr12 22502773 22503169 + 1 NA intron (NM_001286175, intron 10 of 27) intron (NM_001286175, intron 10 of 27) 41226 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 171.333-55 chr8 133127358 133127580 + 1 NA intron (NM_003235, intron 45 of 47) intron (NM_003235, intron 45 of 47) -24867 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 177.667-22 chr2 33856693 33856941 + 1 NA intron (NR_126403, intron 2 of 5) AluYc|SINE|Alu -128600 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 163.667-28 chr2 159972527 159972727 + 1 NA intron (NM_001007267, intron 17 of 26) intron (NM_001007267, intron 17 of 26) -67871 NM_001198760 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 197.5-28 chr4 164443195 164443427 + 1 NA Intergenic Intergenic -60056 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 289.167-5 chr10 115470541 115470915 + 1 NA intron (NM_207303, intron 24 of 28) intron (NM_207303, intron 24 of 28) 377363 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 178.833-28 chr3 4379873 4380302 + 1 NA intron (NM_001164674, intron 6 of 7) intron (NM_001164674, intron 6 of 7) 76783 NM_006515 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 241.667-30 chr8 114489436 114489972 + 1 NA Intergenic Intergenic -1052765 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 177.333-12 chr17 50362108 50362527 + 1 NA Intergenic MIR|SINE|MIR 10867 NM_016504 51264 Hs.7736 NM_016504 ENSG00000108826 MRPL27 L27mt mitochondrial ribosomal protein L27 protein-coding 194.5-40 chr4 134034961 134035303 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 166657 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 256.833-3 chr1 212073996 212074484 + 1 NA intron (NM_001286229, intron 9 of 12) (AT)n|Simple_repeat|Simple_repeat -3373 NR_036068 100422947 NR_036068 ENSG00000264358 MIR3122 mir-3122 microRNA 3122 ncRNA 212.333-36 chrX 54874809 54875274 + 1 NA Intergenic MER90|LTR|ERV1 -45522 NM_001271183 7216 Hs.633653 NM_016157 ENSG00000067445 TRO MAGE-d3|MAGED3 trophinin protein-coding 193.5-50 chr8 110848257 110848647 + 1 NA Intergenic Intergenic 178981 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 273.667-8 chr16 65488079 65488419 + 1 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 88051 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 311.5-24 chrX 131633137 131633728 + 1 NA Intergenic AluSg|SINE|Alu 89358 NM_001004486 347468 Hs.553711 NM_001004486 ENSG00000171054 OR13H1 ORX1 olfactory receptor family 13 subfamily H member 1 protein-coding 185.5-24 chr2 209322293 209322504 + 1 NA Intergenic Intergenic -101649 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 213.667-44 chr8 89175055 89175289 + 1 NA Intergenic Intergenic 582539 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 291.5-22 chr3 34660727 34661456 + 1 NA Intergenic AluJo|SINE|Alu 732932 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 289.667-11 chr2 20930800 20931225 + 1 NA Intergenic Intergenic -107882 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 211.333-29 chr3 110211942 110212192 + 1 NA Intergenic L1MA3|LINE|L1 609239 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 245.333-16 chr2 21290531 21290902 + 1 NA Intergenic Intergenic 166730 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 269.5-2 chr1 208547907 208548410 + 1 NA Intergenic Intergenic -180530 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 224.333-8 chr12 6672865 6673129 + 1 NA intron (NM_001135734, intron 7 of 10) intron (NM_001135734, intron 7 of 10) -9878 NM_016162 51147 Hs.524210 NM_016162 ENSG00000111653 ING4 my036|p29ING4 inhibitor of growth family member 4 protein-coding 284.667-8 chr15 88851714 88852087 + 1 NA exon (NM_001135, exon 11 of 16) exon (NM_001135, exon 11 of 16) 43644 NM_178232 145864 Hs.447530 NM_178232 ENSG00000140511 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 216.167-13 chr13 107649983 107650333 + 1 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -118910 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 186.333-14 chr14 46804734 46805083 + 1 NA Intergenic L1MD|LINE|L1 -153127 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 218.5-11 chr12 49018332 49018855 + 1 NA TTS (NM_003482) TTS (NM_003482) 183 NM_002733 5571 Hs.530862 NM_002733 ENSG00000181929 PRKAG1 AMPKG protein kinase AMP-activated non-catalytic subunit gamma 1 protein-coding 181.5-12 chr13 32243313 32243533 + 1 NA intron (NM_023037, intron 46 of 60) L1ME4a|LINE|L1 68531 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 202.5-19 chr13 112829816 112830200 + 1 NA intron (NM_032189, intron 12 of 28) intron (NM_032189, intron 12 of 28) -75277 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 222.667-12 chr13 63063705 63063974 + 1 NA Intergenic Intergenic -256480 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 171.667-57 chr8 68183324 68183518 + 1 NA intron (NM_024870, intron 35 of 39) intron (NM_024870, intron 35 of 39) -146952 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 222.333-18 chr2 82930695 82930990 + 1 NA Intergenic Intergenic 74039 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 224.5-25 chr2 235051378 235051778 + 1 NA intron (NM_001371302, intron 4 of 5) intron (NM_001371302, intron 4 of 5) 23843 NM_001371306 266.667-24 chr8 117840321 117840712 + 1 NA intron (NM_000127, intron 1 of 10) AluSq2|SINE|Alu 80397 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 428.5 chr10 28938398 28939221 + 1 NA Intergenic Intergenic 92401 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 196.667-47 chrX 46267604 46267963 + 1 NA Intergenic L3|LINE|CR1 59891 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 223.5-32 chr8 140465806 140466246 + 1 NA Intergenic FLAM_A|SINE|Alu -7447 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 285.333-11 chr6 141955848 141956141 + 1 NA Intergenic LTR38|LTR|ERV1 132805 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 219.5-21 chr4 88369101 88369380 + 1 NA Intergenic AluJo|SINE|Alu -9499 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 271.667-3 chr1 184154514 184155014 + 1 NA Intergenic Intergenic 103034 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 218.333-19 chr3 49543494 49543816 + 1 NA Intergenic HERVFH19-int|LTR|ERV1 10711 NR_038866 100132677 Hs.435651 NR_038866 ENSG00000226913 BSN-DT BSN-AS2 BSN divergent transcript ncRNA 227.167-15 chr2 70585420 70585842 + 1 NA Intergenic Intergenic -31805 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 265.667-2 chr1 61119779 61120092 + 1 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 37374 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 322.667-10 chr14 70074885 70075335 + 1 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) 5107 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 240.333-5 chr13 112967647 112968075 + 1 NA non-coding (NR_034002, exon 1 of 1) non-coding (NR_034002, exon 1 of 1) 777 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 171.5-23 chr19 58115226 58115493 + 1 NA intron (NR_027135, intron 1 of 1) intron (NR_027135, intron 1 of 1) 3067 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 198.333-34 chr5 34553799 34554134 + 1 NA Intergenic Intergenic -102362 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 352.167-5 chr2 53767743 53768224 + 1 NA exon (NM_001008708, exon 1 of 3) exon (NM_001008708, exon 1 of 3) 179 NM_001008708 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 353.833-2 chr1 44040657 44041192 + 1 NA Intergenic Charlie1|DNA|hAT-Charlie -9462 NM_001328630 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 201.333-41 chr5 35607447 35607672 + 1 NA Intergenic L1MEf|LINE|L1 -10304 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 174.333-6 chr10 31556494 31556856 + 1 NA Intergenic L1MA7|LINE|L1 -156920 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 270.5-29 chr4 111801653 111801945 + 1 NA Intergenic Intergenic -343655 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 325.333-5 chr16 76314029 76314475 + 1 NA intron (NM_138994, intron 1 of 22) MER41C|LTR|ERV1 4400 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 246.167-28 chr4 114780123 114780490 + 1 NA Intergenic L1MA4|LINE|L1 123547 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 304.5-18 chr4 82223495 82223834 + 1 NA Intergenic Intergenic 150327 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 165.167-40 chr6 47703577 47703773 + 1 NA intron (NM_153838, intron 1 of 9) Charlie22a|DNA|hAT-Charlie 5095 NM_153838 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 210.667-51 chr7 113403124 113403592 + 1 NA Intergenic Intergenic -284776 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 433.5-3 chr1 77533914 77534531 + 1 NA intron (NM_012093, intron 12 of 13) intron (NM_012093, intron 12 of 13) 148436 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 362.333-4 chr12 101297226 101297678 + 1 NA intron (NM_014503, intron 12 of 61) AluJb|SINE|Alu 17347 NM_014503 27340 Hs.295732 NM_014503 ENSG00000120800 UTP20 1A6/DRIM|DRIM UTP20 small subunit processome component protein-coding 166.5-34 chr5 180605753 180605995 + 1 NA intron (NM_182925, intron 29 of 29) LTR16D|LTR|ERVL -14375 NM_052863 92304 Hs.62492 NM_052863 ENSG00000161055 SCGB3A1 HIN-1|HIN1|LU105|PnSP-2|UGRP2 secretoglobin family 3A member 1 protein-coding 405.5-2 chr13 20053306 20054089 + 1 NA intron (NM_197968, intron 14 of 24) intron (NM_197968, intron 14 of 24) -49004 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 251.333-29 chr8 78414056 78414534 + 1 NA Intergenic Intergenic -102045 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 199.667-34 chr4 171038353 171038627 + 1 NA Intergenic L1MEg|LINE|L1 -2112 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 180.333-34 chr20 53678282 53678593 + 1 NA Intergenic Intergenic 70083 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 171.333-17 chr15 39125870 39126047 + 1 NA Intergenic L1PA4|LINE|L1 -124711 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 216.333-39 chr6 77563625 77563997 + 1 NA Intergenic Intergenic -86463 NM_001282136 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 292.167-18 chr5 175549946 175550403 + 1 NA Intergenic MER57A-int|LTR|ERV1 71614 NM_001322980 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 190.333-41 chr9 72854632 72854847 + 1 NA Intergenic MIRb|SINE|MIR 19370 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 229.667-36 chr5 148026711 148027241 + 1 NA Intergenic L1MEg2|LINE|L1 -36996 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 167.333-7 chr10 121684679 121684954 + 1 NA Intergenic Intergenic -86358 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 301.667-16 chr4 77699598 77700075 + 1 NA Intergenic Intergenic 119228 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 373.5-3 chr15 74842639 74843183 + 1 NA TTS (NM_005697) TTS (NM_005697) 245 NR_104309 25989 Hs.513034 NM_001099436 ENSG00000140474 ULK3 - unc-51 like kinase 3 protein-coding 234.5-29 chr3 118165437 118165873 + 1 NA Intergenic L1MB8|LINE|L1 -474730 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 166.667-43 chr4 34338369 34338572 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -68723 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 184.667-17 chr14 62646874 62647257 + 1 NA Intergenic Charlie7|DNA|hAT-Charlie 398393 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 306.5-3 chr10 59004295 59004908 + 1 NA Intergenic Intergenic 5083 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 184.667-2 chr1 58415917 58416160 + 1 NA Intergenic Intergenic 130688 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 208.5-7 chr12 92570091 92570489 + 1 NA Intergenic Intergenic 103611 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 188.667-31 chr3 4678682 4679095 + 1 NA intron (NM_001168272, intron 23 of 60) intron (NM_001168272, intron 23 of 60) 72702 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 276.667-18 chr3 193662841 193663248 + 1 NA intron (NM_130831, intron 23 of 27) intron (NM_130831, intron 23 of 27) -35712 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 236.5-3 chr10 32216095 32216429 + 1 NA Intergenic AluJr|SINE|Alu 130896 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 195.333-21 chr4 30433310 30433696 + 1 NA Intergenic Intergenic -286866 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 262.333-11 chr17 7394778 7395061 + 1 NA promoter-TSS (NM_020360) promoter-TSS (NM_020360) -394 NM_001369422 57048 Hs.534591 NM_020360 ENSG00000187838 PLSCR3 - phospholipid scramblase 3 protein-coding 209.667-39 chr6 71331735 71331987 + 1 NA Intergenic Intergenic 43050 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 191.667-34 chr3 86069977 86070353 + 1 NA 3' UTR (NM_001167675, exon 10 of 10) 3' UTR (NM_001167675, exon 10 of 10) -242115 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 213.833-17 chr5 157457971 157458211 + 1 NA intron (NR_136204, intron 1 of 3) LTR64|LTR|ERV1 -1928 NM_001099287 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA like domain containing 4 protein-coding 262.167-10 chr3 135762473 135762920 + 1 NA Intergenic MamGypLTR1d|LTR|Gypsy -203032 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 247.167 chr1 116151731 116152147 + 1 NA Intergenic Intergenic 40184 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 214.667-3 chr11 61812789 61813169 + 1 NA intron (NM_013402, intron 2 of 11) intron (NM_013402, intron 2 of 11) 2261 NR_031729 100302263 NR_031729 ENSG00000284416 MIR1908 MIRN1908|hsa-mir-1908|mir-1908 microRNA 1908 ncRNA 286.667-15 chr21 18137884 18138190 + 1 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -106796 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 277.5-10 chr2 153429401 153429966 + 1 NA Intergenic Intergenic 49079 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 202.5-34 chr21 32849185 32849590 + 1 NA Intergenic Intergenic -35684 NM_019596 56245 Hs.517235 NM_019596 ENSG00000205929 C21orf62 B37|C21orf120|PRED81 chromosome 21 open reading frame 62 protein-coding 255.5-4 chr1 204739250 204739623 + 1 NA Intergenic L1MB8|LINE|L1 -53698 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 175.667 chr1 68203839 68204198 + 1 NA intron (NM_024911, intron 1 of 11) intron (NM_024911, intron 1 of 11) -20408 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 207.5-2 chr1 112748979 112749320 + 1 NA Intergenic L1ME1|LINE|L1 28582 NM_001004440 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 353.5-10 chr2 165930191 165930679 + 1 NA intron (NM_024753, intron 8 of 28) intron (NM_024753, intron 8 of 28) -3422 NR_038983 100506134 Hs.672319 NR_038983 TTC21B-AS1 - TTC21B antisense RNA 1 ncRNA 270.833-16 chr5 140144059 140144442 + 1 NA Intergenic Intergenic -13069 NR_130738 101929719 Hs.150064 NR_130738 ENSG00000254363 LOC101929719 - uncharacterized LOC101929719 ncRNA 244.333-29 chr5 163370257 163370637 + 1 NA Intergenic L1MC5a|LINE|L1 -67124 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 175.167-22 chr2 57373747 57374068 + 1 NA Intergenic Intergenic -533744 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 271.833-12 chr6 43143710 43144127 + 1 NA intron (NM_152882, intron 13 of 18) intron (NM_152882, intron 13 of 18) -27351 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 333.5-14 chr20 9176124 9176510 + 1 NA intron (NM_001172646, intron 1 of 37) L1ME1|LINE|L1 -41073 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 251.5-23 chr7 76415071 76415346 + 1 NA intron (NM_007155, intron 1 of 8) AluSx|SINE|Alu -5511 NM_080744 136853 Hs.567684 NM_080744 ENSG00000146700 SSC4D S4D-SRCRB|SRCRB-S4D|SRCRB4D scavenger receptor cysteine rich family member with 4 domains protein-coding 189.667-29 chr2 211233256 211233646 + 1 NA Intergenic Intergenic 615880 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 190.667-41 chr3 190734415 190734663 + 1 NA Intergenic Intergenic 128155 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 232.667-9 chr11 88930461 88930805 + 1 NA intron (NM_001143831, intron 1 of 8) AluSq2|SINE|Alu 117439 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 181.333-32 chr4 78046440 78046892 + 1 NA Intergenic Intergenic -10657 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 195.167 chr1 116736775 116737421 + 1 NA Intergenic Intergenic -17332 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 243.667-12 chr14 52327234 52327558 + 1 NA exon (NM_000956, exon 2 of 2) exon (NM_000956, exon 2 of 2) 13084 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 163.5-16 chr15 39808891 39809136 + 1 NA intron (NM_001271854, intron 1 of 3) intron (NM_001271854, intron 1 of 3) 20263 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 173.167-36 chr5 154240581 154240939 + 1 NA intron (NM_198321, intron 1 of 11) intron (NM_198321, intron 1 of 11) 50027 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 378.667-12 chr5 170216442 170217051 + 1 NA Intergenic MIRb|SINE|MIR -16239 NR_161261 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 247.333-24 chr8 57994550 57994933 + 1 NA 5' UTR (NM_147189, exon 1 of 5) 5' UTR (NM_147189, exon 1 of 5) 218 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 480.166-2 chr22_KI270879v1_alt 266246 267144 + 1 NA promoter-TSS (NM_001355).2 promoter-TSS (NM_001355).2 -581 NM_001144931 391322 Hs.678440 NM_001144931 LOC391322 - D-dopachrome tautomerase-like protein-coding 202.667-11 chr14 70565610 70565830 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -30716 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 167.333-14 chr11 77234386 77234628 + 1 NA intron (NM_182833, intron 13 of 16) L1PA17|LINE|L1 67159 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 253.5-37 chrX 134580104 134580434 + 1 NA intron (NM_001316889, intron 1 of 1) intron (NM_001316889, intron 1 of 1) 30245 NR_038998 100506757 Hs.130961 NR_038998 LINC00629 LINC00629A|LINC00629B|LINC00629C|LINC00629D long intergenic non-protein coding RNA 629 ncRNA 210.667-26 chr2 13695262 13695624 + 1 NA Intergenic Intergenic -688430 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 234.5-38 chr9 34376953 34377436 + 1 NA promoter-TSS (NM_020702) promoter-TSS (NM_020702) -296 NM_020702 57462 Hs.522083 NM_020702 ENSG00000164976 MYORG IBGC7|KIAA1161|NET37 myogenesis regulating glycosidase (putative) protein-coding 174.333-37 chr6 164070421 164070615 + 1 NA Intergenic Intergenic -399034 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 219.333-42 chr8 67568264 67568691 + 1 NA intron (NM_020361, intron 2 of 10) L1M3b|LINE|L1 177883 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 214.333-7 chr11 93170180 93170402 + 1 NA intron (NM_152313, intron 6 of 10) intron (NM_152313, intron 6 of 10) 27135 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 192.333-11 chr12 50676560 50676964 + 1 NA intron (NM_173602, intron 7 of 37) intron (NM_173602, intron 7 of 37) -87339 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 183.5-24 chr20 34834318 34834517 + 1 NA promoter-TSS (NR_002165) promoter-TSS (NR_002165) 45 NR_002165 128872 Hs.558624 NR_002165 HMGB3P1 HMG4L|HMGB3L1|dJ18C9.3 high mobility group box 3 pseudogene 1 pseudo 221.833-16 chr5 104839640 104840039 + 1 NA Intergenic Intergenic -259635 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 337.5-2 chr10 104582194 104582693 + 1 NA Intergenic Intergenic -58847 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 337.833-10 chr6 106431241 106431644 + 1 NA intron (NM_001371242, intron 1 of 21) L1PA16|LINE|L1 25806 NR_134603 105377924 Hs.741855 NR_134603 ENSG00000282408 LOC105377924 - uncharacterized LOC105377924 ncRNA 284.833-10 chr2 40745729 40746346 + 1 NA Intergenic Intergenic -233602 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 207.833-21 chr5 131770740 131770947 + 1 NA intron (NM_133372, intron 1 of 17) intron (NM_133372, intron 1 of 17) 26174 NM_133372 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 212.667-24 chr2 117470833 117471215 + 1 NA Intergenic LTR9|LTR|ERV1 -343667 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 254.667-19 chr2 237076265 237076663 + 1 NA Intergenic LTR33|LTR|ERVL -8977 NM_198189 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 223.667-45 chr7 38104364 38104789 + 1 NA Intergenic L1MEd|LINE|L1 -73669 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 222.5-16 chr15 97842777 97843150 + 1 NA intron (NR_024172, intron 1 of 2) Zaphod|DNA|hAT-Tip100 31466 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 326.667-6 chr22 28524854 28525245 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 65180 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 204.5-7 chr11 42986425 42986682 + 1 NA Intergenic Intergenic 282816 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 238.667-27 chr9 74641952 74642284 + 1 NA intron (NM_006914, intron 3 of 9) intron (NM_006914, intron 3 of 9) 26584 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 208.667-43 chr7 7398585 7398996 + 1 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 137083 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 212.333-19 chr3 71338753 71339173 + 1 NA intron (NM_001349340, intron 3 of 19) intron (NM_001349340, intron 3 of 19) -34192 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 337.833 chr1 67425487 67425987 + 1 NA intron (NM_001018068, intron 2 of 7) intron (NM_001018068, intron 2 of 7) 4665 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 253.667-11 chr13 50909514 50910109 + 1 NA 5' UTR (NM_024570, exon 1 of 11) 5' UTR (NM_024570, exon 1 of 11) 133 NM_001142279 79621 Hs.306291 NM_024570 ENSG00000136104 RNASEH2B AGS2|DLEU8 ribonuclease H2 subunit B protein-coding 324.333-2 chr12 44495693 44496180 + 1 NA Intergenic Intergenic 379725 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 251.333-22 chr4 47124504 47124970 + 1 NA intron (NM_000812, intron 3 of 8) L1M2|LINE|L1 93170 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 249.667-23 chr4 82233077 82233588 + 1 NA Intergenic Intergenic 140659 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 205.667-35 chr5 133714550 133714944 + 1 NA Intergenic Intergenic -102206 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 231.667-28 chr7 82515334 82515792 + 1 NA Intergenic Intergenic -71607 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 309.167-2 chr10 4568131 4568490 + 1 NA Intergenic MER76|LTR|ERVL -87846 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 168.5-4 chr10 44388270 44388478 + 1 NA Intergenic MER113B|DNA|hAT-Charlie -3277 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 234.833-16 chr20 54661861 54662219 + 1 NA Intergenic Intergenic 186447 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 253.833-14 chr7 87794576 87794998 + 1 NA intron (NM_001134406, intron 8 of 9) L1MA2|LINE|L1 -81464 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 238.667-6 chr12 112293859 112294181 + 1 NA intron (NM_001109662, intron 7 of 75) AluJo|SINE|Alu 88411 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 231.167-25 chr4 158961491 158961907 + 1 NA intron (NM_152543, intron 2 of 4) intron (NM_152543, intron 2 of 4) 73530 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 316.333-12 chr2 157110810 157111319 + 1 NA Intergenic L1PB3|LINE|L1 -146641 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 219.5-38 chr9 123530529 123530804 + 1 NA intron (NM_001352968, intron 12 of 18) intron (NM_001352968, intron 12 of 18) -45044 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 166.667-38 chr3 107574553 107574771 + 1 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 51700 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 194.5-30 chr21 36571862 36572216 + 1 NA intron (NM_001146077, intron 1 of 2) intron (NM_001146077, intron 1 of 2) 4530 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 196.5-14 chr15 71195144 71195431 + 1 NA intron (NM_024817, intron 2 of 16) intron (NM_024817, intron 2 of 16) -6228 NR_120351 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 218.5-3 chr1 176075038 176075374 + 1 NA intron (NM_022457, intron 11 of 19) intron (NM_022457, intron 11 of 19) -106666 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 239.833-5 chr17 48670750 48671165 + 1 NA Intergenic Intergenic -38398 NR_029582 406972 NR_029582 ENSG00000210741 MIR196A1 MIRN196-1|MIRN196A1|mir-196a-1 microRNA 196a-1 ncRNA 184.5-10 chr11 11564553 11564881 + 1 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) 57288 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 186.667-22 chr12 55072252 55072546 + 1 NA Intergenic LTR28B|LTR|ERV1 52425 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 172.5-23 chr18 71849035 71849262 + 1 NA Intergenic THE1C-int|LTR|ERVL-MaLR -66922 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 247.5-14 chr15 58380604 58380933 + 1 NA Intergenic Intergenic -51223 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 187.333-28 chr20 24172087 24172614 + 1 NA Intergenic L1MD1|LINE|L1 -27417 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 225.5-21 chr5 130135210 130135587 + 1 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 230933 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 225.333-15 chr13 71615005 71615396 + 1 NA intron (NM_001366712, intron 3 of 11) intron (NM_001366712, intron 3 of 11) 251992 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 219.667-3 chr11 83392093 83392475 + 1 NA Intergenic L1MB3|LINE|L1 -105877 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 293.5-7 chr12 51264009 51264375 + 1 NA intron (NM_001031628, intron 2 of 3) intron (NM_001031628, intron 2 of 3) 6018 NM_001033873 57228 Hs.652389 NM_001031628 ENSG00000170545 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 296.167-6 chr14 29424196 29424689 + 1 NA Intergenic MER65C|LTR|ERV1 502654 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 232.5-8 chr14 76041680 76041925 + 1 NA intron (NR_045664, intron 3 of 7) L1MC5a|LINE|L1 56039 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 207.333-33 chr4 117613814 117614239 + 1 NA intron (NR_125757, intron 2 of 3) (TA)n|Simple_repeat|Simple_repeat 185628 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 227.5-11 chr12 121035689 121036003 + 1 NA intron (NM_198213, intron 1 of 4) intron (NM_198213, intron 1 of 4) 3396 NM_003733 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 164.667-30 chr2 215375210 215375616 + 1 NA intron (NM_212482, intron 37 of 45) intron (NM_212482, intron 37 of 45) 60655 NM_212478 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF fibronectin 1 protein-coding 174.667-24 chr2 28959060 28959311 + 1 NA Intergenic Intergenic -22113 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 214.833-15 chr4 123641451 123641851 + 1 NA Intergenic Intergenic -8340 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 198.333-43 chr7 148081095 148081485 + 1 NA intron (NM_014141, intron 14 of 22) MLT2A1|LTR|ERVL 409611 NR_133930 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 217.167-21 chr6 12233795 12234231 + 1 NA Intergenic Intergenic -56348 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 193.667-26 chr2 13361665 13361881 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -354760 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 182.5-14 chr14 66480435 66480730 + 1 NA Intergenic L4_B_Mam|LINE|RTE-X -5789 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 332.833 chr1 31715166 31715697 + 1 NA Intergenic Intergenic -11414 NM_001856 1307 Hs.368921 NM_001856 ENSG00000084636 COL16A1 447AA|FP1572 collagen type XVI alpha 1 chain protein-coding 264.833-13 chr2 53987687 53988074 + 1 NA intron (NM_001320587, intron 2 of 5) L1MD|LINE|L1 16767 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 193.5-23 chr2 29462094 29462380 + 1 NA intron (NM_004304, intron 4 of 28) Tigger1|DNA|TcMar-Tigger 13140 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 270.5-25 chr3 191247008 191247423 + 1 NA intron (NM_198184, intron 3 of 4) intron (NM_198184, intron 3 of 4) -12610 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 211.667-5 chr10 123804233 123804694 + 1 NA intron (NM_198148, intron 4 of 13) L1ME3A|LINE|L1 87344 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 225.5-25 chr7 6385270 6385723 + 1 NA intron (NM_006908, intron 1 of 5) MIR|SINE|MIR 10969 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 205.333-35 chr3 68793314 68793669 + 1 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 139056 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 183.5-46 chrX 79829740 79830184 + 1 NA Intergenic L1PA14|LINE|L1 -184791 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 338.667-3 chr14 69410094 69410488 + 1 NA intron (NM_001330185, intron 1 of 5) intron (NM_001330185, intron 1 of 5) 11599 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 175.167-19 chr17 48878421 48878706 + 1 NA intron (NR_135674, intron 3 of 3) AluSp|SINE|Alu -14224 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5MC1 ATP5A|ATP5G|ATP5G1 ATP synthase membrane subunit c locus 1 protein-coding 290.667-21 chr8 36632380 36632888 + 1 NA Intergenic Intergenic -151740 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 221.667-17 chr17 58591001 58591350 + 1 NA intron (NM_031272, intron 15 of 31) intron (NM_031272, intron 15 of 31) -46847 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 219.833-15 chr2 60792184 60792521 + 1 NA intron (NM_022894, intron 17 of 21) intron (NM_022894, intron 17 of 21) 36084 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 215.833-24 chr7 132710984 132711328 + 1 NA intron (NR_046323, intron 3 of 4) intron (NR_046323, intron 3 of 4) -47814 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 210.5-39 chr9 129028672 129028921 + 1 NA promoter-TSS (NM_001369913) promoter-TSS (NM_001369913) -443 NM_001287046 56904 Hs.460238 NM_020145 ENSG00000148341 SH3GLB2 PP6569|PP9455|RRIG1 SH3 domain containing GRB2 like, endophilin B2 protein-coding 214.5-12 chr14 63770178 63770430 + 1 NA Intergenic Intergenic -42239 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 277.333-12 chr12 61191187 61191622 + 1 NA Intergenic Intergenic 1001435 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 189.333-38 chr7 36396602 36396886 + 1 NA intron (NM_001284302, intron 2 of 22) intron (NM_001284302, intron 2 of 22) -6387 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 385.667-6 chr2 85889594 85890042 + 1 NA promoter-TSS (NM_001354227) promoter-TSS (NM_001354227) 538 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 168.667-16 chr14 63496985 63497221 + 1 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 11135 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 226.5-3 chr1 20787655 20788065 + 1 NA Intergenic Intergenic -1172 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 206.5-52 chr6 161047365 161047598 + 1 NA intron (NM_005922, intron 2 of 26) Kanga1c|DNA|TcMar-Tc2 55712 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 239.167-14 chr14 67186991 67187434 + 1 NA Intergenic Intergenic -2228 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 165.667-53 chr8 85313421 85313637 + 1 NA Intergenic Intergenic 28185 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 443.5-6 chr22 24915535 24916307 + 1 NA intron (NM_001098498, intron 21 of 23) intron (NM_001098498, intron 21 of 23) 30774 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 166.167-20 chr2 45491538 45491816 + 1 NA intron (NM_018079, intron 14 of 20) intron (NM_018079, intron 14 of 20) 119590 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 252.5-24 chr7 81793204 81793568 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -23339 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 185.5-23 chr2 138302715 138302909 + 1 NA Intergenic Intergenic -198958 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 226.5-15 chr14 103293034 103293569 + 1 NA Intergenic AluJb|SINE|Alu -23983 NR_135269 105378183 Hs.132624 NR_135269 LOC105378183 - uncharacterized LOC105378183 ncRNA 284.833-8 chr18 32919058 32919554 + 1 NA Intergenic MLT2D|LTR|ERVL -146283 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 185.833-29 chr8 42220816 42221325 + 1 NA Intergenic AluSz|SINE|Alu -13505 NM_001319189 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 169.667-20 chr11 68216401 68216620 + 1 NA Intergenic Intergenic -2862 NM_001300909 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 526.666 chr3 79846741 79847660 + 1 NA Intergenic (T)n|Simple_repeat|Simple_repeat -79202 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 309.333-20 chr6 100573529 100574036 + 1 NA intron (NM_006828, intron 36 of 41) intron (NM_006828, intron 36 of 41) -110107 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 165.667-31 chr2 129248203 129248443 + 1 NA intron (NR_122040, intron 2 of 4) MLT1J1|LTR|ERVL-MaLR 25568 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 241.833-8 chr21 28749049 28749434 + 1 NA Intergenic Intergenic 136126 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 171.333-46 chr6 41546042 41546329 + 1 NA promoter-TSS (NR_126417) promoter-TSS (NR_126417) 58 NR_126417 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 182.333-12 chr19 47979247 47979501 + 1 NA intron (NM_001128326, intron 3 of 5) intron (NM_001128326, intron 3 of 5) 12796 NM_001128326 100131137 Hs.651072 NM_001128326 ENSG00000188334 BSPH1 BSP1|ELSPBP2 binder of sperm protein homolog 1 protein-coding 170.167-42 chr9 27055510 27055769 + 1 NA exon (NM_001349928, exon 17 of 20) exon (NM_001349928, exon 17 of 20) -49967 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 316.5-23 chr5 167259284 167259851 + 1 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -91166 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 242.333-5 chr10 91271116 91271466 + 1 NA intron (NM_001256549, intron 8 of 9) intron (NM_001256549, intron 8 of 9) 50628 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 179.333-7 chr11 76357688 76358013 + 1 NA intron (NM_004705, intron 3 of 4) L1MEh|LINE|L1 23115 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 235.667-22 chr5 59729743 59730018 + 1 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -26177 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 163.167-42 chr9 23322621 23322810 + 1 NA Intergenic Intergenic 349684 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 305.5-13 chr4 41451982 41452383 + 1 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) -85975 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 271.833-5 chr12 42335415 42335850 + 1 NA intron (NM_201440, intron 2 of 9) intron (NM_201440, intron 2 of 9) 3834 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 242.667-3 chr11 7099999 7100325 + 1 NA Intergenic Intergenic 11164 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 206.667-53 chr7 158973404 158973776 + 1 NA Intergenic CpG -34764 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 309.667-24 chr8 136528715 136529103 + 1 NA Intergenic L1MC1|LINE|L1 -1889 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 187.667-10 chr11 85803226 85803471 + 1 NA intron (NM_001365826, intron 1 of 18) intron (NM_001365826, intron 1 of 18) 7793 NM_001365827 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 301.167-19 chr8 82581391 82581903 + 1 NA Intergenic L1MA4A|LINE|L1 -330457 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 205.667-10 chr12 42220496 42220951 + 1 NA intron (NR_135140, intron 2 of 6) intron (NR_135140, intron 2 of 6) 17645 NR_135139 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 229.667-45 chr8 111708728 111709268 + 1 NA Intergenic Intergenic 332359 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 189.667-16 chr14 42180999 42181302 + 1 NA Intergenic L2a|LINE|L2 574294 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 260.167-18 chr4 61274956 61275401 + 1 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 73006 NM_001371342 205.333-45 chr8 133942592 133942921 + 1 NA Intergenic LTR8B|LTR|ERV1 56260 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 188.667 chr1 111548162 111548481 + 1 NA intron (NM_001370216, intron 1 of 7) HSMAR2|DNA|TcMar-Mariner 6312 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 469.5-3 chr19 3128855 3129754 + 1 NA Intergenic L1MD|LINE|L1 -6729 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 G protein subunit alpha 15 protein-coding 222.667-27 chr3 21958957 21959390 + 1 NA intron (NR_046876, intron 2 of 3) intron (NR_046876, intron 2 of 3) 2034 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 198.333-17 chr14 28940400 28940619 + 1 NA Intergenic Intergenic -154722 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 163.5-45 chr7 28536421 28536682 + 1 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) 100936 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 279.667-20 chr5 28964121 28964548 + 1 NA Intergenic Intergenic 37464 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 281.833-8 chr18 5867234 5867725 + 1 NA Intergenic Charlie1b|DNA|hAT-Charlie 26784 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 217.667 chr1 87290964 87291285 + 1 NA Intergenic Intergenic -37756 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 207.667-33 chr4 118237339 118237720 + 1 NA intron (NM_004784, intron 10 of 13) intron (NM_004784, intron 10 of 13) -41233 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 185.333-19 chr18 7705297 7705482 + 1 NA intron (NM_002845, intron 1 of 30) (TCTC)n|Simple_repeat|Simple_repeat 138073 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 239.667-12 chr12 120531838 120532192 + 1 NA Intergenic AluSx4|SINE|Alu -2341 NM_001330474 9921 Hs.442798 NM_014868 ENSG00000022840 RNF10 RIE2 ring finger protein 10 protein-coding 166.167-18 chr17 75414812 75415045 + 1 NA Intergenic AluSc8|SINE|Alu 8859 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 186.667-4 chr1 53917213 53917423 + 1 NA Intergenic L1MC5a|LINE|L1 23131 NM_213593 1733 Hs.251415 NM_000792 ENSG00000211452 DIO1 5DI|TXDI1 iodothyronine deiodinase 1 protein-coding 186.333-33 chr5 38806863 38807062 + 1 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 38867 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 209.5-20 chr17 59707256 59707605 + 1 NA promoter-TSS (NM_001329399) promoter-TSS (NM_001329399) 168 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 206.167-8 chr13 61622356 61622562 + 1 NA Intergenic Tigger3|DNA|TcMar-Tigger -194513 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 175.333-39 chr3 57943113 57943330 + 1 NA Intergenic Intergenic 53219 NM_001304423 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 219.5-15 chr2 61176878 61177359 + 1 NA promoter-TSS (NR_152211) promoter-TSS (NR_152211) -300 NR_152215 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 178.667-46 chr9 80176062 80176538 + 1 NA Intergenic Intergenic 201277 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 435.167-3 chr17 67824849 67825521 + 1 NA promoter-TSS (NM_004459) promoter-TSS (NM_004459) -318 NM_004459 2186 Hs.444200 NM_004459 ENSG00000171634 BPTF FAC1|FALZ|NEDDFL|NURF301 bromodomain PHD finger transcription factor protein-coding 336.333-9 chr4 30892290 30892710 + 1 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 172131 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 200.333-26 chr22 26835467 26835733 + 1 NA Intergenic Intergenic -24611 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 256.333-6 chr11 110172497 110173107 + 1 NA TTS (NM_033390) TTS (NM_033390) 79410 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 209.167-14 chr14 75712645 75713070 + 1 NA intron (NM_015072, intron 9 of 31) intron (NM_015072, intron 9 of 31) 51611 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 218.833-19 chr5 120531980 120532402 + 1 NA intron (NM_001308088, intron 1 of 3) intron (NM_001308088, intron 1 of 3) 727 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 232.333-5 chr12 47273722 47274008 + 1 NA Intergenic Intergenic 33534 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 246.167-20 chr2 96951106 96951392 + 1 NA intron (NM_001122646, intron 7 of 16) intron (NM_001122646, intron 7 of 16) 32143 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 389.667-7 chr3 165209686 165210362 + 1 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 3064 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 275.667-11 chr19 32891965 32892318 + 1 NA intron (NM_032816, intron 16 of 18) (TA)n|Simple_repeat|Simple_repeat -22374 NM_001243036 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 264.833-5 chr12 1448008 1448502 + 1 NA intron (NR_027948, intron 19 of 19) intron (NR_027948, intron 19 of 19) -52236 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 197.333-39 chr8 87209265 87209704 + 1 NA intron (NM_173538, intron 5 of 10) L1M2|LINE|L1 343069 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 270.167-11 chr2 156333840 156334492 + 1 NA Intergenic CpG -1445 NM_173173 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 179.833-16 chr2 61969130 61969789 + 1 NA intron (NM_152516, intron 1 of 2) intron (NM_152516, intron 1 of 2) 63817 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 285.5-24 chr4 144444717 144445028 + 1 NA Intergenic Intergenic 201147 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 254.5-29 chr4 171497551 171497955 + 1 NA Intergenic Intergenic 141010 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 300.5-23 chr6 155070477 155071262 + 1 NA Intergenic Intergenic -19420 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 221.333-28 chr7 11623294 11623546 + 1 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 208778 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 310.667-8 chr2 63887377 63887820 + 1 NA exon (NM_006759, exon 8 of 10) exon (NM_006759, exon 8 of 10) 45718 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 203.667-6 chr1 218706425 218706701 + 1 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 196468 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 181.667-16 chr15 82832503 82832805 + 1 NA intron (NM_001080435, intron 9 of 9) intron (NM_001080435, intron 9 of 9) 23026 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WASP homolog associated with actin, golgi membranes and microtubules protein-coding 295.667-12 chr2 105236240 105236567 + 1 NA Intergenic Intergenic -5340 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 245.333 chr1 9239813 9240232 + 1 NA intron (NM_001282587, intron 1 of 4) intron (NM_001282587, intron 1 of 4) 175 NM_001282587 9563 Hs.463511 NM_004285 ENSG00000049239 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase protein-coding 217.667-41 chr9 118854338 118854611 + 1 NA Intergenic L1MEf|LINE|L1 174803 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 200.333-31 chr5 45450013 45450333 + 1 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 246207 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 186.5-30 chr7 113582440 113582758 + 1 NA Intergenic Intergenic 336410 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 178.5-20 chr17 69781271 69781537 + 1 NA intron (NR_109972, intron 3 of 4) L1M2|LINE|L1 -180303 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 273.5-10 chr16 84175030 84175530 + 1 NA intron (NM_178452, intron 10 of 11) intron (NM_178452, intron 10 of 11) 11777 NM_005679 9013 Hs.153022 NM_005679 ENSG00000103168 TAF1C MGC:39976|SL1|TAFI110|TAFI95 TATA-box binding protein associated factor, RNA polymerase I subunit C protein-coding 277.333-27 chr3 87239321 87240033 + 1 NA intron (NM_001244644, intron 1 of 4) MIR|SINE|MIR 12368 NM_014043 25978 Hs.476930 NM_014043 ENSG00000083937 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 305.167 chr1 196098316 196098871 + 1 NA Intergenic Tigger2|DNA|TcMar-Tigger -9878 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 193.333-17 chr14 61333023 61333427 + 1 NA intron (NM_006255, intron 1 of 13) Charlie4z|DNA|hAT-Charlie 11782 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 188.667-24 chr2 127197722 127197912 + 1 NA intron (NM_001001665, intron 4 of 7) intron (NM_001001665, intron 4 of 7) 7950 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 187.333-33 chr4 172945613 172946073 + 1 NA intron (NM_001034845, intron 9 of 12) intron (NM_001034845, intron 9 of 12) -218965 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 259.167-12 chr5 43402091 43402476 + 1 NA intron (NM_001301874, intron 1 of 3) LTR41|LTR|ERVL -5146 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 208.5-39 chr6 55420677 55420939 + 1 NA Intergenic Intergenic 93339 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 276.5-14 chr5 143986918 143987202 + 1 NA Intergenic Intergenic 174899 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 199.667-50 chr9 36163381 36163669 + 1 NA non-coding (NR_104637, exon 7 of 7) non-coding (NR_104637, exon 7 of 7) -5863 NM_005893 881 Hs.115460 NM_005893 ENSG00000185972 CCIN BTBD20|KBTBD14 calicin protein-coding 195.333-17 chr2 105846897 105847305 + 1 NA intron (NM_003581, intron 2 of 4) L1MB3|LINE|L1 -4746 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 170.667-24 chr2 215311782 215312123 + 1 NA promoter-TSS (NM_004044) promoter-TSS (NM_004044) -107 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 219.833-18 chr2 192292626 192293028 + 1 NA Intergenic Intergenic -97894 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 280.5-9 chr16 68028276 68028752 + 1 NA intron (NM_017803, intron 2 of 16) AluSx3|SINE|Alu -4647 NM_018380 55794 Hs.458313 NM_018380 ENSG00000182810 DDX28 MDDX28 DEAD-box helicase 28 protein-coding 167.667-38 chr6 50985028 50985233 + 1 NA Intergenic Intergenic 166259 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 271.5-7 chr10 113467896 113468257 + 1 NA Intergenic L1MEc|LINE|L1 -82755 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 165.333-5 chr10 9989408 9989834 + 1 NA Intergenic L1MC5a|LINE|L1 -69101 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 221.5-13 chr20 8724713 8725014 + 1 NA intron (NM_182734, intron 16 of 32) intron (NM_182734, intron 16 of 32) -106322 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 184.5-56 chrX 50905343 50905561 + 1 NA Intergenic Intergenic -5283 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 181.667-43 chr7 8785932 8786246 + 1 NA Intergenic Intergenic 352480 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 169.5-8 chr10 61560972 61561218 + 1 NA Intergenic Intergenic 81054 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 188.667-22 chr2 31233840 31234072 + 1 NA promoter-TSS (NM_014600) promoter-TSS (NM_014600) 1 NM_001321270 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 183.333-45 chr3 111110377 111110604 + 1 NA intron (NM_001243288, intron 1 of 8) intron (NM_001243288, intron 1 of 8) 38674 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 190.833-15 chr2 44268003 44268214 + 1 NA Intergenic Intergenic -7372 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 293.333-10 chr15 71322090 71322527 + 1 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -133249 NR_120351 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 212.667-26 chr2 156701129 156701494 + 1 NA Intergenic Intergenic 264932 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 284.833-7 chr12 111159770 111160250 + 1 NA intron (NM_001370598, intron 1 of 21) AluSx|SINE|Alu 60006 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 216.333-2 chr1 69555837 69556099 + 1 NA Intergenic L1ME3G|LINE|L1 -11366 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 389.833-6 chr4 6087461 6088124 + 1 NA intron (NM_001306134, intron 2 of 11) intron (NM_001306134, intron 2 of 11) -69246 NM_001364690 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 278.5-16 chr3 106332182 106332660 + 1 NA Intergenic LTR37A|LTR|ERV1 -463020 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 255.167-31 chr9 27990082 27990749 + 1 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -416549 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 192.833-7 chr10 105412411 105412778 + 1 NA Intergenic Intergenic 407739 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 250.167-3 chr11 19596056 19596493 + 1 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 20964 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 197.667-47 chr7 109355453 109355763 + 1 NA Intergenic L1MC5|LINE|L1 -471021 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 253.333-21 chr3 132837139 132837648 + 1 NA intron (NR_002811, intron 9 of 10) PRIMA4_LTR|LTR|ERV1 -114934 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 302.5-9 chr14 59698832 59699156 + 1 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -51974 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 307.833 chr10 87936042 87936425 + 1 NA intron (NM_001304717, intron 6 of 9) Charlie24|DNA|hAT-Charlie 72608 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 233.833-15 chr4 139416321 139416643 + 1 NA Intergenic L1ME4a|LINE|L1 37559 NR_159963 107984036 Hs.605782 NR_159963 LOC107984036 - uncharacterized LOC107984036 ncRNA 291.5-12 chr14 51961422 51961992 + 1 NA intron (NM_001243773, intron 3 of 3) L2c|LINE|L2 -27839 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 332.167-4 chr2 191165799 191166384 + 1 NA Intergenic Intergenic -14495 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 246.5-33 chr9 5600716 5601205 + 1 NA Intergenic AluSx1|SINE|Alu -28147 NM_020829 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 225.167-16 chr20 4148706 4148956 + 1 NA promoter-TSS (NM_175839) promoter-TSS (NM_175839) 3 NM_175841 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 209.333-41 chr8 120918458 120918786 + 1 NA Intergenic Intergenic -106576 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 188.333-38 chr6 159173594 159173922 + 1 NA intron (NM_032532, intron 1 of 22) MLT1D|LTR|ERVL-MaLR -3751 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 508.667 chr16 13606328 13607008 + 1 NA Intergenic AluSg|SINE|Alu -313489 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 340.333-12 chr4 139867913 139868389 + 1 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 202332 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 218.667-36 chr8 98512479 98512870 + 1 NA intron (NM_006281, intron 10 of 10) intron (NM_006281, intron 10 of 10) 85716 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 174.667-10 chr11 60902764 60903045 + 1 NA intron (NM_014502, intron 3 of 15) intron (NM_014502, intron 3 of 15) 3681 NM_014502 27339 Hs.502705 NM_014502 ENSG00000110107 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 172.333-7 chr1 168261135 168261394 + 1 NA Intergenic L1PA16|LINE|L1 -13834 NR_026844 84832 Hs.537067 NR_026844 ENSG00000214262 ANKRD36BP1 ANKRD26L1|ANKRD36BL1 ankyrin repeat domain 36B pseudogene 1 pseudo 178.5-4 chr1 184060858 184061131 + 1 NA intron (NR_125335, intron 4 of 5) L1ME3B|LINE|L1 9264 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 218.333-11 chr16 65606226 65606533 + 1 NA Intergenic Intergenic -30079 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 181.5-22 chr19 10324200 10324472 + 1 NA intron (NM_001366174, intron 3 of 13) intron (NM_001366174, intron 3 of 13) -8321 NM_001031734 112812 Hs.654865 NM_080665 ENSG00000267673 FDX2 FDX1L|MEOAL ferredoxin 2 protein-coding 178.167-22 chr4 79912412 79912643 + 1 NA intron (NM_001286781, intron 16 of 16) L1MC5a|LINE|L1 85056 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 270.167-14 chr6 102553317 102553882 + 1 NA Intergenic Intergenic 1154614 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 308.667-5 chr10 114785104 114785594 + 1 NA Intergenic Intergenic -17045 NM_001322884 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 238.167 chr1 48467646 48468074 + 1 NA intron (NM_019073, intron 1 of 12) L1ME2|LINE|L1 4344 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 272.5-17 chr19 52359492 52360120 + 1 NA intron (NM_001161425, intron 5 of 5) MER21A|LTR|ERVL -10117 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 198.333-7 chr10 72757790 72758055 + 1 NA intron (NR_073062, intron 3 of 9) MER34B|LTR|ERV1 36893 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 198.333-36 chr5 96688123 96688522 + 1 NA intron (NM_001330629, intron 2 of 30) intron (NM_001330629, intron 2 of 30) -14338 NM_001330634 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 246.167-10 chr14 83280178 83280691 + 1 NA Intergenic L1MC5|LINE|L1 637802 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 270.167-9 chr15 78500351 78500714 + 1 NA 3' UTR (NM_001320941, exon 21 of 21) 3' UTR (NM_001320941, exon 21 of 21) -7032 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 253.667-9 chr12 77121271 77121553 + 1 NA Intergenic Intergenic -55843 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 219.333-19 chr17 76334865 76335318 + 1 NA intron (NM_001330503, intron 2 of 8) intron (NM_001330503, intron 2 of 8) 18825 NM_001330503 5635 Hs.77498 NM_002766 ENSG00000161542 PRPSAP1 PAP39 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding 170.333-18 chr14 67006549 67006753 + 1 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -182789 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 263.833-9 chr3 124970060 124970729 + 1 NA 3' UTR (NM_020733, exon 17 of 17) 3' UTR (NM_020733, exon 17 of 17) -35643 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 307.5-12 chr16 80167346 80167731 + 1 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) 372289 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 216.667-37 chr5 8442458 8442901 + 1 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 14885 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 206.167-13 chr2 39509196 39509463 + 1 NA intron (NR_037875, intron 3 of 5) LTR16E2|LTR|ERVL 71913 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 358.5 chr1 45339676 45340066 + 1 NA promoter-TSS (NM_001293195) promoter-TSS (NM_001293195) 86 NM_001293195 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 218.5-19 chr14 94665440 94665825 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 24907 NR_015340 388007 Hs.527795 NR_015340 ENSG00000187483 SERPINA13P SERPINA13|UNQ6121 serpin family A member 13, pseudogene pseudo 331.5-8 chr2 51331484 51332136 + 1 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 299209 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 214.333-19 chr19 46061394 46061669 + 1 NA intron (NR_163177, intron 1 of 5) MER57-int|LTR|ERV1 16098 NR_163175 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 192.5-6 chr10 79081345 79081698 + 1 NA intron (NM_020338, intron 1 of 24) intron (NM_020338, intron 1 of 24) 12555 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 390.167-2 chr16 85420608 85421251 + 1 NA Intergenic Intergenic -114604 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 210.667-3 chr1 204805257 204805580 + 1 NA Intergenic FAM|SINE|Alu -23234 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 189.833-14 chr4 74374567 74375000 + 1 NA intron (NM_001432, intron 1 of 4) AmnSINE1|SINE|5S-Deu-L2 9638 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 182.5-7 chr11 62362088 62362351 + 1 NA intron (NM_025080, intron 4 of 6) Zaphod|DNA|hAT-Tip100 24771 NM_001083926 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 248.667-29 chr5 16808220 16808500 + 1 NA intron (NM_012334, intron 3 of 40) AluJr|SINE|Alu 127928 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 200.167-12 chr16 19556433 19556744 + 1 NA intron (NM_001300743, intron 1 of 27) intron (NM_001300743, intron 1 of 27) 885 NM_001365293 57020 Hs.654964 NM_020314 ENSG00000103544 VPS35L C16orf62 VPS35 endosomal protein sorting factor like protein-coding 228.167-6 chr11 89525648 89525994 + 1 NA intron (NM_001143837, intron 2 of 20) L1ME2|LINE|L1 -33602 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 164.667-36 chr3 85988008 85988345 + 1 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -160126 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 243.833-20 chr5 60960276 60960848 + 1 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 15357 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 186.5-12 chr17 59854723 59854937 + 1 NA Intergenic AluSx|SINE|Alu 13564 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 192.333-51 chr8 18798168 18798403 + 1 NA intron (NM_015310, intron 8 of 15) intron (NM_015310, intron 8 of 15) 10582 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 365.5-10 chr2 54574270 54574808 + 1 NA intron (NM_178313, intron 1 of 30) intron (NM_178313, intron 1 of 30) 16145 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 183.667-9 chr11 46009609 46009961 + 1 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 87129 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 168.333-12 chr11 76822130 76822312 + 1 NA Intergenic L1MD2|LINE|L1 30469 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 284.833-2 chr1 84064647 84065010 + 1 NA Intergenic MLT2B3|LTR|ERVL -13147 NM_002731 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 171.333-26 chr2 205889043 205889349 + 1 NA Intergenic Intergenic 196978 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 229.5-27 chr4 22246703 22247044 + 1 NA Intergenic Intergenic 92793 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 168.667-39 chr5 33697285 33697588 + 1 NA intron (NM_001324512, intron 3 of 21) L2c|LINE|L2 194554 NM_001324512 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 229.167-11 chr14 82601982 82602246 + 1 NA Intergenic Intergenic -40518 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 250.667-11 chr15 69679358 69679712 + 1 NA intron (NR_126438, intron 3 of 3) MER20|DNA|hAT-Charlie 87335 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 285.667-15 chr4 55544514 55544842 + 1 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 1254 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 208.5-9 chr13 26843958 26844353 + 1 NA Intergenic L1MEf|LINE|L1 -83369 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 356.333-2 chr10 56617631 56618080 + 1 NA Intergenic L1MD|LINE|L1 -256582 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 221.167-18 chr4 74451115 74451352 + 1 NA intron (NM_001657, intron 4 of 5) intron (NM_001657, intron 4 of 5) 6097 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 252.167-3 chr1 185682417 185682790 + 1 NA Intergenic Intergenic -51788 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 286.167-12 chr20 54167958 54168255 + 1 NA intron (NM_000782, intron 4 of 11) L2c|LINE|L2 5880 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 211.167-19 chr5 10700648 10701100 + 1 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 60360 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 261.667-15 chr2 68039354 68039821 + 1 NA Intergenic Intergenic 23417 NM_173177 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 373.167-10 chr7 103074608 103075133 + 1 NA promoter-TSS (NM_001161011) promoter-TSS (NM_001161011) -11 NM_001161013 83787 Hs.287412 NM_031905 ENSG00000170632 ARMC10 PNAS-112|PNAS112|PSEC0198|SVH armadillo repeat containing 10 protein-coding 263.667-6 chr11 98929685 98930029 + 1 NA Intergenic HERVK22-int|LTR|ERVK -91092 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 264.5-9 chr16 52818599 52818932 + 1 NA Intergenic Intergenic -211790 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 234.667-33 chr8 107328721 107329165 + 1 NA intron (NM_001199859, intron 3 of 8) (ATTATAG)n|Simple_repeat|Simple_repeat 7572 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 185.667-14 chr11 44539262 44539628 + 1 NA Intergenic MIR|SINE|MIR -26218 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 279.833-10 chr5 109951248 109951664 + 1 NA Intergenic Intergenic 68274 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 243.5-27 chr5 107497684 107498143 + 1 NA intron (NM_001962, intron 1 of 4) MER45B|DNA|hAT-Tip100 173024 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 211.333-44 chr6 127226534 127227019 + 1 NA Intergenic Intergenic -39906 NM_001242851 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 266.833-11 chr20 32444267 32444597 + 1 NA 3' UTR (NM_080616, exon 8 of 8) 3' UTR (NM_080616, exon 8 of 8) 39058 NM_080616 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 198.167-29 chr7 52419148 52419618 + 1 NA Intergenic MER57E1|LTR|ERV1 -616250 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 260.333-14 chr21 18671712 18672139 + 1 NA intron (NR_109925, intron 2 of 3) L1MA3|LINE|L1 14239 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 207.333-2 chr1 55126653 55127010 + 1 NA intron (NM_015306, intron 32 of 67) intron (NM_015306, intron 32 of 67) 86609 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 207.5-33 chr6 70689465 70689778 + 1 NA intron (NM_001281440, intron 1 of 10) L1MD2|LINE|L1 21091 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 254.333-10 chr12 99071136 99071631 + 1 NA intron (NM_152788, intron 16 of 25) intron (NM_152788, intron 16 of 25) -21976 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 215.333-32 chr3 138058545 138059011 + 1 NA Intergenic L1MC5|LINE|L1 48613 NM_016369 51208 Hs.655324 NM_016369 ENSG00000066405 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 203.667-50 chr7 96976801 96977301 + 1 NA intron (NR_015448, intron 2 of 2) intron (NR_015448, intron 2 of 2) -28502 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 220.667-8 chr10 61899698 61900111 + 1 NA Intergenic Intergenic -1795 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 174.333-12 chr16 68066533 68066889 + 1 NA intron (NM_017803, intron 10 of 16) intron (NM_017803, intron 10 of 16) -18659 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 224.333-7 chr11 120171987 120172420 + 1 NA TTS (NR_159965) TTS (NR_159965) 3226 NR_159965 107984399 Hs.638417 NR_159965 LOC107984399 - uncharacterized LOC107984399 ncRNA 235.333-24 chr5 159205280 159205767 + 1 NA intron (NM_001199380, intron 1 of 10) intron (NM_001199380, intron 1 of 10) 2125 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 180.833-17 chr4 76551467 76551808 + 1 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -21931 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 203.5-38 chr6 156661953 156662184 + 1 NA Intergenic Intergenic -115787 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 222.5-7 chr1 246840808 246841129 + 1 NA exon (NM_001323342, exon 36 of 36) exon (NM_001323342, exon 36 of 36) 51351 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 169.5-21 chr2 145587472 145587748 + 1 NA Intergenic Intergenic 919643 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 298.667-17 chr3 133385902 133386306 + 1 NA intron (NM_023943, intron 4 of 5) LTR16B|LTR|ERVL -13952 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 230.5-7 chr14 99351417 99351796 + 1 NA Intergenic Intergenic -79409 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 181.5-33 chr4 111555637 111555993 + 1 NA Intergenic Intergenic -589639 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 239.167-27 chr4 29128573 29128900 + 1 NA Intergenic Intergenic -85556 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 209.667-18 chr2 119252849 119253092 + 1 NA intron (NM_138637, intron 3 of 5) intron (NM_138637, intron 3 of 5) -3899 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 321.667-8 chr6 35791487 35792084 + 1 NA intron (NM_001348773, intron 2 of 2) AluJb|SINE|Alu 5538 NM_001252597 1208 Hs.1340 NM_001832 ENSG00000137392 CLPS - colipase protein-coding 235.333-23 chr5 36312633 36313084 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -10956 NM_145000 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 183.333-62 chr8 68576645 68576990 + 1 NA intron (NR_146186, intron 7 of 12) intron (NR_146186, intron 7 of 12) -245326 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 256.833-12 chr5 45605030 45605343 + 1 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 91194 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 286.167-10 chr19 45380698 45381062 + 1 NA intron (NM_006663, intron 12 of 12) intron (NM_006663, intron 12 of 12) -10293 NM_000400 2068 Hs.487294 NM_000400 ENSG00000104884 ERCC2 COFS2|EM9|TFIIH|TTD|TTD1|XPD ERCC excision repair 2, TFIIH core complex helicase subunit protein-coding 197.5-16 chr2 26757971 26758248 + 1 NA Intergenic MER41A|LTR|ERV1 -6175 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 219.333-33 chr5 76403473 76403711 + 1 NA intron (NM_006633, intron 1 of 35) CpG 307 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 349.667 chr1 179298958 179299609 + 1 NA intron (NR_045530, intron 1 of 13) MIRb|SINE|MIR 5486 NM_003101 6646 Hs.445588 NM_003101 ENSG00000057252 SOAT1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT sterol O-acyltransferase 1 protein-coding 211.167-25 chr8 78929131 78929370 + 1 NA Intergenic Tigger12c|DNA|TcMar-Tigger 91721 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 304.5-12 chr19 9079745 9080419 + 1 NA Intergenic AluSx1|SINE|Alu -13163 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor family 1 subfamily M member 1 protein-coding 316.667-12 chr5 136282398 136283046 + 1 NA intron (NM_001167577, intron 2 of 10) intron (NM_001167577, intron 2 of 10) 19134 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 163.5-44 chr7 7654061 7654302 + 1 NA intron (NM_002947, intron 4 of 7) intron (NM_002947, intron 4 of 7) 13429 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 169.667-46 chr5 6823589 6823939 + 1 NA intron (NR_146281, intron 1 of 1) intron (NR_146281, intron 1 of 1) 4157 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 217.667-13 chr11 87964368 87964765 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 210877 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 232.667-21 chr2 148520787 148521251 + 1 NA Intergenic Intergenic -123732 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 191.667-7 chr11 17670169 17670513 + 1 NA Intergenic Intergenic 26598 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 257.833-6 chr3 52231099 52231670 + 1 NA intron (NM_007284, intron 4 of 8) intron (NM_007284, intron 4 of 8) -5221 NM_017442 54106 Hs.87968 NM_017442 ENSG00000239732 TLR9 CD289 toll like receptor 9 protein-coding 176.167-40 chr6 138894568 138894794 + 1 NA intron (NM_001077706, intron 20 of 21) LTR23|LTR|ERV1 93580 NM_001128617 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 167.667-39 chr6 97703875 97704172 + 1 NA intron (NR_110757, intron 4 of 4) intron (NR_110757, intron 4 of 4) -320508 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 209.333-39 chr8 17305975 17306429 + 1 NA intron (NM_004686, intron 10 of 13) intron (NM_004686, intron 10 of 13) 59244 NM_152415 137492 Hs.343873 NM_152415 ENSG00000155975 VPS37A HCRP1|PQBP2|SPG53 VPS37A subunit of ESCRT-I protein-coding 279.833-13 chr6 2572041 2572531 + 1 NA Intergenic L1MC3|LINE|L1 -62214 NR_149119 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 167.833-44 chr7 100053213 100053688 + 1 NA intron (NM_001362780, intron 2 of 4) intron (NM_001362780, intron 2 of 4) 3656 NM_001362779 7589 Hs.632294 NM_145914 ENSG00000166529 ZSCAN21 NY-REN-21|ZNF38|Zipro1 zinc finger and SCAN domain containing 21 protein-coding 167.333-24 chr14 86423509 86423708 + 1 NA Intergenic Intergenic -482170 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 245.667-19 chr4 160228463 160228805 + 1 NA Intergenic Intergenic -450850 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 227.167-20 chr4 12727030 12727467 + 1 NA Intergenic Intergenic 503797 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 353.5-16 chr8 133161979 133162595 + 1 NA Intergenic Intergenic -28752 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 256.333-3 chr1 190537965 190538325 + 1 NA Intergenic L1ME1|LINE|L1 59594 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 188.667-17 chr17 60567517 60567854 + 1 NA intron (NR_126009, intron 2 of 3) FLAM_A|SINE|Alu 3139 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 253.167-24 chr8 108584614 108585049 + 1 NA Intergenic Intergenic 141207 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 289.667-12 chr2 21485376 21485709 + 1 NA Intergenic Intergenic 225110 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 230.5-35 chr9 36426923 36427321 + 1 NA Intergenic L2b|LINE|L2 -25924 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 187.5-39 chr7 136939054 136939269 + 1 NA intron (NR_046103, intron 2 of 3) intron (NR_046103, intron 2 of 3) 35994 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 322.5-27 chr8 40669571 40669993 + 1 NA intron (NM_001135731, intron 4 of 5) Tigger2|DNA|TcMar-Tigger 228044 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 179.667-13 chr17 79019698 79020007 + 1 NA intron (NR_040019, intron 2 of 2) MIR|SINE|MIR -3082 NM_153372 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 260.667-5 chr1 109362506 109362883 + 1 NA intron (NM_001205228, intron 3 of 19) intron (NM_001205228, intron 3 of 19) 30663 NM_001205228 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 173.5-11 chr10 84098033 84098226 + 1 NA Intergenic Intergenic -41380 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 254.167-3 chr10 26792233 26792773 + 1 NA intron (NM_001012752, intron 2 of 9) intron (NM_001012752, intron 2 of 9) 68584 NM_001012752 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 221.333-2 chr10 68205144 68205563 + 1 NA intron (NR_045663, intron 16 of 17) (ATTT)n|Simple_repeat|Simple_repeat 26760 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 223.5-6 chr12 5216288 5216546 + 1 NA Intergenic Intergenic 26734 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 181.667-31 chr20 45860862 45861096 + 1 NA intron (NM_080752, intron 1 of 1) AluJr|SINE|Alu 3365 NM_080752 140831 Hs.292135 NM_080752 ENSG00000132801 ZSWIM3 C20orf164|PPP1R174 zinc finger SWIM-type containing 3 protein-coding 186.833-20 chr7 33432133 33432605 + 1 NA intron (NM_001348037, intron 18 of 20) AluY|SINE|Alu 302805 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 326.5-12 chr21 14346147 14346697 + 1 NA Intergenic MER33|DNA|hAT-Charlie 36724 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 220.333-15 chr2 47278016 47278253 + 1 NA intron (NR_110207, intron 1 of 2) MLT2B4|LTR|ERVL -57181 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 165.5-24 chr2 49339577 49339840 + 1 NA Intergenic MIRb|SINE|MIR -185181 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 177.833-30 chr4 181439165 181439342 + 1 NA Intergenic AluJr|SINE|Alu -174224 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 229.333-31 chr5 112183267 112183577 + 1 NA intron (NM_001347887, intron 18 of 23) intron (NM_001347887, intron 18 of 23) 21937 NR_002922 654322 Hs.689709 NR_002922 ENSG00000238363 SNORA13 ACA13 small nucleolar RNA, H/ACA box 13 snoRNA 201.667-47 chr6 84422536 84422792 + 1 NA intron (NR_132100, intron 4 of 4) intron (NR_132100, intron 4 of 4) 52265 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 279.333-13 chr2 204072239 204072684 + 1 NA Intergenic Intergenic 135713 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 192.333-37 chr4 42475401 42475623 + 1 NA intron (NM_001105529, intron 24 of 35) intron (NM_001105529, intron 24 of 35) 78024 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 252.667-13 chr2 23787374 23787824 + 1 NA intron (NR_125717, intron 21 of 28) intron (NR_125717, intron 21 of 28) 139524 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 212.333-22 chr4 81684746 81685038 + 1 NA Intergenic Intergenic -212985 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 171.833-33 chr9 99000400 99000608 + 1 NA intron (NM_001855, intron 6 of 41) MIR|SINE|MIR 56597 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 332.333-6 chr12 23526746 23527320 + 1 NA Intergenic UCON2|DNA?|DNA? 57553 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 204.333-11 chr12 47064966 47065345 + 1 NA Intergenic Intergenic -14448 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 163.333-32 chr2 203428296 203428574 + 1 NA 3' UTR (NM_001282925, exon 11 of 11) 3' UTR (NM_001282925, exon 11 of 11) 61551 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 170.5-37 chr6 79233757 79234058 + 1 NA non-coding (NR_040671, exon 1 of 2) non-coding (NR_040671, exon 1 of 2) 233 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 197.333-9 chr14 64313914 64314261 + 1 NA intron (NM_001291712, intron 2 of 13) L1MDa|LINE|L1 -19677 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 239.5-33 chr6 117244362 117244692 + 1 NA Intergenic L1ME3D|LINE|L1 -21031 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 206.333-31 chr6 73855368 73855630 + 1 NA Intergenic Intergenic 159296 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 239.667-18 chr17 29930464 29930900 + 1 NA promoter-TSS (NM_001282129) promoter-TSS (NM_001282129) -454 NM_001282129 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 183.667-40 chr3 164289925 164290241 + 1 NA Intergenic Intergenic -118527 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 163.667-61 chrX 96127164 96127354 + 1 NA Intergenic MER53|DNA|hAT 210643 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 217.333-23 chr22 36089092 36089510 + 1 NA Intergenic Intergenic -60477 NM_001082578 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 290.333-7 chr11 96055755 96056213 + 1 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -131777 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 254.333-14 chr16 50208586 50209044 + 1 NA intron (NM_001365324, intron 1 of 11) AluSz6|SINE|Alu 55334 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 216.5-30 chr3 18751133 18751490 + 1 NA Intergenic Intergenic -305719 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 163.667-52 chr6 66188760 66189093 + 1 NA Intergenic Intergenic 401047 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 234.667-14 chr16 23432750 23433174 + 1 NA intron (NM_153603, intron 6 of 16) intron (NM_153603, intron 6 of 16) 20227 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 173.333-20 chr3 31532134 31532473 + 1 NA promoter-TSS (NM_178862) promoter-TSS (NM_178862) -622 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 277.333-22 chr2 107406394 107406925 + 1 NA Intergenic Mam_R4|LINE|Dong-R4 -57134 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 177.833-15 chr18 8464057 8464348 + 1 NA Intergenic Intergenic -97168 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 290.667 chr1 110003897 110004312 + 1 NA 5' UTR (NM_001242676, exon 1 of 17) 5' UTR (NM_001242676, exon 1 of 17) 156 NM_001242675 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 217.833-18 chr7 89912042 89912343 + 1 NA intron (NR_110029, intron 2 of 2) L1M6|LINE|L1 -207208 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 226.5-36 chr6 128815195 128815468 + 1 NA Intergenic L1M8|LINE|L1 -67807 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 246.333-19 chr16 1102959 1103240 + 1 NA Intergenic CpG -6855 NM_207419 390664 Hs.527853 NM_207419 ENSG00000184471 C1QTNF8 CTRP8|UNQ5829 C1q and TNF related 8 protein-coding 169.333-29 chr17 58877912 58878115 + 1 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 122144 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 166.5-28 chr3 13885675 13886018 + 1 NA Intergenic MIR|SINE|MIR -5775 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 175.167-45 chr9 102927745 102928245 + 1 NA Intergenic L1PA7|LINE|L1 -67338 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 214.333-12 chr12 85056572 85056883 + 1 NA exon (NM_001079910, exon 8 of 27) exon (NM_001079910, exon 8 of 27) 20376 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 191.333-42 chr7 114343271 114343492 + 1 NA intron (NR_033766, intron 2 of 19) intron (NR_033766, intron 2 of 19) -71434 NM_001172766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 195.667-38 chr5 127785272 127785577 + 1 NA intron (NM_001317938, intron 3 of 6) intron (NM_001317938, intron 3 of 6) 82035 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 550.333-3 chr8 61711996 61712818 + 1 NA intron (NM_001164755, intron 1 of 12) intron (NM_001164755, intron 1 of 12) 2185 NM_004318 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 214.667-46 chr9 126612061 126612275 + 1 NA Intergenic CpG -2275 NM_001174146 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 191.667-47 chr8 94553656 94554001 + 1 NA promoter-TSS (NM_183009) promoter-TSS (NM_183009) -310 NM_183009 25962 Hs.202238 NM_015496 ENSG00000164944 VIRMA KIAA1429|MSTP054|fSAP121 vir like m6A methyltransferase associated protein-coding 184.5-33 chr3 38217873 38218088 + 1 NA intron (NM_005109, intron 5 of 17) L1MB3|LINE|L1 -47832 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 265.167-5 chr14_GL000225v1_random 112393 112810 + 1 NA NA BSR/Beta|Satellite|Satellite NA NA 207.333-21 chr2 68452150 68452365 + 1 NA Intergenic MER20|DNA|hAT-Charlie 15037 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 305.833-12 chr3 84286958 84287266 + 1 NA Intergenic Cheshire|DNA|hAT-Charlie 582463 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 191.5-24 chr2 80115375 80115736 + 1 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 189197 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 210.667-14 chr14 38206316 38206636 + 1 NA Intergenic L1MB5|LINE|L1 -1428 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 414.667-9 chr6 159900028 159900687 + 1 NA intron (NM_002377, intron 2 of 2) intron (NM_002377, intron 2 of 2) 9369 NM_001366704 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 234.667-2 chr10 29169870 29170354 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR -118958 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 320.333-3 chr3 47118787 47119195 + 1 NA intron (NR_146158, intron 3 of 21) intron (NR_146158, intron 3 of 21) 44986 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 188.667-51 chr8 118108335 118108582 + 1 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 3361 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 210.667-7 chr11 9397598 9397826 + 1 NA intron (NM_006391, intron 1 of 24) MamRep137|DNA|TcMar-Tigger 13060 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 268.667-4 chr11 32310504 32310991 + 1 NA Intergenic Intergenic 89653 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 219.667-20 chr20 21409234 21409619 + 1 NA Intergenic AluJr4|SINE|Alu -11900 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 166.833-4 chr10 66070945 66071170 + 1 NA intron (NM_001127384, intron 14 of 17) intron (NM_001127384, intron 14 of 17) 499632 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 321.667-13 chr8 40604811 40605321 + 1 NA intron (NM_001135731, intron 4 of 5) L1PB1|LINE|L1 -261703 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 165.667-20 chr14 95896453 95896817 + 1 NA intron (NR_132398, intron 2 of 2) intron (NR_132398, intron 2 of 2) 19863 NR_132398 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 295.833-4 chr2 178450839 178451156 + 1 NA promoter-TSS (NM_001353777) promoter-TSS (NM_001353777) 178 NM_003690 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 238.333-40 chr7 46676237 46676673 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 20667 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 258.667-19 chr22 25819173 25819599 + 1 NA intron (NM_001318245, intron 12 of 43) intron (NM_001318245, intron 12 of 43) 77198 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 226.5-20 chr17 15262810 15263174 + 1 NA promoter-TSS (NM_001281455) promoter-TSS (NM_001281455) -403 NM_001281455 5376 Hs.372031 NM_000304 ENSG00000109099 PMP22 CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110 peripheral myelin protein 22 protein-coding 257.5-29 chr7 107371133 107371600 + 1 NA intron (NM_181733, intron 8 of 20) AluJr|SINE|Alu -98691 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 208.333-15 chr13 92440929 92441244 + 1 NA intron (NM_004466, intron 7 of 7) AluSz6|SINE|Alu -49077 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 235.167-6 chr10 31769234 31769784 + 1 NA Intergenic Charlie7|DNA|hAT-Charlie 139417 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 245.5 chr1 153192886 153193188 + 1 NA Intergenic Intergenic -10393 NM_001010857 149018 Hs.125785 NM_001010857 ENSG00000203784 LELP1 - late cornified envelope like proline rich 1 protein-coding 193.333-42 chr3 34960364 34960781 + 1 NA intron (NR_110817, intron 2 of 3) MIR|SINE|MIR 433451 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 184.5-52 chr8 112788682 112788963 + 1 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 145329 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 244.333-18 chr2 181466864 181467259 + 1 NA intron (NM_000885, intron 2 of 27) intron (NM_000885, intron 2 of 27) 9675 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 359.333-8 chr21 18403817 18404559 + 1 NA promoter-TSS (NM_002772) promoter-TSS (NM_002772) -403 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 194.667-47 chr5 76903670 76904041 + 1 NA intron (NM_130772, intron 4 of 4) AluSg7|SINE|Alu -49190 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 297.833-8 chr8 17183441 17183783 + 1 NA intron (NM_001362989, intron 1 of 12) L3|LINE|CR1 26448 NM_001362989 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 258.5-6 chr11 67639903 67640386 + 1 NA promoter-TSS (NM_005995) promoter-TSS (NM_005995) -584 NM_005995 347853 Hs.454480 NM_005995 ENSG00000167800 TBX10 TBX13|TBX7 T-box transcription factor 10 protein-coding 189.333-21 chr18 2528701 2528958 + 1 NA Intergenic Intergenic 42676 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 225.333-30 chr5 55323999 55324402 + 1 NA intron (NM_015360, intron 3 of 26) intron (NM_015360, intron 3 of 26) 16211 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 301.667 chr1 115082001 115082525 + 1 NA intron (NM_005725, intron 1 of 7) intron (NM_005725, intron 1 of 7) 7237 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 220.333-26 chr6 53797235 53797609 + 1 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 2417 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 214.667-31 chr5 5344579 5345010 + 1 NA Intergenic Intergenic -77883 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 292.333-9 chr2 26882983 26883385 + 1 NA intron (NM_001253724, intron 1 of 12) L1ME3B|LINE|L1 34760 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 184.667-15 chr13 51327536 51327815 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -13357 NM_001101320 647174 Hs.685891 NM_001101320 ENSG00000253309 SERPINE3 - serpin family E member 3 protein-coding 258.833-18 chr8 117546733 117547186 + 1 NA Intergenic Intergenic 26246 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 470.667-2 chr12 40035362 40036248 + 1 NA intron (NM_052885, intron 2 of 9) intron (NM_052885, intron 2 of 9) 70276 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 357.167 chr1 199664713 199665387 + 1 NA Intergenic Intergenic -362660 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 208.167 chr1 15815669 15816020 + 1 NA Intergenic Intergenic -8145 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 255.5-3 chr1 172638266 172638861 + 1 NA Intergenic L2c|LINE|L2 -20445 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 290.333-9 chr17 72016947 72017388 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 8812 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 179.667-5 chr11 112584214 112584424 + 1 NA Intergenic Intergenic -28517 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 236.333-34 chrX 69221786 69222584 + 1 NA Intergenic Intergenic 42628 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 227.333-24 chr3 139093395 139093825 + 1 NA Intergenic Intergenic -10575 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 446.333-3 chr8 64457794 64458476 + 1 NA Intergenic Intergenic 78986 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 163.333-16 chr13 44243480 44243662 + 1 NA Intergenic Intergenic -47371 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 314.667-11 chr4 47031575 47031911 + 1 NA intron (NM_000812, intron 1 of 8) intron (NM_000812, intron 1 of 8) 176 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 262.667-33 chr8 96261607 96261888 + 1 NA promoter-TSS (NM_001290225) promoter-TSS (NM_001290225) -134 NM_001286643 51001 Hs.308613 NM_015942 ENSG00000156469 MTERF3 CGI-12|MTERFD1 mitochondrial transcription termination factor 3 protein-coding 216.667-47 chr8 51876321 51876631 + 1 NA intron (NM_001363193, intron 1 of 5) L1MC4|LINE|L1 22560 NM_001363193 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 308.667-13 chr5 17470068 17470634 + 1 NA intron (NR_134270, intron 1 of 2) MIRb|SINE|MIR 26341 NR_134270 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 190.5-42 chr6 93397980 93398281 + 1 NA intron (NM_004440, intron 3 of 16) intron (NM_004440, intron 3 of 16) 21429 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 208.667-21 chr17 48219747 48220075 + 1 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -63400 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 309.333-15 chr4 94391036 94391469 + 1 NA Intergenic L2|LINE|L2 -48416 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 255.833-7 chr12 52336841 52337247 + 1 NA Intergenic L1M2|LINE|L1 -15646 NM_002282 3889 Hs.720768 NM_002282 ENSG00000170523 KRT83 EKVP5|HB3|Hb-3|KRTHB3|MNLIX keratin 83 protein-coding 292.167-10 chr2 88702398 88702880 + 1 NA intron (NM_144563, intron 3 of 8) THE1A|LTR|ERVL-MaLR 10966 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 245.333-26 chr7 16434636 16434949 + 1 NA Intergenic Intergenic -13254 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 181.667-34 chr3 124261786 124262018 + 1 NA intron (NM_001024660, intron 3 of 59) L1ME3G|LINE|L1 -112430 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 280.333-22 chr5 133370227 133370535 + 1 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 57325 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 224.5-12 chr15 70097706 70098044 + 1 NA promoter-TSS (NM_001105192) promoter-TSS (NM_001105192) 42 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 241.333-9 chr12 56333977 56334395 + 1 NA promoter-TSS (NM_001127460) promoter-TSS (NM_001127460) -186 NM_014871 9924 Hs.273397 NM_014871 ENSG00000135473 PAN2 USP52 poly(A) specific ribonuclease subunit PAN2 protein-coding 195.667-2 chr1 152163355 152163570 + 1 NA Intergenic Intergenic -4234 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 289.333-23 chr5 129990621 129990962 + 1 NA intron (NM_175856, intron 2 of 2) L2c|LINE|L2 86326 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 187.5-10 chr10 71623549 71623764 + 1 NA intron (NM_052836, intron 11 of 12) intron (NM_052836, intron 11 of 12) 96122 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 517.333-4 chr3 52934411 52935072 + 1 NA intron (NM_016329, intron 5 of 20) intron (NM_016329, intron 5 of 20) -37193 NM_001198974 100526772 NM_001198974 ENSG00000248592 STIMATE-MUSTN1 TMEM110-MUSTN1 STIMATE-MUSTN1 readthrough protein-coding 272.333-13 chr6 70278083 70278455 + 1 NA intron (NM_001851, intron 10 of 37) intron (NM_001851, intron 10 of 37) 4928 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 171.833-27 chr7 53089388 53089794 + 1 NA Intergenic Intergenic 53958 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 214.667-6 chr11 113114763 113115156 + 1 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -151499 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 170.5-42 chr7 87833519 87833756 + 1 NA TTS (NM_018843) TTS (NM_018843) 42723 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 262.5-30 chr8 73824403 73824727 + 1 NA intron (NR_073119, intron 2 of 5) MER1B|DNA|hAT-Charlie 54297 NR_073120 55284 Hs.128841 NM_018299 ENSG00000104343 UBE2W UBC-16|UBC16 ubiquitin conjugating enzyme E2 W protein-coding 192.333-3 chr1 104664786 104665097 + 1 NA Intergenic Intergenic 591918 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 239.5-5 chr11 82901378 82901627 + 1 NA promoter-TSS (NM_145018) promoter-TSS (NM_145018) -234 NM_001363481 220042 Hs.165607 NM_145018 ENSG00000165490 DDIAS C11orf82|noxin DNA damage induced apoptosis suppressor protein-coding 209.333-38 chr7 82442587 82442885 + 1 NA intron (NM_000722, intron 1 of 38) CpG 1041 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 271.5-32 chr4 102535578 102536039 + 1 NA intron (NM_003998, intron 4 of 23) intron (NM_003998, intron 4 of 23) -33322 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 177.5-28 chr2 7907282 7907563 + 1 NA Intergenic Intergenic -7767 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 164.667-11 chr11 8473614 8473869 + 1 NA intron (NM_001352388, intron 4 of 14) intron (NM_001352388, intron 4 of 14) 120235 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 192.833 chr1 35529628 35530112 + 1 NA intron (NM_024874, intron 2 of 20) L1M2|LINE|L1 27533 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 247.333-3 chr10 110973923 110974225 + 1 NA intron (NM_001269039, intron 2 of 7) L1MEc|LINE|L1 -14852 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 384.167-3 chr14 58200335 58200792 + 1 NA intron (NM_018477, intron 1 of 12) intron (NM_018477, intron 1 of 12) 414 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 228.333-5 chr10 65605176 65605529 + 1 NA intron (NR_120647, intron 2 of 5) L1MC4|LINE|L1 33927 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 204.333-51 chrX 38303727 38304120 + 1 NA intron (NR_159803, intron 8 of 20) intron (NR_159803, intron 8 of 20) 23029 NR_159808 6103 Hs.61438 NM_000328 ENSG00000156313 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 291.333-18 chr8 29125138 29125574 + 1 NA intron (NM_015254, intron 26 of 39) CR1-3_Croc|LINE|CR1 137714 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 215.833-20 chr6 104619234 104619708 + 1 NA Intergenic Intergenic 240075 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 221.333-22 chr5 38954824 38955174 + 1 NA intron (NM_001285439, intron 26 of 38) intron (NM_001285439, intron 26 of 38) 108987 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 277.333-5 chr1 242744170 242744864 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -219820 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 296.333-8 chr4 32398408 32398975 + 1 NA Intergenic Intergenic 47653 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 188.833-24 chr20 542832 543218 + 1 NA intron (NM_001362770, intron 1 of 14) intron (NM_001362770, intron 1 of 14) 765 NM_001362771 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 259.333-30 chr7 29032043 29032525 + 1 NA intron (NM_001371256, intron 15 of 16) intron (NM_001371256, intron 15 of 16) 52317 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 425.5 chr1 64663650 64664206 + 1 NA intron (NM_020925, intron 14 of 26) intron (NM_020925, intron 14 of 26) -81045 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 224.333-31 chr5 168039211 168039474 + 1 NA intron (NM_001080428, intron 3 of 24) intron (NM_001080428, intron 3 of 24) -126503 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 284.667-5 chr10 24552564 24552979 + 1 NA Intergenic Intergenic 70072 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 304.667-7 chr16 8918727 8919295 + 1 NA intron (NM_001286458, intron 7 of 31) intron (NM_001286458, intron 7 of 31) 17628 NM_001286458 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 295.333-17 chr3 79085494 79085817 + 1 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -66196 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 205.333-10 chr13 36858355 36858648 + 1 NA intron (NM_001127217, intron 5 of 6) intron (NM_001127217, intron 5 of 6) 39299 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 172.667-56 chrX 68307706 68307926 + 1 NA intron (NM_002547, intron 2 of 24) intron (NM_002547, intron 2 of 24) 125679 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 258.667-6 chr12 78644671 78644979 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -219157 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 234.5-27 chr3 51672019 51672300 + 1 NA intron (NR_103462, intron 1 of 3) intron (NR_103462, intron 1 of 3) 532 NR_103463 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264, ER-phagy receptor protein-coding 208.333-32 chr5 143507179 143507486 + 1 NA Intergenic Intergenic -71820 NM_001018077 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 324.5-2 chr14 65473537 65473930 + 1 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 2631 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 278.667-27 chr6 145730708 145731235 + 1 NA intron (NM_001360071, intron 1 of 4) intron (NM_001360071, intron 1 of 4) -3898 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 248.667-18 chr2 98688664 98688976 + 1 NA intron (NM_012214, intron 2 of 15) MLT1F2|LTR|ERVL-MaLR -25347 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 231.667-3 chr11 29382980 29383314 + 1 NA Intergenic Intergenic -211266 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 265.167-10 chr4 66372955 66373496 + 1 NA Intergenic Intergenic 96401 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 301.667-18 chr8 72948343 72948745 + 1 NA Intergenic Intergenic -60320 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 221.5-8 chr10 90132077 90132570 + 1 NA Intergenic L1MB4|LINE|L1 -174950 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 226.833-14 chr4 72258729 72259047 + 1 NA Intergenic Intergenic 219756 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 218.333-3 chr1 231790033 231790303 + 1 NA intron (NM_001164547, intron 6 of 7) intron (NM_001164547, intron 6 of 7) 28349 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 168.5-7 chr10 100047243 100047566 + 1 NA intron (NM_001308, intron 8 of 8) MER39B|LTR|ERV1 34465 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 209.167-10 chr12 85568657 85568955 + 1 NA Intergenic Intergenic 267603 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 276.167 chr1 56577063 56577408 + 1 NA intron (NM_003713, intron 1 of 5) intron (NM_003713, intron 1 of 5) 2328 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 212.667-34 chr3 111668720 111669076 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -5778 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 254.833-22 chr8 117272269 117272701 + 1 NA Intergenic Intergenic 137490 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 293.333-21 chr8 135297376 135297933 + 1 NA intron (NR_120396, intron 4 of 4) L1ME2|LINE|L1 63523 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 243.667-20 chr2 13194623 13195013 + 1 NA Intergenic MIRb|SINE|MIR -187805 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 227.667-39 chr6 132767356 132767869 + 1 NA Intergenic AluSc|SINE|Alu -4153 NM_078488 8875 Hs.293130 NM_004665 ENSG00000112303 VNN2 FOAP-4|GPI-80 vanin 2 protein-coding 198.667-46 chr9 33946993 33947427 + 1 NA intron (NR_163243, intron 9 of 24) intron (NR_163243, intron 9 of 24) 5644 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 173.667-14 chr12 121964551 121964997 + 1 NA intron (NM_001178003, intron 15 of 17) AluSx|SINE|Alu 46182 NM_001178003 144406 Hs.709837 NM_144668 ENSG00000158023 WDR66 CFAP251|CaM-IP4|SPGF33 WD repeat domain 66 protein-coding 168.333-20 chr14 43812687 43812889 + 1 NA Intergenic MER34C_|LTR|ERV1 694495 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 187.333-45 chr8 82029548 82029894 + 1 NA Intergenic Intergenic -187435 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 337.667-3 chr14 58373018 58373706 + 1 NA 3' UTR (NM_023000, exon 24 of 24) 3' UTR (NM_023000, exon 24 of 24) -22568 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 218.833-26 chr8 92812076 92812644 + 1 NA Intergenic Intergenic -26300 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 220.667-18 chr16 80548557 80548828 + 1 NA intron (NR_130943, intron 3 of 4) AluSq2|SINE|Alu 7699 NM_130897 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 174.833-25 chr8 28415168 28415469 + 1 NA Intergenic Charlie22a|DNA|hAT-Charlie -28858 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 208.667-22 chr19 28068401 28068728 + 1 NA Intergenic MER31-int|LTR|ERV1 -274624 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 189.5-4 chr11 6520882 6521170 + 1 NA TTS (NM_173589) TTS (NM_173589) 23730 NM_144666 144132 Hs.720080 NM_144666 ENSG00000179532 DNHD1 C11orf47|CCDC35|DHCD1|DNHD1L dynein heavy chain domain 1 protein-coding 262.667-36 chrX 137772041 137772378 + 1 NA Intergenic MIRb|SINE|MIR 206082 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 209.833-15 chr2 205926479 205926882 + 1 NA Intergenic Intergenic 159494 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 281.333-11 chr12 104861854 104862270 + 1 NA intron (NM_032148, intron 8 of 11) intron (NM_032148, intron 8 of 11) 96228 NM_001352172 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 194.667-58 chr9 132449508 132449747 + 1 NA intron (NM_001282957, intron 1 of 5) L1ME1|LINE|L1 39416 NM_207417 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 248.667-9 chr13 55328466 55328830 + 1 NA Intergenic L1MA4|LINE|L1 154194 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 247.333-13 chr2 200509112 200509702 + 1 NA intron (NM_001321547, intron 1 of 6) intron (NM_001321547, intron 1 of 6) 661 NM_001321548 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 181.667-47 chr9 34920840 34921104 + 1 NA Intergenic L1MA3|LINE|L1 -25208 NM_001309427 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 191.333-36 chr5 129435056 129435271 + 1 NA Intergenic AluJr|SINE|Alu -25135 NM_133638 171019 Hs.23751 NM_133638 ENSG00000145808 ADAMTS19 - ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding 249.667-35 chr9 36192124 36192516 + 1 NA intron (NM_001311204, intron 1 of 4) intron (NM_001311204, intron 1 of 4) 1399 NM_001184761 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 222.333-13 chr17 39570778 39571146 + 1 NA Intergenic Intergenic 36958 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 220.167-22 chr20 11585519 11585897 + 1 NA Intergenic Intergenic 285007 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 235.167-23 chr3 179098255 179098524 + 1 NA Intergenic Intergenic -26580 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 248.5-31 chr5 72831476 72831880 + 1 NA intron (NM_001364292, intron 1 of 24) intron (NM_001364292, intron 1 of 24) 15017 NM_001364295 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 189.667-25 chr2 42654529 42654746 + 1 NA intron (NM_001330443, intron 6 of 16) intron (NM_001330443, intron 6 of 16) 86005 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 215.333-47 chr8 103775938 103776250 + 1 NA intron (NM_001348497, intron 3 of 22) BLACKJACK|DNA|hAT-Blackjack -43126 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 291.5-18 chr19 10285252 10285882 + 1 NA 3' UTR (NM_000201, exon 7 of 7) 3' UTR (NM_000201, exon 7 of 7) -1388 NM_001039132 3386 Hs.706750 NM_001544 ENSG00000105371 ICAM4 CD242|LW intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) protein-coding 171.667-10 chr11 74948516 74948706 + 1 NA promoter-TSS (NM_014752) promoter-TSS (NM_014752) 480 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 300.167-11 chr5 26752039 26752430 + 1 NA Intergenic MLT2B4|LTR|ERVL 286352 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 356.167-6 chr18 68245343 68245707 + 1 NA Intergenic L1M5|LINE|L1 -430703 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 213.167-16 chr21 23426328 23426751 + 1 NA Intergenic Intergenic -41704 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 230.333-32 chr8 84749015 84749532 + 1 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 43346 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 419.5-4 chr17 60142194 60143008 + 1 NA Intergenic Intergenic -7372 NM_000717 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 426.5-3 chr16 6084439 6084883 + 1 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 64958 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 246.667-15 chr20 31609090 31609382 + 1 NA Intergenic MIRb|SINE|MIR 2050 NR_036161 100422904 NR_036161 ENSG00000264395 MIR3193 - microRNA 3193 ncRNA 186.333-7 chr11 104817646 104818000 + 1 NA Intergenic HERVL40-int|LTR|ERVL 80847 NM_001191016 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 176.667-11 chr12 39614084 39614410 + 1 NA intron (NM_005164, intron 2 of 9) intron (NM_005164, intron 2 of 9) 5556 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 374.333-3 chr7 74203028 74203793 + 1 NA Intergenic ERVL47-int|LTR|ERVL -6596 NM_032464 7462 Hs.741249 NM_014146 ENSG00000086730 LAT2 HSPC046|LAB|NTAL|WBSCR15|WBSCR5|WSCR5 linker for activation of T cells family member 2 protein-coding 206.5-15 chr14 75816641 75816968 + 1 NA intron (NM_015072, intron 27 of 31) intron (NM_015072, intron 27 of 31) 155558 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 324.167-21 chr8 127986233 127986760 + 1 NA intron (NR_003367, intron 4 of 8) intron (NR_003367, intron 4 of 8) -22402 NR_031611 100302170 NR_031611 ENSG00000283200 MIR1206 MIRN1206|hsa-mir-1206 microRNA 1206 ncRNA 213.5 chr1 69719982 69720217 + 1 NA intron (NM_001366839, intron 3 of 25) L1MEg|LINE|L1 150758 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 215.667-26 chr20 56344032 56344460 + 1 NA Intergenic CpG -14728 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 195.5-37 chr8 84888612 84888886 + 1 NA intron (NM_001287244, intron 7 of 7) AluSx1|SINE|Alu 182822 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 176.333-15 chr2 72318958 72319280 + 1 NA intron (NR_135773, intron 19 of 21) (ATATAAT)n|Simple_repeat|Simple_repeat -171257 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 259.333-8 chr11 50477142 50477554 + 1 NA Intergenic ALR/Alpha|Satellite|centr 68201 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 218.667-28 chr4 84863201 84863501 + 1 NA intron (NM_014991, intron 3 of 67) L1MA9|LINE|L1 -102265 NR_152773 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 172.5-4 chr10 31346211 31346507 + 1 NA intron (NM_001323675, intron 1 of 6) intron (NM_001323675, intron 1 of 6) 24699 NM_001323672 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 215.667-31 chr3 137264265 137264613 + 1 NA Intergenic Intergenic 306456 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 209.5-18 chr15 98898918 98899257 + 1 NA intron (NM_000875, intron 4 of 20) intron (NM_000875, intron 4 of 20) 106569 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 255.5-39 chr8 144879890 144880221 + 1 NA 3' UTR (NM_001363101, exon 6 of 6) 3' UTR (NM_001363101, exon 6 of 6) 20250 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 203.5-21 chr2 157792953 157793189 + 1 NA intron (NM_001111067, intron 3 of 10) intron (NM_001111067, intron 3 of 10) 45559 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 201.167-14 chr18 41731138 41731549 + 1 NA Intergenic Intergenic -210666 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 285.667 chr1 117974183 117974480 + 1 NA intron (NM_206996, intron 43 of 48) MIRc|SINE|MIR 44592 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 259.5-13 chr2 44340875 44341314 + 1 NA intron (NM_006036, intron 5 of 13) intron (NM_006036, intron 5 of 13) 18655 NM_001042385 9581 Hs.444349 NM_006036 ENSG00000138078 PREPL CMS22 prolyl endopeptidase like protein-coding 194.167-9 chr11 112767753 112768009 + 1 NA Intergenic Intergenic -193539 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 293.833-9 chr3 142852749 142853249 + 1 NA intron (NM_013363, intron 2 of 8) AluJr|SINE|Alu 36084 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 203.333-32 chr2 185407819 185408241 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -240958 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 197.167-5 chr11 12041940 12042351 + 1 NA intron (NR_135109, intron 1 of 1) THE1B|LTR|ERVL-MaLR 11270 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 195.5-13 chr18 74650939 74651328 + 1 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 20170 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 172.667-54 chr8 101501573 101501775 + 1 NA intron (NM_001330593, intron 1 of 15) L3b|LINE|CR1 9235 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 181.5-43 chr6 74910629 74910888 + 1 NA Intergenic Intergenic 218024 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 278.5-18 chr3 167378963 167379320 + 1 NA intron (NM_001199202, intron 1 of 20) intron (NM_001199202, intron 1 of 20) 1142 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 188.333-4 chr1 164705799 164706149 + 1 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 68667 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 167.667-51 chrX 51988770 51988977 + 1 NA Intergenic L1M6|LINE|L1 74600 NR_003711 100124541 Hs.709779 NR_003711 ENSG00000221475 SNORA11D - small nucleolar RNA, H/ACA box 11D snoRNA 329.667-3 chr17 55367473 55367877 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 54160 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 220.333-21 chr21 20754796 20755038 + 1 NA intron (NR_109787, intron 6 of 6) MLT1F2|LTR|ERVL-MaLR 48191 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 175.333-49 chr6 158660022 158660393 + 1 NA intron (NM_001242394, intron 2 of 17) AluSx1|SINE|Alu -3196 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 188.5-52 chr8 85608357 85608627 + 1 NA Intergenic MIRb|SINE|MIR 47184 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 196.667-8 chr11 108958974 108959392 + 1 NA Intergenic Intergenic 294114 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 300.333-10 chr5 129607495 129607943 + 1 NA intron (NM_133638, intron 8 of 22) intron (NM_133638, intron 8 of 22) -140375 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 213.167-11 chr19 47698252 47698809 + 1 NA intron (NM_015711, intron 11 of 14) intron (NM_015711, intron 11 of 14) -14892 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 273.5-17 chr4 13834094 13834610 + 1 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) 179173 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 300.167-8 chr2 109591256 109591603 + 1 NA intron (NM_001321500, intron 1 of 8) L2|LINE|L2 22238 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 209.833-5 chr10 4866107 4866390 + 1 NA Intergenic Intergenic 40041 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 231.333-7 chr1 205615993 205616384 + 1 NA 3' UTR (NM_001973, exon 5 of 5) 3' UTR (NM_001973, exon 5 of 5) 16684 NM_001973 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 164.5-49 chr7 33632152 33632430 + 1 NA intron (NM_001348041, intron 22 of 22) intron (NM_001348041, intron 22 of 22) -272624 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 318.333-4 chr13 42819599 42820031 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -7253 NR_125747 103689845 Hs.422131 NR_125747 ENSG00000271216 LINC01050 - long intergenic non-protein coding RNA 1050 ncRNA 270.5-30 chr5 28476468 28477158 + 1 NA Intergenic Intergenic -189148 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 178.667-37 chr5 144129644 144129930 + 1 NA Intergenic Intergenic 40872 NM_001024947 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 276.5-12 chr22 30930552 30930961 + 1 NA intron (NM_001303257, intron 24 of 25) intron (NM_001303257, intron 24 of 25) 8448 NR_026920 150291 Hs.592202 NM_153044 ENSG00000235989 MORC2-AS1 C22orf27|NCRNA00325 MORC2 antisense RNA 1 ncRNA 165.5-27 chr2 115539459 115539661 + 1 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 195745 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 264.667-19 chr8 116908203 116908510 + 1 NA Intergenic Intergenic -29851 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 208.333-7 chr10 15577475 15577774 + 1 NA intron (NM_001291494, intron 22 of 28) intron (NM_001291494, intron 22 of 28) 142298 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 337.5-8 chr8 120813288 120813766 + 1 NA Intergenic Intergenic -1481 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 194.333-24 chr2 127050140 127050721 + 1 NA exon (NM_139351, exon 12 of 13) exon (NM_139351, exon 12 of 13) 31635 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 285.333-14 chrX 7927473 7927765 + 1 NA promoter-TSS (NM_004650) promoter-TSS (NM_004650) 120 NM_001172672 8228 Hs.264 NM_004650 ENSG00000006757 PNPLA4 DXS1283E|GS2|iPLA2eta patatin like phospholipase domain containing 4 protein-coding 246.333-12 chr12 14076457 14076944 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -96344 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 216.667-20 chr17 71453541 71453816 + 1 NA Intergenic Intergenic -251499 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 277.5-9 chr2 61099753 61100306 + 1 NA intron (NM_001129993, intron 12 of 21) L2b|LINE|L2 33820 NM_032506 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 250.667-29 chr3 128723833 128724406 + 1 NA Intergenic Intergenic -2017 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 246.667-28 chrX 42669036 42669312 + 1 NA Intergenic Intergenic 108989 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 237.333-5 chr11 30323082 30323505 + 1 NA intron (NM_152316, intron 1 of 3) CpG 189 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 182.667-36 chr3 190929337 190929624 + 1 NA Intergenic MIR|SINE|MIR 51550 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 305.667-5 chr15 26335805 26336390 + 1 NA Intergenic AluJb|SINE|Alu 220284 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 187.5-20 chr16 53652384 53652657 + 1 NA intron (NM_001127897, intron 15 of 24) intron (NM_001127897, intron 15 of 24) 51339 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 287.333-18 chr7 93154586 93154945 + 1 NA Intergenic Intergenic -6380 NM_001303497 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 200.5-34 chr3 179814206 179814578 + 1 NA intron (NR_146167, intron 9 of 13) MIR|SINE|MIR -83802 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 217.833-5 chr1 211985309 211985706 + 1 NA intron (NM_015434, intron 8 of 19) intron (NM_015434, intron 8 of 19) -50046 NM_001286229 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 197.5-31 chr5 167181717 167182071 + 1 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -13493 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 206.667-17 chr16 8357023 8357249 + 1 NA Intergenic L1PA15|LINE|L1 232702 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 221.667-38 chr5 44449967 44450393 + 1 NA Intergenic LTR49-int|LTR|ERV1 60102 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 338.167-2 chr1 85911940 85912636 + 1 NA intron (NM_152890, intron 24 of 59) intron (NM_152890, intron 24 of 59) -203855 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 301.667-7 chr14 35121462 35121996 + 1 NA promoter-TSS (NM_001256681) promoter-TSS (NM_001256681) 813 NM_001305155 55012 Hs.530712 NM_017917 ENSG00000092020 PPP2R3C C14orf10|G4-1|G5pr|GDRM|SPGF36 protein phosphatase 2 regulatory subunit B''gamma protein-coding 223.5-26 chr7 53849365 53849800 + 1 NA Intergenic Intergenic -37651 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 170.5-8 chr10 116844043 116844431 + 1 NA intron (NM_001330164, intron 1 of 12) intron (NM_001330164, intron 1 of 12) -5262 NM_001242699 387712 Hs.693248 NM_001242699 ENSG00000188316 ENO4 C10orf134 enolase 4 protein-coding 272.667-2 chr1 39178522 39179005 + 1 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 94596 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 165.333-8 chr10 69125107 69125317 + 1 NA intron (NM_001035260, intron 1 of 7) intron (NM_001035260, intron 1 of 7) 1034 NM_001318945 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 193.667-17 chr13 89076022 89076361 + 1 NA Intergenic MER67D|LTR|ERV1 -159100 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 436.5-4 chr17 81733332 81733951 + 1 NA Intergenic Intergenic 21357 NM_001270888 1468 Hs.548187 NM_012140 ENSG00000183048 SLC25A10 DIC solute carrier family 25 member 10 protein-coding 222.833-14 chr2 13412410 13412653 + 1 NA Intergenic L2a|LINE|L2 -405518 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 205.667-22 chr2 237060981 237061201 + 1 NA Intergenic Intergenic -4924 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 364.333-5 chr21 29056587 29057096 + 1 NA intron (NM_001282907, intron 15 of 15) intron (NM_001282907, intron 15 of 15) 16807 NM_006585 10694 Hs.125113 NM_006585 ENSG00000156261 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1 subunit 8 protein-coding 359.333-2 chr12 46922004 46922453 + 1 NA Intergenic Intergenic -96231 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 211.333-10 chr11 77636170 77636620 + 1 NA intron (NM_001293, intron 1 of 6) intron (NM_001293, intron 1 of 6) 1399 NM_001311202 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 165.333-46 chr8 38074647 38074894 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -30723 NM_001282272 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like, histone lysine methyltransferase complex subunit protein-coding 297.333-3 chr1 216680710 216681140 + 1 NA intron (NM_001134285, intron 3 of 8) intron (NM_001134285, intron 3 of 8) 42504 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 220.667-32 chr5 126334488 126334885 + 1 NA Intergenic Intergenic -25434 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 232.5 chr1 98900087 98900437 + 1 NA intron (NM_001010861, intron 5 of 5) L2|LINE|L2 -104014 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 422.833-2 chr15 56782055 56782939 + 1 NA Intergenic Intergenic -48411 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 196.833-18 chr4 16606911 16607216 + 1 NA intron (NM_001304435, intron 2 of 7) intron (NM_001304435, intron 2 of 7) 291582 NM_001130834 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 228.333-19 chr3 127722034 127722542 + 1 NA intron (NM_001003794, intron 4 of 7) intron (NM_001003794, intron 4 of 7) 49336 NM_172027 80325 Hs.107812 NM_032548 ENSG00000114626 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP|PP2259 ankyrin repeat and BTB domain containing 1 protein-coding 206.333-38 chr9 108439731 108439988 + 1 NA Intergenic Intergenic 416127 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 258.833-8 chr17 76402877 76403270 + 1 NA intron (NM_022066, intron 3 of 17) intron (NM_022066, intron 3 of 17) 17795 NM_001142602 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 168.333-53 chr4 157410687 157410983 + 1 NA Intergenic Intergenic -161655 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 352.333-14 chr9 132236313 132236786 + 1 NA intron (NM_032536, intron 5 of 7) intron (NM_032536, intron 5 of 7) 74491 NM_032536 84628 Hs.163642 NM_032536 ENSG00000196358 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 462.333 chr14 20359976 20360814 + 1 NA Intergenic L1MB7|LINE|L1 16781 NM_005484 10038 Hs.409412 NM_005484 ENSG00000129484 PARP2 ADPRT2|ADPRTL2|ADPRTL3|ARTD2|PARP-2|pADPRT-2 poly(ADP-ribose) polymerase 2 protein-coding 199.667-45 chr7 145846208 145846430 + 1 NA Intergenic L1MEc|LINE|L1 -927952 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 191.667-48 chr9 87773356 87773590 + 1 NA non-coding (NR_027917, exon 3 of 5) non-coding (NR_027917, exon 3 of 5) 558 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 189.333-24 chr3 46308788 46309125 + 1 NA Intergenic L1MDa|LINE|L1 -44788 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 231.5-29 chr4 62201347 62201663 + 1 NA Intergenic Intergenic -39740 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 186.167-19 chr5 13286415 13286804 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -253723 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 185.5-12 chr12 9941949 9942390 + 1 NA intron (NR_104634, intron 2 of 4) L2c|LINE|L2 1326 NR_104634 100506159 Hs.282397 NR_104634 ENSG00000225231 LINC02470 - long intergenic non-protein coding RNA 2470 ncRNA 165.333-12 chr11 76879337 76879715 + 1 NA intron (NM_001300953, intron 1 of 9) L1ME2z|LINE|L1 18608 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 167.167-8 chr10 58434375 58434697 + 1 NA Intergenic AluJr4|SINE|Alu 49126 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 176.333-28 chr5 51508386 51508599 + 1 NA Intergenic Intergenic 125044 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 346.167-4 chr12 126623074 126623446 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 67058 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 231.5-4 chr11 37745062 37745452 + 1 NA Intergenic Intergenic -193344 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 188.667-18 chr17 80177024 80177351 + 1 NA intron (NM_001366385, intron 2 of 23) MLT1C|LTR|ERVL-MaLR -1321 NM_024110 79092 Hs.675480 NM_024110 ENSG00000141527 CARD14 BIMP2|CARMA2|PRP|PSORS2|PSS1 caspase recruitment domain family member 14 protein-coding 170.667-34 chr4 104016009 104016382 + 1 NA Intergenic Intergenic -296210 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 181.667-32 chr3 30496640 30496886 + 1 NA Intergenic Intergenic -22105 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 262.333-6 chr11 67266120 67266400 + 1 NA promoter-TSS (NM_001619) promoter-TSS (NM_001619) -213 NM_001619 156 Hs.83636 NM_001619 ENSG00000173020 GRK2 ADRBK1|BARK1|BETA-ARK1 G protein-coupled receptor kinase 2 protein-coding 209.167-26 chr5 84315115 84315541 + 1 NA intron (NM_001278642, intron 1 of 9) MIR3|SINE|MIR 69539 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 294.333-17 chr7 11614812 11615293 + 1 NA intron (NM_015204, intron 2 of 26) LTR67B|LTR|ERVL 217146 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 208.333 chr1 80224935 80225159 + 1 NA Intergenic Intergenic -310708 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 196.5-6 chr11 29329170 29329385 + 1 NA Intergenic Intergenic -265136 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 284.5-8 chr14 60579316 60579785 + 1 NA Intergenic Intergenic -59666 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 183.333-17 chr12 23816984 23817277 + 1 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 132540 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 210.667-21 chr17 40165316 40165703 + 1 NA intron (NM_007359, intron 7 of 13) intron (NM_007359, intron 7 of 13) 3576 NR_106926 102466986 NR_106926 ENSG00000284144 MIR6866 hsa-mir-6866 microRNA 6866 ncRNA 260.5-12 chr18 5554946 5555364 + 1 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) -10816 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 188.167-3 chr1 44158800 44159012 + 1 NA Intergenic L1M4c|LINE|L1 -17275 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 176.833-7 chr11 92599966 92600150 + 1 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 247962 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 181.5-45 chr6 129136124 129136407 + 1 NA intron (NM_000426, intron 4 of 64) intron (NM_000426, intron 4 of 64) 253124 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 167.167-19 chr2 29642535 29642761 + 1 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -167271 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 215.333-18 chr12 87866629 87866865 + 1 NA Intergenic Intergenic -82036 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 224.667 chr1 5746035 5746262 + 1 NA Intergenic Intergenic 116593 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 271.667-12 chr15 81256717 81257136 + 1 NA intron (NM_001352686, intron 2 of 18) intron (NM_001352686, intron 2 of 18) -40044 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 234.5-30 chr3 165126354 165126707 + 1 NA Intergenic Intergenic -48034 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 204.5-31 chr6 3126266 3126486 + 1 NA intron (NM_004332, intron 2 of 6) intron (NM_004332, intron 2 of 6) 7665 NM_004332 670 Hs.10136 NM_004332 ENSG00000137274 BPHL BPH-RP|MCNAA|VACVASE biphenyl hydrolase like protein-coding 258.167-10 chr15 26708285 26708585 + 1 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) 8330 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 302.333-5 chr17 71284695 71285160 + 1 NA Intergenic Intergenic -82748 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 351.5-11 chr6 80337399 80338071 + 1 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 231064 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 202.5-33 chr21 23452040 23452393 + 1 NA Intergenic MER101-int|LTR|ERV1 -67381 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 182.333-9 chr15 69604633 69604841 + 1 NA intron (NR_126438, intron 1 of 3) L2a|LINE|L2 12537 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 180.5-8 chr10 98460693 98461001 + 1 NA intron (NM_021828, intron 11 of 11) intron (NM_021828, intron 11 of 11) -13884 NM_001311345 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 174.667-17 chr15 89861739 89862053 + 1 NA intron (NR_023361, intron 5 of 6) intron (NR_023361, intron 5 of 6) -11175 NR_049817 100847059 NR_049817 ENSG00000264966 MIR5094 - microRNA 5094 ncRNA 209.667-17 chr19 41958371 41958593 + 1 NA intron (NM_006423, intron 2 of 4) intron (NM_006423, intron 2 of 4) 839 NM_006423 10567 Hs.11417 NM_006423 ENSG00000105404 RABAC1 PRA1|PRAF1|YIP3 Rab acceptor 1 protein-coding 249.667-5 chr10 75412016 75412337 + 1 NA TTS (NR_110304) TTS (NR_110304) 3019 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 223.667-11 chr11 103058099 103058463 + 1 NA 3' UTR (NM_032299, exon 8 of 8) 3' UTR (NM_032299, exon 8 of 8) 33879 NM_001318740 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 164.5-38 chr3 104686461 104686709 + 1 NA Intergenic L1ME2|LINE|L1 -680128 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 218.167-26 chr8 126928903 126929324 + 1 NA Intergenic Intergenic -84041 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 210.167-27 chr5 54576390 54576795 + 1 NA Intergenic Intergenic 58833 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 219.833-28 chr8 91345277 91345785 + 1 NA intron (NM_134266, intron 9 of 18) (ATTATT)n|Simple_repeat|Simple_repeat 96212 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 330.667 chr1 106591255 106591748 + 1 NA Intergenic MLT2A1|LTR|ERVL -226738 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 244.167-23 chr5 162608030 162608346 + 1 NA Intergenic Intergenic 540546 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 311.833-5 chr7 21072922 21073463 + 1 NA Intergenic Intergenic 237761 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 163.333-26 chr18 4490067 4490356 + 1 NA Intergenic MLT1F|LTR|ERVL-MaLR -34904 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 185.833-17 chr20 21591782 21592288 + 1 NA intron (NR_109880, intron 1 of 3) AluJb|SINE|Alu 22011 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 163.667-20 chr17 7002578 7002878 + 1 NA intron (NM_000697, intron 8 of 13) intron (NM_000697, intron 8 of 13) 6679 NM_000697 239 Hs.654431 NM_000697 ENSG00000108839 ALOX12 12-LOX|12S-LOX|LOG12 arachidonate 12-lipoxygenase, 12S type protein-coding 180.667-36 chr5 78181578 78181981 + 1 NA intron (NM_003664, intron 7 of 26) intron (NM_003664, intron 7 of 26) 112919 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 533.667-2 chr5 173144391 173145324 + 1 NA intron (NM_013980, intron 1 of 5) intron (NM_013980, intron 1 of 5) 326 NM_013979 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 304.5-2 chr1 82696274 82696695 + 1 NA Intergenic Charlie1b|DNA|hAT-Charlie -206699 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 190.667-59 chr9 72977193 72977551 + 1 NA Intergenic Intergenic -24319 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 307.333-17 chr8 68765976 68766536 + 1 NA intron (NM_001349479, intron 9 of 11) intron (NM_001349479, intron 9 of 11) 337934 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 184.667-45 chr7 7676497 7676944 + 1 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) 35968 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 200.333-40 chr7 82715639 82715923 + 1 NA Intergenic MER66-int|LTR|ERV1 -271825 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 208.667-46 chr8 22934396 22934762 + 1 NA intron (NM_001363233, intron 1 of 6) FLAM_A|SINE|Alu 6498 NM_001363233 157310 Hs.491242 NM_144962 ENSG00000134020 PEBP4 CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4 phosphatidylethanolamine binding protein 4 protein-coding 236.333-15 chr2 63588353 63588651 + 1 NA promoter-TSS (NM_015910) promoter-TSS (NM_015910) -25 NM_001354045 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 252.333 chr1 4442943 4443292 + 1 NA Intergenic Intergenic 31066 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 294.667-13 chr18 65578847 65579198 + 1 NA Intergenic AluJb|SINE|Alu -171230 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 204.333-13 chr13 36798200 36798425 + 1 NA Intergenic 5S|rRNA|rRNA -20890 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 244.333-7 chr11 111345386 111345734 + 1 NA Intergenic Intergenic -2197 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 212.5-35 chr8 138069465 138069787 + 1 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 13919 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 340.667-5 chr12 8679115 8679510 + 1 NA Intergenic AluSx1|SINE|Alu -2288 NR_147945 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 284.333-3 chr10 43761795 43762169 + 1 NA Intergenic L1M8|LINE|L1 16843 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 238.333-35 chr5 180602883 180603414 + 1 NA 3' UTR (NM_182925, exon 30 of 30) 3' UTR (NM_182925, exon 30 of 30) -11649 NM_052863 92304 Hs.62492 NM_052863 ENSG00000161055 SCGB3A1 HIN-1|HIN1|LU105|PnSP-2|UGRP2 secretoglobin family 3A member 1 protein-coding 236.5-36 chrX 51857827 51858164 + 1 NA intron (NM_001005332, intron 1 of 12) intron (NM_001005332, intron 1 of 12) -35628 NM_006986 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 231.333-28 chr4 161113564 161114055 + 1 NA Intergenic L1PA7|LINE|L1 -908924 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 189.333-35 chr6 125989693 125990045 + 1 NA intron (NM_001350583, intron 1 of 12) intron (NM_001350583, intron 1 of 12) 3329 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 319.5 chr1 238063842 238064376 + 1 NA Intergenic Intergenic -173187 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 212.333-30 chr7 42517071 42517398 + 1 NA Intergenic Intergenic 189213 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 185.333-12 chr12 6979400 6979692 + 1 NA exon (NM_005768, exon 7 of 13) exon (NM_005768, exon 7 of 13) 8633 NR_135131 10436 Hs.558447 NM_006331 ENSG00000126749 EMG1 C2F|Grcc2f|NEP1 EMG1 N1-specific pseudouridine methyltransferase protein-coding 189.333-19 chr16 31926406 31926685 + 1 NA Intergenic MLT2D|LTR|ERVL 52738 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 403.167-6 chr6 97186043 97186621 + 1 NA intron (NM_001350600, intron 14 of 23) intron (NM_001350600, intron 14 of 23) 96884 NM_198468 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 193.333-38 chr20 37325665 37326055 + 1 NA Intergenic L1ME2z|LINE|L1 -18825 NM_005417 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 270.333-10 chr2 95069799 95070114 + 1 NA Intergenic Intergenic 44248 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 400.833 chr14 86654519 86655088 + 1 NA Intergenic Intergenic -250975 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 201.333-32 chr22 34760497 34760891 + 1 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 237222 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 217.167-12 chr16 83219547 83219775 + 1 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -229363 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 330.667-13 chr6 151478461 151478996 + 1 NA Intergenic Intergenic -15289 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 313.5 chr1 12229446 12229907 + 1 NA promoter-TSS (NM_018156) promoter-TSS (NM_018156) -354 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 207.333-26 chr20 55877478 55877721 + 1 NA Intergenic Intergenic 127920 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 362.667-7 chr5 126681605 126682104 + 1 NA Intergenic MIR3|SINE|MIR 50149 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 188.333-7 chr10 73020259 73020631 + 1 NA intron (NM_001017962, intron 10 of 14) L1P4|LINE|L1 -65639 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 202.5-18 chr13 20419856 20420454 + 1 NA intron (NM_001363647, intron 4 of 6) intron (NM_001363647, intron 4 of 6) 13691 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 243.167-5 chr14 69142901 69143398 + 1 NA intron (NM_003861, intron 1 of 8) intron (NM_003861, intron 1 of 8) 9450 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 350.167-5 chr13 44630728 44631211 + 1 NA Intergenic MSTD-int|LTR|ERVL-MaLR -9400 NR_149082 106144541 Hs.578031 NR_149082 LINC00407 - long intergenic non-protein coding RNA 407 ncRNA 274.5-6 chr12 118138048 118138452 + 1 NA intron (NM_002567, intron 2 of 3) intron (NM_002567, intron 2 of 3) 2126 NM_002567 5037 Hs.433863 NM_002567 ENSG00000089220 PEBP1 HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP phosphatidylethanolamine binding protein 1 protein-coding 181.833-24 chr5 77239751 77239986 + 1 NA intron (NM_001029853, intron 1 of 20) intron (NM_001029853, intron 1 of 20) 29188 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 250.333-13 chr2 219278992 219279365 + 1 NA promoter-TSS (NM_006736) promoter-TSS (NM_006736) -188 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 194.667-16 chr12 69157260 69157585 + 1 NA Intergenic Intergenic -82147 NM_001300947 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 249.833-18 chr7 103776716 103777005 + 1 NA intron (NM_005045, intron 3 of 64) intron (NM_005045, intron 3 of 64) 212656 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 296.167-11 chr21 27697843 27698366 + 1 NA Intergenic L2a|LINE|L2 -24275 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 301.5-7 chr12 60598284 60599028 + 1 NA Intergenic Intergenic 909286 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 339.667-4 chr10 122297401 122297913 + 1 NA intron (NM_001318189, intron 7 of 15) intron (NM_001318189, intron 7 of 15) 26361 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 234.667-21 chr3 124406203 124406574 + 1 NA intron (NM_001024660, intron 13 of 59) intron (NM_001024660, intron 13 of 59) 32056 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 201.667-28 chr20 44848465 44848758 + 1 NA Intergenic AluJb|SINE|Alu -37094 NM_139323 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 338.833-2 chr10 35190064 35190596 + 1 NA intron (NM_182771, intron 4 of 5) L1M5|LINE|L1 -4797 NM_001267569 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 200.333-28 chr4 99886904 99887106 + 1 NA intron (NM_021970, intron 4 of 6) intron (NM_021970, intron 4 of 6) 7422 NM_021970 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 183.667-43 chr4 120484733 120484968 + 1 NA Intergenic Intergenic -418002 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 206.333-40 chrX 113656139 113656526 + 1 NA intron (NR_131204, intron 1 of 2) L1MC3|LINE|L1 281886 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 240.667-13 chr15 57814823 57815141 + 1 NA Intergenic L1PA7|LINE|L1 108268 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 250.333-10 chr15 34110051 34110431 + 1 NA Intergenic Intergenic 8158 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 171.333-33 chr22 23182760 23183162 + 1 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) 2452 NM_021574 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 297.167 chr1 62231041 62231406 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR 36374 NM_019079 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 197.5-3 chr1 203934380 203934683 + 1 NA Intergenic Intergenic 72684 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 199.333-39 chr5 40458084 40458426 + 1 NA Intergenic MSTD|LTR|ERVL-MaLR -221660 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 166.667-14 chr12 69897697 69898056 + 1 NA intron (NM_182530, intron 10 of 24) intron (NM_182530, intron 10 of 24) 72649 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 263.667-4 chr10 99314651 99315075 + 1 NA Intergenic Charlie2b|DNA|hAT-Charlie -14236 NM_001345887 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 216.5-12 chr11 120810850 120811267 + 1 NA TTS (NR_133008) TTS (NR_133008) 8057 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 335.333-8 chr6 35259695 35260156 + 1 NA intron (NM_001292032, intron 1 of 12) CpG 190 NM_001292032 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 282.167-9 chr22 32558731 32559088 + 1 NA intron (NM_003490, intron 7 of 13) intron (NM_003490, intron 7 of 13) 83672 NM_001257990 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 167.667-15 chr17 82069070 82069440 + 1 NA Intergenic AluSx|SINE|Alu -3451 NM_022156 64118 Hs.514599 NM_022156 ENSG00000169718 DUS1L DUS1|PP3111 dihydrouridine synthase 1 like protein-coding 326.5-3 chr14 30330205 30330786 + 1 NA Intergenic Intergenic -228628 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 242.333-22 chr5 152000166 152000474 + 1 NA intron (NR_109876, intron 1 of 2) MER20|DNA|hAT-Charlie 41422 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 474.5 chr1 162627334 162628150 + 1 NA Intergenic Intergenic -3121 NM_001354983 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 211.333-54 chr9 94951089 94951439 + 1 NA intron (NM_001193329, intron 6 of 15) MIRb|SINE|MIR -5710 NR_147613 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 207.667-42 chr7 16084552 16084934 + 1 NA Intergenic Intergenic -125743 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 187.333-13 chr11 39175961 39176149 + 1 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat 527197 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 212.667-41 chr5 110899583 110899986 + 1 NA Intergenic MER58A|DNA|hAT-Charlie 160777 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 206.667-31 chr2 235521961 235522312 + 1 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -4215 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 336.5-12 chr5 88748578 88749005 + 1 NA intron (NM_001131005, intron 7 of 10) intron (NM_001131005, intron 7 of 10) 36720 NM_001364353 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 216.667-24 chr2 1894909 1895325 + 1 NA intron (NM_015025, intron 14 of 24) L1PA16|LINE|L1 -150602 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 173.5-24 chr15 60247706 60248041 + 1 NA Intergenic L1ME4b|LINE|L1 150113 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 259.5-21 chr20 57748388 57748879 + 1 NA Intergenic Intergenic -37097 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 204.333-23 chr2 204862347 204862595 + 1 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 316996 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 172.333-50 chr7 3541356 3541614 + 1 NA intron (NM_152744, intron 1 of 44) L2c|LINE|L2 240233 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 260.667-34 chr3 15736942 15737507 + 1 NA non-coding (NR_146112, exon 5 of 29) non-coding (NR_146112, exon 5 of 29) 19323 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 195.667 chr1 17125667 17125877 + 1 NA Intergenic Intergenic -6321 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 172.333-24 chr15 79003540 79003746 + 1 NA intron (NM_001145648, intron 15 of 26) intron (NM_001145648, intron 15 of 26) 2017 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 225.5-27 chr8 4964529 4964940 + 1 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 30180 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 229.333-38 chr9 126513877 126514445 + 1 NA Intergenic Intergenic -100282 NM_001174146 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 278.667-21 chr22 33158720 33159163 + 1 NA Intergenic Intergenic 50412 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 181.333-9 chr16 13873819 13874065 + 1 NA Intergenic Intergenic -46215 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 275.667-17 chr4 124712991 124713530 + 1 NA promoter-TSS (NM_020337) promoter-TSS (NM_020337) -528 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 189.333-36 chr6 160478203 160478472 + 1 NA intron (NR_028092, intron 8 of 9) intron (NR_028092, intron 8 of 9) 32787 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 277.333-4 chr1 203342241 203342757 + 1 NA intron (NR_103757, intron 1 of 1) intron (NR_103757, intron 1 of 1) 8623 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 176.333-14 chr2 27846756 27847069 + 1 NA intron (NM_022128, intron 4 of 7) intron (NM_022128, intron 4 of 7) -41797 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 315.333 chr1 43650347 43650857 + 1 NA intron (NM_014663, intron 1 of 21) CpG 453 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 185.833-2 chr1 223670699 223670936 + 1 NA Intergenic MIRc|SINE|MIR -5116 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 227.5-8 chr1 112396199 112396599 + 1 NA intron (NM_018704, intron 1 of 5) intron (NM_018704, intron 1 of 5) 185 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 185.333-52 chr8 87221188 87221405 + 1 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 354881 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 187.667-9 chr11 79839271 79839586 + 1 NA Intergenic Intergenic -398398 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 263.667-2 chr1 233602472 233603089 + 1 NA Intergenic Intergenic -11326 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 246.333-27 chr22 47631389 47631747 + 1 NA promoter-TSS (NR_033377) promoter-TSS (NR_033377) 1 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 167.667-6 chr12 13435008 13435223 + 1 NA Intergenic L1ME4a|LINE|L1 -58370 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 173.667-37 chr3 190333544 190333812 + 1 NA Intergenic Intergenic -11232 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 273.167-4 chr15 47117736 47118187 + 1 NA Intergenic AluY|SINE|Alu -66128 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 186.5-10 chr16 54853268 54853570 + 1 NA Intergenic Intergenic -5186 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 214.333-30 chr3 88275617 88275873 + 1 NA Intergenic Intergenic -62711 NM_001368168 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 284.333-6 chr12 41493428 41493849 + 1 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 55899 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 193.5-14 chr15 33973782 33974069 + 1 NA intron (NM_001320917, intron 1 of 1) intron (NM_001320917, intron 1 of 1) 5428 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 222.333-23 chr5 29587148 29587480 + 1 NA Intergenic L1M2|LINE|L1 -191338 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 216.667-54 chrX 46759491 46759763 + 1 NA promoter-TSS (NM_032591) promoter-TSS (NM_032591) -509 NM_032591 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 178.333-37 chr7 30164687 30165111 + 1 NA Intergenic Intergenic 29913 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 168.333-25 chr15 100745598 100745870 + 1 NA Intergenic L1MCa|LINE|L1 -104018 NR_160702 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 166.5-4 chr10 73961304 73961620 + 1 NA Intergenic L1ME3A|LINE|L1 -36652 NM_014000 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 219.833-25 chr7 76340265 76340497 + 1 NA intron (NM_012479, intron 1 of 1) L1MC|LINE|L1 18610 NM_012479 7532 Hs.744840 NM_012479 ENSG00000170027 YWHAG 14-3-3GAMMA|EIEE56|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma protein-coding 207.5-6 chr10 36759227 36759555 + 1 NA Intergenic Intergenic -366466 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 213.333-21 chr22 27643813 27644128 + 1 NA Intergenic Intergenic 157786 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 163.667-24 chr18 2117625 2117969 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR 453708 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 210.5-3 chr10 44836309 44836755 + 1 NA intron (NR_033842, intron 2 of 7) L1MC|LINE|L1 -74784 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 251.833-6 chr19 46395284 46395608 + 1 NA Intergenic AluSx3|SINE|Alu 18118 NM_032040 83987 Hs.97876 NM_032040 ENSG00000169515 CCDC8 3M3|PPP1R20|p90 coiled-coil domain containing 8 protein-coding 385.667-10 chr5 11048322 11048707 + 1 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -287280 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 175.667-42 chr4 123834021 123834434 + 1 NA intron (NR_027105, intron 4 of 5) intron (NR_027105, intron 4 of 5) 59963 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 193.333-47 chr5 142014789 142015127 + 1 NA Intergenic Intergenic -1931 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 252.5-9 chr12 101759427 101759893 + 1 NA intron (NM_024312, intron 16 of 20) intron (NM_024312, intron 16 of 20) -20188 NM_001177948 50511 Hs.506504 NM_153694 ENSG00000139351 SYCP3 COR1|RPRGL4|SCP3|SPGF4 synaptonemal complex protein 3 protein-coding 169.667-14 chr10 130452465 130452634 + 1 NA Intergenic L2|LINE|L2 316140 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 196.833-27 chr8 53884962 53885355 + 1 NA intron (NR_104579, intron 1 of 3) intron (NR_104579, intron 1 of 3) 4286 NR_104579 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 177.333-19 chr20 49031863 49032168 + 1 NA intron (NM_006420, intron 37 of 38) intron (NM_006420, intron 37 of 38) 14041 NR_110624 102723483 Hs.209000 NR_110624 ENSG00000227431 CSE1L-AS1 - CSE1L antisense RNA 1 ncRNA 240.667-10 chr12 48891725 48892162 + 1 NA Intergenic AluSx|SINE|Alu -12190 NM_033124 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 178.833-12 chr15 80235041 80235240 + 1 NA intron (NM_001352888, intron 1 of 2) intron (NM_001352888, intron 1 of 2) 17073 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 180.333-52 chr8 81394609 81394895 + 1 NA Intergenic Intergenic 52687 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 253.5-13 chr14 73902186 73902685 + 1 NA intron (NR_040251, intron 5 of 11) intron (NR_040251, intron 5 of 11) 15576 NM_001242927 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 244.5-29 chr6 105982799 105983114 + 1 NA Intergenic Intergenic -103380 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 164.833-21 chr8 130681099 130681355 + 1 NA Intergenic MIR|SINE|MIR -237553 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 353.333-8 chr15 63817890 63818462 + 1 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 15772 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 165.333-35 chr5 20127066 20127415 + 1 NA intron (NM_001291956, intron 2 of 14) MSTA|LTR|ERVL-MaLR -139040 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 200.333-21 chr19 48558284 48558532 + 1 NA intron (NM_177973, intron 1 of 6) CpG 6236 NM_177973 6820 Hs.369331 NM_004605 ENSG00000088002 SULT2B1 ARCI14|HSST2 sulfotransferase family 2B member 1 protein-coding 384.333 chr11 23454474 23454891 + 1 NA Intergenic Intergenic -35492 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 295.5-15 chr4 81845671 81846047 + 1 NA Intergenic Intergenic -373952 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 166.667-11 chr12 10164424 10164893 + 1 NA intron (NM_001172633, intron 3 of 4) intron (NM_001172633, intron 3 of 4) -5941 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 311.667-6 chr16 10523297 10523824 + 1 NA intron (NR_149081, intron 1 of 1) AluSc|SINE|Alu 4638 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 283.5-17 chrX 40390601 40391147 + 1 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 127957 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 316.667-16 chr6 130020785 130021648 + 1 NA intron (NM_001346550, intron 1 of 21) CpG 1572 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 170.5-21 chr2 50115239 50115440 + 1 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -141136 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 236.667-10 chr14 96296808 96297268 + 1 NA intron (NM_018036, intron 34 of 41) L1ME3E|LINE|L1 40828 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 222.667 chr1 23118852 23119144 + 1 NA intron (NM_033631, intron 1 of 4) intron (NM_033631, intron 1 of 4) 49858 NM_033631 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 213.333-49 chr9 27527511 27527875 + 1 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) 2121 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 176.667-19 chr17 42583070 42583276 + 1 NA intron (NM_178126, intron 7 of 8) intron (NM_178126, intron 7 of 8) -5342 NM_001256015 29893 Hs.383019 NM_013290 ENSG00000131470 PSMC3IP GT198|HOP2|HUMGT198A|ODG3|TBPIP PSMC3 interacting protein protein-coding 187.667-15 chr13 46992345 46992660 + 1 NA Intergenic MIRc|SINE|MIR -95426 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 295.5-5 chr17 68821746 68822251 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 133394 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 246.667-22 chr6 161392848 161393313 + 1 NA intron (NM_004562, intron 9 of 11) MIRc|SINE|MIR -77897 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 176.5-16 chr2 44247505 44248055 + 1 NA Intergenic Intergenic -27700 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 311.667-20 chr8 79019693 79020164 + 1 NA Intergenic L1ME1|LINE|L1 182399 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 164.5-12 chr12 5347274 5347686 + 1 NA Intergenic Intergenic -84628 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 297.833-7 chr6 146140772 146141130 + 1 NA intron (NM_001278065, intron 2 of 9) L1MA3|LINE|L1 111753 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 345.166-2 chr10 119209245 119209910 + 1 NA intron (NM_005308, intron 1 of 15) intron (NM_005308, intron 1 of 15) 2006 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 190.667-32 chr22 32389923 32390278 + 1 NA intron (NM_014306, intron 11 of 11) L2a|LINE|L2 13436 NR_038918 339666 Hs.654761 NR_038918 ENSG00000230736 LOC339666 - uncharacterized LOC339666 ncRNA 197.833-4 chr1 169893993 169894249 + 1 NA promoter-TSS (NM_020423) promoter-TSS (NM_020423) -162 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 275.667-28 chr8 88028471 88028804 + 1 NA Intergenic Intergenic -154622 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 170.667-4 chr12 4506249 4506691 + 1 NA intron (NR_144382, intron 5 of 9) intron (NR_144382, intron 5 of 9) 31999 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 219.5-2 chr1 226195359 226195595 + 1 NA Intergenic L2c|LINE|L2 -8736 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 267.667-2 chr1 93444878 93445282 + 1 NA Intergenic Intergenic -3038 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 165.833-31 chr5 61817883 61818131 + 1 NA Intergenic Intergenic -82309 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 259.833 chr1 77836787 77837391 + 1 NA intron (NM_198549, intron 7 of 15) intron (NM_198549, intron 7 of 15) -51426 NM_144573 91624 Hs.612385 NM_144573 ENSG00000162614 NEXN CMH20|NELIN nexilin F-actin binding protein protein-coding 319.833-6 chr2 47683878 47684379 + 1 NA Intergenic AluY|SINE|Alu -98954 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 201.333-28 chr2 212032128 212032592 + 1 NA intron (NM_001042599, intron 2 of 26) UCON21|DNA?|DNA? 394000 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 193.5-7 chr1 227226016 227226285 + 1 NA intron (NM_001366019, intron 2 of 36) intron (NM_001366019, intron 2 of 36) 92342 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 362.167-7 chr17 41547590 41548219 + 1 NA Intergenic Intergenic 6591 NR_038442 147093 Hs.680576 NR_038442 ENSG00000226629 LINC00974 - long intergenic non-protein coding RNA 974 ncRNA 197.833-18 chr19 27839016 27839457 + 1 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -45296 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 257.667 chr1 51875390 51875887 + 1 NA intron (NM_001101662, intron 1 of 30) AluJb|SINE|Alu 2402 NM_001242361 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 243.333-34 chr5 12320472 12320901 + 1 NA Intergenic L1PA13|LINE|L1 -254171 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 263.667-11 chr17 62996283 62996657 + 1 NA intron (NM_025185, intron 1 of 25) MER57A1|LTR|ERV1 30235 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 223.5-31 chr8 136198031 136198457 + 1 NA Intergenic Intergenic -332554 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 273.333-5 chr12 120469852 120470457 + 1 NA promoter-TSS (NM_003769) promoter-TSS (NM_003769) 312 NM_001037494 8655 Hs.5120 NM_003746 ENSG00000088986 DYNLL1 DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1 dynein light chain LC8-type 1 protein-coding 325.667-2 chr11 9507698 9508246 + 1 NA intron (NM_001282656, intron 11 of 15) L1MC5|LINE|L1 46960 NM_003442 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 316.333-17 chr3 36773756 36774269 + 1 NA Intergenic Intergenic -34151 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 169.667-60 chr8 86192557 86192793 + 1 NA Intergenic Intergenic 37706 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 212.5-17 chr18 4246594 4246874 + 1 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -17868 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 401.5-12 chr9 102049603 102050481 + 1 NA Intergenic L2a|LINE|L2 -311462 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 191.167-8 chr13 107647405 107647610 + 1 NA intron (NM_001080396, intron 1 of 2) L1ME3Cz|LINE|L1 -116259 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 248.333-2 chr1 54810418 54811060 + 1 NA intron (NM_001110533, intron 4 of 9) intron (NM_001110533, intron 4 of 9) 4676 NM_152607 163747 Hs.376018 NM_152607 ENSG00000162398 LEXM C1orf177|LEM lymphocyte expansion molecule protein-coding 183.333-60 chr7 9334866 9335194 + 1 NA Intergenic Intergenic -299240 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 332.667-9 chr2 56010339 56010982 + 1 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) -9865 NR_030623 100126319 NR_030623 ENSG00000211520 MIR216B MIRN216B|mir-216b microRNA 216b ncRNA 250.667-28 chr3 59012506 59013016 + 1 NA intron (NR_147235, intron 4 of 6) A-rich|Low_complexity|Low_complexity 37264 NM_001351532 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 285.5-25 chr5 6909958 6910312 + 1 NA Intergenic Intergenic -82214 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 310.5-17 chr8 18544891 18545413 + 1 NA intron (NM_015310, intron 15 of 15) intron (NM_015310, intron 15 of 15) 153870 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 165.333-10 chr11 25928726 25929107 + 1 NA Intergenic Intergenic -260207 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 292.5-11 chr19 49118597 49119208 + 1 NA promoter-TSS (NM_003660) promoter-TSS (NM_003660) 241 NM_018111 55150 Hs.458310 NM_018111 ENSG00000221916 C19orf73 - chromosome 19 open reading frame 73 protein-coding 275.667-3 chr12 4353124 4353538 + 1 NA 3' UTR (NM_020375, exon 6 of 6) 3' UTR (NM_020375, exon 6 of 6) 26381 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 272.667-7 chr11 6876799 6877405 + 1 NA exon (NM_207186, exon 1 of 1) exon (NM_207186, exon 1 of 1) 477 NM_207186 283297 Hs.448685 NM_207186 ENSG00000170782 OR10A4 JCG5|OR10A4P olfactory receptor family 10 subfamily A member 4 protein-coding 236.667-7 chr12 111686888 111687345 + 1 NA intron (NM_025247, intron 1 of 20) intron (NM_025247, intron 1 of 20) 1063 NM_001136538 80724 Hs.331141 NM_025247 ENSG00000111271 ACAD10 - acyl-CoA dehydrogenase family member 10 protein-coding 180.5-14 chr12 69738458 69738757 + 1 NA promoter-TSS (NM_175623) promoter-TSS (NM_175623) -57 NR_159972 101928002 Hs.569096 NR_110072 LOC101928002 - uncharacterized LOC101928002 ncRNA 188.667-2 chr1 212033375 212033646 + 1 NA intron (NM_015434, intron 1 of 19) intron (NM_015434, intron 1 of 19) -2043 NM_001286229 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 222.333-32 chr8 95296306 95296612 + 1 NA intron (NR_038206, intron 1 of 4) intron (NR_038206, intron 1 of 4) -27258 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 173.667-39 chr4 138242428 138242628 + 1 NA promoter-TSS (NM_014331) promoter-TSS (NM_014331) -179 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 214.167 chr1 46191337 46191677 + 1 NA intron (NM_001243766, intron 17 of 22) intron (NM_001243766, intron 17 of 22) 5992 NM_001290130 55624 Hs.525134 NM_017739 ENSG00000085998 POMGNT1 GNTI.2|GnT I.2|LGMD2O|LGMDR15|MEB|MGAT1.2|RP76|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 334.333-9 chr2 127526552 127526910 + 1 NA promoter-TSS (NM_017969) promoter-TSS (NM_017969) -242 NM_017969 55677 Hs.469879 NM_017969 ENSG00000163166 IWS1 - interacts with SUPT6H, CTD assembly factor 1 protein-coding 170.667-43 chr6 75983125 75983369 + 1 NA intron (NM_001563, intron 12 of 16) intron (NM_001563, intron 12 of 16) 89415 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 223.167-2 chr1 110343354 110343762 + 1 NA intron (NM_001201545, intron 1 of 1) intron (NM_001201545, intron 1 of 1) 4235 NM_022768 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 340.667 chr1 62438477 62438876 + 1 NA intron (NM_003368, intron 1 of 8) intron (NM_003368, intron 1 of 8) 1627 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 243.833-11 chr14 32225223 32225487 + 1 NA Intergenic (TT)n|Simple_repeat|Simple_repeat -22086 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 163.833-13 chr15 63672888 63673234 + 1 NA intron (NM_003922, intron 38 of 77) intron (NM_003922, intron 38 of 77) -72234 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 202.5-8 chr10 76302179 76302483 + 1 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 519570 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 217.667-38 chr7 134458424 134458936 + 1 NA intron (NM_001346142, intron 1 of 9) CpG 420 NM_001628 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 212.667-27 chr2 162017082 162017423 + 1 NA intron (NM_001935, intron 16 of 25) intron (NM_001935, intron 16 of 25) 56963 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 176.833-11 chr12 11631537 11631926 + 1 NA Intergenic Intergenic -18123 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 377.667 chr1 212636456 212636997 + 1 NA Intergenic Intergenic 12252 NM_153606 149647 Hs.129293 NM_153606 ENSG00000162771 FAM71A GARI-L4 family with sequence similarity 71 member A protein-coding 178.833-37 chr7 22431882 22432282 + 1 NA intron (NM_207342, intron 4 of 4) MLT1A0|LTR|ERVL-MaLR 68200 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 220.667-10 chr11 33624625 33624897 + 1 NA intron (NM_012194, intron 16 of 20) L1PA3|LINE|L1 75979 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 233.167-4 chr11 59097528 59098044 + 1 NA Intergenic AluSg7|SINE|Alu -9399 NM_001142704 374393 Hs.186579 NM_198947 ENSG00000189057 FAM111B CANP|POIKTMP family with sequence similarity 111 member B protein-coding 244.667-26 chr5 57586967 57587398 + 1 NA intron (NR_120607, intron 4 of 5) intron (NR_120607, intron 4 of 5) 16840 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 195.833-13 chr14 82672392 82672706 + 1 NA intron (NR_146650, intron 2 of 5) L2c|LINE|L2 29917 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 194.667-13 chr11 44645816 44646188 + 1 NA Intergenic L1ME1|LINE|L1 80339 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 386.333-4 chr17 32827776 32828379 + 1 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 49047 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 210.5-9 chr12 48741931 48742235 + 1 NA intron (NM_001351125, intron 2 of 4) intron (NM_001351125, intron 2 of 4) 14648 NM_001351125 255411 Hs.404103 NM_001351123 ENSG00000257987 TEX49 LINC00935 testis expressed 49 protein-coding 246.833-9 chr3 194328930 194329355 + 1 NA Intergenic Tigger15a|DNA|TcMar-Tigger -16338 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 192.333-22 chr17 59368407 59368871 + 1 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) 2556 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 252.167-21 chr5 149134712 149135132 + 1 NA Intergenic L1ME3G|LINE|L1 -6525 NM_001301018 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 163.5-54 chrX 51144963 51145230 + 1 NA intron (NR_110382, intron 1 of 8) L1MA4|LINE|L1 26325 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 206.667-16 chr15 70956909 70957398 + 1 NA intron (NM_017691, intron 8 of 15) intron (NM_017691, intron 8 of 15) 64710 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 330.333-3 chr20 1856305 1856679 + 1 NA Intergenic MIRb|SINE|MIR -37675 NM_001330728 140885 Hs.581021 NM_080792 ENSG00000198053 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal regulatory protein alpha protein-coding 327.667-9 chr2 73156584 73157023 + 1 NA Intergenic Intergenic -43855 NM_001371272 174.333-19 chr2 44043729 44044025 + 1 NA Intergenic Intergenic -47888 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 210.167-5 chr1 202134544 202134920 + 1 NA intron (NM_138795, intron 6 of 6) AluJr|SINE|Alu 10005 NM_138795 127829 Hs.497399 NM_138795 ENSG00000143862 ARL8A ARL10B|GIE2 ADP ribosylation factor like GTPase 8A protein-coding 302.667-14 chr8 82597909 82598441 + 1 NA Intergenic L1M5|LINE|L1 -313929 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 170.333-47 chr5 179665011 179665309 + 1 NA intron (NR_134259, intron 3 of 3) intron (NR_134259, intron 3 of 3) 7054 NR_134259 105377763 Hs.571027 NR_134259 LOC105377763 - uncharacterized LOC105377763 ncRNA 262.333-10 chr14 70488865 70489452 + 1 NA Intergenic L1M1|LINE|L1 -5402 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 198.667-41 chr6 151276231 151276481 + 1 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) 36389 NM_005100 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 181.833-5 chr15 43770505 43770949 + 1 NA intron (NM_005313, intron 12 of 12) AluSp|SINE|Alu 6239 NM_025165 80237 Hs.706346 NM_025165 ENSG00000128886 ELL3 - elongation factor for RNA polymerase II 3 protein-coding 367.667-3 chr15 73700246 73700700 + 1 NA intron (NM_001024736, intron 2 of 9) intron (NM_001024736, intron 2 of 9) 15703 NM_001329628 80381 Hs.744915 NM_025240 ENSG00000103855 CD276 4Ig-B7-H3|B7-H3|B7H3|B7RP-2 CD276 molecule protein-coding 255.833-17 chr5 62537532 62537920 + 1 NA intron (NM_016338, intron 24 of 29) intron (NM_016338, intron 24 of 29) -41009 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 198.333-35 chr5 75457591 75457841 + 1 NA intron (NM_031361, intron 3 of 16) intron (NM_031361, intron 3 of 16) 53913 NM_031361 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 167.667-16 chr18 7601148 7601385 + 1 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 33950 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 266.667-25 chr8 126302395 126302780 + 1 NA Intergenic MIRb|SINE|MIR -22908 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 193.667-32 chr20 45668691 45669096 + 1 NA intron (NM_147197, intron 1 of 4) intron (NM_147197, intron 1 of 4) 1346 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 226.667-5 chr10 59580606 59580987 + 1 NA Intergenic Intergenic 129095 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 230.333-30 chr7 114345279 114345709 + 1 NA intron (NR_033766, intron 2 of 19) intron (NR_033766, intron 2 of 19) -69321 NM_001172766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 330.833-8 chr17 61721990 61722678 + 1 NA intron (NM_032043, intron 16 of 19) AluSc8|SINE|Alu -131115 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 292.5-4 chr11 10549954 10550352 + 1 NA intron (NR_034094, intron 1 of 2) AluY|SINE|Alu 8917 NR_046375 100129827 Hs.246769 NR_034093 ENSG00000177112 MRVI1-AS1 - MRVI1 antisense RNA 1 ncRNA 211.5-32 chr21 19541616 19541949 + 1 NA Intergenic Intergenic 357973 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 264.333-17 chr2 203909453 203909897 + 1 NA Intergenic Intergenic -27073 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 183.167-35 chr6 153156182 153156431 + 1 NA Intergenic L1ME3G|LINE|L1 -25024 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 193.667-37 chr3 106682710 106682960 + 1 NA Intergenic MIR|SINE|MIR 557803 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 204.167-21 chr7 94199030 94199586 + 1 NA Intergenic L1MC5a|LINE|L1 192884 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 321.5-21 chr6 149251707 149252240 + 1 NA intron (NR_149096, intron 1 of 2) (T)n|Simple_repeat|Simple_repeat 5578 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 262.5-29 chr8 64795199 64795693 + 1 NA intron (NM_004820, intron 1 of 5) L2|LINE|L2 3291 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 260.333-6 chr17 59396993 59397423 + 1 NA 3' UTR (NM_001005404, exon 5 of 5) 3' UTR (NM_001005404, exon 5 of 5) 31125 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 277.667-3 chr11 82924160 82924514 + 1 NA intron (NM_001363481, intron 2 of 4) Charlie4z|DNA|hAT-Charlie -22597 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 268.833-4 chr10 86830525 86830838 + 1 NA intron (NM_004329, intron 1 of 12) L1MD1|LINE|L1 74042 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 278.667-9 chr13 51338736 51339271 + 1 NA Intergenic Helitron1Na_Mam|RC|Helitron -2029 NM_001101320 647174 Hs.685891 NM_001101320 ENSG00000253309 SERPINE3 - serpin family E member 3 protein-coding 314.667-8 chr2 70141295 70141845 + 1 NA Intergenic Intergenic -16254 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 357.333-7 chr2 209258302 209258678 + 1 NA Intergenic Intergenic -165557 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 169.667-59 chr7 111599085 111599499 + 1 NA Intergenic AluSx|SINE|Alu -36775 NM_001350961 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 173.333-24 chr4 43735048 43735273 + 1 NA Intergenic L1MA2|LINE|L1 -242617 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 343.667-2 chr1 87005039 87005727 + 1 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 90748 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 354.5-7 chr4 88205051 88205436 + 1 NA intron (NM_001257386, intron 1 of 15) intron (NM_001257386, intron 1 of 15) 26383 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 172.333-14 chr12 50989910 50990127 + 1 NA intron (NR_033422, intron 15 of 17) intron (NR_033422, intron 15 of 17) 19197 NM_001174130 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 275.667-25 chr7 26674765 26675231 + 1 NA intron (NM_003930, intron 11 of 12) intron (NM_003930, intron 11 of 12) 37127 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 178.667-30 chr3 89854198 89854406 + 1 NA Intergenic Intergenic 746681 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 287.5-8 chr2 5293756 5294159 + 1 NA Intergenic Intergenic 397161 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 220.667-28 chr4 173484914 173485325 + 1 NA intron (NM_001329597, intron 1 of 3) (TATATTA)n|Simple_repeat|Simple_repeat 34119 NM_001329597 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 174.667-32 chr3 16180226 16180464 + 1 NA intron (NM_001319051, intron 1 of 9) MER5A1|DNA|hAT-Charlie 5665 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 395.667-5 chr2 193720936 193721624 + 1 NA Intergenic MIR|SINE|MIR -622989 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 184.833-5 chr10 41883935 41884498 + 1 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 483829 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 209.5-28 chr5 18450573 18450966 + 1 NA Intergenic L1M4c|LINE|L1 643495 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 222.333-8 chr14 23047617 23048008 + 1 NA 3' UTR (NM_022478, exon 13 of 14) 3' UTR (NM_022478, exon 13 of 14) 5600 NM_001099780 122706 Hs.508918 NM_001099780 ENSG00000222028 PSMB11 BETA5T proteasome subunit beta 11 protein-coding 230.667-25 chr7 43629692 43629941 + 1 NA intron (NR_163918, intron 8 of 9) MIR3|SINE|MIR 46708 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 324.5-11 chr6 125311849 125312570 + 1 NA Intergenic Intergenic -10242 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 182.333-4 chr10 69826898 69827185 + 1 NA intron (NM_001368898, intron 3 of 33) MLT1J|LTR|ERVL-MaLR 25135 NM_001320951 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 171.667-59 chr8 87141620 87141849 + 1 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 275319 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 266.333-8 chr11 90469037 90469454 + 1 NA intron (NR_104190, intron 1 of 6) L1MC3|LINE|L1 86612 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 181.667-46 chr8 105905072 105905375 + 1 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 155280 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 178.333-38 chr7 106154079 106154310 + 1 NA Intergenic Intergenic -41618 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 268.5-19 chr20 56838406 56838943 + 1 NA Intergenic Intergenic 209368 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 196.333-25 chr2 124926520 124926814 + 1 NA Intergenic FAM|SINE|Alu 901380 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 198.5-39 chr6 43341836 43342113 + 1 NA intron (NM_014345, intron 8 of 9) intron (NM_014345, intron 8 of 9) 27673 NM_014345 24149 Hs.509718 NM_014345 ENSG00000171467 ZNF318 HRIHFB2436|TZF|ZFP318 zinc finger protein 318 protein-coding 199.167-20 chr3 133494681 133495091 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -3740 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 251.167-2 chr1 167686807 167687335 + 1 NA intron (NM_052862, intron 3 of 6) intron (NM_052862, intron 3 of 6) -34911 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 213.5-31 chr7 70092970 70093328 + 1 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 494674 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 221.833-10 chr17 5448526 5449100 + 1 NA exon (NM_020162, exon 11 of 12) exon (NM_020162, exon 11 of 12) -9658 NM_001212 708 Hs.555866 NM_001212 ENSG00000108561 C1QBP COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32 complement C1q binding protein protein-coding 324.5-3 chr16 711479 712107 + 1 NA Intergenic Intergenic -3325 NM_024042 79006 Hs.533772 NM_024042 ENSG00000103260 METRN C16orf23|c380A1.2 meteorin, glial cell differentiation regulator protein-coding 251.333-18 chr22 25215795 25216329 + 1 NA Intergenic MIR|SINE|MIR -3577 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 315.333-19 chr6 38696328 38696948 + 1 NA intron (NM_006708, intron 1 of 5) MLT1A0|LTR|ERVL-MaLR 6507 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 220.833-21 chr7 28643227 28643898 + 1 NA intron (NM_182899, intron 4 of 9) MIR|SINE|MIR -42571 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 450.5-5 chr6 37239777 37240798 + 1 NA intron (NM_145316, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR 17312 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 191.667-40 chr6 52460083 52460397 + 1 NA intron (NR_033327, intron 4 of 9) L1ME1|LINE|L1 39232 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 212.333-38 chrX 115226812 115227060 + 1 NA intron (NM_001243963, intron 1 of 19) intron (NM_001243963, intron 1 of 19) 7136 NM_001243963 57631 Hs.65366 NM_020871 ENSG00000130224 LRCH2 dA204F4.4 leucine rich repeats and calponin homology domain containing 2 protein-coding 199.5-15 chr14 105490875 105491246 + 1 NA promoter-TSS (NM_001134875) promoter-TSS (NM_001134875) -186 NM_001367178 283643 Hs.720306 NM_173608 ENSG00000185347 TEDC1 C14orf80 tubulin epsilon and delta complex 1 protein-coding 167.333-52 chr7 12623479 12623678 + 1 NA intron (NR_156701, intron 5 of 14) intron (NR_156701, intron 5 of 14) 34055 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 483.167 chr10 78172919 78173631 + 1 NA Intergenic LTR16C|LTR|ERVL -75350 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 238.5 chr1 49970071 49970365 + 1 NA intron (NM_001323575, intron 1 of 12) L1M3|LINE|L1 53736 NM_032785 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 213.5-8 chr15 89522586 89523022 + 1 NA intron (NR_027075, intron 1 of 3) MIR3|SINE|MIR 1230 NR_027077 283761 Hs.459288 NR_027074 LINC00928 - long intergenic non-protein coding RNA 928 ncRNA 313.667-11 chr3 66378187 66378816 + 1 NA TTS (NM_015541).2 TTS (NM_015541).2 121920 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 186.667-50 chr5 104314124 104314331 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -751438 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 296.333-22 chr8 123129496 123130033 + 1 NA intron (NM_001363149, intron 15 of 21) FLAM_A|SINE|Alu -49283 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 247.333-2 chr1 180415823 180416169 + 1 NA intron (NM_032360, intron 4 of 7) intron (NM_032360, intron 4 of 7) 22394 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 173.833-15 chr13 27251298 27251661 + 1 NA promoter-TSS (NM_000982).2 promoter-TSS (NM_000982).2 -76 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 199.667-9 chr10 76286387 76286739 + 1 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 503802 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 200.5-11 chr14 43238258 43238612 + 1 NA Intergenic Intergenic 1268848 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 165.167-22 chr20 17225793 17226468 + 1 NA promoter-TSS (NM_001201529) promoter-TSS (NM_001201529) 23 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 249.833-11 chr19 3185491 3185894 + 1 NA promoter-TSS (NM_001321463) promoter-TSS (NM_001321463) -238 NM_020170 56926 Hs.657032 NM_020170 ENSG00000125912 NCLN NET59 nicalin protein-coding 202.833-15 chr20 2350494 2350933 + 1 NA Intergenic MLT1N2|LTR|ERVL-MaLR -30188 NM_001254734 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 172.833-12 chr16 66938106 66938405 + 1 NA intron (NM_198061, intron 2 of 11) intron (NM_198061, intron 2 of 11) 2739 NM_001365407 8824 Hs.282975 NM_003869 ENSG00000172831 CES2 CE-2|CES2A1|PCE-2|iCE carboxylesterase 2 protein-coding 202.5-25 chr17 72661293 72661801 + 1 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -21075 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 235.167-20 chr3 37073341 37073741 + 1 NA intron (NM_006309, intron 20 of 27) intron (NM_006309, intron 20 of 27) 80191 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 224.5-3 chr10 33177083 33177378 + 1 NA TTS (NM_001330068) TTS (NM_001330068) -60423 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 182.167-6 chr14 61342071 61342271 + 1 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 20728 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 305.5-9 chr12 12136270 12136747 + 1 NA intron (NM_002336, intron 16 of 22).2 intron (NM_002336, intron 16 of 22).2 24556 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 210.833-5 chr10 86100622 86100997 + 1 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 163979 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 190.833-16 chr2 73546550 73546935 + 1 NA intron (NM_015120, intron 12 of 22) L2c|LINE|L2 89639 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 245.333-27 chr7 37439714 37440146 + 1 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) 9022 NM_014800 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 191.333-16 chr14 100970669 100971063 + 1 NA TTS (NR_003206) TTS (NR_003206) 987 NR_003206 767591 NR_003206 ENSG00000201247 SNORD114-13 14q(II-13) small nucleolar RNA, C/D box 114-13 snoRNA 182.833-6 chr10 25182959 25183415 + 1 NA intron (NM_020752, intron 1 of 10) intron (NM_020752, intron 1 of 10) -6911 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 218.833-18 chr4 35073731 35074023 + 1 NA Intergenic Intergenic -804130 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 175.833-10 chr10 109438519 109439038 + 1 NA Intergenic L1MEc|LINE|L1 484468 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 269.5-11 chr15 72382781 72383168 + 1 NA Intergenic AluJr|SINE|Alu 6861 NR_027262 80072 Hs.591113 NM_025005 ENSG00000260339 HEXA-AS1 C15orf34 HEXA antisense RNA 1 ncRNA 210.667-41 chr5 156858753 156859041 + 1 NA Intergenic Intergenic 8602 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 209.667-15 chr17 57513781 57514206 + 1 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 9604 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 189.833 chr1 168637603 168637804 + 1 NA Intergenic Intergenic 61098 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 193.833-20 chr3 8171613 8172045 + 1 NA Intergenic L1ME3Cz|LINE|L1 -155522 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 224.333-5 chr10 34644275 34644567 + 1 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 170875 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 233.5-15 chr2 70780128 70780391 + 1 NA intron (NM_001004311, intron 3 of 4) intron (NM_001004311, intron 3 of 4) 10384 NM_001004311 344018 Hs.407636 NM_001004311 ENSG00000183733 FIGLA BHLHC8|FIGALPHA|POF6 folliculogenesis specific bHLH transcription factor protein-coding 207.5-14 chr16 61557469 61557750 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 478829 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 212.5-4 chr1 162139813 162140214 + 1 NA intron (NM_014697, intron 1 of 9) AluSz6|SINE|Alu -17094 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 227.5-28 chr4 144834579 144834964 + 1 NA Intergenic L1ME3G|LINE|L1 188615 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 213.333-26 chr4 71603039 71603414 + 1 NA Intergenic MER63C|DNA|hAT-Blackjack 180853 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 307.667-18 chr6 153003702 153004134 + 1 NA TTS (NM_012419) TTS (NM_012419) -1103 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 205.833-24 chr4 108479488 108479713 + 1 NA Intergenic Intergenic -77633 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 328.833-7 chr20 62702337 62702817 + 1 NA Intergenic Intergenic -6259 NM_002531 4923 Hs.590869 NM_002531 ENSG00000101188 NTSR1 NTR neurotensin receptor 1 protein-coding 198.833-9 chr12 57039137 57039639 + 1 NA intron (NM_005379, intron 14 of 27) intron (NM_005379, intron 14 of 27) 10741 NM_005379 4640 Hs.5394 NM_005379 ENSG00000166866 MYO1A BBMI|DFNA48|MIHC|MYHL myosin IA protein-coding 178.833-41 chr8 131626603 131626875 + 1 NA Intergenic L3|LINE|CR1 -277354 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 236.333-27 chr6 2999427 2999670 + 1 NA promoter-TSS (NM_001290222) promoter-TSS (NM_001290222) -268 NM_001290222 4835 Hs.533050 NM_000904 ENSG00000124588 NQO2 DHQV|DIA6|NMOR2|QR2 N-ribosyldihydronicotinamide:quinone reductase 2 protein-coding 235.167-11 chr15 36608337 36608801 + 1 NA intron (NM_001290232, intron 1 of 10) L1MB7|LINE|L1 13692 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 268.167-4 chr11 26286837 26287372 + 1 NA intron (NR_132968, intron 2 of 2) intron (NR_132968, intron 2 of 2) 903 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 242.667-24 chr6 42709372 42709683 + 1 NA intron (NM_000322, intron 1 of 2) L2a|LINE|L2 13070 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 219.5-24 chr4 128031894 128032223 + 1 NA TTS (NM_025097) TTS (NM_025097) -29254 NM_001278604 55132 Hs.654971 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 370.833-3 chr14 30979890 30980572 + 1 NA intron (NM_001083893, intron 1 of 17) AluSg|SINE|Alu 34511 NR_030354 693209 NR_030354 ENSG00000207952 MIR624 MIRN624|hsa-mir-624|mir-624 microRNA 624 ncRNA 287.333-7 chr20 57579386 57579790 + 1 NA Intergenic Intergenic 18478 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 171.667-42 chr4 42922724 42923057 + 1 NA intron (NM_001080476, intron 1 of 3) LTR78B|LTR|ERV1 29624 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 233.333-28 chr6 106607862 106608277 + 1 NA intron (NM_032730, intron 4 of 8) L1MA5|LINE|L1 21429 NM_032730 84816 Hs.155839 NM_032730 ENSG00000130347 RTN4IP1 NIMP|OPA10 reticulon 4 interacting protein 1 protein-coding 251.667-14 chr14 73491747 73492153 + 1 NA exon (NM_024644, exon 1 of 1) exon (NM_024644, exon 1 of 1) 1017 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 243.5-13 chr2 32355544 32356028 + 1 NA Intergenic MER31-int|LTR|ERV1 -1242 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 290.333-12 chr2 37676207 37676636 + 1 NA Intergenic Intergenic -3886 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 195.333-14 chr19 29284119 29284388 + 1 NA Intergenic Intergenic -71102 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 206.5-6 chr10 91251968 91252413 + 1 NA intron (NM_001256549, intron 6 of 9) intron (NM_001256549, intron 6 of 9) 31527 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 173.5-16 chr12 82527127 82527309 + 1 NA Intergenic Intergenic -159688 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 227.834 chr10 69134231 69135049 + 1 NA intron (NM_001318944, intron 3 of 9) L1M5|LINE|L1 10462 NM_001318945 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 170.667-10 chr16 12544362 12544566 + 1 NA intron (NM_032167, intron 20 of 20) intron (NM_032167, intron 20 of 20) -175857 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 251.5-28 chr8 35456792 35457135 + 1 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -87429 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 204.333-5 chr11 32500907 32501287 + 1 NA Intergenic Intergenic 65058 NR_120546 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 166.333-14 chr11 80410725 80411033 + 1 NA Intergenic L1PA17|LINE|L1 351924 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 196.833-29 chr9 70480267 70480522 + 1 NA Intergenic Intergenic -65737 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 200.833-14 chr15 67537139 67537684 + 1 NA Intergenic L2a|LINE|L2 -5292 NM_002757 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 177.5-6 chr10 119320945 119321279 + 1 NA intron (NM_005308, intron 1 of 15) intron (NM_005308, intron 1 of 15) -56860 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 254.5-20 chr2 30527408 30527682 + 1 NA intron (NM_182551, intron 3 of 6) intron (NM_182551, intron 3 of 6) 80299 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 257.333-26 chr8 127735041 127735541 + 1 NA promoter-TSS (NM_001354870) promoter-TSS (NM_001354870) -143 NM_001354870 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 338.333-12 chr8 124450331 124450750 + 1 NA promoter-TSS (NM_017956) promoter-TSS (NM_017956) -280 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 250.667-38 chr7 43119597 43119872 + 1 NA intron (NR_135295, intron 2 of 6) L2a|LINE|L2 1838 NR_135295 100127950 Hs.666610 NR_135295 ENSG00000181211 HECW1-IT1 - HECW1 intronic transcript 1 ncRNA 165.5-46 chr9 86777141 86777330 + 1 NA Intergenic L1ME1|LINE|L1 170271 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 273.667-7 chr15 26771785 26772058 + 1 NA intron (NM_001278631, intron 3 of 9) CpG 1145 NM_000814 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 203.333-55 chr6 166358873 166359247 + 1 NA Intergenic L1PB4|LINE|L1 16429 NR_040022 100289495 NR_040022 LOC100289495 - uncharacterized LOC100289495 ncRNA 181.333-25 chr20 44684289 44684749 + 1 NA Intergenic L2a|LINE|L2 -12780 NR_034104 79015 Hs.671450 NM_024049 ENSG00000283440 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 300.333-14 chr9 35907978 35908457 + 1 NA Intergenic Intergenic -1273 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 217.5-2 chr10 70591788 70592347 + 1 NA Intergenic L3|LINE|CR1 10674 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 170.833-19 chr2 56348538 56348966 + 1 NA intron (NM_001348515, intron 3 of 3) intron (NM_001348515, intron 3 of 3) -162982 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 163.167-21 chr19 56238987 56239250 + 1 NA intron (NM_001322061, intron 2 of 6) MIRb|SINE|MIR -8719 NM_024303 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 221.5-31 chrX 51141792 51142134 + 1 NA intron (NR_110382, intron 1 of 8) L1MA4|LINE|L1 29458 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 221.667-16 chr17 58293239 58293667 + 1 NA Intergenic L1MEf|LINE|L1 -12518 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 228.167-19 chr20 13991248 13991733 + 1 NA promoter-TSS (NM_025229) promoter-TSS (NM_025229) -876 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 341.5-7 chr12 28886284 28886648 + 1 NA Intergenic L1MB8|LINE|L1 -262812 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 361.667-5 chr12 1093109 1093753 + 1 NA intron (NR_027948, intron 3 of 19) intron (NR_027948, intron 3 of 19) 65683 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 248.333-22 chr3 7800264 7800518 + 1 NA Intergenic Intergenic 215916 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 308.5-12 chr18 76113399 76113778 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -9410 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 220.667-9 chr10 104809079 104809322 + 1 NA intron (NM_014978, intron 1 of 26) MLT1H|LTR|ERVL-MaLR -142984 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 215.333-19 chr13 60449423 60449853 + 1 NA intron (NM_030794, intron 3 of 13) intron (NM_030794, intron 3 of 13) 52418 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 247.333-15 chr22 19490758 19491475 + 1 NA intron (NM_001369291, intron 5 of 18) AluSz|SINE|Alu 11196 NR_161281 8318 Hs.474217 NM_003504 ENSG00000093009 CDC45 CDC45L|CDC45L2|MGORS7|PORC-PI-1 cell division cycle 45 protein-coding 203.833-26 chr9 37586994 37587330 + 1 NA Intergenic AluSx|SINE|Alu 5435 NM_001001790 401505 Hs.130774 NM_001001790 ENSG00000175768 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 protein-coding 194.667-45 chr5 32209800 32210109 + 1 NA Intergenic AluJb|SINE|Alu -35635 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 203.5-22 chr2 161135652 161136053 + 1 NA Intergenic Intergenic -1103 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 176.833-18 chr19 41041254 41041505 + 1 NA Intergenic L1MB8|LINE|L1 -47072 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 239.5-16 chr18 72458114 72458489 + 1 NA Intergenic Intergenic 86041 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 206.333-11 chr12 115599460 115599697 + 1 NA Intergenic Intergenic 549076 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 262.667-3 chr1 71468381 71468814 + 1 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 368415 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 213.5-23 chr4 185464645 185465052 + 1 NA intron (NM_001145411, intron 2 of 5) HAL1b|LINE|L1 -6583 NR_133944 105377590 Hs.563183 NR_133944 ENSG00000249679 LOC105377590 - uncharacterized LOC105377590 ncRNA 218.5-25 chr4 39358550 39358861 + 1 NA intron (NM_001204747, intron 1 of 24) Charlie4z|DNA|hAT-Charlie 7657 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 372.5-4 chr12 111274710 111275427 + 1 NA intron (NM_015267, intron 4 of 21) intron (NM_015267, intron 4 of 21) -29074 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 229.333-21 chr19 9948966 9949281 + 1 NA Intergenic L1MB3|LINE|L1 -12608 NM_058164 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 211.167-6 chr11 21617150 21617683 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X -575669 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 251.667-9 chr12 2065132 2065491 + 1 NA intron (NM_199460, intron 1 of 49).2 UCON28a|Unknown|Unknown 12026 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 190.5-6 chr10 111564763 111564987 + 1 NA Intergenic L1ME2|LINE|L1 450584 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 196.667-27 chr2 85299189 85299393 + 1 NA intron (NM_031283, intron 4 of 11) AluSx1|SINE|Alu 28698 NM_001368095 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 506.334-2 chr15 61556029 61556873 + 1 NA Intergenic Intergenic -173467 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 230.333-8 chr12 65314064 65314402 + 1 NA intron (NM_001031679, intron 2 of 6) intron (NM_001031679, intron 2 of 6) 35246 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 330.5-16 chrX 30329045 30329528 + 1 NA Intergenic L1MB7|LINE|L1 -19896 NM_000475 190 Hs.268490 NM_000475 ENSG00000169297 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0 group B member 1 protein-coding 198.333-3 chr1 108813677 108813910 + 1 NA Intergenic Intergenic 43301 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 320.167-7 chr2 135207573 135207925 + 1 NA exon (NM_032143, exon 19 of 21) exon (NM_032143, exon 19 of 21) 71121 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 280.833-11 chr3 66501098 66501486 + 1 NA promoter-TSS (NM_015541).2 promoter-TSS (NM_015541).2 -871 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 224.5-8 chr12 104476620 104477085 + 1 NA intron (NM_018413, intron 1 of 2) L2c|LINE|L2 19904 NM_001173982 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 412.667-9 chr7 78948543 78949217 + 1 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -60108 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 170.667-51 chr8 79311436 79311717 + 1 NA Intergenic Tigger5b|DNA|TcMar-Tigger -20612 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 331.167-13 chr5 40233369 40233928 + 1 NA Intergenic Intergenic 181357 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 378.167 chr1 66155748 66156162 + 1 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -105237 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 167.167-38 chr9 133337892 133338400 + 1 NA TTS (NM_133640).2 TTS (NM_133640).2 -1958 NM_006753 6838 Hs.274430 NM_006753 ENSG00000148296 SURF6 RRP14 surfeit 6 protein-coding 184.667-6 chr11 14788566 14789053 + 1 NA intron (NM_000922, intron 3 of 15) intron (NM_000922, intron 3 of 15) 103396 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 164.667-18 chr16 13775829 13776276 + 1 NA Intergenic Intergenic -144105 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 272.833-18 chr7 28299278 28299836 + 1 NA intron (NM_182899, intron 1 of 9) MER3|DNA|hAT-Charlie 236 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 186.667-62 chr8 24304540 24304757 + 1 NA intron (NR_125808, intron 3 of 5) AluSq|SINE|Alu 10579 NR_130710 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 175.5-34 chr20 58870205 58870526 + 1 NA intron (NR_126334, intron 3 of 4) intron (NR_126334, intron 3 of 4) 17384 NM_001077490 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 364.333 chr1 159923123 159923660 + 1 NA intron (NM_003564, intron 1 of 4) intron (NM_003564, intron 1 of 4) 343 NM_001277224 8407 Hs.517168 NM_003564 ENSG00000158710 TAGLN2 HA1756 transgelin 2 protein-coding 224.5-2 chr10 11482481 11482880 + 1 NA intron (NM_014688, intron 13 of 14) L1M5|LINE|L1 49600 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 209.833-11 chr14 94688843 94689370 + 1 NA Intergenic L1ME3B|LINE|L1 48381 NR_015340 388007 Hs.527795 NR_015340 ENSG00000187483 SERPINA13P SERPINA13|UNQ6121 serpin family A member 13, pseudogene pseudo 247.167-18 chr5 174021477 174021831 + 1 NA Intergenic Intergenic -24052 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 178.667-36 chr5 96943606 96943942 + 1 NA intron (NM_005575, intron 1 of 17) intron (NM_005575, intron 1 of 17) 7694 NM_005575 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 165.5-20 chr17 68515357 68515899 + 1 NA intron (NM_212472, intron 2 of 10) intron (NM_212472, intron 2 of 10) 234 NM_001276290 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 263.667 chr1 224103582 224103869 + 1 NA Intergenic AluSz|SINE|Alu -10386 NM_015176 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 206.5-57 chr8 89921685 89922008 + 1 NA intron (NM_001126111, intron 5 of 5) AluSx|SINE|Alu 19276 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 173.667-22 chr17 38957164 38957350 + 1 NA intron (NM_001008777, intron 3 of 10) intron (NM_001008777, intron 3 of 10) 10146 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 270.333-16 chrX 153032754 153033252 + 1 NA Intergenic Intergenic -23467 NM_013364 29944 Hs.449627 NM_013364 ENSG00000183837 PNMA3 MA3|MA5 PNMA family member 3 protein-coding 256.5-15 chr2 99365891 99366301 + 1 NA intron (NM_015904, intron 6 of 23) intron (NM_015904, intron 6 of 23) 28707 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 207.667-51 chrX 150716549 150717062 + 1 NA intron (NM_001353990, intron 3 of 15) intron (NM_001353990, intron 3 of 15) 5050 NM_001353995 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 219.5-37 chr8 86601882 86602230 + 1 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 87621 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 259.5-29 chr5 127536497 127536924 + 1 NA intron (NM_130809, intron 6 of 8) intron (NM_130809, intron 6 of 8) 19070 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 194.833-21 chr5 6781298 6781525 + 1 NA Intergenic AluJr|SINE|Alu -14469 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 226.167 chr1 23344432 23344837 + 1 NA promoter-TSS (NM_001102398) promoter-TSS (NM_001102398) -350 NM_001297622 10236 Hs.373763 NM_005826 ENSG00000125944 HNRNPR HNRPR|hnRNP-R heterogeneous nuclear ribonucleoprotein R protein-coding 223.667 chr1 11423046 11423368 + 1 NA Intergenic MER49|LTR|ERV1 -55948 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 308.833-5 chr10 93498299 93498791 + 1 NA intron (NM_018131, intron 1 of 8) intron (NM_018131, intron 1 of 8) 1933 NM_001127182 55165 Hs.14559 NM_018131 ENSG00000138180 CEP55 C10orf3|CT111|MARCH|URCC6 centrosomal protein 55 protein-coding 211.833-5 chr12 130870617 130871215 + 1 NA Intergenic Intergenic -1078 NM_001300796 5901 Hs.10842 NM_006325 ENSG00000132341 RAN ARA24|Gsp1|TC4 RAN, member RAS oncogene family protein-coding 257.667-10 chr2 24664821 24665175 + 1 NA intron (NM_001362950, intron 5 of 23) intron (NM_001362950, intron 5 of 23) 80521 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 295.333-2 chr1 209844842 209845261 + 1 NA intron (NM_014388, intron 11 of 11) intron (NM_014388, intron 11 of 11) 17079 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 232.167-20 chr7 90839106 90839693 + 1 NA intron (NM_012395, intron 4 of 13) intron (NM_012395, intron 4 of 13) 129583 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 196.667-37 chr5 132305607 132305883 + 1 NA intron (NM_003059, intron 1 of 9) L1MB7|LINE|L1 11351 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 189.667-8 chr10 68102733 68103007 + 1 NA Intergenic Intergenic -3137 NR_045662 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 220.833-10 chr14 97525002 97525284 + 1 NA intron (NR_110166, intron 2 of 4) intron (NR_110166, intron 2 of 4) 66327 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 249.5-27 chr8 125983777 125984125 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR -32754 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 266.833-7 chr19 46010666 46011223 + 1 NA intron (NM_001267723, intron 5 of 13) L1MC5a|LINE|L1 -7988 NR_030412 768217 NR_030412 ENSG00000211580 MIR769 MIRN769|hsa-mir-769|mir-769 microRNA 769 ncRNA 174.667-35 chr3 148308634 148308907 + 1 NA intron (NR_146712, intron 2 of 4) L1MEg|LINE|L1 27879 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 316.333-13 chr2 213995161 213995645 + 1 NA intron (NR_047660, intron 11 of 14) intron (NR_047660, intron 11 of 14) 237336 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 205.5-24 chr3 142174951 142175211 + 1 NA intron (NM_001039547, intron 12 of 15) intron (NM_001039547, intron 12 of 15) -25537 NM_001178139 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 208.667-2 chr1 159862269 159862511 + 1 NA intron (NM_001013661, intron 1 of 6) intron (NM_001013661, intron 1 of 6) 267 NM_001013661 391123 Hs.647718 NM_001013661 ENSG00000243284 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 231.333-2 chr1 45041113 45041462 + 1 NA intron (NM_020883, intron 6 of 13) L2c|LINE|L2 29033 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 213.333-39 chr6 146775120 146775499 + 1 NA intron (NM_024694, intron 29 of 35) intron (NM_024694, intron 29 of 35) 28515 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 167.667-22 chr20 37590226 37590416 + 1 NA Intergenic Intergenic 32798 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 169.833-43 chr8 83235495 83235947 + 1 NA Intergenic L1M2|LINE|L1 -168037 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 188.333-5 chr1 181156784 181157126 + 1 NA Intergenic Intergenic -17529 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 193.333-3 chr1 197607921 197608251 + 1 NA intron (NR_125340, intron 11 of 19) intron (NR_125340, intron 11 of 19) 167394 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 234.667 chr1 77861230 77861756 + 1 NA intron (NM_198549, intron 12 of 15) intron (NM_198549, intron 12 of 15) -27022 NM_144573 91624 Hs.612385 NM_144573 ENSG00000162614 NEXN CMH20|NELIN nexilin F-actin binding protein protein-coding 352.333-8 chr2 12876568 12877277 + 1 NA Intergenic Intergenic 130091 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 276.833-8 chr2 25349991 25350589 + 1 NA Intergenic MSTB1|LTR|ERVL-MaLR -7700 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 226.667-4 chr10 51868019 51868460 + 1 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -168644 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 269.667-23 chr5 123792690 123793164 + 1 NA Intergenic L1ME3G|LINE|L1 247510 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 179.5-49 chr8 114725206 114725507 + 1 NA Intergenic L1PA14|LINE|L1 942657 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 239.667-34 chr5 44926943 44927274 + 1 NA Intergenic Intergenic 118161 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 267.333-7 chr14 31652471 31652991 + 1 NA intron (NM_001201573, intron 2 of 8) intron (NM_001201573, intron 2 of 8) -61838 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 195.167-12 chr14 60156085 60156573 + 1 NA intron (NM_001322280, intron 1 of 6) intron (NM_001322280, intron 1 of 6) 9069 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 225.667-16 chr19 30989058 30989343 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR -178310 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 196.833-7 chr14 87612308 87612695 + 1 NA Intergenic AluSx|SINE|Alu 42793 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 163.5-52 chr9 27056741 27056934 + 1 NA intron (NM_025103, intron 18 of 19) intron (NM_025103, intron 18 of 19) -51165 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 188.5-26 chr22 48374824 48375056 + 1 NA Intergenic Intergenic 100576 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 254.5-10 chr16 26782338 26782659 + 1 NA Intergenic Intergenic -284429 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 179.5-18 chr16 17182084 17182426 + 1 NA intron (NM_022166, intron 5 of 11) MLT1A|LTR|ERVL-MaLR 47751 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 305.333 chr1 40316712 40317213 + 1 NA intron (NM_001852, intron 1 of 31) CpG 324 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 174.333-28 chr4 62263701 62263927 + 1 NA Intergenic Intergenic -102049 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 190.667-42 chr4 70542834 70543123 + 1 NA Intergenic L1MC2|LINE|L1 24409 NM_001286731 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 393.667-3 chr2 33033809 33034341 + 1 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) 87122 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 215.667-5 chr10 93877015 93877400 + 1 NA Intergenic L1ME3A|LINE|L1 -16771 NR_144335 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 185.333-62 chrX 118844771 118844986 + 1 NA intron (NR_110393, intron 2 of 6) L1MC5a|LINE|L1 5322 NR_110393 101928287 Hs.496647 NR_110393 ENSG00000203650 LINC01285 - long intergenic non-protein coding RNA 1285 ncRNA 225.333-4 chr1 166496467 166496874 + 1 NA Intergenic L1M2|LINE|L1 -6631 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 206.667-22 chr17 69526924 69527175 + 1 NA intron (NM_001330450, intron 10 of 11) L2c|LINE|L2 24787 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 250.667-7 chr13 76670665 76670972 + 1 NA Intergenic Intergenic 215587 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 194.5-6 chr1 211372177 211372371 + 1 NA exon (NM_004619, exon 11 of 11) exon (NM_004619, exon 11 of 11) -10481 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 181.667 chr1 32248141 32248337 + 1 NA intron (NM_032648, intron 1 of 1) intron (NM_032648, intron 1 of 1) 1017 NM_032648 84734 Hs.18449 NM_032648 ENSG00000183615 FAM167B C1orf90|DIORA-2 family with sequence similarity 167 member B protein-coding 169.5-40 chr6 63282535 63282865 + 1 NA intron (NM_001143940, intron 3 of 4) intron (NM_001143940, intron 3 of 4) 37277 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 192.667-29 chr5 82562650 82562887 + 1 NA Intergenic L1PREC2|LINE|L1 -277387 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 226.5-31 chr4 120718899 120719125 + 1 NA intron (NM_001300824, intron 12 of 13) intron (NM_001300824, intron 12 of 13) 203854 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 244.667-28 chr6 27806483 27806994 + 1 NA TTS (NM_003519) TTS (NM_003519) 1193 NM_003519 8340 Hs.137594 NM_003519 ENSG00000185130 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1 H2B family member l protein-coding 202.667 chr1 37011651 37012063 + 1 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 22658 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 202.5-44 chr6 536462 536700 + 1 NA intron (NM_018303, intron 22 of 27) L1MD|LINE|L1 120383 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 172.667-46 chr5 54906579 54906918 + 1 NA Intergenic Intergenic 78845 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 201.333-52 chr8 83747949 83748240 + 1 NA Intergenic Intergenic 344336 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 351.667-12 chr3 108160582 108161206 + 1 NA TTS (NM_018010) TTS (NM_018010) 35073 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 362.5-8 chr22 22962872 22963355 + 1 NA Intergenic Intergenic 75297 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 236.333-28 chr6 45646890 45647224 + 1 NA Intergenic LTR38|LTR|ERV1 224782 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 256.833-4 chr10 96993776 96994185 + 1 NA 3' UTR (NM_001346516, exon 8 of 8) 3' UTR (NM_001346516, exon 8 of 8) -108776 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 163.333-24 chr16 76650076 76650296 + 1 NA intron (NR_110934, intron 2 of 3) MER106A|DNA|hAT-Charlie 15188 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 210.333-36 chr9 1583082 1583538 + 1 NA Intergenic L1M4|LINE|L1 -432037 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 186.5-19 chr22 28976711 28977229 + 1 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 54506 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 171.333-52 chr8 30063775 30063994 + 1 NA 3' UTR (NM_001284239, exon 5 of 5) 3' UTR (NM_001284239, exon 5 of 5) 19180 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 210.333-30 chr6 50553194 50553594 + 1 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat -160150 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 188.667-3 chr1 229460609 229460848 + 1 NA exon (NM_018230, exon 20 of 26) exon (NM_018230, exon 20 of 26) -26632 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 165.667-18 chr14 59805455 59805774 + 1 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 65162 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 255.333-10 chr17 63911750 63912159 + 1 NA promoter-TSS (NM_001318) promoter-TSS (NM_001318) -696 NM_001321067 1444 Hs.654390 NM_001318 ENSG00000204414 CSHL1 CS-5|CSHP1|CSL|GHB4|hCS-L chorionic somatomammotropin hormone like 1 protein-coding 226.667-24 chr2 157492866 157493211 + 1 NA Intergenic MER65C|LTR|ERV1 -48949 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 241.833-6 chr2 35999625 36000045 + 1 NA Intergenic Intergenic 355735 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 205.167-10 chr2 69829068 69829433 + 1 NA promoter-TSS (NM_178439) promoter-TSS (NM_178439) -410 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 229.833-23 chr6 106872150 106872487 + 1 NA Intergenic Intergenic -84777 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 315.5 chr1 147868100 147868645 + 1 NA Intergenic Intergenic -34423 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 253.667-21 chr17 60923083 60923536 + 1 NA intron (NM_001330413, intron 12 of 25) intron (NM_001330413, intron 12 of 25) 245458 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 214.333-10 chr12 17163987 17164427 + 1 NA Intergenic MIR|SINE|MIR 175460 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 196.5-13 chr14 95431427 95431650 + 1 NA intron (NM_001363692, intron 16 of 16) (ATTGTT)n|Simple_repeat|Simple_repeat 44297 NM_152592 161176 Hs.41502 NM_024633 ENSG00000176438 SYNE3 C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3 spectrin repeat containing nuclear envelope family member 3 protein-coding 189.5-5 chr11 84141785 84142059 + 1 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 131358 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 219.667-4 chr13 51389041 51389512 + 1 NA intron (NM_001306091, intron 8 of 19) intron (NM_001306091, intron 8 of 19) -40637 NR_049878 100847003 NR_049878 ENSG00000266072 MIR5693 - microRNA 5693 ncRNA 184.5-37 chr4 12994354 12994684 + 1 NA Intergenic MSTB1-int|LTR|ERVL-MaLR 489821 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 213.167-31 chr8 122357935 122358463 + 1 NA Intergenic L1PA15|LINE|L1 210445 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 187.667-23 chr17 69076830 69077182 + 1 NA Intergenic L1PA16|LINE|L1 -16079 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 391.5-4 chr18 7219363 7219839 + 1 NA Intergenic L1MA6|LINE|L1 -11503 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 345.333-3 chr17 48152002 48152531 + 1 NA intron (NM_001075099, intron 11 of 12) intron (NM_001075099, intron 11 of 12) 4245 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 279.333-15 chr20 57512480 57512989 + 1 NA exon (NM_001269049, exon 7 of 10) exon (NM_001269049, exon 7 of 10) 12133 NM_001269044 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 266.333-13 chr2 162967753 162968218 + 1 NA Intergenic Intergenic -129218 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 240.5-29 chr9 15096517 15096769 + 1 NA Intergenic Intergenic 103316 NR_003920 389705 Hs.431257 NR_003920 LOC389705 - histone PARylation factor 1 pseudogene pseudo 248.5-12 chr15 52165586 52165852 + 1 NA intron (NM_006578, intron 1 of 10) L1PA11|LINE|L1 14206 NM_006578 10681 Hs.155090 NM_006578 ENSG00000069966 GNB5 GB5|IDDCA|LADCI G protein subunit beta 5 protein-coding 208.5-15 chr16 61717969 61718312 + 1 NA intron (NM_001796, intron 9 of 11) intron (NM_001796, intron 9 of 11) 318298 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 213.667-17 chr17 29680824 29681104 + 1 NA intron (NM_033389, intron 5 of 14) intron (NM_033389, intron 5 of 14) -59541 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 228.667-34 chr4 88463618 88463973 + 1 NA intron (NM_016323, intron 5 of 22) intron (NM_016323, intron 5 of 22) 6676 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 258.667-9 chr14 80638210 80638692 + 1 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 303287 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 203.667-21 chr19 28779105 28779533 + 1 NA Intergenic L1P4a|LINE|L1 -51625 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 210.333-22 chr21 31034217 31034485 + 1 NA Intergenic Intergenic 4125 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 193.167-18 chr2 130934294 130934578 + 1 NA intron (NM_001367493, intron 3 of 13) L1MB5|LINE|L1 97522 NM_001367493 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 247.667-30 chr4 95093975 95094562 + 1 NA intron (NM_001256794, intron 1 of 10) intron (NM_001256794, intron 1 of 10) 2777 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 321.5-23 chr8 56093434 56094131 + 1 NA Intergenic Intergenic 19190 NR_149110 105375847 NR_149110 ENSG00000253603 CERNA3 CTA competing endogenous lncRNA 3 for miR-645 ncRNA 268.333-4 chr12 14725376 14725799 + 1 NA Intergenic L1MDa|LINE|L1 -28988 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 386.667-8 chr2 181465899 181466623 + 1 NA intron (NM_000885, intron 2 of 27) intron (NM_000885, intron 2 of 27) 8875 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 179.167-25 chr8 25072076 25072299 + 1 NA Intergenic MER110A|LTR|ERV1 -112502 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 212.667-18 chr18 8481552 8481923 + 1 NA Intergenic Intergenic -114703 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 344.833-5 chr20 35720929 35721540 + 1 NA intron (NR_040722, intron 10 of 17) AluSc|SINE|Alu 21026 NM_004902 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 268.833 chr1 24142488 24142818 + 1 NA intron (NM_021258, intron 1 of 6) intron (NM_021258, intron 1 of 6) 487 NM_021258 58985 Hs.110915 NM_021258 ENSG00000142677 IL22RA1 CRF2-9|IL22R|IL22R1 interleukin 22 receptor subunit alpha 1 protein-coding 280.833-15 chr6 50279270 50279602 + 1 NA Intergenic MER31B|LTR|ERV1 -229507 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 171.333-4 chr1 221727428 221727858 + 1 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 9257 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 186.667-47 chr4 113878480 113878739 + 1 NA Intergenic HERV35I-int|LTR|ERV1 101038 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 250.5-24 chr8 99128001 99128355 + 1 NA intron (NM_017890, intron 8 of 61) AluSx1|SINE|Alu 114912 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 199.333-7 chr1 230102683 230103153 + 1 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 35680 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 176.5-21 chr22 26127242 26127550 + 1 NA Intergenic Intergenic -42066 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 322.667-16 chr22 27267123 27267570 + 1 NA Intergenic Intergenic -42667 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 242.333-9 chr15 75801958 75802491 + 1 NA Intergenic Intergenic -39909 NR_036198 100423035 NR_036198 ENSG00000284385 MIR4313 - microRNA 4313 ncRNA 256.333-22 chr7 40147683 40148134 + 1 NA intron (NM_024728, intron 1 of 14) LTR10F|LTR|ERV1 12932 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 307.667 chr1 45303159 45303626 + 1 NA promoter-TSS (NR_024270) promoter-TSS (NR_024270) -518 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 197.167-15 chr17 66611148 66611535 + 1 NA intron (NM_002737, intron 3 of 16) L1MB7|LINE|L1 -175731 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 323.833-8 chr4 60301811 60302174 + 1 NA Intergenic MER44A|DNA|TcMar-Tigger -620627 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 242.667-19 chr21 28333582 28334223 + 1 NA Intergenic Intergenic -105235 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 298.167-14 chr8 118391777 118392124 + 1 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -229051 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 207.333-52 chr8 81977944 81978263 + 1 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -135817 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 183.667-7 chr10 29559264 29559624 + 1 NA intron (NM_001323599, intron 5 of 38) L1MC4|LINE|L1 -14347 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 278.667-29 chr8 38427460 38427844 + 1 NA intron (NM_023105, intron 4 of 16) L1ME4a|LINE|L1 40072 NM_001174065 2260 Hs.264887 NM_015850 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 254.833-8 chr14 72516150 72516447 + 1 NA promoter-TSS (NR_106994) promoter-TSS (NR_106994) -522 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 210.5-2 chr1 173658286 173658627 + 1 NA intron (NM_198493, intron 2 of 5) L1ME3Cz|LINE|L1 11395 NR_158771 339416 Hs.130054 NM_198493 ENSG00000183831 ANKRD45 CT117 ankyrin repeat domain 45 protein-coding 192.667-13 chr18 8124812 8125147 + 1 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 242055 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 187.5-19 chr16 3616789 3617164 + 1 NA Intergenic L1M4|LINE|L1 -5370 NM_032444 84464 Hs.143681 NM_032444 ENSG00000188827 SLX4 BTBD12|FANCP|MUS312 SLX4 structure-specific endonuclease subunit protein-coding 232.333-24 chr8 131436686 131437049 + 1 NA Intergenic L1MA4|LINE|L1 -395958 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 232.167-18 chr6 41917630 41918143 + 1 NA intron (NR_131160, intron 1 of 2) MER3|DNA|hAT-Charlie 3057 NM_001305456 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|SRB2|TRFP mediator complex subunit 20 protein-coding 238.5-30 chr8 37118505 37118930 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 334343 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 193.833-10 chr15 45509990 45510422 + 1 NA promoter-TSS (NR_022014) promoter-TSS (NR_022014) -930 NR_022014 283651 Hs.574240 NM_173609 HMGN2P46 C15orf21|D-PCa-2 high mobility group nucleosomal binding domain 2 pseudogene 46 pseudo 168.333-50 chr4 76764150 76764371 + 1 NA intron (NM_020859, intron 9 of 10) intron (NM_020859, intron 9 of 10) 133884 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 275.833-12 chr18 63844477 63844770 + 1 NA Intergenic MER20|DNA|hAT-Charlie -43082 NM_001143818 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 178.333-3 chr1 147255360 147255773 + 1 NA intron (NM_001348462, intron 3 of 22) intron (NM_001348462, intron 3 of 22) 12424 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 288.833 chr1 235900627 235901119 + 1 NA Intergenic Intergenic -17160 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 189.667-7 chr10 43679966 43680188 + 1 NA Intergenic MSTD|LTR|ERVL-MaLR -31196 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 312.667-14 chr3 130759639 130760404 + 1 NA Intergenic L1ME4c|LINE|L1 -13192 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 166.333-15 chr11 110224738 110224943 + 1 NA intron (NM_001260493, intron 14 of 15) intron (NM_001260493, intron 14 of 15) 71872 NM_001260496 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 222.333-26 chr5 164083261 164083559 + 1 NA Intergenic Intergenic 383992 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 229.333-9 chr12 39433966 39434341 + 1 NA intron (NM_001173464, intron 1 of 37) MSTD|LTR|ERVL-MaLR 8967 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 271.333-12 chr16 61052490 61052943 + 1 NA Intergenic Intergenic 3050 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 207.5-25 chr20 61531556 61531881 + 1 NA intron (NM_001252338, intron 1 of 14) intron (NM_001252338, intron 1 of 14) 32297 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 171.5-12 chr12 17258569 17258884 + 1 NA Intergenic Intergenic 269979 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 312.333-7 chr11 124152663 124153131 + 1 NA Intergenic Intergenic -32319 NM_001355213 26497 Hs.538726 NM_001355213 ENSG00000197309 OR10D3 HTPCRX09|OR10D3P olfactory receptor family 10 subfamily D member 3 (putative) protein-coding 171.167-2 chr1 77839967 77840436 + 1 NA intron (NM_198549, intron 7 of 15) intron (NM_198549, intron 7 of 15) -48314 NM_144573 91624 Hs.612385 NM_144573 ENSG00000162614 NEXN CMH20|NELIN nexilin F-actin binding protein protein-coding 213.667-32 chr3 168420092 168420416 + 1 NA intron (NR_021485, intron 3 of 15) MLT1A0|LTR|ERVL-MaLR -131600 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 201.333-42 chr5 57033647 57034264 + 1 NA Intergenic L1ME4a|LINE|L1 -81825 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 269.333-23 chr7 6528132 6528615 + 1 NA intron (NM_001145118, intron 2 of 21) MIR|SINE|MIR 23063 NM_001145118 392862 Hs.512174 NM_001145118 ENSG00000215045 GRID2IP DELPHILIN Grid2 interacting protein protein-coding 269.167-12 chr3 174397640 174398053 + 1 NA Intergenic Intergenic -461488 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 187.667-44 chr9 33286936 33287206 + 1 NA Intergenic LTR41|LTR|ERVL -3445 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 183.333-13 chr11 110194494 110194769 + 1 NA TTS (NM_001260492) TTS (NM_001260492) 101239 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 196.5-11 chr13 110387642 110388128 + 1 NA intron (NM_001846, intron 4 of 47) intron (NM_001846, intron 4 of 47) 46927 NR_107040 102465872 NR_107040 ENSG00000276765 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 202.5-17 chr12 128798749 128798976 + 1 NA intron (NM_145648, intron 7 of 7) intron (NM_145648, intron 7 of 7) 25096 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 185.5-26 chr3 49906527 49906729 + 1 NA Intergenic Intergenic -2755 NM_002447 4486 Hs.517973 NM_002447 ENSG00000164078 MST1R CD136|CDw136|NPCA3|PTK8|RON macrophage stimulating 1 receptor protein-coding 215.333-5 chr1 173329466 173329811 + 1 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -122307 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 206.5-17 chr15 52139837 52140225 + 1 NA intron (NM_006578, intron 5 of 10) intron (NM_006578, intron 5 of 10) -27256 NM_020396 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 236.667-2 chr1 97134066 97134452 + 1 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 38336 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 318.333-5 chr2 28180942 28181286 + 1 NA intron (NR_120504, intron 1 of 2) L1MA4A|LINE|L1 25847 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 203.667-49 chr7 82168897 82169347 + 1 NA intron (NM_000722, intron 4 of 38) intron (NM_000722, intron 4 of 38) 159945 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 229.834-5 chr5 90409340 90410182 + 1 NA promoter-TSS (NM_004365) promoter-TSS (NM_004365) 25 NM_004365 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 196.167-5 chr10 106296978 106297199 + 1 NA Intergenic Intergenic 156923 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 303.5-3 chr14 99682878 99683321 + 1 NA Intergenic Intergenic -1199 NM_006668 10858 Hs.25121 NM_006668 ENSG00000036530 CYP46A1 CP46|CYP46 cytochrome P450 family 46 subfamily A member 1 protein-coding 511.333-7 chr7 112602447 112603259 + 1 NA Intergenic L1MA9|LINE|L1 -15212 NR_110159 100996249 Hs.561749 NR_110159 LOC100996249 - uncharacterized LOC100996249 ncRNA 196.833-13 chr2 31729648 31729953 + 1 NA Intergenic L1MA4|LINE|L1 74180 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 249.833-10 chr18 66903580 66903852 + 1 NA Intergenic Intergenic -177868 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 167.667-26 chr22 20657048 20657268 + 1 NA Intergenic REP522|Satellite|telo -32397 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 204.333-25 chr20 15967881 15968316 + 1 NA intron (NM_001351663, intron 13 of 17) L1ME4a|LINE|L1 17784 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 213.667-19 chr18 73334878 73335286 + 1 NA intron (NR_038340, intron 2 of 2) intron (NR_038340, intron 2 of 2) 10141 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 229.333-12 chr12 131048918 131049261 + 1 NA intron (NM_198827, intron 13 of 24) MIR|SINE|MIR -55113 NR_131950 105755954 Hs.677534 NR_131950 ADGRD1-AS1 LACAT8 ADGRD1 antisense RNA 1 ncRNA 196.5-45 chr8 56210551 56210888 + 1 NA promoter-TSS (NM_001011667) promoter-TSS (NM_001011667) 554 NM_001114635 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 406.667 chr15 99619637 99620572 + 1 NA intron (NM_001352615, intron 3 of 12) intron (NM_001352615, intron 3 of 12) -12874 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 255.667-7 chr16 81317816 81318220 + 1 NA intron (NM_022041, intron 1 of 10) intron (NM_022041, intron 1 of 10) 3052 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 284.833-9 chr2 37890904 37891384 + 1 NA Intergenic Intergenic -15281 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 163.833-29 chr3 84077406 84077684 + 1 NA Intergenic Intergenic 792030 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 471.167-6 chr6 107848185 107849042 + 1 NA Intergenic Intergenic -24300 NM_001286408 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 269.333-3 chr12 130952634 130953188 + 1 NA promoter-TSS (NM_001330497) promoter-TSS (NM_001330497) -996 NM_001330497 283383 Hs.719239 NM_198827 ENSG00000111452 ADGRD1 GPR133|PGR25 adhesion G protein-coupled receptor D1 protein-coding 235.333-12 chr2 227207347 227207757 + 1 NA intron (NM_000091, intron 1 of 51) LTR36|LTR|ERV1 42987 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 189.5-7 chr12 87779226 87779448 + 1 NA intron (NR_149056, intron 1 of 3) L1M1|LINE|L1 5374 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 215.333-12 chr11 67387628 67388041 + 1 NA intron (NR_024469, intron 3 of 3) intron (NR_024469, intron 3 of 3) -4152 NM_004584 5883 Hs.655354 NM_004584 ENSG00000172613 RAD9A RAD9 RAD9 checkpoint clamp component A protein-coding 304.833-2 chr1 96563464 96563768 + 1 NA Intergenic Intergenic -157989 NM_001300988 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 208.333-34 chr6 56021340 56021666 + 1 NA Intergenic Intergenic 70159 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 268.5-26 chr8 134039495 134039982 + 1 NA Intergenic L1ME3A|LINE|L1 153242 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 199.5-45 chr8 121348589 121348875 + 1 NA Intergenic Intergenic -290614 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 272.667 chr1 35113537 35113908 + 1 NA exon (NM_001289088, exon 11 of 11) exon (NM_001289088, exon 11 of 11) 34337 NM_024772 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 221.667-42 chr6 137016651 137017030 + 1 NA intron (NM_001278722, intron 2 of 6) intron (NM_001278722, intron 2 of 6) -23609 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 195.667-30 chr3 124376517 124376853 + 1 NA intron (NM_001024660, intron 10 of 59) Tigger16b|DNA|TcMar-Tigger 2353 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 167.333-44 chr5 58733429 58733658 + 1 NA intron (NM_138453, intron 3 of 4) L4_B_Mam|LINE|RTE-X 150468 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 238.333-6 chr10 52985416 52985708 + 1 NA Intergenic Intergenic -213862 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 246.333-20 chr17 48023526 48023777 + 1 NA Intergenic CpG -9231 NR_162100 113218499 NR_162100 MIR10226 - microRNA 10226 ncRNA 176.667-58 chrX 51860640 51860914 + 1 NA intron (NM_001005332, intron 1 of 12) L2|LINE|L2 -32846 NM_006986 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 197.667-4 chr1 248100128 248100389 + 1 NA exon (NM_175911, exon 3 of 3) exon (NM_175911, exon 3 of 3) -21878 NR_002141 388762 Hs.528509 NR_002141 OR2M1P JCG10|OR2M1|OST037 olfactory receptor family 2 subfamily M member 1 pseudogene pseudo 202.5-54 chrX 79084030 79084288 + 1 NA Intergenic Intergenic -86813 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 380.5 chr1 169213969 169214729 + 1 NA intron (NR_104229, intron 10 of 12) intron (NR_104229, intron 10 of 12) 107659 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 189.333-39 chr7 48760202 48760561 + 1 NA Intergenic L2b|LINE|L2 -164166 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 185.333-3 chr10 4846302 4846567 + 1 NA intron (NM_001040177, intron 8 of 9) intron (NM_001040177, intron 8 of 9) 20227 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 192.5-4 chr10 63214879 63215323 + 1 NA exon (NM_001322252, exon 7 of 25) exon (NM_001322252, exon 7 of 25) 54122 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 167.833-24 chr19 36973188 36973366 + 1 NA intron (NM_001204839, intron 5 of 8) CpG 56945 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 235.333-29 chr9 86273247 86273703 + 1 NA intron (NM_030940, intron 2 of 3) L1ME4b|LINE|L1 9063 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|MMDS5|hIscA iron-sulfur cluster assembly 1 protein-coding 224.667-41 chr7 41649118 41649628 + 1 NA Intergenic Intergenic -44546 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 328.667-3 chr10 95419568 95419953 + 1 NA intron (NM_001034955, intron 6 of 30) intron (NM_001034955, intron 6 of 30) 21420 NM_001290298 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 289.667-25 chr8 127063203 127063657 + 1 NA Intergenic MIR|SINE|MIR -16444 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 265.5-13 chr2 25105629 25106147 + 1 NA intron (NM_014971, intron 4 of 22) intron (NM_014971, intron 4 of 22) 62692 NM_001319204 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 264.167-13 chr19 50136574 50136971 + 1 NA Intergenic AluSx|SINE|Alu 2465 NR_024231 100170224 Hs.446545 NR_024231 SNAR-B1 - small NF90 (ILF3) associated RNA B1 snRNA 173.5-47 chr5 16242257 16242525 + 1 NA Intergenic L1MA9|LINE|L1 62150 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 372.5-3 chr11 125490198 125490930 + 1 NA intron (NM_005103, intron 1 of 9) intron (NM_005103, intron 1 of 9) -4650 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 213.333-10 chr15 89845254 89845610 + 1 NA intron (NR_023361, intron 5 of 6) intron (NR_023361, intron 5 of 6) 5289 NR_049817 100847059 NR_049817 ENSG00000264966 MIR5094 - microRNA 5094 ncRNA 230.333-21 chr2 217457517 217457881 + 1 NA intron (NR_026597, intron 3 of 12) THE1C|LTR|ERVL-MaLR 174966 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 212.333-8 chr11 93895260 93895573 + 1 NA Intergenic Intergenic -44798 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 296.5-17 chr21 31186859 31187390 + 1 NA intron (NM_001353686, intron 13 of 27) intron (NM_001353686, intron 13 of 27) -26184 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 215.5-7 chr18 12648840 12649220 + 1 NA intron (NM_020148, intron 1 of 15) L1MC3|LINE|L1 7702 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 211.333-36 chr4 182935840 182936203 + 1 NA Intergenic Intergenic -18544 NM_001351748 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 294.5-21 chr5 19300255 19300739 + 1 NA Intergenic MIRb|SINE|MIR 585775 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 164.667-8 chr1 225403483 225403726 + 1 NA intron (NM_194442, intron 13 of 13) intron (NM_194442, intron 13 of 13) 24434 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 366.667-5 chr3 132416979 132417729 + 1 NA promoter-TSS (NM_015268) promoter-TSS (NM_015268) -148 NM_015268 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 197.5 chr1 24234905 24235298 + 1 NA Intergenic MER20|DNA|hAT-Charlie 34861 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 169.5-26 chr20 50463476 50463699 + 1 NA Intergenic AluSz|SINE|Alu -46734 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 193.667-7 chr1 162582045 162582368 + 1 NA intron (NM_003115, intron 5 of 9) L1M5|LINE|L1 20307 NM_001324113 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 164.5-60 chrX 23742029 23742209 + 1 NA intron (NM_001037171, intron 1 of 15) intron (NM_001037171, intron 1 of 15) 1157 NM_001330259 23597 Hs.298885 NM_001033583 ENSG00000123130 ACOT9 ACATE2|CGI-16|MT-ACT48|MTACT48 acyl-CoA thioesterase 9 protein-coding 200.667-51 chr7 80721807 80722013 + 1 NA Intergenic Intergenic 75257 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 266.333-20 chr9 74247008 74247490 + 1 NA Intergenic L1MA8|LINE|L1 -124282 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 211.333-39 chr5 76921495 76921825 + 1 NA TTS (NM_130772) TTS (NM_130772) -31385 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 169.667-61 chr8 106139021 106139202 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -78608 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 182.333-6 chr12 85978596 85979079 + 1 NA non-coding (NR_147093, exon 5 of 5) non-coding (NR_147093, exon 5 of 5) 104542 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 264.833-16 chr2 191171849 191172290 + 1 NA Intergenic Intergenic -20473 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 294.333-13 chr4 89869271 89869776 + 1 NA Intergenic Intergenic -9988 NM_001371403 243.667-39 chr9 105348209 105348606 + 1 NA exon (NM_001286730, exon 5 of 16) exon (NM_001286730, exon 5 of 16) -99627 NM_001287191 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 191.667-8 chr11 106538194 106538557 + 1 NA Intergenic HAL1|LINE|L1 286968 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 202.833-24 chr5 78646692 78647078 + 1 NA intron (NM_005779, intron 1 of 4) intron (NM_005779, intron 1 of 4) 1887 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 289.667-16 chr21 26848231 26848646 + 1 NA Intergenic Intergenic -3029 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 317.5-16 chr8 57802458 57802968 + 1 NA Intergenic Intergenic 56564 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 254.833-18 chr5 116072444 116072797 + 1 NA Intergenic Intergenic -12405 NR_146218 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 196.667-14 chr13 34077391 34077605 + 1 NA Intergenic Intergenic 259349 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 204.5-17 chr2 27264918 27265129 + 1 NA intron (NM_001318949, intron 1 of 8) CpG-15874 -1976 NM_003459 7781 Hs.467981 NM_003459 ENSG00000115194 SLC30A3 ZNT3 solute carrier family 30 member 3 protein-coding 239.833-13 chr5 131526235 131526658 + 1 NA intron (NM_016340, intron 6 of 27) MIR|SINE|MIR 108783 NM_016340 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 253.333-25 chr4 63481019 63481343 + 1 NA Intergenic Intergenic 928269 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 166.667-2 chr1 210583794 210584082 + 1 NA intron (NM_001122834, intron 9 of 11) intron (NM_001122834, intron 9 of 11) 254572 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 285.667-23 chrX 47667110 47667439 + 1 NA Intergenic L1MA3|LINE|L1 -8094 NR_045559 8409 Hs.172791 NM_004182 ENSG00000126756 UXT ART-27|STAP1 ubiquitously expressed prefoldin like chaperone protein-coding 273.667-3 chr10 34614545 34614857 + 1 NA intron (NM_001184789, intron 2 of 22) L1MA5|LINE|L1 200595 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 247.5 chr10 52137693 52138331 + 1 NA intron (NM_001098512, intron 8 of 17) intron (NM_001098512, intron 8 of 17) 176116 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 180.333-32 chr2 214736584 214736831 + 1 NA intron (NM_001282549, intron 3 of 4) intron (NM_001282549, intron 3 of 4) 72976 NM_000465 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 227.333-3 chr1 92934013 92934398 + 1 NA intron (NM_001006605, intron 1 of 4) intron (NM_001006605, intron 1 of 4) 27257 NM_001006605 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 200.667-4 chr10 6639063 6639477 + 1 NA non-coding (NR_120634, exon 6 of 6) non-coding (NR_120634, exon 6 of 6) 4200 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 172.333-43 chr5 4491919 4492231 + 1 NA Intergenic Intergenic -281406 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 245.167-10 chr2 37780965 37781236 + 1 NA Intergenic Intergenic 48611 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 180.667-39 chr5 150398811 150399137 + 1 NA intron (NM_001135244, intron 24 of 25) intron (NM_001135244, intron 24 of 25) 13782 NR_157074 972 Hs.436568 NM_004355 ENSG00000019582 CD74 DHLAG|HLADG|II|Ia-GAMMA|p33 CD74 molecule protein-coding 186.667-29 chr16 51799139 51799528 + 1 NA Intergenic Intergenic 36814 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 202.333-21 chr2 236623437 236623797 + 1 NA Intergenic Intergenic 53792 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 187.833-4 chr10 53733567 53734119 + 1 NA Intergenic L1MEc|LINE|L1 -752387 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 270.5-15 chr18 9874727 9875246 + 1 NA Intergenic Tigger3c|DNA|TcMar-Tigger -10987 NM_001098529 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 234.5-7 chr10 12725350 12725792 + 1 NA promoter-TSS (NR_031752) promoter-TSS (NR_031752) -218 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 197.5-24 chr3 40828972 40829190 + 1 NA Intergenic Intergenic 304121 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 190.333-20 chr17 72602862 72603272 + 1 NA intron (NR_033876, intron 4 of 4) intron (NR_033876, intron 4 of 4) -10263 NR_137281 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 180.5-30 chr4 105091745 105091927 + 1 NA Intergenic Intergenic -54039 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 325.667-8 chr3 193508896 193509288 + 1 NA intron (NM_032279, intron 2 of 29) intron (NM_032279, intron 2 of 29) -44121 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 247.5-34 chr3 188890764 188891063 + 1 NA TTS (NM_001167671) TTS (NM_001167671) 56726 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 274.333-25 chr8 123984565 123984973 + 1 NA non-coding (NR_040044, exon 6 of 6) non-coding (NR_040044, exon 6 of 6) 56013 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 224.167-28 chr7 38863051 38863592 + 1 NA intron (NM_014396, intron 3 of 28) intron (NM_014396, intron 3 of 28) 45870 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 352.333-5 chr12 82752320 82752980 + 1 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 65495 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 181.833-17 chr3 94294612 94294992 + 1 NA Intergenic PRIMA4-int|LTR|ERV1 231741 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 198.333-50 chrX 17121622 17122080 + 1 NA intron (NM_001080975, intron 14 of 17) AluSx|SINE|Alu 175193 NM_001080975 9185 Hs.186810 NM_004726 ENSG00000169891 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 305.5-16 chr5 178626359 178627055 + 1 NA intron (NM_020666, intron 1 of 12) CpG 343 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 164.667-53 chr8 99043540 99043793 + 1 NA intron (NM_017890, intron 3 of 61) L2|LINE|L2 30400 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 168.333-26 chr16 20904136 20904365 + 1 NA intron (NR_161432, intron 2 of 3) intron (NR_161432, intron 2 of 3) 2988 NR_161432 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 216.5-33 chr3 110813653 110814044 + 1 NA Intergenic Intergenic 256111 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 223.167-6 chr15 70973912 70974428 + 1 NA intron (NM_017691, intron 9 of 15) intron (NM_017691, intron 9 of 15) 81727 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 207.333-25 chr20 45969898 45970174 + 1 NA intron (NM_022095, intron 2 of 27) L2b|LINE|L2 2167 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 207.833-20 chr5 50966966 50967309 + 1 NA Intergenic Intergenic 3050 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 403.333 chr13 108508059 108508881 + 1 NA Intergenic L1MB2|LINE|L1 -87435 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 244.167-25 chr6 17167374 17167794 + 1 NA Intergenic Intergenic 65326 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 243.333-8 chr11 61792625 61792902 + 1 NA promoter-TSS (NM_004111) promoter-TSS (NM_004111) -148 NM_004111 2237 Hs.409065 NM_004111 ENSG00000168496 FEN1 FEN-1|MF1|RAD2 flap structure-specific endonuclease 1 protein-coding 333.667-15 chr9 101978438 101978835 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -240056 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 206.667-12 chr12 111841682 111842021 + 1 NA promoter-TSS (NR_152608) promoter-TSS (NR_152608) 79 NR_152607 51275 Hs.333120 NR_015404 ENSG00000234608 MAPKAPK5-AS1 C12orf47 MAPKAPK5 antisense RNA 1 ncRNA 191.333-10 chr11 115205677 115206004 + 1 NA intron (NM_001301045, intron 7 of 10) intron (NM_001301045, intron 7 of 10) -127737 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 170.167-16 chr15 65001984 65002209 + 1 NA 3' UTR (NM_139242, exon 9 of 9) 3' UTR (NM_139242, exon 9 of 9) -12182 NM_016630 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 193.667-52 chr8 107526683 107527021 + 1 NA Intergenic L2b|LINE|L2 -28934 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 166.5-19 chr17 66865130 66865425 + 1 NA intron (NM_145811, intron 1 of 5) intron (NM_145811, intron 1 of 5) 30160 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 200.5-42 chr8 104083419 104083872 + 1 NA intron (NR_145711, intron 17 of 21) intron (NR_145711, intron 17 of 21) -139690 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 205.5-34 chr7 17641666 17641986 + 1 NA Intergenic Intergenic -82917 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 284.667-9 chr3 14938173 14938553 + 1 NA Intergenic Intergenic 9142 NR_046254 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 249.667-20 chr20 63056362 63056798 + 1 NA intron (NR_033370, intron 1 of 4) intron (NR_033370, intron 1 of 4) 18569 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 252.5-2 chr1 158418404 158418708 + 1 NA Intergenic Intergenic 2310 NM_001004476 391107 Hs.626815 NM_001004476 ENSG00000180708 OR10K2 OR1-4 olfactory receptor family 10 subfamily K member 2 protein-coding 210.5-33 chr6 72457080 72457412 + 1 NA Intergenic L1MA6|LINE|L1 90500 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 186.833-3 chr1 232867393 232867743 + 1 NA Intergenic L1ME4a|LINE|L1 62676 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 242.667-16 chr2 96665112 96665379 + 1 NA intron (NM_001293083, intron 14 of 52) intron (NM_001293083, intron 14 of 52) 22481 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 335.5-3 chr11 100888860 100889533 + 1 NA intron (NM_001367945, intron 6 of 25) MIRc|SINE|MIR -45078 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 253.667-4 chr1 242119719 242120165 + 1 NA intron (NM_001320272, intron 7 of 10) L1MB7|LINE|L1 -120844 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 237.5-41 chr8 81718077 81718538 + 1 NA intron (NR_033195, intron 1 of 6) intron (NR_033195, intron 1 of 6) 2993 NM_024699 79752 Hs.655453 NM_024699 ENSG00000104231 ZFAND1 - zinc finger AN1-type containing 1 protein-coding 175.667-23 chr18 948709 949236 + 1 NA Intergenic L1M2|LINE|L1 -20979 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 165.833-21 chr2 7302351 7302880 + 1 NA Intergenic Intergenic -118646 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 179.333-21 chr18 11310730 11310962 + 1 NA Intergenic Intergenic -143632 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 243.667-24 chr2 112639071 112639393 + 1 NA Intergenic AluJb|SINE|Alu 4948 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 266.667-15 chr4 52556160 52556856 + 1 NA Intergenic Intergenic 100031 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 227.333-38 chr8 87395568 87395964 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR 478249 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 273.333-14 chr4 67743481 67743892 + 1 NA intron (NM_001012763, intron 2 of 2) intron (NM_001012763, intron 2 of 2) 12400 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 241.667-29 chr8 80845459 80846030 + 1 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 28724 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 220.333-11 chr19 35737418 35737746 + 1 NA intron (NM_014727, intron 33 of 36) intron (NM_014727, intron 33 of 36) 4870 NR_144339 79713 Hs.352548 NM_024660 ENSG00000126246 IGFLR1 TMEM149 IGF like family receptor 1 protein-coding 186.333-28 chr20 62601602 62601957 + 1 NA Intergenic L1M5|LINE|L1 36867 NR_029676 406923 NR_029676 ENSG00000284508 MIR133A2 MIRN133A2|mir-133a-2 microRNA 133a-2 ncRNA 181.833-2 chr11 17735731 17735988 + 1 NA promoter-TSS (NM_004976) promoter-TSS (NM_004976) -89 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 272.167-11 chr2 70303161 70303682 + 1 NA Intergenic FLAM_C|SINE|Alu -1354 NM_032822 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 196.333-27 chr2 204694224 204694689 + 1 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 148981 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 207.667-27 chr22 27890249 27890603 + 1 NA intron (NM_001284278, intron 7 of 11) intron (NM_001284278, intron 7 of 11) 28788 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 273.667 chr1 26230544 26230993 + 1 NA TTS (NR_110698) TTS (NR_110698) -3432 NM_022778 64793 Hs.63795 NM_022778 ENSG00000130695 CEP85 CCDC21 centrosomal protein 85 protein-coding 234.333-41 chrX 42735383 42735817 + 1 NA Intergenic L1ME1|LINE|L1 42563 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 250.167-13 chr4 86105941 86106356 + 1 NA intron (NM_001363657, intron 5 of 13) intron (NM_001363657, intron 5 of 13) -13658 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 312.5-9 chr18 7037213 7037799 + 1 NA intron (NM_005559, intron 12 of 62) intron (NM_005559, intron 12 of 62) 80291 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 268.5-24 chr8 66519836 66520231 + 1 NA Intergenic Intergenic 26467 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 380.667-4 chr3 162847218 162847681 + 1 NA Intergenic Intergenic 455852 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 208.833-18 chr21 32139139 32139613 + 1 NA Intergenic Intergenic -53081 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 300.5-11 chr18 12339864 12340294 + 1 NA intron (NM_006796, intron 15 of 16) intron (NM_006796, intron 15 of 16) 31838 NM_001303526 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 164.5-41 chr5 18699706 18700015 + 1 NA Intergenic Intergenic 892586 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 263.5-14 chr18 11554358 11554869 + 1 NA Intergenic Tigger7|DNA|TcMar-Tigger -54945 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 301.667-12 chr3 97568912 97569273 + 1 NA intron (NM_001080448, intron 11 of 17) MER31A|LTR|ERV1 129485 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 269.5-26 chr8 128128600 128128938 + 1 NA Intergenic L1M4a1|LINE|L1 -21347 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 217.5-25 chr7 41539683 41539948 + 1 NA Intergenic Intergenic -154104 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 273.333-3 chr11 74975852 74976545 + 1 NA intron (NM_014752, intron 4 of 4) L2c|LINE|L2 -12446 NM_001367860 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 415.167-4 chr8 140645625 140646196 + 1 NA Intergenic Charlie2a|DNA|hAT-Charlie -10277 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 306.5 chr1 84432932 84433461 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 24845 NM_058248 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 170.333-34 chr21 30592948 30593171 + 1 NA TTS (NM_181605) TTS (NM_181605) 619 NM_181605 337968 Hs.553691 NM_181605 ENSG00000212938 KRTAP6-3 KAP6.3 keratin associated protein 6-3 protein-coding 357.333-16 chr9 28281011 28281596 + 1 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 438002 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 205.333-17 chr18 69467528 69468088 + 1 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) -2123 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 192.333-42 chr5 101539087 101539444 + 1 NA Intergenic L1PA15|LINE|L1 -635983 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 259.5-14 chr2 51064814 51065251 + 1 NA intron (NR_135237, intron 2 of 10) MIR|SINE|MIR 32431 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 245.333-10 chr14 58299920 58300463 + 1 NA intron (NM_002892, intron 2 of 23) intron (NM_002892, intron 2 of 23) 1636 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 164.167-32 chr22 43015826 43016157 + 1 NA promoter-TSS (NM_001349971) promoter-TSS (NM_001349971) -815 NM_001349971 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 336.333-3 chr10 99396935 99397646 + 1 NA 3' UTR (NM_002079, exon 9 of 9) 3' UTR (NM_002079, exon 9 of 9) 33334 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 224.333 chr1 39642562 39642924 + 1 NA Intergenic MER20|DNA|hAT-Charlie -3100 NM_014571 26508 Hs.472566 NM_014571 ENSG00000163909 HEYL HESR3|HEY3|HRT3|bHLHb33 hes related family bHLH transcription factor with YRPW motif like protein-coding 441.333-2 chr5 9532377 9533065 + 1 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 13354 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 196.333-24 chr2 119728315 119728535 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -31497 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 203.5-8 chr11 79658575 79658980 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR -217747 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 176.333-6 chr11 3858830 3859267 + 1 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 2986 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 206.667-39 chr4 34479404 34479741 + 1 NA Intergenic L1PA7|LINE|L1 -209825 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 181.333-35 chr5 76177467 76177753 + 1 NA intron (NM_014979, intron 2 of 12) MER44A|DNA|TcMar-Tigger 94227 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 205.333-13 chr14 67830043 67830350 + 1 NA intron (NM_133509, intron 3 of 10) L2a|LINE|L2 6604 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 168.833-25 chr9 100930920 100931088 + 1 NA Intergenic Intergenic -97723 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 260.667-8 chr10 118553023 118553388 + 1 NA Intergenic L1ME3|LINE|L1 42443 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 196.167-12 chr14 66194147 66194406 + 1 NA Intergenic AluJr4|SINE|Alu -292095 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 233.333-21 chr22 27045073 27045579 + 1 NA Intergenic Intergenic 15192 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 355.333-8 chr6 169711558 169712102 + 1 NA intron (NM_018288, intron 8 of 11) MamSINE1|SINE|tRNA-RTE 9704 NM_001317342 387263 Hs.591375 NM_001029863 ENSG00000185127 C6orf120 - chromosome 6 open reading frame 120 protein-coding 305.333-11 chr9 104324749 104325089 + 1 NA Intergenic Intergenic 54690 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 286.667-18 chr4 92579820 92580252 + 1 NA intron (NM_001286838, intron 1 of 14) (TA)n|Simple_repeat|Simple_repeat 275637 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 371.667-4 chr17 68666662 68667192 + 1 NA intron (NR_110825, intron 2 of 4) L1PA14|LINE|L1 38773 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 236.333-14 chr2 9631621 9632106 + 1 NA promoter-TSS (NM_006826) promoter-TSS (NM_006826) -866 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 344.333 chr1 68761154 68761664 + 1 NA Intergenic L1PB1|LINE|L1 -264327 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 216.833-10 chr17 40620046 40620597 + 1 NA Intergenic Intergenic 27497 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 203.5 chr1 31493685 31494025 + 1 NA Intergenic MIRb|SINE|MIR -6230 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LDC1P LINC01225 leucine decarboxylase 1, pseudogene pseudo 194.667-3 chr1 51162738 51162932 + 1 NA Intergenic AluSx3|SINE|Alu 60607 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 227.667-31 chr3 64054626 64054948 + 1 NA Intergenic LTR85b|LTR|Gypsy? -13177 NR_045697 100652759 Hs.731187 NR_045697 ENSG00000241111 PRICKLE2-AS1 - PRICKLE2 antisense RNA 1 ncRNA 238.333-13 chr12 14770868 14771361 + 1 NA promoter-TSS (NM_175054) promoter-TSS (NM_175054) 17 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 253.667 chr1 31129394 31129813 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -63886 NM_001020658 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 172.333-45 chr5 59410630 59410996 + 1 NA intron (NM_001165899, intron 3 of 16) L1MA3|LINE|L1 -53843 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 174.167-17 chr18 69188969 69189208 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -211800 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 170.167-26 chr20 42082600 42082840 + 1 NA intron (NM_133170, intron 30 of 31) intron (NM_133170, intron 30 of 31) -464343 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 192.167-36 chr8 18208446 18208665 + 1 NA intron (NM_001160179, intron 2 of 4) L1M1|LINE|L1 -1548 NM_001160173 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 175.333-10 chr14 22436880 22437231 + 1 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) -4302 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 163.333-39 chr3 97164154 97164402 + 1 NA intron (NM_001080448, intron 3 of 17) ERVL-B4-int|LTR|ERVL -275329 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 223.333-42 chr7 27600993 27601483 + 1 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -14736 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 176.167-2 chr1 30141965 30142474 + 1 NA Intergenic L1M4|LINE|L1 -104607 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 235.667-26 chr7 7359618 7360045 + 1 NA intron (NM_001037763, intron 34 of 34) intron (NM_001037763, intron 34 of 34) 104677 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 252.833-5 chr11 35615691 35616081 + 1 NA Intergenic Intergenic -2574 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 219.333-16 chr15 96334746 96335211 + 1 NA intron (NM_021005, intron 2 of 2) intron (NM_021005, intron 2 of 2) 1213 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 181.667-2 chr1 33936907 33937151 + 1 NA intron (NM_052896, intron 3 of 69) MIR|SINE|MIR 68073 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 242.333-19 chr4 100421189 100421576 + 1 NA intron (NM_001159694, intron 6 of 10) intron (NM_001159694, intron 6 of 10) -26135 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 229.5-30 chr4 111343985 111344441 + 1 NA Intergenic Intergenic -483566 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 247.167-8 chr17 71424435 71424747 + 1 NA Intergenic Intergenic -222412 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 227.333-28 chr5 34608616 34608938 + 1 NA Intergenic Intergenic -47551 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 323.333-19 chr8 124457802 124458174 + 1 NA Intergenic L1MB7|LINE|L1 7168 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 249.5-16 chr4 52721929 52722386 + 1 NA Intergenic CpG 8908 NR_003016 677810 Hs.635034 NR_003016 ENSG00000212588 SNORA26 HBI-6 small nucleolar RNA, H/ACA box 26 snoRNA 177.5-17 chr13 79387351 79387643 + 1 NA intron (NM_022118, intron 1 of 20) MIRc|SINE|MIR 18724 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 267.333 chr1 74167956 74168268 + 1 NA intron (NM_001105659, intron 3 of 7) L1MD1|LINE|L1 30064 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 188.5-16 chr14 63911664 63912064 + 1 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 58860 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 296.667 chr1 218351314 218351810 + 1 NA intron (NR_138148, intron 1 of 6) intron (NR_138148, intron 1 of 6) -5884 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 203.5-29 chr3 108406523 108406842 + 1 NA intron (NM_014981, intron 33 of 41) intron (NM_014981, intron 33 of 41) 94897 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 236.5-19 chr2 32585762 32586093 + 1 NA intron (NM_016252, intron 66 of 73) intron (NM_016252, intron 66 of 73) -11109 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 190.5-31 chr3 144247246 144247467 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 274275 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 189.5-39 chr8 24905880 24906072 + 1 NA Intergenic Intergenic -7785 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 169.333-8 chr1 223411537 223411898 + 1 NA Intergenic Intergenic 18302 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 325.333-12 chr4 57045139 57045537 + 1 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -64424 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 222.667-23 chr2 44861885 44862264 + 1 NA Intergenic L1MC1|LINE|L1 76814 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 287.667-18 chr21 17003711 17004237 + 1 NA Intergenic Intergenic 413737 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 224.667-10 chr11 32231705 32232127 + 1 NA Intergenic Intergenic -88004 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 187.167-3 chr1 65699328 65699750 + 1 NA Intergenic L1M5|LINE|L1 -92971 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 241.333-8 chr11 82260072 82260376 + 1 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 143689 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 282.667-21 chr3 4466883 4467292 + 1 NA exon (NM_182760, exon 1 of 9) exon (NM_182760, exon 1 of 9) 182 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 408.834-4 chr8 66177067 66177756 + 1 NA exon (NM_000756, exon 2 of 2) exon (NM_000756, exon 2 of 2) 1053 NM_000756 1392 Hs.75294 NM_000756 ENSG00000147571 CRH CRF|CRH1 corticotropin releasing hormone protein-coding 229.667-2 chr1 44676908 44677550 + 1 NA intron (NM_001145636, intron 1 of 11) L2|LINE|L2 2515 NM_001145636 339541 Hs.173679 NM_001004307 ENSG00000198520 ARMH1 C1orf228|NCRNA00082|p40 armadillo like helical domain containing 1 protein-coding 271.333-10 chr15 39591507 39591813 + 1 NA intron (NM_003246, intron 16 of 21) intron (NM_003246, intron 16 of 21) 10581 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 282.5-21 chr9 83538680 83539138 + 1 NA promoter-TSS (NM_001244959) promoter-TSS (NM_001244959) -508 NM_174938 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 196.333-10 chr12 7272990 7273212 + 1 NA Intergenic MIRb|SINE|MIR -31231 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 257.5-4 chr1 214195562 214196024 + 1 NA Intergenic MER67A|LTR|ERV1 -85366 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 173.667-7 chr10 86275254 86275546 + 1 NA intron (NM_017551, intron 2 of 15) L1M4|LINE|L1 -10612 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 258.5-30 chr8 42176852 42177299 + 1 NA intron (NM_001319189, intron 11 of 11) AluSx|SINE|Alu 24012 NM_006803 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 176.667-22 chr19 13729676 13730135 + 1 NA Intergenic MER95|LTR|ERV1 -1847 NM_001320565 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 316.667-5 chr2 23545991 23546423 + 1 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 161028 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 226.333-25 chr6 61876390 61876812 + 1 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 302471 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 196.667-13 chr12 59814099 59814610 + 1 NA Intergenic Intergenic 124984 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 215.667-2 chr1 182784001 182784364 + 1 NA Intergenic Intergenic -5267 NM_030769 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 228.667-20 chr2 70328786 70329148 + 1 NA Intergenic Intergenic -26900 NM_032822 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 214.667-20 chr2 111226029 111226387 + 1 NA intron (NR_015395, intron 5 of 6) intron (NR_015395, intron 5 of 6) 94878 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 226.667-2 chr1 146032403 146032752 + 1 NA Intergenic AluSx1|SINE|Alu -10755 NM_213653 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 182.667-24 chr19 48357972 48358206 + 1 NA intron (NR_130317, intron 1 of 5) intron (NR_130317, intron 1 of 5) 5851 NM_001303540 55260 Hs.351335 NM_018273 ENSG00000161558 TMEM143 - transmembrane protein 143 protein-coding 293.333-19 chr8 123394525 123395073 + 1 NA intron (NM_014109, intron 1 of 27) intron (NM_014109, intron 1 of 27) 1648 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 316.167-2 chr1 154973890 154974391 + 1 NA promoter-TSS (NM_001826) promoter-TSS (NM_001826) 236 NM_001202859 6464 Hs.433795 NM_003029 ENSG00000160691 SHC1 SHC|SHCA SHC adaptor protein 1 protein-coding 224.5-5 chr11 99387776 99388165 + 1 NA intron (NM_001243271, intron 2 of 20) MER5B|DNA|hAT-Charlie -168175 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 253.667-26 chr3 38634213 38634478 + 1 NA intron (NM_198056, intron 1 of 27) intron (NM_198056, intron 1 of 27) 15327 NM_198056 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 277.833-7 chr14 78838148 78838691 + 1 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -361563 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 237.333 chr1 161245699 161246002 + 1 NA Intergenic Intergenic -7640 NM_001077482 9970 Hs.349642 NM_005122 ENSG00000143257 NR1I3 CAR|CAR1|MB67 nuclear receptor subfamily 1 group I member 3 protein-coding 256.333-16 chr5 18412582 18412995 + 1 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 605514 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 249.333-22 chr4 7844466 7844740 + 1 NA intron (NM_198595, intron 4 of 16) L2b|LINE|L2 27705 NM_001371090 209.5-37 chr9 28165475 28165852 + 1 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 553642 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 209.5-24 chr21 33214927 33215305 + 1 NA Intergenic Intergenic -14779 NM_001289128 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 269.5-22 chr5 132513595 132514163 + 1 NA Intergenic L1M4|LINE|L1 -23106 NR_149068 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 234.167-2 chr1 225767136 225767739 + 1 NA Intergenic Intergenic -10376 NM_001130440 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 230.167 chr1 9378101 9378545 + 1 NA Intergenic Intergenic 50593 NR_104623 100506022 Hs.131775 NR_104622 ENSG00000284693 LINC02606 - long intergenic non-protein coding RNA 2606 ncRNA 192.833-14 chr2 538569 538855 + 1 NA Intergenic L1MB7|LINE|L1 -7093 NR_146470 101927362 Hs.385749 NR_146470 ENSG00000225942 LINC01875 - long intergenic non-protein coding RNA 1875 ncRNA 213.5-11 chr16 59530138 59530533 + 1 NA Intergenic Intergenic 224856 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 328.5-9 chr8 130017271 130017799 + 1 NA promoter-TSS (NM_001353253) promoter-TSS (NM_001353253) -406 NM_001353270 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 240.667-4 chr1 232364544 232364968 + 1 NA Intergenic L1MB8|LINE|L1 150852 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 169.333-16 chr11 35362373 35362688 + 1 NA intron (NM_001195728, intron 1 of 11) MIR|SINE|MIR 57028 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 216.5-26 chr2 175571143 175571392 + 1 NA Intergenic Intergenic -389557 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 185.333-13 chr12 96204454 96204671 + 1 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 10187 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 243.5-22 chr3 170824717 170825029 + 1 NA Intergenic L1ME4a|LINE|L1 45322 NR_135259 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 234.833-4 chr11 44717472 44717797 + 1 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -9328 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 168.333-27 chr19 31028770 31028950 + 1 NA Intergenic L1ME1|LINE|L1 -138650 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 175.333-27 chr2 49678247 49678556 + 1 NA Intergenic LTR50|LTR|ERVL 295802 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 188.5-34 chr5 106259000 106259204 + 1 NA Intergenic Intergenic 751912 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 169.5-13 chr12 18329664 18329950 + 1 NA intron (NM_001288774, intron 8 of 32) L1ME3B|LINE|L1 68267 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 231.333-30 chr6 44125991 44126290 + 1 NA promoter-TSS (NM_001318792) promoter-TSS (NM_001318792) 127 NM_001318770 64928 Hs.311190 NM_032111 ENSG00000180992 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 298.333-17 chr8 101227194 101227559 + 1 NA Intergenic L1ME2z|LINE|L1 -21312 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 191.5-16 chr15 42459420 42459683 + 1 NA intron (NM_001366845, intron 3 of 21) intron (NM_001366845, intron 3 of 21) -1984 NM_022473 64397 Hs.511143 NM_022473 ENSG00000103994 ZNF106 SH3BP3|ZFP106|ZNF474 zinc finger protein 106 protein-coding 166.333-36 chr22 46167486 46167692 + 1 NA intron (NM_001001928, intron 2 of 7) AluJb|SINE|Alu 16794 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 218.667-14 chr18 4972600 4972941 + 1 NA Intergenic L1MA4|LINE|L1 -108412 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 211.5-46 chr7 140133942 140134420 + 1 NA intron (NM_030647, intron 2 of 19) intron (NM_030647, intron 2 of 19) 42802 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 222.667-21 chr18 22141796 22142300 + 1 NA Intergenic AluJr4|SINE|Alu 26920 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 297.333-14 chr5 66957492 66957935 + 1 NA intron (NM_015183, intron 3 of 27) intron (NM_015183, intron 3 of 27) -1360 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 198.667-14 chr15 65724918 65725229 + 1 NA intron (NM_005848, intron 11 of 31) intron (NM_005848, intron 11 of 31) -5741 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 297.5-21 chr7 22083418 22083895 + 1 NA Intergenic Intergenic 110089 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 183.167-21 chr22 24883266 24883644 + 1 NA intron (NM_001098498, intron 14 of 23) intron (NM_001098498, intron 14 of 23) 63240 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 241.333-7 chr11 62881394 62881749 + 1 NA promoter-TSS (NR_037193) promoter-TSS (NR_037193) -128 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 250.667-35 chr6 40328241 40328810 + 1 NA Intergenic Intergenic 27481 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 168.333-8 chr10 34000719 34000961 + 1 NA Intergenic AluSx1|SINE|Alu -228160 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 246.5-13 chr15 94899218 94899660 + 1 NA Intergenic Intergenic 44076 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 207.667-14 chr14 86062357 86062579 + 1 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 127790 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 309.333-2 chr1 219566141 219566571 + 1 NA Intergenic Tigger15a|DNA|TcMar-Tigger -9032 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 336.833-8 chr9 22243822 22244376 + 1 NA Intergenic MIR|SINE|MIR -202725 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 176.5-20 chr21 32229156 32229500 + 1 NA Intergenic Intergenic 49721 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 212.667-32 chr3 63374558 63374847 + 1 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) -68610 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 253.333-9 chr14 61421252 61421646 + 1 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 100006 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 165.667-10 chr10 94598417 94598787 + 1 NA intron (NM_001289075, intron 20 of 20) intron (NM_001289075, intron 20 of 20) 52814 NM_018063 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 203.5-46 chr9 128299368 128299736 + 1 NA Intergenic AluSq2|SINE|Alu 22666 NM_001329862 26995 Hs.632685 NM_015679 ENSG00000167112 TRUB2 CLONE24922 TruB pseudouridine synthase family member 2 protein-coding 261.667-3 chr1 95792129 95792579 + 1 NA Intergenic Intergenic -199714 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 203.333-4 chr1 115069948 115070318 + 1 NA intron (NM_005725, intron 2 of 7) intron (NM_005725, intron 2 of 7) 19367 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 208.5-14 chr16 31428845 31429308 + 1 NA promoter-TSS (NM_005205) promoter-TSS (NM_005205) -716 NM_005205 1339 Hs.250760 NM_005205 ENSG00000156885 COX6A2 COX6AH|COXVIAH cytochrome c oxidase subunit 6A2 protein-coding 262.167-13 chr8 10332648 10333121 + 1 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -141681 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 197.833-2 chr1 105964337 105964592 + 1 NA intron (NR_146609, intron 5 of 5) intron (NR_146609, intron 5 of 5) 63789 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 228.667-26 chr20 17432638 17432995 + 1 NA intron (NM_002594, intron 7 of 11) intron (NM_002594, intron 7 of 11) 98563 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 173.167-11 chr12 75511688 75512029 + 1 NA promoter-TSS (NM_007043) promoter-TSS (NM_007043) -249 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 189.667-10 chr11 35622036 35622280 + 1 NA Intergenic Intergenic 3698 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 188.5-36 chr5 125580756 125580982 + 1 NA intron (NR_109887, intron 3 of 3) MER1A|DNA|hAT-Charlie 87608 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 184.833-18 chr2 180823445 180823645 + 1 NA intron (NR_104324, intron 3 of 4) HAL1|LINE|L1 131441 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 242.5-16 chr15 100863576 100863889 + 1 NA intron (NR_160709, intron 1 of 3) intron (NR_160709, intron 1 of 3) 1889 NR_160708 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 278.333-18 chr3 176430083 176430708 + 1 NA Intergenic Intergenic -84708 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 186.333-4 chr1 218996575 218996783 + 1 NA intron (NR_031644, intron 6 of 6) MER21C|LTR|ERVL -78168 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 231.333-15 chr12 27194929 27195387 + 1 NA Intergenic L2a|LINE|L2 -49128 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 242.333-25 chr7 130838879 130839231 + 1 NA Intergenic Intergenic 37755 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 294.5-24 chr5 159284279 159284791 + 1 NA intron (NM_145049, intron 10 of 10) intron (NM_145049, intron 10 of 10) 21245 NM_145049 134510 Hs.591733 NM_145049 ENSG00000164332 UBLCP1 CPUB1 ubiquitin like domain containing CTD phosphatase 1 protein-coding 240.667-34 chr8 27591828 27592191 + 1 NA Intergenic Intergenic 18742 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 191.167-15 chr2 114482284 114482495 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 20812 NM_001321911 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 235.333-14 chr20 48856914 48857282 + 1 NA Intergenic AluSx|SINE|Alu -29099 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 163.333-34 chr2 225922636 225922907 + 1 NA Intergenic Intergenic -220023 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 169.833-4 chr11 47023390 47023884 + 1 NA intron (NR_103472, intron 2 of 7) L1MB3|LINE|L1 86876 NR_103471 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 333.167-3 chr4 106329173 106329698 + 1 NA intron (NM_001142416, intron 4 of 6) intron (NM_001142416, intron 4 of 6) -12641 NM_001163436 93627 Hs.151498 NM_033115 ENSG00000145348 TBCK HSPC302|IHPRF3|TBCKL TBC1 domain containing kinase protein-coding 512.667-2 chr1 114669883 114670976 + 1 NA promoter-TSS (NM_198459) promoter-TSS (NM_198459) -380 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 234.167-18 chr4 71049436 71049960 + 1 NA Intergenic L1PA11|LINE|L1 56049 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 252.833-7 chr15 94004722 94005260 + 1 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 102947 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 317.5-5 chr18 11115127 11115513 + 1 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 33442 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 175.667-15 chr13 62502799 62502987 + 1 NA Intergenic Plat_L3|LINE|CR1 179236 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 261.333-20 chr8 98900384 98900972 + 1 NA intron (NM_001256312, intron 1 of 12) AluSz|SINE|Alu 41932 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 194.5-28 chr2 227528042 227528335 + 1 NA intron (NM_001135189, intron 5 of 11) intron (NM_001135189, intron 5 of 11) 56016 NM_004504 3267 Hs.352962 NM_004504 ENSG00000173744 AGFG1 HRB|RAB|RIP ArfGAP with FG repeats 1 protein-coding 211.333-8 chr10 93349019 93349326 + 1 NA intron (NM_013451, intron 36 of 53) intron (NM_013451, intron 36 of 53) 133162 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 203.667-34 chr4 173587491 173587880 + 1 NA intron (NR_136196, intron 4 of 4) intron (NR_136196, intron 4 of 4) 57227 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 226.167-5 chr11 31362898 31363155 + 1 NA intron (NM_181807, intron 1 of 8) intron (NM_181807, intron 1 of 8) 6713 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 354.333-10 chr7 78156221 78156892 + 1 NA intron (NM_001301128, intron 15 of 20) MIR|SINE|MIR -190686 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 252.833-8 chr17 67390361 67390722 + 1 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) 13260 NM_181671 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein cytoplasmic 1 protein-coding 167.667-34 chr5 59651804 59652180 + 1 NA intron (NM_001165899, intron 3 of 16) LTR16A|LTR|ERVL 51711 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 229.667-31 chr5 74641767 74642156 + 1 NA promoter-TSS (NM_001256575) promoter-TSS (NM_001256575) -537 NM_001256576 8507 Hs.104925 NM_003633 ENSG00000171617 ENC1 CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10 ectodermal-neural cortex 1 protein-coding 257.833-10 chr9 97820436 97820781 + 1 NA intron (NR_147055, intron 1 of 10) intron (NR_147055, intron 1 of 10) 32472 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 262.5-28 chr7 127652096 127652360 + 1 NA promoter-TSS (NM_014390) promoter-TSS (NM_014390) 34 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 321.667 chr10 119206263 119206849 + 1 NA Intergenic Intergenic -1015 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 243.5-19 chr20 14609783 14610187 + 1 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 55601 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 236.833-5 chr12 56007859 56008262 + 1 NA intron (NM_001351091, intron 1 of 8) intron (NM_001351091, intron 1 of 8) 556 NM_001351089 64375 Hs.553221 NM_022465 ENSG00000123411 IKZF4 EOS|ZNFN1A4 IKAROS family zinc finger 4 protein-coding 179.667-12 chr15 69414713 69415076 + 1 NA non-coding (NR_132970, exon 1 of 3) non-coding (NR_132970, exon 1 of 3) 135 NR_132970 145694 Hs.147229 NR_132969 ENSG00000259426 LOC145694 - uncharacterized LOC145694 ncRNA 245.667-8 chr14 20291261 20291654 + 1 NA intron (NM_138376, intron 9 of 9) MIRb|SINE|MIR 14494 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 372.833-5 chr17 43170457 43171181 + 1 NA promoter-TSS (NM_001291572) promoter-TSS (NM_001291572) -395 NM_001291571 4077 Hs.277721 NM_005899 ENSG00000188554 NBR1 1A1-3B|IAI3B|M17S2|MIG19 NBR1 autophagy cargo receptor protein-coding 270.833-12 chr4 63793929 63794423 + 1 NA Intergenic Intergenic 615274 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 177.5-40 chr4 77172076 77172297 + 1 NA Intergenic Intergenic 14979 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 292.667-9 chr2 40117729 40118036 + 1 NA intron (NM_001351483, intron 8 of 8) intron (NM_001351483, intron 8 of 8) 200248 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 247.667-15 chr18 62143474 62143967 + 1 NA intron (NM_176787, intron 10 of 30) intron (NM_176787, intron 10 of 30) 43336 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 223.333-9 chr10 96865102 96865335 + 1 NA intron (NM_001170766, intron 2 of 8) intron (NM_001170766, intron 2 of 8) 32273 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 198.667-5 chr11 10259504 10259943 + 1 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 34484 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 368.167-9 chrX 114408233 114408981 + 1 NA Intergenic Intergenic -175471 NM_000868 3358 Hs.149037 NM_000868 ENSG00000147246 HTR2C 5-HT1C|5-HT2C|5-HTR2C|5HTR2C|HTR1C 5-hydroxytryptamine receptor 2C protein-coding 217.333-27 chr4 66411588 66412012 + 1 NA Intergenic L1ME1|LINE|L1 134976 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 171.667-44 chr4 86619871 86620265 + 1 NA intron (NM_080685, intron 1 of 47) MER113|DNA|hAT-Charlie 25753 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 240.833-2 chr10 51284101 51284573 + 1 NA intron (NM_001098512, intron 2 of 17) MIR|SINE|MIR -15236 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 232.5-25 chr4 142842789 142843155 + 1 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 3563 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 164.333-54 chr9 5957288 5957644 + 1 NA intron (NM_001017969, intron 3 of 7) MIRb|SINE|MIR -50360 NR_039811 100616288 NR_039811 ENSG00000263575 MIR4665 mir-4665 microRNA 4665 ncRNA 191.667-17 chr17 51229170 51229559 + 1 NA intron (NM_017643, intron 2 of 16) intron (NM_017643, intron 2 of 16) 30685 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 167.667-43 chr7 27783602 27783833 + 1 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 43622 NM_006024 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 185.167-18 chr2 208516675 208517020 + 1 NA Intergenic Intergenic -25795 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 453.333-2 chr8 87750306 87750915 + 1 NA Intergenic Intergenic 123405 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 270.333-4 chr13 91647476 91647813 + 1 NA intron (NM_004466, intron 2 of 7) LTR16B2|LTR|ERVL 249023 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 189.333-41 chr8 93922036 93922332 + 1 NA exon (NM_001161780, exon 3 of 3) exon (NM_001161780, exon 3 of 3) 5237 NM_001161779 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 227.5-22 chr3 95299464 95299853 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 361395 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 252.833-3 chr1 209266458 209266866 + 1 NA Intergenic Intergenic -58794 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 241.167-11 chr16 53053384 53053633 + 1 NA promoter-TSS (NR_136518) promoter-TSS (NR_136518) -635 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 214.167-16 chr20 18413164 18413418 + 1 NA intron (NM_001367611, intron 12 of 20) MER91B|DNA|hAT-Tip100 34242 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 405.333-2 chr1 203117566 203118235 + 1 NA Intergenic Intergenic -9826 NM_001365065 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 203.333-8 chr10 60754226 60754512 + 1 NA Intergenic Intergenic -20841 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 213.333-2 chr10 55585873 55586170 + 1 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -13021 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 273.833-3 chr17 19629164 19629593 + 1 NA Intergenic Intergenic -18772 NM_001369146 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 200.5-30 chr20 7003197 7003501 + 1 NA Intergenic Intergenic 235663 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 167.5-33 chr5 154794217 154794461 + 1 NA intron (NM_001367714, intron 8 of 19) intron (NM_001367714, intron 8 of 19) -35119 NR_039667 100616306 NR_039667 ENSG00000263361 MIR378H - microRNA 378h ncRNA 387.333-7 chr6 114772825 114773544 + 1 NA Intergenic Intergenic -710307 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 234.333-36 chr8 31405134 31405663 + 1 NA Intergenic MER20|DNA|hAT-Charlie -234354 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 280.333-20 chr4 78230831 78231250 + 1 NA intron (NM_001166133, intron 2 of 41) AluSx3|SINE|Alu -57945 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 229.5-28 chr4 72534180 72534565 + 1 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 34849 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 320.667-3 chr1 232787574 232787920 + 1 NA Intergenic Charlie29a|DNA|hAT-Charlie -17145 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 168.333-35 chr2 88670781 88670998 + 1 NA Intergenic AluJb|SINE|Alu -20784 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 276.667-26 chrX 118459374 118459659 + 1 NA Intergenic MIR3|SINE|MIR -36393 NM_144658 139818 Hs.368203 NM_144658 ENSG00000147251 DOCK11 ACG|ZIZ2|bB128O4.1 dedicator of cytokinesis 11 protein-coding 216.833 chr1 40281784 40282028 + 1 NA intron (NM_005857, intron 7 of 9) intron (NM_005857, intron 7 of 9) 23670 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 215.333-22 chr17 73798141 73798533 + 1 NA intron (NR_040020, intron 5 of 6) intron (NR_040020, intron 5 of 6) 11515 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 225.5-9 chr14 65033988 65034296 + 1 NA intron (NM_002028, intron 7 of 11) HAL1|LINE|L1 -10546 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 197.667-25 chr18 13198179 13198495 + 1 NA Intergenic L1M6|LINE|L1 -20423 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 179.333-52 chr9 1727255 1727612 + 1 NA Intergenic Intergenic -287914 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 181.667-33 chr3 81198948 81199148 + 1 NA Intergenic Intergenic 205180 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 171.667-34 chr20 14137883 14138177 + 1 NA intron (NM_001351663, intron 3 of 17) L1MA9|LINE|L1 142514 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 318.833-3 chr16 71311588 71312170 + 1 NA Intergenic Intergenic -22157 NM_001324377 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 203.167-16 chr2 169527450 169527879 + 1 NA TTS (NM_001322046) TTS (NM_001322046) 17962 NM_006063 10324 Hs.50550 NM_006063 ENSG00000239474 KLHL41 KBTBD10|Krp1|SARCOSIN kelch like family member 41 protein-coding 196.333-19 chr18 29163562 29163846 + 1 NA Intergenic Intergenic -986574 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 171.333-31 chr20 58127795 58128108 + 1 NA Intergenic Intergenic -22951 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 221.667-29 chr21 22575212 22575491 + 1 NA Intergenic LTR64|LTR|ERV1 476734 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 171.167-22 chr2 102551695 102552039 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR -67686 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 207.167-25 chr7 29618615 29618855 + 1 NA Intergenic L1MD3|LINE|L1 53202 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 252.333-17 chr8 28587812 28588064 + 1 NA Intergenic MER83B|LTR|ERV1 -82756 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 165.833-39 chr9 108664411 108664816 + 1 NA Intergenic L2a|LINE|L2 191373 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 281.667-17 chr22 36121994 36122412 + 1 NA Intergenic AluSx|SINE|Alu 38552 NM_014349 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 228.667-2 chr1 174999738 175000221 + 1 NA promoter-TSS (NM_014412) promoter-TSS (NM_014412) 32 NM_014412 27101 Hs.508524 NM_014412 ENSG00000116161 CACYBP GIG5|PNAS-107|S100A6BP|SIP calcyclin binding protein protein-coding 379.5-2 chr11 28991742 28992165 + 1 NA Intergenic Intergenic -514405 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 258.667-29 chr9 84927024 84927421 + 1 NA intron (NM_001018064, intron 13 of 17) L4_B_Mam|LINE|RTE-X 221321 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 182.833-15 chr15 70699434 70699697 + 1 NA exon (NM_001008224, exon 2 of 19) exon (NM_001008224, exon 2 of 19) 2717 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 255.333-27 chr8 81712466 81712959 + 1 NA intron (NR_033193, intron 5 of 7) L1MEi|LINE|L1 8588 NM_024699 79752 Hs.655453 NM_024699 ENSG00000104231 ZFAND1 - zinc finger AN1-type containing 1 protein-coding 205.333-34 chr3 32832450 32832813 + 1 NA intron (NM_001039111, intron 1 of 3) AluSc8|SINE|Alu 14634 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 294.667-4 chr10 56974027 56974358 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR 330367 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 172.667-23 chr16 71802180 71802405 + 1 NA intron (NM_001128, intron 1 of 22) AluJr4|SINE|Alu 6542 NM_001128 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 subunit gamma 1 protein-coding 201.333-12 chr13 36746199 36746575 + 1 NA Intergenic Intergenic 72367 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 207.5-40 chr9 130863830 130864045 + 1 NA intron (NM_007313, intron 4 of 10) intron (NM_007313, intron 4 of 10) 28683 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 169.333-28 chr17 49160988 49161269 + 1 NA intron (NM_153446, intron 7 of 10) AluSx1|SINE|Alu 28359 NM_153446 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 228.5-12 chr19 33563410 33563779 + 1 NA Intergenic L1ME3F|LINE|L1 -41803 NM_001166057 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 202.833-27 chr7 113698095 113698443 + 1 NA Intergenic Intergenic 220740 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 286.167-21 chr8 132177798 132178144 + 1 NA intron (NM_001204824, intron 4 of 14) intron (NM_001204824, intron 4 of 14) -72706 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 204.5-18 chr2 27296939 27297292 + 1 NA intron (NM_187841, intron 1 of 8) MLT1J|LTR|ERVL-MaLR 11330 NM_003353 7349 Hs.534363 NM_003353 ENSG00000163794 UCN UI|UROC urocortin protein-coding 201.5-40 chrX 40546946 40547190 + 1 NA Intergenic MIRb|SINE|MIR -33902 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 224.333-32 chr6 152944894 152945399 + 1 NA Intergenic Intergenic 37895 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 236.5-29 chr4 80903639 80904079 + 1 NA intron (NM_152770, intron 4 of 5) intron (NM_152770, intron 4 of 5) -126849 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 354.5 chr1 151546961 151547554 + 1 NA intron (NM_001126337, intron 1 of 11) intron (NM_001126337, intron 1 of 11) 1461 NR_030280 693139 NR_030280 ENSG00000207606 MIR554 MIRN554|hsa-mir-554 microRNA 554 ncRNA 290.5-6 chr14 94831409 94831779 + 1 NA Intergenic Intergenic 60952 NR_144432 108868751 NR_144432 GSC-DT DIGIT GSC divergent transcript ncRNA 213.667-8 chr14 89939581 89939912 + 1 NA intron (NM_001284269, intron 3 of 5) intron (NM_001284269, intron 3 of 5) 14790 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 257.667-15 chr3 88149972 88150425 + 1 NA promoter-TSS (NM_001195308) promoter-TSS (NM_001195308) 239 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 208.667-26 chr2 118572001 118572346 + 1 NA Intergenic Intergenic 30793 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 287.5 chr1 119141132 119141438 + 1 NA promoter-TSS (NM_201263) promoter-TSS (NM_201263) -613 NM_201263 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 180.5-3 chr1 69465131 69465608 + 1 NA Intergenic AluSx|SINE|Alu 32114 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 284.833-13 chr4 69028946 69029237 + 1 NA Intergenic Intergenic -8695 NM_001144767 7365 Hs.201634 NM_001075 ENSG00000109181 UGT2B10 UDPGT2B10 UDP glucuronosyltransferase family 2 member B10 protein-coding 224.667-4 chr1 224644689 224644962 + 1 NA intron (NM_152495, intron 1 of 5) intron (NM_152495, intron 1 of 5) 28508 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 306.333-4 chr2 32721704 32722016 + 1 NA intron (NM_017735, intron 10 of 19) AluJr|SINE|Alu 86605 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 262.333-9 chr13 106936458 106936890 + 1 NA Intergenic Intergenic 282794 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 221.5-16 chr4 39221908 39222231 + 1 NA intron (NM_025132, intron 14 of 36) L1ME2|LINE|L1 39540 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 278.667-30 chr8 78200816 78201190 + 1 NA Intergenic Intergenic -315337 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 244.333-4 chr10 112868035 112868351 + 1 NA Intergenic L1ME4a|LINE|L1 44697 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 179.333-31 chr20 49384747 49385002 + 1 NA intron (NM_004975, intron 1 of 1) Charlie8|DNA|hAT-Charlie 97794 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 203.333-65 chr9 30487480 30487824 + 1 NA Intergenic MIR|SINE|MIR -79198 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 270.333-2 chr12 123085563 123085874 + 1 NA TTS (NR_038290) TTS (NR_038290) 4334 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 PITPNM2-AS1 - PITPNM2 antisense RNA 1 ncRNA 216.667-8 chr12 15022516 15023062 + 1 NA Intergenic L1MD1|LINE|L1 20956 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 249.333-6 chr12 106955429 106955709 + 1 NA promoter-TSS (NM_001319664) promoter-TSS (NM_001319664) -153 NM_001319661 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 243.333-18 chr16 27110229 27110619 + 1 NA Intergenic Intergenic 43497 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 439.833 chr14 60756455 60757143 + 1 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 22038 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 195.833 chr1 64623799 64624303 + 1 NA intron (NM_020925, intron 4 of 26) intron (NM_020925, intron 4 of 26) 44204 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 180.167-15 chr4 114180613 114180910 + 1 NA Intergenic Intergenic -201114 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 232.333 chr1 113042017 113042485 + 1 NA intron (NR_103777, intron 2 of 2) intron (NR_103777, intron 2 of 2) 30851 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LRIG2-DT - LRIG2 divergent transcript ncRNA 207.667-2 chr1 77741704 77742095 + 1 NA intron (NM_201624, intron 1 of 23) intron (NM_201624, intron 1 of 23) 17953 NM_201626 23032 Hs.480597 NM_015017 ENSG00000077254 USP33 VDU1 ubiquitin specific peptidase 33 protein-coding 300.333-4 chr15 33130473 33131046 + 1 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) -62585 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 252.5-21 chr6 123317718 123318105 + 1 NA intron (NM_006073, intron 23 of 40) intron (NM_006073, intron 23 of 40) -121693 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 322.5-25 chr6 18387589 18388090 + 1 NA intron (NM_182757, intron 1 of 7) intron (NM_182757, intron 1 of 7) 489 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 210.167-32 chr8 15453539 15453831 + 1 NA Intergenic Intergenic -86402 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 325.333 chr1 116570142 116570601 + 1 NA intron (NM_001779, intron 1 of 5) CpG 655 NR_026665 965 Hs.34341 NM_001779 ENSG00000116815 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 233.667 chr1 152403867 152404293 + 1 NA Intergenic Intergenic 10183 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 209.5-2 chr1 103105312 103105683 + 1 NA intron (NM_001854, intron 1 of 66) intron (NM_001854, intron 1 of 66) 2999 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 183.333-12 chr11 26305300 26305499 + 1 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) -17392 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 308.5-9 chr15 24847703 24848112 + 1 NA intron (NM_001349459, intron 2 of 11) intron (NM_001349459, intron 2 of 11) -8605 NM_022805 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 452.667-2 chr2 211035131 211035968 + 1 NA Intergenic Intergenic 417978 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 187.333-12 chr11 38888681 38889009 + 1 NA Intergenic Intergenic 239987 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 267.167-17 chr9 73281241 73281657 + 1 NA Intergenic Intergenic 129584 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 282.5-6 chr15 100490874 100491252 + 1 NA intron (NM_001290341, intron 5 of 13) intron (NM_001290341, intron 5 of 13) 53223 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 229.667-46 chr8 126093075 126093429 + 1 NA Intergenic MIRc|SINE|MIR -142055 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 235.667-25 chr6 145410241 145410694 + 1 NA Intergenic Intergenic 276410 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 188.333-41 chr8 100813083 100813418 + 1 NA Intergenic MER39|LTR|ERV1 -91162 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 256.333-14 chr22 29997356 29997633 + 1 NA intron (NM_153051, intron 7 of 18) intron (NM_153051, intron 7 of 18) -9555 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 172.667-13 chr11 84612624 84612869 + 1 NA intron (NM_001351274, intron 5 of 26) MIRb|SINE|MIR 108196 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 325.333-13 chr7 25896706 25897402 + 1 NA Intergenic Intergenic 52932 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 174.5-14 chr18 54642176 54642453 + 1 NA Intergenic Intergenic 51155 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 233.333-32 chr8 58393641 58393953 + 1 NA Intergenic Intergenic -17467 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 244.667-3 chr1 89926715 89927094 + 1 NA intron (NM_001134479, intron 2 of 2) MIRb|SINE|MIR 68062 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 227.333-4 chr10 28982897 28983308 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 136694 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 246.333-10 chr12 1184212 1184593 + 1 NA intron (NR_027948, intron 10 of 19) intron (NR_027948, intron 10 of 19) 156654 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 210.667-33 chr4 75995399 75995746 + 1 NA intron (NR_125906, intron 1 of 2) intron (NR_125906, intron 1 of 2) -4610 NM_001288984 55153 Hs.632604 NM_018115 ENSG00000198301 SDAD1 - SDA1 domain containing 1 protein-coding 246.833 chr1 66045427 66045926 + 1 NA intron (NR_123718, intron 2 of 2) L2c|LINE|L2 5042 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 258.167-8 chr12 117077029 117077660 + 1 NA intron (NR_031766, intron 1 of 7) L1ME3A|LINE|L1 22072 NM_017899 54997 Hs.525709 NM_017899 ENSG00000088992 TESC CHP3|TSC tescalcin protein-coding 190.667-8 chr10 56406848 56407256 + 1 NA Intergenic Intergenic -45779 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 235.167-26 chr6 7505631 7506061 + 1 NA Intergenic Intergenic -35825 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 211.667-6 chr11 31237055 31237461 + 1 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 132481 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 201.167-11 chr14 46655571 46656000 + 1 NA Intergenic Intergenic -4004 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 235.667-4 chr10 76303966 76304430 + 1 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 521437 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 225.667 chr1 95778076 95778370 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -213845 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 305.833-16 chr9 80314905 80315219 + 1 NA Intergenic AluSz|SINE|Alu 340039 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 231.5-26 chr3 27671099 27671428 + 1 NA Intergenic AluJo|SINE|Alu 51060 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 184.333-11 chr13 64264841 64265202 + 1 NA Intergenic HSMAR2|DNA|TcMar-Mariner -189010 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 170.333-39 chr3 8490244 8490576 + 1 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 11248 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 240.333-9 chr18 13268844 13269095 + 1 NA intron (NM_181482, intron 1 of 5) intron (NM_181482, intron 1 of 5) -9136 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 403.667-4 chr4 83284250 83284894 + 1 NA exon (NM_001358921, exon 1 of 7) exon (NM_001358921, exon 1 of 7) 223 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 170.333-44 chr4 103531433 103531811 + 1 NA Intergenic Intergenic 106580 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 210.5-22 chr2 134512172 134512546 + 1 NA intron (NM_030923, intron 4 of 7) AluSx|SINE|Alu 206641 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 166.333-22 chr15 79854498 79854761 + 1 NA intron (NR_037654, intron 2 of 2) intron (NR_037654, intron 2 of 2) 42368 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 281.333-26 chr6 62368193 62368517 + 1 NA Intergenic MIRb|SINE|MIR -82128 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 210.667-36 chr5 14991379 14991740 + 1 NA Intergenic Intergenic -119781 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 215.667-15 chr12 77724158 77724520 + 1 NA Intergenic Intergenic -106555 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 308.667-12 chr5 10515232 10516161 + 1 NA intron (NR_134289, intron 1 of 2) L1M4|LINE|L1 6388 NR_134289 389273 Hs.519206 NR_134289 ENSG00000249160 LINC02213 - long intergenic non-protein coding RNA 2213 ncRNA 172.5-22 chr18 4122778 4122988 + 1 NA intron (NM_001242761, intron 2 of 11) LTR68|LTR|ERV1 -141719 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 178.333-8 chr12 813408 813816 + 1 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 60689 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 168.333-52 chr4 151655367 151655589 + 1 NA intron (NM_001109977, intron 11 of 13) intron (NM_001109977, intron 11 of 13) 105529 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 169.667-51 chr6 3885748 3886015 + 1 NA Intergenic L2a|LINE|L2 36508 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 233.667-27 chr5 161218751 161219193 + 1 NA Intergenic Intergenic -280346 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 203.5-18 chr17 22702103 22702449 + 1 NA Intergenic L1MA8|LINE|L1 179165 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 339.5-6 chr18 5943099 5943703 + 1 NA Intergenic Intergenic -47447 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 242.333-27 chr8 119003721 119004322 + 1 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 51758 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 177.833-34 chr7 100479254 100479537 + 1 NA promoter-TSS (NM_001303043) promoter-TSS (NM_001303043) -116 NR_130118 81628 Hs.469798 NM_030935 ENSG00000166925 TSC22D4 THG-1|THG1|TILZ2 TSC22 domain family member 4 protein-coding 173.333-9 chr13 19782693 19782964 + 1 NA non-coding (NR_149053, exon 1 of 9) non-coding (NR_149053, exon 1 of 9) 117 NM_001354908 55269 Hs.213198 NM_001042414 ENSG00000121390 PSPC1 PSP1 paraspeckle component 1 protein-coding 214.667-27 chr3 49606345 49606637 + 1 NA intron (NM_003458, intron 1 of 11) L2a|LINE|L2 52014 NM_003458 8927 Hs.194684 NM_003458 ENSG00000164061 BSN ZNF231 bassoon presynaptic cytomatrix protein protein-coding 176.667-42 chr4 81038868 81039093 + 1 NA intron (NM_001201, intron 1 of 2) intron (NM_001201, intron 1 of 2) 8272 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 246.5-21 chr2 33497019 33497348 + 1 NA intron (NM_001349975, intron 3 of 19) intron (NM_001349975, intron 3 of 19) -16692 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 170.5-3 chr1 184869141 184869373 + 1 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) 105251 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 361.667-3 chr11 43407070 43407621 + 1 NA intron (NM_001307943, intron 14 of 19) intron (NM_001307943, intron 14 of 19) 48425 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 370.5 chr1 59296491 59297219 + 1 NA promoter-TSS (NM_001350797) promoter-TSS (NM_001350797) 42 NM_001350793 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 171.333-12 chr12 120471944 120472229 + 1 NA intron (NM_001037494, intron 1 of 2) intron (NM_001037494, intron 1 of 2) 2244 NM_001037494 8655 Hs.5120 NM_003746 ENSG00000088986 DYNLL1 DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1 dynein light chain LC8-type 1 protein-coding 303.667-6 chr16 29848287 29848669 + 1 NA TTS (NM_001293205) TTS (NM_001293205) 14748 NM_001286585 10423 Hs.121549 NM_006319 ENSG00000103502 CDIPT PIS|PIS1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase protein-coding 163.667-39 chr4 21097777 21098090 + 1 NA intron (NM_147182, intron 2 of 8) Tigger1|DNA|TcMar-Tigger -113924 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 260.5-9 chr14 51701484 51701918 + 1 NA intron (NM_001267046, intron 4 of 13) intron (NM_001267046, intron 4 of 13) -15582 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 261.167-5 chr14 33342696 33342993 + 1 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) -366093 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 240.333-6 chr15 26323800 26324240 + 1 NA Intergenic L1MB8|LINE|L1 208207 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 218.833-8 chr12 19673502 19673904 + 1 NA Intergenic AluSx|SINE|Alu 233104 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 206.5-21 chr16 49765774 49766048 + 1 NA intron (NM_001271620, intron 2 of 7) L1MB3|LINE|L1 56827 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 181.667-26 chr2 151617077 151617298 + 1 NA intron (NM_001271208, intron 75 of 182) intron (NM_001271208, intron 75 of 182) 117289 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 193.667-8 chr1 201383846 201384155 + 1 NA intron (NM_005558, intron 5 of 9) L2c|LINE|L2 -6320 NM_001001432 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 261.667-21 chr5 124417638 124417972 + 1 NA intron (NR_125774, intron 3 of 5) MER39|LTR|ERV1 20715 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 266.5-2 chr1 31885494 31885900 + 1 NA Intergenic AluSx|SINE|Alu 52121 NM_001369859 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 216.5-42 chr7 69329178 69329541 + 1 NA Intergenic Intergenic 268265 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 208.167-9 chr14 26442034 26442559 + 1 NA TTS (NM_001366394) TTS (NM_001366394) 111134 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 239.333-3 chr11 6022097 6022493 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR 5446 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 180.333-25 chr2 65320645 65320855 + 1 NA intron (NM_001128210, intron 4 of 5) intron (NM_001128210, intron 4 of 5) 46028 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 245.667-20 chr4 183241995 183242361 + 1 NA intron (NM_024949, intron 5 of 22) intron (NM_024949, intron 5 of 22) -1544 NR_126473 101928734 Hs.570713 NR_126473 ENSG00000251128 WWC2-AS1 - WWC2 antisense RNA 1 ncRNA 303.667-3 chr12 33571589 33572220 + 1 NA Intergenic Intergenic -132085 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 226.5-40 chr7 107158310 107158639 + 1 NA intron (NM_002736, intron 10 of 10) intron (NM_002736, intron 10 of 10) -10487 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 202.5-3 chr1 108986589 108986827 + 1 NA intron (NM_014969, intron 9 of 14) intron (NM_014969, intron 9 of 14) -23209 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 226.5-37 chr6 154776082 154776455 + 1 NA intron (NM_014892, intron 2 of 19) intron (NM_014892, intron 2 of 19) 42890 NM_001286188 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 188.333-21 chr2 39915233 39915470 + 1 NA Intergenic L1MA4A|LINE|L1 -2283 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 167.833-27 chr2 126324177 126324417 + 1 NA Intergenic Intergenic -206312 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 204.333-10 chr12 18131981 18132341 + 1 NA Intergenic Helitron1Nb_Mam|RC|Helitron -41968 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 165.333-3 chr1 165537808 165538027 + 1 NA intron (NR_026744, intron 3 of 6) intron (NR_026744, intron 3 of 6) -6324 NM_001005214 440699 Hs.664975 NM_001005214 ENSG00000162763 LRRC52 - leucine rich repeat containing 52 protein-coding 285.5-22 chr4 32229405 32229818 + 1 NA Intergenic (TTAATT)n|Simple_repeat|Simple_repeat -121427 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 286.333-8 chr2 158573013 158573401 + 1 NA intron (NM_001005476, intron 2 of 20) L1ME3Cz|LINE|L1 116255 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 365.667-3 chr14 20845236 20845716 + 1 NA Intergenic L1MEf|LINE|L1 -42632 NM_198234 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 211.333-21 chr2 32333430 32333677 + 1 NA Intergenic L1MC4a|LINE|L1 -23475 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 176.5-10 chr15 50947751 50948024 + 1 NA intron (NM_001252127, intron 10 of 20) intron (NM_001252127, intron 10 of 20) 3758 NR_027642 100132724 Hs.730493 NR_027642 DCAF13P3 - DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo 230.667-29 chr8 137305261 137305564 + 1 NA Intergenic Intergenic 108176 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 252.333-18 chr8 132913594 132913897 + 1 NA intron (NM_003235, intron 20 of 47) intron (NM_003235, intron 20 of 47) 46787 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 207.5-29 chr4 178026631 178026998 + 1 NA Intergenic L1ME2|LINE|L1 -118878 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 185.333-18 chr16 78898097 78898453 + 1 NA intron (NM_001291997, intron 7 of 7) L1ME2|LINE|L1 702462 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 229.667 chr1 24775445 24775820 + 1 NA intron (NM_013943, intron 1 of 5) L1MEb|LINE|L1 30185 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 180.333-40 chr3 140184275 140184661 + 1 NA intron (NM_022131, intron 2 of 16) THE1C|LTR|ERVL-MaLR 249283 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 221.5-4 chr10 34095681 34096067 + 1 NA Intergenic L1M4c|LINE|L1 -323194 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 253.667-8 chr12 28593306 28593805 + 1 NA Intergenic Charlie5|DNA|hAT-Charlie -402817 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 261.5-26 chr3 73057971 73058358 + 1 NA intron (NM_001318026, intron 3 of 8) intron (NM_001318026, intron 3 of 8) -3495 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 292.667 chr12 46113075 46113514 + 1 NA Intergenic Intergenic -122720 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 183.333-44 chr3 37201682 37201976 + 1 NA Intergenic Intergenic -25469 NM_001348305 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 197.333-33 chr6 119351190 119351594 + 1 NA Intergenic Intergenic -1631 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 174.5-23 chr3 80821520 80821796 + 1 NA Intergenic L1MEc|LINE|L1 50954 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 181.667-38 chr5 63565184 63565455 + 1 NA Intergenic MER52-int|LTR|ERV1 396973 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 263.667-22 chr7 26668371 26668641 + 1 NA 3' UTR (NM_001303468, exon 13 of 13) 3' UTR (NM_001303468, exon 13 of 13) 30635 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 293.667 chr10 4494904 4495307 + 1 NA Intergenic Intergenic 88636 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 172.333-36 chr20 63195016 63195389 + 1 NA TTS (NM_017798) TTS (NM_017798) 16702 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 173.5-7 chr1 238366377 238366667 + 1 NA Intergenic L1MC3|LINE|L1 119495 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 341.167 chr1 103424038 103424430 + 1 NA intron (NM_001347929, intron 4 of 5) intron (NM_001347929, intron 4 of 5) 101277 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 202.167-13 chr15 43189986 43190306 + 1 NA non-coding (NR_045998, exon 4 of 10) non-coding (NR_045998, exon 4 of 10) 4743 NR_045999 23582 Hs.36794 NM_012142 ENSG00000166946 CCNDBP1 DIP1|GCIP|HHM cyclin D1 binding protein 1 protein-coding 375.833 chr1 12727139 12727609 + 1 NA non-coding (NR_111984, exon 3 of 3) non-coding (NR_111984, exon 3 of 3) 11259 NR_111984 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 284.667-12 chr5 52910165 52910580 + 1 NA exon (NM_181501, exon 14 of 29) exon (NM_181501, exon 14 of 29) -78980 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 344.667-10 chr20 13839501 13840027 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 54736 NR_147980 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 294.5-10 chr14 77095382 77095846 + 1 NA Intergenic Intergenic -2644 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 278.5-22 chr8 121180309 121180666 + 1 NA Intergenic L1MA8|LINE|L1 -368441 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 314.667-2 chr11 6604829 6605228 + 1 NA intron (NM_001278442, intron 2 of 11) L2c|LINE|L2 1254 NM_001014794 3611 Hs.706355 NM_004517 ENSG00000166333 ILK HEL-S-28|ILK-1|ILK-2|P59|p59ILK integrin linked kinase protein-coding 165.333-42 chr7 6463088 6463381 + 1 NA intron (NM_001100603, intron 3 of 3) intron (NM_001100603, intron 3 of 3) -15222 NM_001142936 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 274.833-6 chr18 7452544 7452969 + 1 NA Intergenic Intergenic 8250 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 223.333-45 chr8 63039619 63040029 + 1 NA Intergenic Intergenic -1018 NM_003878 8836 Hs.78619 NM_003878 ENSG00000137563 GGH GH gamma-glutamyl hydrolase protein-coding 180.667-33 chr3 140128511 140128738 + 1 NA intron (NM_022131, intron 1 of 16) LTR33|LTR|ERVL 193439 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 362.167-12 chr22 19723083 19723545 + 1 NA promoter-TSS (NM_000407) promoter-TSS (NM_000407) -229 NM_000407 2812 Hs.283743 NM_000407 ENSG00000203618 GP1BB BDPLT1|BS|CD42C|GPIBB|GPIbbeta glycoprotein Ib platelet subunit beta protein-coding 201.667-49 chr7 20364586 20364808 + 1 NA intron (NM_002214, intron 2 of 13) intron (NM_002214, intron 2 of 13) -32935 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 207.833-15 chr2 117801003 117801228 + 1 NA Intergenic Intergenic -13576 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 187.667-24 chr17 73138384 73138732 + 1 NA Intergenic Intergenic -26452 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 196.667-34 chr20 49619084 49619406 + 1 NA Intergenic (GGAT)n|Simple_repeat|Simple_repeat -51108 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 281.333-8 chr12 21542983 21543561 + 1 NA intron (NM_021957, intron 12 of 15) intron (NM_021957, intron 12 of 15) 15347 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 193.333-50 chr6 158720211 158720539 + 1 NA intron (NM_001242394, intron 10 of 17) AluSq2|SINE|Alu 44378 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 190.667-38 chr3 108564125 108564506 + 1 NA intron (NM_020890, intron 12 of 20) MIRb|SINE|MIR 25123 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 CIP2A KIAA1524|p90 cell proliferation regulating inhibitor of protein phosphatase 2A protein-coding 222.333-27 chr6 41564165 41564401 + 1 NA intron (NM_001012427, intron 1 of 16) AluSz6|SINE|Alu -15662 NR_126415 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 196.667-36 chr4 21767996 21768299 + 1 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) -70452 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 212.167 chr1 41299300 41299539 + 1 NA Intergenic L1M5|LINE|L1 -57113 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 328.333-5 chr13 26915757 26916229 + 1 NA Intergenic MIRb|SINE|MIR -155207 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 279.333-9 chr17 61754277 61754874 + 1 NA intron (NM_032043, intron 14 of 19) MLT1A|LTR|ERVL-MaLR 108984 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 176.833-22 chr20 38185859 38186049 + 1 NA Intergenic L1MB8|LINE|L1 -19446 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 208.5-40 chr6 169436132 169436683 + 1 NA Intergenic MER65-int|LTR|ERV1 -182293 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 207.5-32 chr6 70484334 70484624 + 1 NA intron (NM_001351608, intron 10 of 21) intron (NM_001351608, intron 10 of 21) -70521 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 227.667-18 chr16 80300696 80301032 + 1 NA intron (NR_120307, intron 2 of 5) (CCT)n|Simple_repeat|Simple_repeat -239870 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 231.167-8 chr11 45272345 45272782 + 1 NA intron (NM_001247987, intron 1 of 7) intron (NM_001247987, intron 1 of 7) 13778 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 169.833-2 chr10 107687063 107687481 + 1 NA Intergenic L1M3|LINE|L1 382021 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 254.833-23 chrX 71652642 71652922 + 1 NA Intergenic Intergenic 14086 NR_136576 100129291 Hs.558667 NR_136576 ENSG00000237265 LOC100129291 - chromosome X open reading frame 49 pseudogene pseudo 234.333-35 chr7 77251323 77251666 + 1 NA intron (NM_020879, intron 4 of 18) L1MCa|LINE|L1 -51675 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 221.167-19 chr4 108392382 108392755 + 1 NA Intergenic Intergenic -164665 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 193.5-8 chr10 52304600 52304915 + 1 NA intron (NR_038277, intron 3 of 5) L1ME3E|LINE|L1 9371 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 285.667-16 chr4 84681726 84682079 + 1 NA intron (NM_014991, intron 64 of 67) intron (NM_014991, intron 64 of 67) 98775 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 223.5-12 chr16 9258199 9258520 + 1 NA Intergenic Intergenic -97229 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 296.667-20 chr7 6009185 6009654 + 1 NA promoter-TSS (NM_001362787) promoter-TSS (NM_001362787) 147 NM_006303 7965 Hs.301613 NM_006303 ENSG00000106305 AIMP2 HLD17|JTV-1|JTV1|P38 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 protein-coding 206.5-5 chr10 10002846 10003147 + 1 NA Intergenic MER58A|DNA|hAT-Charlie -55726 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 333.667-7 chr21 33399980 33400457 + 1 NA Intergenic Arthur1C|DNA|hAT-Tip100 -2678 NM_001329128 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 254.667-16 chr2 105346008 105346510 + 1 NA 3' UTR (NM_024093, exon 4 of 4) 3' UTR (NM_024093, exon 4 of 4) 8719 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 257.167 chr10 101567488 101568062 + 1 NA Intergenic Intergenic 20482 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 201.667-4 chr10 125572749 125573189 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 -1402 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 210.5-5 chr11 29275341 29275700 + 1 NA Intergenic Intergenic -318893 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 169.833-15 chr14 73280527 73281010 + 1 NA intron (NM_001005743, intron 11 of 12) AluSq2|SINE|Alu -34767 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 299.5-5 chr11 74774838 74775161 + 1 NA intron (NM_001098638, intron 1 of 5) L2|LINE|L2 26150 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 212.833-13 chr2 132843310 132843522 + 1 NA intron (NM_207481, intron 11 of 17) L1ME3G|LINE|L1 -72141 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 172.667-2 chr1 27979857 27980048 + 1 NA intron (NM_001282562, intron 15 of 16) intron (NM_001282562, intron 15 of 16) 20490 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 178.667-23 chr2 183880468 183880664 + 1 NA Intergenic L1PB1|LINE|L1 -498409 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 222.5-14 chr13 51176422 51176908 + 1 NA Intergenic Intergenic -4277 NR_102431 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 247.667-35 chr7 124442307 124442619 + 1 NA Intergenic L1ME4b|LINE|L1 -90367 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 224.5-45 chr9 73486518 73486848 + 1 NA Intergenic MER63B|DNA|hAT-Blackjack 334818 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 215.667-39 chr5 147846809 147847155 + 1 NA Intergenic L1MB3|LINE|L1 -7751 NM_003122 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 210.667-32 chr3 69792239 69792638 + 1 NA intron (NM_006722, intron 1 of 9) intron (NM_006722, intron 1 of 9) 28627 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 219.667-33 chr8 78614144 78614471 + 1 NA Intergenic GA-rich|Low_complexity|Low_complexity -51782 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 163.5-33 chr4 43522220 43522560 + 1 NA Intergenic L2b|LINE|L2 -29847 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 225.167 chr1 3900289 3900747 + 1 NA promoter-TSS (NM_207356) promoter-TSS (NM_207356) 114 NR_024455 100133612 Hs.307652 NR_024455 ENSG00000236423 LINC01134 - long intergenic non-protein coding RNA 1134 ncRNA 193.333-28 chr18 77726883 77727092 + 1 NA Intergenic MIR|SINE|MIR 266740 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 289.667-3 chr10 34113576 34114023 + 1 NA intron (NM_001184789, intron 22 of 22) MIRb|SINE|MIR -341119 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 337.667-19 chrX 99407918 99408320 + 1 NA Intergenic Intergenic 1002154 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 256.667-30 chr9 74686801 74687245 + 1 NA 3' UTR (NM_001365023, exon 10 of 10) 3' UTR (NM_001365023, exon 10 of 10) 71489 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 203.667-19 chr17 80833189 80833490 + 1 NA intron (NM_020761, intron 9 of 33) intron (NM_020761, intron 9 of 33) -27707 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 256.667-19 chr3 187855690 187856029 + 1 NA Intergenic Intergenic -110391 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 354.667-7 chr2 55307061 55307415 + 1 NA intron (NM_001254943, intron 25 of 33) intron (NM_001254943, intron 25 of 33) 24919 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 246.333-43 chrX 98232429 98232705 + 1 NA Intergenic L1PREC2|LINE|L1 -668032 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 190.667-53 chr8 24323174 24323478 + 1 NA intron (NR_130710, intron 8 of 22) MLT1A0|LTR|ERVL-MaLR 29257 NR_130710 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 193.333-35 chr2 168170661 168170881 + 1 NA intron (NM_013233, intron 2 of 17) intron (NM_013233, intron 2 of 17) 76824 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 320.5-3 chr1 235972621 235973081 + 1 NA Intergenic AluJr4|SINE|Alu -89138 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 179.5-50 chr8 125001532 125001829 + 1 NA intron (NM_003129, intron 1 of 10) intron (NM_003129, intron 1 of 10) 3175 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 178.5-34 chr6 37991800 37992096 + 1 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 172221 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 230.833-4 chr12 28171873 28172383 + 1 NA Intergenic Intergenic -18328 NM_001352086 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 252.667-4 chr1 202154450 202154950 + 1 NA intron (NM_001199797, intron 5 of 9) MIRb|SINE|MIR 4754 NM_001364878 5778 Hs.402773 NM_002832 ENSG00000143851 PTPN7 BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI protein tyrosine phosphatase non-receptor type 7 protein-coding 258.5-26 chr7 81418027 81418422 + 1 NA Intergenic Intergenic 143595 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 218.667-32 chr6 43725032 43725420 + 1 NA Intergenic Intergenic -37414 NM_001193343 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 276.833-10 chr2 74148238 74148716 + 1 NA promoter-TSS (NM_001035505) promoter-TSS (NM_001035505) 496 NR_045634 100507171 Hs.503348 NR_045634 ENSG00000225439 BOLA3-AS1 - BOLA3 divergent transcript ncRNA 333.667-8 chr22 44021209 44021682 + 1 NA intron (NM_001003828, intron 2 of 13) intron (NM_001003828, intron 2 of 13) -2832 NM_013327 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 264.167-7 chr14 44847682 44848065 + 1 NA Intergenic Intergenic -48747 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 170.333-9 chr11 81000183 81000507 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -237542 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 242.833-16 chr5 110196130 110196627 + 1 NA Intergenic L1M4c|LINE|L1 313196 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 394.167-7 chr18 27685639 27686241 + 1 NA Intergenic Intergenic -343284 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 306.667-10 chr2 11389376 11390299 + 1 NA Intergenic MLT1O|LTR|ERVL-MaLR -4144 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 218.333-18 chr3 1677791 1678103 + 1 NA Intergenic Intergenic -420856 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 175.5-32 chr20 38721907 38722349 + 1 NA Intergenic Intergenic -2358 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 199.333-4 chr1 61143609 61144189 + 1 NA intron (NM_001134673, intron 2 of 10) Tigger15a|DNA|TcMar-Tigger 61338 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 262.833-8 chr2 18082147 18082633 + 1 NA Intergenic Intergenic 203723 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 166.5-46 chr9 128324439 128324697 + 1 NA intron (NM_001305942, intron 2 of 3) AluJr4|SINE|Alu 1729 NM_001305942 51117 Hs.98541 NM_016035 ENSG00000167113 COQ4 CGI-92|COQ10D7 coenzyme Q4 protein-coding 168.5-32 chr3 197372244 197372563 + 1 NA Intergenic MIR3|SINE|MIR -73082 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 230.333-5 chr10 107928246 107928832 + 1 NA intron (NR_125760, intron 4 of 4) L1M5|LINE|L1 140754 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 203.667-33 chr4 71417226 71417531 + 1 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 78325 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 301.333-7 chr14 75294284 75294595 + 1 NA promoter-TSS (NR_038421) promoter-TSS (NR_038421) 35 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 179.167-16 chr2 106881338 106881822 + 1 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 4448 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 252.333-11 chr3 184018687 184019217 + 1 NA Intergenic AluSx1|SINE|Alu -1068 NM_001023587 10057 Hs.368563 NM_005688 ENSG00000114770 ABCC5 ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 ATP binding cassette subfamily C member 5 protein-coding 282.833-14 chr6 53794334 53794870 + 1 NA promoter-TSS (NM_018214) promoter-TSS (NM_018214) -403 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 205.667-18 chr2 70248143 70248442 + 1 NA intron (NM_001351511, intron 1 of 12) intron (NM_001351511, intron 1 of 12) 336 NR_147231 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 204.5-23 chr22 28643522 28643879 + 1 NA intron (NM_001145418, intron 1 of 22) MER103C|DNA|hAT-Charlie 36165 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 288.333-5 chr12 126899819 126900424 + 1 NA Intergenic HAL1|LINE|L1 -25431 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 281.667-20 chr4 44424301 44424800 + 1 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 24259 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 187.833-11 chr14 25403953 25404382 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -353870 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 172.833-3 chr1 160608006 160608338 + 1 NA TTS (NR_104400) TTS (NR_104400) -28656 NM_001184882 8832 Hs.398093 NM_003874 ENSG00000066294 CD84 LY9B|SLAMF5|hCD84|mCD84 CD84 molecule protein-coding 180.333-14 chr12 121486957 121487229 + 1 NA intron (NM_001005366, intron 12 of 22) AluJo|SINE|Alu -42741 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 212.333-14 chr19 34696671 34696948 + 1 NA Intergenic L1P3|LINE|L1 19131 NM_001289192 55900 Hs.436350 NM_018443 ENSG00000089335 ZNF302 HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 zinc finger protein 302 protein-coding 217.833-17 chr6 81221063 81221372 + 1 NA Intergenic MLT1G1|LTR|ERVL-MaLR 531464 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 370.5-10 chr6 42557943 42558505 + 1 NA Intergenic Intergenic -5798 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 209.167-13 chr14 63010471 63010782 + 1 NA intron (NM_139318, intron 2 of 10) intron (NM_139318, intron 2 of 10) 34832 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 261.833-2 chr11 15099774 15100190 + 1 NA Intergenic Intergenic -12442 NM_001031853 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 213.167-22 chr5 103258287 103258812 + 1 NA promoter-TSS (NM_001316969) promoter-TSS (NM_001316969) -214 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 199.333-2 chr1 45468656 45468968 + 1 NA intron (NM_007170, intron 1 of 10) MER20|DNA|hAT-Charlie 22351 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 222.833-9 chr14 90704294 90704543 + 1 NA intron (NM_001320421, intron 5 of 20) MIRb|SINE|MIR 7085 NR_135190 105370622 Hs.662373 NR_135190 ENSG00000258716 LOC105370622 - uncharacterized LOC105370622 ncRNA 179.5-24 chr2 69894154 69894447 + 1 NA intron (NR_037862, intron 1 of 6) MIRb|SINE|MIR 344 NM_006857 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 165.667-39 chr4 130808661 130808946 + 1 NA Intergenic Intergenic 432442 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 383.333-5 chr10 60768767 60769263 + 1 NA Intergenic Intergenic -9316 NM_001170406 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 194.167-6 chr10 88388936 88389153 + 1 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 194274 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 312.167-7 chr6 111754469 111755022 + 1 NA intron (NM_153047, intron 3 of 13) LTR84b|LTR|ERVL 4386 NM_153048 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 167.333-6 chr10 92258334 92258501 + 1 NA intron (NM_014912, intron 1 of 9) intron (NM_014912, intron 1 of 9) -15138 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 174.333-31 chr5 21853990 21854286 + 1 NA intron (NM_001317228, intron 4 of 11) intron (NM_001317228, intron 4 of 11) -30316 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 260.5-16 chr2 77158037 77158476 + 1 NA intron (NR_146416, intron 1 of 1) L1ME3B|LINE|L1 172291 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 165.333-39 chr6 536081 536394 + 1 NA intron (NM_018303, intron 22 of 27) L1MD|LINE|L1 120727 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 221.667-26 chr2 188980541 188980895 + 1 NA intron (NM_000090, intron 1 of 50) intron (NM_000090, intron 1 of 50) -2557 NR_039947 100616324 NR_039947 ENSG00000283238 MIR1245B - microRNA 1245b ncRNA 340.833-9 chr3 98656499 98656935 + 1 NA Intergenic AluSx1|SINE|Alu -63106 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 209.167-4 chr10 50983581 50983819 + 1 NA Intergenic Intergenic -7188 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 304.5-8 chr10 105589963 105590488 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 230108 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 176.5-12 chr17 60606342 60606684 + 1 NA intron (NM_003620, intron 1 of 5) L1MB4|LINE|L1 6330 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 246.333-14 chr12 62380644 62381150 + 1 NA intron (NM_001351165, intron 10 of 23) intron (NM_001351165, intron 10 of 23) -85929 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 174.667-8 chr10 25038087 25038413 + 1 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 21638 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 209.5-27 chr4 114398724 114399172 + 1 NA Intergenic Intergenic -199454 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 261.5-14 chr14 62604474 62604877 + 1 NA Intergenic Intergenic 440783 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 228.167 chr1 37859965 37860352 + 1 NA promoter-TSS (NM_005955) promoter-TSS (NM_005955) -566 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 187.667-20 chr15 69056770 69057303 + 1 NA non-coding (NR_033671, exon 17 of 17) non-coding (NR_033671, exon 17 of 17) -23814 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 273.667-12 chr2 232106318 232106663 + 1 NA intron (NR_046477, intron 6 of 18) L1PA11|LINE|L1 -66163 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 199.667-2 chr1 84932528 84932738 + 1 NA intron (NM_153259, intron 11 of 13) intron (NM_153259, intron 11 of 13) -39427 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 253.167 chr10 73401963 73402413 + 1 NA intron (NM_004034, intron 1 of 13) AluJb|SINE|Alu 11870 NM_001320880 310 Hs.631827 NM_001156 ENSG00000138279 ANXA7 ANX7|SNX|SYNEXIN annexin A7 protein-coding 234.667-5 chr11 60663035 60663382 + 1 NA intron (NR_026946, intron 6 of 6) L2a|LINE|L2 -36404 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 179.333-24 chr2 42807929 42808344 + 1 NA Intergenic MIR3|SINE|MIR -15553 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 277.167 chr1 206724028 206724592 + 1 NA intron (NM_004759, intron 1 of 9) intron (NM_004759, intron 1 of 9) 39405 NM_032960 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 247.833-21 chr8 37123190 37123603 + 1 NA Intergenic L1MC3|LINE|L1 339022 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 411.333-8 chr22 35270958 35271476 + 1 NA intron (NM_001003681, intron 5 of 10) AluJr4|SINE|Alu 13724 NM_001003681 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 166.167-12 chr15 41772665 41772866 + 1 NA Intergenic Intergenic -1719 NR_049761 23005 Hs.513661 NM_014994 ENSG00000137802 MAPKBP1 JNKBP-1|JNKBP1|NPHP20 mitogen-activated protein kinase binding protein 1 protein-coding 172.333-40 chr3 84470846 84471100 + 1 NA Intergenic HERVL-int|LTR|ERVL 398602 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 250.667-42 chr8 18585923 18586230 + 1 NA intron (NM_015310, intron 12 of 15) intron (NM_015310, intron 12 of 15) 194794 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 163.667-47 chr5 132371381 132371717 + 1 NA intron (NM_003060, intron 1 of 9) intron (NM_003060, intron 1 of 9) -1633 NR_110997 553103 Hs.570908 NR_110997 ENSG00000233006 MIR3936HG SLC22A5-AS1 MIR3936 host gene ncRNA 234.167-9 chr12 23279832 23280181 + 1 NA Intergenic Intergenic 104370 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 256.667 chr1 40601623 40601907 + 1 NA Intergenic Intergenic 63917 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 338.833-4 chr4 141133654 141134282 + 1 NA promoter-TSS (NM_020724) promoter-TSS (NM_020724) -499 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 235.333-28 chr9 32539575 32539885 + 1 NA TTS (NM_005802) TTS (NM_005802) -11414 NM_001349118 100129250 Hs.664395 NM_001349118 ENSG00000235453 SMIM27 C9orf133|TOPORS-AS1 small integral membrane protein 27 protein-coding 283.5-13 chr5 131878824 131879235 + 1 NA exon (NM_001303622, exon 9 of 13) exon (NM_001303622, exon 9 of 13) 66634 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 227.333-33 chr7 46788419 46788941 + 1 NA Intergenic L1M4b|LINE|L1 -91558 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 175.833-12 chr11 39063314 39063511 + 1 NA Intergenic Intergenic 414554 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 209.333-31 chr5 36230573 36230809 + 1 NA intron (NM_001287341, intron 1 of 12) intron (NM_001287341, intron 1 of 12) 10700 NM_001287340 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 186.167-16 chr22 34879053 34879283 + 1 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 118748 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 168.333-31 chr2 28652290 28652628 + 1 NA Intergenic Charlie7|DNA|hAT-Charlie 83746 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 237.667-15 chr18 621507 621879 + 1 NA intron (NM_199167, intron 3 of 8) intron (NM_199167, intron 3 of 8) 4993 NM_199167 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 182.667-29 chr2 232684963 232685232 + 1 NA Intergenic L1MC2|LINE|L1 -12234 NM_001103146 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 164.333-22 chr18 23516095 23516328 + 1 NA intron (NM_001318707, intron 3 of 16) intron (NM_001318707, intron 3 of 16) 12700 NM_013326 29919 Hs.464779 NM_013326 ENSG00000141452 RMC1 C18orf8|HsT2591|MIC1|Mic-1|WDR98 regulator of MON1-CCZ1 protein-coding 196.833-9 chr15 86767575 86768088 + 1 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -165049 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 431.167 chr16 13110051 13110686 + 1 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 208770 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 227.333-34 chr7 88016355 88016651 + 1 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 82252 NM_001324417 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 283.5-16 chr8 127607636 127607947 + 1 NA Intergenic L2a|LINE|L2 -125652 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 235.333-19 chr4 40057685 40058031 + 1 NA promoter-TSS (NR_027277) promoter-TSS (NR_027277) -659 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 210.833-10 chr14 74012462 74012951 + 1 NA intron (NM_001321986, intron 2 of 16) MER102b|DNA|hAT-Charlie 6582 NM_001249 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 264.5-13 chr2 102755234 102755522 + 1 NA intron (NM_001321346, intron 1 of 3) intron (NM_001321346, intron 1 of 3) -6653 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 169.333-51 chr5 127561938 127562143 + 1 NA Intergenic Intergenic 44400 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 223.5-21 chr5 88116291 88116581 + 1 NA Intergenic Intergenic 152409 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 217.333-19 chr2 56795633 56795963 + 1 NA Intergenic Intergenic -610028 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 175.333-48 chr6 127606218 127606476 + 1 NA Intergenic L1M1|LINE|L1 29173 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 224.667-6 chr10 16105817 16106208 + 1 NA Intergenic Intergenic -245479 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 246.5-32 chr8 99548432 99548796 + 1 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) -11753 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 164.5-54 chr8 89084389 89084833 + 1 NA Intergenic L1M3|LINE|L1 673100 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 414.667-7 chr5 9544403 9545106 + 1 NA intron (NM_003966, intron 1 of 22) CpG 1321 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 179.333-35 chr3 132438917 132439105 + 1 NA intron (NM_001329126, intron 2 of 56) intron (NM_001329126, intron 2 of 56) 21509 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 228.5-2 chr10 66725568 66725907 + 1 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -200299 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 185.5-19 chr16 80158636 80158945 + 1 NA intron (NR_120307, intron 4 of 5) MIR|SINE|MIR 363541 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 234.333-26 chr3 136751228 136751798 + 1 NA intron (NM_005862, intron 1 of 33) intron (NM_005862, intron 1 of 33) 865 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 194.667 chr1 14430781 14431228 + 1 NA Intergenic Intergenic -11031 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 172.5-32 chr20 54042282 54042657 + 1 NA intron (NM_001366297, intron 3 of 8) L1ME4b|LINE|L1 16551 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 221.333-6 chr14 68700655 68700937 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -72009 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 384.333-4 chr14 58747420 58747991 + 1 NA Intergenic Intergenic -80583 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 272.5-13 chr17 31389508 31389819 + 1 NA Intergenic Intergenic -2012 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 186.833-17 chr5 79942099 79942306 + 1 NA intron (NR_131226, intron 1 of 2) intron (NR_131226, intron 1 of 2) 5623 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 173.333-31 chr7 122095364 122095688 + 1 NA intron (NM_005763, intron 15 of 23) intron (NM_005763, intron 15 of 23) 48723 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 199.5-21 chr18 8143876 8144108 + 1 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 223042 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 222.167-25 chr2 240336217 240336549 + 1 NA Intergenic HAL1M8|LINE|L1 -99280 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 194.5-48 chr8 136223996 136224289 + 1 NA Intergenic L1MCc|LINE|L1 -306656 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 355.833-9 chr4 132215928 132216464 + 1 NA Intergenic Intergenic -374893 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 195.333-10 chr12 123621840 123622124 + 1 NA intron (NM_001414, intron 8 of 8) intron (NM_001414, intron 8 of 8) 5272 NR_145743 109616977 NR_145743 ENSG00000206897 SNORA9B - small nucleolar RNA, H/ACA box 9B snoRNA 243.667-6 chr12 65314825 65315081 + 1 NA intron (NM_001031679, intron 2 of 6) intron (NM_001031679, intron 2 of 6) 35966 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 198.167-16 chr2 47437077 47437420 + 1 NA intron (NM_000251, intron 7 of 15) intron (NM_000251, intron 7 of 15) 34181 NM_001258281 4436 Hs.597656 NM_000251 ENSG00000095002 MSH2 COCA1|FCC1|HNPCC|HNPCC1|LCFS2|hMSH2 mutS homolog 2 protein-coding 285.5-14 chr2 70248642 70249048 + 1 NA promoter-TSS (NM_001351517) promoter-TSS (NM_001351517) -52 NM_001351511 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 249.5-9 chr2 98993672 98994096 + 1 NA Intergenic Intergenic -57659 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 256.667-16 chr20 14057158 14057485 + 1 NA intron (NM_001351663, intron 2 of 17) L1ME3A|LINE|L1 61805 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 213.167-34 chrX 99613751 99613995 + 1 NA Intergenic Intergenic 796400 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 187.667-7 chr11 1820107 1820351 + 1 NA Intergenic L1MC5a|LINE|L1 -14198 NM_001290334 90019 Hs.161031 NM_138567 ENSG00000149043 SYT8 - synaptotagmin 8 protein-coding 163.833-32 chr4 70328037 70328249 + 1 NA Intergenic Intergenic -6838 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 217.167-24 chr6 78788960 78789308 + 1 NA Intergenic MLT2F|LTR|ERVL -78417 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 252.667-6 chr10 22332378 22332720 + 1 NA Intergenic Intergenic 11450 NM_005180 648 Hs.380403 NM_005180 ENSG00000168283 BMI1 FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 BMI1 proto-oncogene, polycomb ring finger protein-coding 340.833-5 chr20 55417718 55418254 + 1 NA Intergenic Intergenic -5057 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 329.167-16 chr8 107771977 107772596 + 1 NA Intergenic Intergenic -274368 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 170.667-17 chr17 68733746 68733958 + 1 NA Intergenic LTR19C|LTR|ERV1 105698 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 221.333-11 chr2 73504104 73504497 + 1 NA intron (NM_015120, intron 10 of 22) L1MD2|LINE|L1 47197 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 352.667-11 chr8 130163563 130163974 + 1 NA intron (NM_001362925, intron 11 of 29) intron (NM_001362925, intron 11 of 29) -79000 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 178.333-40 chr7 141012445 141012693 + 1 NA intron (NM_053035, intron 1 of 2) Tigger16a|DNA|TcMar-Tigger 2110 NM_016071 51650 Hs.416207 NM_016071 ENSG00000090263 MRPS33 CGI-139|MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 322.333-3 chr11 32563140 32563786 + 1 NA Intergenic Intergenic -20368 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 172.667-48 chr5 119697627 119698010 + 1 NA Intergenic L1M2|LINE|L1 68259 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 211.5-34 chr4 41655889 41656159 + 1 NA intron (NM_001330786, intron 10 of 22) intron (NM_001330786, intron 10 of 22) 43122 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 217.833-20 chr8 123926055 123926289 + 1 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 74185 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 208.333-26 chr3 78107369 78107686 + 1 NA Intergenic Intergenic -58564 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 200.833-27 chr7 82807821 82808320 + 1 NA intron (NM_033026, intron 20 of 24) intron (NM_033026, intron 20 of 24) 354814 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 306.667-14 chr2 240013319 240013718 + 1 NA non-coding (NR_136156, exon 5 of 8) non-coding (NR_136156, exon 5 of 8) 11824 NM_004544 4705 Hs.277677 NM_004544 ENSG00000130414 NDUFA10 CI-42KD|CI-42k|MC1DN22 NADH:ubiquinone oxidoreductase subunit A10 protein-coding 163.667 chr1 20614096 20614441 + 1 NA intron (NM_001785, intron 3 of 3) L2a|LINE|L2 -19190 NM_032409 65018 Hs.389171 NM_032409 ENSG00000158828 PINK1 BRPK|PARK6 PTEN induced kinase 1 protein-coding 178.333-16 chr16 80827865 80828089 + 1 NA TTS (NR_131947) TTS (NR_131947) -23379 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 378.667 chr1 46182851 46183680 + 1 NA intron (NM_005727, intron 3 of 8) intron (NM_005727, intron 3 of 8) -6777 NM_001303427 110117499 Hs.655387 NM_001303427 ENSG00000278139 LOC110117498-PIK3R3 - LOC110117498-PIK3R3 readthrough protein-coding 172.667-7 chr10 68212871 68213102 + 1 NA TTS (NM_032578) TTS (NM_032578) 19127 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 240.667-32 chr7 29348546 29349088 + 1 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -130895 NR_120525 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 229.667-43 chr7 123749230 123749686 + 1 NA promoter-TSS (NM_003941) promoter-TSS (NM_003941) -455 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB WASP like actin nucleation promoting factor protein-coding 171.333-11 chr12 76072537 76072914 + 1 NA intron (NM_001330231, intron 2 of 15) HAL1|LINE|L1 11960 NM_001307924 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 343.333-5 chr13 21522525 21523129 + 1 NA intron (NM_152726, intron 4 of 11) intron (NM_152726, intron 4 of 11) -63457 NM_001286638 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 230.333-34 chr9 84671910 84672177 + 1 NA promoter-TSS (NM_001369535) promoter-TSS (NM_001369535) -48 NM_001369550 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 169.333-61 chr8 60655954 60656331 + 1 NA Intergenic Intergenic -22598 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 376.333-13 chr8 88993785 88994388 + 1 NA Intergenic Intergenic -666603 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 203.667-20 chr18 13903934 13904259 + 1 NA intron (NM_001291911, intron 1 of 1) AluYf1|SINE|Alu 11440 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 189.667-37 chr3 192128382 192128577 + 1 NA Intergenic Intergenic -110151 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 270.167-16 chr8 129225107 129225642 + 1 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 15866 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 203.167-10 chr17 57779732 57780122 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -34628 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 280.333-8 chr14 45084016 45084472 + 1 NA 5' UTR (NM_017922, exon 1 of 14) 5' UTR (NM_017922, exon 1 of 14) 128 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 343.833-3 chr13 54913029 54913520 + 1 NA Intergenic L1PA15-16|LINE|L1 -261180 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 245.333-6 chr12 39175417 39175877 + 1 NA Intergenic MER1A|DNA|hAT-Charlie 267473 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 251.5-29 chr8 93361325 93361639 + 1 NA intron (NR_033858, intron 10 of 10) intron (NR_033858, intron 10 of 10) -194632 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 194.833-3 chr11 60165790 60166129 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 17372 NM_152851 64231 Hs.523702 NM_022349 ENSG00000110077 MS4A6A 4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090 membrane spanning 4-domains A6A protein-coding 169.333-15 chr10 104117612 104117869 + 1 NA Intergenic Intergenic -4318 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 179.667-36 chr5 15463104 15463283 + 1 NA Intergenic L1M3f|LINE|L1 -36987 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 172.667-44 chr5 4247920 4248168 + 1 NA Intergenic L1MC5a|LINE|L1 -525437 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 168.5-22 chr17 58001625 58002090 + 1 NA non-coding (NR_034041, exon 4 of 4) non-coding (NR_034041, exon 4 of 4) 5389 NM_001078166 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 182.167-24 chr5 45794487 45794693 + 1 NA Intergenic MER50|LTR|ERV1 -98210 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 344.5-13 chr5 114193834 114194211 + 1 NA Intergenic L1MB8|LINE|L1 -168048 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 422.5-6 chr22 28245439 28246234 + 1 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -214033 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 312.667-16 chr4 36181396 36182038 + 1 NA intron (NR_146894, intron 8 of 32) L2a|LINE|L2 62222 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 298.833-7 chr18 5584430 5585281 + 1 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) -40516 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 215.167-27 chr5 133570571 133571056 + 1 NA intron (NM_015082, intron 2 of 15) L1ME3A|LINE|L1 41728 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 317.333-10 chr3 30433560 30433881 + 1 NA Intergenic MLT1H2|LTR|ERVL-MaLR -85148 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 193.667-20 chr15 65176226 65176437 + 1 NA intron (NM_006660, intron 3 of 13) intron (NM_006660, intron 3 of 13) 9011 NR_133680 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 235.667-18 chr2 171815614 171815973 + 1 NA intron (NR_047549, intron 8 of 16) intron (NR_047549, intron 8 of 16) 78451 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 199.5-51 chrX 69286146 69286401 + 1 NA Intergenic Intergenic 106716 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 303.333-13 chr5 8075581 8076117 + 1 NA Intergenic L2a|LINE|L2 206701 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 275.333-18 chr8 39898300 39898863 + 1 NA Intergenic L1MA4|LINE|L1 -15310 NM_002164 3620 Hs.840 NM_002164 ENSG00000131203 IDO1 IDO|IDO-1|INDO indoleamine 2,3-dioxygenase 1 protein-coding 267.167-12 chr7 112450465 112450873 + 1 NA non-coding (NR_120333, exon 1 of 12) non-coding (NR_120333, exon 1 of 12) 161 NR_120333 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 263.333-30 chr9 30289849 30290165 + 1 NA Intergenic L1MD2|LINE|L1 118447 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 364.5 chr1 10070371 10071035 + 1 NA intron (NM_006048, intron 1 of 26) intron (NM_006048, intron 1 of 26) 37745 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 222.667-3 chr1 171022980 171023400 + 1 NA intron (NM_001163629, intron 17 of 21) FRAM|SINE|Alu -67715 NM_001002294 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 164.667-5 chr1 185443683 185444215 + 1 NA Intergenic Intergenic -108910 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 306.333-5 chr2 68521390 68522012 + 1 NA intron (NM_173545, intron 5 of 9) intron (NM_173545, intron 5 of 9) 54116 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 231.5-19 chr17 66735199 66735469 + 1 NA intron (NM_002737, intron 9 of 16) intron (NM_002737, intron 9 of 16) -51738 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 193.333 chr1 93373781 93374137 + 1 NA Intergenic Intergenic 28052 NM_001938 1810 Hs.348418 NM_001938 ENSG00000117505 DR1 NC2|NC2-BETA|NC2B|NCB2 down-regulator of transcription 1 protein-coding 240.667-16 chr15 90929824 90930182 + 1 NA promoter-TSS (NM_001039675) promoter-TSS (NM_001039675) -177 NM_001039675 55898 Hs.389461 NM_017979 ENSG00000140553 UNC45A GC-UNC45|GCUNC-45|GCUNC45|IRO039700|SMAP-1|SMAP1|UNC-45A unc-45 myosin chaperone A protein-coding 174.167-46 chr9 28303716 28303972 + 1 NA intron (NM_001354574, intron 4 of 5) Tigger2|DNA|TcMar-Tigger 415461 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 164.167-52 chr8 121406656 121407050 + 1 NA Intergenic Intergenic -232493 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 173.5-9 chr10 52339319 52339694 + 1 NA Intergenic MER58B|DNA|hAT-Charlie 25225 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 282.333-9 chr3 101819555 101820167 + 1 NA intron (NR_145993, intron 6 of 6) L1MA7|LINE|L1 -8129 NM_001005474 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 225.667-18 chr2 27086103 27086655 + 1 NA promoter-TSS (NM_006488) promoter-TSS (NM_006488) -393 NM_006488 3795 Hs.567297 NM_000221 ENSG00000138030 KHK - ketohexokinase protein-coding 307.333-6 chr14 71637689 71638213 + 1 NA intron (NM_001354286, intron 8 of 24) L1MDa|LINE|L1 51653 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 169.833-34 chr4 105835086 105835680 + 1 NA intron (NM_001370181, intron 9 of 11) MER52A|LTR|ERV1 -8211 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 233.5-19 chr2 231497807 231498143 + 1 NA Intergenic L1MB8|LINE|L1 16364 NR_024079 151477 Hs.375211 NM_173513 ENSG00000181798 LINC00471 C2orf52 long intergenic non-protein coding RNA 471 ncRNA 185.667-5 chr1 223127747 223127977 + 1 NA intron (NM_003268, intron 5 of 5) intron (NM_003268, intron 5 of 5) 15386 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 205.667-13 chr13 81374462 81375053 + 1 NA Intergenic Intergenic -147774 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 199.167-25 chr6 115545286 115545710 + 1 NA Intergenic L1PA10|LINE|L1 98337 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 207.833-8 chr18 32072706 32072987 + 1 NA 3' UTR (NM_017831, exon 6 of 6) 3' UTR (NM_017831, exon 6 of 6) -19028 NM_016271 51444 Hs.302408 NM_016271 ENSG00000134758 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138 protein-coding 183.667-17 chr15 59933302 59933727 + 1 NA Intergenic Intergenic -70797 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 260.667-29 chr2 74197226 74197674 + 1 NA Intergenic AluSq|SINE|Alu -1113 NR_027405 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 187.5-9 chr10 29019568 29019783 + 1 NA Intergenic Intergenic 173267 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 235.333-15 chr3 46529512 46529912 + 1 NA intron (NM_024512, intron 6 of 8) intron (NM_024512, intron 6 of 8) -27686 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 204.667-7 chr11 23021268 23021544 + 1 NA Intergenic Intergenic -160932 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 245.667-15 chr22 26370503 26370921 + 1 NA intron (NM_001184775, intron 13 of 15) (A)n|Simple_repeat|Simple_repeat -58548 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 174.667-13 chr12 120490071 120490539 + 1 NA TTS (NR_038854) TTS (NR_038854) 5641 NR_038854 100506668 Hs.660080 NR_038854 ENSG00000248008 NRAV DYNLL1-AS1|DYNLL1AS1 negative regulator of antiviral response ncRNA 185.5-32 chr5 36762998 36763273 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 113559 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 191.5-5 chr10 15183595 15183931 + 1 NA Intergenic MIRb|SINE|MIR -15070 NM_004808 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 166.333-40 chr3 61656619 61656807 + 1 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 95142 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 207.5-10 chr12 80106484 80106838 + 1 NA intron (NM_001368062, intron 1 of 62) intron (NM_001368062, intron 1 of 62) 7124 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 292.333-17 chr22 40344897 40345267 + 1 NA Intergenic AluJo|SINE|Alu -1418 NM_000026 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 268.5-21 chr3 45666867 45667326 + 1 NA intron (NM_014240, intron 3 of 7) MLT1K|LTR|ERVL-MaLR 21786 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 188.333-3 chr1 93770755 93771057 + 1 NA intron (NR_148965, intron 1 of 1) intron (NR_148965, intron 1 of 1) 4477 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 165.667-25 chr17 11795584 11795817 + 1 NA intron (NM_001372, intron 42 of 68) intron (NM_001372, intron 42 of 68) -87202 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 229.333-6 chr11 10303572 10303827 + 1 NA Intergenic Intergenic -1374 NM_001124 133 Hs.441047 NM_001124 ENSG00000148926 ADM AM|PAMP adrenomedullin protein-coding 181.667-15 chr14 76032943 76033171 + 1 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 47294 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 239.667-29 chr3 100493318 100493871 + 1 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 975 NM_001363876 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 284.333-2 chr1 246416581 246416878 + 1 NA intron (NM_001167740, intron 1 of 11) LTR48|LTR|ERV1 683 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 204.667-23 chr2 70950084 70950428 + 1 NA intron (NM_001692, intron 2 of 13) L1M5|LINE|L1 -1645 NR_110274 101927750 Hs.676120 NR_110273 ENSG00000239322 ATP6V1B1-AS1 - ATP6V1B1 antisense RNA 1 ncRNA 220.333-24 chr5 141120328 141120634 + 1 NA Intergenic Intergenic -1337 NM_018938 56131 Hs.591250 NM_018938 ENSG00000081818 PCDHB4 PCDH-BETA4 protocadherin beta 4 protein-coding 207.167-24 chr6 63344819 63345037 + 1 NA Intergenic Intergenic -24945 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 311.5-17 chr5 154405346 154405818 + 1 NA intron (NM_198321, intron 8 of 11) intron (NM_198321, intron 8 of 11) 40240 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 184.5-24 chr2 189096455 189096834 + 1 NA intron (NM_000393, intron 6 of 53) AluY|SINE|Alu 36467 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 313.333-19 chr7 130745714 130746082 + 1 NA Intergenic L1M5|LINE|L1 -11865 NM_138693 136259 Hs.125240 NM_138693 ENSG00000266265 KLF14 BTEB5 Kruppel like factor 14 protein-coding 301.5-5 chr12 16890872 16891431 + 1 NA Intergenic Intergenic -97596 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 332.333-14 chr8 122347922 122348530 + 1 NA Intergenic Intergenic 220418 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 182.667-2 chr1 91998893 91999347 + 1 NA intron (NM_001726, intron 15 of 18) L2|LINE|L2 -30865 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 167.333-20 chr12 39025952 39026405 + 1 NA Intergenic Intergenic -120587 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 191.5-28 chr2 231298114 231298476 + 1 NA intron (NM_001352759, intron 19 of 19) intron (NM_001352759, intron 19 of 19) -64413 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 192.333-49 chr7 45924024 45924244 + 1 NA Intergenic Intergenic -2862 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 205.667-11 chr12 113312481 113312747 + 1 NA intron (NM_001358345, intron 11 of 15) intron (NM_001358345, intron 11 of 15) 21091 NR_106820 102465457 NR_106820 ENSG00000274822 MIR6762 hsa-mir-6762 microRNA 6762 ncRNA 249.5-21 chr5 132478784 132479239 + 1 NA Intergenic Intergenic 11762 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 164.333-25 chr19 48271084 48271371 + 1 NA promoter-TSS (NM_001331098) promoter-TSS (NM_001331098) -18 NM_001331098 163071 Hs.511883 NM_153608 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 195.167-26 chr2 108067307 108067580 + 1 NA Intergenic Intergenic -14688 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 232.667-28 chr4 169648442 169648963 + 1 NA intron (NM_173872, intron 2 of 13) L2c|LINE|L2 -11360 NM_001243374 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 254.167-13 chr17 39527187 39527680 + 1 NA intron (NM_015083, intron 13 of 13) intron (NM_015083, intron 13 of 13) 65947 NM_015083 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding 388.167-2 chr14 70973754 70974317 + 1 NA intron (NM_014982, intron 5 of 35) L1MB7|LINE|L1 66576 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 276.333 chr1 246087079 246087496 + 1 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 330125 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 203.667-5 chr1 182254316 182254608 + 1 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 59599 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 277.167-9 chr22 38766341 38766835 + 1 NA Intergenic Intergenic -10590 NM_015374 25777 Hs.517622 NM_015374 ENSG00000100242 SUN2 UNC84B Sad1 and UNC84 domain containing 2 protein-coding 248.833-8 chr11 8572401 8572948 + 1 NA intron (NM_001289058, intron 1 of 13) FLAM_C|SINE|Alu 21302 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 201.333-31 chr22 34727238 34727510 + 1 NA Intergenic L1MA10|LINE|L1 270542 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 251.5 chr1 82058635 82059069 + 1 NA Intergenic MIR|SINE|MIR 256399 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 179.667-30 chr4 30473691 30474006 + 1 NA Intergenic Intergenic -246521 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 187.5-2 chr1 34559064 34559311 + 1 NA Intergenic Intergenic 110507 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 217.333-42 chr7 116123202 116123588 + 1 NA Intergenic Intergenic -87144 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 219.833-9 chr14 30269976 30270198 + 1 NA Intergenic L2c|LINE|L2 -289036 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 188.5-48 chr7 26407209 26407515 + 1 NA intron (NR_148503, intron 2 of 6) intron (NR_148503, intron 2 of 6) -7944 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 201.5-4 chr10 12219289 12219621 + 1 NA intron (NM_006023, intron 6 of 12) intron (NM_006023, intron 6 of 12) 23267 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 282.667-19 chr20 58087489 58087866 + 1 NA Intergenic Helitron3Na_Mam|RC|Helitron -63225 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 181.833-11 chr2 32595268 32595607 + 1 NA intron (NM_016252, intron 68 of 73) intron (NM_016252, intron 68 of 73) -20619 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 165.667-26 chr17 62030640 62030955 + 1 NA intron (NM_005121, intron 6 of 29) intron (NM_005121, intron 6 of 29) 34481 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 299.167-21 chrX 9474217 9474916 + 1 NA intron (NM_005647, intron 1 of 17) intron (NM_005647, intron 1 of 17) 9508 NM_005647 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1 X-linked protein-coding 320.5-6 chr12 5083925 5084639 + 1 NA Intergenic Intergenic 40403 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 201.667-10 chr13 29489414 29489689 + 1 NA intron (NM_015233, intron 4 of 8) intron (NM_015233, intron 4 of 8) -1801 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 164.5-17 chr15 53737859 53738150 + 1 NA intron (NR_102334, intron 1 of 19) L1MEd|LINE|L1 21659 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 219.167-2 chr10 77711639 77711991 + 1 NA Intergenic Intergenic -74007 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 295.5-18 chrX 49184556 49184917 + 1 NA intron (NM_006150, intron 1 of 8) intron (NM_006150, intron 1 of 8) 157 NM_001307979 4007 Hs.732712 NM_006150 ENSG00000012211 PRICKLE3 LMO6|Pk3 prickle planar cell polarity protein 3 protein-coding 260.667-17 chr16 81261261 81261642 + 1 NA intron (NM_017429, intron 3 of 10) Charlie19a|DNA|hAT-Charlie 22762 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 238.333-26 chr22 47125336 47125751 + 1 NA intron (NM_001284305, intron 12 of 12) intron (NM_001284305, intron 12 of 12) -209501 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 200.667-5 chr10 6669426 6669675 + 1 NA Intergenic Intergenic 34480 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 216.5-38 chr5 133263275 133263763 + 1 NA intron (NM_015082, intron 6 of 15) L2-3_Crp|LINE|L2 164187 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 188.5-18 chr16 22310137 22310336 + 1 NA intron (NR_047581, intron 6 of 20) Tigger3b|DNA|TcMar-Tigger 12827 NM_001258036 55718 Hs.460298 NM_018119 ENSG00000058600 POLR3E RPC5|SIN RNA polymerase III subunit E protein-coding 269.833-9 chr5 94126202 94126480 + 1 NA Intergenic AluYa5|SINE|Alu -14642 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 314.5-16 chr5 140836790 140837190 + 1 NA TTS (NM_031852) TTS (NM_031852) 2606 NM_031852 56141 Hs.199343 NM_018910 ENSG00000204963 PCDHA7 CNR4|CNRN4|CNRS4|CRNR4|PCDH-ALPHA7 protocadherin alpha 7 protein-coding 216.167-3 chr1 206470465 206470713 + 1 NA 5' UTR (NM_014002, exon 1 of 22) 5' UTR (NM_014002, exon 1 of 22) 113 NM_001193322 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of nuclear factor kappa B kinase subunit epsilon protein-coding 181.333-37 chr7 1442952 1443209 + 1 NA intron (NM_182924, intron 6 of 16) intron (NM_182924, intron 6 of 16) 16390 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 230.667-3 chr11 70016958 70017351 + 1 NA Intergenic Intergenic 46770 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 279.5-20 chr4 183470053 183470436 + 1 NA Intergenic Charlie6|DNA|hAT-Charlie 25608 NM_017632 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 227.167-11 chr17 81881063 81881306 + 1 NA Intergenic Intergenic -9606 NM_001289414 51529 Hs.534456 NM_016476 ENSG00000141552 ANAPC11 APC11|Apc11p|HSPC214 anaphase promoting complex subunit 11 protein-coding 321.667-4 chr17 76726212 76726836 + 1 NA promoter-TSS (NM_001081461) promoter-TSS (NM_001081461) 82 NM_001081461 23210 Hs.514505 NM_015167 ENSG00000070495 JMJD6 PSR|PTDSR|PTDSR1 jumonji domain containing 6, arginine demethylase and lysine hydroxylase protein-coding 169.833-42 chr8 78041976 78042145 + 1 NA Intergenic Intergenic -474280 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 234.5-41 chr9 114107890 114108351 + 1 NA Intergenic Intergenic -9063 NM_138424 113220 Hs.28149 NM_138424 ENSG00000136883 KIF12 - kinesin family member 12 protein-coding 281.333-12 chr16 82891849 82892235 + 1 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 98256 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 184.333-23 chr2 171078430 171078626 + 1 NA intron (NM_012290, intron 3 of 20) AluSg|SINE|Alu -11555 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 349.833-7 chr22 28541515 28542133 + 1 NA intron (NM_001145418, intron 2 of 22) AluJo|SINE|Alu 81955 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 194.667-5 chr1 209344304 209344612 + 1 NA Intergenic OldhAT1|DNA|hAT-Ac 19002 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 240.333-23 chr7 138879004 138879326 + 1 NA intron (NM_020910, intron 12 of 19) L3b|LINE|CR1 -80969 NM_130840 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 226.667-17 chr17 15384485 15384811 + 1 NA Intergenic MIR3|SINE|MIR -43051 NM_031898 64518 Hs.414648 NM_031898 ENSG00000125409 TEKT3 - tektin 3 protein-coding 204.833-25 chr6 68694005 68694241 + 1 NA intron (NM_001704, intron 3 of 31) CR1_Mam|LINE|CR1 58841 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 179.333 chr1 8816266 8816548 + 1 NA intron (NM_012102, intron 1 of 23) intron (NM_012102, intron 1 of 23) 1233 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 178.333-12 chr12 130049278 130049621 + 1 NA Intergenic Intergenic -7107 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 192.333-35 chr3 69293300 69293501 + 1 NA intron (NM_015123, intron 4 of 22) intron (NM_015123, intron 4 of 22) 92688 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 164.667-48 chr6 44689227 44689405 + 1 NA Intergenic AluSp|SINE|Alu -137435 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 245.667-29 chr9 73790806 73791129 + 1 NA Intergenic Intergenic -580564 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 193.833-29 chr8 63686689 63687003 + 1 NA Intergenic Intergenic -82584 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 173.5-36 chr2 222841715 222842124 + 1 NA Intergenic Intergenic -19117 NM_203372 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 221.333-24 chr5 84141629 84141909 + 1 NA intron (NM_001278642, intron 3 of 9) intron (NM_001278642, intron 3 of 9) 243098 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 212.333-5 chr10 43996683 43997005 + 1 NA Intergenic Intergenic 84442 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 211.5-19 chr15 84737621 84738014 + 1 NA Intergenic L1M5|LINE|L1 -10775 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 180.5-32 chr4 155319914 155320133 + 1 NA Intergenic Intergenic -34193 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 270.667 chr1 77424127 77424470 + 1 NA intron (NM_012093, intron 8 of 13) AluJo|SINE|Alu 141211 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 281.5-14 chr3 185745331 185745924 + 1 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 22277 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 210.333-5 chr1 203144693 203145038 + 1 NA intron (NM_001365066, intron 2 of 2) intron (NM_001365066, intron 2 of 2) 17139 NM_000674 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 294.833-5 chr16 84836140 84836623 + 1 NA intron (NM_031476, intron 1 of 14) intron (NM_031476, intron 1 of 14) 16396 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 208.5 chr1 171019310 171019711 + 1 NA intron (NM_001163629, intron 17 of 21) AluSg7|SINE|Alu -71395 NM_001002294 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 231.5-11 chr14 50411914 50412266 + 1 NA Intergenic AluSq|SINE|Alu -14792 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 197.333-23 chr21 28855609 28855970 + 1 NA Intergenic L1PA13|LINE|L1 29578 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 238.333-27 chr3 94586692 94587033 + 1 NA Intergenic L2c|LINE|L2 -351401 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 303.833-5 chr17 56320100 56320694 + 1 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 166922 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 236.667-23 chr5 30621548 30622007 + 1 NA Intergenic L1ME2|LINE|L1 -571909 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 303.667-2 chr10 51654129 51654584 + 1 NA intron (NM_001098512, intron 3 of 17) L1MA7|LINE|L1 45239 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 209.5-9 chr13 41327291 41327580 + 1 NA intron (NM_001110798, intron 6 of 10) intron (NM_001110798, intron 6 of 10) -15397 NM_001354074 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 194.667-31 chr18 9562998 9563480 + 1 NA intron (NR_052003, intron 11 of 19) intron (NR_052003, intron 11 of 19) 51320 NR_052003 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 243.667-27 chr2 221373545 221373986 + 1 NA Intergenic AluSz6|SINE|Alu 198539 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 264.667-12 chr4 70721745 70722246 + 1 NA promoter-TSS (NM_001291994) promoter-TSS (NM_001291994) 31 NM_014961 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 171.5-29 chr2 226991696 226991964 + 1 NA intron (NM_001349069, intron 8 of 8) MIR3|SINE|MIR 155776 NM_001349071 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 165.667-21 chr15 34916961 34917169 + 1 NA intron (NM_014691, intron 15 of 34) L1ME3B|LINE|L1 52677 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 216.333-35 chr5 76337708 76338075 + 1 NA intron (NM_001297716, intron 12 of 12) intron (NM_001297716, intron 12 of 12) -65394 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 251.833-9 chr22 42621383 42621787 + 1 NA intron (NM_007326, intron 8 of 8) intron (NM_007326, intron 8 of 8) 6340 NR_029422 267010 Hs.574857 NR_029422 ENSG00000276027 RNU12 RNU12-1|RNU12L|RNU12P|dJ222E13.7 RNA, U12 small nuclear snRNA 189.833-22 chr9 29887229 29887813 + 1 NA Intergenic Intergenic 520933 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 323.5-12 chr3 33192412 33192825 + 1 NA intron (NM_015551, intron 3 of 4) AluSz6|SINE|Alu 26192 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 234.5-23 chr2 107002389 107002885 + 1 NA Intergenic Intergenic -115528 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 233.5-6 chr10 113216290 113216526 + 1 NA Intergenic L1ME4a|LINE|L1 87137 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 170.667-28 chr22 25017277 25017668 + 1 NA Intergenic MER66B|LTR|ERV1 -10502 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 195.167-35 chr7 20998018 20998555 + 1 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 162855 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 192.667-11 chr16 60250919 60251261 + 1 NA Intergenic HERV35I-int|LTR|ERV1 108703 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 233.667-4 chr10 111552947 111553367 + 1 NA Intergenic MIR|SINE|MIR 438866 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 247.5-39 chr5 149189742 149190001 + 1 NA intron (NM_001370418, intron 2 of 18) L1MB8|LINE|L1 48140 NM_001370417 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 247.667-16 chr19 9205636 9205973 + 1 NA Intergenic LTR13|LTR|ERVK 9067 NM_001005191 125958 Hs.446910 NM_001005191 ENSG00000174667 OR7D4 OR19-7|OR19-B|OR19B|OR7D4P|hg105 olfactory receptor family 7 subfamily D member 4 protein-coding 198.833-18 chr2 175225742 175226305 + 1 NA Intergenic L1MC5|LINE|L1 -44313 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 260.667-7 chr10 108660324 108660747 + 1 NA Intergenic Intergenic -591242 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 202.5-38 chr3 62774786 62775024 + 1 NA intron (NM_003716, intron 1 of 29) Charlie1a|DNA|hAT-Charlie 100511 NM_183394 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 439.667-2 chr22 46563289 46564229 + 1 NA Intergenic Intergenic -13329 NM_001366660 23151 Hs.475150 NM_015124 ENSG00000075240 GRAMD4 DIP GRAM domain containing 4 protein-coding 218.667-2 chr1 177032330 177032797 + 1 NA exon (NM_001286164, exon 3 of 23) exon (NM_001286164, exon 3 of 23) -3118 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 225.667-21 chr2 108014055 108014322 + 1 NA TTS (NM_001305007) TTS (NM_001305007) 27664 NM_021815 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 275.667-19 chr4 139014058 139014423 + 1 NA Intergenic Intergenic -1541 NM_012118 25819 Hs.639842 NM_012118 ENSG00000151014 NOCT CCR4L|CCRN4L|Ccr4c|NOC nocturnin protein-coding 227.333-37 chr8 29170076 29170637 + 1 NA intron (NM_015254, intron 10 of 39) MIR3|SINE|MIR 92714 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 292.5-14 chr20 54366171 54366527 + 1 NA Intergenic Intergenic -109244 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 178.667-22 chr2 58569610 58569907 + 1 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 49005 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 221.667-36 chr5 29525336 29525635 + 1 NA Intergenic Intergenic -129509 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 288.333-14 chr4 185224397 185224768 + 1 NA intron (NM_001317781, intron 1 of 18) intron (NM_001317781, intron 1 of 18) 20345 NM_001317781 83891 Hs.369091 NM_031953 ENSG00000109762 SNX25 MSTP043|SBBI31 sorting nexin 25 protein-coding 164.167-9 chr11 66087847 66088106 + 1 NA intron (NM_018026, intron 1 of 23) L1ME3A|LINE|L1 17704 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 265.667-12 chr15 77468689 77469202 + 1 NA intron (NM_001304505, intron 4 of 9) L1MC4|LINE|L1 48057 NM_001304504 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 227.667-6 chr10 64251351 64251765 + 1 NA Intergenic AluSz|SINE|Alu -573970 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 198.333-13 chr11 41578571 41579082 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger -119174 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 361.333-5 chr19 40420760 40421284 + 1 NA TTS (NM_013376) TTS (NM_013376) 4970 NM_013376 29950 Hs.269898 NM_013376 ENSG00000197019 SERTAD1 SEI1|TRIP-Br1|TRIPBR1 SERTA domain containing 1 protein-coding 221.333-14 chr2 199088616 199089108 + 1 NA Intergenic Intergenic 369077 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 343.5 chr1 164717746 164718305 + 1 NA intron (NM_001204963, intron 2 of 8) MIRb|SINE|MIR 56616 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 279.5-10 chr2 179261090 179261531 + 1 NA intron (NM_178123, intron 1 of 17) intron (NM_178123, intron 1 of 17) 3522 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 202.5-50 chr8 59685748 59686100 + 1 NA Intergenic Intergenic 566714 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 259.667-13 chr3 140244688 140245026 + 1 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 263932 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 193.333-40 chr21 29818359 29818676 + 1 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 70342 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 218.5-12 chr12 75053248 75053489 + 1 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 156380 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 229.667-10 chr14 51703870 51704273 + 1 NA intron (NM_001042481, intron 6 of 14) intron (NM_001042481, intron 6 of 14) -13212 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 327.833-4 chr2 165919336 165919754 + 1 NA intron (NM_024753, intron 12 of 28) intron (NM_024753, intron 12 of 28) -14312 NR_038983 100506134 Hs.672319 NR_038983 TTC21B-AS1 - TTC21B antisense RNA 1 ncRNA 177.333-13 chr17 53477605 53477992 + 1 NA Intergenic Intergenic -345129 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 511.333-3 chr10 119531804 119532674 + 1 NA intron (NM_001005339, intron 1 of 4) intron (NM_001005339, intron 1 of 4) 4294 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 191.833-8 chr17 58961366 58961716 + 1 NA intron (NR_048561, intron 2 of 5) intron (NR_048561, intron 2 of 5) 145339 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 163.333-20 chr15 44291903 44292188 + 1 NA intron (NR_157849, intron 1 of 9) MER103C|DNA|hAT-Charlie 3326 NM_177974 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility 4 protein-coding 298.667-5 chr11 25095773 25096380 + 1 NA Intergenic Intergenic 599023 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 208.833-10 chr16 67932076 67932465 + 1 NA promoter-TSS (NM_001907) promoter-TSS (NM_001907) -408 NM_001907 1506 Hs.654546 NM_001907 ENSG00000141086 CTRL CTRL1 chymotrypsin like protein-coding 332.667-10 chr2 113968561 113968920 + 1 NA promoter-TSS (NR_148507) promoter-TSS (NR_148507) -582 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 215.333-16 chr12 25068651 25068914 + 1 NA intron (NM_001366547, intron 6 of 22) MER21C|LTR|ERVL 16076 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 195.5-8 chr14 61587817 61588031 + 1 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -17271 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 189.333-15 chr14 54440670 54441007 + 1 NA intron (NM_005776, intron 1 of 4) intron (NM_005776, intron 1 of 4) 536 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 199.333-5 chr1 78884778 78885022 + 1 NA Intergenic MIR|SINE|MIR 121830 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 174.667-48 chr6 152051913 152052172 + 1 NA intron (NM_001122741, intron 6 of 8) MSTB|LTR|ERVL-MaLR 116245 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 184.5-40 chr4 58237500 58237734 + 1 NA Intergenic Intergenic 298711 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 434.167-6 chr9 130432880 130433593 + 1 NA intron (NM_001291815, intron 97 of 97) CpG -11471 NM_000050 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 373.333-7 chr16 46857011 46857687 + 1 NA Intergenic Intergenic -26169 NR_145834 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 345.167-11 chr8 83721447 83721817 + 1 NA Intergenic Intergenic 317874 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 225.333-18 chr17 29763213 29763554 + 1 NA intron (NM_033389, intron 2 of 14) intron (NM_033389, intron 2 of 14) -1951 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 293.333-14 chr20 35408625 35409059 + 1 NA intron (NM_001184977, intron 1 of 7) AluJo|SINE|Alu 3131 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 195.667-44 chr8 93414297 93414667 + 1 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) -247632 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 196.333-18 chr18 13738514 13738825 + 1 NA intron (NM_003799, intron 5 of 11) Charlie1a|DNA|hAT-Charlie 11996 NM_003799 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 188.5-11 chr11 78013830 78014034 + 1 NA Intergenic MER5B|DNA|hAT-Charlie 9344 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 442.5-2 chr2 170369342 170370108 + 1 NA intron (NM_001083615, intron 9 of 33) intron (NM_001083615, intron 9 of 33) -18782 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 361.167-9 chr9 131940454 131941024 + 1 NA intron (NM_001253881, intron 3 of 6) HAL1|LINE|L1 139128 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 287.833-7 chr17 81867195 81867643 + 1 NA TTS (NM_001301243) TTS (NM_001301243) 3578 NM_001185077 396 Hs.159161 NM_004309 ENSG00000141522 ARHGDIA GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1 Rho GDP dissociation inhibitor alpha protein-coding 195.667-7 chr10 123968304 123968749 + 1 NA Intergenic Intergenic -76719 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 233.833-12 chr22 45577525 45578124 + 1 NA intron (NM_006486, intron 16 of 16) intron (NM_006486, intron 16 of 16) 27823 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 279.333-6 chr12 10599348 10599858 + 1 NA non-coding (NR_028045, exon 1 of 7) non-coding (NR_028045, exon 1 of 7) 232 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 180.5-44 chr8 55898847 55899197 + 1 NA intron (NM_002350, intron 1 of 12) AluYc|SINE|Alu 3833 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 235.5-24 chr9 91514181 91514482 + 1 NA Intergenic Intergenic -89705 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 186.167-9 chr14 71711658 71712047 + 1 NA intron (NM_001354286, intron 18 of 24) intron (NM_001354286, intron 18 of 24) 125554 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 256.833-2 chr1 47423753 47424069 + 1 NA intron (NR_126355, intron 1 of 4) L1M5|LINE|L1 7626 NM_012186 2301 Hs.112968 NM_012186 ENSG00000186790 FOXE3 AAT11|ASGD2|CTRCT34|FKHL12|FREAC8 forkhead box E3 protein-coding 210.333-33 chr8 75399095 75399389 + 1 NA Intergenic Intergenic -8407 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 334.667-7 chr18 65567284 65567780 + 1 NA Intergenic Intergenic -182720 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 294.667-7 chr11 67554765 67555233 + 1 NA Intergenic AluSx1|SINE|Alu -28596 NM_000852 2950 Hs.523836 NM_000852 ENSG00000084207 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding 305.667-12 chr5 14505651 14505992 + 1 NA intron (NM_007118, intron 55 of 56) intron (NM_007118, intron 55 of 56) 41838 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 255.5-2 chr1 83882840 83883208 + 1 NA exon (NM_024686, exon 20 of 21) exon (NM_024686, exon 20 of 21) -22028 NR_119375 101927587 Hs.621230 NR_119375 ENSG00000233008 LINC01725 - long intergenic non-protein coding RNA 1725 ncRNA 213.833 chr1 94735103 94735394 + 1 NA intron (NR_160781, intron 1 of 4) intron (NR_160781, intron 1 of 4) 10652 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 264.333-12 chr18 35740202 35740534 + 1 NA Intergenic LTR68|LTR|ERV1 85799 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 204.667-36 chr7 25851566 25851777 + 1 NA Intergenic Intergenic -61552 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 195.5-10 chr15 56949649 56949982 + 1 NA intron (NM_207038, intron 3 of 19) L2c|LINE|L2 30370 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 325.333-17 chr9 20026390 20026849 + 1 NA Intergenic L1MA8|LINE|L1 -239600 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 273.167-12 chr5 91078621 91079082 + 1 NA intron (NR_003149, intron 86 of 89) MLT1G|LTR|ERVL-MaLR 235551 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 301.833-5 chr2 210965239 210965662 + 1 NA Intergenic Intergenic 347879 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 285.833-14 chr5 90558544 90558988 + 1 NA promoter-TSS (NM_032119) promoter-TSS (NM_032119) -31 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 337.5-6 chr7 19017179 19017600 + 1 NA Intergenic L1M4|LINE|L1 100247 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 183.833-2 chr1 114662849 114663057 + 1 NA intron (NM_001256404, intron 1 of 20) AluJr|SINE|Alu 7096 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 183.333-38 chr2 146694391 146694664 + 1 NA Intergenic AluJr|SINE|Alu 107470 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 234.667-30 chr7 47786294 47786915 + 1 NA intron (NM_138295, intron 56 of 56) intron (NM_138295, intron 56 of 56) -8687 NR_161268 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 174.667-57 chr8 95773072 95773381 + 1 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 175122 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 191.333-38 chr6 43109394 43109682 + 1 NA intron (NM_001270398, intron 1 of 19) L1ME4c|LINE|L1 32724 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 303.667-12 chr3 149788949 149789400 + 1 NA intron (NM_001144960, intron 2 of 5) intron (NM_001144960, intron 2 of 5) 3380 NM_001315506 389161 Hs.665988 NM_001144960 ENSG00000206199 ANKUB1 C3orf16 ankyrin repeat and ubiquitin domain containing 1 protein-coding 205.5-33 chr6 116279931 116280418 + 1 NA promoter-TSS (NR_136521) promoter-TSS (NR_136521) -57 NM_003309 7259 Hs.458358 NM_003309 ENSG00000189241 TSPYL1 TSPYL TSPY like 1 protein-coding 267.5-40 chr8 140358529 140359083 + 1 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 98938 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 253.5-8 chr12 3172341 3172709 + 1 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 95146 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 245.167-2 chr1 151172110 151172510 + 1 NA exon (NM_013353, exon 5 of 10) exon (NM_013353, exon 5 of 10) 3671 NM_013353 29765 Hs.709681 NM_013353 ENSG00000163157 TMOD4 SK-TMOD tropomodulin 4 protein-coding 247.667-28 chr3 193068385 193068785 + 1 NA Intergenic Intergenic -150729 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 196.5-26 chr22 24046320 24046535 + 1 NA intron (NM_012295, intron 6 of 36) intron (NM_012295, intron 6 of 36) 35057 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 233.333-4 chr11 17625637 17625990 + 1 NA intron (NM_001277269, intron 38 of 54) L1M1|LINE|L1 71126 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 203.333-67 chr9 77326370 77326682 + 1 NA intron (NM_001018038, intron 45 of 68) L1MEc|LINE|L1 -121123 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 289.333-15 chr2 129344225 129344762 + 1 NA Intergenic L1MB7|LINE|L1 -70602 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 193.167-35 chr9 34508200 34508480 + 1 NA intron (NM_001281428, intron 13 of 19) intron (NM_001281428, intron 13 of 19) 14650 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 185.5-9 chr11 59427491 59427743 + 1 NA Intergenic Intergenic -4664 NM_001001954 219981 Hs.553648 NM_001001954 ENSG00000172324 OR5A2 - olfactory receptor family 5 subfamily A member 2 protein-coding 190.5-11 chr13 25085093 25085336 + 1 NA Intergenic Intergenic -10924 NM_030979 5042 Hs.458280 NM_030979 ENSG00000151846 PABPC3 PABP3|PABPL3|tPABP poly(A) binding protein cytoplasmic 3 protein-coding 199.5-41 chr6 150327174 150327537 + 1 NA Intergenic Intergenic -41657 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 244.667-2 chr1 45359949 45360210 + 1 NA intron (NM_007170, intron 4 of 10) intron (NM_007170, intron 4 of 10) -19609 NM_001048171 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 315.333-2 chr1 68048432 68048878 + 1 NA intron (NM_004675, intron 3 of 3) intron (NM_004675, intron 3 of 3) 2976 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 313.333-8 chr12 108642754 108643252 + 1 NA Intergenic Intergenic 7193 NR_039717 100616240 NR_039717 ENSG00000284388 MIR4496 - microRNA 4496 ncRNA 359.5-3 chr14 70713979 70714820 + 1 NA Intergenic AluSx|SINE|Alu 15701 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 187.5-3 chr1 56173757 56173998 + 1 NA Intergenic L1MEc|LINE|L1 228790 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 300.333 chr1 80918632 80919051 + 1 NA Intergenic Intergenic 277554 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 256.333-25 chr8 130193580 130193922 + 1 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 102782 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 241.333-38 chr7 107152525 107153090 + 1 NA intron (NM_002736, intron 7 of 10) MER102b|DNA|hAT-Charlie -16154 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 253.667-28 chr3 117728219 117728642 + 1 NA Intergenic Intergenic -37505 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 206.5-12 chr12 31491944 31492179 + 1 NA intron (NM_144973, intron 2 of 20) intron (NM_144973, intron 2 of 20) -97862 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 296.5-6 chr10 90931781 90932126 + 1 NA Intergenic Intergenic -10678 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 428.333 chr14 97983664 97984527 + 1 NA Intergenic Intergenic -5971 NR_152750 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 253.667-40 chr8 120286014 120286481 + 1 NA intron (NM_021110, intron 33 of 47) intron (NM_021110, intron 33 of 47) 158903 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 259.5-24 chr4 59808863 59809224 + 1 NA Intergenic Intergenic 795470 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 185.833-10 chr16 12427606 12427924 + 1 NA intron (NM_032167, intron 18 of 20) intron (NM_032167, intron 18 of 20) -292556 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 219.167-14 chr6 71553952 71554323 + 1 NA Intergenic AluSx|SINE|Alu 133110 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 166.833-27 chr5 123305620 123305970 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie 117797 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 168.667-37 chr4 122230920 122231215 + 1 NA intron (NM_015312, intron 24 of 83) L1ME4a|LINE|L1 60464 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 187.667-45 chrX 141294061 141294392 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -51709 NM_022661 64663 Hs.375036 NM_022661 ENSG00000198573 SPANXC CT11.3|CTp11|SPANX-C|SPANX-E|SPANXE SPANX family member C protein-coding 213.333-8 chr13 41610563 41610814 + 1 NA intron (NM_015058, intron 39 of 44) intron (NM_015058, intron 39 of 44) -42293 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 206.667-38 chr3 172477150 172477534 + 1 NA Intergenic Intergenic -28886 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 237.667-24 chr20 42249043 42249363 + 1 NA intron (NM_007050, intron 13 of 30) intron (NM_007050, intron 13 of 30) -436280 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 201.833-6 chr12 38730470 38730702 + 1 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 175005 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 166.333-51 chr7 92769912 92770242 + 1 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 63882 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 188.333-26 chr2 173903245 173903593 + 1 NA 3' UTR (NM_001017371, exon 5 of 5) 3' UTR (NM_001017371, exon 5 of 5) 60461 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 164.5-25 chr2 39523863 39524158 + 1 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) 86594 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 244.667-29 chr6 37019888 37020333 + 1 NA intron (NM_173558, intron 9 of 15) AluSz6|SINE|Alu 14455 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 306.667-9 chr18 5849390 5849846 + 1 NA Intergenic Intergenic 8923 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 284.667-13 chr6 80003640 80004281 + 1 NA promoter-TSS (NM_001166691) promoter-TSS (NM_001166691) -645 NM_001166691 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 257.667-22 chr7 37800847 37801193 + 1 NA Intergenic MER34|LTR|ERV1 -47577 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 223.667-26 chr19 43898163 43898450 + 1 NA intron (NR_038334, intron 2 of 2) L1MB8|LINE|L1 3497 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 176.667-50 chr6 132936919 132937186 + 1 NA Intergenic Intergenic 119833 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 170.333-11 chr12 10757653 10757923 + 1 NA intron (NR_120463, intron 1 of 6) intron (NR_120463, intron 1 of 6) 7554 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 237.667-2 chr10 59075878 59076168 + 1 NA Intergenic L2a|LINE|L2 76505 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 203.667-54 chr8 81090590 81090868 + 1 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 21339 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 216.667-17 chr14 83068846 83069125 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 426353 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 247.667 chr1 29257372 29257672 + 1 NA intron (NM_133177, intron 2 of 30) intron (NM_133177, intron 2 of 30) 21000 NM_133178 10076 Hs.19718 NM_005704 ENSG00000060656 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase receptor type U protein-coding 167.5-29 chr3 117450589 117450889 + 1 NA Intergenic Intergenic 240186 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 172.667-51 chr5 170267311 170267636 + 1 NA intron (NM_005565, intron 8 of 20) L2b|LINE|L2 30304 NM_005565 3937 Hs.304475 NM_005565 ENSG00000043462 LCP2 SLP-76|SLP76 lymphocyte cytosolic protein 2 protein-coding 253.667-38 chr7 409787 410079 + 1 NA Intergenic Intergenic 30508 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 253.667-36 chr6 50294756 50295133 + 1 NA Intergenic Intergenic -245015 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 165.833-20 chr19 55808533 55808770 + 1 NA intron (NM_001297743, intron 2 of 8) intron (NM_001297743, intron 2 of 8) 23443 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 172.667-16 chr14 66608483 66608683 + 1 NA intron (NM_001024218, intron 1 of 21) L1PA16|LINE|L1 101176 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 207.5 chr1 91388915 91389466 + 1 NA intron (NM_001017975, intron 4 of 38) AluSg|SINE|Alu 15647 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 180.5-4 chr1 110797340 110797614 + 1 NA Intergenic L1PA16|LINE|L1 -73722 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 204.333-49 chr9 101395783 101396183 + 1 NA intron (NM_019051, intron 1 of 1) L1MA4|LINE|L1 2635 NM_019051 54534 Hs.288224 NM_019051 ENSG00000136897 MRPL50 MRP-L50 mitochondrial ribosomal protein L50 protein-coding 203.5-19 chr17 72125099 72125465 + 1 NA 3' UTR (NM_000346, exon 3 of 3) 3' UTR (NM_000346, exon 3 of 3) 4262 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 231.333-16 chr12 58794484 58794856 + 1 NA intron (NR_126341, intron 1 of 1) intron (NR_126341, intron 1 of 1) -12954 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 168.5-14 chr13 28668828 28669223 + 1 NA intron (NM_015932, intron 4 of 5) L2|LINE|L2 9895 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 238.333-15 chr12 60526776 60527172 + 1 NA Intergenic L1MA7|LINE|L1 837604 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 211.167-17 chr4 101115087 101115502 + 1 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 125578 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 296.333-12 chr4 151441264 151441695 + 1 NA intron (NM_001348694, intron 1 of 12) intron (NM_001348694, intron 1 of 12) 32303 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 200.167-3 chr1 167553680 167554072 + 1 NA promoter-TSS (NM_003851) promoter-TSS (NM_003851) -114 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 353.833-9 chr2 205851598 205852177 + 1 NA Intergenic MamRep605|LTR?|LTR? 169386 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 196.333-45 chr7 22852136 22852439 + 1 NA Intergenic Intergenic -1953 NR_146320 109729180 Hs.553139 NR_146320 SNHG26 - small nucleolar RNA host gene 26 ncRNA 240.333-27 chrX 119600601 119601005 + 1 NA intron (NM_017544, intron 1 of 2) AluSx1|SINE|Alu 5078 NM_017544 55922 Hs.437084 NM_017544 ENSG00000186416 NKRF ITBA4|NRF NFKB repressing factor protein-coding 208.833-2 chr1 108550616 108550900 + 1 NA Intergenic Intergenic -9342 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 193.333-12 chr12 44010045 44010377 + 1 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 174130 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 231.5-39 chr8 140976787 140977173 + 1 NA intron (NM_001352719, intron 1 of 32) L1ME3D|LINE|L1 24024 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 168.5-28 chr20 380727 380914 + 1 NA promoter-TSS (NM_001301190) promoter-TSS (NM_001301190) 191 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 201.5-23 chr2 164917076 164917477 + 1 NA intron (NM_001199148, intron 6 of 10) intron (NM_001199148, intron 6 of 10) 38249 NM_001351537 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 219.333-20 chr18 53267625 53267918 + 1 NA intron (NM_005215, intron 12 of 28) intron (NM_005215, intron 12 of 28) 30670 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 205.333-5 chr1 246044597 246044895 + 1 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 372666 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 271.833-15 chr7 114027890 114028334 + 1 NA Intergenic Intergenic -58215 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 192.667-4 chr10 5447359 5447621 + 1 NA intron (NM_005863, intron 1 of 9) intron (NM_005863, intron 1 of 9) 881 NM_005863 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 316.5-8 chr13 85590184 85590779 + 1 NA Intergenic Intergenic 208938 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 190.333-25 chr2 237780510 237780805 + 1 NA 3' UTR (NM_001137550, exon 24 of 24) 3' UTR (NM_001137550, exon 24 of 24) -18088 NM_001080504 375316 Hs.607265 NM_198852 ENSG00000177483 RBM44 - RNA binding motif protein 44 protein-coding 311.833-4 chr7 2264064 2264511 + 1 NA intron (NM_013321, intron 6 of 10) intron (NM_013321, intron 6 of 10) -6710 NR_106895 102465503 NR_106895 ENSG00000284047 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 244.667-13 chr16 19422928 19423460 + 1 NA intron (NM_001261841, intron 1 of 21) MER20|DNA|hAT-Charlie 5311 NM_001261841 79838 Hs.115838 NM_024780 ENSG00000103534 TMC5 - transmembrane channel like 5 protein-coding 175.667-41 chr4 20709547 20709758 + 1 NA intron (NR_047661, intron 4 of 7) intron (NR_047661, intron 4 of 7) 9194 NM_001130727 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 332.833-2 chr1 79079502 79080010 + 1 NA Intergenic Intergenic -73026 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 232.333-19 chr5 25703045 25703318 + 1 NA Intergenic L1MB8|LINE|L1 512228 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 218.333-34 chr9 110015717 110015979 + 1 NA intron (NM_147150, intron 6 of 9) intron (NM_147150, intron 6 of 9) -32750 NM_001004065 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 184.667-18 chr14 83389145 83389496 + 1 NA Intergenic Intergenic 746688 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 218.333-5 chr13 83556540 83556852 + 1 NA Intergenic Intergenic 325697 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 203.667-53 chr8 40889921 40890222 + 1 NA intron (NM_024645, intron 1 of 6) L1ME4a|LINE|L1 7755 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 258.5-20 chr3 69511348 69511961 + 1 NA Intergenic LTR16B|LTR|ERVL -125566 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 187.333-23 chr17 72646152 72646453 + 1 NA 3' UTR (NM_001159770, exon 10 of 10) 3' UTR (NM_001159770, exon 10 of 10) -5830 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 410.5-3 chr8 34356899 34357465 + 1 NA Intergenic AluSx|SINE|Alu -426739 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 307.167 chr1 50333229 50333955 + 1 NA Intergenic CpG 89851 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 198.5-13 chr14 20402992 20403249 + 1 NA intron (NM_001319035, intron 5 of 52) AluSg|SINE|Alu 10381 NM_007110 7011 Hs.508835 NM_007110 ENSG00000129566 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase associated protein 1 protein-coding 211.333-52 chr8 135506872 135507169 + 1 NA intron (NM_006558, intron 1 of 8) MER106A|DNA|hAT-Charlie 49564 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 165.167-35 chr5 57755163 57755426 + 1 NA Intergenic Intergenic 104634 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 233.833-18 chr5 123917341 123917690 + 1 NA Intergenic Intergenic 372098 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 253.5-7 chr11 33132688 33132972 + 1 NA intron (NM_001326, intron 3 of 20) intron (NM_001326, intron 3 of 20) 28650 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 231.667-32 chr8 23961622 23961965 + 1 NA Intergenic Intergenic -106987 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 366.667-2 chr11 76068848 76069526 + 1 NA intron (NM_003369, intron 13 of 14) intron (NM_003369, intron 13 of 14) 137315 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 237.667-14 chr17 21099086 21099371 + 1 NA Intergenic Intergenic 23672 NR_110895 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 248.333-33 chr8 132210880 132211306 + 1 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -105828 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 183.667-12 chr11 119207860 119208213 + 1 NA intron (NM_005188, intron 1 of 15) intron (NM_005188, intron 1 of 15) 1760 NM_005188 867 Hs.504096 NM_005188 ENSG00000110395 CBL C-CBL|CBL2|FRA11B|NSLL|RNF55 Cbl proto-oncogene protein-coding 198.667-20 chr18 32930441 32930877 + 1 NA Intergenic Intergenic -157636 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 321.167-17 chr4 118208780 118209132 + 1 NA intron (NM_004784, intron 6 of 13) intron (NM_004784, intron 6 of 13) -69806 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 170.333-17 chr14 58311257 58311455 + 1 NA intron (NM_002892, intron 5 of 23) L1MA8|LINE|L1 12801 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 254.667-12 chr17 47367747 47368074 + 1 NA intron (NM_152347, intron 10 of 24) intron (NM_152347, intron 10 of 24) 43955 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 276.167-24 chr8 133439085 133439699 + 1 NA Intergenic MER2|DNA|TcMar-Tigger 132495 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 326.5 chr1 87081863 87082486 + 1 NA intron (NM_012262, intron 2 of 6) intron (NM_012262, intron 2 of 6) -47591 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 165.167-44 chr7 4641807 4642190 + 1 NA Intergenic CpG -40297 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 189.5-2 chr1 104257613 104258124 + 1 NA Intergenic Intergenic 184845 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 413.333-5 chr17 32203375 32203926 + 1 NA intron (NM_001033566, intron 15 of 19) intron (NM_001033566, intron 15 of 19) -52079 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 327.667-5 chr16 8875612 8876023 + 1 NA Intergenic Intergenic -6805 NM_001278260 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 204.5-36 chr9 89943953 89944250 + 1 NA Intergenic Intergenic -25315 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 190.667-25 chr2 99379346 99379742 + 1 NA intron (NM_015904, intron 12 of 23) L1ME3Cz|LINE|L1 42155 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 170.5-35 chr5 31447284 31447544 + 1 NA intron (NM_013235, intron 22 of 34) L1MB8|LINE|L1 84679 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 206.333-21 chr2 124537346 124537678 + 1 NA intron (NM_130773, intron 10 of 23) intron (NM_130773, intron 10 of 23) 512225 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 201.333-8 chr10 102834288 102834533 + 1 NA intron (NM_000102, intron 3 of 7) intron (NM_000102, intron 3 of 7) 3003 NM_000102 1586 Hs.438016 NM_000102 ENSG00000148795 CYP17A1 CPT7|CYP17|P450C17|S17AH cytochrome P450 family 17 subfamily A member 1 protein-coding 210.667-52 chr7 133695625 133695999 + 1 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 129076 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 276.667-24 chr7 5125780 5126312 + 1 NA intron (NR_034163, intron 5 of 5) AluSc|SINE|Alu 18500 NR_034163 645700 Hs.690815 NR_034163 ENSG00000159904 ZNF890P - zinc finger protein 890, pseudogene pseudo 240.5-3 chr12 65266208 65266641 + 1 NA Intergenic Intergenic -12259 NM_198080 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 205.333-36 chr3 112884035 112884310 + 1 NA Intergenic L1PA15|LINE|L1 -38222 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 296.5-13 chr14 67931546 67932034 + 1 NA intron (NM_133509, intron 7 of 10) AluSq2|SINE|Alu 108198 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 249.5-25 chr8 77409404 77409743 + 1 NA Intergenic L2a|LINE|L2 -41124 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 214.667-41 chr7 24736218 24736575 + 1 NA intron (NM_004403, intron 3 of 9) L1MA3|LINE|L1 21068 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 269.333-16 chr3 87071746 87072213 + 1 NA Intergenic Intergenic -17301 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 243.667-25 chr2 163153944 163154318 + 1 NA Intergenic FordPrefect|DNA|hAT-Tip100 -315364 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 225.333-32 chr5 175719035 175719519 + 1 NA Intergenic AluSx1|SINE|Alu 61206 NM_001131055 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 238.5-21 chr20 58931320 58931680 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 39337 NR_132272 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 237.667-21 chr2 174058369 174058739 + 1 NA Intergenic Intergenic 33274 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 288.667-9 chr17 35536875 35537358 + 1 NA intron (NM_001363830, intron 1 of 4) AluJr|SINE|Alu 745 NM_001363830 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 344.333-8 chr2 220886830 220887235 + 1 NA Intergenic Intergenic 685272 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 200.667-9 chr12 1437395 1437936 + 1 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -62826 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 236.667-24 chr5 181281228 181281633 + 1 NA Intergenic REP522|Satellite|telo 20218 NR_102761 100507602 Hs.126768 NR_102759 ENSG00000248275 TRIM52-AS1 - TRIM52 antisense RNA 1 (head to head) ncRNA 169.5-46 chr8 80157366 80157612 + 1 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 13632 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 166.667-15 chr14 56515021 56515227 + 1 NA intron (NR_135241, intron 1 of 1) Tigger13a|DNA|TcMar-Tigger 793 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 506.667-2 chr10 79479761 79480585 + 1 NA Intergenic AluJr|SINE|Alu 30809 NR_136625 729815 Hs.564060 NR_136624 ENSG00000235705 LOC729815 - uncharacterized LOC729815 ncRNA 219.333-35 chr6 36432124 36432557 + 1 NA intron (NM_152990, intron 2 of 4) intron (NM_152990, intron 2 of 4) -10427 NR_104481 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 293.5-12 chr17 79964560 79964993 + 1 NA intron (NM_019020, intron 3 of 11) L1ME3D|LINE|L1 -13923 NM_001271845 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 278.333-12 chr18 5836389 5836843 + 1 NA Intergenic L2c|LINE|L2 -4079 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 237.5-5 chr10 80058616 80058970 + 1 NA intron (NR_027431, intron 2 of 4) AluSz|SINE|Alu -19853 NM_001270371 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 235.833-2 chr1 28984701 28985283 + 1 NA intron (NM_001166006, intron 1 of 14) AluSx1|SINE|Alu 70416 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 192.333-48 chr6 156413410 156413640 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger 34775 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 205.333-4 chr1 219404591 219404847 + 1 NA Intergenic L1MA4|LINE|L1 152605 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 264.333-6 chr11 29096348 29096662 + 1 NA Intergenic L1PA16|LINE|L1 -497908 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 307.833-11 chr6 6320703 6321170 + 1 NA promoter-TSS (NM_000129) promoter-TSS (NM_000129) -245 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 190.333-16 chr15 70486370 70487024 + 1 NA Intergenic Intergenic 19231 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 185.667-27 chr2 112314066 112314672 + 1 NA intron (NM_198581, intron 5 of 11) intron (NM_198581, intron 5 of 11) 38772 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 164.667-25 chr2 118089456 118089638 + 1 NA intron (NM_001321332, intron 1 of 5) intron (NM_001321332, intron 1 of 5) 997 NM_001321329 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 199.667-51 chr9 98491829 98492059 + 1 NA intron (NM_005458, intron 4 of 18) L1M6|LINE|L1 216991 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 183.5-26 chr22 50163216 50163417 + 1 NA Intergenic Intergenic -7415 NM_001160300 56666 Hs.440092 NM_052839 ENSG00000073150 PANX2 PX2|hPANX2 pannexin 2 protein-coding 189.667-27 chr2 174395337 174395661 + 1 NA promoter-TSS (NM_001193528) promoter-TSS (NM_001193528) 213 NM_004882 9541 Hs.632531 NM_004882 ENSG00000138433 CIR1 CIR corepressor interacting with RBPJ, 1 protein-coding 226.333-13 chr20 32393287 32393681 + 1 NA intron (NM_015338, intron 3 of 11) AluSx4|SINE|Alu 34419 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 164.5-33 chr20 45064254 45064545 + 1 NA intron (NM_001352385, intron 11 of 11) L1PA15|LINE|L1 36728 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 173.667-41 chr5 112492284 112492559 + 1 NA Intergenic Intergenic 72838 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 222.667-10 chr12 89383715 89384118 + 1 NA Intergenic Intergenic -31415 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 287.667-13 chr2 9897554 9897953 + 1 NA intron (NM_001318977, intron 7 of 13) intron (NM_001318977, intron 7 of 13) -53940 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 222.667-25 chr22 30660086 30660388 + 1 NA intron (NM_001304795, intron 2 of 2) MLT1E2|LTR|ERVL-MaLR 7638 NM_001304795 150290 Hs.517544 NM_152511 ENSG00000167065 DUSP18 DSP18|DUSP20|LMWDSP20 dual specificity phosphatase 18 protein-coding 204.833-11 chr19 27826033 27826449 + 1 NA non-coding (NR_146736, exon 3 of 3) non-coding (NR_146736, exon 3 of 3) -32301 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 292.333-8 chr15 98727212 98727740 + 1 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -56950 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 172.833-24 chr5 38207353 38207597 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR -51084 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 255.333-3 chr1 114477270 114477643 + 1 NA intron (NM_015906, intron 1 of 19) MIR|SINE|MIR 33747 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 306.5-2 chr1 234398714 234399236 + 1 NA intron (NM_005646, intron 25 of 29) MIRb|SINE|MIR 25274 NM_001301733 388753 Hs.23198 NM_001012985 ENSG00000168275 COA6 C1orf31|CEMCOX4 cytochrome c oxidase assembly factor 6 protein-coding 177.667-5 chr11 5684402 5684788 + 1 NA intron (NM_033093, intron 1 of 7) intron (NM_033093, intron 1 of 7) 479 NM_033034 85363 Hs.125300 NM_033034 ENSG00000132256 TRIM5 RNF88|TRIM5alpha tripartite motif containing 5 protein-coding 235.833-16 chr4 25441352 25441748 + 1 NA Intergenic L2b|LINE|L2 64287 NM_001286756 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 243.333-3 chr1 115423482 115423950 + 1 NA Intergenic L1MD1|LINE|L1 -85480 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 262.167-11 chr6 169654787 169655124 + 1 NA intron (NM_182552, intron 13 of 25) MER41G|LTR|ERV1 47074 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 212.667-49 chr8 87588739 87589229 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 285031 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 254.333-7 chr12 6487079 6487552 + 1 NA Intergenic AluY|SINE|Alu 5947 NM_016497 51258 Hs.55847 NM_016497 ENSG00000111639 MRPL51 CDA09|HSPC241|MRP64|bMRP64 mitochondrial ribosomal protein L51 protein-coding 222.333-9 chr15 58577647 58578004 + 1 NA Intergenic L1ME3G|LINE|L1 -79090 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 346.333-4 chr15 65746781 65747292 + 1 NA intron (NM_005848, intron 4 of 31) AluSz|SINE|Alu -27704 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 270.5-27 chr4 42750344 42750710 + 1 NA Intergenic Intergenic -93422 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 272.5-21 chr4 37453154 37453614 + 1 NA promoter-TSS (NM_001104629) promoter-TSS (NM_001104629) -541 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 217.333-18 chr2 38365688 38365975 + 1 NA intron (NM_001330462, intron 1 of 13) AluSq2|SINE|Alu 10699 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 205.667-37 chr6 140761465 140761760 + 1 NA Intergenic Intergenic 77798 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 171.167-4 chr1 155308595 155308850 + 1 NA promoter-TSS (NM_002004) promoter-TSS (NM_002004) -26 NM_001242825 2224 Hs.335918 NM_002004 ENSG00000160752 FDPS FPPS|FPS|POROK9 farnesyl diphosphate synthase protein-coding 304.333-12 chr7 89253965 89254412 + 1 NA intron (NM_181646, intron 2 of 3) L1ME3B|LINE|L1 -458451 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 204.167-19 chr3 138348002 138348380 + 1 NA promoter-TSS (NM_001252093) promoter-TSS (NM_001252093) -388 NM_001085049 22808 Hs.527021 NM_012219 ENSG00000158186 MRAS M-RAs|R-RAS3|RRAS3 muscle RAS oncogene homolog protein-coding 171.667-9 chr11 21613128 21613329 + 1 NA Intergenic Intergenic -579857 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 208.333-42 chr9 70284191 70284473 + 1 NA intron (NM_015110, intron 7 of 24) MIR3|SINE|MIR 25354 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 600.667 chr2 37983986 37984787 + 1 NA intron (NM_001170793, intron 4 of 9) intron (NM_001170793, intron 4 of 9) 33922 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 283.5-3 chr12 104200997 104201356 + 1 NA Intergenic L1MA4|LINE|L1 -14603 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 190.333-9 chr12 6493113 6493439 + 1 NA promoter-TSS (NM_016497) promoter-TSS (NM_016497) -14 NM_016497 51258 Hs.55847 NM_016497 ENSG00000111639 MRPL51 CDA09|HSPC241|MRP64|bMRP64 mitochondrial ribosomal protein L51 protein-coding 240.5-22 chr6 149565669 149566132 + 1 NA promoter-TSS (NM_138785) promoter-TSS (NM_138785) -475 NM_138785 116254 Hs.438872 NM_138785 ENSG00000055211 GINM1 C6orf72 glycoprotein integral membrane 1 protein-coding 207.5-18 chr18 48629838 48630070 + 1 NA intron (NM_014772, intron 2 of 11) Tigger7|DNA|TcMar-Tigger -40646 NR_039897 100616366 NR_039897 ENSG00000266276 MIR4743 - microRNA 4743 ncRNA 227.667-13 chr14 72429534 72429884 + 1 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -87111 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 289.667-20 chr5 21027324 21027837 + 1 NA Intergenic Intergenic -412045 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 208.5-30 chr3 30171423 30171738 + 1 NA Intergenic Intergenic -237424 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 265.667-24 chr8 64279226 64279606 + 1 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 89142 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 332.667-2 chr10 89442890 89443601 + 1 NA intron (NM_213606, intron 4 of 7) intron (NM_213606, intron 4 of 7) -12746 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 179.333-30 chr20 32902208 32902407 + 1 NA intron (NM_001143967, intron 11 of 26) L2|LINE|L2 43384 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 267.5-35 chr5 61301548 61302044 + 1 NA Intergenic Intergenic -30462 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 221.667-23 chr2 96923158 96923441 + 1 NA intron (NM_001122646, intron 10 of 16) MER41B|LTR|ERV1 4193 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 208.333-36 chr6 141467917 141468153 + 1 NA Intergenic LTR25-int|LTR|ERV1 620764 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 239.5-38 chr8 11889197 11889635 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -21329 NM_001908 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB|RECEUP cathepsin B protein-coding 196.333-30 chr3 102462999 102463413 + 1 NA intron (NM_175056, intron 6 of 10) intron (NM_175056, intron 6 of 10) 28191 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 224.833-20 chr4 110174187 110174692 + 1 NA intron (NM_001130721, intron 2 of 4) AluSz|SINE|Alu 24176 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 286.5 chr1 174769272 174769771 + 1 NA intron (NM_001366451, intron 3 of 12) LTR8A|LTR|ERV1 -30217 NM_001366456 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 228.5-22 chr4 17614351 17614580 + 1 NA promoter-TSS (NM_025205) promoter-TSS (NM_025205) -176 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 259.667-20 chr8 71314056 71314359 + 1 NA intron (NM_001370336, intron 8 of 17) intron (NM_001370336, intron 8 of 17) 42499 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 217.5-14 chr3 148399060 148399411 + 1 NA intron (NR_146712, intron 4 of 4) MIRc|SINE|MIR 118344 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 367.333-9 chr8 103978101 103978626 + 1 NA intron (NR_145711, intron 13 of 21) intron (NR_145711, intron 13 of 21) 159143 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 179.5-55 chrX 79083399 79083637 + 1 NA Intergenic L3|LINE|CR1 -87454 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 164.833-12 chr22 36524100 36524282 + 1 NA intron (NR_156418, intron 4 of 14) intron (NR_156418, intron 4 of 14) 4975 NM_003753 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 233.167-11 chr3 182211108 182211374 + 1 NA Intergenic Intergenic 258877 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 206.5-10 chr11 123641190 123641538 + 1 NA intron (NM_001040151, intron 4 of 6) intron (NM_001040151, intron 4 of 6) 13243 NM_001040151 55800 Hs.4865 NM_018400 ENSG00000166257 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium voltage-gated channel beta subunit 3 protein-coding 176.833-36 chr7 36115647 36116031 + 1 NA Intergenic Intergenic 20529 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 211.167-13 chr2 225554421 225554808 + 1 NA intron (NM_001371273, intron 4 of 7) AluSx3|SINE|Alu 153728 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 216.833-26 chr8 136779063 136779353 + 1 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 248410 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 167.333-51 chr6 147396432 147396815 + 1 NA Intergenic Intergenic -112067 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 293.667-26 chr8 83306368 83307001 + 1 NA Intergenic Intergenic -97074 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 179.5-42 chr6 41076693 41076976 + 1 NA intron (NM_001329684, intron 1 of 7) intron (NM_001329684, intron 1 of 7) 3860 NM_021705 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 340.333-13 chr5 36178888 36179354 + 1 NA intron (NM_032637, intron 9 of 9) intron (NM_032637, intron 9 of 9) 27010 NM_005983 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 206.667-21 chr17 63139188 63139601 + 1 NA intron (NM_025185, intron 4 of 25) AluSz6|SINE|Alu 173159 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 301.5-6 chr12 51296337 51296820 + 1 NA intron (NM_001364779, intron 8 of 12) intron (NM_001364779, intron 8 of 12) -26163 NM_001031628 57228 Hs.652389 NM_001031628 ENSG00000170545 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 205.667-12 chr13 48431329 48431641 + 1 NA intron (NM_005767, intron 1 of 6) intron (NM_005767, intron 1 of 6) -4577 NM_001162497 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 291.333-14 chr4 15644185 15644561 + 1 NA intron (NR_036464, intron 2 of 11) MER31B|LTR|ERV1 10984 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 222.5-10 chr11 4893969 4894366 + 1 NA Intergenic Intergenic 12467 NM_001004759 401665 NM_001004759 ENSG00000176900 OR51T1 OR11-26 olfactory receptor family 51 subfamily T member 1 protein-coding 189.167-22 chr2 27907536 27907890 + 1 NA intron (NM_199193, intron 3 of 13) L1MB3|LINE|L1 -16599 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 215.833-6 chr12 16444693 16445192 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 91525 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 182.333-26 chr8 17442592 17442855 + 1 NA Intergenic L1MD3|LINE|L1 -29372 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 237.5-16 chr15 63019240 63019684 + 1 NA Intergenic Intergenic -23285 NM_001365777 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 238.167-3 chr1 209506781 209507196 + 1 NA Intergenic Intergenic 74855 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 186.667-24 chr14 74335360 74335709 + 1 NA Intergenic MIRb|SINE|MIR -12937 NM_018228 55237 Hs.578167 NM_018228 ENSG00000133980 VRTN C14orf115|vertnin vertebrae development associated protein-coding 181.333-15 chr18 22818079 22818454 + 1 NA Intergenic Intergenic -31429 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 228.333-7 chr10 73164255 73164744 + 1 NA intron (NM_007265, intron 1 of 13) AluJb|SINE|Alu 3509 NM_007265 11319 Hs.631822 NM_007265 ENSG00000122882 ECD GCR2|HSGT1|SGT1 ecdysoneless cell cycle regulator protein-coding 174.5-13 chr17 10885696 10885914 + 1 NA Intergenic Intergenic -47718 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 209.5-34 chr7 49042722 49043197 + 1 NA Intergenic L1M1|LINE|L1 118412 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 216.333-31 chr4 175929183 175929573 + 1 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) 73313 NM_005277 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 199.333-38 chr5 35705208 35705489 + 1 NA intron (NM_024867, intron 17 of 36) intron (NM_024867, intron 17 of 36) 87485 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 195.5-31 chr5 59904560 59904890 + 1 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -10999 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 163.667-4 chr1 118034243 118034474 + 1 NA intron (NM_206996, intron 24 of 48) L2c|LINE|L2 104619 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 295.667-17 chr5 150092095 150092471 + 1 NA intron (NM_001349736, intron 1 of 22) intron (NM_001349736, intron 1 of 22) 341 NM_001349736 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 207.667-31 chr4 51881255 51881624 + 1 NA intron (NM_001040402, intron 5 of 10) intron (NM_001040402, intron 5 of 10) 37860 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 259.833-22 chrX 101171244 101171848 + 1 NA Intergenic AluJb|SINE|Alu -48398 NM_001171184 1821 Hs.159291 NM_001939 ENSG00000102385 DRP2 DRP-2 dystrophin related protein 2 protein-coding 172.833-30 chr8 84593759 84594015 + 1 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -112040 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 311.333-16 chr20 58972685 58973171 + 1 NA Intergenic LTR16E2|LTR|ERVL -8328 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 192.667-40 chrX 56259496 56259818 + 1 NA intron (NM_001324100, intron 2 of 3) intron (NM_001324100, intron 2 of 3) 26499 NR_136704 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 316.5-11 chr15 89055765 89056098 + 1 NA Intergenic AluJb|SINE|Alu -32525 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 183.333-11 chr10 117766939 117767136 + 1 NA Intergenic L1ME4a|LINE|L1 -221969 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 216.167-9 chr10 122879306 122879813 + 1 NA promoter-TSS (NR_037915) promoter-TSS (NR_037915) 22 NM_152644 196792 Hs.114648 NM_152644 ENSG00000213185 FAM24B - family with sequence similarity 24 member B protein-coding 259.667-9 chr17 78945815 78946113 + 1 NA Intergenic AluSz|SINE|Alu -20577 NM_003255 7077 Hs.633514 NM_003255 ENSG00000035862 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 193.833-23 chr5 669235 669531 + 1 NA intron (NM_007030, intron 2 of 3) intron (NM_007030, intron 2 of 3) 23969 NM_007030 11076 Hs.481466 NM_007030 ENSG00000171368 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 213.5-29 chr7 11897656 11897896 + 1 NA Intergenic Intergenic -65578 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 193.167-33 chr8 112159742 112160144 + 1 NA Intergenic L2a|LINE|L2 -483550 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 173.5-25 chr15 79849590 79849900 + 1 NA intron (NR_037654, intron 2 of 2) intron (NR_037654, intron 2 of 2) 47252 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 245.5-11 chr15 56754502 56754829 + 1 NA Intergenic MER121|DNA|hAT? -20579 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 290.667-18 chr7 26078850 26079522 + 1 NA Intergenic MIRb|SINE|MIR -73012 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 219.667-35 chr9 27914063 27914519 + 1 NA Intergenic L1MC1|LINE|L1 -340425 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 224.833-26 chr8 108443660 108444049 + 1 NA intron (NR_138033, intron 1 of 9) CpG 230 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 241.333-6 chr11 62753935 62754182 + 1 NA exon (NM_024784, exon 1 of 2) exon (NM_024784, exon 1 of 2) 102 NM_001370809 79842 Hs.147554 NM_024784 ENSG00000185670 ZBTB3 - zinc finger and BTB domain containing 3 protein-coding 230.333-22 chr20 32358980 32359259 + 1 NA promoter-TSS (NM_001363734) promoter-TSS (NM_001363734) 54 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 164.5-15 chr14 68120487 68120733 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 297018 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 172.333-15 chr12 60500657 60500861 + 1 NA Intergenic AluJb|SINE|Alu 811389 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 260.167-26 chr8 130468422 130468753 + 1 NA Intergenic Intergenic -24913 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 171.333-7 chr10 100242901 100243118 + 1 NA intron (NM_001303404, intron 10 of 12) L1MB7|LINE|L1 -5707 NR_002954 677800 Hs.662165 NR_002954 ENSG00000212464 SNORA12 U108 small nucleolar RNA, H/ACA box 12 snoRNA 215.167-33 chr8 112616424 112616917 + 1 NA intron (NM_001363185, intron 20 of 66) LTR75B|LTR|ERVL -26823 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 396.333-10 chr8 82305063 82305785 + 1 NA Intergenic Intergenic -463138 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 220.333-5 chr11 11805388 11805886 + 1 NA Intergenic L1MA10|LINE|L1 -22415 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 335.667-14 chr3 54588694 54589177 + 1 NA intron (NM_018398, intron 9 of 37) L1MD1|LINE|L1 50922 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 203.5-26 chr20 48085264 48085669 + 1 NA Intergenic MER4A|LTR|ERV1 -95349 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 227.667-5 chr10 27252318 27252549 + 1 NA promoter-TSS (NR_003525) promoter-TSS (NR_003525) -127 NR_003525 387646 Hs.631829 NM_001006604 ENSG00000230445 LRRC37A6P LRRC37E leucine rich repeat containing 37 member A6, pseudogene pseudo 175.5-19 chr13 112616895 112617211 + 1 NA Intergenic MER4D|LTR|ERV1 -28868 NM_001286279 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 200.333-25 chr20 46580721 46581012 + 1 NA intron (NM_001193340, intron 9 of 12) MER66B|LTR|ERV1 -30212 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 220.5-7 chr11 70196733 70197077 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -6258 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 259.167 chr13 73797089 73797348 + 1 NA intron (NM_007249, intron 5 of 7) intron (NM_007249, intron 5 of 7) 232974 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 203.333-19 chr12 67910522 67910819 + 1 NA Intergenic (T)n|Simple_repeat|Simple_repeat -18565 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 240.333-26 chr9 128234100 128234547 + 1 NA intron (NM_001288739, intron 11 of 21) L1MB3|LINE|L1 10507 NR_029619 406978 NR_029619 ENSG00000207581 MIR199B MIRN199B|mir-199b microRNA 199b ncRNA 249.167-15 chr2 234350141 234350608 + 1 NA Intergenic Intergenic 104221 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 189.5-31 chr5 154870908 154871200 + 1 NA intron (NM_001301080, intron 3 of 5) intron (NM_001301080, intron 3 of 5) 12427 NM_001301075 9337 Hs.26703 NM_004779 ENSG00000155508 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex subunit 8 protein-coding 240.167-16 chr4 103046661 103047376 + 1 NA intron (NM_001370207, intron 7 of 10) intron (NM_001370207, intron 7 of 10) -27313 NR_047515 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 214.5-21 chr20 33407208 33407523 + 1 NA TTS (NM_003098) TTS (NM_003098) -5796 NM_001278169 51654 Hs.435952 NM_016082 ENSG00000101391 CDK5RAP1 C20orf34|C42|CGI-05|HSPC167 CDK5 regulatory subunit associated protein 1 protein-coding 217.333-22 chr20 53611820 53612230 + 1 NA intron (NR_134576, intron 1 of 2) intron (NR_134576, intron 1 of 2) 3671 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 200.5-40 chr7 44855442 44855670 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -7430 NM_201517 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 185.5-33 chr5 121466026 121466352 + 1 NA Intergenic L1MEc|LINE|L1 143639 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 342.5-3 chr11 123235247 123235734 + 1 NA Intergenic Intergenic -40242 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 203.333-37 chr3 58754794 58755057 + 1 NA intron (NM_001351532, intron 14 of 14) MIRb|SINE|MIR -69546 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 308.667-18 chr8 19318220 19318639 + 1 NA intron (NM_001363111, intron 1 of 8) intron (NM_001363111, intron 1 of 8) 4453 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 223.667-42 chr6 13397708 13397985 + 1 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) 10291 NM_001242630 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 267.5-33 chr4 92669849 92670201 + 1 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 365626 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 371.333-6 chr6 27294867 27295439 + 1 NA Intergenic Intergenic 17079 NM_033482 94026 Hs.729955 NM_033482 ENSG00000158553 POM121L2 POM121-L|POM121L POM121 transmembrane nucleoporin like 2 protein-coding 217.333-45 chr8 129506171 129506628 + 1 NA intron (NR_130917, intron 1 of 3) L1MD|LINE|L1 -22257 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 200.5-3 chr10 45001606 45002005 + 1 NA promoter-TSS (NR_126421) promoter-TSS (NR_126421) 882 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 268.667-20 chr3 127648448 127648776 + 1 NA intron (NM_015720, intron 2 of 7) L1ME4a|LINE|L1 19427 NM_015720 50512 Hs.591290 NM_015720 ENSG00000114631 PODXL2 EG|PODLX2 podocalyxin like 2 protein-coding 190.667-5 chr10 48573744 48574015 + 1 NA TTS (NM_001347737) TTS (NM_001347737) 31194 NR_144646 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 180.833-12 chr2 51749262 51749451 + 1 NA intron (NR_135237, intron 5 of 10) MER2|DNA|TcMar-Tigger -621292 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 208.5-31 chr3 67436790 67437095 + 1 NA intron (NM_001177599, intron 9 of 10) (TTTTC)n|Simple_repeat|Simple_repeat 211478 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 249.667-31 chr8 102309426 102309868 + 1 NA intron (NM_001282873, intron 20 of 58) Tigger3b|DNA|TcMar-Tigger 70196 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 213.167-24 chr7 25507098 25507330 + 1 NA Intergenic L1MA3|LINE|L1 155926 NR_157825 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 274.5-2 chr10 100540218 100540572 + 1 NA intron (NM_017902, intron 2 of 7) AluJo|SINE|Alu 4452 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 222.333-37 chr9 86320415 86320741 + 1 NA intron (NM_001185059, intron 14 of 26) intron (NM_001185059, intron 14 of 26) 33832 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 346.333-6 chr4 73506148 73506845 + 1 NA Intergenic MamTip2|DNA|hAT-Tip100 -2307 NR_046377 728040 Hs.640574 NR_046377 ENSG00000250436 LINC02499 - long intergenic non-protein coding RNA 2499 ncRNA 170.5-20 chr19 56129829 56130143 + 1 NA Intergenic AluSg7|SINE|Alu -8691 NM_001351682 126208 Hs.397153 NM_001002836 ENSG00000142409 ZNF787 TIP20 zinc finger protein 787 protein-coding 224.333-20 chr2 99541862 99542286 + 1 NA Intergenic Intergenic -52057 NM_001321455 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 277.333-10 chr12 2479541 2479903 + 1 NA intron (NM_199460, intron 5 of 49).2 intron (NM_199460, intron 5 of 49).2 192498 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 171.333-29 chr20 14090466 14090763 + 1 NA intron (NM_001351663, intron 3 of 17) L1MD2|LINE|L1 95098 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 218.667-10 chr15 84849725 84850102 + 1 NA intron (NM_020778, intron 5 of 13) L1MEf|LINE|L1 33233 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 187.333-6 chr1 213250321 213250594 + 1 NA intron (NM_001136138, intron 11 of 13) intron (NM_001136138, intron 11 of 13) 199216 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 207.333-34 chr4 131644331 131644860 + 1 NA Intergenic Intergenic -120243 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 179.833-12 chr16 46673378 46673969 + 1 NA intron (NM_018206, intron 10 of 16) intron (NM_018206, intron 10 of 16) 15505 NM_018206 55737 Hs.454528 NM_018206 ENSG00000069329 VPS35 MEM3|PARK17 VPS35 retromer complex component protein-coding 167.333-29 chr2 59924469 59924744 + 1 NA Intergenic Intergenic 458430 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 200.667-13 chr13 42104370 42104871 + 1 NA intron (NM_178009, intron 1 of 29) MLT1J2|LTR|ERVL-MaLR -33422 NR_123715 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 217.833-19 chr8 47341238 47341709 + 1 NA intron (NR_104581, intron 5 of 16) intron (NR_104581, intron 5 of 16) 80535 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 280.333-12 chr16 17013301 17013820 + 1 NA Intergenic Intergenic -120944 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 261.833-13 chr21 21908588 21909055 + 1 NA Intergenic Intergenic 161836 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 243.333-36 chr5 94909053 94909465 + 1 NA exon (NM_024717, exon 10 of 23) exon (NM_024717, exon 10 of 23) 172607 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 258.333-22 chr8 111968319 111968775 + 1 NA Intergenic Intergenic 591908 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 243.833-9 chr11 66539943 66540201 + 1 NA intron (NM_207340, intron 2 of 2) intron (NM_207340, intron 2 of 2) 5976 NM_207340 254359 Hs.209587 NM_207340 ENSG00000174165 ZDHHC24 - zinc finger DHHC-type containing 24 protein-coding 202.333-14 chr13 25608065 25608295 + 1 NA intron (NM_016529, intron 24 of 36) MSTB1|LTR|ERVL-MaLR 139406 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 171.667-61 chr9 76886985 76887174 + 1 NA intron (NM_001308048, intron 1 of 17) MIR|SINE|MIR 19008 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 200.667-40 chr4 51874220 51874469 + 1 NA exon (NM_001287757, exon 5 of 12) exon (NM_001287757, exon 5 of 12) 30765 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 230.667-26 chr7 50680072 50680458 + 1 NA intron (NM_001371009, intron 2 of 15) intron (NM_001371009, intron 2 of 15) 25036 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 221.333-15 chr21 30929332 30929718 + 1 NA Intergenic Intergenic -47945 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 180.333-31 chr2 161883886 161884188 + 1 NA intron (NM_001354443, intron 10 of 25) intron (NM_001354443, intron 10 of 25) 190178 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 192.333-23 chr17 78391900 78392218 + 1 NA intron (NR_111989, intron 1 of 8) intron (NR_111989, intron 1 of 8) 13410 NM_024419 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 259.667-3 chr11 117393958 117394368 + 1 NA intron (NM_001271933, intron 19 of 31) intron (NM_001271933, intron 19 of 31) 66309 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 256.833-6 chr18 61322440 61322849 + 1 NA Intergenic Intergenic -10786 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 225.5-11 chr15 77485774 77486138 + 1 NA TTS (NM_018200) TTS (NM_018200) -39639 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 335.667-15 chr4 118744445 118744916 + 1 NA intron (NM_014822, intron 14 of 22) AluSg4|SINE|Alu 59288 NM_020961 57721 Hs.596872 NM_020961 ENSG00000145388 METTL14 hMETTL14 methyltransferase like 14 protein-coding 283.167-6 chr13 87663155 87663519 + 1 NA intron (NR_033829, intron 1 of 5) AluSg|SINE|Alu 7626 NR_033829 642345 Hs.508337 NR_033829 ENSG00000228824 MIR4500HG - MIR4500 host gene ncRNA 322.333-4 chr12 46896442 46897032 + 1 NA Intergenic Intergenic -70740 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 210.667-49 chr7 95645511 95645949 + 1 NA Intergenic Intergenic -49214 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 266.5-3 chr1 118222574 118222925 + 1 NA Intergenic Intergenic -37521 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 210.667-2 chr1 157765444 157765685 + 1 NA intron (NM_001159488, intron 7 of 8) L1MEg|LINE|L1 11568 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 286.167 chr1 157497751 157498097 + 1 NA Intergenic Intergenic 54591 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 212.667-21 chr19 48292280 48292622 + 1 NA Intergenic Intergenic 21164 NM_001369812 163071 Hs.511883 NM_153608 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 178.333-5 chr1 235275788 235276112 + 1 NA intron (NR_135074, intron 2 of 24) AluJb|SINE|Alu 51537 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 199.5-33 chr3 197119093 197119368 + 1 NA intron (NM_001366216, intron 11 of 23) intron (NM_001366216, intron 11 of 23) 64642 NR_158766 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 171.833-15 chr21 16311988 16312318 + 1 NA intron (NR_027790, intron 4 of 7) L2a|LINE|L2 -27385 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 201.833-15 chr4 30719396 30719652 + 1 NA promoter-TSS (NM_032456) promoter-TSS (NM_032456) -845 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 208.333-3 chr1 111547265 111547769 + 1 NA intron (NM_001370216, intron 1 of 7) HSMAR2|DNA|TcMar-Mariner 5508 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 212.333-28 chr6 38480076 38480374 + 1 NA intron (NM_001172418, intron 5 of 10) MIRb|SINE|MIR -1371 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 193.667-10 chr10 11495370 11495574 + 1 NA intron (NM_014688, intron 7 of 14) HAL1|LINE|L1 36808 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 269.667-14 chr2 114260986 114261371 + 1 NA Intergenic L1M7|LINE|L1 -181463 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 241.333-30 chr6 42505295 42505736 + 1 NA Intergenic U13_|snRNA|snRNA -53291 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 179.667-33 chr4 69147812 69148124 + 1 NA Intergenic Intergenic -34132 NR_136191 105377267 Hs.654304 NR_136191 ENSG00000250696 LOC105377267 - uncharacterized LOC105377267 ncRNA 404.833-4 chr15 73634463 73635338 + 1 NA Intergenic Intergenic -1511 NM_001161364 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 248.167-13 chr20 52347762 52348231 + 1 NA Intergenic MER113A|DNA|hAT-Charlie -156011 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 196.333-5 chr1 201743459 201743805 + 1 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 3732 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 241.167-10 chr15 96418069 96418509 + 1 NA Intergenic Intergenic 84524 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 198.833-26 chr5 72682005 72682353 + 1 NA Intergenic L1MA4A|LINE|L1 -21510 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 170.833-35 chr9 129790065 129790552 + 1 NA Intergenic AluJb|SINE|Alu -12835 NR_133948 27348 Hs.252682 NM_014506 ENSG00000136816 TOR1B DQ1 torsin family 1 member B protein-coding 171.333-47 chr6 47630872 47631149 + 1 NA Intergenic Intergenic -25462 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 331.333-9 chr6 144585202 144585801 + 1 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 179846 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 240.5-12 chr18 13797114 13797627 + 1 NA Intergenic Intergenic -26779 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 249.333-8 chr14 72005783 72006104 + 1 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 72416 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 176.5-34 chr5 172523136 172523333 + 1 NA Intergenic Intergenic 35780 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 193.333-52 chr8 125769702 125770033 + 1 NA Intergenic Intergenic 181330 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 169.333-17 chr11 81981629 81982066 + 1 NA intron (NR_120571, intron 6 of 7) L1MC3|LINE|L1 -91011 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 234.667-20 chr3 114240666 114240961 + 1 NA Intergenic AluSg|SINE|Alu -3235 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 164.5-23 chr19 30219394 30219629 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -152873 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 237.667-35 chr6 151604840 151605203 + 1 NA intron (NM_025059, intron 9 of 10) L1MA5|LINE|L1 -85475 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 245.667-10 chr2 114469825 114470274 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 8472 NM_001321911 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 199.667-49 chr8 141131279 141131511 + 1 NA intron (NM_014957, intron 1 of 22) intron (NM_014957, intron 1 of 22) 2806 NM_001352891 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 227.333-25 chr4 37114830 37115270 + 1 NA Intergenic Intergenic 113271 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 339.5-7 chr18 57513918 57514490 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 72498 NM_001371094 263.667-24 chr8 133390800 133391240 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -93716 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 200.667-53 chr7 150755635 150756010 + 1 NA Intergenic Intergenic 18474 NM_018384 55340 Hs.647079 NM_018384 ENSG00000196329 GIMAP5 HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD GTPase, IMAP family member 5 protein-coding 253.833-3 chr13 25287292 25287593 + 1 NA promoter-TSS (NM_004685) promoter-TSS (NM_004685) 46 NM_004685 9107 Hs.643702 NM_004685 ENSG00000139505 MTMR6 - myotubularin related protein 6 protein-coding 206.833-3 chr11 65957035 65957275 + 1 NA intron (NM_152762, intron 5 of 7) LTR83|LTR|ERVL -4579 NM_005146 9092 Hs.502883 NM_005146 ENSG00000175467 SART1 Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP protein-coding 172.667-10 chr10 115600459 115600690 + 1 NA intron (NM_207303, intron 26 of 28) L1ME1|LINE|L1 507209 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 179.333-43 chr6 44079599 44079976 + 1 NA Intergenic Intergenic -5135 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 230.667-20 chr5 15490452 15490757 + 1 NA Intergenic L2a|LINE|L2 -9576 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 167.5-28 chr3 98188523 98188695 + 1 NA Intergenic HUERS-P3b-int|LTR|ERV1 19909 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 275.667-8 chr15 92801628 92802101 + 1 NA Intergenic L2c|LINE|L2 6380 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 211.333-22 chr2 57680224 57680554 + 1 NA Intergenic L1MC5|LINE|L1 -227262 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 266.333-6 chr11 59359060 59359532 + 1 NA Intergenic Intergenic -5163 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 227.167-8 chr15 26581005 26581499 + 1 NA intron (NM_001191320, intron 3 of 6) intron (NM_001191320, intron 3 of 6) 47838 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 204.333-50 chr9 109792964 109793220 + 1 NA intron (NM_053016, intron 1 of 6) intron (NM_053016, intron 1 of 6) 12894 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 245.667-13 chr20 50580478 50580945 + 1 NA intron (NM_002827, intron 8 of 9) L1ME3G|LINE|L1 -5075 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 268.333-15 chr3 178392417 178392967 + 1 NA Intergenic Intergenic -26509 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 168.333-47 chr4 54116522 54116772 + 1 NA Intergenic L1MB2|LINE|L1 16484 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 180.167-21 chr6 67925374 67925823 + 1 NA Intergenic Intergenic -129753 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 207.167-7 chr14 48544950 48545393 + 1 NA Intergenic L1PA15|LINE|L1 -750157 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 237.667-33 chr5 106685040 106685295 + 1 NA Intergenic L1PB1|LINE|L1 325847 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 320.833-2 chr19 4636191 4636651 + 1 NA Intergenic CpG -3095 NM_152362 126282 Hs.465643 NM_152362 ENSG00000185361 TNFAIP8L1 TIPE1 TNF alpha induced protein 8 like 1 protein-coding 338.667-7 chr16 74096828 74097259 + 1 NA Intergenic Intergenic 118478 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 193.667-29 chr2 190465287 190465545 + 1 NA intron (NM_017694, intron 3 of 7) intron (NM_017694, intron 3 of 7) 57061 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 292.167-3 chr1 150794833 150795318 + 1 NA Intergenic L1MB4|LINE|L1 13185 NM_000396 1513 Hs.632466 NM_000396 ENSG00000143387 CTSK CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD cathepsin K protein-coding 175.833-20 chr17 60729203 60729443 + 1 NA intron (NM_001330413, intron 5 of 25) L1ME2|LINE|L1 51472 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 211.667-41 chr6 135264323 135264817 + 1 NA Intergenic Intergenic 25410 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 220.667-22 chr2 57087639 57087933 + 1 NA Intergenic L1MA3|LINE|L1 -819865 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 170.167-20 chr17 56208738 56208919 + 1 NA intron (NM_001365758, intron 2 of 20) intron (NM_001365758, intron 2 of 20) 55353 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 288.667-15 chr5 45468092 45468555 + 1 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 228057 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 268.833-14 chr3 39949772 39950051 + 1 NA intron (NM_001284424, intron 2 of 15) L3b|LINE|CR1 140251 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 273.667-13 chr4 33765887 33766278 + 1 NA Intergenic L2a|LINE|L2 273811 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 269.167-8 chr2 3677474 3678073 + 1 NA intron (NM_018436, intron 3 of 11) intron (NM_018436, intron 3 of 11) 19573 NM_018436 55821 Hs.97899 NM_018436 ENSG00000151360 ALLC ALC allantoicase protein-coding 236.333-8 chr15 34243627 34244130 + 1 NA intron (NM_001042496, intron 16 of 25) intron (NM_001042496, intron 16 of 25) 18862 NM_001286420 51234 Hs.250905 NM_016454 ENSG00000128463 EMC4 PIG17|TMEM85 ER membrane protein complex subunit 4 protein-coding 236.667-29 chr7 37207902 37208210 + 1 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 145612 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 246.833-2 chr1 233707414 233707714 + 1 NA Intergenic Intergenic 83412 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 236.5-2 chr1 203105924 203106346 + 1 NA Intergenic L1ME3E|LINE|L1 -20123 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 348.5 chr10 8026975 8027358 + 1 NA Intergenic Intergenic 25325 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 176.333-20 chr21 21284100 21284579 + 1 NA exon (NM_001352591, exon 3 of 18) exon (NM_001352591, exon 3 of 18) 137177 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 210.667-37 chr5 42774936 42775341 + 1 NA intron (NM_001134848, intron 4 of 8) L1MCa|LINE|L1 18320 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 224.5-20 chr2 57808302 57808537 + 1 NA Intergenic Intergenic -99232 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 218.667-6 chr12 112632519 112632772 + 1 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 57409 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 181.5-5 chr1 221440102 221440430 + 1 NA Intergenic Intergenic -103970 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 369.167-2 chr17 59558962 59559548 + 1 NA Intergenic Intergenic -6355 NM_024612 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 251.5-14 chr2 220909976 220910325 + 1 NA Intergenic Intergenic 662154 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 204.667-14 chr17 50028302 50028532 + 1 NA Intergenic Intergenic 27322 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 PICART1 - p53 inducible cancer associated RNA transcript 1 ncRNA 308.5-17 chr3 130545245 130545592 + 1 NA Intergenic L1MC4|LINE|L1 -14916 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 216.333-6 chr10 52101125 52101452 + 1 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 212840 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 247.333-21 chr5 68215032 68215282 + 1 NA promoter-TSS (NM_181523) promoter-TSS (NM_181523) -599 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 199.5-9 chr12 97933044 97933325 + 1 NA Intergenic MIRb|SINE|MIR 5937 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 186.167-14 chr2 128322619 128323011 + 1 NA Intergenic Intergenic -3947 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 167.667-23 chr21 28954468 28954715 + 1 NA intron (NM_015565, intron 16 of 29) L1MA4|LINE|L1 38286 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 191.833 chr1 168603393 168603660 + 1 NA Intergenic Intergenic 26921 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 199.5-20 chr17 18294314 18294530 + 1 NA intron (NM_004618, intron 10 of 18) AluSc|SINE|Alu 20572 NM_001320759 7156 Hs.592115 NM_004618 ENSG00000177302 TOP3A MGRISCE2|PEOB5|TOP3|ZGRF7 DNA topoisomerase III alpha protein-coding 175.667-8 chr10 80541266 80541521 + 1 NA intron (NM_001145719, intron 1 of 6) MER41G|LTR|ERV1 574 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 217.333-29 chr4 89882904 89883347 + 1 NA intron (NM_001371403, intron 1 of 8) L1ME2|LINE|L1 3614 NM_001371403 163.333-51 chr6 13700061 13700225 + 1 NA intron (NM_005493, intron 1 of 13) intron (NM_005493, intron 1 of 13) 11692 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 196.667-25 chr2 9371524 9371873 + 1 NA intron (NM_003887, intron 16 of 27) intron (NM_003887, intron 16 of 27) 50893 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 236.5-4 chr10 57098497 57098932 + 1 NA Intergenic MER63B|DNA|hAT-Blackjack 205845 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 171.833-4 chr1 237526145 237526522 + 1 NA intron (NM_001035, intron 24 of 104) L1PA17|LINE|L1 55214 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 205.167-19 chr3 127525488 127525737 + 1 NA intron (NR_125397, intron 5 of 6) MER44D|DNA|TcMar-Tigger 12168 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 195.333-29 chr8 129197051 129197436 + 1 NA Intergenic Intergenic 43997 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 253.667-33 chr6 15561233 15561617 + 1 NA intron (NR_036448, intron 8 of 9) MER41-int|LTR|ERV1 101603 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 291.167-4 chr11 26276411 26276937 + 1 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 11333 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 262.333-15 chr2 84716442 84716795 + 1 NA intron (NM_001370, intron 58 of 76) intron (NM_001370, intron 58 of 76) 164466 NM_001277053 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 183.5-16 chr17 55542812 55543096 + 1 NA Intergenic L1MEc|LINE|L1 -121119 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 229.333-7 chr11 81500215 81500539 + 1 NA Intergenic Intergenic 390459 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 200.333-10 chr11 104669339 104669705 + 1 NA Intergenic Intergenic -60220 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 216.5-40 chr6 84647214 84647624 + 1 NA Intergenic Intergenic -42039 NR_125875 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 210.5-38 chr9 112288160 112288542 + 1 NA intron (NM_001244898, intron 2 of 13) L1MEf|LINE|L1 44675 NM_001244898 9991 Hs.269988 NM_005156 ENSG00000119314 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 177.667-3 chr1 172552658 172552885 + 1 NA intron (NM_001282750, intron 2 of 22) intron (NM_001282750, intron 2 of 22) 19621 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 192.167-9 chr10 72431893 72432312 + 1 NA intron (NM_001195519, intron 3 of 6) AluJr|SINE|Alu -77183 NM_001365081 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 382.667-12 chrX 114620125 114620530 + 1 NA intron (NM_001256761, intron 2 of 5) intron (NM_001256761, intron 2 of 5) -10470 NR_002993 677816 Hs.693123 NR_002993 ENSG00000208839 SNORA35 HBI-36|SNORA35A small nucleolar RNA, H/ACA box 35 snoRNA 201.833-5 chr11 115583210 115583593 + 1 NA Intergenic AluSx1|SINE|Alu -78986 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 181.667-29 chr2 227888644 227889061 + 1 NA intron (NM_178821, intron 2 of 12) intron (NM_178821, intron 2 of 12) 17221 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 206.5-62 chrX 138622124 138622470 + 1 NA 3' UTR (NM_004114, exon 5 of 5) 3' UTR (NM_004114, exon 5 of 5) 45496 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 195.333-30 chr9 26746671 26747015 + 1 NA Intergenic Intergenic 145959 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 194.5-36 chr4 30276454 30276786 + 1 NA Intergenic Intergenic -443749 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 288.333-17 chr5 176447926 176448392 + 1 NA promoter-TSS (NM_014613) promoter-TSS (NM_014613) -226 NM_014613 23197 Hs.484242 NM_014613 ENSG00000113194 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 211.833-15 chr3 169149221 169149447 + 1 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -1863 NM_001366467 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 196.667-42 chr6 133835772 133835977 + 1 NA intron (NR_027030, intron 1 of 2) intron (NR_027030, intron 1 of 2) 14727 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 187.167-22 chr3 4824817 4825119 + 1 NA intron (NM_001168272, intron 59 of 60) intron (NM_001168272, intron 59 of 60) -73378 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 239.667-4 chr1 97969444 97969728 + 1 NA Intergenic AluSc8|SINE|Alu -27846 NR_146275 109729128 NR_146275 LINC01930 - long intergenic non-protein coding RNA 1930 ncRNA 205.333-2 chr1 166766835 166767040 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -72538 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 219.667-32 chr8 72008832 72009170 + 1 NA intron (NR_033652, intron 4 of 4) MLT1J|LTR|ERVL-MaLR 66583 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 171.333-30 chr20 48363025 48363478 + 1 NA intron (NR_026958, intron 1 of 4) AluJb|SINE|Alu 3340 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 217.333-4 chr1 198293103 198293363 + 1 NA intron (NM_133494, intron 8 of 9) intron (NM_133494, intron 8 of 9) 136235 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 254.5-25 chr21 17511387 17511709 + 1 NA Intergenic AluY|SINE|Alu -1358 NM_001207066 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 263.5-8 chr15 75882255 75882620 + 1 NA intron (NM_001284382, intron 7 of 11) intron (NM_001284382, intron 7 of 11) -21422 NM_012170 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 212.667-7 chr12 97322662 97323077 + 1 NA Intergenic MER34-int|LTR|ERV1 -139907 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 191.333-24 chr2 199472261 199472598 + 1 NA non-coding (NR_026830, exon 2 of 2) non-coding (NR_026830, exon 2 of 2) -1163 NM_015265 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 204.333-47 chr8 6958074 6958307 + 1 NA Intergenic Intergenic 1971 NR_073408 449492 Hs.552565 NR_073408 ENSG00000233238 DEFA9P DEFAP2 defensin alpha 9, pseudogene pseudo 216.667-21 chr18 32898954 32899247 + 1 NA Intergenic MIRb|SINE|MIR -126077 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 354.667-5 chr15 78514221 78514675 + 1 NA intron (NM_001083612, intron 2 of 4) intron (NM_001083612, intron 2 of 4) 6871 NM_001013619 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 251.167-19 chr7 107744142 107744408 + 1 NA promoter-TSS (NR_144536) promoter-TSS (NR_144536) 133 NM_024814 79872 Hs.592271 NM_024814 ENSG00000105879 CBLL1 HAKAI|RNF188 Cbl proto-oncogene like 1 protein-coding 206.333-39 chrX 63050136 63050352 + 1 NA Intergenic L1PA17|LINE|L1 301088 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 295.167-14 chr3 16483805 16484356 + 1 NA intron (NM_015150, intron 2 of 9) intron (NM_015150, intron 2 of 9) 29619 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 299.833-10 chr17 50473823 50474446 + 1 NA intron (NM_025149, intron 14 of 15) intron (NM_025149, intron 14 of 15) -4666 NR_130911 55316 Hs.8033 NM_018346 ENSG00000136444 RSAD1 HemW radical S-adenosyl methionine domain containing 1 protein-coding 297.167-9 chr4 39424812 39425432 + 1 NA intron (NM_175737, intron 1 of 4) intron (NM_175737, intron 1 of 4) 13212 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 183.667-2 chr1 171645931 171646182 + 1 NA intron (NM_000261, intron 1 of 2) intron (NM_000261, intron 1 of 2) 6632 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 178.333-7 chr11 102592127 102592538 + 1 NA intron (NM_004771, intron 8 of 9) intron (NM_004771, intron 8 of 9) 33000 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 217.667-35 chr6 167909712 167910143 + 1 NA intron (NM_001207008, intron 12 of 31) intron (NM_001207008, intron 12 of 31) 67012 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 203.667-45 chr7 20220706 20220989 + 1 NA intron (NR_134569, intron 3 of 3) intron (NR_134569, intron 3 of 3) 3270 NR_134568 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 280.333-5 chr11 35212629 35213084 + 1 NA intron (NM_001001389, intron 13 of 16) AluSz|SINE|Alu 49906 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 206.667-52 chr7 146400264 146400470 + 1 NA Intergenic Intergenic -373904 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 301.833-10 chr6 56955295 56955722 + 1 NA promoter-TSS (NM_001144769) promoter-TSS (NM_001144769) 401 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 241.667-25 chr5 170594113 170594693 + 1 NA intron (NM_001278339, intron 1 of 7) MIR|SINE|MIR 87067 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 222.5-3 chr1 161762486 161762743 + 1 NA Intergenic MER49|LTR|ERV1 -3706 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 284.667-18 chr8 32269792 32270208 + 1 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -170746 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 191.5-42 chr6 43770453 43770947 + 1 NA 5' UTR (NM_001171622, exon 1 of 5) 5' UTR (NM_001171622, exon 1 of 5) 489 NM_001033756 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 283.667-5 chr17 15988211 15988673 + 1 NA intron (NM_001042697, intron 2 of 4) L1ME3Cz|LINE|L1 11262 NM_001042698 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger SWIM-type containing 7 protein-coding 282.834-10 chr8 66698847 66699627 + 1 NA intron (NM_001204173, intron 3 of 18) AluSx|SINE|Alu -13544 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 245.333-23 chr4 44304727 44305266 + 1 NA intron (NM_198353, intron 1 of 1) L1MEd|LINE|L1 143813 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 226.167-30 chrX 121893140 121893425 + 1 NA Intergenic Intergenic 522310 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 167.833-32 chr3 56522199 56522523 + 1 NA Intergenic Intergenic -34795 NR_148374 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 219.833-29 chrX 90031874 90032252 + 1 NA Intergenic MER73|LTR|ERVL 110155 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 179.667-27 chr20 11236024 11236294 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 37224 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 215.333-15 chr12 24541415 24541729 + 1 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 20919 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 222.5-24 chr21 43189043 43189432 + 1 NA Intergenic Intergenic 19001 NM_001363766 1409 Hs.184085 NM_000394 ENSG00000160202 CRYAA CRYA1|CTRCT9|HSPB4 crystallin alpha A protein-coding 207.167 chr1 41828539 41828974 + 1 NA intron (NM_024503, intron 1 of 8) MIRc|SINE|MIR 90166 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 212.5-23 chr3 82811935 82812182 + 1 NA Intergenic L1M4c|LINE|L1 825916 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 207.833-7 chr16 71629365 71629634 + 1 NA intron (NM_001017967, intron 2 of 2) intron (NM_001017967, intron 2 of 2) 3315 NM_052858 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 264.167-21 chr7 84750484 84750855 + 1 NA Intergenic L1MA6|LINE|L1 218193 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 226.333-22 chr5 90761995 90762351 + 1 NA intron (NR_003149, intron 58 of 89) intron (NR_003149, intron 58 of 89) 203376 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 265.667-13 chr15 88578484 88578851 + 1 NA Intergenic AluSq2|SINE|Alu 25936 NR_120369 101929743 Hs.558810 NR_120369 ENSG00000249487 LINC01586 - long intergenic non-protein coding RNA 1586 ncRNA 318.667-10 chr5 82315171 82315588 + 1 NA intron (NM_001017971, intron 9 of 9) L4_A_Mam|LINE|RTE-X 35917 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 183.333-22 chr13 97208881 97209213 + 1 NA Intergenic Intergenic -13242 NM_001306070 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 194.667-29 chr17 76779430 76779795 + 1 NA TTS (NM_001353018) TTS (NM_001353018) -19432 NR_110837 101928514 Hs.617206 NR_110837 ENSG00000267065 LINC02080 - long intergenic non-protein coding RNA 2080 ncRNA 215.333-30 chr22 20606161 20606575 + 1 NA Intergenic Intergenic -83187 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 165.167-15 chr15 63332852 63333099 + 1 NA intron (NM_001218, intron 8 of 10) L2c|LINE|L2 48871 NM_001218 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 188.667-33 chr3 150865571 150865794 + 1 NA Intergenic Intergenic 39757 NM_001351281 646951 Hs.380222 NM_001351281 MINDY4B C3orf76|FAM188B2 MINDY family member 4B protein-coding 236.833-3 chr11 130588736 130589232 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -77751 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 305.833-10 chr2 77388909 77389260 + 1 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 133292 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 209.667-30 chr3 182619333 182619763 + 1 NA Intergenic AluSx1|SINE|Alu -112424 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 225.167-6 chr11 81005825 81006157 + 1 NA Intergenic Intergenic -243188 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 178.667-26 chr21 32657597 32657848 + 1 NA exon (NM_001160306, exon 18 of 28) exon (NM_001160306, exon 18 of 28) -44851 NM_001350335 56683 Hs.5811 NM_017835 ENSG00000159079 CFAP298 C21orf48|C21orf59|CILD26|FBB18|Kur cilia and flagella associated protein 298 protein-coding 263.333-10 chr17 63035904 63036241 + 1 NA intron (NM_025185, intron 2 of 25) L1ME1|LINE|L1 69837 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 230.667-17 chr3 63993574 63993834 + 1 NA intron (NM_001177387, intron 10 of 12) intron (NM_001177387, intron 10 of 12) -10318 NR_038286 100507062 Hs.152536 NR_038286 ENSG00000239653 PSMD6-AS2 - PSMD6 antisense RNA 2 ncRNA 247.667-3 chr1 241076434 241076888 + 1 NA intron (NM_001350116, intron 3 of 16) intron (NM_001350116, intron 3 of 16) -55611 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 174.5-6 chr11 114984869 114985217 + 1 NA Intergenic Intergenic 306516 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 259.333-6 chr10 94915233 94915774 + 1 NA Intergenic MER31-int|LTR|ERV1 -23155 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 269.333-7 chr15 74917309 74917716 + 1 NA Intergenic AluSz|SINE|Alu -10618 NR_135842 57184 Hs.367690 NM_020447 ENSG00000178761 FAM219B C15orf17 family with sequence similarity 219 member B protein-coding 167.5-27 chr3 17478034 17478345 + 1 NA intron (NM_014744, intron 3 of 21) intron (NM_014744, intron 3 of 21) 221831 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 201.333-18 chr16 7711076 7711428 + 1 NA 3' UTR (NM_001142334, exon 14 of 14) 3' UTR (NM_001142334, exon 14 of 14) 378407 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 279.5-21 chr5 103171761 103172290 + 1 NA intron (NM_001345878, intron 19 of 28) intron (NM_001345878, intron 19 of 28) 51724 NM_001345873 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 187.667-40 chr7 132048633 132048841 + 1 NA Intergenic L1M5|LINE|L1 138517 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 173.5-50 chr7 67788570 67788800 + 1 NA Intergenic Intergenic -231568 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 225.333-6 chr10 44753030 44753320 + 1 NA Intergenic Intergenic -158141 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 207.5-35 chr7 77324517 77324808 + 1 NA intron (NR_146937, intron 23 of 31) intron (NR_146937, intron 23 of 31) -90536 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 299.5-13 chr3 150432474 150432822 + 1 NA intron (NM_014779, intron 2 of 3) intron (NM_014779, intron 2 of 3) 24350 NR_130136 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 210.333-23 chr3 24171888 24172299 + 1 NA intron (NM_001354708, intron 4 of 9) MER103C|DNA|hAT-Charlie 20769 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 220.333-27 chr7 28032440 28032810 + 1 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -147832 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 293.333-22 chrX 68427360 68427756 + 1 NA intron (NM_002547, intron 2 of 24) MIRc|SINE|MIR 5937 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 172.5-30 chr20 45244234 45244553 + 1 NA Intergenic L1MB7|LINE|L1 10171 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 247.5-12 chr14 67077891 67078261 + 1 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -111364 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 375.5-2 chr17 68774005 68774386 + 1 NA Intergenic LTR13|LTR|ERVK 146041 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 511.5-3 chr2 25862088 25862794 + 1 NA intron (NM_018263, intron 1 of 11) intron (NM_018263, intron 1 of 11) 16046 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 236.333 chr1 206611612 206612010 + 1 NA intron (NM_006893, intron 1 of 14) intron (NM_006893, intron 1 of 14) 654 NM_006893 1939 Hs.497581 NM_006893 ENSG00000143486 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 275.667-13 chr2 120552879 120553398 + 1 NA Intergenic Intergenic -86789 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 165.333-24 chr2 19500168 19500503 + 1 NA Intergenic Charlie9|DNA|hAT-Charlie -141712 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 195.667-40 chr6 61795559 61795779 + 1 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 221539 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 204.667-17 chr19 36660487 36660751 + 1 NA intron (NM_001322821, intron 2 of 5) L1MEc|LINE|L1 6218 NM_001322823 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 288.5 chr1 12270170 12270690 + 1 NA intron (NM_015378, intron 16 of 69) AluSz|SINE|Alu 40400 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 241.333-19 chr2 160406899 160407211 + 1 NA TTS (NR_039946) TTS (NR_039946) 827 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 178.833-30 chr4 124666086 124666281 + 1 NA 3' UTR (NM_020337, exon 5 of 5) 3' UTR (NM_020337, exon 5 of 5) 46549 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 237.167-24 chr7 81792466 81792733 + 1 NA Intergenic Intergenic -22552 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 174.667-22 chr19 18058350 18058654 + 1 NA TTS (NM_001290023) TTS (NM_001290023) 28432 NM_005535 3594 Hs.567294 NM_005535 ENSG00000096996 IL12RB1 CD212|IL-12R-BETA1|IL12RB|IMD30 interleukin 12 receptor subunit beta 1 protein-coding 205.5-2 chr1 156740920 156741177 + 1 NA promoter-TSS (NM_024540) promoter-TSS (NM_024540) 40 NM_145729 79590 Hs.418233 NM_024540 ENSG00000143314 MRPL24 L24mt|MRP-L18|MRP-L24 mitochondrial ribosomal protein L24 protein-coding 179.667-3 chr10 75249789 75250112 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -13993 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 194.333-17 chr14 54652499 54652749 + 1 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 85012 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 266.333-14 chr3 11334998 11335426 + 1 NA intron (NM_001136031, intron 9 of 17) intron (NM_001136031, intron 9 of 17) 62815 NM_001144912 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 231.333-39 chrX 58238431 58238918 + 1 NA Intergenic HSAT4|Satellite|centr -328041 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 252.5-16 chr4 44850022 44850460 + 1 NA Intergenic LTR33|LTR|ERVL -123607 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 215.667-12 chr12 51262626 51262932 + 1 NA intron (NM_001031628, intron 2 of 3) intron (NM_001031628, intron 2 of 3) 7431 NM_001033873 57228 Hs.652389 NM_001031628 ENSG00000170545 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 226.333-11 chr18 49559261 49559547 + 1 NA Intergenic Intergenic -2653 NM_001308006 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 268.667-24 chr5 38327074 38327411 + 1 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -36256 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 184.667-49 chr8 74448028 74448357 + 1 NA intron (NM_001362931, intron 5 of 5) L1MB7|LINE|L1 97789 NM_018972 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 179.667-42 chr6 129624993 129625237 + 1 NA intron (NM_033515, intron 5 of 14) (TA)n|Simple_repeat|Simple_repeat 85062 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 163.333-57 chr8 18807391 18807590 + 1 NA intron (NM_015310, intron 4 of 15) BLACKJACK|DNA|hAT-Blackjack 1377 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 255.167-32 chr9 105694028 105694546 + 1 NA promoter-TSS (NM_018112) promoter-TSS (NM_018112) -254 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 210.667-17 chr14 101953535 101953958 + 1 NA Intergenic AluJb|SINE|Alu -10827 NM_001376 1778 Hs.614080 NM_001376 ENSG00000197102 DYNC1H1 CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein cytoplasmic 1 heavy chain 1 protein-coding 233.167-12 chr3 190400829 190401246 + 1 NA intron (NM_006580, intron 1 of 4) MIR|SINE|MIR 13165 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 205.667-40 chr8 79406279 79406639 + 1 NA Intergenic Intergenic 74271 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 173.667-35 chr3 132799641 132800013 + 1 NA intron (NR_002811, intron 4 of 10) intron (NR_002811, intron 4 of 10) -77368 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 212.667-15 chr16 69709209 69709602 + 1 NA promoter-TSS (NR_145753) promoter-TSS (NR_145753) -730 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 191.5-4 chr1 189937878 189938143 + 1 NA Intergenic MLT1G1|LTR|ERVL-MaLR 538000 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 401.833-2 chr19 9075412 9076103 + 1 NA Intergenic Intergenic -17488 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor family 1 subfamily M member 1 protein-coding 173.5-35 chr2 111977689 111978007 + 1 NA intron (NM_006343, intron 7 of 18) L1MEc|LINE|L1 -77421 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 237.5-23 chr2 147902411 147902733 + 1 NA intron (NM_001278579, intron 5 of 11) intron (NM_001278579, intron 5 of 11) 57543 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 223.667-23 chr16 10400434 10400806 + 1 NA intron (NM_024997, intron 1 of 11) L1M2|LINE|L1 14559 NR_045816 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 187.333-7 chr10 44321127 44321329 + 1 NA Intergenic L1MB7|LINE|L1 28478 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 182.167-15 chr2 196457028 196457565 + 1 NA intron (NM_001348768, intron 1 of 28) MIR3|SINE|MIR -95119 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 345.5-2 chr1 188124378 188124846 + 1 NA Intergenic MLT1G|LTR|ERVL-MaLR 680984 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 220.5-41 chr7 93444074 93444299 + 1 NA intron (NM_001164738, intron 7 of 12) intron (NM_001164738, intron 7 of 12) 38669 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 254.5-15 chr18 13791804 13792121 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -32187 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 299.833-8 chr15 79994621 79995086 + 1 NA Intergenic Intergenic -23657 NM_001114735 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 205.5-6 chr11 33997599 33997828 + 1 NA Intergenic Intergenic -54018 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 265.667-9 chr12 87230144 87230612 + 1 NA Intergenic Intergenic -100361 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 217.333-2 chr1 154408100 154408371 + 1 NA intron (NM_001206866, intron 1 of 6) intron (NM_001206866, intron 1 of 6) -1671 NR_147855 101928101 Hs.617089 NR_147855 ENSG00000228013 IL6R-AS1 - IL6R antisense RNA 1 ncRNA 404.667-5 chr2 179529723 179530386 + 1 NA intron (NM_001352811, intron 4 of 10) intron (NM_001352811, intron 4 of 10) 32534 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 232.667-14 chr17 27411657 27411929 + 1 NA Intergenic Intergenic -6212 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 229.667-9 chr14 49901241 49901525 + 1 NA Intergenic AluY|SINE|Alu 8301 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 262.667-29 chr6 54051625 54052113 + 1 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -4275 NR_046710 100873951 NR_046710 MLIP-AS1 - MLIP antisense RNA 1 ncRNA 213.167-4 chr11 6378673 6379046 + 1 NA Intergenic Intergenic -11615 NR_027400 6609 Hs.498173 NM_000543 ENSG00000166311 SMPD1 ASM|ASMASE|NPD sphingomyelin phosphodiesterase 1 protein-coding 206.333-28 chr5 31824679 31825016 + 1 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) 111312 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 203.5-30 chr3 152796288 152796759 + 1 NA Intergenic L1PA16|LINE|L1 -38608 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 200.667-54 chr8 62531140 62531469 + 1 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 282450 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 339.667-3 chr10 93945577 93945997 + 1 NA Intergenic Intergenic 16128 NR_002319 266971 Hs.149255 NR_002319 ENSG00000180764 PIPSL PIP5K1L1|PIP5K1P3|PSMD4P2|bA429H9.1 PIP5K1A and PSMD4 like (pseudogene) pseudo 228.833-12 chr3 124989259 124989575 + 1 NA intron (NM_020733, intron 14 of 16) intron (NM_020733, intron 14 of 16) -54666 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 420.5-11 chr8 78972723 78973358 + 1 NA Intergenic Intergenic 135511 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 203.667-8 chr10 83872880 83873156 + 1 NA Intergenic Intergenic -195929 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 217.667-33 chr6 22603519 22603778 + 1 NA Intergenic AluJo|SINE|Alu 34082 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 246.333-9 chr11 99348720 99349121 + 1 NA intron (NM_001243271, intron 2 of 20) L2a|LINE|L2 -207225 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 229.667-38 chr6 44594222 44594500 + 1 NA Intergenic Intergenic -42480 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 187.333-16 chr12 28507290 28507590 + 1 NA intron (NM_001352082, intron 13 of 13) MER20|DNA|hAT-Charlie -316702 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 180.667-37 chr5 107186130 107186419 + 1 NA Intergenic Intergenic -175260 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 252.5-12 chr19 30391905 30392354 + 1 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 19745 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 282.167-7 chr2 28240953 28241482 + 1 NA intron (NM_199193, intron 9 of 13) L1MC5a|LINE|L1 -34256 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 182.667-32 chr3 39403332 39403670 + 1 NA Intergenic AluSz|SINE|Alu -3219 NM_001304288 3921 Hs.449909 NM_002295 ENSG00000168028 RPSA 37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40 ribosomal protein SA protein-coding 232.833-23 chr3 107206137 107206422 + 1 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 34359 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 304.333-7 chr15 46091594 46092274 + 1 NA Intergenic Intergenic 386739 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 303.333 chr1 174950910 174951479 + 1 NA intron (NR_121196, intron 1 of 5) intron (NR_121196, intron 1 of 5) 3067 NR_121196 101928696 Hs.666680 NR_121196 ENSG00000229531 LOC101928696 - uncharacterized LOC101928696 ncRNA 184.5-28 chr20 37616152 37616454 + 1 NA Intergenic L2a|LINE|L2 6816 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 177.167-9 chr12 66409530 66409722 + 1 NA intron (NM_001366722, intron 15 of 24) L1MA2|LINE|L1 107081 NM_033647 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 290.167-18 chr8 38830176 38831025 + 1 NA intron (NM_001352791, intron 4 of 11) intron (NM_001352791, intron 4 of 11) 25150 NM_001352791 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 188.167-32 chr6 36261301 36261597 + 1 NA intron (NM_173676, intron 1 of 7) intron (NM_173676, intron 1 of 7) -9011 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 229.5-31 chr4 127882943 127883433 + 1 NA intron (NM_001190799, intron 2 of 14) intron (NM_001190799, intron 2 of 14) 1944 NM_001190801 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 223.667-50 chr9 26743390 26743854 + 1 NA Intergenic Intergenic 149180 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 207.5-11 chr12 119938838 119939073 + 1 NA Intergenic AluSz6|SINE|Alu -50281 NM_001367886 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 219.667-11 chr17 9987818 9988235 + 1 NA intron (NM_201432, intron 2 of 13) intron (NM_201432, intron 2 of 13) -28531 NM_003644 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 319.667-9 chr5 104930873 104931397 + 1 NA Intergenic Intergenic -168339 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 169.333-31 chr2 54287394 54287663 + 1 NA intron (NM_001320589, intron 4 of 4) MLT1G1|LTR|ERVL-MaLR -31299 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 329.167-15 chr7 17821226 17821680 + 1 NA intron (NM_001350862, intron 18 of 25) intron (NM_001350862, intron 18 of 25) 119041 NM_001350863 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 206.667-58 chr8 129387618 129387972 + 1 NA intron (NR_130918, intron 1 of 2) MER58C|DNA|hAT-Charlie 96347 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 200.333-38 chr7 30162852 30163350 + 1 NA TTS (NM_152793) TTS (NM_152793) 28115 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 217.667-6 chr1 200075038 200075376 + 1 NA intron (NM_205860, intron 5 of 7) intron (NM_205860, intron 5 of 7) 32382 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 186.667-38 chr20 54092338 54092630 + 1 NA Intergenic Intergenic -21719 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 338.833 chr1 202135144 202135756 + 1 NA intron (NM_001256129, intron 4 of 5) intron (NM_001256129, intron 4 of 5) 9287 NM_138795 127829 Hs.497399 NM_138795 ENSG00000143862 ARL8A ARL10B|GIE2 ADP ribosylation factor like GTPase 8A protein-coding 295.667-15 chr4 21007081 21007450 + 1 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -23256 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 207.667-41 chr6 115643203 115643418 + 1 NA intron (NR_134602, intron 1 of 3) L1MC2|LINE|L1 525 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 224.5-44 chr9 37280034 37280349 + 1 NA intron (NM_001289120, intron 2 of 8) L1M5|LINE|L1 -142505 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 200.5-16 chr15 75998246 75998758 + 1 NA intron (NM_138573, intron 3 of 5) L2a|LINE|L2 13922 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 186.667-61 chr8 22622816 22623009 + 1 NA intron (NR_156436, intron 8 of 9) intron (NR_156436, intron 8 of 9) 17870 NM_001363068 57805 Hs.744848 NM_021174 ENSG00000158941 CCAR2 DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC cell cycle and apoptosis regulator 2 protein-coding 208.333-22 chr2 147096947 147097257 + 1 NA Intergenic Intergenic 510045 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 360.5-11 chr9 30926109 30926587 + 1 NA Intergenic L1ME3Cz|LINE|L1 455142 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 172.333-25 chr16 63538939 63539273 + 1 NA Intergenic L1ME4a|LINE|L1 -1502668 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 241.5-16 chr4 82703084 82703404 + 1 NA intron (NM_001037582, intron 2 of 4) intron (NM_001037582, intron 2 of 4) 50186 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 173.667-42 chr6 74235617 74235964 + 1 NA intron (NR_110856, intron 1 of 3) L1MA8|LINE|L1 166339 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 249.333-20 chr3 87356963 87357426 + 1 NA Intergenic Intergenic -80610 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 203.333-44 chr4 72967346 72967684 + 1 NA Intergenic MIRb|SINE|MIR 102201 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 232.833-7 chr1 207654102 207654527 + 1 NA intron (NM_175710, intron 1 of 11) intron (NM_175710, intron 1 of 11) 9181 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 180.5-39 chr6 129754202 129754406 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -44127 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 234.833-20 chr4 31782362 31782822 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -214787 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 250.833-4 chr11 112743756 112744296 + 1 NA Intergenic Intergenic -188224 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 231.5-3 chr10 62283183 62283575 + 1 NA Intergenic UCON33|DNA|TcMar-Tigger -14535 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 177.667-15 chr14 69504844 69505050 + 1 NA intron (NM_001161498, intron 6 of 12) intron (NM_001161498, intron 6 of 12) 20219 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 189.667-21 chr15 83020556 83020915 + 1 NA exon (NM_025238, exon 6 of 8) exon (NM_025238, exon 6 of 8) -9096 NM_001160114 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 234.833-26 chr8 139169449 139169902 + 1 NA Intergenic Intergenic -255634 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 199.333-44 chr7 51140998 51141528 + 1 NA intron (NM_015198, intron 5 of 12) intron (NM_015198, intron 5 of 12) 175546 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 170.333-29 chr2 75508718 75509187 + 1 NA intron (NM_032181, intron 3 of 3) intron (NM_032181, intron 3 of 3) -15116 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 327.5-2 chr10 62123941 62124602 + 1 NA Intergenic L1MA5|LINE|L1 74914 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 258.167-14 chr17 11024449 11025067 + 1 NA Intergenic Intergenic -186671 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 275.667-4 chr12 60531828 60532417 + 1 NA Intergenic L1MA7|LINE|L1 842752 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 168.5-9 chr10 107762646 107762895 + 1 NA Intergenic L1MCa|LINE|L1 306523 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 195.167-31 chr3 49277250 49277474 + 1 NA promoter-TSS (NM_198562) promoter-TSS (NM_198562) -130 NM_198562 375341 Hs.403828 NM_198562 ENSG00000188315 C3orf62 - chromosome 3 open reading frame 62 protein-coding 169.667-38 chr2 152754148 152754502 + 1 NA intron (NR_146431, intron 3 of 3) L1MB5|LINE|L1 35688 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 245.333-20 chr3 4228903 4229422 + 1 NA Intergenic Intergenic -74142 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 282.333-10 chr5 20678883 20679287 + 1 NA intron (NR_149120, intron 3 of 11) Tigger7|DNA|TcMar-Tigger -63550 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 290.333-18 chr5 35608830 35609376 + 1 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -8760 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 177.333-7 chr12 130633351 130633572 + 1 NA intron (NM_001351226, intron 1 of 21) intron (NM_001351226, intron 1 of 21) 459 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 208.833-11 chr16 88737122 88737534 + 1 NA intron (NM_001142864, intron 10 of 50) intron (NM_001142864, intron 10 of 50) -5439 NR_120387 339059 Hs.449817 NR_120387 ENSG00000182376 LOC339059 - uncharacterized LOC339059 ncRNA 246.333-28 chr4 57404901 57405205 + 1 NA Intergenic Intergenic -20819 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 350.333-10 chr9 25793726 25794480 + 1 NA intron (NR_121604, intron 3 of 5) intron (NR_121604, intron 3 of 5) 14047 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 179.667-9 chr14 53095894 53096288 + 1 NA intron (NM_030637, intron 2 of 11) intron (NM_030637, intron 2 of 11) 57232 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 374.333-5 chr8 94492470 94493071 + 1 NA exon (NM_015496, exon 21 of 24) exon (NM_015496, exon 21 of 24) -17655 NM_012415 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B protein-coding 198.833-24 chr5 4760554 4760765 + 1 NA Intergenic Intergenic -12822 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 296.5-9 chr12 15962604 15962920 + 1 NA intron (NM_015954, intron 4 of 8) (CTTT)n|Simple_repeat|Simple_repeat 51430 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 231.833-4 chr14 75293933 75294202 + 1 NA promoter-TSS (NR_038421) promoter-TSS (NR_038421) -337 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 183.833-13 chr2 163668025 163668208 + 1 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 67892 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 167.667-32 chr3 196628622 196628938 + 1 NA Intergenic AluJb|SINE|Alu 3807 NR_132101 101929769 Hs.518527 NR_132101 ENSG00000232065 LINC01063 - long intergenic non-protein coding RNA 1063 ncRNA 240.5-13 chr2 85750493 85750936 + 1 NA Intergenic Intergenic -3277 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding 305.667-6 chr17 19969590 19970062 + 1 NA intron (NM_007202, intron 1 of 14) intron (NM_007202, intron 1 of 14) 8002 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 282.5-18 chr7 85412890 85413300 + 1 NA Intergenic Intergenic -8027 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 181.5-35 chr4 121710112 121710323 + 1 NA Intergenic Intergenic -13237 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 330.5 chr10 95993163 95993642 + 1 NA intron (NM_001349008, intron 22 of 34) intron (NM_001349008, intron 22 of 34) -6689 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 275.333-15 chr5 11752133 11752414 + 1 NA intron (NM_001288717, intron 1 of 20) L1PA15|LINE|L1 152173 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 273.5-7 chr12 16076312 16076731 + 1 NA Intergenic Intergenic 165189 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 228.5-6 chr14 84063849 84064093 + 1 NA Intergenic Intergenic -1207961 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 251.667-16 chr16 10038083 10038509 + 1 NA intron (NM_001134408, intron 2 of 13) MLT1A0|LTR|ERVL-MaLR 143771 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 194.333-21 chr18 3014312 3014586 + 1 NA Intergenic AluSq|SINE|Alu -2502 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 173.5-43 chr4 80618857 80619252 + 1 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 283334 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 300.333-13 chr8 121348975 121349470 + 1 NA Intergenic Intergenic -290124 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 418.833 chr14 74257177 74257659 + 1 NA intron (NM_182894, intron 3 of 4) intron (NM_182894, intron 3 of 4) 17969 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 218.333-28 chr7 124896676 124896975 + 1 NA intron (NM_001042594, intron 5 of 17) intron (NM_001042594, intron 5 of 17) 33000 NM_015450 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 177.333-23 chr3 17578435 17578894 + 1 NA intron (NM_001349089, intron 1 of 20) intron (NM_001349089, intron 1 of 20) 121356 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 201.167-21 chr22 46556715 46557316 + 1 NA Intergenic L1MEd|LINE|L1 -19395 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 200.667-55 chr8 70006329 70006704 + 1 NA Intergenic AluJo|SINE|Alu 64736 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 181.167-12 chr12 7907191 7907709 + 1 NA Intergenic AluSg|SINE|Alu -16254 NM_001286237 144195 Hs.655169 NM_153449 ENSG00000173262 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 member 14 protein-coding 213.667-22 chr2 40231022 40231276 + 1 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 199155 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 371.167-8 chr7 73606963 73607393 + 1 NA intron (NM_032951, intron 4 of 16) CpG 17344 NM_032951 51085 Hs.647055 NM_032951 ENSG00000009950 MLXIPL CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein like protein-coding 260.667-16 chr16 35475822 35476284 + 1 NA Intergenic MER57F|LTR|ERV1 4543 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 195.333-4 chr10 19314537 19314811 + 1 NA intron (NM_001142308, intron 21 of 39) MER58A|DNA|hAT-Charlie 265873 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 239.667-17 chr17 27506272 27506602 + 1 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 34473 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 229.833-7 chr12 48183295 48183584 + 1 NA promoter-TSS (NM_001013635) promoter-TSS (NM_001013635) -205 NM_001013635 387856 Hs.251699 NM_001013635 ENSG00000177875 CCDC184 C12orf68 coiled-coil domain containing 184 protein-coding 210.5-16 chr16 8194754 8195048 + 1 NA Intergenic Intergenic 394937 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 246.5-16 chr16 59682781 59683154 + 1 NA Intergenic MLT1E|LTR|ERVL-MaLR 72224 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 165.5-13 chr14 67571453 67571710 + 1 NA intron (NM_020715, intron 9 of 28) intron (NM_020715, intron 9 of 28) 28687 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 376.5-7 chrX 24104965 24105542 + 1 NA Intergenic AluSq2|SINE|Alu -43729 NM_001330327 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein X-linked protein-coding 252.667-8 chr11 93789202 93789501 + 1 NA intron (NM_004268, intron 2 of 11) MIRb|SINE|MIR 5069 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|SRB4|TRAP80 mediator complex subunit 17 protein-coding 224.833-12 chr16 69645835 69646099 + 1 NA intron (NM_138713, intron 3 of 14) intron (NM_138713, intron 3 of 14) 62708 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 219.667-19 chr2 164814278 164814655 + 1 NA intron (NM_001278458, intron 2 of 16) L2b|LINE|L2 -26283 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 335.167-6 chr2 46955043 46955543 + 1 NA intron (NM_001288951, intron 2 of 20) intron (NM_001288951, intron 2 of 20) -13438 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 251.667-36 chr8 125222197 125222775 + 1 NA intron (NM_001349486, intron 5 of 7) L1MA7|LINE|L1 130626 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 268.667-25 chr5 141072323 141072799 + 1 NA intron (NR_105056, intron 1 of 3) L1MEd|LINE|L1 5470 NR_105056 101926905 Hs.570900 NR_105056 LOC101926905 - uncharacterized LOC101926905 ncRNA 188.5-45 chr7 14207282 14207477 + 1 NA intron (NM_001350717, intron 22 of 24) MLT1N2|LTR|ERVL-MaLR -215954 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 170.333-56 chr9 127955820 127956105 + 1 NA intron (NM_001035254, intron 1 of 10) intron (NM_001035254, intron 1 of 10) -5248 NM_203305 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 264.5-18 chr3 87996423 87996811 + 1 NA Intergenic Intergenic 14041 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 322.167-3 chr11 57345539 57346043 + 1 NA intron (NM_002559, intron 1 of 11) intron (NM_002559, intron 1 of 11) 7439 NM_002559 5024 Hs.146738 NM_002559 ENSG00000109991 P2RX3 P2X3 purinergic receptor P2X 3 protein-coding 199.667-46 chr8 105646026 105646355 + 1 NA intron (NM_001362837, intron 5 of 7) MER72|LTR|ERV1 326647 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 201.5-31 chr6 67566707 67567031 + 1 NA Intergenic Intergenic -488482 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 209.667-2 chr1 86741878 86742152 + 1 NA intron (NM_016009, intron 7 of 8) intron (NM_016009, intron 7 of 8) 37439 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 540.667-7 chr9 4679025 4679898 + 1 NA promoter-TSS (NM_017913) promoter-TSS (NM_017913) 19 NR_121598 101929351 Hs.745404 NR_121597 ENSG00000273061 CDC37L1-DT CDC37L1-AS1 CDC37L1 divergent transcript ncRNA 176.5-13 chr18 6300537 6300775 + 1 NA intron (NM_001365769, intron 4 of 16) intron (NM_001365769, intron 4 of 16) 43912 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 168.833-16 chr4 41696724 41696906 + 1 NA intron (NM_001330786, intron 22 of 22) intron (NM_001330786, intron 22 of 22) 52155 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 241.333-3 chr10 16642069 16642460 + 1 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -120385 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 187.667-30 chr2 208875307 208875685 + 1 NA Intergenic L1MEi|LINE|L1 332854 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 193.667-13 chr11 84159223 84159484 + 1 NA intron (NM_001142699, intron 9 of 27) L2a|LINE|L2 113927 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 230.333-19 chr2 54672001 54672346 + 1 NA TTS (NM_003128) TTS (NM_003128) -52839 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 201.5-25 chr2 229919478 229919744 + 1 NA intron (NM_001348325, intron 1 of 42) intron (NM_001348325, intron 1 of 42) 2068 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 383.167-5 chr2 38535847 38536724 + 1 NA Intergenic CpG -20545 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 346.5-7 chr2 69823790 69824252 + 1 NA intron (NM_001320700, intron 12 of 12) FRAM|SINE|Alu -5639 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 217.167-19 chr5 149267858 149268279 + 1 NA Intergenic L2a|LINE|L2 -3770 NM_001323063 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 253.333-16 chr21 18917196 18917737 + 1 NA Intergenic Intergenic -157654 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 190.667-29 chr20 7036276 7036716 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR 217706 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 210.333-12 chr14 59921494 59921865 + 1 NA intron (NR_075071, intron 1 of 32) L2c|LINE|L2 1966 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 346.667-7 chr18 21479558 21479967 + 1 NA intron (NM_001142966, intron 17 of 32) AluJr|SINE|Alu 120942 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 197.5-10 chr14 42755317 42755621 + 1 NA Intergenic L1ME3A|LINE|L1 1148613 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 194.667-44 chr4 99960310 99960737 + 1 NA intron (NR_125923, intron 1 of 3) L1PB2|LINE|L1 10029 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 301.5-17 chr5 146564330 146564708 + 1 NA Intergenic Intergenic -48406 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 221.333-5 chr12 130559051 130559450 + 1 NA intron (NM_001351226, intron 2 of 21) L1MA7|LINE|L1 69206 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 307.333-18 chr8 119437673 119438146 + 1 NA Intergenic MER58A|DNA|hAT-Charlie 21463 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 185.5-6 chr10 120422631 120422946 + 1 NA Intergenic L2b|LINE|L2 -34166 NR_134516 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 227.333-20 chr2 84630601 84631022 + 1 NA intron (NM_001370, intron 29 of 76) L1MC5a|LINE|L1 114356 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 352.667-12 chrX 45514619 45515292 + 1 NA intron (NR_104644, intron 2 of 3) L4_B_Mam|LINE|RTE-X 9567 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 202.667-29 chr21 23894704 23895075 + 1 NA Intergenic Intergenic 426488 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 191.333-40 chr7 28840407 28840620 + 1 NA Intergenic Intergenic 117817 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 169.333-21 chr12 82650760 82651301 + 1 NA Intergenic LTR104_Mam|LTR|Gypsy -35876 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 205.5-9 chr11 115305529 115305768 + 1 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -27929 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 246.5-25 chr4 43452238 43452562 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 40143 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 184.333-35 chr7 7262643 7263036 + 1 NA intron (NR_108073, intron 2 of 3) intron (NR_108073, intron 2 of 3) 7685 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 187.333-25 chr2 72399624 72399987 + 1 NA intron (NM_001321729, intron 18 of 22) L1PB4|LINE|L1 -251943 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 178.833-15 chr16 9258593 9258888 + 1 NA Intergenic Intergenic -96848 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 323.333-7 chr12 28542118 28542485 + 1 NA intron (NM_001352082, intron 13 of 13) intron (NM_001352082, intron 13 of 13) -351563 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 166.333-2 chr1 77944364 77944711 + 1 NA TTS (NM_144573) TTS (NM_144573) 34535 NR_146539 8880 Hs.567380 NM_003902 ENSG00000162613 FUBP1 FBP|FUBP|hDH V far upstream element binding protein 1 protein-coding 209.5-13 chr14 29488572 29488993 + 1 NA Intergenic L1M5|LINE|L1 438314 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 205.667-27 chr22 36486537 36486881 + 1 NA TTS (NM_001102371) TTS (NM_001102371) -5069 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2|TXN thioredoxin 2 protein-coding 199.167-5 chr14 71751433 71751749 + 1 NA Intergenic AluJb|SINE|Alu 165293 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 288.833-14 chr5 28358466 28359086 + 1 NA Intergenic Intergenic -71111 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 260.667-13 chr14 75592645 75593047 + 1 NA intron (NM_017791, intron 1 of 9) MSTB2-int|LTR|ERVL-MaLR -12694 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 220.5-4 chr10 92581795 92582185 + 1 NA Intergenic AluSc5|SINE|Alu -7895 NM_001322794 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 229.333-15 chr14 49768931 49769454 + 1 NA intron (NM_014315, intron 1 of 12) intron (NM_014315, intron 1 of 12) 1039 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 186.167-6 chr12 85424519 85425007 + 1 NA Intergenic Intergenic 144543 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 260.667-9 chr11 93741311 93742129 + 1 NA promoter-TSS (NM_001351989) promoter-TSS (NM_001351989) 48 NM_001351992 28970 Hs.8360 NM_014039 ENSG00000182919 C11orf54 PTD012|PTOD012 chromosome 11 open reading frame 54 protein-coding 174.5-42 chr9 96245571 96245776 + 1 NA promoter-TSS (NR_146524) promoter-TSS (NR_146524) -790 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 265.667-25 chr8 85304470 85304881 + 1 NA Intergenic L2b|LINE|L2 37039 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 243.667-8 chr12 121627736 121628130 + 1 NA intron (NM_032790, intron 2 of 2) AluSg|SINE|Alu 1383 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 197.667-20 chr14 74039898 74040314 + 1 NA intron (NM_025057, intron 4 of 11) AluJb|SINE|Alu 20757 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 223.667-6 chr10 25874833 25875208 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X 58690 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 186.333-10 chr12 56852032 56852245 + 1 NA Intergenic L1MB7|LINE|L1 82270 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 240.333-18 chr5 3914903 3915341 + 1 NA Intergenic L3|LINE|CR1 319290 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 382.5-9 chr5 133351070 133351531 + 1 NA intron (NM_015082, intron 4 of 15) L1MEd|LINE|L1 76406 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 210.667-16 chr14 75824542 75824800 + 1 NA intron (NM_015072, intron 28 of 31) L1MB2|LINE|L1 157324 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 180.5-35 chr5 135765935 135766268 + 1 NA intron (NM_001349335, intron 3 of 10) SATR1|Satellite|Satellite 36974 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 216.5-37 chr5 112150940 112151340 + 1 NA intron (NM_001347887, intron 22 of 23) L1MEd|LINE|L1 -9386 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 188.667-37 chr4 41887486 41887725 + 1 NA Intergenic Intergenic -4994 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 208.167-6 chr10 62040354 62040687 + 1 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -8837 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 163.667-32 chr20 40197844 40198089 + 1 NA Intergenic Intergenic 193505 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 388.333-8 chr2 110904427 110904931 + 1 NA intron (NM_001371254, intron 10 of 18) MER74A|LTR|ERVL 172106 NM_001371254 180.333-16 chr13 54789443 54789809 + 1 NA Intergenic LOR1b|LTR|ERV1 -384828 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 293.333-20 chr8 125685711 125686235 + 1 NA Intergenic Intergenic 253764 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 264.667-3 chr12 51217636 51218063 + 1 NA promoter-TSS (NM_001368008) promoter-TSS (NM_001368008) 213 NM_001351088 5463 Hs.555886 NM_002702 ENSG00000184271 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding 250.833-15 chr7 86815223 86815861 + 1 NA intron (NM_001363522, intron 3 of 4) intron (NM_001363522, intron 3 of 4) 150357 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 228.5-3 chr14 46438232 46438627 + 1 NA intron (NR_102701, intron 4 of 5) L1PA7|LINE|L1 -32930 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 171.667-21 chr17 52109065 52109300 + 1 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 49532 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 226.5-8 chr10 92676081 92676354 + 1 NA Intergenic AluJb|SINE|Alu -13738 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 384.667-7 chr4 82830407 82831141 + 1 NA intron (NM_001300744, intron 19 of 23) intron (NM_001300744, intron 19 of 23) -31917 NM_024906 79966 Hs.379191 NM_024906 ENSG00000145284 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 340.667-3 chr10 78304503 78304872 + 1 NA Intergenic Intergenic 37345 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 199.667-27 chr3 101461592 101461901 + 1 NA intron (NM_020654, intron 3 of 23) L1MB5|LINE|L1 51466 NM_001282803 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 183.5-37 chr5 36878422 36878814 + 1 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 1849 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 195.667-11 chr12 119037144 119037493 + 1 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 55777 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 181.333-42 chr8 124075142 124075437 + 1 NA intron (NM_001039112, intron 31 of 40) Tigger3b|DNA|TcMar-Tigger -34507 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 193.5-49 chr8 82245352 82245581 + 1 NA Intergenic Intergenic -403180 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 215.667-25 chr20 38187496 38187747 + 1 NA Intergenic MLT2D|LTR|ERVL -21113 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 300.5-21 chr5 157188349 157188907 + 1 NA intron (NM_005546, intron 1 of 16) AluSx3|SINE|Alu 7732 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 206.667-43 chr6 80975405 80975947 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR 777005 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 236.333-5 chr12 102811342 102811694 + 1 NA non-coding (NR_033855, exon 5 of 5) non-coding (NR_033855, exon 5 of 5) 12881 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 190.667-49 chr6 53611825 53612067 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -16434 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 197.667-48 chr9 68777553 68777911 + 1 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) -2333 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 214.167-21 chr4 33024577 33024839 + 1 NA Intergenic MIRb|SINE|MIR 673670 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 312.667-5 chr12 40104676 40105196 + 1 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 1145 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 189.5-34 chr6 73060764 73060993 + 1 NA intron (NM_001160132, intron 3 of 13) L1MC5a|LINE|L1 82636 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 248.5-3 chr1 108681410 108681741 + 1 NA Intergenic Intergenic -10735 NM_001349769 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 174.667-3 chr1 109548178 109548574 + 1 NA promoter-TSS (NM_006496) promoter-TSS (NM_006496) -239 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 179.5-20 chr17 28780841 28781174 + 1 NA intron (NM_001288636, intron 3 of 5) L1MA8|LINE|L1 31464 NM_001288634 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 163.667-37 chr3 142993058 142993404 + 1 NA intron (NR_125393, intron 2 of 4) L1MB3|LINE|L1 8236 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 231.667-25 chr6 144581010 144581314 + 1 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 175507 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 253.333-41 chr9 129458373 129458647 + 1 NA Intergenic Intergenic -30150 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 258.5-27 chr7 99219982 99220407 + 1 NA Intergenic Intergenic -12705 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 167.5-8 chr10 32413772 32414058 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR 32141 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 245.5-18 chr3 106017656 106017907 + 1 NA Intergenic Intergenic -148380 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 274.5-13 chr22 44799163 44799683 + 1 NA intron (NM_181335, intron 2 of 11) intron (NM_181335, intron 2 of 11) 46865 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 271.5 chr1 9943159 9943827 + 1 NA promoter-TSS (NM_001316975) promoter-TSS (NM_001316975) 18 NM_022787 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 242.5-20 chr18 8141952 8142556 + 1 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 224780 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 261.333-6 chr17 54748671 54749208 + 1 NA Intergenic L1M1|LINE|L1 -151752 NM_001321175 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 180.167-8 chr14 22088451 22088841 + 1 NA Intergenic Intergenic 344107 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 262.5-5 chr11 30805410 30805986 + 1 NA Intergenic MER33|DNA|hAT-Charlie 186988 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 171.167-9 chr11 47646415 47646961 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -4034 NM_001317232 23788 Hs.269944 NM_014342 ENSG00000109919 MTCH2 HSPC032|MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 170.667-55 chr8 139494677 139495011 + 1 NA Intergenic Intergenic 208279 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 243.167-7 chr14 89931924 89932392 + 1 NA intron (NM_001284269, intron 4 of 5) intron (NM_001284269, intron 4 of 5) 22378 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 175.833-26 chr21 29896369 29896679 + 1 NA intron (NM_000830, intron 1 of 16) L2a|LINE|L2 43472 NM_001330993 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 202.5-43 chr5 162887125 162887508 + 1 NA Intergenic Intergenic -550255 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 209.833-8 chr13 84643057 84643502 + 1 NA Intergenic Intergenic -140375 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 327.333 chr1 176043078 176043605 + 1 NA intron (NM_022457, intron 13 of 19) intron (NM_022457, intron 13 of 19) -74801 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 244.5-6 chr12 122190838 122191117 + 1 NA intron (NM_152759, intron 5 of 11) FRAM|SINE|Alu 7854 NM_001098519 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 297.5-20 chr6 125315294 125315654 + 1 NA Intergenic L3|LINE|CR1 -13507 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 187.833-6 chr10 73926771 73926958 + 1 NA Intergenic Intergenic -4087 NR_160937 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 273.5-13 chr2 63280362 63280806 + 1 NA intron (NR_148704, intron 14 of 18) L1PB1|LINE|L1 157423 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 219.5-19 chr3 108472025 108472439 + 1 NA intron (NM_014981, intron 13 of 41) intron (NM_014981, intron 13 of 41) 57090 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 207.333-47 chr7 94972141 94972432 + 1 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 62388 NM_001166162 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 273.667-15 chr4 120874267 120874700 + 1 NA intron (NM_001300824, intron 2 of 13) intron (NM_001300824, intron 2 of 13) 48383 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 247.333-17 chr4 30295576 30295992 + 1 NA Intergenic Intergenic -424585 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 332.5-2 chr11 14976753 14977234 + 1 NA Intergenic Intergenic -4642 NR_125898 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 275.833-4 chr1 226727032 226727521 + 1 NA intron (NM_002221, intron 2 of 7) intron (NM_002221, intron 2 of 7) 11899 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 239.167-24 chr22 34413116 34413549 + 1 NA Intergenic L1MA9|LINE|L1 -490444 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 280.833-8 chr2 63816420 63816714 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -24397 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 233.667-13 chr15 70622659 70623007 + 1 NA Intergenic L1MEg|LINE|L1 7286 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 171.333-54 chr8 108496736 108496960 + 1 NA Intergenic Intergenic 53224 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 385.667-2 chr11 8931240 8931858 + 1 NA intron (NM_020643, intron 2 of 6) AluSg7|SINE|Alu 1398 NM_020643 56673 Hs.277349 NM_020643 ENSG00000176029 C11orf16 - chromosome 11 open reading frame 16 protein-coding 264.667-15 chr6 80235241 80235578 + 1 NA intron (NR_134945, intron 9 of 10) MIR|SINE|MIR 128738 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 285.167-4 chr10 107028795 107029188 + 1 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 135715 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 321.333-19 chrX 100614538 100614880 + 1 NA Intergenic L1ME4b|LINE|L1 22097 NM_003270 7105 Hs.43233 NM_003270 ENSG00000000003 TSPAN6 T245|TM4SF6|TSPAN-6 tetraspanin 6 protein-coding 270.333-14 chr8 111123680 111124073 + 1 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) -96443 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 169.667-34 chr2 64751444 64751634 + 1 NA Intergenic CpG -97626 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 166.167-5 chr1 223708221 223708510 + 1 NA intron (NM_001146068, intron 1 of 20) AluSq2|SINE|Alu -4174 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 210.667-5 chr10 61112208 61112685 + 1 NA Intergenic L1MEg|LINE|L1 96171 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 288.167-18 chr7 120272332 120272799 + 1 NA promoter-TSS (NM_012281) promoter-TSS (NM_012281) -610 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 228.167-8 chr12 44327894 44328413 + 1 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 492072 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 231.333-9 chr10 61784754 61785021 + 1 NA Intergenic LTR67B|LTR|ERVL -116812 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 285.667-12 chr2 33453759 33454180 + 1 NA intron (NM_170672, intron 2 of 18) MLT1B|LTR|ERVL-MaLR -4086 NM_001349979 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 186.667-17 chr10 87864787 87865138 + 1 NA intron (NM_001304717, intron 2 of 9) intron (NM_001304717, intron 2 of 9) 1337 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 247.5-27 chr20 5113162 5113433 + 1 NA promoter-TSS (NM_014145) promoter-TSS (NM_014145) -210 NM_001330984 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 216.5-24 chr2 57108505 57109087 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -798855 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 210.833-19 chr20 48189294 48189611 + 1 NA Intergenic L1MB7|LINE|L1 -170459 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 289.5-8 chr3 16400558 16401170 + 1 NA intron (NM_015150, intron 4 of 9) intron (NM_015150, intron 4 of 9) 112835 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 182.667-23 chr19 17932774 17933060 + 1 NA promoter-TSS (NM_001136203) promoter-TSS (NM_001136203) -98 NM_001136203 115098 Hs.100043 NM_138442 ENSG00000007080 CCDC124 - coiled-coil domain containing 124 protein-coding 256.167-23 chr8 142687766 142688170 + 1 NA Intergenic PABL_A-int|LTR|ERV1 7473 NM_005672 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 263.167-2 chr1 235994791 235995115 + 1 NA intron (NM_002508, intron 12 of 19) intron (NM_002508, intron 12 of 19) 70137 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 188.833-22 chr2 178667336 178667613 + 1 NA exon (NM_001267550, exon 161 of 363) exon (NM_001267550, exon 161 of 363) -109452 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 177.667-10 chr14 20802886 20803128 + 1 NA promoter-TSS (NM_002933) promoter-TSS (NM_002933) -163 NM_198234 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 211.167-12 chr2 182068617 182069098 + 1 NA intron (NM_001261425, intron 4 of 5) intron (NM_001261425, intron 4 of 5) 83004 NM_001261424 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 265.5-26 chr5 173057159 173057556 + 1 NA intron (NM_001168393, intron 1 of 3) CpG 1005 NM_153607 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 203.667-17 chr15 69385050 69385277 + 1 NA intron (NM_001104554, intron 5 of 8) MER63B|DNA|hAT-Blackjack -29186 NR_160296 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 188.333-16 chr15 57034172 57034556 + 1 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 114919 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 166.333-28 chr19 31949318 31949510 + 1 NA Intergenic Intergenic -76448 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 188.667-27 chr2 203928630 203928964 + 1 NA Intergenic L1ME4a|LINE|L1 -7951 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 216.667-44 chr7 32223668 32224061 + 1 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 75464 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 168.167-13 chr18 3946046 3946229 + 1 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -16216 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 344.5-5 chr12 29490004 29490414 + 1 NA intron (NM_001353179, intron 5 of 25) AluJo|SINE|Alu 9484 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 198.5-14 chr14 32915959 32916339 + 1 NA Intergenic Intergenic -22730 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 203.833 chr1 26743677 26744108 + 1 NA intron (NM_139135, intron 4 of 19) intron (NM_139135, intron 4 of 19) -44071 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 177.5-27 chr18 44501690 44501985 + 1 NA intron (NR_110792, intron 2 of 4) L2c|LINE|L2 29860 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 185.667-3 chr1 107592232 107592602 + 1 NA intron (NM_006113, intron 25 of 26) L1MC4|LINE|L1 96082 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 225.833-8 chr13 107747687 107748111 + 1 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 87559 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 184.833-24 chr4 97626899 97627097 + 1 NA intron (NM_174952, intron 10 of 10) L1M5|LINE|L1 260072 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 255.667-4 chr12 40017658 40018047 + 1 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 88229 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 207.833-31 chr8 106317829 106318070 + 1 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 47771 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 194.5-38 chr4 129328940 129329138 + 1 NA Intergenic MIRb|SINE|MIR 232887 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 253.5-36 chr9 38723357 38723787 + 1 NA Intergenic Intergenic 102484 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 186.833-23 chr8 56904638 56905208 + 1 NA Intergenic Intergenic 88944 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 202.333-18 chr17 65864648 65865014 + 1 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -38288 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 177.833-6 chr10 99647344 99647605 + 1 NA Intergenic L1PB4|LINE|L1 -12035 NM_020354 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 261.833-16 chr7 108145884 108146349 + 1 NA Intergenic Intergenic -15755 NM_001318047 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 289.667-19 chr3 94498346 94498741 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR 435482 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 232.333-17 chr2 81286213 81286516 + 1 NA Intergenic L1ME3Cz|LINE|L1 180582 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 236.833-22 chr6 49624658 49625213 + 1 NA intron (NM_000324, intron 1 of 9) intron (NM_000324, intron 1 of 9) 11939 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 222.833-2 chr1 63735318 63735558 + 1 NA Intergenic L1MA3|LINE|L1 -38579 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 615.167 chr17 41689313 41690284 + 1 NA exon (NM_005801, exon 2 of 4) exon (NM_005801, exon 2 of 4) 913 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 209.333-40 chr8 33572117 33572574 + 1 NA Intergenic Intergenic -5217 NM_024787 79845 Hs.151237 NM_024787 ENSG00000133874 RNF122 - ring finger protein 122 protein-coding 234.5-17 chr17 69706262 69706543 + 1 NA intron (NR_109972, intron 3 of 4) HERV16-int|LTR|ERVL 112415 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 184.5-45 chr5 150036634 150036984 + 1 NA exon (NM_001366501, exon 11 of 19) exon (NM_001366501, exon 11 of 19) 36070 NM_014983 22993 Hs.719189 NM_014983 ENSG00000113716 HMGXB3 HMGX3|SMF HMG-box containing 3 protein-coding 204.333-24 chr2 209335269 209335599 + 1 NA Intergenic Intergenic -88613 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 188.667-13 chr13 113891178 113891521 + 1 NA Intergenic MER4D|LTR|ERV1 -3754 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 228.667-46 chr7 70600806 70601197 + 1 NA intron (NM_015570, intron 5 of 18) L1MB7|LINE|L1 -531143 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 197.333-12 chr18 79993221 79993535 + 1 NA intron (NM_001305564, intron 1 of 2) PRIMA4-int|LTR|ERV1 -4815 NM_001303471 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 185.333-59 chr9 82959516 82959863 + 1 NA Intergenic Intergenic 103453 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 258.667-26 chr6 117221084 117221513 + 1 NA Intergenic Intergenic -44260 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 285.333-3 chr10 63767398 63767941 + 1 NA Intergenic Intergenic -245779 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 196.5-24 chr20 56643122 56643427 + 1 NA Intergenic Intergenic 13968 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 206.833-14 chr3 17650173 17650607 + 1 NA intron (NM_001349076, intron 1 of 22) intron (NM_001349076, intron 1 of 22) 49630 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 213.5-33 chr9 29856011 29856269 + 1 NA Intergenic Intergenic 552314 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 164.167-24 chr2 119655969 119656248 + 1 NA intron (NR_073132, intron 24 of 24) MIRb|SINE|MIR -23059 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 281.667-21 chr4 83269829 83270249 + 1 NA intron (NM_015697, intron 4 of 6) intron (NM_015697, intron 4 of 6) 14756 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 304.833-11 chr8 108120494 108121087 + 1 NA Intergenic Intergenic -37170 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 165.667-34 chr3 6807266 6807449 + 1 NA Intergenic L2a|LINE|L2 -1908 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 216.5-45 chr8 104780275 104780583 + 1 NA Intergenic Intergenic -191405 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 311.333-24 chr8 114481867 114482407 + 1 NA Intergenic Intergenic -1045198 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 222.333-11 chr15 84570916 84571201 + 1 NA promoter-TSS (NR_003661) promoter-TSS (NR_003661) -76 NR_038273 100506874 Hs.150824 NR_038273 LINC00933 - long intergenic non-protein coding RNA 933 ncRNA 209.333-23 chr20 16804087 16804625 + 1 NA Intergenic AluJr|SINE|Alu 56003 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 287.5-15 chr3 125108642 125109150 + 1 NA intron (NM_001195483, intron 8 of 12) (AC)n|Simple_repeat|Simple_repeat 42656 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 244.333-2 chr1 99806894 99807314 + 1 NA Intergenic MER47B|DNA|TcMar-Tigger -40469 NM_001361041 391059 Hs.454779 NM_001013660 ENSG00000156869 FRRS1 SDFR2|SDR2 ferric chelate reductase 1 protein-coding 170.333-54 chr8 75450221 75450562 + 1 NA intron (NM_001330561, intron 1 of 11) L1MA8|LINE|L1 42742 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 164.333 chr1 36420976 36421407 + 1 NA intron (NM_001330493, intron 8 of 10) intron (NM_001330493, intron 8 of 10) -2613 NR_145725 109616970 NR_145725 ENSG00000201448 SNORA63C - small nucleolar RNA, H/ACA box 63C snoRNA 358.5-10 chr20 8549293 8549853 + 1 NA intron (NM_182734, intron 3 of 32) THE1C|LTR|ERVL-MaLR -281612 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 209.5-38 chr9 124692796 124693059 + 1 NA promoter-TSS (NR_029782) promoter-TSS (NR_029782) 485 NR_029611 406954 NR_029611 ENSG00000207595 MIR181A2 MIRN181A|MIRN181A2|hsa-mir-181a-2|mir-181a-2 microRNA 181a-2 ncRNA 181.333-12 chr17 59085462 59085671 + 1 NA intron (NR_148346, intron 4 of 23) L1MB2|LINE|L1 21314 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 182.667-27 chr2 113979423 113979652 + 1 NA promoter-TSS (NR_034128) promoter-TSS (NR_034128) -32 NR_148509 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 215.333-41 chr6 128781070 128781523 + 1 NA Intergenic L2|LINE|L2 -101842 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 381.5-10 chr8 58708379 58708781 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -48727 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 171.333-24 chr19 49225085 49225426 + 1 NA Intergenic AluSc|SINE|Alu 67463 NM_017636 54795 Hs.467101 NM_017636 ENSG00000130529 TRPM4 LTrpC4|PFHB1B|TRPM4B|hTRPM4 transient receptor potential cation channel subfamily M member 4 protein-coding 280.333-15 chr17 45131282 45131666 + 1 NA intron (NM_133373, intron 1 of 14) MIRb|SINE|MIR 1041 NM_133373 113026 Hs.380094 NM_133373 ENSG00000161714 PLCD3 PLC-delta-3 phospholipase C delta 3 protein-coding 219.333-5 chr1 208240247 208240847 + 1 NA intron (NM_025179, intron 1 of 31) intron (NM_025179, intron 1 of 31) 3837 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 369.667-2 chr1 210943299 210943782 + 1 NA intron (NM_002238, intron 6 of 10) AluYj4|SINE|Alu 189834 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 228.667-54 chr9 114338780 114339220 + 1 NA intron (NM_001317950, intron 21 of 21) intron (NM_001317950, intron 21 of 21) 9211 NM_000608 5005 Hs.719954 NM_000608 ENSG00000228278 ORM2 AGP-B|AGP-B'|AGP2 orosomucoid 2 protein-coding 187.5-41 chr8 17007791 17008021 + 1 NA Intergenic L1PA15|LINE|L1 -5561 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 246.667-8 chr16 70638358 70638739 + 1 NA intron (NM_001172772, intron 1 of 6) intron (NM_001172772, intron 1 of 6) 14556 NM_001172772 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 184.5-18 chr14 103104858 103105075 + 1 NA intron (NM_001077594, intron 5 of 10) CpG-7692 4822 NM_001077594 91828 Hs.37712 NM_001077594 ENSG00000205436 EXOC3L4 C14orf73 exocyst complex component 3 like 4 protein-coding 181.333-33 chr4 165555551 165555764 + 1 NA Intergenic L1MA7|LINE|L1 -128982 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 205.667-44 chr8 120602151 120602573 + 1 NA intron (NM_021021, intron 3 of 6) MLT2D|LTR|ERVL 156943 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 166.667-28 chr2 111092636 111092899 + 1 NA intron (NM_001371254, intron 17 of 18) intron (NM_001371254, intron 17 of 18) 22821 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 164.5-24 chr2 28275884 28276160 + 1 NA intron (NM_199193, intron 11 of 13) (A)n|Simple_repeat|Simple_repeat 34437 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 188.667-45 chr7 35563184 35563444 + 1 NA Intergenic MIR|SINE|MIR 131821 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 171.667-29 chr2 128469170 128469362 + 1 NA Intergenic Intergenic -150398 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 172.667-42 chr4 106056054 106056450 + 1 NA intron (NM_001290768, intron 26 of 26) L2c|LINE|L2 -33774 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 262.833-11 chr4 52590115 52590392 + 1 NA TTS (NM_022832) TTS (NM_022832) 66286 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 195.667-32 chr4 130037163 130037535 + 1 NA Intergenic L1MA6|LINE|L1 265730 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 220.167-8 chr12 12350330 12350747 + 1 NA promoter-TSS (NM_018050) promoter-TSS (NM_018050) -296 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 409.667-8 chr8 27322300 27322910 + 1 NA intron (NM_004103, intron 1 of 31) MIRc|SINE|MIR 203 NM_004103 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 185.333-54 chr8 109108246 109108564 + 1 NA intron (NM_003301, intron 2 of 2) intron (NM_003301, intron 2 of 2) 21777 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 227.667 chr1 8822993 8823387 + 1 NA Intergenic Intergenic -5550 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 190.167-5 chr17 2108097 2108577 + 1 NA intron (NM_001256827, intron 6 of 11) AluSz|SINE|Alu -19576 NM_001282326 23293 Hs.448342 NM_017575 ENSG00000070366 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 174.833-23 chr7 40910456 40910817 + 1 NA Intergenic Intergenic 69303 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 178.333-34 chr6 150270803 150271109 + 1 NA Intergenic Intergenic -98056 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 180.333-26 chr2 99863332 99863688 + 1 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 242073 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 268.667-30 chr9 131527436 131528003 + 1 NA intron (NR_134666, intron 5 of 7) AluJr|SINE|Alu 3544 NM_031432 83549 Hs.9597 NM_031432 ENSG00000130717 UCK1 URK1 uridine-cytidine kinase 1 protein-coding 273.5-20 chr8 99453195 99453566 + 1 NA intron (NM_017890, intron 23 of 61) intron (NM_017890, intron 23 of 61) 83350 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 219.833-6 chr12 124764314 124765081 + 1 NA Intergenic Intergenic 74974 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 167.167-23 chr3 173626437 173626650 + 1 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 42109 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 234.333-40 chr9 82859378 82859843 + 1 NA Intergenic L1ME2|LINE|L1 203532 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 288.167-2 chr1 162855984 162856527 + 1 NA intron (NM_178550, intron 2 of 3) intron (NM_178550, intron 2 of 3) 12560 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 227.5-14 chr14 26431364 26431680 + 1 NA Intergenic (AATAGA)n|Simple_repeat|Simple_repeat 121908 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 300.167-9 chr21 17888987 17889506 + 1 NA Intergenic MLT2B4|LTR|ERVL -3638 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 394.5-5 chr20 56983553 56983996 + 1 NA Intergenic MLT1F|LTR|ERVL-MaLR -229922 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 262.667-35 chr9 72465866 72466185 + 1 NA Intergenic MIR|SINE|MIR -55776 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 236.333-22 chr3 196659531 196659993 + 1 NA exon (NM_198565, exon 3 of 3) exon (NM_198565, exon 3 of 3) 20068 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 180.833-16 chr4 39196196 39196720 + 1 NA intron (NM_025132, intron 5 of 36) L2|LINE|L2 13929 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 208.333-2 chr1 108989360 108989617 + 1 NA intron (NM_014969, intron 9 of 14) intron (NM_014969, intron 9 of 14) -25989 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 198.333-6 chr10 62527016 62527348 + 1 NA intron (NM_199452, intron 1 of 6) L1PB1|LINE|L1 6734 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 226.333-26 chr6 144932539 144933051 + 1 NA Intergenic Intergenic 527140 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 214.333-39 chr6 7384527 7384958 + 1 NA intron (NM_001170693, intron 3 of 12) AluJb|SINE|Alu 5000 NM_001170693 285782 Hs.721486 NM_175745 ENSG00000164304 CAGE1 CT3|CT95|CTAG3|bA69L16.7 cancer antigen 1 protein-coding 263.5-10 chr16 72568475 72568858 + 1 NA intron (NR_159370, intron 2 of 5) intron (NR_159370, intron 2 of 5) 96304 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 442.833-5 chr8 123220574 123221214 + 1 NA intron (NM_032847, intron 5 of 5) intron (NM_032847, intron 5 of 5) -5031 NR_039808 100616260 NR_039808 ENSG00000266324 MIR4663 - microRNA 4663 ncRNA 202.667-23 chr2 226427795 226428080 + 1 NA Intergenic AluJb|SINE|Alu 230856 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 244.333-22 chr4 33391271 33391889 + 1 NA Intergenic Intergenic 648313 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 193.5-33 chr3 128133762 128133988 + 1 NA intron (NM_001319086, intron 1 of 9) L1MA3|LINE|L1 -10063 NM_003707 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 269.667-9 chr15 79061676 79062166 + 1 NA intron (NM_001145648, intron 2 of 26) L1ME2|LINE|L1 28859 NM_001145648 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 232.333-2 chr10 75547798 75548114 + 1 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -4502 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 217.333-11 chr11 109609308 109609631 + 1 NA Intergenic Intergenic 187279 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 190.5-14 chr14 52644707 52645024 + 1 NA intron (NM_014584, intron 15 of 15) MamRTE1|LINE|RTE-BovB 50693 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 253.5-29 chr6 52141486 52141761 + 1 NA Intergenic Intergenic -2726 NR_029713 406989 NR_029713 ENSG00000207604 MIR206 MIRN206|miRNA206|mir-206 microRNA 206 ncRNA 185.667-41 chr6 129082828 129083119 + 1 NA intron (NM_000426, intron 3 of 64) intron (NM_000426, intron 3 of 64) 199832 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 200.167-28 chr8 17596496 17596747 + 1 NA intron (NM_006207, intron 3 of 6) intron (NM_006207, intron 3 of 6) 20188 NM_006207 5157 Hs.458573 NM_006207 ENSG00000104213 PDGFRL PDGRL|PRLTS platelet derived growth factor receptor like protein-coding 258.5-24 chr4 184331446 184331804 + 1 NA Intergenic LTR82B|LTR|ERVL 22352 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LINC02363 - long intergenic non-protein coding RNA 2363 ncRNA 208.833-6 chr12 58434773 58435255 + 1 NA Intergenic L1MB5|LINE|L1 -156688 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 170.333-55 chr8 119359760 119359956 + 1 NA Intergenic Intergenic 34687 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 165.667-33 chr21 24982083 24982572 + 1 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 141777 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 169.667-30 chr18 75537745 75538045 + 1 NA Intergenic L1ME1|LINE|L1 -110192 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 192.833-24 chr20 3951812 3952025 + 1 NA intron (NM_001134337, intron 2 of 5) L1MC4a|LINE|L1 -34355 NR_031722 100302282 NR_031722 ENSG00000283320 MIR103B2 MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as microRNA 103b-2 ncRNA 287.5-22 chr7 69303228 69303860 + 1 NA Intergenic AluSx1|SINE|Alu 294080 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 176.833-41 chr9 93134742 93135016 + 1 NA promoter-TSS (NM_004148) promoter-TSS (NM_004148) -628 NM_004148 4814 Hs.494457 NM_004148 ENSG00000131669 NINJ1 NIN1|NINJURIN ninjurin 1 protein-coding 427.167-7 chr2 42579272 42580253 + 1 NA intron (NM_001330443, intron 3 of 16) AluJr|SINE|Alu 11130 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 172.667-18 chr14 76576283 76576623 + 1 NA Intergenic Intergenic -185015 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 216.833-4 chr1 162585728 162586059 + 1 NA intron (NM_003115, intron 5 of 9) intron (NM_003115, intron 5 of 9) 23994 NM_001324113 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 290.5-24 chr6 65195925 65196332 + 1 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -105290 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 339.167-13 chr5 173010204 173010681 + 1 NA intron (NM_003945, intron 2 of 3) MIRb|SINE|MIR -10284 NR_002988 677841 Hs.692720 NR_002988 ENSG00000212402 SNORA74B U19-2 small nucleolar RNA, H/ACA box 74B snoRNA 173.167-10 chr12 15172103 15172289 + 1 NA intron (NM_032918, intron 2 of 4) L1MB8|LINE|L1 20273 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 203.667-14 chr12 121136245 121136565 + 1 NA intron (NR_033953, intron 1 of 10) AluJb|SINE|Alu 3529 NR_033953 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 256.667-27 chr8 47226054 47226460 + 1 NA Intergenic L1MB3|LINE|L1 -34621 NR_104581 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 211.333-53 chr8 143943713 143944106 + 1 NA promoter-TSS (NM_201382) promoter-TSS (NM_201382) 76 NM_201382 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 172.667-14 chr12 8933433 8933710 + 1 NA intron (NM_004426, intron 8 of 14) intron (NM_004426, intron 8 of 14) 16074 NM_002355 4074 Hs.134084 NM_002355 ENSG00000003056 M6PR CD-M6PR|CD-MPR|MPR 46|MPR-46|MPR46|SMPR mannose-6-phosphate receptor, cation dependent protein-coding 173.333-4 chr12 24001626 24001946 + 1 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -50754 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 228.667-32 chr4 74174294 74174617 + 1 NA intron (NM_001351310, intron 3 of 8) intron (NM_001351310, intron 3 of 8) 16337 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 275.333-6 chr14 64719862 64720384 + 1 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 15699 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 313.667-7 chr17 59666376 59666724 + 1 NA exon (NM_004859, exon 12 of 32) exon (NM_004859, exon 12 of 32) 41048 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 348.5-7 chr11 8263945 8264410 + 1 NA promoter-TSS (NR_073006) promoter-TSS (NR_073006) -299 NM_002315 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 176.333-31 chr6 56510545 56510998 + 1 NA intron (NM_001144770, intron 65 of 94) intron (NM_001144770, intron 65 of 94) -116643 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 165.167-20 chr2 103082292 103082773 + 1 NA Intergenic L1MCa|LINE|L1 -98103 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 246.667-10 chr18 9666476 9666752 + 1 NA Intergenic L1MC5a|LINE|L1 -41687 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 215.333-2 chr1 119511909 119512258 + 1 NA intron (NM_001328615, intron 3 of 3) intron (NM_001328615, intron 3 of 3) 4873 NM_000862 3283 Hs.364941 NM_000862 ENSG00000203857 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 286.833-10 chr6 52710637 52710986 + 1 NA Intergenic L1MC5a|LINE|L1 34348 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 226.5-29 chr4 72504346 72504842 + 1 NA intron (NM_014243, intron 3 of 21) L1PA15-16|LINE|L1 64627 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 186.5-2 chr10 61314231 61314674 + 1 NA Intergenic Intergenic -138187 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 167.5-6 chr10 21526740 21526907 + 1 NA Intergenic CpG -1141 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 312.667-13 chr3 129942172 129942656 + 1 NA Intergenic Intergenic -32306 NM_007117 7200 Hs.182231 NM_007117 ENSG00000170893 TRH Pro-TRH|TRF thyrotropin releasing hormone protein-coding 265.667-3 chr1 114387265 114387640 + 1 NA Intergenic AluSx1|SINE|Alu 123751 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 181.667-22 chr2 65385575 65385811 + 1 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -18915 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 320.833-7 chr5 94737550 94738279 + 1 NA intron (NM_001297777, intron 16 of 19) AluSx|SINE|Alu 119245 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 248.5-8 chr10 74566737 74567227 + 1 NA intron (NM_001369123, intron 7 of 9) MIR3|SINE|MIR -37658 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 294.5-8 chr14 56686694 56687299 + 1 NA Intergenic Intergenic 107198 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 237.667-27 chr3 70464941 70465273 + 1 NA Intergenic Intergenic -152469 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 211.333-20 chr17 74146392 74146833 + 1 NA Intergenic L1MC2|LINE|L1 -57066 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 274.667-24 chr7 116776332 116776719 + 1 NA intron (NM_000245, intron 15 of 20) intron (NM_000245, intron 15 of 20) -86062 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 236.833 chr1 162186632 162187107 + 1 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) 29762 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 171.667-54 chr7 25125566 25125883 + 1 NA promoter-TSS (NM_018947) promoter-TSS (NM_018947) -363 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 235.667 chr1 116778007 116778253 + 1 NA Intergenic Tigger17a|DNA|TcMar-Tigger 23700 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 243.5-3 chr12 49601092 49601574 + 1 NA intron (NR_027450, intron 3 of 6) intron (NR_027450, intron 3 of 6) 4306 NM_032130 84070 Hs.524406 NM_032130 ENSG00000135436 FAM186B C12orf25 family with sequence similarity 186 member B protein-coding 341.167-4 chr10 72085649 72086255 + 1 NA TTS (NM_001134434) TTS (NM_001134434) 2599 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 284.333-10 chr15 100764881 100765600 + 1 NA Intergenic Intergenic -84512 NR_160702 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 170.333-22 chr15 79483205 79483513 + 1 NA Intergenic Intergenic 50843 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 173.5-55 chr9 130825441 130825753 + 1 NA intron (NM_007313, intron 1 of 10) intron (NM_007313, intron 1 of 10) -9657 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 186.333 chr1 25214648 25214876 + 1 NA Intergenic Intergenic 17740 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 231.167-22 chr3 103440669 103441092 + 1 NA Intergenic Intergenic 83236 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 240.167-12 chr2 45171612 45172047 + 1 NA Intergenic Intergenic 83112 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 321.333-3 chr10 73491214 73491776 + 1 NA intron (NM_001289969, intron 1 of 12) intron (NM_001289969, intron 1 of 12) -4257 NR_132103 101929145 Hs.434502 NR_132103 ENSG00000221817 PPP3CB-AS1 USP54-AS1 PPP3CB antisense RNA 1 (head to head) ncRNA 228.333-11 chr11 116583375 116583694 + 1 NA Intergenic Intergenic -55888 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 204.333-44 chr7 98779804 98780144 + 1 NA Intergenic Intergenic 90040 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 252.333-7 chr15 67243673 67244200 + 1 NA intron (NM_001271885, intron 1 of 9) intron (NM_001271885, intron 1 of 9) 10725 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 299.333 chr1 243932737 243933481 + 1 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 15707 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 198.333-44 chr8 112627738 112627970 + 1 NA intron (NM_001363185, intron 20 of 66) L2b|LINE|L2 -15639 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 187.5-29 chr4 114615502 114615862 + 1 NA intron (NM_001322114, intron 1 of 5) MLT1J|LTR|ERVL-MaLR -6685 NM_003360 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 233.667-30 chr6 61782469 61782952 + 1 NA intron (NR_146874, intron 6 of 13) (TA)n|Simple_repeat|Simple_repeat 208580 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 205.833-5 chr10 99202451 99202819 + 1 NA intron (NM_021828, intron 2 of 11) MIRb|SINE|MIR 33240 NM_001166246 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 180.167 chr1 111154263 111154660 + 1 NA intron (NM_001007794, intron 2 of 8) L1MA5|LINE|L1 14238 NM_006090 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 216.5-23 chr2 52875860 52876165 + 1 NA Intergenic Intergenic -173397 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 212.5-13 chr13 78219156 78219486 + 1 NA intron (NR_047001, intron 2 of 5) intron (NR_047001, intron 2 of 5) 164466 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 274.167-11 chr4 37562509 37563191 + 1 NA intron (NM_001104629, intron 2 of 3) L2c|LINE|L2 -21383 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 215.167-26 chr5 19147225 19147440 + 1 NA Intergenic L1M5|LINE|L1 738940 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 272.333-10 chr4 109498571 109499231 + 1 NA intron (NM_001300813, intron 7 of 24) intron (NM_001300813, intron 7 of 24) 10203 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 202.833-19 chr3 81140941 81141232 + 1 NA Intergenic Intergenic 147218 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 304.667-8 chr17 82352209 82352628 + 1 NA Intergenic Intergenic -6829 NM_207459 400629 Hs.231897 NM_207459 ENSG00000182459 TEX19 - testis expressed 19 protein-coding 202.667-4 chr10 66892500 66892833 + 1 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -33370 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 346.833-11 chr8 142100733 142101498 + 1 NA Intergenic Intergenic -75224 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 175.333-23 chr17 81961143 81961354 + 1 NA promoter-TSS (NM_178493) promoter-TSS (NM_178493) -61 NM_178493 147111 Hs.106137 NM_178493 ENSG00000185269 NOTUM hNOTUM notum, palmitoleoyl-protein carboxylesterase protein-coding 200.5-31 chr21 16331649 16331953 + 1 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -47033 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 207.167-13 chr21 29074068 29074516 + 1 NA promoter-TSS (NM_006585) promoter-TSS (NM_006585) -495 NM_001282907 10694 Hs.125113 NM_006585 ENSG00000156261 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1 subunit 8 protein-coding 397.333-5 chr9 101533443 101534124 + 1 NA promoter-TSS (NM_019592) promoter-TSS (NM_019592) -70 NM_019592 56254 Hs.729085 NM_019592 ENSG00000155827 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20 protein-coding 167.5-4 chr1 197440524 197441083 + 1 NA intron (NM_001193640, intron 8 of 9) intron (NM_001193640, intron 8 of 9) 172551 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 265.833-19 chr9 75980068 75980555 + 1 NA intron (NR_120409, intron 2 of 19) intron (NR_120409, intron 2 of 19) 89638 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 213.333-43 chr7 76019620 76019884 + 1 NA intron (NM_016086, intron 4 of 8) intron (NM_016086, intron 4 of 8) 10772 NR_134487 51657 Hs.11615 NM_016086 ENSG00000127952 STYXL1 DUSP24|MK-STYX|MKSTYX serine/threonine/tyrosine interacting like 1 protein-coding 175.5-47 chr6 16514244 16514469 + 1 NA intron (NM_000332, intron 6 of 8) intron (NM_000332, intron 6 of 8) 245828 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 184.5-43 chr5 123708792 123709074 + 1 NA Intergenic MER63A|DNA|hAT-Blackjack 163516 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 227.667-24 chr2 100912507 100913036 + 1 NA intron (NM_002518, intron 2 of 20) MLT1G1|LTR|ERVL-MaLR 64390 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 273.333-11 chr3 94871204 94871732 + 1 NA Intergenic Intergenic -66795 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 245.833 chr1 43390197 43390546 + 1 NA promoter-TSS (NM_201542) promoter-TSS (NM_201542) 472 NM_015284 23334 Hs.643560 NM_015284 ENSG00000198198 SZT2 C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B SZT2 subunit of KICSTOR complex protein-coding 164.167-19 chr16 51293998 51294387 + 1 NA intron (NR_039672, intron 6 of 6) Tigger1|DNA|TcMar-Tigger -142920 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 238.5-24 chr3 49429005 49429305 + 1 NA exon (NM_032316, exon 1 of 6) exon (NM_032316, exon 1 of 6) 169 NM_032316 84276 Hs.191460 NM_032316 ENSG00000145029 NICN1 - nicolin 1 protein-coding 194.5-9 chr10 116522427 116522654 + 1 NA Intergenic Intergenic -23391 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 227.833-22 chr9 42388230 42388519 + 1 NA Intergenic MIRb|SINE|MIR 180975 NR_126050 103908605 Hs.721139 NR_126050 LOC103908605 - uncharacterized LOC103908605 ncRNA 295.5-11 chr3 104221829 104222216 + 1 NA Intergenic L1PA7|LINE|L1 -697906 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 292.167 chr1 23366331 23366908 + 1 NA intron (NM_001370652, intron 2 of 2) intron (NM_001370652, intron 2 of 2) 1767 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 259.333-2 chr1 68750972 68751439 + 1 NA Intergenic MER103C|DNA|hAT-Charlie -254123 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 169.667-49 chr5 60769713 60770049 + 1 NA intron (NM_001297618, intron 4 of 8) AluJb|SINE|Alu -69715 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 183.5-15 chr15 101017935 101018341 + 1 NA intron (NM_024652, intron 12 of 33) L1ME3G|LINE|L1 98781 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 259.5-25 chr4 84918910 84919576 + 1 NA intron (NM_014991, intron 2 of 67) L1MC4a|LINE|L1 -46373 NR_152773 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 337.667-9 chr19 31213470 31213980 + 1 NA intron (NR_138036, intron 2 of 4) L1MC1|LINE|L1 46215 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 269.667-19 chr3 103843463 103844030 + 1 NA Intergenic L1M4|LINE|L1 -319630 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 205.5-40 chr8 53000074 53000302 + 1 NA Intergenic MER34A|LTR|ERV1 60280 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 204.5-28 chr4 120103120 120103436 + 1 NA Intergenic L1M5|LINE|L1 -36430 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 179.5-16 chr14 21297455 21297699 + 1 NA intron (NM_020366, intron 2 of 23) intron (NM_020366, intron 2 of 23) 9600 NM_020366 57096 Hs.126035 NM_020366 ENSG00000092200 RPGRIP1 CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d RPGR interacting protein 1 protein-coding 192.667-19 chr2 114594521 114594788 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 133077 NM_001321911 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 246.333-34 chr5 162248269 162248655 + 1 NA Intergenic Intergenic 180820 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 194.5-37 chr4 47927494 47927940 + 1 NA intron (NR_125879, intron 1 of 2) intron (NR_125879, intron 1 of 2) -13050 NM_001278623 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 210.333-28 chr5 54384533 54384807 + 1 NA intron (NR_126379, intron 1 of 4) intron (NR_126379, intron 1 of 4) 63726 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 166.333-39 chr3 30944868 30945122 + 1 NA Intergenic LTR41|LTR|ERVL -50334 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 348.667-14 chr6 134826765 134827366 + 1 NA Intergenic Intergenic 123036 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 223.833-22 chr8 86047833 86048211 + 1 NA 3' UTR (NM_033126, exon 3 of 3) 3' UTR (NM_033126, exon 3 of 3) 21646 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 264.333-10 chr16 12955114 12955503 + 1 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 53710 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 196.833-11 chr16 714734 715043 + 1 NA promoter-TSS (NM_024042) promoter-TSS (NM_024042) -230 NM_024042 79006 Hs.533772 NM_024042 ENSG00000103260 METRN C16orf23|c380A1.2 meteorin, glial cell differentiation regulator protein-coding 190.333-38 chr7 119255245 119255621 + 1 NA Intergenic Intergenic 651942 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 178.667-33 chr4 54220176 54220593 + 1 NA Intergenic Intergenic -8909 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 283.333-21 chr9 26723693 26724215 + 1 NA Intergenic LTR50|LTR|ERVL 168848 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 221.833-6 chr12 54017535 54018158 + 1 NA intron (NM_014620, intron 1 of 3) intron (NM_014620, intron 1 of 3) 958 NM_153693 3223 Hs.549040 NM_004503 ENSG00000197757 HOXC6 CP25|HHO.C8|HOX3|HOX3C homeobox C6 protein-coding 183.333-61 chr7 87799146 87799387 + 1 NA intron (NM_001134406, intron 8 of 9) L2a|LINE|L2 77094 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 219.333-25 chr2 82720627 82720926 + 1 NA Intergenic AluJr|SINE|Alu -136027 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 203.5-3 chr1 47704168 47704510 + 1 NA Intergenic MIRb|SINE|MIR -267022 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 189.333-22 chr2 218688284 218688491 + 1 NA intron (NM_001369423, intron 11 of 26) intron (NM_001369423, intron 11 of 26) 16069 NM_001369423 27148 Hs.471404 NM_015690 ENSG00000163482 STK36 FU serine/threonine kinase 36 protein-coding 168.333-59 chr7 28051534 28051874 + 1 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -128753 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 290.167-12 chr5 12055945 12056506 + 1 NA Intergenic Intergenic -151779 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 329.667-14 chr9 115590473 115590952 + 1 NA Intergenic Intergenic 153527 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 218.833-13 chr2 36507503 36507781 + 1 NA intron (NM_016441, intron 8 of 16) intron (NM_016441, intron 8 of 16) 90526 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 371.167-5 chr2 70143103 70143819 + 1 NA Intergenic Intergenic -18145 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 284.5-7 chr12 63518789 63519156 + 1 NA Intergenic L1MC1|LINE|L1 149521 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 330.5-11 chr4 113299808 113300450 + 1 NA intron (NM_001354275, intron 23 of 43) L2c|LINE|L2 7290 NM_001354282 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 190.333-31 chr4 74615226 74615579 + 1 NA Intergenic Intergenic 170266 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 452.667-3 chr2 240559754 240560569 + 1 NA 5' UTR (NM_001370465, exon 1 of 2) 5' UTR (NM_001370465, exon 1 of 2) 107 NM_001370465 285193 Hs.369297 NM_001033575 ENSG00000188542 DUSP28 DUSP26|VHP dual specificity phosphatase 28 protein-coding 180.5-12 chr12 61674419 61674673 + 1 NA Intergenic Intergenic 518293 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 300.667 chr1 145823901 145824445 + 1 NA promoter-TSS (NM_001303456) promoter-TSS (NM_001303456) -27 NM_006468 10623 Hs.515768 NM_006468 ENSG00000186141 POLR3C RPC3|RPC62 RNA polymerase III subunit C protein-coding 203.333-24 chr15 85289823 85290213 + 1 NA Intergenic Intergenic 49667 NM_001310153 100133220 Hs.454625 NM_001310153 GOLGA6L3 - golgin A6 family like 3 protein-coding 294.333-3 chr11 36563601 36564111 + 1 NA Intergenic Intergenic -4157 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 192.5-48 chr8 41065809 41066206 + 1 NA Intergenic Intergenic -168181 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 185.5-35 chr5 151838976 151839253 + 1 NA intron (NM_000171, intron 7 of 8) L1MB7|LINE|L1 -66938 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 179.5-37 chr4 178396234 178396486 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -488424 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 196.667-2 chr1 37691658 37691960 + 1 NA promoter-TSS (NM_018101) promoter-TSS (NM_018101) 433 NM_001350765 54955 Hs.272673 NM_017850 ENSG00000116922 C1orf109 - chromosome 1 open reading frame 109 protein-coding 201.333-6 chr10 58150117 58150348 + 1 NA Intergenic Intergenic 117662 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 204.5-10 chr12 89524575 89524903 + 1 NA promoter-TSS (NM_003774) promoter-TSS (NM_003774) 57 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 198.333-46 chr8 125250449 125250780 + 1 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 158754 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 203.667-27 chr2 221260543 221260855 + 1 NA Intergenic Intergenic 311605 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 186.333-38 chr7 87873706 87874061 + 1 NA intron (NM_018843, intron 1 of 11) intron (NM_018843, intron 1 of 11) 2477 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 398.333-15 chr7 35533104 35533883 + 1 NA Intergenic Intergenic 161642 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 230.5-18 chr2 40670611 40670861 + 1 NA Intergenic Intergenic -158301 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 248.5-38 chr8 38571287 38571655 + 1 NA Intergenic Intergenic 29786 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 307.333-5 chr13 96487658 96488158 + 1 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 60679 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 254.833-10 chr18 59534773 59535184 + 1 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 162445 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 192.167-13 chr14 68774574 68774949 + 1 NA Intergenic Intergenic 19153 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 198.333-27 chr2 109583507 109583794 + 1 NA intron (NM_001321508, intron 1 of 5) L1PA16|LINE|L1 30017 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 215.667-6 chr10 96533161 96533583 + 1 NA intron (NM_020123, intron 9 of 14) intron (NM_020123, intron 9 of 14) -19446 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 170.5-31 chr3 150124536 150124853 + 1 NA intron (NR_136187, intron 1 of 2) intron (NR_136187, intron 1 of 2) 28251 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 322.5-23 chr5 75194902 75195310 + 1 NA intron (NM_001164443, intron 7 of 24) intron (NM_001164443, intron 7 of 24) 41772 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 272.5-3 chr10 122712888 122713224 + 1 NA Intergenic Intergenic -13210 NM_001010912 399814 Hs.363649 NM_001010912 ENSG00000183559 C10orf120 bA318C4.1 chromosome 10 open reading frame 120 protein-coding 170.5-6 chr10 16510258 16510655 + 1 NA intron (NM_030664, intron 5 of 5) intron (NM_030664, intron 5 of 5) 11423 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 184.333-12 chr13 113475250 113475448 + 1 NA intron (NM_001014283, intron 3 of 6) Tigger3c|DNA|TcMar-Tigger 15362 NM_001014283 55208 Hs.682987 NM_018185 ENSG00000150401 DCUN1D2 C13orf17 defective in cullin neddylation 1 domain containing 2 protein-coding 295.833-11 chr8 123519845 123520301 + 1 NA intron (NM_148177, intron 1 of 5) AluSx1|SINE|Alu 12070 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 356.333-11 chr6 21241193 21241569 + 1 NA Intergenic LTR90A|LTR|LTR 270511 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 251.833-3 chr12 72604224 72604644 + 1 NA intron (NM_013381, intron 12 of 18) intron (NM_013381, intron 12 of 18) -330925 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 250.667-46 chr9 88605017 88605425 + 1 NA Intergenic Intergenic 70043 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 224.833-7 chr11 91163988 91164576 + 1 NA Intergenic Intergenic -295080 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 222.333-36 chr9 72686661 72686886 + 1 NA intron (NM_138691, intron 5 of 23) MamRTE1|LINE|RTE-BovB 164972 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 219.5-30 chr7 13219790 13220140 + 1 NA Intergenic Intergenic 532332 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 246.667-14 chr20 23350185 23350716 + 1 NA promoter-TSS (NM_013248) promoter-TSS (NM_013248) -341 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 179.667-43 chr6 169090947 169091374 + 1 NA Intergenic THE1D-int|LTR|ERVL-MaLR 23374 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 177.5-46 chr8 58520595 58520875 + 1 NA Intergenic Intergenic -20572 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 220.833-17 chr3 120070046 120070267 + 1 NA intron (NM_002093, intron 1 of 11) AluSc|SINE|Alu 14492 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 350.333-8 chr6 18846502 18846959 + 1 NA Intergenic MER20|DNA|hAT-Charlie 274946 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 413.167-5 chr3 149143590 149144142 + 1 NA intron (NM_001308258, intron 3 of 15) intron (NM_001308258, intron 3 of 15) 14228 NM_001308258 84343 Hs.558314 NM_032383 ENSG00000163755 HPS3 BLOC2S1|SUTAL HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 protein-coding 240.667-5 chr10 20184031 20184332 + 1 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) 367749 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 242.833-3 chr10 54125234 54125739 + 1 NA intron (NM_001354411, intron 16 of 34) intron (NM_001354411, intron 16 of 34) -360744 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 356.667-8 chr5 82174359 82174806 + 1 NA intron (NM_031482, intron 4 of 7) MARNA|DNA|TcMar-Mariner 103772 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 211.5-6 chr10 12448878 12449214 + 1 NA intron (NM_001351032, intron 3 of 11) MIR|SINE|MIR 60064 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 191.5-17 chr15 63912924 63913302 + 1 NA intron (NM_014326, intron 9 of 11) L1MB7|LINE|L1 -15161 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 263.333-28 chr8 87760114 87760583 + 1 NA Intergenic Intergenic 113667 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 192.333-19 chr16 22195472 22195812 + 1 NA Intergenic Intergenic -10636 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K CaMKIII|HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 201.667-46 chr5 173400099 173400301 + 1 NA Intergenic Intergenic 52745 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 237.333-31 chr5 140825102 140825401 + 1 NA intron (NM_018908, intron 1 of 3) L1ME4b|LINE|L1 -2709 NM_031849 56142 Hs.199343 NM_018909 ENSG00000081842 PCDHA6 CNR2|CNRN2|CNRS2|CRNR2|PCDH-ALPHA6 protocadherin alpha 6 protein-coding 238.667-26 chr7 86002834 86003100 + 1 NA Intergenic L1M2|LINE|L1 581845 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 175.667-19 chr14 69643366 69643595 + 1 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 31884 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 173.167-18 chr2 66326824 66327284 + 1 NA Intergenic Intergenic 31274 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 272.667-12 chr12 111864517 111864842 + 1 NA intron (NM_003668, intron 1 of 13) intron (NM_003668, intron 1 of 13) -21674 NR_015404 51275 Hs.333120 NR_015404 ENSG00000234608 MAPKAPK5-AS1 C12orf47 MAPKAPK5 antisense RNA 1 ncRNA 234.333-25 chr3 84547369 84547810 + 1 NA Intergenic L1PA16|LINE|L1 321986 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 371.833-5 chr20 58132030 58132640 + 1 NA Intergenic Intergenic -18567 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 199.833-9 chr11 83184853 83185121 + 1 NA TTS (NR_133914) TTS (NR_133914) 2497 NR_133914 106736475 Hs.595343 NR_133914 PCF11-AS1 - PCF11 antisense RNA 1 ncRNA 232.667-2 chr1 58781141 58781548 + 1 NA 3' UTR (NM_002228, exon 1 of 1) 3' UTR (NM_002228, exon 1 of 1) 2703 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 223.333-35 chr5 17995893 17996324 + 1 NA Intergenic L1ME2|LINE|L1 188834 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 180.5-13 chr12 64280219 64280507 + 1 NA intron (NM_001099676, intron 6 of 10) intron (NM_001099676, intron 6 of 10) -58067 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 278.333-21 chr5 129882207 129882583 + 1 NA Intergenic MamGypLTR1a|LTR|Gypsy -22070 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 166.333-13 chr11 67202178 67202352 + 1 NA intron (NR_027473, intron 5 of 20) Tigger1|DNA|TcMar-Tigger -37749 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 207.333-38 chr5 95858119 95858355 + 1 NA intron (NR_026936, intron 2 of 2) intron (NR_026936, intron 2 of 2) 6005 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 278.333-27 chr9 118492608 118493015 + 1 NA Intergenic L1MA8|LINE|L1 -186860 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 165.833-32 chr5 107322949 107323117 + 1 NA Intergenic Intergenic -312019 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 340.333-2 chr1 73465629 73466139 + 1 NA Intergenic Intergenic 159714 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 223.833-15 chr4 35151146 35151740 + 1 NA Intergenic Intergenic -881696 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 263.667-26 chrX 48597793 48598135 + 1 NA non-coding (NR_029427, exon 1 of 9) non-coding (NR_029427, exon 1 of 9) 472 NM_001166426 64743 Hs.521973 NM_017883 ENSG00000101940 WDR13 MG21 WD repeat domain 13 protein-coding 264.5-19 chr3 172749017 172749395 + 1 NA Intergenic L2c|LINE|L2 -1479 NM_001258316 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 301.833 chr1 92712948 92713365 + 1 NA intron (NM_001350198, intron 2 of 19) MER33|DNA|hAT-Charlie 71952 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 186.333-29 chr3 23800865 23801145 + 1 NA Intergenic Intergenic -4950 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 239.667-43 chr9 113601249 113601816 + 1 NA Intergenic Intergenic 7403 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 168.833-26 chr9 131713864 131714082 + 1 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) -4131 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 183.5-9 chr12 131608975 131609167 + 1 NA Intergenic Intergenic 39050 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 229.333-32 chr6 15062484 15062824 + 1 NA Intergenic Intergenic -183415 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 214.333-21 chr2 222691684 222691911 + 1 NA intron (NM_058165, intron 3 of 5) intron (NM_058165, intron 3 of 5) 20139 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 187.833-12 chr17 58586680 58586950 + 1 NA intron (NM_031272, intron 17 of 31) MER6A|DNA|TcMar-Tigger -42487 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 217.167-29 chr7 42383373 42383703 + 1 NA Intergenic L1M5|LINE|L1 -146329 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 207.333-31 chr3 171049587 171049878 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -23012 NM_001278658 6514 Hs.167584 NM_000340 ENSG00000163581 SLC2A2 GLUT2 solute carrier family 2 member 2 protein-coding 191.833-13 chr2 48775306 48775636 + 1 NA intron (NM_001198593, intron 10 of 10) intron (NM_001198593, intron 10 of 10) -19747 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 191.167-25 chr7 36114494 36114700 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 19287 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 206.5-32 chr2 84373451 84373664 + 1 NA Intergenic Intergenic 82875 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 318.333-12 chr8 117714374 117714784 + 1 NA Intergenic Intergenic 193866 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 344.333-4 chr14 37174686 37175196 + 1 NA Intergenic Intergenic -2335 NM_001171170 89874 Hs.730857 NM_030631 ENSG00000183032 SLC25A21 ODC|ODC1 solute carrier family 25 member 21 protein-coding 185.333-50 chr8 61232794 61233029 + 1 NA Intergenic Intergenic -55059 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 225.333-8 chr10 77478455 77478771 + 1 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 127741 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 445.167-2 chr2 67702926 67703398 + 1 NA Intergenic Intergenic 122400 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 196.167-33 chr6 12599724 12600200 + 1 NA Intergenic MIRb|SINE|MIR -14558 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 250.333-4 chr1 155938360 155938696 + 1 NA Intergenic Intergenic -3161 NM_181885 339403 Hs.449914 NM_181885 ENSG00000173080 RXFP4 GPCR142|GPR100|RLN3R2|RXFPR4 relaxin family peptide/INSL5 receptor 4 protein-coding 171.667-31 chr2 203189478 203189706 + 1 NA intron (NM_001114132, intron 44 of 54) AluJr4|SINE|Alu -48849 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 164.333-17 chr14 66567906 66568273 + 1 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 60682 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 164.167-36 chr4 52620665 52621069 + 1 NA intron (NM_001286768, intron 5 of 9) L1ME3B|LINE|L1 35672 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 279.833 chr1 169464629 169464927 + 1 NA 3' UTR (NM_001319667, exon 5 of 5) 3' UTR (NM_001319667, exon 5 of 5) -4109 NM_001300968 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 212.667-25 chr2 121658258 121658515 + 1 NA intron (NR_037857, intron 2 of 3) L1MC5a|LINE|L1 8397 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 225.333-38 chr8 136773866 136774125 + 1 NA intron (NR_147196, intron 2 of 5) MLT1F2|LTR|ERVL-MaLR 243197 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 309.167-5 chr12 6723266 6723839 + 1 NA promoter-TSS (NM_001164093) promoter-TSS (NM_001164093) -494 NM_016319 50813 Hs.530823 NM_016319 ENSG00000111652 COPS7A CSN7|CSN7A|SGN7a COP9 signalosome subunit 7A protein-coding 272.833-4 chr12 13997000 13997383 + 1 NA Intergenic Tigger3a|DNA|TcMar-Tigger -16835 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 285.5-27 chr6 25920578 25920932 + 1 NA intron (NM_001286123, intron 5 of 11) intron (NM_001286123, intron 5 of 11) 5124 NM_001286125 10246 Hs.591802 NM_005835 ENSG00000112337 SLC17A2 NPT3 solute carrier family 17 member 2 protein-coding 194.167-2 chr1 95490252 95490480 + 1 NA Intergenic L2a|LINE|L2 15629 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 168.5-19 chr15 45393029 45393281 + 1 NA intron (NM_001321015, intron 3 of 11) MIR|SINE|MIR 9072 NM_001321015 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 194.833-14 chr16 52165050 52165663 + 1 NA Intergenic Intergenic 80075 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 235.333-11 chr2 182650696 182651033 + 1 NA Intergenic Intergenic -65393 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 225.333-25 chr3 81216332 81216717 + 1 NA Intergenic Intergenic 222656 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 167.167-12 chr11 62393565 62393957 + 1 NA TTS (NM_001083926) TTS (NM_001083926) -25272 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 254.667-22 chr3 101248732 101249035 + 1 NA intron (NM_016247, intron 11 of 18) LTR33|LTR|ERVL 71692 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 197.333-16 chr2 81095806 81096149 + 1 NA Intergenic Intergenic 370969 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 168.5-42 chr7 7311781 7312089 + 1 NA Intergenic L1ME1|LINE|L1 56781 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 179.333-47 chr7 112856049 112856374 + 1 NA intron (NM_152556, intron 3 of 4) intron (NM_152556, intron 3 of 4) -65788 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 197.333-10 chr17 66467309 66467507 + 1 NA intron (NM_002737, intron 2 of 16) MIR3|SINE|MIR -50554 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 213.333-27 chr4 84942608 84942930 + 1 NA intron (NM_014991, intron 1 of 67) L1MC4|LINE|L1 -22847 NR_152773 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 238.333-11 chr11 110257267 110257764 + 1 NA intron (NM_001260493, intron 7 of 15) intron (NM_001260493, intron 7 of 15) 39197 NM_001260496 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 184.667-7 chr11 28146285 28146529 + 1 NA intron (NM_001113528, intron 3 of 6) intron (NM_001113528, intron 3 of 6) 38019 NM_152636 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 285.833-8 chr2 79418179 79418464 + 1 NA Intergenic LTR8A|LTR|ERV1 82523 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 191.5-44 chr6 130072238 130072497 + 1 NA intron (NM_001007102, intron 12 of 21) MER2|DNA|TcMar-Tigger 52723 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 196.667-9 chr12 1513288 1513722 + 1 NA Intergenic L1MA4A|LINE|L1 13014 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 218.5-17 chr14 65127315 65127602 + 1 NA Intergenic AluJr|SINE|Alu -24763 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 216.333-26 chr21 29194213 29194563 + 1 NA intron (NR_027072, intron 1 of 1) LTR37A|LTR|ERV1 894 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 172.333-34 chr2 168077169 168077363 + 1 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) -136122 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 397.667-4 chr17 31067498 31067963 + 1 NA Intergenic Intergenic -8621 NR_146737 646030 NR_146737 LOC646030 - leucine rich repeat containing 37B pseudogene pseudo 185.333-36 chr4 67666436 67666683 + 1 NA intron (NM_018227, intron 9 of 32) (TA)n|Simple_repeat|Simple_repeat 34596 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 332.667-14 chr7 41974684 41975257 + 1 NA intron (NM_000168, intron 12 of 14) intron (NM_000168, intron 12 of 14) 262239 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 192.167-32 chr7 8356610 8356980 + 1 NA Intergenic Intergenic -76814 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 186.333-21 chr17 59643368 59643607 + 1 NA intron (NM_001288653, intron 1 of 31) L2c|LINE|L2 23592 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 215.667-11 chr12 24644842 24645294 + 1 NA Intergenic Intergenic -60900 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 361.667-14 chr6 63879497 63880027 + 1 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 72926 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 222.333-39 chrX 38654113 38654488 + 1 NA intron (NM_004615, intron 1 of 7) intron (NM_004615, intron 1 of 7) 92822 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 405.167-8 chr8 24556526 24557130 + 1 NA Intergenic L1MEg|LINE|L1 -8210 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 182.167-31 chr8 86176722 86176920 + 1 NA Intergenic Intergenic 53560 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 229.333-24 chr3 54761783 54762163 + 1 NA intron (NM_018398, intron 12 of 37) intron (NM_018398, intron 12 of 37) -122116 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 280.167-16 chr9 29448745 29449115 + 1 NA Intergenic Intergenic -235329 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 280.667-6 chr12 53650489 53650908 + 1 NA Intergenic AluJr|SINE|Alu -24283 NM_001206682 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 327.667-14 chr6 37102608 37103208 + 1 NA Intergenic Intergenic -67244 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 242.5-50 chr9 94747835 94748177 + 1 NA intron (NM_001193331, intron 1 of 7) intron (NM_001193331, intron 1 of 7) -11643 NM_001193329 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 248.667-32 chr5 68120892 68121242 + 1 NA Intergenic FLAM_A|SINE|Alu -68809 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 246.167-17 chr2 58003065 58003606 + 1 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -43307 NM_001130482 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 441.5 chr10 125983642 125984453 + 1 NA intron (NM_001363549, intron 2 of 10) L2a|LINE|L2 -10774 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 172.333-39 chr3 12208384 12208686 + 1 NA Intergenic L1M5|LINE|L1 -49623 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 174.667-41 chr4 95228737 95229194 + 1 NA intron (NM_003728, intron 7 of 15) intron (NM_003728, intron 7 of 15) 137474 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 178.5-12 chr12 33504146 33504456 + 1 NA Intergenic L1MB1|LINE|L1 -64482 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 375.667-2 chr1 187165976 187166453 + 1 NA intron (NR_126347, intron 1 of 3) L1MC4|LINE|L1 73372 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 269.833 chr1 15370103 15370477 + 1 NA intron (NM_052929, intron 25 of 30) L1ME4b|LINE|L1 -26407 NR_148919 101927417 Hs.715313 NR_148918 ENSG00000233485 LOC101927417 - uncharacterized LOC101927417 ncRNA 169.333-56 chr6 157888069 157888381 + 1 NA intron (NM_016224, intron 4 of 17) intron (NM_016224, intron 4 of 17) 64979 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 530.667-3 chr14 58805580 58806489 + 1 NA Intergenic Intergenic -22254 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 466.5-3 chr14 23665822 23666677 + 1 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 29885 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 198.833-17 chr2 75146781 75147179 + 1 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 52540 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 199.667-8 chr10 48260476 48260861 + 1 NA intron (NM_001018071, intron 1 of 28) L1PREC2|LINE|L1 -8911 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 187.5-17 chr14 61147460 61147749 + 1 NA Intergenic Intergenic 133734 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 223.5-22 chr6 134775061 134775481 + 1 NA Intergenic L1M5|LINE|L1 174830 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 230.5-17 chr2 1751070 1751443 + 1 NA Intergenic Intergenic -6741 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 251.667-23 chr20 43007529 43008045 + 1 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 39044 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 300.833 chr1 56353262 56353728 + 1 NA Intergenic L2c|LINE|L2 -61468 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 176.667-46 chr5 22511940 22512116 + 1 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) -298178 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 568.667 chr13 49976214 49977056 + 1 NA Intergenic L2b|LINE|L2 19866 NR_037407 100500908 NR_037407 ENSG00000264864 MIR3613 - microRNA 3613 ncRNA 251.5-31 chr8 119267493 119268002 + 1 NA Intergenic L2c|LINE|L2 -20890 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 217.333-31 chr5 56905150 56905465 + 1 NA Intergenic Intergenic -3953 NR_136556 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 262.333-2 chr1 107517810 107518273 + 1 NA Intergenic Intergenic 170458 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 298.667-12 chr20 63087961 63088400 + 1 NA Intergenic MIRb|SINE|MIR -13112 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 195.667-13 chr13 72055191 72055608 + 1 NA Intergenic MER70C|LTR|ERVL -188195 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 200.5-5 chr11 107858795 107859242 + 1 NA promoter-TSS (NM_017515) promoter-TSS (NM_017515) -231 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 205.333-6 chr10 63903751 63904071 + 1 NA Intergenic AluJo|SINE|Alu -382021 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 220.333-22 chr3 53278712 53279124 + 1 NA Intergenic MLT2B2|LTR|ERVL -22804 NM_001135055 7086 Hs.89643 NM_001064 ENSG00000163931 TKT HEL-S-48|HEL107|SDDHD|TK|TKT1 transketolase protein-coding 206.5-3 chr1 162854444 162854686 + 1 NA 3' UTR (NM_178550, exon 4 of 4) 3' UTR (NM_178550, exon 4 of 4) 14250 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 207.833-19 chr4 18593476 18593720 + 1 NA Intergenic Intergenic -571723 NR_158565 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 172.5-54 chr8 76906614 76906941 + 1 NA Intergenic Intergenic 60073 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 211.833-16 chr4 70584370 70584705 + 1 NA Intergenic Intergenic -7719 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 205.333-38 chr5 32612083 32612406 + 1 NA Intergenic Intergenic 26687 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 221.333-3 chr10 96209190 96209411 + 1 NA intron (NR_047683, intron 7 of 13) intron (NR_047683, intron 7 of 13) 62216 NR_047683 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 195.667-42 chr8 19282459 19282782 + 1 NA Intergenic L1PB3|LINE|L1 -30950 NM_001363110 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 237.333-32 chr6 74857382 74857781 + 1 NA Intergenic Intergenic 271201 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 253.5-33 chr8 20015166 20015510 + 1 NA Intergenic Intergenic 76085 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 167.5-46 chr9 128255382 128255652 + 1 NA TTS (NM_001288737) TTS (NM_001288737) -10487 NR_036110 100422893 NR_036110 ENSG00000264823 MIR3154 mir-3154 microRNA 3154 ncRNA 222.833-15 chr21 30247942 30248403 + 1 NA Intergenic L1ME3A|LINE|L1 -32075 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 334.5-20 chr9 117926028 117926475 + 1 NA Intergenic Intergenic 221848 NM_138557 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 243.167-11 chr4 70255447 70255920 + 1 NA Intergenic MIR|SINE|MIR 13067 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 258.333-7 chr2 26345592 26346048 + 1 NA promoter-TSS (NM_001321975) promoter-TSS (NM_001321975) -9 NM_001321975 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 287.333-13 chr5 7241089 7241652 + 1 NA Intergenic Intergenic 27984 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 225.5-4 chr11 76443495 76443977 + 1 NA Intergenic Intergenic -1282 NM_001300942 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 271.5-21 chr20 49284047 49284533 + 1 NA intron (NR_003604, intron 4 of 4) HERVIP10B3-int|LTR|ERV1 3607 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 263.833-7 chr22 37429158 37429616 + 1 NA Intergenic Intergenic -1908 NM_052906 114794 Hs.344170 NM_052906 ENSG00000166897 ELFN2 LRRC62|PPP1R29 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding 250.667-18 chr2 37297317 37297594 + 1 NA intron (NM_005813, intron 1 of 17) L1MC3|LINE|L1 19629 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 171.667-25 chr19 12757546 12757793 + 1 NA exon (NM_017682, exon 10 of 10) exon (NM_017682, exon 10 of 10) 5878 NM_017682 54831 Hs.435611 NM_017682 ENSG00000039987 BEST2 VMD2L1 bestrophin 2 protein-coding 211.667-40 chr6 132865786 132866160 + 1 NA Intergenic Intergenic 48754 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 268.667-29 chr8 119223250 119223744 + 1 NA intron (NR_149114, intron 3 of 5) intron (NR_149114, intron 3 of 5) 15134 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 240.167-10 chr19 55812311 55812717 + 1 NA intron (NM_001297743, intron 1 of 8) L1M2|LINE|L1 19580 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 188.5-29 chr3 94606346 94606709 + 1 NA Intergenic Intergenic -331736 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 222.5-31 chr5 152170100 152170529 + 1 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 211416 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 312.667-11 chr2 96560396 96560923 + 1 NA Intergenic AluSx|SINE|Alu 22780 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 266.5-18 chr4 33185024 33185416 + 1 NA Intergenic Intergenic 834182 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 195.5-29 chr5 7860996 7861344 + 1 NA exon (NM_024091, exon 6 of 7) exon (NM_024091, exon 6 of 7) 7861 NM_024091 79072 Hs.653162 NM_024091 ENSG00000124279 FASTKD3 - FAST kinase domains 3 protein-coding 322.167-8 chr5 141349690 141350068 + 1 NA promoter-TSS (NM_032095) promoter-TSS (NM_032095) -382 NM_018922 56104 Hs.368160 NM_018922 ENSG00000254221 PCDHGB1 PCDH-GAMMA-B1 protocadherin gamma subfamily B, 1 protein-coding 253.167-6 chr15 35289194 35289598 + 1 NA Intergenic Intergenic 52070 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 170.667-7 chr12 95815752 95816055 + 1 NA intron (NR_135016, intron 1 of 1) intron (NR_135016, intron 1 of 1) 12806 NR_135016 105369920 Hs.145556 NR_135016 ENSG00000258292 LINC02410 - long intergenic non-protein coding RNA 2410 ncRNA 391.167-7 chr2 11211241 11211864 + 1 NA intron (NM_001321643, intron 18 of 32) intron (NM_001321643, intron 18 of 32) 56085 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 164.667-35 chr22 35616605 35616883 + 1 NA intron (NM_203377, intron 2 of 3) MIRb|SINE|MIR 585 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 237.5-33 chr4 45510939 45511200 + 1 NA Intergenic L1PB1|LINE|L1 612985 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 396.333-4 chr3 114939673 114940204 + 1 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -39313 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 269.5-17 chr4 65670292 65670672 + 1 NA promoter-TSS (NM_001281766) promoter-TSS (NM_001281766) 7 NM_004439 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 197.5-38 chrX 39263171 39263513 + 1 NA Intergenic LTR16A2|LTR|ERVL 64020 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 423.167 chr1 26009916 26010731 + 1 NA Intergenic LTR35A|LTR|ERV1 -11452 NM_004455 2134 Hs.150956 NM_004455 ENSG00000158008 EXTL1 EXTL exostosin like glycosyltransferase 1 protein-coding 216.333-19 chr17 44531647 44532046 + 1 NA Intergenic MER39|LTR|ERV1 -25638 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 487.667-3 chr22 31107381 31108290 + 1 NA promoter-TSS (NM_080430) promoter-TSS (NM_080430) -267 NM_080430 140606 Hs.55940 NM_080430 ENSG00000198832 SELENOM SELM|SEPM selenoprotein M protein-coding 178.667-25 chr21 31861343 31861681 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -11508 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 194.167-3 chr1 111500601 111501005 + 1 NA intron (NM_001302678, intron 1 of 1) intron (NM_001302678, intron 1 of 1) 2830 NM_001302678 140 Hs.281342 NM_000677 ENSG00000282608 ADORA3 A3AR adenosine A3 receptor protein-coding 225.667-40 chr9 36584756 36585231 + 1 NA intron (NM_001256688, intron 3 of 15) AluJr|SINE|Alu 12098 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 332.667-12 chr3 24671670 24672057 + 1 NA Intergenic Intergenic -157460 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 227.333-9 chr12 2154033 2154596 + 1 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 69167 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 221.833-21 chr7 84636369 84636659 + 1 NA Intergenic L1MA4A|LINE|L1 104038 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 250.333-2 chr1 61648445 61648778 + 1 NA Intergenic L2a|LINE|L2 -5631 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 259.667-15 chr4 142575596 142576277 + 1 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 270599 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 264.667-11 chr3 88412330 88412715 + 1 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 74066 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 192.5-24 chr20 50681534 50681901 + 1 NA intron (NM_001290268, intron 1 of 21) intron (NM_001290268, intron 1 of 21) 9825 NM_001290268 140876 Hs.372578 NM_080829 ENSG00000042062 RIPOR3 C20orf175|C20orf176|FAM65C RIPOR family member 3 protein-coding 176.5-30 chr5 13249375 13249863 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -216733 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 264.333-7 chr14 51866154 51866492 + 1 NA intron (NM_001243774, intron 1 of 2) (TTTCACT)n|Simple_repeat|Simple_repeat 5711 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 198.333-48 chr9 98451083 98451492 + 1 NA intron (NM_005458, intron 7 of 18) Charlie15a|DNA|hAT-Charlie -195638 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 230.5-5 chr12 110469784 110470134 + 1 NA intron (NM_013300, intron 1 of 6) intron (NM_013300, intron 1 of 6) 1114 NM_013300 29902 Hs.436618 NM_013300 ENSG00000204856 FAM216A C12orf24|HSU79274 family with sequence similarity 216 member A protein-coding 278.833-10 chr7 19081894 19082181 + 1 NA Intergenic Intergenic 35599 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 236.5-30 chr5 74362453 74362771 + 1 NA Intergenic Intergenic 40126 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 192.667-18 chr2 68249431 68249691 + 1 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 2971 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 352.333-12 chr6 44460221 44460649 + 1 NA Intergenic Intergenic 24794 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 194.333-4 chr1 71610861 71611174 + 1 NA intron (NM_173808, intron 5 of 6) intron (NM_173808, intron 5 of 6) 225995 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 249.667-27 chr7 43676967 43677484 + 1 NA intron (NR_163914, intron 1 of 8) intron (NR_163914, intron 1 of 8) 52298 NM_001371309 248.833-16 chr20 48292489 48293066 + 1 NA Intergenic Intergenic -67134 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 167.5-12 chr12 55966505 55966867 + 1 NA promoter-TSS (NM_001798) promoter-TSS (NM_001798) 26 NM_006928 6490 Hs.95972 NM_006928 ENSG00000185664 PMEL D12S53E|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100 premelanosome protein protein-coding 163.833-18 chr16 67036173 67036519 + 1 NA intron (NM_001368707, intron 2 of 4) intron (NM_001368707, intron 2 of 4) 7197 NM_001368709 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor subunit beta protein-coding 267.5-42 chr9 99214955 99215323 + 1 NA Intergenic MIRc|SINE|MIR 6803 NR_024532 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2 alpha-1,3/1,6-mannosyltransferase protein-coding 247.333-7 chr17 14055793 14056152 + 1 NA intron (NR_049718, intron 1 of 2) MLT1D|LTR|ERVL-MaLR 13486 NR_049718 100874058 Hs.720411 NR_049718 ENSG00000236088 COX10-AS1 COX10-AS|COX10AS COX10 antisense RNA 1 ncRNA 242.667-20 chr21 28419151 28419413 + 1 NA Intergenic Intergenic -120036 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 217.167-9 chr12 109427490 109427874 + 1 NA intron (NM_001101421, intron 18 of 30) intron (NM_001101421, intron 18 of 30) 38963 NM_001101421 283446 Hs.512008 NM_173597 ENSG00000174527 MYO1H - myosin IH protein-coding 261.5 chr1 17190442 17190959 + 1 NA intron (NR_148993, intron 1 of 3) intron (NR_148993, intron 1 of 3) 911 NR_148993 400743 Hs.522935 NR_148993 ENSG00000204362 LINC02783 - long intergenic non-protein coding RNA 2783 ncRNA 172.333-16 chr12 100667838 100668206 + 1 NA Intergenic AluSz|SINE|Alu 74404 NM_001303131 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 243.5-23 chr3 189623947 189624370 + 1 NA intron (NM_001329964, intron 1 of 13) L1MB2|LINE|L1 -7231 NM_001329144 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 308.333-11 chr20 24379687 24380265 + 1 NA Intergenic Intergenic -89223 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 201.667-6 chr11 82600260 82600584 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X 133442 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 398.333-11 chr4 47077424 47077921 + 1 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 46105 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 206.5-61 chr9 113038385 113038668 + 1 NA 3' UTR (NM_001282515, exon 4 of 4) 3' UTR (NM_001282515, exon 4 of 4) 18198 NM_001282515 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 212.333-29 chr6 130047941 130048227 + 1 NA intron (NM_001007102, intron 3 of 21) intron (NM_001007102, intron 3 of 21) 28440 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 301.333-2 chr1 237007918 237008400 + 1 NA Intergenic Intergenic -3718 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 170.667-31 chr3 101347795 101347982 + 1 NA exon (NM_001282803, exon 10 of 21) exon (NM_001282803, exon 10 of 21) -27313 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 231.333-10 chr11 62107012 62107353 + 1 NA Intergenic Charlie18a|DNA|hAT-Charlie -16829 NM_020238 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 197.5-9 chr12 114959164 114959507 + 1 NA Intergenic Intergenic -275160 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 214.333-29 chr3 77342234 77342577 + 1 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 244393 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 210.167-12 chr14 64651684 64651909 + 1 NA Intergenic AluJo|SINE|Alu -52628 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 220.5-36 chr5 106165418 106165694 + 1 NA Intergenic Intergenic 845458 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 230.5-14 chr18 1514274 1514536 + 1 NA Intergenic Intergenic -154776 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 271.167-15 chr22 31656852 31657529 + 1 NA intron (NM_001326416, intron 1 of 10) AluSg7|SINE|Alu 5025 NM_001326418 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 266.333-11 chr2 38304763 38305188 + 1 NA intron (NM_001135673, intron 9 of 12) L1MA3|LINE|L1 71555 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 188.5-30 chr3 97991837 97992181 + 1 NA intron (NM_001105580, intron 9 of 9) intron (NM_001105580, intron 9 of 9) -19558 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 183.667-20 chr17 7306481 7306803 + 1 NA promoter-TSS (NM_001143760) promoter-TSS (NM_001143760) -357 NM_001143760 1984 Hs.534314 NM_001970 ENSG00000132507 EIF5A EIF-5A|EIF5A1|eIF5AI eukaryotic translation initiation factor 5A protein-coding 168.333-67 chr9 71674435 71674719 + 1 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 93936 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 186.333-34 chr5 139482088 139482347 + 1 NA 5' UTR (NM_001367258, exon 2 of 7) 5' UTR (NM_001367258, exon 2 of 7) 541 NM_198282 340061 Hs.379754 NM_198282 ENSG00000184584 TMEM173 ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|hMITA|hSTING transmembrane protein 173 protein-coding 220.333-28 chr7 41148804 41149170 + 1 NA Intergenic Intergenic 47383 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 182.667-45 chr6 124854293 124854556 + 1 NA Intergenic Intergenic -108121 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 200.833-6 chr1 210730102 210730574 + 1 NA intron (NM_002238, intron 10 of 10) intron (NM_002238, intron 10 of 10) 400972 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 224.333-37 chr8 129707576 129707948 + 1 NA Intergenic MER45B|DNA|hAT-Tip100 -27523 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 240.5-2 chr12 55468477 55469091 + 1 NA TTS (NM_001005499) TTS (NM_001005499) 1354 NM_001005499 390327 Hs.632718 NM_001005499 ENSG00000184954 OR6C70 - olfactory receptor family 6 subfamily C member 70 protein-coding 169.5-33 chr4 66632481 66633147 + 1 NA Intergenic Intergenic 355990 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 200.667-35 chr3 189964360 189964646 + 1 NA intron (NM_018192, intron 13 of 14) intron (NM_018192, intron 13 of 14) 134581 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 172.5-5 chr10 31354831 31355065 + 1 NA intron (NM_001323675, intron 1 of 6) Kanga11a|DNA|TcMar-Tc2 33288 NM_001323672 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 283.333-14 chr4 114820591 114820988 + 1 NA Intergenic L2c|LINE|L2 164030 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 206.5-28 chr19 424362 424795 + 1 NA intron (NM_012435, intron 10 of 12) intron (NM_012435, intron 10 of 12) -15431 NM_001136263 126567 Hs.223770 NM_001136263 ENSG00000183186 C2CD4C FAM148C|KIAA1957|NLF3 C2 calcium dependent domain containing 4C protein-coding 303.667-10 chr2 200193021 200193513 + 1 NA Intergenic Intergenic -112612 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 204.333-40 chr5 133641117 133641608 + 1 NA Intergenic Intergenic -28821 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 233.667-2 chr10 58148836 58149126 + 1 NA Intergenic MER5B|DNA|hAT-Charlie 118913 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 188.667-47 chr7 131513652 131513935 + 1 NA intron (NM_001018111, intron 1 of 8) intron (NM_001018111, intron 1 of 8) 42835 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 236.5 chr1 96867055 96867308 + 1 NA Intergenic Intergenic 144543 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 167.833-26 chr2 81550943 81551160 + 1 NA Intergenic Intergenic -84105 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 196.5-29 chr3 119448415 119448957 + 1 NA intron (NM_018266, intron 4 of 8) intron (NM_018266, intron 4 of 8) 14929 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 205.667-41 chr8 85975285 85975629 + 1 NA Intergenic L2b|LINE|L2 94211 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 319.667 chr1 118650243 118650598 + 1 NA Intergenic Intergenic 337923 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 292.833-6 chr16 66433797 66434101 + 1 NA intron (NM_001136106, intron 1 of 3) intron (NM_001136106, intron 1 of 3) 6654 NM_001197225 146227 Hs.97805 NM_001136106 ENSG00000166546 BEAN1 BEAN|SCA31 brain expressed associated with NEDD4 1 protein-coding 265.5-11 chr17 63549902 63550246 + 1 NA promoter-TSS (NM_005828) promoter-TSS (NM_005828) -403 NM_005828 10238 Hs.410596 NM_005828 ENSG00000136485 DCAF7 AN11|HAN11|SWAN-1|WDR68 DDB1 and CUL4 associated factor 7 protein-coding 248.833-17 chr3 88180549 88180842 + 1 NA Intergenic Charlie2b|DNA|hAT-Charlie 30736 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 168.667-17 chr14 73724031 73724221 + 1 NA intron (NM_001367710, intron 9 of 12) MIR3|SINE|MIR -9742 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 197.667-34 chr20 59124956 59125200 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -65942 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 252.667-9 chr12 70936337 70936836 + 1 NA Intergenic LTR45C|LTR|ERV1 -15848 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 198.167-13 chr14 44446366 44446620 + 1 NA Intergenic AluJb|SINE|Alu 60790 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 204.333-16 chr15 65527186 65527691 + 1 NA Intergenic L1ME3|LINE|L1 -3025 NM_016395 51495 Hs.512973 NM_016395 ENSG00000074696 HACD3 B-IND1|BIND1|HSPC121|PTPLAD1 3-hydroxyacyl-CoA dehydratase 3 protein-coding 300.333-15 chrX 111218980 111219441 + 1 NA intron (NR_136747, intron 17 of 17) (AAT)n|Simple_repeat|Simple_repeat 51273 NM_014289 827 Hs.496593 NM_014289 ENSG00000077274 CAPN6 CANPX|CAPNX|CalpM|DJ914P14.1 calpain 6 protein-coding 264.833-8 chr14 55257025 55257425 + 1 NA Intergenic Intergenic -14196 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 234.333-13 chr15 68443146 68443469 + 1 NA Intergenic L1MEg|LINE|L1 -11144 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 187.667-36 chr5 84274781 84275023 + 1 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 109965 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 379.333-6 chr22 36939929 36940516 + 1 NA 3' UTR (NM_000395, exon 14 of 14) 3' UTR (NM_000395, exon 14 of 14) -25026 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 194.167-8 chr11 78690924 78691337 + 1 NA intron (NM_001098816, intron 28 of 33) L2b|LINE|L2 -116266 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 206.5-7 chr11 23168675 23168931 + 1 NA Intergenic Intergenic 250387 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 165.5-30 chr21 16063411 16063593 + 1 NA Intergenic L1ME3|LINE|L1 -6986 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 218.333-30 chr8 105002073 105002439 + 1 NA Intergenic Intergenic -316182 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 178.5-39 chr8 96339922 96340435 + 1 NA Intergenic Intergenic 46470 NR_125829 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 264.667-8 chr19 40634353 40634743 + 1 NA Intergenic Intergenic 33179 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 246.333-40 chr8 68105507 68105872 + 1 NA 3' UTR (NM_025170, exon 24 of 24) 3' UTR (NM_025170, exon 24 of 24) 153643 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 235.5-14 chr3 95897080 95897551 + 1 NA Intergenic Intergenic -214122 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 213.667-2 chr10 105933186 105933504 + 1 NA Intergenic L1MA8|LINE|L1 -113012 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 250.667-10 chr15 62769646 62770132 + 1 NA intron (NM_015059, intron 38 of 55) intron (NM_015059, intron 38 of 55) -54068 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 328.167-10 chr7 3828563 3829026 + 1 NA intron (NM_152744, intron 5 of 44) AluJr|SINE|Alu -300891 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 226.333-20 chr5 62786489 62786913 + 1 NA Intergenic Intergenic 207882 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 280.833-10 chr20 51146628 51147201 + 1 NA Intergenic Intergenic -123807 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 168.333-43 chr3 51371780 51372207 + 1 NA intron (NM_004947, intron 49 of 52) intron (NM_004947, intron 49 of 52) -13298 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 193.667-23 chr15 90694633 90694924 + 1 NA intron (NR_120372, intron 2 of 3) L1MC1|LINE|L1 22362 NR_120372 101926895 Hs.564760 NR_120372 ENSG00000259736 CRTC3-AS1 - CRTC3 antisense RNA 1 ncRNA 377.333-4 chr20 14593570 14594031 + 1 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 39416 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 243.667-16 chr15 92277889 92278242 + 1 NA Intergenic ERVL-E-int|LTR|ERVL -115816 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 167.167-33 chr7 78663465 78663655 + 1 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) 316318 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 186.667-15 chr10 62418138 62418542 + 1 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -43213 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 176.667-37 chr3 34622945 34623139 + 1 NA Intergenic L1MB4|LINE|L1 770981 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 165.833-36 chr8 78957961 78958259 + 1 NA Intergenic L1MA9|LINE|L1 120581 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 191.667-10 chr12 10622887 10623192 + 1 NA intron (NM_018423, intron 8 of 10) intron (NM_018423, intron 8 of 10) -9430 NR_135120 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 250.667-44 chr8 106539086 106539642 + 1 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) 91440 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 404.333 chr11 65569731 65570459 + 1 NA promoter-TSS (NM_006396) promoter-TSS (NM_006396) 318 NR_038923 254100 Hs.595927 NR_038923 SSSCA1-AS1 - SSSCA1 antisense RNA 1 (head to head) ncRNA 209.5-7 chr11 117273102 117273469 + 1 NA intron (NM_001077239, intron 6 of 14) Charlie1|DNA|hAT-Charlie -18061 NR_037803 100379571 Hs.736305 NR_037803 BACE1-AS BACE1-AS1|BACE1AS|NCRNA00177 BACE1 antisense RNA ncRNA 194.333-31 chr6 112843612 112843888 + 1 NA Intergenic L1PA13|LINE|L1 496420 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 200.333-3 chr1 55036267 55036498 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -3094 NM_174936 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 241.167-20 chr20 31526940 31527214 + 1 NA intron (NM_178580, intron 1 of 12) AluSz|SINE|Alu 12635 NM_178582 81502 Hs.373741 NM_030789 ENSG00000101294 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1 histocompatibility minor 13 protein-coding 223.667-44 chr6 143560531 143560836 + 1 NA intron (NR_027113, intron 1 of 2) L2c|LINE|L2 1368 NR_110149 285740 Hs.432656 NR_027113 ENSG00000235740 PHACTR2-AS1 - PHACTR2 antisense RNA 1 ncRNA 196.333-20 chr2 8876799 8877132 + 1 NA intron (NR_135606, intron 7 of 12) intron (NR_135606, intron 7 of 12) -39352 NM_001348729 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 204.667-5 chr1 221550038 221550431 + 1 NA Intergenic Intergenic 186666 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 241.333-29 chr5 137318307 137318842 + 1 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 180752 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 180.5-34 chr5 96056674 96057192 + 1 NA intron (NR_130776, intron 1 of 4) MER57B2|LTR|ERV1 -22205 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 222.667-7 chr11 41794505 41794760 + 1 NA intron (NR_120584, intron 2 of 5) MER57A-int|LTR|ERV1 80064 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 218.167-22 chr8 59119529 59119757 + 1 NA promoter-TSS (NM_014729) promoter-TSS (NM_014729) 433 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 172.333-48 chr6 62294540 62294720 + 1 NA Intergenic L1MB5|LINE|L1 -8403 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 167.5-15 chr14 76247829 76248132 + 1 NA Intergenic Intergenic 93626 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 289.833-3 chr12 15818894 15819454 + 1 NA Intergenic Intergenic -29786 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 263.333-24 chr7 39092153 39092461 + 1 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -78740 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 180.667-15 chr12 30287872 30288070 + 1 NA Intergenic L1MB7|LINE|L1 389273 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 172.167-28 chr7 11167352 11167565 + 1 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 193586 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 198.5-10 chr12 116390144 116390369 + 1 NA Intergenic Intergenic 38062 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 202.833-10 chr17 56708271 56708583 + 1 NA Intergenic Intergenic 114728 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 195.333-23 chr4 163484654 163484979 + 1 NA Intergenic L1ME3G|LINE|L1 -9874 NM_018352 55319 Hs.267446 NM_018352 ENSG00000198498 TMA16 C4orf43 translation machinery associated 16 homolog protein-coding 201.167-16 chr19 42645413 42646076 + 1 NA intron (NR_073180, intron 2 of 2) LTR34|LTR|ERV1 -50820 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 214.5-24 chr3 135965165 135965585 + 1 NA promoter-TSS (NM_001190447) promoter-TSS (NM_001190447) -353 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 328.667-10 chr20 48796206 48796684 + 1 NA intron (NM_020820, intron 1 of 39) L1ME4b|LINE|L1 31554 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 212.833-9 chr14 78280341 78280591 + 1 NA intron (NM_001366425, intron 3 of 19) L2a|LINE|L2 110093 NM_001366425 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 177.667-24 chr2 223459290 223459500 + 1 NA Intergenic Intergenic 142966 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 170.833-26 chr4 152821458 152821647 + 1 NA intron (NM_001287433, intron 2 of 8) L1PB3|LINE|L1 41598 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 278.333-2 chr1 75497750 75498041 + 1 NA intron (NM_001320285, intron 2 of 25) L1MEi|LINE|L1 113219 NM_001320285 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 251.667-21 chr2 117432703 117432982 + 1 NA Intergenic MIR|SINE|MIR -381849 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 209.333-26 chr3 164230447 164230925 + 1 NA Intergenic MLT1F|LTR|ERVL-MaLR -59130 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 299.833-17 chr9 3240543 3240888 + 1 NA intron (NM_134428, intron 16 of 17) intron (NM_134428, intron 16 of 17) 59126 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 214.333-37 chr5 131276330 131276596 + 1 NA intron (NM_001038702, intron 1 of 4) intron (NM_001038702, intron 1 of 4) 12454 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 230.667-7 chr14 23664309 23664616 + 1 NA Intergenic Intergenic 28098 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 363.667-8 chr2 77854022 77854749 + 1 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -61549 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 182.5-40 chr8 90143521 90143854 + 1 NA Intergenic Intergenic -60808 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 180.667-19 chr15 33151037 33151584 + 1 NA exon (NM_001277314, exon 5 of 5) exon (NM_001277314, exon 5 of 5) 43404 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 163.333-62 chrX 45758010 45758300 + 1 NA Intergenic Intergenic -11031 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 211.5-7 chr10 33958157 33958490 + 1 NA Intergenic L2b|LINE|L2 -185643 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 235.333-18 chr3 153051168 153051582 + 1 NA Intergenic MIRb|SINE|MIR -110851 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 285.667-7 chr13 53302835 53303481 + 1 NA Intergenic Intergenic -151258 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 280.667-14 chr6 28335319 28335694 + 1 NA intron (NM_001243242, intron 1 of 3) LTR25|LTR|ERV1 628 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 183.667-56 chr8 17246899 17247167 + 1 NA promoter-TSS (NM_001322092) promoter-TSS (NM_001322092) 75 NM_152415 137492 Hs.343873 NM_152415 ENSG00000155975 VPS37A HCRP1|PQBP2|SPG53 VPS37A subunit of ESCRT-I protein-coding 231.833-10 chr2 60046122 60046353 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 336799 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 296.667-15 chr3 183283916 183284263 + 1 NA intron (NM_015078, intron 14 of 29) intron (NM_015078, intron 14 of 29) 30836 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 204.833-5 chr10 62252804 62253406 + 1 NA intron (NM_001282941, intron 2 of 4) L1MC4|LINE|L1 15739 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 275.333-9 chr2 106556161 106556690 + 1 NA Intergenic L1ME4a|LINE|L1 69061 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 223.333-47 chr8 133518677 133519030 + 1 NA intron (NM_003033, intron 2 of 8) MIRb|SINE|MIR 53034 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 250.333-17 chr6 100571896 100572472 + 1 NA intron (NM_006828, intron 36 of 41) MLT1A0|LTR|ERVL-MaLR -108509 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 462.333-2 chr19 2961883 2962476 + 1 NA Intergenic L1ME1|LINE|L1 -15385 NR_138612 79816 Hs.334507 NM_024760 ENSG00000104953 TLE6 GRG6|PREMBL TLE family member 6, subcortical maternal complex member protein-coding 186.667-48 chr5 67425305 67425751 + 1 NA Intergenic L1MA9|LINE|L1 221261 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 254.667-20 chr3 46617283 46617701 + 1 NA intron (NM_001195442, intron 2 of 2) L1MC1|LINE|L1 4967 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 205.5-17 chr17 6021035 6021248 + 1 NA Intergenic Intergenic -49473 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 174.667-44 chr5 23994307 23994535 + 1 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 43073 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 271.667-24 chr8 114792875 114793447 + 1 NA Intergenic Intergenic 874852 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 196.333-32 chr3 178434610 178434869 + 1 NA intron (NR_046786, intron 1 of 2) intron (NR_046786, intron 1 of 2) 15538 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 188.333-13 chr14 26450445 26450811 + 1 NA intron (NM_006489, intron 3 of 3) intron (NM_006489, intron 3 of 3) 102802 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 192.333 chr1 50633196 50633535 + 1 NA intron (NM_007051, intron 8 of 18) intron (NM_007051, intron 8 of 18) -209922 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 179.667-41 chr6 6724472 6724685 + 1 NA Intergenic Intergenic -101752 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 265.5-25 chr5 57441211 57441643 + 1 NA Intergenic Intergenic 41384 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 223.333-44 chr7 36792819 36793233 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -68477 NM_001177506 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 198.5-19 chr18 78092995 78093210 + 1 NA Intergenic Intergenic -99375 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 266.667-23 chr8 17245820 17246222 + 1 NA promoter-TSS (NM_001363171) promoter-TSS (NM_001363171) 437 NM_001322089 29883 Hs.587465 NM_013354 ENSG00000198791 CNOT7 CAF-1|CAF1|Caf1a|hCAF-1 CCR4-NOT transcription complex subunit 7 protein-coding 193.667-47 chr6 45888800 45889061 + 1 NA Intergenic L1ME4b|LINE|L1 48667 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 244.167-28 chr8 123384278 123384651 + 1 NA intron (NM_014109, intron 1 of 27) intron (NM_014109, intron 1 of 27) 11983 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 167.333-31 chr2 201202876 201203098 + 1 NA intron (NM_001230, intron 5 of 7) L1MC5a|LINE|L1 19846 NM_001306083 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 259.833-2 chr1 208845053 208845363 + 1 NA Intergenic Intergenic 116520 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 241.167-25 chr9 19852630 19853157 + 1 NA Intergenic L1PA10|LINE|L1 -65874 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 334.167-4 chr17 48192634 48193261 + 1 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -36436 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 263.667-3 chr10 72558205 72558573 + 1 NA intron (NM_006077, intron 3 of 11) L1MEi|LINE|L1 -34403 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 280.5-21 chr8 116674678 116675084 + 1 NA intron (NM_003756, intron 2 of 7) Kanga1|DNA|TcMar-Tc2 22781 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 172.667-36 chr20 43581353 43581660 + 1 NA intron (NM_170693, intron 12 of 12) L1ME4a|LINE|L1 -9431 NM_001323581 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 184.833-15 chr19 50031432 50031616 + 1 NA intron (NM_015428, intron 2 of 4) L2c|LINE|L2 5519 NM_015428 25888 Hs.440553 NM_015428 ENSG00000142528 ZNF473 ZFP100|ZN473 zinc finger protein 473 protein-coding 276.167-16 chr4 102827880 102828410 + 1 NA promoter-TSS (NM_181886) promoter-TSS (NM_181886) 35 NM_181889 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 167.5-9 chr11 15223370 15223586 + 1 NA intron (NM_001042536, intron 8 of 12) intron (NM_001042536, intron 8 of 12) 74376 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 182.5-22 chr2 64144434 64144716 + 1 NA promoter-TSS (NM_020651) promoter-TSS (NM_020651) -155 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 186.667-65 chr8 140060859 140061085 + 1 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 39563 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 360.333-4 chr19 11988638 11989122 + 1 NA intron (NR_134929, intron 1 of 2) LTR13_|LTR|ERVK 1263 NR_134929 101928464 Hs.631643 NR_134927 ENSG00000219665 ZNF433-AS1 - ZNF433 and ZNF878 antisense RNA 1 ncRNA 234.5-25 chr2 135368218 135368669 + 1 NA intron (NM_001286569, intron 3 of 21) intron (NM_001286569, intron 3 of 21) 162142 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 248.667-15 chr18 8987152 8987608 + 1 NA Intergenic Intergenic -115319 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 301.833-8 chr22 27228005 27228306 + 1 NA Intergenic L1MC5a|LINE|L1 -3476 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 262.333-18 chr5 162890731 162891099 + 1 NA Intergenic Intergenic -546656 NR_157053 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 190.5-10 chr12 118182663 118182860 + 1 NA intron (NM_001346490, intron 15 of 21) intron (NM_001346490, intron 15 of 21) 7774 NM_001346497 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 173.5-37 chr21 29596495 29596803 + 1 NA non-coding (NR_033368, exon 1 of 3) non-coding (NR_033368, exon 1 of 3) 609 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 247.333-5 chr15 48615636 48616119 + 1 NA intron (NM_000138, intron 2 of 65) intron (NM_000138, intron 2 of 65) 29911 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 293.333-4 chr11 58900465 58900882 + 1 NA Intergenic Intergenic -4725 NM_001354699 92292 Hs.38085 NM_080661 ENSG00000166840 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase like 1 protein-coding 242.5-47 chr8 105426606 105427231 + 1 NA intron (NM_001362837, intron 2 of 7) AluSx3|SINE|Alu 107375 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 176.667-27 chr2 187316100 187316419 + 1 NA Intergenic MIRb|SINE|MIR 131993 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 188.833-27 chr3 105355453 105355671 + 1 NA Intergenic L2b|LINE|L2 -11151 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 177.667-4 chr1 225772531 225772753 + 1 NA Intergenic Intergenic -5171 NM_001130440 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 168.333-65 chr8 85409583 85409854 + 1 NA Intergenic L1MB7|LINE|L1 -29141 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 175.667-46 chr6 56826585 56826828 + 1 NA intron (NM_001144770, intron 2 of 94) L1ME3G|LINE|L1 16959 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 260.333-15 chr3 52411850 52412226 + 1 NA intron (NM_001321127, intron 1 of 10) AluJb|SINE|Alu 1378 NM_001321127 51533 Hs.372719 NM_016483 ENSG00000010318 PHF7 HSPC045|HSPC226|NYD-SP6 PHD finger protein 7 protein-coding 387.333-5 chr3 8441642 8442166 + 1 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 59754 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 176.167-31 chr4 67593360 67593816 + 1 NA intron (NM_012108, intron 8 of 8) intron (NM_012108, intron 8 of 8) 34861 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 173.5-14 chr12 43727831 43728128 + 1 NA 3' UTR (NM_001098614, exon 9 of 9) 3' UTR (NM_001098614, exon 9 of 9) 30811 NM_001271826 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 243.333-35 chr5 31084676 31085243 + 1 NA Intergenic Intergenic -108727 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 465.5-3 chr22 37561517 37562230 + 1 NA intron (NM_152243, intron 1 of 2) CpG 1393 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 241.667-4 chr10 92654391 92654682 + 1 NA 3' UTR (NM_004523, exon 22 of 22) 3' UTR (NM_004523, exon 22 of 22) -35419 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 172.333-55 chr9 13058757 13059022 + 1 NA Intergenic Intergenic -86256 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 242.833-8 chr14 60634465 60634819 + 1 NA Intergenic UCON35|Unknown|Unknown -4574 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 323.5-8 chr17 32483308 32484085 + 1 NA TTS (NM_001270482) TTS (NM_001270482) -3297 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 218.5-13 chr12 111997810 111998199 + 1 NA intron (NM_138341, intron 2 of 9) MER65C|LTR|ERV1 15161 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 240.5-18 chr3 24659314 24659609 + 1 NA Intergenic L1MA5A|LINE|L1 -163753 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 291.833-6 chr16 84972786 84973221 + 1 NA Intergenic Intergenic 38532 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 301.5-15 chr4 71743251 71743740 + 1 NA intron (NM_000583, intron 12 of 12) intron (NM_000583, intron 12 of 12) 40584 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 216.5-16 chr15 35300707 35301096 + 1 NA Intergenic Intergenic 63575 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 344.5-15 chr7 79675903 79676317 + 1 NA Intergenic L1MEg|LINE|L1 222150 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 202.667-36 chr6 74707402 74707660 + 1 NA Intergenic MIRb|SINE|MIR 421251 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 190.667-15 chr12 66301868 66302152 + 1 NA promoter-TSS (NR_135080) promoter-TSS (NR_135080) -483 NM_001370285 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 206.333-33 chr6 155493756 155494207 + 1 NA Intergenic Intergenic -20863 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 281.833-11 chr5 25543587 25544067 + 1 NA Intergenic L1MDa|LINE|L1 352874 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 168.667-4 chr10 62193253 62193491 + 1 NA 3' UTR (NM_145307, exon 12 of 12) 3' UTR (NM_145307, exon 12 of 12) 75472 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 164.667-24 chr18 52730889 52731171 + 1 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 390833 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 249.667-8 chr12 52035140 52035466 + 1 NA intron (NM_001202233, intron 1 of 7) intron (NM_001202233, intron 1 of 7) -2412 NM_001202234 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 222.5-22 chr20 53092362 53092777 + 1 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -92714 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 192.333-18 chr15 59879785 59880103 + 1 NA Intergenic Intergenic -124367 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 220.5-14 chr15 61141424 61141839 + 1 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 87671 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 185.167-12 chr17 54531815 54532214 + 1 NA Intergenic Intergenic -368677 NM_001321175 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 224.667-15 chr14 74067373 74067967 + 1 NA intron (NM_001278593, intron 7 of 11) AluJb|SINE|Alu 16783 NM_001278593 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 193.667-12 chr11 14111377 14111808 + 1 NA intron (NM_006108, intron 5 of 15) intron (NM_006108, intron 5 of 15) 148869 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 164.333-35 chr3 194892939 194893219 + 1 NA Intergenic HAL1|LINE|L1 -124370 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 232.333-12 chr18 77404454 77405070 + 1 NA Intergenic Intergenic 154914 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 224.333-6 chr10 76501822 76502075 + 1 NA intron (NM_001305581, intron 6 of 6) L1PA16|LINE|L1 -386096 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 185.667-23 chr18 3868340 3868722 + 1 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 5771 NM_001242764 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 256.333-8 chr14 66512053 66512374 + 1 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 4806 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 203.833-15 chr21 33168223 33168615 + 1 NA intron (NR_024102, intron 3 of 3) L2|LINE|L2 1817 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 543.167-2 chr3 51389306 51390156 + 1 NA TTS (NM_006010) TTS (NM_006010) -1554 NM_013286 29890 Hs.118738 NM_013286 ENSG00000259956 RBM15B HUMAGCGB|HsOTT3|OTT3 RNA binding motif protein 15B protein-coding 220.667-6 chr10 11614864 11615293 + 1 NA Intergenic AluSz|SINE|Alu -3289 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 199.833-17 chr17 14675307 14675701 + 1 NA Intergenic Intergenic -339301 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 163.667-10 chr11 100809955 100810126 + 1 NA intron (NM_152432, intron 3 of 23) L1M5|LINE|L1 -122085 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 192.5-23 chr20 37575882 37576223 + 1 NA Intergenic Intergenic 47067 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 375.333-4 chr12 68235970 68236499 + 1 NA Intergenic Intergenic -10424 NM_018402 55801 Hs.272350 NM_018402 ENSG00000111536 IL26 AK155|IL-26 interleukin 26 protein-coding 220.833-13 chr17 67220691 67221211 + 1 NA intron (NM_001330447, intron 3 of 32) intron (NM_001330447, intron 3 of 32) -23825 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 229.333-14 chr14 42036545 42036947 + 1 NA Intergenic L1MC|LINE|L1 429890 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 269.667-16 chr22 40287854 40288291 + 1 NA intron (NM_015088, intron 10 of 20) intron (NM_015088, intron 10 of 20) -58428 NM_000026 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 283.167-5 chr13 46962365 46962771 + 1 NA Intergenic Intergenic -65492 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 216.667-22 chr18 74017428 74017676 + 1 NA Intergenic AluJo|SINE|Alu 130282 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 168.333-15 chr12 81026419 81026721 + 1 NA Intergenic L1M5|LINE|L1 -51509 NM_024560 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 204.5-33 chr8 13193555 13193822 + 1 NA intron (NM_001348082, intron 5 of 16) LFSINE_Vert|SINE|tRNA -60399 NM_001348084 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 214.167-9 chr18 9334773 9335287 + 1 NA intron (NM_020648, intron 1 of 4) CpG 257 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 219.333-36 chr6 46564215 46564631 + 1 NA intron (NM_016593, intron 10 of 11) AluSx1|SINE|Alu -72356 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 353.667-6 chr19 45506279 45506930 + 1 NA promoter-TSS (NM_003370) promoter-TSS (NM_003370) -875 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator stimulated phosphoprotein protein-coding 215.333-44 chr7 94023066 94023437 + 1 NA Intergenic Intergenic -18896 NM_001317739 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 239.167-6 chr11 56013566 56013973 + 1 NA Intergenic Intergenic -16650 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 224.667-31 chr20 1695991 1696281 + 1 NA Intergenic L1ME4b|LINE|L1 -38357 NM_080816 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 223.5-5 chr11 84299859 84300179 + 1 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 17320 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 198.5-2 chr1 106497324 106497655 + 1 NA Intergenic (AAAAAAC)n|Simple_repeat|Simple_repeat -320750 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 279.333-20 chr7 5677758 5678169 + 1 NA intron (NR_046834, intron 1 of 2) intron (NR_046834, intron 1 of 2) 2498 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 270.5-12 chr17 4359028 4359485 + 1 NA intron (NM_003342, intron 1 of 5) intron (NM_003342, intron 1 of 5) 7418 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 228.667-17 chr18 72693364 72693749 + 1 NA Intergenic MER61-int|LTR|ERV1 -149214 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 253.667-29 chr3 153170179 153170576 + 1 NA 3' UTR (NM_002886, exon 1 of 1) 3' UTR (NM_002886, exon 1 of 1) 8151 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 191.333-11 chr13 69171826 69172071 + 1 NA Intergenic AluSz|SINE|Alu -50398 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 188.333-31 chr5 26520887 26521227 + 1 NA Intergenic L1ME3A|LINE|L1 517529 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 166.333-20 chr15 57785153 57785401 + 1 NA Intergenic MER58A|DNA|hAT-Charlie 78563 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 191.167-2 chr1 169345736 169345958 + 1 NA intron (NR_104229, intron 1 of 12) L2a|LINE|L2 21950 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 250.333-8 chr10 106589395 106589680 + 1 NA intron (NM_001206569, intron 24 of 25) intron (NM_001206569, intron 24 of 25) 449372 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 182.833-19 chr2 69163296 69163640 + 1 NA intron (NM_032208, intron 13 of 17) intron (NM_032208, intron 13 of 17) 59786 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 226.333-12 chr2 126244902 126245210 + 1 NA Intergenic Intergenic -127071 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 224.167-14 chr18 7891454 7892033 + 1 NA intron (NM_002845, intron 3 of 30) AluSz|SINE|Alu 324427 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 242.5-41 chr6 2933814 2934211 + 1 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 28118 NM_001271825 5269 Hs.519523 NM_004568 ENSG00000124570 SERPINB6 CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3 serpin family B member 6 protein-coding 268.833-17 chr4 172836687 172837394 + 1 NA intron (NM_001034845, intron 7 of 12) intron (NM_001034845, intron 7 of 12) -110162 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 327.833 chr1 173450178 173450518 + 1 NA intron (NR_125960, intron 1 of 1) L1MEf|LINE|L1 11014 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 204.667-31 chr3 84340755 84341028 + 1 NA Intergenic Intergenic 528684 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 239.5-7 chr13 67224478 67224864 + 1 NA 3' UTR (NM_001318374, exon 2 of 2) 3' UTR (NM_001318374, exon 2 of 2) 5665 NM_001318374 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 245.333-9 chr14 35418034 35418407 + 1 NA Intergenic MIR3|SINE|MIR -13466 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 184.333-17 chr16 61757967 61758288 + 1 NA intron (NM_001796, intron 8 of 11) MLT1G1-int|LTR|ERVL-MaLR 278311 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 169.833-23 chr20 46216001 46216368 + 1 NA intron (NM_021248, intron 5 of 11) intron (NM_021248, intron 5 of 11) 92314 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 227.5-3 chr1 31296731 31297081 + 1 NA promoter-TSS (NM_004814) promoter-TSS (NM_004814) -76 NM_001282567 51538 Hs.524094 NM_016505 ENSG00000121766 ZCCHC17 HSPC251|PS1D|pNO40 zinc finger CCHC-type containing 17 protein-coding 400.5-4 chr18 6239731 6240403 + 1 NA intron (NM_001365769, intron 8 of 16) intron (NM_001365769, intron 8 of 16) -16677 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 343.5-11 chr3 45592855 45593397 + 1 NA Intergenic Intergenic -1625 NM_014240 8994 Hs.193370 NM_014240 ENSG00000144791 LIMD1 - LIM domains containing 1 protein-coding 256.333-7 chr12 109009306 109009848 + 1 NA intron (NM_018711, intron 1 of 15) AluSx1|SINE|Alu 11491 NM_018711 55530 Hs.4221 NM_018711 ENSG00000166111 SVOP - SV2 related protein protein-coding 334.167 chr1 166230281 166230630 + 1 NA Intergenic L1PA11|LINE|L1 -63700 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 194.333-25 chr2 149271258 149271772 + 1 NA Intergenic L2a|LINE|L2 -58470 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 392.833-4 chr2 70965027 70965668 + 1 NA TTS (NM_001692) TTS (NM_001692) -13098 NM_001369683 79998 Hs.512744 NM_024933 ENSG00000144031 ANKRD53 - ankyrin repeat domain 53 protein-coding 370.5-15 chr9 99966817 99967216 + 1 NA intron (NM_017919, intron 6 of 7) intron (NM_017919, intron 6 of 7) 60362 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 204.333-18 chr2 40715897 40716166 + 1 NA Intergenic L2a|LINE|L2 -203596 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 373.5-2 chr12 84912875 84913424 + 1 NA promoter-TSS (NM_001146335) promoter-TSS (NM_001146335) -320 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 235.333-31 chrX 153763734 153764190 + 1 NA promoter-TSS (NM_005393) promoter-TSS (NM_005393) -234 NM_001163257 5365 Hs.632833 NM_005393 ENSG00000198753 PLXNB3 PLEXB3|PLEXR|PLXN6 plexin B3 protein-coding 188.5-31 chr3 185165701 185165936 + 1 NA intron (NR_038990, intron 1 of 6) intron (NR_038990, intron 1 of 6) 2917 NR_038990 339926 Hs.567848 NR_038990 ENSG00000223358 EHHADH-AS1 - EHHADH antisense RNA 1 ncRNA 189.5-36 chr7 10643362 10643617 + 1 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -59187 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 207.833-22 chr5 143341661 143341890 + 1 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 61508 NM_001364185 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 232.667-26 chr3 53609057 53609334 + 1 NA intron (NM_001128840, intron 3 of 47) AluY|SINE|Alu 114584 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 220.5-12 chr14 65746815 65747247 + 1 NA Intergenic MER102b|DNA|hAT-Charlie 275929 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 355.833-10 chr7 5673192 5673629 + 1 NA intron (NR_046834, intron 1 of 2) intron (NR_046834, intron 1 of 2) 7051 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 278.5-21 chr7 96648236 96648603 + 1 NA intron (NR_038948, intron 2 of 4) intron (NR_038948, intron 2 of 4) 15919 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 247.667-8 chr14 38127586 38128094 + 1 NA Intergenic Intergenic -80064 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 168.5-10 chr11 7695170 7695541 + 1 NA intron (NM_198185, intron 11 of 14) intron (NM_198185, intron 11 of 14) 11122 NM_198185 341277 Hs.532475 NM_198185 ENSG00000183378 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 288.5-4 chr1 206503842 206504236 + 1 NA Intergenic Intergenic -3492 NM_182664 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 172.333-9 chr11 56521876 56522126 + 1 NA Intergenic Intergenic 21256 NM_001005245 219487 Hs.553632 NM_001005245 ENSG00000255223 OR5M11 OR11-199 olfactory receptor family 5 subfamily M member 11 protein-coding 196.333-42 chr6 124756629 124757003 + 1 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -205729 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 217.333-40 chr6 106885910 106886298 + 1 NA Intergenic Intergenic 87935 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 223.667-12 chr12 15521162 15521496 + 1 NA intron (NM_030667, intron 10 of 26) intron (NM_030667, intron 10 of 26) -25282 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 354.5-9 chr5 120525478 120526059 + 1 NA intron (NM_016644, intron 2 of 2) intron (NM_016644, intron 2 of 2) -5696 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 399.333-6 chr13 21016918 21017543 + 1 NA intron (NM_014572, intron 2 of 7) intron (NM_014572, intron 2 of 7) 44356 NM_014572 26524 Hs.78960 NM_014572 ENSG00000150457 LATS2 KPM large tumor suppressor kinase 2 protein-coding 187.167-26 chr5 159156886 159157261 + 1 NA TTS (NM_001199381) TTS (NM_001199381) 50575 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 558.167 chr1 197915308 197916283 + 1 NA intron (NM_001014434, intron 1 of 5) (TTCC)n|Simple_repeat|Simple_repeat -1577 NM_001370213 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 239.667-38 chr6 127505908 127506184 + 1 NA intron (NM_001012279, intron 4 of 11) MIR3|SINE|MIR 12978 NM_001012279 387104 Hs.319247 NM_001012279 ENSG00000255330 SOGA3 C6orf174|dJ403A15.3 SOGA family member 3 protein-coding 201.5-15 chr15 80359608 80359918 + 1 NA Intergenic MamRep1527|LTR|LTR -17958 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 197.833-26 chr5 14992844 14993060 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -121174 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 321.333-2 chr1 189257308 189257760 + 1 NA Intergenic Intergenic 1218476 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 271.5-16 chr19 27777711 27778103 + 1 NA Intergenic Intergenic -15524 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 304.5-11 chr14 71911442 71912015 + 1 NA Intergenic MER72|LTR|ERV1 -20443 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 252.5-15 chr21 40143539 40144044 + 1 NA intron (NR_073202, intron 17 of 32) AluY|SINE|Alu 68640 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 163.167-37 chr5 122844311 122844859 + 1 NA promoter-TSS (NR_146145) promoter-TSS (NR_146145) -864 NR_146145 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 248.667-17 chr2 75899513 75899971 + 1 NA Intergenic Intergenic -188827 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 221.5-14 chr22 48771911 48772189 + 1 NA Intergenic L1ME3D|LINE|L1 -8245 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 174.667-15 chr14 60517940 60518372 + 1 NA Intergenic Intergenic 9010 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 276.333-7 chr22 19441008 19441481 + 1 NA 3' UTR (NM_001166242, exon 3 of 3) 3' UTR (NM_001166242, exon 3 of 3) 6988 NM_001166242 128977 Hs.659565 NM_173793 ENSG00000242259 C22orf39 - chromosome 22 open reading frame 39 protein-coding 187.5-8 chr1 244655810 244656090 + 1 NA intron (NM_016076, intron 1 of 4) intron (NM_016076, intron 1 of 4) 2824 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 256.333-19 chr5 141004446 141005061 + 1 NA intron (NM_018911, intron 3 of 3) intron (NM_018911, intron 3 of 3) 37986 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 290.333-11 chr19 33290148 33290712 + 1 NA Intergenic Intergenic 12104 NM_001287424 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT enhancer binding protein alpha protein-coding 191.667-29 chr20 5023912 5024307 + 1 NA Intergenic L1MB3|LINE|L1 -13796 NM_203327 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 191.667-44 chr8 66925568 66925827 + 1 NA promoter-TSS (NR_152598) promoter-TSS (NR_152598) -156 NR_002599 641638 Hs.372680 NR_002599 ENSG00000245910 SNHG6 HBII-276HG|NCRNA00058|U87HG small nucleolar RNA host gene 6 ncRNA 314.333-9 chr6 170566298 170566824 + 1 NA intron (NM_003194, intron 4 of 7) intron (NM_003194, intron 4 of 7) 12192 NM_003194 6908 Hs.590872 NM_003194 ENSG00000112592 TBP GTF2D|GTF2D1|HDL4|SCA17|TFIID TATA-box binding protein protein-coding 335.667-6 chr13 45047269 45047779 + 1 NA Intergenic Intergenic 57986 NM_001316952 55425 Hs.731811 NM_018559 ENSG00000133114 GPALPP1 AD029|KIAA1704|LSR7|bA245H20.2 GPALPP motifs containing 1 protein-coding 174.5-2 chr10 60203939 60204248 + 1 NA intron (NM_001204403, intron 12 of 43) intron (NM_001204403, intron 12 of 43) -63077 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 236.667-31 chr7 93863463 93863826 + 1 NA Intergenic L1M6|LINE|L1 27109 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 258.667-2 chr10 65834913 65835370 + 1 NA Intergenic Intergenic 263716 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 202.667-2 chr1 93239055 93239403 + 1 NA intron (NM_001306076, intron 19 of 28) intron (NM_001306076, intron 19 of 28) 58513 NM_001306076 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 247.667-31 chr5 152695801 152696173 + 1 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) 276362 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 338.5-4 chr17 55361173 55361717 + 1 NA Intergenic L1M4b|LINE|L1 60390 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 243.667-29 chr20 35757828 35758156 + 1 NA Intergenic MIRb|SINE|MIR -14023 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 208.667-30 chr20 38826227 38826551 + 1 NA intron (NM_015568, intron 1 of 10) intron (NM_015568, intron 1 of 10) 20692 NM_015568 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 184.667-42 chr5 127203958 127204314 + 1 NA Intergenic L1MB1|LINE|L1 -86628 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 286.5-9 chr20 56558856 56559344 + 1 NA Intergenic Intergenic -18463 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 253.167-12 chr18 6960661 6961187 + 1 NA intron (NM_005559, intron 53 of 62) MIRb|SINE|MIR 6247 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 258.667-8 chr14 72950673 72951163 + 1 NA intron (NM_001352448, intron 8 of 13) intron (NM_001352448, intron 8 of 13) 24454 NM_001352447 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 235.167-2 chr1 86389961 86390297 + 1 NA intron (NM_001366779, intron 1 of 15) L1PB1|LINE|L1 5932 NM_001366784 57489 Hs.149360 NM_020729 ENSG00000122417 ODF2L - outer dense fiber of sperm tails 2 like protein-coding 208.833-4 chr10 5685480 5686022 + 1 NA non-coding (NR_135800, exon 2 of 2) non-coding (NR_135800, exon 2 of 2) 913 NM_001321784 54906 Hs.610717 NM_017782 ENSG00000108021 TASOR2 C10orf18|FAM208B|bA318E3.2 transcription activation suppressor family member 2 protein-coding 214.667-35 chr5 35863533 35863941 + 1 NA intron (NR_120485, intron 2 of 5) intron (NR_120485, intron 2 of 5) 6846 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 365.5-5 chr10 114876970 114877618 + 1 NA intron (NM_001135051, intron 16 of 16) intron (NM_001135051, intron 16 of 16) 55514 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 289.5-2 chr11 99302693 99303080 + 1 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) -253259 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 307.833-5 chr20 64038495 64039096 + 1 NA 3' UTR (NM_001348090, exon 7 of 7) 3' UTR (NM_001348090, exon 7 of 7) 5068 NM_001348090 284739 Hs.97840 NM_207349 ENSG00000196421 C20orf204 LINC00176|NCRNA00176|PRR17 chromosome 20 open reading frame 204 protein-coding 250.667-45 chr9 31243273 31243787 + 1 NA Intergenic Intergenic 137960 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 410.167-2 chr1 54499336 54499987 + 1 NA Intergenic CpG -48567 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 261.333-18 chr7 107044269 107044595 + 1 NA promoter-TSS (NM_002736) promoter-TSS (NM_002736) -273 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 390.5-10 chr8 30144158 30144628 + 1 NA intron (NM_001100916, intron 1 of 2) AluSz6|SINE|Alu 272 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 FKSG89|GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 184.5-30 chr20 61154951 61155305 + 1 NA Intergenic Intergenic 76064 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 187.667-21 chr15 78560677 78560896 + 1 NA Intergenic Intergenic -4734 NM_001307945 1138 Hs.1614 NM_000745 ENSG00000169684 CHRNA5 LNCR2 cholinergic receptor nicotinic alpha 5 subunit protein-coding 203.333-29 chr2 39267278 39267551 + 1 NA intron (NM_003618, intron 26 of 33) AluSx3|SINE|Alu -23431 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 249.333-17 chr2 106605390 106606020 + 1 NA Intergenic Intergenic 118341 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 204.833-22 chr5 36657808 36658029 + 1 NA intron (NM_004172, intron 3 of 9) L3|LINE|CR1 51312 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 240.5-25 chr7 36295433 36295865 + 1 NA intron (NM_030636, intron 6 of 7) L1M5|LINE|L1 71591 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 189.667-43 chr5 129477321 129477788 + 1 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -16865 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 241.5-12 chr3 29769464 29769918 + 1 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 164465 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 249.667-19 chr20 54328667 54329210 + 1 NA Intergenic Intergenic 120851 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 272.5-12 chr17 20125326 20125658 + 1 NA intron (NM_001033553, intron 3 of 14) intron (NM_001033553, intron 3 of 14) -30580 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 206.833-20 chr5 146376077 146376481 + 1 NA Intergenic AluJo|SINE|Alu 37440 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 225.333-22 chr18 74597650 74598121 + 1 NA promoter-TSS (NR_024484) promoter-TSS (NR_024484) -50 NR_024484 400657 Hs.61508 NM_001008234 ENSG00000264247 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 184.333-29 chr5 18116373 18116640 + 1 NA Intergenic Intergenic 309232 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 244.167-6 chr10 93680592 93680865 + 1 NA intron (NM_145246, intron 11 of 13) intron (NM_145246, intron 11 of 13) 21844 NM_001347715 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 231.5-6 chr11 95845367 95845806 + 1 NA intron (NM_001243571, intron 13 of 17) intron (NM_001243571, intron 13 of 17) 55088 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 171.333-39 chr4 115919729 115919963 + 1 NA Intergenic L1MD|LINE|L1 -379879 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 297.667-3 chr1 160675330 160675958 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -28333 NM_003037 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 305.833-5 chr14 20994348 20994877 + 1 NA exon (NM_001029991, exon 8 of 13) exon (NM_001029991, exon 8 of 13) 4551 NR_110139 101929718 Hs.706252 NR_110139 ENSG00000258471 LOC101929718 - uncharacterized LOC101929718 ncRNA 216.5-9 chr11 18987661 18988002 + 1 NA Intergenic LTR10F|LTR|ERV1 -52829 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 189.167-19 chr16 74034625 74035241 + 1 NA Intergenic Intergenic 180588 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 325.5-23 chrX 16436709 16437686 + 1 NA Intergenic Intergenic 189888 NR_039762 100616428 NR_039762 ENSG00000265144 MIR548AM - microRNA 548am ncRNA 173.667-2 chr1 224354395 224354584 + 1 NA Intergenic Tigger7|DNA|TcMar-Tigger -2390 NR_102347 29097 Hs.445890 NM_014184 ENSG00000143771 CNIH4 CNIH-4|CNIH2|HSPC163 cornichon family AMPA receptor auxiliary protein 4 protein-coding 386.5-8 chr4 70602532 70603137 + 1 NA exon (NM_016519, exon 8 of 13) exon (NM_016519, exon 8 of 13) 10578 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 184.333-41 chr8 51423338 51423823 + 1 NA exon (NM_144651, exon 14 of 23) exon (NM_144651, exon 14 of 23) 385865 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 219.667-8 chr16 62903137 62903405 + 1 NA Intergenic Intergenic -866833 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 283.167-12 chr20 8955157 8955798 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR -113577 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 169.5-41 chr6 153952740 153952931 + 1 NA Intergenic L1MC5|LINE|L1 -57661 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 205.5-19 chr2 58944586 58944877 + 1 NA intron (NR_033873, intron 6 of 13) L1MEc|LINE|L1 -272977 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 326.667-3 chr19 45902375 45903169 + 1 NA promoter-TSS (NM_001012643) promoter-TSS (NM_001012643) -159 NM_001012643 339344 Hs.515478 NM_001012643 ENSG00000176182 MYPOP P42pop Myb related transcription factor, partner of profilin protein-coding 325.5-10 chr17 62166101 62166578 + 1 NA Intergenic L1ME4a|LINE|L1 -101061 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 205.667-33 chr5 38752921 38753350 + 1 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -32862 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 228.667-4 chr10 13307524 13307946 + 1 NA Intergenic AluSp|SINE|Alu -7605 NM_001323082 5264 Hs.498732 NM_006214 ENSG00000107537 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 295.333 chr1 151980268 151980629 + 1 NA Intergenic Intergenic 13411 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 219.333-38 chr6 112517989 112518332 + 1 NA Intergenic MER57A-int|LTR|ERV1 170830 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 231.5-8 chr13 21134067 21134514 + 1 NA Intergenic AluJr|SINE|Alu -6224 NM_005870 10284 Hs.524899 NM_005870 ENSG00000150459 SAP18 2HOR0202|SAP18P Sin3A associated protein 18 protein-coding 249.667-10 chr13 23440445 23440777 + 1 NA Intergenic Intergenic -6909 NM_014363 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 298.333-2 chr1 103201415 103201770 + 1 NA Intergenic Intergenic -93070 NM_080630 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 218.333-17 chr22 49724774 49725068 + 1 NA Intergenic CpG -67402 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 246.5-27 chr5 42410653 42411023 + 1 NA Intergenic Intergenic -12601 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 228.333-33 chr9 32889614 32889929 + 1 NA Intergenic LTR103_Mam|LTR|ERV1? 106231 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 210.5-18 chr17 59680392 59680674 + 1 NA intron (NM_001288653, intron 18 of 31) intron (NM_001288653, intron 18 of 31) 27065 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 183.333-2 chr1 77948994 77949249 + 1 NA intron (NM_003902, intron 19 of 19) intron (NM_003902, intron 19 of 19) 29951 NR_146539 8880 Hs.567380 NM_003902 ENSG00000162613 FUBP1 FBP|FUBP|hDH V far upstream element binding protein 1 protein-coding 208.5-18 chr2 39741025 39741425 + 1 NA intron (NR_135664, intron 11 of 11) intron (NR_135664, intron 11 of 11) 38033 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 254.333-23 chr2 118648833 118649354 + 1 NA Intergenic Intergenic -46127 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 185.333-40 chr5 145692098 145692342 + 1 NA Intergenic L2c|LINE|L2 143122 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 163.667-38 chr3 184780454 184780665 + 1 NA Intergenic Intergenic -7404 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LINC02069 - long intergenic non-protein coding RNA 2069 ncRNA 350.667 chr10 21336425 21336998 + 1 NA Intergenic Intergenic 36239 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 213.333-38 chr6 70587739 70588101 + 1 NA intron (NM_145267, intron 2 of 2) MIR|SINE|MIR 20990 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 217.167-11 chr15 45805805 45806167 + 1 NA intron (NR_135680, intron 1 of 4) intron (NR_135680, intron 1 of 4) 100791 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 211.333-28 chr3 104628929 104629198 + 1 NA Intergenic Intergenic -737650 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 224.5-46 chr9 130103325 130103791 + 1 NA intron (NM_020960, intron 12 of 17) intron (NM_020960, intron 12 of 17) 40661 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 231.333-3 chr1 62746678 62746976 + 1 NA Intergenic Intergenic -37279 NM_178221 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 258.333-4 chr10 71305912 71306273 + 1 NA Intergenic AluSx1|SINE|Alu -13161 NR_033413 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 235.5-16 chr4 37994035 37994422 + 1 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 33830 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 214.667-42 chr8 24634497 24634750 + 1 NA Intergenic Intergenic -86005 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 217.667-12 chr11 47135431 47135779 + 1 NA intron (NM_001003677, intron 3 of 8) intron (NM_001003677, intron 3 of 8) 41274 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 169.333-2 chr1 38143536 38143992 + 1 NA Intergenic HERV16-int|LTR|ERVL 54533 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 251.333-2 chr1 207078023 207078390 + 1 NA TTS (NM_006212) TTS (NM_006212) -10654 NM_001017365 725 Hs.99886 NM_000716 ENSG00000123843 C4BPB C4BP complement component 4 binding protein beta protein-coding 197.833-17 chr18 72761181 72761668 + 1 NA intron (NR_148694, intron 7 of 11) intron (NR_148694, intron 7 of 11) 91958 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 165.833 chr1 26286007 26286278 + 1 NA intron (NM_001077262, intron 4 of 10) intron (NM_001077262, intron 4 of 10) 6056 NM_031286 83442 Hs.109051 NM_031286 ENSG00000142669 SH3BGRL3 HEL-S-297|SH3BP-1|TIP-B1 SH3 domain binding glutamate rich protein like 3 protein-coding 163.667-23 chr17 78704164 78704442 + 1 NA intron (NM_001365041, intron 3 of 12) MER5B|DNA|hAT-Charlie 12729 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 192.667-25 chr3 72152648 72152858 + 1 NA intron (NR_038221, intron 1 of 2) intron (NR_038221, intron 1 of 2) 1496 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 257.5 chr1 31122866 31123359 + 1 NA Intergenic Intergenic -57395 NM_001020658 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 164.333-3 chr1 72507295 72507468 + 1 NA Intergenic Intergenic -224842 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 362.5-13 chr6 75895970 75896424 + 1 NA intron (NM_001368137, intron 30 of 33) intron (NM_001368137, intron 30 of 33) 146958 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 177.667-20 chr18 45880089 45880388 + 1 NA intron (NM_020964, intron 31 of 43) intron (NM_020964, intron 31 of 43) 54563 NM_213602 284266 Hs.287692 NM_213602 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig like lectin 15 protein-coding 190.333-18 chr16 54672962 54673259 + 1 NA Intergenic Intergenic 175123 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 209.167-15 chr16 65947173 65947399 + 1 NA Intergenic MIRc|SINE|MIR -370986 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 281.833-14 chr6 27214790 27215121 + 1 NA Intergenic AluSx|SINE|Alu -32746 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP serine protease 16 protein-coding 213.167-10 chr19 27379293 27380029 + 1 NA Intergenic ALR/Alpha|Satellite|centr -413770 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 239.5-12 chr16 31459478 31459745 + 1 NA exon (NM_001105247, exon 1 of 6) exon (NM_001105247, exon 1 of 6) 615 NM_001105247 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 265.5-27 chr6 117867268 117867626 + 1 NA Intergenic Intergenic -39817 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 211.167-2 chr1 58250540 58250832 + 1 NA promoter-TSS (NM_021080) promoter-TSS (NM_021080) -139 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 220.167-4 chr11 82434504 82434873 + 1 NA Intergenic Intergenic -30775 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 337.667-2 chr12 88145678 88146289 + 1 NA intron (NM_001366583, intron 1 of 11) intron (NM_001366583, intron 1 of 11) 3676 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 203.167-12 chr18 65724891 65725362 + 1 NA Intergenic Intergenic -25126 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 308.166-5 chr2 47016379 47017079 + 1 NA intron (NM_001288951, intron 11 of 20) intron (NM_001288951, intron 11 of 20) -74874 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 236.333-21 chr3 125137405 125137840 + 1 NA intron (NM_001195483, intron 4 of 12) intron (NM_001195483, intron 4 of 12) 13930 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 216.333-27 chr22 27255699 27256073 + 1 NA Intergenic L2c|LINE|L2 -31207 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 281.667-5 chr10 23582245 23582552 + 1 NA Intergenic MER77B|LTR|ERVL -112329 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 270.833-17 chr7 125198471 125199067 + 1 NA intron (NR_110188, intron 3 of 8) intron (NR_110188, intron 3 of 8) 14200 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 208.333-28 chr4 46457574 46457920 + 1 NA Intergenic L1MA4|LINE|L1 -67619 NM_000807 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 281.5-23 chr7 122531875 122532357 + 1 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 167001 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 401.5 chr1 45393411 45394176 + 1 NA intron (NM_007170, intron 3 of 10) intron (NM_007170, intron 3 of 10) -53323 NM_001048171 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 242.667-25 chr7 53054142 53054491 + 1 NA Intergenic AluSx1|SINE|Alu 18683 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 326.333-2 chr11 67054860 67055442 + 1 NA Intergenic Intergenic -1696 NM_014578 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 200.667-11 chr12 115801682 115802065 + 1 NA Intergenic Intergenic 346781 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 181.667-18 chr17 63835150 63835431 + 1 NA intron (NM_001330439, intron 5 of 12) AluJr4|SINE|Alu 3438 NM_001330440 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p|SGD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 173.5-5 chr1 228959516 228959734 + 1 NA Intergenic MER4D|LTR|ERV1 215176 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 313.667-3 chr12 57779216 57779714 + 1 NA intron (NM_206914, intron 3 of 3) intron (NM_206914, intron 3 of 3) -3280 NM_001172697 10102 Hs.632704 NM_005726 ENSG00000123297 TSFM EFTS|EFTSMT Ts translation elongation factor, mitochondrial protein-coding 217.333-6 chr10 81321056 81321403 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -553965 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 280.333-26 chr7 94081587 94082104 + 1 NA Intergenic Intergenic -77490 NM_001317739 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 226.167-7 chr14 23829864 23830169 + 1 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -123754 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 222.333-33 chr8 105584922 105585470 + 1 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 265653 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 234.5-24 chr2 108824242 108824634 + 1 NA intron (NM_001351559, intron 10 of 11) Tigger3b|DNA|TcMar-Tigger 37667 NR_147236 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 236.167-5 chr13 68268161 68268610 + 1 NA Intergenic MIRb|SINE|MIR 616940 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 204.333-42 chr6 54722265 54722623 + 1 NA Intergenic Intergenic -124327 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 253.667-10 chr12 81265603 81266185 + 1 NA intron (NM_001282536, intron 27 of 29) intron (NM_001282536, intron 27 of 29) -13295 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 189.5-32 chr6 14210776 14211126 + 1 NA Intergenic CpG 74503 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 180.167-13 chr2 141669935 141670250 + 1 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 461609 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 179.167-24 chr7 124660281 124660475 + 1 NA Intergenic AluSz6|SINE|Alu 105414 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 196.333-2 chr1 51193018 51193380 + 1 NA Intergenic L1MA4|LINE|L1 41897 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 240.333-11 chr2 110911127 110911467 + 1 NA intron (NM_001371254, intron 11 of 18) L1MB7|LINE|L1 178724 NM_001371254 205.5-25 chr4 32985302 32985681 + 1 NA Intergenic Intergenic 634453 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 206.667-15 chr14 94437049 94437408 + 1 NA Intergenic L1MEg|LINE|L1 15572 NM_001080451 256394 Hs.145890 NM_001080451 ENSG00000186910 SERPINA11 - serpin family A member 11 protein-coding 187.667-32 chr3 50616559 50616980 + 1 NA promoter-TSS (NM_001243925) promoter-TSS (NM_001243925) -362 NM_004635 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 296.5-26 chr8 136187888 136188295 + 1 NA Intergenic Intergenic -342707 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 210.333-10 chr10 103127044 103127525 + 1 NA intron (NM_001351176, intron 2 of 17) intron (NM_001351176, intron 2 of 17) 26537 NM_001351193 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 274.667-6 chr12 3248315 3248867 + 1 NA intron (NM_001168320, intron 2 of 7) MIRc|SINE|MIR 117531 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 243.667-22 chr2 65005845 65006194 + 1 NA intron (NM_003038, intron 3 of 7) AluJo|SINE|Alu 16620 NM_003038 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 180.333-18 chr14 54903214 54903418 + 1 NA promoter-TSS (NM_001024070) promoter-TSS (NM_001024070) -490 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 230.5-11 chr17 5330278 5330587 + 1 NA intron (NM_001291582, intron 2 of 4) intron (NM_001291582, intron 2 of 4) 48148 NM_001291581 9135 Hs.584784 NM_004703 ENSG00000029725 RABEP1 RAB5EP|RABPT5 rabaptin, RAB GTPase binding effector protein 1 protein-coding 312.333-17 chr22 34394965 34395626 + 1 NA Intergenic L2b|LINE|L2 -472407 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 216.333-9 chr11 39062195 39062596 + 1 NA Intergenic L1MB2|LINE|L1 413537 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 207.333-18 chr16 55353788 55354203 + 1 NA Intergenic Tigger7|DNA|TcMar-Tigger 29436 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 356.667 chr11 79602500 79603169 + 1 NA Intergenic MIR3|SINE|MIR -161804 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 353.833 chr1 41493616 41494245 + 1 NA Intergenic MIRc|SINE|MIR -9247 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 332.833-4 chr10 114150637 114151189 + 1 NA intron (NM_001321829, intron 5 of 16) AluSx|SINE|Alu 23266 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 168.333-38 chr2 184330152 184330479 + 1 NA Intergenic Intergenic -48660 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 297.5-4 chr11 13911271 13911655 + 1 NA Intergenic L1ME4a|LINE|L1 13400 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 203.333-34 chr22 44514113 44514439 + 1 NA Intergenic L1MEd|LINE|L1 -16043 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 249.667-24 chr5 124468477 124469032 + 1 NA Intergenic LFSINE_Vert|SINE|tRNA -30234 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 216.333-24 chr2 9995281 9995667 + 1 NA intron (NM_198182, intron 12 of 15) AluJb|SINE|Alu 43781 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 163.5-5 chr1 242516840 242517141 + 1 NA intron (NM_001320272, intron 2 of 10) L1ME3|LINE|L1 7706 NM_152666 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 398.333-12 chr4 64789385 64790041 + 1 NA Intergenic Intergenic 214787 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 187.167 chr1 25484415 25484630 + 1 NA intron (NM_018202, intron 7 of 10) intron (NM_018202, intron 7 of 10) 53625 NM_018202 55219 Hs.189782 NM_018202 ENSG00000204178 MACO1 MACOILIN|TMEM57 macoilin 1 protein-coding 304.667-14 chr5 39167833 39168446 + 1 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 51424 NM_001349333 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 343.667-5 chr11 110429756 110430159 + 1 NA promoter-TSS (NM_004109) promoter-TSS (NM_004109) 9 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 211.5-41 chr7 2368044 2368308 + 1 NA intron (NM_001037283, intron 9 of 18) AluSz|SINE|Alu 13349 NM_001037283 8662 Hs.371001 NM_003751 ENSG00000106263 EIF3B EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 eukaryotic translation initiation factor 3 subunit B protein-coding 401.167-3 chr1 198155902 198156708 + 1 NA promoter-TSS (NM_133494) promoter-TSS (NM_133494) -693 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 271.667-22 chr7 27140170 27140475 + 1 NA promoter-TSS (NR_038832) promoter-TSS (NR_038832) -42 NR_038832 100133311 Hs.610216 NR_038831 ENSG00000254369 HOXA-AS3 HOXA6as HOXA cluster antisense RNA 3 ncRNA 200.5-29 chr2 203017735 203017946 + 1 NA intron (NM_001114132, intron 2 of 54) intron (NM_001114132, intron 2 of 54) 2961 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 339.833-4 chr14 44897117 44897467 + 1 NA promoter-TSS (NM_001017923) promoter-TSS (NM_001017923) 17 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 264.833-10 chr15 64046476 64046879 + 1 NA promoter-TSS (NM_001363730) promoter-TSS (NM_001363730) -192 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 364.833-7 chr9 88612343 88612727 + 1 NA Intergenic L1PA15|LINE|L1 77357 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 195.5-38 chr8 105222077 105222521 + 1 NA Intergenic Intergenic -96139 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 269.5-20 chr5 4093755 4094400 + 1 NA Intergenic Intergenic 498245 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 403.167-5 chr5 116502463 116503088 + 1 NA intron (NM_001300780, intron 2 of 19) intron (NM_001300780, intron 2 of 19) 55277 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 245.167-9 chr2 15567954 15568377 + 1 NA Intergenic Intergenic -6831 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 203.333-52 chr6 92782984 92783263 + 1 NA Intergenic Intergenic 636436 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 280.167 chr10 102669731 102670201 + 1 NA Intergenic Intergenic 25471 NM_030912 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 187.333-26 chr2 121596098 121596314 + 1 NA intron (NM_015282, intron 2 of 38) intron (NM_015282, intron 2 of 38) 53256 NM_015282 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 259.333-25 chr5 22703748 22704197 + 1 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 149372 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 253.833-7 chr2 239707964 239708346 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -54705 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 236.667-22 chr5 17832707 17833148 + 1 NA intron (NR_134286, intron 2 of 7) L3|LINE|CR1 25653 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 239.333 chr1 242796720 242797226 + 1 NA Intergenic Intergenic -272276 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 237.667-36 chr7 82614599 82614985 + 1 NA Intergenic HAL1|LINE|L1 -170836 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 291.333-11 chr2 134080725 134081054 + 1 NA Intergenic Intergenic -39046 NM_001371457 187.667-33 chr3 69855603 69855987 + 1 NA intron (NM_001354608, intron 2 of 10) intron (NM_001354608, intron 2 of 10) -10429 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 169.5-20 chr2 97864602 97864800 + 1 NA intron (NM_015348, intron 4 of 40) L1MEh|LINE|L1 130295 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 210.333-8 chr10 64115524 64115882 + 1 NA Intergenic MIR3|SINE|MIR -593813 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 177.667-2 chr1 167046569 167046767 + 1 NA Intergenic Intergenic 43709 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 211.5-15 chr12 98542814 98543112 + 1 NA intron (NM_001032284, intron 4 of 5) intron (NM_001032284, intron 4 of 5) -26737 NR_027157 100128191 Hs.594042 NR_027157 ENSG00000257167 TMPO-AS1 - TMPO antisense RNA 1 ncRNA 193.333-25 chr18 67143667 67144045 + 1 NA Intergenic Intergenic 62272 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 248.333-16 chr2 120011233 120011675 + 1 NA Intergenic Intergenic -1623 NM_001184937 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 252.667-23 chr8 120451929 120452360 + 1 NA intron (NM_022045, intron 4 of 21) intron (NM_022045, intron 4 of 21) 6725 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 193.833-31 chr9 14096353 14096595 + 1 NA intron (NR_161384, intron 7 of 7) intron (NR_161384, intron 7 of 7) 84328 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 247.667-5 chr12 20464510 20464939 + 1 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 95479 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 163.167-6 chr10 81401496 81401890 + 1 NA Intergenic Tigger3|DNA|TcMar-Tigger -473501 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 201.667-17 chr17 67250284 67250764 + 1 NA intron (NR_136398, intron 1 of 3) AluSc|SINE|Alu -5328 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 219.167-10 chr2 182438029 182438458 + 1 NA intron (NM_005019, intron 1 of 14) MamRep137|DNA|TcMar-Tigger -11195 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 241.333 chr1 47200931 47201321 + 1 NA Intergenic Intergenic -11090 NM_005764 10158 Hs.431099 NM_005764 ENSG00000162366 PDZK1IP1 DD96|MAP17|SPAP PDZK1 interacting protein 1 protein-coding 174.667-18 chr17 50218950 50219375 + 1 NA Intergenic AluJb|SINE|Alu 4468 NR_110806 101927230 Hs.514326 NR_110806 LINC01969 - long intergenic non-protein coding RNA 1969 ncRNA 186.667-70 chrX 106398017 106398214 + 1 NA Intergenic LTR53-int|LTR|ERVL -213815 NM_001184782 55086 Hs.274267 NM_018015 ENSG00000147231 RADX CXorf57 RPA1 related single stranded DNA binding protein, X-linked protein-coding 213.167-14 chr2 59476871 59477129 + 1 NA Intergenic L1MA8|LINE|L1 259292 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 202.5-10 chr11 11435239 11435596 + 1 NA intron (NM_001363464, intron 2 of 9) intron (NM_001363464, intron 2 of 9) -82167 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 195.5-18 chr2 40210893 40211188 + 1 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 219264 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 231.333-33 chr7 21427110 21427362 + 1 NA promoter-TSS (NM_001326542) promoter-TSS (NM_001326542) -847 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 233.833-11 chr19 45809486 45809893 + 1 NA intron (NM_030785, intron 2 of 5) intron (NM_030785, intron 2 of 5) 5619 NM_030785 81492 Hs.146544 NM_030785 ENSG00000104941 RSPH6A RSHL1|RSP4|RSP6|RSPH4B radial spoke head 6 homolog A protein-coding 188.5-51 chr7 125069593 125069853 + 1 NA intron (NR_125718, intron 4 of 10) intron (NR_125718, intron 4 of 10) -114846 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 208.333-31 chr5 16877726 16878080 + 1 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 58385 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 209.667-21 chr20 6809903 6810233 + 1 NA Intergenic L1MB3|LINE|L1 42382 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 201.167-13 chr16 66395864 66396190 + 1 NA intron (NM_001795, intron 7 of 11) intron (NM_001795, intron 7 of 11) -12497 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 367.667-5 chr4 86646333 86646821 + 1 NA intron (NM_080685, intron 2 of 47) AluSz6|SINE|Alu 52262 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 194.167-34 chr6 134883332 134883611 + 1 NA Intergenic L2|LINE|L2 66630 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 265.333-2 chr1 173473838 173474179 + 1 NA intron (NR_037845, intron 1 of 2) intron (NR_037845, intron 1 of 2) 3147 NR_037845 100506023 Hs.731284 NR_037845 LOC100506023 - uncharacterized LOC100506023 ncRNA 257.5-24 chr4 43828603 43828909 + 1 NA Intergenic MER4A1|LTR|ERV1 -188105 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 168.667-32 chr4 11297325 11297591 + 1 NA Intergenic MIRc|SINE|MIR -71369 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 366.667-7 chr4 154503590 154504020 + 1 NA Intergenic Intergenic -12006 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 218.167-10 chr16 1337593 1337948 + 1 NA intron (NM_001199096, intron 1 of 32) intron (NM_001199096, intron 1 of 32) 1573 NM_001199096 8938 Hs.458427 NM_003933 ENSG00000007516 BAIAP3 BAP3 BAI1 associated protein 3 protein-coding 253.667-14 chr15 45532623 45533077 + 1 NA intron (NR_022014, intron 3 of 5) MER41A|LTR|ERV1 -4401 NR_145777 109617005 NR_145777 ENSG00000207516 SNORA41B - small nucleolar RNA, H/ACA box 41B snoRNA 185.667-9 chr10 58762341 58762666 + 1 NA intron (NM_001080512, intron 3 of 20) (TTGT)n|Simple_repeat|Simple_repeat 47488 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 164.5-53 chr8 58830144 58830483 + 1 NA intron (NM_014729, intron 5 of 8) AmnSINE1|SINE|5S-Deu-L2 -170460 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 357.333-15 chr8 116728464 116729100 + 1 NA intron (NM_003756, intron 1 of 7) MIRb|SINE|MIR 27041 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 220.5-33 chr3 136537340 136537640 + 1 NA intron (NM_005862, intron 6 of 33) Charlie7|DNA|hAT-Charlie 214888 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 199.667-43 chr7 51342347 51342725 + 1 NA Intergenic AluSq|SINE|Alu -25675 NM_001346444 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 278.333-8 chr14 66923464 66923874 + 1 NA intron (NM_001024218, intron 7 of 21) intron (NM_001024218, intron 7 of 21) -265771 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 215.5-16 chr5 95121376 95121630 + 1 NA intron (NM_024717, intron 1 of 22) L1MA3|LINE|L1 -39637 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 261.5-37 chr8 130392485 130392991 + 1 NA intron (NM_001247996, intron 2 of 30) MSTB1|LTR|ERVL-MaLR 50922 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 265.333-15 chr4 33494357 33494783 + 1 NA Intergenic Intergenic 545323 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 300.167-6 chr19 40777599 40778043 + 1 NA promoter-TSS (NR_037791) promoter-TSS (NR_037791) -398 NR_037791 100529264 Hs.631539 NR_037791 RAB4B-EGLN2 EGLN2|EIT-6|EIT6|HIF-PH1|HPH-1|HPH-3|PHD1|RERT-lncRNA RAB4B-EGLN2 readthrough (NMD candidate) ncRNA 170.167-28 chr3 30767771 30768057 + 1 NA intron (NM_207359, intron 14 of 14) L1M5|LINE|L1 126747 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 195.333-11 chr12 126617307 126617779 + 1 NA Intergenic HERVI-int|LTR|ERV1 72775 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 183.5-17 chr17 59541091 59541332 + 1 NA Intergenic Intergenic -14354 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 290.667-11 chr2 16773816 16774311 + 1 NA Intergenic Intergenic -108229 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 218.667-7 chr14 30650906 30651426 + 1 NA intron (NM_016106, intron 9 of 24) intron (NM_016106, intron 9 of 24) 28847 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 296.333-21 chr8 121247556 121247929 + 1 NA Intergenic L1P1|LINE|L1 -391604 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 213.667-34 chr4 38641992 38642273 + 1 NA intron (NR_026804, intron 1 of 7) L1MEc|LINE|L1 -22067 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 166.333-10 chr11 14677772 14678248 + 1 NA intron (NM_000922, intron 1 of 15) AluSz6|SINE|Alu 34206 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 231.667-24 chr5 143543847 143544199 + 1 NA Intergenic Intergenic -108511 NM_001018077 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 237.667-17 chr2 9561022 9561316 + 1 NA Intergenic AluSx|SINE|Alu -5339 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 175.667-24 chr2 5757451 5757812 + 1 NA Intergenic Intergenic 54965 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 239.5-32 chr6 100654859 100655136 + 1 NA intron (NM_006828, intron 17 of 41) intron (NM_006828, intron 17 of 41) -191322 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 301.5-11 chr16 75517375 75517819 + 1 NA Intergenic Intergenic 17573 NM_024533 23563 Hs.745424 NM_012126 ENSG00000135702 CHST5 I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST carbohydrate sulfotransferase 5 protein-coding 254.5-6 chr12 61803775 61804222 + 1 NA intron (NM_178539, intron 2 of 4) MIRb|SINE|MIR 388841 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 343.667-12 chr3 107320390 107321094 + 1 NA intron (NR_028302, intron 2 of 3) intron (NR_028302, intron 2 of 3) -56697 NM_032600 84692 Hs.164799 NM_032600 ENSG00000138483 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 198.333-5 chr10 6919944 6920258 + 1 NA Intergenic Intergenic 140503 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 191.333-25 chr2 213843055 213843394 + 1 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 85157 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 260.5-24 chr7 45874567 45875151 + 1 NA Intergenic L1M5|LINE|L1 -13629 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 207.5-41 chrX 49980916 49981249 + 1 NA intron (NM_001127899, intron 3 of 14) intron (NM_001127899, intron 3 of 14) -22066 NR_030241 693124 NR_030241 ENSG00000207758 MIR532 MIRN532|hsa-mir-532|mir-532 microRNA 532 ncRNA 187.333-5 chr1 190145361 190145600 + 1 NA intron (NM_199051, intron 7 of 7) L1M3|LINE|L1 330530 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 273.667-19 chr6 164715068 164715556 + 1 NA Intergenic L1MCa|LINE|L1 106751 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 302.667-3 chr14 59737555 59738023 + 1 NA intron (NM_021136, intron 2 of 8) L1PA11|LINE|L1 -90769 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 175.667-14 chr12 74412859 74413152 + 1 NA Intergenic Intergenic -120374 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 315.667-9 chr14 43808152 43808757 + 1 NA Intergenic L1PA16|LINE|L1 698829 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 255.5 chr1 26170486 26170866 + 1 NA exon (NM_015871, exon 3 of 3) exon (NM_015871, exon 3 of 3) 768 NM_015871 51042 Hs.477273 NM_015871 ENSG00000142684 ZNF593 ZT86 zinc finger protein 593 protein-coding 248.5-7 chr10 55850910 55851368 + 1 NA Intergenic Intergenic -223197 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 200.667-3 chr1 248526197 248526600 + 1 NA Intergenic L1MCb|LINE|L1 4751 NM_001013355 391211 Hs.553784 NM_001013355 ENSG00000188558 OR2G6 - olfactory receptor family 2 subfamily G member 6 protein-coding 204.667-11 chr14 58425692 58426109 + 1 NA intron (NM_001304485, intron 1 of 4) AluSx1|SINE|Alu 1342 NM_001304486 26520 Hs.440525 NM_012460 ENSG00000100575 TIMM9 TIM9|TIM9A translocase of inner mitochondrial membrane 9 protein-coding 266.667-11 chr2 55953978 55954393 + 1 NA Intergenic Intergenic 28891 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 206.333-5 chr1 159629425 159629769 + 1 NA Intergenic Intergenic 41771 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 245.667-25 chr6 47473907 47474197 + 1 NA Intergenic Intergenic -3737 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 341.667-8 chr2 159024496 159025273 + 1 NA intron (NM_001350063, intron 2 of 24) Tigger3c|DNA|TcMar-Tigger 56244 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 188.167-38 chr8 126625507 126625712 + 1 NA Intergenic MIRb|SINE|MIR -67131 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 230.333-13 chr17 7686401 7686772 + 1 NA promoter-TSS (NM_001143991) promoter-TSS (NM_001143991) 515 NM_001143990 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 185.5-39 chr7 53632942 53633258 + 1 NA Intergenic LTR1A2|LTR|ERV1 178831 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 388.167-4 chr20 45138714 45139184 + 1 NA Intergenic Intergenic -14484 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 209.333-12 chr10 90710585 90710908 + 1 NA Intergenic MIR|SINE|MIR 147293 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 184.667-33 chr2 178840135 178840542 + 1 NA intron (NM_173648, intron 22 of 23) intron (NM_173648, intron 22 of 23) -32915 NM_133379 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 200.667-33 chr3 106605328 106605589 + 1 NA Intergenic Intergenic 635180 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 326.833-2 chr1 51660785 51661278 + 1 NA intron (NM_001350209, intron 2 of 23) MIRc|SINE|MIR 43939 NR_036662 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 208.667-25 chr2 99850881 99851483 + 1 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 254401 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 196.167-2 chr10 17323043 17323329 + 1 NA intron (NR_144322, intron 5 of 6) intron (NR_144322, intron 5 of 6) -63750 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 165.5-39 chr7 11351206 11351425 + 1 NA Intergenic L1PA7|LINE|L1 377443 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 357.667-10 chr2 126098866 126099459 + 1 NA Intergenic L1MA3|LINE|L1 18823 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 401.333-2 chr13 41931812 41932287 + 1 NA intron (NM_001009814, intron 2 of 25) L1MB7|LINE|L1 29036 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 176.5-42 chr9 129182662 129182981 + 1 NA Intergenic Intergenic -4560 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5 like protein-coding 163.5-14 chr14 72534744 72535000 + 1 NA intron (NM_001370288, intron 15 of 16) intron (NM_001370288, intron 15 of 16) 18052 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 183.667-51 chr7 11756357 11756555 + 1 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 75742 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 266.667-27 chrX 75747395 75747861 + 1 NA Intergenic Intergenic -4549 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 195.667-25 chr2 164302817 164303134 + 1 NA Intergenic L1MB8|LINE|L1 265520 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 282.667-12 chr13 21108328 21108701 + 1 NA Intergenic AluSq|SINE|Alu -32000 NM_005870 10284 Hs.524899 NM_005870 ENSG00000150459 SAP18 2HOR0202|SAP18P Sin3A associated protein 18 protein-coding 179.667-32 chr4 58977170 58977654 + 1 NA Intergenic Intergenic -6870 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 222.5-20 chr18 32434605 32434963 + 1 NA intron (NM_001242409, intron 1 of 5) L1MC4a|LINE|L1 36098 NM_022751 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 179.333-34 chr3 116333964 116334308 + 1 NA intron (NM_001318915, intron 1 of 8) L1MB4|LINE|L1 -25888 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 194.333-13 chr12 117597074 117597337 + 1 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -235403 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 284.833-4 chr11 63671529 63672067 + 1 NA promoter-TSS (NM_015459) promoter-TSS (NM_015459) 176 NM_001290048 25923 Hs.356719 NM_015459 ENSG00000184743 ATL3 HSN1F atlastin GTPase 3 protein-coding 209.833-13 chr18 44538748 44539438 + 1 NA intron (NR_131768, intron 1 of 4) intron (NR_131768, intron 1 of 4) 7314 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 171.5-2 chr1 222672722 222673245 + 1 NA intron (NM_022831, intron 8 of 9) intron (NM_022831, intron 8 of 9) 28680 NM_001324065 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 175.333-55 chr9 16778559 16778822 + 1 NA intron (NM_017637, intron 1 of 6) MIRb|SINE|MIR 51876 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 270.167-2 chr1 99538111 99538586 + 1 NA intron (NR_031666, intron 3 of 4) LTR44|LTR|ERV1 -50544 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 230.167-16 chr7 54191329 54191729 + 1 NA Intergenic Intergenic -139168 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 269.5-13 chr2 95572021 95572538 + 1 NA Intergenic Intergenic -19722 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 167.333-28 chr2 24494020 24494331 + 1 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) 2298 NM_001362954 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 243.5-8 chr15 70687684 70688159 + 1 NA intron (NM_018003, intron 5 of 18) intron (NM_018003, intron 5 of 18) 14361 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 293.667-24 chr8 50814433 50814803 + 1 NA Intergenic AluSx|SINE|Alu 650487 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 194.333-29 chr4 30389241 30389492 + 1 NA Intergenic Intergenic -331003 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 166.5-42 chr8 52066738 52066950 + 1 NA Intergenic L1PB1|LINE|L1 -127518 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 388.667-4 chr3 94251645 94252143 + 1 NA Intergenic L1MA10|LINE|L1 188833 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 349.5-2 chr13 55571991 55572659 + 1 NA Intergenic MIR3|SINE|MIR 397871 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 190.5-52 chr8 48590166 48590450 + 1 NA intron (NR_105002, intron 2 of 3) intron (NR_105002, intron 2 of 3) -30095 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 320.667-16 chr9 8020625 8021307 + 1 NA Intergenic Intergenic -221188 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 226.667-36 chr7 95490471 95490748 + 1 NA intron (NM_145872, intron 1 of 2) intron (NM_145872, intron 1 of 2) 4666 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 179.667-7 chr12 89949385 89949699 + 1 NA non-coding (NR_135019, exon 3 of 3) non-coding (NR_135019, exon 3 of 3) 1849 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 215.667-8 chr11 66406952 66407328 + 1 NA Intergenic Intergenic -13864 NM_001318804 266743 Hs.256036 NM_178864 ENSG00000174576 NPAS4 Le-PAS|NXF|PASD10|bHLHe79 neuronal PAS domain protein 4 protein-coding 314.167-3 chr10 90148283 90148640 + 1 NA Intergenic Intergenic -191088 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 252.333-9 chr2 50647351 50647943 + 1 NA intron (NM_001330093, intron 4 of 22) L1ME4a|LINE|L1 48615 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 164.5-29 chr2 104312505 104312700 + 1 NA Intergenic Intergenic 95730 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 199.5-31 chr3 33355845 33356101 + 1 NA intron (NR_146129, intron 4 of 15) intron (NR_146129, intron 4 of 15) 78531 NM_001349325 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 218.667-23 chr20 35541960 35542341 + 1 NA promoter-TSS (NM_015966) promoter-TSS (NM_015966) 72 NM_015966 51614 Hs.472558 NM_015966 ENSG00000125991 ERGIC3 C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2 ERGIC and golgi 3 protein-coding 205.333-24 chr2 223951969 223952263 + 1 NA Intergenic LTR33A|LTR|ERVL -5347 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 216.5-48 chr9 120477387 120477675 + 1 NA intron (NR_073558, intron 14 of 37) intron (NR_073558, intron 14 of 37) 102636 NM_018249 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 178.667-12 chr13 34909889 34910240 + 1 NA Intergenic L1MB7|LINE|L1 -32223 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 310.333-7 chr2 69799080 69799500 + 1 NA intron (NM_001320700, intron 3 of 12) LTR19C|LTR|ERV1 -30370 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 289.5-13 chr7 22452178 22452847 + 1 NA intron (NM_001164460, intron 4 of 4) LTR50|LTR|ERVL 47770 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 173.167-41 chr8 115490463 115490916 + 1 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 177324 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 317.333-5 chr14 58656850 58657318 + 1 NA Intergenic Intergenic 18247 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 171.833-28 chr7 74500560 74500940 + 1 NA intron (NM_016328, intron 1 of 26) AluJo|SINE|Alu 46844 NM_016328 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 232.333-27 chrX 77461164 77461596 + 1 NA Intergenic Intergenic 13991 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 216.667-30 chr3 85278161 85278582 + 1 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -107339 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 221.667-25 chr2 111694868 111695242 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 76079 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 207.667-29 chr3 192821124 192821423 + 1 NA intron (NM_178496, intron 1 of 1) MIRb|SINE|MIR -93732 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 210.667-4 chr10 20859892 20860191 + 1 NA intron (NM_006393, intron 7 of 27) intron (NM_006393, intron 7 of 27) 37561 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 189.167-33 chr6 35258479 35258689 + 1 NA Intergenic Intergenic -1151 NM_003427 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 170.5-4 chr1 237108696 237108910 + 1 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 66619 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 246.167-30 chr5 152509101 152509372 + 1 NA Intergenic MIR3|SINE|MIR -103957 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 233.167-25 chr8 100410964 100411462 + 1 NA Intergenic Intergenic 28450 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 195.833-25 chr8 115495724 115495940 + 1 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 172181 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 206.667-45 chr7 21678757 21679121 + 1 NA intron (NM_001277115, intron 30 of 81) L1MA9|LINE|L1 135900 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 278.667-25 chr5 108681343 108681747 + 1 NA Intergenic Intergenic 46716 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 228.333-14 chr16 77131189 77131477 + 1 NA Intergenic AluJr|SINE|Alu -59857 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 223.5-18 chr20 36098916 36099467 + 1 NA intron (NM_001258329, intron 1 of 22) AluSx|SINE|Alu 6481 NM_001258329 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 238.333 chr1 21118156 21118569 + 1 NA intron (NM_001198803, intron 1 of 12) intron (NM_001198803, intron 1 of 12) -6979 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 234.5-12 chr13 83635807 83636193 + 1 NA Intergenic Intergenic 246393 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 168.333-54 chr5 19012085 19012314 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger 874073 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 176.333-23 chr3 98635438 98635840 + 1 NA Intergenic L1ME2z|LINE|L1 -42028 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 167.333-15 chr11 95508984 95509255 + 1 NA Intergenic Intergenic -276644 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 270.667-9 chr17 59070355 59070685 + 1 NA intron (NR_148346, intron 9 of 23) intron (NR_148346, intron 9 of 23) 36360 NM_001005207 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 254.667-34 chr9 97392871 97393195 + 1 NA intron (NR_026847, intron 4 of 5) intron (NR_026847, intron 4 of 5) 3658 NR_026847 286359 Hs.132262 NM_182600 LOC286359 - uncharacterized LOC286359 ncRNA 225.667-35 chr7 94290157 94290574 + 1 NA Intergenic Intergenic 101827 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 276.167-22 chr7 41010747 41011114 + 1 NA Intergenic Intergenic -30991 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 182.5-3 chr10 59992671 59992940 + 1 NA Intergenic AluSc8|SINE|Alu -31892 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 299.667-5 chr2 30383544 30384193 + 1 NA Intergenic Intergenic 37222 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 209.167-5 chr10 57808126 57808693 + 1 NA Intergenic LTR1F|LTR|ERV1 459485 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 275.333-5 chr13 21476792 21477232 + 1 NA Intergenic Intergenic -17642 NM_001286638 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 178.667-35 chr5 8676011 8676340 + 1 NA Intergenic Intergenic -163557 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 311.667-18 chr7 107605550 107606011 + 1 NA intron (NR_163929, intron 6 of 7) intron (NR_163929, intron 6 of 7) 25534 NR_163937 239.667-41 chr8 26372085 26372408 + 1 NA 3' UTR (NM_002717, exon 10 of 10) 3' UTR (NM_002717, exon 10 of 10) 10707 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 170.333-10 chr11 129334182 129334510 + 1 NA Intergenic L1M4|LINE|L1 -41502 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 190.333-42 chrX 7594370 7594608 + 1 NA Intergenic Intergenic -247773 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 199.5-44 chr8 80809706 80809975 + 1 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 64628 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 258.333-10 chr3 23158970 23159378 + 1 NA Intergenic MER1B|DNA|hAT-Charlie 43404 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 282.333-12 chr5 54443012 54443495 + 1 NA Intergenic Intergenic -12446 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 171.167-13 chr15 64200049 64200263 + 1 NA intron (NM_001329605, intron 10 of 12) AluSq2|SINE|Alu -37001 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 257.333-9 chr14 66662360 66662779 + 1 NA intron (NM_001024218, intron 1 of 21) L1PA12|LINE|L1 155162 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 289.333-12 chr14 70575446 70575891 + 1 NA Intergenic Intergenic 25022 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 212.5-16 chr17 34922204 34922552 + 1 NA Intergenic L1ME4a|LINE|L1 39082 NM_001193530 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 281.333-20 chr3 180643859 180644277 + 1 NA intron (NM_181426, intron 12 of 19) L1ME4a|LINE|L1 35421 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 208.833-29 chr8 114979924 114980132 + 1 NA Intergenic Intergenic 687985 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 248.667-6 chr10 74417563 74417900 + 1 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 111593 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 165.667-24 chr15 71722654 71722843 + 1 NA intron (NM_001286429, intron 2 of 11) L1ME4b|LINE|L1 -31209 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 184.5-34 chr3 109931980 109932234 + 1 NA Intergenic L1ME4c|LINE|L1 329279 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 188.5-41 chr6 144830544 144830804 + 1 NA intron (NM_007124, intron 68 of 73) MER30|DNA|hAT-Charlie 425019 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 205.167-22 chr4 33480910 33481115 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity 558881 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 189.667-34 chr3 170223302 170223636 + 1 NA intron (NM_002740, intron 1 of 17) intron (NM_002740, intron 1 of 17) 1045 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 221.333-19 chr4 4206835 4207147 + 1 NA intron (NM_177998, intron 2 of 5) MIRb|SINE|MIR 19903 NM_177998 133060 Hs.534544 NM_177998 ENSG00000163982 OTOP1 - otopetrin 1 protein-coding 245.667-24 chr5 120587390 120587683 + 1 NA intron (NM_001308088, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 56072 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 271.667-4 chr10 51651093 51651384 + 1 NA intron (NM_001098512, intron 3 of 17) L2c|LINE|L2 48357 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 206.333-19 chr2 99328881 99329261 + 1 NA intron (NM_005783, intron 2 of 4) intron (NM_005783, intron 2 of 4) 7262 NM_005783 10190 Hs.536122 NM_005783 ENSG00000115514 TXNDC9 APACD|PHLP3 thioredoxin domain containing 9 protein-coding 217.333-26 chr3 158802007 158802344 + 1 NA exon (NM_001167903, exon 1 of 15) exon (NM_001167903, exon 1 of 15) 121 NM_022736 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 227.167-6 chr14 38947912 38948550 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -31349 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 277.667 chr1 45569184 45569546 + 1 NA intron (NM_001202414, intron 10 of 10) intron (NM_001202414, intron 10 of 10) -14623 NM_001195193 4678 Hs.319334 NM_002482 ENSG00000132780 NASP FLB7527|HMDRA1|PRO1999 nuclear autoantigenic sperm protein protein-coding 189.667-36 chr3 186849325 186849756 + 1 NA intron (NM_001177800, intron 2 of 3) intron (NM_001177800, intron 2 of 3) 6830 NM_004797 9370 Hs.80485 NM_004797 ENSG00000181092 ADIPOQ ACDC|ACRP30|ADIPQTL1|ADPN|APM-1|APM1|GBP28 adiponectin, C1Q and collagen domain containing protein-coding 188.5-39 chr6 47627397 47627697 + 1 NA TTS (NM_012120) TTS (NM_012120) -28925 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 221.667-37 chr5 30302193 30302527 + 1 NA Intergenic L1MC4|LINE|L1 421800 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 299.833-3 chr1 201118529 201118916 + 1 NA Intergenic Intergenic -3350 NM_001270601 647219 Hs.143949 NM_001270601 ENSG00000232237 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 252.833-15 chr5 113599021 113599572 + 1 NA Intergenic Intergenic 85602 NM_001345976 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 267.5-11 chr14 36497464 36497826 + 1 NA intron (NR_161365, intron 1 of 4) intron (NR_161365, intron 1 of 4) 15890 NR_161363 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 373.833-5 chr8 53843006 53843730 + 1 NA promoter-TSS (NM_015941) promoter-TSS (NM_015941) -57 NM_213619 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 218.833-15 chr21 32321252 32321669 + 1 NA intron (NM_014825, intron 34 of 38) intron (NM_014825, intron 34 of 38) 29647 NM_178817 56246 Hs.584940 NM_178817 ENSG00000170262 MRAP B27|C21orf61|FALP|FGD2|GCCD2 melanocortin 2 receptor accessory protein protein-coding 180.333-11 chr11 111000893 111001378 + 1 NA Intergenic MER102b|DNA|hAT-Charlie 96183 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 236.667-20 chr3 185335603 185335953 + 1 NA intron (NM_001242317, intron 2 of 12) MER2|DNA|TcMar-Tigger -27358 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 178.667-41 chr7 52621873 52622192 + 1 NA Intergenic Intergenic -413601 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 186.667 chr1 23225046 23225375 + 1 NA Intergenic Intergenic -30481 NM_000864 3352 Hs.121482 NM_000864 ENSG00000179546 HTR1D 5-HT1D|HT1DA|HTR1DA|HTRL|RDC4 5-hydroxytryptamine receptor 1D protein-coding 329.833-6 chr4 37389922 37390587 + 1 NA intron (NM_001144990, intron 3 of 6) (GTACAT)n|Simple_repeat|Simple_repeat -63671 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 192.333-6 chr10 123995667 123996032 + 1 NA Intergenic Intergenic 96557 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 448.667-2 chr12 101917478 101918152 + 1 NA intron (NM_018370, intron 5 of 6) intron (NM_018370, intron 5 of 6) 40235 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 213.833-20 chr7 55060706 55061163 + 1 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 41902 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 170.5-22 chr2 84514995 84515254 + 1 NA Intergenic Intergenic -1331 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 206.5-41 chr3 182832257 182832597 + 1 NA intron (NM_014616, intron 4 of 29) intron (NM_014616, intron 4 of 29) 38923 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 188.833-11 chr14 61974129 61974421 + 1 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 46580 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 209.667-31 chr4 33153929 33154277 + 1 NA Intergenic L1MA1|LINE|L1 803065 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 177.5-50 chr8 141725433 141725722 + 1 NA Intergenic Intergenic 60736 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 173.333-6 chr12 50542391 50542605 + 1 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 37513 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 189.167-5 chr11 20333013 20333219 + 1 NA Intergenic Intergenic -30569 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 237.667-22 chr2 208117463 208118027 + 1 NA Intergenic LTR2|LTR|ERV1 -1384 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 227.333-21 chr2 208571638 208571873 + 1 NA intron (NR_136588, intron 1 of 5) MER91B|DNA|hAT-Tip100 29113 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 209.5-4 chr1 236463278 236463620 + 1 NA intron (NM_080738, intron 4 of 5) AluSx|SINE|Alu -54765 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 219.833-16 chr2 102228028 102228492 + 1 NA intron (NM_001351447, intron 7 of 9) intron (NM_001351447, intron 7 of 9) 40946 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 224.5-19 chr2 35887112 35887427 + 1 NA Intergenic LTR9D|LTR|ERV1 415864 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 207.667-32 chr4 105638248 105638471 + 1 NA intron (NM_001242729, intron 5 of 13) intron (NM_001242729, intron 5 of 13) 70330 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 173.5-6 chr1 229519682 229519988 + 1 NA intron (NM_012089, intron 11 of 12) (AGTA)n|Simple_repeat|Simple_repeat 11405 NR_110630 101927478 Hs.229275 NR_110630 LOC101927478 - uncharacterized LOC101927478 ncRNA 179.5-9 chr12 2329459 2329655 + 1 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 59781 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 183.167-42 chr8 144758034 144758315 + 1 NA Intergenic LTR75B|LTR|ERVL -2643 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 174.667-9 chr10 26316478 26316769 + 1 NA Intergenic AluJb|SINE|Alu 99849 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 266.5-6 chr1 171519966 171520456 + 1 NA intron (NM_015172, intron 6 of 33) AluSx|SINE|Alu 34681 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 167.167 chr1 22225347 22225581 + 1 NA Intergenic L1ME3A|LINE|L1 -40775 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 173.833-17 chr14 51893196 51893771 + 1 NA intron (NM_001243773, intron 2 of 3) L1ME4b|LINE|L1 25088 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 341.167-9 chr2 96260381 96260976 + 1 NA intron (NM_017849, intron 2 of 3) intron (NM_017849, intron 2 of 3) 5319 NM_001193304 55654 Hs.164303 NM_017849 ENSG00000135956 TMEM127 - transmembrane protein 127 protein-coding 260.667-38 chr4 88612408 88612927 + 1 NA intron (NM_001318505, intron 3 of 8) intron (NM_001318505, intron 3 of 8) 20187 NM_014606 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 175.5-27 chr19 45596020 45596283 + 1 NA intron (NM_005282, intron 1 of 1) L2a|LINE|L2 6061 NM_005282 2828 Hs.17170 NM_005282 ENSG00000177464 GPR4 - G protein-coupled receptor 4 protein-coding 284.5-12 chr20 18507371 18507800 + 1 NA promoter-TSS (NM_001172746) promoter-TSS (NM_001172746) 103 NM_032986 10483 Hs.369373 NM_006363 ENSG00000101310 SEC23B CDA-II|CDAII|CDAN2|CWS7|HEMPAS|hSec23B SEC23 homolog B, coat complex II component protein-coding 314.5-14 chr4 62578642 62579136 + 1 NA Intergenic L1ME3|LINE|L1 -417124 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 218.833-17 chr4 31836746 31837155 + 1 NA Intergenic Intergenic -160429 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 190.5-27 chr20 35194284 35194565 + 1 NA intron (NM_001355008, intron 4 of 14) L2a|LINE|L2 22352 NM_006404 10544 Hs.647450 NM_006404 ENSG00000101000 PROCR CCCA|CCD41|EPCR protein C receptor protein-coding 214.333-15 chr17 44902899 44903187 + 1 NA promoter-TSS (NM_001258400) promoter-TSS (NM_001258400) -787 NM_001258400 100528020 NM_001258400 ENSG00000214447 FAM187A - family with sequence similarity 187 member A protein-coding 298.333-11 chr2 36561252 36561698 + 1 NA intron (NM_001042548, intron 5 of 8) intron (NM_001042548, intron 5 of 8) 36693 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 313.333-9 chr18 1760714 1761057 + 1 NA Intergenic L1ME2|LINE|L1 -401256 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 294.5 chr1 91059547 91059946 + 1 NA Intergenic Intergenic -37491 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 172.5-51 chr7 119025563 119025828 + 1 NA Intergenic Intergenic 800991 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 395.167-4 chr17 8376512 8377262 + 1 NA promoter-TSS (NM_001304947) promoter-TSS (NM_001304947) -183 NM_001304947 124751 Hs.304604 NM_213597 ENSG00000184619 KRBA2 - KRAB-A domain containing 2 protein-coding 169.833-20 chr2 118739335 118739553 + 1 NA Intergenic Tigger19a|DNA|TcMar-Tigger 108739 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 294.5-23 chr5 150800573 150801102 + 1 NA Intergenic AluYh3|SINE|Alu 22891 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 166.333-18 chr14 65961039 65961454 + 1 NA Intergenic Intergenic 490144 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 215.5-22 chr6 138554510 138554854 + 1 NA intron (NM_020464, intron 1 of 6) intron (NM_020464, intron 1 of 6) 17887 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 232.167-17 chr5 122069962 122070468 + 1 NA intron (NM_001178102, intron 4 of 5) intron (NM_001178102, intron 4 of 5) 6959 NM_001317073 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 256.333-23 chr7 144855072 144855488 + 1 NA Intergenic Intergenic -19227 NM_001350886 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 329.5-5 chr14 67581082 67581601 + 1 NA intron (NM_020715, intron 23 of 28) AluJb|SINE|Alu 18927 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 344.833-3 chr11 88535647 88536423 + 1 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 31459 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 215.667-43 chr8 80622145 80622615 + 1 NA Intergenic Intergenic 136154 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 179.5-27 chr21 24892425 24892658 + 1 NA intron (NR_046198, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 51991 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 229.333-34 chr7 8445742 8446078 + 1 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 12301 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 173.667-4 chr10 25714906 25715174 + 1 NA intron (NR_108067, intron 3 of 4) L1M5|LINE|L1 63328 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 266.333-3 chr1 173178373 173178930 + 1 NA Intergenic HAL1M8|LINE|L1 26881 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 233.667-6 chr11 10797669 10797915 + 1 NA 3' UTR (NM_001418, exon 22 of 22) 3' UTR (NM_001418, exon 22 of 22) 3816 NR_004403 692223 Hs.723086 NR_004403 ENSG00000238622 SNORD97 U97 small nucleolar RNA, C/D box 97 snoRNA 297.333-22 chr9 20291907 20292234 + 1 NA Intergenic Intergenic 119168 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 172.167-16 chr22 21864059 21864336 + 1 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 3483 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 266.833-14 chr3 123567014 123567306 + 1 NA intron (NM_001329784, intron 3 of 8) intron (NM_001329784, intron 3 of 8) 17457 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 182.667-42 chr6 40676450 40676678 + 1 NA Intergenic Intergenic -89200 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 296.5-11 chr14 21218528 21219105 + 1 NA intron (NM_031314, intron 5 of 8) intron (NM_031314, intron 5 of 8) -11916 NR_038971 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 416.167-2 chr2 219560214 219560780 + 1 NA intron (NM_001173431, intron 8 of 13) intron (NM_001173431, intron 8 of 13) 11042 NM_001173431 23363 Hs.526594 NM_015311 ENSG00000124006 OBSL1 - obscurin like 1 protein-coding 255.5-12 chr14 24460992 24461352 + 1 NA intron (NR_110032, intron 2 of 2) L2a|LINE|L2 18219 NR_110032 101927045 Hs.637772 NR_110032 LOC101927045 - uncharacterized LOC101927045 ncRNA 214.167-26 chr5 156374497 156375068 + 1 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 47618 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 208.5-33 chr4 8607514 8607760 + 1 NA intron (NM_001014447, intron 7 of 10) intron (NM_001014447, intron 7 of 10) 14872 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 173.5-2 chr1 183637895 183638189 + 1 NA intron (NM_001297670, intron 1 of 17) intron (NM_001297670, intron 1 of 17) 1933 NM_001297670 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 189.667-6 chr10 39104060 39104346 + 1 NA Intergenic ALR/Alpha|Satellite|centr 407607 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 180.333-38 chr3 25897246 25897454 + 1 NA Intergenic MLT1N2|LTR|ERVL-MaLR -23655 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 283.5-12 chr5 62048320 62048890 + 1 NA Intergenic L1PA15|LINE|L1 -257557 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 242.333-12 chr17 55926873 55927371 + 1 NA Intergenic MIR|SINE|MIR 176017 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 201.5-17 chr16 88795717 88796046 + 1 NA Intergenic AluSx|SINE|Alu -7908 NM_030928 81620 Hs.122908 NM_030928 ENSG00000167513 CDT1 DUP|RIS2 chromatin licensing and DNA replication factor 1 protein-coding 242.667-27 chr8 115218738 115219057 + 1 NA Intergenic Intergenic 449116 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 277.333-8 chr11 73194233 73194830 + 1 NA Intergenic MIRb|SINE|MIR -23750 NM_002564 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 165.667-27 chr18 50267805 50267987 + 1 NA TTS (NM_001204136) TTS (NM_001204136) -1401 NM_145020 220136 Hs.658630 NM_145020 ENSG00000172361 CFAP53 CCDC11|HTX6 cilia and flagella associated protein 53 protein-coding 175.333-25 chr2 36000962 36001282 + 1 NA Intergenic Intergenic 354448 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 174.167-29 chr22 43089108 43089561 + 1 NA promoter-TSS (NM_012263) promoter-TSS (NM_012263) 57 NM_012263 25809 Hs.660298 NM_012263 ENSG00000100271 TTLL1 C22orf7|HS323M22B tubulin tyrosine ligase like 1 protein-coding 307.167-25 chr9 33859085 33859490 + 1 NA intron (NM_017811, intron 1 of 4) intron (NM_017811, intron 1 of 4) 42127 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 178.333-33 chr6 108523467 108523701 + 1 NA non-coding (NR_136553, exon 9 of 9) non-coding (NR_136553, exon 9 of 9) -36241 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 330.5-2 chr10 100671146 100671579 + 1 NA Intergenic CpG -64034 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 198.5-29 chr22 33194570 33194916 + 1 NA Intergenic MIR3|SINE|MIR 86214 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 172.5-49 chr6 80093830 80094063 + 1 NA Intergenic MIRb|SINE|MIR -12664 NM_000056 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 209.5-3 chr1 211445289 211445613 + 1 NA Intergenic L1MB4|LINE|L1 47466 NM_183059 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 291.167-12 chr3 158799655 158799983 + 1 NA Intergenic MER33|DNA|hAT-Charlie -2235 NR_110328 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 280.833-20 chrX 101394374 101394736 + 1 NA intron (NM_001199974, intron 3 of 3) intron (NM_001199974, intron 3 of 3) 3544 NM_001199974 100529097 Hs.432485 NM_001199973 RPL36A-HNRNPH2 - RPL36A-HNRNPH2 readthrough protein-coding 213.333-5 chr11 47784007 47784460 + 1 NA intron (NM_015231, intron 33 of 35) MER5A|DNA|hAT-Charlie -16892 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 315.667-12 chr6 5866653 5867130 + 1 NA Intergenic CR1-3_Croc|LINE|CR1 137153 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 193.333-9 chr10 110217096 110217348 + 1 NA intron (NM_001008541, intron 1 of 4) intron (NM_001008541, intron 1 of 4) 6991 NM_001008541 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 207.833-2 chr11 65181106 65181387 + 1 NA promoter-TSS (NM_005186) promoter-TSS (NM_005186) -127 NM_001198868 823 Hs.502842 NM_005186 ENSG00000014216 CAPN1 CANP|CANP1|CANPL1|SPG76|muCANP|muCL calpain 1 protein-coding 230.333-25 chr3 177357179 177357493 + 1 NA Intergenic Intergenic 62894 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 389.5-9 chr7 122142587 122143007 + 1 NA intron (NM_005763, intron 1 of 23) intron (NM_005763, intron 1 of 23) 1452 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 173.333-33 chr8 54866808 54867201 + 1 NA Intergenic L2c|LINE|L2 -235024 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 212.667-28 chr22 25913209 25913502 + 1 NA intron (NM_001318245, intron 33 of 43) L1ME3Cz|LINE|L1 171167 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 225.167-10 chr14 64228775 64229193 + 1 NA intron (NM_001271876, intron 7 of 7) intron (NM_001271876, intron 7 of 7) 13030 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 311.167-11 chr5 24991703 24992142 + 1 NA Intergenic AluSq2|SINE|Alu -151339 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 204.333 chr1 27462176 27462438 + 1 NA intron (NM_006990, intron 1 of 8) L1MC4|LINE|L1 27860 NM_006990 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 178.667-43 chr8 119422344 119422595 + 1 NA intron (NM_002514, intron 4 of 4) intron (NM_002514, intron 4 of 4) 6023 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 169.5-14 chr15 25383427 25383600 + 1 NA intron (NM_001354546, intron 1 of 9) AluSq2|SINE|Alu 54716 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 259.333-20 chr2 26245313 26245696 + 1 NA promoter-TSS (NM_000182) promoter-TSS (NM_000182) 565 NM_000183 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta protein-coding 324.667-13 chr2 59626124 59626611 + 1 NA Intergenic Intergenic 408659 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 289.667-8 chr16 3151903 3152365 + 1 NA Intergenic Intergenic 7843 NR_132322 197350 Hs.434132 NR_132322 ENSG00000228146 CASP16P CASP16 caspase 16, pseudogene pseudo 176.333-30 chr6 4312883 4313059 + 1 NA Intergenic L1M3f|LINE|L1 -122942 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 219.667-10 chr16 86999781 87000073 + 1 NA Intergenic Intergenic -57857 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 234.667-16 chr18 4524823 4525189 + 1 NA Intergenic L1MA2|LINE|L1 -69699 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 255.167-5 chr1 207454046 207454454 + 1 NA promoter-TSS (NM_001877) promoter-TSS (NM_001877) -50 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 269.333-14 chr20 4172317 4172678 + 1 NA intron (NM_001270691, intron 1 of 7) CpG -20593 NR_033917 728228 Hs.636379 NR_033917 ENSG00000230176 LINC01433 - long intergenic non-protein coding RNA 1433 ncRNA 287.667-26 chr7 124129149 124129497 + 1 NA Intergenic Intergenic -96256 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 316.5-22 chr4 121851823 121852418 + 1 NA intron (NM_176824, intron 8 of 18) intron (NM_176824, intron 8 of 18) 18354 NM_176824 55212 Hs.591694 NM_018190 ENSG00000138686 BBS7 BBS2L1 Bardet-Biedl syndrome 7 protein-coding 295.333-25 chrX 101990548 101990844 + 1 NA Intergenic Tigger3c|DNA|TcMar-Tigger -58669 NM_001282401 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 284.5-4 chr11 46114980 46115488 + 1 NA intron (NR_147890, intron 1 of 18) intron (NR_147890, intron 1 of 18) 5585 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 274.333-7 chr11 21518609 21519050 + 1 NA intron (NM_201551, intron 15 of 18) MIRb|SINE|MIR -674256 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 175.333-35 chr20 50420746 50421124 + 1 NA Intergenic MIR3|SINE|MIR -89386 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 323.667 chr1 11273253 11273844 + 1 NA exon (NM_013319, exon 1 of 2) exon (NM_013319, exon 1 of 2) 350 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 163.333-52 chr6 130738999 130739256 + 1 NA Intergenic L1MA4|LINE|L1 -88278 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 317.833-16 chrX 103155392 103155737 + 1 NA Intergenic L1MB2|LINE|L1 -59528 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 184.167-28 chr4 37561932 37562133 + 1 NA intron (NM_001104629, intron 2 of 3) Tigger17a|DNA|TcMar-Tigger -22201 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 205.667 chr1 111441803 111442155 + 1 NA intron (NR_133654, intron 8 of 8) intron (NR_133654, intron 8 of 8) 7277 NM_001317063 79084 Hs.204773 NM_024102 ENSG00000116455 WDR77 HKMT1069|MEP-50|MEP50|Nbla10071|p44|p44/Mep50 WD repeat domain 77 protein-coding 210.833-12 chr15 83446974 83447294 + 1 NA promoter-TSS (NR_125370) promoter-TSS (NR_125370) -94 NM_001324182 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 189.5-26 chr3 115927 116243 + 1 NA Intergenic L3|LINE|CR1 -80511 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 237.833-15 chr4 95557281 95557659 + 1 NA Intergenic L2c|LINE|L2 -8497 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 175.5-43 chr5 125905093 125905284 + 1 NA Intergenic Intergenic -274389 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 228.667-36 chr5 20972443 20972776 + 1 NA Intergenic Intergenic -357074 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 455.5-4 chr8 129508628 129509237 + 1 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -24790 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 211.5-12 chr12 55279694 55280244 + 1 NA Intergenic L1M5|LINE|L1 15263 NM_001005493 283365 Hs.554555 NM_001005493 ENSG00000188324 OR6C6 - olfactory receptor family 6 subfamily C member 6 protein-coding 170.167-37 chr5 136058568 136058777 + 1 NA intron (NM_000358, intron 12 of 16) intron (NM_000358, intron 12 of 16) 21926 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 175.333-15 chr14 69803659 69803889 + 1 NA Intergenic L1MC4|LINE|L1 -6533 NM_003049 6554 Hs.952 NM_003049 ENSG00000100652 SLC10A1 NTCP solute carrier family 10 member 1 protein-coding 463.167-6 chrX 131767934 131768666 + 1 NA intron (NR_026975, intron 7 of 12) intron (NR_026975, intron 7 of 12) 62343 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 238.833 chr1 8563093 8563338 + 1 NA intron (NM_001042681, intron 4 of 22) intron (NM_001042681, intron 4 of 22) -68302 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 186.167-22 chr6 48611484 48611870 + 1 NA Intergenic Intergenic -542988 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 231.333-25 chr4 4498714 4499119 + 1 NA intron (NM_001346282, intron 1 of 10) intron (NM_001346282, intron 1 of 10) -17216 NR_126434 104472519 Hs.691848 NR_126434 ENSG00000248221 STX18-IT1 - STX18 intronic transcript 1 ncRNA 227.5-34 chr7 83324029 83324482 + 1 NA Intergenic LTR33|LTR|ERVL -161371 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 308.333-6 chr17 55841289 55841981 + 1 NA Intergenic Intergenic 90530 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 254.5-19 chr19 42241819 42242159 + 1 NA intron (NM_019884, intron 1 of 10) intron (NM_019884, intron 1 of 10) 613 NM_019884 2931 Hs.466828 NM_019884 ENSG00000105723 GSK3A - glycogen synthase kinase 3 alpha protein-coding 190.333 chr1 34865934 34866294 + 1 NA exon (NM_001080418, exon 12 of 12) exon (NM_001080418, exon 12 of 12) -6365 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 217.833-11 chr16 77103846 77104320 + 1 NA Intergenic Intergenic -87107 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 222.667-34 chr5 57812759 57813126 + 1 NA Intergenic Intergenic 86220 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 190.333-7 chr11 43283786 43284234 + 1 NA Intergenic AluY|SINE|Alu -14641 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 248.333-8 chr12 56189676 56190222 + 1 NA promoter-TSS (NM_003075) promoter-TSS (NM_003075) -466 NM_003075 6601 Hs.236030 NM_003075 ENSG00000139613 SMARCC2 BAF170|CRACC2|CSS8|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 protein-coding 255.167-11 chr11 47407828 47408150 + 1 NA promoter-TSS (NM_152264) promoter-TSS (NM_152264) -506 NM_152264 91252 Hs.523664 NM_152264 ENSG00000165915 SLC39A13 EDSSPD3|LZT-Hs9|SCDEDS|ZIP13 solute carrier family 39 member 13 protein-coding 180.333-46 chr6 34158146 34158472 + 1 NA Intergenic AluJb|SINE|Alu -2687 NM_001256809 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 281.667-15 chr21 17527348 17527961 + 1 NA intron (NM_001207066, intron 1 of 7) intron (NM_001207066, intron 1 of 7) 14611 NM_001338 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 174.667-49 chr6 164682772 164683020 + 1 NA Intergenic L1ME2z|LINE|L1 139167 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 179.667-25 chr2 201571324 201571648 + 1 NA intron (NM_001168221, intron 8 of 15) intron (NM_001168221, intron 8 of 15) 47692 NM_001168217 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 201.833-7 chr12 66345478 66345704 + 1 NA Intergenic Intergenic 43046 NM_033647 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 281.833-3 chr1 233097849 233098375 + 1 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 147270 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 185.333-31 chr22 45831454 45831755 + 1 NA intron (NM_013236, intron 10 of 11) MIR|SINE|MIR 71080 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 377.667-5 chr2 219274567 219275244 + 1 NA Intergenic Intergenic -4461 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 203.167-32 chr7 103559851 103560259 + 1 NA intron (NM_005045, intron 36 of 64) intron (NM_005045, intron 36 of 64) -113848 NM_206885 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 335.667-5 chr13 37602418 37602930 + 1 NA Intergenic Intergenic -3830 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 282.333-4 chr12 41439277 41439593 + 1 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 1696 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 184.333-8 chr12 20631885 20632100 + 1 NA intron (NM_000921, intron 6 of 15) intron (NM_000921, intron 6 of 15) 60128 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 273.833-8 chr5 63816797 63817164 + 1 NA Intergenic Intergenic 145312 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 195.667-18 chr17 4583922 4584226 + 1 NA promoter-TSS (NM_198501) promoter-TSS (NM_198501) 67 NM_198501 342527 Hs.441709 NM_198501 ENSG00000188176 SMTNL2 - smoothelin like 2 protein-coding 512.833-6 chr8 135756558 135757725 + 1 NA Intergenic Intergenic 299685 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 262.667-16 chr15 70589288 70589632 + 1 NA Intergenic LTR85a|LTR|Gypsy? -2854 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 213.667-39 chr5 37723350 37723590 + 1 NA intron (NM_001345998, intron 15 of 17) intron (NM_001345998, intron 15 of 17) 111352 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 226.667-34 chr5 172413109 172413422 + 1 NA intron (NM_001017995, intron 2 of 12) intron (NM_001017995, intron 2 of 12) 41258 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 248.333-18 chr20 47280573 47280983 + 1 NA intron (NM_001281774, intron 11 of 23) intron (NM_001281774, intron 11 of 23) -37724 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 179.333-28 chr2 170932818 170933218 + 1 NA intron (NM_015530, intron 1 of 9) intron (NM_015530, intron 1 of 9) 3765 NM_015530 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 174.5-17 chr2 48655237 48655635 + 1 NA intron (NM_172311, intron 8 of 10) AluJr|SINE|Alu 37580 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 167.667-48 chr8 62023773 62023940 + 1 NA Intergenic Intergenic 134017 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 169.667-36 chr2 79547949 79548363 + 1 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 24973 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 167.667-13 chr17 70798566 70798950 + 1 NA Intergenic Intergenic 403421 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 184.333-37 chr7 55107520 55107768 + 1 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -2195 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 256.167-6 chr10 18713162 18713648 + 1 NA Intergenic Intergenic 53974 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 181.667-14 chr14 69879337 69879895 + 1 NA 5' UTR (NM_022137, exon 1 of 12) 5' UTR (NM_022137, exon 1 of 12) 200 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 239.667-19 chr17 40317311 40317764 + 1 NA promoter-TSS (NM_001145302) promoter-TSS (NM_001145302) -708 NM_001145301 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 200.333-45 chrX 24498792 24499243 + 1 NA intron (NM_001142386, intron 3 of 11) intron (NM_001142386, intron 3 of 11) 33731 NM_001142386 5165 Hs.296031 NM_005391 ENSG00000067992 PDK3 CMTX6|GS1-358P8.4 pyruvate dehydrogenase kinase 3 protein-coding 231.5-22 chr2 188983370 188983643 + 1 NA intron (NM_000090, intron 1 of 50) intron (NM_000090, intron 1 of 50) -5345 NR_039947 100616324 NR_039947 ENSG00000283238 MIR1245B - microRNA 1245b ncRNA 225.5-15 chr2 150273639 150274069 + 1 NA Intergenic MSTC|LTR|ERVL-MaLR -16847 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 274.667-19 chr4 92892938 92893242 + 1 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 588691 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 175.5-14 chr12 120626039 120626261 + 1 NA Intergenic Intergenic -14469 NM_001033677 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 233.833-19 chr6 161960550 161960952 + 1 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 489774 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 203.333-58 chr8 72919289 72919659 + 1 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -89390 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 224.5-37 chr6 138474838 138475225 + 1 NA intron (NM_020464, intron 2 of 6) AluSp|SINE|Alu 24463 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 249.167-2 chr12 26238591 26239248 + 1 NA Intergenic MamTip2|DNA|hAT-Tip100 43346 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 185.333-34 chr3 138202926 138203117 + 1 NA intron (NM_001363942, intron 2 of 21) intron (NM_001363942, intron 2 of 21) 15490 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 296.333-2 chr11 5124978 5125300 + 1 NA Intergenic L1PA15|LINE|L1 7503 NM_001005160 390054 Hs.546593 NM_001005160 ENSG00000171944 OR52A5 OR11-33 olfactory receptor family 52 subfamily A member 5 protein-coding 185.333-28 chr2 229911012 229911209 + 1 NA intron (NM_001348325, intron 1 of 42) intron (NM_001348325, intron 1 of 42) 10569 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 278.167-2 chr1 28545008 28545507 + 1 NA Intergenic LTR13|LTR|ERVK -7760 NR_003109 54952 Hs.533626 NM_017846 ENSG00000180098 TRNAU1AP PRO1902|SECP43|TRSPAP1 tRNA selenocysteine 1 associated protein 1 protein-coding 215.5-19 chr5 147513309 147513628 + 1 NA Intergenic Intergenic -3400 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 281.333-16 chr19 11560161 11560637 + 1 NA Intergenic AluSz|SINE|Alu -1163 NM_032377 84337 Hs.631633 NM_032377 ENSG00000130165 ELOF1 ELF1 elongation factor 1 homolog protein-coding 336.5-3 chr10 64116022 64116541 + 1 NA Intergenic Intergenic -594391 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 326.333 chr11 64250912 64251396 + 1 NA promoter-TSS (NM_000932) promoter-TSS (NM_000932) -376 NM_001316314 5331 Hs.523761 NM_000932 ENSG00000149782 PLCB3 - phospholipase C beta 3 protein-coding 177.833-27 chr22 29410211 29410483 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21764 NM_001127 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 239.167-17 chr2 17312659 17313084 + 1 NA Intergenic Intergenic 205569 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 186.667-45 chr3 102864004 102864419 + 1 NA Intergenic Intergenic 429196 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 299.5-18 chr6 125735064 125735372 + 1 NA Intergenic Intergenic -14414 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 245.667-21 chr5 73901706 73902014 + 1 NA intron (NM_001177693, intron 31 of 35) intron (NM_001177693, intron 31 of 35) 88314 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 181.333-29 chr3 124995363 124995549 + 1 NA intron (NM_020733, intron 12 of 16) (TG)n|Simple_repeat|Simple_repeat 60541 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 266.333-10 chr13 113906211 113906547 + 1 NA intron (NM_001278674, intron 3 of 7) intron (NM_001278674, intron 3 of 7) 11276 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 216.5-46 chr8 123272120 123272545 + 1 NA intron (NR_037873, intron 1 of 3) intron (NR_037873, intron 1 of 3) 1954 NR_037874 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 229.5 chr1 10625814 10626125 + 1 NA intron (NM_004565, intron 7 of 8) intron (NM_004565, intron 7 of 8) 151019 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 225.333-10 chr11 11705869 11706238 + 1 NA Intergenic MER5B|DNA|hAT-Charlie -49331 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 291.333-16 chr6 1381565 1382079 + 1 NA Intergenic CpG -7754 NM_001452 2295 Hs.484423 NM_001452 ENSG00000137273 FOXF2 FKHL6|FREAC-2|FREAC2 forkhead box F2 protein-coding 340.167 chr11 122505831 122506395 + 1 NA Intergenic Intergenic -83242 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 181.167-21 chr2 223038922 223039418 + 1 NA Intergenic L1M4|LINE|L1 -12760 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 216.333-21 chr17 78283541 78283956 + 1 NA Intergenic Intergenic -5256 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 193.333-5 chr10 83962857 83963244 + 1 NA Intergenic L2a|LINE|L2 -176459 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 318.667-2 chr1 187126871 187127384 + 1 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 34285 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 332.333-12 chr6 102849624 102850136 + 1 NA Intergenic Intergenic 1450895 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 202.167-20 chr19 46703076 46703440 + 1 NA intron (NM_016457, intron 5 of 17) intron (NM_016457, intron 5 of 17) 6096 NR_036157 100422913 NR_036157 ENSG00000211513 MIR320E mir-320e microRNA 320e ncRNA 521.667-2 chr4 31971504 31972427 + 1 NA Intergenic Intergenic -25414 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 269.5-10 chr14 59919780 59920126 + 1 NA intron (NR_075071, intron 1 of 32) CpG 240 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 175.5-20 chr14 28656289 28656550 + 1 NA Intergenic Intergenic 108900 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 293.667-16 chr3 75177213 75177670 + 1 NA Intergenic L2a|LINE|L2 -37035 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 239.5-3 chr10 62695187 62695721 + 1 NA Intergenic Intergenic -109266 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 254.333-33 chr8 79991587 79991887 + 1 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 38522 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 217.333-14 chr17 80618998 80619447 + 1 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 74384 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 240.667-12 chr12 129914736 129915205 + 1 NA Intergenic AluSz6|SINE|Alu -10945 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 284.5-22 chr7 81717793 81718267 + 1 NA intron (NM_001010932, intron 10 of 17) intron (NM_001010932, intron 10 of 17) -26624 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 203.667-52 chr8 29549616 29549908 + 1 NA Intergenic MIR|SINE|MIR 198347 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 221.667-27 chr2 224582812 224583194 + 1 NA intron (NM_003590, intron 1 of 15) intron (NM_003590, intron 1 of 15) 2360 NM_003590 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 263.333-6 chr13 102015759 102016307 + 1 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) 29971 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 258.667-17 chr2 139942297 139942781 + 1 NA Intergenic Intergenic 644146 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 210.667-55 chr9 11104603 11104936 + 1 NA Intergenic LTR49-int|LTR|ERV1 491563 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 239.667-27 chr22 49319719 49320064 + 1 NA Intergenic L1MB8|LINE|L1 223575 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 222.5-39 chrX 47384737 47385067 + 1 NA intron (NM_003446, intron 1 of 3) MER21-int|LTR|ERVL -3748 NR_003710 100124540 Hs.693443 NR_003710 ENSG00000221459 SNORA11C - small nucleolar RNA, H/ACA box 11C snoRNA 236.5-13 chr16 70537203 70537605 + 1 NA promoter-TSS (NR_003079) promoter-TSS (NR_003079) -601 NR_003079 692214 NR_003079 ENSG00000221066 SNORD111 HBII-82 small nucleolar RNA, C/D box 111 snoRNA 264.333-22 chr4 38971180 38971652 + 1 NA intron (NM_024943, intron 5 of 6) intron (NM_024943, intron 5 of 6) 60993 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 204.5-2 chr1 218460619 218460842 + 1 NA intron (NR_031644, intron 2 of 6) L2c|LINE|L2 18104 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 207.333-13 chr13 19618907 19619141 + 1 NA Intergenic Intergenic -14635 NM_017520 54737 Hs.269654 NM_017520 ENSG00000196199 MPHOSPH8 HSMPP8|TWA3|mpp8 M-phase phosphoprotein 8 protein-coding 207.5-17 chr17 61165098 61165320 + 1 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 202495 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 210.5 chr1 18575556 18575806 + 1 NA Intergenic Intergenic -55165 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 240.667-19 chr17 57811278 57811562 + 1 NA Intergenic Intergenic 38624 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 224.667-7 chr10 91479246 91479729 + 1 NA intron (NM_182765, intron 6 of 20) intron (NM_182765, intron 6 of 20) 69202 NM_173497 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 200.667-31 chr20 51477210 51477448 + 1 NA intron (NM_012340, intron 3 of 10) L1ME3G|LINE|L1 -24352 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 168.5-5 chr10 48357985 48358211 + 1 NA intron (NM_001323302, intron 3 of 13) L1MB4|LINE|L1 -43514 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 316.833 chr10 17617254 17617798 + 1 NA promoter-TSS (NM_014241) promoter-TSS (NM_014241) -152 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 236.667-38 chr9 108254962 108255415 + 1 NA Intergenic Intergenic 600798 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 225.333-11 chr11 85332307 85332633 + 1 NA intron (NM_001142699, intron 3 of 27) L1PA15|LINE|L1 294800 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 170.167-31 chr3 132731320 132731934 + 1 NA intron (NR_002811, intron 2 of 10) ERV24_Prim-int|LTR|ERV1 -9168 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 247.833-18 chr6 38974795 38975156 + 1 NA intron (NM_001371, intron 84 of 91) MIRb|SINE|MIR -21868 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 172.5-19 chr16 73486516 73486730 + 1 NA Intergenic Intergenic 99818 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 216.5-2 chr1 61490437 61490792 + 1 NA Intergenic Intergenic -163628 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 215.167-13 chr17 65172131 65172774 + 1 NA intron (NM_003835, intron 8 of 18) AluSx1|SINE|Alu 35082 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 178.333-4 chr1 230104650 230104926 + 1 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 37550 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 290.667-22 chr8 108477392 108477727 + 1 NA intron (NR_138033, intron 8 of 9) intron (NR_138033, intron 8 of 9) 33935 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 254.5-11 chr16 50412659 50413177 + 1 NA Intergenic L1MB5|LINE|L1 -17785 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 314.333 chr10 36609653 36610158 + 1 NA Intergenic Intergenic -515952 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 164.167-44 chr6 15256292 15256686 + 1 NA intron (NM_001267040, intron 1 of 17) intron (NM_001267040, intron 1 of 17) 7634 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 169.167-28 chr5 161544659 161544872 + 1 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 3359 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 172.167-11 chr2 7486122 7486534 + 0.833333 NA Intergenic L1ME1|LINE|L1 65067 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 194.667-40 chr3 122245880 122246228 + 0.833333 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 61727 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 224.5-40 chr7 24978890 24979209 + 0.833333 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 1129 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 216.333-40 chr6 79574585 79575071 + 0.833333 NA Intergenic MLT1G|LTR|ERVL-MaLR -37398 NM_181714 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 lebercilin LCA5 protein-coding 164.5-13 chr13 101149960 101150158 + 0.833333 NA intron (NM_001350749, intron 15 of 43) L1ME3A|LINE|L1 -205695 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 199.667-11 chr11 126022403 126022831 + 0.833333 NA intron (NM_016952, intron 2 of 19) intron (NM_016952, intron 2 of 19) 40675 NM_016952 50937 Hs.38034 NM_016952 ENSG00000064309 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 205.5-18 chr18 70225073 70225446 + 0.833333 NA Intergenic Intergenic -19572 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 211.333-31 chr3 183671311 183671653 + 0.833333 NA intron (NM_001349426, intron 5 of 6) intron (NM_001349426, intron 5 of 6) -26315 NM_001351371 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 174-16 chr17 16184663 16185035 + 0.833333 NA intron (NM_001190440, intron 2 of 44) L1MA9|LINE|L1 9790 NM_001190440 9611 Hs.462323 NM_006311 ENSG00000141027 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 273-5 chr10 103235766 103236188 + 0.833333 NA Intergenic AluJo|SINE|Alu -9910 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 250.833-17 chrX 133116413 133116848 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -88358 NM_031907 83844 Hs.333137 NM_031907 ENSG00000134588 USP26 - ubiquitin specific peptidase 26 protein-coding 215.167-30 chr7 825366 825758 + 0.833333 NA intron (NM_001367651, intron 2 of 21) intron (NM_001367651, intron 2 of 21) -6914 NM_001130965 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 177.167-15 chr20 22216360 22216774 + 0.833333 NA Intergenic Intergenic 66234 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 195.667-35 chr5 19860570 19860933 + 0.833333 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 25521 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 163.167-4 chr1 76626638 76626930 + 0.833333 NA intron (NR_146056, intron 4 of 5) L2a|LINE|L2 152483 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 209-46 chr9 71290438 71290806 + 0.833333 NA intron (NM_001366143, intron 1 of 25) L1ME3D|LINE|L1 156349 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 163.5-31 chr3 184816217 184816451 + 0.833333 NA TTS (NR_146115) TTS (NR_146115) 3827 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 399-11 chr6 13278283 13279009 + 0.833333 NA TTS (NR_160971) TTS (NR_160971) 4796 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 224.5-11 chr14 83281648 83281990 + 0.833333 NA Intergenic Intergenic 639187 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 163.667-5 chr1 172903231 172903556 + 0.833333 NA Intergenic Intergenic 147570 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 271.833-18 chr9 90672670 90673335 + 0.833333 NA Intergenic MER57A-int|LTR|ERV1 -30178 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 189.167-17 chr14 94423626 94423924 + 0.833333 NA Intergenic Intergenic 29025 NM_001080451 256394 Hs.145890 NM_001080451 ENSG00000186910 SERPINA11 - serpin family A member 11 protein-coding 201.333-49 chr8 20977522 20977913 + 0.833333 NA intron (NR_033894, intron 1 of 4) intron (NR_033894, intron 1 of 4) 3731 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 183.167-7 chr11 86194373 86194702 + 0.833333 NA Intergenic Intergenic -49847 NM_001330334 8726 Hs.503510 NM_003797 ENSG00000074266 EED COGIS|HEED|WAIT1 embryonic ectoderm development protein-coding 237-22 chr2 222903792 222904345 + 0.833333 NA intron (NM_004457, intron 3 of 16) AluSp|SINE|Alu 43032 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 184.833-31 chr8 113994752 113995084 + 0.833333 NA Intergenic L2a|LINE|L2 -557979 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 402.167-10 chr4 67889714 67890486 + 0.833333 NA Intergenic L2|LINE|L2 -6098 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 203.167-13 chr19 51158648 51159004 + 0.833333 NA intron (NR_110732, intron 2 of 4) intron (NR_110732, intron 2 of 4) -8502 NR_047531 284367 Hs.132045 NR_002804 ENSG00000171101 SIGLEC17P HSPC078|SIGLECP2|SIGLECP3 sialic acid binding Ig like lectin 17, pseudogene pseudo 190.833 chr1 11003175 11003499 + 0.833333 NA Intergenic AluJb|SINE|Alu -9285 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 259.333-12 chr15 76145587 76146006 + 0.833333 NA intron (NM_152335, intron 3 of 10) intron (NM_152335, intron 3 of 10) 35690 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 172.667-20 chr15 77071040 77071364 + 0.833333 NA promoter-TSS (NM_001168412) promoter-TSS (NM_001168412) -93 NM_005724 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 208.833-16 chr2 10302494 10302876 + 0.833333 NA promoter-TSS (NM_002149) promoter-TSS (NM_002149) -219 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 228.667-49 chr7 83037990 83038467 + 0.833333 NA intron (NM_033026, intron 3 of 24) L1MB7|LINE|L1 124656 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 212.333-32 chr7 52673672 52674121 + 0.833333 NA Intergenic AluSx3|SINE|Alu -361737 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 214.167-4 chr11 93746632 93747112 + 0.833333 NA intron (NM_001369406, intron 1 of 8) intron (NM_001369406, intron 1 of 8) 429 NM_001369406 28970 Hs.8360 NM_014039 ENSG00000182919 C11orf54 PTD012|PTOD012 chromosome 11 open reading frame 54 protein-coding 178.5-23 chr2 74683926 74684204 + 0.833333 NA TTS (NM_004263) TTS (NM_004263) 29818 NM_001271661 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 191.5-51 chr9 69296125 69296472 + 0.833333 NA TTS (NR_047671) TTS (NR_047671) 10758 NR_047671 100885775 Hs.49768 NR_047671 ENSG00000278910 BANCR LINC00586 BRAF-activated non-protein coding RNA ncRNA 219.5-28 chr5 149445940 149446385 + 0.833333 NA Intergenic Intergenic 15516 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 166.167 chr1 91615373 91615645 + 0.833333 NA Intergenic Intergenic 114401 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 185.667-34 chr4 42806588 42806830 + 0.833333 NA Intergenic Intergenic -86557 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 224.333-34 chr7 22557339 22557812 + 0.833333 NA Intergenic Intergenic -5762 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 251.5-16 chr22 25020520 25021168 + 0.833333 NA Intergenic L2c|LINE|L2 -7130 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 247-3 chr1 204128461 204129268 + 0.833333 NA Intergenic L3|LINE|CR1 -12544 NR_123739 101929441 Hs.736889 NR_123739 ENSG00000230550 ERLNC1 ElncRNA1|TC0101441 estrogen receptor responsive lncRNA 1 ncRNA 204.167-6 chr12 23618222 23618544 + 0.833333 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -33797 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 236.167-3 chr1 78332983 78333434 + 0.833333 NA intron (NR_027310, intron 3 of 5) LTR88c|LTR|Gypsy? 103609 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 199-36 chr4 162154778 162155194 + 0.833333 NA intron (NM_001128428, intron 1 of 14) intron (NM_001128428, intron 1 of 14) 9014 NM_020116 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 317.667-3 chr14 54568226 54568693 + 0.833333 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 847 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 186.667-8 chr1 200918076 200918346 + 0.833333 NA Intergenic L2a|LINE|L2 -10733 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 214.333-38 chr5 132180045 132180348 + 0.833333 NA Intergenic Intergenic -4680 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 240-28 chr2 15379764 15380257 + 0.833333 NA intron (NR_052013, intron 29 of 50) L1MB5|LINE|L1 181324 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 168.167-33 chr6 117674927 117675280 + 0.833333 NA promoter-TSS (NM_138459) promoter-TSS (NM_138459) 181 NR_110854 101927919 Hs.467500 NR_110854 LOC101927919 - uncharacterized LOC101927919 ncRNA 277-29 chr7 33129175 33129576 + 0.833333 NA promoter-TSS (NM_001348037) promoter-TSS (NM_001348037) 90 NR_145411 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 229.5-24 chr3 74170431 74170822 + 0.833333 NA Intergenic Intergenic 350514 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 252.5-27 chr9 27724751 27725129 + 0.833333 NA Intergenic L2|LINE|L2 -151074 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 163.167-25 chr2 199606535 199606779 + 0.833333 NA Intergenic Intergenic -1411 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 221.833-9 chr16 48154772 48155355 + 0.833333 NA Intergenic Intergenic -8293 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 175.5-21 chr14 70571434 70571771 + 0.833333 NA Intergenic L1PA17|LINE|L1 29088 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 221.167-27 chr8 120168198 120168664 + 0.833333 NA intron (NM_021110, intron 5 of 47) intron (NM_021110, intron 5 of 47) 43329 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 281.333-21 chr4 79037150 79037616 + 0.833333 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 65635 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 208.833-22 chr4 112594368 112594819 + 0.833333 NA intron (NM_001350397, intron 9 of 26) AluSz|SINE|Alu -42371 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 220.833-11 chr15 66695045 66695486 + 0.833333 NA Intergenic Charlie16a|DNA|hAT-Charlie -6971 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 264.667-6 chr17 59165406 59166031 + 0.833333 NA intron (NM_018304, intron 1 of 9) AluSp|SINE|Alu 9972 NM_018304 55771 Hs.631750 NM_018304 ENSG00000068489 PRR11 - proline rich 11 protein-coding 173.333-35 chr8 86508830 86509087 + 0.833333 NA promoter-TSS (NM_016033) promoter-TSS (NM_016033) -178 NM_001286707 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 197.667-14 chr11 132402594 132403048 + 0.833333 NA Intergenic Intergenic 118519 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 186.833-19 chr5 157385198 157385474 + 0.833333 NA intron (NM_001037333, intron 28 of 30) intron (NM_001037333, intron 28 of 30) -39659 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 253.5-30 chr6 161576117 161576502 + 0.833333 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 105332 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 212.333-15 chr2 65780235 65780564 + 0.833333 NA Intergenic Intergenic -347800 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 233.833 chr1 162023923 162024465 + 0.833333 NA 5' UTR (NM_001297713, exon 1 of 8) 5' UTR (NM_001297713, exon 1 of 8) 271 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 189.167-9 chr11 92535589 92535974 + 0.833333 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 183685 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 194.833-10 chr15 83948591 83948997 + 0.833333 NA intron (NM_207517, intron 19 of 29) (TTA)n|Simple_repeat|Simple_repeat -131393 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 164.333-16 chr14 64051367 64051668 + 0.833333 NA intron (NM_015180, intron 47 of 114) intron (NM_015180, intron 47 of 114) 43608 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 202.333-7 chr10 91605424 91605751 + 0.833333 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 5873 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 176.833-6 chr11 72814108 72814326 + 0.833333 NA promoter-TSS (NM_033388) promoter-TSS (NM_033388) -194 NM_033388 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 191.833-15 chr22 30280503 30281040 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 8856 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 CASTOR1 GATSL3 cytosolic arginine sensor for mTORC1 subunit 1 protein-coding 301-5 chr12 6180128 6180595 + 0.833333 NA Intergenic Intergenic -19585 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 175.5-50 chr6 146854189 146854537 + 0.833333 NA intron (NR_034115, intron 8 of 10) intron (NR_034115, intron 8 of 10) -50539 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 226.667-28 chr4 32057808 32058126 + 0.833333 NA intron (NR_125936, intron 1 of 2) THE1C-int|LTR|ERVL-MaLR -35545 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 189.833-10 chr17 65130654 65131071 + 0.833333 NA Intergenic Intergenic -6476 NM_001165933 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 236.167-6 chr14 54911386 54911814 + 0.833333 NA Intergenic Intergenic -8774 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 288.667-8 chr16 46931230 46931636 + 0.833333 NA TTS (NM_133443) TTS (NM_133443) 42241 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 185.5-36 chr6 144238744 144239154 + 0.833333 NA Intergenic L1MB8|LINE|L1 -52788 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 222.5-27 chr3 63037209 63037532 + 0.833333 NA Intergenic MIRc|SINE|MIR -65318 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 191.667-3 chr1 163107580 163108017 + 0.833333 NA Intergenic L1PA16|LINE|L1 35893 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 208.333-8 chr10 46230164 46230566 + 0.833333 NA intron (NR_103828, intron 2 of 2) L1PB4|LINE|L1 39243 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 202.667-22 chr2 204048214 204048581 + 0.833333 NA Intergenic Intergenic 111649 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 269.167-15 chr5 16240126 16240724 + 0.833333 NA Intergenic L1MA4|LINE|L1 60184 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 238.167-15 chr18 75598070 75598422 + 0.833333 NA Intergenic Intergenic 114157 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 234.333-20 chr20 49140603 49141178 + 0.833333 NA intron (NM_004602, intron 5 of 13) Charlie15b|DNA|hAT-Charlie 47480 NM_017452 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 184.333-22 chr2 119485058 119485339 + 0.833333 NA intron (NR_147846, intron 2 of 2) intron (NR_147846, intron 2 of 2) 8744 NR_147847 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 290.333-20 chr5 136770054 136770681 + 0.833333 NA Intergenic Intergenic -357830 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 210.5-17 chr17 40169387 40169826 + 0.833333 NA exon (NM_007359, exon 13 of 14) exon (NM_007359, exon 13 of 14) -7404 NM_001303533 51195 Hs.632254 NM_016339 ENSG00000108352 RAPGEFL1 Link-GEFII Rap guanine nucleotide exchange factor like 1 protein-coding 208.833-27 chr7 98840945 98841343 + 0.833333 NA Intergenic AluJr|SINE|Alu 28870 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 219.5-13 chr18 65215463 65215896 + 0.833333 NA Intergenic Intergenic -534573 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 203.167-20 chr3 12608950 12609320 + 0.833333 NA intron (NR_148942, intron 4 of 16) intron (NR_148942, intron 4 of 16) 52048 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 203.667-11 chr11 65683430 65683957 + 0.833333 NA Intergenic AluSg4|SINE|Alu -20721 NM_001243985 5970 Hs.502875 NM_021975 ENSG00000173039 RELA CMCU|NFKB3|p65 RELA proto-oncogene, NF-kB subunit protein-coding 175.167-23 chr2 78048224 78048454 + 0.833333 NA intron (NR_110288, intron 1 of 3) L1PB1|LINE|L1 -40391 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 249.167-23 chr6 46493326 46493715 + 0.833333 NA intron (NR_125837, intron 1 of 2) intron (NR_125837, intron 1 of 2) -1453 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 201.667-34 chr3 30587162 30587515 + 0.833333 NA Intergenic Intergenic -19164 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 254.167-26 chr8 72501321 72501856 + 0.833333 NA Intergenic Intergenic -35637 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 163.333-9 chr11 20714646 20714939 + 0.833333 NA intron (NM_201551, intron 2 of 18) L2b|LINE|L2 45206 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 165.333 chr1 6701971 6702321 + 0.833333 NA promoter-TSS (NM_018198) promoter-TSS (NM_018198) -330 NM_018198 55735 Hs.462640 NM_018198 ENSG00000007923 DNAJC11 dJ126A5.1 DnaJ heat shock protein family (Hsp40) member C11 protein-coding 176.667-13 chr12 50442318 50442545 + 0.833333 NA intron (NM_001352308, intron 8 of 14) intron (NM_001352308, intron 8 of 14) -14140 NR_132753 106633800 NR_132753 SNORD133 ZL142|ZL42|ggn68 small nucleolar RNA, C/D box 133 snoRNA 220.333-17 chr2 178020412 178020716 + 0.833333 NA intron (NM_001077197, intron 2 of 20) AluSx1|SINE|Alu 52213 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 324.167-3 chr10 73157977 73158420 + 0.833333 NA intron (NM_007265, intron 3 of 13) AluSx|SINE|Alu 9810 NM_007265 11319 Hs.631822 NM_007265 ENSG00000122882 ECD GCR2|HSGT1|SGT1 ecdysoneless cell cycle regulator protein-coding 262.667-15 chr14 54539979 54540316 + 0.833333 NA TTS (NM_006568) TTS (NM_006568) -27465 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 302.167 chr1 188112034 188112826 + 0.833333 NA Intergenic Intergenic 668802 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 198.333-45 chr8 120957311 120957705 + 0.833333 NA Intergenic Intergenic -145462 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 197.167-37 chr7 24491646 24492018 + 0.833333 NA Intergenic Intergenic -81620 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 171-55 chr7 156764308 156764664 + 0.833333 NA intron (NR_146958, intron 5 of 14) intron (NR_146958, intron 5 of 14) 120685 NR_131778 140545 Hs.446194 NM_030936 ENSG00000105982 RNF32 FKSG33|HSD15|LMBR2 ring finger protein 32 protein-coding 169.667-41 chr3 144959935 144960252 + 0.833333 NA Intergenic MSTB|LTR|ERVL-MaLR 987012 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 369.5-3 chr11 106292670 106293520 + 0.833333 NA Intergenic L2|LINE|L2 41688 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 203-9 chr12 8989983 8990274 + 0.833333 NA intron (NM_005810, intron 1 of 4) intron (NM_005810, intron 1 of 4) 503 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 191-28 chr2 123507852 123508136 + 0.833333 NA Intergenic L1ME1|LINE|L1 -434513 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 229.833-9 chr15 80374209 80374641 + 0.833333 NA Intergenic Intergenic -29957 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 165.167-24 chr21 42010046 42010340 + 0.833333 NA intron (NR_119384, intron 1 of 1) CpG 167 NM_001320731 49854 Hs.434947 NM_020727 ENSG00000173276 ZBTB21 ZNF295 zinc finger and BTB domain containing 21 protein-coding 254.833-2 chr10 98601011 98601431 + 0.833333 NA intron (NM_021828, intron 9 of 11) MLT2D|LTR|ERVL -154258 NM_001311345 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 238.333-33 chr5 143888116 143888492 + 0.833333 NA Intergenic Intergenic 76143 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 251.333-3 chr1 216044741 216045227 + 0.833333 NA intron (NM_206933, intron 32 of 71) intron (NM_206933, intron 32 of 71) -27481 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 206.333-15 chr16 51827783 51828289 + 0.833333 NA Intergenic Intergenic 65517 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 197.667-44 chr7 25731347 25731869 + 0.833333 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 19424 NR_157814 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 195.667-28 chr3 14424886 14425277 + 0.833333 NA intron (NM_001134367, intron 2 of 14) intron (NM_001134367, intron 2 of 14) 22475 NM_001134368 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 177.833-25 chr2 162269542 162270116 + 0.833333 NA intron (NM_022168, intron 13 of 15) intron (NM_022168, intron 13 of 15) -26384 NM_004460 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 324.833-9 chr8 142473359 142474060 + 0.833333 NA intron (NM_001702, intron 2 of 30) intron (NM_001702, intron 2 of 30) 24060 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 268.333-16 chr7 36622637 36623210 + 0.833333 NA intron (NM_001177507, intron 6 of 19) AluSz|SINE|Alu -22803 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 183.333-32 chr17 76100066 76100369 + 0.833333 NA TTS (NM_001282314) TTS (NM_001282314) -2141 NR_106928 102466753 NR_106928 ENSG00000275360 MIR6868 hsa-mir-6868 microRNA 6868 ncRNA 255.833-4 chr10 84163315 84163850 + 0.833333 NA Intergenic MER4D1|LTR|ERV1 8494 NR_134505 642934 NR_134505 ENSG00000285972 CERNA2 HOST2|lncRNA-HOST2 competing endogenous lncRNA 2 for microRNA let-7b ncRNA 181.333-34 chr5 14365924 14366263 + 0.833333 NA intron (NM_007118, intron 15 of 56) intron (NM_007118, intron 15 of 56) -97890 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 213-7 chr11 32279523 32279786 + 0.833333 NA Intergenic Intergenic 120746 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 170.833-29 chr6 17869406 17869698 + 0.833333 NA intron (NM_001105567, intron 4 of 36) MIR|SINE|MIR 118083 NM_022113 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 170.5-23 chr2 112256199 112256584 + 0.833333 NA Intergenic Intergenic -1349 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 196-12 chr14 64306799 64307153 + 0.833333 NA intron (NM_001291712, intron 2 of 13) L1M5|LINE|L1 -12566 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 278.167-22 chr5 73289180 73289909 + 0.833333 NA Intergenic Intergenic -48362 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 209.833-18 chr20 15937746 15938098 + 0.833333 NA intron (NM_001351663, intron 12 of 17) intron (NM_001351663, intron 12 of 17) -14608 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 170.833-2 chr1 64460170 64460413 + 0.833333 NA Intergenic Intergenic -9838 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 248.833-21 chr5 91723257 91723731 + 0.833333 NA Intergenic Intergenic -340177 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 181.5-27 chr20 11737338 11737697 + 0.833333 NA Intergenic MIRb|SINE|MIR 133198 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 255.167-9 chr11 21815733 21816252 + 0.833333 NA Intergenic MIRb|SINE|MIR -377093 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 181.5-40 chr6 52377989 52378442 + 0.833333 NA intron (NM_133367, intron 1 of 1) MIR|SINE|MIR 16064 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 219.667-14 chr18 13103162 13103628 + 0.833333 NA intron (NM_032142, intron 38 of 44) intron (NM_032142, intron 38 of 44) 112033 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 278.333-20 chr5 38921980 38922527 + 0.833333 NA intron (NM_003999, intron 12 of 17) intron (NM_003999, intron 12 of 17) 76241 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 200.833-8 chr10 115686605 115687157 + 0.833333 NA intron (NM_207303, intron 26 of 28) L1MB1|LINE|L1 507908 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 165.167-19 chr2 85466352 85466574 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR 47532 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 217.667-10 chr11 11841946 11842252 + 0.833333 NA 5' UTR (NM_017944, exon 1 of 27) 5' UTR (NM_017944, exon 1 of 27) 676 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 223-45 chrX 130079733 130080260 + 0.833333 NA intron (NM_001127197, intron 2 of 8) intron (NM_001127197, intron 2 of 8) 30504 NM_001421 2000 Hs.271940 NM_001421 ENSG00000102034 ELF4 ELFR|MEF E74 like ETS transcription factor 4 protein-coding 181.167-29 chr7 13326177 13326584 + 0.833333 NA Intergenic L1ME2|LINE|L1 638747 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 184.333-31 chr5 110612310 110612716 + 0.833333 NA intron (NM_001039763, intron 8 of 13) intron (NM_001039763, intron 8 of 13) -98598 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 294.833-10 chr7 99447731 99448086 + 0.833333 NA intron (NM_001318162, intron 2 of 7) AluY|SINE|Alu 8532 NM_001318162 10898 Hs.489287 NM_006693 ENSG00000160917 CPSF4 CPSF30|NAR|NEB-1|NEB1 cleavage and polyadenylation specific factor 4 protein-coding 176.167-9 chr12 13100546 13100793 + 0.833333 NA intron (NM_001080555, intron 1 of 6) intron (NM_001080555, intron 1 of 6) 2998 NR_159953 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 172.5-39 chr4 52927216 52927648 + 0.833333 NA intron (NM_152540, intron 5 of 8) Tigger13a|DNA|TcMar-Tigger 65115 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 193.833-15 chr18 4101802 4102231 + 0.833333 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 139663 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 184-18 chr12 22083138 22083381 + 0.833333 NA Intergenic Intergenic 37041 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 277.5-20 chr7 36591380 36591749 + 0.833333 NA intron (NM_001177507, intron 11 of 19) intron (NM_001177507, intron 11 of 19) 8556 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 185.333-32 chr3 30079613 30079884 + 0.833333 NA Intergenic MIRb|SINE|MIR -145592 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 174.5-35 chr8 79099648 79099981 + 0.833333 NA Intergenic L2|LINE|L2 -232374 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 237.667-30 chr4 61191548 61192089 + 0.833333 NA Intergenic Intergenic -9412 NM_001371344 169.167-4 chr1 70903406 70903773 + 0.833333 NA intron (NR_028293, intron 2 of 4) intron (NR_028293, intron 2 of 4) -142917 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 218.167-17 chr3 114979834 114980204 + 0.833333 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) -79394 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 327-21 chrX 74599588 74600239 + 0.833333 NA intron (NM_016120, intron 1 of 3) intron (NM_016120, intron 1 of 3) 14711 NM_183353 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 195.667-10 chr12 57461786 57462111 + 0.833333 NA intron (NM_001160045, intron 1 of 9) intron (NM_001160045, intron 1 of 9) 1797 NM_001167609 2735 Hs.632702 NM_005269 ENSG00000111087 GLI1 GLI|PAPA8|PPD1 GLI family zinc finger 1 protein-coding 235.5-2 chr1 154299246 154299761 + 0.833333 NA Intergenic AluJb|SINE|Alu -21590 NM_080429 89872 Hs.259048 NM_080429 ENSG00000143595 AQP10 AQPA_HUMAN aquaporin 10 protein-coding 218.5-8 chr11 7642485 7642990 + 0.833333 NA intron (NM_001351860, intron 15 of 21) L3|LINE|CR1 30154 NM_001302827 51700 Hs.414362 NM_016229 ENSG00000166394 CYB5R2 B5R.2 cytochrome b5 reductase 2 protein-coding 166.5-40 chr7 74420637 74420916 + 0.833333 NA Intergenic AluJb|SINE|Alu -33130 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 198.167-4 chr1 177256028 177256512 + 0.833333 NA intron (NM_021165, intron 3 of 7) intron (NM_021165, intron 3 of 7) 85312 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 242.5-3 chr1 172589019 172589634 + 0.833333 NA exon (NM_016227, exon 17 of 23) exon (NM_016227, exon 17 of 23) 56176 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 361.167-4 chr18 41113496 41114083 + 0.833333 NA Intergenic Intergenic 406888 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 169.5-18 chr19 13093731 13094015 + 0.833333 NA intron (NM_001365984, intron 9 of 9) intron (NM_001365984, intron 9 of 9) 8985 NM_005583 4066 Hs.46446 NM_005583 ENSG00000104903 LYL1 bHLHa18 LYL1 basic helix-loop-helix family member protein-coding 164.333-23 chr18 32899771 32899992 + 0.833333 NA Intergenic Intergenic -126858 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 231.667-9 chr18 5660749 5661205 + 0.833333 NA Intergenic Intergenic -31986 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 238.667-9 chr14 62165189 62165673 + 0.833333 NA Intergenic Intergenic -25458 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 218.333-31 chr9 23347992 23348436 + 0.833333 NA Intergenic L1MA8|LINE|L1 324185 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 207.5-12 chr14 40411256 40411643 + 0.833333 NA Intergenic MLT1H2|LTR|ERVL-MaLR -543262 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 252-31 chr7 23623930 23624410 + 0.833333 NA intron (NM_138771, intron 3 of 3) HAL1|LINE|L1 26788 NM_138771 90693 Hs.232296 NM_138771 ENSG00000169193 CCDC126 - coiled-coil domain containing 126 protein-coding 249.5-5 chr14 40304125 40304781 + 0.833333 NA Intergenic Intergenic -650258 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 165-22 chr16 84044104 84044397 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -2093 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 283.5-10 chr2 213311956 213312376 + 0.833333 NA intron (NM_001025436, intron 4 of 4) MER58A|DNA|hAT-Charlie 27702 NR_047660 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 241.167-14 chr2 33058710 33059206 + 0.833333 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -75639 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 296.333-10 chr4 97009841 97010286 + 0.833333 NA Intergenic Intergenic -356863 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 176.167-27 chr3 71009414 71009811 + 0.833333 NA intron (NM_001244812, intron 7 of 15) intron (NM_001244812, intron 7 of 15) 55312 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 263.5-27 chr7 4334104 4334457 + 0.833333 NA Intergenic MER41A|LTR|ERV1 -199443 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 199.833-19 chr2 218087862 218088336 + 0.833333 NA intron (NR_034176, intron 12 of 13) HAL1|LINE|L1 19084 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 225.667-41 chr9 105648908 105649495 + 0.833333 NA Intergenic Intergenic -13256 NM_005421 6887 Hs.247978 NM_005421 ENSG00000186051 TAL2 - TAL bHLH transcription factor 2 protein-coding 176-7 chr10 83604927 83605410 + 0.833333 NA Intergenic Intergenic 71921 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 199.5 chr1 44418867 44419253 + 0.833333 NA intron (NM_001319956, intron 2 of 14) intron (NM_001319956, intron 2 of 14) -4941 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 188.333-43 chr8 126456923 126457286 + 0.833333 NA Intergenic MER58D|DNA|hAT-Charlie 101374 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 203.333-20 chr14 34497696 34497989 + 0.833333 NA Intergenic AluSq|SINE|Alu -35602 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 227.833-9 chr17 8949514 8949894 + 0.833333 NA intron (NM_001142633, intron 1 of 18) L1PB1|LINE|L1 16003 NM_001251851 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 226.167-10 chr14 95010864 95011343 + 0.833333 NA Intergenic Intergenic 122400 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 163.833-26 chr21 30072363 30072629 + 0.833333 NA Intergenic Intergenic 94309 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 196.333-9 chr12 2620113 2620602 + 0.833333 NA intron (NM_001129840, intron 29 of 46) intron (NM_001129840, intron 29 of 46) 51863 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 196-4 chr11 74726439 74726788 + 0.833333 NA intron (NM_015424, intron 1 of 11) intron (NM_015424, intron 1 of 11) 4813 NM_001278473 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 194.834-6 chr12 91177986 91178607 + 0.833333 NA intron (NM_001920, intron 2 of 7) intron (NM_001920, intron 2 of 7) 350 NM_133506 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 217.833 chr1 89222996 89223306 + 0.833333 NA Intergenic L1PA14|LINE|L1 -24209 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 217.667-4 chr1 163035478 163035819 + 0.833333 NA Intergenic Intergenic -32958 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 246.833-12 chr5 85890326 85890815 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -391874 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 271-33 chr8 118910658 118911110 + 0.833333 NA Intergenic MIRb|SINE|MIR 41001 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 169.833-17 chr16 28879696 28879935 + 0.833333 NA promoter-TSS (NM_001286075) promoter-TSS (NM_001286075) 106 NR_046287 100289092 Hs.666631 NR_046287 ENSG00000260442 ATP2A1-AS1 - ATP2A1 antisense RNA 1 ncRNA 216-25 chr2 49559918 49560266 + 0.833333 NA Intergenic Intergenic -405565 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 179.333-36 chr4 63241219 63241449 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -1079569 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 186.667-31 chr16 83624555 83624809 + 0.833333 NA intron (NM_001220489, intron 7 of 12) MER1B|DNA|hAT-Charlie 116336 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 251.333-31 chr8 121329727 121330244 + 0.833333 NA Intergenic L1HS|LINE|L1 -309361 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 235.5-8 chr18 3629116 3629730 + 0.833333 NA intron (NM_001242761, intron 7 of 11) AluYm1|SINE|Alu 25686 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 182.333-13 chr2 57515013 57515340 + 0.833333 NA Intergenic Intergenic -392475 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 187.667-34 chr3 124281759 124282156 + 0.833333 NA intron (NM_001024660, intron 5 of 59) intron (NM_001024660, intron 5 of 59) -92375 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 269.833-3 chr11 118659279 118659651 + 0.833333 NA exon (NM_001301065, exon 11 of 14) exon (NM_001301065, exon 11 of 14) 15465 NR_106773 102466719 NR_106773 ENSG00000284246 MIR6716 hsa-mir-6716 microRNA 6716 ncRNA 208.667-35 chr5 35759762 35760062 + 0.833333 NA intron (NM_024867, intron 25 of 36) MER46C|DNA|TcMar-Tigger -96979 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 194.667-37 chr20 52170779 52171159 + 0.833333 NA intron (NM_199427, intron 2 of 8) L2a|LINE|L2 20810 NM_199426 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 282.5-7 chr16 56805394 56806064 + 0.833333 NA intron (NM_014669, intron 5 of 21) L2a|LINE|L2 22273 NM_001242796 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 270.167-4 chr10 74141678 74142081 + 0.833333 NA intron (NM_207012, intron 1 of 9) AluSx3|SINE|Alu 8949 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 210.167-17 chr18 35713724 35714138 + 0.833333 NA Intergenic L1ME2|LINE|L1 59362 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 186.167-18 chr4 113918452 113918700 + 0.833333 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 61071 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 236.333-2 chr10 11831526 11831950 + 0.833333 NA intron (NM_153256, intron 1 of 3) intron (NM_153256, intron 1 of 3) 8382 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 255.167-24 chr3 112731563 112731964 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -5326 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 214.833-4 chr10 14732898 14733332 + 0.833333 NA intron (NM_031453, intron 1 of 4) (ATAAT)n|Simple_repeat|Simple_repeat 41782 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 180.667-47 chr8 135197079 135197522 + 0.833333 NA Intergenic Intergenic -36831 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 249.5-19 chr4 146790973 146791494 + 0.833333 NA intron (NR_133922, intron 12 of 13) Tigger1|DNA|TcMar-Tigger 152340 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 191.833-6 chr11 56021780 56022161 + 0.833333 NA Intergenic Intergenic -8449 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 307.5-18 chr2 154339801 154340495 + 0.833333 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 117290 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 193.333-48 chr5 164511635 164512038 + 0.833333 NA intron (NR_105065, intron 2 of 3) intron (NR_105065, intron 2 of 3) 41557 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 180.5-38 chr6 121240458 121240734 + 0.833333 NA intron (NR_104452, intron 19 of 35) intron (NR_104452, intron 19 of 35) 93884 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 164.5-30 chr2 110771647 110772063 + 0.833333 NA intron (NM_001371254, intron 2 of 18) intron (NM_001371254, intron 2 of 18) 39282 NM_001371254 243.667-7 chr12 101754486 101754893 + 0.833333 NA intron (NM_024312, intron 18 of 20) intron (NM_024312, intron 18 of 20) -15217 NM_001177948 50511 Hs.506504 NM_153694 ENSG00000139351 SYCP3 COR1|RPRGL4|SCP3|SPGF4 synaptonemal complex protein 3 protein-coding 433-2 chr12 51923277 51924284 + 0.833333 NA TTS (NM_000020) TTS (NM_000020) 11397 NM_001077401 94 Hs.591026 NM_000020 ENSG00000139567 ACVRL1 ACVRLK1|ALK-1|ALK1|HHT|HHT2|ORW2|SKR3|TSR-I activin A receptor like type 1 protein-coding 184.667-16 chr14 58731656 58732047 + 0.833333 NA Intergenic Intergenic 93014 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 166.833-24 chr4 30320875 30321186 + 0.833333 NA Intergenic FLAM_A|SINE|Alu -399339 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 197.167-22 chr2 64266385 64266931 + 0.833333 NA Intergenic MLT2C1|LTR|ERVL 38257 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 265.833-14 chr3 33589547 33589983 + 0.833333 NA intron (NM_001365634, intron 19 of 35) intron (NM_001365634, intron 19 of 35) 69914 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 238-9 chr14 53948579 53949110 + 0.833333 NA promoter-TSS (NR_049843) promoter-TSS (NR_049843) -360 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 314.333-4 chr13 35978267 35978926 + 0.833333 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) -122735 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 179.833-30 chr8 124502692 124503055 + 0.833333 NA intron (NM_001146160, intron 7 of 9) AluJr|SINE|Alu 5703 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 167.167-27 chr5 112976266 112976650 + 0.833333 NA promoter-TSS (NM_001242377) promoter-TSS (NM_001242377) -340 NM_001242377 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 388.5-6 chr8 87218690 87219542 + 0.833333 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 352701 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 291.333-13 chr3 186614690 186615359 + 0.833333 NA intron (NM_001354572, intron 1 of 6) intron (NM_001354572, intron 1 of 6) 1964 NM_001622 197 Hs.324746 NM_001622 ENSG00000145192 AHSG A2HS|AHS|APMR1|FETUA|HSGA alpha 2-HS glycoprotein protein-coding 257-31 chr6 150601684 150602112 + 0.833333 NA intron (NM_001329799, intron 1 of 15) intron (NM_001329799, intron 1 of 15) 2013 NR_138136 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 258.333-11 chr3 179886851 179887220 + 0.833333 NA intron (NM_001349401, intron 1 of 11) intron (NM_001349401, intron 1 of 11) -11159 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 200.833-26 chr7 26196923 26197175 + 0.833333 NA intron (NM_002137, intron 3 of 10) intron (NM_002137, intron 3 of 10) 3697 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 367-17 chr3 13479653 13480328 + 0.833333 NA promoter-TSS (NM_001330636) promoter-TSS (NM_001330636) 63 NR_046690 100874101 Hs.535701 NR_046690 ENSG00000244502 HDAC11-AS1 - HDAC11 antisense RNA 1 ncRNA 224.833-15 chr21 30325548 30326008 + 0.833333 NA Intergenic MLT2B2|LTR|ERVL -5463 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 208.667-12 chr12 54952683 54953023 + 0.833333 NA intron (NM_001351149, intron 11 of 11) L2|LINE|L2 20879 NM_001351148 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 208.5-36 chr5 144397827 144398345 + 0.833333 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 192695 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 233-9 chr18 13135118 13135550 + 0.833333 NA Intergenic Intergenic -83426 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 166.167-3 chr1 156338100 156338413 + 0.833333 NA promoter-TSS (NM_001304820) promoter-TSS (NM_001304820) 36 NM_005998 7203 Hs.491494 NM_005998 ENSG00000163468 CCT3 CCT-gamma|CCTG|PIG48|TCP-1-gamma|TRIC5 chaperonin containing TCP1 subunit 3 protein-coding 200.667-52 chr7 101169690 101169999 + 0.833333 NA TTS (NM_198571) TTS (NM_198571) -4275 NM_003378 7425 Hs.587325 NM_003378 ENSG00000128564 VGF SCG7|SgVII VGF nerve growth factor inducible protein-coding 286.167-9 chr14 62367827 62368382 + 0.833333 NA Intergenic MER89-int|LTR|ERV1 -228131 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 193.833-27 chr7 9982791 9983203 + 0.833333 NA Intergenic Intergenic 348727 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 259.5-18 chr2 162334202 162334542 + 0.833333 NA intron (NM_001330265, intron 2 of 8) intron (NM_001330265, intron 2 of 8) -9760 NM_012198 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 202-27 chr22 41638406 41638691 + 0.833333 NA intron (NM_001288976, intron 6 of 12) AluSc|SINE|Alu 17253 NM_001288976 2547 Hs.292493 NM_001469 ENSG00000196419 XRCC6 CTC75|CTCBF|G22P1|KU70|ML8|TLAA X-ray repair cross complementing 6 protein-coding 245-21 chr22 19237002 19237377 + 0.833333 NA intron (NM_007098, intron 5 of 32) intron (NM_007098, intron 5 of 32) 54530 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 168.5-48 chr8 57544395 57544770 + 0.833333 NA Intergenic MIR|SINE|MIR 200795 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 223.5-15 chr2 62786446 62786990 + 0.833333 NA intron (NM_001142615, intron 5 of 22) MamRTE1|LINE|RTE-BovB 79821 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 192.333-8 chr11 134699038 134699359 + 0.833333 NA Intergenic Intergenic -36747 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 191.833-5 chr10 105592485 105592884 + 0.833333 NA Intergenic Intergenic 227649 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 239.667-26 chr22 26484718 26485058 + 0.833333 NA intron (NM_001013694, intron 1 of 6) intron (NM_001013694, intron 1 of 6) 1011 NM_001013694 402055 Hs.709914 NM_001013694 ENSG00000100104 SRRD HC/HCC|SRR1L SRR1 domain containing protein-coding 182.5-21 chr2 41090203 41090466 + 0.833333 NA Intergenic Intergenic -577899 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 229.5-29 chr4 100083470 100083937 + 0.833333 NA Intergenic Intergenic -106330 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 223.667-32 chr2 205757831 205758283 + 0.833333 NA intron (NM_018534, intron 12 of 15) intron (NM_018534, intron 12 of 15) 75556 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 199.333-18 chr14 82488195 82488464 + 0.833333 NA Intergenic Intergenic -154303 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 214.167-14 chr2 200446147 200446530 + 0.833333 NA intron (NM_001100423, intron 8 of 12) AluJr|SINE|Alu 63730 NM_001321548 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 185.167-4 chr10 124461779 124462027 + 0.833333 NA promoter-TSS (NM_001167880) promoter-TSS (NM_001167880) 80 NM_001318331 64077 Hs.527748 NM_022126 ENSG00000107902 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 315-22 chrX 54920247 54920817 + 0.833333 NA promoter-TSS (NM_016157) promoter-TSS (NM_016157) -31 NM_001271183 7216 Hs.633653 NM_016157 ENSG00000067445 TRO MAGE-d3|MAGED3 trophinin protein-coding 195-34 chr5 20073980 20074281 + 0.833333 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -85930 NM_001349561 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 179-2 chr1 67423897 67424240 + 0.833333 NA intron (NM_001018068, intron 5 of 7) intron (NM_001018068, intron 5 of 7) 6334 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 242.167-11 chr16 48318063 48318536 + 0.833333 NA intron (NM_031490, intron 11 of 14) AluSz|SINE|Alu 47588 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 178.833-43 chr9 74400654 74400996 + 0.833333 NA Intergenic Intergenic 29294 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 233-26 chr5 172311478 172312032 + 0.833333 NA Intergenic Intergenic 26158 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 201.834-10 chr6 150640035 150640727 + 0.833333 NA intron (NM_001329804, intron 2 of 17) L2|LINE|L2 7417 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 201-24 chr20 34106642 34106965 + 0.833333 NA intron (NM_003908, intron 1 of 8) intron (NM_003908, intron 1 of 8) 5440 NM_003908 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 240.167-18 chr5 102031309 102031763 + 0.833333 NA Intergenic Intergenic 264748 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 175.333-45 chr6 42877688 42878045 + 0.833333 NA Intergenic Intergenic -1750 NR_134563 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 224.5-14 chr16 72493002 72493607 + 0.833333 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 171666 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 239.833-18 chr7 87505831 87506314 + 0.833333 NA intron (NM_001348944, intron 28 of 29) intron (NM_001348944, intron 28 of 29) -30369 NM_018850 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 314.833-14 chr9 37498940 37499317 + 0.833333 NA intron (NM_001282766, intron 10 of 12) Tigger3a|DNA|TcMar-Tigger 13180 NM_022490 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 174.667-12 chr12 48487390 48487628 + 0.833333 NA intron (NM_152319, intron 4 of 8) intron (NM_152319, intron 4 of 8) 5011 NM_152319 121273 Hs.98202 NM_152319 ENSG00000177627 C12orf54 HSD-29|HSD-30 chromosome 12 open reading frame 54 protein-coding 209.333-8 chr1 186968574 186969047 + 0.833333 NA intron (NM_024420, intron 15 of 17) L1ME4a|LINE|L1 -124032 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 264.833-20 chr3 196837638 196838440 + 0.833333 NA Intergenic LTR86A2|LTR|ERVL -29817 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 237.833-9 chr2 7723304 7723789 + 0.833333 NA Intergenic Intergenic 176109 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 202.167-3 chr1 202346387 202346667 + 0.833333 NA Intergenic AluSx1|SINE|Alu -2172 NM_002481 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 315.833-3 chr10 75099724 75100535 + 0.833333 NA promoter-TSS (NM_016364) promoter-TSS (NM_016364) -639 NM_016364 51207 Hs.178170 NM_016364 ENSG00000079393 DUSP13 BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP dual specificity phosphatase 13 protein-coding 211-13 chr12 48890229 48890616 + 0.833333 NA Intergenic Charlie4z|DNA|hAT-Charlie -13711 NM_033124 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 163.833-25 chr2 197559295 197559646 + 0.833333 NA Intergenic L1MB1|LINE|L1 43172 NM_001204094 25843 Hs.633165 NM_015387 ENSG00000115540 MOB4 2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 256.167 chr1 7713512 7714103 + 0.833333 NA intron (NM_001349624, intron 1 of 11) Charlie4z|DNA|hAT-Charlie 9071 NM_001349616 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 264.333-26 chr7 23807502 23807926 + 0.833333 NA intron (NM_001260505, intron 22 of 22) L1MDa|LINE|L1 97495 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 185.333-49 chr7 99228213 99228585 + 0.833333 NA Intergenic Intergenic -20910 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 176.5-41 chr9 94297794 94298189 + 0.833333 NA intron (NM_194320, intron 4 of 4) AluSz|SINE|Alu 30653 NM_017561 54754 Hs.648183 NM_017561 ENSG00000130950 NUTM2F FAM22F|NUTMF NUT family member 2F protein-coding 243.833-13 chr16 81036579 81036988 + 0.833333 NA promoter-TSS (NM_001300728) promoter-TSS (NM_001300728) -415 NM_001300728 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 228.833-13 chr3 184711638 184712091 + 0.833333 NA promoter-TSS (NR_160768) promoter-TSS (NR_160768) 200 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 221.333-10 chr2 11457515 11457836 + 0.833333 NA intron (NM_001278276, intron 1 of 7) intron (NM_001278276, intron 1 of 7) 8486 NM_198256 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 207.833-13 chr2 24991962 24992290 + 0.833333 NA intron (NR_034113, intron 1 of 2) LTR28C|LTR|ERV1 20014 NR_034113 729723 Hs.436366 NR_034113 ENSG00000224165 DNAJC27-AS1 - DNAJC27 antisense RNA 1 ncRNA 185.667-6 chr1 247059799 247060218 + 0.833333 NA intron (NM_033213, intron 1 of 3) L1MC|LINE|L1 18803 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 214.833-18 chr6 35146628 35147141 + 0.833333 NA Intergenic Intergenic -5474 NM_018679 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 210.333-32 chr7 152473110 152473488 + 0.833333 NA Intergenic AluJb|SINE|Alu 9175 NR_027387 100128822 Hs.647112 NR_027387 ENSG00000261455 LINC01003 - long intergenic non-protein coding RNA 1003 ncRNA 170.167-30 chr3 124266077 124266518 + 0.833333 NA intron (NM_001024660, intron 4 of 59) intron (NM_001024660, intron 4 of 59) -108035 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 184.667-12 chr12 37615966 37616284 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -700649 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 209.333-29 chr4 126223401 126223961 + 0.833333 NA Intergenic Intergenic 716422 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 208.333-14 chr13 86318844 86319228 + 0.833333 NA Intergenic Intergenic -519617 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 172.333-35 chr2 225100916 225101159 + 0.833333 NA Intergenic L1MEf|LINE|L1 -58569 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 164-55 chr8 117350997 117351389 + 0.833333 NA Intergenic L1MA9|LINE|L1 -169520 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 206.5-14 chr14 49391472 49391761 + 0.833333 NA Intergenic L1PA15|LINE|L1 194764 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 170.5-24 chr2 125268828 125269036 + 0.833333 NA Intergenic Intergenic 849053 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 231.5-25 chr3 24299882 24300390 + 0.833333 NA intron (NM_001354710, intron 2 of 10) intron (NM_001354710, intron 2 of 10) 148812 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 258-15 chr17 82563132 82563675 + 0.833333 NA exon (NM_004514, exon 2 of 9) exon (NM_004514, exon 2 of 9) 43671 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 310-21 chr3 158510411 158511029 + 0.833333 NA intron (NM_001271838, intron 7 of 9) L1MA2|LINE|L1 -15988 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 239.333-10 chr17 42181644 42182234 + 0.833333 NA promoter-TSS (NM_012285) promoter-TSS (NM_012285) -797 NM_012285 23415 Hs.304081 NM_012285 ENSG00000089558 KCNH4 BEC2|ELK1|Kv12.3 potassium voltage-gated channel subfamily H member 4 protein-coding 249.333-3 chr11 121589327 121589710 + 0.833333 NA intron (NM_003105, intron 29 of 47) intron (NM_003105, intron 29 of 47) 137204 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 233.333-10 chr14 62952858 62953181 + 0.833333 NA intron (NM_139318, intron 6 of 10) intron (NM_139318, intron 6 of 10) 92439 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 225.5-14 chr2 102259802 102260124 + 0.833333 NA Intergenic Intergenic -51539 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 166.167-17 chr17 9109588 9109924 + 0.833333 NA intron (NM_004822, intron 2 of 6) L1ME3Cz|LINE|L1 69362 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 175.5-44 chr5 142710977 142711225 + 0.833333 NA Intergenic LTR103b_Mam|LTR|ERV1? -13031 NM_001257205 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 264-22 chr20 43520696 43521166 + 0.833333 NA intron (NM_032107, intron 7 of 21) intron (NM_032107, intron 7 of 21) 6490 NM_015478 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 255-21 chr2 190883840 190884205 + 0.833333 NA intron (NM_014905, intron 1 of 17) intron (NM_014905, intron 1 of 17) 3201 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 229.333-4 chr1 204488606 204488985 + 0.833333 NA intron (NM_002646, intron 2 of 33) intron (NM_002646, intron 2 of 33) 1551 NM_002646 5287 Hs.497487 NM_002646 ENSG00000133056 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding 200.5-14 chr15 58102542 58102898 + 0.833333 NA Intergenic L1MB7|LINE|L1 -35449 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 226-33 chr3 67633259 67633701 + 0.833333 NA intron (NM_001177599, intron 1 of 10) intron (NM_001177599, intron 1 of 10) 21134 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 285.167-13 chr4 36401953 36402581 + 0.833333 NA Intergenic L1MCa|LINE|L1 24161 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 200.167-26 chr7 40383211 40383586 + 0.833333 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 248422 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 216.333-29 chr3 105950218 105950625 + 0.833333 NA Intergenic L1MCa|LINE|L1 -81020 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 205.333-8 chr10 119608122 119608528 + 0.833333 NA Intergenic Intergenic -11296 NM_001323970 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 235.167-7 chr10 47407205 47407756 + 0.833333 NA non-coding (NR_134500, exon 1 of 4) non-coding (NR_134500, exon 1 of 4) 315 NR_134500 107001062 Hs.576719 NR_134500 LOC107001062 - uncharacterized LOC107001062 ncRNA 226.333-23 chr5 150760126 150760500 + 0.833333 NA Intergenic MIR|SINE|MIR -1218 NM_001135643 51164 Hs.675564 NM_016221 ENSG00000132912 DCTN4 DYN4|P62 dynactin subunit 4 protein-coding 182.667-48 chr7 86008480 86008745 + 0.833333 NA Intergenic Intergenic 587490 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 179.5-33 chr3 184399388 184399884 + 0.833333 NA Intergenic Intergenic -1901 NR_161198 105374250 Hs.129464 NR_161198 LINC02054 - long intergenic non-protein coding RNA 2054 ncRNA 262.5-27 chr7 41151665 41152023 + 0.833333 NA Intergenic Intergenic 50240 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 257.167-4 chr16 11606126 11606590 + 0.833333 NA Intergenic AluJb|SINE|Alu -18892 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 192.833-23 chr2 198820798 198821226 + 0.833333 NA Intergenic HAL1|LINE|L1 -445915 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 180.667-38 chr5 121512190 121512476 + 0.833333 NA Intergenic Intergenic 189783 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 199.5-7 chr11 32676999 32677315 + 0.833333 NA intron (NM_001008391, intron 7 of 17) L2a|LINE|L2 93326 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 166.333-12 chr11 66258135 66258671 + 0.833333 NA intron (NM_001318734, intron 1 of 15) CpG 700 NM_001318734 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 209.333-10 chr10 83810424 83810780 + 0.833333 NA Intergenic MIRc|SINE|MIR -133513 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 210.333-24 chr3 35783971 35784387 + 0.833333 NA intron (NM_016300, intron 18 of 19) L2c|LINE|L2 39703 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 178.833-38 chr7 81726453 81726918 + 0.833333 NA intron (NM_001010932, intron 8 of 17) intron (NM_001010932, intron 8 of 17) -35279 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 301.333 chr1 227962014 227962413 + 0.833333 NA Intergenic Intergenic -4798 NR_153418 107985355 Hs.660700 NR_153418 LOC107985355 - uncharacterized LOC107985355 ncRNA 321.333-13 chr6 163556907 163557503 + 0.833333 NA intron (NM_206853, intron 4 of 6) L1ME2|LINE|L1 114279 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 179.667-34 chr4 143539955 143540226 + 0.833333 NA intron (NM_003601, intron 13 of 23) intron (NM_003601, intron 13 of 23) -19382 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 GUSB pseudogene 5 pseudo 248.333-11 chr14 52528047 52528448 + 0.833333 NA intron (NM_020784, intron 6 of 20) intron (NM_020784, intron 6 of 20) 24258 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 209-37 chr7 144391716 144391985 + 0.833333 NA Intergenic Intergenic 18377 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 184.667-28 chr2 99232517 99232778 + 0.833333 NA Intergenic L1PA15-16|LINE|L1 22460 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 179.667-44 chr7 38375335 38375728 + 0.833333 NA intron (NR_040085, intron 3 of 3) intron (NR_040085, intron 3 of 3) 33954 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 351.667-2 chr10 51024459 51024950 + 0.833333 NA intron (NM_001098512, intron 1 of 17) MSTA|LTR|ERVL-MaLR 33816 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 277.5-17 chr5 88780561 88781036 + 0.833333 NA intron (NM_001364333, intron 3 of 9) intron (NM_001364333, intron 3 of 9) 4713 NM_001364353 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 204-30 chr3 155272059 155272447 + 0.833333 NA Intergenic L1PBa|LINE|L1 21430 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 313.833 chr10 5577851 5578512 + 0.833333 NA Intergenic AluSg|SINE|Alu 17937 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LINC02657 - long intergenic non-protein coding RNA 2657 ncRNA 213.833-5 chr12 92562992 92563323 + 0.833333 NA Intergenic Intergenic 96478 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 196.667 chr1 10529526 10529971 + 0.833333 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 54798 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 173-3 chr1 36134659 36134893 + 0.833333 NA Intergenic Intergenic -9554 NM_001294347 1296 Hs.353001 NM_005202 ENSG00000171812 COL8A2 FECD|FECD1|PPCD|PPCD2 collagen type VIII alpha 2 chain protein-coding 168-48 chr7 111568196 111568725 + 0.833333 NA Intergenic LTR16D|LTR|ERVL -5943 NM_001350961 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 172.5-25 chr2 47566902 47567368 + 0.833333 NA intron (NM_022055, intron 1 of 1) intron (NM_022055, intron 1 of 1) 3196 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 252.5-20 chr6 103256557 103256970 + 0.833333 NA Intergenic Intergenic 1602783 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 223.5-11 chr15 68396564 68396912 + 0.833333 NA intron (NM_001004439, intron 2 of 29) L1MEg|LINE|L1 35425 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 259-4 chr1 209870692 209871150 + 0.833333 NA Intergenic LTR37B|LTR|ERV1 42949 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 178.5-22 chr2 40775296 40775546 + 0.833333 NA Intergenic L1MA9|LINE|L1 -262986 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 266.333-21 chr9 114663539 114663898 + 0.833333 NA Intergenic L1MC5|LINE|L1 -5913 NM_001354645 105376230 Hs.147369 NM_001354645 ENSG00000230054 TEX53 - testis expressed 53 protein-coding 268.833-11 chr2 85010419 85010791 + 0.833333 NA intron (NM_020122, intron 1 of 6) MER3|DNA|hAT-Charlie 39444 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 199-48 chr7 30152394 30152688 + 0.833333 NA intron (NM_152793, intron 2 of 2) intron (NM_152793, intron 2 of 2) 17555 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 182.833-30 chr5 98863137 98863578 + 0.833333 NA intron (NR_157079, intron 31 of 34) (A)n|Simple_repeat|Simple_repeat 63177 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 230.333-17 chr19 37204170 37204740 + 0.833333 NA intron (NM_152279, intron 2 of 4) MER90a|LTR|ERV1 6081 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 187.5-18 chr15 70762089 70762448 + 0.833333 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) 1290 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 186-29 chr3 16833529 16833771 + 0.833333 NA Intergenic Intergenic -51305 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 238.167-16 chr19 7283674 7284080 + 0.833333 NA intron (NM_001079817, intron 1 of 20) Tigger17a|DNA|TcMar-Tigger 10537 NM_001079817 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 207.667-46 chr9 69995059 69995382 + 0.833333 NA Intergenic Intergenic -48361 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 169.333-26 chr16 56092241 56092577 + 0.833333 NA TTS (NR_027078) TTS (NR_027078) 98685 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 173.667-9 chr11 72957689 72958002 + 0.833333 NA intron (NM_014824, intron 8 of 19) L1MC4|LINE|L1 143434 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 195.5-20 chr2 161946784 161947116 + 0.833333 NA intron (NM_001354443, intron 16 of 25) intron (NM_001354443, intron 16 of 25) 127265 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 217.667-2 chr1 93245959 93246773 + 0.833333 NA intron (NM_001306076, intron 22 of 28) intron (NM_001306076, intron 22 of 28) 65650 NM_001306076 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 288.333-7 chr16 14175028 14175469 + 0.833333 NA intron (NM_001308142, intron 3 of 16) L1ME2z|LINE|L1 -11438 NM_001365411 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 251.333-15 chr17 75325759 75326218 + 0.833333 NA exon (NM_002086, exon 4 of 6) exon (NM_002086, exon 4 of 6) -36539 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 168.333-23 chr15 64577698 64577971 + 0.833333 NA intron (NM_015042, intron 1 of 8) AluSq|SINE|Alu 78414 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 187-15 chr2 14704803 14705279 + 0.833333 NA Intergenic Intergenic 72324 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 211.667-38 chr6 64165482 64165865 + 0.833333 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 358837 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 208.167-17 chr3 56076973 56077287 + 0.833333 NA intron (NR_132749, intron 7 of 17) intron (NR_132749, intron 7 of 17) -224536 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 208.667-49 chrX 84140777 84141203 + 0.833333 NA intron (NM_014496, intron 6 of 21) L1ME1|LINE|L1 46945 NM_001330512 27330 Hs.234478 NM_014496 ENSG00000072133 RPS6KA6 PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6 ribosomal protein S6 kinase A6 protein-coding 170.333-7 chr10 102401742 102402037 + 0.833333 NA TTS (NM_001270966) TTS (NM_001270966) 6184 NM_001322934 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 195-23 chr18 66049513 66050005 + 0.833333 NA Intergenic Intergenic 298747 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 168.833-22 chr7 140811281 140811507 + 0.833333 NA intron (NR_148928, intron 3 of 17) LTR55|LTR|ERVL? 113535 NM_001354609 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 202.667-10 chr14 67059179 67059521 + 0.833333 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -130090 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 167.167-3 chr1 32026246 32026468 + 0.833333 NA intron (NR_073498, intron 1 of 8) AluJo|SINE|Alu 12489 NR_073498 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 164.5-11 chr11 107840261 107840604 + 0.833333 NA intron (NM_017515, intron 1 of 7) intron (NM_017515, intron 1 of 7) 18355 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 233.833-17 chr5 109863747 109864057 + 0.833333 NA intron (NM_002372, intron 20 of 21) intron (NM_002372, intron 20 of 21) -19280 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 232.5-11 chr17 44053931 44054505 + 0.833333 NA intron (NM_001369486, intron 1 of 3) intron (NM_001369486, intron 1 of 3) 12453 NM_001369484 124801 Hs.355570 NM_152344 ENSG00000161654 LSM12 PNAS-135 LSM12 homolog protein-coding 170-34 chr21 19179723 19180086 + 0.833333 NA Intergenic Intergenic -420092 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 235.833-11 chr20 61185898 61186347 + 0.833333 NA Intergenic Intergenic -66139 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 168.667-7 chr11 67607539 67607812 + 0.833333 NA promoter-TSS (NR_130935) promoter-TSS (NR_130935) 739 NM_007103 4723 Hs.7744 NM_007103 ENSG00000167792 NDUFV1 CI-51K|CI51KD|MC1DN4|UQOR1 NADH:ubiquinone oxidoreductase core subunit V1 protein-coding 192.333-54 chr9 101673618 101674025 + 0.833333 NA intron (NM_133445, intron 2 of 8) L2c|LINE|L2 64759 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 170.5-39 chr6 137002411 137002650 + 0.833333 NA intron (NM_001278724, intron 5 of 5) intron (NM_001278724, intron 5 of 5) -9299 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 259.167-17 chr9 128127834 128128211 + 0.833333 NA promoter-TSS (NM_025072) promoter-TSS (NM_025072) 166 NM_001256335 80142 Hs.495219 NM_025072 ENSG00000148334 PTGES2 C9orf15|GBF-1|GBF1|PGES2|mPGES-2 prostaglandin E synthase 2 protein-coding 179-10 chr11 91291796 91292191 + 0.833333 NA Intergenic Intergenic -422791 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 163.167-35 chr5 30037816 30038051 + 0.833333 NA Intergenic L1MA9|LINE|L1 157373 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 302.667-2 chr11 127017236 127017730 + 0.833333 NA Intergenic Intergenic 14573 NR_040078 283165 Hs.730461 NM_173579 ENSG00000218109 KIRREL3-AS3 NCRNA00288|PRR10 KIRREL3 antisense RNA 3 ncRNA 298.5-8 chr14 68987594 68987992 + 0.833333 NA TTS (NR_073422) TTS (NR_073422) 8111 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 189.833-11 chr19 1772924 1773355 + 0.833333 NA intron (NM_001080488, intron 1 of 1) HAL1|LINE|L1 19633 NM_001080488 390874 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 200.5-33 chr3 158434265 158434631 + 0.833333 NA intron (NM_001271838, intron 6 of 9) intron (NM_001271838, intron 6 of 9) -92260 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 218.5-4 chr10 65485808 65486150 + 0.833333 NA Intergenic L1M5|LINE|L1 -85446 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 213.833-8 chr14 73824131 73824616 + 0.833333 NA intron (NR_135238, intron 1 of 1) intron (NR_135238, intron 1 of 1) 5762 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 217.333 chr1 53550927 53551315 + 0.833333 NA intron (NM_147193, intron 3 of 9) AluSx1|SINE|Alu 91722 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 244.333-34 chr7 105219448 105219926 + 0.833333 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 49390 NM_001350744 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 176-46 chrX 51487812 51488214 + 0.833333 NA Intergenic Intergenic 8579 NM_018159 55190 Hs.200016 NM_018159 ENSG00000196368 NUDT11 APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta nudix hydrolase 11 protein-coding 190.667-51 chr6 67577529 67578091 + 0.833333 NA Intergenic Intergenic -477541 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 247.333-26 chr9 75643284 75643657 + 0.833333 NA Intergenic L1M5|LINE|L1 -247174 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 205.167-28 chrX 81201588 81202014 + 0.833333 NA promoter-TSS (NM_003022) promoter-TSS (NM_003022) 112 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 389.5-6 chr6 51854813 51855761 + 0.833333 NA intron (NM_138694, intron 49 of 66) L1PA8A|LINE|L1 232326 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 187.333-18 chr13 77062154 77062378 + 0.833333 NA intron (NM_015057, intron 74 of 82) intron (NM_015057, intron 74 of 82) -13248 NR_046716 100874212 Hs.569288 NR_046716 ENSG00000236051 MYCBP2-AS1 - MYCBP2 antisense RNA 1 ncRNA 178.167-12 chr2 67517022 67517384 + 0.833333 NA Intergenic Intergenic 119870 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 212.167-10 chr21 29129100 29129408 + 0.833333 NA intron (NM_001371376, intron 1 of 3) L1MC2|LINE|L1 -1390 NM_001286620 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 254.5-4 chr11 111829562 111829917 + 0.833333 NA intron (NR_147984, intron 13 of 15) intron (NR_147984, intron 13 of 15) 41542 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 242-9 chr14 21711179 21711506 + 0.833333 NA Intergenic Intergenic -40325 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 240.333-20 chr5 93161583 93161966 + 0.833333 NA Intergenic Intergenic 409569 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 184.667-13 chr12 65500299 65500558 + 0.833333 NA intron (NR_120431, intron 2 of 3) intron (NR_120431, intron 2 of 3) 56883 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 168.5-18 chr14 91419086 91419386 + 0.833333 NA Intergenic Intergenic -1416 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|HYC1|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 244-19 chr20 15930524 15930978 + 0.833333 NA intron (NR_130924, intron 1 of 1) intron (NR_130924, intron 1 of 1) -7437 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 214-50 chr8 78621206 78621568 + 0.833333 NA Intergenic L1MC3|LINE|L1 -44702 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 202.333-4 chr1 187284411 187284653 + 0.833333 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -159096 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 251.167-9 chr17 73998859 73999289 + 0.833333 NA Intergenic Intergenic -170537 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 245-8 chr12 33684840 33685176 + 0.833333 NA Intergenic MER4A|LTR|ERV1 -245189 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 199.5-50 chr9 112945270 112945596 + 0.833333 NA Intergenic Intergenic -54557 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 172-5 chr10 89259430 89259703 + 0.833333 NA Intergenic L1ME2|LINE|L1 -7527 NM_001288979 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 185-6 chr1 205298537 205298989 + 0.833333 NA Intergenic Intergenic 22982 NM_030952 81788 Hs.497512 NM_030952 ENSG00000163545 NUAK2 SNARK NUAK family kinase 2 protein-coding 202.667-25 chr20 6798761 6799140 + 0.833333 NA Intergenic Intergenic 31264 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 294.333-16 chr6 126691864 126692339 + 0.833333 NA Intergenic L1MB8|LINE|L1 207470 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 311 chr1 71295489 71296122 + 0.833333 NA Intergenic MER117|DNA|hAT-Charlie 214481 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 190.5-17 chr14 59088324 59088918 + 0.833333 NA Intergenic LTR86B1|LTR|ERVL -100046 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 197.167-21 chr2 36026793 36027034 + 0.833333 NA Intergenic Intergenic 328657 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 184.833-19 chr20 54026661 54026934 + 0.833333 NA intron (NM_001366297, intron 4 of 8) L2b|LINE|L2 32223 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 243.833-10 chr12 109385687 109386140 + 0.833333 NA Intergenic L1ME2|LINE|L1 -2806 NM_001101421 283446 Hs.512008 NM_173597 ENSG00000174527 MYO1H - myosin IH protein-coding 166.667-16 chr14 70807847 70808186 + 0.833333 NA intron (NM_033141, intron 1 of 12) intron (NM_033141, intron 1 of 12) 1155 NM_001284230 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 170.833-22 chr22 26709562 26709809 + 0.833333 NA intron (NR_110543, intron 1 of 5) intron (NR_110543, intron 1 of 5) 36842 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 187.167-27 chr7 42940162 42940454 + 0.833333 NA Intergenic Intergenic 7932 NR_156497 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 199.5-12 chr12 118239484 118240072 + 0.833333 NA intron (NM_001346490, intron 5 of 21) intron (NM_001346490, intron 5 of 21) -49243 NM_001346496 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 203-8 chr11 81435057 81435555 + 0.833333 NA Intergenic Intergenic 455530 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 202.167-10 chr12 96400273 96400592 + 0.833333 NA promoter-TSS (NM_001170464) promoter-TSS (NM_001170464) 7 NM_001170464 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 173.333-22 chr3 65946426 65946799 + 0.833333 NA intron (NR_145422, intron 1 of 2) intron (NR_145422, intron 1 of 2) 7946 NR_145422 151877 Hs.476636 NR_145422 ENSG00000272610 MAGI1-IT1 - MAGI1 intronic transcript 1 ncRNA 306.5-15 chr3 191802647 191803228 + 0.833333 NA Intergenic L1MB3|LINE|L1 341774 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 176.667-23 chr19 41454727 41454969 + 0.833333 NA non-coding (NR_136334, exon 3 of 3) non-coding (NR_136334, exon 3 of 3) 11692 NM_001130514 100170765 Hs.649452 NM_001130514 ENSG00000204978 ERICH4 C19orf69 glutamate rich 4 protein-coding 254-19 chr4 125911058 125911530 + 0.833333 NA Intergenic Intergenic 404035 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 249-5 chr12 124939077 124939561 + 0.833333 NA Intergenic MIRb|SINE|MIR 23772 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 184.333-18 chr17 79961193 79961559 + 0.833333 NA intron (NM_019020, intron 3 of 11) L1ME1|LINE|L1 -10523 NM_001271845 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 177.167-4 chr10 94401424 94401674 + 0.833333 NA promoter-TSS (NM_015188) promoter-TSS (NM_015188) -992 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 176.167 chr1 28010336 28010584 + 0.833333 NA intron (NM_001282562, intron 9 of 16) AluJo|SINE|Alu 50998 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 200.333-12 chr12 117507277 117507605 + 0.833333 NA intron (NM_173598, intron 14 of 19) intron (NM_173598, intron 14 of 19) -145639 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 174.667-6 chr1 208220624 208221152 + 0.833333 NA intron (NM_025179, intron 1 of 31) intron (NM_025179, intron 1 of 31) 23496 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 176.667-3 chr1 93201923 93202166 + 0.833333 NA intron (NM_001306076, intron 7 of 28) intron (NM_001306076, intron 7 of 28) 21328 NM_001306076 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 171-24 chr17 58219298 58219659 + 0.833333 NA promoter-TSS (NM_001330397) promoter-TSS (NM_001330397) 127 NM_001165927 54903 Hs.408843 NM_017777 ENSG00000011143 MKS1 BBS13|JBTS28|MES|MKS|POC12 MKS transition zone complex subunit 1 protein-coding 243.333-38 chr6 37256019 37256368 + 0.833333 NA intron (NM_145316, intron 1 of 3) CR1_Mam|LINE|CR1 1406 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 172.5-13 chr14 51706126 51706592 + 0.833333 NA intron (NM_001042481, intron 7 of 14) intron (NM_001042481, intron 7 of 14) -10924 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 298.167-13 chr8 28669488 28670037 + 0.833333 NA Intergenic Intergenic 31702 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 166.333-26 chr18 787786 788213 + 0.833333 NA intron (NM_005433, intron 1 of 11) intron (NM_005433, intron 1 of 11) 24243 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 234.833-5 chr11 102897482 102897820 + 0.833333 NA Intergenic Intergenic -22669 NM_002426 4321 Hs.1695 NM_002426 ENSG00000262406 MMP12 HME|ME|MME|MMP-12 matrix metallopeptidase 12 protein-coding 183.667-22 chr17 64409731 64410080 + 0.833333 NA Intergenic AluJb|SINE|Alu -19045 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 227.667-30 chr3 27570622 27571263 + 0.833333 NA Intergenic LTR16C|LTR|ERVL -86558 NR_135541 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 222.333-2 chr1 150268827 150269234 + 0.833333 NA promoter-TSS (NM_001077628) promoter-TSS (NM_001077628) -14 NM_001077628 51107 Hs.108408 NM_016022 ENSG00000117362 APH1A 6530402N02Rik|APH-1|APH-1A|CGI-78 aph-1 homolog A, gamma-secretase subunit protein-coding 218-2 chr1 181033656 181034167 + 0.833333 NA 5' UTR (NM_001194999, exon 2 of 7) 5' UTR (NM_001194999, exon 2 of 7) 486 NM_001195035 3140 Hs.13500 NM_001531 ENSG00000153029 MR1 HLALS major histocompatibility complex, class I-related protein-coding 269.5 chr1 83858098 83858463 + 0.833333 NA intron (NR_119374, intron 1 of 2) intron (NR_119374, intron 1 of 2) 2266 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 412.167-2 chr2 46067671 46068432 + 0.833333 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -229356 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 228.167-11 chr14 68695150 68695546 + 0.833333 NA Intergenic Intergenic -66561 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 163.5-8 chr12 8075777 8076067 + 0.833333 NA Intergenic Intergenic -6289 NR_024260 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 205.5-16 chr14 72894238 72894546 + 0.833333 NA promoter-TSS (NM_012074) promoter-TSS (NM_012074) -276 NM_001280542 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 235.833-5 chr12 13545278 13545826 + 0.833333 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -168807 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 250.833-3 chr11 12681080 12681576 + 0.833333 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 6907 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 267.167-18 chrX 110167814 110168271 + 0.833333 NA intron (NM_001353850, intron 5 of 7) intron (NM_001353850, intron 5 of 7) 57018 NR_004379 692226 NR_004379 ENSG00000208883 SNORD96B U96b small nucleolar RNA, C/D box 96B snoRNA 188.667-12 chr12 59780704 59780966 + 0.833333 NA non-coding (NR_073056, exon 7 of 7) non-coding (NR_073056, exon 7 of 7) 91465 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 163.667-48 chr5 149354291 149354699 + 0.833333 NA TTS (NM_152407) TTS (NM_152407) 3147 NR_132366 106144529 Hs.607162 NR_132366 ENSG00000253618 GRPEL2-AS1 - GRPEL2 antisense RNA 1 ncRNA 169.167-36 chrX 72018468 72018688 + 0.833333 NA intron (NM_001013627, intron 1 of 7) CpG -25831 NR_002309 441502 Hs.449523 NR_002309 RPS26P11 RPS26L1|RPS26_22_1784|bA366E13.1 ribosomal protein S26 pseudogene 11 pseudo 194.167-10 chr12 47247524 47247863 + 0.833333 NA Intergenic Intergenic -31250 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 194.167-7 chr10 96263875 96264360 + 0.833333 NA intron (NM_013314, intron 1 of 16) MamRep605|LTR?|LTR? 7399 NR_047683 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 222-19 chr2 60246334 60246949 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR 136395 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 306.333-8 chr6 18823566 18824031 + 0.833333 NA Intergenic Intergenic 252014 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 358.833-11 chr5 167899183 167899720 + 0.833333 NA intron (NM_001368145, intron 2 of 26) MIR|SINE|MIR 144522 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 208.667-40 chr6 130238960 130239449 + 0.833333 NA intron (NM_001258275, intron 2 of 13) MIR3|SINE|MIR -16253 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 293-15 chr3 154761827 154762381 + 0.833333 NA Intergenic MamTip3|DNA|hAT-Tip100 -262020 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 205.5-27 chr4 75713840 75714238 + 0.833333 NA Intergenic L1MC4|LINE|L1 -10483 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 169-11 chr11 101204123 101204347 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -74422 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 167.5-36 chr6 67769552 67769786 + 0.833333 NA Intergenic Intergenic -285682 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 278.333-11 chr17 71083814 71084243 + 0.833333 NA Intergenic MER91B|DNA|hAT-Tip100 118151 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 182.167-8 chr15 71883839 71884203 + 0.833333 NA intron (NM_006901, intron 27 of 41) MIRb|SINE|MIR 73467 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 195.5-39 chr9 27152101 27152529 + 0.833333 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 43174 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 237.167-11 chr2 5071758 5072303 + 0.833333 NA Intergenic Intergenic -415808 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 229.5-19 chr2 189501608 189502015 + 0.833333 NA Intergenic Intergenic 60337 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 174-50 chr9 79512405 79512916 + 0.833333 NA Intergenic L2c|LINE|L2 -59113 NM_001282753 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 196-3 chr10 56146977 56147332 + 0.833333 NA Intergenic L1MCb|LINE|L1 214105 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 226.833 chr1 39824521 39825107 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 35838 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 224.667-8 chr10 101469186 101469557 + 0.833333 NA intron (NM_003939, intron 2 of 13) intron (NM_003939, intron 2 of 13) 115206 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 291.833-10 chr5 6799846 6800518 + 0.833333 NA intron (NR_146281, intron 1 of 1) L1MEg|LINE|L1 4302 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 196.5-10 chr13 61286514 61286776 + 0.833333 NA Intergenic Intergenic -86765 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 177.667-41 chr8 48912424 48912782 + 0.833333 NA Intergenic MIRb|SINE|MIR 8826 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 238.667-25 chr7 5514326 5514796 + 0.833333 NA promoter-TSS (NM_001367781) promoter-TSS (NM_001367781) 707 NR_126168 221946 Hs.385633 NR_126168 LOC221946 - uncharacterized LOC221946 ncRNA 322.667-25 chr9 115594118 115594735 + 0.833333 NA Intergenic MIRc|SINE|MIR 149813 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 176.667-36 chr3 1780009 1780420 + 0.833333 NA Intergenic Intergenic -318589 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 197.833-6 chr10 63462841 63463165 + 0.833333 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -2226 NR_027182 84989 Hs.659950 NM_032903 ENSG00000272767 JMJD1C-AS1 - JMJD1C antisense RNA 1 ncRNA 228.5-31 chr6 132014557 132015047 + 0.833333 NA Intergenic Intergenic -63430 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 305.167-2 chr10 50604636 50605251 + 0.833333 NA intron (NM_147156, intron 1 of 10) intron (NM_147156, intron 1 of 10) 19013 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 254.833-17 chr5 104262195 104262608 + 0.833333 NA Intergenic L1MC1|LINE|L1 -699612 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 180.333-58 chr9 92846461 92846730 + 0.833333 NA exon (NM_031486, exon 5 of 5) exon (NM_031486, exon 5 of 5) 31373 NM_001354536 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 211.667-28 chr3 155352036 155352550 + 0.833333 NA Intergenic Intergenic -58610 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 267.667-17 chr6 155026633 155027088 + 0.833333 NA Intergenic Intergenic -63429 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 203.167-19 chr21 23097415 23097910 + 0.833333 NA Intergenic MER61F|LTR|ERV1 18378 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 176.333-26 chr4 27573121 27573672 + 0.833333 NA Intergenic Intergenic 355917 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 192.167-31 chr6 157320057 157320348 + 0.833333 NA intron (NM_018452, intron 2 of 3) intron (NM_018452, intron 2 of 3) 4057 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 166.167-26 chr3 131347270 131347620 + 0.833333 NA intron (NR_038976, intron 2 of 3) intron (NR_038976, intron 2 of 3) -14400 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 302-2 chr1 101875836 101876413 + 0.833333 NA intron (NR_033424, intron 1 of 1) intron (NR_033424, intron 1 of 1) 4112 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 163.833-6 chr11 73778804 73779223 + 0.833333 NA Intergenic L1MB4|LINE|L1 -8861 NM_016055 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 200.833-3 chr1 108593460 108593757 + 0.833333 NA intron (NM_001010883, intron 1 of 10) intron (NM_001010883, intron 1 of 10) 33508 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 164.333-11 chr12 541918 542198 + 0.833333 NA intron (NM_173593, intron 3 of 19) intron (NM_173593, intron 3 of 19) 44428 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 166-26 chr14 61730229 61730498 + 0.833333 NA intron (NM_181054, intron 6 of 13) intron (NM_181054, intron 6 of 13) 18726 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 237 chr1 30889199 30889822 + 0.833333 NA intron (NM_014654, intron 1 of 4) intron (NM_014654, intron 1 of 4) 19248 NM_014654 9672 Hs.158287 NM_014654 ENSG00000162512 SDC3 SDCN|SYND3 syndecan 3 protein-coding 249.667-21 chr22 19718074 19718442 + 0.833333 NA promoter-TSS (NR_037612) promoter-TSS (NR_037612) -185 NM_001009939 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 209.667-9 chr12 27319274 27319612 + 0.833333 NA intron (NM_015000, intron 12 of 13) intron (NM_015000, intron 12 of 13) -13393 NM_020183 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 165-55 chr9 83069996 83070241 + 0.833333 NA Intergenic L1ME1|LINE|L1 -6976 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 197.333-2 chr1 164127288 164127639 + 0.833333 NA Intergenic L1M7|LINE|L1 -431897 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 184-20 chr12 121688563 121689026 + 0.833333 NA Intergenic AluJo|SINE|Alu -16150 NM_001363685 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 207.167-28 chr8 27133317 27133574 + 0.833333 NA Intergenic L1MDa|LINE|L1 -84482 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 190.5-16 chr14 58292935 58293363 + 0.833333 NA intron (NR_029435, intron 1 of 3) A-rich|Low_complexity|Low_complexity 4988 NR_029435 379025 Hs.531089 NR_029434 ENSG00000257621 PSMA3-AS1 - PSMA3 antisense RNA 1 ncRNA 415-3 chr15 93974873 93975680 + 0.833333 NA non-coding (NR_120320, exon 5 of 9) non-coding (NR_120320, exon 5 of 9) 74575 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 199.667-13 chr14 82305042 82305453 + 0.833333 NA Intergenic L1M5|LINE|L1 -337385 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 185.833-20 chr4 82208928 82209403 + 0.833333 NA Intergenic Intergenic 164826 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 187.667-35 chr5 67022477 67022736 + 0.833333 NA intron (NM_001297651, intron 1 of 25) intron (NM_001297651, intron 1 of 25) 17951 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 219.5-14 chr2 57652499 57652903 + 0.833333 NA Intergenic L1MB8|LINE|L1 -254950 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 260.333-18 chr5 56435755 56436128 + 0.833333 NA Intergenic Intergenic 45828 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 194.667-21 chr14 62979478 62979808 + 0.833333 NA intron (NM_139318, intron 6 of 10) intron (NM_139318, intron 6 of 10) 65815 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 202.333-15 chr15 38563597 38564152 + 0.833333 NA intron (NM_001306086, intron 1 of 14) intron (NM_001306086, intron 1 of 14) 940 NM_001306086 10125 Hs.591127 NM_005739 ENSG00000172575 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP RAS guanyl releasing protein 1 protein-coding 173.167-28 chr3 193485896 193486224 + 0.833333 NA intron (NM_032279, intron 7 of 29) Charlie1a|DNA|hAT-Charlie -67153 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 215.167-8 chr12 2613567 2614025 + 0.833333 NA intron (NM_001129840, intron 29 of 46) intron (NM_001129840, intron 29 of 46) 58424 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 163.333-23 chr15 82064534 82064846 + 0.833333 NA Intergenic Intergenic -18672 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 164-33 chr2 57380599 57381070 + 0.833333 NA Intergenic Intergenic -526817 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 179-20 chr17 51038822 51039139 + 0.833333 NA intron (NM_001130528, intron 5 of 29) intron (NM_001130528, intron 5 of 29) 7898 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 250 chr1 180903021 180903416 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -9679 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 214.5-28 chr4 174458955 174459402 + 0.833333 NA Intergenic L1MA9|LINE|L1 35383 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 196.167-27 chr3 86616048 86616318 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR 134240 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 188.667-38 chr4 110586473 110586835 + 0.833333 NA Intergenic Intergenic 28804 NR_147203 110231149 Hs.436030 NR_147203 ENSG00000250103 PANCR - PITX2 adjacent non-coding RNA ncRNA 189.333-7 chr11 131920344 131920651 + 0.833333 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) 9679 NR_147851 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 259.833-13 chr22 34171914 34172404 + 0.833333 NA Intergenic MIRc|SINE|MIR -249271 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 174.5-19 chr2 104787710 104788030 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -30151 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 187-47 chr8 118510472 118510711 + 0.833333 NA intron (NM_001101676, intron 2 of 4) MER91C|DNA|hAT-Tip100 -110410 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 199.667-42 chr6 152995859 152996187 + 0.833333 NA intron (NM_001301870, intron 2 of 6) intron (NM_001301870, intron 2 of 6) 6686 NM_001114184 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 498.333-3 chr7 22822470 22823402 + 0.833333 NA promoter-TSS (NM_019059) promoter-TSS (NM_019059) -87 NM_019059 54543 Hs.112318 NM_019059 ENSG00000196683 TOMM7 TOM7 translocase of outer mitochondrial membrane 7 protein-coding 344.667-4 chr11 11731933 11732448 + 0.833333 NA Intergenic Intergenic 51032 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 191.833-23 chr6 75205411 75205736 + 0.833333 NA intron (NM_080645, intron 1 of 50) CpG 480 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 206.5-56 chr8 66522369 66522931 + 0.833333 NA Intergenic Intergenic 29084 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 273.667-21 chr9 34042794 34043170 + 0.833333 NA intron (NM_001370059, intron 1 of 28) AluJo|SINE|Alu 5905 NM_001370066 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 208.833-32 chr8 122422520 122422873 + 0.833333 NA intron (NR_131202, intron 2 of 3) L2c|LINE|L2 145948 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 182.167-23 chr4 83112909 83113214 + 0.833333 NA intron (NM_001130715, intron 1 of 3) MER5A|DNA|hAT-Charlie 1668 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 180.167-16 chr5 38422498 38422853 + 0.833333 NA intron (NM_182798, intron 7 of 16) Charlie4a|DNA|hAT-Charlie 19134 NM_182798 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 169.667-4 chr1 170602844 170603223 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -61098 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 285.667-4 chr1 220564641 220565104 + 0.833333 NA intron (NM_018650, intron 1 of 17) intron (NM_018650, intron 1 of 17) 36689 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 272-16 chr14 91150811 91151321 + 0.833333 NA intron (NM_001286470, intron 4 of 16) L1MB3|LINE|L1 24640 NR_003709 100124539 Hs.693444 NR_003709 ENSG00000221102 SNORA11B - small nucleolar RNA, H/ACA box 11B snoRNA 199-30 chr22 40942288 40942604 + 0.833333 NA Intergenic L1MDa|LINE|L1 -8932 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 182.667-3 chr1 105827850 105828181 + 0.833333 NA Intergenic L1MA7|LINE|L1 200238 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 205.333-44 chr7 128208202 128208597 + 0.833333 NA TTS (NR_029596) TTS (NR_029596) 527 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 210.833-2 chr10 16061887 16062223 + 0.833333 NA Intergenic L1MCa|LINE|L1 -201522 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 278.5-23 chrX 95636190 95636671 + 0.833333 NA Intergenic Intergenic -573204 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 223.333-10 chr10 114787984 114788645 + 0.833333 NA Intergenic SVA_D|Retroposon|SVA -20010 NM_001322884 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 169-15 chr14 81559382 81559618 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -25639 NM_001244984 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 194.667-43 chr4 90226743 90227023 + 0.833333 NA intron (NM_001145065, intron 1 of 10) LTR16B1|LTR|ERVL -8148 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 196.333-16 chr14 65047310 65047633 + 0.833333 NA intron (NM_002028, intron 9 of 11) L1ME4b|LINE|L1 2783 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 219.5-29 chr6 134464931 134465337 + 0.833333 NA intron (NR_038216, intron 2 of 2) intron (NR_038216, intron 2 of 2) 13763 NR_125852 101928231 Hs.634168 NR_125852 CT69 - cancer/testis associated transcript 69 ncRNA 214.167-13 chr2 94948798 94949336 + 0.833333 NA Intergenic L1ME1|LINE|L1 -1725 NR_037597 442028 Hs.611545 NR_037597 ENSG00000259848 LOC442028 - uncharacterized LOC442028 ncRNA 300.5-27 chr9 36748179 36748701 + 0.833333 NA Intergenic Intergenic 75159 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 203.333-16 chr12 8912181 8912472 + 0.833333 NA Intergenic Intergenic -2183 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 249.333-26 chr6 28318754 28319242 + 0.833333 NA Intergenic AluSc|SINE|Alu 17136 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 224-5 chr1 224652479 224653039 + 0.833333 NA intron (NM_152495, intron 1 of 5) intron (NM_152495, intron 1 of 5) 36442 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 214-19 chr15 71159597 71159892 + 0.833333 NA intron (NM_024817, intron 2 of 16) L1MA6|LINE|L1 18295 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 172.167-26 chr6 131921341 131921837 + 0.833333 NA Intergenic L1MA1|LINE|L1 29783 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 167.833-17 chr15 63273623 63274000 + 0.833333 NA Intergenic MIR3|SINE|MIR -3739 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 255-37 chr8 18666505 18666993 + 0.833333 NA intron (NM_015310, intron 9 of 15) intron (NM_015310, intron 9 of 15) 142118 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 213.5-27 chr5 129769518 129769924 + 0.833333 NA Intergenic Intergenic 21627 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 350.167-15 chrX 134105531 134106267 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR 63553 NR_029852 574031 NR_029852 ENSG00000284499 MIR363 MIR-363|MIRN363|hsa-mir-363 microRNA 363 ncRNA 206-17 chr16 54373653 54374039 + 0.833333 NA Intergenic Intergenic -3147 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 209.667-32 chr4 94485529 94485824 + 0.833333 NA intron (NM_001256428, intron 2 of 11) AluSx4|SINE|Alu 33734 NM_001256429 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 171-23 chr16 72365608 72365961 + 0.833333 NA intron (NR_126330, intron 8 of 13) intron (NR_126330, intron 8 of 13) -193334 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 297.833-9 chr8 126820320 126820939 + 0.833333 NA Intergenic LTR1|LTR|ERV1 -192525 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 261.167-16 chr4 64382052 64382560 + 0.833333 NA intron (NM_001363796, intron 1 of 11) (TA)n|Simple_repeat|Simple_repeat 27144 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 165.167-33 chr4 112288884 112289169 + 0.833333 NA Intergenic Intergenic -3122 NM_052864 92610 Hs.310640 NM_052864 ENSG00000145365 TIFA T2BP|T6BP|TIFAA TRAF interacting protein with forkhead associated domain protein-coding 250.667-34 chr5 118473686 118474040 + 0.833333 NA intron (NR_104610, intron 5 of 9) MIR|SINE|MIR 88254 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 291.333-6 chr14 50232124 50232866 + 0.833333 NA promoter-TSS (NM_006939) promoter-TSS (NM_006939) -917 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 189.167-4 chr10 101882771 101883052 + 0.833333 NA intron (NM_024541, intron 24 of 25) Charlie4z|DNA|hAT-Charlie -38991 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 183.5-22 chr20 9092603 9093035 + 0.833333 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 23765 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 229.5-37 chr7 6699374 6699676 + 0.833333 NA intron (NM_006956, intron 2 of 5) LTR86C|LTR|ERVL 7422 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 322.5 chr1 159797427 159798047 + 0.833333 NA Intergenic L2c|LINE|L2 -2775 NM_001284217 343413 Hs.196955 NM_001004310 ENSG00000181036 FCRL6 FcRH6 Fc receptor like 6 protein-coding 239.5-34 chr7 1980774 1981146 + 0.833333 NA intron (NM_001013837, intron 14 of 18) intron (NM_001013837, intron 14 of 18) -40389 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 291.167-11 chr3 14328253 14328656 + 0.833333 NA Intergenic L1ME3E|LINE|L1 24114 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 191.667-32 chr3 20184731 20185093 + 0.833333 NA intron (NM_001012409, intron 1 of 7) intron (NM_001012409, intron 1 of 7) 1294 NM_001012410 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 167.167-2 chr1 27318161 27318598 + 0.833333 NA Intergenic L2c|LINE|L2 -3766 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 168-16 chr14 20968908 20969261 + 0.833333 NA Intergenic Intergenic 13597 NM_002934 6036 Hs.728 NM_002934 ENSG00000169385 RNASE2 EDN|RAF3|RNS2 ribonuclease A family member 2 protein-coding 227-10 chr12 77059012 77059577 + 0.833333 NA intron (NM_203394, intron 2 of 12) intron (NM_203394, intron 2 of 12) 6275 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 201.5-8 chr12 9690318 9690823 + 0.833333 NA intron (NR_036693, intron 3 of 3) L1M4|LINE|L1 20857 NM_001197317 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 165-36 chr3 113577295 113577666 + 0.833333 NA intron (NR_136285, intron 4 of 20) intron (NR_136285, intron 4 of 20) -17396 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 239.5-2 chr1 209059151 209059585 + 0.833333 NA Intergenic Intergenic 86914 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 194.667-27 chr17 68741586 68742045 + 0.833333 NA Intergenic L1ME3|LINE|L1 113661 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 317.167-6 chr12 66024619 66025286 + 0.833333 NA Intergenic Intergenic -1226 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 188.667-16 chr16 55704989 55705432 + 0.833333 NA intron (NM_001172504, intron 13 of 13) intron (NM_001172504, intron 13 of 13) -19715 NR_033740 390732 Hs.554599 NR_033740 CES1P2 - carboxylesterase 1 pseudogene 2 pseudo 180.5-18 chr19 52466386 52466679 + 0.833333 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 12979 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 183.667-38 chr3 85700794 85701188 + 0.833333 NA intron (NM_001256503, intron 2 of 9) MSTA|LTR|ERVL-MaLR -25491 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 251.5-6 chr10 131885441 131885797 + 0.833333 NA Intergenic Intergenic -15389 NR_033191 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 259.333-29 chr7 28092467 28092931 + 0.833333 NA intron (NM_175061, intron 1 of 4) AluJb|SINE|Alu -87758 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 255.167-7 chr10 43965381 43965838 + 0.833333 NA intron (NR_033846, intron 6 of 7) intron (NR_033846, intron 6 of 7) 53207 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 179.333-49 chr8 98970737 98971029 + 0.833333 NA Intergenic Intergenic 26441 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 192.167-24 chr22 21643183 21643452 + 0.833333 NA intron (NM_022044, intron 2 of 2) L2c|LINE|L2 1015 NM_022044 23753 Hs.303116 NM_022044 ENSG00000128228 SDF2L1 - stromal cell derived factor 2 like 1 protein-coding 197.833-23 chr3 59877287 59877784 + 0.833333 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) 203374 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 272.667-20 chr5 68113621 68114006 + 0.833333 NA Intergenic MSTB2|LTR|ERVL-MaLR -76063 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 268.5-13 chr16 29848728 29849100 + 0.833333 NA TTS (NM_001293205) TTS (NM_001293205) 14312 NM_001286585 10423 Hs.121549 NM_006319 ENSG00000103502 CDIPT PIS|PIS1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase protein-coding 239-5 chr12 58530130 58530743 + 0.833333 NA Intergenic Intergenic -61266 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 342.333-9 chr8 30666817 30667389 + 0.833333 NA Intergenic Intergenic -8867 NM_002095 2961 Hs.77100 NM_002095 ENSG00000197265 GTF2E2 FE|TF2E2|TFIIE-B|TTD6 general transcription factor IIE subunit 2 protein-coding 216.333-33 chr5 37771359 37771849 + 0.833333 NA Intergenic Intergenic 63218 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 170.667-41 chr6 38773596 38774063 + 0.833333 NA intron (NM_001371, intron 11 of 91) intron (NM_001371, intron 11 of 91) 58518 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 184.833-14 chr15 98648927 98649260 + 0.833333 NA non-coding (NR_126453, exon 1 of 1) non-coding (NR_126453, exon 1 of 1) 554 NM_001291858 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 199.167-21 chr3 186271941 186272373 + 0.833333 NA intron (NM_001346, intron 11 of 24) intron (NM_001346, intron 11 of 24) 90077 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 226.667-13 chr12 51089921 51090249 + 0.833333 NA Intergenic Intergenic -6489 NR_045072 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 262-13 chr2 95210906 95211404 + 0.833333 NA Intergenic Intergenic 45346 NM_001282398 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 242.833-13 chr22 25678266 25678833 + 0.833333 NA intron (NM_001362778, intron 7 of 19) intron (NM_001362778, intron 7 of 19) -63639 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 194-10 chr11 14708403 14708770 + 0.833333 NA intron (NM_000922, intron 1 of 15) L1MC4|LINE|L1 64782 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 243.833-8 chr11 35639447 35639835 + 0.833333 NA Intergenic Intergenic 21181 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 307.667-14 chr4 41291154 41291831 + 0.833333 NA Intergenic AluSx4|SINE|Alu 34564 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 210-43 chr8 13019561 13019904 + 0.833333 NA intron (NM_020844, intron 4 of 4) intron (NM_020844, intron 4 of 4) 7468 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 167.333-47 chr6 62567848 62568166 + 0.833333 NA Intergenic Intergenic -281780 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 274.333-5 chr10 6087592 6088112 + 0.833333 NA Intergenic L1MC4|LINE|L1 -1182 NM_032905 84991 Hs.498548 NM_032905 ENSG00000134453 RBM17 SPF45 RNA binding motif protein 17 protein-coding 194.667-52 chr7 8364109 8364714 + 0.833333 NA Intergenic Intergenic -69198 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 244.333 chr1 97817879 97818317 + 0.833333 NA intron (NM_000110, intron 3 of 22) intron (NM_000110, intron 3 of 22) 21177 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 295-6 chr12 25155028 25155966 + 0.833333 NA intron (NM_001352067, intron 1 of 10) intron (NM_001352067, intron 1 of 10) 39663 NM_001352066 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 261.667-14 chr18 9344523 9344872 + 0.833333 NA intron (NM_020648, intron 2 of 4) AluJb|SINE|Alu 9924 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 170.667-22 chr2 127409443 127409663 + 0.833333 NA Intergenic Intergenic -8867 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 249.167-11 chr2 97947015 97947587 + 0.833333 NA intron (NM_015348, intron 1 of 40) L1ME1|LINE|L1 48647 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 295-8 chr16 106662 107148 + 0.833333 NA intron (NM_001039476, intron 4 of 10) intron (NM_001039476, intron 4 of 10) 28680 NM_001015052 4350 Hs.459596 NM_002434 ENSG00000103152 MPG AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg N-methylpurine DNA glycosylase protein-coding 199.833-22 chr4 128220532 128220882 + 0.833333 NA intron (NR_146772, intron 19 of 19) intron (NR_146772, intron 19 of 19) 67106 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 164.167-26 chr2 197900275 197900500 + 0.833333 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 95794 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 743.166 chr10 43671563 43672700 + 0.833333 NA intron (NR_038867, intron 3 of 4) MER58B|DNA|hAT-Charlie -23250 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 221.167-31 chrX 75479874 75480307 + 0.833333 NA intron (NM_001146256, intron 1 of 10) intron (NM_001146256, intron 1 of 10) 42947 NM_144969 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 233-5 chr10 60649324 60649863 + 0.833333 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) -76637 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 217.5-16 chr4 63296633 63296966 + 0.833333 NA Intergenic Intergenic 1112651 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 168-54 chr9 120587766 120588002 + 0.833333 NA Intergenic Intergenic -7714 NM_001272039 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 292.667-21 chr9 17430095 17430740 + 0.833333 NA intron (NM_001365029, intron 18 of 25) L1MA4|LINE|L1 -148649 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 325.167 chr1 40182933 40183550 + 0.833333 NA intron (NM_012421, intron 1 of 7) intron (NM_012421, intron 1 of 7) 21854 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 185.833-3 chr10 87860056 87860299 + 0.833333 NA 3' UTR (NM_001126049, exon 1 of 1).2 3' UTR (NM_001126049, exon 1 of 1).2 3260 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53 regulated DNA replication inhibitor protein-coding 246.167-14 chr19 51534661 51535072 + 0.833333 NA Intergenic L1MA4A|LINE|L1 -3196 NM_001177548 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 283.833-12 chr5 10478467 10478860 + 0.833333 NA TTS (NR_106747) TTS (NR_106747) 626 NR_106747 102465138 NR_106747 ENSG00000277073 MIR6131 hsa-mir-6131 microRNA 6131 ncRNA 209.5-29 chr5 90473286 90473746 + 0.833333 NA promoter-TSS (NM_001370354) promoter-TSS (NM_001370354) -413 NM_001370354 10622 Hs.282387 NM_006467 ENSG00000113356 POLR3G RPC32|RPC7 RNA polymerase III subunit G protein-coding 233.167-19 chr6 108835151 108835471 + 0.833333 NA Intergenic Intergenic -13105 NM_001286609 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 213.833-3 chr1 115274889 115275267 + 0.833333 NA Intergenic Intergenic -7956 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 235-14 chr19 53869426 53869842 + 0.833333 NA 5' UTR (NM_001020818, exon 1 of 2) 5' UTR (NM_001020818, exon 1 of 2) 243 NM_001020821 91663 Hs.380906 NM_138373 ENSG00000179820 MYADM SB135 myeloid associated differentiation marker protein-coding 272.167-19 chr4 157205236 157205613 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -15160 NM_001083619 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 242-33 chr8 81892098 81892628 + 0.833333 NA Intergenic L1MEc|LINE|L1 -50077 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 218.167-28 chr8 140824184 140824663 + 0.833333 NA intron (NR_148037, intron 9 of 34) intron (NR_148037, intron 9 of 34) -91770 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 185.333-6 chr11 31137115 31137349 + 0.833333 NA intron (NM_001367979, intron 10 of 38) intron (NM_001367979, intron 10 of 38) -144546 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 168.5-46 chr7 103366702 103366920 + 0.833333 NA intron (NM_002803, intron 9 of 11) AluSx1|SINE|Alu 19168 NM_002803 5701 Hs.437366 NM_002803 ENSG00000161057 PSMC2 MSS1|Nbla10058|S7 proteasome 26S subunit, ATPase 2 protein-coding 180.5-25 chr3 152288982 152289243 + 0.833333 NA intron (NM_001314057, intron 1 of 11) intron (NM_001314057, intron 1 of 11) -9902 NM_001363870 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 193.167-21 chr3 34626516 34626842 + 0.833333 NA Intergenic Intergenic 767344 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 178-43 chr8 87582593 87582836 + 0.833333 NA Intergenic Intergenic 291301 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 173-15 chr14 69383350 69383735 + 0.833333 NA intron (NM_004450, intron 3 of 3) intron (NM_004450, intron 3 of 3) 14757 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER ERH mRNA splicing and mitosis factor protein-coding 179.333-26 chr2 109607914 109608457 + 0.833333 NA intron (NM_001321509, intron 1 of 10) intron (NM_001321509, intron 1 of 10) 5482 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 226.167-11 chr15 63190350 63190948 + 0.833333 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) 1043 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 190.5-20 chr17 58594920 58595333 + 0.833333 NA intron (NM_031272, intron 14 of 31) Tigger15a|DNA|TcMar-Tigger -50798 NM_001038704 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 324.333-5 chr3 66192624 66193132 + 0.833333 NA intron (NM_173471, intron 1 of 10) intron (NM_173471, intron 1 of 10) -27864 NR_028475 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 175.5-37 chr4 150327049 150327368 + 0.833333 NA intron (NM_001367550, intron 48 of 56) AluJr|SINE|Alu 248763 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 213.667-43 chr8 38936840 38937256 + 0.833333 NA intron (NM_021623, intron 3 of 11) intron (NM_021623, intron 3 of 11) 35702 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing A2 protein-coding 454.5-2 chr10 21278636 21279483 + 0.833333 NA Intergenic MER58B|DNA|hAT-Charlie 93891 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 201.5-28 chr3 126680913 126681372 + 0.833333 NA Intergenic L1MC2|LINE|L1 19061 NR_034158 255330 Hs.145435 NM_174935 ENSG00000198284 NUP210P1 C3orf46 nucleoporin 210 pseudogene 1 pseudo 230.667-24 chr6 134907176 134907462 + 0.833333 NA Intergenic HAL1ME|LINE|L1 42782 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 216-43 chr6 132116696 132117049 + 0.833333 NA Intergenic Intergenic -1609 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 221.667-15 chr17 12421089 12421560 + 0.833333 NA Intergenic Intergenic -128644 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 171.333-19 chr16 13050328 13050647 + 0.833333 NA intron (NM_001145204, intron 2 of 4) AluJb|SINE|Alu 148889 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 174.833-18 chr5 5014978 5015214 + 0.833333 NA Intergenic Intergenic -19263 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 240-9 chr12 6069269 6069940 + 0.833333 NA intron (NM_000552, intron 10 of 51) intron (NM_000552, intron 10 of 51) -29421 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 205-15 chr2 155671196 155671506 + 0.833333 NA Intergenic (AAAG)n|Simple_repeat|Simple_repeat 583580 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 364.333-2 chr11 96305548 96305993 + 0.833333 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -35668 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 205.5-41 chr8 121780153 121780548 + 0.833333 NA Intergenic Intergenic -138910 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 172-4 chr10 83858938 83859259 + 0.833333 NA Intergenic L1ME1|LINE|L1 -182009 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 197.167-8 chr12 51828212 51828555 + 0.833333 NA intron (NM_001013690, intron 1 of 1) intron (NM_001013690, intron 1 of 1) 3534 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 219-23 chr3 65360450 65360855 + 0.833333 NA 3' UTR (NM_001365905, exon 23 of 23) 3' UTR (NM_001365905, exon 23 of 23) -533164 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 222.167-11 chr14 36802985 36803444 + 0.833333 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 145646 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 261-26 chr9 35535038 35535419 + 0.833333 NA intron (NM_001330740, intron 1 of 10) AluSq2|SINE|Alu -3404 NM_001135999 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 169.667-24 chr13 109515776 109516032 + 0.833333 NA Intergenic L1MEd|LINE|L1 115208 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 194.5-17 chr14 56310505 56310761 + 0.833333 NA Intergenic Intergenic 192222 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 217.333-44 chr8 124086637 124086925 + 0.833333 NA intron (NM_001039112, intron 33 of 40) L1MA3|LINE|L1 -45999 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 214.5-3 chr1 79069552 79069902 + 0.833333 NA Intergenic L1MDa|LINE|L1 -62997 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 254.333 chr1 91277994 91278550 + 0.833333 NA intron (NM_001017975, intron 30 of 38) intron (NM_001017975, intron 30 of 38) 126565 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 383.833-6 chr2 57189094 57189753 + 0.833333 NA Intergenic Intergenic -718228 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 197.667-46 chr7 78397687 78398270 + 0.833333 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 50736 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 199.333-35 chr4 89586433 89586822 + 0.833333 NA Intergenic Intergenic -249774 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 340.333-16 chr8 144101607 144102124 + 0.833333 NA intron (NR_038270, intron 2 of 7) L2a|LINE|L2 1908 NM_030974 81858 Hs.529755 NM_030974 ENSG00000179526 SHARPIN SIPL1 SHANK associated RH domain interactor protein-coding 204.5-21 chr20 8387546 8387912 + 0.833333 NA intron (NM_182734, intron 3 of 32) Tigger1|DNA|TcMar-Tigger 139025 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 223.833-9 chr16 77019554 77019929 + 0.833333 NA Intergenic Intergenic 150805 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 234-26 chr20 49548864 49549343 + 0.833333 NA intron (NM_000961, intron 2 of 9) intron (NM_000961, intron 2 of 9) 19034 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 267.667-15 chr5 36806588 36806981 + 0.833333 NA Intergenic L1M5|LINE|L1 69910 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 186.833-12 chr2 55476812 55477140 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -42619 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 262.667-28 chr6 24855564 24856231 + 0.833333 NA intron (NM_001286445, intron 8 of 21) AluJo|SINE|Alu 21373 NM_015864 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 228.167-10 chr13 75869295 75869847 + 0.833333 NA Intergenic Intergenic -1467 NM_001257995 729420 Hs.586820 NM_001257995 LMO7DN C13orf45 LMO7 downstream neighbor protein-coding 228.833-15 chr4 141481134 141481438 + 0.833333 NA Intergenic L1MA4|LINE|L1 -148669 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 217.167-10 chr14 73935308 73935911 + 0.833333 NA intron (NM_152445, intron 8 of 8) intron (NM_152445, intron 8 of 8) -14325 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 214.667-47 chrX 39149879 39150201 + 0.833333 NA Intergenic Intergenic 177322 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 264.333-11 chr17 28727184 28727932 + 0.833333 NA promoter-TSS (NM_001160407) promoter-TSS (NM_001160407) -627 NM_001160407 116238 Hs.499952 NM_138463 ENSG00000160606 TLCD1 - TLC domain containing 1 protein-coding 198.167-17 chr2 217165458 217165851 + 0.833333 NA Intergenic Intergenic -117079 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 224.167-7 chr12 29428967 29429484 + 0.833333 NA intron (NR_073172, intron 1 of 1) intron (NR_073172, intron 1 of 1) 39931 NR_073171 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 222.167-36 chr7 110023578 110023953 + 0.833333 NA Intergenic Intergenic -63552 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 226.333-6 chr14 70072074 70072460 + 0.833333 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) 7950 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 177.667-23 chr2 184617210 184617759 + 0.833333 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 18955 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 187-5 chr1 199827975 199828343 + 0.833333 NA Intergenic Intergenic -199551 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 174.833-12 chr2 63043435 63043778 + 0.833333 NA TTS (NR_027069) TTS (NR_027069) 4105 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 234.167-13 chr18 76304969 76305331 + 0.833333 NA Intergenic L1MD3|LINE|L1 95640 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 175.5-49 chr6 86203879 86204108 + 0.833333 NA Intergenic L1MC5|LINE|L1 -525260 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 187.333-11 chr11 12753437 12753953 + 0.833333 NA intron (NM_021961, intron 2 of 12) L1ME3A|LINE|L1 79274 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 168.667-9 chr12 16236914 16237223 + 0.833333 NA intron (NM_001170798, intron 5 of 8) intron (NM_001170798, intron 5 of 8) 40617 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 193-20 chr2 30074381 30074813 + 0.833333 NA Intergenic Intergenic -72410 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 209.333-16 chr12 127230673 127230940 + 0.833333 NA Intergenic LTR8|LTR|ERV1 53477 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 169.833-25 chr21 31855160 31855388 + 0.833333 NA Intergenic AluJr|SINE|Alu -17746 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 257-16 chr18 32714288 32714688 + 0.833333 NA intron (NM_020805, intron 3 of 8) intron (NM_020805, intron 3 of 8) 58535 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 299-2 chr1 110692672 110693237 + 0.833333 NA Intergenic Intergenic -18014 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 271.667-16 chr20 17419185 17419840 + 0.833333 NA intron (NM_002594, intron 6 of 11) intron (NM_002594, intron 6 of 11) 111867 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 195.833-10 chr12 113867468 113867934 + 0.833333 NA intron (NM_001146698, intron 21 of 24) AluSz|SINE|Alu -94018 NR_110025 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 248.167-11 chr2 43608416 43608823 + 0.833333 NA Intergenic MARNA|DNA|TcMar-Mariner -12573 NM_022065 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 222.833-20 chr8 125664343 125664665 + 0.833333 NA Intergenic Intergenic 232295 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 196.167-25 chr3 59161358 59161643 + 0.833333 NA Intergenic AluSx1|SINE|Alu -111468 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 180.833-11 chr19 2061309 2061706 + 0.833333 NA Intergenic CpG -10263 NM_199054 2872 Hs.515032 NM_017572 ENSG00000099875 MKNK2 GPRK7|MNK2 MAPK interacting serine/threonine kinase 2 protein-coding 186-23 chr2 40446626 40447121 + 0.833333 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 4811 NM_001351489 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 220.5-28 chr20 6032194 6032519 + 0.833333 NA intron (NR_136617, intron 4 of 5) intron (NR_136617, intron 4 of 5) 21704 NM_152611 164312 Hs.149133 NM_152611 ENSG00000125872 LRRN4 C20orf75|NLRR-4|NLRR4|dJ1056H1.1 leucine rich repeat neuronal 4 protein-coding 193-22 chr2 60910902 60911462 + 0.833333 NA intron (NM_002908, intron 4 of 10) L1M5|LINE|L1 29608 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 174.333-29 chr4 79930579 79930915 + 0.833333 NA intron (NM_001286781, intron 16 of 16) Tigger15a|DNA|TcMar-Tigger 103276 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 251-22 chr3 77227219 77227752 + 0.833333 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 129473 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 184.167-35 chr9 127586642 127586891 + 0.833333 NA Intergenic Intergenic -7735 NM_001035534 64855 Hs.522401 NM_022833 ENSG00000136830 NIBAN2 C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6 niban apoptosis regulator 2 protein-coding 173.833-38 chr9 108738347 108738669 + 0.833333 NA Intergenic L1ME2|LINE|L1 117478 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 186.833 chr1 38685265 38685591 + 0.833333 NA Intergenic L2b|LINE|L2 174344 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 191.833-24 chr7 45000604 45000870 + 0.833333 NA intron (NM_001363459, intron 1 of 9) intron (NM_001363459, intron 1 of 9) 536 NM_001363459 83605 Hs.148272 NM_031443 ENSG00000136280 CCM2 C7orf22|OSM|PP10187 CCM2 scaffold protein protein-coding 170.167-38 chr7 8598432 8598744 + 0.833333 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 164979 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 216-38 chr4 146397903 146398298 + 0.833333 NA intron (NM_001317816, intron 4 of 10) intron (NM_001317816, intron 4 of 10) -10483 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 276.833-6 chr14 71704599 71705087 + 0.833333 NA intron (NM_015556, intron 18 of 26) intron (NM_015556, intron 18 of 26) 118545 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 296.333-5 chr2 47280468 47280896 + 0.833333 NA intron (NR_110207, intron 1 of 2) L1MB4|LINE|L1 -54633 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 171.333-42 chr5 41140045 41140307 + 0.833333 NA Intergenic LTR8A|LTR|ERV1 -68834 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 244-15 chr2 126484626 126485027 + 0.833333 NA Intergenic Intergenic -171109 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 187.167-6 chr1 184552696 184553097 + 0.833333 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 165867 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 185.167-23 chr6 28267113 28267359 + 0.833333 NA promoter-TSS (NM_001287421) promoter-TSS (NM_001287421) -123 NM_001287421 7741 Hs.157883 NM_007151 ENSG00000197062 ZSCAN26 SRE-ZBP|SREZBP|ZNF187 zinc finger and SCAN domain containing 26 protein-coding 239.833-12 chr5 14601011 14601363 + 0.833333 NA intron (NM_019018, intron 2 of 7) intron (NM_019018, intron 2 of 7) 19395 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 178.167-2 chr1 119564915 119565387 + 0.833333 NA non-coding (NR_033781, exon 1 of 1) non-coding (NR_033781, exon 1 of 1) 1271 NR_033781 128102 Hs.681806 NR_033781 HSD3BP4 - hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4 pseudo 166-20 chr12 102764176 102764591 + 0.833333 NA Intergenic L2b|LINE|L2 60016 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 299.834-4 chr14 70785459 70786125 + 0.833333 NA intron (NM_033141, intron 2 of 12) MER44D|DNA|TcMar-Tigger -2340 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 194.834-10 chr21 35259981 35260537 + 0.833333 NA Intergenic L1MEf|LINE|L1 -210961 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 174.167-4 chr11 33043652 33043953 + 0.833333 NA exon (NM_018393, exon 2 of 10) exon (NM_018393, exon 2 of 10) 3787 NM_001145541 55346 Hs.655341 NM_018393 ENSG00000176148 TCP11L1 dJ85M6.3 t-complex 11 like 1 protein-coding 211.167-29 chr8 123780251 123780616 + 0.833333 NA intron (NM_001317917, intron 7 of 23) intron (NM_001317917, intron 7 of 23) 11994 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 175-55 chr8 86726476 86726710 + 0.833333 NA exon (NM_019098, exon 3 of 18) exon (NM_019098, exon 3 of 18) 17082 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 215.5-26 chr7 100894938 100895231 + 0.833333 NA promoter-TSS (NM_001367917) promoter-TSS (NM_001367917) -478 NM_001367917 43 Hs.154495 NM_000665 ENSG00000087085 ACHE ACEE|ARACHE|N-ACHE|YT acetylcholinesterase (Cartwright blood group) protein-coding 196.167-23 chr20 48240018 48240338 + 0.833333 NA Intergenic AluY|SINE|Alu -119733 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 184-11 chr10 110851536 110851953 + 0.833333 NA Intergenic Cheshire|DNA|hAT-Charlie 19160 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 175.667-33 chr21 28361748 28361973 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR -133193 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 164.667-38 chr4 56668243 56668472 + 0.833333 NA intron (NM_032495, intron 1 of 3) Tigger16a|DNA|TcMar-Tigger -11835 NM_139211 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 175.167-13 chr14 63226113 63226461 + 0.833333 NA intron (NM_020663, intron 1 of 4) L1M7|LINE|L1 21844 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 179-40 chr7 28076986 28077681 + 0.833333 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -103124 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 248.667-8 chr11 104167962 104168538 + 0.833333 NA Intergenic Intergenic -4103 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 241-3 chr11 85856031 85856414 + 0.833333 NA intron (NM_001286159, intron 1 of 10) intron (NM_001286159, intron 1 of 10) 1121 NM_001286159 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 273.5-3 chr10 48751354 48752175 + 0.833333 NA intron (NM_020945, intron 12 of 61) intron (NM_020945, intron 12 of 61) 66301 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 165.667-12 chr11 94171848 94172072 + 0.833333 NA intron (NM_015368, intron 2 of 4) intron (NM_015368, intron 2 of 4) 43119 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 176.167-46 chr8 93565387 93565598 + 0.833333 NA intron (NR_033858, intron 5 of 10) LTR50|LTR|ERVL 134941 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 177.167-24 chr7 49390052 49390398 + 0.833333 NA Intergenic Intergenic -383413 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 188.5-6 chr10 37494987 37495352 + 0.833333 NA Intergenic AluSg|SINE|Alu 107762 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 206.5-37 chr2 218568128 218568658 + 0.833333 NA promoter-TSS (NM_005444) promoter-TSS (NM_005444) -42 NM_020935 57695 Hs.166068 NM_020935 ENSG00000135913 USP37 - ubiquitin specific peptidase 37 protein-coding 262.5-10 chr14 21421749 21422381 + 0.833333 NA intron (NM_001170629, intron 5 of 37) AluSx|SINE|Alu 15210 NM_020920 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 174-33 chr21 30788726 30788959 + 0.833333 NA Intergenic Charlie2b|DNA|hAT-Charlie 24432 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 320.5-17 chr8 78262466 78263001 + 0.833333 NA Intergenic Intergenic -253607 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 266-25 chr8 52161430 52161883 + 0.833333 NA intron (NM_014682, intron 13 of 25) intron (NM_014682, intron 13 of 25) -32706 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 201.5-12 chr15 43871902 43872225 + 0.833333 NA non-coding (NR_104455, exon 15 of 15) non-coding (NR_104455, exon 15 of 15) 6108 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 194.333-20 chr16 3226898 3227218 + 0.833333 NA intron (NM_198088, intron 4 of 4) AluSx|SINE|Alu 8100 NM_001145448 7752 Hs.632222 NM_003454 ENSG00000010539 ZNF200 - zinc finger protein 200 protein-coding 221.333 chr10 10132146 10132638 + 0.833333 NA Intergenic Intergenic 73670 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 183-21 chr16 56403519 56403738 + 0.833333 NA intron (NM_001144, intron 6 of 13) L1ME4c|LINE|L1 21361 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 269.333-12 chr2 230892291 230892780 + 0.833333 NA intron (NR_038238, intron 1 of 3) MLT1G1|LTR|ERVL-MaLR 5989 NR_038238 151484 Hs.559309 NR_038238 ENSG00000232520 LOC151484 - uncharacterized LOC151484 ncRNA 208.667-18 chr15 71098958 71099457 + 0.833333 NA Intergenic Intergenic -42242 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 248.833-25 chr6 159032793 159033141 + 0.833333 NA Intergenic Intergenic 9386 NM_001278733 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 210.667-35 chr4 128179213 128179507 + 0.833333 NA intron (NR_146772, intron 13 of 19) intron (NR_146772, intron 13 of 19) 108453 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 174.333-32 chr5 40222758 40223202 + 0.833333 NA Intergenic Intergenic 170689 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 231.167-26 chr4 181026567 181026992 + 0.833333 NA Intergenic Intergenic 132370 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 308.334-2 chr2 39716448 39717116 + 0.833333 NA intron (NM_152390, intron 3 of 3) L2b|LINE|L2 50865 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 253.5-2 chr1 105868847 105869278 + 0.833333 NA Intergenic AluSz|SINE|Alu 159191 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 208-14 chr14 35753567 35753954 + 0.833333 NA intron (NM_014990, intron 7 of 40) L1MB8|LINE|L1 9171 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 192.5-20 chr2 193353721 193354124 + 0.833333 NA Intergenic Intergenic 604077 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 179.167-27 chr8 100544045 100544278 + 0.833333 NA intron (NM_001270377, intron 1 of 4) intron (NM_001270377, intron 1 of 4) 15598 NM_001270377 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 256.667-29 chr8 140919180 140919567 + 0.833333 NA intron (NM_001352700, intron 1 of 34) intron (NM_001352700, intron 1 of 34) 81631 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 255.333-2 chr1 100429787 100430128 + 0.833333 NA intron (NM_001319212, intron 5 of 13) FLAM_A|SINE|Alu 77451 NM_001319210 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 209.5-17 chr15 67112493 67112867 + 0.833333 NA intron (NM_005902, intron 1 of 8) L1MB7|LINE|L1 -13036 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 239.5-36 chr7 48826188 48826636 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -98135 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 202.5-42 chr4 68170921 68171202 + 0.833333 NA Intergenic Intergenic -11231 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 200.167-29 chr8 124564811 124565194 + 0.833333 NA intron (NM_001282971, intron 10 of 14) intron (NM_001282971, intron 10 of 14) 25879 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 164.333-18 chr14 72665601 72665885 + 0.833333 NA intron (NM_001280544, intron 9 of 9) L1MC4a|LINE|L1 148923 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 276.5-18 chr8 53919758 53920403 + 0.833333 NA intron (NR_104579, intron 1 of 3) AluJb|SINE|Alu 39208 NR_104579 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 238.333-42 chr8 141146405 141146991 + 0.833333 NA intron (NM_001362798, intron 5 of 21) intron (NM_001362798, intron 5 of 21) 18109 NM_001352891 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 252.167-11 chr2 158395053 158395387 + 0.833333 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 61533 NM_001301684 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 211.667-43 chr7 89985324 89985739 + 0.833333 NA intron (NR_110029, intron 2 of 2) L1PA4|LINE|L1 -133869 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 287.5-13 chr22 32396510 32397058 + 0.833333 NA intron (NM_014306, intron 7 of 11) intron (NM_014306, intron 7 of 11) 15463 NM_014306 51493 Hs.474643 NM_014306 ENSG00000100220 RTCB C22orf28|DJ149A16.6|FAAP|HSPC117 RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding 232.833-18 chr2 67919393 67919873 + 0.833333 NA Intergenic MER31A|LTR|ERV1 -94071 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 186-17 chr18 5973515 5973926 + 0.833333 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -77766 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 248.833-23 chr6 57332001 57332546 + 0.833333 NA intron (NM_000947, intron 5 of 13) L1MB5|LINE|L1 14643 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 260.667-33 chr22 40951252 40951712 + 0.833333 NA intron (NM_014248, intron 1 of 4) CpG 104 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 240.167-7 chr14 52496987 52497312 + 0.833333 NA intron (NM_001160047, intron 9 of 20) intron (NM_001160047, intron 9 of 20) 55356 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 304-17 chr2 204025571 204025967 + 0.833333 NA Intergenic (CTTTCT)n|Simple_repeat|Simple_repeat 89021 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 251.5-2 chr1 93320523 93320955 + 0.833333 NA intron (NR_034089, intron 8 of 8) MER1A|DNA|hAT-Charlie 25072 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 188.333-39 chr8 5042061 5042426 + 0.833333 NA Intergenic Intergenic -47329 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 235.333-16 chr3 79903589 79904021 + 0.833333 NA Intergenic Intergenic -135807 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 211.167-16 chr4 15232800 15233099 + 0.833333 NA intron (NR_125911, intron 2 of 5) MIR|SINE|MIR -107039 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 219-25 chr4 58610277 58610761 + 0.833333 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -74191 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 434-12 chr7 25864226 25864960 + 0.833333 NA Intergenic Intergenic -74474 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 170.167-4 chr1 236103305 236103560 + 0.833333 NA Intergenic Intergenic -38342 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 395.166-3 chr7 37489748 37490620 + 0.833333 NA Intergenic Intergenic -40858 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 232.333-13 chr19 46840753 46841114 + 0.833333 NA intron (NM_001301078, intron 2 of 4) intron (NM_001301078, intron 2 of 4) 9381 NM_001301076 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 subunit sigma 1 protein-coding 196.333-35 chr4 92280377 92280829 + 0.833333 NA Intergenic Intergenic -3301 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 239.833-7 chr2 33514326 33514673 + 0.833333 NA intron (NM_015376, intron 1 of 16) AluJb|SINE|Alu 624 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 190-40 chr4 153143094 153143361 + 0.833333 NA Intergenic Intergenic -9107 NM_001351056 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 252.167-8 chr17 35237083 35237491 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -5785 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 173.833-6 chr10 19354097 19354326 + 0.833333 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 305410 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 459.167-5 chr16 5502106 5502944 + 0.833333 NA Intergenic Intergenic 113725 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 184.833-28 chr6 149012275 149012671 + 0.833333 NA intron (NM_005715, intron 5 of 7) intron (NM_005715, intron 5 of 7) 20188 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 163.5-6 chr11 15327287 15327499 + 0.833333 NA Intergenic (GAAT)n|Simple_repeat|Simple_repeat 178291 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 208.5-8 chr12 114405833 114406083 + 0.833333 NA 5' UTR (NM_181486, exon 1 of 9) 5' UTR (NM_181486, exon 1 of 9) 186 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 257-5 chr10 51788517 51788918 + 0.833333 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -89122 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 185.167-14 chr2 41115441 41115819 + 0.833333 NA Intergenic Intergenic -603195 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 194.333-36 chr8 82542569 82542916 + 0.833333 NA Intergenic Intergenic -369362 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 340.833-7 chr3 39971729 39972238 + 0.833333 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -128028 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 180.667-7 chr10 59754686 59755137 + 0.833333 NA Intergenic AluJr|SINE|Alu -1456 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 168.667-49 chr8 109735876 109736318 + 0.833333 NA Intergenic Intergenic -44306 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 209.333-30 chr5 33188207 33188680 + 0.833333 NA Intergenic L1M4b|LINE|L1 -41292 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 408.167-2 chr10 133307211 133308302 + 0.833333 NA intron (NR_046330, intron 1 of 17) AluSz6|SINE|Alu -1158 NR_130127 118472 Hs.422113 NM_145806 ENSG00000198546 ZNF511 - zinc finger protein 511 protein-coding 178-33 chr4 65669856 65670103 + 0.833333 NA promoter-TSS (NM_001318761) promoter-TSS (NM_001318761) 18 NR_034138 100144602 Hs.201854 NR_034138 ENSG00000250846 EPHA5-AS1 - EPHA5 antisense RNA 1 ncRNA 209.833-7 chr11 79760318 79760662 + 0.833333 NA Intergenic L2c|LINE|L2 -319460 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 251.5-19 chr4 19894755 19895169 + 0.833333 NA Intergenic Intergenic -356943 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 167.667-31 chr3 27521361 27521614 + 0.833333 NA Intergenic L2a|LINE|L2 -37103 NR_135541 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 345.5 chr1 182395654 182396486 + 0.833333 NA Intergenic MIRb|SINE|MIR -3864 NM_002065 2752 Hs.132016 NM_002065 ENSG00000135821 GLUL GLNS|GS|PIG43|PIG59 glutamate-ammonia ligase protein-coding 187.5-45 chr9 24833904 24834298 + 0.833333 NA Intergenic Intergenic -288204 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 165-8 chr11 11577105 11577586 + 0.833333 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) 44660 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 207-19 chr22 29861876 29862240 + 0.833333 NA Intergenic Intergenic -21111 NM_153050 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 208.5-6 chr11 98697589 98698055 + 0.833333 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -323127 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 222.667-38 chr7 11499856 11500388 + 0.833333 NA intron (NM_015204, intron 6 of 26) L1PA14|LINE|L1 332076 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 177.833-13 chr15 79991761 79992298 + 0.833333 NA Intergenic Intergenic -20833 NM_001114735 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 225.167-33 chrX 130917002 130917578 + 0.833333 NA Intergenic MIRb|SINE|MIR -13973 NM_001281736 10495 Hs.171458 NM_006375 ENSG00000165675 ENOX2 APK1|COVA1|tNOX ecto-NOX disulfide-thiol exchanger 2 protein-coding 178.667-28 chr3 47237724 47237975 + 0.833333 NA intron (NM_001134878, intron 18 of 21) intron (NM_001134878, intron 18 of 21) 12760 NR_145712 109617025 NR_145712 SNORD13J - small nucleolar RNA, C/D box 13J snoRNA 183.333-68 chr9 129334337 129334882 + 0.833333 NA Intergenic Intergenic -2314 NR_120686 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 389.666-3 chr6 62583233 62583801 + 0.833333 NA Intergenic Intergenic -297290 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 283.667-3 chr13 94549015 94549406 + 0.833333 NA 5' UTR (NM_001322183, exon 1 of 8) 5' UTR (NM_001322183, exon 1 of 8) 196 NM_001322184 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 336.167-7 chr7 132049656 132050331 + 0.833333 NA Intergenic L1MEa|LINE|L1 139773 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 257.667-25 chr9 74217659 74218261 + 0.833333 NA Intergenic LTR1A2|LTR|ERV1 -153571 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 171.667-48 chr5 24772382 24772847 + 0.833333 NA Intergenic MER92B|LTR|ERV1 67969 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 209.333-46 chrX 68807553 68808108 + 0.833333 NA Intergenic L2a|LINE|L2 -21167 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 219.667-29 chr6 52058342 52058803 + 0.833333 NA exon (NM_170724, exon 16 of 61) exon (NM_170724, exon 16 of 61) 29041 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 189.833-20 chr8 15098372 15098674 + 0.833333 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 139908 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 243.833-12 chr14 85856609 85857045 + 0.833333 NA Intergenic Intergenic -77851 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 174.833-10 chr14 74119835 74120136 + 0.833333 NA intron (NM_001024674, intron 5 of 5) AluSq2|SINE|Alu 35032 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 269.333-26 chr9 31075643 31076287 + 0.833333 NA Intergenic Intergenic 305525 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 215.667-23 chr2 126953643 126954123 + 0.833333 NA Intergenic LTR40a|LTR|ERVL 54993 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 165.667-44 chr5 147051363 147051716 + 0.833333 NA intron (NM_181677, intron 2 of 10) L2c|LINE|L2 4598 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 208.167-20 chr5 75324230 75324498 + 0.833333 NA Intergenic Intergenic -12804 NM_001364187 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 193.167-37 chrX 136268600 136268929 + 0.833333 NA Intergenic Intergenic -12282 NM_001173516 79649 Hs.446275 NM_024597 ENSG00000129680 MAP7D3 MDP3 MAP7 domain containing 3 protein-coding 222.667-42 chr9 79256970 79257480 + 0.833333 NA Intergenic Intergenic -111559 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 267.833-2 chr10 590271 590741 + 0.833333 NA intron (NM_014974, intron 1 of 36) intron (NM_014974, intron 1 of 36) -38058 NR_147612 101930421 Hs.654707 NR_147612 ENSG00000225140 LOC101930421 - uncharacterized LOC101930421 ncRNA 213.667-4 chr12 7357843 7358300 + 0.833333 NA intron (NM_001297650, intron 18 of 19) L1MCa|LINE|L1 53739 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 228.667 chr1 99739566 99739966 + 0.833333 NA intron (NM_001013660, intron 6 of 16) MIRb|SINE|MIR 26027 NM_001013660 391059 Hs.454779 NM_001013660 ENSG00000156869 FRRS1 SDFR2|SDR2 ferric chelate reductase 1 protein-coding 211.167-27 chr8 109883137 109883435 + 0.833333 NA Intergenic Intergenic 92485 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 235.833 chr1 27002074 27002685 + 0.833333 NA Intergenic Intergenic 8687 NM_001013642 388610 Hs.355747 NM_001013642 ENSG00000253368 TRNP1 C1orf225|TNRP|TRNP TMF1 regulated nuclear protein 1 protein-coding 181-33 chr5 29905068 29905361 + 0.833333 NA Intergenic Intergenic 24654 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 173.167-38 chr6 124453567 124454015 + 0.833333 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 170786 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 202.333-20 chr2 172813255 172813531 + 0.833333 NA intron (NM_007023, intron 3 of 30) intron (NM_007023, intron 3 of 30) -8194 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 164.333-56 chr9 126567379 126567578 + 0.833333 NA Intergenic L1MD2|LINE|L1 -46965 NM_001174146 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 207-28 chr6 152979164 152979654 + 0.833333 NA intron (NM_001142522, intron 1 of 4) L1MC3|LINE|L1 3632 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 231.167-15 chr19 27966577 27967080 + 0.833333 NA intron (NR_146734, intron 5 of 7) Charlie1a|DNA|hAT-Charlie -172888 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 247.5-15 chr15 65873697 65874357 + 0.833333 NA intron (NM_004663, intron 1 of 4) intron (NM_004663, intron 1 of 4) 4536 NM_001206836 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 174.833-8 chr12 48633423 48633851 + 0.833333 NA Intergenic (TGC)n|Simple_repeat|Simple_repeat 20881 NR_002968 677815 Hs.689717 NR_002968 ENSG00000221491 SNORA2C ACA34|MIR1291|SNORA34 small nucleolar RNA, H/ACA box 2C snoRNA 203.333-62 chr8 114309353 114309764 + 0.833333 NA Intergenic Intergenic -872619 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 183.333-24 chr14 74128432 74128706 + 0.833333 NA intron (NM_001024674, intron 5 of 5) L1ME1|LINE|L1 43616 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 218.167-16 chr21 22301944 22302344 + 0.833333 NA Intergenic L1ME1|LINE|L1 203527 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 203.333-53 chr6 138157893 138158244 + 0.833333 NA Intergenic Charlie9|DNA|hAT-Charlie -3871 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 166.5-17 chr14 65605588 65605794 + 0.833333 NA intron (NM_178156, intron 2 of 9) MLT1B|LTR|ERVL-MaLR 134589 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 212.833-22 chr6 104776845 104777319 + 0.833333 NA exon (NM_001350559, exon 14 of 22) exon (NM_001350559, exon 14 of 22) 82464 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 230.167-9 chr17 29945667 29946253 + 0.833333 NA intron (NR_026738, intron 3 of 15) L1PB3|LINE|L1 4326 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 241.667-17 chr20 49799472 49799833 + 0.833333 NA Intergenic Intergenic -13061 NM_001260491 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 282.833-3 chr11 27830382 27830986 + 0.833333 NA Intergenic Intergenic -108654 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 195.333-16 chr2 31483428 31483733 + 0.833333 NA Intergenic L1PA14|LINE|L1 -68838 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 208.667-14 chr12 85775616 85776231 + 0.833333 NA Intergenic Intergenic 60486 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 234.667-32 chr8 80690646 80690989 + 0.833333 NA intron (NM_001033723, intron 3 of 8) AluSx|SINE|Alu 183651 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 242.5-39 chr5 144170115 144170619 + 0.833333 NA promoter-TSS (NM_020768) promoter-TSS (NM_020768) 292 NM_001024947 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 210.667-19 chr16 64099403 64099727 + 0.833333 NA Intergenic Intergenic 1022498 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 327.167-2 chr10 86384792 86385302 + 0.833333 NA Intergenic L1MEg|LINE|L1 -18252 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 206.833-19 chr5 62702262 62702733 + 0.833333 NA Intergenic Intergenic 123678 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 249.333-2 chr1 176848039 176848488 + 0.833333 NA Intergenic Intergenic 181182 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 163.667-34 chr21 42916205 42916516 + 0.833333 NA TTS (NM_001308491) TTS (NM_001308491) 9238 NM_001308491 90625 NM_001308491 ERVH48-1 C21orf105|NDUFV3-AS1 endogenous retrovirus group 48 member 1 protein-coding 183.667-37 chr3 59190533 59190787 + 0.833333 NA Intergenic L2a|LINE|L2 -140628 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 182.333-19 chr3 123736291 123736586 + 0.833333 NA intron (NM_001321309, intron 7 of 32) intron (NM_001321309, intron 7 of 32) 46794 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 217.333-28 chr4 87422597 87422974 + 0.833333 NA 5' UTR (NM_001248011, exon 1 of 7) 5' UTR (NM_001248011, exon 1 of 7) 188 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 173.167-6 chr10 62048868 62049277 + 0.833333 NA promoter-TSS (NM_001244638) promoter-TSS (NM_001244638) -285 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 342.167-9 chr8 108695907 108696578 + 0.833333 NA intron (NR_136411, intron 1 of 3) MIRb|SINE|MIR 91352 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 254.333-25 chr2 210697081 210697627 + 0.833333 NA Intergenic Intergenic 79783 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 197.5-7 chr11 124742347 124742773 + 0.833333 NA intron (NM_001126181, intron 1 of 3) intron (NM_001126181, intron 1 of 3) 2618 NM_001126181 4900 Hs.524116 NM_006176 ENSG00000154146 NRGN RC3|hng neurogranin protein-coding 182-52 chrX 94524785 94525022 + 0.833333 NA Intergenic L1M2|LINE|L1 538323 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 175.5-39 chr5 20263831 20264176 + 0.833333 NA intron (NM_001349556, intron 1 of 13) intron (NM_001349556, intron 1 of 13) -41548 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 248.834-5 chr14 73769184 73769784 + 0.833333 NA intron (NM_001043318, intron 1 of 11) L1ME4c|LINE|L1 -9181 NM_001367710 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 230-21 chr17 54771820 54772153 + 0.833333 NA Intergenic Intergenic -128705 NM_001321175 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 273.833-7 chr4 179814697 179815123 + 0.833333 NA Intergenic Intergenic 1344239 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 246-31 chr6 105423345 105423743 + 0.833333 NA Intergenic Intergenic -20462 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 174.167-8 chr14 69272473 69272745 + 0.833333 NA intron (NM_020692, intron 1 of 15) Tigger3c|DNA|TcMar-Tigger 12451 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 169-44 chr6 47157137 47157484 + 0.833333 NA Intergenic MIR3|SINE|MIR -114978 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 191.333-37 chr6 11918574 11919123 + 0.833333 NA Intergenic Intergenic 82396 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 192.833-3 chr1 173771110 173771426 + 0.833333 NA intron (NM_014458, intron 8 of 11) AluJr|SINE|Alu 52864 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 191.167-4 chr10 44520217 44520642 + 0.833333 NA Intergenic MIRb|SINE|MIR -135332 NM_199168 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 213.667-42 chr7 127486431 127486894 + 0.833333 NA TTS (NR_110024) TTS (NR_110024) 9779 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 259-31 chr4 145081851 145082314 + 0.833333 NA intron (NR_046345, intron 1 of 2) intron (NR_046345, intron 1 of 2) 15300 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 269-4 chr10 78801832 78802154 + 0.833333 NA Intergenic Intergenic 265455 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 165.667-13 chr11 107545450 107545725 + 0.833333 NA intron (NM_138775, intron 7 of 11) Tigger18a|DNA|TcMar-Tigger 20148 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 189-19 chr15 25754709 25755121 + 0.833333 NA intron (NM_024490, intron 2 of 20) MER57A-int|LTR|ERV1 93910 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 237.167-2 chr10 54005671 54005967 + 0.833333 NA intron (NM_001354411, intron 21 of 34) L1MA3|LINE|L1 -480411 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 167.333-19 chr12 25070325 25070604 + 0.833333 NA intron (NR_159367, intron 5 of 19) L1MB7|LINE|L1 17758 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 198-2 chr1 66726730 66727377 + 0.833333 NA intron (NM_001350218, intron 17 of 22) L1ME1|LINE|L1 -25406 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 198.167 chr1 35031628 35031996 + 0.833333 NA intron (NM_007167, intron 1 of 15) CpG 133 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 321.167-4 chr11 107683488 107683993 + 0.833333 NA Intergenic Intergenic 28316 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 176.833-31 chr5 43626349 43626604 + 0.833333 NA intron (NM_012343, intron 6 of 21) L1ME4a|LINE|L1 -23246 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 164.5-58 chr8 139215840 139216151 + 0.833333 NA Intergenic MamRep605|LTR?|LTR? -301954 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 170-47 chr5 132758394 132758669 + 0.833333 NA exon (NM_001098812, exon 10 of 10) exon (NM_001098812, exon 10 of 10) 11086 NM_001287252 645121 Hs.522057 NM_001039780 ENSG00000205089 CCNI2 - cyclin I family member 2 protein-coding 236.333-20 chr3 123556413 123556837 + 0.833333 NA intron (NM_001329784, intron 3 of 8) L1MC4|LINE|L1 27992 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 165.167-41 chr6 53916908 53917153 + 0.833333 NA intron (NM_018214, intron 11 of 13) intron (NM_018214, intron 11 of 13) -12952 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 183-7 chr10 93864914 93865201 + 0.833333 NA Intergenic L1MB3|LINE|L1 -28921 NR_144335 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 170.167-3 chr1 179389051 179389372 + 0.833333 NA intron (NR_073544, intron 9 of 25) AluSx|SINE|Alu 23167 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 169.833-40 chr7 74355006 74355587 + 0.833333 NA intron (NM_032421, intron 4 of 15) intron (NM_032421, intron 4 of 15) 65821 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 252.167-23 chr9 11851466 11851797 + 0.833333 NA Intergenic Intergenic -841754 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 348.333-3 chr20 43691570 43692182 + 0.833333 NA intron (NM_001278610, intron 4 of 12) intron (NM_001278610, intron 4 of 12) 24762 NM_002466 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 163.833-46 chrX 114626268 114626510 + 0.833333 NA intron (NM_001256761, intron 2 of 5) AluJb|SINE|Alu -4408 NR_002993 677816 Hs.693123 NR_002993 ENSG00000208839 SNORA35 HBI-36|SNORA35A small nucleolar RNA, H/ACA box 35 snoRNA 184.333-42 chr8 58801624 58802011 + 0.833333 NA Intergenic Intergenic -141964 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 168.167-36 chr8 141651655 141652085 + 0.833333 NA Intergenic MER45A|DNA|hAT-Tip100 134443 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 254.167-5 chr11 31341174 31341839 + 0.833333 NA intron (NM_181807, intron 1 of 8) Tigger3a|DNA|TcMar-Tigger 28233 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 177.167-2 chr10 7938524 7938959 + 0.833333 NA intron (NM_031923, intron 2 of 6) L2|LINE|L2 113750 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 163.667-44 chr4 104316603 104317018 + 0.833333 NA Intergenic L1PB1|LINE|L1 -174155 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 217.333-38 chr6 44867534 44867992 + 0.833333 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -315882 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 354.333-9 chr4 128863386 128863986 + 0.833333 NA 3' UTR (NM_024900, exon 9 of 9) 3' UTR (NM_024900, exon 9 of 9) 51842 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 185.833-22 chr5 16457748 16458139 + 0.833333 NA intron (NM_033414, intron 4 of 5) intron (NM_033414, intron 4 of 5) 7857 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 216.667-16 chr14 55471174 55471619 + 0.833333 NA Intergenic L1M5|LINE|L1 -30851 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 234-7 chr10 76103457 76103754 + 0.833333 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 320844 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 190-55 chr8 139351277 139351780 + 0.833333 NA Intergenic Intergenic 351595 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 189.833-3 chr10 10907291 10907748 + 0.833333 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 44644 NR_024411 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 205-27 chr8 99534370 99534659 + 0.833333 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) 2216 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 176.167-5 chr11 24109781 24110225 + 0.833333 NA Intergenic Intergenic -387050 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 295.167-6 chr12 85632407 85632858 + 0.833333 NA Intergenic L3|LINE|CR1 203777 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 187.5-13 chr11 131743279 131743641 + 0.833333 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -79904 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 258.5 chr1 38891664 38892062 + 0.833333 NA intron (NM_001304746, intron 6 of 7) intron (NM_001304746, intron 6 of 7) -10237 NR_037635 100527950 Hs.591506 NR_037633 GJA9-MYCBP Cx58|Cx59|GJA10|GJA9 GJA9-MYCBP readthrough ncRNA 194.167-15 chr16 35386589 35386862 + 0.833333 NA intron (NR_027080, intron 6 of 6) HSAT6|Satellite|Satellite 23194 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 195.667-20 chr18 65602543 65603000 + 0.833333 NA Intergenic L2a|LINE|L2 -147481 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 199-34 chr4 63673676 63674209 + 0.833333 NA Intergenic Intergenic 735508 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 215-2 chr1 91139405 91139947 + 0.833333 NA Intergenic Intergenic -117421 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 199.333-3 chr1 53832241 53832613 + 0.833333 NA intron (NR_033142, intron 2 of 16) intron (NR_033142, intron 2 of 16) 5869 NM_018087 55706 Hs.476525 NM_018087 ENSG00000058804 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 214.833-27 chrX 131741503 131741966 + 0.833333 NA intron (NR_026975, intron 10 of 12) intron (NR_026975, intron 10 of 12) 88909 NR_152876 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 202.5-30 chr2 114295720 114296157 + 0.833333 NA Intergenic Intergenic -146703 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 280.667-15 chr6 78748686 78749063 + 0.833333 NA Intergenic L1MEg|LINE|L1 -118677 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 196-19 chr2 70569812 70570165 + 0.833333 NA Intergenic Intergenic -16162 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 224.333-17 chr2 19434286 19434631 + 0.833333 NA Intergenic L1MC3|LINE|L1 -75835 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 186.667-43 chr3 86267563 86268058 + 0.833333 NA Intergenic L1ME1|LINE|L1 -214133 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 241.167-23 chr4 137615726 137616039 + 0.833333 NA Intergenic AluSp|SINE|Alu 70151 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 198.833-13 chr17 49259891 49260243 + 0.833333 NA Intergenic MIRc|SINE|MIR 11824 NR_034161 124871 Hs.446890 NM_001007529 ENSG00000177369 FLJ40194 - uncharacterized FLJ40194 ncRNA 197.333-8 chr13 113458140 113458695 + 0.833333 NA intron (NM_001014283, intron 6 of 6) intron (NM_001014283, intron 6 of 6) -4929 NM_138430 113622 Hs.98669 NM_138430 ENSG00000153531 ADPRHL1 ARH2 ADP-ribosylhydrolase like 1 protein-coding 272.167-18 chr4 97592212 97592616 + 0.833333 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 225488 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 298-12 chr22 28593719 28594092 + 0.833333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 85960 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 163.333-25 chr16 77594655 77595006 + 0.833333 NA Intergenic Intergenic -127662 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 295-3 chr10 62851207 62851596 + 0.833333 NA Intergenic (CTTCCTT)n|Simple_repeat|Simple_repeat -32234 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 189-18 chr14 88165117 88165470 + 0.833333 NA Intergenic Intergenic 105618 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 309.667-21 chr7 48960191 48960985 + 0.833333 NA Intergenic Intergenic 36041 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 429.167-12 chr8 121088898 121089582 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR -277194 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 336.333-5 chr13 61255660 61256390 + 0.833333 NA Intergenic Intergenic -56145 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 205.5-21 chr3 52123271 52123581 + 0.833333 NA intron (NM_015426, intron 8 of 10) intron (NM_015426, intron 8 of 10) 30997 NM_001161581 25886 Hs.476306 NM_015426 ENSG00000164087 POC1A PIX2|SOFT|WDR51A POC1 centriolar protein A protein-coding 293.833 chr1 29041098 29041618 + 0.833333 NA intron (NM_001166007, intron 11 of 17) AluSz6|SINE|Alu 81143 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 209-5 chr10 72341259 72341780 + 0.833333 NA intron (NR_157570, intron 3 of 8) AluJo|SINE|Alu 13400 NR_157570 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 164-46 chr5 132877928 132878142 + 0.833333 NA 3' UTR (NM_014423, exon 21 of 21) 3' UTR (NM_014423, exon 21 of 21) 4367 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 259.667-2 chr11 103500659 103501195 + 0.833333 NA Intergenic L1MA2|LINE|L1 -348979 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 264-21 chr2 170181247 170181600 + 0.833333 NA intron (NM_001083615, intron 1 of 33) L1MC4a|LINE|L1 3276 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 267.333-18 chr4 77986253 77986796 + 0.833333 NA Intergenic Intergenic -70799 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 187.333-34 chr5 96603014 96603501 + 0.833333 NA intron (NR_130776, intron 4 of 4) MER65A|LTR|ERV1 -58780 NM_001190442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 207.333-28 chr3 12480007 12480283 + 0.833333 NA Intergenic L2c|LINE|L2 -4287 NM_001145394 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 170.333-46 chr5 170255584 170255865 + 0.833333 NA intron (NM_005565, intron 17 of 20) MER5A1|DNA|hAT-Charlie 22718 NM_001305394 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 223.5-16 chr2 74631917 74632457 + 0.833333 NA intron (NM_001321739, intron 2 of 10) MER76|LTR|ERVL 15850 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 224.167-5 chr11 22011252 22011542 + 0.833333 NA Intergenic Intergenic -181688 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 304.167-8 chr4 93897506 93898014 + 0.833333 NA Intergenic Intergenic 69007 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 279.667-24 chr7 9320490 9320911 + 0.833333 NA Intergenic L3|LINE|CR1 -313570 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 256.5-20 chr4 85801127 85801463 + 0.833333 NA intron (NM_001346093, intron 1 of 6) intron (NM_001346093, intron 1 of 6) 22497 NM_001042669 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 197.333-36 chr7 84301458 84301821 + 0.833333 NA Intergenic MER58A|DNA|hAT-Charlie -106850 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 167.167-9 chr10 62266441 62266975 + 0.833333 NA intron (NM_001282941, intron 1 of 4) intron (NM_001282941, intron 1 of 4) 2136 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 245.833-21 chr5 93047050 93047551 + 0.833333 NA Intergenic Intergenic 524043 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 240.5-31 chr9 83763506 83763866 + 0.833333 NA intron (NM_001135953, intron 7 of 11) intron (NM_001135953, intron 7 of 11) 54083 NM_025211 80318 Hs.522255 NM_025211 ENSG00000165113 GKAP1 FKSG21|GKAP42 G kinase anchoring protein 1 protein-coding 166.333-56 chr9 90067762 90068102 + 0.833333 NA Intergenic HAL1ME|LINE|L1 -26433 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 213-34 chr6 93785094 93785538 + 0.833333 NA Intergenic Intergenic 67013 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 180.5-26 chr3 187477935 187478334 + 0.833333 NA Intergenic MIRb|SINE|MIR 31088 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 250.333-9 chr13 23476489 23477035 + 0.833333 NA intron (NR_038995, intron 2 of 2) L1MB7|LINE|L1 7250 NR_038995 100506697 Hs.50118 NR_038995 ENSG00000232977 LINC00327 NCRNA00327 long intergenic non-protein coding RNA 327 ncRNA 205.833-20 chr3 23815320 23815770 + 0.833333 NA intron (NM_003341, intron 3 of 5) intron (NM_003341, intron 3 of 5) 5091 NM_001202476 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 186.667-60 chr7 140726560 140726911 + 0.833333 NA intron (NM_001354609, intron 18 of 18) intron (NM_001354609, intron 18 of 18) -29658 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 176.5-25 chr3 156646248 156646646 + 0.833333 NA Intergenic Intergenic -28143 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 368.333-4 chr14 24141274 24141884 + 0.833333 NA promoter-TSS (NM_001346874) promoter-TSS (NM_001346874) 12 NM_001346875 51016 Hs.271614 NM_016049 ENSG00000100908 EMC9 C14orf122|CGI-112|FAM158A ER membrane protein complex subunit 9 protein-coding 248.5-16 chr16 62228947 62229369 + 0.833333 NA Intergenic FAM|SINE|Alu -192720 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 166-65 chr8 82715718 82715923 + 0.833333 NA Intergenic Intergenic -196284 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 167.833-40 chr6 47414903 47415235 + 0.833333 NA Intergenic Intergenic -62720 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 167.833-16 chr15 54395419 54395782 + 0.833333 NA intron (NM_001329919, intron 17 of 31) intron (NM_001329919, intron 17 of 31) 382952 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 225.667-28 chr3 37080370 37080755 + 0.833333 NA intron (NM_006309, intron 19 of 27) L1MC5|LINE|L1 87212 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 259-12 chr12 45353717 45354144 + 0.833333 NA intron (NM_001025356, intron 7 of 19) HAL1|LINE|L1 61240 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 203.5-43 chr8 128941452 128941823 + 0.833333 NA Intergenic L2a|LINE|L2 24364 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 185.333-29 chr22 19121230 19121629 + 0.833333 NA intron (NM_001184781, intron 1 of 9) intron (NM_001184781, intron 1 of 9) 983 NR_033674 9993 Hs.517357 NM_005137 ENSG00000070413 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 278.167 chr1 27167615 27167987 + 0.833333 NA Intergenic AluSx|SINE|Alu -12676 NR_046474 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 175-35 chr2 214959719 214960164 + 0.833333 NA intron (NR_103740, intron 41 of 54) intron (NR_103740, intron 41 of 54) 72145 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 265.167-8 chr2 41866186 41866656 + 0.833333 NA Intergenic THE1A|LTR|ERVL-MaLR -11134 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 264.833-6 chr12 10306861 10307462 + 0.833333 NA promoter-TSS (NR_147040) promoter-TSS (NR_147040) -657 NM_007334 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 259.667-8 chr17 19769680 19770051 + 0.833333 NA TTS (NM_001142610) TTS (NM_001142610) -21567 NM_001330150 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 248.833-15 chr20 23598742 23599089 + 0.833333 NA Intergenic MER57A-int|LTR|ERV1 7058 NM_001008693 128822 Hs.698020 NM_001008693 ENSG00000173335 CST9 CLM|CTES7A cystatin 9 protein-coding 173.5-48 chr5 72915610 72915918 + 0.833333 NA 3' UTR (NM_153188, exon 25 of 25) 3' UTR (NM_153188, exon 25 of 25) 37173 NR_039968 100616152 NR_039968 ENSG00000263593 MIR4804 - microRNA 4804 ncRNA 222-18 chr2 49974049 49974446 + 0.833333 NA promoter-TSS (NM_001320156) promoter-TSS (NM_001320156) -44 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 172-15 chr14 78634863 78635261 + 0.833333 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 231343 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 205-29 chr8 127669095 127669448 + 0.833333 NA Intergenic Intergenic 64696 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 174-13 chr12 115400296 115400702 + 0.833333 NA Intergenic L1MD2|LINE|L1 -716324 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 242.667-23 chr3 14110960 14111285 + 0.833333 NA TTS (NM_144636) TTS (NM_144636) 13748 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 164-15 chr12 64221242 64221481 + 0.833333 NA intron (NM_001300941, intron 1 of 2) intron (NM_001300941, intron 1 of 2) 935 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 187-36 chr5 147156536 147157037 + 0.833333 NA Intergenic L2b|LINE|L2 -75266 NM_001271899 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 233.667-25 chr5 36302390 36302739 + 0.833333 NA promoter-TSS (NM_001161429) promoter-TSS (NM_001161429) -662 NM_145000 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 427.833-2 chr15 80090675 80091493 + 0.833333 NA intron (NM_001242912, intron 2 of 6) intron (NM_001242912, intron 2 of 6) -7332 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 171-32 chr2 139269373 139269628 + 0.833333 NA Intergenic Intergenic 372176 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 243-11 chr2 101009488 101009808 + 0.833333 NA intron (NM_001102426, intron 19 of 19) intron (NM_001102426, intron 19 of 19) 7359 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 163.667-42 chr4 42456897 42457110 + 0.833333 NA intron (NM_001105529, intron 26 of 35) intron (NM_001105529, intron 26 of 35) 59515 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 395.833-3 chr8 138459246 138460103 + 0.833333 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 37587 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 180.167-23 chr8 31795493 31795783 + 0.833333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 155886 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 252.333-15 chr7 49255353 49255796 + 0.833333 NA Intergenic Intergenic 331027 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 177.5-44 chr6 25175164 25175546 + 0.833333 NA Intergenic MER21A|LTR|ERVL -36963 NR_027626 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 185.833-16 chr2 162070167 162070521 + 0.833333 NA intron (NM_001935, intron 2 of 25) intron (NM_001935, intron 2 of 25) 3871 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 184.167-29 chr5 53761975 53762373 + 0.833333 NA Intergenic MIR|SINE|MIR 57508 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 289.333-7 chr10 82977906 82978367 + 0.833333 NA intron (NR_163253, intron 9 of 10) intron (NR_163253, intron 9 of 10) 698953 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 199.833-10 chr12 124910563 124910884 + 0.833333 NA TTS (NM_021009) TTS (NM_021009) 3927 NM_021009 7316 Hs.520348 NM_021009 ENSG00000150991 UBC HMG20 ubiquitin C protein-coding 224-40 chr5 34794565 34795092 + 0.833333 NA intron (NM_015577, intron 3 of 17) intron (NM_015577, intron 3 of 17) -44336 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 203.167-28 chr6 162499381 162499848 + 0.833333 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -227518 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 180.833-7 chr14 58157151 58157603 + 0.833333 NA Intergenic MER53|DNA|hAT -5164 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 260.667-35 chr3 115695299 115695842 + 0.833333 NA intron (NM_002045, intron 2 of 2) MIR|SINE|MIR 72060 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 182.333-20 chr5 32312781 32313161 + 0.833333 NA promoter-TSS (NM_001040446) promoter-TSS (NM_001040446) -32 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 248-9 chr10 110286413 110286795 + 0.833333 NA 3' UTR (NM_130439, exon 6 of 6) 3' UTR (NM_130439, exon 6 of 6) 18316 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 209.167-17 chr17 77022730 77023014 + 0.833333 NA Intergenic MSTA-int|LTR|ERVL-MaLR -53673 NR_136417 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 181.667-45 chr7 40055820 40056068 + 0.833333 NA intron (NM_003718, intron 7 of 13) intron (NM_003718, intron 7 of 13) 78678 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 253.833-11 chr4 44666713 44667187 + 0.833333 NA Intergenic Intergenic -11445 NM_001345868 60558 Hs.546419 NM_021927 ENSG00000151806 GUF1 EF-4|EF4|EIEE40 GUF1 homolog, GTPase protein-coding 271.833 chr1 49170689 49171295 + 0.833333 NA intron (NM_001323575, intron 4 of 12) MLT1H|LTR|ERVL-MaLR -86419 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 182.667-6 chr1 188994052 188994353 + 0.833333 NA Intergenic Intergenic 1481808 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 283.333-5 chr11 112160375 112161006 + 0.833333 NA intron (NM_001243211, intron 1 of 4) intron (NM_001243211, intron 1 of 4) 3404 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 221.167-9 chr11 111907829 111908194 + 0.833333 NA TTS (NM_001368246) TTS (NM_001368246) 2728 NM_001368246 1410 Hs.53454 NM_001885 ENSG00000109846 CRYAB CMD1II|CRYA2|CTPP2|CTRCT16|HEL-S-101|HSPB5|MFM2 crystallin alpha B protein-coding 221.667-28 chr20 13710724 13711012 + 0.833333 NA Intergenic L1MD|LINE|L1 -71932 NR_136629 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 182.667-11 chr11 45135592 45135844 + 0.833333 NA intron (NM_001359633, intron 2 of 7) L1M5|LINE|L1 -11625 NM_001256695 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 197.833-5 chr1 189715614 189715900 + 0.833333 NA Intergenic L1MC4a|LINE|L1 760253 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 200.5-21 chr17 54124488 54124790 + 0.833333 NA Intergenic Intergenic 301712 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 192.167-40 chr8 118091634 118091955 + 0.833333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 20025 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 172.167-19 chr4 59033346 59033638 + 0.833333 NA intron (NR_133942, intron 1 of 1) L1MA3|LINE|L1 19919 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 203.167-35 chr8 123416083 123416510 + 0.833333 NA promoter-TSS (NM_001283024) promoter-TSS (NM_001283024) -429 NM_001283024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 174 chr1 55815311 55815557 + 0.833333 NA Intergenic Intergenic 129529 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 188.5-43 chr6 163006230 163006569 + 0.833333 NA intron (NM_001080379, intron 2 of 4) L1MEc|LINE|L1 47762 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 180.833-10 chr17 43388128 43388419 + 0.833333 NA intron (NR_027413, intron 1 of 3) intron (NR_027413, intron 1 of 3) 625 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 168.5-30 chr3 20613902 20614336 + 0.833333 NA Intergenic L1M4c|LINE|L1 271651 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 348.167-10 chr5 102825071 102825907 + 0.833333 NA intron (NM_001364582, intron 1 of 24) intron (NM_001364582, intron 1 of 24) 17291 NM_001364582 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 263.667-18 chr5 95644413 95644901 + 0.833333 NA Intergenic Intergenic -2120 NM_001131066 317671 Hs.399758 NM_173362 ENSG00000175449 RFESD - Rieske Fe-S domain containing protein-coding 207.167-23 chr6 41963441 41963952 + 0.833333 NA intron (NM_001136017, intron 1 of 4) MIR|SINE|MIR -21848 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 233.833-2 chr1 222546245 222546760 + 0.833333 NA intron (NM_024746, intron 1 of 8) intron (NM_024746, intron 1 of 8) 1602 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 175.667-5 chr1 233109347 233109711 + 0.833333 NA intron (NM_014801, intron 21 of 33) L1MCa|LINE|L1 158687 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 188.333-33 chr6 27720166 27720493 + 0.833333 NA Intergenic Intergenic 26250 NR_038292 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 185.167-30 chr8 129951247 129951519 + 0.833333 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) -11572 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 255-16 chr16 74695939 74696290 + 0.833333 NA intron (NM_001142497, intron 1 of 5) MLT1J2|LTR|ERVL-MaLR 4748 NM_152649 197259 Hs.119878 NM_152649 ENSG00000168404 MLKL hMLKL mixed lineage kinase domain like pseudokinase protein-coding 294-14 chr5 25640279 25640805 + 0.833333 NA Intergenic Intergenic 449589 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 166.333-29 chr2 11391751 11392124 + 0.833333 NA Intergenic Intergenic -2044 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 184-40 chr5 54312869 54313216 + 0.833333 NA Intergenic Intergenic -2469 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 175.5-23 chr15 51907455 51907800 + 0.833333 NA intron (NM_014547, intron 9 of 9) MIRb|SINE|MIR 16493 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 202.5-32 chr2 219171304 219171750 + 0.833333 NA TTS (NM_015680) TTS (NM_015680) -1498 NM_001144890 151295 Hs.124565 NM_144712 ENSG00000213901 SLC23A3 E2BP3|SVCT3|Yspl1 solute carrier family 23 member 3 protein-coding 233.167-16 chr4 127992146 127992743 + 0.833333 NA intron (NM_001039717, intron 4 of 10) AluSq2|SINE|Alu -26481 NM_152778 256471 Hs.480701 NM_152778 ENSG00000164073 MFSD8 CCMD|CLN7 major facilitator superfamily domain containing 8 protein-coding 179.833-5 chr10 21265456 21265821 + 0.833333 NA Intergenic LTR16C|LTR|ERVL 91336 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 164.333-9 chr11 7113735 7114075 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 24907 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 219.833-20 chr22 28588224 28588638 + 0.833333 NA intron (NM_001145418, intron 2 of 22) L1MCc|LINE|L1 91434 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 179.5-43 chr6 109513851 109514091 + 0.833333 NA intron (NM_001145128, intron 32 of 40) LTR26E|LTR|ERV1 -30734 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 234.333-10 chr13 47274505 47275074 + 0.833333 NA Intergenic MLT2C2|LTR|ERVL -377713 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 202.167-11 chr12 119446736 119447033 + 0.833333 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 112155 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 183.333-7 chr1 209311439 209311876 + 0.833333 NA Intergenic L1PA13|LINE|L1 -13799 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 201.333-46 chr7 24606009 24606275 + 0.833333 NA intron (NM_001303037, intron 1 of 11) intron (NM_001303037, intron 1 of 11) 32690 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 218-27 chr3 106570602 106570919 + 0.833333 NA Intergenic MER68|LTR|ERVL 669878 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 175.167-35 chr4 73445486 73445808 + 0.833333 NA intron (NM_001354717, intron 7 of 14) L2c|LINE|L2 9426 NM_001134 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 297.667-23 chr8 30547172 30547634 + 0.833333 NA exon (NM_001008712, exon 7 of 7) exon (NM_001008712, exon 7 of 7) -91177 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 325-3 chr11 47927648 47928261 + 0.833333 NA Intergenic AluSx|SINE|Alu -52605 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 251.334-3 chr10 84411507 84412193 + 0.833333 NA intron (NM_018999, intron 3 of 10) L1PA11|LINE|L1 -13089 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 265.5-19 chr3 95784889 95785423 + 0.833333 NA Intergenic (AATGTAA)n|Simple_repeat|Simple_repeat -101963 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 207.167-26 chr7 45954492 45954968 + 0.833333 NA Intergenic L1ME2|LINE|L1 -33458 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 209.833-23 chr7 29285299 29285711 + 0.833333 NA intron (NM_001293072, intron 1 of 12) L3|LINE|CR1 -76535 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 164.833-14 chr4 67513325 67513728 + 0.833333 NA intron (NR_155754, intron 8 of 18) intron (NR_155754, intron 8 of 18) 31977 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 164.167-30 chr20 51614671 51614953 + 0.833333 NA intron (NM_006045, intron 22 of 27) L1MC4|LINE|L1 -51973 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 212.833-5 chr1 172355357 172355764 + 0.833333 NA intron (NM_015569, intron 17 of 20) MER63A|DNA|hAT-Blackjack -65125 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 164.5-21 chr17 42677094 42677378 + 0.833333 NA promoter-TSS (NM_024927) promoter-TSS (NM_024927) -242 NM_024927 79990 Hs.632251 NM_024927 ENSG00000068137 PLEKHH3 - pleckstrin homology, MyTH4 and FERM domain containing H3 protein-coding 315.833-14 chr9 106912733 106913487 + 0.833333 NA intron (NM_001347997, intron 1 of 12) intron (NM_001347997, intron 1 of 12) 49944 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 168.333-24 chr15 83441945 83442370 + 0.833333 NA Intergenic AluJb|SINE|Alu -5071 NM_001324182 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 193 chr1 23800831 23801273 + 0.833333 NA promoter-TSS (NM_000403) promoter-TSS (NM_000403) -298 NM_001008216 2582 Hs.632380 NM_000403 ENSG00000117308 GALE SDR1E1 UDP-galactose-4-epimerase protein-coding 261.833-6 chr14 73508820 73509202 + 0.833333 NA intron (NM_001220484, intron 8 of 17) AluJo|SINE|Alu 18078 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 302.333-10 chr3 190014939 190015396 + 0.833333 NA intron (NM_001134418, intron 1 of 14) AluJr|SINE|Alu 105730 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 225.667-13 chr15 77385249 77385669 + 0.833333 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 34645 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 252.833-11 chr4 76051413 76051858 + 0.833333 NA intron (NM_001130017, intron 1 of 9) AluJb|SINE|Alu -15565 NM_001302123 6373 Hs.632592 NM_005409 ENSG00000169248 CXCL11 H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 C-X-C motif chemokine ligand 11 protein-coding 183.667-49 chr6 61757250 61757575 + 0.833333 NA intron (NR_146874, intron 6 of 13) L1MEc|LINE|L1 183282 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 208.5-4 chr11 26234427 26234893 + 0.833333 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 45537 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 198.833-31 chr8 32383213 32383660 + 0.833333 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -57310 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 175.5-48 chr6 56713251 56713785 + 0.833333 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -70629 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 165.667-35 chr3 23613888 23614312 + 0.833333 NA Intergenic L1MB7|LINE|L1 -191855 NM_182666 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 217-35 chr8 132067476 132067913 + 0.833333 NA intron (NM_001145095, intron 14 of 15) intron (NM_001145095, intron 14 of 15) -8312 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 214.333-8 chr11 93783943 93784200 + 0.833333 NA promoter-TSS (NM_004268) promoter-TSS (NM_004268) -211 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|SRB4|TRAP80 mediator complex subunit 17 protein-coding 171.833-32 chr9 33224035 33224435 + 0.833333 NA Intergenic Intergenic -15932 NM_014471 27290 Hs.555934 NM_014471 ENSG00000122711 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 216-41 chr5 153672425 153672940 + 0.833333 NA intron (NM_000827, intron 5 of 15) intron (NM_000827, intron 5 of 15) 180510 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 280-24 chr9 96089280 96089822 + 0.833333 NA intron (NR_033838, intron 1 of 8) intron (NR_033838, intron 1 of 8) 23712 NR_033838 158435 Hs.652615 NR_033838 LOC158435 - uncharacterized LOC158435 ncRNA 167.833-30 chr21 33839410 33839740 + 0.833333 NA intron (NM_001331010, intron 28 of 38) intron (NM_001331010, intron 28 of 38) 76229 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 234-30 chr6 16134820 16135281 + 0.833333 NA intron (NM_013262, intron 2 of 6) intron (NM_013262, intron 2 of 6) 5964 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 170.667-33 chr3 168239379 168239667 + 0.833333 NA Intergenic HAL1|LINE|L1 -9999 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 168.667-18 chr14 100241643 100242234 + 0.833333 NA intron (NM_003403, intron 1 of 4) AluSx1|SINE|Alu 2794 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 197.167-10 chr14 29485919 29486203 + 0.833333 NA Intergenic Intergenic 441035 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 239.333-26 chr6 11459675 11460215 + 0.833333 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -77597 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 215-20 chr2 105337883 105338393 + 0.833333 NA intron (NM_001286537, intron 1 of 4) MIR3|SINE|MIR 598 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 210.333-35 chr8 139266603 139267077 + 0.833333 NA Intergenic Intergenic -352799 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 274.833-12 chr5 59322003 59322437 + 0.833333 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 34750 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 209.833-22 chr7 2752637 2753076 + 0.833333 NA intron (NM_007353, intron 2 of 3) L1MD2|LINE|L1 10284 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 296-3 chr10 17321493 17322072 + 0.833333 NA intron (NM_001004470, intron 7 of 7) L1ME3A|LINE|L1 -65154 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 314.333-7 chr4 37367730 37368298 + 0.833333 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -85911 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 167.167-18 chr17 59618901 59619138 + 0.833333 NA promoter-TSS (NM_004859) promoter-TSS (NM_004859) -670 NM_001288653 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 216.333-14 chr12 68754949 68755397 + 0.833333 NA intron (NM_018656, intron 3 of 4) MLT1A0|LTR|ERVL-MaLR 8997 NM_018656 55508 Hs.506011 NM_018656 ENSG00000175782 SLC35E3 BLOV1 solute carrier family 35 member E3 protein-coding 194.5-47 chr7 120202867 120203362 + 0.833333 NA Intergenic Intergenic -70061 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 233-22 chr5 7121733 7122230 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 147373 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 215.667-24 chr2 189933685 189934073 + 0.833333 NA Intergenic Intergenic 128850 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 333.833-4 chr14 47836590 47837527 + 0.833333 NA Intergenic L1MB8|LINE|L1 -42044 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 223.833-18 chr6 123723999 123724455 + 0.833333 NA Intergenic MIRc|SINE|MIR -79619 NM_153355 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 475.833-5 chr2 60565340 60566280 + 0.833333 NA Intergenic Intergenic -12156 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 175.833-25 chr2 232287796 232288082 + 0.833333 NA intron (NR_046477, intron 12 of 18) intron (NR_046477, intron 12 of 18) -90812 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|ALPI|IAP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 181.5-52 chr7 128995185 128995594 + 0.833333 NA intron (NM_001191028, intron 8 of 21) intron (NM_001191028, intron 8 of 21) 54121 NM_001364314 3663 Hs.521181 NM_032643 ENSG00000128604 IRF5 SLEB10 interferon regulatory factor 5 protein-coding 218-37 chr6 26320903 26321242 + 0.833333 NA Intergenic Intergenic -35573 NM_003543 8365 Hs.591790 NM_003543 ENSG00000158406 HIST1H4H H4/h|H4FH histone cluster 1 H4 family member h protein-coding 187.333-8 chr10 54244482 54244761 + 0.833333 NA intron (NM_001354411, intron 8 of 34) LTR103_Mam|LTR|ERV1? -241609 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 195-12 chr13 50954608 50954930 + 0.833333 NA intron (NM_024570, intron 10 of 10) intron (NM_024570, intron 10 of 10) -44057 NR_046552 100874255 Hs.741501 NR_046552 RNASEH2B-AS1 - RNASEH2B antisense RNA 1 ncRNA 280-6 chr13 29435350 29435966 + 0.833333 NA intron (NM_015233, intron 1 of 8) intron (NM_015233, intron 1 of 8) 6998 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 178-28 chr3 184688936 184689277 + 0.833333 NA Intergenic Zaphod2|DNA|hAT-Tip100 22958 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 220.833-29 chr9 27174522 27174982 + 0.833333 NA intron (NM_001290077, intron 6 of 21) intron (NM_001290077, intron 6 of 21) 65611 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 198.5-18 chr18 12152620 12153125 + 0.833333 NA Intergenic AluYj4|SINE|Alu -47907 NR_049896 497259 Hs.451609 NR_049896 C18orf61 - uncharacterized LOC497259 ncRNA 181-32 chr4 136569083 136569371 + 0.833333 NA Intergenic Intergenic -624529 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 229.833-22 chr6 62430078 62430493 + 0.833333 NA Intergenic Intergenic -144058 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 188.333-36 chr6 151625836 151626295 + 0.833333 NA Intergenic Intergenic -64431 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 261.833-7 chr16 75655442 75655954 + 0.833333 NA intron (NR_144545, intron 2 of 2) L2a|LINE|L2 7925 NM_018975 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 171.667-56 chr7 37936780 37937027 + 0.833333 NA intron (NM_001242948, intron 1 of 2) L1MC5|LINE|L1 15584 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 168.5-21 chr16 81076409 81076782 + 0.833333 NA intron (NM_152337, intron 1 of 3) intron (NM_152337, intron 1 of 3) 672 NM_001100873 123775 Hs.658684 NM_152337 ENSG00000166455 C16orf46 - chromosome 16 open reading frame 46 protein-coding 239.833-17 chr7 85383937 85384336 + 0.833333 NA Intergenic Intergenic -36986 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 190.5 chr1 40967338 40967726 + 0.833333 NA Intergenic AluJr4|SINE|Alu -12164 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 211.833-4 chr12 79880849 79881302 + 0.833333 NA intron (NM_001244990, intron 2 of 24) Tigger1|DNA|TcMar-Tigger 32836 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 306.667-5 chr12 130749921 130750340 + 0.833333 NA Intergenic MER4B|LTR|ERV1 -33825 NM_001351233 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 252.5-10 chr17 40597177 40597615 + 0.833333 NA Intergenic Intergenic -31924 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 243.5-2 chr10 26891557 26892028 + 0.833333 NA Intergenic L1PA7|LINE|L1 -30705 NM_001178122 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 168.167-7 chr11 99696849 99697174 + 0.833333 NA intron (NM_175566, intron 1 of 21) L1MC3|LINE|L1 140866 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 244.333-5 chr11 14913509 14913861 + 0.833333 NA Intergenic L2c|LINE|L2 -21480 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 180.5-42 chr7 137508681 137508935 + 0.833333 NA intron (NM_001321710, intron 21 of 32) MER67D|LTR|ERV1 -165075 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 211.5-44 chr7 106086627 106087163 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 25417 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 172.167-21 chr5 78185312 78185542 + 0.833333 NA intron (NM_003664, intron 7 of 26) L1MD1|LINE|L1 109271 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 197.5-4 chr10 62856085 62856515 + 0.833333 NA Intergenic Intergenic -37133 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 227.5-13 chr13 93249364 93249717 + 0.833333 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 22733 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 201.667-41 chr4 81217011 81217396 + 0.833333 NA Intergenic Charlie9|DNA|hAT-Charlie -1981 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 187-3 chr1 102880340 102880789 + 0.833333 NA intron (NM_001854, intron 65 of 66) intron (NM_001854, intron 65 of 66) 227932 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 209.667-40 chr6 79672809 79673074 + 0.833333 NA intron (NM_031469, intron 1 of 3) intron (NM_031469, intron 1 of 3) 41612 NM_031469 83699 Hs.302772 NM_031469 ENSG00000198478 SH3BGRL2 - SH3 domain binding glutamate rich protein like 2 protein-coding 221.833-12 chr17 76399114 76399462 + 0.833333 NA intron (NM_022066, intron 9 of 17) intron (NM_022066, intron 9 of 17) 14010 NM_001142602 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 268.833-5 chr12 111208940 111209342 + 0.833333 NA intron (NM_001370598, intron 1 of 21) L1ME3|LINE|L1 -95001 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 222.167-7 chr12 88140718 88141104 + 0.833333 NA intron (NM_025114, intron 3 of 53) intron (NM_025114, intron 3 of 53) 1305 NM_025114 80184 Hs.150444 NM_025114 ENSG00000198707 CEP290 3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16 centrosomal protein 290 protein-coding 211.167-14 chr3 95119157 95119576 + 0.833333 NA Intergenic L1MC1|LINE|L1 181103 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 241.5-19 chr6 62630528 62630856 + 0.833333 NA Intergenic Intergenic -344465 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 175.833-2 chr1 154074731 154075154 + 0.833333 NA intron (NM_001159484, intron 16 of 37) L1PB4|LINE|L1 29650 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 320.833-6 chr3 179363757 179364439 + 0.833333 NA intron (NM_033540, intron 5 of 17) intron (NM_033540, intron 5 of 17) 16389 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 229.167-8 chr10 51062762 51063220 + 0.833333 NA intron (NR_120678, intron 1 of 1) intron (NR_120678, intron 1 of 1) 5561 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 319.167-10 chr2 48449041 48449756 + 0.833333 NA intron (NR_024188, intron 1 of 21) MIRc|SINE|MIR 8629 NM_001193475 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 184.167-37 chrX 133792589 133792912 + 0.833333 NA intron (NM_001164619, intron 1 of 6) intron (NM_001164619, intron 1 of 6) -104693 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 195.167-27 chr2 111170502 111170799 + 0.833333 NA Intergenic AluYe5|SINE|Alu 49736 NM_207003 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 221.833-4 chr10 101089767 101090206 + 0.833333 NA non-coding (NR_130722, exon 3 of 3) non-coding (NR_130722, exon 3 of 3) 23687 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 240-36 chr3 12144073 12144373 + 0.833333 NA intron (NM_133625, intron 3 of 12) intron (NM_133625, intron 3 of 12) 14689 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 187.5-43 chr8 90248548 90248886 + 0.833333 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 27229 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 181.5-18 chr14 83546247 83546493 + 0.833333 NA Intergenic Intergenic 903738 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 182.667-39 chr4 102082315 102082778 + 0.833333 NA Intergenic MLT2A2|LTR|ERVL 241766 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 229.667-49 chrX 47123174 47123482 + 0.833333 NA Intergenic Intergenic 21882 NM_001135998 54539 Hs.521969 NM_019056 ENSG00000147123 NDUFB11 CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3 NADH:ubiquinone oxidoreductase subunit B11 protein-coding 181.5-34 chr4 121202303 121202576 + 0.833333 NA intron (NM_001128843, intron 2 of 12) L1PB1|LINE|L1 14188 NM_001128843 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 197.5-6 chr11 78030554 78031031 + 0.833333 NA intron (NM_001203261, intron 2 of 2) intron (NM_001203261, intron 2 of 2) -7516 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 176.167-35 chr6 4941978 4942259 + 0.833333 NA intron (NM_001143971, intron 4 of 6) intron (NM_001143971, intron 4 of 6) 52078 NM_001143971 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 174.167-39 chr7 25731935 25732359 + 0.833333 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 18885 NR_157814 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 271.167 chr1 59151187 59151773 + 0.833333 NA Intergenic Intergenic -4673 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 286.167-2 chr1 216331126 216331518 + 0.833333 NA intron (NM_206933, intron 4 of 71) intron (NM_206933, intron 4 of 71) 92074 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 305.5 chr1 47388526 47389172 + 0.833333 NA intron (NR_126355, intron 3 of 4) intron (NR_126355, intron 3 of 4) -27436 NM_012186 2301 Hs.112968 NM_012186 ENSG00000186790 FOXE3 AAT11|ASGD2|CTRCT34|FKHL12|FREAC8 forkhead box E3 protein-coding 232.833-5 chr1 147084480 147084997 + 0.833333 NA promoter-TSS (NR_121645) promoter-TSS (NR_121645) 18 NR_121645 101447996 NR_121645 ENSG00000286172 RNVU1-8 RNU1-145|vU1.8 RNA, variant U1 small nuclear 8 snRNA 342.833-5 chr14 75126579 75127126 + 0.833333 NA exon (NM_001329237, exon 1 of 22) exon (NM_001329237, exon 1 of 22) 196 NM_001329238 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 249.667-36 chrX 119482494 119482819 + 0.833333 NA Intergenic CpG -13536 NR_028443 100303728 Hs.714405 NR_028443 ENSG00000224281 SLC25A5-AS1 - SLC25A5 antisense RNA 1 ncRNA 163.833-39 chr7 24401945 24402217 + 0.833333 NA Intergenic Intergenic 117891 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 216.333-38 chr6 53104427 53104722 + 0.833333 NA Intergenic Intergenic 33601 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 207.333-24 chr20 17897758 17898061 + 0.833333 NA Intergenic L1MA6|LINE|L1 65037 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 224.5-33 chr4 181532937 181533225 + 0.833333 NA Intergenic Intergenic -268052 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 180-4 chr1 247659445 247659827 + 0.833333 NA Intergenic L1MA8|LINE|L1 13405 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 172.333 chr1 21550058 21550476 + 0.833333 NA intron (NM_001177520, intron 1 of 9) intron (NM_001177520, intron 1 of 9) -1003 NM_001369803 249 Hs.75431 NM_000478 ENSG00000162551 ALPL AP-TNAP|APTNAP|HOPS|TNALP|TNAP|TNSALP alkaline phosphatase, biomineralization associated protein-coding 216.667-36 chr5 4755819 4756276 + 0.833333 NA Intergenic L1MC3|LINE|L1 -17434 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 247.5-11 chr14 54981433 54982430 + 0.833333 NA intron (NM_007086, intron 15 of 25) intron (NM_007086, intron 15 of 25) 45168 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 213.333-23 chr3 103360010 103360447 + 0.833333 NA Intergenic Intergenic 163888 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 171-42 chr3 76023311 76023704 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -237958 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 328.833-4 chr13 20125056 20125754 + 0.833333 NA Intergenic Intergenic 22704 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 202.5-51 chr8 125091190 125091715 + 0.833333 NA promoter-TSS (NM_001349485) promoter-TSS (NM_001349485) 340 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 201.333-33 chr22 34841174 34841534 + 0.833333 NA intron (NR_138042, intron 3 of 4) MIR3|SINE|MIR 156562 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 300.167-10 chr3 179009131 179009694 + 0.833333 NA Intergenic L1MA2|LINE|L1 62397 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 272.167-6 chr12 48956887 48957555 + 0.833333 NA intron (NM_001659, intron 1 of 4) CpG 266 NM_001659 377 Hs.119177 NM_001659 ENSG00000134287 ARF3 - ADP ribosylation factor 3 protein-coding 171.667-52 chr6 51560576 51560877 + 0.833333 NA Intergenic MIR|SINE|MIR -61144 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 281.5-18 chr5 43533170 43533590 + 0.833333 NA intron (NM_006451, intron 9 of 10) intron (NM_006451, intron 9 of 10) -18232 NM_198566 375444 Hs.661641 NM_198566 ENSG00000172244 C5orf34 - chromosome 5 open reading frame 34 protein-coding 179.667-48 chr8 90877884 90878203 + 0.833333 NA intron (NM_022351, intron 4 of 12) AluSx3|SINE|Alu 86268 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 275-15 chr2 19838884 19839265 + 0.833333 NA Intergenic L2a|LINE|L2 -29780 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 195.833-23 chr7 26186815 26187297 + 0.833333 NA TTS (NM_004289) TTS (NM_004289) 13690 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 229.333-11 chr12 62876944 62877485 + 0.833333 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 57936 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 253.5-18 chr20 50236090 50236661 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -31111 NM_001278655 100506115 Hs.235484 NM_001278655 SMIM25 GCRL1|LINC01272 small integral membrane protein 25 protein-coding 196.833-23 chr5 157284204 157284645 + 0.833333 NA intron (NM_014376, intron 1 of 30) L1M5|LINE|L1 15100 NM_014376 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 337.667-15 chr5 43483410 43483887 + 0.833333 NA intron (NM_022483, intron 1 of 2) CpG 217 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 238.834-2 chr14 31207518 31208100 + 0.833333 NA promoter-TSS (NM_015382) promoter-TSS (NM_015382) -16 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 239.833-8 chr20 49699755 49700332 + 0.833333 NA intron (NM_004776, intron 1 of 8) MER4A|LTR|ERV1 13835 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 185.333-43 chr6 67407876 67408233 + 0.833333 NA Intergenic HUERS-P1-int|LTR|ERV1 -647297 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 220.167-15 chr14 84387359 84387683 + 0.833333 NA Intergenic L1MB1|LINE|L1 -884411 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 231.333-12 chr12 7859871 7860468 + 0.833333 NA intron (NM_001286237, intron 1 of 9) intron (NM_001286237, intron 1 of 9) 12746 NM_001286233 144195 Hs.655169 NM_153449 ENSG00000173262 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 member 14 protein-coding 213.167-13 chr2 39074781 39075061 + 0.833333 NA intron (NM_005633, intron 1 of 22) intron (NM_005633, intron 1 of 22) 45542 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 234-16 chr14 97264795 97265382 + 0.833333 NA Intergenic L5|LINE|RTE-X 110231 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 172.833-4 chr10 30338335 30338793 + 0.833333 NA intron (NM_018109, intron 3 of 8) AluSq2|SINE|Alu 10774 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 229.667-42 chr7 47061551 47061916 + 0.833333 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -364611 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 229-16 chr22 44561656 44562269 + 0.833333 NA Intergenic L1MEc|LINE|L1 -7378 NR_028411 388910 Hs.332685 NM_001012986 ENSG00000187012 LINC00207 NCRNA00207 long intergenic non-protein coding RNA 207 ncRNA 205.333-3 chr1 216001169 216001512 + 0.833333 NA intron (NM_206933, intron 32 of 71) intron (NM_206933, intron 32 of 71) -71125 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 274-28 chr6 136498851 136499253 + 0.833333 NA intron (NM_001198617, intron 1 of 15) AluSx|SINE|Alu 27161 NM_001198611 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 363.5-6 chr3 38023574 38024146 + 0.833333 NA intron (NM_006225, intron 1 of 14) intron (NM_006225, intron 1 of 14) 660 NM_001130964 5333 Hs.80776 NM_006225 ENSG00000187091 PLCD1 NDNC3|PLC-III phospholipase C delta 1 protein-coding 235.167-10 chr13 29984009 29984488 + 0.833333 NA Intergenic L1PA16|LINE|L1 47717 NR_033889 440131 Hs.132371 NM_001010918 LINC00544 - long intergenic non-protein coding RNA 544 ncRNA 200-44 chr8 70985377 70985742 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 316220 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 169.333-25 chr15 99123857 99124141 + 0.833333 NA intron (NM_145728, intron 2 of 3) intron (NM_145728, intron 2 of 3) 18919 NM_015286 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 165.667-6 chr10 51771705 51772014 + 0.833333 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -72264 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 222.333-30 chr7 77416629 77417122 + 0.833333 NA promoter-TSS (NM_001350899) promoter-TSS (NM_001350899) -526 NM_001350900 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 286.333-15 chr8 89756233 89756871 + 0.833333 NA intron (NR_125822, intron 1 of 4) AluSg|SINE|Alu 1159 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 235.667-29 chr9 10341940 10342523 + 0.833333 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 270771 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 238.167-5 chr11 28760918 28761229 + 0.833333 NA Intergenic MER73|LTR|ERVL -283525 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 178.167-27 chr8 30229418 30229739 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 73209 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 179.667-35 chr4 164473322 164473564 + 0.833333 NA Intergenic L1MA2|LINE|L1 -90188 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 180.333-59 chr9 115523703 115524058 + 0.833333 NA Intergenic Intergenic 220359 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 229.5-18 chr2 63880869 63881219 + 0.833333 NA intron (NM_001001521, intron 3 of 9) intron (NM_001001521, intron 3 of 9) 39164 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 275.167-9 chr14 45664173 45664514 + 0.833333 NA Intergenic L1PA14|LINE|L1 51259 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 208.333-38 chr6 165153976 165154400 + 0.833333 NA Intergenic L1MC4|LINE|L1 155417 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 237.5-7 chr12 2034814 2035619 + 0.833333 NA Intergenic Intergenic -13136 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 197.5-35 chr8 8301198 8301447 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 72752 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 233.667-28 chr6 27542308 27542711 + 0.833333 NA Intergenic Intergenic -69391 NM_007149 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 202.667-19 chr2 78026211 78026500 + 0.833333 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -62375 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 176.833-35 chr7 4376009 4376335 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -241335 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 165.5-19 chr17 47067567 47067974 + 0.833333 NA Intergenic HERVIP10FH-int|LTR|ERV1 -88517 NM_203400 388394 Hs.367999 NM_203400 ENSG00000179673 RPRML - reprimo like protein-coding 220.667-3 chr1 178055900 178056293 + 0.833333 NA Intergenic L2b|LINE|L2 -18089 NR_151485 730102 Hs.733192 NR_037167 ENSG00000242193 CRYZL2P - crystallin zeta like 2, pseudogene pseudo 219.667-12 chr17 11705714 11706139 + 0.833333 NA intron (NM_001372, intron 26 of 68) intron (NM_001372, intron 26 of 68) 107456 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 170.5 chr1 16137580 16137914 + 0.833333 NA intron (NM_004431, intron 5 of 16) MIR|SINE|MIR 18322 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 170.167-11 chr13 33567557 33567785 + 0.833333 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 109123 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 164.667-31 chr2 234683720 234683992 + 0.833333 NA intron (NR_132376, intron 1 of 2) MER4CL34|LTR|ERV1 1188 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 201.167-9 chr13 59391585 59391853 + 0.833333 NA Intergenic LTR50|LTR|ERVL -620999 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 203.333-49 chr5 80666851 80667114 + 0.833333 NA intron (NM_002439, intron 3 of 23) intron (NM_002439, intron 3 of 23) -11999 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 192.833-6 chr10 64483217 64483492 + 0.833333 NA Intergenic Intergenic -342174 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 164-35 chr2 105790018 105790356 + 0.833333 NA intron (NM_003581, intron 1 of 4) intron (NM_003581, intron 1 of 4) 45124 NM_001004722 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 298.166 chr1 178239701 178240298 + 0.833333 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -101452 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 243.5-21 chr3 31941816 31942425 + 0.833333 NA intron (NM_001174060, intron 1 of 10) AluY|SINE|Alu -39630 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 303-2 chr10 31415389 31415853 + 0.833333 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -15866 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 168-14 chr12 123730786 123731365 + 0.833333 NA intron (NM_012463, intron 6 of 19) intron (NM_012463, intron 6 of 19) 18722 NM_012463 23545 Hs.25786 NM_012463 ENSG00000185344 ATP6V0A2 A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS ATPase H+ transporting V0 subunit a2 protein-coding 178.333-24 chr22 27546200 27546657 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR 235777 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 210.167-21 chr2 155241526 155241965 + 0.833333 NA Intergenic Intergenic 543050 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 193.167-30 chr8 3402999 3403278 + 0.833333 NA intron (NM_033225, intron 15 of 69) intron (NM_033225, intron 15 of 69) -674687 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 294.5-25 chr7 116139015 116139505 + 0.833333 NA Intergenic Intergenic -71279 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 172.167-5 chr11 91956035 91956378 + 0.833333 NA Intergenic Intergenic -268828 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 217.833-12 chr17 69253644 69254088 + 0.833333 NA exon (NM_172232, exon 33 of 39) exon (NM_172232, exon 33 of 39) -9051 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 212.167-9 chr16 71536595 71537048 + 0.833333 NA exon (NM_005769, exon 2 of 2) exon (NM_005769, exon 2 of 2) 10395 NM_001166395 10164 Hs.251383 NM_005769 ENSG00000140835 CHST4 GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST carbohydrate sulfotransferase 4 protein-coding 220.167-14 chr14 82085356 82085870 + 0.833333 NA Intergenic Intergenic -342475 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 181.5-3 chr1 64745968 64746365 + 0.833333 NA intron (NM_001366165, intron 1 of 11) L1ME4a|LINE|L1 1091 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 180.5-33 chr5 87062668 87063209 + 0.833333 NA Intergenic L1M7|LINE|L1 52016 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 174-17 chr17 69064636 69064874 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -3828 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 203.5-31 chr3 184176345 184176656 + 0.833333 NA intron (NM_001311198, intron 1 of 12) intron (NM_001311198, intron 1 of 12) 1645 NM_004068 1173 Hs.518460 NM_004068 ENSG00000161203 AP2M1 AP50|CLAPM1|mu2 adaptor related protein complex 2 subunit mu 1 protein-coding 183.5-7 chr12 53175157 53175425 + 0.833333 NA intron (NM_015989, intron 2 of 16) intron (NM_015989, intron 2 of 16) 5355 NM_015989 51380 Hs.279815 NM_015989 ENSG00000139631 CSAD CSD|PCAP cysteine sulfinic acid decarboxylase protein-coding 235.5-25 chrX 47361807 47362238 + 0.833333 NA Intergenic Intergenic -8578 NM_003446 7712 Hs.89897 NM_003446 ENSG00000147117 ZNF157 HZF22 zinc finger protein 157 protein-coding 182.667-5 chr1 174479702 174479933 + 0.833333 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 31853 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 165-20 chr14 72348658 72348955 + 0.833333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -168014 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 205.167-9 chr2 19348103 19348416 + 0.833333 NA promoter-TSS (NR_039914) promoter-TSS (NR_039914) -170 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 270.333-9 chr2 80882463 80883037 + 0.833333 NA Intergenic Intergenic 569371 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 307.167-18 chr3 95767026 95767474 + 0.833333 NA Intergenic Intergenic -84057 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 198.167-24 chr3 145724309 145724733 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR 344664 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 183.833-23 chrX 76448045 76448323 + 0.833333 NA Intergenic L1MA7|LINE|L1 20474 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 168.167-3 chr10 71345015 71345435 + 0.833333 NA intron (NM_018344, intron 3 of 5) MLT1G1|LTR|ERVL-MaLR 25966 NM_018344 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 212.333-10 chr14 28752221 28752522 + 0.833333 NA intron (NR_125758, intron 2 of 6) MIRc|SINE|MIR 12948 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 207.5-13 chr14 100031796 100032146 + 0.833333 NA intron (NM_001330221, intron 1 of 13) intron (NM_001330221, intron 1 of 13) -33451 NM_016337 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 268.833-7 chr17 28146123 28146485 + 0.833333 NA intron (NM_016231, intron 3 of 10) MIRb|SINE|MIR -80259 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 170-43 chr5 10525125 10525400 + 0.833333 NA Intergenic MARNA|DNA|TcMar-Mariner -3178 NR_134289 389273 Hs.519206 NR_134289 ENSG00000249160 LINC02213 - long intergenic non-protein coding RNA 2213 ncRNA 174.5-11 chr14 61703682 61703988 + 0.833333 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 6213 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 169.333-60 chr8 38714280 38714730 + 0.833333 NA Intergenic Intergenic -13681 NR_148053 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 173-6 chr1 244026930 244027333 + 0.833333 NA intron (NR_033883, intron 7 of 11) intron (NR_033883, intron 7 of 11) -21808 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 232.667-4 chr1 183535665 183536235 + 0.833333 NA intron (NM_001331007, intron 11 of 23) intron (NM_001331007, intron 11 of 23) 54654 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 166.167-27 chr3 179811367 179811753 + 0.833333 NA intron (NR_146167, intron 10 of 13) intron (NR_146167, intron 10 of 13) -86634 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 199.333-16 chr14 54206100 54206510 + 0.833333 NA Intergenic L4_B_Mam|LINE|RTE-X -190563 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 163.167 chr1 10066928 10067353 + 0.833333 NA intron (NM_006048, intron 1 of 26) intron (NM_006048, intron 1 of 26) 34182 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 168-42 chr5 34459989 34460190 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 -196239 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 183.5-32 chr3 193041716 193042093 + 0.833333 NA Intergenic Intergenic -124048 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 322.833-3 chr2 143630525 143631150 + 0.833333 NA intron (NM_018460, intron 12 of 13) L1ME1|LINE|L1 -306230 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 183.667-21 chr17 47337575 47337924 + 0.833333 NA intron (NM_001195192, intron 5 of 21) LTR56|LTR|ERV1 13794 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 224-27 chr20 4745085 4745465 + 0.833333 NA Intergenic L1ME3|LINE|L1 -4607 NR_024267 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 344.167-3 chr11 86919563 86920176 + 0.833333 NA intron (NR_120592, intron 2 of 2) intron (NR_120592, intron 2 of 2) 35526 NM_012193 8322 Hs.591968 NM_012193 ENSG00000174804 FZD4 CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4 frizzled class receptor 4 protein-coding 303.667-4 chr14 66343271 66343891 + 0.833333 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -142790 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 186-34 chr5 87373060 87373469 + 0.833333 NA intron (NM_022650, intron 13 of 24) MER2B|DNA|TcMar-Tigger 39640 NM_001199189 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 183.5-11 chr14 21128733 21129063 + 0.833333 NA Intergenic L1MA3|LINE|L1 -24194 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 172.167-20 chr4 168641051 168641495 + 0.833333 NA intron (NM_001166109, intron 1 of 18) MER5A|DNA|hAT-Charlie 9695 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 192.5-43 chr5 159426175 159426490 + 0.833333 NA Intergenic Intergenic 39944 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 170.167-5 chr1 237708308 237708706 + 0.833333 NA intron (NM_001035, intron 68 of 104) intron (NM_001035, intron 68 of 104) -153668 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 234.667-15 chr17 78951003 78951435 + 0.833333 NA Intergenic AluJo|SINE|Alu -25832 NM_003255 7077 Hs.633514 NM_003255 ENSG00000035862 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 211.167-20 chr5 35724767 35725261 + 0.833333 NA intron (NM_024867, intron 20 of 36) intron (NM_024867, intron 20 of 36) 107151 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 218.833-29 chrX 36115029 36115510 + 0.833333 NA intron (NM_001304548, intron 33 of 63) intron (NM_001304548, intron 33 of 63) 195535 NM_001304548 286464 Hs.376425 NM_152632 ENSG00000165164 CFAP47 CHDC2|CXorf22|CXorf30|CXorf59 cilia and flagella associated protein 47 protein-coding 175-25 chr2 36583409 36583699 + 0.833333 NA intron (NM_005102, intron 2 of 7) intron (NM_005102, intron 2 of 7) 14614 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 180.5-9 chr10 111605558 111605810 + 0.833333 NA Intergenic Intergenic 491393 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 207.667-12 chr13 71913538 71913915 + 0.833333 NA Intergenic Intergenic -46522 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 226.167-4 chr10 95625414 95625730 + 0.833333 NA intron (NM_001323414, intron 10 of 17) intron (NM_001323414, intron 10 of 17) 31139 NM_002860 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 215.5-28 chr8 78039229 78039627 + 0.833333 NA Intergenic Intergenic -476912 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 218-24 chr2 148448717 148449256 + 0.833333 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -195765 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 183.667-34 chr22 24195401 24195839 + 0.833333 NA Intergenic AluSc|SINE|Alu 14133 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 215.333-34 chr3 161781208 161781499 + 0.833333 NA Intergenic Intergenic 284545 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 239.5-10 chr15 53666136 53666806 + 0.833333 NA intron (NM_182758, intron 13 of 19) intron (NM_182758, intron 13 of 19) 93192 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 192.167-2 chr1 66436502 66436758 + 0.833333 NA Intergenic Intergenic 82095 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 229.833-17 chr5 66973385 66973791 + 0.833333 NA intron (NM_001290226, intron 1 of 26) L1MC4|LINE|L1 14515 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 175.667-37 chr3 88188449 88188718 + 0.833333 NA Intergenic Intergenic 38624 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 257.667-5 chr14 39247908 39248536 + 0.833333 NA intron (NM_001329214, intron 4 of 28) intron (NM_001329214, intron 4 of 28) 14307 NM_001329214 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 211.333-23 chr2 148084288 148084693 + 0.833333 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -62886 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 283.167-2 chr1 223531450 223532132 + 0.833333 NA Intergenic L2a|LINE|L2 133910 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 226 chr1 40079126 40079578 + 0.833333 NA intron (NM_001363695, intron 6 of 7) L1PA17|LINE|L1 17900 NM_001142604 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 201.333-5 chr1 209879783 209880077 + 0.833333 NA Intergenic Intergenic 51958 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 168.833-23 chr8 17297612 17297892 + 0.833333 NA 3' UTR (NM_001363171, exon 12 of 12) 3' UTR (NM_001363171, exon 12 of 12) 50794 NM_152415 137492 Hs.343873 NM_152415 ENSG00000155975 VPS37A HCRP1|PQBP2|SPG53 VPS37A subunit of ESCRT-I protein-coding 308.333-15 chr3 59586919 59587398 + 0.833333 NA Intergenic L1M8|LINE|L1 71339 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 179.5-25 chr2 238018344 238018706 + 0.833333 NA intron (NM_080678, intron 5 of 9) intron (NM_080678, intron 5 of 9) -42476 NM_016510 51540 Hs.731909 NM_016510 ENSG00000132330 SCLY SCL|hSCL selenocysteine lyase protein-coding 248.667-24 chr3 165231781 165232307 + 0.833333 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 25084 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 171.833-8 chr15 87858750 87859113 + 0.833333 NA TTS (NM_002530) TTS (NM_002530) 87337 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 217.667-40 chr9 106144855 106145444 + 0.833333 NA Intergenic MIR|SINE|MIR 450608 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 229-4 chr16 10984013 10984482 + 0.833333 NA intron (NM_015226, intron 9 of 22) intron (NM_015226, intron 9 of 22) 39683 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 189.5-24 chr2 207048622 207048867 + 0.833333 NA Intergenic Intergenic 61329 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 251-32 chr7 50790576 50790997 + 0.833333 NA intron (NM_001001555, intron 1 of 16) intron (NM_001001555, intron 1 of 16) 2088 NM_001350816 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 193.333-53 chr9 29365995 29366323 + 0.833333 NA Intergenic L2c|LINE|L2 -152558 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 229.167-20 chr6 131062851 131063269 + 0.833333 NA intron (NM_001135554, intron 1 of 14) CpG 185 NM_001431 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 184-36 chr3 47282657 47282912 + 0.833333 NA promoter-TSS (NM_025010) promoter-TSS (NM_025010) 15 NM_022342 64147 Hs.373947 NM_022342 ENSG00000088727 KIF9 - kinesin family member 9 protein-coding 222.667-39 chr8 82310721 82311028 + 0.833333 NA Intergenic MamRep1151|LTR?|LTR? -468588 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 210.167-25 chr4 69638795 69639301 + 0.833333 NA exon (NM_001301233, exon 1 of 5) exon (NM_001301233, exon 1 of 5) 594 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 167-36 chr6 13407121 13407473 + 0.833333 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) 840 NM_001242630 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 167.167-32 chr7 53269660 53270030 + 0.833333 NA Intergenic Intergenic 234212 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 183.333-21 chr13 70702107 70702383 + 0.833333 NA Intergenic GA-rich|Low_complexity|Low_complexity -312896 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 198-5 chr1 214812381 214812645 + 0.833333 NA Intergenic Intergenic -193029 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 192.833-35 chr8 137691699 137691930 + 0.833333 NA Intergenic Intergenic -278226 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 321.167 chr1 246610720 246611200 + 0.833333 NA intron (NM_152609, intron 2 of 10) L1MB4|LINE|L1 44504 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 292.333-18 chr3 184362775 184363224 + 0.833333 NA promoter-TSS (NM_001278714) promoter-TSS (NM_001278714) 16 NM_001278715 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 176.333-2 chr10 52969467 52969762 + 0.833333 NA Intergenic LTR23|LTR|ERV1 -197914 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 248.167-15 chr22 23521775 23522260 + 0.833333 NA Intergenic CpG -16085 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 ncRNA 283.833-7 chr20 31461481 31461917 + 0.833333 NA Intergenic L1ME2|LINE|L1 11314 NM_001037500 245937 Hs.381373 NM_001037500 ENSG00000180383 DEFB124 DEFB-24 defensin beta 124 protein-coding 349.833-11 chr6 42512945 42513763 + 0.833333 NA Intergenic L2a|LINE|L2 -50668 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 196.5 chr1 113416682 113417120 + 0.833333 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 26386 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 175.167-11 chr12 123340616 123341237 + 0.833333 NA intron (NM_018183, intron 5 of 31) intron (NM_018183, intron 5 of 31) 23917 NR_107039 102466877 NR_107039 ENSG00000284425 MIR8072 hsa-mir-8072 microRNA 8072 ncRNA 337.5-4 chr12 62813144 62813808 + 0.833333 NA intron (NM_020700, intron 2 of 9) intron (NM_020700, intron 2 of 9) 121674 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 169-48 chr9 10310962 10311207 + 0.833333 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 301918 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 247-4 chr11 57778918 57779334 + 0.833333 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 17324 NM_001085459 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 207.833-5 chr12 18530521 18530933 + 0.833333 NA intron (NM_001288774, intron 24 of 32) MSTA|LTR|ERVL-MaLR 206782 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 319.333-5 chr12 14053059 14053618 + 0.833333 NA Intergenic Intergenic -72982 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 327-7 chr12 53599337 53599995 + 0.833333 NA intron (NR_073163, intron 2 of 12) intron (NR_073163, intron 2 of 12) 26324 NM_001366556 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 332.333-4 chr10 92320670 92321500 + 0.833333 NA intron (NM_017824, intron 2 of 5) Tigger3b|DNA|TcMar-Tigger 29918 NM_017824 54708 Hs.573490 NM_017824 ENSG00000198060 MARCH5 MARCH-V|MITOL|RNF153 membrane associated ring-CH-type finger 5 protein-coding 203.833-16 chr4 29025979 29026223 + 0.833333 NA Intergenic AluJo|SINE|Alu 29317 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 215.333-3 chr1 151992353 151992683 + 0.833333 NA intron (NM_002966, intron 1 of 2) intron (NM_002966, intron 1 of 2) 1341 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 227.167-10 chr17 66294086 66294391 + 0.833333 NA Intergenic AluSg7|SINE|Alu -8375 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 196.333-34 chr4 29098010 29098382 + 0.833333 NA Intergenic Intergenic 101412 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 189.167-8 chr11 91021179 91021475 + 0.833333 NA Intergenic Intergenic -152125 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 264.667-17 chr7 84997853 84998433 + 0.833333 NA 3' UTR (NM_152754, exon 17 of 17) 3' UTR (NM_152754, exon 17 of 17) 123788 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 169.667-22 chr12 77309262 77309655 + 0.833333 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -243889 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 398.333-13 chr5 103040828 103041788 + 0.833333 NA Intergenic Intergenic 78830 NM_001317954 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 226.5-9 chr11 844117 844614 + 0.833333 NA promoter-TSS (NM_001025237) promoter-TSS (NM_001025237) -81 NM_001025237 7106 Hs.654836 NM_003271 ENSG00000214063 TSPAN4 NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4 tetraspanin 4 protein-coding 248-3 chr1 178115310 178115865 + 0.833333 NA intron (NM_170692, intron 1 of 17) L2b|LINE|L2 21483 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 231-14 chr2 10658749 10659264 + 0.833333 NA intron (NR_048552, intron 9 of 19) intron (NR_048552, intron 9 of 19) 30969 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 188.833-29 chr3 188587651 188587994 + 0.833333 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) -19156 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 179-3 chr1 172875870 172876224 + 0.833333 NA Intergenic L1MA10|LINE|L1 174916 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 191.667-2 chr1 101139265 101139552 + 0.833333 NA Intergenic Intergenic 97120 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 260.5-20 chr5 172771939 172772490 + 0.833333 NA Intergenic CpG-22787 -1019 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 186.667-25 chr15 59605937 59606243 + 0.833333 NA Intergenic Intergenic -5693 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 237.333-2 chr10 15729919 15730323 + 0.833333 NA Intergenic AluSg7|SINE|Alu -9786 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 228.667-15 chr16 25689040 25689427 + 0.833333 NA Intergenic MIRb|SINE|MIR -2726 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 219.333-8 chr10 51920258 51920605 + 0.833333 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -220836 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 197-36 chr7 106737395 106737687 + 0.833333 NA Intergenic L1M5|LINE|L1 -76383 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 267.5-7 chr12 52454289 52454830 + 0.833333 NA Intergenic L1M7|LINE|L1 -2413 NM_005555 3854 Hs.708950 NM_005555 ENSG00000185479 KRT6B CK-6B|CK6B|K6B|KRTL1|PC2|PC4 keratin 6B protein-coding 211.5-16 chr14 46060880 46061354 + 0.833333 NA Intergenic Intergenic -3042 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 183.333-50 chr4 142430549 142430853 + 0.833333 NA intron (NM_001331040, intron 4 of 25) intron (NM_001331040, intron 4 of 25) 415834 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 199.833-4 chr10 62236722 62237137 + 0.833333 NA intron (NM_145307, intron 5 of 11) L1MA9|LINE|L1 31915 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 195.167-28 chr2 197453277 197453581 + 0.833333 NA promoter-TSS (NM_025147) promoter-TSS (NM_025147) 6 NM_001320818 80219 Hs.606592 NM_025147 ENSG00000115520 COQ10B - coenzyme Q10B protein-coding 223.667-31 chr2 149994139 149994623 + 0.833333 NA Intergenic Intergenic -135190 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 183.5-36 chr4 123218234 123218631 + 0.833333 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -178363 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 293-24 chr8 108371519 108372085 + 0.833333 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -71781 NM_001329494 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 220.833-16 chr2 189818173 189818603 + 0.833333 NA intron (NR_110332, intron 6 of 12) MLT1A0|LTR|ERVL-MaLR 33938 NR_110332 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 235.5-5 chr11 63216909 63217315 + 0.833333 NA intron (NM_199352, intron 4 of 8) MER53|DNA|hAT 12540 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 205.5-15 chr14 70788978 70789522 + 0.833333 NA intron (NM_033141, intron 2 of 12) intron (NM_033141, intron 2 of 12) -5798 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 218-8 chr11 113730951 113731390 + 0.833333 NA Intergenic Intergenic -24797 NR_110047 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 163.833-42 chr8 90350604 90350899 + 0.833333 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 129263 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 180.5-22 chr3 15006109 15006455 + 0.833333 NA intron (NM_003298, intron 3 of 14) intron (NM_003298, intron 3 of 14) -57841 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 229.167-15 chr3 114832677 114833158 + 0.833333 NA intron (NM_001348805, intron 4 of 10) intron (NM_001348805, intron 4 of 10) -40116 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 200-31 chr5 671542 671990 + 0.833333 NA intron (NM_007030, intron 2 of 3) intron (NM_007030, intron 2 of 3) 21586 NM_007030 11076 Hs.481466 NM_007030 ENSG00000171368 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 187.167-28 chr7 86915013 86915477 + 0.833333 NA intron (NM_001291991, intron 11 of 20) intron (NM_001291991, intron 11 of 20) 50654 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 196.5-8 chr11 131346038 131346397 + 0.833333 NA Intergenic Intergenic -24398 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 233.333-5 chr11 72873855 72874250 + 0.833333 NA intron (NM_014824, intron 12 of 19) MER57E1|LTR|ERV1 59641 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 222.833-7 chr12 117219948 117220434 + 0.833333 NA exon (NM_001204218, exon 28 of 30) exon (NM_001204218, exon 28 of 30) -29721 NM_015002 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 224.667-38 chr5 36050076 36050494 + 0.833333 NA intron (NM_001168316, intron 2 of 5) intron (NM_001168316, intron 2 of 5) 16597 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 279-19 chr2 205511064 205511492 + 0.833333 NA intron (NM_205863, intron 20 of 21) intron (NM_205863, intron 20 of 21) -171222 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 316.667-14 chr6 8556800 8557294 + 0.833333 NA intron (NR_038980, intron 2 of 4) intron (NR_038980, intron 2 of 4) -95162 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 167.5-11 chr12 14679799 14680113 + 0.833333 NA intron (NM_004963, intron 5 of 26) MIR3|SINE|MIR 16643 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 169.833-24 chr21 23926779 23927121 + 0.833333 NA Intergenic Intergenic 394427 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 202.5-49 chr7 46875461 46875839 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -178528 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 187.333-17 chr12 65811640 65812050 + 0.833333 NA intron (NR_026825, intron 1 of 1) L1MC1|LINE|L1 -12615 NM_001330190 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 196.167-40 chr9 127723841 127724268 + 0.833333 NA intron (NM_144965, intron 7 of 13) intron (NM_144965, intron 7 of 13) 7975 NM_144965 158248 Hs.642748 NM_144965 ENSG00000167094 TTC16 - tetratricopeptide repeat domain 16 protein-coding 224.667-42 chr7 78735426 78735763 + 0.833333 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -273394 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 170-37 chr3 99817666 99818054 + 0.833333 NA promoter-TSS (NM_032359) promoter-TSS (NM_032359) -2 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 181.834-3 chr1 175569301 175569934 + 0.833333 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 173978 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 266.833-25 chrX 72568499 72568837 + 0.833333 NA intron (NM_001166422, intron 3 of 4) intron (NM_001166422, intron 3 of 4) 4175 NM_001166422 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 185-38 chr4 113965584 113965847 + 0.833333 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 13932 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 229.167-21 chr7 25820439 25820955 + 0.833333 NA Intergenic Intergenic -30578 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 233.5-8 chr14 51019444 51019754 + 0.833333 NA intron (NM_015163, intron 3 of 9) intron (NM_015163, intron 3 of 9) -75116 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 208.667-44 chr7 26334134 26334476 + 0.833333 NA intron (NM_001318199, intron 1 of 6) intron (NM_001318199, intron 1 of 6) -26579 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 324.167-18 chr5 3310795 3311273 + 0.833333 NA Intergenic Intergenic 133199 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 166.833-31 chr8 51345563 51346007 + 0.833333 NA intron (NM_144651, intron 20 of 22) intron (NM_144651, intron 20 of 22) 463660 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 163.167-16 chr17 47698800 47699053 + 0.833333 NA intron (NM_014726, intron 4 of 8) intron (NM_014726, intron 4 of 8) 3662 NM_014726 9755 Hs.94790 NM_014726 ENSG00000198933 TBKBP1 ProSAPiP2|SINTBAD TBK1 binding protein 1 protein-coding 191.667-6 chr1 248906126 248906528 + 0.833333 NA promoter-TSS (NM_001017434) promoter-TSS (NM_001017434) 84 NM_001017434 267002 Hs.602037 NM_170725 ENSG00000185220 PGBD2 - piggyBac transposable element derived 2 protein-coding 259.833-3 chr10 84616066 84616575 + 0.833333 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 191151 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 212-42 chr7 27130484 27130865 + 0.833333 NA promoter-TSS (NM_002141) promoter-TSS (NM_002141) 83 NM_002141 3201 Hs.533357 NM_002141 ENSG00000197576 HOXA4 HOX1|HOX1D homeobox A4 protein-coding 467-5 chr18 77126214 77126969 + 0.833333 NA intron (NM_001025100, intron 1 of 3) L1MD2|LINE|L1 6192 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 321-3 chr11 76767542 76768302 + 0.833333 NA Intergenic Intergenic -14391 NM_001258210 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 206.833 chr1 75123187 75123628 + 0.833333 NA Intergenic Intergenic -5027 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 251.333-19 chr22 44698826 44699378 + 0.833333 NA intron (NM_001198721, intron 2 of 9) LTR85c|LTR|Gypsy? -3096 NM_181334 553158 Hs.102336 NM_181334 ENSG00000248405 PRR5-ARHGAP8 - PRR5-ARHGAP8 readthrough protein-coding 269.167-2 chr10 86399643 86400109 + 0.833333 NA Intergenic CpG -33081 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 183.667 chr1 53136538 53136815 + 0.833333 NA intron (NR_109858, intron 1 of 10) AluJo|SINE|Alu 5962 NM_001287597 6512 Hs.104637 NM_006671 ENSG00000162383 SLC1A7 AAAT|EAAT5 solute carrier family 1 member 7 protein-coding 186-31 chr3 98971180 98971526 + 0.833333 NA Intergenic Intergenic -69658 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 171.5-24 chr2 17156965 17157190 + 0.833333 NA Intergenic AluSc|SINE|Alu 361363 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 280.5-7 chr14 60573423 60573815 + 0.833333 NA Intergenic Intergenic 64473 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 197-37 chr7 119964877 119965372 + 0.833333 NA Intergenic GA-rich|Low_complexity|Low_complexity -57749 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 307.667-6 chr13 39777093 39777952 + 0.833333 NA intron (NM_001145079, intron 18 of 18) intron (NM_001145079, intron 18 of 18) -113387 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 217.667-22 chr17 69005200 69005477 + 0.833333 NA intron (NR_126414, intron 1 of 3) HAL1b|LINE|L1 624 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 252-19 chr13 97066884 97067498 + 0.833333 NA Intergenic Intergenic -72461 NM_001346197 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 212.167-11 chr3 169097294 169097806 + 0.833333 NA intron (NM_001163999, intron 10 of 14) MIRc|SINE|MIR 47973 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 182.167-10 chr17 12667332 12667619 + 0.833333 NA intron (NM_001146312, intron 1 of 13) intron (NM_001146312, intron 1 of 13) 1585 NM_153604 93649 Hs.462257 NM_153604 ENSG00000141052 MYOCD MYCD myocardin protein-coding 164.5-10 chr11 64496015 64496257 + 0.833333 NA Intergenic Intergenic 47079 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LINC02724 - long intergenic non-protein coding RNA 2724 ncRNA 273.833 chr1 6061150 6061678 + 0.833333 NA intron (NM_001199862, intron 2 of 15) intron (NM_001199862, intron 2 of 15) 15526 NM_001199862 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 207.833-10 chr18 61467600 61468026 + 0.833333 NA intron (NM_031891, intron 1 of 11) MIRb|SINE|MIR 134383 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 182.167-17 chr3 17415808 17416185 + 0.833333 NA intron (NM_001349091, intron 2 of 19) intron (NM_001349091, intron 2 of 19) 284024 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 185.833-31 chrX 146316727 146317157 + 0.833333 NA Intergenic L1M4|LINE|L1 -289070 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 263.333-3 chr11 18005219 18005830 + 0.833333 NA intron (NR_104040, intron 3 of 11) intron (NR_104040, intron 3 of 11) 7523 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 208.5-5 chr11 32383727 32384093 + 0.833333 NA Intergenic Intergenic 16490 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 214.667-8 chr12 46887894 46888283 + 0.833333 NA Intergenic L1MD2|LINE|L1 -62091 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 183.167-41 chr8 123755987 123756483 + 0.833333 NA Intergenic L1MA6|LINE|L1 -12204 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 238.5-15 chr2 76254047 76254396 + 0.833333 NA Intergenic L1MEd|LINE|L1 -543306 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 177.167-19 chr5 74128120 74128339 + 0.833333 NA Intergenic UCON49|LINE|L2 180096 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 177.5 chr1 53260007 53260356 + 0.833333 NA intron (NM_004631, intron 13 of 18) MIRb|SINE|MIR 21571 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 211.5-9 chr10 121117740 121118139 + 0.833333 NA Intergenic MER2|DNA|TcMar-Tigger 266577 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 228.5-10 chr17 40469724 40470161 + 0.833333 NA Intergenic Intergenic 26492 NM_001552 3487 Hs.462998 NM_001552 ENSG00000141753 IGFBP4 BP-4|HT29-IGFBP|IBP4|IGFBP-4 insulin like growth factor binding protein 4 protein-coding 206.333-14 chr15 75732725 75733050 + 0.833333 NA intron (NR_024595, intron 3 of 4) intron (NR_024595, intron 3 of 4) 7190 NR_024595 100128285 Hs.604066 NR_024595 DNM1P35 DNM1DN8-2|DNM1DN8.2|DNM1DN8@|FKSG88 dynamin 1 pseudogene 35 pseudo 378.5-5 chr14 87991957 87992838 + 0.833333 NA intron (NM_001201402, intron 1 of 16) intron (NM_001201402, intron 1 of 16) 785 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 237.5-6 chr10 118727669 118727997 + 0.833333 NA intron (NM_153810, intron 3 of 8) intron (NM_153810, intron 3 of 8) 27137 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 266.5 chr1 15501401 15501813 + 0.833333 NA intron (NM_001278054, intron 2 of 4) intron (NM_001278054, intron 2 of 4) 22608 NM_001229 842 Hs.329502 NM_001229 ENSG00000132906 CASP9 APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56 caspase 9 protein-coding 170.167-18 chr16 62204291 62204724 + 0.833333 NA Intergenic Intergenic -168069 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 194.5-12 chr11 60169003 60169332 + 0.833333 NA Intergenic HERVL18-int|LTR|ERVL 14164 NM_152851 64231 Hs.523702 NM_022349 ENSG00000110077 MS4A6A 4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090 membrane spanning 4-domains A6A protein-coding 188.333-27 chr22 26726375 26726687 + 0.833333 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 53688 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 466.5-6 chr7 83933755 83934741 + 0.833333 NA Intergenic L2a|LINE|L2 260541 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 242.333-13 chr2 79854575 79855108 + 0.833333 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 11742 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 241.333-33 chr6 56233865 56234179 + 0.833333 NA intron (NM_001318751, intron 1 of 30) L1MEd|LINE|L1 13558 NR_134851 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 188.167-15 chr18 7588728 7589080 + 0.833333 NA intron (NM_002845, intron 1 of 30) AluJb|SINE|Alu 21588 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 196.5-37 chr7 1536802 1537304 + 0.833333 NA intron (NM_002360, intron 1 of 2) intron (NM_002360, intron 1 of 2) -2173 NR_149036 100128653 Hs.656985 NR_149036 LOC100128653 - uncharacterized LOC100128653 ncRNA 233-29 chr6 142418168 142418570 + 0.833333 NA intron (NM_198569, intron 21 of 24) intron (NM_198569, intron 21 of 24) 116362 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 180-11 chr11 62449150 62449777 + 0.833333 NA intron (NM_024060, intron 5 of 5) intron (NM_024060, intron 5 of 5) 30430 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 169.167-11 chr16 13524852 13525216 + 0.833333 NA Intergenic Intergenic -395123 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 175.167 chr1 94069163 94069390 + 0.833333 NA intron (NM_000350, intron 11 of 49) intron (NM_000350, intron 11 of 49) 51872 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 331-19 chr5 75052515 75053205 + 0.833333 NA promoter-TSS (NM_001366737) promoter-TSS (NM_001366737) -302 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 177.333-34 chr7 27691700 27692167 + 0.833333 NA Intergenic AluY|SINE|Alu -29050 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 203.667-2 chr1 46991197 46991485 + 0.833333 NA intron (NM_001320289, intron 1 of 11) intron (NM_001320289, intron 1 of 11) -12845 NM_001320290 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 167.167-22 chr3 63198901 63199166 + 0.833333 NA Intergenic Intergenic -79275 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 178.333-43 chr9 103212201 103212508 + 0.833333 NA intron (NR_121578, intron 7 of 9) ERVL-E-int|LTR|ERVL 112679 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 280.167-12 chr3 152824325 152824827 + 0.833333 NA Intergenic Intergenic -10555 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 175.167-3 chr1 153301196 153301461 + 0.833333 NA intron (NM_052891, intron 5 of 6) intron (NM_052891, intron 5 of 6) 9390 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 305-3 chr1 235030616 235031125 + 0.833333 NA Intergenic AluSp|SINE|Alu 38948 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 227.833-6 chr12 17419237 17419560 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL 169680 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 238.5-12 chr17 61561829 61562319 + 0.833333 NA Intergenic Intergenic 29145 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 165.167-37 chr5 128860642 128860922 + 0.833333 NA Intergenic Intergenic -104345 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 297.167-8 chr3 12137576 12138284 + 0.833333 NA intron (NM_133625, intron 1 of 12) intron (NM_133625, intron 1 of 12) 20982 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 164.167-21 chr18 3539217 3539523 + 0.833333 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -54744 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 272.167-21 chr6 153386007 153386559 + 0.833333 NA Intergenic Intergenic -255001 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 248.167-8 chr15 50623561 50624084 + 0.833333 NA intron (NR_149154, intron 12 of 37) intron (NR_149154, intron 12 of 37) 62975 NR_149154 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 166.833-17 chr20 51266807 51267067 + 0.833333 NA Intergenic Tigger12|DNA|TcMar-Tigger 186040 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 173.667-50 chr8 128234851 128235167 + 0.833333 NA Intergenic MIR|SINE|MIR 84893 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 172.333-44 chr5 26120842 26121048 + 0.833333 NA Intergenic Intergenic 917641 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 221.667-39 chr5 149361279 149361580 + 0.833333 NA intron (NM_001301057, intron 1 of 5) L3|LINE|CR1 3383 NM_001301057 78991 Hs.644397 NM_024028 ENSG00000145882 PCYOX1L - prenylcysteine oxidase 1 like protein-coding 170.333-42 chr3 189041282 189041901 + 0.833333 NA Intergenic Intergenic -93952 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 304.833-12 chrX 86946750 86947389 + 0.833333 NA Intergenic Intergenic -570733 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 165.5-38 chr6 71134851 71135213 + 0.833333 NA Intergenic L1M1|LINE|L1 -153779 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 203.333-28 chr19 42189707 42190227 + 0.833333 NA Intergenic AluJo|SINE|Alu 27710 NR_073046 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 298.667-21 chr8 74822180 74822692 + 0.833333 NA Intergenic Intergenic -2098 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 211.667 chr1 89601279 89601577 + 0.833333 NA Intergenic MIRb|SINE|MIR 31466 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 LRRC8C-DT - LRRC8C divergent transcript ncRNA 180.833-5 chr12 77661068 77661438 + 0.833333 NA Intergenic L1ME1|LINE|L1 -169641 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 185.833-21 chr5 4636024 4636406 + 0.833333 NA Intergenic Intergenic -137266 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 301.167-4 chr12 45883442 45883838 + 0.833333 NA intron (NM_152641, intron 16 of 20) intron (NM_152641, intron 16 of 20) 106934 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 287.833 chr1 178593044 178593461 + 0.833333 NA Intergenic MIRb|SINE|MIR 50456 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 250.833-13 chr6 131623357 131623845 + 0.833333 NA intron (NM_015979, intron 4 of 30) THE1C|LTR|ERVL-MaLR 4641 NM_015979 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 169.5 chr1 77573781 77574233 + 0.833333 NA intron (NM_015534, intron 12 of 14) L1MC5|LINE|L1 108651 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 179.167-11 chr17 72332761 72332990 + 0.833333 NA Intergenic AluJr|SINE|Alu -9936 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 183.667-53 chr7 110502860 110503217 + 0.833333 NA Intergenic L1MB3|LINE|L1 -542825 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 164.667 chr1 18681214 18681680 + 0.833333 NA intron (NM_001135254, intron 4 of 8) intron (NM_001135254, intron 4 of 8) 50601 NM_002584 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 237.5-20 chr19 51389371 51389787 + 0.833333 NA intron (NM_001193623, intron 1 of 1) intron (NM_001193623, intron 1 of 1) 1012 NR_126530 147646 Hs.148344 NM_001193623 ENSG00000262874 C19orf84 - chromosome 19 open reading frame 84 protein-coding 267.333-28 chr8 139705431 139705903 + 0.833333 NA Intergenic CpG-27595 -2544 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 305.833-13 chr3 159324941 159325474 + 0.833333 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 42561 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 318.5-16 chr8 88143324 88143921 + 0.833333 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 183861 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 224-46 chr8 100120836 100121295 + 0.833333 NA Intergenic AluSz|SINE|Alu -15016 NM_001286692 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 208.667-41 chr6 141565237 141565579 + 0.833333 NA Intergenic Intergenic 523391 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 225.333-23 chr2 70579618 70580115 + 0.833333 NA Intergenic Intergenic -26040 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 182-37 chr5 80021777 80022082 + 0.833333 NA intron (NM_001306213, intron 2 of 22) L1MEd|LINE|L1 -13419 NM_003248 7060 Hs.211426 NM_003248 ENSG00000113296 THBS4 TSP-4|TSP4 thrombospondin 4 protein-coding 200.333-8 chr1 233359782 233360217 + 0.833333 NA intron (NM_032435, intron 4 of 9) intron (NM_032435, intron 4 of 9) 32275 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 244.667-10 chr12 118364211 118364794 + 0.833333 NA intron (NM_001346490, intron 1 of 21) MIRc|SINE|MIR -4797 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 227.167-9 chr15 70793024 70793410 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -29659 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 409.167-5 chr8 133201837 133202487 + 0.833333 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 11123 NM_003882 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 242.667-28 chr9 34501994 34502361 + 0.833333 NA intron (NM_001281428, intron 12 of 19) intron (NM_001281428, intron 12 of 19) 20813 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 242.167-4 chr11 62771283 62771654 + 0.833333 NA promoter-TSS (NM_006473) promoter-TSS (NM_006473) 72 NM_006473 10629 Hs.714400 NM_006473 ENSG00000162227 TAF6L PAF65A TATA-box binding protein associated factor 6 like protein-coding 199.833-27 chr5 177417725 177418234 + 0.833333 NA Intergenic FLAM_A|SINE|Alu -8403 NM_000505 2161 Hs.1321 NM_000505 ENSG00000131187 F12 HAE3|HAEX|HAF coagulation factor XII protein-coding 188-55 chr8 87152312 87152633 + 0.833333 NA intron (NM_173538, intron 4 of 10) MER30|DNA|hAT-Charlie 286057 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 206.167-16 chr3 186210318 186210593 + 0.833333 NA intron (NM_001346, intron 21 of 24) intron (NM_001346, intron 21 of 24) -101366 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 163.5-12 chr12 129571092 129571396 + 0.833333 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 332781 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 168.5-17 chr14 86796050 86796334 + 0.833333 NA Intergenic Intergenic -109586 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 274.833-14 chr8 29168496 29169182 + 0.833333 NA intron (NM_015254, intron 10 of 39) MLT1F2|LTR|ERVL-MaLR 94231 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 265-28 chr8 114034264 114034775 + 0.833333 NA Intergenic Intergenic -597580 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 263.667-5 chr10 118751527 118751969 + 0.833333 NA intron (NM_153810, intron 1 of 8) L1M5|LINE|L1 3222 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 195.833-2 chr1 116228948 116229290 + 0.833333 NA Intergenic Intergenic 117364 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 217-22 chr22 30526232 30526761 + 0.833333 NA intron (NM_001193336, intron 8 of 11) intron (NM_001193336, intron 8 of 11) 16158 NM_001353441 730005 Hs.505605 NM_001193336 ENSG00000214491 SEC14L6 - SEC14 like lipid binding 6 protein-coding 163.333-8 chr11 10592520 10592791 + 0.833333 NA intron (NM_001100163, intron 17 of 20) intron (NM_001100163, intron 17 of 20) -23990 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 200.333-43 chr7 103737806 103738063 + 0.833333 NA intron (NM_005045, intron 6 of 64) intron (NM_005045, intron 6 of 64) 251582 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 232-22 chr2 62061974 62062556 + 0.833333 NA intron (NM_001321781, intron 2 of 2) AluSq|SINE|Alu -133850 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 173.5-18 chr14 35229329 35229755 + 0.833333 NA intron (NM_014672, intron 5 of 7) L1PA16|LINE|L1 -49016 NM_001282234 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 357.833-4 chr15 43543619 43544099 + 0.833333 NA intron (NM_001130858, intron 29 of 30) L1MC5a|LINE|L1 26251 NM_002373 4130 Hs.194301 NM_002373 ENSG00000166963 MAP1A MAP1L|MTAP1A microtubule associated protein 1A protein-coding 194.667-48 chr5 133944496 133944946 + 0.833333 NA Intergenic Intergenic 23904 NM_020199 56951 Hs.744034 NM_020199 ENSG00000113583 C5orf15 HTGN29|KCT2 chromosome 5 open reading frame 15 protein-coding 193-25 chr3 74363121 74363545 + 0.833333 NA intron (NM_020872, intron 9 of 21) MER20|DNA|hAT-Charlie 157807 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 174.167-15 chr17 63943857 63944107 + 0.833333 NA intron (NM_000334, intron 21 of 23) intron (NM_000334, intron 21 of 23) -11651 NM_001329050 974 Hs.89575 NM_000626 ENSG00000007312 CD79B AGM6|B29|IGB CD79b molecule protein-coding 167.167-17 chr15 90954998 90955280 + 0.833333 NA intron (NM_001017919, intron 1 of 7) CpG 263 NM_033544 91433 Hs.655895 NM_033544 ENSG00000166965 RCCD1 - RCC1 domain containing 1 protein-coding 302.333-4 chr13 50953367 50953956 + 0.833333 NA intron (NM_001142279, intron 9 of 9) intron (NM_001142279, intron 9 of 9) -42949 NR_046552 100874255 Hs.741501 NR_046552 RNASEH2B-AS1 - RNASEH2B antisense RNA 1 ncRNA 177.167-34 chr9 75220101 75220568 + 0.833333 NA Intergenic FordPrefect|DNA|hAT-Tip100 131820 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 193.5 chr1 18234195 18234545 + 0.833333 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 126572 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 188.167-6 chr1 111783931 111784439 + 0.833333 NA intron (NM_172198, intron 3 of 6) L1MD2|LINE|L1 28284 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 191.5-50 chr8 114846368 114846720 + 0.833333 NA Intergenic LTR16C|LTR|ERVL 821469 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 233.667-21 chr20 46772105 46772536 + 0.833333 NA Intergenic AluSx|SINE|Alu 62671 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 182.5-39 chr8 81234279 81234593 + 0.833333 NA Intergenic Intergenic -46100 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 235.167-14 chr17 53147097 53147468 + 0.833333 NA Intergenic MER2B|DNA|TcMar-Tigger 161777 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 205.5-8 chr11 87849720 87850187 + 0.833333 NA Intergenic Intergenic -130542 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 228-14 chr14 55324734 55325164 + 0.833333 NA intron (NM_152231, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR 52795 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 308.833-2 chr1 161991800 161992509 + 0.833333 NA intron (NM_001347700, intron 6 of 7) Tigger1|DNA|TcMar-Tigger 32311 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 189.667 chr1 118006304 118006721 + 0.833333 NA intron (NM_206996, intron 31 of 48) L1MB7|LINE|L1 76773 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 221-37 chr8 131292939 131293374 + 0.833333 NA Intergenic L1MB4|LINE|L1 -252247 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 251.833-7 chr2 65436793 65437120 + 0.833333 NA Intergenic Intergenic -4357 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 199-7 chr10 25530908 25531397 + 0.833333 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -120560 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 191.333-7 chr11 45341536 45341901 + 0.833333 NA Intergenic MIR|SINE|MIR -13653 NR_120558 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 323-18 chr3 18844110 18844835 + 0.833333 NA Intergenic Intergenic -304038 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 199.5-35 chr4 64987644 64987978 + 0.833333 NA intron (NR_033976, intron 1 of 6) intron (NR_033976, intron 1 of 6) 16689 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 193.333-26 chr18 74197076 74197314 + 0.833333 NA Intergenic Intergenic 48672 NM_014177 29090 Hs.532835 NM_014177 ENSG00000075336 TIMM21 C18orf55|HSPC154|TIM21 translocase of inner mitochondrial membrane 21 protein-coding 185.833-27 chr6 137978208 137978589 + 0.833333 NA Intergenic Intergenic -32598 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 245.5-6 chr10 50981332 50981664 + 0.833333 NA Intergenic Intergenic -9390 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 177.333 chr1 39577005 39577232 + 0.833333 NA promoter-TSS (NM_001135653) promoter-TSS (NM_001135653) -328 NM_001135653 8761 Hs.169900 NM_003819 ENSG00000090621 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein cytoplasmic 4 protein-coding 183.667-44 chr5 31991779 31992089 + 0.833333 NA intron (NM_178140, intron 3 of 24) AluSx|SINE|Alu -55775 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 210.833-15 chr19 36939218 36939713 + 0.833333 NA intron (NM_001204839, intron 5 of 8) L1M7|LINE|L1 23133 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 220-7 chr12 32339478 32339813 + 0.833333 NA 3' UTR (NM_001363603, exon 8 of 8) 3' UTR (NM_001363603, exon 8 of 8) -59913 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 179.167-30 chr9 74962283 74962655 + 0.833333 NA intron (NR_121183, intron 1 of 4) AluSq2|SINE|Alu 9504 NR_121183 101927380 Hs.257556 NR_121183 CARNMT1-AS1 C9orf41-AS1 CARNMT1 antisense RNA 1 ncRNA 300-4 chr10 62243393 62244090 + 0.833333 NA intron (NM_001282941, intron 3 of 4) L1M6|LINE|L1 25103 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 229.667-18 chr2 209225911 209226232 + 0.833333 NA Intergenic AluJo|SINE|Alu -197976 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 220.833-20 chr5 65567963 65568422 + 0.833333 NA intron (NM_001278926, intron 3 of 11) Tigger4a|DNA|TcMar-Tigger 4896 NM_015342 23398 Hs.121432 NM_015342 ENSG00000113593 PPWD1 - peptidylprolyl isomerase domain and WD repeat containing 1 protein-coding 374.167-5 chr2 129275715 129276387 + 0.833333 NA Intergenic Intergenic -2160 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 245-13 chr19 7868912 7869290 + 0.833333 NA exon (NM_001190467, exon 6 of 6) exon (NM_001190467, exon 6 of 6) 5289 NM_001190467 80164 Hs.288540 NM_001080403 ENSG00000183248 PRR36 - proline rich 36 protein-coding 301.5-18 chr7 20174552 20174959 + 0.833333 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 32839 NR_046756 100874041 Hs.145104 NR_046756 ENSG00000228598 MACC1-AS1 - MACC1 antisense RNA 1 ncRNA 202.167-16 chr16 1611651 1612040 + 0.833333 NA intron (NM_014714, intron 1 of 30) CpG 227 NM_014714 9742 Hs.389438 NM_014714 ENSG00000187535 IFT140 MZSDS|RP80|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114 intraflagellar transport 140 protein-coding 177.667-26 chr20 63743761 63744070 + 0.833333 NA 3' UTR (NM_020062, exon 8 of 8) 3' UTR (NM_020062, exon 8 of 8) 4139 NM_020062 56731 Hs.435126 NM_020062 ENSG00000125520 SLC2A4RG GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19 SLC2A4 regulator protein-coding 359.5-13 chrX 55057406 55058089 + 0.833333 NA Intergenic Intergenic -17283 NM_001015038 389860 Hs.293317 NM_001015038 ENSG00000238269 PAGE2B CT16.5|GAGEE3|PAGE-2B PAGE family member 2B protein-coding 197.5-8 chr12 103936120 103936775 + 0.833333 NA intron (NM_003299, intron 5 of 17) AluJb|SINE|Alu 6022 NR_037425 100500842 NR_037425 ENSG00000284503 MIR3652 - microRNA 3652 ncRNA 173.5-44 chr4 115453687 115453983 + 0.833333 NA Intergenic Intergenic -340215 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 410-5 chr15 64524824 64525762 + 0.833333 NA intron (NM_015042, intron 1 of 8) L1MB7|LINE|L1 25873 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 176.833-14 chr12 105730761 105731073 + 0.833333 NA intron (NR_110109, intron 3 of 4) L2b|LINE|L2 24143 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 207.5-7 chr10 77242452 77242877 + 0.833333 NA intron (NM_001322838, intron 3 of 29) intron (NM_001322838, intron 3 of 29) 101833 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 278-2 chr1 10725849 10726404 + 0.833333 NA intron (NM_001079843, intron 2 of 20) (ACT)n|Simple_repeat|Simple_repeat 70520 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 290.167-10 chr3 111865333 111865956 + 0.833333 NA intron (NM_001134439, intron 1 of 17) MIR1_Amn|SINE|MIR 5817 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 176.833-15 chr12 116169662 116170054 + 0.833333 NA intron (NM_015335, intron 2 of 30) AluJr|SINE|Alu -21204 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 163.833-28 chr3 77271109 77271467 + 0.833333 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 173276 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 169.5-9 chr10 103908204 103908509 + 0.833333 NA intron (NM_024928, intron 3 of 9) intron (NM_024928, intron 3 of 9) 9828 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1 subunit of CST complex protein-coding 225-7 chr14 71863537 71863949 + 0.833333 NA Intergenic Charlie21a|DNA|hAT-Charlie -68428 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 205.333-30 chr22 41848621 41848929 + 0.833333 NA intron (NR_103834, intron 1 of 21) MIR3|SINE|MIR -14110 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 219-39 chr9 82981256 82981919 + 0.833333 NA 3' UTR (NM_152573, exon 17 of 17) 3' UTR (NM_152573, exon 17 of 17) 81555 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 163.167-24 chr2 34687359 34687673 + 0.833333 NA intron (NR_126404, intron 1 of 2) MER58C|DNA|hAT-Charlie 9959 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 173.167-20 chr2 115840049 115840513 + 0.833333 NA intron (NM_001321912, intron 25 of 25) intron (NM_001321912, intron 25 of 25) 496466 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 180.667-23 chr17 10628612 10628988 + 0.833333 NA intron (NM_002470, intron 40 of 40) intron (NM_002470, intron 40 of 40) 28509 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 173.5-39 chr3 7976887 7977124 + 0.833333 NA intron (NR_110131, intron 2 of 3) LTR1A1|LTR|ERV1 39302 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 212.333-17 chr3 18443515 18443808 + 0.833333 NA intron (NM_001322874, intron 1 of 10) CpG 457 NM_001322875 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 212-39 chr5 117384698 117385125 + 0.833333 NA Intergenic Intergenic -30601 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 192.833-11 chr15 99251014 99251371 + 0.833333 NA promoter-TSS (NM_144598) promoter-TSS (NM_144598) 33 NM_001288616 64927 Hs.513195 NM_022905 ENSG00000103852 TTC23 HCC-8 tetratricopeptide repeat domain 23 protein-coding 249.833-4 chr14 68139290 68139738 + 0.833333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 315922 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 205.667-39 chr7 106449825 106450145 + 0.833333 NA Intergenic Intergenic -165002 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 186.833-11 chr2 41535302 41535678 + 0.833333 NA Intergenic LOR1a|LTR|ERV1 -342065 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 241.5-5 chr12 7916197 7916551 + 0.833333 NA Intergenic Intergenic 19813 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 229.5-4 chr10 69409232 69409804 + 0.833333 NA intron (NM_001057, intron 2 of 4) MER44A|DNA|TcMar-Tigger 7400 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 226.833-17 chr6 80002981 80003449 + 0.833333 NA Intergenic L2a|LINE|L2 -1390 NM_001166691 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 248.333-36 chrX 75028044 75028559 + 0.833333 NA Intergenic L1MA2|LINE|L1 -102849 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 196.333-43 chr6 158914299 158914740 + 0.833333 NA Intergenic AluSx|SINE|Alu 26042 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 180.5-7 chr10 34567859 34568132 + 0.833333 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 247301 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 223.833 chr1 48694112 48694588 + 0.833333 NA intron (NR_136623, intron 5 of 12) MIRb|SINE|MIR 82541 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 230.167-14 chr5 58456391 58456781 + 0.833333 NA exon (NM_001252226, exon 10 of 15) exon (NM_001252226, exon 10 of 15) 3500 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 213.833-15 chr4 45521218 45521645 + 0.833333 NA Intergenic Intergenic 602623 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 189.5-12 chr14 76023550 76023934 + 0.833333 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 37979 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 166.833-3 chr1 246808247 246808568 + 0.833333 NA Intergenic MIRc|SINE|MIR 18790 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 211.5-10 chr10 124436024 124436409 + 0.833333 NA Intergenic L1MB5|LINE|L1 13819 NM_001146340 390010 Hs.290255 NM_001146340 ENSG00000229544 NKX1-2 C10orf121|NKX-1.1|bB238F13.2 NK1 homeobox 2 protein-coding 264.5-2 chr10 102641428 102641780 + 0.833333 NA Intergenic L2b|LINE|L2 -2891 NR_144321 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 189.667-11 chr11 78342888 78343220 + 0.833333 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) -1174 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 199.5-18 chr16 55513709 55514038 + 0.833333 NA intron (NM_017839, intron 1 of 13) L1M4|LINE|L1 4801 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 292.667-4 chr16 21560643 21561030 + 0.833333 NA Intergenic AluJo|SINE|Alu -36385 NM_001288660 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 175-45 chr5 8614147 8614675 + 0.833333 NA Intergenic L2c|LINE|L2 153486 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 177.667-43 chr8 96165974 96166346 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -5354 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 232.167-12 chr3 19024835 19025289 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -123448 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 164.667-23 chr18 32260845 32261173 + 0.833333 NA Intergenic Intergenic 70970 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 180.667-29 chr21 34308066 34308454 + 0.833333 NA Intergenic MER5A1|DNA|hAT-Charlie -55764 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 173.5-26 chr15 93041486 93041726 + 0.833333 NA 3' UTR (NM_001166288, exon 4 of 4) 3' UTR (NM_001166288, exon 4 of 4) 31550 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 289.667-7 chr12 46072057 46072692 + 0.833333 NA Intergenic Intergenic -81800 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 205.667-26 chr22 20853080 20853483 + 0.833333 NA intron (NM_058004, intron 1 of 54) intron (NM_058004, intron 1 of 54) 5530 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 326.833-9 chr17 52250667 52251153 + 0.833333 NA Intergenic L2c|LINE|L2 -90893 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 338.333-11 chr8 99508043 99508693 + 0.833333 NA intron (NM_017890, intron 28 of 61) intron (NM_017890, intron 28 of 61) 28362 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 177.5-2 chr1 178714339 178714743 + 0.833333 NA Intergenic Intergenic -10606 NM_001286247 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 191.667-36 chr3 123602132 123602539 + 0.833333 NA intron (NR_121654, intron 2 of 3) LTR57|LTR|ERVL 16822 NR_038266 100506826 Hs.556600 NR_038266 ENSG00000239523 MYLK-AS1 - MYLK antisense RNA 1 ncRNA 290.833-9 chr6 99330043 99330573 + 0.833333 NA intron (NM_001346533, intron 3 of 5) intron (NM_001346533, intron 3 of 5) 19366 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 324.167-12 chr22 50340700 50341273 + 0.833333 NA Intergenic AluSx1|SINE|Alu -2341 NM_001351647 9701 Hs.449098 NM_014678 ENSG00000100239 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6 regulatory subunit 2 protein-coding 223.5-10 chr14 21066167 21066607 + 0.833333 NA intron (NM_001282211, intron 1 of 14) AluSc|SINE|Alu -3917 NM_018071 55701 Hs.35125 NM_018071 ENSG00000165801 ARHGEF40 SOLO Rho guanine nucleotide exchange factor 40 protein-coding 190.167-9 chr19 46064022 46064583 + 0.833333 NA intron (NR_163177, intron 1 of 5) L1MA2|LINE|L1 13327 NR_163175 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 168.333-34 chr2 82422097 82422318 + 0.833333 NA Intergenic Intergenic -434596 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 170-15 chr12 107936431 107936682 + 0.833333 NA Intergenic Intergenic -32785 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 265.833-5 chr11 123741299 123741662 + 0.833333 NA intron (NM_001301779, intron 1 of 7) CpG 180 NM_003455 7753 Hs.112556 NM_003455 ENSG00000166261 ZNF202 ZKSCAN10|ZSCAN42 zinc finger protein 202 protein-coding 245.167-7 chr19 35248974 35249336 + 0.833333 NA intron (NM_205834, intron 1 of 9) CpG 499 NM_015925 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 250-14 chr2 134915284 134915800 + 0.833333 NA intron (NR_036549, intron 1 of 4) L1MC|LINE|L1 3064 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 207.5-4 chr1 116492763 116493128 + 0.833333 NA Intergenic Intergenic -14119 NR_125972 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 175.833-38 chr6 112115457 112115834 + 0.833333 NA intron (NM_001105206, intron 36 of 38) intron (NM_001105206, intron 36 of 38) 28054 NM_001033564 619208 Hs.591340 NM_001033564 ENSG00000203778 FAM229B C6orf225 family with sequence similarity 229 member B protein-coding 182.833-29 chr5 91246027 91246401 + 0.833333 NA Intergenic Intergenic 68188 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 260.167-7 chr12 1705033 1705553 + 0.833333 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 14223 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 187.833-17 chr3 180048864 180049116 + 0.833333 NA Intergenic Intergenic -12053 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 338.667-13 chr7 91090277 91090951 + 0.833333 NA intron (NM_012395, intron 11 of 13) intron (NM_012395, intron 11 of 13) -173819 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 228.5-15 chr2 149811301 149811680 + 0.833333 NA intron (NR_145421, intron 2 of 4) AluSg7|SINE|Alu 47701 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 209.667-26 chr3 84165046 84165474 + 0.833333 NA Intergenic L1MB3|LINE|L1 704315 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 287.833-12 chr2 238462162 238462610 + 0.833333 NA Intergenic L1MB7|LINE|L1 35459 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 231.667-34 chr8 108051356 108051691 + 0.833333 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 30416 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 247.5-47 chr8 106603972 106604284 + 0.833333 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -53680 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 168-50 chr8 74958746 74959058 + 0.833333 NA Intergenic Intergenic -25603 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 222.167-5 chr10 112708222 112708764 + 0.833333 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 74323 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 246.167-8 chr14 58639552 58640104 + 0.833333 NA intron (NR_046095, intron 1 of 3) intron (NR_046095, intron 1 of 3) 991 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 167-30 chr4 93920548 93921045 + 0.833333 NA Intergenic Intergenic 92043 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 205.833-12 chr15 73927722 73928036 + 0.833333 NA promoter-TSS (NR_040070) promoter-TSS (NR_040070) 81 NR_040070 100287616 Hs.599785 NR_040066 ENSG00000261801 LOXL1-AS1 - LOXL1 antisense RNA 1 ncRNA 189.5-37 chr7 24404840 24405114 + 0.833333 NA Intergenic Intergenic 120787 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 231.833-8 chr2 17745539 17745965 + 0.833333 NA intron (NM_024624, intron 2 of 26) intron (NM_024624, intron 2 of 26) 8058 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 227.333-16 chr17 28228574 28229050 + 0.833333 NA TTS (NR_003064) TTS (NR_003064) 2249 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 184.5-38 chr4 31934764 31935061 + 0.833333 NA Intergenic Intergenic -62467 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 203-28 chr5 39704277 39704527 + 0.833333 NA Intergenic Intergenic 183971 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 167.667-21 chr20 16531170 16531433 + 0.833333 NA intron (NM_001199866, intron 1 of 22) L1MC5|LINE|L1 42147 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 208.5-43 chr7 141340780 141341196 + 0.833333 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -210422 NM_001364948 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 226.833-3 chr1 192522245 192522597 + 0.833333 NA Intergenic Intergenic -53352 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 232.333-20 chr6 92280032 92280519 + 0.833333 NA Intergenic Intergenic -589847 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 206.833-9 chr20 40823636 40824055 + 0.833333 NA Intergenic LTR16B2|LTR|ERVL -109222 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 200.833-7 chr1 235792291 235792788 + 0.833333 NA intron (NM_000081, intron 11 of 52) AluSx1|SINE|Alu 60521 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 178.5-28 chr3 62217234 62217696 + 0.833333 NA intron (NM_002841, intron 12 of 29) intron (NM_002841, intron 12 of 29) 101482 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 174.333-17 chr2 11498182 11498395 + 0.833333 NA Intergenic L1MD1|LINE|L1 -32111 NM_001278278 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 283.167-7 chr14 95441991 95442421 + 0.833333 NA intron (NM_001363692, intron 10 of 16) intron (NM_001363692, intron 10 of 16) 33629 NM_152592 161176 Hs.41502 NM_024633 ENSG00000176438 SYNE3 C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3 spectrin repeat containing nuclear envelope family member 3 protein-coding 217.167-28 chr7 41732711 41733193 + 0.833333 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -29862 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 285.5 chr1 70685052 70685507 + 0.833333 NA Intergenic L1PB4|LINE|L1 -21174 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 269.667-25 chr7 19442034 19442796 + 0.833333 NA Intergenic LTR78|LTR|ERV1 263021 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 185.5-29 chr4 90125761 90126173 + 0.833333 NA Intergenic Intergenic -1566 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 198-40 chr8 103397470 103397769 + 0.833333 NA Intergenic LTR16A1|LTR|ERVL 17488 NM_030780 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 195.833-8 chr12 32325425 32325834 + 0.833333 NA intron (NR_148725, intron 4 of 9) (CATATA)n|Simple_repeat|Simple_repeat -73929 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 224.833-2 chr1 235953060 235953484 + 0.833333 NA Intergenic L1MC2|LINE|L1 -69559 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 311.667-22 chr8 119281258 119281886 + 0.833333 NA Intergenic Intergenic -34715 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 181.667-39 chr5 85624162 85624455 + 0.833333 NA Intergenic Intergenic -658136 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 164.333-37 chr5 30117527 30117841 + 0.833333 NA Intergenic Intergenic 237124 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 261-3 chr11 34346423 34346866 + 0.833333 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 11366 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 173.833-13 chr12 9342906 9343216 + 0.833333 NA Intergenic Intergenic -24403 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 212.5-18 chr2 63491647 63492037 + 0.833333 NA intron (NR_148704, intron 3 of 18) HAL1|LINE|L1 -53835 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 205.833-28 chr9 315970 316370 + 0.833333 NA intron (NM_001193536, intron 5 of 46) intron (NM_001193536, intron 5 of 46) 43122 NM_001193536 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 240.167-22 chr8 53016129 53016567 + 0.833333 NA Intergenic Intergenic 76440 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 465.5 chr16 64051374 64052479 + 0.833333 NA Intergenic L1M3f|LINE|L1 1070137 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 200-10 chr12 102936550 102936995 + 0.833333 NA intron (NM_001354304, intron 1 of 13) L1MA3|LINE|L1 -19528 NM_000277 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 171-60 chr8 144477050 144477500 + 0.833333 NA promoter-TSS (NM_001329443) promoter-TSS (NM_001329443) -707 NM_032902 84988 Hs.521937 NM_032902 ENSG00000160972 PPP1R16A MYPT3 protein phosphatase 1 regulatory subunit 16A protein-coding 169.667 chr1 44687565 44688211 + 0.833333 NA intron (NM_001145636, intron 1 of 11) intron (NM_001145636, intron 1 of 11) 13174 NM_001145636 339541 Hs.173679 NM_001004307 ENSG00000198520 ARMH1 C1orf228|NCRNA00082|p40 armadillo like helical domain containing 1 protein-coding 179.833-31 chr9 90718900 90719280 + 0.833333 NA Intergenic Intergenic -76266 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 167.167-26 chr5 63353687 63353937 + 0.833333 NA Intergenic Intergenic 608480 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 200.833-17 chr15 93567563 93567916 + 0.833333 NA Intergenic Intergenic -288821 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 221.5-27 chr7 105632958 105633402 + 0.833333 NA intron (NM_138495, intron 5 of 9) HAL1|LINE|L1 45975 NM_001318229 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 246.167-21 chr2 122967667 122967989 + 0.833333 NA Intergenic L1M4c|LINE|L1 105653 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 238.833-5 chr11 28163618 28164185 + 0.833333 NA intron (NM_001113528, intron 3 of 6) intron (NM_001113528, intron 3 of 6) 55513 NM_152636 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 224.167-11 chr17 66392445 66392952 + 0.833333 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 24156 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 204.833-26 chr7 17040314 17040583 + 0.833333 NA Intergenic Intergenic -158465 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 222-2 chr1 67561786 67562257 + 0.833333 NA Intergenic Intergenic -123180 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 171.167-23 chr2 179761252 179761562 + 0.833333 NA intron (NM_001352809, intron 3 of 10) L1MDa|LINE|L1 -14897 NR_148059 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 255.5-6 chr11 3723090 3723509 + 0.833333 NA exon (NM_001365127, exon 16 of 33) exon (NM_001365127, exon 16 of 33) -51915 NM_001303035 57053 Hs.732806 NM_020402 ENSG00000129749 CHRNA10 - cholinergic receptor nicotinic alpha 10 subunit protein-coding 175.667-31 chr20 59916624 59917119 + 0.833333 NA intron (NM_014258, intron 7 of 44) AluJb|SINE|Alu 16766 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 179.667-47 chr8 90645961 90646358 + 0.833333 NA promoter-TSS (NM_001146273) promoter-TSS (NM_001146273) -76 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 169.5-7 chr10 24395977 24396225 + 0.833333 NA intron (NM_019590, intron 3 of 20) AluSx1|SINE|Alu -53313 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 171.333-36 chr3 78506917 78507320 + 0.833333 NA Intergenic Intergenic -458155 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 201.333-36 chr3 63971093 63971468 + 0.833333 NA intron (NM_001128149, intron 1 of 8) intron (NM_001128149, intron 1 of 8) 3486 NM_001128149 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7|SGF73 ataxin 7 protein-coding 208.833-13 chr17 31011750 31012134 + 0.833333 NA intron (NM_001350579, intron 1 of 3) intron (NM_001350579, intron 1 of 3) 3658 NM_001350579 107984974 Hs.558901 NM_001350575 LOC107984974 - uncharacterized LOC107984974 protein-coding 211.5-29 chr2 240038749 240039113 + 0.833333 NA Intergenic L1MA4|LINE|L1 7141 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 168.333-17 chr13 113802184 113802485 + 0.833333 NA intron (NM_001348663, intron 7 of 7) intron (NM_001348663, intron 7 of 7) -13276 NR_044995 650669 Hs.369201 NM_001039799 GAS6-AS1 - GAS6 antisense RNA 1 ncRNA 324.5-7 chr3 185868758 185869381 + 0.833333 NA Intergenic Intergenic -44027 NM_006548 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 189.167-24 chr20 57353314 57353567 + 0.833333 NA intron (NM_001015885, intron 1 of 11) intron (NM_001015885, intron 1 of 11) 1878 NM_001015885 8480 Hs.371698 NM_003610 ENSG00000101146 RAE1 Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1 ribonucleic acid export 1 protein-coding 182.667-10 chr10 126519472 126519860 + 0.833333 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) 1827 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 206.167-26 chrX 101652868 101653172 + 0.833333 NA Intergenic Intergenic 6830 NM_014782 9823 Hs.48924 NM_014782 ENSG00000184867 ARMCX2 ALEX2|GASP9 armadillo repeat containing X-linked 2 protein-coding 202-19 chr2 149232915 149233358 + 0.833333 NA Intergenic Intergenic -96849 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 177.167-17 chr20 49673645 49673920 + 0.833333 NA intron (NM_004776, intron 1 of 8) L1MC5a|LINE|L1 40096 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 251.667-25 chr22 27918990 27919535 + 0.833333 NA promoter-TSS (NM_001284277) promoter-TSS (NM_001284277) -6 NM_012399 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 230.833-6 chr13 25424234 25424700 + 0.833333 NA intron (NM_016529, intron 1 of 36) intron (NM_016529, intron 1 of 36) -44307 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 175.167-32 chr4 31479535 31479747 + 0.833333 NA Intergenic Intergenic -26903 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 176.333-7 chr12 104877060 104877301 + 0.833333 NA intron (NM_032148, intron 7 of 11) intron (NM_032148, intron 7 of 11) 81110 NM_001352172 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 210.333-25 chr3 114285819 114286267 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -7985 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 191.333-5 chr10 58316828 58317203 + 0.833333 NA Intergenic Zaphod3|DNA|hAT-Tip100 12664 NR_158219 112268068 Hs.586671 NR_158219 LOC112268068 - uncharacterized LOC112268068 ncRNA 285.833-2 chr10 27669729 27670256 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -74623 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 180.333-39 chr3 56556911 56557156 + 0.833333 NA promoter-TSS (NM_001353149) promoter-TSS (NM_001353149) -123 NR_148374 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 165.667-40 chr4 177338427 177338803 + 0.833333 NA intron (NM_018248, intron 4 of 9) intron (NM_018248, intron 4 of 9) 28741 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 204.5-34 chr9 31455660 31455987 + 0.833333 NA Intergenic Intergenic -74333 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 169.333-53 chr5 170151445 170151952 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie 45801 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 320-17 chr5 138258458 138258943 + 0.833333 NA intron (NM_001496, intron 3 of 7) intron (NM_001496, intron 3 of 7) 15921 NM_001496 2676 Hs.58042 NM_001496 ENSG00000146013 GFRA3 GDNFR3 GDNF family receptor alpha 3 protein-coding 169.667-52 chr6 45228119 45228486 + 0.833333 NA intron (NM_001350325, intron 2 of 10) MLT2B4|LTR|ERVL -30532 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 180-34 chr2 19474609 19474969 + 0.833333 NA Intergenic MIRc|SINE|MIR -116166 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 253.5-16 chr19 32675321 32675737 + 0.833333 NA promoter-TSS (NM_032139) promoter-TSS (NM_032139) -319 NM_207391 388531 Hs.528491 NM_207391 ENSG00000186326 RGS9BP PERRS|R9AP|RGS9 regulator of G protein signaling 9 binding protein protein-coding 327.5-4 chr11 14033974 14034416 + 0.833333 NA intron (NM_006108, intron 2 of 15) L1ME4a|LINE|L1 71472 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 327.5-21 chr6 40085432 40086148 + 0.833333 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -151328 NM_001358530 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 189.333-3 chr10 79937746 79938169 + 0.833333 NA exon (NM_003019, exon 8 of 8) exon (NM_003019, exon 8 of 8) 11148 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 168.833-24 chr8 123818426 123818735 + 0.833333 NA Intergenic L1MC|LINE|L1 -33407 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 211.833-9 chr17 61054267 61054689 + 0.833333 NA intron (NM_001330413, intron 20 of 25) AluJb|SINE|Alu 313226 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 226.667-39 chr8 91381351 91381751 + 0.833333 NA intron (NM_134266, intron 15 of 18) intron (NM_134266, intron 15 of 18) 132232 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 167.833-4 chr1 246328511 246328800 + 0.833333 NA intron (NM_022743, intron 4 of 11) intron (NM_022743, intron 4 of 11) 88757 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 204.333-34 chr4 53013015 53013542 + 0.833333 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 150961 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 169.5-36 chr5 117024174 117024431 + 0.833333 NA Intergenic L1MA8|LINE|L1 -262093 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 205.167-26 chr5 145220501 145220902 + 0.833333 NA Intergenic Intergenic 614641 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 274.167-22 chr9 136693990 136694351 + 0.833333 NA Intergenic MER53|DNA|hAT -6713 NM_001012727 10555 Hs.320151 NM_006412 ENSG00000169692 AGPAT2 1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta 1-acylglycerol-3-phosphate O-acyltransferase 2 protein-coding 204.667-38 chr8 43129307 43129841 + 0.833333 NA Intergenic L1M4|LINE|L1 -10890 NM_152419 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|RP73|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 258-14 chr17 51460342 51460874 + 0.833333 NA Intergenic Intergenic 25181 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 197-5 chr10 7183502 7183790 + 0.833333 NA intron (NM_001029880, intron 16 of 20) intron (NM_001029880, intron 16 of 20) 3138 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 180-40 chr2 178440298 178440639 + 0.833333 NA TTS (NR_110204) TTS (NR_110204) 10160 NM_001139518 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 284-27 chr8 90674983 90675560 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -29188 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 368.333-11 chr8 124350205 124350852 + 0.833333 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 22171 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 282.5-2 chr1 175255039 175255606 + 0.833333 NA Intergenic HAL1|LINE|L1 -62335 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 208.667-17 chr15 63697110 63697447 + 0.833333 NA intron (NM_003922, intron 26 of 77) L1MD3|LINE|L1 -96451 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 203.333-38 chr3 60241270 60241674 + 0.833333 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -160563 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 164-56 chr8 123720067 123720434 + 0.833333 NA intron (NM_004306, intron 1 of 10) intron (NM_004306, intron 1 of 10) 17143 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 200.167-7 chr11 100794248 100794643 + 0.833333 NA intron (NM_001367945, intron 2 of 25) MER5A1|DNA|hAT-Charlie -106490 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 252.667-3 chr1 186305005 186305495 + 0.833333 NA intron (NM_005807, intron 6 of 12) (TCATCT)n|Simple_repeat|Simple_repeat 8977 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 274.667-12 chr19 56764074 56764509 + 0.833333 NA Intergenic Intergenic -1031 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 166.333-5 chr1 154640598 154641020 + 0.833333 NA Intergenic L1MEg|LINE|L1 -12812 NM_001365046 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 220-19 chr20 35058257 35058670 + 0.833333 NA intron (NM_199368, intron 3 of 18) L1MB8|LINE|L1 34344 NM_015638 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 232.833-29 chr9 15711582 15711971 + 0.833333 NA intron (NM_001355547, intron 10 of 24) Tigger5|DNA|TcMar-Tigger 147798 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 218-25 chr20 8828971 8829342 + 0.833333 NA intron (NM_182734, intron 32 of 32) L1ME2z|LINE|L1 -2029 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 214-26 chr2 40790123 40790562 + 0.833333 NA Intergenic Intergenic -277907 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 210.833-25 chr6 40249125 40249585 + 0.833333 NA Intergenic Intergenic 106651 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 213.5-25 chr5 112149659 112150144 + 0.833333 NA intron (NM_001347887, intron 22 of 23) L1MEd|LINE|L1 -10625 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 200.333-27 chr4 30944034 30944379 + 0.833333 NA intron (NM_001173523, intron 2 of 2) Charlie1b|DNA|hAT-Charlie 223837 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 300.167-13 chr8 60143628 60144348 + 0.833333 NA Intergenic L1MEj|LINE|L1 137412 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 171.333-15 chr14 64670748 64671076 + 0.833333 NA Intergenic Intergenic -33512 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 260.167-19 chr4 91719368 91719790 + 0.833333 NA Intergenic Intergenic 557723 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 287.667 chr1 153923228 153923739 + 0.833333 NA promoter-TSS (NM_020699) promoter-TSS (NM_020699) -511 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding 250-36 chr8 118461797 118462300 + 0.833333 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -158953 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 242.5-44 chr7 106350749 106351051 + 0.833333 NA Intergenic L1MEc|LINE|L1 -65917 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 247.667-21 chr2 185949494 185949917 + 0.833333 NA Intergenic AluYc|SINE|Alu 136612 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 358.833-7 chr22 32528523 32529077 + 0.833333 NA intron (NM_003490, intron 11 of 13) intron (NM_003490, intron 11 of 13) 53563 NM_001257990 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 191.167-6 chr11 46237321 46237550 + 0.833333 NA Intergenic L2b|LINE|L2 -40227 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 217.167-27 chr7 30352991 30353660 + 0.833333 NA intron (NM_147128, intron 2 of 4) intron (NM_147128, intron 2 of 4) -16725 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 167-7 chr11 29312666 29313050 + 0.833333 NA Intergenic MLT1J2|LTR|ERVL-MaLR -281555 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 196-41 chr7 31754011 31754498 + 0.833333 NA intron (NM_001191059, intron 18 of 18) L1MC3|LINE|L1 67039 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 238.5-16 chr2 80064330 80064761 + 0.833333 NA intron (NM_001282598, intron 7 of 17) MLT1H2|LTR|ERVL-MaLR -197962 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 345.167-8 chr4 143482609 143483329 + 0.833333 NA Intergenic Intergenic -30733 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 254.333-9 chr12 38071460 38071885 + 0.833333 NA Intergenic L1PA2|LINE|L1 -245102 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 186.333-43 chrX 101296466 101296727 + 0.833333 NA Intergenic L1MA4|LINE|L1 -3513 NM_024885 54457 Hs.223806 NM_024885 ENSG00000102387 TAF7L CT40|TAF2Q TATA-box binding protein associated factor 7 like protein-coding 198.333-10 chr10 96839498 96839915 + 0.833333 NA intron (NM_001170766, intron 2 of 8) AluSx3|SINE|Alu 6761 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 173-40 chr8 102362150 102362774 + 0.833333 NA intron (NM_001282873, intron 1 of 58) intron (NM_001282873, intron 1 of 58) 50227 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 194.833-27 chr8 29015565 29016046 + 0.833333 NA intron (NM_001324384, intron 5 of 10) MER58A|DNA|hAT-Charlie 124491 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 292.167-14 chr4 111638454 111638882 + 0.833333 NA Intergenic Intergenic -506786 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 203.5-11 chr12 44549711 44550140 + 0.833333 NA intron (NM_006159, intron 16 of 20) L1MA10|LINE|L1 325736 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 257.5-10 chr12 76455979 76456336 + 0.833333 NA intron (NM_001319652, intron 5 of 25) intron (NM_001319652, intron 5 of 25) -32872 NM_001319655 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 188.833-12 chr15 83944553 83944956 + 0.833333 NA intron (NM_207517, intron 19 of 29) MIRb|SINE|MIR -135433 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 181.5-36 chr5 43191275 43191628 + 0.833333 NA promoter-TSS (NM_153361) promoter-TSS (NM_153361) -774 NM_153361 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 219.167-17 chr7 48933818 48934337 + 0.833333 NA Intergenic Intergenic 9530 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 217.333-20 chr2 140456896 140457215 + 0.833333 NA intron (NM_018557, intron 61 of 90) intron (NM_018557, intron 61 of 90) 129630 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 181.667-10 chr12 22013220 22013533 + 0.833333 NA Intergenic Intergenic -32798 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 255.5-24 chr3 418623 418991 + 0.833333 NA Intergenic MER58A|DNA|hAT-Charlie -33012 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 168.833-6 chr14 43724870 43725239 + 0.833333 NA Intergenic Intergenic 782229 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 168-21 chr17 27350857 27351069 + 0.833333 NA Intergenic L1ME3Cz|LINE|L1 56849 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 308-11 chr2 231199207 231199656 + 0.833333 NA intron (NM_001352755, intron 1 of 20) MER5A|DNA|hAT-Charlie 800 NM_001352758 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 191.667-5 chr1 229085019 229085608 + 0.833333 NA Intergenic L1MC2|LINE|L1 89488 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 272.5-19 chr20 44187715 44188158 + 0.833333 NA promoter-TSS (NM_020433) promoter-TSS (NM_020433) -358 NM_020433 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 202.833-23 chr5 44486171 44486667 + 0.833333 NA Intergenic Intergenic 23863 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 230.333-3 chr10 28020535 28020954 + 0.833333 NA Intergenic Intergenic -21665 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 239.833-9 chr3 177248759 177249082 + 0.833333 NA Intergenic Intergenic -45522 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 209-38 chr8 28418833 28419188 + 0.833333 NA Intergenic L1MB2|LINE|L1 -32550 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 250.333-18 chr7 29505860 29506294 + 0.833333 NA intron (NR_120524, intron 3 of 3) intron (NR_120524, intron 3 of 3) 22261 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 166.667-19 chr16 22615602 22616048 + 0.833333 NA Intergenic LTR53-int|LTR|ERVL 70127 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 289.5-6 chr15 71604295 71604716 + 0.833333 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 57269 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 211.667-48 chr9 135495677 135495982 + 0.833333 NA intron (NM_001048265, intron 2 of 2) intron (NM_001048265, intron 2 of 2) 4040 NM_144654 138162 Hs.414028 NM_144654 ENSG00000160345 C9orf116 PIERCE1|RbEST47 chromosome 9 open reading frame 116 protein-coding 260.833-12 chr4 103491218 103491987 + 0.833333 NA Intergenic Intergenic 66560 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 198.167-10 chr12 124032412 124032733 + 0.833333 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 59357 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 223.333-29 chr3 160003365 160003736 + 0.833333 NA intron (NR_108088, intron 6 of 9) intron (NR_108088, intron 6 of 9) 14715 NM_001354582 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 219.5-22 chr4 93776818 93777385 + 0.833333 NA Intergenic Intergenic -51652 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 207.333-11 chr12 51536019 51536510 + 0.833333 NA Intergenic L1MC3|LINE|L1 -54969 NM_001330260 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 260.667-42 chr6 129736597 129736986 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -26614 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 283-4 chr12 79837883 79838480 + 0.833333 NA intron (NM_001244990, intron 4 of 24) THE1C-int|LTR|ERVL-MaLR 75730 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 176.5-14 chr18 71787927 71788469 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL -5972 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 253.667-7 chr11 12285142 12285484 + 0.833333 NA Intergenic LTR8|LTR|ERV1 -1587 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 214.667-25 chr22 22240474 22240771 + 0.833333 NA Intergenic AluSz6|SINE|Alu -4164 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 242.333-11 chr16 17719406 17719887 + 0.833333 NA Intergenic Intergenic -248686 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 231.167-30 chr8 15776999 15777301 + 0.833333 NA Intergenic Intergenic 236887 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 223.667-19 chr14 96482459 96482892 + 0.833333 NA intron (NM_001350890, intron 14 of 16) intron (NM_001350890, intron 14 of 16) 19651 NR_122121 730202 Hs.647565 NR_122121 LOC730202 - uncharacterized LOC730202 ncRNA 194.167-36 chr8 125655107 125655362 + 0.833333 NA Intergenic MIRb|SINE|MIR 223025 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 182.667-25 chr2 21507617 21507904 + 0.833333 NA Intergenic Intergenic 202892 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 215.667-16 chr12 119239477 119239761 + 0.833333 NA Intergenic Intergenic 60829 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 260.333-10 chr2 91420624 91420987 + 0.833333 NA Intergenic Intergenic 239144 NR_027238 654342 Hs.469287 NR_027238 LSP1P4 - LSP1 pseudogene 4 pseudo 172.667-34 chr2 207161887 207162143 + 0.833333 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 3933 NM_003709 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 177.333-26 chr4 66850681 66851140 + 0.833333 NA Intergenic Intergenic 571090 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 267.5-13 chr14 51519516 51519872 + 0.833333 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 30566 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 231-10 chr14 54160311 54160825 + 0.833333 NA Intergenic Intergenic -203677 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 267.167-10 chr4 73663973 73664442 + 0.833333 NA Intergenic Intergenic -43576 NM_201431 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 169.5-24 chr2 221936037 221936343 + 0.833333 NA Intergenic Intergenic -361957 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 167.833-6 chr11 28820340 28820874 + 0.833333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -343059 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 320.666-4 chr10 25378522 25379241 + 0.833333 NA intron (NM_020752, intron 2 of 10) AluJo|SINE|Alu -202605 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 173.167-29 chr4 48129256 48129847 + 0.833333 NA intron (NM_003328, intron 1 of 14) intron (NM_003328, intron 1 of 14) 4699 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 223.167-8 chr17 18140602 18141014 + 0.833333 NA exon (NM_016239, exon 20 of 65) exon (NM_016239, exon 20 of 65) 32052 NM_016239 51168 Hs.462390 NM_016239 ENSG00000091536 MYO15A DFNB3|MYO15 myosin XVA protein-coding 183.5-35 chr4 76459385 76459636 + 0.833333 NA intron (NM_020859, intron 1 of 10) AmnSINE1|SINE|5S-Deu-L2 24281 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 283.333-10 chr18 51620900 51621345 + 0.833333 NA Intergenic Intergenic 229080 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 165.5-31 chr3 52270029 52270239 + 0.833333 NA intron (NM_025222, intron 2 of 8) AluSx|SINE|Alu -1773 NR_029660 406890 NR_029660 ENSG00000199150 MIRLET7G LET7G|MIRNLET7G|hsa-let-7g|let-7g microRNA let-7g ncRNA 240-8 chr11 66747338 66747901 + 0.833333 NA intron (NM_001302084, intron 1 of 14) MIR|SINE|MIR 2850 NM_001302084 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 HYDM4|TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 209.333-35 chr5 167196496 167196769 + 0.833333 NA intron (NM_001122679, intron 1 of 29) MER2|DNA|TcMar-Tigger -28231 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 164-7 chr10 115222282 115222584 + 0.833333 NA intron (NM_207303, intron 9 of 28) L1MEg|LINE|L1 129068 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 165.833-8 chr10 122872983 122873343 + 0.833333 NA intron (NM_152644, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 6418 NM_152644 196792 Hs.114648 NM_152644 ENSG00000213185 FAM24B - family with sequence similarity 24 member B protein-coding 214-41 chr4 32775253 32775634 + 0.833333 NA Intergenic Intergenic 424405 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 185-15 chr12 1431489 1431741 + 0.833333 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -68876 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 217.667-18 chr13 49858141 49858695 + 0.833333 NA Intergenic Intergenic -31991 NR_003268 220429 Hs.448219 NR_003268 ENSG00000181358 CTAGE10P - CTAGE family member 10, pseudogene pseudo 183.333-19 chr12 119429266 119429552 + 0.833333 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 94680 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 172.667-45 chr5 43106229 43106531 + 0.833333 NA Intergenic Intergenic -14534 NM_001330704 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 174.833-24 chr7 115066760 115067039 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie -12059 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 284.333-4 chr10 123321564 123321980 + 0.833333 NA Intergenic Intergenic 167370 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 229.833-24 chr8 136409337 136409734 + 0.833333 NA Intergenic MSTB1|LTR|ERVL-MaLR -121263 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 172.667-37 chr20 46568613 46568869 + 0.833333 NA intron (NM_001193340, intron 10 of 12) intron (NM_001193340, intron 10 of 12) -18087 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 172.5-18 chr16 71845602 71845993 + 0.833333 NA promoter-TSS (NM_001137675) promoter-TSS (NM_001137675) -179 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1 like protein-coding 201.167-7 chr11 45264735 45265067 + 0.833333 NA intron (NM_001247987, intron 2 of 7) L1ME2z|LINE|L1 21440 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 166.5-9 chr12 20794464 20794727 + 0.833333 NA Intergenic AluY|SINE|Alu -16110 NM_019844 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 238.5-19 chr2 216684974 216685437 + 0.833333 NA intron (NM_000599, intron 1 of 3) AluSg|SINE|Alu 10344 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 234.5-19 chr18 48382397 48382794 + 0.833333 NA intron (NM_001371287, intron 1 of 5) Tigger19a|DNA|TcMar-Tigger -6968 NM_001371290 193.5-5 chr1 114685300 114685665 + 0.833333 NA intron (NM_001172626, intron 3 of 14) intron (NM_001172626, intron 3 of 14) 10136 NM_000036 270 Hs.89570 NM_000036 ENSG00000116748 AMPD1 MAD|MADA|MMDD adenosine monophosphate deaminase 1 protein-coding 175.167-21 chr18 77067331 77067683 + 0.833333 NA intron (NM_001025100, intron 2 of 3) intron (NM_001025100, intron 2 of 3) -50452 NM_002385 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 276.333-11 chr6 66241352 66241871 + 0.833333 NA Intergenic Intergenic 453732 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 198.5-15 chr16 1860145 1860538 + 0.833333 NA intron (NM_001163560, intron 5 of 13) intron (NM_001163560, intron 5 of 13) 11823 NM_001163560 254528 Hs.729604 NM_152764 ENSG00000162039 MEIOB C16orf73|SPGF22|gs129 meiosis specific with OB-fold protein-coding 240-21 chr15 64284850 64285334 + 0.833333 NA intron (NM_001329607, intron 2 of 11) intron (NM_001329607, intron 2 of 11) 71081 NM_001329607 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 174-27 chr2 109492199 109492601 + 0.833333 NA intron (NM_001099289, intron 9 of 9) intron (NM_001099289, intron 9 of 9) 121267 NM_001321513 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 167.333-37 chr3 89055430 89055806 + 0.833333 NA Intergenic LTR53-int|LTR|ERVL -52003 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 189.5-13 chr15 67876889 67877280 + 0.833333 NA Intergenic (TATGAA)n|Simple_repeat|Simple_repeat -37039 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 220.5-19 chr17 70173157 70173696 + 0.833333 NA intron (NM_000891, intron 1 of 1) intron (NM_000891, intron 1 of 1) 3891 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 188.167-39 chr9 32693478 32694073 + 0.833333 NA Intergenic L1MA1|LINE|L1 -58106 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 205.667-36 chr6 130950019 130950327 + 0.833333 NA intron (NR_146620, intron 1 of 12) L1MEh|LINE|L1 20310 NM_001350302 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 212.167-16 chr8 113405925 113406484 + 0.833333 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) -29052 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 256.5-19 chr3 49285781 49286108 + 0.833333 NA intron (NM_199443, intron 15 of 20) intron (NM_199443, intron 15 of 20) -8712 NM_198562 375341 Hs.403828 NM_198562 ENSG00000188315 C3orf62 - chromosome 3 open reading frame 62 protein-coding 188.833-30 chr4 33105199 33105496 + 0.833333 NA Intergenic Intergenic 754309 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 168.167-20 chr2 126967242 126967636 + 0.833333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 68549 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 213.667-18 chr17 76750795 76751090 + 0.833333 NA intron (NM_001353019, intron 8 of 13) AluSx1|SINE|Alu 13441 NR_148232 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 228.5-27 chr5 12478459 12478865 + 0.833333 NA Intergenic L1M5|LINE|L1 -96195 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 178.667-45 chr8 130728125 130728385 + 0.833333 NA Intergenic L2a|LINE|L2 -284581 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 179.5-34 chr4 34048371 34048597 + 0.833333 NA Intergenic L1ME3C|LINE|L1 -8591 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 198.167-14 chr16 53641873 53642262 + 0.833333 NA intron (NM_001127897, intron 17 of 24) intron (NM_001127897, intron 17 of 24) 61792 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 225-4 chr1 199009204 199009566 + 0.833333 NA intron (NR_110525, intron 1 of 2) intron (NR_110525, intron 1 of 2) -6748 NR_126351 104266961 Hs.576501 NR_126351 ENSG00000235492 LINC01221 TCONS_00000366 long intergenic non-protein coding RNA 1221 ncRNA 183.833 chr1 36188060 36188548 + 0.833333 NA Intergenic Intergenic 32144 NM_001286366 55700 Hs.356096 NM_018067 ENSG00000116871 MAP7D1 PARCC1|RPRC1 MAP7 domain containing 1 protein-coding 215.333-26 chr2 166929537 166929929 + 0.833333 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 41246 NM_152381 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 243.333-20 chr17 60625321 60625722 + 0.833333 NA intron (NM_003620, intron 2 of 5) L1ME4a|LINE|L1 25338 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 191-41 chr6 35258979 35259388 + 0.833333 NA promoter-TSS (NM_003427) promoter-TSS (NM_003427) -552 NM_003427 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 187.167-30 chr9 11145836 11146154 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR 532789 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 194.667-30 chr18 1413868 1414124 + 0.833333 NA Intergenic Intergenic -54367 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 195.167-14 chr15 60782894 60783237 + 0.833333 NA intron (NM_134261, intron 1 of 10) L1ME4c|LINE|L1 101496 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 259.5-22 chr3 87171640 87172332 + 0.833333 NA Intergenic MIRb|SINE|MIR 54291 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 188-46 chr6 150620500 150620883 + 0.833333 NA intron (NM_001329799, intron 1 of 15) L2a|LINE|L2 -12273 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 228.667-44 chr6 44662708 44663051 + 0.833333 NA Intergenic Intergenic -110998 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 192.5-7 chr10 119246574 119246928 + 0.833333 NA intron (NM_005308, intron 1 of 15) intron (NM_005308, intron 1 of 15) 39180 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 258-27 chr4 175566391 175566853 + 0.833333 NA Intergenic MLT2B4|LTR|ERVL 221054 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 169.5-4 chr1 113811542 113811856 + 0.833333 NA promoter-TSS (NR_125965) promoter-TSS (NR_125965) 777 NR_130896 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 233.167-15 chr4 58082671 58083144 + 0.833333 NA Intergenic Intergenic 453421 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 168.333-62 chr8 19649025 19649266 + 0.833333 NA intron (NR_148898, intron 1 of 9) MIR|SINE|MIR 33438 NM_018371 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 224.667-30 chr2 240586389 240586759 + 0.833333 NA promoter-TSS (NR_103792) promoter-TSS (NR_103792) -160 NM_023085 11132 Hs.728234 NM_021251 ENSG00000142330 CAPN10 CANP10|NIDDM1 calpain 10 protein-coding 168-34 chr3 112738919 112739293 + 0.833333 NA intron (NR_110017, intron 3 of 4) intron (NR_110017, intron 3 of 4) 2017 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 224.5-34 chr5 38021921 38022405 + 0.833333 NA Intergenic Intergenic -3534 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 196.167-6 chr11 81191002 81191408 + 0.833333 NA Intergenic L2c|LINE|L2 -428402 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 201.667-48 chr6 155081216 155081568 + 0.833333 NA Intergenic Tigger10|DNA|TcMar-Tigger -8897 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 196.333-14 chr14 46832966 46833360 + 0.833333 NA Intergenic Intergenic -181382 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 191.833-3 chr10 20853907 20854254 + 0.833333 NA intron (NM_006393, intron 9 of 27) intron (NM_006393, intron 9 of 27) 43522 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 169.167-23 chr4 22312247 22312685 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR 27200 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 232.833-6 chr1 168497586 168498010 + 0.833333 NA Intergenic Intergenic -2154 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 217.333-9 chr11 19325154 19325641 + 0.833333 NA Intergenic L1PA13|LINE|L1 -25327 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 166-68 chr9 29430629 29430987 + 0.833333 NA Intergenic L1MA9|LINE|L1 -217207 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 241.167-6 chr12 7583952 7584380 + 0.833333 NA Intergenic LTR10A|LTR|ERV1 -80348 NM_004244 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 188.833-35 chr7 15579359 15579697 + 0.833333 NA Intergenic AluSp|SINE|Alu -17513 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 185-11 chr10 70364492 70364774 + 0.833333 NA intron (NR_103468, intron 1 of 2) intron (NR_103468, intron 1 of 2) 12146 NM_001278213 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 271.5-35 chr6 22239648 22240237 + 0.833333 NA Intergenic Intergenic 57094 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 193-32 chr5 139258399 139258838 + 0.833333 NA Intergenic L2|LINE|L2 -15134 NM_001282278 9782 Hs.268939 NM_018834 ENSG00000015479 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 203.333-25 chr17 65064563 65064894 + 0.833333 NA Intergenic Intergenic -7988 NM_006572 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 343.667-17 chr7 83656703 83657160 + 0.833333 NA Intergenic Intergenic -7792 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 255.333-19 chr5 23875114 23875617 + 0.833333 NA Intergenic Intergenic -75983 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 218.667-35 chr8 49608553 49608940 + 0.833333 NA Intergenic L1MEh|LINE|L1 -96566 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 176.667-33 chr21 16360969 16361287 + 0.833333 NA intron (NR_027790, intron 4 of 7) L1MA5A|LINE|L1 -58075 NR_136546 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 177.167-32 chr8 115976478 115976718 + 0.833333 NA intron (NR_046215, intron 8 of 13) intron (NR_046215, intron 8 of 13) -307623 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 246.833-8 chr2 178557915 178558401 + 0.833333 NA exon (NM_133432, exon 157 of 192) exon (NM_133432, exon 157 of 192) 34967 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 237.333-27 chr3 111926636 111927102 + 0.833333 NA intron (NM_001134437, intron 6 of 17) MER46C|DNA|TcMar-Tigger -52157 NM_001272069 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 192.833-31 chr6 148487129 148487454 + 0.833333 NA intron (NM_001346506, intron 8 of 20) intron (NM_001346506, intron 8 of 20) -21208 NM_001346507 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 266.5-27 chr8 117166896 117167437 + 0.833333 NA intron (NM_173851, intron 6 of 7) intron (NM_173851, intron 6 of 7) 32171 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 204.667-43 chr9 37145772 37146227 + 0.833333 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 25401 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 165.833-16 chr16 77764937 77765381 + 0.833333 NA Intergenic AluSz|SINE|Alu -23405 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 265.167-15 chr8 121172073 121172524 + 0.833333 NA Intergenic GA-rich|Low_complexity|Low_complexity -360252 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 182.5-36 chr6 53028234 53028666 + 0.833333 NA intron (NM_014920, intron 5 of 13) MIR|SINE|MIR 32830 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 210.667-54 chr8 113201976 113202408 + 0.833333 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 174960 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 177.667-31 chr3 197956829 197957061 + 0.833333 NA TTS (NM_001316311) TTS (NM_001316311) 3046 NM_032263 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 233.333-30 chr7 3720794 3721096 + 0.833333 NA intron (NM_152744, intron 4 of 44) L1MD2|LINE|L1 -408740 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 245.167-15 chr6 158169995 158170340 + 0.833333 NA intron (NM_207118, intron 1 of 2) intron (NM_207118, intron 1 of 2) 1820 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 220-16 chr19 55407891 55408240 + 0.833333 NA promoter-TSS (NM_014501) promoter-TSS (NM_014501) -277 NM_014501 27338 Hs.396393 NM_014501 ENSG00000108106 UBE2S E2-EPF|E2EPF|EPF5 ubiquitin conjugating enzyme E2 S protein-coding 207.333-16 chr15 26625816 26626135 + 0.833333 NA intron (NR_103801, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 3115 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 171.167-40 chrX 128976353 128976595 + 0.833333 NA Intergenic Intergenic 547016 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 318-6 chr12 32894908 32895346 + 0.833333 NA intron (NM_001005242, intron 1 of 12) MIRb|SINE|MIR 1719 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 217.333-41 chr7 30745200 30745646 + 0.833333 NA Intergenic Intergenic -6712 NR_037598 100526825 Hs.660192 NR_037598 ENSG00000254959 INMT-MINDY4 INMT-FAM188B INMT-MINDY4 readthrough (NMD candidate) ncRNA 225.333-21 chr18 12733427 12733751 + 0.833333 NA Intergenic L1M3c|LINE|L1 15833 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 188.333-30 chr4 6979723 6979967 + 0.833333 NA intron (NM_020773, intron 3 of 13) L1MEf|LINE|L1 -7364 NM_001113363 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 197-10 chr15 62336998 62337423 + 0.833333 NA Intergenic Intergenic -5819 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 223.5-7 chr12 30837894 30838199 + 0.833333 NA Intergenic AluJr|SINE|Alu 42365 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 284-29 chr9 27400757 27401288 + 0.833333 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -103872 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 165.333-20 chr14 68250769 68251186 + 0.833333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 377810 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 225.333-14 chr12 98695675 98696066 + 0.833333 NA intron (NM_001160, intron 16 of 25) HAL1|LINE|L1 50570 NM_181869 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 164.167-43 chr5 175082883 175083145 + 0.833333 NA Intergenic L1MD|LINE|L1 -87283 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 232-9 chr11 14198085 14198696 + 0.833333 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 160095 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 169.167-14 chr2 31540867 31541186 + 0.833333 NA intron (NM_000348, intron 1 of 4) L1MB3|LINE|L1 39912 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 166-2 chr1 72047764 72048069 + 0.833333 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -210904 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 199.333-9 chr11 12076344 12076751 + 0.833333 NA Intergenic Intergenic -34029 NM_001282668 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 193.5-30 chr20 57896488 57897016 + 0.833333 NA Intergenic Intergenic -107152 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 233.333-6 chr12 60640629 60641075 + 0.833333 NA Intergenic Intergenic 951482 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 180.667-25 chr19 13092852 13093144 + 0.833333 NA intron (NM_001365984, intron 9 of 9) intron (NM_001365984, intron 9 of 9) 9860 NM_005583 4066 Hs.46446 NM_005583 ENSG00000104903 LYL1 bHLHa18 LYL1 basic helix-loop-helix family member protein-coding 249.5-26 chr8 123134023 123134415 + 0.833333 NA intron (NM_001363149, intron 17 of 21) intron (NM_001363149, intron 17 of 21) -44828 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 197-7 chr11 95134382 95134917 + 0.833333 NA Intergenic Intergenic -15890 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 168.667-24 chr20 32483868 32484206 + 0.833333 NA promoter-TSS (NM_080616) promoter-TSS (NM_080616) -547 NM_001351680 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 224-18 chr16 30817353 30817818 + 0.833333 NA Intergenic AluSx1|SINE|Alu -30380 NM_001080417 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 163.333-13 chr11 84212683 84212939 + 0.833333 NA intron (NM_001142700, intron 1 of 19) AluSc8|SINE|Alu 60469 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 172.667-32 chr2 142233842 142234309 + 0.833333 NA Intergenic L1MA9|LINE|L1 -102374 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 237.5-22 chr2 72675991 72676390 + 0.833333 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 149843 NM_001321729 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 255-15 chr16 53160043 53160454 + 0.833333 NA intron (NM_001352127, intron 2 of 38) intron (NM_001352127, intron 2 of 38) 4322 NM_001308319 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 385.167-3 chr10 5628968 5629629 + 0.833333 NA Intergenic Intergenic -33180 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LINC02657 - long intergenic non-protein coding RNA 2657 ncRNA 199-9 chr11 17953255 17953762 + 0.833333 NA intron (NR_104040, intron 9 of 11) intron (NR_104040, intron 9 of 11) 59539 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 189.5-33 chr6 69241449 69241946 + 0.833333 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 554769 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 173.833-28 chr5 20212633 20213131 + 0.833333 NA intron (NM_001291956, intron 2 of 14) Tigger1|DNA|TcMar-Tigger -92669 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 224.167-6 chr11 24536807 24537100 + 0.833333 NA intron (NM_001252008, intron 1 of 11) Tigger1|DNA|TcMar-Tigger 39900 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 247-28 chr5 159358606 159358955 + 0.833333 NA intron (NR_037889, intron 4 of 4) MLT1K|LTR|ERVL-MaLR 27262 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 258.333-2 chr1 225554737 225555104 + 0.833333 NA exon (NM_018212, exon 3 of 14) exon (NM_018212, exon 3 of 14) 98203 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 205.5 chr1 85298439 85298723 + 0.833333 NA Intergenic Intergenic -21949 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 295.5-9 chr3 19031465 19032001 + 0.833333 NA Intergenic L1MA3|LINE|L1 -116777 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 212.333-27 chr5 165498374 165498673 + 0.833333 NA Intergenic Intergenic 1028244 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 164.167-6 chr10 34623143 34623380 + 0.833333 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 192035 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 200-33 chr5 109592778 109593164 + 0.833333 NA Intergenic MamTip3|DNA|hAT-Tip100 -96395 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 223.667-10 chr11 66593592 66594034 + 0.833333 NA promoter-TSS (NM_018219) promoter-TSS (NM_018219) 628 NM_005125 9973 Hs.502917 NM_005125 ENSG00000173992 CCS - copper chaperone for superoxide dismutase protein-coding 312-5 chr12 57127336 57128377 + 0.833333 NA promoter-TSS (NM_002332) promoter-TSS (NM_002332) -627 NM_002332 4035 Hs.162757 NM_002332 ENSG00000123384 LRP1 A2MR|APOER|APR|CD91|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5 LDL receptor related protein 1 protein-coding 181.333-41 chr8 90104862 90105221 + 0.833333 NA Intergenic L1MCa|LINE|L1 -22162 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 190.833-24 chr6 912776 913055 + 0.833333 NA Intergenic Intergenic 44417 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 170.667-56 chr9 14077087 14077366 + 0.833333 NA Intergenic Intergenic 103576 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 307.833-6 chr3 17507957 17508487 + 0.833333 NA intron (NM_001349081, intron 2 of 21) intron (NM_001349081, intron 2 of 21) 191798 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 257.5-6 chr10 123631159 123631677 + 0.833333 NA Intergenic Intergenic -34937 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 167.167-30 chr6 135883987 135884345 + 0.833333 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 32465 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 221.667-8 chr10 84892268 84892660 + 0.833333 NA Intergenic MSTB1|LTR|ERVL-MaLR 306441 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 199.5-40 chr6 50686890 50687446 + 0.833333 NA Intergenic Intergenic -26376 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 185.667-49 chrX 120789956 120790259 + 0.833333 NA Intergenic Intergenic 85818 NM_001145718 643311 Hs.729566 NM_001145718 ENSG00000236446 CT47B1 CT47.13|CT47A13 cancer/testis antigen family 47 member B1 protein-coding 232.167-14 chr4 73825366 73825922 + 0.833333 NA Intergenic Intergenic -11034 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 217.833-6 chr11 12545014 12545470 + 0.833333 NA Intergenic Intergenic -129179 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 176.5-33 chr5 167947941 167948312 + 0.833333 NA intron (NM_001368145, intron 2 of 26) intron (NM_001368145, intron 2 of 26) 193197 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 205.833-15 chr18 1692997 1693382 + 0.833333 NA Intergenic L1MC3|LINE|L1 -333560 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 275.5-19 chr3 45298256 45298683 + 0.833333 NA Intergenic Intergenic -72182 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 240.333-19 chr5 57287521 57288037 + 0.833333 NA Intergenic L1MA2|LINE|L1 73705 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 249.167-30 chr9 91950339 91950990 + 0.833333 NA promoter-TSS (NM_004560) promoter-TSS (NM_004560) -436 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 261.167-17 chr4 135341430 135341791 + 0.833333 NA Intergenic Intergenic -218051 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 199.667-40 chr6 75879632 75879984 + 0.833333 NA intron (NM_001300899, intron 20 of 32) intron (NM_001300899, intron 20 of 32) 130569 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 172.833-29 chr6 127466871 127467121 + 0.833333 NA intron (NM_001012279, intron 7 of 11) intron (NM_001012279, intron 7 of 11) -7607 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 245.333-4 chr11 46561997 46562361 + 0.833333 NA intron (NM_001267782, intron 1 of 19) L2a|LINE|L2 25265 NR_160027 55626 Hs.654644 NM_017749 ENSG00000110497 AMBRA1 DCAF3|WDR94 autophagy and beclin 1 regulator 1 protein-coding 264.833-19 chr22 31345215 31345554 + 0.833333 NA exon (NM_032052, exon 1 of 5) exon (NM_032052, exon 1 of 5) 962 NM_032051 23598 Hs.731398 NM_014323 ENSG00000100105 PATZ1 MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 POZ/BTB and AT hook containing zinc finger 1 protein-coding 204.333-33 chr4 39231571 39231861 + 0.833333 NA intron (NM_025132, intron 17 of 36) intron (NM_025132, intron 17 of 36) 49187 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 200-27 chr3 30967575 30967968 + 0.833333 NA Intergenic HAL1|LINE|L1 -73110 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 180.833 chr1 40130216 40130609 + 0.833333 NA Intergenic L1M4|LINE|L1 -30975 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 262.667-12 chr12 26146058 26146445 + 0.833333 NA Intergenic Intergenic -21214 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 184-6 chr1 245780408 245780695 + 0.833333 NA intron (NM_022743, intron 10 of 11) L1MB7|LINE|L1 -546034 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 180.5-6 chr1 206635037 206635410 + 0.833333 NA promoter-TSS (NM_003582) promoter-TSS (NM_003582) -313 NM_003582 8444 Hs.164267 NM_003582 ENSG00000143479 DYRK3 DYRK5|RED|REDK|hYAK3-2 dual specificity tyrosine phosphorylation regulated kinase 3 protein-coding 187.667-38 chr5 137884042 137884398 + 0.833333 NA intron (NM_006790, intron 7 of 9) AluJo|SINE|Alu -5237 NM_001300921 27039 Hs.716884 NM_014386 ENSG00000078795 PKD2L2 TRPP5 polycystin 2 like 2, transient receptor potential cation channel protein-coding 203.167-22 chr3 162847760 162848108 + 0.833333 NA Intergenic Intergenic 455367 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 190-14 chr12 11609005 11609549 + 0.833333 NA Intergenic MER34C2|LTR|ERV1 -40577 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 234.167-22 chr5 43116622 43117079 + 0.833333 NA Intergenic L2b|LINE|L2 -4064 NM_001330704 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 228.333-2 chr1 206488953 206489459 + 0.833333 NA intron (NM_001193321, intron 15 of 20) intron (NM_001193321, intron 15 of 20) 14403 NR_106919 102466202 NR_106919 ENSG00000278465 MIR6769B hsa-mir-6769b microRNA 6769b ncRNA 205.667-28 chr22 47929020 47929303 + 0.833333 NA Intergenic AluJb|SINE|Alu 297487 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 171.833-25 chr5 114609413 114609804 + 0.833333 NA intron (NR_130785, intron 3 of 12) L1MA5A|LINE|L1 33567 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 234.5-8 chr10 116791237 116791524 + 0.833333 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) 36188 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 196.833-3 chr12 86408513 86408878 + 0.833333 NA intron (NM_001351286, intron 3 of 7) intron (NM_001351286, intron 3 of 7) -151396 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 176.5-39 chr7 66271280 66271548 + 0.833333 NA intron (NM_003596, intron 2 of 5) AluY|SINE|Alu 66080 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 232.833-10 chr12 47086068 47086434 + 0.833333 NA intron (NM_138371, intron 1 of 3) intron (NM_138371, intron 1 of 3) -6292 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 224.167-21 chr2 68749236 68749660 + 0.833333 NA intron (NM_001364821, intron 1 of 10) intron (NM_001364821, intron 1 of 10) 14071 NM_001364821 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 197.5-12 chr14 59282232 59282662 + 0.833333 NA intron (NM_001270520, intron 2 of 24) MIRb|SINE|MIR 19006 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 176.667-18 chr17 527349 527682 + 0.833333 NA intron (NM_001128159, intron 19 of 21) L1ME3|LINE|L1 -81575 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 232.5-29 chr6 111585544 111585947 + 0.833333 NA intron (NM_147686, intron 2 of 8) intron (NM_147686, intron 2 of 8) -18466 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 201.833-13 chr22 44234993 44235370 + 0.833333 NA Intergenic AluSz6|SINE|Alu 54256 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 257.167-11 chr8 123710662 123711082 + 0.833333 NA intron (NM_001003954, intron 3 of 11) intron (NM_001003954, intron 3 of 11) 26521 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 176.333-19 chr20 56184002 56184248 + 0.833333 NA Intergenic MIRb|SINE|MIR -64607 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 237-24 chr3 31531685 31532086 + 0.833333 NA Intergenic CpG -1040 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 213.333-50 chrX 28001002 28001409 + 0.833333 NA Intergenic Intergenic -19756 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 184.5-53 chr8 118972768 118973214 + 0.833333 NA intron (NM_001324095, intron 1 of 7) THE1C|LTR|ERVL-MaLR 20728 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 213-42 chr8 98931819 98932253 + 0.833333 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 10574 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 194.667-7 chr1 225142408 225142965 + 0.833333 NA intron (NM_001367479, intron 28 of 85) AluSz|SINE|Alu 213011 NM_001145154 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 211.167-8 chr14 72094082 72094493 + 0.833333 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 160760 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 173.667-20 chr16 7333415 7333634 + 0.833333 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 679 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 267.333-9 chr14 58364921 58365426 + 0.833333 NA exon (NM_023000, exon 20 of 24) exon (NM_023000, exon 20 of 24) -30757 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 305.166-7 chr8 82729680 82730401 + 0.833333 NA Intergenic Intergenic -182064 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 176.167-13 chr14 20529080 20529508 + 0.833333 NA Intergenic AluSc|SINE|Alu 18822 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 228.833-17 chr9 74360794 74361163 + 0.833333 NA Intergenic Intergenic -10553 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 178.5-30 chr3 107481973 107482342 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -40805 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 341.833-5 chr5 127723671 127724274 + 0.833333 NA intron (NM_001317938, intron 2 of 6) intron (NM_001317938, intron 2 of 6) 20583 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 188-17 chr16 50202689 50202961 + 0.833333 NA intron (NM_001365324, intron 1 of 11) intron (NM_001365324, intron 1 of 11) 49344 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 175.667-4 chr1 219770855 219771202 + 0.833333 NA Intergenic Intergenic 157623 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 163.5-47 chr7 132371482 132371888 + 0.833333 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 110824 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 267-6 chr10 114757319 114757684 + 0.833333 NA intron (NM_001322886, intron 1 of 20) L2a|LINE|L2 -7287 NR_120628 101927692 Hs.576909 NR_120628 ENSG00000228484 LOC101927692 - uncharacterized LOC101927692 ncRNA 202.333-26 chr3 47108355 47108683 + 0.833333 NA intron (NR_146158, intron 5 of 21) intron (NR_146158, intron 5 of 21) 55458 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 171.167-3 chr1 103464845 103465304 + 0.833333 NA intron (NM_001347930, intron 1 of 4) Charlie2b|DNA|hAT-Charlie 60437 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 293.667-17 chr3 159829666 159830067 + 0.833333 NA intron (NM_001197113, intron 5 of 10) Charlie15b|DNA|hAT-Charlie -9995 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 195-38 chr5 67899008 67899425 + 0.833333 NA Intergenic Intergenic 106003 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 232.667-38 chr8 68079377 68079918 + 0.833333 NA intron (NM_024870, intron 15 of 39) intron (NM_024870, intron 15 of 39) 127601 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 269-15 chr2 161108483 161108837 + 0.833333 NA Intergenic Charlie1|DNA|hAT-Charlie -28295 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 268.333-5 chr14 50878111 50878511 + 0.833333 NA intron (NM_001206673, intron 2 of 12) intron (NM_001206673, intron 2 of 12) 6151 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 181-36 chr6 136973109 136973462 + 0.833333 NA Intergenic Intergenic 19946 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 188-53 chr8 83394882 83395121 + 0.833333 NA Intergenic L1MA10|LINE|L1 -8757 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 245.833-15 chr18 5277045 5277369 + 0.833333 NA Intergenic MER34B|LTR|ERV1 18519 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 186.167-28 chr8 144568396 144568810 + 0.833333 NA intron (NM_025251, intron 2 of 10) L1ME1|LINE|L1 37092 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 179-41 chr7 77188537 77188917 + 0.833333 NA intron (NM_020879, intron 2 of 18) ERVL-E-int|LTR|ERVL 11092 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 172.334-7 chr8 60615343 60615896 + 0.833333 NA intron (NM_002865, intron 6 of 7) intron (NM_002865, intron 6 of 7) -63121 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 190.333-11 chr12 29454401 29454746 + 0.833333 NA intron (NM_001353179, intron 21 of 25) intron (NM_001353179, intron 21 of 25) 45120 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 188-27 chr2 100788828 100789113 + 0.833333 NA Intergenic Intergenic -31169 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 232-28 chr22 27762068 27762589 + 0.833333 NA intron (NM_002430, intron 1 of 1) MIRb|SINE|MIR 39428 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 181.333-28 chr3 7249545 7249956 + 0.833333 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) 285534 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 174.5-10 chr12 106595902 106596239 + 0.833333 NA intron (NM_213594, intron 1 of 17) intron (NM_213594, intron 1 of 17) -5078 NM_001206691 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 187.667-6 chr10 132940280 132940566 + 0.833333 NA intron (NM_001200049, intron 4 of 57) intron (NM_001200049, intron 4 of 57) 2147 NM_001200049 54777 Hs.298038 NM_017609 ENSG00000171811 CFAP46 C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3 cilia and flagella associated protein 46 protein-coding 164.167-31 chr22 30484572 30484966 + 0.833333 NA Intergenic L2c|LINE|L2 -3013 NR_001580 376844 Hs.534651 NR_001580 SDC4P - syndecan 4 pseudogene pseudo 198.833-11 chr13 46802480 46802999 + 0.833333 NA Intergenic Intergenic -5578 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 207-9 chr12 107093598 107094066 + 0.833333 NA promoter-TSS (NM_004075) promoter-TSS (NM_004075) -283 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 180-10 chr11 61827989 61828518 + 0.833333 NA promoter-TSS (NM_004265) promoter-TSS (NM_004265) -47 NM_004265 9415 Hs.502745 NM_004265 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 184.667-50 chr9 8411372 8411842 + 0.833333 NA intron (NM_130392, intron 20 of 30) intron (NM_130392, intron 20 of 30) 322339 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 172-6 chr11 32300944 32301373 + 0.833333 NA Intergenic L1MB8|LINE|L1 99242 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 238.167-14 chr17 80810617 80810983 + 0.833333 NA intron (NM_020761, intron 7 of 33) L1ME1|LINE|L1 -5168 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 165.833-4 chr1 197311033 197311306 + 0.833333 NA intron (NM_001257965, intron 3 of 14) L1MA9|LINE|L1 42917 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 213.833-4 chr10 88979334 88979751 + 0.833333 NA intron (NM_001320855, intron 1 of 8) intron (NM_001320855, intron 1 of 8) -11256 NR_028034 355 Hs.244139 NM_000043 ENSG00000026103 FAS ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6 Fas cell surface death receptor protein-coding 212.5-27 chr4 69810043 69810421 + 0.833333 NA Intergenic MIR3|SINE|MIR -49612 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 268-15 chr14 26742988 26743497 + 0.833333 NA intron (NR_147061, intron 3 of 6) intron (NR_147061, intron 3 of 6) -66106 NR_110557 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 183.333-10 chr10 74383123 74383594 + 0.833333 NA intron (NM_001369124, intron 4 of 9) intron (NM_001369124, intron 4 of 9) 145966 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 193.333-11 chr12 12884092 12884517 + 0.833333 NA Intergenic Intergenic -6718 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 368.5-3 chr10 38010516 38011473 + 0.833333 NA intron (NM_001278170, intron 1 of 3) CpG 319 NM_001278177 7581 Hs.435774 NM_006954 ENSG00000189180 ZNF33A KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK zinc finger protein 33A protein-coding 299-23 chr8 88327865 88328353 + 0.833333 NA promoter-TSS (NM_005941) promoter-TSS (NM_005941) -626 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 279.667-17 chr3 154039989 154040554 + 0.833333 NA intron (NR_037901, intron 2 of 3) L1MB2|LINE|L1 -80732 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 207-23 chr5 74364998 74365470 + 0.833333 NA Intergenic Intergenic 42748 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 203.167-8 chr16 54817647 54817934 + 0.833333 NA Intergenic Intergenic 30443 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 281-3 chr1 27334835 27335524 + 0.833333 NA intron (NR_037580, intron 7 of 7) intron (NR_037580, intron 7 of 7) -6843 NM_032872 84958 Hs.469175 NM_032872 ENSG00000142765 SYTL1 JFC1|SLP1 synaptotagmin like 1 protein-coding 316.5-20 chr3 179374012 179374580 + 0.833333 NA intron (NM_033540, intron 9 of 17) (TA)n|Simple_repeat|Simple_repeat 26587 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 169.333-47 chr4 64835413 64835652 + 0.833333 NA Intergenic Intergenic 168968 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 174.167-45 chr8 142383342 142383706 + 0.833333 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 19658 NM_001366902 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 195.167-3 chr10 25277691 25278011 + 0.833333 NA intron (NM_020752, intron 2 of 10) L1MEd|LINE|L1 -101575 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 207.833-30 chr8 25015069 25015591 + 0.833333 NA Intergenic Intergenic -58461 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 180.667-32 chr3 107885402 107885628 + 0.833333 NA intron (NR_015394, intron 1 of 2) intron (NR_015394, intron 1 of 2) 2310 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 237.167-6 chr11 4212703 4213002 + 0.833333 NA Intergenic AluJb|SINE|Alu 25700 NR_047550 100506082 Hs.445705 NR_047550 ENSG00000254480 LINC02749 - long intergenic non-protein coding RNA 2749 ncRNA 198.667-19 chr17 74958283 74958564 + 0.833333 NA exon (NM_030630, exon 11 of 19) exon (NM_030630, exon 11 of 19) -12266 NR_110878 102723641 NR_110878 ENSG00000263586 HID1-AS1 - HID1 antisense RNA 1 ncRNA 211.5-40 chr6 158553327 158553624 + 0.833333 NA intron (NM_020823, intron 1 of 16) MER65-int|LTR|ERV1 17039 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 271.833-7 chr17 48307553 48307948 + 0.833333 NA TTS (NR_131239) TTS (NR_131239) 13403 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 273.167-10 chr3 34834294 34834916 + 0.833333 NA Intergenic Intergenic 559418 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 197.167-38 chr7 70048668 70048991 + 0.833333 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 450354 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 322.334-4 chr15 89813091 89813840 + 0.833333 NA intron (NM_001150, intron 1 of 20) intron (NM_001150, intron 1 of 20) 1387 NM_001150 290 Hs.1239 NM_001150 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl aminopeptidase, membrane protein-coding 168.5-40 chr6 122144323 122144645 + 0.833333 NA Intergenic Intergenic -255067 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 274.5-26 chr7 15307097 15307486 + 0.833333 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 254724 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 188-25 chr2 68018537 68019043 + 0.833333 NA Intergenic L1MEg|LINE|L1 44214 NM_173177 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 181.167-16 chr15 49589312 49589730 + 0.833333 NA intron (NM_001330293, intron 4 of 10) intron (NM_001330293, intron 4 of 10) 31297 NM_001330293 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 169.667-23 chr12 82527396 82527617 + 0.833333 NA Intergenic Intergenic -159400 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 213-19 chr16 74120549 74120958 + 0.833333 NA Intergenic L1MC5a|LINE|L1 94768 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 169.167-27 chr5 96788537 96789027 + 0.833333 NA intron (NM_001198541, intron 10 of 18) intron (NM_001198541, intron 10 of 18) 19163 NM_001040458 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 240.333-8 chr17 76121318 76121667 + 0.833333 NA Intergenic CpG -17705 NM_001013839 23265 Hs.514496 NM_015219 ENSG00000182473 EXOC7 2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|YJL085W exocyst complex component 7 protein-coding 200.167-13 chr17 31150577 31150869 + 0.833333 NA intron (NM_001042492, intron 1 of 57) L1M8|LINE|L1 55746 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 213.667-27 chr2 221837436 221837919 + 0.833333 NA Intergenic Intergenic -263475 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 171-3 chr1 84890693 84891110 + 0.833333 NA intron (NM_012152, intron 1 of 2) intron (NM_012152, intron 1 of 2) 2305 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 335.5-12 chr7 111977990 111978532 + 0.833333 NA intron (NM_001363540, intron 7 of 52) AluJb|SINE|Alu 169756 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 182.333-24 chr5 106236020 106236389 + 0.833333 NA Intergenic Intergenic 774810 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 262-14 chr2 95402441 95403157 + 0.833333 NA promoter-TSS (NM_016044) promoter-TSS (NM_016044) 91 NM_016044 51011 Hs.531247 NM_016044 ENSG00000115042 FAHD2A CGI-105 fumarylacetoacetate hydrolase domain containing 2A protein-coding 296.666-6 chr2 219523703 219524263 + 0.833333 NA intron (NM_018674, intron 1 of 9) AluJo|SINE|Alu 9813 NM_018674 55515 Hs.87469 NM_018674 ENSG00000072182 ASIC4 ACCN4|BNAC4 acid sensing ion channel subunit family member 4 protein-coding 242.333-4 chr1 187476832 187477236 + 0.833333 NA non-coding (NR_132374, exon 3 of 3) non-coding (NR_132374, exon 3 of 3) 33406 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 241.167-16 chr2 42924881 42925359 + 0.833333 NA Intergenic Intergenic 114423 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 289.667-24 chr8 56973155 56973837 + 0.833333 NA intron (NM_017813, intron 3 of 4) Tigger2|DNA|TcMar-Tigger 20371 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 192.833-20 chr2 121736613 121737188 + 0.833333 NA promoter-TSS (NM_032390) promoter-TSS (NM_032390) -25 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 184.167-19 chr2 103838115 103838427 + 0.833333 NA Intergenic Intergenic 570061 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 440.167-5 chr17 39153907 39154554 + 0.833333 NA Intergenic Intergenic -2593 NM_020405 57125 Hs.125036 NM_020405 ENSG00000161381 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 221.667-9 chr11 15101926 15102342 + 0.833333 NA Intergenic MLT1A1|LTR|ERVL-MaLR -10290 NM_001031853 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 210.167-4 chr1 198005382 198005708 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 88173 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 184.5-51 chr8 110845905 110846174 + 0.833333 NA Intergenic Intergenic 181394 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 218 chr1 169554997 169555506 + 0.833333 NA exon (NM_000130, exon 7 of 25) exon (NM_000130, exon 7 of 25) 31280 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 189.667-51 chr7 42031674 42032092 + 0.833333 NA intron (NM_000168, intron 7 of 14) intron (NM_000168, intron 7 of 14) 205326 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 254.5-34 chr8 137104707 137105264 + 0.833333 NA Intergenic Intergenic 308603 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 170.833-23 chr22 28327516 28327737 + 0.833333 NA intron (NM_001145418, intron 2 of 22) Tigger17a|DNA|TcMar-Tigger -132243 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 177.833-2 chr1 42394317 42394792 + 0.833333 NA intron (NM_173642, intron 1 of 4) intron (NM_173642, intron 1 of 4) 13762 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 203-4 chr10 19762339 19762719 + 0.833333 NA Intergenic L1MB8|LINE|L1 -33979 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 179.833-7 chr11 19719443 19719906 + 0.833333 NA intron (NM_182964, intron 1 of 37) MIRb|SINE|MIR -5002 NR_015384 100126784 Hs.64341 NR_015384 LOC100126784 - uncharacterized LOC100126784 ncRNA 184.5-20 chr16 74667127 74667497 + 0.833333 NA promoter-TSS (NM_018124) promoter-TSS (NM_018124) -435 NM_001370537 55159 Hs.567525 NM_018124 ENSG00000168411 RFWD3 FANCW|RNF201 ring finger and WD repeat domain 3 protein-coding 182-3 chr11 63710039 63710484 + 0.833333 NA intron (NM_201429, intron 2 of 7) FLAM_A|SINE|Alu 28761 NR_049751 10313 Hs.743229 NM_006054 ENSG00000133318 RTN3 ASYIP|HAP|NSPL2|NSPLII|RTN3-A1 reticulon 3 protein-coding 285.5-32 chr8 131364690 131365152 + 0.833333 NA Intergenic Intergenic -324012 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 328.5-2 chr11 56147266 56147675 + 0.833333 NA Intergenic L1MA4|LINE|L1 -9752 NM_001004064 81168 Hs.554523 NM_001004064 ENSG00000167822 OR8J3 OR11-173 olfactory receptor family 8 subfamily J member 3 protein-coding 163.333-6 chr10 34422271 34422605 + 0.833333 NA intron (NM_001184791, intron 4 of 20) L1MA8|LINE|L1 392858 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 303.5-12 chr9 83522428 83523059 + 0.833333 NA intron (NM_174938, intron 1 of 13) AluYf1|SINE|Alu 15658 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 196.667-39 chr6 39266185 39266628 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -36931 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 221.5-19 chr4 104422298 104422815 + 0.833333 NA Intergenic Intergenic -68409 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 223.833-10 chr16 77726790 77727085 + 0.833333 NA intron (NM_001243661, intron 2 of 2) MSTA|LTR|ERVL-MaLR 4423 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 227.667-10 chr13 27583509 27584048 + 0.833333 NA intron (NM_153371, intron 1 of 9) L2c|LINE|L2 36751 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 216-51 chrX 19372377 19372836 + 0.833333 NA intron (NM_001001671, intron 22 of 28) intron (NM_001001671, intron 22 of 28) 28679 NM_000284 5160 Hs.530331 NM_000284 ENSG00000131828 PDHA1 PDHA|PDHAD|PDHCE1A|PHE1A pyruvate dehydrogenase E1 alpha 1 subunit protein-coding 192.667-21 chr2 159500357 159500720 + 0.833333 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -114756 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 254-4 chr10 43856483 43857043 + 0.833333 NA Intergenic Intergenic -2648 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 296.333-9 chr4 39437737 39438130 + 0.833333 NA exon (NM_175737, exon 3 of 5) exon (NM_175737, exon 3 of 5) 21015 NM_001024921 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 175.5-54 chr8 59468267 59468553 + 0.833333 NA Intergenic L2a|LINE|L2 349200 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 169.5-30 chr3 169771937 169772160 + 0.833333 NA Intergenic Intergenic -1348 NM_018657 55892 Hs.507025 NM_018657 ENSG00000085274 MYNN OSZF|SBBIZ1|ZBTB31|ZNF902 myoneurin protein-coding 298.5-4 chr10 91408812 91409435 + 0.833333 NA promoter-TSS (NM_001348365) promoter-TSS (NM_001348365) -112 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 197.833-21 chr2 124027792 124028048 + 0.833333 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 2633 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 173-22 chr17 7858193 7858400 + 0.833333 NA promoter-TSS (NM_001320924) promoter-TSS (NM_001320924) 293 NM_001330110 124637 Hs.27475 NM_144607 ENSG00000182224 CYB5D1 - cytochrome b5 domain containing 1 protein-coding 261.333-15 chr5 97112562 97113008 + 0.833333 NA intron (NM_153234, intron 2 of 5) intron (NM_153234, intron 2 of 5) 29826 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 203.333-36 chr3 23028519 23028949 + 0.833333 NA Intergenic Intergenic 173844 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 217.167-34 chrX 134604262 134604773 + 0.833333 NA intron (NM_001316887, intron 2 of 3) Helitron2Na_Mam|RC?|Helitron? 53954 NM_021796 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2B|OOSP2L placenta enriched 1 protein-coding 174.5-4 chr10 102165888 102166274 + 0.833333 NA Intergenic L1ME4b|LINE|L1 13692 NM_004741 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 232-14 chr13 96011848 96012332 + 0.833333 NA intron (NM_020121, intron 5 of 38) L1M5|LINE|L1 41311 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 165.833-10 chr11 69684093 69684301 + 0.833333 NA Intergenic Intergenic -8844 NM_153451 220064 Hs.667996 NM_153451 ENSG00000149716 LTO1 CIAB1|ORAOV1|TAOS1 LTO1 maturation factor of ABCE1 protein-coding 245.333-7 chr13 60596654 60597125 + 0.833333 NA Intergenic Intergenic -76066 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 194-27 chr21 30842553 30842833 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -12934 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 220.167-11 chr12 55190808 55191317 + 0.833333 NA Intergenic L1PA12|LINE|L1 -29963 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 282.5 chr1 84757103 84757480 + 0.833333 NA Intergenic Intergenic -66823 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 206.167-9 chr14 60632094 60632485 + 0.833333 NA Intergenic Intergenic -6927 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 183.5-5 chr11 108085157 108085512 + 0.833333 NA intron (NM_003478, intron 11 of 18) L1MB4|LINE|L1 -36233 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 296.333-15 chr5 142685915 142686407 + 0.833333 NA promoter-TSS (NM_001257209) promoter-TSS (NM_001257209) -71 NM_000800 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 166.667-5 chr10 24790907 24791346 + 0.833333 NA Intergenic Intergenic -67239 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 294.333-15 chr6 41814087 41814469 + 0.833333 NA intron (NM_001286554, intron 1 of 5) intron (NM_001286554, intron 1 of 5) 26835 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 260-29 chr8 142032291 142032859 + 0.833333 NA Intergenic LTR39|LTR|ERV1 -143764 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 163.167-23 chr2 28026731 28026963 + 0.833333 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 30480 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 187.333 chr1 14108758 14109051 + 0.833333 NA Intergenic Intergenic 311069 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 167.5-24 chr21 33062611 33062979 + 0.833333 NA non-coding (NR_104056, exon 3 of 5) non-coding (NR_104056, exon 3 of 5) 4966 NR_104056 101930746 Hs.580934 NR_104056 ENSG00000232539 LINC00945 - long intergenic non-protein coding RNA 945 ncRNA 211-33 chr3 35632879 35633344 + 0.833333 NA Intergenic L1MC|LINE|L1 -6414 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 180.833-27 chr9 88741611 88742016 + 0.833333 NA Intergenic Intergenic 4092 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 188.667-32 chr3 132351915 132352322 + 0.833333 NA intron (NM_001292037, intron 7 of 8) MIRb|SINE|MIR 34711 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 189.833-21 chr8 104329800 104330030 + 0.833333 NA Intergenic Intergenic -9881 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 189.5-41 chr8 122689709 122690101 + 0.833333 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 4201 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 192.5-46 chr7 13258442 13258868 + 0.833333 NA Intergenic Intergenic 571022 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 225.333-33 chr8 8490369 8490664 + 0.833333 NA Intergenic Intergenic -104077 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 191.333-32 chr3 190810691 190811136 + 0.833333 NA Intergenic Intergenic 51781 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 179.5-47 chr8 16327927 16328296 + 0.833333 NA Intergenic Intergenic -135320 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 244.333-8 chr12 6937955 6938452 + 0.833333 NA intron (NM_001940, intron 6 of 9) intron (NM_001940, intron 6 of 9) -5235 NM_001301836 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 192.333-24 chr18 11843638 11844016 + 0.833333 NA intron (NM_001369387, intron 5 of 11) AluSp|SINE|Alu -7586 NM_020412 57132 Hs.656244 NM_020412 ENSG00000255112 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 301-6 chr12 23952744 23953404 + 0.833333 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -2042 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 178-10 chr14 66807748 66808046 + 0.833333 NA intron (NM_001024218, intron 3 of 21) L1ME3A|LINE|L1 300490 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 174.5-5 chr11 23448029 23448415 + 0.833333 NA Intergenic Intergenic -29032 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 195.5-34 chr7 105485794 105486110 + 0.833333 NA intron (NM_001318164, intron 7 of 15) AluSx3|SINE|Alu 22568 NM_001318163 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 IDDABS pseudouridine synthase 7 protein-coding 214.833-3 chr1 115060326 115060614 + 0.833333 NA exon (NM_001308316, exon 4 of 7) exon (NM_001308316, exon 4 of 7) 26524 NM_001277991 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 201.667-51 chr7 47993245 47993806 + 0.833333 NA intron (NM_001030019, intron 8 of 9) L1MB8|LINE|L1 -13910 NM_001363683 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 263.5-29 chr8 121816477 121816852 + 0.833333 NA Intergenic Intergenic -175224 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 207.167-12 chr20 36474811 36475210 + 0.833333 NA intron (NM_183006, intron 1 of 6) intron (NM_183006, intron 1 of 6) 13215 NM_183006 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 231.333-23 chr3 111695768 111696193 + 0.833333 NA intron (NM_001185106, intron 1 of 4) intron (NM_001185106, intron 1 of 4) -18547 NR_046733 100874115 Hs.626740 NR_046733 PLCXD2-AS1 - PLCXD2 antisense RNA 1 ncRNA 190.333-19 chr16 62307386 62307887 + 0.833333 NA Intergenic LTR16E1|LTR|ERVL -271198 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 215.5-29 chr8 92659054 92659591 + 0.833333 NA Intergenic Intergenic -3828 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 187-40 chr6 144978624 144978937 + 0.833333 NA Intergenic Arthur1|DNA|hAT-Tip100 573125 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 226-29 chr21 32393147 32393482 + 0.833333 NA promoter-TSS (NM_014825) promoter-TSS (NM_014825) 181 NR_026845 84996 Hs.58149 NM_032910 ENSG00000256073 URB1-AS1 C21orf119|PRED84 URB1 antisense RNA 1 (head to head) ncRNA 211.833-12 chr2 109736507 109737022 + 0.833333 NA Intergenic Intergenic -55994 NM_001037866 729540 Hs.535589 NM_001037866 ENSG00000183054 RGPD6 RGP6|RGPD7|RanBP2L1|RanBP2L2 RANBP2 like and GRIP domain containing 6 protein-coding 177.167-11 chr14 80633047 80633479 + 0.833333 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 308475 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 183-37 chr5 86630712 86631184 + 0.833333 NA Intergenic L2a|LINE|L2 10442 NR_145802 109623460 NR_037402 SNORD138 MIR3607|mir-3607 small nucleolar RNA, C/D box 138 snoRNA 172.667-21 chr15 99343559 99343794 + 0.833333 NA intron (NR_135755, intron 5 of 8) intron (NR_135755, intron 5 of 8) 86151 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 197.667-49 chr9 133040523 133041002 + 0.833333 NA intron (NM_001286709, intron 1 of 8) intron (NM_001286709, intron 1 of 8) 9765 NM_012087 9328 Hs.495417 NM_012087 ENSG00000148308 GTF3C5 TFIIIC63|TFIIICepsilon|TFiiiC2-63 general transcription factor IIIC subunit 5 protein-coding 165.167-13 chr14 81096267 81096514 + 0.833333 NA intron (NM_001142626, intron 6 of 8) MARNA|DNA|TcMar-Mariner 106444 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 218.167-4 chr11 16876595 16877031 + 0.833333 NA intron (NM_001329630, intron 3 of 26) intron (NM_001329630, intron 3 of 26) 49209 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 172-56 chrX 54044438 54044782 + 0.833333 NA promoter-TSS (NM_001184897) promoter-TSS (NM_001184897) -137 NM_015107 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 209.667-43 chr9 22470728 22471023 + 0.833333 NA Intergenic A-rich|Low_complexity|Low_complexity 24051 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 290-2 chr10 60594360 60594886 + 0.833333 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -21667 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 181.833-19 chr4 65046786 65047043 + 0.833333 NA Intergenic Intergenic -42414 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 169.5-22 chr2 199176301 199176577 + 0.833333 NA Intergenic L1ME2|LINE|L1 281500 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 278.167-23 chr5 76848493 76848895 + 0.833333 NA Intergenic AluJb|SINE|Alu -1320 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 256.167-20 chr6 46926648 46927175 + 0.833333 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) -4973 NM_001098518 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 229.833-11 chr16 72532241 72532549 + 0.833333 NA intron (NR_159372, intron 3 of 7) L1MB8|LINE|L1 132575 NR_159370 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 223-3 chr10 6666585 6666882 + 0.833333 NA Intergenic Intergenic 31663 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 163.667-7 chr10 111875311 111875569 + 0.833333 NA Intergenic Intergenic 308325 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 295-19 chr4 72285242 72285645 + 0.833333 NA intron (NM_014243, intron 21 of 21) intron (NM_014243, intron 21 of 21) 246311 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 216.167-24 chr7 5000560 5000824 + 0.833333 NA Intergenic AluJr|SINE|Alu 26707 NR_023384 441191 Hs.520636 NR_015449 ENSG00000196204 RNF216P1 RNF216L|hCG2040556 ring finger protein 216 pseudogene 1 pseudo 281.667-4 chr1 235525735 235526124 + 0.833333 NA Intergenic Intergenic -21477 NM_152490 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 315.334 chr10 74107345 74108050 + 0.833333 NA intron (NM_014000, intron 17 of 21) intron (NM_014000, intron 17 of 21) 43131 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 187.833-14 chr2 59951850 59952282 + 0.833333 NA Intergenic Intergenic 430970 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 279.5-12 chr20 48128534 48129096 + 0.833333 NA Intergenic Intergenic -138698 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 178-3 chr1 201267597 201267981 + 0.833333 NA Intergenic Intergenic -15663 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 170.167-2 chr1 67273584 67274008 + 0.833333 NA Intergenic MLT1O|LTR|ERVL-MaLR -33568 NM_001559 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 227.333-32 chr7 46216080 46216523 + 0.833333 NA Intergenic Intergenic -295029 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 366.333 chr4 40719703 40720201 + 0.833333 NA Intergenic Intergenic -30003 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 170.167-8 chr11 3824626 3824861 + 0.833333 NA non-coding (NR_144428, exon 6 of 7) non-coding (NR_144428, exon 6 of 7) 16183 NR_144428 27315 Hs.133968 NM_014489 ENSG00000148985 PGAP2 CWH43-N|FRAG1|HPMRS3|MRT17|MRT21 post-GPI attachment to proteins 2 protein-coding 199.5-16 chr15 97457926 97458315 + 0.833333 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 63691 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 245.833-16 chr18 12859348 12859752 + 0.833333 NA intron (NM_080423, intron 1 of 8) MIRb|SINE|MIR -18588 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 216.167-16 chr14 56919655 56920031 + 0.833333 NA non-coding (NR_146411, exon 3 of 3) non-coding (NR_146411, exon 3 of 3) 106685 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 227.167-21 chr4 59484953 59485431 + 0.833333 NA Intergenic L1M4|LINE|L1 471619 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 194.5-21 chr14 70555048 70555533 + 0.833333 NA Intergenic L1MA9|LINE|L1 -20286 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 199.5-38 chr5 137593167 137593596 + 0.833333 NA Intergenic Intergenic 54268 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 266.5-20 chr5 34412295 34412891 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 -167869 NR_146599 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 264-23 chr3 188448080 188448459 + 0.833333 NA intron (NM_001167672, intron 2 of 9) MIRb|SINE|MIR 120397 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 175.833-18 chr17 10328882 10329327 + 0.833333 NA intron (NM_003802, intron 21 of 40) intron (NM_003802, intron 21 of 40) 43902 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 193.5-29 chr20 23863980 23864357 + 0.833333 NA Intergenic L1P4|LINE|L1 15580 NM_001900 1473 Hs.121489 NM_001900 ENSG00000170367 CST5 - cystatin D protein-coding 303.833-8 chr2 192585907 192586485 + 0.833333 NA Intergenic Intergenic -163649 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 196.833-15 chr2 51565908 51566304 + 0.833333 NA intron (NR_135237, intron 5 of 10) L1MA6|LINE|L1 533505 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 242.333-28 chr8 138122793 138123344 + 0.833333 NA Intergenic Intergenic -39523 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 183.5-31 chr3 191151345 191151737 + 0.833333 NA Intergenic L1M5|LINE|L1 -47700 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 198.333-16 chr11 115699967 115700366 + 0.833333 NA Intergenic Intergenic 34596 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 228.833-6 chr14 66812574 66812965 + 0.833333 NA intron (NM_001024218, intron 3 of 21) intron (NM_001024218, intron 3 of 21) 305362 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 254.667-11 chr17 27544733 27545064 + 0.833333 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 72934 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 244.834-3 chr5 67902608 67903249 + 0.833333 NA Intergenic Tigger6a|DNA|TcMar-Tigger 109715 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 229.5-16 chr2 44647158 44647483 + 0.833333 NA intron (NM_024766, intron 3 of 10) Tigger6a|DNA|TcMar-Tigger 285373 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 163.5-43 chr6 168355899 168356102 + 0.833333 NA Intergenic Intergenic -36223 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 223.833-13 chr2 17401274 17401588 + 0.833333 NA Intergenic Intergenic 117009 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 182.833-10 chr11 34057334 34057656 + 0.833333 NA intron (NM_005898, intron 2 of 18) intron (NM_005898, intron 2 of 18) 5764 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 314.667-6 chr19 49453174 49453649 + 0.833333 NA exon (NM_153329, exon 1 of 17) exon (NM_153329, exon 1 of 17) 186 NM_153329 126133 Hs.719998 NM_153329 ENSG00000161618 ALDH16A1 - aldehyde dehydrogenase 16 family member A1 protein-coding 269.667-4 chr1 213466315 213466925 + 0.833333 NA Intergenic Intergenic 415379 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 168.5-47 chr7 138152081 138152367 + 0.833333 NA Intergenic AluJo|SINE|Alu 28466 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 182.333-3 chr10 43078874 43079121 + 0.833333 NA intron (NM_020630, intron 1 of 18) intron (NM_020630, intron 1 of 18) 1928 NM_020975 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 192.167-12 chr12 6749458 6749865 + 0.833333 NA intron (NR_026581, intron 7 of 8) AluSg|SINE|Alu 3255 NM_005439 8079 Hs.524214 NM_005439 ENSG00000089693 MLF2 NTN4 myeloid leukemia factor 2 protein-coding 211-35 chr4 31369301 31369748 + 0.833333 NA Intergenic Intergenic -137020 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 199.167-13 chr2 190109730 190110198 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -27813 NM_001042521 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 238-29 chr5 55763365 55764011 + 0.833333 NA intron (NM_024415, intron 5 of 21) intron (NM_024415, intron 5 of 21) -3197 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 169-42 chr5 87854428 87854659 + 0.833333 NA Intergenic L1MB8|LINE|L1 192501 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 204.333-29 chr3 134476368 134476633 + 0.833333 NA Intergenic LTR16A1|LTR|ERVL -9224 NM_001042384 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 207.667-10 chr12 68329742 68330154 + 0.833333 NA intron (NM_001205029, intron 2 of 2) MIRb|SINE|MIR 2414 NM_001368282 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 210.167-8 chr10 57080809 57081369 + 0.833333 NA Intergenic Intergenic 223470 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 280-25 chrX 82676254 82676909 + 0.833333 NA Intergenic LTR23|LTR|ERV1 -831709 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 236.167-11 chr2 204257775 204258283 + 0.833333 NA Intergenic Intergenic -287446 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 227.334-12 chr2 44866636 44867417 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR 71862 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 176.167-33 chr5 145101259 145101653 + 0.833333 NA Intergenic Intergenic 733886 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 185-36 chr4 47145365 47145717 + 0.833333 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 113974 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 165.5-15 chr15 33247965 33248281 + 0.833333 NA promoter-TSS (NR_046005) promoter-TSS (NR_046005) -568 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 207-17 chr2 117097687 117098170 + 0.833333 NA Intergenic Intergenic -716763 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 212-18 chr12 42757553 42757863 + 0.833333 NA Intergenic Intergenic 65492 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 211-4 chr10 58797058 58797419 + 0.833333 NA intron (NM_001080512, intron 10 of 20) intron (NM_001080512, intron 10 of 20) 82223 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 221.167-11 chr13 78693131 78693396 + 0.833333 NA Intergenic Intergenic -34108 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 193.5-24 chr2 60714859 60715104 + 0.833333 NA Intergenic AluSx1|SINE|Alu -41287 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 188.333-14 chr14 47269892 47270216 + 0.833333 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 73192 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 276 chr1 54808207 54808661 + 0.833333 NA intron (NM_001110533, intron 4 of 9) L2a|LINE|L2 2371 NM_152607 163747 Hs.376018 NM_152607 ENSG00000162398 LEXM C1orf177|LEM lymphocyte expansion molecule protein-coding 199.833-12 chr15 23728194 23728474 + 0.833333 NA Intergenic Intergenic -41029 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 204.833-15 chr2 96787752 96788226 + 0.833333 NA intron (NM_020184, intron 1 of 6) AluSz|SINE|Alu -10289 NR_036074 100422928 NR_036074 ENSG00000264157 MIR3127 mir-3127 microRNA 3127 ncRNA 274.333-11 chr17 40096813 40097455 + 0.833333 NA exon (NM_021724, exon 2 of 8) exon (NM_021724, exon 2 of 8) 3455 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 212.167-12 chr4 21452679 21453345 + 0.833333 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 11746 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 253.667-22 chr2 19511500 19511885 + 0.833333 NA Intergenic L1PB1|LINE|L1 -153069 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 212-10 chr10 56460331 56460786 + 0.833333 NA Intergenic Intergenic -99285 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 229.833-8 chr12 127040715 127041234 + 0.833333 NA intron (NR_104646, intron 1 of 6) intron (NR_104646, intron 1 of 6) 19423 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 177.333-6 chr12 4032978 4033386 + 0.833333 NA Intergenic MIR3|SINE|MIR -159734 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 199.5-27 chr2 105833102 105833409 + 0.833333 NA intron (NM_003581, intron 2 of 4) AluSx|SINE|Alu -18592 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 256-5 chr11 33608991 33609440 + 0.833333 NA intron (NM_012194, intron 14 of 20) intron (NM_012194, intron 14 of 20) 91525 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 229.833-10 chr15 83935778 83936118 + 0.833333 NA intron (NM_207517, intron 17 of 29) L1MEd|LINE|L1 -144239 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 262.167-9 chr2 102890971 102891391 + 0.833333 NA intron (NR_135562, intron 3 of 3) intron (NR_135562, intron 3 of 3) 4541 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 164.5-22 chr19 11535991 11536278 + 0.833333 NA Intergenic CpG -2717 NM_001308341 1264 Hs.465929 NM_001299 ENSG00000130176 CNN1 HEL-S-14|SMCC|Sm-Calp calponin 1 protein-coding 201.167-24 chr5 8140968 8141446 + 0.833333 NA Intergenic L1M5|LINE|L1 272059 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 171.833-9 chr17 3050983 3051189 + 0.833333 NA Intergenic Intergenic 12521 NM_014566 8386 Hs.553508 NM_014566 ENSG00000262628 OR1D5 C17orf2|OR17-2|OR17-30|OR17-31|OR1D4 olfactory receptor family 1 subfamily D member 5 protein-coding 219.333-22 chr2 41830822 41831278 + 0.833333 NA Intergenic Intergenic -46505 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 191.667-46 chr8 77224095 77224576 + 0.833333 NA Intergenic L1PA10|LINE|L1 -223291 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 276.333-14 chr8 36549625 36550084 + 0.833333 NA Intergenic Intergenic -234520 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 296.167-16 chr6 70110392 70110782 + 0.833333 NA intron (NM_001858, intron 16 of 50) intron (NM_001858, intron 16 of 50) 172610 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 196.167-9 chr14 59601875 59602291 + 0.833333 NA intron (NM_021136, intron 8 of 8) intron (NM_021136, intron 8 of 8) 8056 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 178.5-35 chr6 166112685 166113018 + 0.833333 NA Intergenic Intergenic 15131 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 264.5-21 chr5 24097064 24097480 + 0.833333 NA intron (NR_131245, intron 4 of 4) L1MEf|LINE|L1 145924 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 228.5-35 chr8 134975439 134975899 + 0.833333 NA Intergenic Intergenic 125734 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 190.5-26 chr20 17296008 17296249 + 0.833333 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 69088 NM_001201529 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 219.333-10 chr11 75032739 75033256 + 0.833333 NA Intergenic Intergenic 44064 NM_001367866 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 268.5-18 chr2 64307781 64308154 + 0.833333 NA Intergenic L2b|LINE|L2 -32792 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 164-27 chr19 18361883 18362241 + 0.833333 NA intron (NM_001329471, intron 4 of 4) L1ME3G|LINE|L1 21464 NM_017712 54858 Hs.131776 NM_017712 ENSG00000130517 PGPEP1 PAP-I|PGI|PGP|PGP-I|PGPI|Pcp pyroglutamyl-peptidase I protein-coding 228.667-10 chr12 106942948 106943281 + 0.833333 NA Intergenic MER4B-int|LTR|ERV1 -12608 NM_001319661 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 239.167-30 chr8 6647157 6647483 + 0.833333 NA 3' UTR (NM_001322042, exon 15 of 15) 3' UTR (NM_001322042, exon 15 of 15) -25100 NR_107022 102465861 NR_107022 ENSG00000276580 MIR8055 hsa-mir-8055 microRNA 8055 ncRNA 184-15 chr11 84409181 84409465 + 0.833333 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -91984 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 199.667-14 chr15 56284658 56284965 + 0.833333 NA Intergenic Intergenic -39729 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 186-4 chr10 110571842 110572357 + 0.833333 NA intron (NM_005445, intron 2 of 28) L1MC4|LINE|L1 4408 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 228.5-14 chr2 119148279 119148641 + 0.833333 NA Intergenic MIRb|SINE|MIR 10291 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 172.667-26 chr19 38618428 38618789 + 0.833333 NA promoter-TSS (NM_001308393) promoter-TSS (NM_001308393) -580 NM_001308393 27335 Hs.314359 NM_013234 ENSG00000178982 EIF3K ARG134|EIF3-p28|EIF3S12|HSPC029|M9|MSTP001|PLAC-24|PLAC24|PRO1474|PTD001 eukaryotic translation initiation factor 3 subunit K protein-coding 220.667-29 chr5 64208203 64208610 + 0.833333 NA intron (NM_001113561, intron 2 of 7) intron (NM_001113561, intron 2 of 7) 42563 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 211.167-22 chr6 142207198 142207570 + 0.833333 NA intron (NM_016485, intron 7 of 7) L1MA4|LINE|L1 60121 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 184.5-21 chr17 79689852 79690233 + 0.833333 NA Intergenic Intergenic 17207 NR_039893 100616170 NR_039893 ENSG00000266665 MIR4739 mir-4739 microRNA 4739 ncRNA 183.167-24 chr4 10064267 10064549 + 0.833333 NA Intergenic Intergenic 14284 NR_036090 100423011 NR_036090 ENSG00000264931 MIR3138 mir-3138 microRNA 3138 ncRNA 202.667-39 chr8 67152328 67152621 + 0.833333 NA intron (NM_024790, intron 16 of 28) intron (NM_024790, intron 16 of 28) 68626 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 319.333-2 chr1 201444037 201444674 + 0.833333 NA Intergenic AluSq2|SINE|Alu -22625 NM_003281 7135 Hs.320890 NM_003281 ENSG00000159173 TNNI1 SSTNI|TNN1 troponin I1, slow skeletal type protein-coding 270.166-8 chr9 9621095 9621636 + 0.833333 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -178027 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 168.167-39 chr9 105425911 105426372 + 0.833333 NA intron (NM_001330731, intron 15 of 15) intron (NM_001330731, intron 15 of 15) -21893 NM_001287191 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 279.333-11 chr2 71130036 71130630 + 0.833333 NA promoter-TSS (NM_005791) promoter-TSS (NM_005791) -104 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 195.833-19 chr20 62990454 62990778 + 0.833333 NA Intergenic Intergenic 16348 NM_080606 128408 Hs.551230 NM_080606 ENSG00000125533 BHLHE23 BETA4|BHLHB4|Beta3b|bA305P22.3 basic helix-loop-helix family member e23 protein-coding 209.5-25 chr3 63022280 63022767 + 0.833333 NA Intergenic Intergenic -80165 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 181.667-6 chr10 17792131 17792360 + 0.833333 NA intron (NM_001098844, intron 3 of 3) AluSz|SINE|Alu -17103 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 184-13 chr11 36670135 36670925 + 0.833333 NA Intergenic HUERS-P3b-int|LTR|ERV1 -72251 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 172.167-8 chr14 79836400 79836755 + 0.833333 NA intron (NM_138970, intron 5 of 5) intron (NM_138970, intron 5 of 5) -374842 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 200.333-15 chr15 75536423 75536855 + 0.833333 NA intron (NM_002833, intron 1 of 12) L2c|LINE|L2 42676 NM_002833 5780 Hs.445775 NM_002833 ENSG00000169410 PTPN9 MEG2|PTPMEG2 protein tyrosine phosphatase non-receptor type 9 protein-coding 232-7 chr10 117213581 117214075 + 0.833333 NA Intergenic AluSx|SINE|Alu 16339 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 182.167-28 chr6 134684375 134684793 + 0.833333 NA Intergenic Intergenic -144579 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 172-47 chr6 154302044 154302327 + 0.833333 NA intron (NM_015553, intron 1 of 11) intron (NM_015553, intron 1 of 11) 27896 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 206.5-47 chr5 116099000 116099374 + 0.833333 NA intron (NM_001308080, intron 4 of 6) L1MA9|LINE|L1 13725 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 307.833-7 chr4 60983050 60983497 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger 60654 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 179.167-26 chr8 78504281 78504522 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -11939 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 175-28 chr2 108327551 108327852 + 0.833333 NA non-coding (NR_037191, exon 2 of 4) non-coding (NR_037191, exon 2 of 4) 5463 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 168.667-13 chr13 23202202 23202614 + 0.833333 NA intron (NM_000231, intron 1 of 7) L2a|LINE|L2 21487 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 163.5-20 chr17 63403348 63403703 + 0.833333 NA intron (NM_025185, intron 18 of 25) intron (NM_025185, intron 18 of 25) 36742 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 178.833-35 chr6 149546398 149546650 + 0.833333 NA promoter-TSS (NM_139126) promoter-TSS (NM_139126) -481 NM_139126 85313 Hs.744238 NM_139126 ENSG00000131013 PPIL4 HDCME13P peptidylprolyl isomerase like 4 protein-coding 232.333-10 chr17 56052774 56053177 + 0.833333 NA Intergenic Intergenic -100500 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 170-48 chr6 117165552 117165882 + 0.833333 NA Intergenic Intergenic -99841 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 212 chr1 91268725 91269006 + 0.833333 NA intron (NM_001017975, intron 34 of 38) MER63C|DNA|hAT-Blackjack 135972 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 290-18 chr8 72041323 72041745 + 0.833333 NA intron (NM_007332, intron 17 of 26) L1MB2|LINE|L1 34050 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 176.167-18 chr16 27119419 27119639 + 0.833333 NA Intergenic L1MA9|LINE|L1 52602 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 173.833-18 chr15 61195711 61196205 + 0.833333 NA intron (NM_134261, intron 1 of 10) MIRb|SINE|MIR 33344 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 197.333-19 chr2 201794861 201795155 + 0.833333 NA Intergenic AluSx1|SINE|Alu -11421 NM_139158 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 220.333-13 chr19 56424554 56425004 + 0.833333 NA 3' UTR (NM_001159861, exon 5 of 5) 3' UTR (NM_001159861, exon 5 of 5) 20447 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 238.667-22 chr6 43454121 43454640 + 0.833333 NA intron (NM_001286655, intron 3 of 5) intron (NM_001286655, intron 3 of 5) 1168 NM_001286656 65989 Hs.337251 NM_023932 ENSG00000171462 DLK2 DLK-2|EGFL9 delta like non-canonical Notch ligand 2 protein-coding 180.667-34 chr4 93569700 93569970 + 0.833333 NA intron (NM_001286838, intron 12 of 14) L2a|LINE|L2 -258918 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 212.667-4 chr11 92123640 92123992 + 0.833333 NA Intergenic Intergenic -101218 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 294.167-13 chr6 160767529 160768205 + 0.833333 NA Intergenic Intergenic 65674 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 185.667-16 chr12 62579989 62580266 + 0.833333 NA intron (NM_001278469, intron 31 of 35) intron (NM_001278469, intron 31 of 35) 23307 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 169.333-12 chr10 77221110 77221363 + 0.833333 NA intron (NM_001322838, intron 3 of 29) intron (NM_001322838, intron 3 of 29) 80405 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 166.167-16 chr16 76986271 76986610 + 0.833333 NA Intergenic MER51A|LTR|ERV1 117504 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 252.667-11 chr16 84188801 84189136 + 0.833333 NA Intergenic AluJb|SINE|Alu -1898 NM_001243157 9013 Hs.153022 NM_005679 ENSG00000103168 TAF1C MGC:39976|SL1|TAFI110|TAFI95 TATA-box binding protein associated factor, RNA polymerase I subunit C protein-coding 191.667-20 chr19 9819513 9819829 + 0.833333 NA promoter-TSS (NM_017703) promoter-TSS (NM_017703) -592 NM_001316938 54850 Hs.12439 NM_017703 ENSG00000127452 FBXL12 Fbl12 F-box and leucine rich repeat protein 12 protein-coding 181-27 chr22 26440721 26441050 + 0.833333 NA intron (NM_020437, intron 2 of 3) intron (NM_020437, intron 2 of 3) 11625 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 236.333-33 chr8 134157234 134157743 + 0.833333 NA Intergenic AluJb|SINE|Alu 270992 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 204.667-34 chr5 71912399 71912679 + 0.833333 NA Intergenic L1ME1|LINE|L1 193264 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 177.167-33 chr9 35223885 35224161 + 0.833333 NA intron (NM_006377, intron 1 of 38) L1MA4A|LINE|L1 62014 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 178.333-42 chr9 34207727 34207966 + 0.833333 NA intron (NM_001171203, intron 2 of 7) intron (NM_001171203, intron 2 of 7) 28803 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 243-9 chr2 76960965 76961388 + 0.833333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -24789 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 188.167-23 chr3 118766869 118767111 + 0.833333 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 43843 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 206.167-2 chr1 171189894 171190381 + 0.833333 NA intron (NM_001460, intron 2 of 8) MamRep434|DNA|TcMar-Tigger 4837 NM_001460 2327 Hs.144912 NM_001460 ENSG00000094963 FMO2 FMO1B1 flavin containing dimethylaniline monoxygenase 2 protein-coding 218.833-9 chr16 75000182 75000677 + 0.833333 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 1405 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 233.667-31 chr6 88820351 88820703 + 0.833333 NA intron (NM_003800, intron 11 of 15) L1MC|LINE|L1 143091 NM_001286428 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 242.833-10 chr19 37260373 37260741 + 0.833333 NA intron (NR_110718, intron 6 of 7) intron (NR_110718, intron 6 of 7) 8453 NR_029390 284412 Hs.635932 NR_029390 LOC284412 - uncharacterized LOC284412 ncRNA 213.833-13 chr2 221969361 221969878 + 0.833333 NA Intergenic Intergenic -328528 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 221.333-33 chr9 95750672 95751028 + 0.833333 NA Intergenic Intergenic -124841 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 219-14 chr17 73374685 73375061 + 0.833333 NA intron (NM_001144952, intron 36 of 44) L2a|LINE|L2 -62872 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 185.5-41 chrX 97685559 97685963 + 0.833333 NA Intergenic Intergenic -121226 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 287.333-11 chr3 102408843 102409338 + 0.833333 NA Intergenic MSTD|LTR|ERVL-MaLR -25925 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 261.167-3 chr11 42526625 42526987 + 0.833333 NA Intergenic Intergenic -273116 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 249.333-16 chr17 60871087 60871729 + 0.833333 NA intron (NM_001330413, intron 8 of 25) AluJb|SINE|Alu 193557 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 231.333-24 chr3 117107861 117108424 + 0.833333 NA Intergenic L2|LINE|L2 186711 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 298.167-16 chr9 87090959 87091769 + 0.833333 NA Intergenic LTR102_Mam|LTR|ERVL -6139 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 273-15 chr20 18970247 18970744 + 0.833333 NA Intergenic Intergenic -140292 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 163.333-42 chr3 190384445 190384643 + 0.833333 NA Intergenic Intergenic -3328 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 205.833-21 chr3 30751529 30751949 + 0.833333 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 142922 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 227.333-41 chrX 103533363 103534030 + 0.833333 NA intron (NR_131237, intron 4 of 5) intron (NR_131237, intron 4 of 5) -14207 NM_080879 142684 Hs.706904 NM_080879 ENSG00000172476 RAB40A RAR2|RAR2A RAB40A, member RAS oncogene family protein-coding 209.5-32 chr6 55490191 55490583 + 0.833333 NA intron (NR_109869, intron 3 of 4) A-rich|Low_complexity|Low_complexity 88827 NM_001287746 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 171.333-25 chr2 133536022 133536351 + 0.833333 NA intron (NM_207481, intron 2 of 17) L1PB4|LINE|L1 32277 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 174.667-7 chr1 212605936 212606291 + 0.833333 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) -2648 NM_001206484 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 234.833-9 chr14 60646863 60647200 + 0.833333 NA intron (NM_005982, intron 1 of 1) intron (NM_005982, intron 1 of 1) -1617 NR_162089 113218481 NR_162089 MIR9718 - microRNA 9718 ncRNA 298.833-11 chr8 118345137 118345689 + 0.833333 NA intron (NM_001363274, intron 4 of 4) intron (NM_001363274, intron 4 of 4) -233594 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 178.667-15 chr16 77785150 77785509 + 0.833333 NA Intergenic Intergenic -3235 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 183.5-6 chr11 130847548 130847887 + 0.833333 NA intron (NR_125383, intron 3 of 5) MER44C|DNA|TcMar-Tigger 14393 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 277.5-19 chr7 16915704 16916339 + 0.833333 NA Intergenic MER70B|LTR|ERVL -34038 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 331.667-9 chr3 48101174 48101796 + 0.833333 NA Intergenic AluSx1|SINE|Alu -12637 NM_001134364 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 172.333-3 chr1 70169978 70170288 + 0.833333 NA intron (NM_017768, intron 9 of 14) L1M4b|LINE|L1 35446 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 205.333-33 chr3 19435687 19436205 + 0.833333 NA intron (NM_144633, intron 7 of 15) intron (NM_144633, intron 7 of 15) -121015 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 214.5-37 chr9 128725042 128725445 + 0.833333 NA intron (NR_046240, intron 1 of 1) intron (NR_046240, intron 1 of 1) 781 NR_046240 100506100 Hs.62946 NR_046240 ENSG00000223478 LOC100506100 - uncharacterized LOC100506100 ncRNA 271.667-2 chr1 179644060 179644669 + 0.833333 NA intron (NM_001199091, intron 11 of 16) L1M4a1|LINE|L1 38137 NM_001199092 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 200.5-44 chrX 97864807 97865055 + 0.833333 NA Intergenic Intergenic -300396 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 367.333-4 chr2 61486722 61487262 + 0.833333 NA intron (NM_003400, intron 19 of 24) AluSx|SINE|Alu -15905 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 183.167-16 chr2 9825085 9825425 + 0.833333 NA Intergenic Intergenic -18187 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 183.167-17 chr2 56528486 56529051 + 0.833333 NA Intergenic Intergenic -342998 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 180-56 chr7 5570255 5570602 + 0.833333 NA Intergenic CpG -22388 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 215.5-13 chr4 44631089 44631522 + 0.833333 NA intron (NM_182592, intron 3 of 5) intron (NM_182592, intron 3 of 5) 20336 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 225.833-11 chr17 50650907 50651397 + 0.833333 NA intron (NM_003786, intron 1 of 30) MER92-int|LTR|ERV1 16271 NM_001144070 8714 Hs.463421 NM_003786 ENSG00000108846 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP binding cassette subfamily C member 3 protein-coding 262.5-8 chr12 59452152 59452705 + 0.833333 NA Intergenic Intergenic -143601 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 228.167-14 chr18 76250523 76250993 + 0.833333 NA Intergenic Intergenic 41248 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 243.167-12 chr5 107358306 107358725 + 0.833333 NA Intergenic Intergenic 312422 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 212.667-29 chr22 30463878 30464239 + 0.833333 NA intron (NM_174975, intron 8 of 11) L1ME4a|LINE|L1 7989 NM_174975 266629 Hs.505601 NM_174975 ENSG00000100012 SEC14L3 TAP2 SEC14 like lipid binding 3 protein-coding 280.833-6 chr16 2752252 2752632 + 0.833333 NA promoter-TSS (NM_016333) promoter-TSS (NM_016333) 158 NR_027275 100128788 Hs.311208 NR_027274 ENSG00000205913 SRRM2-AS1 - SRRM2 antisense RNA 1 ncRNA 223.833-6 chr14 71224828 71225182 + 0.833333 NA Intergenic AluJr|SINE|Alu -95471 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 202.667-24 chr2 236376393 236376772 + 0.833333 NA intron (NR_073043, intron 13 of 19) intron (NR_073043, intron 13 of 19) -112237 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 185.333-42 chr6 55046205 55046571 + 0.833333 NA Intergenic Intergenic -60072 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 165.5-3 chr1 235998200 235998551 + 0.833333 NA intron (NM_002508, intron 12 of 19) intron (NM_002508, intron 12 of 19) 66715 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 182.5-4 chr10 100239567 100239892 + 0.833333 NA intron (NM_001303404, intron 10 of 12) intron (NM_001303404, intron 10 of 12) -2427 NR_002954 677800 Hs.662165 NR_002954 ENSG00000212464 SNORA12 U108 small nucleolar RNA, H/ACA box 12 snoRNA 264.167-22 chr8 102222608 102223041 + 0.833333 NA intron (NM_001172477, intron 5 of 8) Charlie1b|DNA|hAT-Charlie 16007 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 265-24 chr6 127327182 127327558 + 0.833333 NA intron (NM_001105545, intron 1 of 3) intron (NM_001105545, intron 1 of 3) 15037 NM_001139510 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 220.167-10 chr12 46430874 46431280 + 0.833333 NA intron (NR_125381, intron 2 of 2) intron (NR_125381, intron 2 of 2) 46970 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 229.167-6 chr1 210949578 210949904 + 0.833333 NA intron (NM_002238, intron 6 of 10) intron (NM_002238, intron 6 of 10) 183633 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 185.667-44 chr8 93740555 93740995 + 0.833333 NA TTS (NR_027259) TTS (NR_027259) 234 NM_203390 389677 Hs.606916 NM_203390 ENSG00000183808 RBM12B MGC:33837 RNA binding motif protein 12B protein-coding 166.333-35 chr20 37224531 37224807 + 0.833333 NA intron (NM_001135771, intron 9 of 16) intron (NM_001135771, intron 9 of 16) 32239 NM_021081 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 312.667-22 chr7 116249619 116250144 + 0.833333 NA intron (NM_015641, intron 3 of 6) intron (NM_015641, intron 3 of 6) 26928 NM_152829 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 266.5-15 chr2 151726178 151726767 + 0.833333 NA intron (NM_001271208, intron 5 of 182) intron (NM_001271208, intron 5 of 182) 8004 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 165.5 chr1 46719120 46719363 + 0.833333 NA promoter-TSS (NM_014774) promoter-TSS (NM_014774) -127 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 234.333-21 chr20 54929165 54929612 + 0.833333 NA Intergenic Intergenic 453795 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 214.833-9 chr18 45014018 45014467 + 0.833333 NA intron (NM_015559, intron 4 of 5) MamSINE1|SINE|tRNA-RTE -44076 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 197.167-7 chr12 14802183 14802531 + 0.833333 NA intron (NM_016312, intron 1 of 11) intron (NM_016312, intron 1 of 11) 1121 NM_016312 51729 Hs.655138 NM_016312 ENSG00000084463 WBP11 NPWBP|PPP1R165|SIPP1|WBP-11 WW domain binding protein 11 protein-coding 322.667-3 chr10 64672099 64672828 + 0.833333 NA Intergenic L2|LINE|L2 -153065 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 275.5-27 chr6 142570049 142570761 + 0.833333 NA intron (NR_027312, intron 1 of 2) intron (NR_027312, intron 1 of 2) 67431 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 195-24 chr19 12766193 12766494 + 0.833333 NA intron (NM_013312, intron 14 of 22) intron (NM_013312, intron 14 of 22) 9209 NM_001100176 29911 Hs.30792 NM_013312 ENSG00000095066 HOOK2 HK2 hook microtubule tethering protein 2 protein-coding 238.167-22 chr3 164959168 164959532 + 0.833333 NA Intergenic Intergenic 119146 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 169.5-45 chr8 30804614 30804889 + 0.833333 NA intron (NM_001009552, intron 1 of 6) intron (NM_001009552, intron 1 of 6) 8067 NM_001009552 5516 Hs.491440 NM_004156 ENSG00000104695 PPP2CB PP2Abeta|PP2CB protein phosphatase 2 catalytic subunit beta protein-coding 198-29 chr3 70607452 70607721 + 0.833333 NA Intergenic L2b|LINE|L2 -294948 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 211.5-39 chr5 61078798 61079182 + 0.833333 NA intron (NM_174889, intron 2 of 3) intron (NM_174889, intron 2 of 3) -83326 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 254.333-32 chr7 128135909 128136349 + 0.833333 NA Intergenic CpG 54268 NR_030324 693178 NR_030324 ENSG00000207588 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 190.5-9 chr12 77010558 77010921 + 0.833333 NA Intergenic Intergenic 54830 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 183.5-42 chr6 52549949 52550248 + 0.833333 NA intron (NM_012288, intron 1 of 10) intron (NM_012288, intron 1 of 10) 26962 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 200.667-7 chr10 74306862 74307365 + 0.833333 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 130350 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 192.167-15 chr16 67025226 67025480 + 0.833333 NA Intergenic Intergenic -3796 NM_001755 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor subunit beta protein-coding 286.667-8 chr12 100740478 100741342 + 0.833333 NA Intergenic MER58B|DNA|hAT-Charlie -53866 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 173.5-20 chr14 40373636 40373932 + 0.833333 NA Intergenic Intergenic -580927 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 248.333-9 chr13 24213867 24214448 + 0.833333 NA intron (NM_153023, intron 1 of 11) intron (NM_153023, intron 1 of 11) 40282 NR_046531 100874231 Hs.577998 NR_046531 ENSG00000227213 SPATA13-AS1 - SPATA13 antisense RNA 1 ncRNA 352.333-11 chr5 174435312 174436153 + 0.833333 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 99378 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 240.833-4 chr12 109795220 109795731 + 0.833333 NA intron (NM_001177433, intron 4 of 12) MIR3|SINE|MIR 19321 NM_001177431 59341 Hs.506713 NM_021625 ENSG00000111199 TRPV4 BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel subfamily V member 4 protein-coding 236.5-8 chr12 108967963 108968330 + 0.833333 NA intron (NM_018711, intron 5 of 15) intron (NM_018711, intron 5 of 15) 52922 NM_018711 55530 Hs.4221 NM_018711 ENSG00000166111 SVOP - SV2 related protein protein-coding 176.5-26 chr4 27000065 27000373 + 0.833333 NA intron (NM_001169118, intron 5 of 12) intron (NM_001169118, intron 5 of 12) 139378 NM_020860 57620 Hs.744950 NM_020860 ENSG00000109689 STIM2 - stromal interaction molecule 2 protein-coding 163.5-11 chr12 113356284 113356480 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -2205 NM_001159727 196463 Hs.115896 NM_173542 ENSG00000151176 PLBD2 P76 phospholipase B domain containing 2 protein-coding 226-27 chr20 41199405 41199826 + 0.833333 NA intron (NM_015035, intron 3 of 3) L1M4|LINE|L1 30592 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 224.667-14 chr14 56507946 56508470 + 0.833333 NA Intergenic Tigger3c|DNA|TcMar-Tigger -6123 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 179.5-19 chr16 77171006 77171361 + 0.833333 NA Intergenic Intergenic -20007 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 257.667-24 chr8 123063182 123063698 + 0.833333 NA Intergenic AluSz|SINE|Alu -9267 NM_001363151 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 211-5 chr10 72742708 72743085 + 0.833333 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 21867 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 240.167-4 chr1 119764381 119764812 + 0.833333 NA exon (NM_001166107, exon 2 of 9) exon (NM_001166107, exon 2 of 9) 4336 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 163.333-19 chr14 80663480 80663714 + 0.833333 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 278141 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 258.333-24 chr8 122460215 122460691 + 0.833333 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 108191 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 163.667-58 chr8 136436618 136436965 + 0.833333 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -94007 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 225.833-17 chr3 79272860 79273184 + 0.833333 NA intron (NM_002941, intron 2 of 30) L1MA3|LINE|L1 -138705 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 213.5-18 chr22 33485118 33485454 + 0.833333 NA intron (NM_133642, intron 6 of 14) AluSx|SINE|Alu -48617 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 231.167-2 chr1 53187047 53187569 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie -9516 NM_000098 1376 Hs.713535 NM_000098 ENSG00000157184 CPT2 CPT1|CPTASE|IIAE4 carnitine palmitoyltransferase 2 protein-coding 175.833-28 chr22 18134988 18135321 + 0.833333 NA Intergenic AluJo|SINE|Alu -15016 NM_017414 11274 Hs.38260 NM_017414 ENSG00000184979 USP18 ISG43|PTORCH2|UBP43 ubiquitin specific peptidase 18 protein-coding 166-7 chr10 52213543 52213782 + 0.833333 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 100466 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 208.833-34 chrX 38300948 38301249 + 0.833333 NA intron (NM_001034853, intron 9 of 14) intron (NM_001034853, intron 9 of 14) 25854 NR_159808 6103 Hs.61438 NM_000328 ENSG00000156313 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 203.167-36 chr9 84868333 84868982 + 0.833333 NA intron (NM_001018064, intron 13 of 17) intron (NM_001018064, intron 13 of 17) 162756 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 202.5-13 chr11 106398643 106399115 + 0.833333 NA Intergenic Intergenic 147472 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 272-14 chr14 35821596 35821987 + 0.833333 NA Intergenic Intergenic -4547 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 229.667-25 chr4 43953111 43953439 + 0.833333 NA Intergenic L1M2|LINE|L1 -63586 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 203.333-5 chr1 240906117 240906642 + 0.833333 NA intron (NM_001282773, intron 4 of 15) intron (NM_001282773, intron 4 of 15) -225893 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 215.333-17 chr12 26750346 26750769 + 0.833333 NA intron (NM_002223, intron 2 of 56) MER94|DNA|hAT-Blackjack 82637 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 183.333-29 chr15 60006435 60006742 + 0.833333 NA 3' UTR (NM_012182, exon 2 of 2) 3' UTR (NM_012182, exon 2 of 2) 2277 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 281.667-6 chr10 47032374 47032768 + 0.833333 NA Intergenic L1MA4|LINE|L1 120849 NM_001042361 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 219.667-27 chr4 51836706 51837145 + 0.833333 NA Intergenic Intergenic -6075 NM_015115 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 173-11 chr12 56050277 56050629 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger 8535 NM_001029 6231 Hs.447562 NM_001029 ENSG00000197728 RPS26 DBA10|S26|eS26 ribosomal protein S26 protein-coding 285.667-10 chr16 86428123 86428661 + 0.833333 NA Intergenic AluSz|SINE|Alu 80468 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 360.167-7 chr4 45442281 45443074 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR 681377 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 264-12 chr13 60560273 60560633 + 0.833333 NA intron (NM_030794, intron 12 of 13) intron (NM_030794, intron 12 of 13) -112502 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 205.333-39 chr5 51839103 51839489 + 0.833333 NA Intergenic Intergenic -168735 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 201-30 chr3 99477700 99478078 + 0.833333 NA Intergenic L1MEg|LINE|L1 -160705 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 243.333-44 chr8 134568248 134568815 + 0.833333 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -29540 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 274.333-3 chr1 183909228 183909635 + 0.833333 NA intron (NM_001297669, intron 15 of 18) intron (NM_001297669, intron 15 of 18) 104311 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 224.333-25 chr21 30872248 30872620 + 0.833333 NA Intergenic Intergenic 9146 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 275.5-26 chr5 102606471 102606851 + 0.833333 NA intron (NR_047462, intron 1 of 1) L2c|LINE|L2 25293 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 181.167-32 chr8 63235629 63236062 + 0.833333 NA Intergenic AluSx1|SINE|Alu 66842 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 210-26 chr21 43918485 43918860 + 0.833333 NA intron (NM_001369880, intron 1 of 8) AluSz|SINE|Alu 1884 NM_001369880 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 312.5-19 chr6 37876654 37877565 + 0.833333 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 57382 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 259.833-8 chr16 66581401 66581802 + 0.833333 NA intron (NM_144673, intron 2 of 3) L1MEd|LINE|L1 2138 NM_144673 146225 Hs.195685 NM_144673 ENSG00000140932 CMTM2 CKLFSF2 CKLF like MARVEL transmembrane domain containing 2 protein-coding 285.833-12 chr5 45633044 45633625 + 0.833333 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 63046 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 281.833-2 chr1 192162595 192163232 + 0.833333 NA intron (NM_130782, intron 3 of 4) intron (NM_130782, intron 3 of 4) 4451 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 190-16 chr12 26619321 26619575 + 0.833333 NA intron (NM_002223, intron 26 of 56) MLT1L|LTR|ERVL-MaLR 213746 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 235-4 chr10 90865259 90865820 + 0.833333 NA Intergenic Charlie8|DNA|hAT-Charlie -6413 NM_006413 10556 Hs.139120 NM_006413 ENSG00000148688 RPP30 TSG15 ribonuclease P/MRP subunit p30 protein-coding 194-14 chr13 96984654 96984895 + 0.833333 NA promoter-TSS (NR_051966) promoter-TSS (NR_051966) -602 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 174.5-3 chr10 84873306 84873568 + 0.833333 NA Intergenic L1ME3D|LINE|L1 325468 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 213.333-11 chr16 56813590 56814033 + 0.833333 NA intron (NM_014669, intron 5 of 21) intron (NM_014669, intron 5 of 21) 30355 NM_001242796 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 208.833-25 chr5 153262909 153263299 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -227420 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 174.667-30 chr22 19299321 19299584 + 0.833333 NA Intergenic PRIMAX-int|LTR|ERV1 -7733 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 184-5 chr1 230259554 230259982 + 0.833333 NA intron (NM_004481, intron 11 of 15) LTR8A|LTR|ERV1 166564 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 228-24 chr2 10807824 10808130 + 0.833333 NA intron (NM_001282704, intron 3 of 14) MIRb|SINE|MIR 4808 NM_005742 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 176.5-27 chr4 88109473 88109859 + 0.833333 NA intron (NM_001257386, intron 9 of 15) intron (NM_001257386, intron 9 of 15) 48973 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 177.667-32 chr4 39203536 39203908 + 0.833333 NA exon (NM_001317924, exon 6 of 36) exon (NM_001317924, exon 6 of 36) 21193 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 373.5-5 chr20 44310879 44311790 + 0.833333 NA promoter-TSS (NM_001080472) promoter-TSS (NM_001080472) -132 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 249.667-9 chr12 60471930 60472460 + 0.833333 NA Intergenic Intergenic 782825 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 208-13 chr13 98284113 98284653 + 0.833333 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 75859 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 324-4 chr13 100693492 100694122 + 0.833333 NA Intergenic AluSq2|SINE|Alu -14518 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 272.833 chr1 218549761 218550283 + 0.833333 NA intron (NR_031644, intron 2 of 6) MER34A1|LTR|ERV1 39927 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 310-29 chr8 68953750 68954177 + 0.833333 NA intron (NR_039986, intron 3 of 4) intron (NR_039986, intron 3 of 4) 150227 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 277-18 chr22 32481964 32482298 + 0.833333 NA intron (NM_001257990, intron 2 of 8) intron (NM_001257990, intron 2 of 8) 6894 NM_001257990 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 163.833-35 chr6 149926402 149926614 + 0.833333 NA Intergenic MER41E|LTR|ERV1 -3387 NR_130110 353091 Hs.535023 NM_001001788 ENSG00000203722 RAET1G ULBP5 retinoic acid early transcript 1G protein-coding 215.833-29 chrX 85744554 85744824 + 0.833333 NA Intergenic L1PA15|LINE|L1 -91091 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 231.333-17 chr12 67298550 67299014 + 0.833333 NA intron (NM_018448, intron 6 of 14) Charlie19a|DNA|hAT-Charlie 29424 NM_001329674 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 311.167-3 chr11 8604423 8604944 + 0.833333 NA Intergenic L2a|LINE|L2 -10455 NM_001352395 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 253.833-15 chr8 102585391 102585725 + 0.833333 NA Intergenic Intergenic 33969 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 167.833-42 chr7 24052807 24053111 + 0.833333 NA Intergenic Intergenic -231231 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 174.167-12 chr17 28280515 28280760 + 0.833333 NA intron (NR_028334, intron 2 of 2) intron (NR_028334, intron 2 of 2) 26745 NR_028334 284085 Hs.371796 NM_173624 ENSG00000265480 KRT18P55 - keratin 18 pseudogene 55 pseudo 237-15 chr17 13338036 13338538 + 0.833333 NA Intergenic Intergenic -31527 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 201.333-44 chr6 4790470 4791136 + 0.833333 NA intron (NM_001368127, intron 1 of 5) intron (NM_001368127, intron 1 of 5) 14399 NM_001368127 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 196.667-40 chr6 64976102 64976481 + 0.833333 NA intron (NM_001292009, intron 14 of 43) intron (NM_001292009, intron 14 of 43) -325127 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 203.833-9 chr16 52766067 52766514 + 0.833333 NA Intergenic Intergenic -159315 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 170.667-27 chr21 35716279 35716532 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR -4310 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 336.333-11 chr5 6536537 6537258 + 0.833333 NA Intergenic LTR84a|LTR|ERVL -45239 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 199-33 chr4 35545541 35545797 + 0.833333 NA Intergenic L1PA16|LINE|L1 698270 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 183.667-5 chr1 232939858 232940207 + 0.833333 NA Intergenic Intergenic -10579 NM_001329453 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 220.667-14 chr12 11868900 11869325 + 0.833333 NA intron (NM_001987, intron 4 of 7) AluY|SINE|Alu -180749 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 207.667-16 chr16 62716060 62716372 + 0.833333 NA Intergenic Intergenic -679778 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 178.333-23 chr20 54879199 54879518 + 0.833333 NA Intergenic Intergenic 403765 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 211.333-42 chr6 65169477 65169738 + 0.833333 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -131811 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 173-30 chr3 29012192 29012479 + 0.833333 NA Intergenic Intergenic 268604 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 180-19 chr13 48603614 48604052 + 0.833333 NA Intergenic Intergenic -22932 NR_051983 100129597 Hs.175225 NR_051983 ENSG00000233610 LINC00462 - long intergenic non-protein coding RNA 462 ncRNA 185.333-48 chr7 41826088 41826511 + 0.833333 NA Intergenic Intergenic -123209 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 248.667-25 chr4 1580311 1580678 + 0.833333 NA Intergenic CpG 103497 NM_001013622 152877 Hs.143314 NM_001013622 ENSG00000174137 FAM53A DNTNP family with sequence similarity 53 member A protein-coding 241.333-24 chr4 16289835 16290366 + 0.833333 NA Intergenic Intergenic 63437 NR_027696 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 194.667-8 chr1 233508341 233508639 + 0.833333 NA Intergenic AluSg|SINE|Alu -105616 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 181.5-44 chr6 99520001 99520336 + 0.833333 NA promoter-TSS (NM_001195131) promoter-TSS (NM_001195131) -826 NM_001195131 100130890 Hs.634506 NM_001195131 ENSG00000279170 TSTD3 - thiosulfate sulfurtransferase like domain containing 3 protein-coding 257.167-10 chr7 91152444 91152808 + 0.833333 NA intron (NM_012395, intron 13 of 13) L2c|LINE|L2 -111807 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 201.167-6 chr10 67662255 67662605 + 0.833333 NA intron (NM_001291133, intron 1 of 8) MER44A|DNA|TcMar-Tigger 3230 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 180.667-42 chr7 2190836 2191083 + 0.833333 NA intron (NM_001013837, intron 10 of 18) L1ME1|LINE|L1 41986 NM_001013837 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 257.833 chr10 75329716 75330300 + 0.833333 NA intron (NR_038226, intron 2 of 3) L1MA5|LINE|L1 33625 NR_038224 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 203.167-29 chr6 166466245 166466691 + 0.833333 NA intron (NM_001006932, intron 12 of 21) intron (NM_001006932, intron 12 of 21) -1085 NR_046793 100874353 Hs.675698 NR_046793 ENSG00000232082 RPS6KA2-IT1 - RPS6KA2 intronic transcript 1 ncRNA 216.667-15 chr14 54550787 54551090 + 0.833333 NA Intergenic LTR50|LTR|ERVL -16674 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 184.167-6 chr11 33119358 33120012 + 0.833333 NA intron (NM_001326, intron 3 of 20) intron (NM_001326, intron 3 of 20) 41795 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 236.5-24 chr21 36149229 36149650 + 0.833333 NA intron (NR_038892, intron 1 of 3) intron (NR_038892, intron 1 of 3) 6869 NR_038893 100506428 Hs.651214 NR_038892 ENSG00000236830 CBR3-AS1 PlncRNA-1|PlncRNA1 CBR3 antisense RNA 1 ncRNA 183-47 chr8 132653337 132653617 + 0.833333 NA intron (NR_135912, intron 3 of 11) L1M4|LINE|L1 22068 NM_001321965 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 189.333-23 chr21 15515355 15515697 + 0.833333 NA Intergenic Intergenic -214408 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 171.5-21 chr17 55996787 55997023 + 0.833333 NA Intergenic AluSq2|SINE|Alu -156570 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 211-22 chr2 12774120 12774505 + 0.833333 NA Intergenic Intergenic 36945 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 182.833-4 chr1 172637682 172638059 + 0.833333 NA Intergenic MER102c|DNA|hAT-Charlie -21138 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 296.833-3 chr11 108809789 108810242 + 0.833333 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 144946 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 358-13 chr6 63502664 63503348 + 0.833333 NA Intergenic Intergenic -69006 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 229.333-3 chr1 200626842 200627191 + 0.833333 NA Intergenic Intergenic -6265 NM_014875 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 174-38 chr5 34474946 34475404 + 0.833333 NA Intergenic LTR9A1|LTR|ERV1 -181153 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 242.833-22 chr8 11572141 11572655 + 0.833333 NA Intergenic Intergenic -4137 NR_040035 83655 Hs.742430 NR_040035 ENSG00000170983 LINC00208 C8orf14|NCRNA00208|VIR35 long intergenic non-protein coding RNA 208 ncRNA 195.167-36 chr8 25866110 25866444 + 0.833333 NA intron (NM_022659, intron 10 of 15) L1ME4a|LINE|L1 179136 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 170.667-8 chr13 97367327 97367781 + 0.833333 NA intron (NM_144778, intron 8 of 8) intron (NM_144778, intron 8 of 8) -66615 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 166.333-53 chr8 82193401 82193708 + 0.833333 NA Intergenic Intergenic -351268 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 188.167-7 chr11 110297407 110297763 + 0.833333 NA promoter-TSS (NM_001260492) promoter-TSS (NM_001260492) -873 NM_001260495 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 250.5-25 chr8 130660773 130661175 + 0.833333 NA Intergenic Tigger3a|DNA|TcMar-Tigger -217300 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 207.833-9 chr18 36274755 36275239 + 0.833333 NA Intergenic Intergenic -22716 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 171.667-11 chr11 85120964 85121316 + 0.833333 NA intron (NM_001142699, intron 5 of 27) intron (NM_001142699, intron 5 of 27) -197719 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 214.5-35 chr9 27409473 27409852 + 0.833333 NA intron (NM_024761, intron 2 of 3) L1MB4|LINE|L1 -112512 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 238.167-20 chr3 104162332 104162861 + 0.833333 NA Intergenic Intergenic -638480 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 224.833-10 chr14 67692495 67693027 + 0.833333 NA intron (NM_016026, intron 2 of 6) intron (NM_016026, intron 2 of 6) 3003 NM_001252650 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 protein-coding 239-37 chr8 33572989 33573321 + 0.833333 NA Intergenic AluSx1|SINE|Alu -6027 NM_024787 79845 Hs.151237 NM_024787 ENSG00000133874 RNF122 - ring finger protein 122 protein-coding 169.5-27 chr20 51588571 51588807 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -25850 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 268.833-3 chr10 48676608 48677155 + 0.833333 NA Intergenic Intergenic -7992 NM_001370154 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 193-9 chr12 99386898 99387187 + 0.833333 NA intron (NM_152788, intron 12 of 25) L2b|LINE|L2 -231952 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 286.333-10 chr5 27520689 27521236 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 48670 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 173-14 chr14 54643417 54643790 + 0.833333 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 75991 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 178.833-9 chr14 70694444 70695038 + 0.833333 NA Intergenic MIRb|SINE|MIR -3957 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 223.333-3 chr1 113591607 113591988 + 0.833333 NA intron (NM_001142782, intron 5 of 20) intron (NM_001142782, intron 5 of 20) 167358 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 221.667-44 chr8 64248973 64249384 + 0.833333 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 119380 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 188.833-9 chr13 104582687 104583116 + 0.833333 NA Intergenic Intergenic -882966 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 165-24 chr17 73139141 73139343 + 0.833333 NA Intergenic AluSx|SINE|Alu -25768 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 188-4 chr1 109604936 109605499 + 0.833333 NA intron (NM_005272, intron 6 of 7) intron (NM_005272, intron 6 of 7) 6324 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 228.167-3 chr10 72339716 72339989 + 0.833333 NA intron (NR_157570, intron 5 of 8) AluSx1|SINE|Alu 15067 NR_157570 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 245.167 chr1 112700673 112701037 + 0.833333 NA TTS (NM_001369507) TTS (NM_001369507) 6201 NM_001042679 389 Hs.502659 NM_175744 ENSG00000155366 RHOC ARH9|ARHC|H9|RHOH9 ras homolog family member C protein-coding 196-5 chr12 8681233 8681507 + 0.833333 NA promoter-TSS (NM_001352267) promoter-TSS (NM_001352267) -230 NR_147945 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 222.167-13 chr14 55575995 55576393 + 0.833333 NA TTS (NR_027123) TTS (NR_027123) 3898 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 228.5-20 chr3 104516860 104517315 + 0.833333 NA Intergenic LTR49-int|LTR|ERV1 -849626 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 164.167-5 chr1 243923873 243924117 + 0.833333 NA intron (NR_033883, intron 1 of 11) AluJb|SINE|Alu 6593 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 171-33 chr2 152726189 152726516 + 0.833333 NA intron (NR_146431, intron 2 of 3) intron (NR_146431, intron 2 of 3) 7715 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 194.5-43 chr6 106873460 106873770 + 0.833333 NA Intergenic Intergenic -86074 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 171.167-8 chr10 70223481 70223713 + 0.833333 NA intron (NM_021129, intron 2 of 10) intron (NM_021129, intron 2 of 10) 9832 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 178.5-37 chr7 24736851 24737239 + 0.833333 NA intron (NM_004403, intron 3 of 9) L1MA3|LINE|L1 20419 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 210.167-20 chr19 30749200 30749539 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 376985 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 197.5-33 chr6 155719850 155720371 + 0.833333 NA Intergenic L1MA6|LINE|L1 205266 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 164.5-51 chr7 78924606 78924834 + 0.833333 NA intron (NM_001301128, intron 2 of 20) L1PA3|LINE|L1 -84268 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 171.833-3 chr1 153653643 153653925 + 0.833333 NA Intergenic AluSz6|SINE|Alu -4870 NR_052019 23557 Hs.32018 NM_012437 ENSG00000143553 SNAPIN BLOC1S7|BLOS7|BORCS3|SNAPAP SNAP associated protein protein-coding 250.5-22 chr5 174648696 174649151 + 0.833333 NA Intergenic LTR12|LTR|ERV1 -75659 NM_001363626 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 171.333-37 chr4 41584991 41585282 + 0.833333 NA intron (NM_001330786, intron 1 of 22) L1MB4|LINE|L1 -27573 NM_001112720 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 203.167-25 chr4 81327950 81328296 + 0.833333 NA Intergenic Intergenic -112901 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 254.667-30 chr6 53096978 53097329 + 0.833333 NA intron (NM_033481, intron 12 of 12) intron (NM_033481, intron 12 of 12) 26180 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 168.167-38 chr9 94284569 94285065 + 0.833333 NA intron (NM_194320, intron 2 of 4) L1M4|LINE|L1 -25506 NR_160773 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 218.5-32 chr8 80326388 80326793 + 0.833333 NA Intergenic AluSq2|SINE|Alu 85201 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 229.167-16 chr5 51039987 51040526 + 0.833333 NA Intergenic Intergenic -70069 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 276.667-2 chr1 47710705 47711118 + 0.833333 NA Intergenic Intergenic -273594 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 210.5-8 chr12 17239003 17239425 + 0.833333 NA Intergenic MIRb|SINE|MIR 250467 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 299.833-7 chr12 10074257 10074961 + 0.833333 NA intron (NM_001297750, intron 5 of 6) intron (NM_001297750, intron 5 of 6) 24376 NM_001297748 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 257.333-5 chr10 71850687 71851306 + 0.833333 NA intron (NM_001042465, intron 1 of 14) CpG 255 NM_002778 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 167.667-49 chr8 68155136 68155463 + 0.833333 NA intron (NM_024870, intron 34 of 39) intron (NM_024870, intron 34 of 39) -175074 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 236.833-4 chr12 53500872 53501304 + 0.833333 NA promoter-TSS (NM_134324) promoter-TSS (NM_134324) 167 NM_004178 6895 Hs.326 NM_004178 ENSG00000139546 TARBP2 LOQS|TRBP|TRBP1|TRBP2 TARBP2 subunit of RISC loading complex protein-coding 202.833-28 chr8 95126829 95127143 + 0.833333 NA Intergenic AluSx1|SINE|Alu -6799 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 307-12 chr5 81565096 81565545 + 0.833333 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) -171186 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 163.833-45 chr9 77014226 77014555 + 0.833333 NA Intergenic CpG -5265 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 263.5-17 chr2 61826736 61827260 + 0.833333 NA intron (NR_037710, intron 5 of 5) intron (NR_037710, intron 5 of 5) 27062 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 192.167-8 chr10 49354732 49355214 + 0.833333 NA Intergenic Intergenic 41116 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 231-20 chr20 49063400 49063897 + 0.833333 NA intron (NM_001362762, intron 3 of 24) intron (NM_001362762, intron 3 of 24) 17336 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 223.333-33 chr4 108140385 108140852 + 0.833333 NA intron (NM_001130713, intron 3 of 10) intron (NM_001130713, intron 3 of 10) 26179 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 231.667-8 chr17 83185758 83186231 + 0.833333 NA Intergenic Intergenic -40903 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 RPL23AP87 - ribosomal protein L23a pseudogene 87 pseudo 198.833-21 chr3 159874142 159874515 + 0.833333 NA intron (NM_001197113, intron 6 of 10) intron (NM_001197113, intron 6 of 10) 34467 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 191.667-12 chr14 70043334 70043827 + 0.833333 NA TTS (NR_104122) TTS (NR_104122) 36637 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 191.833-22 chr5 89878556 89878928 + 0.833333 NA Intergenic MIRb|SINE|MIR 137978 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 237.5-10 chr12 84897895 84898374 + 0.833333 NA intron (NM_182767, intron 1 of 11) AluSz6|SINE|Alu 14665 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 172.5-17 chr16 47648307 47648725 + 0.833333 NA intron (NM_001031835, intron 17 of 31) intron (NM_001031835, intron 17 of 31) 187185 NM_000293 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 177.833-18 chr2 20442274 20442555 + 0.833333 NA Intergenic AluY|SINE|Alu -4660 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 176.667-12 chr12 47909084 47909515 + 0.833333 NA Intergenic AluJr|SINE|Alu -4268 NM_001364085 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 209-22 chr20 62727261 62727639 + 0.833333 NA intron (NM_002531, intron 1 of 3) intron (NM_002531, intron 1 of 3) 18614 NM_002531 4923 Hs.590869 NM_002531 ENSG00000101188 NTSR1 NTR neurotensin receptor 1 protein-coding 163.833-36 chr6 150253331 150253608 + 0.833333 NA Intergenic Intergenic 110425 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 241-24 chr5 18390426 18390783 + 0.833333 NA Intergenic Tigger3|DNA|TcMar-Tigger 583330 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 169.667-25 chr15 33008820 33009069 + 0.833333 NA intron (NM_001277313, intron 6 of 20) intron (NM_001277313, intron 6 of 20) 59230 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 237-35 chr6 96897494 96897964 + 0.833333 NA promoter-TSS (NM_001323258) promoter-TSS (NM_001323258) 162 NM_014165 29078 Hs.512144 NM_014165 ENSG00000123545 NDUFAF4 C6orf66|HRPAP20|HSPC125|MC1DN15|My013|bA22L21.1 NADH:ubiquinone oxidoreductase complex assembly factor 4 protein-coding 273.667-22 chrX 104193918 104194343 + 0.833333 NA 3' UTR (NM_207318, exon 6 of 6) 3' UTR (NM_207318, exon 6 of 6) 27677 NM_207318 139231 Hs.496535 NM_207318 ENSG00000123575 FAM199X CXorf39 family with sequence similarity 199, X-linked protein-coding 238.167-24 chr5 14081685 14081982 + 0.833333 NA Intergenic Charlie1a|DNA|hAT-Charlie -61509 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 212-47 chr8 120365373 120365847 + 0.833333 NA intron (NM_021110, intron 45 of 47) intron (NM_021110, intron 45 of 47) 79540 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 175.833-40 chr7 129294163 129294677 + 0.833333 NA intron (NM_001130720, intron 1 of 16) intron (NM_001130720, intron 1 of 16) 69390 NM_015328 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 198.833-29 chr7 322050 322317 + 0.833333 NA Intergenic CpG -57242 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 196.5-17 chr19 10928640 10929067 + 0.833333 NA promoter-TSS (NM_001321439) promoter-TSS (NM_001321439) 42 NM_138358 90580 Hs.164026 NM_138358 ENSG00000142444 TIMM29 C19orf52|TIM29 translocase of inner mitochondrial membrane 29 protein-coding 243.833-21 chr6 51933888 51934548 + 0.833333 NA exon (NM_170724, exon 37 of 61) exon (NM_170724, exon 37 of 61) 153395 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 165.667-15 chr12 89209295 89209594 + 0.833333 NA Intergenic Intergenic 143057 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 235.5-4 chr10 19822400 19822827 + 0.833333 NA intron (NM_032812, intron 1 of 13) L1MA9|LINE|L1 6181 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 262.333-3 chr1 233113162 233113685 + 0.833333 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 162581 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 168.333-57 chr6 53232339 53232645 + 0.833333 NA Intergenic Intergenic -44501 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 246.333-18 chr14 32915049 32915584 + 0.833333 NA Intergenic Intergenic -23563 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 212.166-5 chr17 72580419 72580957 + 0.833333 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 12116 NR_036488 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 254.667-3 chr10 72764966 72765535 + 0.833333 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 44221 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 212.833-21 chr6 42225309 42225789 + 0.833333 NA 3' UTR (NM_033502, exon 18 of 18) 3' UTR (NM_033502, exon 18 of 18) -7688 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 166.833-35 chrX 79191359 79191781 + 0.833333 NA Intergenic L1MB2|LINE|L1 20598 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 211.333-18 chr16 87025323 87025779 + 0.833333 NA Intergenic Intergenic -32233 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 170.833-24 chr3 73138102 73138599 + 0.833333 NA Intergenic Intergenic 76691 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 240.5-6 chr13 46896789 46897145 + 0.833333 NA 5' UTR (NM_000621, exon 1 of 4) 5' UTR (NM_000621, exon 1 of 4) 109 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 192.833-19 chr2 98331718 98332111 + 0.833333 NA Intergenic Intergenic -14241 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 238.5-23 chr3 5026585 5027010 + 0.833333 NA Intergenic Intergenic -46836 NR_125916 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 211.667-16 chr2 55282349 55282630 + 0.833333 NA non-coding (NR_027258, exon 1 of 1) non-coding (NR_027258, exon 1 of 1) 170 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 174-45 chr7 98836796 98837041 + 0.833333 NA Intergenic MIR|SINE|MIR 33096 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 176.5-22 chr3 3801279 3801519 + 0.833333 NA promoter-TSS (NR_149025) promoter-TSS (NR_149025) -524 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 170.333-53 chr8 56059852 56060098 + 0.833333 NA Intergenic L1MB2|LINE|L1 13926 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 196.167-4 chr10 47149639 47150204 + 0.833333 NA Intergenic L2c|LINE|L2 -150276 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 209.5-14 chr14 50337098 50337622 + 0.833333 NA intron (NM_001282236, intron 7 of 8) AluJr4|SINE|Alu 25036 NM_001003803 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 232.167-2 chr10 17739655 17739980 + 0.833333 NA Intergenic Intergenic -12384 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 163.667-50 chr6 37721905 37722388 + 0.833333 NA Intergenic AluJb|SINE|Alu -24263 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 199.333-23 chr18 10689550 10690045 + 0.833333 NA exon (NM_022068, exon 45 of 52) exon (NM_022068, exon 45 of 52) 27864 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 200.667-16 chr14 75338502 75338974 + 0.833333 NA Intergenic Intergenic 44334 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 180.833-6 chr12 90377808 90378059 + 0.833333 NA Intergenic Intergenic 84615 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 174.667-36 chr3 174189136 174189659 + 0.833333 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -268601 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 212-49 chr9 99950065 99950381 + 0.833333 NA intron (NM_017919, intron 3 of 7) intron (NM_017919, intron 3 of 7) 43569 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 193.333-29 chr2 76978216 76978597 + 0.833333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -7559 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 239-16 chr19 53944790 53945278 + 0.833333 NA Intergenic AluJo|SINE|Alu -17903 NM_031895 59283 Hs.631595 NM_031895 ENSG00000142408 CACNG8 - calcium voltage-gated channel auxiliary subunit gamma 8 protein-coding 195-35 chr5 29401222 29401490 + 0.833333 NA Intergenic L1MB7|LINE|L1 -5380 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 236-15 chr4 78441207 78441588 + 0.833333 NA intron (NM_001166133, intron 41 of 41) intron (NM_001166133, intron 41 of 41) -110373 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 178.167-31 chr9 110481069 110481454 + 0.833333 NA exon (NM_153366, exon 12 of 48) exon (NM_153366, exon 12 of 48) 98480 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 182.5-15 chr14 68387385 68387716 + 0.833333 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 241237 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 172.167-13 chr2 219510422 219510732 + 0.833333 NA Intergenic Intergenic -3593 NM_182847 55515 Hs.87469 NM_018674 ENSG00000072182 ASIC4 ACCN4|BNAC4 acid sensing ion channel subunit family member 4 protein-coding 186.5 chr1 80796576 80796894 + 0.833333 NA Intergenic MER44A|DNA|TcMar-Tigger 155448 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 175-48 chr5 129460894 129461299 + 0.833333 NA promoter-TSS (NR_125748) promoter-TSS (NR_125748) -407 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 315-17 chr7 41704887 41705761 + 0.833333 NA intron (NR_027118, intron 1 of 3) intron (NR_027118, intron 1 of 3) -2234 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 197.667 chr1 145946953 145947287 + 0.833333 NA intron (NM_153713, intron 2 of 5) intron (NM_153713, intron 2 of 5) 10897 NM_153713 128077 Hs.740619 NM_153713 ENSG00000271601 LIX1L - limb and CNS expressed 1 like protein-coding 196.833-19 chr4 64123401 64123763 + 0.833333 NA Intergenic (TAATATG)n|Simple_repeat|Simple_repeat 285868 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 169.167-20 chr21 43935466 43935702 + 0.833333 NA intron (NM_001037553, intron 1 of 8) intron (NM_001037553, intron 1 of 8) 10186 NM_001037553 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 169.333-45 chr4 6798020 6798487 + 0.833333 NA intron (NM_001100590, intron 1 of 8) intron (NM_001100590, intron 1 of 8) 15521 NM_001100590 9778 Hs.79276 NM_014743 ENSG00000170871 KIAA0232 - KIAA0232 protein-coding 188.5-55 chr8 139421834 139422228 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 281092 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 175.167-2 chr1 108753420 108753730 + 0.833333 NA intron (NM_007269, intron 3 of 18) intron (NM_007269, intron 3 of 18) 6901 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 232.667-31 chr5 168740565 168740962 + 0.833333 NA intron (NM_003062, intron 20 of 35) intron (NM_003062, intron 20 of 35) 27492 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 221.167-17 chr3 118135599 118135999 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -444874 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 241.833-13 chr8 60609783 60610131 + 0.833333 NA intron (NM_002865, intron 6 of 7) AluJb|SINE|Alu -68783 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 219.333-13 chr14 74492925 74493464 + 0.833333 NA promoter-TSS (NM_001272007) promoter-TSS (NM_001272007) 318 NM_001363688 10577 Hs.433222 NM_006432 ENSG00000119655 NPC2 EDDM1|HE1 NPC intracellular cholesterol transporter 2 protein-coding 368.667-10 chr20 45321064 45321807 + 0.833333 NA Intergenic AluSz|SINE|Alu -12906 NM_003833 8785 Hs.278489 NM_003833 ENSG00000124159 MATN4 - matrilin 4 protein-coding 297.667-22 chr6 73354204 73354958 + 0.833333 NA promoter-TSS (NM_001025290) promoter-TSS (NM_001025290) -305 NM_001025290 340168 Hs.125331 NM_001025290 ENSG00000203909 DPPA5 ESG1 developmental pluripotency associated 5 protein-coding 215.667-44 chr8 120427499 120427942 + 0.833333 NA intron (NM_014078, intron 3 of 6) FLAM_C|SINE|Alu 17430 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 204.833-24 chr5 150701098 150701402 + 0.833333 NA promoter-TSS (NM_018047) promoter-TSS (NM_018047) -188 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 175.333-58 chrX 122662611 122662965 + 0.833333 NA Intergenic Intergenic -521455 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 193-36 chr8 102109383 102109798 + 0.833333 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 14744 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 231-27 chr7 21507395 21507784 + 0.833333 NA intron (NM_003112, intron 5 of 5) HERVP71A-int|LTR|ERV1 -35450 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 298-4 chr12 95003683 95004284 + 0.833333 NA promoter-TSS (NM_001258338) promoter-TSS (NM_001258338) -270 NM_001258338 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 200.167-25 chr7 40311792 40312214 + 0.833333 NA intron (NM_024728, intron 8 of 14) intron (NM_024728, intron 8 of 14) 177027 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 247.167-20 chr6 47856570 47857064 + 0.833333 NA Intergenic Intergenic 69749 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 169.833-16 chr14 78566106 78566446 + 0.833333 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 162557 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 256.667-28 chr8 63958469 63958906 + 0.833333 NA intron (NR_125826, intron 4 of 4) HAL1ME|LINE|L1 189257 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 182-6 chr14 53096462 53096778 + 0.833333 NA intron (NM_030637, intron 2 of 11) intron (NM_030637, intron 2 of 11) 56703 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 275.667-30 chr9 89315579 89316035 + 0.833333 NA intron (NM_001827, intron 2 of 2) intron (NM_001827, intron 2 of 2) -2693 NM_001282688 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 167.667-45 chr7 80160970 80161206 + 0.833333 NA intron (NM_001256414, intron 1 of 7) MER103C|DNA|hAT-Charlie 25304 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 165.333-11 chr11 41111453 41111770 + 0.833333 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 348025 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 257.667-23 chr7 81252631 81253042 + 0.833333 NA Intergenic Intergenic 308983 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 174.333-33 chr5 110135466 110135896 + 0.833333 NA Intergenic L1PA7|LINE|L1 252499 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 172.667-6 chr10 60781467 60782003 + 0.833333 NA intron (NM_033379, intron 2 of 6) intron (NM_033379, intron 2 of 6) 3257 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 174.167-47 chr9 79611346 79611782 + 0.833333 NA intron (NM_001282760, intron 5 of 20) intron (NM_001282760, intron 5 of 20) 38387 NM_001351547 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 219.834-4 chr1 188328396 188329049 + 0.833333 NA Intergenic Intergenic 885094 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 183.667-45 chr5 35950924 35951187 + 0.833333 NA TTS (NM_152404) TTS (NM_152404) 12254 NR_104630 100506406 Hs.116864 NR_104630 ENSG00000249748 LOC100506406 - uncharacterized LOC100506406 ncRNA 252.167-4 chr1 190124434 190124863 + 0.833333 NA intron (NM_199051, intron 7 of 7) intron (NM_199051, intron 7 of 7) 351362 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 311-4 chr14 66360521 66361268 + 0.833333 NA Intergenic Intergenic -125477 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 271.5-26 chr3 170079901 170080566 + 0.833333 NA intron (NM_014373, intron 3 of 3) intron (NM_014373, intron 3 of 3) 42238 NM_014373 26996 Hs.231320 NM_014373 ENSG00000173890 GPR160 GPCR1|GPCR150 G protein-coupled receptor 160 protein-coding 187.167-13 chr14 62281954 62282244 + 0.833333 NA Intergenic LTR103b_Mam|LTR|ERV1? -142126 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 185.667-20 chr15 63742042 63742483 + 0.833333 NA intron (NM_003922, intron 12 of 77) L1MB7|LINE|L1 91686 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 218.667-34 chr7 129235730 129236021 + 0.833333 NA intron (NM_001130720, intron 1 of 16) L1ME3G|LINE|L1 10845 NM_015328 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 276-19 chr4 116010088 116010639 + 0.833333 NA Intergenic Intergenic -289362 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 180.167-14 chr4 56441100 56441397 + 0.833333 NA intron (NM_001079525, intron 1 of 9) intron (NM_001079525, intron 1 of 9) 4988 NM_001079525 10606 Hs.518774 NM_006452 ENSG00000128050 PAICS ADE2|ADE2H1|AIRC|PAIS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase protein-coding 177.167-3 chr10 92405019 92405483 + 0.833333 NA Intergenic L2|LINE|L2 -13410 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 177.333-30 chr6 53046345 53046774 + 0.833333 NA intron (NM_014920, intron 1 of 13) Plat_L3|LINE|CR1 15243 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 216.5-43 chr7 83272044 83272773 + 0.833333 NA Intergenic Intergenic -109524 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 237.333-34 chr6 152232686 152233081 + 0.833333 NA intron (NM_182961, intron 112 of 145) L2c|LINE|L2 -47505 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 203-34 chr9 4382873 4383414 + 0.833333 NA Intergenic Intergenic -83075 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 218.5-16 chr14 60678939 60679311 + 0.833333 NA Intergenic MIR|SINE|MIR -29648 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 184.5-46 chr5 175385550 175385837 + 0.833333 NA Intergenic L1MD2|LINE|L1 58489 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 206.167-4 chr11 111403576 111403923 + 0.833333 NA Intergenic MamTip2|DNA|hAT-Tip100 14437 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 196.667-44 chr7 38854242 38854661 + 0.833333 NA intron (NM_014396, intron 4 of 28) intron (NM_014396, intron 4 of 28) 54740 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 197-14 chr2 9522793 9523161 + 0.833333 NA intron (NM_003183, intron 7 of 18) intron (NM_003183, intron 7 of 18) 32853 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 287.167-15 chr6 150600765 150601334 + 0.833333 NA intron (NM_001329799, intron 1 of 15) intron (NM_001329799, intron 1 of 15) 1164 NR_138136 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 164.667-51 chr7 95886762 95887163 + 0.833333 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 114456 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 180.167-22 chr6 75524516 75524788 + 0.833333 NA Intergenic Intergenic -30852 NR_110608 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 217.167-32 chr7 137436615 137437118 + 0.833333 NA intron (NM_001321710, intron 28 of 32) L1ME3D|LINE|L1 -93133 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 250-28 chr5 145683308 145683772 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR 151802 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 262.667-22 chr20 2305192 2305564 + 0.833333 NA intron (NM_003245, intron 1 of 12) MER21C|LTR|ERVL 9377 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 165-33 chr20 45058437 45058840 + 0.833333 NA intron (NM_001352385, intron 11 of 11) intron (NM_001352385, intron 11 of 11) 42489 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 267.667-5 chr1 166612283 166612729 + 0.833333 NA non-coding (NR_002925, exon 3 of 7) non-coding (NR_002925, exon 3 of 7) 8590 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 190.333-35 chr6 151389435 151389730 + 0.833333 NA intron (NM_020861, intron 1 of 2) intron (NM_020861, intron 1 of 2) 1977 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 208.5-16 chr18 53751764 53752147 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -170896 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 189-57 chr9 26378768 26379023 + 0.833333 NA Intergenic L2c|LINE|L2 312220 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 204-8 chr10 67567944 67568485 + 0.833333 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 97446 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 218.333-22 chr3 190567103 190567618 + 0.833333 NA intron (NR_157352, intron 3 of 10) (ATA)n|Simple_repeat|Simple_repeat 53275 NM_001167930 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 255.5-7 chr11 57491850 57492242 + 0.833333 NA intron (NM_001198810, intron 8 of 14) intron (NM_001198810, intron 8 of 14) 22863 NM_001198810 8501 Hs.591952 NM_003627 ENSG00000149150 SLC43A1 LAT3|PB39|POV1|R00504 solute carrier family 43 member 1 protein-coding 183.167-3 chr11 8168618 8168862 + 0.833333 NA intron (NM_001346692, intron 1 of 6) CpG 285 NR_144497 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 186.667-55 chr6 161438536 161438795 + 0.833333 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -32312 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 340.833-15 chr9 131181517 131181937 + 0.833333 NA intron (NM_001318324, intron 24 of 35) L1M4|LINE|L1 -8412 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 215.5-10 chr20 52017846 52018367 + 0.833333 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat 87378 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 175.667-54 chr8 132282835 132283092 + 0.833333 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 164299 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 204.667-9 chr14 23187248 23187562 + 0.833333 NA intron (NM_001370218, intron 1 of 15) AluJr|SINE|Alu 2084 NM_001370218 100507650 NM_001282322 ENSG00000215277 RNF212B C14orf164 ring finger protein 212B protein-coding 204.667 chr1 32761683 32762032 + 0.833333 NA intron (NM_001369553, intron 1 of 6) intron (NM_001369553, intron 1 of 6) -3770 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 187-10 chr11 91946853 91947285 + 0.833333 NA Intergenic Intergenic -277965 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 179.833-22 chr3 54416715 54417151 + 0.833333 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 222924 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 195.667-46 chr9 131608161 131608665 + 0.833333 NA intron (NM_198679, intron 11 of 23) intron (NM_198679, intron 11 of 23) 62890 NM_001365666 642515 NM_001365666 ENSG00000283526 PRRT1B DSPD2|IFITMD8 proline rich transmembrane protein 1B protein-coding 181.833-13 chr2 112593326 112593628 + 0.833333 NA Intergenic Intergenic 8623 NM_001304354 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|CHTM1|MIC14|MIX14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 232.833 chr1 15832959 15833510 + 0.833333 NA TTS (NR_024279) TTS (NR_024279) -14473 NM_015001 23013 Hs.744843 NM_015001 ENSG00000065526 SPEN HIAA0929|MINT|RBM15C|SHARP spen family transcriptional repressor protein-coding 280-19 chr4 39331679 39332117 + 0.833333 NA intron (NM_001204747, intron 4 of 24) THE1B|LTR|ERVL-MaLR 34464 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 272.833-9 chr17 33778150 33778823 + 0.833333 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -244726 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 230.333 chr1 230303491 230303806 + 0.833333 NA Intergenic Intergenic 122684 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 176.333-12 chr16 68704129 68704446 + 0.833333 NA Intergenic AluYi6|SINE|Alu -33005 NM_001317185 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 181.5-6 chr10 104271945 104272329 + 0.833333 NA intron (NM_001191013, intron 1 of 5) L1MC1|LINE|L1 2953 NM_183239 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 217-20 chr20 52835805 52836070 + 0.833333 NA Intergenic AluSq|SINE|Alu -136421 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 220.667-12 chr11 115383236 115383795 + 0.833333 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -13241 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 224.167 chr1 31012392 31012702 + 0.833333 NA intron (NM_001020658, intron 3 of 21) A-rich|Low_complexity|Low_complexity -44310 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 254.833-11 chr2 22370360 22370705 + 0.833333 NA Intergenic L2a|LINE|L2 -165947 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 187.167-2 chr1 28168730 28169082 + 0.833333 NA intron (NM_001164722, intron 1 of 1) AluSz|SINE|Alu 7784 NM_001164723 5724 Hs.77542 NM_000952 ENSG00000169403 PTAFR PAFR platelet activating factor receptor protein-coding 203.667-58 chr8 132795786 132796131 + 0.833333 NA intron (NM_198513, intron 4 of 7) MER44A|DNA|TcMar-Tigger 20570 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 203.5-14 chr14 26400163 26400600 + 0.833333 NA Intergenic Intergenic 153049 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 180-14 chr11 90639467 90639797 + 0.833333 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -83775 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 169.667-62 chr9 131360068 131360435 + 0.833333 NA Intergenic Intergenic -69839 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 189.167-28 chr4 48717657 48717925 + 0.833333 NA intron (NM_015030, intron 1 of 63) AluJr|SINE|Alu 62508 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 190.833-7 chr12 6925636 6925894 + 0.833333 NA intron (NM_001007026, intron 1 of 9) intron (NM_001007026, intron 1 of 9) 1306 NM_001007026 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 165.333-18 chr14 53857350 53857746 + 0.833333 NA Intergenic Intergenic 90936 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 228.167-9 chr12 74020153 74020557 + 0.833333 NA Intergenic Intergenic 272276 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 227.667-12 chr14 21881622 21882019 + 0.833333 NA Intergenic Intergenic -210803 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 224.833-8 chr13 94454939 94455266 + 0.833333 NA intron (NM_001129889, intron 6 of 9) intron (NM_001129889, intron 6 of 9) 24580 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 190-29 chr2 47287684 47288093 + 0.833333 NA intron (NR_110207, intron 1 of 2) L1MB3|LINE|L1 -47427 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 279.333-18 chr3 129893867 129894286 + 0.833333 NA promoter-TSS (NM_001349269) promoter-TSS (NM_001349269) 205 NR_037893 100507032 Hs.529562 NR_037893 ENSG00000271270 TMCC1-AS1 - TMCC1 antisense RNA 1 (head to head) ncRNA 282.167-16 chr7 8235625 8235991 + 0.833333 NA intron (NM_001350838, intron 2 of 11) intron (NM_001350838, intron 2 of 11) 26244 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 282-21 chr3 23376424 23376956 + 0.833333 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 173363 NM_001370228 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 171.333-5 chr1 245126974 245127184 + 0.833333 NA Intergenic Intergenic -27906 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 239-24 chr3 14937724 14938081 + 0.833333 NA Intergenic Intergenic 9603 NR_046254 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 215.167-21 chr3 110297660 110298159 + 0.833333 NA Intergenic L1MCc|LINE|L1 695081 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 178.5-26 chr20 56476859 56477251 + 0.833333 NA exon (NM_016407, exon 4 of 9) exon (NM_016407, exon 4 of 9) 8470 NM_016407 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 174.5 chr1 85321609 85321839 + 0.833333 NA intron (NM_001134445, intron 6 of 6) intron (NM_001134445, intron 6 of 6) -45092 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 268.167-12 chr15 80992553 80993009 + 0.833333 NA Intergenic MamRep38|DNA|hAT -2962 NM_015154 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 198.833-4 chr10 128202270 128202702 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -76063 NM_002417 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 178.167-25 chr6 115896498 115896947 + 0.833333 NA Intergenic Intergenic -142009 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 187.5-35 chr6 132964803 132965078 + 0.833333 NA Intergenic OldhAT1|DNA|hAT-Ac -123140 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 176.667-47 chr5 110246436 110246823 + 0.833333 NA Intergenic L1MA8|LINE|L1 267286 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 197.5-14 chr18 1744166 1744643 + 0.833333 NA Intergenic L1M3de|LINE|L1 -384775 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 175-47 chr5 43470821 43471067 + 0.833333 NA intron (NM_022483, intron 1 of 2) L1MA1|LINE|L1 12921 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 225.167-19 chr3 24405885 24406315 + 0.833333 NA intron (NM_001354709, intron 1 of 10) L1MC|LINE|L1 -87987 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 281.333-13 chr17 32636594 32637177 + 0.833333 NA intron (NM_015194, intron 20 of 21) LTR16C|LTR|ERVL 149892 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 190.333-23 chr2 29189088 29189352 + 0.833333 NA Intergenic Intergenic 34680 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 260.833-8 chr20 50094313 50094732 + 0.833333 NA TTS (NR_104218) TTS (NR_104218) 18628 NM_001032288 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 265.167-9 chr3 190913303 190913894 + 0.833333 NA Intergenic Intergenic 35668 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 271.333 chr1 93661956 93662407 + 0.833333 NA intron (NM_001261409, intron 2 of 11) L3|LINE|CR1 19189 NM_001261409 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 178.667-18 chr17 61536567 61537078 + 0.833333 NA Intergenic L1ME4a|LINE|L1 54397 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 173.833-22 chr20 6738813 6739082 + 0.833333 NA Intergenic Intergenic -2811 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 255.667-9 chr2 37399973 37400412 + 0.833333 NA Intergenic L1MB8|LINE|L1 55562 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 300-11 chr20 6767082 6767488 + 0.833333 NA promoter-TSS (NM_001200) promoter-TSS (NM_001200) -401 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 183.333-37 chr2 144035216 144035545 + 0.833333 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 98313 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 332.667-6 chr18 80170027 80170695 + 0.833333 NA non-coding (NR_028339, exon 3 of 3) non-coding (NR_028339, exon 3 of 3) 22437 NR_028339 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 204-15 chr13 26981232 26981594 + 0.833333 NA Intergenic Intergenic -144120 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 240.333-24 chr8 35368576 35369063 + 0.833333 NA intron (NM_080872, intron 1 of 16) MLT1A|LTR|ERVL-MaLR 133344 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 175.333-46 chr6 42879618 42879843 + 0.833333 NA non-coding (NR_134562, exon 1 of 7) non-coding (NR_134562, exon 1 of 7) 114 NM_001366481 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 223.333-12 chr12 31616893 31617279 + 0.833333 NA Intergenic MER21B|LTR|ERVL -25950 NM_144973 160518 Hs.118166 NM_144973 ENSG00000170456 DENND5B - DENN domain containing 5B protein-coding 377.5-7 chr6 166156854 166157346 + 0.833333 NA TTS (NM_003181) TTS (NM_003181) 10751 NM_001366285 6862 Hs.389457 NM_003181 ENSG00000164458 TBXT SAVA|T|TFT T-box transcription factor T protein-coding 325.833-3 chr21 42893727 42894312 + 0.833333 NA intron (NM_001001503, intron 1 of 2) AluSz|SINE|Alu 710 NM_021075 4731 Hs.473937 NM_021075 ENSG00000160194 NDUFV3 CI-10k|CI-9KD NADH:ubiquinone oxidoreductase subunit V3 protein-coding 210.167-9 chr10 70218539 70218952 + 0.833333 NA intron (NM_021129, intron 3 of 10) intron (NM_021129, intron 3 of 10) 14684 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 300.5-20 chr5 141923362 141923815 + 0.833333 NA promoter-TSS (NM_001142603) promoter-TSS (NM_001142603) -283 NM_014773 9812 Hs.210532 NM_014773 ENSG00000081791 DELE1 DELE|KIAA0141 DAP3 binding cell death enhancer 1 protein-coding 309.5-5 chr18 3192271 3192875 + 0.833333 NA intron (NM_019856, intron 3 of 36) intron (NM_019856, intron 3 of 36) 27395 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 170.5-28 chr3 13613148 13613426 + 0.833333 NA intron (NM_001004019, intron 4 of 17) MLT1H|LTR|ERVL-MaLR -5094 NR_132775 106635526 NR_132775 SNORA93 - small nucleolar RNA, H/ACA box 93 snoRNA 213.333-3 chr10 71622335 71622700 + 0.833333 NA intron (NM_052836, intron 11 of 12) intron (NM_052836, intron 11 of 12) 97261 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 232.333-16 chr2 77148295 77148880 + 0.833333 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 162622 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 220-25 chr5 124418876 124419329 + 0.833333 NA intron (NR_125774, intron 3 of 5) (TATA)n|Simple_repeat|Simple_repeat 19418 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 249-20 chr20 21549425 21549723 + 0.833333 NA Intergenic Intergenic -20450 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 211.5-45 chr7 125661641 125661974 + 0.833333 NA Intergenic MER61E|LTR|ERV1 -397516 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 196.5-12 chr14 81456599 81456903 + 0.833333 NA Intergenic Intergenic -6594 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 283-17 chr6 70349965 70350563 + 0.833333 NA Intergenic MER3|DNA|hAT-Charlie -43938 NR_125857 101928353 NR_125857 EVADR - uncharacterized LOC101928353 ncRNA 215.833-27 chr8 113039301 113039663 + 0.833333 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 337670 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 318.5-10 chr5 54702016 54702764 + 0.833333 NA intron (NR_104658, intron 1 of 2) MIRc|SINE|MIR 934 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 206.667-61 chr9 89442590 89442889 + 0.833333 NA intron (NM_001371200, intron 2 of 20) intron (NM_001371200, intron 2 of 20) 37151 NR_163889 188.833-18 chr2 19470080 19470469 + 0.833333 NA Intergenic L3|LINE|CR1 -111651 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 163.833-30 chr3 193724363 193724735 + 0.833333 NA Intergenic L1ME1|LINE|L1 -97217 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 216.333-28 chr3 7309909 7310310 + 0.833333 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 225175 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 184.5-32 chr3 14948179 14948524 + 0.833333 NA promoter-TSS (NR_046252) promoter-TSS (NR_046252) 90 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 173.667-31 chr20 2196933 2197301 + 0.833333 NA Intergenic MIRb|SINE|MIR -9811 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 224.167-2 chr1 225299427 225299799 + 0.833333 NA intron (NM_001367479, intron 55 of 85) L3|LINE|CR1 128425 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 203.5-37 chr6 114942686 114943065 + 0.833333 NA Intergenic MIRc|SINE|MIR 700960 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 185.167-20 chr22 24247720 24248038 + 0.833333 NA Intergenic Intergenic -2737 NM_004121 2687 Hs.437156 NM_004121 ENSG00000099998 GGT5 GGL|GGT 5|GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 179.667-45 chr8 11122283 11122602 + 0.833333 NA intron (NR_138154, intron 1 of 2) intron (NR_138154, intron 1 of 2) -55353 NR_134308 101929269 Hs.680442 NR_134308 ENSG00000254839 LOC101929269 - uncharacterized LOC101929269 ncRNA 206.833-10 chr21 35208854 35209161 + 0.833333 NA Intergenic Intergenic -159709 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 204.833-8 chr14 25174202 25174675 + 0.833333 NA Intergenic MLT2B2|LTR|ERVL -124141 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 174.833-17 chr3 105818941 105819322 + 0.833333 NA intron (NR_135809, intron 3 of 18) intron (NR_135809, intron 3 of 18) 48460 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 184.833-3 chr1 241491087 241491432 + 0.833333 NA Intergenic Intergenic 28526 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 231.167-28 chr5 76709501 76710061 + 0.833333 NA Intergenic Intergenic -2622 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 312.667-12 chr2 175414830 175415644 + 0.833333 NA Intergenic Intergenic -233527 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 195.667-8 chr11 744911 745392 + 0.833333 NA Intergenic AluSq2|SINE|Alu -2313 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 181.167-13 chr14 47714954 47715316 + 0.833333 NA Intergenic Intergenic -40181 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 181.167-20 chr2 61359 61639 + 0.833333 NA Intergenic L1M2|LINE|L1 -14994 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 168.833 chr1 30737774 30738098 + 0.833333 NA intron (NM_006762, intron 5 of 7) LTR16A1|LTR|ERVL 1296 NR_039616 100616164 NR_039616 ENSG00000264773 MIR4420 mir-4420 microRNA 4420 ncRNA 223.5-33 chr9 14694322 14694762 + 0.833333 NA promoter-TSS (NR_148714) promoter-TSS (NR_148714) -996 NR_148714 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 167.667-37 chr6 50584719 50585112 + 0.833333 NA Intergenic Intergenic -128629 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 168-39 chr4 72947035 72947589 + 0.833333 NA Intergenic Intergenic 122404 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 185.167-11 chr16 87298081 87298335 + 0.833333 NA Intergenic Intergenic -5756 NR_104667 101928682 Hs.149004 NR_104667 ENSG00000261697 LOC101928682 - uncharacterized LOC101928682 ncRNA 194.833-13 chr16 29898131 29898458 + 0.833333 NA intron (NM_001243332, intron 1 of 17) intron (NM_001243332, intron 1 of 17) 970 NM_001243333 26470 Hs.6314 NM_012410 ENSG00000174938 SEZ6L2 BSRPA|PSK-1 seizure related 6 homolog like 2 protein-coding 200.5-13 chr14 74958731 74959205 + 0.833333 NA Intergenic Intergenic -3204 NM_002632 5228 Hs.252820 NM_002632 ENSG00000119630 PGF D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760 placental growth factor protein-coding 252.833-10 chr3 190054108 190054456 + 0.833333 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 66615 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 178-39 chr6 150977023 150977544 + 0.833333 NA intron (NM_001350486, intron 20 of 27) intron (NM_001350486, intron 20 of 27) -29725 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 165.833-27 chr3 13762726 13762966 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR 112125 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 306.667-25 chr9 131834840 131835273 + 0.833333 NA Intergenic Intergenic -95112 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 170 chr1 79816906 79817133 + 0.833333 NA Intergenic MLT1J1|LTR|ERVL-MaLR -718736 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 194.333-15 chr13 29292143 29292521 + 0.833333 NA intron (NM_001033602, intron 4 of 13) intron (NM_001033602, intron 4 of 13) -136328 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 223-28 chr21 29300513 29301010 + 0.833333 NA intron (NM_206866, intron 1 of 4) intron (NM_206866, intron 1 of 4) 1386 NM_206866 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 270.833-19 chr9 120793198 120793730 + 0.833333 NA promoter-TSS (NM_012164) promoter-TSS (NM_012164) -32 NR_027442 100288842 Hs.706815 NR_027442 B3GNT10 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 10 (putative) pseudo 322.5-4 chr12 11577351 11577966 + 0.833333 NA Intergenic Intergenic 29628 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 166.5-14 chr13 62750789 62751071 + 0.833333 NA intron (NR_047029, intron 2 of 7) L1ME3B|LINE|L1 45762 NR_047029 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 194.833-26 chr6 90137540 90137902 + 0.833333 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 159122 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 170.5-17 chr17 57845174 57845458 + 0.833333 NA intron (NM_016070, intron 2 of 4) intron (NM_016070, intron 2 of 4) 4728 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 193.5-53 chr9 36436669 36437373 + 0.833333 NA Intergenic Intergenic -35823 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 163.5-26 chr2 118865917 118866310 + 0.833333 NA Intergenic Intergenic -17930 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 248.833-10 chr18 6877011 6877426 + 0.833333 NA intron (NM_001010000, intron 9 of 16) intron (NM_001010000, intron 9 of 16) 42733 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 254-17 chr20 61119787 61120160 + 0.833333 NA Intergenic L1MC1|LINE|L1 40909 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 221.5-26 chr7 43000943 43001319 + 0.833333 NA Intergenic L1MEg|LINE|L1 68755 NR_156497 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 171.167-39 chrX 31658614 31658950 + 0.833333 NA intron (NM_000109, intron 53 of 78) intron (NM_000109, intron 53 of 78) -150484 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 288.167-21 chr8 125870740 125871278 + 0.833333 NA Intergenic LTR16C|LTR|ERVL 80188 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 222-15 chr14 61732959 61733430 + 0.833333 NA intron (NM_181054, intron 7 of 13) AluSx|SINE|Alu 15895 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 223.833-12 chr17 77316937 77317462 + 0.833333 NA intron (NM_001113491, intron 2 of 11) MLT1D|LTR|ERVL-MaLR -2316 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 214.5-7 chr12 19572752 19573098 + 0.833333 NA Intergenic L1PREC2|LINE|L1 132326 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 211.833-8 chr17 59845745 59846119 + 0.833333 NA Intergenic Intergenic 4666 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 245.667-4 chr12 49244362 49244679 + 0.833333 NA intron (NM_001303114, intron 1 of 3) intron (NM_001303114, intron 1 of 3) 16501 NM_001303115 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 233.667-29 chr6 52551432 52551771 + 0.833333 NA intron (NM_012288, intron 1 of 10) intron (NM_012288, intron 1 of 10) 25459 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 208-4 chr1 225444727 225445055 + 0.833333 NA Intergenic Intergenic -16036 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 190.333-12 chr13 85202908 85203232 + 0.833333 NA Intergenic L1MA8|LINE|L1 -55013 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 275.5-12 chr17 65745561 65746053 + 0.833333 NA intron (NM_001353129, intron 22 of 26) intron (NM_001353129, intron 22 of 26) 80644 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 210.333-13 chr15 47192360 47192711 + 0.833333 NA intron (NM_001198999, intron 1 of 19) L1M5|LINE|L1 8446 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 191.167 chr1 84671486 84671792 + 0.833333 NA intron (NM_001166293, intron 1 of 13) intron (NM_001166293, intron 1 of 13) 18822 NM_001166417 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 187.667-25 chr19 34075895 34076348 + 0.833333 NA Intergenic LTR8B|LTR|ERV1 -96383 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 172.333-20 chr14 73931052 73931439 + 0.833333 NA intron (NM_001242928, intron 12 of 12) intron (NM_001242928, intron 12 of 12) -18689 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 188.5-19 chr16 78396799 78397202 + 0.833333 NA intron (NM_001291997, intron 5 of 7) intron (NM_001291997, intron 5 of 7) 297346 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 210.667-50 chr7 98647457 98647988 + 0.833333 NA Intergenic Intergenic 30437 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 221.833-3 chr10 63520625 63520904 + 0.833333 NA promoter-TSS (NM_001001330) promoter-TSS (NM_001001330) -637 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 171.833-19 chr4 45358045 45358318 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR -631547 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 181.167-30 chr7 110905975 110906412 + 0.833333 NA intron (NM_032549, intron 4 of 5) Tigger13a|DNA|TcMar-Tigger -184813 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 293.167 chr12 52217647 52218157 + 0.833333 NA intron (NR_027358, intron 3 of 4) L1MC4|LINE|L1 6972 NR_027358 283404 Hs.662443 NR_027358 ENSG00000258279 LINC00592 - long intergenic non-protein coding RNA 592 ncRNA 312-9 chr17 42004926 42005553 + 0.833333 NA intron (NM_003315, intron 1 of 13) intron (NM_003315, intron 1 of 13) 11926 NM_001144766 7266 Hs.500156 NM_003315 ENSG00000168259 DNAJC7 DJ11|DJC7|TPR2|TTC2 DnaJ heat shock protein family (Hsp40) member C7 protein-coding 180.333-44 chr5 140449970 140450479 + 0.833333 NA intron (NM_001197030, intron 7 of 9) MLT1H|LTR|ERVL-MaLR 48391 NM_017978 54882 Hs.594084 NM_017747 ENSG00000131503 ANKHD1 MASK|MASK1|PP2500|VBARP ankyrin repeat and KH domain containing 1 protein-coding 175.833-35 chr5 19294972 19295486 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 591043 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 208.667-47 chr8 139991035 139991299 + 0.833333 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 109368 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 175.833-13 chr13 32246350 32246593 + 0.833333 NA intron (NM_023037, intron 47 of 60) L2c|LINE|L2 65483 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 285.333-7 chr3 167501907 167502316 + 0.833333 NA intron (NM_001348951, intron 17 of 18) MSTA|LTR|ERVL-MaLR -27979 NM_006217 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 171.833-22 chr5 4797245 4797641 + 0.833333 NA Intergenic Intergenic 23962 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 164-4 chr10 12711786 12712418 + 0.833333 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) 13251 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 212.333-34 chr8 19843470 19843746 + 0.833333 NA intron (NR_148458, intron 14 of 18) intron (NR_148458, intron 14 of 18) 26192 NM_018142 55174 Hs.512627 NM_018142 ENSG00000104613 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 175.167-30 chr3 128990287 128990531 + 0.833333 NA intron (NM_020741, intron 2 of 7) AluSx|SINE|Alu 1488 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 174.167-31 chr3 188595850 188596368 + 0.833333 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) -27443 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 191-44 chr7 48832729 48833168 + 0.833333 NA Intergenic Intergenic -91599 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 230-23 chr2 61396020 61396581 + 0.833333 NA intron (NM_014709, intron 3 of 79) L1ME3G|LINE|L1 21077 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 209.333 chr1 32142333 32142712 + 0.833333 NA intron (NM_012316, intron 1 of 13) MLT1B|LTR|ERVL-MaLR 34466 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 202.333-37 chr9 126301795 126302270 + 0.833333 NA Intergenic Intergenic -24797 NM_001011703 89853 Hs.162659 NM_033446 ENSG00000196814 MVB12B C9orf28|FAM125B multivesicular body subunit 12B protein-coding 409.5-2 chr10 121007900 121008436 + 0.833333 NA Intergenic MER63D|DNA|hAT-Blackjack 156806 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 227.167-5 chr12 45351596 45351906 + 0.833333 NA intron (NM_001025356, intron 7 of 19) L2b|LINE|L2 59061 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 238-38 chr8 135889203 135889663 + 0.833333 NA Intergenic L2a|LINE|L2 431977 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 203.5-23 chr2 199862214 199862558 + 0.833333 NA Intergenic Intergenic -11213 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 235.333-2 chr1 236748427 236748879 + 0.833333 NA intron (NM_001278344, intron 15 of 22) intron (NM_001278344, intron 15 of 22) -46628 NM_001291939 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 190-43 chr5 115415382 115415639 + 0.833333 NA Intergenic Intergenic -118856 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 217.5-12 chr2 115328434 115328878 + 0.833333 NA intron (NM_001321909, intron 2 of 24) intron (NM_001321909, intron 2 of 24) -15159 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 232.667-10 chr11 103109293 103109726 + 0.833333 NA promoter-TSS (NM_001080463) promoter-TSS (NM_001080463) 83 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 182.333-5 chr11 96631706 96632096 + 0.833333 NA Intergenic PRIMA4-int|LTR|ERV1 123476 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 186-10 chr14 76810866 76811261 + 0.833333 NA intron (NM_001370747, intron 1 of 11) MER20|DNA|hAT-Charlie 1819 NM_001370746 23357 Hs.497448 NM_015305 ENSG00000013523 ANGEL1 Ccr4e|KIAA0759 angel homolog 1 protein-coding 211.333-2 chr1 93503946 93504419 + 0.833333 NA intron (NM_001024948, intron 2 of 13) intron (NM_001024948, intron 2 of 13) 56051 NM_001164473 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 224.833-14 chr2 152861509 152861933 + 0.833333 NA Intergenic LTR16A|LTR|ERVL 143084 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 188-22 chr19 41375999 41376458 + 0.833333 NA promoter-TSS (NM_001098824) promoter-TSS (NM_001098824) -305 NM_001098823 641649 Hs.709417 NM_001042595 ENSG00000142046 TMEM91 DSPC3|IFITMD6 transmembrane protein 91 protein-coding 205.167-5 chr16 47334609 47334977 + 0.833333 NA intron (NM_030790, intron 8 of 17) intron (NM_030790, intron 8 of 17) 126270 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 179.5-29 chr3 20513216 20513567 + 0.833333 NA Intergenic L1MDa|LINE|L1 170923 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 172.333-38 chr22 38506579 38506797 + 0.833333 NA promoter-TSS (NM_001098504) promoter-TSS (NM_001098504) -377 NM_001098504 10521 Hs.528305 NM_006386 ENSG00000100201 DDX17 P72|RH70 DEAD-box helicase 17 protein-coding 179.833-25 chr4 99809990 99810252 + 0.833333 NA Intergenic AluJb|SINE|Alu -6706 NM_001306151 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 190.333-3 chr1 212315806 212316045 + 0.833333 NA intron (NM_001199756, intron 1 of 12) Tigger1|DNA|TcMar-Tigger 14067 NM_001199756 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 220.833-4 chr11 88282129 88282650 + 0.833333 NA Intergenic L2|LINE|L2 55347 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 287.667-8 chr12 127957078 127957465 + 0.833333 NA intron (NR_126452, intron 2 of 3) MER58A|DNA|hAT-Charlie 26620 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 163.333-47 chr5 14502315 14502632 + 0.833333 NA intron (NM_007118, intron 53 of 56) MER33|DNA|hAT-Charlie 38490 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 196.667-11 chr12 12786686 12786997 + 0.833333 NA intron (NM_030817, intron 1 of 1) CpG 1182 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 230.333-33 chr8 85971843 85972310 + 0.833333 NA Intergenic Intergenic 97592 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 274.833-2 chr1 97175654 97176046 + 0.833333 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 79927 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 196.5-7 chr11 62737364 62737599 + 0.833333 NA intron (NM_173810, intron 2 of 2) intron (NM_173810, intron 2 of 2) 8995 NM_173810 283237 Hs.31704 NM_173810 ENSG00000162222 TTC9C - tetratricopeptide repeat domain 9C protein-coding 194.333-10 chr11 26660019 26660461 + 0.833333 NA intron (NM_031418, intron 26 of 26) intron (NM_031418, intron 26 of 26) 61820 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 246.167-13 chr17 81905786 81906392 + 0.833333 NA intron (NM_002861, intron 9 of 12) intron (NM_002861, intron 9 of 12) 3851 NM_148896 256933 Hs.569843 NM_148896 ENSG00000183979 NPB L7|PPL7|PPNPB neuropeptide B protein-coding 168.167-37 chr9 36299922 36300326 + 0.833333 NA Intergenic AluSx4|SINE|Alu -23068 NM_001190388 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 229.833-2 chr1 151936679 151937109 + 0.833333 NA Intergenic Intergenic -27383 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 171.667-22 chr17 56817715 56818143 + 0.833333 NA intron (NM_001085430, intron 4 of 7) AluJb|SINE|Alu 15991 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 197.667-23 chr15 76081982 76082274 + 0.833333 NA intron (NM_152335, intron 1 of 10) intron (NM_152335, intron 1 of 10) 22143 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 184.667-37 chr4 46273506 46273727 + 0.833333 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 115763 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 198.667-4 chr10 79355408 79355880 + 0.833333 NA TTS (NM_005729) TTS (NM_005729) 8175 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 185-30 chr2 55065356 55065617 + 0.833333 NA intron (NM_001321904, intron 2 of 9) L1ME3B|LINE|L1 -14214 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 174.167-28 chr22 42851906 42852201 + 0.833333 NA intron (NM_001142293, intron 1 of 14) MER45A|DNA|hAT-Tip100 5220 NM_001142293 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 202.667-21 chr2 126366090 126366510 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -248315 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 168.667-6 chr11 8815324 8815711 + 0.833333 NA intron (NM_005418, intron 3 of 22) L2c|LINE|L2 -4182 NM_139157 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 393.167-5 chr2 157572319 157572880 + 0.833333 NA intron (NM_001111031, intron 2 of 8) intron (NM_001111031, intron 2 of 8) 24961 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 333.833-2 chr12 7186251 7186792 + 0.833333 NA Intergenic LTR17|LTR|ERV1 -2164 NM_001351124 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 257.333-8 chr14 53984734 53985272 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR -28112 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 261.5-28 chr4 5638543 5639189 + 0.833333 NA intron (NM_147127, intron 10 of 21) MLT1C|LTR|ERVL-MaLR 69693 NM_147127 132884 Hs.87306 NM_147127 ENSG00000173040 EVC2 LBN|WAD EvC ciliary complex subunit 2 protein-coding 210.333-3 chr1 162022860 162023120 + 0.833333 NA intron (NM_001347700, intron 1 of 7) intron (NM_001347700, intron 1 of 7) 1475 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 293-4 chr10 76011296 76011963 + 0.833333 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 228868 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 234.5-31 chr3 180738564 180738996 + 0.833333 NA intron (NR_109986, intron 7 of 13) Tigger3a|DNA|TcMar-Tigger -59291 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 225.167-3 chr10 42851676 42852023 + 0.833333 NA Intergenic (TGT)n|Simple_repeat|Simple_repeat -19672 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 198.833-23 chr4 63130159 63130568 + 0.833333 NA Intergenic Intergenic -968598 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 191-46 chr8 10745704 10746027 + 0.833333 NA intron (NR_146188, intron 1 of 2) L1MB3|LINE|L1 -15354 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box transcription factor 7 protein-coding 176.833-34 chr6 19752173 19752593 + 0.833333 NA intron (NR_134651, intron 2 of 3) L2b|LINE|L2 52376 NR_134651 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 208-24 chr2 28820626 28821011 + 0.833333 NA intron (NM_001008779, intron 2 of 4) intron (NM_001008779, intron 2 of 4) 4821 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 329 chr12 55659559 55660226 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie -21844 NM_152637 196410 Hs.51483 NM_152637 ENSG00000170439 METTL7B ALDI methyltransferase like 7B protein-coding 200.5-6 chr11_JH159136v1_alt 188449 188731 + 0.833333 NA Intergenic L1M4a2|LINE|L1 2216 NM_001013356 504189 NM_001013356 OR8U8 - olfactory receptor family 8 subfamily U member 8 protein-coding 210.5-35 chr7 39206144 39206440 + 0.833333 NA intron (NM_001370959, intron 3 of 9) intron (NM_001370959, intron 3 of 9) 122842 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 285.667-22 chr8 137317945 137318336 + 0.833333 NA Intergenic L1MDa|LINE|L1 95448 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 184.5-39 chr4 52386530 52386806 + 0.833333 NA Intergenic L1PA16|LINE|L1 269871 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 393.333-3 chr2 226800765 226801621 + 0.833333 NA intron (NM_001349069, intron 1 of 8) intron (NM_001349069, intron 1 of 8) 1034 NM_001349069 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 182.833-27 chr5 17657260 17657625 + 0.833333 NA Intergenic L1PB1|LINE|L1 -1804 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 172.5-9 chr11 23387677 23388009 + 0.833333 NA Intergenic L1MD1|LINE|L1 31347 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 202.167-8 chr12 41853199 41853639 + 0.833333 NA Intergenic L1MA5|LINE|L1 89230 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 357.667-3 chr10 53846975 53847522 + 0.833333 NA intron (NM_001354411, intron 29 of 34) intron (NM_001354411, intron 29 of 34) -638982 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 259.167-3 chr17 70832016 70832647 + 0.833333 NA Intergenic L2a|LINE|L2 369848 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 224.5 chr1 82682910 82683376 + 0.833333 NA Intergenic Intergenic -220040 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 197.667-24 chr15 90865286 90865702 + 0.833333 NA Intergenic AluSx|SINE|Alu -3094 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding 180.333-3 chr1 52748027 52748275 + 0.833333 NA intron (NM_024646, intron 1 of 13) MIR|SINE|MIR 21698 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 263.5-7 chr13 105465436 105465843 + 0.833333 NA promoter-TSS (NM_001161814) promoter-TSS (NM_001161814) -228 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 212.5-15 chr14 72463312 72463793 + 0.833333 NA intron (NM_001370288, intron 6 of 16) intron (NM_001370288, intron 6 of 16) -53268 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 256 chr1 105266618 105267107 + 0.833333 NA Intergenic Intergenic 352073 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 183.667-14 chr14 69056301 69056643 + 0.833333 NA intron (NM_003861, intron 8 of 8) intron (NM_003861, intron 8 of 8) 76790 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 196-16 chr18 48022799 48023067 + 0.833333 NA Intergenic MER91B|DNA|hAT-Tip100 -91787 NM_001135937 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 309-13 chr2 83904639 83905366 + 0.833333 NA Intergenic L1MEd|LINE|L1 382188 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 233.833-13 chr3 12175570 12176078 + 0.833333 NA intron (NM_133625, intron 10 of 12) intron (NM_133625, intron 10 of 12) -16912 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 188.333-10 chr11 133611337 133611766 + 0.833333 NA Intergenic MLT1G|LTR|ERVL-MaLR -79050 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 275.5-15 chr2 140921351 140921974 + 0.833333 NA intron (NM_018557, intron 21 of 90) intron (NM_018557, intron 21 of 90) -334977 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 330.333-10 chr7 81186728 81187638 + 0.833333 NA Intergenic HAL1|LINE|L1 -264794 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 163.5-34 chr4 58105999 58106446 + 0.833333 NA Intergenic LTR86C|LTR|ERVL 430106 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 225.333-37 chr8 117392391 117392739 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -128148 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 166.167-28 chr4 14373639 14373839 + 0.833333 NA Intergenic Intergenic 261771 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 292.5-17 chr4 131106065 131106624 + 0.833333 NA Intergenic Intergenic -658494 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 225.667-23 chr20 9884048 9884325 + 0.833333 NA Intergenic Intergenic -45110 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 168.333-29 chr19 43789797 43790148 + 0.833333 NA Intergenic AluJr|SINE|Alu -8999 NM_002250 3783 Hs.10082 NM_002250 ENSG00000104783 KCNN4 DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4 potassium calcium-activated channel subfamily N member 4 protein-coding 196.5-43 chr7 117727255 117727541 + 0.833333 NA intron (NM_001363351, intron 17 of 22) AluJr|SINE|Alu 144822 NM_001363349 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 169-46 chr7 5561575 5561786 + 0.833333 NA Intergenic Intergenic -31079 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 189-8 chr10 33082808 33083236 + 0.833333 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 33785 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 192.833-10 chr14 45364660 45364944 + 0.833333 NA Intergenic Intergenic -111600 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 198.5-38 chr6 36895224 36895631 + 0.833333 NA intron (NM_001286635, intron 2 of 8) intron (NM_001286635, intron 2 of 8) 9475 NM_152734 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 246.667-26 chr8 122385072 122385543 + 0.833333 NA Intergenic MIR|SINE|MIR 183337 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 169.833-44 chrX 56726594 56726834 + 0.833333 NA Intergenic Intergenic -2529 NM_001348129 550643 Hs.355559 NM_001348129 ENSG00000204272 NBDY LINC01420|NoBody negative regulator of P-body association protein-coding 177-26 chr4 7856232 7856601 + 0.833333 NA intron (NM_198595, intron 3 of 16) AluY|SINE|Alu 15892 NM_001371090 292.667-10 chr2 62842645 62843559 + 0.833333 NA intron (NM_001142615, intron 7 of 22) intron (NM_001142615, intron 7 of 22) 136205 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 205-6 chr11 126972333 126972737 + 0.833333 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) 16007 NR_036126 100422918 NR_036126 ENSG00000266215 MIR3167 - microRNA 3167 ncRNA 193.833-19 chr3 4750371 4750839 + 0.833333 NA intron (NR_004428, intron 1 of 1) intron (NR_004428, intron 1 of 1) 985 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 173-4 chr1 67070744 67071146 + 0.833333 NA Intergenic AluSq2|SINE|Alu -16797 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 249.167-20 chr21 43200225 43200710 + 0.833333 NA Intergenic MER31B|LTR|ERV1 30231 NM_001363766 1409 Hs.184085 NM_000394 ENSG00000160202 CRYAA CRYA1|CTRCT9|HSPB4 crystallin alpha A protein-coding 194.667-15 chr12 28258022 28258322 + 0.833333 NA intron (NM_001352082, intron 3 of 13) intron (NM_001352082, intron 3 of 13) -67434 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 164.667-47 chr6 26583526 26583799 + 0.833333 NA Intergenic L2|LINE|L2 -13291 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 209.833-21 chr5 143629635 143630100 + 0.833333 NA Intergenic Intergenic -49993 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 175.667-48 chr7 8007996 8008206 + 0.833333 NA intron (NM_138426, intron 2 of 7) L1MA8|LINE|L1 39305 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 299.167-15 chr3 137792821 137793299 + 0.833333 NA Intergenic UCON40|Unknown|Unknown 21149 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 238.833-17 chr8 120943065 120943538 + 0.833333 NA Intergenic Intergenic -131255 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 192.333-41 chr5 19608372 19608619 + 0.833333 NA intron (NM_001349559, intron 6 of 12) intron (NM_001349559, intron 6 of 12) 277777 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 249.5-8 chr2 33415949 33416281 + 0.833333 NA Intergenic Charlie7|DNA|hAT-Charlie -2401 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 249.167-4 chr13 73328811 73329311 + 0.833333 NA Intergenic MER33|DNA|hAT-Charlie -235183 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 197.333-27 chr3 60316989 60317489 + 0.833333 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -236330 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 226.833-13 chr3 72887356 72887997 + 0.833333 NA promoter-TSS (NR_138564) promoter-TSS (NR_138564) -370 NM_001080393 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 293.667-14 chr20 56077990 56078399 + 0.833333 NA Intergenic Intergenic -72675 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 178.833-27 chr3 908383 908850 + 0.833333 NA Intergenic Intergenic -184408 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 254.167-16 chr2 86195011 86195664 + 0.833333 NA intron (NM_006839, intron 1 of 14) CpG 433 NM_001100169 10989 Hs.148559 NM_006839 ENSG00000132305 IMMT HMP|MICOS60|MINOS2|Mic60|P87|P87/89|P89|PIG4|PIG52 inner membrane mitochondrial protein protein-coding 343.667-16 chr6 168152983 168153513 + 0.833333 NA Intergenic Intergenic -71691 NR_110312 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 178.333-6 chr10 53784120 53784515 + 0.833333 NA Intergenic AluSx3|SINE|Alu -701913 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 170.833-25 chr4 44196039 44196286 + 0.833333 NA intron (NM_198353, intron 1 of 1) MER45B|DNA|hAT-Tip100 179100 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 230.167-5 chr1 203128071 203128576 + 0.833333 NA 5' UTR (NM_000674, exon 2 of 4) 5' UTR (NM_000674, exon 2 of 4) 597 NM_000674 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 203.833-22 chr6 56590932 56591310 + 0.833333 NA intron (NM_001144770, intron 41 of 94) intron (NM_001144770, intron 41 of 94) 51768 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 318.167-4 chr13 94657056 94657642 + 0.833333 NA Intergenic Tigger4|DNA|TcMar-Tigger 51137 NR_120417 101927248 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 200-8 chr11 16791692 16792098 + 0.833333 NA intron (NM_001329631, intron 19 of 22) intron (NM_001329631, intron 19 of 22) 53248 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 181.167-22 chr21 33016053 33016493 + 0.833333 NA Intergenic Intergenic -9662 NM_005806 10215 Hs.176977 NM_005806 ENSG00000205927 OLIG2 BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19 oligodendrocyte transcription factor 2 protein-coding 179.833-27 chr6 46655928 46656163 + 0.833333 NA intron (NM_001204051, intron 2 of 8) intron (NM_001204051, intron 2 of 8) 3070 NM_001204051 9481 Hs.40510 NM_004277 ENSG00000153291 SLC25A27 UCP4 solute carrier family 25 member 27 protein-coding 287-18 chr2 86635461 86635886 + 0.833333 NA intron (NM_001198954, intron 2 of 7) L1ME4a|LINE|L1 -11796 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 254.833-16 chr5 89930500 89930880 + 0.833333 NA Intergenic Intergenic 86030 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 262.833-3 chr11 12700320 12700780 + 0.833333 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 26129 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 265.167-7 chr18 21042451 21042825 + 0.833333 NA exon (NM_005406, exon 7 of 33) exon (NM_005406, exon 7 of 33) 69175 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 401.167-7 chr6 149335061 149335795 + 0.833333 NA intron (NM_015093, intron 1 of 8) AluJo|SINE|Alu 17128 NM_015093 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 175.667-3 chr1 81042918 81043188 + 0.833333 NA Intergenic MADE1|DNA|TcMar-Mariner -263139 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 351.167-7 chr8 23692360 23692873 + 0.833333 NA Intergenic Intergenic -9678 NR_046072 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 197.833-25 chr4 53702416 53702791 + 0.833333 NA intron (NR_125918, intron 1 of 2) intron (NR_125918, intron 1 of 2) 6702 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 298.333-8 chr15 57010986 57011604 + 0.833333 NA intron (NM_001322164, intron 3 of 19) MSTB|LTR|ERVL-MaLR 91850 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 339.5-13 chr5 87399310 87399882 + 0.833333 NA intron (NR_157069, intron 5 of 8) intron (NR_157069, intron 5 of 8) 13308 NM_001199189 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 198-19 chr2 40488652 40488901 + 0.833333 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 23659 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 188.667-29 chr22 40644789 40645310 + 0.833333 NA Intergenic Intergenic -8330 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 190.833-20 chr4 53652906 53653381 + 0.833333 NA Intergenic MIRb|SINE|MIR -42758 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 256.167-2 chr1 20945457 20945887 + 0.833333 NA intron (NM_003760, intron 8 of 31) AluJb|SINE|Alu 42760 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 204.167-22 chr8 30752957 30753457 + 0.833333 NA intron (NM_001282199, intron 3 of 6) intron (NM_001282199, intron 3 of 6) 9042 NM_001282189 7993 Hs.153678 NM_005671 ENSG00000104691 UBXN8 D8S2298E|REP8|UBXD6 UBX domain protein 8 protein-coding 204.667-33 chr5 3980071 3980434 + 0.833333 NA Intergenic Intergenic 384420 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 195.667-31 chr4 67079295 67079760 + 0.833333 NA Intergenic Intergenic 342473 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 164.5-55 chr8 130208773 130208998 + 0.833333 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 87648 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 165-4 chr10 24108523 24108791 + 0.833333 NA intron (NM_001098500, intron 2 of 18) L3|LINE|CR1 -100134 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 193.167-5 chr12 23275938 23276278 + 0.833333 NA Intergenic L1ME5|LINE|L1 100472 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 195.333-25 chr6 38025218 38025545 + 0.833333 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 205654 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 187-9 chr11 11607628 11608084 + 0.833333 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) 14149 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 181-25 chr2 102033557 102033866 + 0.833333 NA Intergenic Intergenic 34750 NR_048564 7850 Hs.25333 NM_004633 ENSG00000115590 IL1R2 CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB interleukin 1 receptor type 2 protein-coding 227-25 chr5 35924026 35924693 + 0.833333 NA intron (NM_144647, intron 1 of 4) MIR3|SINE|MIR 14263 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 195.833-3 chr10 88386597 88386947 + 0.833333 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 196546 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 248.5 chr1 8351642 8352124 + 0.833333 NA TTS (NM_012102) TTS (NM_012102) 33798 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5|IDDNPF solute carrier family 45 member 1 protein-coding 197.833-33 chr8 85311913 85312184 + 0.833333 NA Intergenic L2c|LINE|L2 29666 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 212.833-4 chr1 113565317 113565864 + 0.833333 NA intron (NM_001142782, intron 2 of 20) MER99|DNA|hAT? 175075 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 255-2 chr1 70451170 70451618 + 0.833333 NA Intergenic Intergenic 40126 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 299-21 chr7 33142527 33143085 + 0.833333 NA intron (NM_001348044, intron 1 of 18) L1MB2|LINE|L1 13242 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 170.5-2 chr1 113234050 113234281 + 0.833333 NA Intergenic L1MD2|LINE|L1 -27912 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 191.667-45 chr8 70244289 70244692 + 0.833333 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 158900 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 172.5-16 chr15 77224388 77224720 + 0.833333 NA non-coding (NR_026813, exon 1 of 1) non-coding (NR_026813, exon 1 of 1) 850 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 286.833-11 chr7 37324513 37325030 + 0.833333 NA intron (NM_001206480, intron 2 of 21) AluJr|SINE|Alu 28897 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 212-12 chr11 5432488 5432940 + 0.833333 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 8839 NM_001005288 390063 Hs.553732 NM_001005288 ENSG00000167359 OR51I1 - olfactory receptor family 51 subfamily I member 1 protein-coding 194.5-25 chr17 43762260 43762699 + 0.833333 NA Intergenic Intergenic -3688 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 202.5-20 chr14 35153714 35154042 + 0.833333 NA intron (NM_014672, intron 4 of 7) intron (NM_014672, intron 4 of 7) 31326 NM_014672 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 225.833-3 chr1 99640460 99640846 + 0.833333 NA intron (NR_031666, intron 1 of 4) L2a|LINE|L2 -5460 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 260.667-41 chr5 67174566 67175021 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie 22006 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 187.167-9 chr11 134190646 134191004 + 0.833333 NA intron (NM_015261, intron 16 of 34) L1MEd|LINE|L1 33707 NM_015261 23310 Hs.438550 NM_015261 ENSG00000151503 NCAPD3 CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex subunit D3 protein-coding 209.167-2 chr1 65686877 65687266 + 0.833333 NA Intergenic Intergenic -105439 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 163.833-22 chr18 55806988 55807442 + 0.833333 NA Intergenic MIRb|SINE|MIR -25490 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 184.333-47 chrX 3962395 3962646 + 0.833333 NA Intergenic Intergenic -41778 NR_146579 729162 Hs.657302 NR_146578 FAM239B - zinc finger protein 839 pseudogene pseudo 256.667-25 chr7 38706106 38706807 + 0.833333 NA Intergenic MER99|DNA|hAT? -19367 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 225.5-32 chr8 142727174 142727494 + 0.833333 NA promoter-TSS (NR_038925) promoter-TSS (NR_038925) 111 NR_156431 51337 Hs.368402 NM_016647 ENSG00000130193 THEM6 C8orf55|DSCD75 thioesterase superfamily member 6 protein-coding 191.833-18 chr3 105370012 105370579 + 0.833333 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 3386 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 191.833-17 chr3 36638648 36639098 + 0.833333 NA Intergenic Intergenic 100988 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 368.5-12 chr5 19592253 19592940 + 0.833333 NA intron (NM_001349559, intron 6 of 12) intron (NM_001349559, intron 6 of 12) 293676 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 278.833-7 chr14 77800074 77800545 + 0.833333 NA intron (NR_158988, intron 1 of 10) CpG 200 NR_158988 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 178.167-16 chr22 17540699 17540931 + 0.833333 NA intron (NM_001290046, intron 14 of 18) intron (NM_001290046, intron 14 of 18) -22624 NM_001303484 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 170.833-27 chr5 17349042 17349249 + 0.833333 NA Intergenic Intergenic 38165 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 205-17 chr20 31355684 31356294 + 0.833333 NA Intergenic AluJo|SINE|Alu -12612 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 176.667-59 chrX 86137932 86138387 + 0.833333 NA Intergenic Intergenic -10292 NM_053281 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 167.5-37 chr6 75288030 75288302 + 0.833333 NA intron (NR_040081, intron 1 of 2) intron (NR_040081, intron 1 of 2) 3152 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 259-2 chr1 120176475 120176907 + 0.833333 NA promoter-TSS (NM_004892) promoter-TSS (NM_004892) -171 NM_004892 9554 Hs.632438 NM_004892 ENSG00000265808 SEC22B ERS-24|SEC22L1 SEC22 homolog B, vesicle trafficking protein (gene/pseudogene) protein-coding 166.5-10 chr12 44574860 44575154 + 0.833333 NA intron (NM_006159, intron 16 of 20) L2a|LINE|L2 300654 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 240.167-11 chr2 43995988 43996396 + 0.833333 NA promoter-TSS (NM_133259) promoter-TSS (NM_133259) -203 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 286.667-5 chr10 117501961 117502457 + 0.833333 NA intron (NR_002791, intron 2 of 3) MIR3|SINE|MIR -40236 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 210.167-36 chr9 118261869 118262331 + 0.833333 NA Intergenic L1MA6|LINE|L1 -417571 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 270.5-35 chr8 86825687 86826109 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -40517 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 310.667-6 chr18 73638915 73639332 + 0.833333 NA Intergenic Intergenic 314182 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 164.167-40 chr5 57611353 57611591 + 0.833333 NA intron (NR_120607, intron 4 of 5) MIRc|SINE|MIR -39188 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 256-32 chr9 76307064 76307703 + 0.833333 NA intron (NM_001190482, intron 27 of 36) intron (NM_001190482, intron 27 of 36) 87043 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 298.167-10 chr4 84504921 84505294 + 0.833333 NA Intergenic Intergenic -6873 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 170.667-14 chr17 39636995 39637372 + 0.833333 NA promoter-TSS (NM_006804) promoter-TSS (NM_006804) 39 NM_006804 10948 Hs.728838 NM_006804 ENSG00000131748 STARD3 CAB1|MLN64|es64 StAR related lipid transfer domain containing 3 protein-coding 185-22 chr15 61701967 61702264 + 0.833333 NA Intergenic Intergenic -27803 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 194.667-24 chr16 72266187 72266441 + 0.833333 NA Intergenic AluSc8|SINE|Alu -93864 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 167-43 chr8 143362407 143362667 + 0.833333 NA Intergenic AluSc8|SINE|Alu -2560 NM_001258447 116447 Hs.528574 NM_052963 ENSG00000184428 TOP1MT - DNA topoisomerase I mitochondrial protein-coding 204.5-13 chr14 71247034 71247467 + 0.833333 NA Intergenic Intergenic -73226 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 236.5-35 chr9 127987326 127987886 + 0.833333 NA Intergenic L1MC5a|LINE|L1 -6617 NM_001035254 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 291.667-8 chr2 101657509 101658118 + 0.833333 NA Intergenic AluSz6|SINE|Alu -39890 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 179-18 chr17 17439829 17440211 + 0.833333 NA Intergenic Intergenic -36980 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 189.667-35 chr3 182907924 182908277 + 0.833333 NA intron (NM_014616, intron 28 of 29) intron (NM_014616, intron 28 of 29) 72438 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 202.167-2 chr1 117552393 117552805 + 0.833333 NA Intergenic L1P4|LINE|L1 53171 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 347-20 chr3 186801600 186802641 + 0.833333 NA intron (NM_181573, intron 2 of 10) AluSx|SINE|Alu 4362 NM_002916 5984 Hs.732098 NM_002916 ENSG00000163918 RFC4 A1|RFC37 replication factor C subunit 4 protein-coding 322.5-5 chr13 49584748 49585345 + 0.833333 NA intron (NR_148016, intron 1 of 13) intron (NR_148016, intron 1 of 13) 512 NM_018191 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 258.333-25 chr9 34254385 34254816 + 0.833333 NA intron (NM_194313, intron 12 of 12) intron (NM_194313, intron 12 of 12) 74668 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 188-5 chr10 10794232 10794644 + 0.833333 NA intron (NR_027082, intron 1 of 3) intron (NR_027082, intron 1 of 3) 476 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 179-14 chr12 133036133 133036465 + 0.833333 NA promoter-TSS (NM_003428) promoter-TSS (NM_003428) 923 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 191.167-13 chr18 11088447 11088689 + 0.833333 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 60194 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 231-34 chr9 136848960 136849430 + 0.833333 NA non-coding (NR_109807, exon 1 of 3) non-coding (NR_109807, exon 1 of 3) 379 NM_001135861 29085 Hs.409834 NM_014172 ENSG00000054148 PHPT1 CGI-202|HEL-S-132P|HSPC141|PHP|PHP14 phosphohistidine phosphatase 1 protein-coding 251.833-11 chr4 69798596 69798990 + 0.833333 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -38173 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 254.5-26 chr3 124079496 124079927 + 0.833333 NA Intergenic L3|LINE|CR1 -14970 NM_001024660 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 262.833-15 chr7 84488389 84488804 + 0.833333 NA Intergenic Intergenic -43880 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 221.667-18 chr17 79589074 79589475 + 0.833333 NA intron (NM_001350451, intron 1 of 14) MLT1C|LTR|ERVL-MaLR 21777 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 199.167-19 chr21 21751970 21752342 + 0.833333 NA intron (NR_109958, intron 2 of 4) intron (NR_109958, intron 2 of 4) 5171 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 265.833-17 chr7 106077027 106077407 + 0.833333 NA Intergenic L1ME3F|LINE|L1 35095 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 166.167-30 chr4 97984794 97985126 + 0.833333 NA intron (NM_174952, intron 5 of 10) L1MC4|LINE|L1 158516 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 201-13 chr16 52082940 52083342 + 0.833333 NA TTS (NR_038233) TTS (NR_038233) 1968 NR_038233 100505619 Hs.535454 NR_038233 ENSG00000260268 LINC00919 - long intergenic non-protein coding RNA 919 ncRNA 169.833-28 chr3 4972434 4972847 + 0.833333 NA intron (NR_125915, intron 1 of 3) L1ME2|LINE|L1 -6797 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 268.167-3 chr1 207129707 207130291 + 0.833333 NA intron (NM_000715, intron 7 of 11) L1M4b|LINE|L1 25766 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 202.333-10 chr11 97080975 97081275 + 0.833333 NA Intergenic Intergenic 572700 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 344.167-2 chr11 68965646 68966276 + 0.833333 NA Intergenic Intergenic 15025 NM_198923 116512 Hs.527802 NM_198923 ENSG00000172938 MRGPRD MRGD|TGR7 MAS related GPR family member D protein-coding 255.167-2 chr1 69951885 69952435 + 0.833333 NA intron (NM_001370785, intron 8 of 26) intron (NM_001370785, intron 8 of 26) 32838 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 318.5-18 chr8 122669567 122670193 + 0.833333 NA TTS (NR_126348) TTS (NR_126348) 24226 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 224.667-21 chr19 1929550 1929968 + 0.833333 NA Intergenic Intergenic -11413 NM_001319 1455 Hs.651905 NM_001319 ENSG00000133275 CSNK1G2 CK1g2 casein kinase 1 gamma 2 protein-coding 264.833-15 chr2 112749606 112750196 + 0.833333 NA intron (NR_130712, intron 6 of 9) LTR50|LTR|ERVL 14708 NM_001304361 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 171.333-49 chr7 45871991 45872278 + 0.833333 NA Intergenic Intergenic -16354 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 194.333-27 chr3 71158895 71159352 + 0.833333 NA intron (NR_146142, intron 6 of 19) AluJo|SINE|Alu -26926 NM_001349342 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 339.333-10 chr3 5240779 5241340 + 0.833333 NA Intergenic Intergenic 9196 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 216-42 chr6 46088208 46088747 + 0.833333 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) -8129 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 242.667-17 chr20 2250227 2250705 + 0.833333 NA Intergenic Intergenic 43538 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 225.667-4 chr10 31754887 31755270 + 0.833333 NA Intergenic Intergenic 153848 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 204.5-27 chr4 48112904 48113230 + 0.833333 NA intron (NM_003328, intron 3 of 14) L2b|LINE|L2 21183 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 200.333-36 chr6 132370208 132370823 + 0.833333 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 30960 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 207.167-22 chr6 14167331 14167642 + 0.833333 NA Intergenic Intergenic 49714 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 185.333-63 chrY 11325708 11326035 + 0.833333 NA Intergenic BSR/Beta|Satellite|Satellite 1095719 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 185.667-15 chr12 28466162 28466489 + 0.833333 NA intron (NM_001352082, intron 12 of 13) L1MA2|LINE|L1 -275587 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 227.667-21 chr19 50333648 50334134 + 0.833333 NA promoter-TSS (NR_110912) promoter-TSS (NR_110912) -355 NR_110912 3748 Hs.467146 NM_004977 ENSG00000131398 KCNC3 KSHIIID|KV3.3|SCA13 potassium voltage-gated channel subfamily C member 3 protein-coding 254-16 chr2 139113939 139114515 + 0.833333 NA Intergenic Intergenic 216903 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 177.333-9 chr14 68138631 68139122 + 0.833333 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 315284 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 211.5-3 chr1 155170636 155170999 + 0.833333 NA intron (NM_173852, intron 3 of 4) AluJo|SINE|Alu 2511 NM_173852 200185 Hs.516671 NM_173852 ENSG00000163463 KRTCAP2 KCP2 keratinocyte associated protein 2 protein-coding 212.333-35 chr8 28120185 28120678 + 0.833333 NA intron (NM_018091, intron 7 of 14) L1ME2z|LINE|L1 27292 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 180.167-4 chr10 23737825 23738209 + 0.833333 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 43290 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 187.5-16 chr13 96959630 96960018 + 0.833333 NA intron (NR_051966, intron 1 of 2) L1MEd|LINE|L1 24348 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 178.333 chr1 55143825 55144123 + 0.833333 NA intron (NM_015306, intron 21 of 67) intron (NM_015306, intron 21 of 67) 71390 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 258.833-20 chr8 132675436 132675946 + 0.833333 NA promoter-TSS (NM_001321963) promoter-TSS (NM_001321963) -146 NM_001321961 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 201-37 chr5 143230001 143230338 + 0.833333 NA Intergenic Intergenic 37669 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 198.333-11 chr10 114834353 114834832 + 0.833333 NA intron (NM_001135051, intron 3 of 16) intron (NM_001135051, intron 3 of 16) 12812 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 178.167-21 chr4 59709458 59709854 + 0.833333 NA Intergenic Intergenic 696083 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 165.5-40 chr7 25017033 25017311 + 0.833333 NA Intergenic Intergenic -36994 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 176.167-10 chr12 96015623 96015924 + 0.833333 NA intron (NR_132659, intron 10 of 18) intron (NR_132659, intron 10 of 18) -19408 NM_001258333 3034 Hs.190783 NM_002108 ENSG00000084110 HAL HIS|HSTD histidine ammonia-lyase protein-coding 225.333-34 chr8 30382075 30382488 + 0.833333 NA non-coding (NR_046205, exon 3 of 3) non-coding (NR_046205, exon 3 of 3) -2220 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 297.167-2 chr1 110781983 110782858 + 0.833333 NA Intergenic Intergenic -88779 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 251.5-26 chr7 105012948 105013451 + 0.833333 NA promoter-TSS (NM_018682) promoter-TSS (NM_018682) 942 NR_024586 100216545 Hs.631150 NR_024586 KMT2E-AS1 - KMT2E antisense RNA 1 ncRNA 255.833-19 chr7 38279740 38280165 + 0.833333 NA Intergenic Intergenic -6305 NM_001003799 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 204.5-16 chr17 69433005 69433536 + 0.833333 NA intron (NM_002758, intron 1 of 11) MIR3|SINE|MIR 18573 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 193.5-26 chr2 218877165 218877500 + 0.833333 NA Intergenic Intergenic -3520 NM_025216 80326 Hs.121540 NM_025216 ENSG00000135925 WNT10A OODD|SSPS|STHAG4 Wnt family member 10A protein-coding 254.5-33 chr8 91144091 91144429 + 0.833333 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) 41641 NM_001129890 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 256.333-11 chr16 75158214 75158683 + 0.833333 NA intron (NM_001318471, intron 3 of 4) AluYc|SINE|Alu 9397 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 250.333-3 chr1 73201569 73202010 + 0.833333 NA Intergenic L1M4c|LINE|L1 -104381 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 203.833-18 chr4 120459507 120459920 + 0.833333 NA Intergenic Intergenic -392865 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 217-10 chr16 4957788 4958194 + 0.833333 NA promoter-TSS (NM_014692) promoter-TSS (NM_014692) -339 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 233.167-3 chr1 223113442 223113815 + 0.833333 NA intron (NM_003268, intron 5 of 5) intron (NM_003268, intron 5 of 5) 29620 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 169.833-39 chr6 82244937 82245206 + 0.833333 NA intron (NM_015525, intron 1 of 28).2 L2c|LINE|L2 2673 NM_001300906 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 199.667-48 chr8 130421219 130421562 + 0.833333 NA intron (NM_001362925, intron 1 of 29) MLT1J2|LTR|ERVL-MaLR 22270 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 200-11 chr13 100733019 100733329 + 0.833333 NA intron (NR_047687, intron 1 of 7) L1PA16|LINE|L1 24849 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 179.167-10 chr17 17925094 17925352 + 0.833333 NA intron (NM_001288787, intron 1 of 13) MSTA|LTR|ERVL-MaLR 47177 NM_001350333 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 167.833-35 chr4 120941857 120942186 + 0.833333 NA Intergenic L1ME3G|LINE|L1 -19155 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 183.333-43 chr3 34550882 34551176 + 0.833333 NA Intergenic MER3|DNA|hAT-Charlie 752399 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 261.333-14 chr5 94631071 94631651 + 0.833333 NA intron (NM_032290, intron 4 of 20) L1ME2|LINE|L1 12692 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 179.833-13 chr16 64107802 64108263 + 0.833333 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 1014031 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 211.5-2 chr1 153671285 153671675 + 0.833333 NA promoter-TSS (NM_001267809) promoter-TSS (NM_001267809) -452 NM_001267809 3608 Hs.75117 NM_004515 ENSG00000143621 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding 247.667-12 chr16 75860218 75860699 + 0.833333 NA Intergenic Intergenic -133968 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 276.333-15 chr8 67273786 67274356 + 0.833333 NA intron (NM_006421, intron 9 of 38) L2b|LINE|L2 69710 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 296.666-7 chr20 14986058 14986557 + 0.833333 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -56789 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 194.667-19 chr13 112952459 112952838 + 0.833333 NA Intergenic Intergenic 15990 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 188-2 chr1 80214977 80215202 + 0.833333 NA Intergenic HAL1|LINE|L1 -320666 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 213.167-3 chr1 198805043 198805486 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR 53718 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 195.833-21 chr3 146166503 146166906 + 0.833333 NA Intergenic Intergenic -5209 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 469.333-4 chr22 35223940 35224722 + 0.833333 NA intron (NR_126356, intron 1 of 5) MIR|SINE|MIR 6725 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 170.333-31 chr2 181751801 181752042 + 0.833333 NA Intergenic Intergenic -71256 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 247.833-11 chr2 99483969 99484438 + 0.833333 NA intron (NR_135652, intron 1 of 21) L1PREC2|LINE|L1 5814 NM_001037872 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 278.167-21 chr5 30982934 30983327 + 0.833333 NA Intergenic Intergenic -210556 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 170.333-52 chr7 2864177 2864444 + 0.833333 NA Intergenic MIRc|SINE|MIR -20002 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 266.833-6 chr14 104650043 104650529 + 0.833333 NA Intergenic CpG 15272 NR_135293 101929634 Hs.532502 NR_135293 ENSG00000260792 LINC02280 - long intergenic non-protein coding RNA 2280 ncRNA 333.333-6 chr15 69410223 69410947 + 0.833333 NA intron (NR_132969, intron 1 of 1) intron (NR_132969, intron 1 of 1) -3764 NR_160296 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 224.833-19 chr4 95636865 95637453 + 0.833333 NA Intergenic Intergenic -88186 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 291.333-22 chr8 93223679 93224147 + 0.833333 NA Intergenic Intergenic -57063 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 216-33 chr3 138419057 138419439 + 0.833333 NA Intergenic Intergenic -15325 NR_136409 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 189-34 chr3 117127651 117127938 + 0.833333 NA Intergenic Intergenic 206363 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 268.667-8 chr14 64839009 64839481 + 0.833333 NA intron (NM_001355436, intron 1 of 35) L1ME1|LINE|L1 -15865 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 194-9 chr10 125427157 125427474 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -147056 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 201.167-30 chr8 108547969 108548397 + 0.833333 NA Intergenic Intergenic 104559 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 178.167-17 chr22 45538598 45538896 + 0.833333 NA intron (NM_006487, intron 8 of 14) intron (NM_006487, intron 8 of 14) 35864 NM_006485 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 173.833-2 chr1 50703846 50704148 + 0.833333 NA intron (NM_007051, intron 7 of 18) intron (NM_007051, intron 7 of 18) 256270 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 198.667-36 chr5 43017573 43018042 + 0.833333 NA non-coding (NR_034086, exon 1 of 2) non-coding (NR_034086, exon 1 of 2) 1004 NR_034085 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 175-24 chr2 28203999 28204278 + 0.833333 NA intron (NR_120504, intron 1 of 2) intron (NR_120504, intron 1 of 2) 2823 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 234-28 chr4 67922662 67923145 + 0.833333 NA exon (NM_182606, exon 7 of 10) exon (NM_182606, exon 7 of 10) -38901 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 198.167-5 chr10 64687872 64688281 + 0.833333 NA Intergenic Intergenic -137452 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 193.333-15 chr13 44978206 44978567 + 0.833333 NA intron (NM_012345, intron 5 of 9) intron (NM_012345, intron 5 of 9) 11085 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 193.833-17 chr19 28711743 28712085 + 0.833333 NA intron (NR_110759, intron 5 of 9) L1MC5a|LINE|L1 15780 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 261.5-3 chr1 73795186 73795561 + 0.833333 NA Intergenic Intergenic 120694 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 166 chr1 52902083 52902293 + 0.833333 NA intron (NM_001319958, intron 7 of 9) AluSz6|SINE|Alu 19552 NM_001319958 55268 Hs.476319 NM_018281 ENSG00000121310 ECHDC2 - enoyl-CoA hydratase domain containing 2 protein-coding 184-29 chr2 64757052 64757619 + 0.833333 NA Intergenic Intergenic -103422 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 244.333-9 chr15 44207985 44208430 + 0.833333 NA Intergenic L1MEd|LINE|L1 -12913 NR_104455 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 198.833-30 chr8 20493758 20494166 + 0.833333 NA Intergenic Intergenic 120964 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 227.5-19 chr2 152088489 152088897 + 0.833333 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 10070 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 168.667-33 chr4 36480036 36480395 + 0.833333 NA Intergenic L1MD3|LINE|L1 -53787 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 204.167-26 chr9 133030716 133030986 + 0.833333 NA promoter-TSS (NR_135119) promoter-TSS (NR_135119) -146 NM_001122823 9328 Hs.495417 NM_012087 ENSG00000148308 GTF3C5 TFIIIC63|TFIIICepsilon|TFiiiC2-63 general transcription factor IIIC subunit 5 protein-coding 280.667-5 chr11 35786361 35787039 + 0.833333 NA intron (NM_017583, intron 4 of 4) intron (NM_017583, intron 4 of 4) 123925 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 190.833-3 chr10 2473760 2474217 + 0.833333 NA intron (NR_136146, intron 1 of 2) THE1B|LTR|ERVL-MaLR 27474 NR_136146 105376351 Hs.343482 NR_136146 LINC02645 - long intergenic non-protein coding RNA 2645 ncRNA 175.167-16 chr15 87547887 87548197 + 0.833333 NA Intergenic LTR78B|LTR|ERV1 -28887 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 234.167-26 chr7 147491824 147492260 + 0.833333 NA intron (NM_014141, intron 10 of 22) intron (NM_014141, intron 10 of 22) -113921 NR_031645 100313895 NR_031645 ENSG00000221442 MIR548F4 MIR548F-4|MIRN548F4|hsa-mir-548f-4 microRNA 548f-4 ncRNA 183.5-28 chr3 68231506 68231895 + 0.833333 NA intron (NM_001252216, intron 2 of 4) L1MB8|LINE|L1 227453 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 196.333-11 chr12 44499566 44499892 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 375932 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 199.5-36 chr4 78783023 78783396 + 0.833333 NA intron (NM_017593, intron 1 of 13) intron (NM_017593, intron 1 of 13) 6831 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 228.333-32 chr9 29001992 29002444 + 0.833333 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -113263 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 277-26 chr6 76191248 76192000 + 0.833333 NA Intergenic Intergenic -118946 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 203.5-5 chr11 2238384 2238755 + 0.833333 NA Intergenic L1MC3|LINE|L1 32383 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 199.167-26 chr7 40764003 40764274 + 0.833333 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 215801 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 233.833-20 chr7 101729596 101729890 + 0.833333 NA Intergenic Intergenic -86264 NM_001202543 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 443-4 chr2 46915198 46916035 + 0.833333 NA promoter-TSS (NM_001288953) promoter-TSS (NM_001288953) 190 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 196.833-25 chr6 127118899 127119304 + 0.833333 NA 5' UTR (NM_032784, exon 1 of 5) 5' UTR (NM_032784, exon 1 of 5) 430 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 199.833-21 chr3 88231677 88232035 + 0.833333 NA Intergenic Intergenic 81897 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 210.833-13 chr17 74629485 74629861 + 0.833333 NA Intergenic FAM|SINE|Alu -5935 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 166.833-28 chr5 150095722 150096065 + 0.833333 NA intron (NM_005211, intron 1 of 21) L1ME1|LINE|L1 -3269 NM_001349736 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 287.5-9 chr2 11199539 11199950 + 0.833333 NA intron (NM_001321643, intron 23 of 32) intron (NM_001321643, intron 23 of 32) 44277 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 227.833-4 chr10 80068380 80068809 + 0.833333 NA intron (NR_027432, intron 1 of 3) MER4B-int|LTR|ERV1 -10052 NM_001270371 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 289.167-8 chr16 2027631 2028298 + 0.833333 NA intron (NM_004785, intron 1 of 6) intron (NM_004785, intron 1 of 6) 1062 NM_004785 9351 Hs.440896 NM_004785 ENSG00000065054 SLC9A3R2 E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1 SLC9A3 regulator 2 protein-coding 396.834-3 chr2 112323340 112324228 + 0.833333 NA intron (NM_198581, intron 9 of 11) intron (NM_198581, intron 9 of 11) 48187 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 176.833-24 chr22 18157060 18157279 + 0.833333 NA intron (NM_017414, intron 1 of 10) L1M3e|LINE|L1 6999 NM_017414 11274 Hs.38260 NM_017414 ENSG00000184979 USP18 ISG43|PTORCH2|UBP43 ubiquitin specific peptidase 18 protein-coding 189.667-48 chr6 151764953 151765191 + 0.833333 NA intron (NM_001122742, intron 2 of 9) Charlie5|DNA|hAT-Charlie -40601 NM_001291241 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 251.5-9 chr15 78248515 78248929 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -14157 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 236.5-6 chr11 67053657 67054059 + 0.833333 NA Intergenic Intergenic -2989 NM_014578 29984 Hs.15114 NM_014578 ENSG00000173156 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 193.5-47 chr7 53202690 53202924 + 0.833333 NA Intergenic LTR40c|LTR|ERVL 167174 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 205.667-29 chr3 166014443 166014827 + 0.833333 NA Intergenic Intergenic -177212 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 163.333-44 chr4 35137187 35137413 + 0.833333 NA Intergenic MSTA-int|LTR|ERVL-MaLR -867553 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 488.166-2 chr3 139718064 139719000 + 0.833333 NA Intergenic Intergenic -40482 NM_001200047 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 231.333-34 chr7 50743975 50744330 + 0.833333 NA intron (NM_001371008, intron 1 of 15) intron (NM_001371008, intron 1 of 15) -11799 NM_001001549 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 240-24 chr16 62729185 62729657 + 0.833333 NA Intergenic Intergenic -692983 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 245-17 chr20 170982 171377 + 0.833333 NA Intergenic L1PA15|LINE|L1 13725 NM_139074 140850 Hs.99362 NM_139074 ENSG00000088782 DEFB127 C20orf73|DEF-27|DEFB-27|DEFB27|bA530N10.2|hBD-27 defensin beta 127 protein-coding 210-36 chr5 61922117 61922448 + 0.833333 NA Intergenic Intergenic -186584 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 245.833-24 chr7 127337936 127338316 + 0.833333 NA Intergenic LTR78|LTR|ERV1 54582 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 171.167-30 chr5 38835644 38836274 + 0.833333 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 9870 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 352-3 chr11 22670764 22671763 + 0.833333 NA intron (NM_177553, intron 1 of 7) intron (NM_177553, intron 1 of 7) 3155 NM_177553 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 247.333-16 chr3 141875128 141875647 + 0.833333 NA Intergenic Intergenic -1256 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 215.333-35 chr4 33670118 33670493 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger 369588 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 258.333-8 chr2 49219152 49219662 + 0.833333 NA Intergenic L2b|LINE|L2 -64880 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 219-21 chr21 32257154 32257698 + 0.833333 NA Intergenic Intergenic 21623 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 184.833-10 chr12 39601059 39601545 + 0.833333 NA intron (NM_005164, intron 5 of 9) intron (NM_005164, intron 5 of 9) 18501 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 195.167-40 chrX 103889383 103889696 + 0.833333 NA intron (NR_146557, intron 4 of 4) intron (NR_146557, intron 4 of 4) -29357 NM_001350213 286527 Hs.675540 NM_194324 ENSG00000158427 TMSB15B TMSB15A|TMSL8|TMSNB|Tbeta15b thymosin beta 15B protein-coding 179.5-51 chr8 141735557 141735896 + 0.833333 NA Intergenic Intergenic 50587 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 199.5-11 chr12 113995876 113996280 + 0.833333 NA Intergenic LTR16A2|LTR|ERVL -29753 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 163.833-14 chr15 69456933 69457232 + 0.833333 NA TTS (NM_213725) TTS (NM_213725) 4264 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 286.333-7 chr2 157031822 157032425 + 0.833333 NA Intergenic Intergenic -225582 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 184.833-2 chr1 98087379 98087737 + 0.833333 NA Intergenic L2|LINE|L2 -37865 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 243.833-3 chr1 190415948 190416523 + 0.833333 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 59775 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 184.833-21 chr3 30438734 30439111 + 0.833333 NA Intergenic Intergenic -79946 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 170.167-24 chr2 206756952 206757232 + 0.833333 NA intron (NR_104261, intron 3 of 9) intron (NR_104261, intron 3 of 9) 8236 NM_001330224 130752 Hs.147816 NM_206892 ENSG00000138400 MDH1B RP11-95H11 malate dehydrogenase 1B protein-coding 193.167-25 chr5 66849131 66849645 + 0.833333 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 20615 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 174.167-26 chr21 27816792 27817352 + 0.833333 NA Intergenic MIR|SINE|MIR 94693 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 288-11 chr14 105028303 105028865 + 0.833333 NA Intergenic MER65B|LTR|ERV1 -7501 NM_017955 55038 Hs.34045 NM_017955 ENSG00000170779 CDCA4 HEPP|SEI-3/HEPP cell division cycle associated 4 protein-coding 293.667-22 chr6 34668014 34668407 + 0.833333 NA intron (NM_022758, intron 1 of 3) L1M5|LINE|L1 -27944 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 265.167-4 chr14 60184660 60185087 + 0.833333 NA Intergenic Intergenic -15009 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 229.333-36 chr9 16705185 16705590 + 0.833333 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -21427 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 312.833-3 chr16 69754710 69755484 + 0.833333 NA promoter-TSS (NM_014062) promoter-TSS (NM_014062) -129 NR_074074 28987 Hs.271695 NM_014062 ENSG00000141101 NOB1 ART-4|MST158|MSTP158|NOB1P|PSMD8BP1 NIN1 (RPN12) binding protein 1 homolog protein-coding 240.333-21 chr6 11617343 11617734 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 79789 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 180.833-19 chr5 24635674 24635998 + 0.833333 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 9142 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 212.667-39 chr5 96661832 96662346 + 0.833333 NA promoter-TSS (NM_001042440) promoter-TSS (NM_001042440) 52 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 292.5-21 chr8 103763437 103764035 + 0.833333 NA intron (NM_001348496, intron 3 of 23) intron (NM_001348496, intron 3 of 23) -55484 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 197.5-29 chr4 168490311 168490652 + 0.833333 NA Intergenic Intergenic -6571 NM_016081 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 163.167-5 chr1 156706103 156706511 + 0.833333 NA promoter-TSS (NM_001878) promoter-TSS (NM_001878) -491 NM_001199723 1382 Hs.405662 NM_001878 ENSG00000143320 CRABP2 CRABP-II|RBP6 cellular retinoic acid binding protein 2 protein-coding 166.333-21 chr15 69194679 69194999 + 0.833333 NA intron (NM_001324093, intron 2 of 5) intron (NM_001324093, intron 2 of 5) 34204 NM_001324093 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 186-24 chr2 106158674 106159016 + 0.833333 NA intron (NM_025076, intron 4 of 14) LTR8B|LTR|ERV1 -19964 NM_001253876 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 202.833-2 chr1 178070814 178071366 + 0.833333 NA Intergenic Intergenic 22903 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 244-5 chr14 100271320 100271805 + 0.833333 NA intron (NM_003403, intron 2 of 4) Tigger4b|DNA|TcMar-Tigger -5795 NR_106822 102466730 NR_106822 ENSG00000283840 MIR6764 hsa-mir-6764 microRNA 6764 ncRNA 212-29 chr20 63075911 63076370 + 0.833333 NA intron (NR_033370, intron 1 of 4) AluJr|SINE|Alu -25152 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 179.833-2 chr1 60690695 60690965 + 0.833333 NA intron (NR_110628, intron 4 of 5) MIRb|SINE|MIR -68145 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 172.333-51 chr7 76318265 76318871 + 0.833333 NA Intergenic CpG 15895 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 176.833-19 chr2 21673830 21674274 + 0.833333 NA Intergenic Intergenic 36600 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 337.667-4 chr14 64775199 64775920 + 0.833333 NA intron (NM_001024858, intron 21 of 34) intron (NM_001024858, intron 21 of 34) 10127 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 222.167-9 chr13 92896610 92896962 + 0.833333 NA Intergenic Intergenic -148555 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 183.833-17 chr4 27478446 27478792 + 0.833333 NA Intergenic Intergenic 261140 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 327.667 chr1 101567280 101568028 + 0.833333 NA Intergenic Intergenic 243817 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 217.167-30 chr7 70321080 70321493 + 0.833333 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 722811 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 188.667-35 chr4 31779610 31779934 + 0.833333 NA Intergenic Intergenic -217607 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 171.833-6 chr12 9262538 9262782 + 0.833333 NA non-coding (NR_137429, exon 7 of 7) non-coding (NR_137429, exon 7 of 7) -20997 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 286.833-7 chr3 99030663 99031325 + 0.833333 NA Intergenic AluSx1|SINE|Alu -129299 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 185.5-22 chr2 110990439 110990804 + 0.833333 NA intron (NM_001371254, intron 14 of 18) AluJo|SINE|Alu 124967 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 176.5-4 chr11 66881088 66881332 + 0.833333 NA intron (NM_001040716, intron 3 of 22) intron (NM_001040716, intron 3 of 22) 24146 NM_001363524 78999 Hs.209979 NM_024036 ENSG00000173621 LRFN4 FIGLER6|SALM3|SALM3. leucine rich repeat and fibronectin type III domain containing 4 protein-coding 167.667-2 chr1 247525236 247525554 + 0.833333 NA non-coding (NR_027309, exon 4 of 4) non-coding (NR_027309, exon 4 of 4) 5409 NR_027309 148824 Hs.23491 NR_027309 ENSG00000284824 GCSAML-AS1 - GCSAML antisense RNA 1 ncRNA 170.667-6 chr12 24779523 24779727 + 0.833333 NA Intergenic Intergenic 122597 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 166.667-33 chr20 41323804 41324199 + 0.833333 NA Intergenic Tigger3b|DNA|TcMar-Tigger -16820 NM_001301860 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 186.333-13 chr14 43908018 43908304 + 0.833333 NA Intergenic Intergenic 599122 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 242.167-23 chr5 26757512 26757924 + 0.833333 NA Intergenic AluSz|SINE|Alu 280868 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 277-6 chr11 35424158 35424669 + 0.833333 NA Intergenic Intergenic -4355 NM_001195728 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 250.667-26 chr3 20634687 20635251 + 0.833333 NA Intergenic Arthur1|DNA|hAT-Tip100 292501 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 179.333-37 chr4 80593131 80593359 + 0.833333 NA intron (NM_152770, intron 3 of 5) intron (NM_152770, intron 3 of 5) 257525 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 217-23 chr3 8414837 8415333 + 0.833333 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 86573 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 219.833-2 chr10 104352199 104352770 + 0.833333 NA intron (NR_108036, intron 1 of 1) MER91A|DNA|hAT-Tip100 1091 NR_108036 100505869 Hs.338140 NR_108036 CFAP58-DT CCDC147-AS1|CFAP58-AS1|lncITPRIP-1 CFAP58 divergent transcript ncRNA 168.833-7 chr15 81008185 81008518 + 0.833333 NA Intergenic Intergenic 7428 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 177.167-26 chr7 51886091 51886553 + 0.833333 NA Intergenic Intergenic -493066 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 225.667-24 chr20 40708186 40708641 + 0.833333 NA Intergenic MIR|SINE|MIR 6210 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 177.667-30 chr3 115380515 115380752 + 0.833333 NA Intergenic Intergenic -233345 NM_001348801 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 175.333-7 chr11 114439155 114439463 + 0.833333 NA promoter-TSS (NM_015523) promoter-TSS (NM_015523) -158 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 200.667-34 chr3 111638310 111638725 + 0.833333 NA intron (NR_134917, intron 12 of 14) L2a|LINE|L2 -36159 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 197.333-14 chr2 30583783 30584104 + 0.833333 NA intron (NM_182551, intron 6 of 6) L1PA8A|LINE|L1 136697 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 340.833-12 chr7 3616285 3616827 + 0.833333 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 315304 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 206.5-40 chr3 20447515 20447762 + 0.833333 NA Intergenic LTR27B|LTR|ERV1 105170 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 198.5-12 chr13 110412473 110413005 + 0.833333 NA intron (NM_001846, intron 4 of 47) intron (NM_001846, intron 4 of 47) 50548 NM_001267044 100129836 Hs.640035 NM_001267044 COL4A2-AS2 - COL4A2 antisense 2 protein-coding 226.167-15 chr2 64521616 64522038 + 0.833333 NA TTS (NR_136167) TTS (NR_136167) 2328 NR_136167 101927402 Hs.187018 NR_136167 ENSG00000260101 LOC101927402 - uncharacterized LOC101927402 ncRNA 183-27 chr2 74542006 74542285 + 0.833333 NA intron (NM_032603, intron 4 of 13) AluJr|SINE|Alu -6875 NM_001197260 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 192.333-39 chr4 162015686 162015959 + 0.833333 NA intron (NM_001128428, intron 3 of 14) intron (NM_001128428, intron 3 of 14) -6911 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 173-44 chr9 97842362 97842725 + 0.833333 NA intron (NR_147055, intron 1 of 10) L1MD3|LINE|L1 10537 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 179.333-41 chr5 141079668 141080005 + 0.833333 NA Intergenic Intergenic -1805 NR_105056 101926905 Hs.570900 NR_105056 LOC101926905 - uncharacterized LOC101926905 ncRNA 214.167-11 chr2 14322239 14322624 + 0.833333 NA intron (NR_103814, intron 1 of 3) MIRc|SINE|MIR 78527 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 259.5-23 chr4 23288069 23288642 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger 574266 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 210-37 chr5 93994023 93994386 + 0.833333 NA intron (NR_028080, intron 3 of 8) L1MB1|LINE|L1 117459 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 254.833-19 chr7 28899708 28900033 + 0.833333 NA Intergenic Intergenic 58460 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 227-4 chr1 150532934 150533293 + 0.833333 NA Intergenic L2a|LINE|L2 -16256 NM_001288608 54507 Hs.516243 NM_019032 ENSG00000143382 ADAMTSL4 ADAMTSL-4|ECTOL2|TSRC1 ADAMTS like 4 protein-coding 431.833-3 chr9 77474499 77475406 + 0.833333 NA intron (NR_121184, intron 2 of 4) L1MB7|LINE|L1 27303 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 207.667-30 chr4 38634063 38634390 + 0.833333 NA intron (NR_026804, intron 2 of 7) intron (NR_026804, intron 2 of 7) -29973 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 176.667-40 chr3 137110213 137110524 + 0.833333 NA Intergenic AluJr|SINE|Alu 152385 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 201.5-7 chr11 115495536 115496145 + 0.833333 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 8575 NM_014333 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 163.167-9 chr11 76419846 76420130 + 0.833333 NA Intergenic Intergenic -25030 NM_001300942 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 202-25 chr21 28288255 28288588 + 0.833333 NA Intergenic A-rich|Low_complexity|Low_complexity -59754 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 170.333-49 chr6 49440595 49440881 + 0.833333 NA intron (NM_000255, intron 10 of 12) intron (NM_000255, intron 10 of 12) 22515 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 166.167-33 chr6 34115115 34115365 + 0.833333 NA intron (NM_001256809, intron 1 of 8) (TGTGTGCG)n|Simple_repeat|Simple_repeat -4477 NM_001256812 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 175-44 chr4 41889637 41890034 + 0.833333 NA Intergenic MSTA1|LTR|ERVL-MaLR -7224 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 252.333-12 chr4 44933164 44933728 + 0.833333 NA Intergenic MIR|SINE|MIR -206812 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 206.5-25 chr18 6714412 6714893 + 0.833333 NA Intergenic Intergenic -15064 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 255.333-21 chr5 93508589 93509052 + 0.833333 NA intron (NR_109825, intron 5 of 8) L1ME3Cz|LINE|L1 62523 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 327.833-2 chr1 219562661 219563146 + 0.833333 NA Intergenic Intergenic -5579 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 193.667-22 chr15 77546029 77546439 + 0.833333 NA Intergenic Intergenic 20639 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 223.333-51 chrX 109857063 109857500 + 0.833333 NA Intergenic Intergenic -13120 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 205.5-42 chr9 73686627 73686986 + 0.833333 NA Intergenic L1ME3|LINE|L1 534941 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 264-8 chr11 15946939 15947490 + 0.833333 NA Intergenic L1M5|LINE|L1 22407 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 173.667-23 chr17 48026384 48026782 + 0.833333 NA intron (NM_016429, intron 8 of 8) intron (NM_016429, intron 8 of 8) -6299 NR_162100 113218499 NR_162100 MIR10226 - microRNA 10226 ncRNA 169-35 chr2 212132957 212133210 + 0.833333 NA intron (NM_001042599, intron 1 of 26) ERVL-int|LTR|ERVL 293277 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 165.667-30 chr2 79546237 79546475 + 0.833333 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 23173 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 167.333-13 chr11 70518229 70518625 + 0.833333 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) -112667 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 302.833 chr1 16075704 16076214 + 0.833333 NA Intergenic Intergenic -2308 NM_182623 348487 Hs.126825 NM_182623 ENSG00000185519 FAM131C C1orf117 family with sequence similarity 131 member C protein-coding 214.667-39 chr6 35876179 35876500 + 0.833333 NA intron (NM_003137, intron 6 of 15) intron (NM_003137, intron 6 of 15) 44759 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 168.167-29 chr4 94763331 94763719 + 0.833333 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 5570 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 277.333-2 chr1 105392538 105393181 + 0.833333 NA Intergenic L1MA2|LINE|L1 226076 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 248.5-21 chr2 136198243 136198709 + 0.833333 NA Intergenic L1MA2|LINE|L1 -80321 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 181.5-54 chr8 129587676 129587916 + 0.833333 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -12778 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 187.167-5 chr1 173414003 173414383 + 0.833333 NA intron (NR_037845, intron 2 of 2) MLT1B|LTR|ERVL-MaLR 47169 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 172.5-29 chr20 623465 623839 + 0.833333 NA Intergenic MIR|SINE|MIR -13386 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 199.667-36 chr5 55920966 55921220 + 0.833333 NA intron (NM_001242637, intron 15 of 15) intron (NM_001242637, intron 15 of 15) 67771 NM_001242636 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 306.667-24 chr8 133854202 133854836 + 0.833333 NA Intergenic Intergenic -31977 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 265-10 chr2 48117127 48117489 + 0.833333 NA Intergenic MER34A|LTR|ERV1 -197374 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 201.167-4 chr1 234070457 234070800 + 0.833333 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -143583 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 239.667-14 chr13 25478918 25479481 + 0.833333 NA intron (NM_016529, intron 2 of 36) Charlie7|DNA|hAT-Charlie 10425 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 168-5 chr1 209567679 209568040 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR -15855 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 287.333-9 chr3 10983110 10983815 + 0.833333 NA Intergenic MER113|DNA|hAT-Charlie -9272 NM_001348252 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 263.167-17 chr8 27830440 27831030 + 0.833333 NA intron (NM_001278945, intron 2 of 7) MER3|DNA|hAT-Charlie 7082 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 290.5-13 chr2 88923170 88923691 + 0.833333 NA Intergenic L1MC1|LINE|L1 111060 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 163.833-31 chr4 28104707 28104928 + 0.833333 NA Intergenic Intergenic -714765 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 263.667-16 chr3 26851745 26852280 + 0.833333 NA Intergenic Intergenic 157455 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 200.5-38 chr5 172370267 172371102 + 0.833333 NA intron (NM_001017995, intron 6 of 12) intron (NM_001017995, intron 6 of 12) 83839 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 530.5-2 chr4 102429116 102430081 + 0.833333 NA intron (NR_136202, intron 2 of 4) L2|LINE|L2 -71761 NM_001165412 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 238-24 chr4 106412379 106412853 + 0.833333 NA Intergenic MER21C|LTR|ERVL -21008 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 228.334-5 chr16 79470378 79470954 + 0.833333 NA Intergenic MIRb|SINE|MIR 130071 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 199-46 chr7 5528893 5529468 + 0.833333 NA exon (NM_001101, exon 3 of 6) exon (NM_001101, exon 3 of 6) 1421 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 195.333 chr1 206612238 206612634 + 0.833333 NA promoter-TSS (NM_006893) promoter-TSS (NM_006893) 29 NM_006893 1939 Hs.497581 NM_006893 ENSG00000143486 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 219.5-26 chr5 4958005 4958427 + 0.833333 NA Intergenic Intergenic -76143 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 263.667-12 chr2 61853294 61853853 + 0.833333 NA intron (NR_037710, intron 1 of 5) intron (NR_037710, intron 1 of 5) 487 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 273.667-16 chr5 123752028 123752531 + 0.833333 NA Intergenic Intergenic 206862 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 184.5-26 chr2 219253682 219254068 + 0.833333 NA promoter-TSS (NM_006000) promoter-TSS (NM_006000) 43 NM_006000 7277 Hs.75318 NM_006000 ENSG00000127824 TUBA4A ALS22|H2-ALPHA|TUBA1 tubulin alpha 4a protein-coding 206.5-29 chr19 16093660 16093943 + 0.833333 NA intron (NM_001367836, intron 8 of 8) intron (NM_001367836, intron 8 of 8) 16785 NM_001367838 7171 Hs.631618 NM_003290 ENSG00000167460 TPM4 HEL-S-108 tropomyosin 4 protein-coding 164.167-16 chr14 64040192 64040617 + 0.833333 NA intron (NM_015180, intron 45 of 114) L1ME3Cz|LINE|L1 54721 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 168.333-11 chr11 57706561 57706826 + 0.833333 NA intron (NR_157587, intron 1 of 4) AluSz|SINE|Alu 5522 NM_153450 219541 Hs.43619 NM_153450 ENSG00000156603 MED19 DT2P1G7|LCMR1|MED19AS mediator complex subunit 19 protein-coding 180.5-41 chr7 55505746 55506332 + 0.833333 NA intron (NM_001321242, intron 2 of 4) intron (NM_001321242, intron 2 of 4) 20841 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 227.167-4 chr12 5326086 5326433 + 0.833333 NA Intergenic Intergenic -83108 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 178.167-23 chr4 172830480 172830754 + 0.833333 NA intron (NM_001034845, intron 7 of 12) intron (NM_001034845, intron 7 of 12) -103739 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 228.833-2 chr10 67293995 67294320 + 0.833333 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 109253 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 369.167-12 chrX 48945978 48946640 + 0.833333 NA intron (NM_001136159, intron 1 of 8) MIRb|SINE|MIR 11298 NM_017602 55593 Hs.496098 NM_017602 ENSG00000068308 OTUD5 DUBA OTU deubiquitinase 5 protein-coding 170.833-3 chr1 228543928 228544228 + 0.833333 NA Intergenic HSAT4|Satellite|centr -31790 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 323.333 chr1 40711009 40711502 + 0.833333 NA intron (NM_001308115, intron 1 of 9) intron (NM_001308115, intron 1 of 9) 1889 NM_001308115 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 164.833-13 chr4 47532200 47532563 + 0.833333 NA intron (NM_020453, intron 5 of 22) intron (NM_020453, intron 5 of 22) 47106 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 227.833-21 chr8 118841313 118841858 + 0.833333 NA Intergenic THE1D-int|LTR|ERVL-MaLR 110300 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 277.333-32 chr8 100886520 100887033 + 0.833333 NA Intergenic AluSx1|SINE|Alu 63795 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 229.833 chr1 150548460 150548938 + 0.833333 NA promoter-TSS (NM_001288607) promoter-TSS (NM_001288607) -670 NM_001288608 54507 Hs.516243 NM_019032 ENSG00000143382 ADAMTSL4 ADAMTSL-4|ECTOL2|TSRC1 ADAMTS like 4 protein-coding 182.667 chr1 11256478 11256783 + 0.833333 NA intron (NM_004958, intron 4 of 57) MIRb|SINE|MIR 5921 NM_004958 2475 Hs.338207 NM_004958 ENSG00000198793 MTOR FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS mechanistic target of rapamycin kinase protein-coding 210.167-16 chr17 76309318 76309922 + 0.833333 NA 3' UTR (NM_002766, exon 10 of 10) 3' UTR (NM_002766, exon 10 of 10) -1940 NR_130649 84074 Hs.252739 NM_032134 ENSG00000129646 QRICH2 SPGF35 glutamine rich 2 protein-coding 185.333-37 chr4 98045910 98046341 + 0.833333 NA intron (NM_174952, intron 5 of 10) L1M3de|LINE|L1 97351 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 179.5-15 chr13 71496998 71497290 + 0.833333 NA intron (NM_004392, intron 2 of 6) MIRc|SINE|MIR 370048 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 197-43 chr9 98989748 98990131 + 0.833333 NA intron (NM_001855, intron 5 of 41) intron (NM_001855, intron 5 of 41) 46032 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 166.667-10 chr11 112169302 112169644 + 0.833333 NA intron (NM_031275, intron 2 of 4) intron (NM_031275, intron 2 of 4) 2101 NM_031275 56158 Hs.524039 NM_031275 ENSG00000150783 TEX12 - testis expressed 12 protein-coding 236.666-8 chr6 37326421 37326964 + 0.833333 NA intron (NR_130108, intron 12 of 12) AluSc8|SINE|Alu -27291 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 218.167-8 chr12 95467813 95468221 + 0.833333 NA Intergenic MER65D|LTR|ERV1 -6135 NR_133673 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 213.834-9 chr5 55353319 55354095 + 0.833333 NA intron (NM_015360, intron 14 of 26) intron (NM_015360, intron 14 of 26) 45718 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 168.167-2 chr1 169921440 169921692 + 0.833333 NA 3' UTR (NM_001204517, exon 20 of 20) 3' UTR (NM_001204517, exon 20 of 20) -27607 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 253.5-12 chr14 73032836 73033416 + 0.833333 NA Intergenic L1MEd|LINE|L1 -6020 NM_001281734 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 278-34 chr9 135966750 135967328 + 0.833333 NA Intergenic Intergenic -5666 NM_016172 10422 Hs.9194 NM_016172 ENSG00000130560 UBAC1 GBDR1|KPC2|UBADC1 UBA domain containing 1 protein-coding 223-31 chr22 48499523 48500056 + 0.833333 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) 10236 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 165.833-34 chr6 142236492 142236872 + 0.833333 NA Intergenic Intergenic -65237 NM_001032395 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 201.167-28 chr8 86086622 86086900 + 0.833333 NA Intergenic Intergenic -12149 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 207.833-28 chr7 81926507 81926883 + 0.833333 NA Intergenic Intergenic -82482 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 204.833-13 chr2 46107388 46107859 + 0.833333 NA intron (NM_005400, intron 11 of 14) L1MC3|LINE|L1 -189784 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 181.833-8 chr15 88800240 88800558 + 0.833333 NA Intergenic L2b|LINE|L2 -3037 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 172.5-38 chr4 36341507 36341746 + 0.833333 NA intron (NM_001170700, intron 9 of 9) intron (NM_001170700, intron 9 of 9) 60010 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 225-33 chr6 69060849 69061478 + 0.833333 NA intron (NM_001704, intron 15 of 31) intron (NM_001704, intron 15 of 31) 425881 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 326-5 chr18 70509345 70510012 + 0.833333 NA Intergenic Intergenic -125087 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 169.833-29 chr3 9091841 9092219 + 0.833333 NA intron (NM_014850, intron 3 of 21) intron (NM_014850, intron 3 of 21) -100463 NR_121663 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 207.667-36 chr5 55522926 55523332 + 0.833333 NA intron (NR_103485, intron 1 of 6) L1MA3|LINE|L1 11413 NR_001575 379013 Hs.745164 NR_001575 RNF138P1 - ring finger protein 138 pseudogene 1 pseudo 213.833-18 chr5 161464812 161465499 + 0.833333 NA intron (NM_000813, intron 4 of 9) MIRb|SINE|MIR 82969 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 247.833-12 chr2 128321700 128322278 + 0.833333 NA Intergenic CpG -3121 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 166.167-11 chr14 64752347 64752561 + 0.833333 NA intron (NM_001024858, intron 32 of 34) MIRc|SINE|MIR 33232 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 174.833-28 chrX 88326671 88326890 + 0.833333 NA Intergenic L1MEc|LINE|L1 -420445 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 227.833-5 chr11 102780264 102780681 + 0.833333 NA intron (NM_002425, intron 1 of 9) intron (NM_002425, intron 1 of 9) 156 NM_002425 4319 Hs.2258 NM_002425 ENSG00000166670 MMP10 SL-2|STMY2 matrix metallopeptidase 10 protein-coding 257.5-27 chr7 7583439 7584130 + 0.833333 NA intron (NM_001370078, intron 4 of 8) intron (NM_001370078, intron 4 of 8) 15758 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 226.833-21 chr9 100355490 100355854 + 0.833333 NA Intergenic Intergenic -2730 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 175.167-33 chr4 39554440 39554748 + 0.833333 NA intron (NM_174921, intron 4 of 4) AluSz|SINE|Alu 26755 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 178.333-44 chr9 119139709 119140010 + 0.833333 NA Intergenic Intergenic 229576 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 164.167-37 chr4 64931482 64931760 + 0.833333 NA intron (NR_033976, intron 5 of 6) LTR86C|LTR|ERVL 72879 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 176.5-28 chr4 98039309 98039684 + 0.833333 NA intron (NM_174952, intron 5 of 10) (TA)n|Simple_repeat|Simple_repeat 103980 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 250-9 chr18 75923196 75923507 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie -199647 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 329.333-5 chr14 55869326 55869884 + 0.833333 NA Intergenic Intergenic -72931 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 168.333 chr1 18582400 18582613 + 0.833333 NA Intergenic L2b|LINE|L2 -48340 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 192-42 chr7 121084602 121084999 + 0.833333 NA intron (NM_001105533, intron 4 of 17) MER20B|DNA|hAT-Charlie 95409 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 282.333-3 chr12 13437069 13437716 + 0.833333 NA Intergenic Intergenic -60647 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 174.167-35 chr5 143707696 143707961 + 0.833333 NA Intergenic Intergenic 27968 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 180.5-2 chr1 62121933 62122335 + 0.833333 NA intron (NM_001350145, intron 38 of 43) AluSx|SINE|Alu -43278 NR_036059 100422946 NR_036059 ENSG00000283690 MIR3116-2 - microRNA 3116-2 ncRNA 281.333-27 chr8 84806317 84806972 + 0.833333 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 100717 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 237.167-17 chr5 10435882 10436276 + 0.833333 NA 3' UTR (NM_001270661, exon 23 of 23) 3' UTR (NM_001270661, exon 23 of 23) 5772 NR_102746 100505845 Hs.599395 NR_102746 ROPN1L-AS1 - ROPN1L antisense RNA 1 ncRNA 247.167-13 chr3 47350506 47350958 + 0.833333 NA Intergenic L1MB8|LINE|L1 -30289 NM_015466 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 308 chr1 185158425 185159082 + 0.833333 NA intron (NM_017673, intron 1 of 18) MLT1F|LTR|ERVL-MaLR 1586 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 191.333-23 chr2 189154219 189154558 + 0.833333 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) -21277 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 268.167-15 chr3 88763712 88764166 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -343682 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 223.833-20 chr7 46972380 46972728 + 0.833333 NA Intergenic MLT1J|LTR|ERVL-MaLR -275432 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 289.333-4 chr1 233394316 233395075 + 0.833333 NA Intergenic Intergenic 66971 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 175.167-42 chr7 72498928 72499536 + 0.833333 NA Intergenic AluSx1|SINE|Alu -52089 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 189-10 chr10 106055663 106056096 + 0.833333 NA Intergenic Intergenic -84286 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 219.5-32 chr7 46113702 46114035 + 0.833333 NA Intergenic L1MA1|LINE|L1 -192596 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 228-41 chrX 143487581 143488086 + 0.833333 NA Intergenic Intergenic 29642 NM_001009609 139067 Hs.447320 NM_001009609 ENSG00000189252 SPANXN3 CT11.8|SPANX-N3 SPANX family member N3 protein-coding 177.167-30 chr8 61655608 61655966 + 0.833333 NA intron (NM_032468, intron 4 of 14) intron (NM_032468, intron 4 of 14) 34024 NM_032468 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 260.167-22 chr6 135162337 135163093 + 0.833333 NA Intergenic Intergenic -18593 NM_001161658 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 167.833-13 chr14 24333550 24333760 + 0.833333 NA intron (NM_001198568, intron 1 of 24) intron (NM_001198568, intron 1 of 24) 1416 NM_139247 196883 Hs.443428 NM_139247 ENSG00000129467 ADCY4 AC4 adenylate cyclase 4 protein-coding 346.167-11 chr6 153230970 153231454 + 0.833333 NA Intergenic Intergenic -99930 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 212.5-14 chr14 41988062 41988350 + 0.833333 NA Intergenic Intergenic 381350 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 168.667-21 chr2 46631757 46632071 + 0.833333 NA Intergenic Intergenic 14699 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 230.5-16 chr18 12838085 12838507 + 0.833333 NA intron (NM_080423, intron 2 of 8) intron (NM_080423, intron 2 of 8) 2666 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 192.5-12 chr12 132042993 132043386 + 0.833333 NA intron (NM_015409, intron 32 of 52) intron (NM_015409, intron 32 of 52) 11965 NR_002979 677829 Hs.742405 NR_002979 ENSG00000208892 SNORA49 ACA49 small nucleolar RNA, H/ACA box 49 snoRNA 165.833-40 chrX 111007339 111007778 + 0.833333 NA intron (NM_001128167, intron 1 of 14) intron (NM_001128167, intron 1 of 14) 63161 NM_001324330 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 285.333-12 chr7 42550747 42551298 + 0.833333 NA Intergenic Ricksha_0|DNA|MULE-MuDR 155425 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 207.667-15 chr15 88476240 88476844 + 0.833333 NA intron (NM_022839, intron 4 of 5) intron (NM_022839, intron 4 of 5) 8834 NM_001321972 64963 Hs.111286 NM_022839 ENSG00000181991 MRPS11 HCC-2|MRP-S11|S11mt mitochondrial ribosomal protein S11 protein-coding 363.167 chr16 5547447 5548170 + 0.833333 NA Intergenic L1PA16|LINE|L1 68442 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 192-50 chr9 73637542 73638075 + 0.833333 NA Intergenic Intergenic 485943 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 190-39 chr4 4689913 4690292 + 0.833333 NA intron (NR_037888, intron 4 of 5) MLT1F2|LTR|ERVL-MaLR 25776 NR_145783 109623454 NR_145783 SNORD162 - small nucleolar RNA, C/D box 162 snoRNA 229.167-14 chr2 168961026 168961425 + 0.833333 NA intron (NM_003742, intron 18 of 27) intron (NM_003742, intron 18 of 27) 59934 NM_001081686 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 169.833-33 chr4 87520353 87520734 + 0.833333 NA intron (NM_001128310, intron 1 of 11) LTR84a|LTR|ERVL 8960 NM_001128310 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 245.833-17 chr19 29683398 29683972 + 0.833333 NA Intergenic AluJr|SINE|Alu 18224 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 213.333-35 chr6 12045141 12045429 + 0.833333 NA intron (NM_002114, intron 2 of 8) intron (NM_002114, intron 2 of 8) 32973 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 175.833-31 chr3 120149989 120150423 + 0.833333 NA Intergenic Intergenic -55759 NM_002093 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 201.333-7 chr10 68787197 68787563 + 0.833333 NA intron (NR_104262, intron 20 of 23) L1MC4a|LINE|L1 32208 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 196.667-4 chr10 63641746 63642011 + 0.833333 NA Intergenic Intergenic -119988 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 224.167-24 chr4 96062820 96063293 + 0.833333 NA Intergenic Intergenic 222963 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 336.5-9 chr22 26649410 26649894 + 0.833333 NA Intergenic AluSc|SINE|Alu -7830 NR_033319 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript ncRNA 211-50 chr9 103624818 103625169 + 0.833333 NA Intergenic Intergenic -299960 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 274.333-15 chr2 106833400 106833940 + 0.833333 NA intron (NM_001322362, intron 3 of 5) intron (NM_001322362, intron 3 of 5) 52358 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 235.833-20 chr6 143734857 143735345 + 0.833333 NA intron (NM_001100165, intron 2 of 11) intron (NM_001100165, intron 2 of 11) 57136 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 259.834-4 chr2 174974736 174975394 + 0.833333 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 30188 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 310.667 chr10 90316992 90317642 + 0.833333 NA Intergenic Intergenic 223488 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 236.333-11 chr18 2763758 2764309 + 0.833333 NA intron (NM_015295, intron 37 of 47) intron (NM_015295, intron 37 of 47) -82973 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 207-33 chr8 116308665 116309223 + 0.833333 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 16115 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 191-52 chrX 155574260 155574560 + 0.833333 NA intron (NM_018196, intron 1 of 7) L1M4a2|LINE|L1 -38155 NM_001304990 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 280.333-4 chr11 12284447 12284934 + 0.833333 NA Intergenic L4_B_Mam|LINE|RTE-X -2210 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 201.5-20 chr2 11183539 11183979 + 0.833333 NA intron (NM_001321643, intron 32 of 32) intron (NM_001321643, intron 32 of 32) 28292 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 166-27 chr14 69977510 69977801 + 0.833333 NA promoter-TSS (NR_145786) promoter-TSS (NR_145786) -478 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 171-12 chr11 121466438 121466702 + 0.833333 NA intron (NM_003105, intron 1 of 47) intron (NM_003105, intron 1 of 47) 14256 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 225.833 chr1 78303734 78304209 + 0.833333 NA intron (NR_027310, intron 3 of 5) intron (NR_027310, intron 3 of 5) 74372 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 163.667-2 chr1 57115350 57115620 + 0.833333 NA intron (NM_001365793, intron 4 of 14) MER3|DNA|hAT-Charlie -149345 NM_001278544 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 279.833-5 chr16 68833358 68833830 + 0.833333 NA 3' UTR (NM_004360, exon 16 of 16) 3' UTR (NM_004360, exon 16 of 16) -9937 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 201-26 chr22 38558151 38558471 + 0.833333 NA intron (NM_001363017, intron 5 of 11) MamRep1151|LTR?|LTR? 10098 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 196.667-24 chr19 7366797 7367216 + 0.833333 NA intron (NM_001367823, intron 2 of 28) AluJr|SINE|Alu 18069 NM_001367823 23370 Hs.465761 NM_015318 ENSG00000104880 ARHGEF18 P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF Rho/Rac guanine nucleotide exchange factor 18 protein-coding 174.833-11 chr2 46504679 46505033 + 0.833333 NA Intergenic Intergenic 25291 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000284701 TMEM247 - transmembrane protein 247 protein-coding 221.333-26 chr6 40144917 40145605 + 0.833333 NA Intergenic Intergenic 210745 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 170.667-46 chr7 24826119 24826414 + 0.833333 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) 66355 NM_145320 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 165.333-34 chr5 7749755 7750092 + 0.833333 NA intron (NM_020546, intron 15 of 24) L1MEd|LINE|L1 101210 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 171-57 chr8 50125145 50125613 + 0.833333 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -38752 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 214.833-17 chr6 10435290 10435726 + 0.833333 NA promoter-TSS (NR_027793) promoter-TSS (NR_027793) -686 NR_027793 221718 Hs.44714 NM_152738 LINC00518 C6orf218 long intergenic non-protein coding RNA 518 ncRNA 286.667-12 chr18 107167 107717 + 0.833333 NA Intergenic BSR/Beta|Satellite|Satellite -1623 NR_033770 727758 Hs.585843 NR_033770 ENSG00000263006 ROCK1P1 ROCK1P Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudo 182.667-15 chr14 65674268 65674658 + 0.833333 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 203361 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 182.333-2 chr1 218585642 218585973 + 0.833333 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 75712 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 186.333-25 chr2 227882629 227883010 + 0.833333 NA intron (NM_001330004, intron 2 of 13) THE1D|LTR|ERVL-MaLR 11188 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 217.833-10 chr16 23734787 23735325 + 0.833333 NA Intergenic Intergenic -19970 NM_022097 63928 Hs.178589 NM_022097 ENSG00000166869 CHP2 - calcineurin like EF-hand protein 2 protein-coding 200.333-6 chr1 115345327 115345571 + 0.833333 NA intron (NR_157569, intron 1 of 1) LTR81A|LTR|Gypsy -7213 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 232-31 chr3 184229444 184229822 + 0.833333 NA promoter-TSS (NM_138345) promoter-TSS (NM_138345) -720 NM_138345 90113 Hs.584997 NM_138345 ENSG00000145198 VWA5B2 - von Willebrand factor A domain containing 5B2 protein-coding 208.333-33 chr5_GL949742v1_alt 37874 38303 + 0.833333 NA intron (NR_109948, intron 3 of 4) HAL1|LINE|L1 9356 NR_109948 101929645 Hs.531878 NR_109948 LOC101929645 - uncharacterized LOC101929645 ncRNA 175-26 chr2 66158227 66158538 + 0.833333 NA Intergenic AluSx3|SINE|Alu 199946 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 175.333-19 chr15 87708190 87708457 + 0.833333 NA Intergenic Intergenic 131394 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 185.167-2 chr1 157056689 157056980 + 0.833333 NA Intergenic L1MB4|LINE|L1 -11092 NM_014784 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 186.333-22 chr18 12283010 12283484 + 0.833333 NA Intergenic MLT2D|LTR|ERVL -24422 NM_001303524 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 261.833-10 chr2 60664441 60664933 + 0.833333 NA Intergenic Intergenic -91581 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 232.833-9 chr12 30851917 30852265 + 0.833333 NA Intergenic LTR9B|LTR|ERV1 56410 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 228.833-10 chr17_GL000205v2_random 11340 11886 + 0.833333 NA Intergenic CER|Satellite|Satellite 46353 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 189.667-20 chr15 61098968 61099371 + 0.833333 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 130133 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 167.667-41 chr6 149601161 149601446 + 0.833333 NA intron (NM_001204076, intron 5 of 7) intron (NM_001204076, intron 5 of 7) 7687 NR_077247 645958 Hs.632614 NR_077247 RPS18P9 RPS18_6_767 ribosomal protein S18 pseudogene 9 pseudo 165.5-32 chr4 42517673 42518070 + 0.833333 NA intron (NM_001105529, intron 21 of 35) intron (NM_001105529, intron 21 of 35) 120383 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 214-23 chr17 58455312 58455662 + 0.833333 NA intron (NM_001080439, intron 5 of 5) L1MA3|LINE|L1 32921 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 163.667-6 chr10 8969871 8970104 + 0.833333 NA Intergenic MLT1I|LTR|ERVL-MaLR 71998 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 233.5-32 chr9 26656172 26656482 + 0.833333 NA Intergenic MamRep564|Unknown|Unknown 236475 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 275-7 chr12 120464427 120464887 + 0.833333 NA TTS (NR_033684) TTS (NR_033684) 5091 NM_003769 8683 Hs.706889 NM_003769 ENSG00000111786 SRSF9 SFRS9|SRp30c serine and arginine rich splicing factor 9 protein-coding 166.5-22 chr2 81329224 81329611 + 0.833333 NA Intergenic Intergenic 137529 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 180.667-12 chr11 83210937 83211292 + 0.833333 NA intron (NM_001300975, intron 4 of 10) intron (NM_001300975, intron 4 of 10) 17402 NM_182603 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 328.333-3 chr1 185178215 185178650 + 0.833333 NA intron (NM_017673, intron 5 of 18) L2a|LINE|L2 21265 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 212.333-2 chr1 48577782 48578152 + 0.833333 NA intron (NM_001323575, intron 11 of 12) MIRb|SINE|MIR -105759 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 172.167-10 chr19 46168480 46168827 + 0.833333 NA Intergenic LTR56|LTR|ERV1 20415 NM_001135113 147920 Hs.99376 NM_001002915 ENSG00000204866 IGFL2 UNQ645|VPRI645 IGF like family member 2 protein-coding 230.167-8 chr16 62864298 62864836 + 0.833333 NA Intergenic MIR|SINE|MIR -828129 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 192.167-34 chr7 82452173 82452441 + 0.833333 NA Intergenic Intergenic -8351 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 304.667-17 chr6 52481486 52482043 + 0.833333 NA intron (NR_033327, intron 8 of 9) AluJo|SINE|Alu 60756 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 210-42 chr7 37443093 37443488 + 0.833333 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) 5662 NM_014800 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 185.167-24 chr6 127210841 127211131 + 0.833333 NA Intergenic L3|LINE|CR1 -55696 NM_001242851 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 173.833-3 chr1 76586629 76586982 + 0.833333 NA intron (NR_146056, intron 4 of 5) intron (NR_146056, intron 4 of 5) 192462 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 273.333-22 chr8 120800936 120801301 + 0.833333 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 10928 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 203-35 chr9 18623701 18624125 + 0.833333 NA intron (NM_052866, intron 5 of 12) intron (NM_052866, intron 5 of 12) 50607 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 189.167-2 chr1 58842054 58842369 + 0.833333 NA intron (NR_108106, intron 1 of 1) MLT1C|LTR|ERVL-MaLR 57060 NR_108106 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 427.833-4 chr2 100437284 100438078 + 0.833333 NA Intergenic L1M5|LINE|L1 -20013 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 164.333-14 chr13 50529286 50529582 + 0.833333 NA TTS (NR_109974) TTS (NR_109974) -1985 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 248.167 chr1 39656989 39657459 + 0.833333 NA Intergenic Intergenic 14814 NM_032526 84618 Hs.307006 NM_032526 ENSG00000116981 NT5C1A CN-I|CN-IA|CN1|CN1A|CNI 5'-nucleotidase, cytosolic IA protein-coding 182.5-5 chr11 32119974 32120468 + 0.833333 NA Intergenic Intergenic 23691 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 203-29 chr5 63130678 63131074 + 0.833333 NA Intergenic Intergenic 552057 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 207.167-4 chr11 107139860 107140190 + 0.833333 NA Intergenic Intergenic -121549 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 190.667-26 chr2 122187137 122187385 + 0.833333 NA Intergenic Intergenic 431610 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 173.167-30 chr4 71289140 71289450 + 0.833333 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -49758 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 183.167-39 chr8 113901983 113902308 + 0.833333 NA Intergenic MIR|SINE|MIR -465206 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 166.167-9 chr11 124550874 124551140 + 0.833333 NA Intergenic Intergenic -7353 NM_001005195 219858 Hs.553634 NM_001005195 ENSG00000170953 OR8B12 OR11-317 olfactory receptor family 8 subfamily B member 12 protein-coding 226.333-28 chr9 87244440 87244902 + 0.833333 NA Intergenic Intergenic 96027 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 174.667-34 chr3 99175906 99176144 + 0.833333 NA Intergenic Intergenic -274330 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 258.667-12 chr2 20355773 20356139 + 0.833333 NA Intergenic HAL1b|LINE|L1 -3703 NM_001352925 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 185-8 chr10 31031982 31032436 + 0.833333 NA promoter-TSS (NM_001143767) promoter-TSS (NM_001143767) -272 NM_001143771 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 215.167-19 chr21 34940909 34941258 + 0.833333 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -52384 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 206.5-48 chr6 57013870 57014384 + 0.833333 NA intron (NM_152731, intron 3 of 6) MIR|SINE|MIR -32405 NM_001286274 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 165.167-10 chr14 64544091 64544386 + 0.833333 NA Intergenic Intergenic 3770 NM_021979 3306 Hs.432648 NM_021979 ENSG00000126803 HSPA2 HSP70-2|HSP70-3 heat shock protein family A (Hsp70) member 2 protein-coding 238.667-16 chr4 101236941 101237457 + 0.833333 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 3673 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 245.5-19 chr4 121892484 121892832 + 0.833333 NA intron (NM_001366479, intron 9 of 10) intron (NM_001366479, intron 9 of 10) -22161 NM_018190 55212 Hs.591694 NM_018190 ENSG00000138686 BBS7 BBS2L1 Bardet-Biedl syndrome 7 protein-coding 181.167-33 chr8 87220348 87220662 + 0.833333 NA intron (NM_173538, intron 5 of 10) (T)n|Simple_repeat|Simple_repeat 354090 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 257.667-3 chr12 42219812 42220166 + 0.833333 NA intron (NR_135140, intron 2 of 6) MER103C|DNA|hAT-Charlie 18379 NR_135139 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 216.5-19 chr16 65127047 65127629 + 0.833333 NA Intergenic Intergenic -5275 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 221.667-4 chr10 8702701 8702984 + 0.833333 NA Intergenic Intergenic -108451 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 238.5-14 chr18 68726449 68726845 + 0.833333 NA intron (NM_001093729, intron 2 of 9) intron (NM_001093729, intron 2 of 9) 11431 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 181.167-28 chr7 5424225 5424590 + 0.833333 NA promoter-TSS (NM_001080495) promoter-TSS (NM_001080495) -861 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 186.167-5 chr11 69956170 69956577 + 0.833333 NA Intergenic Intergenic 107551 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 219-27 chr4 176883552 176883964 + 0.833333 NA Intergenic Intergenic 8056 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 180-29 chr18 622499 622719 + 0.833333 NA intron (NM_199167, intron 3 of 8) intron (NM_199167, intron 3 of 8) 5909 NM_199167 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 189.667-23 chr17 49414931 49415177 + 0.833333 NA promoter-TSS (NM_001281715) promoter-TSS (NM_001281715) -149 NM_001281497 5245 Hs.514303 NM_002634 ENSG00000167085 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 171-2 chr1 40993055 40993428 + 0.833333 NA intron (NR_125440, intron 7 of 17) AluSx1|SINE|Alu 4722 NM_001301237 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 259.167-6 chr22 34733831 34734381 + 0.833333 NA Intergenic MLT1F2|LTR|ERVL-MaLR 263810 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 490.333-3 chr14 49907486 49908417 + 0.833333 NA Intergenic Intergenic 14869 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 177.667-45 chrX 96459457 96459887 + 0.833333 NA Intergenic MIR|SINE|MIR -121770 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 204.167-25 chr8 139235804 139236244 + 0.833333 NA Intergenic MLT1B|LTR|ERVL-MaLR -321983 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 205.833-7 chr12 40088356 40088794 + 0.833333 NA intron (NM_052885, intron 1 of 9) MamRep1879|DNA|hAT-Tip100? 17506 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 177.5-34 chr22 19478506 19478771 + 0.833333 NA promoter-TSS (NM_001369291) promoter-TSS (NM_001369291) 555 NM_005659 7353 Hs.474213 NM_005659 ENSG00000070010 UFD1 UFD1L ubiquitin recognition factor in ER associated degradation 1 protein-coding 185.5-37 chr7 16668708 16668941 + 0.833333 NA intron (NM_001362717, intron 2 of 11) intron (NM_001362717, intron 2 of 11) 7610 NM_001362717 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 211.5-31 chr20 50418778 50419170 + 0.833333 NA Intergenic AluSx3|SINE|Alu -91347 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 269.667-22 chr5 119050437 119050957 + 0.833333 NA intron (NR_134250, intron 1 of 2) intron (NR_134250, intron 1 of 2) -13036 NR_134249 105379143 Hs.636285 NR_134249 ENSG00000249494 LOC105379143 - uncharacterized LOC105379143 ncRNA 173.167-24 chr22 31242076 31242430 + 0.833333 NA intron (NM_005569, intron 2 of 15) L3|LINE|CR1 -6131 NM_001031801 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 165.667-42 chr5 52105834 52106118 + 0.833333 NA Intergenic Intergenic 97945 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 189.667-9 chr10 83228811 83229355 + 0.833333 NA Intergenic Intergenic 448006 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 185.333-53 chr8 88870785 88871041 + 0.833333 NA Intergenic L1MD2|LINE|L1 -543430 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 232.333-14 chr19 48245617 48246169 + 0.833333 NA intron (NM_001351789, intron 2 of 11) intron (NM_001351789, intron 2 of 11) 3740 NR_033678 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 196.5-35 chr5 76590742 76591093 + 0.833333 NA intron (NM_006633, intron 8 of 35) AluJb|SINE|Alu 18052 NR_134278 101929109 Hs.665172 NR_134278 ENSG00000249713 LOC101929109 - uncharacterized LOC101929109 ncRNA 211.167-9 chr15 58190891 58191225 + 0.833333 NA Intergenic Intergenic 52677 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 235.167-24 chr4 186007299 186007690 + 0.833333 NA Intergenic Intergenic -51122 NM_021069 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 172.5-46 chr5 174829535 174829859 + 0.833333 NA Intergenic MER77B|LTR|ERVL 77963 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 193.333-34 chr2 125129149 125129503 + 0.833333 NA Intergenic L1PA15|LINE|L1 988659 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 288.667-18 chr7 104862555 104863336 + 0.833333 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -58853 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 227.167-19 chr3 133383095 133383489 + 0.833333 NA intron (NM_023943, intron 4 of 5) intron (NM_023943, intron 4 of 5) -16764 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 197-9 chr13 110707897 110708199 + 0.833333 NA Intergenic Intergenic -1533 NM_001352252 79587 Hs.508725 NM_024537 ENSG00000134905 CARS2 COXPD27|cysRS cysteinyl-tRNA synthetase 2, mitochondrial protein-coding 202.167-4 chr10 67528197 67528606 + 0.833333 NA intron (NM_001127384, intron 4 of 17) L2a|LINE|L2 -124991 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 261.833-19 chr9 106111470 106111817 + 0.833333 NA Intergenic Intergenic 417102 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 202.833-5 chr12 387375 387781 + 0.833333 NA intron (NM_001042603, intron 1 of 27) intron (NM_001042603, intron 1 of 27) 1742 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 234.167-10 chr14 57378881 57379235 + 0.833333 NA Intergenic Intergenic -11528 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 233.833-4 chr11 74018134 74018596 + 0.833333 NA intron (NM_001286577, intron 32 of 32) intron (NM_001286577, intron 32 of 32) -9128 NM_022803 7352 Hs.101337 NM_003356 ENSG00000175564 UCP3 SLC25A9 uncoupling protein 3 protein-coding 244.833-4 chr2 27970092 27970486 + 0.833333 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -26078 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 228.833-3 chr10 119893070 119893362 + 0.833333 NA intron (NR_037771, intron 1 of 17) L2c|LINE|L2 486 NR_037771 11196 Hs.435004 NM_007190 ENSG00000107651 SEC23IP MSTP053|P125|P125A SEC23 interacting protein protein-coding 217.333-8 chr11 8544046 8544332 + 0.833333 NA intron (NM_030906, intron 1 of 13) L1PA7|LINE|L1 49787 NM_001352397 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 169.667-47 chr5 36804000 36804213 + 0.833333 NA Intergenic Intergenic 72588 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 238.5-17 chr2 117979539 117979910 + 0.833333 NA intron (NM_019044, intron 7 of 23) intron (NM_019044, intron 7 of 23) 34346 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 224.5-24 chr2 100612553 100613060 + 0.833333 NA Intergenic MIR3|SINE|MIR 9067 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 183.167-46 chrX 5550740 5551143 + 0.833333 NA Intergenic Intergenic -675417 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 243.5-7 chr15 55614901 55615441 + 0.833333 NA 3' UTR (NM_173814, exon 20 of 20) 3' UTR (NM_173814, exon 20 of 20) -26200 NM_015617 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 171-15 chr12 82139283 82139670 + 0.833333 NA Intergenic L1ME3A|LINE|L1 185757 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 346-5 chr21 21921822 21922533 + 0.833333 NA Intergenic L1MEc|LINE|L1 175192 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 199.167-23 chr4 30426786 30427126 + 0.833333 NA Intergenic AluSq2|SINE|Alu -293413 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 351.833-11 chr4 71633575 71634469 + 0.833333 NA Intergenic Intergenic 150057 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 192.167-39 chr8 115207828 115208437 + 0.833333 NA Intergenic LTR49-int|LTR|ERV1 459881 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 307.333-19 chr9 37587661 37588600 + 0.833333 NA TTS (NM_001134484) TTS (NM_001134484) 4467 NM_001001790 401505 Hs.130774 NM_001001790 ENSG00000175768 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 protein-coding 240.5-20 chr4 49097121 49097884 + 0.833333 NA Intergenic (CATTC)n|Satellite|Satellite 110860 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 227.667-22 chr2 6877026 6877501 + 0.833333 NA promoter-TSS (NM_080657) promoter-TSS (NM_080657) -514 NM_080657 91543 Hs.17518 NM_080657 ENSG00000134321 RSAD2 2510004L01Rik|cig33|cig5|vig1 radical S-adenosyl methionine domain containing 2 protein-coding 209.333-4 chr1 66732839 66733392 + 0.833333 NA intron (NM_001350218, intron 18 of 22) intron (NM_001350218, intron 18 of 22) -19344 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 192.5-56 chr9 115115117 115115423 + 0.833333 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 2887 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 335.667-17 chr8 118065189 118065983 + 0.833333 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 46233 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 206.833-6 chr16 60683843 60684235 + 0.833333 NA Intergenic Intergenic -324246 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 196-2 chr1 74703434 74703883 + 0.833333 NA Intergenic Intergenic 29392 NM_001889 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 237.333-21 chr2 169014100 169014432 + 0.833333 NA intron (NM_003742, intron 4 of 27) intron (NM_003742, intron 4 of 27) 17058 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 205-30 chr8 144088547 144089047 + 0.833333 NA Intergenic LTR10E|LTR|ERV1 6163 NM_003801 8733 Hs.627962 NM_003801 ENSG00000197858 GPAA1 GAA1|GPIBD15|hGAA1 glycosylphosphatidylinositol anchor attachment 1 protein-coding 364.666-2 chr10 8218722 8219371 + 0.833333 NA Intergenic Intergenic 49259 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 188.833 chr1 60847118 60847364 + 0.833333 NA Intergenic Zaphod|DNA|hAT-Tip100 -21657 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 350.667-3 chr13 67147416 67148006 + 0.833333 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 82625 NM_001318374 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 213-3 chr1 187531367 187531700 + 0.833333 NA Intergenic L2a|LINE|L2 87905 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 167.833-10 chr12 47867843 47868429 + 0.833333 NA intron (NM_001017535, intron 4 of 10) intron (NM_001017535, intron 4 of 10) 36858 NM_000376 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 178-2 chr1 92048398 92048685 + 0.833333 NA intron (NM_173567, intron 4 of 6) intron (NM_173567, intron 4 of 6) 18556 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 206.667-37 chr3 146503346 146503931 + 0.833333 NA Intergenic LTR101_Mam|LTR|ERVL -7647 NM_001199979 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 175.333-18 chr15 71761070 71761600 + 0.833333 NA intron (NM_001286429, intron 9 of 11) L1MEi|LINE|L1 -49219 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 219.833-12 chr19 10627785 10628114 + 0.833333 NA exon (NM_020428, exon 4 of 22) exon (NM_020428, exon 4 of 22) 2396 NM_020428 57153 Hs.534560 NM_020428 ENSG00000129353 SLC44A2 CTL2|PP1292 solute carrier family 44 member 2 protein-coding 206.667-48 chr7 52451569 52451862 + 0.833333 NA Intergenic Intergenic -583918 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 194.333-38 chr9 128733087 128733368 + 0.833333 NA TTS (NR_046240) TTS (NR_046240) 8765 NR_046240 100506100 Hs.62946 NR_046240 ENSG00000223478 LOC100506100 - uncharacterized LOC100506100 ncRNA 178-23 chr22 26062322 26062666 + 0.833333 NA Intergenic MLT1K|LTR|ERVL-MaLR -106968 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 239.333-14 chr2 147841240 147841693 + 0.833333 NA Intergenic Intergenic -3051 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 184.667-40 chr4_GL000008v2_random 37 368 + 0.833333 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat 177969 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 192.833-32 chr6 151322487 151322819 + 0.833333 NA intron (NM_005100, intron 3 of 4) intron (NM_005100, intron 3 of 4) -2878 NM_144497 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 206.833-11 chr21 45364130 45364594 + 0.833333 NA Intergenic Intergenic -22372 NR_103811 388830 Hs.592162 NR_103811 ENSG00000237664 LINC00316 C21orf111|NCRNA00316|PRED59 long intergenic non-protein coding RNA 316 ncRNA 294.667-6 chr10 82377573 82378333 + 0.833333 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -145033 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 178-35 chr5 9635627 9635869 + 0.833333 NA Intergenic L1PB2|LINE|L1 -5397 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 187.167-10 chr12 4030753 4031105 + 0.833333 NA Intergenic Intergenic -157481 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 285-22 chr9 32627956 32628635 + 0.833333 NA Intergenic L1ME3E|LINE|L1 7374 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 252.833-14 chr5 95565931 95566401 + 0.833333 NA intron (NM_198150, intron 2 of 7) intron (NM_198150, intron 2 of 7) 11065 NM_198150 153642 Hs.585051 NM_198150 ENSG00000164291 ARSK TSULF arylsulfatase family member K protein-coding 206.167-18 chr4 167959793 167960221 + 0.833333 NA Intergenic L1M3f|LINE|L1 -132530 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 209.667-12 chr14 43197671 43198127 + 0.833333 NA Intergenic Cheshire|DNA|hAT-Charlie 1309384 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 188.667-46 chr7 110138841 110139223 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -178819 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 199.667-25 chr21 30046234 30046513 + 0.833333 NA Intergenic Intergenic -106321 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 256.333-18 chr5 55024270 55024630 + 0.833333 NA promoter-TSS (NR_104662) promoter-TSS (NR_104662) 194 NM_002104 3003 Hs.277937 NM_002104 ENSG00000113088 GZMK TRYP2 granzyme K protein-coding 258.167-4 chr11 65973152 65973672 + 0.833333 NA intron (NM_005146, intron 12 of 19) L1M5|LINE|L1 11678 NM_005146 9092 Hs.502883 NM_005146 ENSG00000175467 SART1 Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP protein-coding 234.667-27 chr5 8456873 8457351 + 0.833333 NA promoter-TSS (NR_039989) promoter-TSS (NR_039989) 452 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 179.5-39 chr5 51547331 51547647 + 0.833333 NA Intergenic L2a|LINE|L2 164041 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 187-14 chr19 15785705 15786002 + 0.833333 NA Intergenic L1PA4|LINE|L1 -5865 NR_033864 388514 Hs.438274 NR_033864 CYP4F24P - cytochrome P450 family 4 subfamily F member 24, pseudogene pseudo 184.167-4 chr10 114623682 114624035 + 0.833333 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) 8539 NM_001352441 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 236.333-7 chr14 61542666 61543213 + 0.833333 NA intron (NM_006255, intron 12 of 13) MIRb|SINE|MIR 27255 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 200.334-11 chr8 85137101 85137671 + 0.833333 NA intron (NM_033402, intron 14 of 18) (TTA)n|Simple_repeat|Simple_repeat 30148 NM_033402 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 220.167-19 chr19 13723256 13723668 + 0.833333 NA Intergenic L1MB3|LINE|L1 -8290 NM_001320565 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 358.5-15 chr9 132166174 132166886 + 0.833333 NA 5' UTR (NM_032536, exon 2 of 8) 5' UTR (NM_032536, exon 2 of 8) 4472 NM_032536 84628 Hs.163642 NM_032536 ENSG00000196358 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 185.333-2 chr1 167539569 167539850 + 0.833333 NA Intergenic Intergenic 14053 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 194-41 chr9 94970984 94971388 + 0.833333 NA intron (NM_032823, intron 8 of 14) intron (NM_032823, intron 8 of 14) -25632 NR_147613 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 303.833-14 chr7 134856815 134857372 + 0.833333 NA intron (NM_033157, intron 2 of 14) L2c|LINE|L2 -34307 NM_033139 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 270.167-5 chr12 49121241 49121735 + 0.833333 NA Intergenic Intergenic 9907 NM_006082 10376 Hs.524390 NM_006082 ENSG00000123416 TUBA1B K-ALPHA-1 tubulin alpha 1b protein-coding 187.667-2 chr1 146035307 146035780 + 0.833333 NA Intergenic AluJb|SINE|Alu -13721 NM_213653 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 179.833-4 chr1 199130021 199130548 + 0.833333 NA Intergenic Intergenic -18314 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 190.5-33 chr4 41956698 41957154 + 0.833333 NA 3' UTR (NM_018126, exon 7 of 7) 3' UTR (NM_018126, exon 7 of 7) 21497 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 211.5-49 chr9 86801626 86802203 + 0.833333 NA Intergenic Intergenic 145592 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 247.333-27 chr9 129777051 129777382 + 0.833333 NA Intergenic Intergenic -24174 NM_004878 9536 Hs.146688 NM_004878 ENSG00000148344 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 222.5-28 chr4 107032224 107032562 + 0.833333 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 3920 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 281.167-17 chr4 127549953 127550317 + 0.833333 NA Intergenic MIRb|SINE|MIR -82822 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 189.833-6 chr13 101142785 101143093 + 0.833333 NA intron (NM_001350749, intron 17 of 43) intron (NM_001350749, intron 17 of 43) -198575 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 187.167-8 chr11 59898540 59898915 + 0.833333 NA Intergenic Intergenic -32240 NM_001062 6947 Hs.2012 NM_001062 ENSG00000134827 TCN1 HC|TC-1|TC1|TCI transcobalamin 1 protein-coding 329-6 chr2 44268361 44268886 + 0.833333 NA Intergenic Intergenic -6857 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 191.333-43 chr8 66429999 66430268 + 0.833333 NA exon (NM_015169, exon 1 of 1) exon (NM_015169, exon 1 of 1) 1119 NM_015169 23212 Hs.71827 NM_015169 ENSG00000179041 RRS1 - ribosome biogenesis regulator 1 homolog protein-coding 212.667-11 chr14 74324450 74324988 + 0.833333 NA Intergenic AluJb|SINE|Alu -21785 NR_003256 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 248-42 chr9 100741888 100742211 + 0.833333 NA Intergenic L1MA3|LINE|L1 163970 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 265.5-4 chr11 65770748 65771215 + 0.833333 NA Intergenic AluJb|SINE|Alu 9995 NM_138368 91056 Hs.591957 NM_138368 ENSG00000254470 AP5B1 AP-5|PP1030 adaptor related protein complex 5 subunit beta 1 protein-coding 376.166-3 chr4 77599179 77599838 + 0.833333 NA intron (NM_006419, intron 1 of 4) MER2|DNA|TcMar-Tigger 87755 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 250-23 chr3 50934256 50934679 + 0.833333 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) 259387 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 281.167-6 chr14 50934059 50934506 + 0.833333 NA intron (NM_002863, intron 3 of 19) intron (NM_002863, intron 3 of 19) 10201 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 205.333-43 chr7 98705576 98706055 + 0.833333 NA Intergenic Intergenic 88530 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 170.833-7 chr10 73455902 73456184 + 0.833333 NA intron (NM_001142353, intron 9 of 13) intron (NM_001142353, intron 9 of 13) -22482 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 186-12 chr16 20360153 20360489 + 0.833333 NA intron (NM_174924, intron 11 of 11) intron (NM_174924, intron 11 of 11) -7443 NM_003361 7369 Hs.654425 NM_003361 ENSG00000169344 UMOD ADMCKD2|FJHN|HNFJ|HNFJ1|MCKD2|THGP|THP uromodulin protein-coding 208.5-32 chr3 114336298 114336753 + 0.833333 NA non-coding (NR_121662, exon 7 of 7) non-coding (NR_121662, exon 7 of 7) -15286 NR_038993 100131117 Hs.122417 NR_038993 ENSG00000241560 ZBTB20-AS1 - ZBTB20 antisense RNA 1 ncRNA 170.833-4 chr1 231120767 231121045 + 0.833333 NA Intergenic L1MCb|LINE|L1 -42022 NM_001004342 440730 Hs.655089 NM_001004342 ENSG00000119283 TRIM67 TNL tripartite motif containing 67 protein-coding 188.5-44 chr7 2369302 2369742 + 0.833333 NA exon (NM_001362792, exon 11 of 20) exon (NM_001362792, exon 11 of 20) 14695 NM_001037283 8662 Hs.371001 NM_003751 ENSG00000106263 EIF3B EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 eukaryotic translation initiation factor 3 subunit B protein-coding 203.167-27 chr5 133444065 133444379 + 0.833333 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -16516 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 196.833-20 chr4 173601499 173601902 + 0.833333 NA Intergenic Intergenic 71242 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 271.167-14 chr20 20615736 20616221 + 0.833333 NA intron (NM_020343, intron 13 of 39) intron (NM_020343, intron 13 of 39) 96666 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 188.833-21 chr2 88121072 88121445 + 0.833333 NA Intergenic Intergenic 6804 NM_001443 2168 Hs.380135 NM_001443 ENSG00000163586 FABP1 FABPL|L-FABP fatty acid binding protein 1 protein-coding 166.667 chr1 114280786 114281009 + 0.833333 NA Intergenic L1MC1|LINE|L1 -127028 NM_001366224 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 189-30 chr3 15241493 15242128 + 0.833333 NA intron (NM_014296, intron 15 of 20) intron (NM_014296, intron 15 of 20) -12374 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 187.833-21 chr5 117666534 117666996 + 0.833333 NA Intergenic Intergenic -63596 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 211.667-35 chr6 7615421 7615687 + 0.833333 NA Intergenic Intergenic 25356 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 179.5-3 chr10 74015243 74015647 + 0.833333 NA intron (NM_014000, intron 1 of 21) AluSz|SINE|Alu 17329 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 165.833-12 chr13 65645360 65645646 + 0.833333 NA Intergenic Intergenic -220544 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 242.833-2 chr10 31467274 31467928 + 0.833333 NA intron (NM_001323678, intron 2 of 6) L1PB4|LINE|L1 -67846 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 265.833-11 chr2 163566323 163566928 + 0.833333 NA Intergenic Intergenic 169383 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 273.833-4 chr17 53270416 53270906 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie 285156 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 226.5-14 chr14 28451420 28452007 + 0.833333 NA Intergenic L1MA9|LINE|L1 313606 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 257.667-16 chr3 99529663 99530042 + 0.833333 NA Intergenic Intergenic -108742 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 225.167-31 chr8 136971254 136971588 + 0.833333 NA Intergenic Intergenic 440623 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 174.5-9 chr12 31653088 31653377 + 0.833333 NA intron (NM_001135864, intron 1 of 3) intron (NM_001135864, intron 1 of 3) -5971 NM_173802 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 242-2 chr1 84365381 84365830 + 0.833333 NA non-coding (NR_003927, exon 6 of 7) non-coding (NR_003927, exon 6 of 7) 19196 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 220.5-24 chr2 172375090 172375582 + 0.833333 NA Intergenic Intergenic -52000 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 188.334-3 chr17 30123743 30124302 + 0.833333 NA intron (NM_032141, intron 2 of 6) AluJr|SINE|Alu -6862 NR_036149 100423003 NR_036149 ENSG00000284399 MIR3184 - microRNA 3184 ncRNA 187.333-36 chr6 73640924 73641262 + 0.833333 NA intron (NM_012434, intron 3 of 10) AluSz|SINE|Alu 12899 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 175.667-16 chr14 39989878 39990199 + 0.833333 NA Intergenic L1MB8|LINE|L1 -557538 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 195.167-18 chr17 17142007 17142310 + 0.833333 NA intron (NM_001364716, intron 7 of 23) intron (NM_001364716, intron 7 of 23) 64175 NM_178836 201164 Hs.729079 NM_178836 ENSG00000179598 PLD6 ZUC phospholipase D family member 6 protein-coding 206.667-28 chr2 128991560 128991855 + 0.833333 NA Intergenic L1MD1|LINE|L1 127107 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 166.667-8 chr11 78857664 78857872 + 0.833333 NA intron (NM_001098816, intron 10 of 33) intron (NM_001098816, intron 10 of 33) -282904 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 227.167-22 chr4 65633657 65633973 + 0.833333 NA intron (NM_001281767, intron 2 of 16) intron (NM_001281767, intron 2 of 16) 35673 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 169-49 chr9 71816969 71817486 + 0.833333 NA Intergenic Intergenic -48714 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 210.333-14 chr17 34682524 34682820 + 0.833333 NA Intergenic Intergenic 101923 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 294-3 chr12 40226627 40227250 + 0.833333 NA intron (NM_198578, intron 2 of 50) intron (NM_198578, intron 2 of 50) 1941 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 178.333-20 chr2 139088274 139088619 + 0.833333 NA Intergenic L1MA7|LINE|L1 191122 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 197-39 chr8 135451382 135451946 + 0.833333 NA Intergenic Intergenic -5792 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 163.833-9 chr12 98646027 98646468 + 0.833333 NA intron (NM_001160, intron 1 of 25) intron (NM_001160, intron 1 of 25) 947 NM_181869 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 214.833-26 chrX 30736263 30736724 + 0.833333 NA Intergenic Intergenic 83134 NM_000167 2710 Hs.1466 NM_000167 ENSG00000198814 GK GK1|GKD glycerol kinase protein-coding 278.833-12 chr8 124340278 124340746 + 0.833333 NA intron (NM_194291, intron 1 of 6) MER34B-int|LTR|ERV1 32187 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 250.5-20 chr5 81664642 81665020 + 0.833333 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 86422 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 255-6 chr1 235590924 235591466 + 0.833333 NA intron (NM_004485, intron 1 of 2) intron (NM_004485, intron 1 of 2) 58589 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 245.333-21 chr3 116425464 116425869 + 0.833333 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 19821 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 202.167-36 chr8 51959633 51959905 + 0.833333 NA Intergenic Intergenic -60583 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 226.833-20 chr9 78240262 78240560 + 0.833333 NA intron (NM_001349840, intron 3 of 15) intron (NM_001349840, intron 3 of 15) 4336 NM_001330693 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 191.667-13 chr15 72563696 72564024 + 0.833333 NA intron (NM_005744, intron 7 of 13) intron (NM_005744, intron 7 of 13) -23357 NR_030359 693215 NR_030359 ENSG00000283798 MIR630 MIRN630|hsa-mir-630 microRNA 630 ncRNA 189.5-19 chr17 77502290 77502650 + 0.833333 NA Intergenic Intergenic -24531 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 164.5-2 chr1 45044831 45045029 + 0.833333 NA intron (NM_020883, intron 5 of 13) AluJb|SINE|Alu 32676 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 235.667-27 chr8 122351469 122351835 + 0.833333 NA Intergenic Intergenic 216992 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 244.333-33 chr6 132447877 132448263 + 0.833333 NA non-coding (NR_137169, exon 9 of 9) non-coding (NR_137169, exon 9 of 9) -46595 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 272-27 chr8 20122069 20122496 + 0.833333 NA Intergenic AluSx1|SINE|Alu 60854 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 180.333-47 chr6 53452663 53452989 + 0.833333 NA Intergenic Intergenic 92275 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 352.666-6 chr2 201618942 201619592 + 0.833333 NA promoter-TSS (NM_152525) promoter-TSS (NM_152525) -89 NM_001168216 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 176.5-5 chr11 81235958 81236224 + 0.833333 NA Intergenic Intergenic -473288 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 208.667-31 chr21 30850427 30850722 + 0.833333 NA Intergenic Intergenic -20815 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 214.833-11 chr20 4594014 4594317 + 0.833333 NA Intergenic LTR16A2|LTR|ERVL -92291 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 173.333-16 chr2 186444460 186444900 + 0.833333 NA Intergenic MLT1F|LTR|ERVL-MaLR -41580 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 244.167-20 chr3 109409954 109410418 + 0.833333 NA non-coding (NR_109842, exon 1 of 2) non-coding (NR_109842, exon 1 of 2) 196 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 199.333 chr1 26169547 26169856 + 0.833333 NA promoter-TSS (NM_015871) promoter-TSS (NM_015871) -207 NM_015871 51042 Hs.477273 NM_015871 ENSG00000142684 ZNF593 ZT86 zinc finger protein 593 protein-coding 258-2 chr1 195713699 195714050 + 0.833333 NA Intergenic L1ME5|LINE|L1 374841 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 179.5-14 chr13 27868892 27869346 + 0.833333 NA intron (NR_047484, intron 1 of 4) intron (NR_047484, intron 1 of 4) 48172 NR_047484 100861550 Hs.416201 NR_047484 PLUT HI-LNC71|PDX1-AS1|PLUTO PDX1 associated lncRNA, upregulator of transcription ncRNA 198-36 chr6 63536483 63536828 + 0.833333 NA Intergenic Intergenic -35357 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 213.5-17 chr21 29218132 29218468 + 0.833333 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 24806 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 165.167-9 chr13 102224671 102225063 + 0.833333 NA intron (NM_001321940, intron 1 of 5) intron (NM_001321940, intron 1 of 5) 85819 NM_001321932 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 209.333-22 chr2 199303622 199303961 + 0.833333 NA intron (NM_001172509, intron 10 of 10) intron (NM_001172509, intron 10 of 10) 154148 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 197-15 chr2 120077821 120078198 + 0.833333 NA intron (NM_001330307, intron 9 of 16) MSTA|LTR|ERVL-MaLR 64932 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 215.5-6 chr17 39138959 39139466 + 0.833333 NA intron (NM_020405, intron 2 of 13) intron (NM_020405, intron 2 of 13) 12425 NM_020405 57125 Hs.125036 NM_020405 ENSG00000161381 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 202.167-32 chr5 146203177 146203614 + 0.833333 NA promoter-TSS (NM_018989) promoter-TSS (NM_018989) -210 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 205.833 chr1 173562833 173563249 + 0.833333 NA intron (NM_178527, intron 9 of 27) intron (NM_178527, intron 9 of 27) 40031 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 170.333-26 chr16 81961170 81961473 + 0.833333 NA 3' UTR (NM_002661, exon 33 of 33) 3' UTR (NM_002661, exon 33 of 33) 50149 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 209.667-38 chr5 108186843 108187184 + 0.833333 NA intron (NM_001163315, intron 5 of 8) intron (NM_001163315, intron 5 of 8) 195085 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 195-7 chr12 15673992 15674329 + 0.833333 NA intron (NM_004447, intron 3 of 20) intron (NM_004447, intron 3 of 20) 115228 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 195.667-26 chr2 174688242 174688523 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -5483 NM_001077269 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 166.333-9 chr1 202105569 202105906 + 0.833333 NA Intergenic Intergenic -17180 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2|ETBRLP2 G protein-coupled receptor 37 like 1 protein-coding 191.334-4 chr15 59172664 59173329 + 0.833333 NA intron (NM_004998, intron 21 of 27) intron (NM_004998, intron 21 of 27) -1734 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 177-21 chr2 55050358 55050915 + 0.833333 NA promoter-TSS (NM_153828) promoter-TSS (NM_153828) -38 NM_001321860 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 192.333-20 chr17 58786686 58786970 + 0.833333 NA intron (NM_014906, intron 1 of 6) L1ME4c|LINE|L1 30959 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 248.333-13 chr16 35143495 35143811 + 0.833333 NA Intergenic AluSc8|SINE|Alu 26738 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 347-7 chr14 69999800 70000470 + 0.833333 NA intron (NM_001034852, intron 7 of 11) intron (NM_001034852, intron 7 of 11) 22002 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 165.167-11 chr14 66447679 66447899 + 0.833333 NA Intergenic Intergenic -38582 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 230.5 chr1 108719871 108720371 + 0.833333 NA intron (NM_001144937, intron 4 of 12) intron (NM_001144937, intron 4 of 12) 7213 NM_001144937 163479 Hs.258253 NM_173532 ENSG00000143107 FNDC7 - fibronectin type III domain containing 7 protein-coding 307.166 chr1 109283192 109283748 + 0.833333 NA promoter-TSS (NM_001350242) promoter-TSS (NM_001350242) -302 NM_001005290 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 189.333-5 chr11 110969483 110969851 + 0.833333 NA Intergenic Intergenic 127651 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 226.667-29 chr4 38442290 38442722 + 0.833333 NA intron (NR_110951, intron 6 of 7) L1ME1|LINE|L1 -67261 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 168.5-16 chr14 82596338 82596645 + 0.833333 NA Intergenic Intergenic -46141 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 246.167-24 chr22 26677241 26677703 + 0.833333 NA TTS (NR_003491) TTS (NR_003491) 4629 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 214.667-29 chr3 133927719 133928205 + 0.833333 NA TTS (NR_161373) TTS (NR_161373) 1850 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 193.5-36 chr4 66908839 66909269 + 0.833333 NA Intergenic L1ME1|LINE|L1 512946 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 218.333-6 chr14 23173126 23173613 + 0.833333 NA intron (NM_012244, intron 1 of 10) L2c|LINE|L2 10291 NM_012244 23428 Hs.596643 NM_012244 ENSG00000092068 SLC7A8 LAT2|LPI-PC1 solute carrier family 7 member 8 protein-coding 173.333-29 chr7 42075695 42076061 + 0.833333 NA intron (NM_000168, intron 4 of 14) intron (NM_000168, intron 4 of 14) 161331 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 218.667-24 chr3 16942281 16942622 + 0.833333 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 9255 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 258.333-20 chr7 106971218 106971774 + 0.833333 NA Intergenic HAL1ME|LINE|L1 -73209 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 222-30 chr8 129962743 129963029 + 0.833333 NA intron (NM_001353256, intron 2 of 13) MLT1K|LTR|ERVL-MaLR -23075 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 213.833-7 chr14 38197027 38197683 + 0.833333 NA Intergenic Intergenic -10549 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 187.333-14 chr11 114264405 114264848 + 0.833333 NA Intergenic MER21B|LTR|ERVL -31187 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 216.5-25 chr2 114111971 114112354 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -132178 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 228-5 chr1 214394328 214394810 + 0.833333 NA intron (NM_005401, intron 9 of 18) AluSx1|SINE|Alu 113410 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 232.333-25 chr9 1009039 1009584 + 0.833333 NA Intergenic Intergenic 32656 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 167.333-36 chr3 48736882 48737153 + 0.833333 NA Intergenic L1ME3B|LINE|L1 -19739 NM_001190316 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|InsP6K2|PIUS inositol hexakisphosphate kinase 2 protein-coding 212.167-3 chr11 105925288 105925786 + 0.833333 NA intron (NR_046356, intron 11 of 16) intron (NR_046356, intron 11 of 16) 96703 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 289-24 chr8 124048403 124049121 + 0.833333 NA intron (NR_103547, intron 3 of 4) MIRb|SINE|MIR -7980 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 219.833-19 chr22 27450916 27451463 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR 140538 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 221.333-16 chr22 43224463 43224915 + 0.833333 NA intron (NM_173050, intron 10 of 21) intron (NM_173050, intron 10 of 21) 12015 NR_134632 105373051 Hs.629290 NR_134632 ENSG00000236272 LOC105373051 - uncharacterized LOC105373051 ncRNA 225.667-38 chr8 104611531 104611801 + 0.833333 NA Intergenic L1PA15|LINE|L1 -22642 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 243.167-18 chr7 51679337 51679888 + 0.833333 NA Intergenic Intergenic -286356 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 170.667-11 chr16 62672438 62672724 + 0.833333 NA Intergenic Intergenic -636143 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 208.833-15 chr18 11138759 11139022 + 0.833333 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 9872 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 252.833-4 chr11 31440912 31441377 + 0.833333 NA intron (NM_001304274, intron 4 of 5) intron (NM_001304274, intron 4 of 5) 68478 NM_001304274 196294 Hs.502223 NM_144981 ENSG00000148950 IMMP1L IMMP1|IMP1|IMP1-LIKE inner mitochondrial membrane peptidase subunit 1 protein-coding 239.167-16 chr15 60660680 60661021 + 0.833333 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -20719 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 170.833-13 chr17 59499158 59499550 + 0.833333 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 27503 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 195.833-18 chr20 34062036 34062526 + 0.833333 NA intron (NM_007367, intron 2 of 8) intron (NM_007367, intron 2 of 8) 13162 NR_039911 100616434 NR_039911 ENSG00000264616 MIR4755 mir-4755 microRNA 4755 ncRNA 168.667-50 chr8 111317070 111317510 + 0.833333 NA Intergenic Intergenic -59349 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 203.667 chr1 20391525 20392000 + 0.833333 NA intron (NR_033887, intron 6 of 11) intron (NR_033887, intron 6 of 11) 37032 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 180.667-30 chr3 12392793 12393100 + 0.833333 NA intron (NM_001354669, intron 5 of 6) intron (NM_001354669, intron 5 of 6) 41444 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 175.667-2 chr1 69443623 69443935 + 0.833333 NA Intergenic ERVL-E-int|LTR|ERVL 10524 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 193-17 chr17 79996352 79996716 + 0.833333 NA intron (NM_019020, intron 3 of 11) L1MD1|LINE|L1 39338 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 181.5-41 chr6 62460786 62461144 + 0.833333 NA Intergenic Intergenic -174738 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 213.5-21 chr4 62689371 62689780 + 0.833333 NA Intergenic HERVL-int|LTR|ERVL -527810 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 334.333-5 chr13 32584398 32584845 + 0.833333 NA Intergenic L2c|LINE|L2 -1831 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 190.5-39 chr5 58604106 58604362 + 0.833333 NA intron (NM_138453, intron 1 of 4) L1PBa1|LINE|L1 21159 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 213.667-38 chr5 14285085 14285578 + 0.833333 NA intron (NM_007118, intron 3 of 56) intron (NM_007118, intron 3 of 56) 141989 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 203.667-63 chrX 113411411 113411899 + 0.833333 NA intron (NR_110399, intron 3 of 3) MSTB2|LTR|ERVL-MaLR 368928 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 236.5-25 chr22 39623039 39623487 + 0.833333 NA intron (NM_001003406, intron 4 of 35) (TG)n|Simple_repeat|Simple_repeat 52510 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 273.5-16 chr21 15896104 15896600 + 0.833333 NA Intergenic L1MA2|LINE|L1 166370 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 168.5-13 chr12 126421747 126422053 + 0.833333 NA intron (NR_147498, intron 2 of 3) L1PB4|LINE|L1 -4246 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 208-38 chr6 131735390 131735904 + 0.833333 NA intron (NM_005021, intron 21 of 24) intron (NM_005021, intron 21 of 24) -24630 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 223.667-27 chr19 45173620 45174009 + 0.833333 NA intron (NM_001270891, intron 1 of 5) MER5B|DNA|hAT-Charlie 4423 NM_001270893 79090 Hs.466929 NM_024108 ENSG00000007255 TRAPPC6A TRS33 trafficking protein particle complex 6A protein-coding 164.5-48 chr6 120570262 120570547 + 0.833333 NA Intergenic (TT)n|Simple_repeat|Simple_repeat 555225 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 230.667-4 chr11 75670648 75671187 + 0.833333 NA Intergenic Intergenic -2483 NM_207577 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 210-18 chr17 18319711 18320186 + 0.833333 NA intron (NM_144775, intron 1 of 1) AluSg|SINE|Alu 4655 NM_144775 140775 Hs.592944 NM_144775 ENSG00000176994 SMCR8 DENND8A SMCR8-C9orf72 complex subunit protein-coding 201.833-16 chr4 40917044 40917406 + 0.833333 NA intron (NM_173075, intron 9 of 16) intron (NM_173075, intron 9 of 16) -60033 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 175.5-35 chr22 43772755 43773166 + 0.833333 NA exon (NM_022785, exon 4 of 32) exon (NM_022785, exon 4 of 32) 39345 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 241.333-21 chr3 108144400 108144711 + 0.833333 NA Intergenic Intergenic 18734 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 204.667-28 chr2 200579615 200579964 + 0.833333 NA intron (NM_152524, intron 8 of 8) L1M3|LINE|L1 -6225 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 175-3 chr1 108532409 108532837 + 0.833333 NA Intergenic Intergenic -27477 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 254.667-7 chr14 74361177 74361642 + 0.833333 NA Intergenic AluSz|SINE|Alu 12938 NM_018228 55237 Hs.578167 NM_018228 ENSG00000133980 VRTN C14orf115|vertnin vertebrae development associated protein-coding 199.167-9 chr18 74964019 74964404 + 0.833333 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 241302 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 220.833-3 chr11 32034401 32034744 + 0.833333 NA Intergenic Intergenic 6746 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 329-9 chr4 130009430 130010102 + 0.833333 NA Intergenic Intergenic 238147 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 185.167-3 chr10 16845460 16845694 + 0.833333 NA intron (NM_001081, intron 60 of 66) L2a|LINE|L2 -28123 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 205.333-11 chr13 44491787 44492099 + 0.833333 NA intron (NM_183422, intron 1 of 2) L1ME3F|LINE|L1 -17642 NM_001243798 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 230.833-2 chr10 104286004 104286310 + 0.833333 NA intron (NM_001191014, intron 3 of 4) L1MB7|LINE|L1 10991 NM_001191014 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 227.667-17 chr16 78284310 78284783 + 0.833333 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 184892 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 270.333-13 chr8 105092268 105092750 + 0.833333 NA Intergenic Intergenic -225929 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 283.167-11 chr20 8054546 8054922 + 0.833333 NA Intergenic L1ME1|LINE|L1 -34973 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 194.5-33 chr3 26821075 26821485 + 0.833333 NA Intergenic MER61-int|LTR|ERV1 126723 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 253.5-14 chr15 33239344 33239797 + 0.833333 NA intron (NR_046005, intron 7 of 8) L1ME3|LINE|L1 7985 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 301-26 chr7 124118395 124119105 + 0.833333 NA Intergenic Tigger3c|DNA|TcMar-Tigger -85683 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 238.167-13 chr15 87854817 87855303 + 0.833333 NA Intergenic Intergenic 91208 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 189.333 chr10 20436567 20436930 + 0.833333 NA Intergenic L1PA4|LINE|L1 -115222 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 167-18 chr2 119824580 119825123 + 0.833333 NA intron (NM_002830, intron 2 of 26) AluSz|SINE|Alu 64929 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 236.667-14 chr21 32272568 32272891 + 0.833333 NA intron (NM_018944, intron 2 of 4) MER113|DNA|hAT-Charlie 6320 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 291.5-17 chr17 51852476 51853082 + 0.833333 NA intron (NM_001082533, intron 4 of 9) MIRc|SINE|MIR 305935 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 240.167-14 chr20 51160580 51160914 + 0.833333 NA Intergenic Intergenic -137640 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 384.333-6 chr5 17130079 17130858 + 0.833333 NA non-coding (NR_027253, exon 3 of 3) non-coding (NR_027253, exon 3 of 3) 25524 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 242.833-17 chr5 173916849 173917210 + 0.833333 NA intron (NM_001308193, intron 2 of 7) intron (NM_001308193, intron 2 of 7) 23978 NM_001308193 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 228-39 chr8 88247173 88247623 + 0.833333 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 80085 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 214.5-25 chr3 147870538 147870936 + 0.833333 NA Intergenic Intergenic -207422 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 280.833 chr1 118118848 118119493 + 0.833333 NA intron (NM_206996, intron 3 of 48) (AT)n|Simple_repeat|Simple_repeat 66058 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 186-7 chr12 10582044 10582327 + 0.833333 NA Intergenic L1M2|LINE|L1 17650 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 231.833-12 chr22 25640969 25641415 + 0.833333 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 76517 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 164.833-22 chr9 76280339 76280751 + 0.833333 NA intron (NM_001190482, intron 24 of 36) AluJo|SINE|Alu 113881 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 180.5-36 chr5 173914019 173914390 + 0.833333 NA intron (NM_001308193, intron 2 of 7) intron (NM_001308193, intron 2 of 7) 21153 NM_001308193 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 168.167-31 chr5 106376464 106377003 + 0.833333 NA Intergenic Intergenic 634281 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 258.5-13 chr14 49897667 49898083 + 0.833333 NA TTS (NM_001663) TTS (NM_001663) 4793 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 177.5-16 chr12 107030101 107030424 + 0.833333 NA intron (NM_004075, intron 1 of 12) MIRb|SINE|MIR -43096 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 277.667-14 chr19 28096581 28097320 + 0.833333 NA Intergenic Intergenic -303010 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 216.667-33 chr3 152835437 152835745 + 0.833333 NA 5' UTR (NM_002563, exon 1 of 1) 5' UTR (NM_002563, exon 1 of 1) 460 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 190.5-54 chr8 79613933 79614256 + 0.833333 NA intron (NM_007029, intron 1 of 4) intron (NM_007029, intron 1 of 4) 2977 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 273.667-5 chr12 14844150 14844918 + 0.833333 NA Intergenic Intergenic -1008 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 216.5-18 chr16 2344940 2345394 + 0.833333 NA intron (NR_003574, intron 1 of 16) intron (NR_003574, intron 1 of 16) 4245 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 324-18 chr5 151448188 151449128 + 0.833333 NA intron (NM_001349740, intron 1 of 11) intron (NM_001349740, intron 1 of 11) 1055 NM_001308150 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 225.5-35 chr9 133726288 133726727 + 0.833333 NA intron (NM_001134707, intron 6 of 20) intron (NM_001134707, intron 6 of 20) 11845 NM_001134707 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 316.667-4 chr16 88338137 88338871 + 0.833333 NA Intergenic Intergenic -88967 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 268.667-13 chr16 4141627 4142179 + 0.833333 NA Intergenic Intergenic -25461 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 207.334-10 chr7 65317079 65317740 + 0.833333 NA Intergenic Intergenic -56390 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 239.167-22 chr20 59672239 59672698 + 0.833333 NA intron (NM_001281507, intron 1 of 12) intron (NM_001281507, intron 1 of 12) -4193 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 233-34 chr8 36756836 36757471 + 0.833333 NA Intergenic MLT1E2|LTR|ERVL-MaLR -27221 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 196.333-7 chr11 102500003 102500346 + 0.833333 NA Intergenic Intergenic 30573 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 239.667-23 chr19 44774758 44775117 + 0.833333 NA Intergenic AluSz|SINE|Alu -2932 NM_001130852 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 189.333-12 chr12 115880647 115881067 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 267797 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 243.5-31 chr7 94626023 94626419 + 0.833333 NA intron (NM_001346717, intron 3 of 9) L1ME3F|LINE|L1 29912 NM_001346717 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 165.667-56 chr8 125321765 125322075 + 0.833333 NA intron (NM_001349486, intron 5 of 7) L1M5|LINE|L1 -108438 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 244-33 chr7 38080444 38080875 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR -97586 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 220.667-38 chr9 37398859 37399253 + 0.833333 NA Intergenic Kanga1d|DNA|TcMar-Tc2 -23640 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 177.833-10 chr14 20961175 20961540 + 0.833333 NA Intergenic AluY|SINE|Alu 5870 NM_002934 6036 Hs.728 NM_002934 ENSG00000169385 RNASE2 EDN|RAF3|RNS2 ribonuclease A family member 2 protein-coding 167.833-19 chr15 98902557 98902934 + 0.833333 NA intron (NM_000875, intron 5 of 20) intron (NM_000875, intron 5 of 20) 102911 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 237.167-9 chr16 11506148 11506638 + 0.833333 NA intron (NM_001370704, intron 8 of 66) MER63B|DNA|hAT-Blackjack 20854 NM_001370704 400499 Hs.459937 NM_001370704 ENSG00000188897 LOC400499 - putative uncharacterized protein LOC400499 protein-coding 183.333-57 chr6 42195164 42195602 + 0.833333 NA promoter-TSS (NM_002098) promoter-TSS (NM_002098) -427 NM_002098 2979 Hs.446529 NM_002098 ENSG00000112599 GUCA1B GCAP 2|GCAP2|GUCA2|RP48 guanylate cyclase activator 1B protein-coding 215.5 chr12 10749257 10749646 + 0.833333 NA promoter-TSS (NR_120463) promoter-TSS (NR_120463) -783 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 193.167-23 chr5 21091088 21091487 + 0.833333 NA Intergenic LTR16D|LTR|ERVL -368193 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 170-29 chr2 26865791 26866145 + 0.833333 NA intron (NM_001253724, intron 1 of 12) intron (NM_001253724, intron 1 of 12) 17544 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 278.5-15 chr3 100737187 100737627 + 0.833333 NA intron (NM_001007565, intron 6 of 7) intron (NM_001007565, intron 6 of 7) 27865 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 232.833-3 chr1 108060028 108060428 + 0.833333 NA Intergenic Intergenic -95048 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 194.5-31 chr22 32726284 32726753 + 0.833333 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -74298 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 477.333 chr1 32686043 32686824 + 0.833333 NA TTS (NM_001135255) TTS (NM_001135255) 16337 NM_030786 81493 Hs.712631 NM_030786 ENSG00000162520 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 168.667-25 chr21 31335799 31336256 + 0.833333 NA intron (NM_001353686, intron 2 of 27) MIRb|SINE|MIR 8327 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 232.833-24 chr3 153348532 153348846 + 0.833333 NA Intergenic Intergenic -135806 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 219.333-11 chr11 99183564 99183957 + 0.833333 NA intron (NM_001243270, intron 1 of 23) L2c|LINE|L2 162811 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 174.333-24 chr20 12644891 12645229 + 0.833333 NA Intergenic MIR|SINE|MIR 291903 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 185.667-37 chr5 105961367 105961667 + 0.833333 NA Intergenic Intergenic 862043 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 195.167-34 chr4 87124161 87124561 + 0.833333 NA intron (NM_005935, intron 11 of 19) intron (NM_005935, intron 11 of 19) 95907 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 198.667-25 chr2 114328520 114328759 + 0.833333 NA Intergenic LTR16A|LTR|ERVL -114002 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 264.333-3 chr1 233662806 233663378 + 0.833333 NA intron (NM_002245, intron 1 of 2) intron (NM_002245, intron 1 of 2) 38940 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 382.5-6 chr2 45411744 45412622 + 0.833333 NA intron (NM_018079, intron 19 of 20) L1ME2z|LINE|L1 -157242 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 195.167-16 chr16 1301044 1301434 + 0.833333 NA Intergenic Intergenic -7913 NM_194260 7329 Hs.302903 NM_003345 ENSG00000103275 UBE2I C358B7.1|P18|UBC9 ubiquitin conjugating enzyme E2 I protein-coding 265.333 chr1 68210831 68211218 + 0.833333 NA intron (NM_024911, intron 1 of 11) intron (NM_024911, intron 1 of 11) 21499 NM_024911 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 269.5-28 chr9 83979070 83979558 + 0.833333 NA intron (NM_031262, intron 1 of 16) intron (NM_031262, intron 1 of 16) 901 NM_031263 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 199.833-5 chr10 71402374 71402770 + 0.833333 NA intron (NM_052836, intron 1 of 12) MIRb|SINE|MIR 5638 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 184.5-31 chr22 22728602 22728983 + 0.833333 NA Intergenic Intergenic 82480 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 202.667-27 chr20 55922715 55923073 + 0.833333 NA Intergenic Intergenic 82625 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 199.333-36 chr4 104490999 104491273 + 0.833333 NA exon (NM_025212, exon 2 of 3) exon (NM_025212, exon 2 of 3) 171 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 260.667-11 chr12 128582741 128583123 + 0.833333 NA intron (NM_001136103, intron 3 of 8) FRAM|SINE|Alu 241026 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 173.167-33 chr4 150297805 150298037 + 0.833333 NA intron (NM_001199282, intron 53 of 56) intron (NM_001199282, intron 53 of 56) 219476 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 177.5-8 chr11 38365250 38365490 + 0.833333 NA Intergenic MIRb|SINE|MIR 280986 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 165.333-29 chr3 145281833 145282106 + 0.833333 NA Intergenic Intergenic 787216 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 205.667-6 chr10 88710411 88710760 + 0.833333 NA Intergenic L1ME2z|LINE|L1 -13959 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 167.333-16 chr12 1421288 1421618 + 0.833333 NA intron (NR_027948, intron 18 of 19) LTR8B|LTR|ERV1 -79038 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 182.333-22 chr5 55226622 55227042 + 0.833333 NA intron (NM_001190787, intron 2 of 6) CpG-22098 483 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 213.333-48 chr8 143993993 143994457 + 0.833333 NA TTS (NM_000837) TTS (NM_000837) 4167 NM_000837 2907 Hs.594634 NM_000837 ENSG00000178719 GRINA HNRGW|LFG1|NMDARA1|TMBIM3 glutamate ionotropic receptor NMDA type subunit associated protein 1 protein-coding 206.167-20 chr7 34281252 34281638 + 0.833333 NA Intergenic THE1D|LTR|ERVL-MaLR 375906 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 195.167-5 chr10 60153620 60154114 + 0.833333 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -12851 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 268.167-14 chr3 21893955 21894369 + 0.833333 NA Intergenic Intergenic -62977 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 284.833-3 chr11 11600088 11600487 + 0.833333 NA intron (NM_001363464, intron 1 of 9) L1PA8A|LINE|L1 21718 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 226-7 chr1 211884463 211884970 + 0.833333 NA Intergenic Intergenic 53755 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 325.833-6 chr7 31769843 31770710 + 0.833333 NA intron (NM_001191059, intron 18 of 18) L1MB7|LINE|L1 83061 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 187.167-25 chr5 140711411 140711708 + 0.833333 NA TTS (NR_026703) TTS (NR_026703) 283 NR_026703 56664 NR_026703 ENSG00000199990 VTRNA1-1 HVG1|VAULTRC1|VR1|hvg-1|vRNA vault RNA 1-1 ncRNA 222.167-19 chr18 72128085 72128616 + 0.833333 NA Intergenic L1MB5|LINE|L1 -346124 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 165.167-31 chr4 64085778 64086016 + 0.833333 NA Intergenic Intergenic 323553 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 281.333-15 chr18 72886780 72887205 + 0.833333 NA Intergenic L1ME3A|LINE|L1 17952 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 177.833-22 chr2 108551290 108551559 + 0.833333 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) 17069 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 354.333-11 chr8 144471794 144472486 + 0.833333 NA exon (NM_145754, exon 14 of 17) exon (NM_145754, exon 14 of 17) 3709 NM_003923 8928 Hs.708365 NM_003923 ENSG00000160973 FOXH1 FAST-1|FAST1 forkhead box H1 protein-coding 264.333-9 chr14 74077985 74078376 + 0.833333 NA intron (NM_001278593, intron 1 of 11) L2c|LINE|L2 6273 NM_001278593 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 174.833-5 chr10 68758691 68759109 + 0.833333 NA intron (NR_104262, intron 14 of 23) AluSz|SINE|Alu 3728 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 177.333-18 chr20 48011302 48011662 + 0.833333 NA Intergenic Intergenic -21365 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 164-47 chr6 3239568 3240007 + 0.833333 NA non-coding (NR_147505, exon 2 of 2) non-coding (NR_147505, exon 2 of 2) 8384 NR_147505 100422781 Hs.664539 NR_147505 LOC100422781 - uncharacterized LOC100422781 ncRNA 218.833-4 chr10 101934318 101934747 + 0.833333 NA intron (NM_024541, intron 23 of 25) intron (NM_024541, intron 23 of 25) -90612 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 176.167-28 chr3 87258034 87258304 + 0.833333 NA Intergenic Intergenic 18415 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 210.333-2 chr1 90045759 90046119 + 0.833333 NA Intergenic Intergenic 50829 NM_001320185 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 209.833-12 chr18 11387769 11388074 + 0.833333 NA Intergenic Intergenic -66557 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 174.833-15 chr2 191658890 191659192 + 0.833333 NA Intergenic L1ME4b|LINE|L1 -19031 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 171.5-43 chr7 106847824 106848430 + 0.833333 NA Intergenic Intergenic -17155 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 239.333-36 chr8 113521339 113521746 + 0.833333 NA Intergenic MER50-int|LTR|ERV1 -84603 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 218.167-6 chr11 81907251 81907678 + 0.833333 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) -16628 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 189.333-13 chr13 35940870 35941251 + 0.833333 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -85199 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 214.667-34 chr5 35279815 35280300 + 0.833333 NA Intergenic L1MA6|LINE|L1 -49570 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 177-38 chr7 4053128 4053698 + 0.833333 NA intron (NM_152744, intron 19 of 44) intron (NM_152744, intron 19 of 44) -76272 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 327.167 chr10 25059853 25060473 + 0.833333 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 2116 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 200-21 chr2 27535417 27535932 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie 38835 NM_001486 2646 Hs.89771 NM_001486 ENSG00000084734 GCKR FGQTL5|GKRP glucokinase regulator protein-coding 166.167-34 chr6 50657475 50657868 + 0.833333 NA Intergenic Intergenic -55873 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 197.167-14 chr15 88913249 88913590 + 0.833333 NA promoter-TSS (NM_001310321) promoter-TSS (NM_001310321) -40 NM_005928 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 302.167-3 chr11 25531141 25531581 + 0.833333 NA Intergenic Intergenic -657762 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 312.5-17 chr5 35519573 35520001 + 0.833333 NA Intergenic Intergenic -98076 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 248.667-14 chr18 7272195 7272564 + 0.833333 NA Intergenic Intergenic 41275 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 165.167-36 chr5 123922458 123922741 + 0.833333 NA Intergenic L1MEf|LINE|L1 377182 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 191.167-11 chr14 65295148 65295466 + 0.833333 NA Intergenic Intergenic 39876 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 237.667-10 chr15 44536050 44536645 + 0.833333 NA promoter-TSS (NM_003758) promoter-TSS (NM_003758) 553 NR_034171 645212 Hs.594287 NR_034170 EIF3J-DT EIF3J-AS1 EIF3J divergent transcript ncRNA 163.167-30 chr3 110973071 110973346 + 0.833333 NA Intergenic HAL1|LINE|L1 96751 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 250.333-12 chr2 207134500 207134853 + 0.833333 NA promoter-TSS (NM_001270944) promoter-TSS (NM_001270944) -539 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 193.167-17 chr2 113711068 113711484 + 0.833333 NA non-coding (NR_104470, exon 17 of 17) non-coding (NR_104470, exon 17 of 17) 10092 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 190.833-8 chr12 56552308 56552756 + 0.833333 NA intron (NM_002898, intron 1 of 13) intron (NM_002898, intron 1 of 13) 30712 NM_002898 5939 Hs.505729 NM_002898 ENSG00000076067 RBMS2 SCR3 RNA binding motif single stranded interacting protein 2 protein-coding 347-25 chr9 28764306 28764957 + 0.833333 NA intron (NM_001354574, intron 2 of 5) L1MA9|LINE|L1 -45326 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 282.833-7 chr17 18625817 18626214 + 0.833333 NA promoter-TSS (NR_036647) promoter-TSS (NR_036647) -398 NR_036647 284047 Hs.448012 NR_036647 ENSG00000154874 CCDC144B - coiled-coil domain containing 144B (pseudogene) pseudo 265.833-13 chr2 233055167 233055525 + 0.833333 NA Intergenic Intergenic -4996 NM_001017915 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 228.5-37 chr9 81381615 81382021 + 0.833333 NA Intergenic Intergenic 307717 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 248.667 chr1 20633458 20633954 + 0.833333 NA promoter-TSS (NR_106732) promoter-TSS (NR_106732) 27 NR_106732 102464833 NR_106732 ENSG00000284005 MIR6084 hsa-mir-6084 microRNA 6084 ncRNA 164.167-59 chrX 103711678 103711919 + 0.833333 NA intron (NM_182541, intron 1 of 2) intron (NM_182541, intron 1 of 2) 889 NM_182541 203562 Hs.98843 NM_182541 ENSG00000179363 TMEM31 - transmembrane protein 31 protein-coding 214.667-9 chr12 58131990 58132365 + 0.833333 NA Intergenic Intergenic 44285 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 175.833-42 chr8 100128292 100128662 + 0.833333 NA Intergenic Intergenic 17340 NM_001029860 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 237-19 chr2 76690463 76690844 + 0.833333 NA Intergenic Intergenic -295312 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 334.833 chr1 88870085 88870773 + 0.833333 NA intron (NM_001514, intron 2 of 6) intron (NM_001514, intron 2 of 6) 21138 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 250.167-4 chr12 25986164 25986768 + 0.833333 NA intron (NM_001164747, intron 1 of 5) intron (NM_001164747, intron 1 of 5) 12711 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 230.5-33 chr7 145759260 145759642 + 0.833333 NA Intergenic L1MB1|LINE|L1 -923398 NM_001350886 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 182.167-12 chr2 77705737 77706141 + 0.833333 NA Intergenic Intergenic -183506 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 207-31 chr8 38464818 38465296 + 0.833333 NA intron (NM_001174067, intron 1 of 18) intron (NM_001174067, intron 1 of 18) 2667 NM_001174065 2260 Hs.264887 NM_015850 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 239.5-31 chr5 99806575 99807018 + 0.833333 NA Intergenic L2c|LINE|L2 272806 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 213.667-48 chr9 31817029 31817412 + 0.833333 NA Intergenic L2|LINE|L2 -435730 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 216.667-6 chr11 27696754 27697141 + 0.833333 NA intron (NR_033312, intron 8 of 8) intron (NR_033312, intron 8 of 8) 2720 NM_170734 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 167.833-49 chr8 138935568 138935794 + 0.833333 NA Intergenic Intergenic -21640 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 178.833-11 chr15 64794927 64795287 + 0.833333 NA Intergenic AluSx|SINE|Alu -19518 NR_138350 348093 Hs.436518 NM_194272 ENSG00000166831 RBPMS2 - RNA binding protein, mRNA processing factor 2 protein-coding 179.5-12 chr12 89257324 89257698 + 0.833333 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 94990 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 188.167-4 chr1 67339912 67340146 + 0.833333 NA intron (NM_001319233, intron 9 of 15) intron (NM_001319233, intron 9 of 15) 32665 NM_001258215 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 267.5-30 chr3 55950933 55951307 + 0.833333 NA intron (NR_132749, intron 11 of 17) L2a|LINE|L2 -98526 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 234.333-33 chr6 103122912 103123296 + 0.833333 NA Intergenic Intergenic 1724119 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 208.833-3 chr1 182238765 182239183 + 0.833333 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 75087 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 194.5-32 chr3 7165351 7165743 + 0.833333 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) -271530 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 167.833-20 chr17 71412739 71412977 + 0.833333 NA Intergenic Intergenic -210679 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 266.5-5 chr1 170807812 170808412 + 0.833333 NA Intergenic Intergenic -127359 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 203-3 chr1 241612411 241612766 + 0.833333 NA intron (NM_014322, intron 1 of 3) LTR26|LTR|ERV1 23342 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 169.833-10 chr12 119098576 119098891 + 0.833333 NA intron (NM_194286, intron 1 of 12) L2a|LINE|L2 77751 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 206.5-54 chr7 127662467 127662853 + 0.833333 NA intron (NM_014390, intron 1 of 23) intron (NM_014390, intron 1 of 23) 10466 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 233.667-20 chr19 45402473 45402891 + 0.833333 NA intron (NM_001142502, intron 1 of 12) intron (NM_001142502, intron 1 of 12) 2387 NM_006663 10848 Hs.466937 NM_006663 ENSG00000104881 PPP1R13L IASPP|NKIP1|RAI|RAI4 protein phosphatase 1 regulatory subunit 13 like protein-coding 171-19 chr14 42654658 42654987 + 0.833333 NA Intergenic MER4-int|LTR|ERV1 1047966 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 168.667-47 chr8 49611209 49611711 + 0.833333 NA Intergenic Cheshire|DNA|hAT-Charlie -99280 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 219-9 chr15 86855569 86855923 + 0.833333 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -77134 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 169.667-12 chr10 88186910 88187141 + 0.833333 NA Intergenic Intergenic 323400 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 197.833-31 chr8 71656362 71656819 + 0.833333 NA Intergenic Intergenic -108496 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 169-28 chr2 18514513 18514884 + 0.833333 NA Intergenic Intergenic 45955 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 191.667-33 chr3 37236102 37236373 + 0.833333 NA Intergenic Intergenic -7034 NM_002078 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 277.667-24 chr4 74035286 74035819 + 0.833333 NA Intergenic L1MD3|LINE|L1 3137 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 225.833-26 chr8 87702677 87703069 + 0.833333 NA Intergenic L1MA3|LINE|L1 171142 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 283.667-13 chr6 52667175 52667734 + 0.833333 NA non-coding (NR_024403, exon 2 of 2) non-coding (NR_024403, exon 2 of 2) 3053 NR_024403 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 227.333 chr1 28840735 28841205 + 0.833333 NA intron (NM_000911, intron 1 of 2) MIR|SINE|MIR 28800 NM_000911 4985 Hs.372 NM_000911 ENSG00000116329 OPRD1 DOP|DOR|DOR1|OPRD opioid receptor delta 1 protein-coding 204.667-40 chr8 118880230 118880714 + 0.833333 NA Intergenic Intergenic 71413 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 283.333-15 chr5 20250361 20250712 + 0.833333 NA intron (NM_001291956, intron 2 of 14) AluSc|SINE|Alu -55015 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 276.167-7 chr13 38763632 38764107 + 0.833333 NA intron (NM_207361, intron 2 of 23) intron (NM_207361, intron 2 of 23) 63722 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 203.5-45 chr9 74274265 74274545 + 0.833333 NA Intergenic Intergenic -97126 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 197.667-39 chr4 103916889 103917283 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -197101 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 247.667-9 chr14 56634079 56634500 + 0.833333 NA intron (NM_017799, intron 13 of 15) intron (NM_017799, intron 13 of 15) 54491 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 165.167-25 chr22 38981197 38981558 + 0.833333 NA promoter-TSS (NM_004900) promoter-TSS (NM_004900) -970 NM_001270411 9582 Hs.226307 NM_004900 ENSG00000179750 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme catalytic subunit 3B protein-coding 197.833-3 chr1 107408656 107408994 + 0.833333 NA intron (NM_014917, intron 5 of 5) intron (NM_014917, intron 5 of 5) 260756 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 165.167-6 chr11 118956703 118957018 + 0.833333 NA intron (NM_006760, intron 1 of 4) intron (NM_006760, intron 1 of 4) 562 NM_006760 7379 Hs.379613 NM_006760 ENSG00000110375 UPK2 UP2|UPII uroplakin 2 protein-coding 221.167-29 chr9 71068453 71068851 + 0.833333 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 52969 NM_001366152 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 193.833-14 chr18 696121 696638 + 0.833333 NA intron (NM_001354068, intron 2 of 12) AluY|SINE|Alu 16251 NM_001354068 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 212.333-9 chr12 10071596 10071884 + 0.833333 NA intron (NM_001297750, intron 6 of 6) intron (NM_001297750, intron 6 of 6) 27245 NM_001297748 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 167.5-42 chr8 120103364 120103606 + 0.833333 NA Intergenic L1MC4|LINE|L1 -21617 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 255.833-20 chr8 78523275 78523758 + 0.833333 NA intron (NM_181839, intron 1 of 2) intron (NM_181839, intron 1 of 2) 7176 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 180.333-7 chr10 80114785 80115184 + 0.833333 NA Intergenic MER92-int|LTR|ERV1 -16677 NR_138551 219348 Hs.204947 NM_001012973 ENSG00000189129 PLAC9 - placenta associated 9 protein-coding 267.167-13 chr8 15087231 15088186 + 0.833333 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 150723 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 183-12 chr12 4436673 4437022 + 0.833333 NA intron (NM_020996, intron 2 of 2) intron (NM_020996, intron 2 of 2) 8767 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 175.333-42 chr4 53135479 53135967 + 0.833333 NA intron (NM_152540, intron 5 of 8) AluSc|SINE|Alu 230338 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 222.167-14 chr14 59528261 59528730 + 0.833333 NA intron (NM_001164399, intron 14 of 19) HAL1|LINE|L1 43978 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 183.5-39 chr5 108655961 108656230 + 0.833333 NA Intergenic Intergenic 72166 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 209.833-25 chr9 76816847 76817137 + 0.833333 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) 52556 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 260.5-8 chr14 48123144 48123649 + 0.833333 NA Intergenic Intergenic -328382 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 199-4 chr1 197870117 197870569 + 0.833333 NA Intergenic Intergenic -32287 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 228.5-21 chr3 107480304 107480596 + 0.833333 NA Intergenic L1MB8|LINE|L1 -42512 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 196.833-5 chr13 69773646 69773884 + 0.833333 NA intron (NM_001286725, intron 6 of 9) intron (NM_001286725, intron 6 of 9) -333448 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 178-34 chr4 137106837 137107325 + 0.833333 NA intron (NR_149105, intron 1 of 3) intron (NR_149105, intron 1 of 3) -86675 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 163.167-31 chr4 46766867 46767351 + 0.833333 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 142136 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 331.667 chr1 40337666 40338223 + 0.833333 NA Intergenic MIRb|SINE|MIR -20658 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 188.667-5 chr10 101062733 101063023 + 0.833333 NA exon (NM_030929, exon 2 of 5) exon (NM_030929, exon 2 of 5) 1636 NM_030929 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 189.5-25 chr21 29071638 29071966 + 0.833333 NA intron (NM_001282909, intron 1 of 13) L2a|LINE|L2 1846 NM_006585 10694 Hs.125113 NM_006585 ENSG00000156261 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1 subunit 8 protein-coding 260.833-9 chr3 47016329 47016733 + 0.833333 NA non-coding (NR_146158, exon 22 of 22) non-coding (NR_146158, exon 22 of 22) 4989 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 265.667-21 chr7 42567688 42568077 + 0.833333 NA Intergenic UCON132b|DNA|hAT-Tip100 138565 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 187.667-17 chr14 43157412 43157713 + 0.833333 NA Intergenic Intergenic 1349721 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 316.167-3 chr12 8026618 8027140 + 0.833333 NA Intergenic Intergenic -5837 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 179.667-51 chr8 119273485 119273945 + 0.833333 NA Intergenic L1MC1|LINE|L1 -26858 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 176-17 chr17 64236963 64237182 + 0.833333 NA intron (NM_018469, intron 1 of 11) L2b|LINE|L2 -6338 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 175.834-5 chr17 57458707 57459271 + 0.833333 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 64608 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 255.5-25 chr3 14207059 14207557 + 0.833333 NA Intergenic MER5B|DNA|hAT-Charlie 28491 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 213.167-30 chr7 78959624 78959909 + 0.833333 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -49222 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 347.667 chr1 117509740 117510542 + 0.833333 NA intron (NM_006699, intron 12 of 12) L1ME4b|LINE|L1 95629 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 213.333-28 chr4 87391034 87391413 + 0.833333 NA promoter-TSS (NM_016245) promoter-TSS (NM_016245) -35 NM_016245 51170 Hs.594923 NM_016245 ENSG00000198189 HSD17B11 17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2 hydroxysteroid 17-beta dehydrogenase 11 protein-coding 330.833-10 chr2 50781408 50781943 + 0.833333 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -85413 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 232-25 chr2 173600080 173600617 + 0.833333 NA Intergenic Intergenic 245476 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 184.5 chr1 42327105 42327455 + 0.833333 NA intron (NM_001198851, intron 1 of 14) MamRTE1|LINE|RTE-BovB 7675 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 183.5-14 chr15 71011988 71012372 + 0.833333 NA intron (NM_017691, intron 13 of 15) intron (NM_017691, intron 13 of 15) 119737 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 168.5-6 chr10 61317119 61317405 + 0.833333 NA Intergenic MIR|SINE|MIR -135377 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 247.333-12 chr2 169141550 169141909 + 0.833333 NA intron (NM_004525, intron 71 of 78) intron (NM_004525, intron 71 of 78) 60622 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 248.5-34 chr6 75855281 75855670 + 0.833333 NA intron (NM_001300899, intron 12 of 32) intron (NM_001300899, intron 12 of 32) 106236 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 193.667-6 chr1 162394246 162394685 + 0.833333 NA TTS (NM_053282) TTS (NM_053282) 12737 NM_001085375 400793 Hs.447011 NM_001085375 ENSG00000239887 C1orf226 - chromosome 1 open reading frame 226 protein-coding 348.167-11 chr5 141363259 141363880 + 0.833333 NA promoter-TSS (NM_032054) promoter-TSS (NM_032054) -762 NM_018918 56110 Hs.368160 NM_018918 ENSG00000253485 PCDHGA5 CDH-GAMMA-A5|ME3|PCDH-GAMMA-A5 protocadherin gamma subfamily A, 5 protein-coding 184.167-20 chr2 105531755 105532163 + 0.833333 NA Intergenic L1ME3A|LINE|L1 78600 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 168.167-6 chr11 61361911 61362193 + 0.833333 NA promoter-TSS (NM_001330281) promoter-TSS (NM_001330281) -170 NM_153611 220002 Hs.22546 NM_153611 ENSG00000162144 CYB561A3 CYBASC3|LCYTB cytochrome b561 family member A3 protein-coding 165-42 chr5 128866177 128866413 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -98832 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 165.833-2 chr1 47176849 47177095 + 0.833333 NA Intergenic Intergenic -2278 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 233.167-9 chr15 87039261 87039551 + 0.833333 NA Intergenic L1MEf|LINE|L1 -50980 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 221.5-25 chr6 74477512 74477875 + 0.833333 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 408242 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 203.333-50 chr5 132385513 132385811 + 0.833333 NA intron (NM_003060, intron 4 of 9) intron (NM_003060, intron 4 of 9) -15746 NR_110997 553103 Hs.570908 NR_110997 ENSG00000233006 MIR3936HG SLC22A5-AS1 MIR3936 host gene ncRNA 264.5-17 chr3 633151 633711 + 0.833333 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 41326 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 198.833-10 chr13 20435110 20435532 + 0.833333 NA intron (NM_001363647, intron 3 of 6) intron (NM_001363647, intron 3 of 6) -1475 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 167-17 chr2 79498921 79499259 + 0.833333 NA intron (NR_110289, intron 2 of 4) intron (NR_110289, intron 2 of 4) 1754 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 175.333-9 chr12 79870528 79870799 + 0.833333 NA intron (NM_001244990, intron 3 of 24) intron (NM_001244990, intron 3 of 24) 43248 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 220.333 chr1 50979409 50979859 + 0.833333 NA Intergenic Intergenic 9389 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 275.5-18 chr3 16249170 16249516 + 0.833333 NA Intergenic MIRb|SINE|MIR 15600 NM_001047434 285381 Hs.388087 NM_206831 ENSG00000154813 DPH3 DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 diphthamide biosynthesis 3 protein-coding 172.5-14 chr15 55116673 55117083 + 0.833333 NA Intergenic LTR78|LTR|ERV1 60131 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 212-41 chr6 71520762 71521076 + 0.833333 NA Intergenic L1MEf|LINE|L1 99892 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 205-14 chr2 137468731 137469288 + 0.833333 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 458923 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 201.333-15 chr14 92040437 92040885 + 0.833333 NA promoter-TSS (NM_001321851) promoter-TSS (NM_001321851) -602 NM_004239 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|ODCD|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 222.5-8 chr10 33763513 33763883 + 0.833333 NA intron (NR_038932, intron 2 of 2) intron (NR_038932, intron 2 of 2) 8982 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 204.667-12 chr14 60884845 60885323 + 0.833333 NA intron (NM_001177963, intron 6 of 6) L1MA2|LINE|L1 95995 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 187.5-32 chr5 136034483 136035063 + 0.833333 NA intron (NM_000358, intron 2 of 16) intron (NM_000358, intron 2 of 16) 5785 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 166.167-10 chr14 25407562 25407769 + 0.833333 NA Intergenic MIR|SINE|MIR -357368 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 498.667 chr11 25733210 25734601 + 0.833333 NA Intergenic Intergenic -455218 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 191.334-5 chr15 59425533 59426308 + 0.833333 NA Intergenic Intergenic -12266 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 212-4 chr1 147244007 147244535 + 0.833333 NA intron (NM_001348452, intron 1 of 22) intron (NM_001348452, intron 1 of 22) 1129 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 168.667-20 chr17 58474348 58474640 + 0.833333 NA intron (NM_001080439, intron 2 of 5) intron (NM_001080439, intron 2 of 5) 13914 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 194.5-16 chr14 51566349 51566799 + 0.833333 NA intron (NR_047477, intron 2 of 3) intron (NR_047477, intron 2 of 3) 33378 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 177.167-22 chr6 48111447 48111841 + 0.833333 NA Intergenic Intergenic -42955 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 170.833-21 chr20 14841565 14841799 + 0.833333 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 87836 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 210.333-4 chr1 179205207 179205627 + 0.833333 NA intron (NM_007314, intron 1 of 11) MLT1I|LTR|ERVL-MaLR 24260 NM_001168236 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 195-3 chr10 97595722 97596243 + 0.833333 NA intron (NM_001134670, intron 1 of 2) MIRc|SINE|MIR 6261 NM_001009997 414157 Hs.662302 NM_001009997 ENSG00000203942 C10orf62 bA548K23.1 chromosome 10 open reading frame 62 protein-coding 172-32 chr3 63642415 63643112 + 0.833333 NA Intergenic MIRb|SINE|MIR -9912 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 175.333-44 chr5 63724581 63724896 + 0.833333 NA Intergenic Intergenic 237554 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 172.333-29 chr2 38729231 38729540 + 0.833333 NA intron (NM_138801, intron 4 of 6) (ATTT)n|Simple_repeat|Simple_repeat 21976 NM_001031684 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 178.167-4 chr11 68219525 68219747 + 0.833333 NA Intergenic (CTT)n|Simple_repeat|Simple_repeat -5988 NM_001300909 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 218-28 chr3 116102310 116102587 + 0.833333 NA intron (NM_001318915, intron 1 of 8) MLT2B4|LTR|ERVL -197322 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 296.667-16 chr4 49120528 49121203 + 0.833333 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 134223 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 185.5-5 chr10 64823908 64824203 + 0.833333 NA Intergenic Intergenic -1473 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 227.167-23 chr5 45039748 45040282 + 0.833333 NA Intergenic Intergenic 231068 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 211.333 chr1 67616095 67616402 + 0.833333 NA Intergenic (TTGT)n|Simple_repeat|Simple_repeat -68953 NM_001199741 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 192.833-8 chr10 112919598 112919934 + 0.833333 NA Intergenic Intergenic -30481 NM_030756 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 285.833-9 chr4 55139776 55140142 + 0.833333 NA Intergenic MLT1F|LTR|ERVL-MaLR -14364 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 204.333-32 chr3 187310625 187310931 + 0.833333 NA Intergenic L1MA8|LINE|L1 -18756 NM_001879 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 170.333-45 chr5 59708414 59708804 + 0.833333 NA intron (NM_001165899, intron 3 of 16) LTR82B|LTR|ERVL -4906 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 186.833-10 chr17 70243961 70244208 + 0.833333 NA Intergenic Intergenic 74549 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 172.333-37 chr22 26409880 26410285 + 0.833333 NA Intergenic Intergenic -19178 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 257-30 chr6 91201519 91202075 + 0.833333 NA Intergenic Intergenic -319863 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 163.667-51 chr6 46099009 46099418 + 0.833333 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) -18865 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 268.5 chr1 50367631 50368064 + 0.833333 NA Intergenic HAL1|LINE|L1 55596 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 178.667-34 chr4 105544490 105544779 + 0.833333 NA Intergenic Intergenic -7986 NM_001242729 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 230-39 chr7 148575368 148575743 + 0.833333 NA Intergenic LTR16A2|LTR|ERVL -15211 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 206.333-24 chr2 178786689 178787148 + 0.833333 NA intron (NM_133379, intron 13 of 45) intron (NM_133379, intron 13 of 45) 9992 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 242.167-24 chr5 121139174 121139578 + 0.833333 NA Intergenic Intergenic -183174 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 164.833-3 chr11 113472315 113472662 + 0.833333 NA intron (NM_016574, intron 1 of 6) intron (NM_016574, intron 1 of 6) 2791 NM_016574 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 166.333-52 chr7 102832551 102832912 + 0.833333 NA intron (NR_105043, intron 18 of 20) intron (NR_105043, intron 18 of 20) -80269 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 184.667 chr1 24541186 24541414 + 0.833333 NA TTS (NM_001251977) TTS (NM_001251977) 14724 NR_109781 100506985 Hs.607088 NR_109781 NCMAP-DT - NCMAP divergent transcript ncRNA 261.167 chr1 112715297 112715753 + 0.833333 NA promoter-TSS (NM_005167) promoter-TSS (NM_005167) -197 NM_005167 333926 Hs.655231 NM_005167 ENSG00000155367 PPM1J PP2CZ|PP2Czeta|PPP2CZ protein phosphatase, Mg2+/Mn2+ dependent 1J protein-coding 164.5-43 chr5 85325524 85325784 + 0.833333 NA Intergenic Intergenic -940774 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 271.333-28 chr8 119531169 119531532 + 0.833333 NA Intergenic Intergenic 61658 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 215.333-21 chr14 72405854 72406346 + 0.833333 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -110720 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 234-14 chr13 71483171 71483592 + 0.833333 NA intron (NM_080759, intron 7 of 10) intron (NM_080759, intron 7 of 10) 383811 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 246-12 chr15 59095656 59096117 + 0.833333 NA 3' UTR (NM_001330331, exon 14 of 14) 3' UTR (NM_001330331, exon 14 of 14) -9260 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 195.333-6 chr10 82812231 82812561 + 0.833333 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -579476 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 185.667-45 chr8 99369679 99369977 + 0.833333 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 166902 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 171.833-14 chr2 179173600 179173879 + 0.833333 NA intron (NM_178123, intron 4 of 17) MER58A|DNA|hAT-Charlie 91093 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 203.5-41 chr8 120460801 120461158 + 0.833333 NA intron (NM_022045, intron 8 of 21) intron (NM_022045, intron 8 of 21) 15560 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 179.167-4 chr1 180642379 180642766 + 0.833333 NA intron (NR_137330, intron 1 of 12) MIRb|SINE|MIR 10550 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 276.167-14 chr4 34953675 34954294 + 0.833333 NA Intergenic Intergenic -684237 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 183.333-9 chr10 65453759 65454098 + 0.833333 NA Intergenic Intergenic -117497 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 220.167-7 chr12 6346867 6347276 + 0.833333 NA 3' UTR (NM_001159576, exon 12 of 12) 3' UTR (NM_001159576, exon 12 of 12) -4954 NM_001065 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 233.833-21 chr8 51561637 51562062 + 0.833333 NA intron (NM_144651, intron 3 of 22) L1MB4|LINE|L1 247596 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 179.333-23 chr2 34919707 34920040 + 0.833333 NA Intergenic L1MC1|LINE|L1 242316 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 231.667-2 chr10 130545862 130546167 + 0.833333 NA Intergenic Intergenic 409605 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 270-43 chr9 17063372 17063771 + 0.833333 NA Intergenic Intergenic -71469 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 352.833-2 chr5 151315900 151316484 + 0.833333 NA 3' UTR (NM_181776, exon 10 of 10) 3' UTR (NM_181776, exon 10 of 10) -12426 NM_001145017 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 206.167-23 chr8 83057408 83057697 + 0.833333 NA Intergenic Intergenic 145448 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 182-40 chr5 154649319 154649612 + 0.833333 NA Intergenic MLT1F2|LTR|ERVL-MaLR -33514 NM_001367715 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 196.333-3 chr1 171498588 171498823 + 0.833333 NA intron (NM_015172, intron 1 of 33) intron (NM_015172, intron 1 of 33) 13175 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 190.5-46 chr7 1802713 1803188 + 0.833333 NA Intergenic Intergenic 41303 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 210-46 chr8 125031755 125032218 + 0.833333 NA intron (NM_014846, intron 27 of 28) intron (NM_014846, intron 27 of 28) 33481 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 300.833-3 chr12 111800111 111800657 + 0.833333 NA TTS (NR_106819) TTS (NR_106819) 550 NR_106819 102465456 NR_106819 ENSG00000274697 MIR6761 hsa-mir-6761 microRNA 6761 ncRNA 221-38 chr9 85116631 85117098 + 0.833333 NA Intergenic Intergenic 410963 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 233.5-4 chr10 9062018 9062424 + 0.833333 NA Intergenic Intergenic 164232 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 226.667-6 chr10 82150627 82151032 + 0.833333 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 82091 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 353.167-3 chr18 2161535 2162255 + 0.833333 NA Intergenic Intergenic 409610 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 164-18 chr14 54675523 54675852 + 0.833333 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -79146 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 187.833-8 chr11 122373842 122374211 + 0.833333 NA intron (NR_137179, intron 1 of 4) L2a|LINE|L2 -6038 NR_137192 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 281.333-2 chr10 16010420 16011061 + 0.833333 NA Intergenic MIR1_Amn|SINE|MIR -150207 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 246.333-3 chr1 95064712 95065245 + 0.833333 NA exon (NM_001305242, exon 2 of 5) exon (NM_001305242, exon 2 of 5) 3382 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 190.667-11 chr11 75023950 75024312 + 0.833333 NA Intergenic Intergenic 35198 NM_001367866 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 180-57 chr7 48090259 48090696 + 0.833333 NA intron (NR_109837, intron 2 of 6) intron (NR_109837, intron 2 of 6) 1212 NM_001287429 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 293.667-21 chr5 58885592 58886294 + 0.833333 NA Intergenic MIR3|SINE|MIR 113955 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 309.667-3 chr10 80854577 80854990 + 0.833333 NA Intergenic Intergenic 204986 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 266.5-29 chr8 133433525 133434118 + 0.833333 NA Intergenic LTR33A_|LTR|ERVL -136517 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 165-26 chr19 48021338 48021659 + 0.833333 NA intron (NM_022142, intron 5 of 6) AluSz|SINE|Alu 22581 NM_019855 56344 Hs.117694 NM_016367 ENSG00000105507 CABP5 CABP3 calcium binding protein 5 protein-coding 197.333-28 chr5 24909513 24909824 + 0.833333 NA Intergenic MER77|LTR|ERVL -69085 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 219-34 chr8 26386930 26387327 + 0.833333 NA intron (NM_004331, intron 1 of 5) intron (NM_004331, intron 1 of 5) -3285 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 191.833-27 chr9 99075720 99076015 + 0.833333 NA Intergenic MamTip1|DNA|hAT-Tip100 -29246 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 214.667-22 chr2 238435265 238435716 + 0.833333 NA intron (NM_001330196, intron 2 of 3) MIRc|SINE|MIR 8563 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 190.5-21 chr18 76879084 76879538 + 0.833333 NA intron (NM_001306089, intron 7 of 30) L1MC2|LINE|L1 55151 NM_007345 7776 Hs.719137 NM_007345 ENSG00000130856 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding 402.667-15 chr3 156541010 156541701 + 0.833333 NA 3' UTR (NM_001308205, exon 5 of 5) 3' UTR (NM_001308205, exon 5 of 5) 12770 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 192.833-22 chr2 196188691 196189055 + 0.833333 NA Intergenic Intergenic -17295 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 286-4 chr12 67070562 67071344 + 0.833333 NA Intergenic Intergenic 25331 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 249-9 chr14 59585819 59586302 + 0.833333 NA Intergenic Intergenic -9248 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 257.667-17 chr3 187323114 187323726 + 0.833333 NA Intergenic MER4A|LTR|ERV1 -31398 NM_001879 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 222.667-2 chr1 57976755 57977235 + 0.833333 NA intron (NM_001353980, intron 1 of 5) L2c|LINE|L2 116414 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 267.167-6 chr19 19342870 19343311 + 0.833333 NA intron (NM_015329, intron 9 of 18) intron (NM_015329, intron 9 of 18) 22261 NM_015329 23383 Hs.654939 NM_015329 ENSG00000129933 MAU2 KIAA0892|MAU2L|SCC4|mau-2 MAU2 sister chromatid cohesion factor protein-coding 242.333-30 chrX 120506742 120507310 + 0.833333 NA Intergenic L1MA1|LINE|L1 -37677 NM_013995 3920 Hs.496684 NM_002294 ENSG00000005893 LAMP2 CD107b|LAMP-2|LAMPB|LGP-96|LGP110 lysosomal associated membrane protein 2 protein-coding 271-32 chr8 113355269 113355688 + 0.833333 NA intron (NM_001363185, intron 1 of 66) MLT1A|LTR|ERVL-MaLR 21674 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 202.5-2 chr1 62697149 62697675 + 0.833333 NA Intergenic Intergenic -9026 NM_001272002 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 200.834-6 chr4 75847010 75847666 + 0.833333 NA Intergenic AluSx|SINE|Alu 55114 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 204.833 chr1 116776304 116776563 + 0.833333 NA Intergenic L1MC1|LINE|L1 22003 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 171.333-60 chrX 77006012 77006273 + 0.833333 NA promoter-TSS (NR_029905) promoter-TSS (NR_029905) -641 NR_029905 442899 NR_029905 ENSG00000207995 MIR325 MIRN325|hsa-mir-325 microRNA 325 ncRNA 191.833-10 chr17 64429123 64429427 + 0.833333 NA Intergenic MER41-int|LTR|ERV1 -19840 NM_001291316 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 245.333-29 chr8 131244338 131244891 + 0.833333 NA Intergenic L1ME4c|LINE|L1 -203705 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 192.167-27 chr4 56829540 56829859 + 0.833333 NA Intergenic AluSx|SINE|Alu -7830 NM_021114 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 203.167-5 chr14 73297539 73297810 + 0.833333 NA intron (NM_001005745, intron 5 of 10) intron (NM_001005745, intron 5 of 10) -51673 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 214-11 chr12 51115748 51116095 + 0.833333 NA intron (NM_005653, intron 4 of 14) L1MB3|LINE|L1 -32325 NR_045072 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 354.667-8 chr3 69781614 69782149 + 0.833333 NA intron (NM_006722, intron 1 of 9) intron (NM_006722, intron 1 of 9) 18070 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 210.167-28 chr6 27662571 27662998 + 0.833333 NA Intergenic MER92-int|LTR|ERV1 -31251 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 196.5-32 chr4 38576416 38576686 + 0.833333 NA Intergenic LTR79|LTR|ERVL 12548 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 267.667-9 chr17 30365336 30365757 + 0.833333 NA Intergenic Intergenic -13381 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 218.5-22 chr19 58155170 58155709 + 0.833333 NA Intergenic CpG -4650 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 182.667-33 chr3 112644969 112645284 + 0.833333 NA Intergenic PRIMA41-int|LTR|ERV1 -3983 NM_199511 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 183.5-34 chr4 76350438 76350853 + 0.833333 NA intron (NM_001042784, intron 17 of 23) intron (NM_001042784, intron 17 of 23) 44619 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 282.333-17 chr8 22581910 22582271 + 0.833333 NA intron (NM_198042, intron 2 of 7) intron (NM_198042, intron 2 of 7) 1615 NM_001368120 64236 Hs.632034 NM_021630 ENSG00000120913 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 protein-coding 163.667-31 chr20 3783787 3784080 + 0.833333 NA TTS (NM_001810) TTS (NM_001810) -2485 NM_015417 25876 Hs.72620 NM_015417 ENSG00000101222 SPEF1 C20orf28|CLAMP|SPEF1A sperm flagellar 1 protein-coding 217.167-2 chr1 29703522 29703966 + 0.833333 NA Intergenic Intergenic 333868 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 233-25 chr5 171189869 171190434 + 0.833333 NA intron (NM_022897, intron 18 of 27) intron (NM_022897, intron 18 of 27) -119097 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 231.333-36 chr8 65175802 65176131 + 0.833333 NA intron (NR_038901, intron 1 of 3) MIR3|SINE|MIR 4374 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 183.333-28 chr15 59599943 59600374 + 0.833333 NA Intergenic LTR29|LTR|ERV1 -11625 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 201.833-8 chr17 15345023 15345416 + 0.833333 NA Intergenic L2c|LINE|L2 -3622 NM_031898 64518 Hs.414648 NM_031898 ENSG00000125409 TEKT3 - tektin 3 protein-coding 302.333-7 chr2 161104043 161104602 + 0.833333 NA Intergenic Intergenic -32633 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 173.5-3 chr1 186404956 186405312 + 0.833333 NA intron (NM_001164246, intron 10 of 12) L4_A_Mam|LINE|RTE-X 4562 NM_022375 10896 Hs.679230 NM_022375 ENSG00000262180 OCLM TISR oculomedin protein-coding 186.667-21 chr11 89524391 89524778 + 0.833333 NA intron (NM_001143837, intron 2 of 20) L1ME1|LINE|L1 -32365 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 271.5-5 chr1 204983366 204983691 + 0.833333 NA intron (NM_001005388, intron 21 of 29) LTR33|LTR|ERVL 39302 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 217.167-25 chr6 105751309 105751829 + 0.833333 NA Intergenic L1MA3|LINE|L1 -334767 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 199.667-39 chr6 44061674 44061961 + 0.833333 NA intron (NR_125864, intron 1 of 4) MIR|SINE|MIR 12835 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 204.5-6 chr10 79939340 79939694 + 0.833333 NA intron (NM_003019, intron 7 of 7) intron (NM_003019, intron 7 of 7) 9588 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 264.167-24 chr9 93453729 93454228 + 0.833333 NA promoter-TSS (NM_198841) promoter-TSS (NM_198841) -377 NR_136229 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 169.167-17 chr2 74392717 74393055 + 0.833333 NA promoter-TSS (NM_001190836) promoter-TSS (NM_001190836) -799 NR_033935 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 244.833-6 chr2 120941984 120942533 + 0.833333 NA intron (NM_005270, intron 3 of 13) MLT1D|LTR|ERVL-MaLR 149977 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 179.667-52 chr8 141169196 141169436 + 0.833333 NA intron (NM_001362798, intron 13 of 21) intron (NM_001362798, intron 13 of 21) 40727 NM_001352891 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 300.167-16 chr9 22682296 22682984 + 0.833333 NA non-coding (NR_038977, exon 3 of 6) non-coding (NR_038977, exon 3 of 6) 36440 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 165 chr1 36032252 36032697 + 0.833333 NA intron (NM_177422, intron 10 of 16) AluJo|SINE|Alu -51620 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 211.167-26 chr8 103742562 103742852 + 0.833333 NA intron (NM_001348496, intron 3 of 23) intron (NM_001348496, intron 3 of 23) -76513 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 210-20 chr2 31136992 31137283 + 0.833333 NA intron (NM_001329096, intron 1 of 16) MER39B|LTR|ERV1 1303 NM_001253826 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 222.667-19 chr16 24543024 24543447 + 0.833333 NA intron (NM_018703, intron 1 of 16) intron (NM_018703, intron 1 of 16) 3648 NM_032626 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 247.833-7 chr12 85655871 85656342 + 0.833333 NA Intergenic AluY|SINE|Alu 180303 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 302.833-11 chr6 113306366 113306963 + 0.833333 NA Intergenic Intergenic 126783 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 204.667-27 chr2 177359681 177359936 + 0.833333 NA intron (NR_026966, intron 1 of 8) intron (NR_026966, intron 1 of 8) 32883 NR_026966 100130691 Hs.707723 NM_182585 ENSG00000213963 LOC100130691 - uncharacterized LOC100130691 ncRNA 178.333-27 chr5 6097928 6098269 + 0.833333 NA Intergenic MSTA|LTR|ERVL-MaLR 239194 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 198.5-7 chr11 59545320 59545755 + 0.833333 NA Intergenic LTR8|LTR|ERV1 30624 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 177.5-12 chr12 25877939 25878328 + 0.833333 NA Intergenic L2c|LINE|L2 -4054 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 287-24 chr3 150183940 150184402 + 0.833333 NA Intergenic Intergenic -54348 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 177.833-28 chr22 44694867 44695289 + 0.833333 NA intron (NM_001198721, intron 2 of 9) AluSx1|SINE|Alu -7120 NM_181334 553158 Hs.102336 NM_181334 ENSG00000248405 PRR5-ARHGAP8 - PRR5-ARHGAP8 readthrough protein-coding 209.333-42 chr8 125383438 125383887 + 0.833333 NA Intergenic Intergenic -46696 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 167-13 chr18 3243822 3244275 + 0.833333 NA Intergenic MER20|DNA|hAT-Charlie -3434 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 203.5-12 chr12 110112289 110112705 + 0.833333 NA Intergenic MLT1H2|LTR|ERVL-MaLR -11860 NM_014055 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19 intraflagellar transport 81 protein-coding 193.333-43 chr3 40673691 40674206 + 0.833333 NA Intergenic L1PA17|LINE|L1 148988 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 184.833-30 chr7 127734767 127735312 + 0.833333 NA intron (NM_014390, intron 10 of 23) intron (NM_014390, intron 10 of 23) 82845 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 207.667-44 chr8 102251047 102251329 + 0.833333 NA intron (NR_125415, intron 2 of 2) intron (NR_125415, intron 2 of 2) 11737 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 164.333-12 chr12 86914929 86915148 + 0.833333 NA Intergenic Intergenic -76038 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 232.833-15 chr16 85341687 85342284 + 0.833333 NA Intergenic Intergenic -35660 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 199.833-18 chr2 49868210 49868594 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger 105801 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 256.333-13 chr21 17071745 17072300 + 0.833333 NA Intergenic Intergenic -366868 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 268.167-2 chr1 186345594 186345935 + 0.833333 NA intron (NM_003292, intron 23 of 50) intron (NM_003292, intron 23 of 50) 29489 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 177.833-12 chr15 38972377 38972805 + 0.833333 NA Intergenic Intergenic 275993 NR_160786 203 chr1 17359605 17359967 + 0.833333 NA intron (NM_012387, intron 15 of 15).2 LTR62|LTR|ERVL -12410 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 229.833-13 chr2 155211981 155212420 + 0.833333 NA Intergenic AluSz6|SINE|Alu 513505 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 176-28 chr4 37265198 37265434 + 0.833333 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 20573 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 215.333-38 chr6 64702335 64702752 + 0.833333 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -598875 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 169.167-26 chr5 31439382 31439648 + 0.833333 NA intron (NM_013235, intron 22 of 34) MER44B|DNA|TcMar-Tigger 92578 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 174.833-21 chr5 178545850 178546082 + 0.833333 NA intron (NM_173465, intron 2 of 28) MIRb|SINE|MIR 44427 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 192.833-33 chr7 88243755 88244293 + 0.833333 NA Intergenic L1MEd|LINE|L1 -17031 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 163.333-58 chr8 37114003 37114390 + 0.833333 NA Intergenic Intergenic 329822 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 227-30 chr8 145045776 145046187 + 0.833333 NA Intergenic Intergenic -6486 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 177.667-33 chr4 42537746 42538007 + 0.833333 NA intron (NM_001105529, intron 19 of 35) L1PB1|LINE|L1 119229 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 224.167-18 chr19 46960543 46960838 + 0.833333 NA intron (NM_004491, intron 3 of 6) L1ME4b|LINE|L1 -59147 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 176.5-15 chr2 36407268 36407501 + 0.833333 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 51606 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 228.667-41 chr5 126244417 126245019 + 0.833333 NA Intergenic Intergenic 40457 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 210.333-31 chr7 82667575 82667890 + 0.833333 NA Intergenic Intergenic -223776 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 185.333-5 chr10 91652569 91652989 + 0.833333 NA Intergenic Intergenic -19708 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 189.5-20 chr18 12527900 12528208 + 0.833333 NA intron (NM_020148, intron 4 of 15) AluY|SINE|Alu 95280 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 238.333-25 chr21 16961507 16961854 + 0.833333 NA Intergenic L1MA1|LINE|L1 371443 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 223.667-34 chr21 30396995 30397389 + 0.833333 NA TTS (NM_181599) TTS (NM_181599) 1161 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 206.333-30 chr6 66422447 66422726 + 0.833333 NA Intergenic Intergenic 634707 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 179.167-18 chr3 2802358 2802744 + 0.833333 NA intron (NM_175607, intron 6 of 24) Tigger17a|DNA|TcMar-Tigger -89664 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 196-8 chr12 118626092 118626519 + 0.833333 NA Intergenic L2c|LINE|L2 135374 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 219.833-7 chr13 21177519 21177861 + 0.833333 NA 3' UTR (NM_024026, exon 2 of 2) 3' UTR (NM_024026, exon 2 of 2) 1032 NM_024026 78988 Hs.458367 NM_024026 ENSG00000173141 MRPL57 MRP63|bMRP63 mitochondrial ribosomal protein L57 protein-coding 397.167 chr11 46119066 46119710 + 0.833333 NA intron (NM_001352028, intron 1 of 18) intron (NM_001352028, intron 1 of 18) 1431 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 258.5-29 chr8 26291248 26291853 + 0.833333 NA promoter-TSS (NM_002717) promoter-TSS (NM_002717) 42 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 209.333-7 chr1 105802521 105803006 + 0.833333 NA Intergenic Intergenic -183828 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 192.333-31 chr2 240071679 240071944 + 0.833333 NA Intergenic Intergenic -25739 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 279.333-2 chr1 152325702 152326294 + 0.833333 NA promoter-TSS (NM_002016) promoter-TSS (NM_002016) -795 NM_002016 2312 Hs.654510 NM_002016 ENSG00000143631 FLG ATOD2 filaggrin protein-coding 283.667-2 chr1 226335639 226336194 + 0.833333 NA Intergenic L1ME2|LINE|L1 -26149 NM_001270410 286826 Hs.120817 NM_173083 ENSG00000183814 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 251.833-14 chr7 79505861 79506326 + 0.833333 NA Intergenic Intergenic 52133 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 208-30 chr3 154573517 154573799 + 0.833333 NA Intergenic L1M1|LINE|L1 -143468 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 202.667-16 chr18 2120713 2121064 + 0.833333 NA Intergenic Intergenic 450617 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 178.167-14 chr20 60249476 60249861 + 0.833333 NA intron (NR_046099, intron 3 of 4) MER5A|DNA|hAT-Charlie -58806 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 291.833-9 chr4 70901493 70902342 + 0.833333 NA promoter-TSS (NM_001244767) promoter-TSS (NM_001244767) -452 NM_173468 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 277.833-8 chr17 74775697 74776090 + 0.833333 NA promoter-TSS (NM_001321264) promoter-TSS (NM_001321264) 452 NM_001305086 26151 Hs.144058 NM_015654 ENSG00000109065 NAT9 EBSP, hNATL N-acetyltransferase 9 (putative) protein-coding 188-6 chr10 61512749 61512982 + 0.833333 NA Intergenic L1M5|LINE|L1 32824 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 167.833-21 chr18 11189653 11189862 + 0.833333 NA Intergenic Intergenic -40995 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 168.833-3 chr1 64471433 64471637 + 0.833333 NA intron (NM_020925, intron 1 of 26) intron (NM_020925, intron 1 of 26) 1406 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 210.833-16 chr2 65658556 65659043 + 0.833333 NA Intergenic Intergenic -226200 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 191.833-25 chr8 101642477 101642972 + 0.833333 NA intron (NM_024915, intron 12 of 15) intron (NM_024915, intron 12 of 15) 148245 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 170.167-7 chr10 67667819 67668155 + 0.833333 NA intron (NM_013266, intron 1 of 17) intron (NM_013266, intron 1 of 17) -2302 NM_001127384 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 212.333-37 chrX 84731694 84732171 + 0.833333 NA Intergenic L1M4b|LINE|L1 -202219 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 170.5-14 chr15 69978077 69978383 + 0.833333 NA Intergenic L1ME3G|LINE|L1 101238 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 293.667-11 chr2 42117047 42117637 + 0.833333 NA Intergenic Intergenic -52011 NM_019063 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 237.333-12 chr13 84139448 84139786 + 0.833333 NA promoter-TSS (NR_046871) promoter-TSS (NR_046871) -985 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 257.667-11 chr2 159043294 159043737 + 0.833333 NA intron (NM_001350065, intron 3 of 27) intron (NM_001350065, intron 3 of 27) 74875 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 183.167-36 chr7 44869134 44869533 + 0.833333 NA Intergenic AluSg|SINE|Alu 12467 NR_039801 100616393 NR_039801 ENSG00000284261 MIR4657 mir-4657 microRNA 4657 ncRNA 205.167-6 chr17 72316890 72317186 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie -25773 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 177.5-42 chr5 66864555 66864935 + 0.833333 NA intron (NM_015183, intron 1 of 27) MLT1C|LTR|ERVL-MaLR 35972 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 185.667-18 chr12 113422350 113422711 + 0.833333 NA intron (NM_001304993, intron 1 of 7) intron (NM_001304993, intron 1 of 7) 140 NM_138432 113675 Hs.337594 NM_138432 ENSG00000139410 SDSL SDH 2|SDS-RS1|TDH|cSDH serine dehydratase like protein-coding 189-15 chr12 47080113 47080607 + 0.833333 NA promoter-TSS (NM_181847) promoter-TSS (NM_181847) -401 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 174.167-38 chr6 155269795 155270159 + 0.833333 NA intron (NM_001001346, intron 1 of 1) L2a|LINE|L2 5964 NM_001001346 49861 Hs.567491 NM_001001346 ENSG00000171217 CLDN20 - claudin 20 protein-coding 186.333-30 chr3 105627378 105627781 + 0.833333 NA Intergenic ERVL-B4-int|LTR|ERVL 240012 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 345.833-2 chr11 66363553 66364264 + 0.833333 NA TTS (NR_135761) TTS (NR_135761) 7852 NM_001532 3177 Hs.569017 NM_001532 ENSG00000174669 SLC29A2 DER12|ENT2|HNP36 solute carrier family 29 member 2 protein-coding 216.167-5 chr10 16988538 16988985 + 0.833333 NA intron (NM_001081, intron 29 of 66) intron (NM_001081, intron 29 of 66) 141056 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 188-32 chr22 17939912 17940355 + 0.833333 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) -33247 NM_001122731 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 208.167-7 chr10 90620161 90620637 + 0.833333 NA Intergenic Intergenic -79594 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 165.167-38 chr5 164159914 164160161 + 0.833333 NA Intergenic Intergenic 307365 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 171.167-19 chr2 75396542 75396922 + 0.833333 NA Intergenic MLT2A2|LTR|ERVL -127336 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 203.833-4 chr10 59168288 59168632 + 0.833333 NA Intergenic L2|LINE|L2 8004 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 196-11 chr14 56468249 56468517 + 0.833333 NA Intergenic L1M2|LINE|L1 -45948 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 204.667-25 chr2 102709210 102709658 + 0.833333 NA 3' UTR (NM_003048, exon 12 of 12) 3' UTR (NM_003048, exon 12 of 12) 27454 NR_136173 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 176.167-45 chr8 75467819 75468171 + 0.833333 NA intron (NM_001330561, intron 1 of 11) (TATA)n|Simple_repeat|Simple_repeat 60346 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 208.833-21 chr4 30305767 30306063 + 0.833333 NA Intergenic L2c|LINE|L2 -414454 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 170.167-10 chr12 38761332 38761620 + 0.833333 NA intron (NM_153634, intron 9 of 19) intron (NM_153634, intron 9 of 19) 144115 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 170.333-50 chr6 111426871 111427110 + 0.833333 NA intron (NM_002912, intron 2 of 32) intron (NM_002912, intron 2 of 32) -56482 NR_034110 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA 175-56 chr8 134712095 134712395 + 0.833333 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 786 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 276-26 chr7 100612050 100612465 + 0.833333 NA promoter-TSS (NM_001040099) promoter-TSS (NM_001040099) 95 NM_001040097 64598 Hs.521086 NM_023948 ENSG00000106330 MOSPD3 CDS3|NET30 motile sperm domain containing 3 protein-coding 168.5-35 chr4 58840715 58841037 + 0.833333 NA Intergenic THE1A|LTR|ERVL-MaLR -143406 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 263.5-11 chr17 46983333 46983871 + 0.833333 NA Intergenic Intergenic -4349 NM_203400 388394 Hs.367999 NM_203400 ENSG00000179673 RPRML - reprimo like protein-coding 164-26 chr18 46155640 46155931 + 0.833333 NA Intergenic Intergenic -18237 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 279.667-22 chr6 34730658 34731176 + 0.833333 NA Intergenic MIRb|SINE|MIR -26177 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 188-16 chr15 71855337 71855614 + 0.833333 NA intron (NM_006901, intron 34 of 41) intron (NM_006901, intron 34 of 41) 44921 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 253.5-22 chr3 125129934 125130446 + 0.833333 NA intron (NM_001195483, intron 5 of 12) intron (NM_001195483, intron 5 of 12) 21362 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 205.333-9 chr12 10501779 10502190 + 0.833333 NA Intergenic L1PREC2|LINE|L1 -3909 NM_001357734 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 339.167-2 chr1 105582448 105583279 + 0.833333 NA Intergenic L1PA16|LINE|L1 36072 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 196.333 chr1 32872590 32872840 + 0.833333 NA promoter-TSS (NM_001171941) promoter-TSS (NM_001171941) -231 NM_001171941 252995 Hs.524234 NM_153756 ENSG00000160097 FNDC5 FRCP2|irisin fibronectin type III domain containing 5 protein-coding 211.5-47 chr8 83598702 83599038 + 0.833333 NA Intergenic Intergenic 195112 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 224.833-3 chr10 6202544 6202902 + 0.833333 NA promoter-TSS (NM_001323017) promoter-TSS (NM_001323017) -209 NM_001363545 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 164.167-39 chr5 50903519 50903877 + 0.833333 NA Intergenic Intergenic 66489 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 242.5-5 chr1 245065836 245066206 + 0.833333 NA intron (NM_032328, intron 4 of 7) HAL1|LINE|L1 -88964 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 177.667-11 chr14 50125337 50125974 + 0.833333 NA intron (NM_006939, intron 21 of 22) HAL1|LINE|L1 -9083 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 171.5-28 chr2 204759561 204759945 + 0.833333 NA intron (NM_205863, intron 2 of 21) L1ME4b|LINE|L1 214278 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 227.667-34 chr4 117646520 117646861 + 0.833333 NA intron (NR_125757, intron 2 of 3) L1PA16|LINE|L1 -187711 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 187.167-14 chr16 6797869 6798287 + 0.833333 NA intron (NM_001142334, intron 1 of 13) MIR|SINE|MIR 24269 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 183.833-22 chr8 122132008 122132444 + 0.833333 NA Intergenic Intergenic 436418 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 176.5-31 chr5 72785627 72786022 + 0.833333 NA Intergenic Intergenic -30767 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 186-27 chr21 26877862 26878188 + 0.833333 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat -32616 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 270.667-22 chr7 77356245 77356857 + 0.833333 NA intron (NR_146937, intron 14 of 31) intron (NR_146937, intron 14 of 31) -58647 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 163.667-21 chr17 7931999 7932240 + 0.833333 NA promoter-TSS (NM_001037144) promoter-TSS (NM_001037144) 38 NM_001353207 116840 Hs.348012 NM_053051 ENSG00000170037 CNTROB LIP8|PP1221 centrobin, centriole duplication and spindle assembly protein protein-coding 231-16 chr2 20152032 20152529 + 0.833333 NA Intergenic L1MB4|LINE|L1 72850 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 188.5-3 chr1 43460179 43460645 + 0.833333 NA Intergenic L1PB1|LINE|L1 -6423 NM_001190880 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 208-25 chr2 77943869 77944198 + 0.833333 NA intron (NR_110288, intron 1 of 3) MLT1D-int|LTR|ERVL-MaLR 10993 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 193.833-30 chr8 99380496 99380982 + 0.833333 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 155991 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 203.833-19 chr5 40254082 40254680 + 0.833333 NA Intergenic L2a|LINE|L2 202090 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 273.5-23 chr9 91957283 91957679 + 0.833333 NA Intergenic AluSx|SINE|Alu -7253 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 197.333-24 chr22 45829860 45830146 + 0.833333 NA intron (NM_013236, intron 10 of 11) L1MB3|LINE|L1 69479 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 312.833-9 chrX 77545581 77546133 + 0.833333 NA intron (NM_000489, intron 30 of 34) MIR|SINE|MIR 98468 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 184-48 chr7 44539610 44539962 + 0.833333 NA exon (NM_001101648, exon 2 of 19) exon (NM_001101648, exon 2 of 19) 1544 NM_013389 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 175.167-4 chr10 66755332 66755678 + 0.833333 NA intron (NM_001127384, intron 9 of 17) L1MB8|LINE|L1 -170531 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 170.167-27 chr20 60263233 60263570 + 0.833333 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -45073 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 175.667-32 chr20 64281618 64281979 + 0.833333 NA Intergenic L1MB5|LINE|L1 -8587 NR_040415 140849 Hs.745565 NR_040415 LINC00266-1 C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3 long intergenic non-protein coding RNA 266-1 ncRNA 226.833-9 chr16 82038539 82038939 + 0.833333 NA intron (NM_002153, intron 1 of 4) LTR16A2|LTR|ERVL 3486 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 167-27 chr3 136105925 136106155 + 0.833333 NA intron (NM_181897, intron 11 of 12) intron (NM_181897, intron 11 of 12) 83298 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 233.5-23 chr21 46484755 46485163 + 0.833333 NA intron (NM_001146115, intron 2 of 19) SVA_A|Retroposon|SVA 22488 NR_046400 100862692 Hs.737163 NR_046400 ENSG00000223692 DIP2A-IT1 - DIP2A intronic transcript 1 ncRNA 199.833-14 chr15 67948623 67949175 + 0.833333 NA Intergenic AluSx1|SINE|Alu -105280 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 186.667-13 chr10 60172511 60172878 + 0.833333 NA intron (NM_001204403, intron 21 of 43) intron (NM_001204403, intron 21 of 43) -31678 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 205.167-7 chr18 62235274 62235568 + 0.833333 NA non-coding (NR_144408, exon 12 of 33) non-coding (NR_144408, exon 12 of 33) 48166 NR_144403 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 203.833-21 chr6 24914574 24914894 + 0.833333 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -3686 NM_014722 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 272-25 chr4 47121567 47121932 + 0.833333 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 90182 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 258.5-25 chr5 30050715 30051274 + 0.833333 NA Intergenic Intergenic 170434 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 187-21 chr2 170041295 170041871 + 0.833333 NA intron (NM_172070, intron 32 of 38) intron (NM_172070, intron 32 of 38) -136564 NM_001083615 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 186-44 chr8 127911305 127911700 + 0.833333 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 37221 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 257.5-16 chr2 7940543 7941062 + 0.833333 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) 36012 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 183.167 chr1 26145969 26146262 + 0.833333 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -12964 NM_024869 79927 Hs.694119 NM_024869 ENSG00000197245 FAM110D GRRP1 family with sequence similarity 110 member D protein-coding 215.833-25 chr8 61129781 61130320 + 0.833333 NA Intergenic AluSz|SINE|Alu -157920 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 360.334-6 chr4 109702497 109703154 + 0.833333 NA intron (NM_001226, intron 1 of 6) CpG 620 NM_001226 839 Hs.654616 NM_001226 ENSG00000138794 CASP6 MCH2 caspase 6 protein-coding 190.833-12 chr17 34081066 34081414 + 0.833333 NA intron (NM_001094, intron 1 of 9) MER5A|DNA|hAT-Charlie 75566 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 355.667-2 chr17 75033037 75033579 + 0.833333 NA intron (NR_110835, intron 1 of 7) intron (NR_110835, intron 1 of 7) 741 NR_110835 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 191.833-20 chr4 117631568 117631829 + 0.833333 NA intron (NR_125757, intron 2 of 3) L1MA8|LINE|L1 -202703 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 209.667-10 chr12 28844861 28845250 + 0.833333 NA Intergenic L1M4|LINE|L1 -304223 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 231.5-13 chr15 74307772 74308240 + 0.833333 NA intron (NM_025055, intron 11 of 18) intron (NM_025055, intron 11 of 18) -10553 NM_001287181 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 171.833-11 chr18 77844417 77844768 + 0.833333 NA Intergenic L1MB7|LINE|L1 149135 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 178-17 chr19 49301047 49301472 + 0.833333 NA intron (NM_014037, intron 7 of 11) L1M3c|LINE|L1 7609 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 256.333-15 chr3 49017468 49017991 + 0.833333 NA exon (NM_001009996, exon 3 of 12) exon (NM_001009996, exon 3 of 12) 851 NM_001009996 55152 Hs.654815 NM_018114 ENSG00000178149 DALRD3 - DALR anticodon binding domain containing 3 protein-coding 177-9 chr12 7374094 7374307 + 0.833333 NA intron (NM_001297650, intron 13 of 19) intron (NM_001297650, intron 13 of 19) 69868 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 212.667-9 chr14 61744023 61744371 + 0.833333 NA intron (NM_181054, intron 12 of 13) intron (NM_181054, intron 12 of 13) 4892 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 190-47 chr7 12726415 12726792 + 0.833333 NA Intergenic MIRc|SINE|MIR 38970 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 179-21 chr2 101973389 101973658 + 0.833333 NA Intergenic MER89|LTR|ERV1 -9942 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 216.5-20 chr17 19439957 19440375 + 0.833333 NA Intergenic L1MEc|LINE|L1 28934 NM_007148 7732 Hs.189482 NM_007148 ENSG00000128482 RNF112 BFP|ZNF179 ring finger protein 112 protein-coding 222.833-12 chr17 7058678 7059004 + 0.833333 NA Intergenic Intergenic -14749 NM_001370549 162515 Hs.336564 NM_153357 ENSG00000174326 SLC16A11 MCT 11|MCT11 solute carrier family 16 member 11 protein-coding 224-3 chr1 155645988 155646416 + 0.833333 NA Intergenic LTR25|LTR|ERV1 33053 NR_132762 106633810 NR_132762 SCARNA26A - small Cajal body-specific RNA 26A ncRNA 173-12 chr12 79969650 79969961 + 0.833333 NA Intergenic Intergenic -34350 NM_001244990 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 189.5-43 chr8 130525242 130525500 + 0.833333 NA Intergenic Intergenic -81697 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 204.333-17 chr17 49787142 49787519 + 0.833333 NA Intergenic Intergenic -1351 NM_001346706 11143 Hs.21907 NM_007067 ENSG00000136504 KAT7 HBO1|HBOA|MYST2|ZC2HC7 lysine acetyltransferase 7 protein-coding 215.167-12 chr17 7757989 7758543 + 0.833333 NA intron (NM_020877, intron 13 of 85) MADE1|DNA|TcMar-Mariner 3946 NR_002778 118432 Hs.658086 NR_002778 ENSG00000240480 RPL29P2 RPL29_10_1510 ribosomal protein L29 pseudogene 2 pseudo 184.833-33 chr9 132939217 132939543 + 0.833333 NA intron (NM_000368, intron 1 of 22) intron (NM_000368, intron 1 of 22) 5236 NM_001162426 7248 Hs.370854 NM_000368 ENSG00000165699 TSC1 LAM|TSC TSC complex subunit 1 protein-coding 211.833-11 chr2 83172091 83172377 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 315431 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 167.833-12 chr13 110235492 110235753 + 0.833333 NA intron (NM_001845, intron 2 of 51) AluY|SINE|Alu 71535 NM_001845 1282 Hs.17441 NM_001845 ENSG00000187498 COL4A1 BSVD|BSVD1|RATOR collagen type IV alpha 1 chain protein-coding 201.167-27 chr8 14192077 14192615 + 0.833333 NA intron (NM_139167, intron 4 of 7) intron (NM_139167, intron 4 of 7) 562656 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 164-22 chr17 43322213 43322443 + 0.833333 NA Intergenic AluSc8|SINE|Alu -22097 NR_002716 6066 NR_002716 ENSG00000274585 RNU2-1 RNU2|U2 RNA, U2 small nuclear 1 snRNA 178.833-32 chr5 93564238 93564452 + 0.833333 NA intron (NR_021490, intron 1 of 5) intron (NR_021490, intron 1 of 5) 6998 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 201.167-29 chr8 106034681 106035200 + 0.833333 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 25563 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 190.5-48 chr7 26654105 26654361 + 0.833333 NA Intergenic Intergenic 16362 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 222.833-6 chr12 44219296 44219873 + 0.833333 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 383503 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 169-34 chr2 205782368 205782689 + 0.833333 NA intron (NM_201266, intron 15 of 16) L1ME3G|LINE|L1 100027 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 366.834 chr1 8429803 8430391 + 0.833333 NA intron (NR_125999, intron 3 of 3) intron (NR_125999, intron 3 of 3) 5452 NR_125999 102724552 Hs.568612 NR_125999 RERE-AS1 - RERE antisense RNA 1 ncRNA 251.667-7 chr10 34138167 34138795 + 0.833333 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -365801 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 216.833-19 chr4 7804167 7804526 + 0.833333 NA intron (NM_198595, intron 9 of 16) intron (NM_198595, intron 9 of 16) 50256 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 271.833-13 chr7 8296680 8297370 + 0.833333 NA intron (NR_125740, intron 3 of 5) intron (NR_125740, intron 3 of 5) -34413 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 270.667-24 chr8 18495066 18495390 + 0.833333 NA Intergenic Intergenic 103946 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 225-32 chr6 39916802 39917103 + 0.833333 NA intron (NR_033233, intron 2 of 8) intron (NR_033233, intron 2 of 8) 10764 NM_005943 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 167.833-11 chr12 56521594 56521876 + 0.833333 NA promoter-TSS (NM_002898) promoter-TSS (NM_002898) -85 NM_002898 5939 Hs.505729 NM_002898 ENSG00000076067 RBMS2 SCR3 RNA binding motif single stranded interacting protein 2 protein-coding 180-36 chr2 72978802 72979295 + 0.833333 NA intron (NM_001330411, intron 11 of 14) L1ME3Cz|LINE|L1 61529 NM_004097 2016 Hs.516090 NM_004097 ENSG00000135638 EMX1 - empty spiracles homeobox 1 protein-coding 292.167-17 chr5 172769452 172770220 + 0.833333 NA intron (NM_004417, intron 2 of 3) intron (NM_004417, intron 2 of 3) 1359 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 201.167-17 chr2 58323193 58323632 + 0.833333 NA Intergenic Intergenic 47535 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 176.667-52 chr7 1401184 1401547 + 0.833333 NA Intergenic AluSc|SINE|Alu 58105 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 166.167-37 chr8 81304539 81304872 + 0.833333 NA Intergenic MER103C|DNA|hAT-Charlie 24169 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 269.667-15 chr2 134894993 134895502 + 0.833333 NA intron (NR_036549, intron 1 of 4) AluSc8|SINE|Alu 23359 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 205.333-21 chr2 105202695 105203036 + 0.833333 NA Intergenic MER97a|DNA|hAT-Tip100 -38878 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 292.167-8 chr18 46212234 46212664 + 0.833333 NA intron (NM_001008239, intron 1 of 3) L1ME4b|LINE|L1 38415 NM_145055 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 234.833 chr1 15886549 15886895 + 0.833333 NA intron (NM_015001, intron 3 of 14) intron (NM_015001, intron 3 of 14) -38575 NR_024279 729614 Hs.119298 NR_024279 ENSG00000179743 FLJ37453 - uncharacterized LOC729614 ncRNA 260.5-26 chr9 36007930 36008312 + 0.833333 NA Intergenic Tigger2|DNA|TcMar-Tigger -28792 NM_001316348 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 413.333-3 chr14 24114327 24115092 + 0.833333 NA promoter-TSS (NR_028099) promoter-TSS (NR_028099) 12 NM_001163484 80344 Hs.525251 NM_025230 ENSG00000100897 DCAF11 GL014|PRO2389|WDR23 DDB1 and CUL4 associated factor 11 protein-coding 300.667-10 chr20 5287107 5287489 + 0.833333 NA Intergenic L1PB1|LINE|L1 29434 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 306.667-2 chr12 9888731 9889265 + 0.833333 NA intron (NM_001190765, intron 3 of 5) intron (NM_001190765, intron 3 of 5) 7509 NM_001190765 100431172 Hs.725113 NM_001190765 ENSG00000256797 KLRF2 NKp65 killer cell lectin like receptor F2 protein-coding 169.167-22 chr3 67467018 67467436 + 0.833333 NA intron (NM_001177599, intron 9 of 10) intron (NM_001177599, intron 9 of 10) 187387 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 187.667-5 chr10 98100226 98100641 + 0.833333 NA Intergenic L1ME4c|LINE|L1 -34191 NM_001256620 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 314.833-8 chr3 8830806 8831289 + 0.833333 NA Intergenic AluJr|SINE|Alu -61433 NM_000916 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 293.5-14 chr2 195905392 195905744 + 0.833333 NA intron (NM_018897, intron 27 of 64) intron (NM_018897, intron 27 of 64) 163269 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 240.333-25 chr8 129846097 129846608 + 0.833333 NA intron (NM_001353307, intron 13 of 13) intron (NM_001353307, intron 13 of 13) -59728 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 468-5 chr20 51585876 51586901 + 0.833333 NA Intergenic Intergenic -23549 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 198.833-22 chr4 39321479 39321926 + 0.833333 NA intron (NM_001363495, intron 6 of 23) A-rich|Low_complexity|Low_complexity 44660 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 233-14 chr2 187450496 187450870 + 0.833333 NA Intergenic Intergenic -2431 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 202.333-35 chr8 37703407 37703806 + 0.833333 NA Intergenic Intergenic 7824 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 297.667-24 chr8 140317139 140317769 + 0.833333 NA intron (NM_001160372, intron 9 of 22) L1MC5|LINE|L1 140290 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 165.333-47 chr8 66621665 66622064 + 0.833333 NA Intergenic MLT1D|LTR|ERVL-MaLR -8646 NM_001294282 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 221-20 chr2 206027762 206028263 + 0.833333 NA intron (NM_017759, intron 6 of 10) intron (NM_017759, intron 6 of 10) 58162 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 163.167-32 chr4 53863991 53864297 + 0.833333 NA Intergenic Intergenic 123138 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 229.333-13 chr13 39567577 39568107 + 0.833333 NA intron (NM_005780, intron 2 of 3) MER58A|DNA|hAT-Charlie 35351 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 175.667-36 chr22 50560018 50560416 + 0.833333 NA intron (NM_001123225, intron 1 of 2) intron (NM_001123225, intron 1 of 2) 2702 NM_001123225 644186 Hs.535660 NM_001123225 ENSG00000217442 SYCE3 C22orf41|THEG2 synaptonemal complex central element protein 3 protein-coding 165.667-46 chr6 35390911 35391153 + 0.833333 NA intron (NM_001171819, intron 2 of 6) AluJo|SINE|Alu 48474 NM_006238 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 262.167-2 chr10 114779962 114780334 + 0.833333 NA TTS (NR_120628) TTS (NR_120628) -11844 NM_001322884 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 188.833-36 chr8 52013356 52013629 + 0.833333 NA Intergenic AluSz6|SINE|Alu -114306 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 228-12 chr12 48391980 48392445 + 0.833333 NA Intergenic L1PA10|LINE|L1 -40966 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 177-7 chr11 65026321 65026692 + 0.833333 NA promoter-TSS (NM_147777) promoter-TSS (NM_147777) -933 NM_147777 29907 Hs.80132 NM_013306 ENSG00000110025 SNX15 HSAF001435 sorting nexin 15 protein-coding 213.5-3 chr10 20625382 20625774 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 73608 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 215-5 chr10 73554925 73555422 + 0.833333 NA intron (NR_146997, intron 4 of 21) L1MC5|LINE|L1 -1833 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 175.5-41 chr5 41593800 41594109 + 0.833333 NA Intergenic Intergenic -83353 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 190.5-7 chr12 14216260 14216614 + 0.833333 NA Intergenic Intergenic -149195 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 166.833-14 chr2 74471025 74471426 + 0.833333 NA TTS (NM_053050) TTS (NM_053050) 1455 NM_053050 116540 Hs.534527 NM_053050 ENSG00000204822 MRPL53 L53MT mitochondrial ribosomal protein L53 protein-coding 197 chr1 3453745 3454339 + 0.833333 NA promoter-TSS (NM_014448) promoter-TSS (NM_014448) -623 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 195.5-25 chr4 26157867 26158335 + 0.833333 NA Intergenic Intergenic -161609 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 178-22 chr2 192149084 192149392 + 0.833333 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 45695 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 184.833-4 chr10 4600098 4600417 + 0.833333 NA Intergenic Intergenic -55899 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 306.333-11 chrX 55160736 55161243 + 0.833333 NA 5' UTR (NM_001166703, exon 1 of 3) 5' UTR (NM_001166703, exon 1 of 3) 113 NM_001166703 90736 Hs.415414 NM_138362 ENSG00000182518 FAM104B CXorf44 family with sequence similarity 104 member B protein-coding 182.667-16 chr14 71209607 71209873 + 0.833333 NA Intergenic MER2|DNA|TcMar-Tigger -110736 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 196.167-31 chr4 85949319 85949623 + 0.833333 NA intron (NM_031305, intron 2 of 6) MLT1H|LTR|ERVL-MaLR 19455 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 196-43 chr8 73642001 73642352 + 0.833333 NA intron (NM_001164383, intron 1 of 9) L2|LINE|L2 104664 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 187.333-2 chr1 85849775 85850126 + 0.833333 NA intron (NM_152890, intron 37 of 59) intron (NM_152890, intron 37 of 59) -141517 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 226-3 chr1 81729654 81730052 + 0.833333 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 30083 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 231.167-27 chr5 10255974 10256275 + 0.833333 NA exon (NM_001306153, exon 4 of 11) exon (NM_001306153, exon 4 of 11) 5587 NM_001306155 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 174-8 chr11 28435452 28435767 + 0.833333 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 41939 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 185.833-11 chr17 19941050 19941343 + 0.833333 NA intron (NM_007202, intron 6 of 14) intron (NM_007202, intron 6 of 14) 36632 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 170.167-39 chr8 17065692 17066005 + 0.833333 NA intron (NR_146233, intron 2 of 15) L2|LINE|L2 38610 NM_181723 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 272.833-7 chr16 9138821 9139436 + 0.833333 NA Intergenic Intergenic 47484 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 175.667-57 chrX 69219605 69219837 + 0.833333 NA Intergenic Intergenic 40164 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 290.167-19 chr8 101758356 101759176 + 0.833333 NA intron (NM_001040625, intron 4 of 6) L2b|LINE|L2 32203 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 284-17 chr2 129845831 129846586 + 0.833333 NA Intergenic THE1B|LTR|ERVL-MaLR 31283 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 278-30 chr8 138052774 138053242 + 0.833333 NA intron (NR_161374, intron 1 of 7) L1PA4|LINE|L1 30537 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 286.5-2 chr10 33555357 33555758 + 0.833333 NA Intergenic AluJr|SINE|Alu 217123 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 247.5-44 chr7 107046858 107047277 + 0.833333 NA intron (NM_002736, intron 1 of 10) intron (NM_002736, intron 1 of 10) 2362 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 220.833-30 chr9 87193952 87194332 + 0.833333 NA Intergenic Intergenic 45498 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 200.833-24 chr5 61393810 61394288 + 0.833333 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 61791 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 193.167-29 chr6 137415412 137415985 + 0.833333 NA Intergenic Intergenic 78696 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 174.833-22 chr7 5128763 5129049 + 0.833333 NA intron (NR_034163, intron 3 of 5) (TA)n|Simple_repeat|Simple_repeat 15640 NR_034163 645700 Hs.690815 NR_034163 ENSG00000159904 ZNF890P - zinc finger protein 890, pseudogene pseudo 208-3 chr1 185766262 185766573 + 0.833333 NA intron (NM_031935, intron 1 of 106) L1MEd|LINE|L1 32026 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 165.833-19 chr18 8491136 8491346 + 0.833333 NA Intergenic Intergenic -118204 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 166.5-24 chr2 196286732 196287028 + 0.833333 NA intron (NM_020760, intron 14 of 28) intron (NM_020760, intron 14 of 28) 26856 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 252.667-5 chr1 214318117 214318674 + 0.833333 NA intron (NM_020197, intron 4 of 11) intron (NM_020197, intron 4 of 11) 37236 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 274.167-4 chr1 183636026 183636448 + 0.833333 NA promoter-TSS (NM_001270439) promoter-TSS (NM_001270439) 128 NM_001297670 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 223-13 chr17 66605621 66605960 + 0.833333 NA intron (NM_002737, intron 3 of 16) L1MB8|LINE|L1 -181282 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 169.833-13 chr14 31420418 31420652 + 0.833333 NA promoter-TSS (NR_110045) promoter-TSS (NR_110045) 15 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 163.667-16 chr14 61562701 61562998 + 0.833333 NA non-coding (NR_110416, exon 4 of 5) non-coding (NR_110416, exon 4 of 5) 7345 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 279.167-15 chrX 99476136 99476592 + 0.833333 NA Intergenic Intergenic 933909 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 187.167-16 chr19 33584859 33585329 + 0.833333 NA Intergenic AluY|SINE|Alu -36859 NM_001127896 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 181.833-16 chr22 45480587 45480877 + 0.833333 NA Intergenic Intergenic -22151 NM_006486 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 247.166-2 chr3 194003751 194004330 + 0.833333 NA promoter-TSS (NR_033944) promoter-TSS (NR_033944) -381 NR_033944 647323 Hs.652830 NR_033944 ENSG00000214146 LINC02026 - long intergenic non-protein coding RNA 2026 ncRNA 184.167-8 chr11 43853723 43853955 + 0.833333 NA intron (NM_016142, intron 9 of 10) intron (NM_016142, intron 9 of 10) -26992 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 212.334-2 chr10 103244923 103245556 + 0.833333 NA promoter-TSS (NM_001143909) promoter-TSS (NM_001143909) -648 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 234-31 chr6 41723676 41724083 + 0.833333 NA intron (NM_001167827, intron 1 of 8) intron (NM_001167827, intron 1 of 8) 9731 NR_162107 113218489 NR_162107 MIR10398 - microRNA 10398 ncRNA 186.5-27 chr6 7275378 7275687 + 0.833333 NA Intergenic AluJr4|SINE|Alu 37667 NR_120448 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 216.5-29 chr20 37096012 37096390 + 0.833333 NA promoter-TSS (NM_183404) promoter-TSS (NM_183404) -204 NM_001323281 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 245.333-12 chr15 72722811 72723148 + 0.833333 NA intron (NM_033028, intron 7 of 15) intron (NM_033028, intron 7 of 15) 36772 NM_033028 585 Hs.208681 NM_033028 ENSG00000140463 BBS4 - Bardet-Biedl syndrome 4 protein-coding 169.667-42 chr3 146238655 146239040 + 0.833333 NA intron (NM_001128304, intron 2 of 10) L1MB8|LINE|L1 11768 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 187.667-12 chr12 50169268 50169512 + 0.833333 NA Intergenic MER57B1|LTR|ERV1 -1857 NM_001281731 91012 Hs.270525 NM_147190 ENSG00000139624 CERS5 LASS5|Trh4 ceramide synthase 5 protein-coding 182.833-36 chr8 75196503 75196875 + 0.833333 NA Intergenic Intergenic 81792 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 197.667-22 chr15 50975241 50975615 + 0.833333 NA intron (NM_001252127, intron 15 of 20) L1MB1|LINE|L1 31299 NR_027642 100132724 Hs.730493 NR_027642 DCAF13P3 - DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo 210.833-26 chr7 88676338 88676754 + 0.833333 NA Intergenic L1PB1|LINE|L1 -83154 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 284.167-4 chr10 113187082 113187488 + 0.833333 NA Intergenic Intergenic 58014 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 224-44 chr8 40977684 40978108 + 0.833333 NA Intergenic Intergenic -80070 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 210.667-24 chr19 28125773 28126448 + 0.833333 NA Intergenic Intergenic -332170 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 246.5-18 chr17 52297410 52298141 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR -92747 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 199.333-6 chr1 111538666 111539127 + 0.833333 NA intron (NM_001081976, intron 1 of 5) intron (NM_001081976, intron 1 of 5) -3113 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 171.667-60 chr8 117157463 117157688 + 0.833333 NA intron (NM_173851, intron 3 of 7) intron (NM_173851, intron 3 of 7) 22580 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 244.333-11 chr15 98611069 98611521 + 0.833333 NA Intergenic Intergenic -37244 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 201.333-3 chr1 51879230 51879579 + 0.833333 NA promoter-TSS (NM_002525) promoter-TSS (NM_002525) -467 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 174.167-42 chr8 92698228 92698613 + 0.833333 NA Intergenic MIR|SINE|MIR -42926 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 194.5-24 chr16 26965220 26965538 + 0.833333 NA Intergenic AluJr|SINE|Alu -101548 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 278.667-14 chr17 61943256 61943903 + 0.833333 NA 3' UTR (NM_005121, exon 30 of 30) 3' UTR (NM_005121, exon 30 of 30) -15597 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 198-35 chr6 53333191 53333782 + 0.833333 NA TTS (NR_046241) TTS (NR_046241) 4131 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 213.333-31 chr5 77775846 77776463 + 0.833333 NA intron (NM_004607, intron 1 of 3) CpG 185 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 211.167-24 chr8 71335330 71335634 + 0.833333 NA intron (NM_001370336, intron 4 of 17) intron (NM_001370336, intron 4 of 17) 21224 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 198.5-8 chr12 11712414 11712747 + 0.833333 NA intron (NM_001987, intron 1 of 7) MLT2D|LTR|ERVL 62726 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 185.167-17 chr2 110677820 110678096 + 0.833333 NA intron (NM_001278617, intron 1 of 23) CpG 105 NM_004336 699 Hs.469649 NM_004336 ENSG00000169679 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 171.667-64 chrX 131841823 131842136 + 0.833333 NA Intergenic MIR|SINE|MIR -11336 NR_026975 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 226.333-7 chr15 83000235 83000880 + 0.833333 NA 3' UTR (NM_144597, exon 4 of 4) 3' UTR (NM_144597, exon 4 of 4) 11082 NM_001160115 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 169.833-32 chr4 49108240 49108624 + 0.833333 NA Intergenic (CATTC)n|Satellite|Satellite 121790 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 240.333-22 chr7 38982361 38982815 + 0.833333 NA intron (NR_138047, intron 6 of 6) intron (NR_138047, intron 6 of 6) 4679 NM_007252 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 237.333-29 chr4 129105618 129106016 + 0.833333 NA intron (NM_001099783, intron 2 of 5) intron (NM_001099783, intron 2 of 5) 9665 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 240.833-5 chr15 25752520 25752925 + 0.833333 NA intron (NM_024490, intron 2 of 20) L1M3|LINE|L1 96103 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 193.833-7 chr14 68272182 68272634 + 0.833333 NA intron (NM_133509, intron 7 of 10) MIR|SINE|MIR 356379 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 170.833-20 chr2 190171607 190171848 + 0.833333 NA intron (NM_001042521, intron 2 of 2) intron (NM_001042521, intron 2 of 2) -9136 NM_001042519 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 234.5-3 chr1 108832052 108832362 + 0.833333 NA intron (NR_049760, intron 8 of 13) intron (NR_049760, intron 8 of 13) 24887 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 273.167-3 chr14 28491141 28491579 + 0.833333 NA Intergenic AluJr4|SINE|Alu 273959 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 206.333-10 chr12 49411361 49411675 + 0.833333 NA intron (NM_001293285, intron 3 of 14) intron (NM_001293285, intron 3 of 14) 22344 NR_033267 100335030 Hs.687044 NR_033267 LOC100335030 - FGFR1 oncogene partner 2 pseudogene pseudo 232.5-22 chr4 28203548 28203855 + 0.833333 NA Intergenic MIRc|SINE|MIR -615881 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 187-24 chr20 59928005 59928328 + 0.833333 NA intron (NM_014258, intron 2 of 44) LTR79|LTR|ERVL 5471 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 191.5-9 chr11 62680694 62680928 + 0.833333 NA Intergenic Intergenic -1694 NM_001286078 51035 Hs.351296 NM_015853 ENSG00000162191 UBXN1 2B28|SAKS1|UBXD10 UBX domain protein 1 protein-coding 237.667-18 chr2 15591759 15592625 + 0.833333 NA intron (NM_004939, intron 1 of 25) CpG 324 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 251.333-13 chr16 58684468 58685053 + 0.833333 NA promoter-TSS (NM_018231) promoter-TSS (NM_018231) 10 NM_001369609 55238 Hs.10499 NM_018231 ENSG00000103042 SLC38A7 SNAT7 solute carrier family 38 member 7 protein-coding 219.334-9 chr4 73417701 73418369 + 0.833333 NA intron (NM_000477, intron 11 of 14) AluSc8|SINE|Alu 13748 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 192.833-15 chr2 11088038 11088451 + 0.833333 NA Intergenic L1MB7|LINE|L1 43932 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 236-26 chr7 96342006 96342747 + 0.833333 NA Intergenic Intergenic -20229 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 253-28 chr6 8107549 8108014 + 0.833333 NA Intergenic AluSx3|SINE|Alu -5186 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 367-24 chr7 87059818 87060333 + 0.833333 NA promoter-TSS (NM_001142749) promoter-TSS (NM_001142749) -421 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 258-16 chr2 30588962 30589303 + 0.833333 NA intron (NM_182551, intron 6 of 6) intron (NM_182551, intron 6 of 6) 141886 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 203-18 chr2 37920165 37920516 + 0.833333 NA Intergenic Intergenic -4947 NM_001170791 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 175-7 chr10 71896773 71897093 + 0.833333 NA Intergenic Intergenic -45682 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 201.667-12 chr14 47671077 47671579 + 0.833333 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 3626 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 221.667-24 chr2 101757076 101757636 + 0.833333 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 59649 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 208.333-12 chr11 110001975 110002336 + 0.833333 NA Intergenic Intergenic -91237 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 194.5-20 chr14 61421781 61422154 + 0.833333 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 100524 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 185.167-22 chr4 115315235 115315676 + 0.833333 NA Intergenic MER1A|DNA|hAT-Charlie -201835 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 277.333-30 chr7 80379198 80379737 + 0.833333 NA Intergenic Intergenic -5028 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 232.667-43 chrX 78659523 78659965 + 0.833333 NA promoter-TSS (NM_152694) promoter-TSS (NM_152694) -416 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 311.5-9 chr20 19786443 19786927 + 0.833333 NA Intergenic Intergenic -99836 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 248.5-20 chr2 126886414 126886813 + 0.833333 NA Intergenic Intergenic -12277 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 164.333-10 chr11 15203745 15204083 + 0.833333 NA intron (NM_001042536, intron 7 of 12) MER58B|DNA|hAT-Charlie 54812 NM_001278315 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 269.667-5 chr10 27657026 27657421 + 0.833333 NA Intergenic L1PB1|LINE|L1 -87392 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 200.333-39 chr7 31176552 31176897 + 0.833333 NA Intergenic L1MC3|LINE|L1 124263 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 183.5-47 chrX 101958391 101958773 + 0.833333 NA Intergenic Intergenic -26555 NM_001282401 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 186.667-27 chr16 5605904 5606219 + 0.833333 NA intron (NR_110902, intron 2 of 2) intron (NR_110902, intron 2 of 2) 10189 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 307.5 chr1 869483 869943 + 0.833333 NA intron (NR_027055, intron 2 of 2) MIRb|SINE|MIR 7089 NR_027055 284593 Hs.449006 NR_027055 ENSG00000230368 FAM41C - family with sequence similarity 41 member C ncRNA 182-29 chr21 20382877 20383397 + 0.833333 NA Intergenic L1PA15|LINE|L1 -124452 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 193.667 chr1 58077006 58077420 + 0.833333 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 173290 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 166-53 chr4 80032933 80033226 + 0.833333 NA intron (NM_001286781, intron 9 of 16) intron (NM_001286781, intron 9 of 16) 40150 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 200.667-37 chr4 24704196 24704456 + 0.833333 NA Intergenic Intergenic -91247 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 295.834-2 chr11 79416243 79416919 + 0.833333 NA intron (NM_001098816, intron 1 of 33) MIRb|SINE|MIR 5645 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 168.5-24 chr2 38509245 38509590 + 0.833333 NA intron (NR_110259, intron 1 of 4) MIR|SINE|MIR 6323 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 174.667-40 chr4 74142098 74142336 + 0.833333 NA intron (NM_001351311, intron 2 of 7) intron (NM_001351311, intron 2 of 7) -15891 NM_001351329 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 300.167 chr10 88764246 88764915 + 0.833333 NA exon (NM_001102469, exon 3 of 9) exon (NM_001102469, exon 3 of 9) 3174 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 231-26 chr4 120071829 120072475 + 0.833333 NA Intergenic Tigger4a|DNA|TcMar-Tigger -5304 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 187.167-19 chr20 21390984 21391414 + 0.833333 NA Intergenic Intergenic 6327 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 225.833-29 chr8 141099251 141099664 + 0.833333 NA Intergenic MER21B|LTR|ERVL -29132 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 302.666-5 chr22 26395421 26396178 + 0.833333 NA Intergenic AluJr|SINE|Alu -33461 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 181.5-11 chr12 57771776 57772157 + 0.833333 NA promoter-TSS (NM_206914) promoter-TSS (NM_206914) 139 NM_023033 4234 Hs.42957 NM_005371 ENSG00000037897 METTL1 C12orf1|TRM8|TRMT8|YDL201w methyltransferase like 1 protein-coding 277.333-3 chr1 153946707 153947122 + 0.833333 NA promoter-TSS (NM_014856) promoter-TSS (NM_014856) -196 NM_014856 9909 Hs.744878 NM_014856 ENSG00000198837 DENND4B KIAA0476 DENN domain containing 4B protein-coding 213.5-15 chr2 188073770 188074094 + 0.833333 NA intron (NR_126396, intron 2 of 2) L1PA15|LINE|L1 213759 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 330.166 chr1 86230268 86230872 + 0.833333 NA Intergenic L1MC2|LINE|L1 -73586 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 277.667-17 chr2 152719116 152719677 + 0.833333 NA exon (NM_001350068, exon 1 of 4) exon (NM_001350068, exon 1 of 4) 759 NR_146431 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 268.667-9 chr14 65412682 65413041 + 0.833333 NA promoter-TSS (NR_024334) promoter-TSS (NR_024334) 131 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 223-27 chr21 27233305 27233718 + 0.833333 NA Intergenic Intergenic -266423 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 226.833-16 chr5 137234737 137235057 + 0.833333 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 106700 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 295.667-4 chr13 46704247 46704816 + 0.833333 NA intron (NM_001164213, intron 11 of 18) intron (NM_001164213, intron 11 of 18) 92630 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 351-6 chr2 7454989 7455621 + 0.833333 NA Intergenic Intergenic 34044 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 171-47 chr4 61555155 61555588 + 0.833333 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 353199 NM_001371342 247.5-37 chr5 10677860 10678255 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 83177 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 167-4 chr1 109866037 109866402 + 0.833333 NA Intergenic L1MC1|LINE|L1 -44630 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 171.167-36 chr8 78618629 78619045 + 0.833333 NA Intergenic AluSc8|SINE|Alu -47252 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 205.833-8 chr12 62564620 62564947 + 0.833333 NA intron (NM_001278469, intron 26 of 35) intron (NM_001278469, intron 26 of 35) 38651 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 248.333-3 chr1 83902394 83902770 + 0.833333 NA intron (NM_001350215, intron 17 of 19) L2-3_Crp|LINE|L2 -41586 NR_119375 101927587 Hs.621230 NR_119375 ENSG00000233008 LINC01725 - long intergenic non-protein coding RNA 1725 ncRNA 167.5-48 chrX 99705726 99705936 + 0.833333 NA Intergenic Intergenic 704442 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 241.667-18 chr20 64057971 64058290 + 0.833333 NA intron (NM_198723, intron 1 of 10) intron (NM_198723, intron 1 of 10) 1158 NM_198723 6919 Hs.505004 NM_003195 ENSG00000171703 TCEA2 TFIIS transcription elongation factor A2 protein-coding 249.167-7 chr15 98729352 98729755 + 0.833333 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -54873 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 244-8 chr18 4384809 4385347 + 0.833333 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 70188 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 183.833-6 chr10 118113603 118114063 + 0.833333 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -66892 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 209.833-20 chr5 63137456 63137735 + 0.833333 NA Intergenic Intergenic 558776 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 204.833-28 chr8 89326962 89327253 + 0.833333 NA Intergenic Intergenic 430604 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 262.667-4 chr1 151678391 151678872 + 0.833333 NA intron (NM_030918, intron 7 of 11) L1MB2|LINE|L1 38172 NM_007185 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP Elav-like family member 3 protein-coding 277.5-24 chr8 42385574 42385966 + 0.833333 NA Intergenic Intergenic -5991 NM_001135694 7419 Hs.699301 NM_005662 ENSG00000078668 VDAC3 HD-VDAC3|VDAC-3 voltage dependent anion channel 3 protein-coding 184.5-8 chr10 115394047 115394281 + 0.833333 NA intron (NM_207303, intron 19 of 28) MIRb|SINE|MIR 300799 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 167-23 chr2 239698153 239698521 + 0.833333 NA Intergenic Intergenic -64523 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 198.333-23 chr19 14217485 14217746 + 0.833333 NA Intergenic Intergenic -11446 NM_001008701 22859 Hs.94229 NM_014921 ENSG00000072071 ADGRL1 CIRL1|CL1|LEC2|LPHN1 adhesion G protein-coupled receptor L1 protein-coding 167.667-44 chr7 37794147 37794529 + 0.833333 NA Intergenic Intergenic -54259 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 186.5-15 chr2 168757765 168758133 + 0.833333 NA intron (NM_001256126, intron 8 of 10) intron (NM_001256126, intron 8 of 10) 28480 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 172.833-15 chr2 168116423 168116663 + 0.833333 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) 131052 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 191.667-9 chr11 112435685 112436065 + 0.833333 NA Intergenic L1M4|LINE|L1 -46357 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 202.167-5 chr11 14788036 14788453 + 0.833333 NA intron (NM_000922, intron 3 of 15) A-rich|Low_complexity|Low_complexity 103961 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 217.333-43 chr8 66533599 66533886 + 0.833333 NA Intergenic Intergenic 40176 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 178.833-7 chr12 2358350 2358754 + 0.833333 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 88776 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 201 chr1 59133450 59133896 + 0.833333 NA intron (NR_027120, intron 1 of 2) intron (NR_027120, intron 1 of 2) 13134 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 220.333-19 chr20 54547600 54547980 + 0.833333 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 72197 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 168-6 chr1 227298017 227298340 + 0.833333 NA intron (NM_001366019, intron 1 of 36) intron (NM_001366019, intron 1 of 36) 20314 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 250.5-14 chr19 3304658 3305282 + 0.833333 NA Intergenic AluSz6|SINE|Alu -54660 NM_001245005 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 209.333-45 chr9 115593509 115593956 + 0.833333 NA Intergenic Intergenic 150507 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 322.167-2 chr10 65420333 65420992 + 0.833333 NA Intergenic MER4E|LTR|ERV1 -150763 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 168.333-58 chr6 65338027 65338414 + 0.833333 NA intron (NM_198283, intron 9 of 9) intron (NM_198283, intron 9 of 9) 36802 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 176.167-38 chr6 43576000 43576330 + 0.833333 NA promoter-TSS (NM_001291970) promoter-TSS (NM_001291970) -20 NM_001291969 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 168.333-10 chr11 12865949 12866256 + 0.833333 NA intron (NM_021961, intron 5 of 12) intron (NM_021961, intron 5 of 12) 123446 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 201.5 chr1 201266855 201267415 + 0.833333 NA Intergenic Intergenic -16317 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 292.667-20 chr8 136794161 136794744 + 0.833333 NA intron (NR_147196, intron 3 of 5) intron (NR_147196, intron 3 of 5) 263654 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 167.333-43 chr5 13818685 13818960 + 0.833333 NA intron (NM_001369, intron 41 of 78) intron (NM_001369, intron 41 of 78) 125658 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 170.333-13 chr12 48698792 48699000 + 0.833333 NA intron (NM_001240, intron 5 of 8) AluSp|SINE|Alu -16658 NM_017822 54934 Hs.505412 NM_017822 ENSG00000139620 KANSL2 C12orf41|NSL2 KAT8 regulatory NSL complex subunit 2 protein-coding 169.667-15 chr11 28489704 28490029 + 0.833333 NA Intergenic MIRb|SINE|MIR -12318 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 210.667-12 chr12 68830148 68830707 + 0.833333 NA intron (NM_001145337, intron 8 of 10) intron (NM_001145337, intron 8 of 10) 21403 NM_001145340 4193 Hs.484551 NM_002392 ENSG00000135679 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene protein-coding 168.333-2 chr1 64670022 64670255 + 0.833333 NA intron (NM_020925, intron 16 of 26) intron (NM_020925, intron 16 of 26) -74835 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 223-12 chr15 43440554 43441059 + 0.833333 NA intron (NM_001355001, intron 16 of 28) AluJb|SINE|Alu 52350 NM_001141980 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 166.333-38 chr3 5799440 5799840 + 0.833333 NA Intergenic Intergenic -549385 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 172-3 chr10 57470137 57470386 + 0.833333 NA Intergenic Intergenic -165702 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 167.167-10 chr10 71413408 71413748 + 0.833333 NA intron (NM_052836, intron 1 of 12) L1MEg|LINE|L1 16644 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 212-34 chr3 108062232 108062611 + 0.833333 NA intron (NM_198793, intron 3 of 8) intron (NM_198793, intron 3 of 8) 28667 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 242.833-9 chr14 62360584 62361117 + 0.833333 NA Intergenic MER89-int|LTR|ERV1 -220877 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 173.833-4 chr1 81414548 81414930 + 0.833333 NA intron (NM_001366004, intron 2 of 27) AmnSINE1|SINE|5S-Deu-L2 108344 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 262.833-18 chr8 102821347 102821704 + 0.833333 NA Intergenic AluSx|SINE|Alu 14703 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 235.667-24 chr6 61366753 61367171 + 0.833333 NA Intergenic ALR/Alpha|Satellite|centr -207168 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 179.167-14 chr19 38398418 38398787 + 0.833333 NA non-coding (NR_073032, exon 6 of 6) non-coding (NR_073032, exon 6 of 6) -4533 NM_174905 147965 Hs.355162 NM_174905 ENSG00000130244 FAM98C - family with sequence similarity 98 member C protein-coding 176.667-34 chr21 30244722 30245096 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -28812 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 188.833-5 chr10 114904969 114905371 + 0.833333 NA Intergenic L2a|LINE|L2 -33025 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 182.833-33 chr6 39402310 39402768 + 0.833333 NA intron (NM_001289024, intron 2 of 9) intron (NM_001289024, intron 2 of 9) 28851 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 179.667-39 chr5 64146840 64147223 + 0.833333 NA Intergenic L2a|LINE|L2 -18812 NM_001323292 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 196.167-29 chr4 72341221 72341482 + 0.833333 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 227870 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 247.833-2 chr1 246019383 246019739 + 0.833333 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 397851 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 201.833-14 chr3 124408653 124409052 + 0.833333 NA intron (NM_001024660, intron 13 of 59) intron (NM_001024660, intron 13 of 59) 34520 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 213.833-23 chrX 5979762 5980134 + 0.833333 NA intron (NM_001282145, intron 4 of 6) (TATATGA)n|Simple_repeat|Simple_repeat -246410 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 305.833-11 chr3 24496251 24496784 + 0.833333 NA promoter-TSS (NM_001354708) promoter-TSS (NM_001354708) -809 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 291.167-17 chr8 84290797 84291275 + 0.833333 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 106370 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 255.5-14 chr14 97965583 97965935 + 0.833333 NA intron (NR_152748, intron 2 of 2) intron (NR_152748, intron 2 of 2) 12365 NR_152749 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 233.333-9 chr14 25416539 25416850 + 0.833333 NA Intergenic Intergenic -366397 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 202.833-17 chr22 22809866 22810129 + 0.833333 NA Intergenic Intergenic -12779 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 225-21 chr20 62081605 62082300 + 0.833333 NA Intergenic L1MB2|LINE|L1 -16142 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 213.5-20 chr4 33802249 33802661 + 0.833333 NA Intergenic Intergenic 237438 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 250.833 chr10 131699572 131699985 + 0.833333 NA Intergenic Intergenic 90421 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 329-7 chr3 467918 468536 + 0.833333 NA Intergenic L1MA2|LINE|L1 -82432 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 170.667-58 chr9 75963917 75964316 + 0.833333 NA intron (NR_120409, intron 2 of 19) intron (NR_120409, intron 2 of 19) 73443 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 193.167-20 chr3 6856428 6856972 + 0.833333 NA Intergenic Intergenic -4415 NM_000844 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 278.833-8 chr4 75908121 75908769 + 0.833333 NA Intergenic MER65C|LTR|ERV1 -5993 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 191.333-27 chr22 43815016 43815456 + 0.833333 NA Intergenic L1MC4|LINE|L1 -2931 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 264.333-15 chr2 123547882 123548508 + 0.833333 NA Intergenic Intergenic -474714 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 176.167-43 chr7 78528177 78528515 + 0.833333 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 181104 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 209-2 chr1 26501020 26501349 + 0.833333 NA Intergenic CpG -28577 NM_002953 6195 Hs.149957 NM_002953 ENSG00000117676 RPS6KA1 HU-1|MAPKAPK1A|RSK|RSK1|p90Rsk ribosomal protein S6 kinase A1 protein-coding 197.833-8 chr11 84447854 84448334 + 0.833333 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -130755 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 257.5-12 chr15 65083269 65083617 + 0.833333 NA Intergenic Intergenic 6627 NM_001101362 390594 Hs.586890 NM_001101362 ENSG00000234438 KBTBD13 HCG1645727|NEM6 kelch repeat and BTB domain containing 13 protein-coding 207.667-19 chr17 34789206 34789621 + 0.833333 NA Intergenic Intergenic 172047 NM_001193530 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 177-4 chr10 60738835 60739340 + 0.833333 NA Intergenic Intergenic -5559 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 172.333-53 chr8 87159294 87159587 + 0.833333 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 293025 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 210.167-11 chr14 29519563 29519979 + 0.833333 NA Intergenic AluSx3|SINE|Alu 407325 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 212.667-35 chr3 141616889 141617192 + 0.833333 NA Intergenic LTR90B|LTR|LTR -46159 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 218.167-23 chr8 60250956 60251408 + 0.833333 NA intron (NR_135821, intron 3 of 9) L2a|LINE|L2 30218 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 235.5-6 chr13 93612698 93613164 + 0.833333 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 245542 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 169.334-7 chr5 160792578 160793168 + 0.833333 NA intron (NM_001366652, intron 1 of 24) intron (NM_001366652, intron 1 of 24) 59338 NM_025153 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 202.667-7 chr12 120575099 120575472 + 0.833333 NA intron (NM_014868, intron 14 of 16) intron (NM_014868, intron 14 of 16) 6113 NM_198202 51367 Hs.279913 NM_015918 ENSG00000167272 POP5 HSPC004|RPP2|RPP20|hPop5 POP5 homolog, ribonuclease P/MRP subunit protein-coding 193.833-16 chr18 7298795 7299164 + 0.833333 NA Intergenic L1MB7|LINE|L1 67875 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 207.833-16 chr2 229922134 229922511 + 0.833333 NA promoter-TSS (NM_001284215) promoter-TSS (NM_001284215) -181 NM_174899 130888 Hs.140666 NM_174899 ENSG00000153832 FBXO36 Fbx36 F-box protein 36 protein-coding 263.167-6 chr14 25874366 25874912 + 0.833333 NA Intergenic Intergenic 678791 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 164.333-53 chr8 125232588 125232994 + 0.833333 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 140931 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 235.667-21 chr3 96034388 96035039 + 0.833333 NA Intergenic L1MC1|LINE|L1 -325251 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 247.667-7 chr12 103171467 103171824 + 0.833333 NA Intergenic L2|LINE|L2 19803 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 208.5-37 chr6 13877396 13877695 + 0.833333 NA Intergenic Tigger3c|DNA|TcMar-Tigger -46901 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 188-51 chr7 66053552 66053869 + 0.833333 NA Intergenic MLT1G|LTR|ERVL-MaLR -22109 NM_000048 435 Hs.632015 NM_000048 ENSG00000126522 ASL ASAL argininosuccinate lyase protein-coding 243-20 chr6 129773459 129773770 + 0.833333 NA Intergenic Intergenic -63437 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 202.833-29 chrX 155094453 155095059 + 0.833333 NA intron (NM_001018055, intron 7 of 10) L1MD2|LINE|L1 23336 NM_001242640 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 198.167-6 chr10 74793428 74793873 + 0.833333 NA Intergenic L1ME3C|LINE|L1 -31605 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 190.5-22 chr2 3960114 3960494 + 0.833333 NA non-coding (NR_037881, exon 2 of 3) non-coding (NR_037881, exon 2 of 3) 13728 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 200-29 chr3 197196566 197196921 + 0.833333 NA intron (NM_001366216, intron 4 of 23) intron (NM_001366216, intron 4 of 23) -12612 NM_001204387 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 230-24 chr2 61898967 61899330 + 0.833333 NA intron (NM_001321781, intron 1 of 2) MER34|LTR|ERV1 -6494 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 228.667-29 chr3 98040412 98040807 + 0.833333 NA Intergenic MIR|SINE|MIR -5305 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 191.667-27 chr2 68700893 68701207 + 0.833333 NA Intergenic L1MEf|LINE|L1 -33761 NM_001364820 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 231.833 chr11 10810778 10811074 + 0.833333 NA intron (NR_120540, intron 2 of 2) intron (NR_120540, intron 2 of 2) 1629 NR_120540 101928053 Hs.637773 NR_120540 ENSG00000246308 LOC101928053 - uncharacterized LOC101928053 ncRNA 188-42 chr5 126658283 126658615 + 0.833333 NA Intergenic Intergenic 26744 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 256.833-16 chr7 41693959 41694458 + 0.833333 NA intron (NR_027118, intron 1 of 3) intron (NR_027118, intron 1 of 3) 289 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 191-29 chr2 232227561 232227914 + 0.833333 NA intron (NR_046477, intron 9 of 18) intron (NR_046477, intron 9 of 18) 55084 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 220.5-16 chr16 61936523 61936977 + 0.833333 NA intron (NM_001796, intron 2 of 11) MamTip3|DNA|hAT-Tip100 99688 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 253-4 chr10 20910380 20910777 + 0.833333 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -12976 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 316.667 chr1 146012132 146012769 + 0.833333 NA Intergenic L1ME1|LINE|L1 9285 NM_145277 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 168.333-22 chr14 72948058 72948408 + 0.833333 NA intron (NM_001352448, intron 8 of 13) AluJo|SINE|Alu 21769 NM_001352447 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 230.833-17 chr6 152206131 152206592 + 0.833333 NA exon (NM_033071, exon 125 of 146) exon (NM_033071, exon 125 of 146) -20983 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 287.5-21 chr6 133954646 133955267 + 0.833333 NA intron (NM_004865, intron 1 of 6) intron (NM_004865, intron 1 of 6) 1732 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 202.5-37 chr3 54999261 54999569 + 0.833333 NA intron (NM_018398, intron 31 of 37) intron (NM_018398, intron 31 of 37) -32313 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 277.833-12 chr4 106233925 106234360 + 0.833333 NA intron (NM_001290768, intron 16 of 26) intron (NM_001290768, intron 16 of 26) -81468 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 246.5-24 chr3 197292340 197292728 + 0.833333 NA intron (NM_001366216, intron 3 of 23) L1MB2|LINE|L1 1414 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 202.833 chr1 104269628 104269906 + 0.833333 NA Intergenic L1ME3|LINE|L1 196744 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 240.333-2 chr1 56935022 56935436 + 0.833333 NA intron (NM_000066, intron 9 of 11) intron (NM_000066, intron 9 of 11) 30786 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 205-7 chr14 62187786 62188379 + 0.833333 NA Intergenic Intergenic -48109 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 209-10 chr12 52392158 52392564 + 0.833333 NA Intergenic AluJo|SINE|Alu -6709 NM_033045 3890 Hs.272336 NM_033045 ENSG00000161849 KRT84 HB4|KRTHB4 keratin 84 protein-coding 227.5-33 chr7 50448130 50448540 + 0.833333 NA intron (NM_001346562, intron 1 of 3) intron (NM_001346562, intron 1 of 3) 2015 NM_001287492 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 254.167-17 chr20 51192793 51193170 + 0.833333 NA Intergenic Intergenic -169874 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 169-47 chr8 125107569 125107837 + 0.833333 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 15843 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 320.833-10 chr8 27351923 27352335 + 0.833333 NA intron (NM_173175, intron 1 of 29) intron (NM_173175, intron 1 of 29) 26565 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 186.5-14 chr2 56279874 56280180 + 0.833333 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -94257 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 188.167-8 chr12 5420340 5420679 + 0.833333 NA Intergenic L1ME2z|LINE|L1 -11599 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 177.833-3 chr1 113695830 113696108 + 0.833333 NA TTS (NM_001323043) TTS (NM_001323043) 63186 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 195-20 chr17 50372950 50373216 + 0.833333 NA promoter-TSS (NM_001166131) promoter-TSS (NM_001166131) 101 NM_016504 51264 Hs.7736 NM_016504 ENSG00000108826 MRPL27 L27mt mitochondrial ribosomal protein L27 protein-coding 168.667-46 chr6 168748248 168748515 + 0.833333 NA Intergenic L1ME2z|LINE|L1 216001 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 243-18 chr5 133378616 133379006 + 0.833333 NA intron (NM_015082, intron 4 of 15) L1M4b|LINE|L1 48895 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 178.5-6 chr11 13834581 13835063 + 0.833333 NA intron (NR_149108, intron 3 of 3) intron (NR_149108, intron 3 of 3) 35794 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 212.333 chr1 40591953 40592476 + 0.833333 NA Intergenic Intergenic 60577 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 225.833-13 chr2 20610296 20610679 + 0.833333 NA Intergenic L1MC1|LINE|L1 -17939 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 273.333-9 chr2 96264101 96264627 + 0.833333 NA intron (NM_017849, intron 2 of 3) intron (NM_017849, intron 2 of 3) 1633 NM_001193304 55654 Hs.164303 NM_017849 ENSG00000135956 TMEM127 - transmembrane protein 127 protein-coding 174.667-60 chr9 34875149 34875484 + 0.833333 NA Intergenic Intergenic 20448 NM_001309426 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 187-4 chr1 156129443 156129833 + 0.833333 NA intron (NM_001282624, intron 2 of 10) intron (NM_001282624, intron 2 of 10) 3468 NM_001257374 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 185-17 chr12 29452352 29452774 + 0.833333 NA intron (NM_001353179, intron 21 of 25) intron (NM_001353179, intron 21 of 25) 47130 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 186.5-22 chr3 124387232 124387642 + 0.833333 NA intron (NM_001024660, intron 11 of 59) MIRb|SINE|MIR 13105 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 238.667-2 chr11 47607879 47608498 + 0.833333 NA Intergenic MIRb|SINE|MIR -13777 NM_031909 114900 Hs.662633 NM_031909 ENSG00000172247 C1QTNF4 CTRP4|ZACRP4 C1q and TNF related 4 protein-coding 230.167-6 chr11 17601573 17601969 + 0.833333 NA intron (NM_001277269, intron 30 of 54) intron (NM_001277269, intron 30 of 54) 54398 NM_001292063 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 185.167-9 chr14 72819647 72820014 + 0.833333 NA intron (NM_001280542, intron 1 of 10) AluJb|SINE|Alu 72819 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 227-9 chr11 63946064 63946352 + 0.833333 NA intron (NM_024771, intron 2 of 7) AluJb|SINE|Alu 6877 NM_001300800 79829 Hs.523753 NM_024771 ENSG00000110583 NAA40 NAT11|NatD|PATT1|hNatD N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding 262.5-21 chr4 107227106 107227448 + 0.833333 NA Intergenic Intergenic -190964 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 195.5-7 chr14 41353489 41353893 + 0.833333 NA Intergenic L1PB4|LINE|L1 -253165 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 262.333-20 chr7 47152974 47153524 + 0.833333 NA Intergenic Intergenic 311554 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 189.333-31 chr5 100743097 100743484 + 0.833333 NA Intergenic Intergenic 73275 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 192.667-22 chr2 183340068 183340455 + 0.833333 NA Intergenic Intergenic 215818 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 327.667-4 chr13 104978674 104979271 + 0.833333 NA Intergenic Intergenic -486895 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 219-13 chr17 49608035 49608495 + 0.833333 NA intron (NM_001007230, intron 8 of 11) intron (NM_001007230, intron 8 of 11) 18324 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 176-43 chr8 130541599 130541916 + 0.833333 NA Intergenic Intergenic -98083 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 177.167-6 chr10 121753785 121754169 + 0.833333 NA intron (NM_001001976, intron 11 of 11) L1MC4|LINE|L1 -155519 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 250.333-7 chr10 55102616 55103156 + 0.833333 NA intron (NM_001354404, intron 3 of 34) Tigger2|DNA|TcMar-Tigger -301595 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 226.667-16 chr15 75454037 75454376 + 0.833333 NA intron (NM_001145357, intron 1 of 20) CpG-8441 1609 NM_001145357 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 238.333-24 chr20 16749596 16750277 + 0.833333 NA exon (NM_020157, exon 3 of 4) exon (NM_020157, exon 3 of 4) 1583 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 214.333-4 chr10 28849801 28850327 + 0.833333 NA intron (NM_001278522, intron 3 of 4) intron (NM_001278522, intron 3 of 4) 3656 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 199-11 chr14 44701602 44701990 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR 97330 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 237.333-37 chr8 6374765 6375116 + 0.833333 NA Intergenic Intergenic 31608 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 209.5-5 chr11 23976928 23977209 + 0.833333 NA Intergenic Intergenic -519985 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 225.167-18 chr21 26089728 26090252 + 0.833333 NA exon (NM_001204302, exon 3 of 16) exon (NM_001204302, exon 3 of 16) 50400 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 174.5-29 chr6 47102926 47103176 + 0.833333 NA Intergenic Intergenic -60719 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 273.5-12 chr19 35492768 35493128 + 0.833333 NA Intergenic MIR|SINE|MIR -2484 NM_001244847 388533 Hs.112457 NM_207392 ENSG00000188508 KRTDAP KDAP|UNQ467 keratinocyte differentiation associated protein protein-coding 185.833-15 chr2 78465211 78465695 + 0.833333 NA Intergenic MamGypLTR1c|LTR|Gypsy -80078 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 176.167-37 chr6 27280340 27280611 + 0.833333 NA Intergenic Intergenic 31757 NM_033482 94026 Hs.729955 NM_033482 ENSG00000158553 POM121L2 POM121-L|POM121L POM121 transmembrane nucleoporin like 2 protein-coding 165.667-38 chr4 82059389 82059659 + 0.833333 NA Intergenic Intergenic 314467 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 257.833-2 chr14 64495388 64495993 + 0.833333 NA intron (NM_001354685, intron 2 of 4) AluSp|SINE|Alu 2302 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 220.667-4 chr1 212748390 212748805 + 0.833333 NA intron (NM_015471, intron 4 of 5) L1ME3|LINE|L1 43180 NM_001042549 25936 Hs.497692 NM_015471 ENSG00000117697 NSL1 C1orf48|DC8|MIS14 NSL1 component of MIS12 kinetochore complex protein-coding 178.667-29 chr3 86814713 86815099 + 0.833333 NA Intergenic Intergenic 176243 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 167.667-17 chr18 72037840 72038145 + 0.833333 NA Intergenic Intergenic -255766 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 171.5-30 chr21 20895689 20896211 + 0.833333 NA Intergenic Intergenic -92842 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 209-36 chr7 120554192 120554566 + 0.833333 NA intron (NM_012281, intron 1 of 5) MER5A|DNA|hAT-Charlie 281204 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 251.167-14 chr3 114383756 114384185 + 0.833333 NA promoter-TSS (NM_001164342) promoter-TSS (NM_001164342) -328 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 201.5-11 chr12 133120456 133120845 + 0.833333 NA exon (NM_001277291, exon 2 of 2) exon (NM_001277291, exon 2 of 2) 9823 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 198.833-5 chr11 1760755 1761029 + 0.833333 NA intron (NM_001909, intron 2 of 8) intron (NM_001909, intron 2 of 8) 3035 NM_001909 1509 Hs.654447 NM_001909 ENSG00000117984 CTSD CLN10|CPSD|HEL-S-130P cathepsin D protein-coding 293-12 chr2 218414802 218415194 + 0.833333 NA Intergenic AluY|SINE|Alu -4125 NM_007127 7429 Hs.654595 NM_007127 ENSG00000127831 VIL1 D2S1471|VIL villin 1 protein-coding 216.833-12 chr17 68275568 68275892 + 0.833333 NA intron (NM_004694, intron 2 of 5) AluSx3|SINE|Alu 15397 NM_004694 9120 Hs.42645 NM_004694 ENSG00000108932 SLC16A6 MCT6|MCT7 solute carrier family 16 member 6 protein-coding 259.167-10 chr5 13367209 13367617 + 0.833333 NA Intergenic L1MC1|LINE|L1 -334527 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 189.667-4 chr10 13114618 13114896 + 0.833333 NA intron (NM_001008213, intron 6 of 15) (AT)n|Simple_repeat|Simple_repeat 14594 NM_001008212 10133 Hs.332706 NM_021980 ENSG00000123240 OPTN ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP optineurin protein-coding 254.167-2 chr1 44936869 44937289 + 0.833333 NA intron (NM_001166588, intron 4 of 9) intron (NM_001166588, intron 4 of 9) 49516 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 214-52 chr8 140896085 140896393 + 0.833333 NA intron (NM_001352700, intron 1 of 34) L1MEg1|LINE|L1 104765 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 226.167-29 chrX 79439559 79439971 + 0.833333 NA Intergenic Intergenic -72213 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 273.167-18 chr8 119390317 119390775 + 0.833333 NA Intergenic L3|LINE|CR1 -25900 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 234-15 chr14 81960424 81960817 + 0.833333 NA Intergenic MIRc|SINE|MIR -217482 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 309.333-17 chr6 47526581 47526996 + 0.833333 NA intron (NM_012120, intron 2 of 17) intron (NM_012120, intron 2 of 17) 48999 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 216.833-24 chr8 47640216 47640713 + 0.833333 NA intron (NM_001080394, intron 10 of 19) intron (NM_001080394, intron 10 of 19) -13624 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 198.167-19 chr20 22234831 22235446 + 0.833333 NA Intergenic Intergenic 47663 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 200.5-12 chr14 68682935 68683279 + 0.833333 NA TTS (NM_001321818) TTS (NM_001321818) -54320 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 293.167-2 chr12 56359217 56359737 + 0.833333 NA intron (NM_198332, intron 1 of 23) intron (NM_198332, intron 1 of 23) 630 NM_198332 6773 Hs.530595 NM_005419 ENSG00000170581 STAT2 IMD44|ISGF-3|P113|STAT113 signal transducer and activator of transcription 2 protein-coding 190.333-8 chr11 85381097 85381398 + 0.833333 NA intron (NM_001142699, intron 3 of 27) Charlie8|DNA|hAT-Charlie 246023 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 166.833-23 chr3 117167242 117167498 + 0.833333 NA Intergenic Intergenic 245939 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 222.667-31 chr4 120813190 120813555 + 0.833333 NA intron (NM_001300824, intron 6 of 13) L1MC5|LINE|L1 109494 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 188.333-28 chr22 35188936 35189213 + 0.833333 NA intron (NR_126356, intron 2 of 5) AluSx|SINE|Alu 41982 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 221.667-19 chr18 7825530 7825888 + 0.833333 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 258393 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 255.5-11 chr12 95998166 95998852 + 0.833333 NA Intergenic L2b|LINE|L2 -2144 NM_001258333 3034 Hs.190783 NM_002108 ENSG00000084110 HAL HIS|HSTD histidine ammonia-lyase protein-coding 206.5-42 chr4 34490416 34490769 + 0.833333 NA Intergenic L1MA3|LINE|L1 -220845 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 243.167-3 chr11 134679961 134680459 + 0.833333 NA Intergenic L1MC3|LINE|L1 -55735 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 209.167-16 chr17 66604703 66605052 + 0.833333 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -182195 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 253.833-8 chr3 139111456 139112206 + 0.833333 NA intron (NR_026783, intron 2 of 2) intron (NR_026783, intron 2 of 2) 7646 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 176.167-42 chr7 21366956 21367351 + 0.833333 NA Intergenic Intergenic -60930 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 210.833-27 chr7 88999988 89000354 + 0.833333 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -204434 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 234.333-12 chr14 78278546 78278861 + 0.833333 NA intron (NM_001366425, intron 3 of 19) intron (NM_001366425, intron 3 of 19) 108330 NM_001366425 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 287.833-9 chr19 38974847 38975558 + 0.833333 NA intron (NR_104026, intron 1 of 5) intron (NR_104026, intron 1 of 5) 540 NM_024907 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 195.167-10 chr12 75472969 75473425 + 0.833333 NA Intergenic L1ME4a|LINE|L1 -7558 NM_006851 11010 Hs.205558 NM_006851 ENSG00000139278 GLIPR1 CRISP7|GLIPR|RTVP1 GLI pathogenesis related 1 protein-coding 223.333-2 chr1 28367458 28367828 + 0.833333 NA Intergenic Intergenic -2097 NM_001350161 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 183.167-29 chr5 77435387 77435785 + 0.833333 NA intron (NM_018268, intron 12 of 12) intron (NM_018268, intron 12 of 12) 56730 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 256.167-11 chr2 9587235 9587741 + 0.833333 NA exon (NM_006826, exon 5 of 6) exon (NM_006826, exon 5 of 6) -31658 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 197.667-31 chr2 167855307 167855794 + 0.833333 NA intron (NM_020981, intron 1 of 1) intron (NM_020981, intron 1 of 1) 36878 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 168.167-28 chr4 80061749 80062152 + 0.833333 NA intron (NM_001286781, intron 3 of 16) intron (NM_001286781, intron 3 of 16) 11279 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 284-28 chr8 112153536 112153986 + 0.833333 NA Intergenic L1MA10|LINE|L1 -489732 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 195.5-17 chr2 38448861 38449223 + 0.833333 NA Intergenic Intergenic 17748 NR_146454 100996902 Hs.128280 NR_146454 ENSG00000235009 LINC01883 - long intergenic non-protein coding RNA 1883 ncRNA 202.5-48 chr6 42648075 42648749 + 0.833333 NA intron (NM_015255, intron 22 of 46) intron (NM_015255, intron 22 of 46) 74185 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 206.667-5 chr1 206545751 206546055 + 0.833333 NA intron (NM_182664, intron 2 of 4) L1MEc|LINE|L1 -11261 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 240.833-8 chr2 6772998 6773366 + 0.833333 NA Intergenic Intergenic -2871 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 170.333-35 chr21 45820796 45821076 + 0.833333 NA intron (NM_001348243, intron 3 of 15) intron (NM_001348243, intron 3 of 15) 15483 NR_038876 100129027 Hs.689591 NR_038876 ENSG00000205424 LOC100129027 - uncharacterized LOC100129027 ncRNA 170.5-18 chr17 76195852 76196262 + 0.833333 NA intron (NM_052916, intron 2 of 18) MER66B|LTR|ERV1 44436 NM_001330501 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 218.833-16 chr3 168837207 168837619 + 0.833333 NA Intergenic Intergenic -64532 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 175.5-24 chr16 62732399 62732785 + 0.833333 NA Intergenic Intergenic -696154 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 184.667-19 chr15 66803650 66804005 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie 101591 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 176.167-12 chr13 73849367 73849720 + 0.833333 NA intron (NM_007249, intron 3 of 7) intron (NM_007249, intron 3 of 7) 284386 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 188.5-50 chr7 98241433 98241816 + 0.833333 NA intron (NM_015395, intron 6 of 25) intron (NM_015395, intron 6 of 25) 10608 NM_015395 25851 Hs.592281 NM_015395 ENSG00000205356 TECPR1 - tectonin beta-propeller repeat containing 1 protein-coding 207.833-14 chr2 27955045 27955369 + 0.833333 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -41160 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 192-6 chr10 68378616 68378919 + 0.833333 NA intron (NM_001278225, intron 11 of 11) A-rich|Low_complexity|Low_complexity 28422 NM_017987 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 242-32 chr7 148809273 148809742 + 0.833333 NA intron (NM_001203247, intron 17 of 19) intron (NM_001203247, intron 17 of 19) 73978 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 199.167-14 chr2 223875929 223876206 + 0.833333 NA 3' UTR (NM_020830, exon 12 of 12) 3' UTR (NM_020830, exon 12 of 12) -38485 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 186.833-15 chr4 92311109 92311470 + 0.833333 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 6890 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 199.833-23 chr5 54902261 54902621 + 0.833333 NA Intergenic L1MA9|LINE|L1 83152 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 203.167-14 chr2 40243967 40244370 + 0.833333 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 186136 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 163.333-30 chr2 187138201 187138399 + 0.833333 NA Intergenic Intergenic -289130 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 221.167-2 chr1 109987483 109988284 + 0.833333 NA intron (NM_001242673, intron 1 of 16) MIR|SINE|MIR 3118 NM_006621 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 165.167-48 chr8 121232529 121232824 + 0.833333 NA Intergenic Intergenic -406670 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 174.333 chr1 23216659 23216935 + 0.833333 NA Intergenic MIRb|SINE|MIR -22068 NM_000864 3352 Hs.121482 NM_000864 ENSG00000179546 HTR1D 5-HT1D|HT1DA|HTR1DA|HTRL|RDC4 5-hydroxytryptamine receptor 1D protein-coding 212.5-20 chr21 32624792 32625125 + 0.833333 NA Intergenic Intergenic -12087 NM_001350335 56683 Hs.5811 NM_017835 ENSG00000159079 CFAP298 C21orf48|C21orf59|CILD26|FBB18|Kur cilia and flagella associated protein 298 protein-coding 179.5 chr1 69263980 69264374 + 0.833333 NA Intergenic Intergenic -169078 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 289.5-12 chr6 18903936 18904678 + 0.833333 NA Intergenic Intergenic 276173 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 245.5-4 chr1 227564211 227564642 + 0.833333 NA intron (NM_001367909, intron 1 of 3) MER57E3|LTR|ERV1 870 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 187.5-23 chr2 217842934 217843202 + 0.833333 NA intron (NM_001308023, intron 16 of 29) L2a|LINE|L2 -9335 NR_145792 109623482 NR_145792 SNORA115 - small nucleolar RNA, H/ACA box 115 snoRNA 243.667-15 chr15 42164622 42165010 + 0.833333 NA intron (NM_015289, intron 18 of 24) intron (NM_015289, intron 18 of 24) -8180 NM_213600 255189 Hs.231873 NM_213600 ENSG00000168907 PLA2G4F PLA2G4FZ phospholipase A2 group IVF protein-coding 308-10 chr2 24137780 24138213 + 0.833333 NA exon (NM_001145710, exon 4 of 11) exon (NM_001145710, exon 4 of 11) 14527 NM_001145710 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 231.667 chr1 231192543 231193083 + 0.833333 NA intron (NM_001300889, intron 3 of 11) intron (NM_001300889, intron 3 of 11) -5186 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 212.5-10 chr11 24525515 24525892 + 0.833333 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 28650 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 178.5-18 chr15 72331377 72331755 + 0.833333 NA Intergenic AluJr|SINE|Alu -11409 NM_052840 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP Elav-like family member 6 protein-coding 229.333-25 chr3 74067326 74067789 + 0.833333 NA Intergenic Intergenic 258313 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 177.333-5 chr10 12331712 12332096 + 0.833333 NA Intergenic MER47A|DNA|TcMar-Tigger -17643 NM_153498 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 200-9 chr11 113617688 113618094 + 0.833333 NA Intergenic Intergenic 88417 NM_001288750 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 245.834-3 chr15 86118665 86119381 + 0.833333 NA intron (NM_152336, intron 1 of 24) MIRb|SINE|MIR -2306 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 322.167-9 chr6 27177915 27178491 + 0.833333 NA Intergenic LTR10B2|LTR|ERV1 30577 NR_036096 100422934 NR_036096 ENSG00000265565 MIR3143 mir-3143 microRNA 3143 ncRNA 224.667-43 chr7 116988203 116988548 + 0.833333 NA intron (NR_161423, intron 1 of 13) intron (NR_161423, intron 1 of 13) -26537 NM_001369602 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 229.333-16 chr14 76165550 76165929 + 0.833333 NA intron (NM_001322028, intron 2 of 9) intron (NM_001322028, intron 2 of 9) 11385 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 226.333-18 chr5 6581068 6581497 + 0.833333 NA promoter-TSS (NR_024423) promoter-TSS (NR_024423) -854 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 195.833-16 chr2 101196984 101197450 + 0.833333 NA Intergenic Intergenic 45557 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 208-33 chr3 181755634 181756021 + 0.833333 NA Intergenic Intergenic 43902 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 180.833-15 chr3 185455902 185456292 + 0.833333 NA intron (NM_004721, intron 7 of 13) intron (NM_004721, intron 7 of 13) 42938 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 167.833-15 chr14 50940060 50940310 + 0.833333 NA intron (NM_002863, intron 1 of 19) Kanga2_a|DNA|TcMar-Tc2 4298 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 181.833-20 chr4 73569374 73569740 + 0.833333 NA Intergenic Intergenic 50879 NM_001270391 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 184-12 chr11 22874735 22875154 + 0.833333 NA Intergenic L1MA4|LINE|L1 -14470 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 183-41 chr7 13018342 13018707 + 0.833333 NA Intergenic Charlie21a|DNA|hAT-Charlie 330891 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 167.167-25 chr5 32643227 32643725 + 0.833333 NA Intergenic Intergenic -47396 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 218-6 chr10 94717681 94718011 + 0.833333 NA intron (NM_000772, intron 5 of 8) L1M3|LINE|L1 34117 NM_001128925 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 175.333-34 chr20 31459076 31459320 + 0.833333 NA Intergenic AluJb|SINE|Alu 13815 NM_001037500 245937 Hs.381373 NM_001037500 ENSG00000180383 DEFB124 DEFB-24 defensin beta 124 protein-coding 171-43 chr3 99823602 99823958 + 0.833333 NA promoter-TSS (NR_110821) promoter-TSS (NR_110821) 85 NR_110821 101929357 Hs.741615 NR_110821 HP09053 - uncharacterized LOC101929357 ncRNA 190-7 chr10 88335795 88336404 + 0.833333 NA intron (NM_018363, intron 5 of 6) intron (NM_018363, intron 5 of 6) 247219 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 166.667-37 chr3 104300361 104300783 + 0.833333 NA Intergenic L1MA2|LINE|L1 -776456 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 225.833-19 chr5 68549168 68549504 + 0.833333 NA Intergenic Intergenic 256759 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 507.333 chr13 41352671 41353435 + 0.833333 NA intron (NM_001110798, intron 9 of 10) AluSg7|SINE|Alu -41015 NM_001354074 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 191.333-3 chr1 160101186 160101457 + 0.833333 NA Intergenic Intergenic -2493 NM_001206665 93185 Hs.332012 NM_052868 ENSG00000162729 IGSF8 CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL immunoglobulin superfamily member 8 protein-coding 337.667-18 chr9 86433905 86434717 + 0.833333 NA Intergenic Intergenic -79901 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 174.667-37 chr4 1277261 1277546 + 0.833333 NA Intergenic L1MB4|LINE|L1 -12488 NM_001297431 10296 Hs.139896 NM_005882 ENSG00000090316 MAEA EMLP|EMP|GID9|HLC-10|P44EMLP|PIG5 macrophage erythroblast attacher protein-coding 167-29 chr3 189491996 189492228 + 0.833333 NA Intergenic Intergenic -104634 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 226.5-25 chr3 68420424 68420857 + 0.833333 NA intron (NM_001252216, intron 3 of 4) MER20|DNA|hAT-Charlie -79997 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 237.5-21 chr2 13916861 13917258 + 0.833333 NA Intergenic Intergenic 483899 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 210.167-33 chr8 16102467 16102756 + 0.833333 NA Intergenic Intergenic 83661 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 204.833-21 chr5 16888578 16888938 + 0.833333 NA intron (NM_012334, intron 1 of 40) AluJo|SINE|Alu 47530 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 259.833-18 chr8 81635991 81636371 + 0.833333 NA Intergenic AluSx1|SINE|Alu -4904 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 199.833-3 chr1 109111747 109112041 + 0.833333 NA intron (NM_001366200, intron 1 of 4) L2c|LINE|L2 853 NR_158763 127003 Hs.446962 NM_001122961 ENSG00000179902 C1orf194 - chromosome 1 open reading frame 194 protein-coding 195-32 chr4 40827777 40828108 + 0.833333 NA intron (NM_173075, intron 12 of 16) THE1B|LTR|ERVL-MaLR 29213 NM_001166052 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 239.333-32 chr7 139335419 139335838 + 0.833333 NA Intergenic AluSq|SINE|Alu -4731 NM_001244585 51631 Hs.731488 NM_016019 ENSG00000146963 LUC7L2 CGI-59|CGI-74|LUC7B2 LUC7 like 2, pre-mRNA splicing factor protein-coding 181.333-5 chr10 115624578 115624835 + 0.833333 NA intron (NM_207303, intron 26 of 28) MER63A|DNA|hAT-Blackjack 531341 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 234.5-20 chr19 14472165 14472613 + 0.833333 NA TTS (NM_000955) TTS (NM_000955) 2965 NM_000955 5731 Hs.159360 NM_000955 ENSG00000160951 PTGER1 EP1 prostaglandin E receptor 1 protein-coding 277.333-28 chr4 73989361 73989948 + 0.833333 NA Intergenic Intergenic -1464 NM_002704 5473 Hs.2164 NM_002704 ENSG00000163736 PPBP B-TG1|Beta-TG|CTAP-III|CTAP3|CTAPIII|CXCL7|LA-PF4|LDGF|MDGF|NAP-2|PBP|SCYB7|TC1|TC2|TGB|TGB1|THBGB|THBGB1 pro-platelet basic protein protein-coding 197.667-19 chr14 70915674 70916175 + 0.833333 NA intron (NM_014982, intron 1 of 35) L2|LINE|L2 8465 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 263.833-13 chr8 115896850 115897387 + 0.833333 NA Intergenic Intergenic -228143 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 198.167-28 chr6 97919999 97920415 + 0.833333 NA Intergenic Intergenic -104324 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 175.167-9 chr12 46843183 46843473 + 0.833333 NA Intergenic Intergenic -17331 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 188-9 chr12 26062533 26062787 + 0.833333 NA intron (NM_001164746, intron 2 of 4) intron (NM_001164746, intron 2 of 4) 10096 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 213.167-25 chr7 27096253 27096593 + 0.833333 NA promoter-TSS (NM_153620) promoter-TSS (NM_153620) 329 NR_038367 100506311 Hs.445239 NR_038366 ENSG00000233429 HOTAIRM1 HOXA-AS1|HOXA1-AS1|NCRNA00179 HOXA transcript antisense RNA, myeloid-specific 1 ncRNA 173-2 chr1 31531698 31532227 + 0.833333 NA Intergenic ERV24B_Prim-int|LTR|ERV1 13527 NR_027085 284551 Hs.658659 NR_027085 LINC01226 - long intergenic non-protein coding RNA 1226 ncRNA 178.167-28 chr8 126772024 126772297 + 0.833333 NA Intergenic Intergenic -213682 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 213.5-16 chr2 205399113 205399582 + 0.833333 NA intron (NM_205863, intron 18 of 21) AluSx|SINE|Alu -283153 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 195.333-20 chr3 187848623 187849020 + 0.833333 NA Intergenic Zaphod|DNA|hAT-Tip100 -103353 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 307.833-4 chr17 42019125 42019669 + 0.833333 NA promoter-TSS (NM_001144928) promoter-TSS (NM_001144928) -693 NM_017595 28511 Hs.632252 NM_017595 ENSG00000168256 NKIRAS2 KBRAS2|kappaB-Ras2 NFKB inhibitor interacting Ras like 2 protein-coding 229.667-33 chr5 81580222 81580860 + 0.833333 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) 170712 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 196.667-10 chr12 12043841 12044271 + 0.833333 NA Intergenic L1MD1|LINE|L1 -5805 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 215.333-14 chr11 111587413 111587847 + 0.833333 NA Intergenic Intergenic -14819 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 274.333-6 chr10 88581496 88582151 + 0.833333 NA intron (NM_018363, intron 2 of 6) intron (NM_018363, intron 2 of 6) 1495 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 245-14 chr2 68464691 68465112 + 0.833333 NA exon (NM_001024680, exon 3 of 4) exon (NM_001024680, exon 3 of 4) 2393 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 239.333-34 chr8 58682162 58682628 + 0.833333 NA Intergenic L1MB3|LINE|L1 -22542 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 167.333-50 chr6 108114309 108114721 + 0.833333 NA Intergenic Intergenic -9118 NR_145458 100287366 Hs.221513 NR_145458 ENSG00000225174 OSTM1-AS1 - OSTM1 antisense RNA 1 ncRNA 200.5-36 chr5 135553775 135554248 + 0.833333 NA Intergenic Intergenic -18047 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 198.333-28 chr2 160435604 160436102 + 0.833333 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) -27971 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 259.333-11 chr14 21517343 21517698 + 0.833333 NA Intergenic Tigger3c|DNA|TcMar-Tigger -6180 NM_019852 56339 Hs.168799 NM_019852 ENSG00000165819 METTL3 IME4|M6A|MT-A70|Spo8|hMETTL3 methyltransferase like 3 protein-coding 446.5-8 chr7 124601554 124602469 + 0.833333 NA Intergenic Intergenic 163781 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 172.667-35 chr20 6576854 6577249 + 0.833333 NA Intergenic MER5A|DNA|hAT-Charlie 150319 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 222.167-32 chr4 92091027 92091519 + 0.833333 NA Intergenic MER41A|LTR|ERV1 186029 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 188.167-40 chr9 95022725 95023153 + 0.833333 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -42411 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 213.833-6 chr12 110270765 110271180 + 0.833333 NA Intergenic Intergenic -10275 NM_170665 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 189.333-33 chr6 50178241 50178516 + 0.833333 NA Intergenic L1PA16|LINE|L1 -128449 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 277.833-5 chr13 93176800 93177294 + 0.833333 NA Intergenic L1PA15|LINE|L1 -49760 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 237.667-40 chr8 130105114 130105450 + 0.833333 NA intron (NM_018482, intron 24 of 29) MER2|DNA|TcMar-Tigger -20514 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 234.167-12 chr16 87291852 87292152 + 0.833333 NA intron (NR_104667, intron 1 of 4) intron (NR_104667, intron 1 of 4) 450 NR_104667 101928682 Hs.149004 NR_104667 ENSG00000261697 LOC101928682 - uncharacterized LOC101928682 ncRNA 165.5-29 chr2 190398651 190398904 + 0.833333 NA Intergenic L1MC4a|LINE|L1 -9578 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 197-23 chr4 63432512 63433045 + 0.833333 NA Intergenic Intergenic 976672 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 208.667-36 chr5 164182191 164182608 + 0.833333 NA Intergenic Intergenic 285003 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 177 chr1 101759734 101760124 + 0.833333 NA Intergenic L1MEg|LINE|L1 87151 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 199.667-18 chr18 13891387 13891655 + 0.833333 NA intron (NM_001291911, intron 1 of 1) L1ME4b|LINE|L1 24015 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 179.334-7 chr20 22784849 22785394 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -99777 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 278.167-6 chr11 84964559 84965066 + 0.833333 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -41391 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 170.167-12 chr14 47167011 47167443 + 0.833333 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 176019 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 185.5-8 chr11 33717536 33717881 + 0.833333 NA intron (NM_001127223, intron 1 of 2) Cheshire|DNA|hAT-Charlie 5019 NM_001127225 966 Hs.278573 NM_000611 ENSG00000085063 CD59 16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20 CD59 molecule (CD59 blood group) protein-coding 218.333 chr1 84275150 84275517 + 0.833333 NA Intergenic L1MCa|LINE|L1 -23205 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 182.167 chr10 71201028 71201257 + 0.833333 NA Intergenic AluSx|SINE|Alu -11428 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 377.833-2 chr10 83373866 83374717 + 0.833333 NA Intergenic Intergenic 302798 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 187.833-10 chr13 26221567 26221815 + 0.833333 NA promoter-TSS (NM_183044) promoter-TSS (NM_183044) 66 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 250.5-13 chr18 37925736 37926181 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR 268823 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 163.5-40 chr5 172877061 172877437 + 0.833333 NA intron (NM_001031711, intron 1 of 9) L1M5|LINE|L1 -37834 NR_162113 113218510 NR_162113 MIR10523 - microRNA 10523 ncRNA 195.333-26 chr6 169441210 169441523 + 0.833333 NA Intergenic Intergenic -187252 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 264-31 chr8 74787321 74787731 + 0.833333 NA Intergenic Intergenic -37008 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 213.333-4 chr10 116653324 116653741 + 0.833333 NA Intergenic L1PA16|LINE|L1 16434 NM_144661 143379 Hs.121347 NM_144661 ENSG00000165863 C10orf82 - chromosome 10 open reading frame 82 protein-coding 205.167-8 chr19 42622876 42623184 + 0.833333 NA intron (NR_073180, intron 2 of 2) L1MB3|LINE|L1 -28106 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 270.167-7 chr13 30580665 30581234 + 0.833333 NA intron (NM_001370340, intron 1 of 4) AluJb|SINE|Alu 36638 NM_001370340 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 192.833-12 chr17 43073683 43074062 + 0.833333 NA intron (NR_027676, intron 14 of 22) AluSx|SINE|Alu 48641 NM_005440 8153 Hs.603111 NM_005440 ENSG00000108830 RND2 ARHN|RHO7|RhoN Rho family GTPase 2 protein-coding 180.167-10 chr16 88557902 88558244 + 0.833333 NA Intergenic LFSINE_Vert|SINE|tRNA 3910 NR_146877 400555 Hs.120392 NM_001001682 ZC3H18-AS1 C16orf85|LINC00859 ZC3H18 antisense RNA 1 (head to head) ncRNA 282.5-11 chr3 105369214 105369917 + 0.833333 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 2656 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 333-6 chr17 59107178 59107864 + 0.833333 NA promoter-TSS (NM_015294) promoter-TSS (NM_015294) -641 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 175.333-32 chr20 9201484 9201848 + 0.833333 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -15724 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 203.833-11 chr19 14856731 14856975 + 0.833333 NA Intergenic L1P4|LINE|L1 -14976 NM_001005190 390892 Hs.553776 NM_001005190 ENSG00000127515 OR7A10 BC85395_3|OR19-18 olfactory receptor family 7 subfamily A member 10 protein-coding 181.5-13 chr13 41905452 41905862 + 0.833333 NA intron (NM_001009814, intron 4 of 25) L1MC4|LINE|L1 55428 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 251.667-38 chr9 10268798 10269203 + 0.833333 NA intron (NM_002839, intron 3 of 45) MER20|DNA|hAT-Charlie 344002 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 190.167-26 chr8 131261623 131262091 + 0.833333 NA Intergenic LTR16E1|LTR|ERVL -220948 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 312.167-4 chr20 12414088 12414720 + 0.833333 NA Intergenic Intergenic 496511 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 384.5-11 chr7 22854099 22854721 + 0.833333 NA intron (NR_146320, intron 1 of 4) CpG 170 NR_146320 109729180 Hs.553139 NR_146320 SNHG26 - small nucleolar RNA host gene 26 ncRNA 163.5-21 chr19 28681639 28682067 + 0.833333 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 45841 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 197-40 chr8 142623975 142624252 + 0.833333 NA Intergenic Intergenic -9634 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 200.667-17 chr14 84005322 84005775 + 0.833333 NA Intergenic Intergenic -1266384 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 238.333-8 chr11 26331849 26332249 + 0.833333 NA promoter-TSS (NM_031418) promoter-TSS (NM_031418) -81 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 169-43 chr6 9515078 9515419 + 0.833333 NA Intergenic Intergenic 863039 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 205.667-20 chr2 216392432 216392712 + 0.833333 NA Intergenic UCON105|Unknown|Unknown -19842 NM_014140 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 329.5-3 chr12 110891699 110892393 + 0.833333 NA intron (NM_152591, intron 8 of 11) MER5A|DNA|hAT-Charlie 28554 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 344.667-3 chr11 4668150 4668692 + 0.833333 NA Intergenic L1MD1|LINE|L1 24439 NM_152430 143503 Hs.470038 NM_152430 ENSG00000180785 OR51E1 D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 olfactory receptor family 51 subfamily E member 1 protein-coding 189.667-47 chr6 121348580 121348975 + 0.833333 NA Intergenic Intergenic -14048 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 190-23 chr16 11877026 11877383 + 0.833333 NA intron (NM_002094, intron 12 of 14) intron (NM_002094, intron 12 of 14) -25662 NM_015659 26156 Hs.401842 NM_015659 ENSG00000171490 RSL1D1 CSIG|L12|PBK1|UTP30 ribosomal L1 domain containing 1 protein-coding 171-45 chr3 131354456 131354737 + 0.833333 NA intron (NR_038976, intron 2 of 3) intron (NR_038976, intron 2 of 3) -7249 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 191.5-43 chr6 86191737 86192292 + 0.833333 NA Intergenic MIRb|SINE|MIR -513281 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 340.167-5 chr19 48205966 48206608 + 0.833333 NA intron (NM_001351787, intron 10 of 10) intron (NM_001351787, intron 10 of 10) 34776 NR_033679 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 195-11 chr12 123975186 123975611 + 0.833333 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 2183 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 211.333-41 chr6 43507611 43507885 + 0.833333 NA intron (NM_001271882, intron 4 of 5) intron (NM_001271882, intron 4 of 5) 2595 NM_001012974 221424 Hs.445552 NM_001012974 ENSG00000204052 LRRC73 C6orf154 leucine rich repeat containing 73 protein-coding 232.5-12 chr2 41408950 41409571 + 0.833333 NA Intergenic HAL1|LINE|L1 -468295 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 224.5-38 chr6 143654057 143654341 + 0.833333 NA intron (NM_014721, intron 1 of 12) L1MB8|LINE|L1 -23766 NM_001100165 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 216.5 chr1 43206555 43206996 + 0.833333 NA exon (NM_001167965, exon 10 of 11) exon (NM_001167965, exon 10 of 11) -34205 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 265-20 chr5 8862481 8862826 + 0.833333 NA intron (NR_109932, intron 1 of 2) L1M5|LINE|L1 22921 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 239.833-14 chr6 19133463 19134247 + 0.833333 NA intron (NR_110860, intron 5 of 10) intron (NR_110860, intron 5 of 10) 46625 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 247.5-10 chr14 41193245 41193628 + 0.833333 NA Intergenic L1MA3|LINE|L1 238725 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 230.833 chr1 35313573 35313967 + 0.833333 NA intron (NM_001350140, intron 2 of 27) intron (NM_001350140, intron 2 of 27) 45061 NM_005095 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 173.667-27 chr18 37343448 37343858 + 0.833333 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) 69193 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 255.333-26 chr7 157327909 157328383 + 0.833333 NA Intergenic AluSc8|SINE|Alu -8858 NM_001363676 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 214.667-33 chr5 30546234 30546640 + 0.833333 NA Intergenic L1ME3A|LINE|L1 -647249 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 195.833-24 chr7 97108054 97108434 + 0.833333 NA Intergenic Intergenic -8349 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 204-14 chr12 124914120 124914371 + 0.833333 NA intron (NM_021009, intron 1 of 1) CpG 405 NM_021009 7316 Hs.520348 NM_021009 ENSG00000150991 UBC HMG20 ubiquitin C protein-coding 201.667-5 chr11 76853161 76853478 + 0.833333 NA Intergenic AluJr4|SINE|Alu -7599 NM_001300955 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 257.5-9 chr12 71439695 71440288 + 0.833333 NA non-coding (NR_110596, exon 1 of 20) non-coding (NR_110596, exon 1 of 20) 193 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 187-12 chr15 56019289 56019675 + 0.833333 NA Intergenic MLT2A2|LTR|ERVL -25870 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 271.333-8 chr13 59176545 59176903 + 0.833333 NA Intergenic Intergenic -835994 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 199 chr1 77979239 77979584 + 0.833333 NA promoter-TSS (NR_146539) promoter-TSS (NR_146539) -206 NM_001303433 8880 Hs.567380 NM_003902 ENSG00000162613 FUBP1 FBP|FUBP|hDH V far upstream element binding protein 1 protein-coding 202.333-5 chr1 226567383 226567683 + 0.833333 NA intron (NM_001003665, intron 1 of 3) intron (NM_001003665, intron 1 of 3) 18769 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 165.167-30 chr4 61547595 61547793 + 0.833333 NA intron (NM_001371343, intron 4 of 23) L1PA15|LINE|L1 345522 NM_001371342 204-16 chr15 26898004 26898452 + 0.833333 NA intron (NM_001165037, intron 6 of 10) intron (NM_001165037, intron 6 of 10) 31102 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 190.667-50 chr6 56906708 56906964 + 0.833333 NA intron (NM_001144769, intron 2 of 96) LTR9|LTR|ERV1 47994 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 222.333-25 chr5 147901021 147901340 + 0.833333 NA intron (NM_206966, intron 2 of 3) intron (NM_206966, intron 2 of 3) 5358 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 375.667-15 chrX 81172123 81172786 + 0.833333 NA intron (NM_030763, intron 1 of 6) L1MC5a|LINE|L1 29459 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 211.667-8 chr12 60868066 60868417 + 0.833333 NA Intergenic Intergenic 1178871 NM_004731 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 168.167-35 chr8 71121797 71122105 + 0.833333 NA Intergenic L1MC|LINE|L1 234755 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 203.333-48 chr5 16023354 16023772 + 0.833333 NA Intergenic Intergenic 88381 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 179.5-54 chr9 97708233 97708545 + 0.833333 NA intron (NR_147055, intron 10 of 10) THE1B|LTR|ERVL-MaLR -10980 NR_149091 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 224.167-26 chr5 114364110 114364644 + 0.833333 NA intron (NM_001278204, intron 2 of 6) intron (NM_001278204, intron 2 of 6) 2058 NM_001278204 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 191.833-7 chr14 22324216 22324672 + 0.833333 NA Intergenic Intergenic 108309 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 185.333-14 chr12 108832614 108832891 + 0.833333 NA intron (NM_018984, intron 2 of 14) intron (NM_018984, intron 2 of 14) 4254 NR_030350 693204 NR_030350 ENSG00000207622 MIR619 MIRN619|hsa-mir-619 microRNA 619 ncRNA 194-31 chr4 37144351 37144641 + 0.833333 NA Intergenic L1MA1|LINE|L1 97495 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 179-17 chr16 74565047 74565496 + 0.833333 NA intron (NR_027264, intron 1 of 26) AluSz|SINE|Alu 41843 NR_027264 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 198.5-28 chr20 52029823 52030294 + 0.833333 NA Intergenic AluJr4|SINE|Alu 75426 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 183.333-18 chr12 117016179 117016526 + 0.833333 NA intron (NM_153348, intron 8 of 10) L1MB8|LINE|L1 -29015 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 182.167-2 chr11 81220877 81221229 + 0.833333 NA Intergenic Intergenic -458250 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 210.5-21 chr2 125406037 125406553 + 0.833333 NA Intergenic Intergenic 711690 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 166-12 chr10 99393056 99393314 + 0.833333 NA non-coding (NR_144311, exon 11 of 11) non-coding (NR_144311, exon 11 of 11) 37439 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 252-14 chr11 26744059 26744447 + 0.833333 NA Intergenic (TTATATA)n|Simple_repeat|Simple_repeat -22193 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 230.5-20 chr22 49834531 49835016 + 0.833333 NA Intergenic LTR37B|LTR|ERV1 -6900 NM_001304808 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 184.167-13 chr16 3088461 3088754 + 0.833333 NA TTS (NM_001282416) TTS (NM_001282416) 10687 NM_032805 84891 Hs.334515 NM_032805 ENSG00000130182 ZSCAN10 ZFP206|ZNF206 zinc finger and SCAN domain containing 10 protein-coding 244.333-16 chr2 124803260 124803645 + 0.833333 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 778165 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 192-39 chr7 50465465 50465936 + 0.833333 NA intron (NM_001242888, intron 11 of 12) L1MB8|LINE|L1 -15294 NM_001287495 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 234.833-10 chr15 71905912 71906493 + 0.833333 NA intron (NM_006901, intron 19 of 41) L1MEf|LINE|L1 95648 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 164.667-17 chr15 63593545 63594002 + 0.833333 NA non-coding (NR_046341, exon 16 of 16) non-coding (NR_046341, exon 16 of 16) -3614 NM_203373 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 186.833-21 chr7 36261686 36262115 + 0.833333 NA intron (NM_030636, intron 3 of 7) intron (NM_030636, intron 3 of 7) 105340 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 328-13 chr8 86735693 86736184 + 0.833333 NA intron (NM_019098, intron 2 of 17) intron (NM_019098, intron 2 of 17) 7737 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 318.5-19 chr8 125089027 125089520 + 0.833333 NA intron (NM_014846, intron 1 of 28) intron (NM_014846, intron 1 of 28) 2519 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 199.5-30 chr22 39310114 39310613 + 0.833333 NA Intergenic AluJb|SINE|Alu 3548 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 174.833-13 chr2 70411369 70411967 + 0.833333 NA Intergenic LTR16B1|LTR|ERVL 69972 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 184.833-29 chr7 107216652 107216958 + 0.833333 NA intron (NM_181733, intron 18 of 20) L1MA7|LINE|L1 47802 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 171.333-50 chr7 147994560 147994918 + 0.833333 NA intron (NM_014141, intron 14 of 22) THE1B|LTR|ERVL-MaLR 323060 NR_133930 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 198.667-10 chr14 50668239 50668645 + 0.833333 NA promoter-TSS (NM_021818) promoter-TSS (NM_021818) -136 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 207-27 chr6 112087065 112087633 + 0.833333 NA promoter-TSS (NM_001033564) promoter-TSS (NM_001033564) 133 NM_016262 51175 Hs.34851 NM_016262 ENSG00000074935 TUBE1 TUBE|dJ142L7.2 tubulin epsilon 1 protein-coding 294.667-21 chr5 77828267 77828962 + 0.833333 NA Intergenic L1MB8|LINE|L1 -52253 NM_004607 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 252-3 chr1 89608273 89608632 + 0.833333 NA Intergenic MLT1A|LTR|ERVL-MaLR 24442 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 LRRC8C-DT - LRRC8C divergent transcript ncRNA 226.167-27 chr9 35113984 35114466 + 0.833333 NA intron (NM_025182, intron 1 of 8) intron (NM_025182, intron 1 of 8) 1637 NR_134455 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 170-51 chr7 42679909 42680260 + 0.833333 NA intron (NR_110833, intron 1 of 2) L1MA5A|LINE|L1 26363 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 177.5-29 chr2 102428655 102429174 + 0.833333 NA intron (NM_003853, intron 5 of 11) L1MA4|LINE|L1 -3375 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 201.333-22 chr2 15381556 15381944 + 0.833333 NA intron (NR_052013, intron 29 of 50) intron (NR_052013, intron 29 of 50) 179584 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 193-6 chr10 82500707 82500997 + 0.833333 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -267932 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 317.167-7 chr14 46250524 46251025 + 0.833333 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 186615 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 211.833-10 chr19 50580924 50581335 + 0.833333 NA Intergenic MIRb|SINE|MIR -12694 NM_001080457 94030 Hs.120873 NM_001080457 ENSG00000131409 LRRC4B HSM|LRIG4|NGL-3 leucine rich repeat containing 4B protein-coding 196.5-39 chr7 30501414 30501671 + 0.833333 NA intron (NM_001199816, intron 1 of 2) intron (NM_001199816, intron 1 of 2) 3287 NR_037669 79017 Hs.530024 NM_024051 ENSG00000006625 GGCT C7orf24|CRF21|GCTG|GGC gamma-glutamylcyclotransferase protein-coding 174.667-21 chr19 14426501 14426744 + 0.833333 NA Intergenic AluSg|SINE|Alu -6684 NM_002741 5585 Hs.466044 NM_002741 ENSG00000123143 PKN1 DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1 protein kinase N1 protein-coding 214.333-35 chr5 27126064 27126352 + 0.833333 NA Intergenic MLT1C|LTR|ERVL-MaLR -87622 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 195.167-17 chr16 12188425 12188831 + 0.833333 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 211894 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 189.667-19 chr15 56042337 56042771 + 0.833333 NA Intergenic HAL1|LINE|L1 -48942 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 257.333-14 chr20 47127457 47127896 + 0.833333 NA intron (NM_172110, intron 9 of 13) intron (NM_172110, intron 9 of 13) -39291 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 213-4 chr10 52050160 52050549 + 0.833333 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) 263774 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 224.667-40 chr6 50469195 50469597 + 0.833333 NA Intergenic Intergenic -244148 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 165.5-7 chr11 18239259 18239551 + 0.833333 NA 3' UTR (NM_001127380, exon 4 of 4) 3' UTR (NM_001127380, exon 4 of 4) -2603 NM_006512 6291 Hs.1955 NM_006512 ENSG00000148965 SAA4 C-SAA|CSAA serum amyloid A4, constitutive protein-coding 339.833-3 chr14 35857524 35858148 + 0.833333 NA intron (NM_032352, intron 4 of 9) HAL1|LINE|L1 31498 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 229.667-24 chr3 114627576 114627974 + 0.833333 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -2830 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 165.167-46 chr7 155533626 155534070 + 0.833333 NA promoter-TSS (NM_001103176) promoter-TSS (NM_001103176) 14 NM_001103176 285888 Hs.146751 NM_001103176 ENSG00000146910 CNPY1 - canopy FGF signaling regulator 1 protein-coding 187.833-16 chr3 16549063 16549405 + 0.833333 NA Intergenic L1M5|LINE|L1 12916 NR_103843 100996597 Hs.599432 NR_103843 ENSG00000233570 LINC00690 - long intergenic non-protein coding RNA 690 ncRNA 180.833-20 chr5 111112208 111112560 + 0.833333 NA intron (NM_139281, intron 15 of 22) intron (NM_139281, intron 15 of 22) 20212 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 180.833-28 chr9 95875698 95876109 + 0.833333 NA promoter-TSS (NR_023390) promoter-TSS (NR_023390) 74 NR_023389 100128782 Hs.494549 NR_023389 ENSG00000175611 LINC00476 C9orf130|NAG11|NAG12 long intergenic non-protein coding RNA 476 ncRNA 167.667-5 chr11 78011497 78011831 + 0.833333 NA Intergenic Intergenic 11612 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 171.5-22 chr17 63792893 63793212 + 0.833333 NA intron (NM_203499, intron 3 of 17) (TTCTTT)n|Simple_repeat|Simple_repeat 18863 NM_007372 11325 Hs.702010 NM_007372 ENSG00000198231 DDX42 DDX42P|RHELP|RNAHP|SF3B8|SF3b125 DEAD-box helicase 42 protein-coding 206.833-15 chr3 198034840 198035344 + 0.833333 NA intron (NR_026786, intron 15 of 16) AluJb|SINE|Alu 4375 NR_046669 100873947 Hs.637166 NR_046669 ENSG00000232832 LMLN-AS1 - LMLN antisense RNA 1 ncRNA 260.333 chr11 26858156 26858543 + 0.833333 NA Intergenic Intergenic -135763 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 237.5-42 chr9 12281931 12282255 + 0.833333 NA Intergenic MER92-int|LTR|ERV1 -411292 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 171.167-5 chr1 206540010 206540430 + 0.833333 NA intron (NM_182664, intron 2 of 4) intron (NM_182664, intron 2 of 4) -16944 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 249.833 chr10 29992377 29992734 + 0.833333 NA Intergenic Intergenic 67031 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 168.5-34 chr4 30171032 30171436 + 0.833333 NA Intergenic Intergenic -549135 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 169.833-30 chr3 42148952 42149368 + 0.833333 NA promoter-TSS (NM_001265610) promoter-TSS (NM_001265610) -75 NM_001265610 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 302.833-6 chr17 60799882 60800391 + 0.833333 NA intron (NM_001330413, intron 6 of 25) L1MD2|LINE|L1 122285 NM_001353146 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 308.167-7 chr19 27775782 27776443 + 0.833333 NA Intergenic Intergenic -17319 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 167.833-41 chr6 76267960 76268318 + 0.833333 NA Intergenic Intergenic -195461 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 234.333-9 chr12 100266559 100267043 + 0.833333 NA promoter-TSS (NM_001317784) promoter-TSS (NM_001317784) 278 NM_152317 120863 Hs.653118 NM_152317 ENSG00000166153 DEPDC4 DEP.4 DEP domain containing 4 protein-coding 211.833-13 chr2 181100864 181101216 + 0.833333 NA Intergenic L1MC1|LINE|L1 -22797 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 183.167-27 chr5 7110825 7111239 + 0.833333 NA Intergenic L1MC1|LINE|L1 158322 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 297.167-4 chr16 3364242 3364792 + 0.833333 NA Intergenic AluJr|SINE|Alu 8151 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 189.833-15 chr6 149833885 149834355 + 0.833333 NA intron (NM_032832, intron 5 of 6) L1PA11|LINE|L1 -29378 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 246.333-15 chr12 115832115 115832627 + 0.833333 NA Intergenic L1MC2|LINE|L1 316283 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 176.833-25 chr22 22119100 22119359 + 0.833333 NA Intergenic Intergenic -75295 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 255.833-21 chrX 45749570 45749983 + 0.833333 NA Intergenic Intergenic -2652 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 167-16 chr2 31767549 31767779 + 0.833333 NA Intergenic LTR37A|LTR|ERV1 36316 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 243.667-19 chr2 9240558 9240897 + 0.833333 NA intron (NM_003887, intron 1 of 27) MER44C|DNA|TcMar-Tigger 33915 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 170.667-13 chr16 71692607 71693026 + 0.833333 NA intron (NM_015020, intron 3 of 18) MER2|DNA|TcMar-Tigger 5885 NR_033337 100379141 Hs.725116 NR_033337 ENSG00000263666 SNORA70D U70D small nucleolar RNA, H/ACA box 70D snoRNA 237.167-13 chr2 210834833 210835504 + 0.833333 NA Intergenic L1MEg|LINE|L1 217597 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 251.667-2 chr1 94389282 94389853 + 0.833333 NA Intergenic MER9a3|LTR|ERVK -28810 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 299.5 chr1 4982401 4982988 + 0.833333 NA Intergenic Intergenic 328085 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 332-4 chr11 62671259 62671861 + 0.833333 NA promoter-TSS (NM_001085372) promoter-TSS (NM_001085372) -113 NM_001085372 790955 Hs.569009 NM_001085372 ENSG00000204922 UQCC3 C11orf83|CCDS41658.1|MC3DN9|UNQ655 ubiquinol-cytochrome c reductase complex assembly factor 3 protein-coding 175-16 chr14 30872877 30873323 + 0.833333 NA Intergenic Intergenic -1435 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 172.667-31 chr2 79849346 79849708 + 0.833333 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 17056 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 165.333-44 chr7 38677209 38677520 + 0.833333 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 9725 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 208.5-38 chr6 40499506 40499867 + 0.833333 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 87678 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 229.667-39 chr6 48734540 48735136 + 0.833333 NA Intergenic Tigger6a|DNA|TcMar-Tigger -666149 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 209.833 chr1 43831024 43831417 + 0.833333 NA intron (NM_001363573, intron 5 of 10) intron (NM_001363573, intron 5 of 10) -7402 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 175.167-27 chr3 17575574 17575956 + 0.833333 NA intron (NM_001349089, intron 1 of 20) intron (NM_001349089, intron 1 of 20) 124255 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 216-6 chr11 46650093 46650584 + 0.833333 NA intron (NM_001346358, intron 6 of 16) intron (NM_001346358, intron 6 of 16) 33062 NM_001346318 9776 Hs.127403 NM_014741 ENSG00000175224 ATG13 KIAA0652|PARATARG8 autophagy related 13 protein-coding 217.667-17 chr12 126750265 126750651 + 0.833333 NA intron (NR_033878, intron 1 of 4) intron (NR_033878, intron 1 of 4) 13451 NR_038256 100507206 Hs.662298 NR_038256 LINC00943 - long intergenic non-protein coding RNA 943 ncRNA 217.167-22 chr6 40673416 40673965 + 0.833333 NA Intergenic Intergenic -86326 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 274 chr1 65956564 65957295 + 0.833333 NA intron (NM_002600, intron 3 of 16) L1M4|LINE|L1 -35687 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 173.667-49 chr8 123396613 123396927 + 0.833333 NA promoter-TSS (NM_014109) promoter-TSS (NM_014109) -323 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 244.833 chr10 110530225 110530723 + 0.833333 NA Intergenic CpG 32567 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 201.5-16 chr15 91688224 91688545 + 0.833333 NA Intergenic L1MB8|LINE|L1 -165324 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 180.667-10 chr10 126136987 126137342 + 0.833333 NA intron (NM_001288974, intron 4 of 18) L1M5|LINE|L1 -163891 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 193.5-13 chr14 83602683 83603199 + 0.833333 NA Intergenic L1PA10|LINE|L1 960309 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 198-7 chr12 24855424 24855941 + 0.833333 NA intron (NM_001178091, intron 4 of 9) LTR39|LTR|ERV1 46540 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 226.833-15 chr5 14271177 14271529 + 0.833333 NA intron (NM_007118, intron 2 of 56) intron (NM_007118, intron 2 of 56) 128011 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 184.667-27 chr2 4676676 4676918 + 0.833333 NA Intergenic MIR|SINE|MIR -20575 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 227.667-20 chr19 37906767 37907207 + 0.833333 NA promoter-TSS (NM_001291088) promoter-TSS (NM_001291088) -221 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 195.167-19 chr17 31928681 31929027 + 0.833333 NA Intergenic AluSc|SINE|Alu -8153 NM_015355 23512 Hs.462732 NM_015355 ENSG00000178691 SUZ12 CHET9|JJAZ1 SUZ12 polycomb repressive complex 2 subunit protein-coding 205.333-31 chr3 6681700 6682027 + 0.833333 NA intron (NR_110123, intron 2 of 3) intron (NR_110123, intron 2 of 3) 123586 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 174.667-47 chr6 73969678 73969994 + 0.833333 NA Intergenic Intergenic -99615 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 196.167-18 chr16 61788338 61788633 + 0.833333 NA intron (NM_001796, intron 8 of 11) intron (NM_001796, intron 8 of 11) 247953 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 289.333-8 chr10 111009118 111009575 + 0.833333 NA non-coding (NR_136749, exon 6 of 8) non-coding (NR_136749, exon 6 of 8) 20420 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 322.667-9 chr14 69134409 69134940 + 0.833333 NA intron (NM_003861, intron 1 of 8) intron (NM_003861, intron 1 of 8) 17925 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 172.167-33 chrX 63033790 63034070 + 0.833333 NA Intergenic L1MA6|LINE|L1 317402 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 185.333-20 chr18 10311030 10311306 + 0.833333 NA Intergenic Intergenic 103202 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 242.167-29 chr8 100305416 100305821 + 0.833333 NA intron (NM_001280539, intron 2 of 10) intron (NM_001280539, intron 2 of 10) -2359 NM_015435 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 187.833-18 chr4 25173549 25173817 + 0.833333 NA intron (NR_037934, intron 1 of 1) intron (NR_037934, intron 1 of 1) 13011 NR_037934 285540 Hs.732278 NR_037934 SEPSECS-AS1 - SEPSECS antisense RNA 1 (head to head) ncRNA 252.333-3 chr1 227449669 227450162 + 0.833333 NA Intergenic MER50|LTR|ERV1 -113641 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 226.5-34 chr5 135384697 135385122 + 0.833333 NA intron (NM_138609, intron 2 of 8) MIR|SINE|MIR 14329 NM_001040158 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 173.667-48 chr8 120703809 120704092 + 0.833333 NA intron (NM_021021, intron 1 of 6) MIR|SINE|MIR -57303 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 315.667-6 chr11 133484965 133485435 + 0.833333 NA intron (NM_001012393, intron 1 of 7) L1M5|LINE|L1 47301 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 195.167-39 chr9 83307032 83307384 + 0.833333 NA intron (NM_001244960, intron 10 of 13) intron (NM_001244960, intron 10 of 13) 24753 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 222.333-5 chr12 113700810 113701323 + 0.833333 NA Intergenic MIR|SINE|MIR 72617 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 212.167-7 chr13 25509602 25509968 + 0.833333 NA intron (NM_016529, intron 2 of 36) intron (NM_016529, intron 2 of 36) 41011 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 173.167-5 chr10 34120793 34121025 + 0.833333 NA intron (NM_001184789, intron 21 of 22) AluJo|SINE|Alu -348229 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 196.667-22 chr17_GL000205v2_random 66566 67029 + 0.833333 NA Intergenic L1P1|LINE|L1 -8831 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 164.833-8 chr16 71900375 71900680 + 0.833333 NA intron (NM_001270979, intron 1 of 5) intron (NM_001270979, intron 1 of 5) 4996 NM_001270977 9798 Hs.232194 NM_014761 ENSG00000182149 IST1 CHMP8|OLC1 IST1 factor associated with ESCRT-III protein-coding 280.167-10 chr3 98899526 98900034 + 0.833333 NA intron (NM_080927, intron 1 of 15) MIR|SINE|MIR 1915 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 205-22 chr4 57101790 57102145 + 0.833333 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -7795 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 163.833-4 chr10 61760890 61761104 + 0.833333 NA exon (NM_001366908, exon 7 of 8) exon (NM_001366908, exon 7 of 8) 98036 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 412.834-6 chr3 47824475 47825406 + 0.833333 NA intron (NM_014966, intron 5 of 22) CpG 21802 NM_138615 22907 Hs.517948 NM_014966 ENSG00000132153 DHX30 DDX30|NEDMIAL|RETCOR DExH-box helicase 30 protein-coding 180.667-20 chr15 88673844 88674184 + 0.833333 NA Intergenic HAL1|LINE|L1 34998 NM_002201 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 345.334-3 chr10 112740815 112741582 + 0.833333 NA intron (NM_001365713, intron 8 of 8) AluSz|SINE|Alu -82298 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 203.167-18 chr20 46174335 46174751 + 0.833333 NA exon (NM_021248, exon 12 of 12) exon (NM_021248, exon 12 of 12) 56229 NR_126502 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 235-27 chr6 27813387 27813717 + 0.833333 NA TTS (NM_021066) TTS (NM_021066) 1188 NM_021066 8331 Hs.406691 NM_021066 ENSG00000276368 HIST1H2AJ H2A/E|H2AFE|dJ160A22.4 histone cluster 1 H2A family member j protein-coding 167.167-7 chr10 31332956 31333235 + 0.833333 NA intron (NM_001323675, intron 1 of 6) intron (NM_001323675, intron 1 of 6) 11435 NM_001323672 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 255.667-8 chr19 33997953 33998403 + 0.833333 NA Intergenic L1ME1|LINE|L1 -174326 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 179.167-20 chr4 112797678 112798112 + 0.833333 NA intron (NM_001354269, intron 1 of 43) intron (NM_001354269, intron 1 of 43) -20102 NM_001354254 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 164.333-21 chr14 96600657 96601075 + 0.833333 NA Intergenic Intergenic 98001 NM_001293628 10914 Hs.253726 NM_032632 ENSG00000090060 PAPOLA PAP|PAP-alpha poly(A) polymerase alpha protein-coding 228.5-34 chr8 109326450 109326934 + 0.833333 NA intron (NM_032869, intron 1 of 9) intron (NM_032869, intron 1 of 9) 3241 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 165.167-21 chr2 133341596 133341866 + 0.833333 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 75536 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 185-27 chr19 42528931 42529424 + 0.833333 NA promoter-TSS (NM_001184816) promoter-TSS (NM_001184816) -696 NM_001184813 634 Hs.512682 NM_001712 ENSG00000079385 CEACAM1 BGP|BGP1|BGPI carcinoembryonic antigen related cell adhesion molecule 1 protein-coding 345-2 chr11 39925003 39925641 + 0.833333 NA Intergenic THE1C|LTR|ERVL-MaLR 367808 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 191-18 chr15 59181876 59182247 + 0.833333 NA intron (NM_004998, intron 18 of 27) intron (NM_004998, intron 18 of 27) -10799 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 186.167-11 chr18 10952954 10953341 + 0.833333 NA intron (NM_022068, intron 3 of 51) L1ME1|LINE|L1 -193498 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 261.667-19 chr20 60518373 60518803 + 0.833333 NA Intergenic Intergenic 40477 NR_039758 100616362 NR_039758 ENSG00000266140 MIR4533 - microRNA 4533 ncRNA 183.333-27 chr15 39146120 39146405 + 0.833333 NA Intergenic Intergenic -104407 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 246.833-3 chr12 113952068 113952491 + 0.833333 NA intron (NM_001146698, intron 8 of 24) intron (NM_001146698, intron 8 of 24) 14046 NM_001146698 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 198.5-23 chr2 101806502 101806846 + 0.833333 NA intron (NM_145686, intron 3 of 30) AluSx4|SINE|Alu 108967 NM_004834 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 338-12 chr7 148650209 148651162 + 0.833333 NA Intergenic Intergenic -47071 NM_001370660 8454 Hs.146806 NM_003592 ENSG00000055130 CUL1 - cullin 1 protein-coding 226.167-26 chr9 34895878 34896333 + 0.833333 NA promoter-TSS (NM_001309426) promoter-TSS (NM_001309426) -341 NM_001309427 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 175.5-38 chr4 150799009 150799441 + 0.833333 NA intron (NM_001367550, intron 33 of 56) intron (NM_001367550, intron 33 of 56) 216042 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 231.167-11 chr13 114243700 114243995 + 0.833333 NA promoter-TSS (NR_049839) promoter-TSS (NR_049839) -658 NR_049839 100847035 NR_049839 ENSG00000264539 MIR548AR - microRNA 548ar ncRNA 220.167-16 chr16 6371724 6372018 + 0.833333 NA intron (NM_018723, intron 2 of 15) L2c|LINE|L2 352168 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 175-13 chr12 113050701 113051069 + 0.833333 NA Intergenic AluJo|SINE|Alu -6972 NM_004416 1840 Hs.372152 NM_004416 ENSG00000135144 DTX1 RNF140|hDx-1 deltex E3 ubiquitin ligase 1 protein-coding 252.333-4 chr1 234617238 234617694 + 0.833333 NA Intergenic Intergenic -7941 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 CVID14 interferon regulatory factor 2 binding protein 2 protein-coding 246-7 chr12 122400689 122401028 + 0.833333 NA TTS (NR_045382) TTS (NR_045382) 5316 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 320.666-2 chr1 50266504 50267137 + 0.833333 NA Intergenic MIRc|SINE|MIR 156623 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 240.167-20 chr6 84227674 84228196 + 0.833333 NA promoter-TSS (NM_014895) promoter-TSS (NM_014895) -292 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 313.167-10 chr3 126389372 126389986 + 0.833333 NA Intergenic Intergenic 5119 NR_103788 100506907 Hs.369473 NR_103787 ENSG00000249833 CCDC37-DT CCDC37-AS1 CCDC37 divergent transcript ncRNA 182.833-13 chr14 76547651 76548000 + 0.833333 NA Intergenic G-rich|Low_complexity|Low_complexity 176478 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 180.5-40 chr7 14642928 14643491 + 0.833333 NA intron (NM_001350722, intron 13 of 25) L1MA5|LINE|L1 198241 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 311-23 chrX 74558628 74559227 + 0.833333 NA Intergenic LTR8A|LTR|ERV1 55697 NM_183353 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 208.5-21 chr2 132952532 132952815 + 0.833333 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) 37116 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 195-17 chr15 92810972 92811366 + 0.833333 NA Intergenic Intergenic 15685 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 238.833-8 chr15 71691374 71691801 + 0.833333 NA promoter-TSS (NR_120346) promoter-TSS (NR_120346) -48 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 243-23 chr8 102677652 102678123 + 0.833333 NA intron (NR_160672, intron 3 of 4) MER96|DNA|hAT-Tip100 21639 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 193.5-16 chr15 84768330 84768662 + 0.833333 NA intron (NM_014630, intron 2 of 10) AluSz|SINE|Alu 19904 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 250.5-18 chr3 126192147 126192799 + 0.833333 NA intron (NR_046383, intron 1 of 1) intron (NR_046383, intron 1 of 1) -11287 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 180.833-3 chr10 54798345 54798635 + 0.833333 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 2741 NM_033056 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 261.667-26 chr7 80446528 80446888 + 0.833333 NA Intergenic Intergenic 65356 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 216.5-47 chr8 131417287 131417590 + 0.833333 NA Intergenic Intergenic -376529 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 216.333-10 chr11 46732389 46732868 + 0.833333 NA intron (NM_000506, intron 12 of 13) AluSq2|SINE|Alu 13415 NM_001311257 2147 Hs.655207 NM_000506 ENSG00000180210 F2 PT|RPRGL2|THPH1 coagulation factor II, thrombin protein-coding 330.167 chr1 38873306 38873788 + 0.833333 NA promoter-TSS (NM_012333) promoter-TSS (NM_012333) 146 NR_135048 105378663 Hs.585419 NR_135048 ENSG00000228436 LOC105378663 - uncharacterized LOC105378663 ncRNA 285.333-10 chr6 72369941 72370423 + 0.833333 NA intron (NM_001168411, intron 1 of 5) intron (NM_001168411, intron 1 of 5) 3436 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 215-8 chr11 114670785 114671265 + 0.833333 NA Intergenic L1MA9|LINE|L1 -7502 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 221.833-15 chr3 94161020 94161415 + 0.833333 NA Intergenic Charlie4a|DNA|hAT-Charlie 98156 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 228.333-21 chr4 95768573 95768976 + 0.833333 NA Intergenic L1MA3|LINE|L1 -71319 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 232.167-9 chr14 73468798 73469265 + 0.833333 NA Intergenic Intergenic -5389 NR_135251 101928143 Hs.654609 NR_135251 ENSG00000284930 LOC101928143 - uncharacterized LOC101928143 ncRNA 313.833-8 chr8 89640910 89641448 + 0.833333 NA Intergenic L1M2|LINE|L1 116532 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 202-15 chr19 28231877 28232214 + 0.833333 NA Intergenic MER102b|DNA|hAT-Charlie -374643 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 182.833-21 chr2 118868140 118868491 + 0.833333 NA Intergenic L1MC3|LINE|L1 -20132 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 187.833-7 chr10 118986921 118987313 + 0.833333 NA Intergenic L1M4c|LINE|L1 -42597 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 224.833-23 chr7 69610203 69610600 + 0.833333 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 11926 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 177.833-21 chr2 108412894 108413192 + 0.833333 NA Intergenic Intergenic 35089 NM_001321770 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 172.333-21 chr14 79097696 79097908 + 0.833333 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -102180 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 177.833-39 chr9 35495467 35495719 + 0.833333 NA intron (NM_001330740, intron 1 of 10) L1MB3|LINE|L1 5482 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 225.667-15 chr18 23411659 23412054 + 0.833333 NA intron (NR_148382, intron 1 of 12) intron (NR_148382, intron 1 of 12) 26105 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 185.5-16 chr15 45289599 45289869 + 0.833333 NA Intergenic Intergenic -10512 NR_120335 101928414 NR_120335 ENSG00000259520 LOC101928414 - uncharacterized LOC101928414 ncRNA 242.333-24 chr7 2781689 2782065 + 0.833333 NA intron (NM_007353, intron 2 of 3) L1M4|LINE|L1 -18737 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 199.834-4 chr2 177984693 177985206 + 0.833333 NA intron (NM_001077197, intron 3 of 20) MIR|SINE|MIR -62112 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 182-36 chr5 34865633 34865917 + 0.833333 NA intron (NM_001317949, intron 6 of 10) AluJo|SINE|Alu 26394 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 202.5-27 chr18 34979246 34979560 + 0.833333 NA intron (NM_001143827, intron 1 of 7) intron (NM_001143827, intron 1 of 7) 1035 NM_001143827 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 237.833 chr10 73940833 73941209 + 0.833333 NA Intergenic Intergenic -18244 NR_160937 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 188.167-9 chr12 11516534 11516859 + 0.833333 NA Intergenic Intergenic -30018 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 184.167-18 chr2 42561833 42562155 + 0.833333 NA intron (NM_001282755, intron 2 of 17) MLT1C|LTR|ERVL-MaLR -6051 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 196.167-39 chr9 108565938 108566346 + 0.833333 NA Intergenic Intergenic 289844 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 202.833-12 chr2 178438721 178439089 + 0.833333 NA non-coding (NR_110204, exon 5 of 5) non-coding (NR_110204, exon 5 of 5) 11723 NM_001139518 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 214.5-18 chr18 73261853 73262326 + 0.833333 NA intron (NR_034133, intron 1 of 5) MER110|LTR|ERV1 2409 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 223.833-11 chr17 39149840 39150306 + 0.833333 NA intron (NM_020405, intron 1 of 13) MIR3|SINE|MIR 1564 NM_020405 57125 Hs.125036 NM_020405 ENSG00000161381 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 259.833-21 chrX 69387502 69388227 + 0.833333 NA Intergenic Intergenic -117371 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 179.5-52 chr9 24805491 24806031 + 0.833333 NA Intergenic Intergenic -259864 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 181.333-26 chr20 47189470 47189766 + 0.833333 NA TTS (NM_005244) TTS (NM_005244) 22651 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 274.833-9 chr3 111545449 111545832 + 0.833333 NA intron (NM_001318889, intron 2 of 7) intron (NM_001318889, intron 2 of 7) 3443 NR_134917 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 187-46 chr8 81620849 81621302 + 0.833333 NA intron (NR_146081, intron 5 of 7) intron (NR_146081, intron 5 of 7) 10202 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 275.5-10 chr16 12094422 12094857 + 0.833333 NA intron (NM_032167, intron 11 of 20) MER20|DNA|hAT-Charlie 117905 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 170.5-13 chr15 39143156 39143512 + 0.833333 NA Intergenic Intergenic -107335 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 393.833-4 chr3 143644251 143645012 + 0.833333 NA intron (NM_173653, intron 6 of 15) intron (NM_173653, intron 6 of 15) 203837 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 191-48 chr8 76201876 76202185 + 0.833333 NA Intergenic Intergenic -204624 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 264-19 chr18 11732068 11732604 + 0.833333 NA intron (NM_182978, intron 1 of 11) L1MB7|LINE|L1 -19136 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 202.167-37 chr8 105656144 105656714 + 0.833333 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 336886 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 208.167-24 chr7 98848025 98848307 + 0.833333 NA exon (NM_001134450, exon 8 of 8) exon (NM_001134450, exon 8 of 8) 21848 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 209.333-25 chr3 29902981 29903469 + 0.833333 NA intron (NM_001003793, intron 10 of 14) intron (NM_001003793, intron 10 of 14) 30931 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 173.667-25 chr18 2232739 2233081 + 0.833333 NA Intergenic LTR86C|LTR|ERVL 338595 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 254-13 chr18 3991867 3992295 + 0.833333 NA intron (NR_102696, intron 1 of 4) intron (NR_102696, intron 1 of 4) 29728 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 171.167-26 chr4 38656155 38656570 + 0.833333 NA intron (NR_026804, intron 1 of 7) intron (NR_026804, intron 1 of 7) -7837 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 188-23 chr2 46690434 46691023 + 0.833333 NA Intergenic Tigger7|DNA|TcMar-Tigger -8232 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 203.667-40 chr6 36288665 36288945 + 0.833333 NA intron (NM_001145717, intron 1 of 7) AluJr|SINE|Alu 18345 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 177.333-36 chr8 12840632 12840919 + 0.833333 NA Intergenic Intergenic -29297 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 250.167-17 chr7 24834845 24835229 + 0.833333 NA intron (NR_104111, intron 13 of 21) Tigger15a|DNA|TcMar-Tigger 57584 NM_145320 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 226.833-18 chr8 117115755 117116078 + 0.833333 NA intron (NM_001172815, intron 2 of 10) MamRep1879|DNA|hAT-Tip100? -19079 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 247.5-41 chr6 119148978 119149362 + 0.833333 NA promoter-TSS (NM_001100411) promoter-TSS (NM_001100411) 23 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 204.5-26 chr4 25668076 25668359 + 0.833333 NA intron (NM_001177999, intron 6 of 12) MIRb|SINE|MIR 11753 NM_001177999 10568 Hs.479372 NM_006424 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 member 2 protein-coding 181.667-21 chr18 10539746 10540069 + 0.833333 NA intron (NM_003826, intron 6 of 11) intron (NM_003826, intron 6 of 11) 13880 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 182.667-17 chr14 94959397 94959699 + 0.833333 NA Intergenic Intergenic 173955 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 357-13 chr4 30268566 30269389 + 0.833333 NA Intergenic Intergenic -451392 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 183.333-59 chr6 160731767 160732230 + 0.833333 NA intron (NM_000301, intron 12 of 18) intron (NM_000301, intron 12 of 18) 29805 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 168.667-30 chr3 113711246 113711672 + 0.833333 NA Intergenic L1ME1|LINE|L1 -14813 NR_111981 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 258-26 chr4 59285537 59286022 + 0.833333 NA Intergenic Intergenic 272206 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 171.334-3 chr12 125568905 125569441 + 0.833333 NA intron (NM_052907, intron 4 of 8) intron (NM_052907, intron 4 of 8) -53279 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 248-4 chr10 7939694 7940010 + 0.833333 NA intron (NM_031923, intron 2 of 6) HAL1|LINE|L1 112639 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 183.833-12 chr2 68837434 68837765 + 0.833333 NA Intergenic Intergenic 33798 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 166.5-25 chr20 22652997 22653393 + 0.833333 NA Intergenic Intergenic 32149 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 185.333-61 chrX 36856798 36857083 + 0.833333 NA Intergenic Charlie7|DNA|hAT-Charlie -151419 NM_001013736 442444 Hs.535216 NM_001013736 ENSG00000198173 FAM47C - family with sequence similarity 47 member C protein-coding 207.167-10 chr2 209391919 209392412 + 0.833333 NA Intergenic Intergenic -31882 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 171.667-40 chr3 115813731 115814134 + 0.833333 NA intron (NM_002338, intron 6 of 6) intron (NM_002338, intron 6 of 6) 91194 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 186-45 chr8 131564583 131565005 + 0.833333 NA Intergenic AluJr|SINE|Alu -339299 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 174-52 chrX 101348601 101349026 + 0.833333 NA promoter-TSS (NM_004085) promoter-TSS (NM_004085) -71 NM_001145951 1678 Hs.447877 NM_004085 ENSG00000126953 TIMM8A DDP|DDP1|DFN1|MTS|TIM8 translocase of inner mitochondrial membrane 8A protein-coding 183-20 chr16 29900156 29900581 + 0.833333 NA promoter-TSS (NM_181718) promoter-TSS (NM_181718) -120 NM_181718 253982 Hs.655761 NM_181718 ENSG00000174939 ASPHD1 - aspartate beta-hydroxylase domain containing 1 protein-coding 237.833-4 chr14 50769233 50769591 + 0.833333 NA intron (NM_016350, intron 12 of 28) intron (NM_016350, intron 12 of 28) -52385 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 192.333-15 chr13 56255528 56255945 + 0.833333 NA Intergenic Tigger1|DNA|TcMar-Tigger -885182 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 171-6 chr1 172671411 172671632 + 0.833333 NA Intergenic Intergenic 12418 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 203.833-8 chr16 11592143 11592665 + 0.833333 NA Intergenic AluSx1|SINE|Alu -4938 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 212.333-31 chr7 43227993 43228378 + 0.833333 NA intron (NM_015052, intron 2 of 29) intron (NM_015052, intron 2 of 29) 77290 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 191.333-34 chr4 153498631 153498961 + 0.833333 NA intron (NM_001131007, intron 3 of 34) intron (NM_001131007, intron 3 of 34) 32436 NM_001131007 23240 Hs.732450 NM_015196 ENSG00000121210 TMEM131L KIAA0922 transmembrane 131 like protein-coding 189.333-2 chr10 72155780 72156243 + 0.833333 NA intron (NM_001369110, intron 6 of 8) intron (NM_001369110, intron 6 of 8) 59945 NM_001369091 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 203.5-33 chr4 73724546 73725088 + 0.833333 NA Intergenic Intergenic -15752 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 209.667-29 chr3 180924611 180924913 + 0.833333 NA intron (NM_001363882, intron 2 of 16) AluSx|SINE|Alu 12091 NM_001363882 8087 Hs.478407 NM_005087 ENSG00000114416 FXR1 FXR1P FMR1 autosomal homolog 1 protein-coding 185.5-28 chr4 35370032 35370468 + 0.833333 NA Intergenic MLT1A0|LTR|ERVL-MaLR 873689 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 197.833-20 chr2 72356425 72356751 + 0.833333 NA intron (NR_135774, intron 17 of 19) intron (NR_135774, intron 17 of 19) -208726 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 314.833-10 chr3 186386501 186387232 + 0.833333 NA Intergenic Intergenic -24632 NM_001080744 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 254.5-27 chr4 114352259 114352633 + 0.833333 NA Intergenic L1MA3|LINE|L1 -245956 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 217.667-39 chr8 106834400 106834908 + 0.833333 NA Intergenic Intergenic -64410 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 220-5 chr12 1848483 1848770 + 0.833333 NA intron (NM_172364, intron 23 of 37).2 L1MC5|LINE|L1 28061 NM_001039029 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 233.333-18 chr2 128867444 128867836 + 0.833333 NA intron (NR_110278, intron 2 of 2) intron (NR_110278, intron 2 of 2) 3040 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 296.333-13 chr5 95960088 95960786 + 0.833333 NA intron (NM_012081, intron 1 of 11) intron (NM_012081, intron 1 of 11) 1414 NM_012081 22936 Hs.192221 NM_012081 ENSG00000118985 ELL2 MRCCAT1 elongation factor for RNA polymerase II 2 protein-coding 190.333-27 chr3 125110142 125110575 + 0.833333 NA intron (NM_001195483, intron 7 of 12) intron (NM_001195483, intron 7 of 12) 41194 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 178-13 chr17 57650071 57650478 + 0.833333 NA intron (NM_001322250, intron 10 of 13) intron (NM_001322250, intron 10 of 13) -41862 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 213.5-28 chr6 154488089 154488393 + 0.833333 NA intron (NM_001368117, intron 1 of 12) intron (NM_001368117, intron 1 of 12) -9750 NM_001368118 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 210.833-30 chr9 95317151 95317624 + 0.833333 NA promoter-TSS (NM_001243743) promoter-TSS (NM_001243743) -133 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 192.167-29 chr6 105085329 105085695 + 0.833333 NA Intergenic Intergenic 50834 NM_147147 11149 Hs.221660 NM_007073 ENSG00000112276 BVES CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1 blood vessel epicardial substance protein-coding 178.833-42 chr9 69376723 69377028 + 0.833333 NA intron (NM_001127608, intron 4 of 10) intron (NM_001127608, intron 4 of 10) 47550 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 175.333-29 chr2 100986594 100986897 + 0.833333 NA intron (NM_002518, intron 16 of 20) intron (NM_002518, intron 16 of 20) -9584 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 170.833-10 chr16 77585889 77586175 + 0.833333 NA Intergenic Intergenic -136460 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 195.167-23 chr18 22020919 22021466 + 0.833333 NA Intergenic Intergenic 147776 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 225.333-26 chr3 85033937 85034440 + 0.833333 NA intron (NM_001167674, intron 1 of 9) L1MA3|LINE|L1 28076 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 321.167-11 chr2 75710506 75710948 + 0.833333 NA exon (NM_003203, exon 1 of 17) exon (NM_003203, exon 1 of 17) 188 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 215.5-18 chr5 131589320 131589681 + 0.833333 NA intron (NM_016340, intron 4 of 27) intron (NM_016340, intron 4 of 27) 45729 NM_016340 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 221.167-15 chr17 49049684 49049987 + 0.833333 NA 3' UTR (NM_006546, exon 15 of 15) 3' UTR (NM_006546, exon 15 of 15) 52450 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 173.167-37 chr6 6696807 6697200 + 0.833333 NA Intergenic MADE2|DNA|TcMar-Mariner -74177 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 204.833-17 chr3 189485067 189485315 + 0.833333 NA Intergenic L1MCb|LINE|L1 -111555 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 202.333-30 chr6 132673457 132673945 + 0.833333 NA Intergenic Tigger5b|DNA|TcMar-Tigger -27675 NM_138327 134864 Hs.375030 NM_138327 ENSG00000146399 TAAR1 TA1|TAR1|TRAR1 trace amine associated receptor 1 protein-coding 191.167-30 chr9 70257758 70258092 + 0.833333 NA non-coding (NR_039990, exon 2 of 4) non-coding (NR_039990, exon 2 of 4) 949 NR_039990 100507299 Hs.556816 NR_039990 SMC5-AS1 MAMDC2-AS2 SMC5 antisense RNA 1 (head to head) ncRNA 225-31 chr5 146662317 146662656 + 0.833333 NA intron (NM_181678, intron 6 of 10) MER5B|DNA|hAT-Charlie -146373 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 292.333-22 chr8 81704680 81705257 + 0.833333 NA intron (NR_033194, intron 5 of 6) L1MEi|LINE|L1 -9910 NM_001010893 347051 Hs.683849 NM_001010893 ENSG00000253598 SLC10A5 P5 solute carrier family 10 member 5 protein-coding 227.833-20 chr8 104955594 104956129 + 0.833333 NA Intergenic LTR16A1|LTR|ERVL -362577 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 249.833-3 chr11 105525213 105526006 + 0.833333 NA Intergenic Intergenic -84464 NM_001077244 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 208.5-35 chr5 35918426 35918857 + 0.833333 NA intron (NM_001042625, intron 2 of 4) intron (NM_001042625, intron 2 of 4) 19981 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 165-23 chr17 39644905 39645233 + 0.833333 NA intron (NM_001165938, intron 1 of 13) intron (NM_001165938, intron 1 of 13) 7925 NM_006804 10948 Hs.728838 NM_006804 ENSG00000131748 STARD3 CAB1|MLN64|es64 StAR related lipid transfer domain containing 3 protein-coding 266.667 chr1 81975950 81976511 + 0.833333 NA intron (NM_001366002, intron 16 of 20) intron (NM_001366002, intron 16 of 20) 173777 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 186-6 chr11 90824123 90824424 + 0.833333 NA intron (NR_104190, intron 4 of 6) intron (NR_104190, intron 4 of 6) 44929 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 194.667-6 chr1 216451126 216451491 + 0.833333 NA Intergenic MER6|DNA|TcMar-Tigger -27860 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 209.833-4 chr1 227388701 227389096 + 0.833333 NA Intergenic Intergenic -70406 NM_001366011 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 251.333-25 chr7 74272634 74273095 + 0.833333 NA Intergenic Intergenic -16543 NM_032421 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 315.167-7 chr19 6685974 6686473 + 0.833333 NA exon (NM_000064, exon 29 of 41) exon (NM_000064, exon 29 of 41) -15635 NM_003807 8740 Hs.129708 NM_003807 ENSG00000125735 TNFSF14 CD258|HVEML|LIGHT|LTg TNF superfamily member 14 protein-coding 227-2 chr1 40531930 40532310 + 0.833333 NA intron (NM_152373, intron 1 of 4) intron (NM_152373, intron 1 of 4) 483 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 257.333-20 chr5 97924478 97924999 + 0.833333 NA Intergenic Intergenic 83980 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 241.667-21 chr3 125083940 125084382 + 0.833333 NA intron (NM_001195483, intron 12 of 12) intron (NM_001195483, intron 12 of 12) -28164 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 291.833-4 chr12 116864789 116865415 + 0.833333 NA intron (NM_003806, intron 1 of 1) intron (NM_003806, intron 1 of 1) 16339 NM_003806 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 211-32 chr20 51961177 51961632 + 0.833333 NA Intergenic Intergenic -98491 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 192.667-6 chr11 96278182 96278590 + 0.833333 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -63052 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 187.833-28 chr7 33109452 33109742 + 0.833333 NA promoter-TSS (NM_203288) promoter-TSS (NM_203288) -193 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 173.167-19 chr2 98314281 98314615 + 0.833333 NA Intergenic L1MEc|LINE|L1 -31707 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 173.833-20 chr19 31675206 31675567 + 0.833333 NA Intergenic Intergenic 83105 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 170.5-32 chr3 164139105 164139410 + 0.833333 NA Intergenic L2a|LINE|L2 32299 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 247-19 chr18 861537 862023 + 0.833333 NA Intergenic Intergenic -43091 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 178.833-20 chr2 74323597 74324021 + 0.833333 NA intron (NM_133478, intron 5 of 30) intron (NM_133478, intron 5 of 30) -8784 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 237.833-8 chr19 45492677 45493067 + 0.833333 NA intron (NM_206900, intron 4 of 9) intron (NM_206900, intron 4 of 9) 381 NM_206901 6253 Hs.47517 NM_005619 ENSG00000125744 RTN2 NSP2|NSPL1|NSPLI|SPG12 reticulon 2 protein-coding 234.167-8 chr11 111599634 111600151 + 0.833333 NA Intergenic L1MC4|LINE|L1 -2557 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 179.833-6 chr10 48686843 48687115 + 0.833333 NA intron (NM_020945, intron 1 of 61) L1ME3E|LINE|L1 1516 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 238.333-18 chr15 52568907 52569235 + 0.833333 NA promoter-TSS (NM_001330309) promoter-TSS (NM_001330309) -41 NM_001306196 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 173.167 chr1 17289921 17290463 + 0.833333 NA Intergenic AluSx1|SINE|Alu 12303 NR_039768 100616188 NR_039768 ENSG00000266634 MIR3972 - microRNA 3972 ncRNA 253.5-23 chr3 195261277 195261753 + 0.833333 NA intron (NM_152531, intron 1 of 3) intron (NM_152531, intron 1 of 3) 9644 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 285-8 chr17 15260707 15261424 + 0.833333 NA promoter-TSS (NM_153322) promoter-TSS (NM_153322) -245 NM_153322 5376 Hs.372031 NM_000304 ENSG00000109099 PMP22 CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110 peripheral myelin protein 22 protein-coding 241.667-11 chr15 59678427 59678911 + 0.833333 NA intron (NM_001368060, intron 3 of 8) intron (NM_001368060, intron 3 of 8) 10257 NM_001320675 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 196.5-22 chr20 46007702 46008071 + 0.833333 NA Intergenic AluJr4|SINE|Alu -1022 NM_004994 4318 Hs.297413 NM_004994 ENSG00000100985 MMP9 CLG4B|GELB|MANDP2|MMP-9 matrix metallopeptidase 9 protein-coding 171.5-16 chr14 19951638 19952177 + 0.833333 NA Intergenic Intergenic 16299 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 223-7 chr11 45273718 45274119 + 0.833333 NA intron (NM_001247987, intron 1 of 7) intron (NM_001247987, intron 1 of 7) 12423 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 177-31 chr5 112896558 112896866 + 0.833333 NA 3' UTR (NM_001204199, exon 5 of 5) 3' UTR (NM_001204199, exon 5 of 5) 25515 NM_005669 7905 Hs.429608 NM_005669 ENSG00000129625 REEP5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e receptor accessory protein 5 protein-coding 227.833-17 chr7 91239382 91239756 + 0.833333 NA Intergenic LTR16A1|LTR|ERVL -24864 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 174.5-8 chr12 12267062 12267310 + 0.833333 NA promoter-TSS (NM_002336).2 promoter-TSS (NM_002336).2 -142 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 206.333-27 chr4 21791011 21791363 + 0.833333 NA intron (NM_147182, intron 1 of 8) MLT1A0|LTR|ERVL-MaLR 62001 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 166.667-36 chr3 101677907 101678291 + 0.833333 NA promoter-TSS (NM_014415) promoter-TSS (NM_014415) -967 NM_014415 27107 Hs.655286 NM_014415 ENSG00000066422 ZBTB11 MRT69|ZNF-U69274|ZNF913 zinc finger and BTB domain containing 11 protein-coding 163.667-29 chr2 178442221 178442499 + 0.833333 NA intron (NM_001139517, intron 4 of 6) intron (NM_001139517, intron 4 of 6) 8268 NM_001139518 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 206.833-18 chr5 52505254 52505602 + 0.833333 NA Intergenic Intergenic -282488 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 250.833-6 chr12 75066827 75067223 + 0.833333 NA intron (NM_001260499, intron 2 of 3) AluJb|SINE|Alu 142723 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 187-37 chr6 14044264 14044514 + 0.833333 NA Intergenic Intergenic -72867 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 191.667-49 chrX 138034119 138034392 + 0.833333 NA Intergenic Intergenic 468128 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 173.667-34 chr3 73277796 73278061 + 0.833333 NA Intergenic Intergenic 156067 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 205.667-38 chr7 105281667 105281914 + 0.833333 NA intron (NM_001350746, intron 2 of 14) L1MB7|LINE|L1 -12713 NM_001350739 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 205-18 chr22 28443285 28443798 + 0.833333 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -16328 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 245-19 chr20 63503774 63504199 + 0.833333 NA Intergenic Intergenic -4903 NM_001958 1917 Hs.433839 NM_001958 ENSG00000101210 EEF1A2 EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL eukaryotic translation elongation factor 1 alpha 2 protein-coding 270.667-2 chr13 40271470 40271904 + 0.833333 NA Intergenic Intergenic -51185 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 291.333-19 chr8 75833879 75834690 + 0.833333 NA Intergenic L1MC5|LINE|L1 294316 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 188.333-8 chr11 64982366 64982771 + 0.833333 NA Intergenic L2a|LINE|L2 7709 NM_001300808 116071 Hs.124840 NM_138456 ENSG00000168062 BATF2 SARI basic leucine zipper ATF-like transcription factor 2 protein-coding 164-28 chr19 30055920 30056174 + 0.833333 NA Intergenic AluSx|SINE|Alu 113808 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 226.167-25 chr8 93454618 93454907 + 0.833333 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) 245671 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 166.5-26 chr22 26884010 26884435 + 0.833333 NA Intergenic MIRb|SINE|MIR -19070 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 169.5-35 chr4 119476444 119476889 + 0.833333 NA intron (NR_037630, intron 5 of 8) intron (NR_037630, intron 5 of 8) 21883 NR_037630 645513 Hs.677546 NR_037630 ENSG00000245958 LOC645513 - septin 7 pseudogene pseudo 190.167-21 chr6 71599988 71600401 + 0.833333 NA Intergenic Intergenic 179167 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 196.833-16 chr2 133262775 133263064 + 0.833333 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -3276 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 180.667-9 chr10 118664574 118664790 + 0.833333 NA Intergenic Intergenic -69034 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 278.333-5 chr10 74419753 74420218 + 0.833333 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 109339 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 221.167-13 chr15 66730681 66731140 + 0.833333 NA intron (NR_027654, intron 4 of 4) MIRb|SINE|MIR 28674 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 184.5-48 chr6 13100017 13100277 + 0.833333 NA intron (NM_001322308, intron 4 of 13) MER39|LTR|ERV1 86593 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 169.667-54 chr7 15090346 15090671 + 0.833333 NA Intergenic Intergenic -115650 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 311-20 chr8 85318001 85318621 + 0.833333 NA Intergenic Intergenic 23403 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 280-3 chr1 173945278 173945649 + 0.833333 NA intron (NM_001300850, intron 16 of 18) intron (NM_001300850, intron 16 of 18) -28085 NM_000488 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 172-9 chr11 118672771 118673019 + 0.833333 NA intron (NM_007180, intron 1 of 14) intron (NM_007180, intron 1 of 14) 6755 NM_001301065 11181 Hs.129712 NM_007180 ENSG00000118094 TREH TRE|TREA|TREHD trehalase protein-coding 254.833-12 chr2 24951755 24952569 + 0.833333 NA intron (NM_016544, intron 5 of 6) L1ME4b|LINE|L1 19793 NM_016544 51277 Hs.434993 NM_016544 ENSG00000115137 DNAJC27 RBJ|RabJS DnaJ heat shock protein family (Hsp40) member C27 protein-coding 200.167-6 chr10 51067578 51068170 + 0.833333 NA intron (NR_120678, intron 1 of 1) intron (NR_120678, intron 1 of 1) 678 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 230.667-19 chr3 116620446 116620907 + 0.833333 NA Intergenic Intergenic 68203 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 196.667-23 chr18 68013827 68014221 + 0.833333 NA Intergenic Intergenic -199202 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 253.667-18 chr16 48117333 48117853 + 0.833333 NA intron (NM_033226, intron 11 of 28) intron (NM_033226, intron 11 of 28) 29177 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 173.167-27 chr3 136604925 136605203 + 0.833333 NA intron (NM_005862, intron 3 of 33) intron (NM_005862, intron 3 of 33) 147314 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 165.833-22 chr2 77838597 77838996 + 0.833333 NA intron (NR_110288, intron 3 of 3) LTR49-int|LTR|ERV1 -77138 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 236-9 chr15 50355703 50356152 + 0.833333 NA promoter-TSS (NM_002041) promoter-TSS (NM_002041) -519 NM_002041 2553 Hs.654350 NM_002041 ENSG00000104064 GABPB1 BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4TF1B|GABPB|GABPB-1|GABPB2|NRF2B1|NRF2B2 GA binding protein transcription factor subunit beta 1 protein-coding 270.5-34 chr8 78076218 78076653 + 0.833333 NA Intergenic Intergenic -439905 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 215.667-45 chr9 69900504 69900925 + 0.833333 NA intron (NM_001010940, intron 5 of 5) intron (NM_001010940, intron 5 of 5) 79897 NR_131757 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 236.667-27 chr6 152796107 152796589 + 0.833333 NA Intergenic Intergenic 45551 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 177.667-35 chr6 74784058 74784352 + 0.833333 NA Intergenic L1M1|LINE|L1 344577 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 178.333-30 chr5 181073878 181074302 + 0.833333 NA Intergenic L1MC2|LINE|L1 -30606 NR_107056 102465882 NR_107056 ENSG00000277912 MIR8089 hsa-mir-8089 microRNA 8089 ncRNA 173.667-45 chr6 162907025 162907445 + 0.833333 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 146926 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 173-32 chr4 45598844 45599228 + 0.833333 NA Intergenic Intergenic 525018 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 308.167-11 chr2 189441158 189441728 + 0.833333 NA promoter-TSS (NM_032168) promoter-TSS (NM_032168) 10 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 235.833-17 chr4 40315622 40316057 + 0.833333 NA promoter-TSS (NR_121640) promoter-TSS (NR_121640) -645 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 183-2 chr1 93024086 93024456 + 0.833333 NA Intergenic AluSz6|SINE|Alu -54964 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 235.167-8 chr10 76543506 76544067 + 0.833333 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -344258 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 176-38 chr7 8830960 8831211 + 0.833333 NA Intergenic L1M2|LINE|L1 397476 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 212.667-42 chr6 7691862 7692321 + 0.833333 NA Intergenic Intergenic -34008 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 280.667-4 chr11 808876 809635 + 0.833333 NA promoter-TSS (NM_001004) promoter-TSS (NM_001004) -712 NM_001004 6181 Hs.437594 NM_001004 ENSG00000177600 RPLP2 D11S2243E|LP2|P2|RPP2 ribosomal protein lateral stalk subunit P2 protein-coding 176.667-30 chr2 217505752 217506127 + 0.833333 NA intron (NR_026597, intron 2 of 12) L1MC4|LINE|L1 223206 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 293.167-13 chr8 13385547 13385983 + 0.833333 NA intron (NM_024767, intron 4 of 4) intron (NM_024767, intron 4 of 4) -108981 NM_001348083 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 222.167-10 chr13 99995676 99995947 + 0.833333 NA non-coding (NR_047483, exon 1 of 1) non-coding (NR_047483, exon 1 of 1) 2098 NR_047483 100861542 Hs.508571 NR_047483 ENSG00000260738 LINC00554 lncZic2 long intergenic non-protein coding RNA 554 ncRNA 195.5-22 chr21 40609442 40609742 + 0.833333 NA intron (NR_073202, intron 3 of 32) intron (NR_073202, intron 3 of 32) 21175 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 169.333-10 chr10 29429578 29430135 + 0.833333 NA intron (NR_110927, intron 2 of 2) AluY|SINE|Alu 19613 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 169.833-9 chr12 23116164 23116505 + 0.833333 NA Intergenic Intergenic -59302 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 292.833-7 chr17 5439367 5440062 + 0.833333 NA promoter-TSS (NM_001212) promoter-TSS (NM_001212) -559 NM_001212 708 Hs.555866 NM_001212 ENSG00000108561 C1QBP COXPD33|GC1QBP|HABP1|SF2AP32|SF2p32|gC1Q-R|gC1qR|p32 complement C1q binding protein protein-coding 280.833-13 chr5 165100942 165101409 + 0.833333 NA Intergenic Intergenic 630896 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 290.167-8 chr15 83519842 83520403 + 0.833333 NA intron (NM_001324186, intron 2 of 9) LTR40a|LTR|ERVL 29508 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 208.167-3 chr1 63901018 63901361 + 0.833333 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 127172 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 164-40 chr20 52655717 52656172 + 0.833333 NA Intergenic MSTD|LTR|ERVL-MaLR 35106 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 198.667-7 chr12 15284404 15284764 + 0.833333 NA Intergenic L1MEc|LINE|L1 -37924 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 198.5-31 chr3 167675217 167675659 + 0.833333 NA Intergenic L1MC4|LINE|L1 -17515 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 212.833-14 chr20 20624269 20624746 + 0.833333 NA intron (NM_020343, intron 10 of 39) HAL1b|LINE|L1 88137 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 185-10 chr10 50916897 50917238 + 0.833333 NA Intergenic Intergenic -31392 NM_138932 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 224.833-11 chr15 89576860 89577252 + 0.833333 NA intron (NM_001308025, intron 1 of 21) AluSz6|SINE|Alu 1469 NM_001308025 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 213.333-32 chr5 95979840 95980203 + 0.833333 NA intron (NR_130776, intron 1 of 4) AluSx1|SINE|Alu 18020 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 164.333-32 chr21 34860185 34860574 + 0.833333 NA intron (NM_001001890, intron 2 of 5) MIR|SINE|MIR 28320 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 230-3 chr1 161747830 161748220 + 0.833333 NA Intergenic MER61F|LTR|ERV1 -1761 NM_007240 11266 Hs.416216 NM_007240 ENSG00000081721 DUSP12 DUSP1|YVH1 dual specificity phosphatase 12 protein-coding 364.5-13 chr8 130262476 130263218 + 0.833333 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 33686 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 207.333 chr1 40824726 40825025 + 0.833333 NA intron (NM_004700, intron 9 of 13) intron (NM_004700, intron 9 of 13) 37488 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 255.333-18 chr4 110962097 110962446 + 0.833333 NA Intergenic Intergenic -101624 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 205.167-14 chr2 189343639 189343969 + 0.833333 NA Intergenic LOR1-int|LTR|ERV1 -97629 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 167-21 chr2 221601210 221601505 + 0.833333 NA Intergenic Intergenic -27155 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 164-44 chr4 34073400 34073626 + 0.833333 NA Intergenic Intergenic -33620 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 178.833-24 chr21 21448287 21448639 + 0.833333 NA intron (NM_001352592, intron 13 of 18) L1PA8A|LINE|L1 288856 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 215-40 chr8 51133104 51133477 + 0.833333 NA Intergenic L1MB5|LINE|L1 676155 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 228.833-5 chr13 112858737 112859332 + 0.833333 NA intron (NM_032189, intron 22 of 28) intron (NM_032189, intron 22 of 28) -104303 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 219.667-36 chr9 127882101 127882416 + 0.833333 NA Intergenic Intergenic -2637 NM_001318121 203 Hs.175473 NM_000476 ENSG00000106992 AK1 HTL-S-58j adenylate kinase 1 protein-coding 185.333-27 chr2 179130355 179130623 + 0.833333 NA intron (NM_178123, intron 10 of 17) intron (NM_178123, intron 10 of 17) -80352 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 328.667-12 chr3 85812226 85812899 + 0.833333 NA intron (NR_046752, intron 1 of 3) L1PA7|LINE|L1 15488 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 219.667-24 chr4 25088822 25089090 + 0.833333 NA Intergenic Intergenic -58010 NM_018176 55203 Hs.12488 NM_018176 ENSG00000153012 LGI2 LGIL2 leucine rich repeat LGI family member 2 protein-coding 235.667-8 chr12 12563154 12563623 + 0.833333 NA promoter-TSS (NM_030640).2 promoter-TSS (NM_030640).2 -525 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 177.5-13 chr12 42751221 42751551 + 0.833333 NA Intergenic MIR|SINE|MIR 59170 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 200.333-37 chr7 2844551 2844914 + 0.833333 NA promoter-TSS (NM_007353) promoter-TSS (NM_007353) -424 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 248.167-23 chr6 134908802 134909317 + 0.833333 NA Intergenic Intergenic 41042 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 196.5-19 chr2 80777550 80778031 + 0.833333 NA Intergenic Intergenic 464411 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 176.667-2 chr1 13828784 13829002 + 0.833333 NA Intergenic Intergenic 79478 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 218-21 chr2 37343117 37343586 + 0.833333 NA Intergenic Intergenic -1279 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 164.5-57 chr8 137625221 137625479 + 0.833333 NA Intergenic Intergenic -211762 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 187.667-3 chr1 246016845 246017218 + 0.833333 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 400381 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 186.667-18 chr10 124802532 124803116 + 0.833333 NA intron (NM_032182, intron 1 of 8) intron (NM_032182, intron 1 of 8) 1005 NM_032182 23172 Hs.280695 NM_032182 ENSG00000165660 ABRAXAS2 ABRO1|FAM175B|KIAA0157 abraxas 2, BRISC complex subunit protein-coding 167.667-19 chr2 134701015 134701522 + 0.833333 NA intron (NM_030923, intron 2 of 7) HAL1|LINE|L1 17732 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 235.667-16 chr19 29355952 29356250 + 0.833333 NA intron (NR_040029, intron 9 of 9) L1M4|LINE|L1 -142950 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 215.333-33 chr3 160942749 160943203 + 0.833333 NA intron (NM_001317912, intron 2 of 4) intron (NM_001317912, intron 2 of 4) 72378 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 164.833-15 chr5 15896468 15896834 + 0.833333 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -38531 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 228.667-28 chr3 39705961 39706421 + 0.833333 NA Intergenic AluSx1|SINE|Alu -102723 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 252.667-10 chr12 76159616 76160266 + 0.833333 NA Intergenic L2c|LINE|L2 -75256 NM_004537 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 166.5-8 chr11 95138608 95138875 + 0.833333 NA Intergenic Intergenic -11798 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 202.833-25 chr7 7214463 7214739 + 0.833333 NA intron (NM_020156, intron 1 of 3) HUERS-P3b-int|LTR|ERV1 31986 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 241.667-8 chr11 133822074 133822635 + 0.833333 NA Intergenic Intergenic -11978 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 187.333-44 chr7 113954241 113954661 + 0.833333 NA Intergenic L1PA13|LINE|L1 -35442 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 234.667-31 chr7 104163816 104164252 + 0.833333 NA intron (NM_002553, intron 11 of 13) L1ME3Cz|LINE|L1 43979 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 194 chr1 80954516 80954869 + 0.833333 NA Intergenic L1MB7|LINE|L1 313405 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 177.667-36 chr6 92134113 92134487 + 0.833333 NA Intergenic L1MA5|LINE|L1 -443872 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 224.333-18 chr2 24164655 24165011 + 0.833333 NA intron (NR_111929, intron 5 of 5) intron (NR_111929, intron 5 of 5) -10220 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 261.833-18 chr9 36705697 36706063 + 0.833333 NA Intergenic MLT1L|LTR|ERVL-MaLR 117719 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 269.667-29 chrX 42614799 42615343 + 0.833333 NA Intergenic L1PB1|LINE|L1 163092 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 163.833-38 chr6 167285753 167286182 + 0.833333 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -5348 NM_001143947 54346 Hs.567508 NM_018974 ENSG00000112494 UNC93A Unc-93A|dJ366N23.1|dJ366N23.2 unc-93 homolog A protein-coding 184.333-26 chr3 151837290 151837543 + 0.833333 NA intron (NR_110203, intron 1 of 2) L4_B_Mam|LINE|RTE-X 23300 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 268.5-2 chr1 111165184 111165780 + 0.833333 NA intron (NM_001007794, intron 4 of 8) intron (NM_001007794, intron 4 of 8) 25259 NM_006090 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 177.167-8 chr11 33027077 33027327 + 0.833333 NA intron (NM_001077242, intron 2 of 8) MER46C|DNA|TcMar-Tigger 11020 NM_139160 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 179.5-35 chr4 47451807 47452045 + 0.833333 NA intron (NM_001329668, intron 4 of 4) intron (NM_001329668, intron 4 of 4) 11776 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 244.667-30 chr6 159794473 159794834 + 0.833333 NA intron (NR_134861, intron 2 of 3) L1ME4b|LINE|L1 4136 NR_134861 29074 Hs.416998 NM_014161 ENSG00000112110 MRPL18 HSPC071|L18mt|MRP-L18 mitochondrial ribosomal protein L18 protein-coding 237.833-5 chr14 63555476 63555908 + 0.833333 NA Intergenic Intergenic -12297 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 197.167 chr1 16146586 16146976 + 0.833333 NA intron (NM_004431, intron 3 of 16) intron (NM_004431, intron 3 of 16) 9288 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 178.5-11 chr12 4535479 4535806 + 0.833333 NA intron (NR_144382, intron 1 of 9) intron (NR_144382, intron 1 of 9) 2827 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 208.667-29 chr20 5950655 5950916 + 0.833333 NA promoter-TSS (NM_015939) promoter-TSS (NM_015939) 133 NM_001281522 84515 Hs.597484 NM_032485 ENSG00000125885 MCM8 C20orf154|POF10|dJ967N21.5 minichromosome maintenance 8 homologous recombination repair factor protein-coding 259.667-23 chr9 16543692 16544048 + 0.833333 NA intron (NM_001317939, intron 4 of 6) intron (NM_001317939, intron 4 of 6) -182944 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 175.333-14 chr14 61735959 61736294 + 0.833333 NA intron (NM_181054, intron 8 of 13) AluSz6|SINE|Alu 12963 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 207.833-25 chr6 78598825 78599083 + 0.833333 NA Intergenic Intergenic -59645 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 190.333-33 chr6 42402146 42402577 + 0.833333 NA intron (NM_001297573, intron 2 of 17) intron (NM_001297573, intron 2 of 17) 49690 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 194.5-4 chr1 118241650 118241924 + 0.833333 NA Intergenic Intergenic -56559 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 182-14 chr16 14215389 14215724 + 0.833333 NA intron (NM_001308142, intron 6 of 16) intron (NM_001308142, intron 6 of 16) 28870 NM_001365416 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 229.5-11 chr14 74093588 74094202 + 0.833333 NA intron (NM_001024674, intron 2 of 5) AluSq2|SINE|Alu 8942 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 239-7 chr13 91172023 91172466 + 0.833333 NA intron (NR_047004, intron 2 of 3) L1M5|LINE|L1 39454 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 164.5-36 chr3 86702961 86703328 + 0.833333 NA Intergenic Intergenic 221201 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 259.833-12 chr2 210433680 210434125 + 0.833333 NA 3' UTR (NM_001136575, exon 10 of 10) 3' UTR (NM_001136575, exon 10 of 10) 42803 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 283-24 chr8 23945975 23946576 + 0.833333 NA Intergenic L1MB7|LINE|L1 -91469 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 232.5-3 chr1 165597978 165598346 + 0.833333 NA Intergenic CpG -16007 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LRRC52-AS1 - LRRC52 antisense RNA 1 ncRNA 201.167-31 chr8 109620850 109621137 + 0.833333 NA intron (NM_001099746, intron 1 of 5) intron (NM_001099746, intron 1 of 5) -12931 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 228.5-5 chr14 52748298 52748752 + 0.833333 NA intron (NM_001130701, intron 4 of 11) intron (NM_001130701, intron 4 of 11) 18359 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 227.5-26 chr4 82738847 82739522 + 0.833333 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) 14246 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 246.167-6 chr11 82166301 82166787 + 0.833333 NA intron (NR_120571, intron 3 of 7) MIRc|SINE|MIR 237369 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 224.5-9 chr14 75708105 75708661 + 0.833333 NA intron (NM_015072, intron 9 of 31) intron (NM_015072, intron 9 of 31) 47137 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 230.333-20 chr2 73446139 73446520 + 0.833333 NA intron (NM_015120, intron 7 of 22) intron (NM_015120, intron 7 of 22) -10774 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 269.333-18 chr4 169612965 169613598 + 0.833333 NA promoter-TSS (NM_001199398) promoter-TSS (NM_001199398) -698 NM_001199397 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 181.667-5 chr1 246324664 246324920 + 0.833333 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 92620 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 217.167-35 chrX 144311005 144311534 + 0.833333 NA Intergenic L1MA2|LINE|L1 427198 NR_121210 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 230.833-7 chr15 66565936 66566288 + 0.833333 NA promoter-TSS (NR_103739) promoter-TSS (NR_103739) -114 NM_001278562 197021 Hs.680983 NM_207338 ENSG00000188501 LCTL KLG|KLPH lactase like protein-coding 360.167-6 chr3 116835297 116836013 + 0.833333 NA Intergenic Intergenic 14712 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 173.333-30 chr7 71735267 71735681 + 0.833333 NA Intergenic AluJr|SINE|Alu -427704 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 166.5-12 chr12 52069090 52069397 + 0.833333 NA promoter-TSS (NM_021934) promoter-TSS (NM_021934) -731 NM_021934 60673 Hs.9911 NM_021934 ENSG00000123395 ATG101 C12orf44 autophagy related 101 protein-coding 218.5-2 chr1 159925585 159925888 + 0.833333 NA promoter-TSS (NM_003564) promoter-TSS (NM_003564) -229 NM_003564 8407 Hs.517168 NM_003564 ENSG00000158710 TAGLN2 HA1756 transgelin 2 protein-coding 256.833-5 chr10 127674650 127675013 + 0.833333 NA Intergenic L1ME3|LINE|L1 -62354 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 192.167-30 chr6 142944054 142944298 + 0.833333 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 1000 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 203.667-36 chr5 3207950 3208326 + 0.833333 NA Intergenic Intergenic 30303 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 175.833-30 chr3 102733651 102733968 + 0.833333 NA Intergenic Intergenic 298794 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 296.5-15 chr18 5254976 5255473 + 0.833333 NA Intergenic Intergenic 17124 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 179.667-4 chr11 111865928 111866323 + 0.833333 NA intron (NR_147984, intron 3 of 15) AluSx1|SINE|Alu 5156 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 201.667-44 chr5 31183853 31184150 + 0.833333 NA Intergenic Intergenic -9685 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 326.5-13 chr3 172675393 172676158 + 0.833333 NA intron (NM_001146276, intron 1 of 4) intron (NM_001146276, intron 1 of 4) 35292 NM_001146277 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 231.833-18 chr7 131327362 131327744 + 0.833333 NA promoter-TSS (NM_013255) promoter-TSS (NM_013255) 226 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 202.833-16 chr20 11336786 11337293 + 0.833333 NA Intergenic MER58A|DNA|hAT-Charlie -63656 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 164.333-29 chr2 111230095 111230337 + 0.833333 NA intron (NR_015395, intron 5 of 6) L1MD2|LINE|L1 90870 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 328.167-4 chr3 165651986 165652655 + 0.833333 NA Intergenic Intergenic 185103 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 219.833 chr10 102112480 102112763 + 0.833333 NA intron (NM_001113407, intron 1 of 10) intron (NM_001113407, intron 1 of 10) 2381 NM_003893 8861 Hs.454418 NM_003893 ENSG00000198728 LDB1 CLIM-2|CLIM2|LDB-1|NLI LIM domain binding 1 protein-coding 233-6 chr11 130522414 130522852 + 0.833333 NA Intergenic Intergenic 73659 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 213.333-40 chr6 166913510 166913809 + 0.833333 NA Intergenic MIRb|SINE|MIR 9961 NR_046644 100861523 Hs.634640 NR_046644 RPS6KA2-AS1 - RPS6KA2 antisense RNA 1 ncRNA 213.167-6 chr13 55079386 55079683 + 0.833333 NA Intergenic Intergenic -94920 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 237.833-16 chr4 147518993 147519293 + 0.833333 NA intron (NM_001166055, intron 2 of 5) intron (NM_001166055, intron 2 of 5) 38046 NR_148964 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 189-13 chr11 62338258 62338559 + 0.833333 NA intron (NM_025080, intron 2 of 6) MER4D1|LTR|ERV1 960 NM_001083926 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 197.667-9 chr10 114621740 114622140 + 0.833333 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -8204 NM_001352442 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 259.5-10 chr14 67420094 67420509 + 0.833333 NA Intergenic Intergenic -8136 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 210.833-20 chr3 116114438 116115034 + 0.833333 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -209610 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 177.667-21 chr19 48363722 48363985 + 0.833333 NA promoter-TSS (NM_012451) promoter-TSS (NM_012451) 87 NM_001303540 55260 Hs.351335 NM_018273 ENSG00000161558 TMEM143 - transmembrane protein 143 protein-coding 251.834-6 chr2 174862496 174863112 + 0.833333 NA intron (NR_038133, intron 5 of 11) intron (NR_038133, intron 5 of 11) -15186 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 201.5-37 chr8 122048316 122048684 + 0.833333 NA Intergenic Intergenic -407060 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 212-25 chr2 71379891 71380220 + 0.833333 NA intron (NM_001252613, intron 8 of 27) intron (NM_001252613, intron 8 of 27) 48273 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 351.333-2 chr10 93468408 93468917 + 0.833333 NA intron (NM_013451, intron 1 of 53) intron (NM_013451, intron 1 of 53) 13672 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 172 chr1 11010206 11010618 + 0.833333 NA Intergenic AluJr|SINE|Alu -2210 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 373.5-4 chr2 139656220 139656721 + 0.833333 NA Intergenic Intergenic 759146 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 189.833-8 chr14 31085735 31086102 + 0.833333 NA TTS (NM_001254727) TTS (NM_001254727) 59275 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 251.5-4 chr10 37253953 37254390 + 0.833333 NA Intergenic L1MB7|LINE|L1 -55015 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 206.834-10 chr2 108574407 108574976 + 0.833333 NA intron (NM_001193483, intron 1 of 9) MIRc|SINE|MIR -13615 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 216.833-22 chr5 17851077 17851607 + 0.833333 NA intron (NR_134286, intron 3 of 7) L1ME4b|LINE|L1 44068 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 216.833-14 chr19 28465441 28465724 + 0.833333 NA intron (NR_110759, intron 6 of 9) intron (NR_110759, intron 6 of 9) -141106 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 200.333-20 chr19 10654378 10654696 + 0.833333 NA promoter-TSS (NR_024333) promoter-TSS (NR_024333) 191 NM_012218 3609 Hs.465885 NM_004516 ENSG00000129351 ILF3 CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|MPP4110|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NF90c|NF90ctv|NFAR|NFAR-1|NFAR-2|NFAR110|NFAR2|NFAR90|TCP110|TCP80 interleukin enhancer binding factor 3 protein-coding 193-7 chr10 109429834 109430178 + 0.833333 NA Intergenic Intergenic 493240 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 227.833-18 chr7 157553051 157553437 + 0.833333 NA intron (NM_130843, intron 20 of 21) intron (NM_130843, intron 20 of 21) 21178 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 225.333-35 chr8 79906015 79906392 + 0.833333 NA Intergenic Intergenic -34466 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 275.167-2 chr1 185497724 185498297 + 0.833333 NA Intergenic L1ME4a|LINE|L1 130478 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 185.333-7 chr11 32007368 32007672 + 0.833333 NA Intergenic Intergenic 33798 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 192.167-6 chr10 11011886 11012271 + 0.833333 NA intron (NM_001326339, intron 1 of 11) intron (NM_001326339, intron 1 of 11) -5794 NM_001326342 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 200.5-27 chr2 198170074 198170396 + 0.833333 NA Intergenic Intergenic 204862 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 277.5-18 chr5 89227693 89228119 + 0.833333 NA intron (NR_136219, intron 7 of 9) L1MB7|LINE|L1 -323801 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 183.167-22 chr22 25001621 25001893 + 0.833333 NA Intergenic Intergenic -26217 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 192.667-17 chr2 54864523 54864812 + 0.833333 NA intron (NM_001039753, intron 12 of 40) intron (NM_001039753, intron 12 of 40) 139655 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 164.667-14 chr12 121046780 121047043 + 0.833333 NA Intergenic MLT1H|LTR|ERVL-MaLR -7669 NM_198213 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 167-2 chr1 41085967 41086304 + 0.833333 NA intron (NM_001172222, intron 4 of 10) AluSg|SINE|Alu -64380 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 164.833-11 chr2 219645266 219645758 + 0.833333 NA Intergenic Intergenic 17882 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 197.833-27 chr5 58365330 58365689 + 0.833333 NA Intergenic Intergenic 94577 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 278.833-2 chr10 48303670 48304131 + 0.833333 NA Intergenic Intergenic -2739 NM_001278547 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 208.167-11 chr15 57996653 57996969 + 0.833333 NA intron (NM_170696, intron 4 of 11) L1ME4b|LINE|L1 17212 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 201.333 chr1 23653714 23654077 + 0.833333 NA Intergenic Intergenic 26561 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 171.333-28 chr2 216642668 216642979 + 0.666667 NA intron (NM_000597, intron 1 of 3) intron (NM_000597, intron 1 of 3) 9403 NM_000597 3485 Hs.438102 NM_000597 ENSG00000115457 IGFBP2 IBP2|IGF-BP53 insulin like growth factor binding protein 2 protein-coding 171.833-16 chr3 146505628 146505972 + 0.666667 NA Intergenic L1M5|LINE|L1 -9809 NM_001199979 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 226.167-14 chr2 58496806 58497270 + 0.666667 NA Intergenic Intergenic -23715 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 174.5-21 chr20 57853119 57853518 + 0.666667 NA Intergenic L1MEf|LINE|L1 -141782 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 179.167-29 chr8 139646907 139647341 + 0.666667 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 55999 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 174-24 chr2 27052702 27053077 + 0.666667 NA intron (NR_104246, intron 1 of 15) intron (NR_104246, intron 1 of 15) 1221 NM_001035507 60509 Hs.138207 NM_021831 ENSG00000084693 AGBL5 CCP5|RP75 ATP/GTP binding protein like 5 protein-coding 181.667-41 chr6 42543432 42543845 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -20384 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 259.667-6 chr15 48855891 48856401 + 0.666667 NA intron (NM_203349, intron 7 of 11) intron (NM_203349, intron 7 of 11) -21988 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 178.333-11 chr12 64327538 64327884 + 0.666667 NA intron (NM_001170633, intron 3 of 12) intron (NM_001170633, intron 3 of 12) 63047 NM_001170633 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 222.833-10 chr15 23641724 23642110 + 0.666667 NA Intergenic Intergenic 5950 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 206.667-27 chr2 97775594 97775979 + 0.666667 NA intron (NM_015348, intron 32 of 40) intron (NM_015348, intron 32 of 40) 41380 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 180.667-6 chr10 15088525 15088863 + 0.666667 NA promoter-TSS (NR_144471) promoter-TSS (NR_144471) 82 NR_144471 108949267 Hs.723069 NR_144471 ACBD7-DCLRE1CP1 - ACBD7-DCLRE1CP1 readthrough ncRNA 183.333-3 chr1 93442644 93442950 + 0.666667 NA Intergenic Intergenic -5321 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 223.667-18 chr14 71072255 71072700 + 0.666667 NA intron (NM_014982, intron 26 of 35) intron (NM_014982, intron 26 of 35) 165018 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 237.667-31 chr4 139531047 139531663 + 0.666667 NA intron (NM_001306199, intron 3 of 7) intron (NM_001306199, intron 3 of 7) 25414 NM_030648 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing 7, histone lysine methyltransferase protein-coding 199.333-22 chr18 6278966 6279506 + 0.666667 NA intron (NM_001365769, intron 4 of 16) intron (NM_001365769, intron 4 of 16) 22492 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 167.5-2 chr1 152994476 152995046 + 0.666667 NA Intergenic L1MD2|LINE|L1 -6986 NM_005416 6707 Hs.139322 NM_005416 ENSG00000163209 SPRR3 - small proline rich protein 3 protein-coding 170.833-18 chr2 21970388 21970692 + 0.666667 NA Intergenic Intergenic -259888 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 178-15 chr18 12992278 12992629 + 0.666667 NA intron (NM_032142, intron 1 of 44) intron (NM_032142, intron 1 of 44) 1091 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 237.5-19 chr19 44070409 44070813 + 0.666667 NA Intergenic Intergenic -1548 NM_001037813 342909 Hs.445395 NM_001037813 ENSG00000186026 ZNF284 ZNF284L zinc finger protein 284 protein-coding 245.666-3 chr12 119527998 119528726 + 0.666667 NA intron (NM_178499, intron 11 of 13) intron (NM_178499, intron 11 of 13) -65412 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 305.167-5 chr17 57670450 57670972 + 0.666667 NA intron (NM_138962, intron 11 of 13) intron (NM_138962, intron 11 of 13) -62299 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 211.167 chr1 23878718 23879104 + 0.666667 NA intron (NM_001841, intron 1 of 1) L1ME3A|LINE|L1 -10542 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 171.167-6 chr10 5433408 5433843 + 0.666667 NA intron (NM_001047160, intron 3 of 11) L1M8|LINE|L1 -12926 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 189.667-50 chr7 34319423 34319897 + 0.666667 NA Intergenic MIR3|SINE|MIR -338558 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 254.167-23 chr4 157672920 157673404 + 0.666667 NA Intergenic Intergenic 100672 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 175.833-15 chr14 91995590 91995919 + 0.666667 NA intron (NM_004239, intron 13 of 20) AluSx|SINE|Alu 44305 NM_001321851 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|ODCD|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 228-40 chr8 143278379 143278761 + 0.666667 NA Intergenic CpG 3130 NR_120683 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long non-coding RNA ncRNA 243.333-41 chr8 15699592 15700046 + 0.666667 NA intron (NM_001356429, intron 6 of 10) intron (NM_001356429, intron 6 of 10) 159556 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 169.333-66 chr9 101458756 101459293 + 0.666667 NA Intergenic L2a|LINE|L2 -9415 NR_121576 101928470 Hs.656088 NR_121573 ENSG00000225376 TMEM246-AS1 - TMEM246 antisense RNA 1 ncRNA 187-13 chr16 80749060 80749476 + 0.666667 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 55330 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 213.667-25 chr2 80634081 80634453 + 0.666667 NA intron (NM_001320810, intron 12 of 12) L2a|LINE|L2 320888 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 190.5-28 chr20 49977693 49978044 + 0.666667 NA Intergenic AluJb|SINE|Alu -5112 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 200.333-32 chr5 107524758 107525252 + 0.666667 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 145932 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 253.167-18 chr5 23363331 23363725 + 0.666667 NA Intergenic Intergenic -144081 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 168.333-45 chr3 90476172 90476519 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 1368724 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 175.167-47 chrX 38219894 38220420 + 0.666667 NA intron (NM_006307, intron 1 of 9) intron (NM_006307, intron 1 of 9) 714 NM_006307 8406 Hs.15154 NM_006307 ENSG00000101955 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi repeat containing protein X-linked protein-coding 204.333-27 chr20 59607940 59608284 + 0.666667 NA intron (NM_080672, intron 1 of 12) L1ME3G|LINE|L1 3572 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 185-4 chr1 151964296 151964700 + 0.666667 NA Intergenic MLT1N2|LTR|ERVL-MaLR 29361 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 191.5-48 chr7 76423957 76424334 + 0.666667 NA promoter-TSS (NM_001110354) promoter-TSS (NM_001110354) -805 NM_001110354 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 OOMD3|ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 200 chr1 73236748 73237097 + 0.666667 NA Intergenic Intergenic -69248 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 172.333-4 chr1 85955666 85956091 + 0.666667 NA intron (NM_152890, intron 24 of 59) intron (NM_152890, intron 24 of 59) 200593 NR_146344 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 246.333-16 chr13 29395496 29396077 + 0.666667 NA intron (NM_001033602, intron 6 of 13) intron (NM_001033602, intron 6 of 13) -32874 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 210.333-29 chr5 76756243 76756827 + 0.666667 NA Intergenic MER51A|LTR|ERV1 40409 NM_001311313 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 186.333-15 chr14 63151697 63152338 + 0.666667 NA Intergenic Tigger17a|DNA|TcMar-Tigger -52426 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 207.333-45 chr7 5764849 5765369 + 0.666667 NA intron (NM_207111, intron 1 of 16) L1MEi|LINE|L1 16554 NM_207111 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 215.833-14 chr19 8974154 8974592 + 0.666667 NA exon (NM_024690, exon 1 of 84) exon (NM_024690, exon 1 of 84) 6969 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 257.667-7 chr15 71052020 71052654 + 0.666667 NA Intergenic Intergenic -89112 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 164-3 chr1 212681383 212681789 + 0.666667 NA Intergenic Intergenic 18254 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 199.833-2 chr1 42639469 42639897 + 0.666667 NA intron (NM_001080850, intron 12 of 16) MIRb|SINE|MIR -18740 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 253.333-42 chrX 111719803 111720326 + 0.666667 NA intron (NM_001099922, intron 10 of 26) intron (NM_001099922, intron 10 of 26) 38407 NM_001324294 79868 Hs.443061 NM_018466 ENSG00000101901 ALG13 CDG1S|CXorf45|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W ALG13 UDP-N-acetylglucosaminyltransferase subunit protein-coding 163.333-5 chr10 16898622 16898939 + 0.666667 NA intron (NM_001081, intron 54 of 66) intron (NM_001081, intron 54 of 66) -81326 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 254-30 chr9 88852548 88852979 + 0.666667 NA Intergenic Intergenic -106858 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 270-7 chr10 125436395 125437238 + 0.666667 NA Intergenic L1MA2|LINE|L1 -137555 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 217.167-16 chr2 45482366 45482848 + 0.666667 NA intron (NM_018079, intron 15 of 20) intron (NM_018079, intron 15 of 20) 128660 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 174.5-25 chr4 47974812 47975211 + 0.666667 NA intron (NM_001142564, intron 1 of 9) MIRc|SINE|MIR 6522 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 207.167-6 chr13 102901317 102902025 + 0.666667 NA Intergenic Intergenic 21572 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 164-11 chr11 110390561 110390880 + 0.666667 NA intron (NR_135100, intron 3 of 3) L1MC3|LINE|L1 35606 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 173.333-5 chr12 31671970 31672379 + 0.666667 NA non-coding (NR_103522, exon 9 of 9) non-coding (NR_103522, exon 9 of 9) 12486 NM_001135863 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 180.333-24 chr18 60272172 60272659 + 0.666667 NA Intergenic L1MC4|LINE|L1 100360 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 191.833-12 chr19 36865809 36866340 + 0.666667 NA intron (NM_001242476, intron 3 of 3) L1M5|LINE|L1 14423 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 171.833-17 chr4 15656677 15657249 + 0.666667 NA Intergenic MIRb|SINE|MIR -1551 NM_001193535 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 239.167-29 chr7 32941373 32941933 + 0.666667 NA intron (NR_003500, intron 1 of 5) MER34C2|LTR|ERV1 1517 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - RP9 pseudogene pseudo 168.333-60 chr7 98433138 98433460 + 0.666667 NA Intergenic Intergenic -32209 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 191-2 chr1 70403453 70404063 + 0.666667 NA Intergenic Intergenic -7460 NM_001190463 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 210.667-34 chr4 76314631 76315284 + 0.666667 NA intron (NM_001042784, intron 23 of 23) L1PB1|LINE|L1 8931 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 248.333-17 chr2 175216363 175216813 + 0.666667 NA Intergenic L1MB8|LINE|L1 -34878 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 253.667-34 chr6 41715792 41716359 + 0.666667 NA intron (NM_001167827, intron 1 of 8) MIR|SINE|MIR 17535 NR_162107 113218489 NR_162107 MIR10398 - microRNA 10398 ncRNA 211.667-32 chr5 37535790 37536287 + 0.666667 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 156720 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 177.167-27 chr7 101856630 101857005 + 0.666667 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 39191 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 170.333-3 chr1 182122548 182123042 + 0.666667 NA Intergenic Intergenic -61083 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 163.667-11 chr11 106911984 106912337 + 0.666667 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 106316 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 183.667-41 chr4 26069381 26069734 + 0.666667 NA Intergenic Intergenic 155365 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 170.333-36 chr22 27747279 27747659 + 0.666667 NA TTS (NM_002430) TTS (NM_002430) 54287 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 183.5-4 chr10 68600163 68600540 + 0.666667 NA intron (NM_030625, intron 2 of 11) intron (NM_030625, intron 2 of 11) 40014 NM_030625 80312 Hs.258855 NM_030625 ENSG00000138336 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 173.333-13 chr16 65319794 65320214 + 0.666667 NA intron (NR_027755, intron 7 of 8) intron (NR_027755, intron 7 of 8) -143431 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 224.333-23 chr2 205332656 205333202 + 0.666667 NA intron (NM_205863, intron 18 of 21) MIRb|SINE|MIR -349571 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 210.167-24 chr4 59190557 59190947 + 0.666667 NA Intergenic Intergenic 177179 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 195-39 chr5 110367827 110368234 + 0.666667 NA Intergenic L1ME2|LINE|L1 145885 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 169.333-69 chrX 92266002 92266492 + 0.666667 NA intron (NM_032968, intron 4 of 6) intron (NM_032968, intron 4 of 6) 430786 NM_032968 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 240-34 chr22 28077630 28078390 + 0.666667 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -157398 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 192.333-53 chr9 78925511 78926064 + 0.666667 NA Intergenic MER89-int|LTR|ERV1 219879 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 169.833-7 chr11 115312431 115312914 + 0.666667 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -20905 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 195.167-33 chr3 146190949 146191701 + 0.666667 NA Intergenic Intergenic -29830 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 173.833-26 chr5 7213329 7213841 + 0.666667 NA Intergenic Intergenic 55769 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 196.833-14 chr2 46770339 46770714 + 0.666667 NA Intergenic Intergenic -46142 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 215-35 chr5 132381561 132381956 + 0.666667 NA intron (NM_003060, intron 2 of 9) intron (NM_003060, intron 2 of 9) -11842 NR_110997 553103 Hs.570908 NR_110997 ENSG00000233006 MIR3936HG SLC22A5-AS1 MIR3936 host gene ncRNA 168-13 chr12 12212565 12212877 + 0.666667 NA intron (NM_002336, intron 2 of 22).2 L4_A_Mam|LINE|RTE-X 54323 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 171.667-36 chr21 27652001 27652528 + 0.666667 NA Intergenic Intergenic -70115 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 208-31 chr3 158091050 158091505 + 0.666667 NA Intergenic MIRb|SINE|MIR 14886 NM_001163678 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 177-11 chr13 41728075 41728438 + 0.666667 NA intron (NM_001009814, intron 23 of 25) intron (NM_001009814, intron 23 of 25) -159861 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 165-43 chr5 149540363 149540836 + 0.666667 NA intron (NM_001271742, intron 1 of 9) intron (NM_001271742, intron 1 of 9) 9766 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 205.333-23 chr2 202252887 202253340 + 0.666667 NA Intergenic MER50B|LTR|ERV1 -12650 NM_015934 51602 Hs.471104 NM_015934 ENSG00000055044 NOP58 HSPC120|NOP5|NOP5/NOP58 NOP58 ribonucleoprotein protein-coding 178.5-21 chr18 73307249 73307686 + 0.666667 NA Intergenic Intergenic -17474 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 176.667-41 chr4 65585726 65586065 + 0.666667 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 83593 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 190.667-9 chr10 105769448 105769911 + 0.666667 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 50654 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 194.167-21 chr22 22956663 22957074 + 0.666667 NA Intergenic AluJo|SINE|Alu 69052 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 177.833-40 chr9 68517067 68517473 + 0.666667 NA intron (NM_021965, intron 10 of 10) intron (NM_021965, intron 10 of 10) 23597 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 170-20 chr15 60424079 60424496 + 0.666667 NA intron (NR_147171, intron 16 of 16) A-rich|Low_complexity|Low_complexity -26301 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 219.5-36 chr8 8530755 8531096 + 0.666667 NA Intergenic Intergenic -144486 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 193.667-36 chr3 98037865 98038314 + 0.666667 NA Intergenic Intergenic -2785 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 193.833-8 chr14 75445839 75446261 + 0.666667 NA intron (NM_130469, intron 2 of 3) L1MB8|LINE|L1 13916 NM_001135049 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 166-41 chr19 43463365 43463801 + 0.666667 NA intron (NM_014400, intron 3 of 4) CpG-14618 2025 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 184.667-3 chr1 188162407 188162905 + 0.666667 NA Intergenic Intergenic 719028 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 180.333-4 chr1 163321562 163322015 + 0.666667 NA promoter-TSS (NM_031423) promoter-TSS (NM_031423) 3 NR_045630 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 206.333 chr1 20616523 20616901 + 0.666667 NA intron (NM_001785, intron 3 of 3) intron (NM_001785, intron 3 of 3) -16746 NM_032409 65018 Hs.389171 NM_032409 ENSG00000158828 PINK1 BRPK|PARK6 PTEN induced kinase 1 protein-coding 246.5-7 chr13 98866832 98867369 + 0.666667 NA intron (NM_001366682, intron 30 of 53) intron (NM_001366682, intron 30 of 53) 35016 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 179.167-2 chr1 107433154 107433573 + 0.666667 NA intron (NM_001113226, intron 5 of 6) AluSz|SINE|Alu 255136 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 253.667-16 chr15 95159423 95160238 + 0.666667 NA Intergenic Intergenic 167270 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 236.833-15 chr20 11886209 11886808 + 0.666667 NA Intergenic Intergenic -4215 NM_181443 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 209.333-27 chr4 41870139 41870495 + 0.666667 NA Intergenic Intergenic 12294 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 203.667-57 chr8 122694857 122695389 + 0.666667 NA Intergenic L1MD2|LINE|L1 -1017 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 169.333 chr1 11099903 11100239 + 0.666667 NA promoter-TSS (NR_135063) promoter-TSS (NR_135063) 52 NR_135063 105376736 Hs.634965 NR_135061 ENSG00000230337 EXOSC10-AS1 - EXOSC10 antisense RNA 1 ncRNA 186.333-2 chr1 110105870 110106348 + 0.666667 NA intron (NR_126382, intron 1 of 3) intron (NR_126382, intron 1 of 3) -6334 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 228.167-22 chr4 89893509 89893859 + 0.666667 NA intron (NM_001371403, intron 1 of 8) intron (NM_001371403, intron 1 of 8) -1170 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 244-23 chr4 74104696 74105369 + 0.666667 NA Intergenic Intergenic -5837 NM_002089 2920 Hs.75765 NM_002089 ENSG00000081041 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 C-X-C motif chemokine ligand 2 protein-coding 211-2 chr1 50177002 50177586 + 0.666667 NA intron (NM_001144774, intron 3 of 6) intron (NM_001144774, intron 3 of 6) 67461 NM_001324213 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 219-35 chr8 105595366 105595731 + 0.666667 NA intron (NM_001362837, intron 4 of 7) L2b|LINE|L2 276005 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 174-49 chr8 131735276 131735790 + 0.666667 NA Intergenic Intergenic -168560 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 191.667-11 chr14 23783802 23784350 + 0.666667 NA Intergenic Intergenic 147712 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 166.333-45 chr5 62973198 62973526 + 0.666667 NA Intergenic AluJr|SINE|Alu 394543 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 318-7 chr13 30114969 30115694 + 0.666667 NA Intergenic Intergenic -6456 NR_046998 100874146 Hs.574116 NR_046998 ENSG00000224511 LINC00365 - long intergenic non-protein coding RNA 365 ncRNA 244-7 chr16 75111453 75111956 + 0.666667 NA TTS (NM_153486) TTS (NM_153486) 5068 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 220.333-7 chr11 91879680 91880010 + 0.666667 NA Intergenic Intergenic -345189 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 242.5-48 chr9 24877916 24878503 + 0.666667 NA Intergenic L1MC1|LINE|L1 -332312 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 181-24 chr2 100695776 100696423 + 0.666667 NA Intergenic Intergenic 92360 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 251.667-34 chr7 94478043 94478554 + 0.666667 NA Intergenic MIRb|SINE|MIR -31511 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 206.5-31 chr2 18299634 18299997 + 0.666667 NA Intergenic Intergenic 260838 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 355.167-3 chr2 45610615 45611335 + 0.666667 NA intron (NM_018079, intron 1 of 20) intron (NM_018079, intron 1 of 20) 292 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 185.833-13 chr2 9387133 9387594 + 0.666667 NA intron (NM_003887, intron 21 of 27) MER58A|DNA|hAT-Charlie 35228 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 187.833-13 chr2 3789036 3789692 + 0.666667 NA intron (NM_001287444, intron 10 of 10) intron (NM_001287444, intron 10 of 10) 82522 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 270.667-5 chr15 80402201 80402865 + 0.666667 NA Intergenic Intergenic -1849 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 264.833-23 chr8 80150360 80151085 + 0.666667 NA intron (NR_105035, intron 1 of 6) THE1B-int|LTR|ERVL-MaLR 20399 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 201-23 chr2 219158188 219158700 + 0.666667 NA intron (NM_024782, intron 1 of 7) intron (NM_024782, intron 1 of 7) 2421 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 342.667-5 chr2 55327887 55328598 + 0.666667 NA intron (NM_001254943, intron 17 of 33) intron (NM_001254943, intron 17 of 33) 45923 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 208.333-41 chr8 111791600 111792089 + 0.666667 NA Intergenic L2a|LINE|L2 415205 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 176.667-44 chr4 122914201 122914730 + 0.666667 NA intron (NM_198041, intron 2 of 4) intron (NM_198041, intron 2 of 4) 8132 NM_007083 11162 Hs.558459 NM_007083 ENSG00000170917 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix hydrolase 6 protein-coding 201.5-10 chr12 61742774 61743181 + 0.666667 NA intron (NM_178539, intron 4 of 4) intron (NM_178539, intron 4 of 4) 449862 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 185.666 chr1 79394665 79395209 + 0.666667 NA Intergenic L1MC1|LINE|L1 -388207 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 163.667-35 chr22 49429298 49429676 + 0.666667 NA intron (NR_110522, intron 1 of 2) intron (NR_110522, intron 1 of 2) 113979 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 174.167-18 chr19 47607707 47608124 + 0.666667 NA promoter-TSS (NM_015711) promoter-TSS (NM_015711) -281 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 BICRA GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein protein-coding 249.5-10 chr3 40996446 40996850 + 0.666667 NA Intergenic Intergenic -202857 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 163.333-3 chr1 152469422 152469818 + 0.666667 NA Intergenic Intergenic -41183 NM_178438 254910 Hs.516410 NM_178438 ENSG00000186207 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 202.333-34 chr8 28947268 28947672 + 0.666667 NA intron (NM_001324393, intron 2 of 11) intron (NM_001324393, intron 2 of 11) 56156 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 208.667-8 chr11 59553944 59554388 + 0.666667 NA Intergenic AluSg|SINE|Alu 39253 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 182-51 chr9 29160516 29160909 + 0.666667 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 51587 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 204.667-37 chr8 28355307 28355778 + 0.666667 NA intron (NM_018660, intron 4 of 9) intron (NM_018660, intron 4 of 9) 16895 NM_001284244 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 164.167-51 chr8 88022948 88023305 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -149111 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 177-17 chr15 41227755 41228272 + 0.666667 NA intron (NM_001286441, intron 1 of 11) AluSq2|SINE|Alu 2744 NM_152596 161829 Hs.307999 NM_152596 ENSG00000178997 EXD1 EXDL1 exonuclease 3'-5' domain containing 1 protein-coding 242.833-18 chr6 10028021 10028662 + 0.666667 NA Intergenic Intergenic -376161 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 186.667-49 chr5 100859737 100860170 + 0.666667 NA intron (NM_005668, intron 3 of 4) (TATT)n|Simple_repeat|Simple_repeat 43329 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 213-12 chr11 89523104 89523490 + 0.666667 NA intron (NM_001143837, intron 2 of 20) AluSc|SINE|Alu -31078 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 237.5-17 chr16 72173699 72174083 + 0.666667 NA Intergenic Intergenic -1441 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 177.833-17 chr19 35935902 35936397 + 0.666667 NA promoter-TSS (NM_024509) promoter-TSS (NM_024509) -225 NM_024509 79414 Hs.143792 NM_024509 ENSG00000126243 LRFN3 FIGLER1|SALM4 leucine rich repeat and fibronectin type III domain containing 3 protein-coding 199.167-11 chr2 20961043 20961572 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 82766 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 165.167-7 chr12 62950625 62951027 + 0.666667 NA Intergenic L1MA2|LINE|L1 -15676 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 196.5-23 chr20 46553881 46554482 + 0.666667 NA Intergenic MER102b|DNA|hAT-Charlie -3527 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 222.333-22 chr4 87387443 87387860 + 0.666667 NA intron (NM_016245, intron 1 of 6) Charlie18a|DNA|hAT-Charlie 3537 NM_016245 51170 Hs.594923 NM_016245 ENSG00000198189 HSD17B11 17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2 hydroxysteroid 17-beta dehydrogenase 11 protein-coding 173.167-2 chr1 172490384 172490837 + 0.666667 NA Intergenic Intergenic 37717 NM_001300760 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 262.333-13 chr17 59337778 59338306 + 0.666667 NA intron (NM_001005404, intron 1 of 4) intron (NM_001005404, intron 1 of 4) 6387 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 201.333-35 chr3 42581547 42582028 + 0.666667 NA promoter-TSS (NM_016305) promoter-TSS (NM_016305) -53 NM_016305 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 202.833-4 chr11 73300581 73301147 + 0.666667 NA Intergenic Intergenic -7412 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding 172.667-50 chr5 145170545 145170990 + 0.666667 NA Intergenic L1PA16|LINE|L1 664575 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 211.667-29 chr3 158644810 158645268 + 0.666667 NA intron (NM_001308164, intron 1 of 18) intron (NM_001308164, intron 1 of 18) 511 NM_001308164 85476 Hs.518355 NM_024996 ENSG00000168827 GFM1 COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1 G elongation factor mitochondrial 1 protein-coding 207.167-3 chr11 2419464 2419900 + 0.666667 NA intron (NM_014555, intron 4 of 23) intron (NM_014555, intron 4 of 23) 3363 NM_014555 29850 Hs.272287 NM_014555 ENSG00000070985 TRPM5 LTRPC5|MTR1 transient receptor potential cation channel subfamily M member 5 protein-coding 257.833-8 chr5 140296702 140297409 + 0.666667 NA intron (NM_002622, intron 2 of 3) intron (NM_002622, intron 2 of 3) 6046 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 227.833-13 chr21 35398547 35399205 + 0.666667 NA intron (NR_073512, intron 2 of 2) intron (NR_073512, intron 2 of 2) 181888 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 226-36 chr4 101034207 101034582 + 0.666667 NA intron (NM_001130691, intron 11 of 12) L2a|LINE|L2 206478 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 188-34 chr3 30628836 30629240 + 0.666667 NA intron (NM_001024847, intron 2 of 7) intron (NM_001024847, intron 2 of 7) 22437 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 165.667-36 chr3 51995498 51996034 + 0.666667 NA intron (NM_000992, intron 1 of 3) CpG 129 NM_000992 6159 Hs.425125 NM_000992 ENSG00000162244 RPL29 HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370 ribosomal protein L29 protein-coding 172.667-52 chr7 40009388 40009800 + 0.666667 NA intron (NM_003718, intron 5 of 13) L1M5|LINE|L1 59234 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 226-19 chr16 56014111 56014701 + 0.666667 NA Intergenic Intergenic -58375 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 230.5-30 chr5 140866154 140866709 + 0.666667 NA 3' UTR (NM_031859, exon 1 of 1) 3' UTR (NM_031859, exon 1 of 1) -1082 NM_031861 56138 Hs.199343 NM_018902 ENSG00000249158 PCDHA11 CNR7|CNRN7|CNRS7|CRNR7|PCDH-ALPHA11 protocadherin alpha 11 protein-coding 236.333-31 chr7 28390216 28390610 + 0.666667 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -22105 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 219.667-28 chr5 157150978 157151522 + 0.666667 NA Intergenic L2a|LINE|L2 -8385 NM_004270 9443 Hs.279902 NM_004270 ENSG00000155868 MED7 ARC34|CRSP33|CRSP9 mediator complex subunit 7 protein-coding 168.333-14 chr12 6757250 6757778 + 0.666667 NA Intergenic Intergenic -4373 NR_026581 8079 Hs.524214 NM_005439 ENSG00000089693 MLF2 NTN4 myeloid leukemia factor 2 protein-coding 178.333-26 chr3 99075877 99076209 + 0.666667 NA Intergenic Intergenic -174348 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 189.167-20 chr17 50157446 50157881 + 0.666667 NA Intergenic AluSz|SINE|Alu -6986 NM_032595 84687 Hs.514323 NM_032595 ENSG00000108819 PPP1R9B PPP1R6|PPP1R9|SPINO|Spn protein phosphatase 1 regulatory subunit 9B protein-coding 272.667-17 chr2 219190708 219191216 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR 12253 NM_001321110 79137 Hs.516707 NM_024293 ENSG00000144567 RETREG2 C2orf17|FAM134A|MAG-2 reticulophagy regulator family member 2 protein-coding 171-5 chr1 163774798 163775142 + 0.666667 NA Intergenic Intergenic -351779 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 192.666-4 chr17 67746049 67746605 + 0.666667 NA Intergenic AluSz6|SINE|Alu 5657 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 172.5-24 chr2 31224023 31224511 + 0.666667 NA intron (NM_001321270, intron 2 of 21) intron (NM_001321270, intron 2 of 21) -6752 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 211.334-6 chr8 101266329 101267096 + 0.666667 NA Intergenic MLT1M|LTR|ERVL-MaLR -60648 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 238.167-29 chr8 114814247 114814906 + 0.666667 NA Intergenic L1PB4|LINE|L1 853437 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 265.167-12 chr7 26663653 26664261 + 0.666667 NA Intergenic Intergenic 26086 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 175.333-13 chr14 57765764 57766090 + 0.666667 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 99072 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 263.833 chr1 31954139 31954921 + 0.666667 NA Intergenic AluJr|SINE|Alu -16162 NM_080391 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 215.333-45 chr8 6135994 6136373 + 0.666667 NA Intergenic Intergenic 270365 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 184.667-24 chr17 41462106 41462517 + 0.666667 NA intron (NM_002278, intron 6 of 6) intron (NM_002278, intron 6 of 6) 5075 NM_002278 3882 Hs.41752 NM_002278 ENSG00000108759 KRT32 HA2|HKA2|KRTHA2|hHa2 keratin 32 protein-coding 166-9 chr10 75969080 75969562 + 0.666667 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 186560 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 165.333-6 chr10 12609047 12609332 + 0.666667 NA intron (NM_001351032, intron 4 of 11) L2b|LINE|L2 30436 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 191-12 chr12 22444592 22445077 + 0.666667 NA Intergenic Intergenic 99363 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 188.333-35 chr6 109791040 109791514 + 0.666667 NA intron (NM_014845, intron 19 of 22) intron (NM_014845, intron 19 of 22) 100056 NM_014845 9896 Hs.529959 NM_014845 ENSG00000112367 FIG4 ALS11|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1 FIG4 phosphoinositide 5-phosphatase protein-coding 241.5-10 chr2 163398642 163399054 + 0.666667 NA Intergenic Intergenic 337160 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 188.667-25 chr2 182767863 182768228 + 0.666667 NA intron (NR_073367, intron 21 of 22) intron (NR_073367, intron 21 of 22) 51788 NR_073367 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 255.833-5 chr11 108345200 108345644 + 0.666667 NA intron (NM_001351834, intron 58 of 63) intron (NM_001351834, intron 58 of 63) 121893 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 204.333-6 chr11 44949215 44949618 + 0.666667 NA intron (NM_001258323, intron 1 of 7) intron (NM_001258323, intron 1 of 7) 744 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 182.833-32 chr5 169887233 169887818 + 0.666667 NA intron (NM_001346304, intron 1 of 3) L1ME4a|LINE|L1 92970 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 167.333-11 chr11 46278216 46278583 + 0.666667 NA intron (NM_052854, intron 1 of 11) CpG 737 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 208.333-13 chr11 134644494 134644846 + 0.666667 NA Intergenic Intergenic -91275 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 188.333-22 chr2 57294127 57294723 + 0.666667 NA Intergenic Intergenic -613226 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 210.333-6 chr10 32904049 32904524 + 0.666667 NA intron (NM_002211, intron 15 of 15) intron (NM_002211, intron 15 of 15) -2814 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 280.667-16 chr8 53723310 53723939 + 0.666667 NA intron (NM_213620, intron 13 of 13) intron (NM_213620, intron 13 of 13) 119418 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 220-10 chr14 52501774 52502371 + 0.666667 NA intron (NM_001160047, intron 9 of 20) intron (NM_001160047, intron 9 of 20) 50433 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 211-31 chr20 45061175 45061782 + 0.666667 NA intron (NM_001352385, intron 11 of 11) Tigger7|DNA|TcMar-Tigger 39649 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 245-2 chr1 117883997 117884410 + 0.666667 NA intron (NM_001135589, intron 10 of 12) L3|LINE|CR1 45418 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 179.833-14 chr17 30476321 30476616 + 0.666667 NA promoter-TSS (NM_001007024) promoter-TSS (NM_001007024) -940 NM_004871 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 166-4 chr1 197388745 197389202 + 0.666667 NA intron (NM_001193640, intron 3 of 9) L1MB3|LINE|L1 120721 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 228.333-4 chr10 27098244 27098945 + 0.666667 NA intron (NM_014915, intron 1 of 33) AluY|SINE|Alu 1904 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 197.667-10 chr11 12038741 12039093 + 0.666667 NA intron (NR_135109, intron 1 of 1) L1PA15|LINE|L1 8042 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 249.833-19 chr9 92133839 92134346 + 0.666667 NA intron (NR_015444, intron 2 of 12) intron (NR_015444, intron 2 of 12) 1258 NR_015444 100128076 Hs.716275 NR_015444 LOC100128076 - protein tyrosine phosphatase pseudogene pseudo 249.666-2 chr10 86432533 86433252 + 0.666667 NA Intergenic L1ME2|LINE|L1 -66097 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 169.333-68 chrX 74769908 74770387 + 0.666667 NA intron (NM_001008537, intron 1 of 3) intron (NM_001008537, intron 1 of 3) 155305 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 253-27 chr4 67125459 67125961 + 0.666667 NA Intergenic Intergenic 296290 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 189-37 chr3 179225727 179226053 + 0.666667 NA intron (NM_006218, intron 16 of 20) intron (NM_006218, intron 16 of 20) 25725 NM_014407 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 181-17 chr16 54193938 54194356 + 0.666667 NA Intergenic Intergenic 76732 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 175.333-24 chr2 3692117 3692481 + 0.666667 NA intron (NM_018436, intron 7 of 11) MER30|DNA|hAT-Charlie -11276 NM_001287444 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 267-19 chr15 70670473 70671061 + 0.666667 NA intron (NM_018003, intron 15 of 18) intron (NM_018003, intron 15 of 18) 31515 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 167.667-20 chr2 166431827 166432264 + 0.666667 NA intron (NR_045628, intron 16 of 25) MIR|SINE|MIR 54926 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 211.667-27 chr3 42072000 42072443 + 0.666667 NA Intergenic Intergenic -14979 NR_146089 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 175.833-4 chr1 198126119 198126593 + 0.666667 NA Intergenic Intergenic -30642 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 171.333-57 chr9 37169336 37169621 + 0.666667 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 48880 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 202.5-45 chr6 18528070 18528748 + 0.666667 NA intron (NR_149116, intron 1 of 7) MIR3|SINE|MIR 5662 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 212.5-25 chr3 176854849 176855364 + 0.666667 NA Intergenic L3|LINE|CR1 -38105 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 164-58 chr8 136393964 136394451 + 0.666667 NA Intergenic L3|LINE|CR1 -136591 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 217.833-14 chr2 142369576 142370118 + 0.666667 NA Intergenic Intergenic -238146 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 243.333-30 chr3 170383543 170384100 + 0.666667 NA intron (NM_001145097, intron 2 of 5) intron (NM_001145097, intron 2 of 5) 24198 NM_001145097 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 203.667-4 chr1 94648948 94649665 + 0.666667 NA intron (NR_160780, intron 3 of 5) L1ME4a|LINE|L1 96594 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 180-18 chr12 124775955 124776248 + 0.666667 NA TTS (NM_001367988) TTS (NM_001367988) 63570 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 207.666-5 chr2 169530694 169531292 + 0.666667 NA intron (NM_024622, intron 13 of 14) L2c|LINE|L2 21291 NM_006063 10324 Hs.50550 NM_006063 ENSG00000239474 KLHL41 KBTBD10|Krp1|SARCOSIN kelch like family member 41 protein-coding 255.167-22 chr20 22587416 22588220 + 0.666667 NA intron (NR_109883, intron 2 of 2) intron (NR_109883, intron 2 of 2) -2328 NM_153675 3170 Hs.155651 NM_021784 ENSG00000125798 FOXA2 HNF3B|TCF3B forkhead box A2 protein-coding 184.5-27 chr20 3677605 3678162 + 0.666667 NA intron (NM_153202, intron 2 of 20) intron (NM_153202, intron 2 of 20) 4807 NM_001282447 80332 Hs.173716 NM_025220 ENSG00000149451 ADAM33 C20orf153|DJ964F7.1 ADAM metallopeptidase domain 33 protein-coding 197.167-4 chr10 73168174 73168647 + 0.666667 NA promoter-TSS (NM_001135752) promoter-TSS (NM_001135752) 291 NM_173348 317662 Hs.408577 NM_173348 ENSG00000138286 FAM149B1 KIAA0974 family with sequence similarity 149 member B1 protein-coding 171.333-40 chr4 150208644 150209111 + 0.666667 NA intron (NR_036614, intron 5 of 16) intron (NR_036614, intron 5 of 16) 130432 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 237.667-4 chr11 98426471 98427031 + 0.666667 NA Intergenic L1MA9|LINE|L1 -594198 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 220.667-24 chr20 32149095 32149518 + 0.666667 NA intron (NM_001363731, intron 9 of 17) intron (NM_001363731, intron 9 of 17) 39578 NM_001363731 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 177.333-42 chr9 76364145 76364440 + 0.666667 NA Intergenic LTR9D|LTR|ERV1 30134 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 184.833-6 chr10 83707537 83707945 + 0.666667 NA Intergenic Intergenic -30652 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 190.667-2 chr1 116491486 116492066 + 0.666667 NA Intergenic (ATGC)n|Simple_repeat|Simple_repeat -12950 NR_125972 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 175.833-17 chr15 63536571 63536949 + 0.666667 NA intron (NR_046342, intron 3 of 15) AluYh3|SINE|Alu 32167 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 214.333-20 chr2 58848882 58849377 + 0.666667 NA intron (NR_033873, intron 2 of 13) AluSz6|SINE|Alu 328376 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 182.167-25 chr5 61925032 61925456 + 0.666667 NA Intergenic Intergenic -189546 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 193-8 chr12 9699173 9699658 + 0.666667 NA non-coding (NR_036693, exon 4 of 4) non-coding (NR_036693, exon 4 of 4) 29702 NM_001197317 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 275.833-21 chr9 84314613 84315105 + 0.666667 NA intron (NM_022127, intron 2 of 18) AluSc8|SINE|Alu 25899 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 233-7 chr12 116689219 116689648 + 0.666667 NA Intergenic MIR1_Amn|SINE|MIR 48636 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 285.667-2 chr1 150977216 150977970 + 0.666667 NA Intergenic Intergenic -2590 NM_181746 29956 Hs.744017 NM_013384 ENSG00000143418 CERS2 L3|LASS2|SP260|TMSG1 ceramide synthase 2 protein-coding 322.167 chr1 37514159 37515295 + 0.666667 NA promoter-TSS (NM_022756) promoter-TSS (NM_022756) 39 NM_001270876 64769 Hs.17118 NM_022756 ENSG00000163875 MEAF6 C1orf149|CENP-28|EAF6|NY-SAR-91 MYST/Esa1 associated factor 6 protein-coding 184.167-14 chr16 12126498 12126924 + 0.666667 NA intron (NM_032167, intron 12 of 20) intron (NM_032167, intron 12 of 20) 149977 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 206.167-3 chr10 18790120 18790592 + 0.666667 NA Intergenic Intergenic 130925 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 179.5-40 chr5 140303054 140303380 + 0.666667 NA promoter-TSS (NM_002622) promoter-TSS (NM_002622) -116 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 177-30 chr4 170850974 170851284 + 0.666667 NA Intergenic L1MC4a|LINE|L1 -107394 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 244.167-14 chr2 123415328 123415974 + 0.666667 NA Intergenic L1MD1|LINE|L1 -342170 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 186-3 chr1 230920266 230920596 + 0.666667 NA intron (NM_024525, intron 17 of 22) intron (NM_024525, intron 17 of 22) 45585 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 194.833-2 chr11 22323340 22323803 + 0.666667 NA Intergenic L2c|LINE|L2 -14810 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 227.5-35 chr8 123822155 123822770 + 0.666667 NA Intergenic Intergenic -29525 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 254.333-4 chr11 34331853 34332478 + 0.666667 NA intron (NM_145804, intron 1 of 16) L2c|LINE|L2 25845 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 218.333-7 chr14 64497988 64498385 + 0.666667 NA promoter-TSS (NM_001354687) promoter-TSS (NM_001354687) -194 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 166.333-54 chr9 37049971 37050453 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -15944 NR_104000 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 283.333-18 chr7 116903436 116904042 + 0.666667 NA intron (NM_006136, intron 4 of 9) intron (NM_006136, intron 4 of 9) 41152 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 195-28 chr20 51888945 51889447 + 0.666667 NA Intergenic Intergenic -26283 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 233.5-29 chr3 181532501 181533077 + 0.666667 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -77545 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 179-29 chr5 66775749 66776074 + 0.666667 NA intron (NM_001290228, intron 2 of 4) intron (NM_001290228, intron 2 of 4) -52862 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 169.333-4 chr1 108660862 108661188 + 0.666667 NA promoter-TSS (NM_001102592) promoter-TSS (NM_001102592) 68 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 236.5-15 chr17 75222742 75223134 + 0.666667 NA intron (NM_001330472, intron 7 of 17) AluY|SINE|Alu 17259 NM_024844 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 197.167-20 chr2 13337716 13338246 + 0.666667 NA Intergenic L1PA16|LINE|L1 -330968 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 268-30 chr4 54969757 54970249 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR 155592 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 171.333-35 chr3 43217206 43217505 + 0.666667 NA Intergenic Intergenic -69157 NM_001100594 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 228.167-7 chr11 126256357 126256991 + 0.666667 NA exon (NM_001330446, exon 7 of 9) exon (NM_001330446, exon 7 of 9) 12221 NM_003139 6734 Hs.368376 NM_003139 ENSG00000182934 SRPRA DP|SRPR|Sralpha SRP receptor subunit alpha protein-coding 179-37 chr6 54216909 54217352 + 0.666667 NA 3' UTR (NM_001281746, exon 12 of 12) 3' UTR (NM_001281746, exon 12 of 12) -91311 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 220.333-14 chr2 46591112 46591543 + 0.666667 NA intron (NM_173074, intron 5 of 6) L1ME4a|LINE|L1 -11089 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 228.5-36 chr9 34533207 34533743 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -10485 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 237.167-14 chr2 238264092 238264667 + 0.666667 NA intron (NM_022817, intron 9 of 22) intron (NM_022817, intron 9 of 22) 24231 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian regulator 2 protein-coding 172.833-19 chr3 12557088 12557449 + 0.666667 NA intron (NM_001271707, intron 1 of 6) CpG 181 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 234.833-22 chr5 104255753 104256321 + 0.666667 NA Intergenic L1M3c|LINE|L1 -693248 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 202.333-22 chr22 25905401 25905997 + 0.666667 NA intron (NM_001318245, intron 31 of 43) MIR3|SINE|MIR 163511 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 169.667-19 chr11 67513528 67514008 + 0.666667 NA Intergenic L1MC3|LINE|L1 -5040 NM_005851 10263 Hs.523835 NM_005851 ENSG00000167797 CDK2AP2 DOC-1R|p14 cyclin dependent kinase 2 associated protein 2 protein-coding 180.167-24 chr8 107360043 107360431 + 0.666667 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -23722 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 248.833-27 chr7 36645971 36646420 + 0.666667 NA intron (NM_001177507, intron 3 of 19) intron (NM_001177507, intron 3 of 19) -46075 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 163.667-14 chr12 113968397 113968810 + 0.666667 NA Intergenic Intergenic -2278 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 227.333-35 chr7 100429296 100429722 + 0.666667 NA promoter-TSS (NM_017984) promoter-TSS (NM_017984) 62 NM_001363486 56257 Hs.178011 NM_019606 ENSG00000146834 MEPCE BCDIN3 methylphosphate capping enzyme protein-coding 198.667-17 chr16 81281925 81282524 + 0.666667 NA intron (NM_017429, intron 8 of 10) AluSz6|SINE|Alu -32742 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 210.667-46 chr7 27207232 27207785 + 0.666667 NA TTS (NR_037843) TTS (NR_037843) 7087 NR_037843 100316868 Hs.199486 NR_037843 HOTTIP HOXA-AS6|HOXA13-AS1|NCRNA00213 HOXA distal transcript antisense RNA ncRNA 247.333-9 chr19 8505846 8506337 + 0.666667 NA Intergenic CpG -3451 NM_032152 84106 Hs.465812 NM_032152 ENSG00000133246 PRAM1 PML-RAR|PRAM-1 PML-RARA regulated adaptor molecule 1 protein-coding 231.667-31 chr8 20863010 20863571 + 0.666667 NA Intergenic Intergenic -90343 NR_130773 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 215.167-36 chrX 150033006 150033328 + 0.666667 NA Intergenic Intergenic 94619 NR_027456 100272228 Hs.496916 NR_027456 ENSG00000235703 LINC00894 - long intergenic non-protein coding RNA 894 ncRNA 211.333-47 chr8 28636391 28636923 + 0.666667 NA Intergenic Intergenic 64807 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 163.833-7 chr11 118925996 118926455 + 0.666667 NA Intergenic Intergenic 15517 NR_039713 100616376 NR_039713 ENSG00000264211 MIR4492 mir-4492 microRNA 4492 ncRNA 224-35 chr4 109750180 109750672 + 0.666667 NA intron (NM_001331035, intron 7 of 11) MIRb|SINE|MIR -20356 NM_030821 81579 Hs.389452 NM_030821 ENSG00000123739 PLA2G12A GXII|PLA2G12|ROSSY phospholipase A2 group XIIA protein-coding 189.333-44 chrX 65588136 65588616 + 0.666667 NA Intergenic Intergenic -35955 NR_033742 83957 Hs.652967 NR_033742 ENSG00000227942 FRMD8P1 - FERM domain containing 8 pseudogene 1 pseudo 207.667-23 chr2 98440029 98440563 + 0.666667 NA Intergenic Intergenic -4291 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 180-39 chr2 169171986 169172316 + 0.666667 NA intron (NM_004525, intron 57 of 78) intron (NM_004525, intron 57 of 78) 91044 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 225.167-32 chr9 97954287 97954678 + 0.666667 NA Intergenic Intergenic -9630 NM_018437 55363 Hs.176626 NM_018437 ENSG00000136929 HEMGN CT155|EDAG|EDAG-1|NDR hemogen protein-coding 210.667-10 chr11 103098226 103098861 + 0.666667 NA Intergenic Intergenic -6383 NM_001318739 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 239.333-29 chr6 140857657 140858088 + 0.666667 NA Intergenic Intergenic 174058 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 178.334-5 chr2 158439794 158440396 + 0.666667 NA intron (NM_138803, intron 1 of 13) AluJo|SINE|Alu 16658 NM_001301684 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 182.833 chr1 32250489 32251153 + 0.666667 NA promoter-TSS (NM_001330468) promoter-TSS (NM_001330468) -444 NM_001330468 3932 Hs.470627 NM_005356 ENSG00000182866 LCK IMD22|LSK|YT16|p56lck|pp58lck LCK proto-oncogene, Src family tyrosine kinase protein-coding 203.667-25 chr2 96209795 96210486 + 0.666667 NA intron (NR_046322, intron 1 of 3) HUERS-P1-int|LTR|ERV1 -1305 NM_020151 56910 Hs.469331 NM_020151 ENSG00000084090 STARD7 GTT1 StAR related lipid transfer domain containing 7 protein-coding 166.167-32 chr6 26534800 26535213 + 0.666667 NA Intergenic Intergenic -3360 NM_006353 10473 Hs.236774 NM_006353 ENSG00000182952 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 212.834-4 chr20 4304294 4304811 + 0.666667 NA Intergenic Intergenic -55265 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 231.833-16 chr5 112757050 112757603 + 0.666667 NA intron (NM_001354895, intron 2 of 15) intron (NM_001354895, intron 2 of 15) 19441 NM_001354898 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 171.5-3 chr1 231712277 231712808 + 0.666667 NA intron (NM_001164544, intron 3 of 8) L1MB4|LINE|L1 85727 NM_001164556 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 191-51 chrX 30196579 30196954 + 0.666667 NA Intergenic Intergenic -18797 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 173.5-17 chr14 23932341 23932698 + 0.666667 NA Intergenic Intergenic -21251 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 200-24 chr2 119615865 119616372 + 0.666667 NA intron (NR_073132, intron 15 of 24) L1MA6|LINE|L1 -63049 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 164-51 chr6 61783947 61784389 + 0.666667 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 210038 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 179-32 chr5 140854628 140855024 + 0.666667 NA TTS (NM_014005) TTS (NM_014005) -1071 NM_031859 56139 Hs.199343 NM_018901 ENSG00000250120 PCDHA10 CNR8|CNRN8|CNRS8|CRNR8|PCDH-ALPHA10 protocadherin alpha 10 protein-coding 204.333-7 chr11 110642093 110642579 + 0.666667 NA intron (NM_020809, intron 3 of 15) L1PA16|LINE|L1 69489 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 237-25 chr3 96241747 96242179 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -118001 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 192.333-7 chr11 103584052 103584593 + 0.666667 NA Intergenic Intergenic -265584 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 176.167-16 chr15 56670844 56671288 + 0.666667 NA intron (NM_001002843, intron 12 of 20) L1PA12|LINE|L1 63020 NM_001002843 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 177.667-16 chr15 61904744 61905200 + 0.666667 NA intron (NM_001018088, intron 66 of 81) L1MA4|LINE|L1 155475 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 165.167-29 chr4 48698118 48698457 + 0.666667 NA intron (NM_015030, intron 2 of 63) intron (NM_015030, intron 2 of 63) 82012 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 331.333-7 chr3 158519969 158520856 + 0.666667 NA intron (NM_001271838, intron 7 of 9) intron (NM_001271838, intron 7 of 9) -6296 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 216.5-36 chr5 92662993 92663414 + 0.666667 NA Intergenic Intergenic 908140 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 201.333-43 chr5 83187444 83187877 + 0.666667 NA intron (NM_001318012, intron 3 of 7) intron (NM_001318012, intron 3 of 7) 110113 NM_022406 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 175.667-50 chr7 20278393 20278658 + 0.666667 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -18183 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 173.333-12 chr15 98296699 98297315 + 0.666667 NA Intergenic AluJb|SINE|Alu 34551 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 220-2 chr1 189442056 189442465 + 0.666667 NA Intergenic Intergenic 1033750 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 282.333 chr10 45575424 45576154 + 0.666667 NA intron (NM_145021, intron 1 of 6) LTR7|LTR|ERV1 19117 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 211.333-25 chr3 17814305 17814825 + 0.666667 NA Intergenic MIR|SINE|MIR 71621 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 164.333-48 chr7 88950136 88950452 + 0.666667 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -154557 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 189.667-53 chr8 3504443 3504863 + 0.666667 NA intron (NM_033225, intron 10 of 69) intron (NM_033225, intron 10 of 69) -776202 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 192.333-21 chr17 58893888 58894345 + 0.666667 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 138247 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 228.167-26 chr8 141956597 141957078 + 0.666667 NA Intergenic L1ME3B|LINE|L1 -170524 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 188.833-32 chr5 78489290 78489684 + 0.666667 NA intron (NM_005779, intron 4 of 4) AluJo|SINE|Alu 128870 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 267.833-11 chr6 69997238 69997975 + 0.666667 NA intron (NM_001858, intron 11 of 50) L1M4a1|LINE|L1 131050 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 168.833-20 chr6 84624341 84624882 + 0.666667 NA Intergenic Charlie19a|DNA|hAT-Charlie -64847 NR_125875 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 219.5 chr1 203899051 203899750 + 0.666667 NA Intergenic LTR37B|LTR|ERV1 37553 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 176.833-40 chr8 94846627 94847020 + 0.666667 NA intron (NR_073445, intron 10 of 27) L1ME3B|LINE|L1 23533 NR_073444 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 275-16 chr2 123105381 123105888 + 0.666667 NA Intergenic L1M1|LINE|L1 -32153 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 237.5-8 chr12 29032025 29032568 + 0.666667 NA Intergenic Intergenic -116982 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 165.5-25 chr2 55431951 55432249 + 0.666667 NA Intergenic Intergenic -12244 NM_018084 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 225-16 chr2 70290442 70290990 + 0.666667 NA intron (NM_003096, intron 1 of 3) AluSp|SINE|Alu 2508 NM_001317167 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 165.667-32 chr2 225569637 225569942 + 0.666667 NA intron (NM_001371273, intron 4 of 7) MIRb|SINE|MIR 168903 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 169.833 chr10 30189164 30189468 + 0.666667 NA Intergenic Intergenic -22536 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 292.833-8 chr3 80345416 80345996 + 0.666667 NA Intergenic L1M1|LINE|L1 -419191 NR_147143 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 227.5-6 chr1 65504500 65505153 + 0.666667 NA intron (NM_001003679, intron 2 of 19) L1MC3|LINE|L1 -20825 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 228.667-38 chr5 44929179 44929538 + 0.666667 NA Intergenic L1MA6|LINE|L1 120411 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 193.5-22 chr2 715572 716075 + 0.666667 NA Intergenic Intergenic -38417 NM_152834 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 166.667-35 chr3 78977911 78978241 + 0.666667 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 41383 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 169.667-53 chr6 123928466 123929085 + 0.666667 NA intron (NM_001040214, intron 1 of 6) L1ME3A|LINE|L1 124910 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 220.667-21 chr2 52035230 52035704 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -335181 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 308.667-19 chr9 100460911 100461454 + 0.666667 NA intron (NM_001198812, intron 1 of 9) intron (NM_001198812, intron 1 of 9) -11967 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 174-37 chr5 13882682 13883089 + 0.666667 NA intron (NM_001369, intron 20 of 78) intron (NM_001369, intron 20 of 78) 61595 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 254-15 chr2 61142134 61142758 + 0.666667 NA non-coding (NR_036496, exon 2 of 2) non-coding (NR_036496, exon 2 of 2) 2529 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 173-23 chr17 58441763 58442197 + 0.666667 NA intron (NM_001080439, intron 5 of 5) MLT1J-int|LTR|ERVL-MaLR -24398 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 165.667-54 chr8 107736985 107737469 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -239309 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 208.167-2 chr1 25622471 25622881 + 0.666667 NA intron (NM_020379, intron 1 of 11) intron (NM_020379, intron 1 of 11) 5208 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 196.333-39 chr6 36091601 36092003 + 0.666667 NA intron (NM_001315, intron 8 of 11) intron (NM_001315, intron 8 of 11) -38711 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 316.667-6 chr2 162296724 162297370 + 0.666667 NA intron (NM_022168, intron 3 of 15) intron (NM_022168, intron 3 of 15) 21637 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 196.333-47 chr7 50508130 50508624 + 0.666667 NA intron (NM_001242889, intron 4 of 12) intron (NM_001242889, intron 4 of 12) -23382 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 173.167-45 chr9 98816227 98816694 + 0.666667 NA intron (NM_024642, intron 1 of 9) Charlie18a|DNA|hAT-Charlie 8790 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 224.667-44 chr9 111127243 111127731 + 0.666667 NA Intergenic AluSx1|SINE|Alu -88489 NM_001351399 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 222.833-3 chr1 70159597 70160169 + 0.666667 NA intron (NM_017768, intron 9 of 14) intron (NM_017768, intron 9 of 14) 45696 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 236-27 chr7 101791045 101791750 + 0.666667 NA Intergenic Intergenic -24610 NM_001202543 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 193.334-2 chr1 51881131 51881630 + 0.666667 NA Intergenic AluJb|SINE|Alu -2443 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 220.167 chr1 89843162 89843655 + 0.666667 NA intron (NM_018103, intron 1 of 2) CpG 21469 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 164.167-20 chr17 54304703 54305130 + 0.666667 NA Intergenic Intergenic 481989 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 193.667-21 chr15 65190633 65191094 + 0.666667 NA Intergenic Tigger15a|DNA|TcMar-Tigger -5521 NM_006660 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 211.667-18 chr2 88074735 88075113 + 0.666667 NA intron (NM_001330364, intron 1 of 8) intron (NM_001330364, intron 1 of 8) 7099 NM_001330364 150572 Hs.516176 NM_198274 ENSG00000115593 SMYD1 BOP|KMT3D|ZMYND18|ZMYND22 SET and MYND domain containing 1 protein-coding 187.667-11 chr11 132165505 132165905 + 0.666667 NA intron (NM_016522, intron 2 of 6) intron (NM_016522, intron 2 of 6) -118597 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 169-30 chr2 128570760 128571243 + 0.666667 NA Intergenic HSMAR2|DNA|TcMar-Mariner -252133 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 200.5-8 chr12 82686521 82687037 + 0.666667 NA promoter-TSS (NM_001320321) promoter-TSS (NM_001320321) -127 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 232.333-15 chr2 45500442 45500871 + 0.666667 NA intron (NM_018079, intron 14 of 20) AluJb|SINE|Alu 110611 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 176.333-5 chr10 110567885 110568375 + 0.666667 NA intron (NM_005445, intron 1 of 28) CpG 439 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 190.333-14 chr14 50590747 50591130 + 0.666667 NA intron (NM_015915, intron 2 of 13) intron (NM_015915, intron 2 of 13) 30913 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 189.333-4 chr11 29125474 29125823 + 0.666667 NA Intergenic MER77B|LTR|ERVL -468765 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 264.333-8 chr14 56742129 56742824 + 0.666667 NA Intergenic Intergenic 63191 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 167.167-36 chr8 129288975 129289383 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -47939 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 180-26 chr17 50332440 50332871 + 0.666667 NA Intergenic AluSz6|SINE|Alu -13471 NR_110010 64132 Hs.463416 NM_022167 ENSG00000015532 XYLT2 PXYLT2|SOS|XT-II|XT2|xylT-II xylosyltransferase 2 protein-coding 187.167-15 chr16 31538129 31538476 + 0.666667 NA Intergenic L1M5|LINE|L1 10325 NM_001318222 51327 Hs.274309 NM_016633 ENSG00000169877 AHSP EDRF|ERAF alpha hemoglobin stabilizing protein protein-coding 188.5-9 chr11 35821211 35821645 + 0.666667 NA Intergenic Intergenic -122553 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 225.333-39 chr9 12102884 12103294 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -590296 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 237.833-7 chr16 66886686 66887375 + 0.666667 NA 3' UTR (NM_001329933, exon 3 of 3) 3' UTR (NM_001329933, exon 3 of 3) 6515 NM_001329932 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 171-17 chr13 80249506 80249945 + 0.666667 NA Intergenic Intergenic 89934 NM_001318538 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 164.667-39 chr4 161856736 161857209 + 0.666667 NA intron (NM_001128428, intron 4 of 14) L2a|LINE|L2 -165761 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 201.5-41 chrX 119610045 119610679 + 0.666667 NA Intergenic Intergenic -4479 NM_001173487 55922 Hs.437084 NM_017544 ENSG00000186416 NKRF ITBA4|NRF NFKB repressing factor protein-coding 207.333-46 chr7 55080099 55080816 + 0.666667 NA intron (NM_001346941, intron 1 of 21) L1MA8|LINE|L1 -29382 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 177.333-43 chr9 105364225 105364710 + 0.666667 NA intron (NM_001330731, intron 9 of 15) intron (NM_001330731, intron 9 of 15) -83567 NM_001287191 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 195.5-24 chr3 163108320 163108822 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR 194730 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 210.333-7 chr10 59647799 59648235 + 0.666667 NA Intergenic Intergenic 61874 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 166.833-2 chr1 221839796 221840372 + 0.666667 NA intron (NR_125989, intron 2 of 3) intron (NR_125989, intron 2 of 3) 582 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 236.667-35 chr8 56075239 56075674 + 0.666667 NA promoter-TSS (NM_001146227) promoter-TSS (NM_001146227) 864 NR_149110 105375847 NR_149110 ENSG00000253603 CERNA3 CTA competing endogenous lncRNA 3 for miR-645 ncRNA 182.833-24 chr21 31219955 31220450 + 0.666667 NA intron (NM_001353686, intron 8 of 27) L2a|LINE|L2 -59262 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 167.5-26 chr3 14030894 14031330 + 0.666667 NA intron (NR_002223, intron 1 of 2) MER4-int|LTR|ERV1 93758 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 212-40 chr5 156121071 156121516 + 0.666667 NA Intergenic MIR|SINE|MIR -205464 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 196.833-24 chr6 83054269 83054651 + 0.666667 NA intron (NR_146807, intron 2 of 10) intron (NR_146807, intron 2 of 10) 11381 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 170.667-54 chr8 129128940 129129237 + 0.666667 NA Intergenic Intergenic 112152 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 170.333-14 chr12 84329885 84330251 + 0.666667 NA Intergenic Intergenic 582731 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 189.333-20 chr17 71283178 71283564 + 0.666667 NA Intergenic (T)n|Simple_repeat|Simple_repeat -81192 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 248-23 chr2 200578592 200579256 + 0.666667 NA intron (NM_152524, intron 8 of 8) MER20|DNA|hAT-Charlie -7090 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 187.667-37 chr5 123959610 123960049 + 0.666667 NA Intergenic L1MC4|LINE|L1 414412 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 216.167-17 chr14 69535202 69535662 + 0.666667 NA Intergenic Intergenic 39439 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 234.666-7 chr4 151147637 151148321 + 0.666667 NA exon (NM_001243349, exon 11 of 20) exon (NM_001243349, exon 11 of 20) 27573 NM_001128924 152503 Hs.744983 NM_001009555 ENSG00000109686 SH3D19 EBP|EVE1|Eve-1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 178.333-31 chr6 2046701 2047080 + 0.666667 NA intron (NM_001253846, intron 4 of 10) intron (NM_001253846, intron 4 of 10) 129101 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 175.5-57 chr8 86304942 86305506 + 0.666667 NA Intergenic Intergenic -37323 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 176.333-29 chr5 141550051 141550460 + 0.666667 NA intron (NM_005219, intron 17 of 27) L1MC4|LINE|L1 -8056 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 166.667-48 chr6 164069127 164069410 + 0.666667 NA Intergenic Intergenic -397784 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 262.334-16 chr8 122648605 122649258 + 0.666667 NA Intergenic Intergenic 45175 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 179.167-23 chr7 29973568 29973905 + 0.666667 NA intron (NM_001145514, intron 1 of 7) intron (NM_001145514, intron 1 of 7) 16065 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 173-38 chr7 143378605 143379177 + 0.666667 NA TTS (NR_161353) TTS (NR_161353) 2134 NR_161353 100507507 Hs.131743 NR_161353 LOC100507507 - uncharacterized LOC100507507 ncRNA 172.667-27 chr2 4252333 4252708 + 0.666667 NA Intergenic Intergenic 278359 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 185.167-31 chr9 83489709 83490181 + 0.666667 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) -22203 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 188.667-42 chr5 172768047 172768377 + 0.666667 NA 3' UTR (NM_004417, exon 4 of 4) 3' UTR (NM_004417, exon 4 of 4) 2983 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 174.333-10 chr12 107716470 107716763 + 0.666667 NA Intergenic AluJb|SINE|Alu -19939 NR_120474 101929162 Hs.667028 NR_120474 ENSG00000258136 LOC101929162 - uncharacterized LOC101929162 ncRNA 222.667-11 chr13 37000251 37000853 + 0.666667 NA promoter-TSS (NM_181503) promoter-TSS (NM_181503) -234 NM_181503 11340 Hs.294041 NM_181503 ENSG00000120699 EXOSC8 CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 237-8 chr12 118346155 118346864 + 0.666667 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 13196 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 194.333-26 chr2 221294251 221294755 + 0.666667 NA Intergenic MLT1H2|LTR|ERVL-MaLR 277801 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 186.667-33 chr19 11923761 11924062 + 0.666667 NA Intergenic Intergenic -1157 NM_001271848 90592 Hs.528486 NM_144566 ENSG00000196757 ZNF700 - zinc finger protein 700 protein-coding 164.167-27 chr2 212528639 212528925 + 0.666667 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 9846 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 204.667-10 chr14 23902216 23902755 + 0.666667 NA Intergenic MIR|SINE|MIR -51285 NM_001282991 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 242.5-23 chr2 23711605 23712219 + 0.666667 NA Intergenic MIRb|SINE|MIR 215211 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 171.833-29 chr8 124945550 124945881 + 0.666667 NA non-coding (NR_027321, exon 2 of 4) non-coding (NR_027321, exon 2 of 4) 3707 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 243.333-21 chr19 52028465 52029094 + 0.666667 NA promoter-TSS (NM_025040) promoter-TSS (NM_025040) -400 NM_025040 80110 Hs.292336 NM_025040 ENSG00000142556 ZNF614 - zinc finger protein 614 protein-coding 267.167-2 chr11 11631575 11632145 + 0.666667 NA Intergenic L1M5|LINE|L1 -9855 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 279.834-8 chr3 3272917 3273459 + 0.666667 NA Intergenic Tigger2a|DNA|TcMar-Tigger -93471 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 221.833 chr1 35979479 35979832 + 0.666667 NA intron (NM_024852, intron 5 of 18) L1MC4a|LINE|L1 48550 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 169.333-36 chr2 178113351 178113865 + 0.666667 NA intron (NM_001365578, intron 1 of 9) MIRb|SINE|MIR 1171 NM_001365579 129831 Hs.377257 NM_152945 ENSG00000155636 RBM45 DRB1|RB-1 RNA binding motif protein 45 protein-coding 259-6 chr1 241625886 241626436 + 0.666667 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 9769 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 180.333-53 chr8 109822843 109823251 + 0.666667 NA Intergenic L1MA2|LINE|L1 -131256 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 181.667-11 chr12 25251223 25251742 + 0.666667 NA promoter-TSS (NM_033360) promoter-TSS (NM_033360) -553 NM_033360 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 190.667-40 chr3 151527141 151527601 + 0.666667 NA Intergenic Intergenic 38624 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 244.667-21 chr3 27762603 27763195 + 0.666667 NA Intergenic Intergenic -34689 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 165.167-32 chr4 80850728 80851052 + 0.666667 NA intron (NM_001206997, intron 4 of 6) L2|LINE|L2 -179818 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 234-23 chr2 159536200 159536773 + 0.666667 NA intron (NM_001329858, intron 2 of 36) Charlie21a|DNA|hAT-Charlie -78808 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 163.667-25 chr19 57597346 57597634 + 0.666667 NA Intergenic Intergenic -2395 NR_135923 348327 Hs.97111 NM_020880 ENSG00000183647 ZNF530 - zinc finger protein 530 protein-coding 173.667-36 chr3 167809629 167810085 + 0.666667 NA intron (NM_001122752, intron 6 of 8) intron (NM_001122752, intron 6 of 8) 74134 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 185-45 chr9 77963740 77964053 + 0.666667 NA intron (NM_002072, intron 1 of 6) HSMAR2|DNA|TcMar-Mariner 67915 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 218-30 chr3 121225924 121226301 + 0.666667 NA intron (NR_145516, intron 12 of 28) MER101-int|LTR|ERV1 176472 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 178.333-25 chr22 32051487 32051952 + 0.666667 NA intron (NM_000343, intron 2 of 14) (AAC)n|Simple_repeat|Simple_repeat -7451 NM_001256314 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 251-18 chr20 22635558 22636102 + 0.666667 NA Intergenic Intergenic -28313 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 211.333-46 chr7 17408189 17408684 + 0.666667 NA intron (NR_110015, intron 1 of 2) MLT1E1A|LTR|ERVL-MaLR 33519 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 197.5-22 chr3 32261501 32262000 + 0.666667 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) 23070 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 192.667-20 chr2 139294019 139294395 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR 396883 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 258.667-21 chr4 140326200 140326620 + 0.666667 NA intron (NR_033939, intron 2 of 4) intron (NR_033939, intron 2 of 4) -17033 NM_001153446 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 193.333-44 chr3 51017144 51017756 + 0.666667 NA intron (NM_004947, intron 5 of 52) L1M1|LINE|L1 342370 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 309.333-5 chr10 88553780 88554646 + 0.666667 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 29105 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 191.667-15 chr15 94316276 94316665 + 0.666667 NA intron (NM_018349, intron 3 of 21) MIR|SINE|MIR 18269 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 206.667-23 chr17 78083403 78083775 + 0.666667 NA intron (NM_018996, intron 12 of 20) MER105|DNA|hAT-Charlie 28210 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 330.333-4 chr3 9274716 9275309 + 0.666667 NA Intergenic LTR1D1|LTR|ERV1 25256 NR_146969 101927440 NR_146969 ENSG00000235830 SRGAP3-AS4 - SRGAP3 antisense RNA 4 ncRNA 210.333-38 chr9 26093816 26094425 + 0.666667 NA intron (NM_001004352, intron 2 of 6) L1MEc|LINE|L1 27445 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 217.333-35 chr6 6220308 6220737 + 0.666667 NA intron (NM_000129, intron 8 of 14) intron (NM_000129, intron 8 of 14) -51087 NR_107007 102466866 NR_107007 ENSG00000263572 MIR7853 hsa-mir-7853 microRNA 7853 ncRNA 191-23 chr17 62421136 62421600 + 0.666667 NA Intergenic AluSz|SINE|Alu -2517 NM_181725 339175 Hs.381204 NM_181725 ENSG00000087995 METTL2A METTL2 methyltransferase like 2A protein-coding 253.667-25 chr2 216109088 216109759 + 0.666667 NA promoter-TSS (NM_021141) promoter-TSS (NM_021141) 75 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 174-15 chr13 72839774 72840315 + 0.666667 NA intron (NR_146206, intron 9 of 16) intron (NR_146206, intron 9 of 16) 57911 NM_001349655 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 247-30 chr7 42253074 42253552 + 0.666667 NA Intergenic Charlie17b|DNA|hAT-Charlie -16104 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 230-4 chr1 177683974 177684570 + 0.666667 NA Intergenic L1MEc|LINE|L1 -16252 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 208.5-13 chr15 90968642 90968972 + 0.666667 NA intron (NM_001267580, intron 12 of 12) intron (NM_001267580, intron 12 of 12) 2438 NR_051984 100507118 Hs.366401 NR_051984 ENSG00000258725 PRC1-AS1 - PRC1 antisense RNA 1 ncRNA 221.5-5 chr10 35120096 35120458 + 0.666667 NA Intergenic AluSz6|SINE|Alu -6564 NM_001881 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 169.333-65 chr9 28132358 28132812 + 0.666667 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -558719 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 188.667-53 chr9 34674968 34675301 + 0.666667 NA Intergenic AluJb|SINE|Alu -9078 NM_001320037 730098 Hs.459590 NM_001320037 ENSG00000187186 LOC730098 - uncharacterized LOC730098 protein-coding 178.167-32 chrX 97452226 97452555 + 0.666667 NA intron (NM_006729, intron 26 of 26) intron (NM_006729, intron 26 of 26) 112145 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 184.833-11 chr12 47020530 47020923 + 0.666667 NA Intergenic Intergenic -58877 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 273.5-15 chr2 192656889 192657746 + 0.666667 NA Intergenic Intergenic -92528 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 224.167-10 chr16 22026609 22027038 + 0.666667 NA intron (NM_001164579, intron 1 of 2) intron (NM_001164579, intron 1 of 2) 18712 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 MOSMO ATTHOG|BC030336|C16orf52 modulator of smoothened protein-coding 170.333-25 chr16 58173106 58173595 + 0.666667 NA intron (NM_001896, intron 5 of 11) intron (NM_001896, intron 5 of 11) 24756 NM_001896 1459 Hs.82201 NM_001896 ENSG00000070770 CSNK2A2 CK2A2|CK2alpha'|CSNK2A1 casein kinase 2 alpha 2 protein-coding 168.5-25 chr2 161156294 161156573 + 0.666667 NA intron (NM_004180, intron 1 of 7) L1M6|LINE|L1 -3995 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 210.5-6 chr11 62674991 62675667 + 0.666667 NA Intergenic AluSq2|SINE|Alu -3546 NR_160410 79081 Hs.9061 NM_024099 ENSG00000162194 LBHD1 C11orf48 LBH domain containing 1 protein-coding 235-19 chr2 209425267 209425672 + 0.666667 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 1422 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 190.667-58 chr9 25096334 25096733 + 0.666667 NA Intergenic Intergenic -550636 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 229.833-14 chr2 160161710 160162373 + 0.666667 NA intron (NM_001282390, intron 6 of 13) L1ME3D|LINE|L1 38231 NM_001282389 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 205.333-25 chr20 53948325 53948652 + 0.666667 NA intron (NM_001366297, intron 8 of 8) MER102a|DNA|hAT-Charlie -72779 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 222.833-5 chr11 69641271 69641956 + 0.666667 NA intron (NM_053056, intron 1 of 4) CpG-4621 508 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 210-30 chr3 68276896 68277402 + 0.666667 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -223488 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 296.167-19 chr9 74390858 74391315 + 0.666667 NA Intergenic L1MB2|LINE|L1 19555 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 232-30 chr3 105484451 105484847 + 0.666667 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 117740 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 222-14 chr14 60801837 60802210 + 0.666667 NA intron (NM_001177963, intron 3 of 6) L1MA7|LINE|L1 67262 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 202.5-16 chr12 34123246 34123676 + 0.666667 NA Intergenic L1PA2|LINE|L1 100965 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 187.667-31 chr22 43583336 43583843 + 0.666667 NA intron (NM_198856, intron 22 of 29) MLT1A0|LTR|ERVL-MaLR 67335 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 194.667-12 chr10 120925459 120925971 + 0.666667 NA Intergenic Intergenic 74353 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 193-4 chr1 201377000 201377460 + 0.666667 NA intron (NM_001276347, intron 1 of 15) intron (NM_001276347, intron 1 of 15) 450 NM_000364 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 187.833-2 chr1 184496539 184496939 + 0.666667 NA intron (NM_030806, intron 2 of 5) intron (NM_030806, intron 2 of 5) 109710 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 170-6 chr11 24463411 24463771 + 0.666667 NA Intergenic Intergenic -33462 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 171.167-33 chr6 6603843 6604317 + 0.666667 NA intron (NM_004271, intron 1 of 4) L1MEd|LINE|L1 15360 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 164.5-34 chr20 47362277 47362724 + 0.666667 NA Intergenic L2|LINE|L2 -5611 NM_001281773 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 181-23 chr2 19734200 19734579 + 0.666667 NA Intergenic Intergenic -134465 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 262.333-7 chr11 105609966 105610521 + 0.666667 NA promoter-TSS (NM_001112812) promoter-TSS (NM_001112812) 170 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 197.5-2 chr1 93179926 93180513 + 0.666667 NA promoter-TSS (NM_206886) promoter-TSS (NM_206886) 194 NR_030761 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 207.667-40 chr6 80481084 80481605 + 0.666667 NA Intergenic Intergenic 374673 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 229.334-8 chr4 56978063 56978849 + 0.666667 NA promoter-TSS (NM_001303268) promoter-TSS (NM_001303268) -184 NM_001303268 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 171.333-22 chr16 74151458 74151722 + 0.666667 NA Intergenic L1ME3E|LINE|L1 63931 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 190.833-21 chr5 24564773 24565254 + 0.666667 NA intron (NM_001362460, intron 2 of 9) intron (NM_001362460, intron 2 of 9) 79965 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 256.5-3 chr10 109642871 109643650 + 0.666667 NA Intergenic MIRb|SINE|MIR 279986 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 186.167-21 chr6 10478643 10478952 + 0.666667 NA Intergenic Intergenic 39080 NR_049872 100846998 NR_049872 ENSG00000263705 MIR5689 - microRNA 5689 ncRNA 166-45 chr2 171434184 171434663 + 0.666667 NA promoter-TSS (NM_001321156) promoter-TSS (NM_001321156) 172 NM_001164821 80067 Hs.659439 NM_025000 ENSG00000115827 DCAF17 C20orf37|C2orf37 DDB1 and CUL4 associated factor 17 protein-coding 219.666-4 chr5 58909871 58910516 + 0.666667 NA Intergenic L1ME1|LINE|L1 89705 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 164-17 chr14 50591738 50592110 + 0.666667 NA intron (NM_015915, intron 4 of 13) intron (NM_015915, intron 4 of 13) 31899 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 214.834-11 chr5 140363108 140363847 + 0.666667 NA exon (NM_031467, exon 8 of 22) exon (NM_031467, exon 8 of 22) 3283 NM_001258427 83697 Hs.550313 NM_031467 ENSG00000113073 SLC4A9 AE4 solute carrier family 4 member 9 protein-coding 168.5-11 chr11 117443266 117443703 + 0.666667 NA intron (NM_020693, intron 21 of 32) intron (NM_020693, intron 21 of 32) 115630 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 300-15 chr3 188948071 188948774 + 0.666667 NA promoter-TSS (NR_046873) promoter-TSS (NR_046873) -783 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 202.167-19 chr17 31893838 31894263 + 0.666667 NA intron (NM_018428, intron 4 of 18) AluSz6|SINE|Alu 7658 NM_018428 55813 Hs.589862 NM_018428 ENSG00000108651 UTP6 C17orf40|HCA66 UTP6 small subunit processome component protein-coding 164.333-42 chr6 52417821 52418151 + 0.666667 NA Intergenic Intergenic -2356 NM_018100 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 173.667-15 chr13 29507969 29508354 + 0.666667 NA Intergenic Intergenic -20411 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 199.667-6 chr1 200678765 200679110 + 0.666667 NA intron (NR_110787, intron 1 of 2) L1MC5a|LINE|L1 -8939 NM_001349804 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 173.5-46 chr4 170173526 170173928 + 0.666667 NA Intergenic L1MA10|LINE|L1 -52864 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 165.5-12 chr14 55538950 55539381 + 0.666667 NA Intergenic Intergenic 40927 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 214.333-34 chr4 121736428 121736887 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL 27637 NM_001317839 132332 Hs.27524 NM_152399 ENSG00000164112 TMEM155 - transmembrane protein 155 protein-coding 174.333-2 chr1 205927790 205928289 + 0.666667 NA exon (NM_134325, exon 9 of 22) exon (NM_134325, exon 9 of 22) -6874 NR_110984 103021296 Hs.613648 NR_110983 SLC26A9-AS1 - SLC26A9 and RAB7B antisense RNA 1 ncRNA 220.667-13 chr12 4545911 4546343 + 0.666667 NA intron (NM_001130862, intron 4 of 9) intron (NM_001130862, intron 4 of 9) 7237 NM_006479 10635 Hs.730696 NM_006479 ENSG00000111247 RAD51AP1 PIR51 RAD51 associated protein 1 protein-coding 182.333-15 chr2 156163229 156163751 + 0.666667 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 91441 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 228-9 chr10 60470995 60471522 + 0.666667 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -81383 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 169.333-14 chr10 91635609 91635910 + 0.666667 NA Intergenic Intergenic -2688 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 208.667-5 chr10 74799948 74800475 + 0.666667 NA Intergenic L1MB3|LINE|L1 -25044 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 172.333-11 chr12 1250263 1250734 + 0.666667 NA intron (NR_027946, intron 13 of 18) intron (NR_027946, intron 13 of 18) 222750 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 244-2 chr1 196664944 196665381 + 0.666667 NA intron (NM_001014975, intron 1 of 9) intron (NM_001014975, intron 1 of 9) 13284 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 279.5-15 chr3 88957806 88958357 + 0.666667 NA Intergenic Intergenic -149540 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 224.333-13 chr17 33821482 33821922 + 0.666667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -287942 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 190.833-22 chr5 43535221 43535685 + 0.666667 NA intron (NM_006451, intron 7 of 10) intron (NM_006451, intron 7 of 10) -20305 NM_198566 375444 Hs.661641 NM_198566 ENSG00000172244 C5orf34 - chromosome 5 open reading frame 34 protein-coding 186.667-34 chr2 27761020 27761515 + 0.666667 NA Intergenic Intergenic -10450 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 193.333-10 chr12 1661796 1662262 + 0.666667 NA Intergenic CpG -1649 NR_037422 100500816 NR_037422 ENSG00000266043 MIR3649 - microRNA 3649 ncRNA 197.167-28 chr3 15267896 15268432 + 0.666667 NA intron (NM_001018009, intron 4 of 8) intron (NM_001018009, intron 4 of 8) 13980 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 194-4 chr1 159000855 159001415 + 0.666667 NA promoter-TSS (NM_001320010) promoter-TSS (NM_001320010) -823 NM_001320010 107181291 NM_001320010 PYDC5 POP3 pyrin domain containing 5 protein-coding 251.667-6 chr1 199406507 199407064 + 0.666667 NA Intergenic MER91C|DNA|hAT-Tip100 258187 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 163.667-17 chr14 63824014 63824422 + 0.666667 NA Intergenic AluJb|SINE|Alu -28747 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 219.333-21 chr19 46120851 46121538 + 0.666667 NA intron (NM_207393, intron 3 of 3) AluJb|SINE|Alu 3494 NM_207393 388555 Hs.365496 NM_207393 ENSG00000188624 IGFL3 UNQ483 IGF like family member 3 protein-coding 171.833-7 chr14 47285382 47285713 + 0.666667 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 57699 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 176.667-60 chrX 120560839 120561437 + 0.666667 NA promoter-TSS (NM_001079872) promoter-TSS (NM_001079872) -176 NM_001079872 8450 Hs.102914 NM_003588 ENSG00000158290 CUL4B CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2 cullin 4B protein-coding 230.667-28 chr8 126582202 126582730 + 0.666667 NA Intergenic Intergenic -23988 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 310.667-18 chr5 60160593 60161322 + 0.666667 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) 211706 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 207.667-4 chr10 88650061 88650390 + 0.666667 NA Intergenic LTR33B|LTR|ERVL -14217 NM_001198829 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 178.333-19 chr2 62960471 62960902 + 0.666667 NA intron (NM_001354215, intron 15 of 24) L3b|LINE|CR1 87025 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 171-61 chr9 137411813 137412240 + 0.666667 NA intron (NM_001286823, intron 1 of 7) intron (NM_001286823, intron 1 of 7) 11136 NR_104598 54932 Hs.495553 NM_017820 ENSG00000187609 EXD3 mut-7 exonuclease 3'-5' domain containing 3 protein-coding 168.333-49 chr4 74735842 74736119 + 0.666667 NA Intergenic Intergenic 58543 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 192.333-9 chr12 7936448 7936883 + 0.666667 NA promoter-TSS (NM_006931) promoter-TSS (NM_006931) -478 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 179.333-33 chr3 30001161 30001665 + 0.666667 NA intron (NM_001003792, intron 13 of 13) intron (NM_001003792, intron 13 of 13) -67257 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 186-41 chr7 139619091 139619549 + 0.666667 NA intron (NM_022740, intron 7 of 14) intron (NM_022740, intron 7 of 14) 95635 NM_001353368 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 168-36 chr4 35629297 35629650 + 0.666667 NA Intergenic L1MD1|LINE|L1 614466 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 194.833-12 chr16 23238020 23238453 + 0.666667 NA Intergenic LTR89|LTR|ERVL? 55491 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 187.833-15 chr2 237423390 237423808 + 0.666667 NA Intergenic AluSx1|SINE|Alu -9392 NM_004369 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 265.333-14 chr3 157082905 157083380 + 0.666667 NA non-coding (NR_034007, exon 4 of 4) non-coding (NR_034007, exon 4 of 4) 1301 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 205.833-25 chr6 46544298 46544778 + 0.666667 NA Intergenic L1MA2|LINE|L1 -52471 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 194-32 chr4 44085346 44085670 + 0.666667 NA Intergenic AluSx1|SINE|Alu 68446 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 201.667-30 chr20 59087111 59087653 + 0.666667 NA Intergenic Intergenic -44536 NR_037930 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 278.167-13 chr18 31553618 31554298 + 0.666667 NA intron (NR_045216, intron 2 of 5) LTR8A|LTR|ERV1 2953 NR_045216 100652770 Hs.562766 NR_045216 ENSG00000264859 DSG2-AS1 - DSG2 antisense RNA 1 ncRNA 184.667-11 chr12 14666435 14666831 + 0.666667 NA intron (NM_004963, intron 10 of 26) AluSx1|SINE|Alu 29966 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 177.333-21 chr22 38662017 38662314 + 0.666667 NA intron (NM_015373, intron 1 of 4) AluJb|SINE|Alu 5512 NM_015373 25776 Hs.334911 NM_015373 ENSG00000100211 CBY1 C22orf2|CBY|Chibby1|HS508I15A|PGEA1|PIGEA-14|PIGEA14|arb1 chibby family member 1, beta catenin antagonist protein-coding 186.667-51 chr6 28494629 28495172 + 0.666667 NA Intergenic Intergenic 20893 NM_182701 257202 Hs.448570 NM_182701 ENSG00000198704 GPX6 GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1 glutathione peroxidase 6 protein-coding 180.333-9 chr10 132660449 132660891 + 0.666667 NA intron (NM_005539, intron 4 of 15) intron (NM_005539, intron 4 of 15) -20605 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 259.667-22 chr8 128314554 128315270 + 0.666667 NA Intergenic Intergenic 164796 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 222.333-7 chr13 73056486 73057064 + 0.666667 NA intron (NM_001286818, intron 1 of 3) intron (NM_001286818, intron 1 of 3) 1799 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 185-18 chr12 31784876 31785175 + 0.666667 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 7273 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 272.333-6 chr12 48798562 48799316 + 0.666667 NA Intergenic AluSg|SINE|Alu 9363 NR_110020 100506125 Hs.306727 NR_110019 ENSG00000257660 ADCY6-DT - ADCY6 divergent transcript ncRNA 200.667-25 chr2 57463697 57464049 + 0.666667 NA Intergenic L1M3|LINE|L1 -443778 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 231.5-2 chr1 167458717 167459289 + 0.666667 NA intron (NM_000734, intron 1 of 7) AluSz6|SINE|Alu 59526 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 234.5 chr1 74180525 74181213 + 0.666667 NA intron (NM_001105659, intron 3 of 7) L2a|LINE|L2 17307 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 243.667-31 chr22 25587983 25588535 + 0.666667 NA intron (NM_001362778, intron 1 of 19) intron (NM_001362778, intron 1 of 19) 23584 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 226.5-32 chr5 41603308 41603888 + 0.666667 NA Intergenic Intergenic -92997 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 196.333-15 chr14 54676400 54676761 + 0.666667 NA intron (NM_015589, intron 1 of 11) AluSx|SINE|Alu -78253 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 179.833-17 chr2 72982245 72982637 + 0.666667 NA intron (NM_001330411, intron 11 of 14) intron (NM_001330411, intron 11 of 14) 64922 NM_004097 2016 Hs.516090 NM_004097 ENSG00000135638 EMX1 - empty spiracles homeobox 1 protein-coding 214.5-15 chr15 83185543 83186026 + 0.666667 NA intron (NM_016073, intron 1 of 5) MLT1F2|LTR|ERVL-MaLR 22039 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 166-57 chr5 27224469 27224860 + 0.666667 NA Intergenic L1MEg|LINE|L1 -186078 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 180.167-2 chr1 112960052 112960369 + 0.666667 NA intron (NR_103743, intron 1 of 2) MIR3|SINE|MIR 3795 NR_103744 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 242.667-10 chr16 78085849 78086467 + 0.666667 NA Intergenic L1MB7|LINE|L1 -13496 NM_130791 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 181.5-7 chr11 7378164 7378738 + 0.666667 NA intron (NM_175733, intron 3 of 6) intron (NM_175733, intron 3 of 6) 87384 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 184.667-47 chr7 133691549 133691968 + 0.666667 NA intron (NM_021807, intron 10 of 17) L2a|LINE|L2 133130 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 259.333-15 chr16 83840581 83841127 + 0.666667 NA Intergenic MER4D|LTR|ERV1 32876 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 165.5-44 chr8 88959120 88959557 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -631855 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 190.333-24 chr2 186777541 186777888 + 0.666667 NA Intergenic L1MA8|LINE|L1 71456 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 217.667-24 chr2 31416837 31417365 + 0.666667 NA Intergenic Intergenic -2359 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 248.333-25 chr4 37069869 37070279 + 0.666667 NA Intergenic MER67C|LTR|ERV1 68295 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 173.833-25 chr4 128158677 128159042 + 0.666667 NA intron (NR_146772, intron 11 of 19) L1MD2|LINE|L1 97547 NM_018078 55132 Hs.654971 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 180-41 chr2 195351154 195351494 + 0.666667 NA Intergenic Intergenic -305634 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 293.833-11 chr5 152352970 152353776 + 0.666667 NA Intergenic L2c|LINE|L2 51906 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 218.667-20 chr2 224358744 224359328 + 0.666667 NA Intergenic AluSx3|SINE|Alu 42958 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 165.833-35 chr7 14204665 14205082 + 0.666667 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -213448 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 199.5-39 chr5 163900223 163900724 + 0.666667 NA Intergenic AluSq2|SINE|Alu 394854 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 211 chr1 41216790 41217220 + 0.666667 NA intron (NM_001172218, intron 1 of 15) MLT1C-int|LTR|ERVL-MaLR 25301 NM_001172219 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 268.5-6 chr11 72814379 72814919 + 0.666667 NA intron (NM_001318766, intron 1 of 17) CpG 238 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 221.333-29 chr7 53427585 53428090 + 0.666667 NA Intergenic Intergenic 384094 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 190.667-52 chr7 51599735 51600206 + 0.666667 NA Intergenic L1PA4|LINE|L1 -206714 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 172.167-29 chr7 37836209 37836684 + 0.666667 NA Intergenic L1M6|LINE|L1 -12151 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 229.833-21 chr6 36986144 36986514 + 0.666667 NA non-coding (NR_130739, exon 1 of 12) non-coding (NR_130739, exon 1 of 12) 222 NM_001271641 23787 Hs.485262 NM_014341 ENSG00000137409 MTCH1 CGI-64|PIG60|PSAP|SLC25A49 mitochondrial carrier 1 protein-coding 188-12 chr12 64536923 64537445 + 0.666667 NA Intergenic Intergenic -73311 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 181-12 chr14 87492020 87492401 + 0.666667 NA Intergenic Intergenic 163084 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 227.667-43 chr8 141833494 141834183 + 0.666667 NA Intergenic L1ME2|LINE|L1 -47525 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 192.333-36 chr4 37840008 37840533 + 0.666667 NA intron (NM_018290, intron 6 of 13) intron (NM_018290, intron 6 of 13) 13584 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 288-26 chr8 81286377 81286896 + 0.666667 NA Intergenic L2a|LINE|L2 6100 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 166.333-34 chr2 176127187 176127449 + 0.666667 NA Intergenic Intergenic -2387 NM_001199747 3234 Hs.301963 NM_019558 ENSG00000175879 HOXD8 HOX4|HOX4E|HOX5.4 homeobox D8 protein-coding 216.333-34 chr5 51492391 51492809 + 0.666667 NA Intergenic Intergenic 109152 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 181-41 chrX 25020839 25021334 + 0.666667 NA Intergenic CpG -5121 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 165.167-39 chr5 177116544 177117024 + 0.666667 NA Intergenic Intergenic -16295 NM_172349 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 318.667-13 chr6 159914401 159914910 + 0.666667 NA Intergenic L1M3b|LINE|L1 23667 NM_001366704 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 183.167-9 chr12 22985892 22986283 + 0.666667 NA Intergenic Intergenic -189549 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 274.333-4 chr1 214621799 214622337 + 0.666667 NA intron (NM_016343, intron 6 of 19) intron (NM_016343, intron 6 of 19) 18873 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 209.167-28 chr8 84291615 84291995 + 0.666667 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 107139 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 169.667-29 chr18 6933029 6933420 + 0.666667 NA Intergenic L1M3|LINE|L1 -3355 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 288.167-14 chr2 65214238 65214912 + 0.666667 NA Intergenic HAL1|LINE|L1 -13120 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 235-5 chr10 99931209 99931815 + 0.666667 NA promoter-TSS (NM_001318326) promoter-TSS (NM_001318326) -605 NM_001318326 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 166.833-8 chr12 98503870 98504195 + 0.666667 NA promoter-TSS (NR_038383) promoter-TSS (NR_038383) -177 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LINC02453 - long intergenic non-protein coding RNA 2453 ncRNA 172.833-7 chr10 117824856 117825335 + 0.666667 NA Intergenic Intergenic -221726 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 201.667-40 chr3 174289989 174290454 + 0.666667 NA 3' UTR (NM_001365935, exon 6 of 6) 3' UTR (NM_001365935, exon 6 of 6) -369425 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 243.167-9 chr2 80168848 80169495 + 0.666667 NA intron (NM_001282598, intron 7 of 17) MER115|DNA|hAT-Tip100 135581 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 211.666-5 chr2 136909260 136909885 + 0.666667 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 144027 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 164.5-5 chr1 61077001 61077529 + 0.666667 NA promoter-TSS (NM_001145511) promoter-TSS (NM_001145511) 38 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 241.333-10 chr12 70342726 70343402 + 0.666667 NA intron (NM_001199302, intron 14 of 16) intron (NM_001199302, intron 14 of 16) -23226 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 209-29 chr5 33239182 33239525 + 0.666667 NA intron (NR_147008, intron 1 of 3) intron (NR_147008, intron 1 of 3) 9618 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 188.667-44 chr6 38050738 38051072 + 0.666667 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 231178 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 227-11 chr14 51556564 51557247 + 0.666667 NA intron (NR_047477, intron 2 of 3) intron (NR_047477, intron 2 of 3) 43047 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 189-9 chr10 69267729 69268061 + 0.666667 NA TTS (NM_025130) TTS (NM_025130) -2105 NM_033498 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 265 chr1 233911722 233912603 + 0.666667 NA intron (NM_173508, intron 2 of 7) MIRb|SINE|MIR 7486 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 201-11 chr15 83904460 83904789 + 0.666667 NA intron (NM_207517, intron 15 of 29) intron (NM_207517, intron 15 of 29) -175563 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 254.833-6 chr14 21395461 21396006 + 0.666667 NA intron (NM_001170629, intron 28 of 37) intron (NM_001170629, intron 28 of 37) 1668 NR_002916 319103 Hs.680078 NR_002916 ENSG00000200785 SNORD8 RNU6C|mgU6-53 small nucleolar RNA, C/D box 8 snoRNA 173.833-19 chr18 72289433 72289770 + 0.666667 NA Intergenic Intergenic 254741 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 168-38 chr4 71025921 71026352 + 0.666667 NA intron (NM_000788, intron 5 of 6) intron (NM_000788, intron 5 of 6) 32487 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 177.667-42 chr8 49468885 49469476 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 43000 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 196.667-33 chr20 49552254 49552633 + 0.666667 NA intron (NM_000961, intron 1 of 9) MER4-int|LTR|ERV1 15694 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 179.333-18 chr16 76198605 76199170 + 0.666667 NA Intergenic Intergenic -78514 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 239.333-4 chr12 15572136 15572736 + 0.666667 NA intron (NM_030671, intron 7 of 13) intron (NM_030671, intron 7 of 13) 25825 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 235.667-19 chr2 183327874 183328283 + 0.666667 NA Intergenic L1MA7|LINE|L1 203635 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 166.833 chr1 110977829 110978187 + 0.666667 NA Intergenic Intergenic -14064 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 192.5-44 chr6 8741135 8741488 + 0.666667 NA intron (NR_038980, intron 3 of 4) L1PA16|LINE|L1 89102 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 174.833-2 chr1 54485730 54486055 + 0.666667 NA Intergenic Intergenic -62336 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 168.333-9 chr10 119232210 119232589 + 0.666667 NA intron (NM_005308, intron 1 of 15) L1MA5A|LINE|L1 24828 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 225.167-5 chr10 87096775 87097316 + 0.666667 NA intron (NM_001330112, intron 2 of 9) intron (NM_001330112, intron 2 of 9) 1839 NM_001330112 54537 Hs.500419 NM_019054 ENSG00000122376 SHLD2 FAM35A|FAM35A1|RINN2|bA163M19.1 shieldin complex subunit 2 protein-coding 163.833-17 chr16 53756264 53756562 + 0.666667 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 52257 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 177.167-16 chr20 34111185 34111608 + 0.666667 NA intron (NM_003908, intron 1 of 8) intron (NM_003908, intron 1 of 8) 847 NM_003908 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 169.333-24 chr15 88267921 88268218 + 0.666667 NA non-coding (NR_038229, exon 3 of 4) non-coding (NR_038229, exon 3 of 4) -11330 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 178.167-5 chr11 107864504 107864921 + 0.666667 NA Intergenic MER90a|LTR|ERV1 -5925 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 224.667-2 chr1 71090247 71090736 + 0.666667 NA intron (NR_046217, intron 1 of 3) LTR80A|LTR|ERVL 9167 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 210.667 chr1 156718573 156719136 + 0.666667 NA Intergenic Intergenic 9585 NM_001303095 81875 Hs.301904 NM_030980 ENSG00000143319 ISG20L2 HSD38 interferon stimulated exonuclease gene 20 like 2 protein-coding 175.333-51 chr7 15671643 15672055 + 0.666667 NA intron (NR_134258, intron 1 of 3) AluSz|SINE|Alu 3902 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 167.333-21 chr12 131746195 131746538 + 0.666667 NA intron (NM_004592, intron 7 of 17) intron (NM_004592, intron 7 of 17) 35276 NM_004592 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 202.5-35 chr3 16727372 16727705 + 0.666667 NA Intergenic Intergenic -122115 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 202.667-14 chr17 32252948 32253507 + 0.666667 NA Intergenic Intergenic -12605 NM_138328 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 173.5-33 chr2 7201542 7201858 + 0.666667 NA Intergenic Intergenic -123820 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 204.5-14 chr15 33293274 33293726 + 0.666667 NA Intergenic Intergenic 16745 NR_120326 101928134 Hs.133851 NR_120326 ENSG00000259446 LOC101928134 - uncharacterized LOC101928134 ncRNA 176-33 chr5 117878213 117878712 + 0.666667 NA intron (NR_104997, intron 1 of 2) MIRb|SINE|MIR 148101 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 178.5-15 chr14 73827899 73828513 + 0.666667 NA intron (NR_135238, intron 1 of 1) (ATATAC)n|Simple_repeat|Simple_repeat 1929 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 247.333 chr1 88898104 88898581 + 0.666667 NA Intergenic HERVL-int|LTR|ERVL -6775 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 172.5-37 chr3 103985742 103986234 + 0.666667 NA Intergenic Intergenic -461872 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 185.667-39 chr5 172452943 172453252 + 0.666667 NA intron (NM_001017995, intron 1 of 12) intron (NM_001017995, intron 1 of 12) 1426 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 195.334-7 chr2 50451653 50452222 + 0.666667 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -104181 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 200.5-20 chr17 52762222 52762893 + 0.666667 NA Intergenic L1PB3|LINE|L1 -99564 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 265-29 chr9 81471242 81471742 + 0.666667 NA Intergenic Intergenic 218043 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 171.833-20 chr4 111840520 111840868 + 0.666667 NA Intergenic AluSq2|SINE|Alu -304760 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 163.5-17 chr15 81529632 81529879 + 0.666667 NA Intergenic Intergenic -155542 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 168.333-3 chr1 106110011 106110474 + 0.666667 NA Intergenic Intergenic -81989 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 204.667-13 chr15 76148539 76149072 + 0.666667 NA intron (NM_152335, intron 3 of 10) intron (NM_152335, intron 3 of 10) 32681 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 213.833-12 chr2 174771052 174771690 + 0.666667 NA Intergenic L2b|LINE|L2 -6899 NM_000079 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 174.667-38 chr4 58036904 58037318 + 0.666667 NA Intergenic AluSx|SINE|Alu 499217 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 163.667-9 chr11 98532477 98532944 + 0.666667 NA Intergenic Intergenic -488239 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 168.333-16 chr13 49965150 49965469 + 0.666667 NA Intergenic L1MC1|LINE|L1 -28808 NM_001127482 57213 Hs.44235 NM_020456 ENSG00000123178 SPRYD7 C13orf1|CLLD6 SPRY domain containing 7 protein-coding 167-44 chr9 32569319 32569758 + 0.666667 NA intron (NM_001199987, intron 1 of 2) AluJr|SINE|Alu 3621 NM_182739 4712 Hs.493668 NM_002493 ENSG00000165264 NDUFB6 B17|CI NADH:ubiquinone oxidoreductase subunit B6 protein-coding 198.333-51 chrX 17943825 17944216 + 0.666667 NA Intergenic L1MC5|LINE|L1 -82683 NM_001172743 10742 Hs.446680 NM_021785 ENSG00000131831 RAI2 - retinoic acid induced 2 protein-coding 214.5 chr1 28126694 28127105 + 0.666667 NA Intergenic Intergenic -38262 NR_104214 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 186.5-18 chr2 210170078 210170381 + 0.666667 NA intron (NM_001307976, intron 1 of 13) intron (NM_001307976, intron 1 of 13) 1180 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 237.333-26 chr3 94311169 94311786 + 0.666667 NA Intergenic Intergenic 248416 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 250-31 chr6 152535610 152536095 + 0.666667 NA intron (NM_182961, intron 4 of 145) intron (NM_182961, intron 4 of 145) 100999 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 177-32 chr5 123657212 123657492 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR 111935 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 209-33 chr7 53000759 53001321 + 0.666667 NA Intergenic MER101|LTR|ERV1 -34593 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 176.333-16 chr2 179713256 179713901 + 0.666667 NA intron (NR_148056, intron 3 of 9) L2b|LINE|L2 32088 NM_001352813 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 214.667-4 chr11 102295015 102295529 + 0.666667 NA Intergenic Intergenic -22212 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 175.167-41 chr7 50321712 50322111 + 0.666667 NA intron (NM_001220771, intron 1 of 3) intron (NM_001220771, intron 1 of 3) 2863 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 180.667-48 chr9 70641451 70641780 + 0.666667 NA intron (NM_001366143, intron 9 of 25) MER3|DNA|hAT-Charlie 168469 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 187.333-19 chr14_GL000225v1_random 117473 118105 + 0.666667 NA NA BSR/Beta|Satellite|Satellite NA NA 190.167-11 chr2 154431148 154431540 + 0.666667 NA intron (NM_052917, intron 11 of 12) intron (NM_052917, intron 11 of 12) 26094 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 184.333-16 chr15 56465866 56466294 + 0.666667 NA promoter-TSS (NM_018365) promoter-TSS (NM_018365) -943 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 230.5-25 chr4 109969469 109969891 + 0.666667 NA intron (NM_001357021, intron 10 of 19) intron (NM_001357021, intron 10 of 19) 56797 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 184.333-13 chr14 64466016 64466531 + 0.666667 NA intron (NM_004857, intron 1 of 1) intron (NM_004857, intron 1 of 1) 774 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 233.5-3 chr1 237276338 237276769 + 0.666667 NA intron (NM_001035, intron 2 of 104) L1M5|LINE|L1 -194566 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 174.333-9 chr12 38754778 38755254 + 0.666667 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 150575 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 180.333-17 chr13 72807941 72808268 + 0.666667 NA intron (NR_146206, intron 5 of 16) L1MD3|LINE|L1 25971 NM_001349655 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 258.333-18 chr7 14692332 14692971 + 0.666667 NA intron (NM_001350717, intron 9 of 24) intron (NM_001350717, intron 9 of 24) 148799 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 213.333-7 chr12 44317322 44317679 + 0.666667 NA intron (NM_001286211, intron 6 of 6) AluSq2|SINE|Alu 481419 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 194.333 chr1 26321762 26322160 + 0.666667 NA 3' UTR (NM_001039775, exon 20 of 20) 3' UTR (NM_001039775, exon 20 of 20) -3696 NM_145345 91544 Hs.145061 NM_145345 ENSG00000158062 UBXN11 COA-1|PP2243|SOC|SOCI|UBXD5 UBX domain protein 11 protein-coding 188-44 chr6 44452488 44453007 + 0.666667 NA Intergenic MER44D|DNA|TcMar-Tigger 17106 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 176.5-8 chr14 45983607 45984137 + 0.666667 NA Intergenic L1MA7|LINE|L1 -80287 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 172.333-22 chr14 89233485 89233988 + 0.666667 NA intron (NM_001085471, intron 4 of 6) MIR3|SINE|MIR 183497 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 186.5-29 chr6 97846172 97846693 + 0.666667 NA Intergenic MIRc|SINE|MIR -178099 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 169.167-32 chr7 91849843 91850096 + 0.666667 NA Intergenic MIRb|SINE|MIR 30733 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 188.333-40 chr8 68681890 68682344 + 0.666667 NA intron (NR_146187, intron 8 of 13) (ACTGTAGT)n|Simple_repeat|Simple_repeat -350626 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 201-38 chr8 126373303 126373789 + 0.666667 NA Intergenic L2c|LINE|L2 48051 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 246.333-2 chr1 59946470 59947051 + 0.666667 NA Intergenic Intergenic -19962 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 233-19 chr3 146517845 146518525 + 0.666667 NA intron (NM_001363872, intron 6 of 7) MLT1I|LTR|ERVL-MaLR -22194 NM_001199979 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 215-17 chr18 3108009 3108494 + 0.666667 NA intron (NM_019856, intron 21 of 36) LTR8B|LTR|ERV1 -96304 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 200.833-22 chr3 24572913 24573391 + 0.666667 NA Intergenic Intergenic -77444 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 195.334-6 chr15 74238007 74238510 + 0.666667 NA intron (NM_025055, intron 1 of 18) AluSq|SINE|Alu 1932 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 237.333-18 chr2 142437865 142438334 + 0.666667 NA Intergenic Intergenic -306398 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 187.667-29 chr2 68831512 68832088 + 0.666667 NA Intergenic Intergenic 39597 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 167.333-5 chr10 56365750 56366268 + 0.666667 NA Intergenic L1MEc|LINE|L1 -4736 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 169.333-27 chr16 72398848 72399323 + 0.666667 NA intron (NR_126330, intron 7 of 13) L1ME3E|LINE|L1 -226635 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 201.333-21 chr19 45403908 45404299 + 0.666667 NA intron (NM_001142502, intron 1 of 12) intron (NM_001142502, intron 1 of 12) 966 NM_006663 10848 Hs.466937 NM_006663 ENSG00000104881 PPP1R13L IASPP|NKIP1|RAI|RAI4 protein phosphatase 1 regulatory subunit 13 like protein-coding 251.333-26 chr7 81520928 81521608 + 0.666667 NA intron (NR_136264, intron 4 of 4) intron (NR_136264, intron 4 of 4) 40551 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 181.167-7 chr10 68949291 68949753 + 0.666667 NA Intergenic Intergenic -6648 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 184.833-20 chr3 15065257 15065592 + 0.666667 NA promoter-TSS (NM_022497) promoter-TSS (NM_022497) -109 NR_135246 64432 Hs.657764 NM_022497 ENSG00000131368 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 206-2 chr1 69618647 69619186 + 0.666667 NA intron (NM_001366842, intron 1 of 7) MLT1J2-int|LTR|ERVL-MaLR 49575 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 224.333-35 chr7 39285349 39285994 + 0.666667 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 43463 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 204.667-3 chr1 62785118 62785507 + 0.666667 NA intron (NM_032852, intron 1 of 10) intron (NM_032852, intron 1 of 10) 1180 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 237.666-5 chr2 54315596 54316245 + 0.666667 NA Intergenic L1MEc|LINE|L1 -14964 NM_001100396 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 228.667-30 chr3 122166948 122167396 + 0.666667 NA Intergenic L1MA3|LINE|L1 -16496 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 165.167-14 chr14 85416614 85416971 + 0.666667 NA intron (NR_102737, intron 2 of 2) intron (NR_102737, intron 2 of 2) 22877 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 209.5-30 chr6 8937985 8938332 + 0.666667 NA Intergenic Intergenic 285949 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 183.333-58 chr6 94333623 94334036 + 0.666667 NA Intergenic L1PA7|LINE|L1 615526 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 215.667-22 chr2 69652009 69652581 + 0.666667 NA intron (NM_001320698, intron 1 of 14) AluSx1|SINE|Alu 8487 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 226.333-27 chr8 105752138 105752573 + 0.666667 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 308148 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 186.667-5 chr1 87915332 87915723 + 0.666667 NA Intergenic Intergenic -543872 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 279.333-19 chr6 34393604 34394370 + 0.666667 NA intron (NM_001202470, intron 5 of 8) intron (NM_001202470, intron 5 of 8) -1318 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 295.5-17 chr8 77913373 77914450 + 0.666667 NA Intergenic Intergenic 463214 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 253-14 chr2 153949337 153950067 + 0.666667 NA intron (NM_052917, intron 3 of 12) L1ME3F|LINE|L1 5308 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 204.333-15 chr14 34326073 34326556 + 0.666667 NA Intergenic Intergenic 135926 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 201.667-29 chr20 58650759 58651394 + 0.666667 NA promoter-TSS (NM_001134773) promoter-TSS (NM_001134773) -177 NR_037942 8675 Hs.307913 NM_003763 ENSG00000124222 STX16 SYN16 syntaxin 16 protein-coding 228.333-13 chr14 25491001 25491639 + 0.666667 NA Intergenic Intergenic -441023 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 214.5-2 chr1 62357549 62358088 + 0.666667 NA Intergenic Intergenic -38384 NM_001320269 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 168.333-66 chr8 129380639 129380967 + 0.666667 NA intron (NR_130918, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 103339 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 213.5-6 chr14 37011712 37012233 + 0.666667 NA intron (NM_001171170, intron 1 of 10) Tigger12|DNA|TcMar-Tigger -59581 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 175.834-4 chr16 78929619 78930139 + 0.666667 NA intron (NM_001291997, intron 7 of 7) MLT1J|LTR|ERVL-MaLR 670858 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 172.333-33 chr2 163608228 163608651 + 0.666667 NA 3' UTR (NM_001321825, exon 2 of 2) 3' UTR (NM_001321825, exon 2 of 2) 127569 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 197.833-10 chr12 12323760 12324146 + 0.666667 NA Intergenic L2c|LINE|L2 26289 NM_018050 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 219.833-4 chr12 39352877 39353351 + 0.666667 NA intron (NM_001173464, intron 10 of 37) intron (NM_001173464, intron 10 of 37) 90006 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 167-15 chr19 40716750 40717085 + 0.666667 NA promoter-TSS (NM_024876) promoter-TSS (NM_024876) -31 NM_024876 79934 Hs.130712 NM_024876 ENSG00000123815 COQ8B ADCK4|NPHS9 coenzyme Q8B protein-coding 165.333-45 chr7 48766105 48766670 + 0.666667 NA Intergenic Intergenic -158160 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 212.667-20 chr19 6093056 6093423 + 0.666667 NA intron (NM_000635, intron 1 of 17) L1ME3Cz|LINE|L1 17261 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 171.167-21 chr2 100057560 100058015 + 0.666667 NA intron (NM_001025108, intron 2 of 23) L3|LINE|CR1 47796 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 187.833-3 chr10 38527657 38528058 + 0.666667 NA Intergenic Intergenic 99711 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 180-21 chr14 86052104 86052531 + 0.666667 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 117639 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 182.167-19 chr3 115570824 115571475 + 0.666667 NA Intergenic Intergenic -52361 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 262.833-16 chr7 124955772 124956568 + 0.666667 NA intron (NR_125719, intron 2 of 7) MER41B|LTR|ERV1 -26187 NR_003103 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 190.333-21 chr18 33492686 33493241 + 0.666667 NA Intergenic Intergenic -51923 NM_001371120 200-49 chr9 30897646 30898072 + 0.666667 NA Intergenic Intergenic 483631 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 232.833-11 chr13 95623921 95624538 + 0.666667 NA intron (NM_014934, intron 8 of 21) intron (NM_014934, intron 8 of 21) 20477 NM_014934 22873 Hs.656580 NM_014934 ENSG00000134874 DZIP1 DZIP|DZIPt1 DAZ interacting zinc finger protein 1 protein-coding 195-14 chr15 27788532 27789115 + 0.666667 NA intron (NM_001300984, intron 22 of 22) L1M4a2|LINE|L1 310492 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 273-16 chr20 51346358 51346835 + 0.666667 NA Intergenic Intergenic 106381 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 176.833-37 chr7 46706073 46706482 + 0.666667 NA Intergenic Intergenic -9155 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 177.333-37 chr8 101630511 101630822 + 0.666667 NA intron (NM_024915, intron 9 of 15) L2|LINE|L2 138227 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 181.833-23 chr5 12462038 12462682 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -112497 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 277-30 chr7 51431505 51431935 + 0.666667 NA Intergenic Intergenic -38464 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 183-18 chr14 89900494 89900888 + 0.666667 NA intron (NM_001284269, intron 5 of 5) intron (NM_001284269, intron 5 of 5) 53845 NM_001284269 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 179.667 chr1 37605048 37605572 + 0.666667 NA Intergenic Intergenic -9325 NM_001323624 29889 Hs.75528 NM_013285 ENSG00000134697 GNL2 HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2 G protein nucleolar 2 protein-coding 185.667-38 chr5 156827667 156828079 + 0.666667 NA Intergenic L1PA13|LINE|L1 -22422 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 222.167-4 chr1 114886050 114886427 + 0.666667 NA non-coding (NR_104211, exon 14 of 33) non-coding (NR_104211, exon 14 of 33) 31375 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 166.167-23 chr20 58946761 58947303 + 0.666667 NA Intergenic AluSz6|SINE|Alu -34224 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 252.167-14 chr22 32240764 32241550 + 0.666667 NA intron (NM_014227, intron 5 of 14) HAL1M8|LINE|L1 14190 NM_014227 6527 Hs.130101 NM_014227 ENSG00000100191 SLC5A4 DJ90G24.4|SAAT1|SGLT3 solute carrier family 5 member 4 protein-coding 183.5-30 chr3 145768943 145769380 + 0.666667 NA Intergenic Intergenic 300024 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 191.833-2 chr1 229701819 229702191 + 0.666667 NA Intergenic L1MCc|LINE|L1 75758 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 174.833-16 chr3 99919658 99919995 + 0.666667 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -43623 NM_001282794 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 224.333-19 chr2 45002774 45003166 + 0.666667 NA Intergenic Intergenic 6482 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 205.333-32 chr3 8769075 8769508 + 0.666667 NA promoter-TSS (NM_001354655) promoter-TSS (NM_001354655) -59 NM_001354655 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 194.667-42 chr4 34917364 34917693 + 0.666667 NA Intergenic L1PB4|LINE|L1 -647781 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 250.5-6 chr11 27703999 27704636 + 0.666667 NA intron (NM_170731, intron 1 of 1) intron (NM_170731, intron 1 of 1) -2684 NM_170733 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 222.333-12 chr16 13961388 13961845 + 0.666667 NA Intergenic Intergenic 41459 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 177.333-15 chr2 38569466 38569838 + 0.666667 NA intron (NM_138394, intron 9 of 12) intron (NM_138394, intron 9 of 12) 33276 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 168.833-13 chr20 24993783 24994074 + 0.666667 NA Intergenic Intergenic -1177 NM_020531 57136 Hs.472330 NM_020531 ENSG00000101474 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 226-34 chr4 38889620 38890031 + 0.666667 NA intron (NM_001350635, intron 2 of 8) MLT1J|LTR|ERVL-MaLR 21793 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 233-2 chr1 172894546 172895166 + 0.666667 NA Intergenic Intergenic 156107 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 213-35 chr6 136542096 136542844 + 0.666667 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 8349 NM_003980 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 209.167-9 chr12 58918905 58919305 + 0.666667 NA intron (NM_153377, intron 1 of 18) intron (NM_153377, intron 1 of 18) 441 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 201.333-17 chr15 64703277 64703759 + 0.666667 NA promoter-TSS (NM_002537) promoter-TSS (NM_002537) -237 NM_001301302 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 184.167-26 chr21 27750230 27750544 + 0.666667 NA intron (NR_024357, intron 3 of 3) L1PA12|LINE|L1 28008 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 211.5-22 chr17 20076243 20076631 + 0.666667 NA intron (NM_001243439, intron 1 of 14) AluSz|SINE|Alu -10585 NM_152904 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 260.833-4 chr10 54029704 54030254 + 0.666667 NA intron (NM_001354411, intron 19 of 34) intron (NM_001354411, intron 19 of 34) -456251 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 184.667-25 chr18 46401366 46401746 + 0.666667 NA intron (NM_001256758, intron 1 of 5) MIR3|SINE|MIR 67332 NR_046357 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 163.167-36 chr5 93163541 93163937 + 0.666667 NA Intergenic Intergenic 407604 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 173.667-26 chr18 6980958 6981277 + 0.666667 NA intron (NM_005559, intron 41 of 62) AluY|SINE|Alu 26440 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 170-46 chr5 130494488 130494996 + 0.666667 NA Intergenic L1MA2|LINE|L1 590277 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 219.667-5 chr14 61686888 61687416 + 0.666667 NA intron (NR_047116, intron 1 of 1) L1MC2|LINE|L1 -8361 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 205.167-4 chr14 67018665 67019211 + 0.666667 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -170502 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 169.667-58 chr7 86750225 86750529 + 0.666667 NA intron (NM_001363522, intron 1 of 4) MamSINE1|SINE|tRNA-RTE 106463 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 206-36 chr8 130672637 130672982 + 0.666667 NA Intergenic Intergenic -229135 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 172.333-10 chr11 99255321 99255682 + 0.666667 NA intron (NM_001243270, intron 1 of 23) (AATA)n|Simple_repeat|Simple_repeat 234552 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 177.333-25 chr3 150372756 150373091 + 0.666667 NA Intergenic Intergenic -35375 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 175-5 chr1 170310436 170311006 + 0.666667 NA Intergenic Intergenic -26513 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 193-38 chr8 123729166 123729627 + 0.666667 NA intron (NM_004306, intron 1 of 10) MLT1L|LTR|ERVL-MaLR 7997 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 209.333-24 chr22 24105035 24105546 + 0.666667 NA intron (NM_012295, intron 26 of 36) intron (NM_012295, intron 26 of 36) -76197 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 185.667-46 chr8 111807224 111807622 + 0.666667 NA Intergenic Intergenic 430784 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 201-16 chr17 30264057 30264539 + 0.666667 NA intron (NM_000386, intron 11 of 11) intron (NM_000386, intron 11 of 11) 27646 NM_000386 642 Hs.371914 NM_000386 ENSG00000108578 BLMH BH|BMH bleomycin hydrolase protein-coding 198-6 chr11 111867969 111868337 + 0.666667 NA intron (NR_147984, intron 3 of 15) L1MDa|LINE|L1 3128 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 209.333-17 chr16 81068601 81069112 + 0.666667 NA intron (NM_152337, intron 1 of 3) AluSx|SINE|Alu 8411 NM_001100873 123775 Hs.658684 NM_152337 ENSG00000166455 C16orf46 - chromosome 16 open reading frame 46 protein-coding 207.333-37 chr5 18213313 18213699 + 0.666667 NA Intergenic Intergenic 406232 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 233.5-31 chr8 92467230 92467946 + 0.666667 NA Intergenic Intergenic 187906 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 221.167-28 chr8 129731784 129732207 + 0.666667 NA Intergenic LTR41B|LTR|ERVL -51756 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 325.5-12 chr2 186256438 186257228 + 0.666667 NA Intergenic Intergenic -170516 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 166-59 chr6 43372468 43372754 + 0.666667 NA Intergenic LTR78|LTR|ERV1 -2964 NM_014345 24149 Hs.509718 NM_014345 ENSG00000171467 ZNF318 HRIHFB2436|TZF|ZFP318 zinc finger protein 318 protein-coding 178.5-13 chr14 42129749 42130271 + 0.666667 NA Intergenic Intergenic 523154 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 187.667-19 chr14 78927538 78927921 + 0.666667 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -272253 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 213 chr1 29849070 29849527 + 0.666667 NA Intergenic LTR16C|LTR|ERVL 188314 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 172.333-5 chr1 109790699 109790992 + 0.666667 NA Intergenic Intergenic -26922 NM_133181 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 163.167-26 chr20 7879537 7879995 + 0.666667 NA Intergenic Intergenic 60692 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 192-49 chr8 132919440 132919800 + 0.666667 NA intron (NM_003235, intron 21 of 47) MER20|DNA|hAT-Charlie 52662 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 172.333-42 chr4 167509437 167509695 + 0.666667 NA Intergenic Intergenic -274976 NM_001204352 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 164.333-8 chr10 76983285 76983746 + 0.666667 NA intron (NM_001322838, intron 19 of 29) AluSz6|SINE|Alu 95471 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 164-37 chr2 201193548 201193993 + 0.666667 NA intron (NM_032977, intron 4 of 9) intron (NM_032977, intron 4 of 9) 10629 NM_001306083 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 176.5-40 chr8 62165306 62165732 + 0.666667 NA Intergenic L1PB1|LINE|L1 -83335 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 232.667-18 chr18 46327883 46328314 + 0.666667 NA Intergenic AluJb|SINE|Alu -5920 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 264.667-14 chr6 12147350 12147759 + 0.666667 NA intron (NM_002114, intron 7 of 8) (TTG)n|Simple_repeat|Simple_repeat 135242 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 182.667-44 chr6 72622476 72622864 + 0.666667 NA intron (NM_001160132, intron 1 of 13) CpG 827 NM_001160132 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 218.667-4 chr12 4576787 4577151 + 0.666667 NA intron (NM_001371301, intron 2 of 14) L1MC2|LINE|L1 -13103 NM_003845 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 178.834-6 chr4 42499261 42499963 + 0.666667 NA intron (NM_001105529, intron 23 of 35) intron (NM_001105529, intron 23 of 35) 102124 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 226.667-30 chr4 111449346 111449953 + 0.666667 NA Intergenic Intergenic -589002 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 166.167-31 chr5 28437387 28437876 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR -149966 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 239.5 chr1 117238140 117238622 + 0.666667 NA Intergenic Intergenic -27421 NM_001253850 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 256.167-12 chr20 21326956 21327591 + 0.666667 NA intron (NM_001317960, intron 3 of 29) intron (NM_001317960, intron 3 of 29) 23775 NM_001317960 22803 Hs.255932 NM_012255 ENSG00000088930 XRN2 - 5'-3' exoribonuclease 2 protein-coding 192.167-23 chr21 31961400 31961912 + 0.666667 NA intron (NM_014586, intron 5 of 10) MARNA|DNA|TcMar-Mariner 88636 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 240.333-3 chr10 14033439 14033941 + 0.666667 NA intron (NM_018027, intron 2 of 24) AluSz|SINE|Alu -25140 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 211-3 chr1 209247465 209247839 + 0.666667 NA Intergenic (TATTATA)n|Simple_repeat|Simple_repeat -77804 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 205.333-28 chr22 35209560 35210009 + 0.666667 NA intron (NR_126356, intron 1 of 5) MLT1A0-int|LTR|ERVL-MaLR 21272 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 203.333-2 chr1 100985582 100985947 + 0.666667 NA Intergenic L1ME1|LINE|L1 40020 NM_015958 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 198.333-32 chr22 34844912 34845346 + 0.666667 NA intron (NR_138042, intron 3 of 4) THE1D|LTR|ERVL-MaLR 152787 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 187.833-32 chr8 76930216 76930740 + 0.666667 NA Intergenic AluJr4|SINE|Alu 36372 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 165.333-50 chr8 124043522 124043859 + 0.666667 NA intron (NM_001039112, intron 20 of 40) MIR|SINE|MIR -2908 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 189.333-28 chr4 66243761 66244269 + 0.666667 NA Intergenic Intergenic -32809 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 171.667-2 chr1 46725494 46725826 + 0.666667 NA Intergenic Intergenic -6546 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 242.167-13 chr2 27771651 27772309 + 0.666667 NA intron (NM_145330, intron 1 of 2) CpG 261 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 177.833-8 chr12 112314558 112315007 + 0.666667 NA intron (NM_001109662, intron 2 of 75) intron (NM_001109662, intron 2 of 75) 67649 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 163.333-2 chr1 113630881 113631258 + 0.666667 NA intron (NM_001142782, intron 9 of 20) L1MA3|LINE|L1 128086 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 196.167-24 chr3 27141300 27141676 + 0.666667 NA exon (NM_152534, exon 34 of 39) exon (NM_152534, exon 34 of 39) 75035 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 218.666-7 chr17 10385088 10385698 + 0.666667 NA intron (NR_125367, intron 1 of 10) L1ME4a|LINE|L1 2261 NR_125367 100128560 Hs.661174 NR_125367 MYHAS - myosin heavy chain gene cluster antisense RNA ncRNA 175.167-5 chr10 77109497 77109992 + 0.666667 NA intron (NM_001271519, intron 8 of 28) intron (NM_001271519, intron 8 of 28) -31087 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 175.667-21 chr17 13003318 13003846 + 0.666667 NA intron (NM_001165962, intron 10 of 22) intron (NM_001165962, intron 10 of 22) 14445 NM_018127 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 213-30 chr4 53962418 53962776 + 0.666667 NA Intergenic Intergenic 24685 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 163.667-36 chr3 29579868 29580166 + 0.666667 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 298705 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 180.333-33 chr20 53490513 53490880 + 0.666667 NA 3' UTR (NM_001193421, exon 3 of 3) 3' UTR (NM_001193421, exon 3 of 3) -62074 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 190-15 chr12 14349569 14350093 + 0.666667 NA Intergenic Zaphod|DNA|hAT-Tip100 -15801 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 205.334-15 chr8 129481251 129481774 + 0.666667 NA intron (NR_130917, intron 1 of 3) MIRb|SINE|MIR 2630 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 320-4 chr10 24197446 24198214 + 0.666667 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -10961 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 243.333-42 chr8 54633042 54633538 + 0.666667 NA Intergenic Intergenic 17194 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 201.5-33 chr6 135497492 135497824 + 0.666667 NA promoter-TSS (NM_001134831) promoter-TSS (NM_001134831) 82 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 266.167-2 chr2 53529664 53530263 + 0.666667 NA Intergenic L2c|LINE|L2 -237820 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 203.333-42 chr4 60136024 60136519 + 0.666667 NA Intergenic L1ME2|LINE|L1 -786348 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 291-17 chr3 19064436 19065437 + 0.666667 NA Intergenic Intergenic -83574 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 250.833-11 chr20 55453182 55453966 + 0.666667 NA Intergenic Intergenic -26377 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 179.833-8 chr11 61195036 61195369 + 0.666667 NA Intergenic L2c|LINE|L2 -8313 NM_001079807 643834 Hs.601055 NM_001079807 ENSG00000229859 PGA3 - pepsinogen 3, group I (pepsinogen A) protein-coding 178 chr1 8017779 8018303 + 0.666667 NA intron (NM_018948, intron 1 of 3) intron (NM_018948, intron 1 of 3) 8268 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 169.333-3 chr1 39959012 39959412 + 0.666667 NA intron (NM_032793, intron 3 of 13) AluJr|SINE|Alu 4067 NM_001287809 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 185.834-8 chr3 190012776 190013350 + 0.666667 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 107834 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 196.666-3 chr2 67011883 67012453 + 0.666667 NA Intergenic LTR16D1|LTR|ERVL -74278 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 170.167-19 chr16 78003189 78003710 + 0.666667 NA Intergenic AluSz6|SINE|Alu -19099 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 238.666-6 chr2 127239520 127240203 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR -19562 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 168.167-10 chr15 86657637 86658139 + 0.666667 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -274992 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 167.833-46 chr7 129825987 129826416 + 0.666667 NA Intergenic CpG -51187 NR_029615 406959 NR_029615 ENSG00000207691 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 178.167 chr1 105969262 105969704 + 0.666667 NA intron (NR_146609, intron 5 of 5) intron (NR_146609, intron 5 of 5) 58770 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 223-24 chr2 63902201 63902721 + 0.666667 NA intron (NM_001005739, intron 20 of 22) L1ME1|LINE|L1 60581 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 245.5-20 chr7 26149845 26150369 + 0.666667 NA Intergenic Intergenic -2091 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 174.667-25 chr2 42111854 42112129 + 0.666667 NA Intergenic Intergenic -57362 NM_019063 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 200.833-11 chr12 61984617 61985087 + 0.666667 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 207987 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 173.167-3 chr1 183916596 183917131 + 0.666667 NA intron (NM_001297669, intron 17 of 18) intron (NM_001297669, intron 17 of 18) 111743 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 171-51 chr6 156548606 156549018 + 0.666667 NA Intergenic UCON12A|Unknown|Unknown 170062 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 214.833-22 chr8 88031904 88032318 + 0.666667 NA TTS (NM_005941) TTS (NM_005941) -158096 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 164.167-57 chr9 130939040 130939359 + 0.666667 NA promoter-TSS (NM_032843) promoter-TSS (NM_032843) 48 NM_032843 84929 Hs.133205 NM_032843 ENSG00000130720 FIBCD1 - fibrinogen C domain containing 1 protein-coding 287.667-22 chr5 57435772 57436654 + 0.666667 NA Intergenic Intergenic 46598 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 188.833-10 chr14 60981250 60981587 + 0.666667 NA promoter-TSS (NM_001350254) promoter-TSS (NM_001350254) 173 NR_033344 145389 Hs.200738 NM_153811 ENSG00000139974 SLC38A6 NAT-1|SNAT6 solute carrier family 38 member 6 protein-coding 308.833-3 chr1 246598213 246598748 + 0.666667 NA intron (NM_152609, intron 2 of 10) intron (NM_152609, intron 2 of 10) 32024 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 207.333-7 chr10 35433917 35434251 + 0.666667 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 97210 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 170-11 chr11 102614707 102615136 + 0.666667 NA intron (NM_004771, intron 2 of 9) MER63B|DNA|hAT-Blackjack 10411 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 190.167-3 chr12 46964424 46964759 + 0.666667 NA Intergenic Intergenic -115012 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 202-37 chr8 32687878 32688263 + 0.666667 NA intron (NM_001322205, intron 1 of 8) intron (NM_001322205, intron 1 of 8) -33683 NM_001159996 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 191.667-37 chr4 30654443 30655037 + 0.666667 NA Intergenic Intergenic -65629 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 181.5-21 chr17 72350765 72351144 + 0.666667 NA intron (NR_135222, intron 1 of 3) intron (NR_135222, intron 1 of 3) 8143 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 177-39 chr7 40273245 40273673 + 0.666667 NA intron (NM_001193312, intron 7 of 12) intron (NM_001193312, intron 7 of 12) 138483 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 165-5 chr10 24560846 24561232 + 0.666667 NA Intergenic Intergenic 61804 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 169.333-52 chr5 158158246 158158849 + 0.666667 NA Intergenic Intergenic 251226 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 237.667-23 chr2 226017134 226017490 + 0.666667 NA Intergenic AluJb|SINE|Alu -125482 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 165.333-48 chr8 103427902 103428372 + 0.666667 NA intron (NM_015420, intron 5 of 10) intron (NM_015420, intron 5 of 10) 12751 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 196.667-6 chr11 31229511 31230287 + 0.666667 NA intron (NM_001367979, intron 9 of 38) L1M3|LINE|L1 139840 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 214.667-15 chr2 43715944 43716268 + 0.666667 NA intron (NM_172069, intron 15 of 29) intron (NM_172069, intron 15 of 29) -39677 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 203.667-35 chr4 173753110 173753530 + 0.666667 NA Intergenic Intergenic -143953 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 343.834-4 chr3 135525581 135526361 + 0.666667 NA Intergenic MIRc|SINE|MIR -439757 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 167-34 chr5 38208076 38208564 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR -50239 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 168.833-17 chr4 71897999 71898645 + 0.666667 NA Intergenic Intergenic -92802 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 227.833-8 chr15 94322843 94323288 + 0.666667 NA intron (NM_018349, intron 3 of 21) intron (NM_018349, intron 3 of 21) 24864 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 203-22 chr20 63147647 63147995 + 0.666667 NA Intergenic L1ME2|LINE|L1 -30679 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 220.5-30 chr21 27463609 27464351 + 0.666667 NA Intergenic Intergenic -258399 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 167.167-4 chr1 61064916 61065352 + 0.666667 NA Intergenic MIR3|SINE|MIR -12093 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 287.167-4 chr14 31548844 31549524 + 0.666667 NA Intergenic L1MA4|LINE|L1 -12220 NR_120408 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 187.167-4 chr1 119267509 119267798 + 0.666667 NA intron (NR_125975, intron 6 of 6) AluSz|SINE|Alu -60599 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 218.667-40 chr9 31852119 31852544 + 0.666667 NA Intergenic Intergenic -470841 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 172.667-28 chr2 22575850 22576184 + 0.666667 NA Intergenic Intergenic 39538 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 246.333-36 chr7 15733533 15734116 + 0.666667 NA Intergenic Intergenic 45446 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 237.5-29 chr22 29840888 29841254 + 0.666667 NA Intergenic AluSx|SINE|Alu -2797 NM_001369923 84164 Hs.731754 NM_032204 ENSG00000100325 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 209.333-6 chr1 74627669 74628170 + 0.666667 NA intron (NM_001002912, intron 7 of 14) Tigger2b_Pri|DNA|TcMar-Tigger 38184 NR_121670 101927320 Hs.662589 NR_121670 ENSG00000234497 ERICH3-AS1 - ERICH3 antisense RNA 1 ncRNA 180.167-25 chr9 37462921 37463222 + 0.666667 NA intron (NM_014872, intron 1 of 1) LTR28C|LTR|ERV1 2379 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 196.833-8 chr15 83249238 83249564 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie 34056 NM_001301206 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 210.667-38 chr5 89894745 89895159 + 0.666667 NA Intergenic L1MA2|LINE|L1 121768 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 169.5-2 chr1 93010614 93011117 + 0.666667 NA Intergenic L1MB7|LINE|L1 -49343 NM_001252273 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 166-6 chr10 21733857 21734395 + 0.666667 NA non-coding (NR_136736, exon 23 of 26) non-coding (NR_136736, exon 23 of 26) 199954 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 209-3 chr1 30863665 30864154 + 0.666667 NA Intergenic AluJo|SINE|Alu 39257 NR_146732 105378622 Hs.209284 NR_146732 ENSG00000223382 LINC01778 - long intergenic non-protein coding RNA 1778 ncRNA 183.333-47 chr3 168101168 168101538 + 0.666667 NA Intergenic Intergenic -5429 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 201.667-8 chr12 17994370 17994759 + 0.666667 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 95629 NR_104413 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 168-9 chr10 114003394 114003719 + 0.666667 NA Intergenic MER113|DNA|hAT-Charlie -40310 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 171.333-6 chr10 88592772 88593261 + 0.666667 NA intron (NM_001010939, intron 4 of 10) ERV3-16A3_I-int|LTR|ERVL 6254 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 188.5-20 chr2 18276889 18277304 + 0.666667 NA Intergenic Intergenic 283557 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 214.333-40 chr6 46755557 46755951 + 0.666667 NA intron (NM_001162435, intron 4 of 4) intron (NM_001162435, intron 4 of 4) 8837 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 230.667-15 chr2 231973212 231973592 + 0.666667 NA intron (NR_046477, intron 1 of 18) intron (NR_046477, intron 1 of 18) 11689 NR_046476 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 200.667-30 chr20 34741231 34741699 + 0.666667 NA exon (NM_014071, exon 11 of 15) exon (NM_014071, exon 11 of 15) 36746 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PIGU|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 200.167-9 chr12 92053774 92054182 + 0.666667 NA intron (NR_132341, intron 1 of 4) L1ME4a|LINE|L1 87735 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 184-21 chr13 20885434 20886046 + 0.666667 NA intron (NM_022459, intron 1 of 22) AluJr|SINE|Alu 17034 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 172.667-43 chr4 133453610 133453959 + 0.666667 NA Intergenic Intergenic 304490 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 193.333-37 chr20 35374415 35374830 + 0.666667 NA intron (NM_001184977, intron 2 of 7) intron (NM_001184977, intron 2 of 7) 37351 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 222.833-17 chr6 12844392 12844866 + 0.666667 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) -112727 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 223-44 chrX 53016862 53017717 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR -21817 NM_001242492 29057 Hs.6451 NM_014138 ENSG00000268350 FAM156A PRO0659|TMEM29 family with sequence similarity 156 member A protein-coding 198.5-37 chr6 36725529 36725978 + 0.666667 NA intron (NM_001257357, intron 9 of 13) intron (NM_001257357, intron 9 of 13) 27927 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 163.333-60 chr9 104990734 104991100 + 0.666667 NA Intergenic MIR3|SINE|MIR -62762 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 215.833-7 chr13 27339201 27339553 + 0.666667 NA Intergenic AluSz6|SINE|Alu 68200 NM_001331126 387496 Hs.192131 NM_206827 ENSG00000122035 RASL11A - RAS like family 11 member A protein-coding 206.167-25 chr8 125429585 125430272 + 0.666667 NA promoter-TSS (NM_025195) promoter-TSS (NM_025195) -430 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 173.167-22 chr20 42279298 42279644 + 0.666667 NA intron (NM_133170, intron 13 of 31) MLT1C|LTR|ERVL-MaLR -406012 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 199.667-33 chr4 70149941 70150406 + 0.666667 NA Intergenic L1MCa|LINE|L1 -4064 NM_214711 401137 Hs.518795 NM_214711 ENSG00000187533 PRR27 C4orf40 proline rich 27 protein-coding 220.333-23 chr4 82785253 82785834 + 0.666667 NA intron (NM_001037582, intron 1 of 4) MER34B|LTR|ERV1 13253 NM_001037582 79966 Hs.379191 NM_024906 ENSG00000145284 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 194.5-29 chr2 231623208 231623507 + 0.666667 NA Intergenic AluJb|SINE|Alu 30493 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 174.667-16 chr14 67212089 67212620 + 0.666667 NA intron (NM_173526, intron 6 of 8) AluJb|SINE|Alu 22914 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 187.5-7 chr1 207082546 207082914 + 0.666667 NA Intergenic Intergenic -6130 NM_001017365 725 Hs.99886 NM_000716 ENSG00000123843 C4BPB C4BP complement component 4 binding protein beta protein-coding 235.833-18 chr6 12752572 12753330 + 0.666667 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) 34252 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 181.333-40 chr7 81477416 81477794 + 0.666667 NA Intergenic AluSc|SINE|Alu 84214 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 175.333-57 chrX 72128809 72129277 + 0.666667 NA 3' UTR (NM_001024455, exon 1 of 2) 3' UTR (NM_001024455, exon 1 of 2) 2872 NM_001024455 340526 Hs.512180 NM_001024455 ENSG00000242732 RTL5 6430402L03Rik|MAR5|MART5|RGAG4|SIRH8 retrotransposon Gag like 5 protein-coding 240.667-14 chr15 71650535 71650965 + 0.666667 NA intron (NM_001286429, intron 1 of 11) MER48|LTR|ERV1 40789 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 269.167-10 chr20 13561089 13561677 + 0.666667 NA intron (NM_017714, intron 7 of 13) AluSx|SINE|Alu 77549 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 172.833-18 chr22 46208770 46209132 + 0.666667 NA intron (NM_001001928, intron 3 of 7) L1MA7|LINE|L1 41342 NM_207327 150383 Hs.103110 NM_207327 ENSG00000205643 CDPF1 C22orf40 cysteine rich DPF motif domain containing 1 protein-coding 191.5-49 chr7 93551850 93552236 + 0.666667 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 7767 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 175.167-10 chr12 50953797 50954242 + 0.666667 NA exon (NM_001109619, exon 3 of 5) exon (NM_001109619, exon 3 of 5) 1475 NM_001109619 613227 Hs.702849 NM_001109619 ENSG00000214511 HIGD1C GM921 HIG1 hypoxia inducible domain family member 1C protein-coding 289.333-21 chr4 110839719 110840276 + 0.666667 NA Intergenic Intergenic 20650 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 236.333-6 chr14 25175490 25175945 + 0.666667 NA Intergenic L1MEd|LINE|L1 -125420 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 198-41 chr9 34234652 34234961 + 0.666667 NA intron (NR_033243, intron 4 of 7) Tigger3b|DNA|TcMar-Tigger 55763 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 212.667-48 chr7 141881498 141882061 + 0.666667 NA Intergenic L1MB4|LINE|L1 -37097 NM_001001656 130075 Hs.690171 NM_001001656 ENSG00000258083 OR9A4 - olfactory receptor family 9 subfamily A member 4 protein-coding 217.167 chr1 19878055 19878634 + 0.666667 NA Intergenic LTR9|LTR|ERV1 -4051 NM_015207 23252 Hs.374987 NM_015207 ENSG00000169914 OTUD3 DUBA4 OTU deubiquitinase 3 protein-coding 183.167-25 chr4 94200719 94201041 + 0.666667 NA intron (NR_125922, intron 1 of 8) L1MC5|LINE|L1 6676 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 179.333-5 chr11 10824949 10825258 + 0.666667 NA Intergenic Intergenic 15806 NR_120540 101928053 Hs.637773 NR_120540 ENSG00000246308 LOC101928053 - uncharacterized LOC101928053 ncRNA 217.833-13 chr2 116511903 116512428 + 0.666667 NA Intergenic HAL1|LINE|L1 1168350 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 171.667-20 chr15 67207377 67207801 + 0.666667 NA intron (NM_001271885, intron 7 of 9) L1MC4a|LINE|L1 41434 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 187-28 chr3 111404112 111404696 + 0.666667 NA Intergenic L1M2a|LINE|L1 -137793 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 200.333-2 chr1 32383122 32383578 + 0.666667 NA intron (NM_001143890, intron 2 of 8) AluJb|SINE|Alu 11091 NM_001143889 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 212-22 chr16 81721634 81722050 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR 56488 NR_045112 100129617 Hs.657151 NR_045112 LOC100129617 - uncharacterized LOC100129617 ncRNA 182.667-20 chr16 84572286 84572586 + 0.666667 NA intron (NM_021149, intron 3 of 3) intron (NM_021149, intron 3 of 3) 45642 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 181.167-2 chr1 167219927 167220274 + 0.666667 NA promoter-TSS (NM_002697) promoter-TSS (NM_002697) -785 NM_001365849 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 176-10 chr12 108914062 108914499 + 0.666667 NA intron (NM_018711, intron 15 of 15) L1MB5|LINE|L1 34188 NM_001917 1610 Hs.113227 NM_001917 ENSG00000110887 DAO DAAO|DAMOX|OXDA D-amino acid oxidase protein-coding 181.5-23 chr19 42702670 42703016 + 0.666667 NA Intergenic AluSx|SINE|Alu 37638 NM_021016 5671 Hs.654413 NM_021016 ENSG00000221826 PSG3 - pregnancy specific beta-1-glycoprotein 3 protein-coding 189.667-42 chr5 123349441 123349819 + 0.666667 NA intron (NM_153223, intron 20 of 20) intron (NM_153223, intron 20 of 20) 73962 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 195.5-35 chr8 38660183 38660531 + 0.666667 NA Intergenic Intergenic -59100 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 178.5-33 chr5 120479537 120479956 + 0.666667 NA intron (NM_001308087, intron 1 of 1) intron (NM_001308087, intron 1 of 1) 14115 NM_001308087 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 212.167-6 chr12 62363350 62363719 + 0.666667 NA intron (NR_147080, intron 6 of 19) L2a|LINE|L2 103130 NR_147079 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 178.167-13 chr2 116346206 116346585 + 0.666667 NA Intergenic L3|LINE|CR1 1002580 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 171-58 chr8 69482760 69483279 + 0.666667 NA intron (NM_001128204, intron 1 of 21) MER2|DNA|TcMar-Tigger -9828 NM_001128205 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 259.5-9 chr13 70877880 70878421 + 0.666667 NA Intergenic Intergenic -136991 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 184.333-15 chr14 74328179 74328564 + 0.666667 NA Intergenic Intergenic -20100 NM_018228 55237 Hs.578167 NM_018228 ENSG00000133980 VRTN C14orf115|vertnin vertebrae development associated protein-coding 172.5-12 chr12 1507631 1507960 + 0.666667 NA Intergenic Intergenic 7304 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 353.333-2 chr1 110053135 110054036 + 0.666667 NA intron (NR_073071, intron 21 of 21) intron (NR_073071, intron 21 of 21) 17087 NM_006492 257 Hs.669953 NM_006492 ENSG00000156150 ALX3 FND|FND1 ALX homeobox 3 protein-coding 209.333-2 chr1 41313994 41314440 + 0.666667 NA Intergenic HAL1ME|LINE|L1 -47217 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 196.667-28 chr2 132766585 132766964 + 0.666667 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -95248 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 278.833-4 chr11 11014697 11015364 + 0.666667 NA Intergenic L1ME3Cz|LINE|L1 156813 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 213-36 chr6 148700398 148700992 + 0.666667 NA Intergenic Intergenic -46335 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 254.333-17 chr18 2579082 2579877 + 0.666667 NA intron (NM_006101, intron 6 of 16) AluSx|SINE|Alu 7922 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 186.667-12 chr10 57961617 57961986 + 0.666667 NA Intergenic Intergenic 306093 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 168-7 chr1 248150326 248150793 + 0.666667 NA Intergenic L1PB1|LINE|L1 5411 NM_001004690 127059 Hs.553580 NM_001004690 ENSG00000162727 OR2M5 OR2M5P olfactory receptor family 2 subfamily M member 5 protein-coding 248.667-19 chr2 101882170 101882650 + 0.666667 NA intron (NM_145686, intron 25 of 30) L1ME3B|LINE|L1 -101055 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 226-12 chr12 5267898 5268320 + 0.666667 NA Intergenic MIRc|SINE|MIR -24958 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 251-30 chr6 27684757 27685256 + 0.666667 NA Intergenic AluSq2|SINE|Alu -9029 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 196.833-30 chr9 109047651 109047975 + 0.666667 NA intron (NM_032012, intron 14 of 17) L3b|LINE|CR1 -1515 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 209-23 chr22 32444382 32444731 + 0.666667 NA intron (NM_174932, intron 5 of 14) intron (NM_174932, intron 5 of 14) 12830 NM_174932 254240 Hs.372939 NM_174932 ENSG00000184459 BPIFC BPIL2 BPI fold containing family C protein-coding 185-43 chr9 32344189 32344733 + 0.666667 NA Intergenic Intergenic -40142 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 253-6 chr10 95229581 95230167 + 0.666667 NA TTS (NM_207321) TTS (NM_207321) 35674 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 175.833-27 chr21 30311526 30311817 + 0.666667 NA Intergenic Intergenic 8644 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 220.333-31 chr9 70353194 70353653 + 0.666667 NA 3' UTR (NM_015110, exon 25 of 25) 3' UTR (NM_015110, exon 25 of 25) 61234 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 231.167-13 chr14 69968038 69968427 + 0.666667 NA intron (NM_001034852, intron 3 of 11) MER5A|DNA|hAT-Charlie -9901 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 192.333-34 chr3 50321193 50321500 + 0.666667 NA intron (NM_003773, intron 1 of 3) CpG 1399 NM_003773 8692 Hs.76873 NM_003773 ENSG00000068001 HYAL2 LUCA2 hyaluronidase 2 protein-coding 296.167-10 chr2 41335085 41335757 + 0.666667 NA Intergenic LTR12C|LTR|ERV1 -542134 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 257-12 chr14 88129430 88129938 + 0.666667 NA Intergenic Intergenic -103372 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 203.167-23 chr3 192482684 192483259 + 0.666667 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -32051 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 216.333-11 chr11 111503486 111503869 + 0.666667 NA intron (NM_001367974, intron 1 of 4) intron (NM_001367974, intron 1 of 4) -6925 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 170-22 chr16 56281075 56281561 + 0.666667 NA intron (NM_138736, intron 3 of 7) intron (NM_138736, intron 3 of 7) 35798 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 261-2 chr1 232948159 232948674 + 0.666667 NA Intergenic MLT1A|LTR|ERVL-MaLR -2195 NM_001329453 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 224-2 chr1 59956029 59956577 + 0.666667 NA Intergenic Intergenic -29505 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 203.833-14 chr2 241702311 241702702 + 0.666667 NA intron (NM_032329, intron 1 of 7) CpG 467 NM_001330162 84289 Hs.529172 NM_032329 ENSG00000168395 ING5 p28ING5 inhibitor of growth family member 5 protein-coding 178.167-11 chr2 66463755 66464427 + 0.666667 NA intron (NM_002398, intron 6 of 12) intron (NM_002398, intron 6 of 12) -23761 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 167.333-46 chr6 36024993 36025472 + 0.666667 NA promoter-TSS (NM_138718) promoter-TSS (NM_138718) -591 NM_052961 116369 Hs.435836 NM_052961 ENSG00000112053 SLC26A8 SPGF3|TAT1 solute carrier family 26 member 8 protein-coding 278-27 chr8 71165319 71165844 + 0.666667 NA Intergenic Intergenic 191125 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 196.333-36 chr5 7353142 7353491 + 0.666667 NA Intergenic Intergenic -5339 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 242.667-9 chr15 62076092 62076587 + 0.666667 NA Intergenic MIRb|SINE|MIR 9362 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 170.667-57 chr9 32424198 32424514 + 0.666667 NA intron (NM_001278352, intron 10 of 21) intron (NM_001278352, intron 10 of 21) 39713 NM_001362840 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 180-61 chr8 128168083 128168477 + 0.666667 NA Intergenic MIRb|SINE|MIR 18164 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 179-15 chr14 26930215 26930529 + 0.666667 NA Intergenic HAL1|LINE|L1 21730 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 174.5-15 chr2 43766023 43766493 + 0.666667 NA 3' UTR (NM_172069, exon 30 of 30) 3' UTR (NM_172069, exon 30 of 30) -7781 NM_015522 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 181.833-26 chr8 54881857 54882488 + 0.666667 NA Intergenic Intergenic -219856 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 233.333-2 chr1 172141948 172142544 + 0.666667 NA non-coding (NR_038397, exon 1 of 1) non-coding (NR_038397, exon 1 of 1) 2398 NR_029618 406977 NR_029618 ENSG00000208024 MIR199A2 MIR-199-s|MIRN199A2|mir-199a-2 microRNA 199a-2 ncRNA 212.5-29 chr5 43661922 43662461 + 0.666667 NA intron (NM_012343, intron 17 of 21) intron (NM_012343, intron 17 of 21) -58961 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 199.667-30 chr3 184623800 184624219 + 0.666667 NA Intergenic AluSx|SINE|Alu 62224 NM_004443 2049 Hs.2913 NM_004443 ENSG00000182580 EPHB3 EK2|ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 190.667-34 chr22 40051582 40051992 + 0.666667 NA intron (NM_001024843, intron 1 of 23) MER33|DNA|hAT-Charlie 6970 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 199.333-46 chr8 101936201 101936681 + 0.666667 NA intron (NM_001040624, intron 3 of 7) L2|LINE|L2 -47991 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 191-22 chr16 86341285 86341799 + 0.666667 NA intron (NR_024406, intron 1 of 6) intron (NR_024406, intron 1 of 6) 4137 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 173.833-10 chr11 28497516 28497814 + 0.666667 NA Intergenic MLT1A1|LTR|ERVL-MaLR -20117 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 169.667-35 chr2 69657468 69657872 + 0.666667 NA intron (NM_001320698, intron 2 of 14) Charlie2a|DNA|hAT-Charlie 13862 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 164.333-6 chr1 210598517 210598869 + 0.666667 NA intron (NM_001122834, intron 10 of 11) L1MA3|LINE|L1 269327 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 187.667-27 chr2 42856786 42857275 + 0.666667 NA Intergenic MIR1_Amn|SINE|MIR -64447 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 194-11 chr11 17267928 17268470 + 0.666667 NA Intergenic MER5A1|DNA|hAT-Charlie -8515 NM_001352669 4925 Hs.654599 NM_005013 ENSG00000070081 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 253.167-20 chr7 7857881 7858590 + 0.666667 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) 110517 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 169.5-42 chr6 158057691 158058058 + 0.666667 NA intron (NM_003898, intron 6 of 26) intron (NM_003898, intron 6 of 26) 40781 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 183.333-55 chr5 178825750 178826114 + 0.666667 NA Intergenic Intergenic -7497 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 178.167-19 chr4 33064933 33065267 + 0.666667 NA Intergenic Intergenic 714062 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 164.167-54 chr9 24221502 24221969 + 0.666667 NA Intergenic Intergenic 323941 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 167.333-8 chr10 122162946 122163244 + 0.666667 NA promoter-TSS (NM_006997) promoter-TSS (NM_006997) -535 NM_006997 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 171.5-38 chr5 163566597 163567118 + 0.666667 NA Intergenic Intergenic 61238 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 256.667-18 chr3 156024613 156025033 + 0.666667 NA Intergenic L1ME4c|LINE|L1 -95725 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 279.833-9 chr20 7311525 7312278 + 0.666667 NA Intergenic Intergenic -4469 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 181.333-43 chr8 129409599 129410011 + 0.666667 NA intron (NR_130920, intron 1 of 3) L4_C_Mam|LINE|RTE-X 74337 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 234.833-12 chr16 62248730 62249334 + 0.666667 NA Intergenic Intergenic -212594 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 178.833-31 chr5 21011262 21011554 + 0.666667 NA Intergenic Intergenic -395873 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 163.334-2 chr17 75776661 75777178 + 0.666667 NA 3' UTR (NM_005324, exon 4 of 4) 3' UTR (NM_005324, exon 4 of 4) 2860 NM_005324 3021 Hs.180877 NM_005324 ENSG00000132475 H3F3B H3.3B H3 histone family member 3B protein-coding 163.333-33 chr2 216753617 216754081 + 0.666667 NA Intergenic Intergenic -58300 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 213.333-44 chr7 146219855 146220328 + 0.666667 NA Intergenic Intergenic -554180 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 179.333-27 chr2 155808693 155809036 + 0.666667 NA Intergenic Intergenic 446067 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 203.167-30 chr7 2522920 2523351 + 0.666667 NA intron (NM_001040168, intron 1 of 7) intron (NM_001040168, intron 1 of 7) 3361 NM_001040167 3955 Hs.159142 NM_002304 ENSG00000106003 LFNG SCDO3 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 166.667-17 chr16 5622019 5622580 + 0.666667 NA Intergenic Intergenic -6049 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 189.333-11 chr12 115753302 115753750 + 0.666667 NA Intergenic Intergenic 395128 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 176.167-25 chr20 15848032 15848487 + 0.666667 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 75055 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 232.167-10 chr18 67104467 67104930 + 0.666667 NA Intergenic Intergenic 23114 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 168-45 chr6 37144405 37144890 + 0.666667 NA Intergenic Intergenic -25505 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 172.667-53 chr7 85581575 85581943 + 0.666667 NA Intergenic Intergenic 160637 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 266.666-4 chr14 100753347 100754049 + 0.666667 NA Intergenic L1MB8|LINE|L1 26806 NM_001317172 8788 Hs.116631 NM_003836 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta like non-canonical Notch ligand 1 protein-coding 193.834-2 chr11 59441305 59441825 + 0.666667 NA Intergenic Intergenic -1604 NM_001004728 219982 Hs.553649 NM_001004728 ENSG00000172320 OR5A1 OR11-249|OR5A1P|OST181 olfactory receptor family 5 subfamily A member 1 protein-coding 182.833-9 chr11 6736188 6736629 + 0.666667 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR -14529 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 192.333-47 chr6 154574521 154575001 + 0.666667 NA Intergenic AluSz6|SINE|Alu -64076 NM_001368117 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 180.333-10 chr11 58454749 58455184 + 0.666667 NA Intergenic L1MA8|LINE|L1 -14793 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 187-27 chr3 104271932 104272515 + 0.666667 NA Intergenic MER65-int|LTR|ERV1 -748107 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 273-23 chr6 18306461 18306948 + 0.666667 NA Intergenic Intergenic -42174 NM_001134709 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 191-26 chr2 50287491 50287834 + 0.666667 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 60092 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 207.667-9 chr12 13380665 13381091 + 0.666667 NA Intergenic L2a|LINE|L2 -4133 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 246.334-5 chr22 50621046 50621940 + 0.666667 NA Intergenic L1ME3|LINE|L1 6659 NM_001085428 410 Hs.88251 NM_000487 ENSG00000100299 ARSA ASA|MLD arylsulfatase A protein-coding 205.667-46 chr8 141128667 141128994 + 0.666667 NA intron (NM_014957, intron 1 of 22) CpG 241 NM_001352891 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 165-35 chr3 55735448 55735870 + 0.666667 NA intron (NR_132749, intron 13 of 17) MSTD|LTR|ERVL-MaLR -76190 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 214.667-43 chr9 3738403 3738819 + 0.666667 NA Intergenic Tigger18a|DNA|TcMar-Tigger 70525 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 164.167-13 chr12 46380111 46380560 + 0.666667 NA Intergenic MLT1F|LTR|ERVL-MaLR -3341 NR_125380 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 186.333-3 chr1 110219041 110219387 + 0.666667 NA intron (NM_004978, intron 1 of 3) MIR3|SINE|MIR 8900 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 277.667-12 chr17 1865258 1865698 + 0.666667 NA intron (NM_001355120, intron 5 of 16) intron (NM_001355120, intron 5 of 16) 35473 NM_001355120 6117 Hs.461925 NM_002945 ENSG00000132383 RPA1 HSSB|MST075|REPA1|RF-A|RP-A|RPA70 replication protein A1 protein-coding 277 chr1 14486094 14486698 + 0.666667 NA Intergenic Intergenic -66423 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 218.667-22 chr20 33909235 33909781 + 0.666667 NA Intergenic L1ME1|LINE|L1 -84403 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 246.333-25 chr2 126870267 126870691 + 0.666667 NA Intergenic L1ME2|LINE|L1 -28411 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 205.333-41 chr5 164161735 164162324 + 0.666667 NA Intergenic Intergenic 305373 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 265-13 chr3 14640167 14640781 + 0.666667 NA Intergenic Intergenic -11272 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 238-31 chr5 173655587 173656365 + 0.666667 NA Intergenic MLT1G1|LTR|ERVL-MaLR -33483 NR_146727 105377736 Hs.582570 NR_146727 ENSG00000253428 LINC01942 - long intergenic non-protein coding RNA 1942 ncRNA 216.667-42 chr5 163459843 163460389 + 0.666667 NA promoter-TSS (NR_138426) promoter-TSS (NR_138426) -14 NM_145266 134492 Hs.140443 NM_145266 ENSG00000170584 NUDCD2 NudCL2 NudC domain containing 2 protein-coding 167.5-13 chr12 77684285 77684735 + 0.666667 NA Intergenic AluJr|SINE|Alu -146384 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 174.333-27 chr3 180602163 180602622 + 0.666667 NA exon (NM_133462, exon 1 of 12) exon (NM_133462, exon 1 of 12) 229 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 172-22 chr17 73514014 73514283 + 0.666667 NA intron (NR_135635, intron 1 of 1) intron (NR_135635, intron 1 of 1) 465 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 176.167-3 chr1 103537352 103537781 + 0.666667 NA intron (NM_017619, intron 7 of 14) intron (NM_017619, intron 7 of 14) 11867 NM_017619 55599 Hs.632423 NM_017619 ENSG00000185946 RNPC3 IGHD5|RBM40|RNP|SNRNP65 RNA binding region (RNP1, RRM) containing 3 protein-coding 235.833-12 chr21 29181752 29182158 + 0.666667 NA Intergenic Intergenic -11539 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 187.333-42 chr7 61732834 61733311 + 0.666667 NA Intergenic ALR/Alpha|Satellite|centr 1570984 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 168.167-30 chr5 89151320 89151886 + 0.666667 NA intron (NR_136219, intron 6 of 9) L1MA4A|LINE|L1 -247498 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 188-15 chr15 61618555 61618974 + 0.666667 NA Intergenic L1MB1|LINE|L1 -111154 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 195-44 chr8 86418362 86418709 + 0.666667 NA intron (NM_007013, intron 9 of 24) HAL1|LINE|L1 75988 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 171.667-6 chr1 224633228 224633621 + 0.666667 NA intron (NM_152495, intron 1 of 5) AluSz6|SINE|Alu 17107 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 224.667-23 chr2 54175814 54176351 + 0.666667 NA intron (NM_138448, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR 52799 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 195.667-5 chr10 87752577 87753044 + 0.666667 NA non-coding (NR_135914, exon 11 of 11) non-coding (NR_135914, exon 11 of 11) 65421 NM_001321967 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 223.333-30 chr3 193780337 193780923 + 0.666667 NA Intergenic Intergenic 63379 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 275.667-31 chr9 132055999 132056533 + 0.666667 NA intron (NM_001253881, intron 2 of 6) intron (NM_001253881, intron 2 of 6) 23601 NM_004269 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 202.167-38 chr8 116669784 116670163 + 0.666667 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 17873 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 181.667-28 chr2 227866761 227867037 + 0.666667 NA Intergenic Intergenic -4477 NM_001330004 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 184.667-4 chr1 201576884 201577259 + 0.666667 NA Intergenic AluJb|SINE|Alu 57167 NR_026667 376693 Hs.605989 NR_026667 RPS10P7 RPS10_2_147 ribosomal protein S10 pseudogene 7 pseudo 216.667-9 chr12 41702241 41702735 + 0.666667 NA Intergenic Intergenic -61701 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 413.667-7 chr20 63284994 63285715 + 0.666667 NA intron (NM_001281482, intron 10 of 13) intron (NM_001281482, intron 10 of 13) 1042 NR_104023 55738 Hs.25584 NM_018209 ENSG00000101199 ARFGAP1 ARF1GAP|HRIHFB2281 ADP ribosylation factor GTPase activating protein 1 protein-coding 186.833-5 chr13 44120762 44121181 + 0.666667 NA intron (NR_104065, intron 1 of 4) intron (NR_104065, intron 1 of 4) 10422 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 189-56 chr8 136791807 136792162 + 0.666667 NA intron (NR_147196, intron 3 of 5) intron (NR_147196, intron 3 of 5) 261186 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 221.666-5 chr16 56140325 56140959 + 0.666667 NA intron (NR_027078, intron 2 of 4) intron (NR_027078, intron 2 of 4) 50452 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 205-11 chr2 63699712 63700116 + 0.666667 NA Intergenic Intergenic 110763 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 226-32 chr3 51034075 51034631 + 0.666667 NA intron (NM_004947, intron 5 of 52) L1MEf|LINE|L1 -350938 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 164-5 chr10 21882138 21882525 + 0.666667 NA exon (NM_022365, exon 8 of 12) exon (NM_022365, exon 8 of 12) 121399 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 196-34 chr4 45583076 45583539 + 0.666667 NA Intergenic L1MA4|LINE|L1 540747 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 185.5-2 chr1 42909820 42910155 + 0.666667 NA Intergenic ERVL-B4-int|LTR|ERVL 48881 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 174.167-3 chr10 28980126 28980608 + 0.666667 NA Intergenic Intergenic 133959 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 202.667-9 chr14 22111203 22111850 + 0.666667 NA Intergenic Intergenic 321227 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 222.167-41 chr8 95269706 95270298 + 0.666667 NA promoter-TSS (NM_177965) promoter-TSS (NM_177965) -801 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 202.667-42 chr8 117337061 117337468 + 0.666667 NA Intergenic Intergenic -183449 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 310.167-3 chr11 46483056 46483655 + 0.666667 NA intron (NM_001267782, intron 13 of 19) intron (NM_001267782, intron 13 of 19) -31466 NR_036117 100422827 NR_036117 ENSG00000265014 MIR3160-1 mir-3160-1 microRNA 3160-1 ncRNA 164.333-33 chr22 48276103 48276450 + 0.666667 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 1912 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 219.667-16 chr2 14516979 14517437 + 0.666667 NA Intergenic Intergenic -115509 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 173.833-27 chr5 14870373 14870859 + 0.666667 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 1162 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 258-31 chr6 166732166 166732941 + 0.666667 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -105302 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 185.333-4 chr10 18505389 18505913 + 0.666667 NA intron (NM_201593, intron 5 of 13) intron (NM_201593, intron 5 of 13) 105076 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 174.167-24 chr2 227033606 227034135 + 0.666667 NA intron (NM_000092, intron 37 of 47) intron (NM_000092, intron 37 of 47) 130689 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 218.666-6 chr16 68582467 68583104 + 0.666667 NA Intergenic Intergenic 43494 NM_133458 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 181.167-35 chr8 121614792 121615185 + 0.666667 NA exon (NM_005328, exon 4 of 4) exon (NM_005328, exon 4 of 4) -24358 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 174.167-25 chr20 55998662 55998961 + 0.666667 NA intron (NM_080617, intron 2 of 2) intron (NM_080617, intron 2 of 2) 6708 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 185.167-5 chr11 65314287 65314713 + 0.666667 NA promoter-TSS (NM_006779) promoter-TSS (NM_006779) -366 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding 204-26 chr22 48816672 48817050 + 0.666667 NA Intergenic Tigger2a|DNA|TcMar-Tigger 36566 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 236.833-20 chr5 178167739 178168169 + 0.666667 NA Intergenic L1PA16|LINE|L1 -13994 NM_017838 55651 Hs.744074 NM_017838 ENSG00000145912 NHP2 DKCB2|NHP2P|NOLA2 NHP2 ribonucleoprotein protein-coding 265.5-16 chr20 57935823 57936300 + 0.666667 NA Intergenic LTR8A|LTR|ERV1 -67843 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 214.333-41 chrX 97177781 97178301 + 0.666667 NA intron (NM_007309, intron 22 of 26) AluJb|SINE|Alu 294133 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 166.667-42 chr4 2476522 2477069 + 0.666667 NA intron (NM_001185009, intron 2 of 8) 7SLRNA|srpRNA|srpRNA 7342 NM_001185009 6047 Hs.66394 NM_002938 ENSG00000063978 RNF4 RES4-26|SLX5|SNURF ring finger protein 4 protein-coding 167.333-30 chr2 108102946 108103343 + 0.666667 NA Intergenic MamTip2|DNA|hAT-Tip100 -50389 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 164.167-47 chr6 116476288 116476703 + 0.666667 NA Intergenic Intergenic 15120 NM_001010919 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 200.667-45 chr6 45231016 45231482 + 0.666667 NA intron (NM_001350325, intron 2 of 10) L1M2|LINE|L1 -33479 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 220-21 chr4 82072772 82073252 + 0.666667 NA Intergenic Intergenic 300979 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 218.667-25 chr3 36124280 36124666 + 0.666667 NA Intergenic L1M1|LINE|L1 -256014 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 177.833-5 chr10 44981354 44981679 + 0.666667 NA intron (NM_032023, intron 3 of 10) intron (NM_032023, intron 3 of 10) -2707 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 DEPP1 C10orf10|DEPP|FIG|Fseg DEPP1 autophagy regulator protein-coding 174-47 chr8 112462980 112463304 + 0.666667 NA intron (NM_052900, intron 31 of 68) AluSg|SINE|Alu -180351 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 193-31 chr5 124706024 124706359 + 0.666667 NA intron (NM_020747, intron 1 of 8) MIRb|SINE|MIR 38921 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 169.333-18 chr12 15155650 15156099 + 0.666667 NA TTS (NR_046559) TTS (NR_046559) 3951 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 293.667-13 chr2 152282059 152282575 + 0.666667 NA Intergenic Intergenic -52857 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 164.667-7 chr1 225230185 225230876 + 0.666667 NA intron (NM_001367479, intron 41 of 85) intron (NM_001367479, intron 41 of 85) 197508 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 188.333-44 chr9 96416479 96416846 + 0.666667 NA intron (NM_153695, intron 1 of 4) intron (NM_153695, intron 1 of 4) 1708 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 233.5-10 chr15 89913015 89913416 + 0.666667 NA promoter-TSS (NM_182616) promoter-TSS (NM_182616) -263 NM_001199058 100526783 NM_001199058 ENSG00000250021 ARPIN-AP3S2 ARPIN|C15orf38|C15orf38-AP3S2 ARPIN-AP3S2 readthrough protein-coding 166.667-26 chr2 12302983 12303423 + 0.666667 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 104073 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 177.833 chr1 19339623 19340182 + 0.666667 NA intron (NM_001206541, intron 8 of 8) intron (NM_001206541, intron 8 of 8) 27576 NM_001287531 54896 Hs.647620 NM_017765 ENSG00000040487 SLC66A1 LAAT-1|LAAT1|PQLC2 solute carrier family 66 member 1 protein-coding 163.667-12 chr11 109606617 109607024 + 0.666667 NA Intergenic MIRc|SINE|MIR 184630 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 193.666-4 chr12 98514661 98515214 + 0.666667 NA promoter-TSS (NM_003276) promoter-TSS (NM_003276) -636 NM_001032283 7112 Hs.11355 NM_003276 ENSG00000120802 TMPO CMD1T|LAP2|LEMD4|PRO0868|TP thymopoietin protein-coding 171.667-33 chr2 240144008 240144508 + 0.666667 NA Intergenic MSTD|LTR|ERVL-MaLR -3600 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 207.667-3 chr1 225043492 225044001 + 0.666667 NA exon (NM_001367479, exon 14 of 86) exon (NM_001367479, exon 14 of 86) 114071 NM_001145154 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 199.834-7 chr6 47990878 47991579 + 0.666667 NA intron (NM_207499, intron 2 of 2) L1MEd|LINE|L1 77461 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 168.5-44 chr7 50244445 50245163 + 0.666667 NA Intergenic Intergenic -59260 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 222.5-13 chr12 26640549 26641135 + 0.666667 NA intron (NM_002223, intron 21 of 56) intron (NM_002223, intron 21 of 56) 192352 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 227.667-7 chr10 103670746 103671149 + 0.666667 NA intron (NM_014631, intron 6 of 13) intron (NM_014631, intron 6 of 13) 7268 NM_001365079 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 175.333-16 chr14 75187617 75188026 + 0.666667 NA Intergenic MER5B|DNA|hAT-Charlie -11209 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 208-15 chr14 57640073 57640438 + 0.666667 NA intron (NM_001352014, intron 1 of 9) LTR89|LTR|ERVL? -146398 NM_001283056 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 180.333-48 chr7 11737705 11738003 + 0.666667 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 94344 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 236.333-19 chr3 114287136 114287579 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -6671 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 286.333 chr10 48609943 48610476 + 0.666667 NA intron (NM_001347738, intron 2 of 10) intron (NM_001347738, intron 2 of 10) -5078 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 179.333-17 chr16 11151609 11152052 + 0.666667 NA intron (NM_015226, intron 21 of 22) intron (NM_015226, intron 21 of 22) 104352 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 179.333-25 chr2 76068339 76068791 + 0.666667 NA Intergenic Intergenic -357650 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 273.333 chr1 32072676 32073222 + 0.666667 NA promoter-TSS (NM_018056) promoter-TSS (NM_018056) 10 NM_001319679 55116 Hs.25544 NM_018056 ENSG00000121775 TMEM39B - transmembrane protein 39B protein-coding 176.833-23 chr20 43722422 43722763 + 0.666667 NA Intergenic AluJo|SINE|Alu 4410 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 164.333-24 chr19 10913659 10913967 + 0.666667 NA intron (NM_001370089, intron 5 of 14) intron (NM_001370089, intron 5 of 14) 14826 NM_024029 78992 Hs.164026 NM_024029 ENSG00000130733 YIPF2 FinGER2 Yip1 domain family member 2 protein-coding 188.5-7 chr10 107136664 107137100 + 0.666667 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 27824 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 196.667-19 chr16 35286054 35286575 + 0.666667 NA Intergenic L1M4c|LINE|L1 -77102 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 237-4 chr1 211285859 211286272 + 0.666667 NA intron (NM_018254, intron 6 of 10) L1MEd|LINE|L1 26118 NM_018254 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 223-15 chr18 22280263 22280747 + 0.666667 NA Intergenic L4_B_Mam|LINE|RTE-X 111068 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 204.5-11 chr14 20990609 20990998 + 0.666667 NA intron (NM_022734, intron 3 of 13) intron (NM_022734, intron 3 of 13) 823 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 195.833-6 chr11 69075626 69076010 + 0.666667 NA intron (NM_139075, intron 13 of 24) intron (NM_139075, intron 13 of 24) -7358 NR_036122 100422846 NR_036122 ENSG00000265539 MIR3164 - microRNA 3164 ncRNA 174.167-36 chr6 56536276 56536807 + 0.666667 NA intron (NM_001144770, intron 54 of 94) MER102a|DNA|hAT-Charlie 106348 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 234.333-38 chr8 143906732 143907247 + 0.666667 NA Intergenic L1M4|LINE|L1 -28525 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 207.667-20 chr18 72041515 72042061 + 0.666667 NA Intergenic AluSz|SINE|Alu -259562 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 216.5-22 chr19 45443604 45443974 + 0.666667 NA intron (NM_001369412, intron 1 of 9) intron (NM_001369412, intron 1 of 9) 6977 NM_001369417 2067 Hs.435981 NM_001983 ENSG00000012061 ERCC1 COFS4|RAD10|UV20 ERCC excision repair 1, endonuclease non-catalytic subunit protein-coding 195.667-43 chr8 79788766 79789261 + 0.666667 NA intron (NR_125410, intron 3 of 3) MIR|SINE|MIR 20871 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 169.5-32 chr4 20684529 20684978 + 0.666667 NA Intergenic Intergenic -11529 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 188-38 chr4 72569547 72569897 + 0.666667 NA promoter-TSS (NM_014243) promoter-TSS (NM_014243) -501 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 215.333-37 chr6 62043718 62044208 + 0.666667 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 242262 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 204.833-4 chr10 52710369 52710978 + 0.666667 NA intron (NR_155748, intron 1 of 2) AluSz|SINE|Alu 44731 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 238.333-36 chr6 83941115 83941649 + 0.666667 NA intron (NM_016230, intron 14 of 15) intron (NM_016230, intron 14 of 15) 81693 NM_016230 51167 Hs.5741 NM_016230 ENSG00000065615 CYB5R4 NCB5OR|cb5/cb5R|dJ676J13.1 cytochrome b5 reductase 4 protein-coding 237.833-14 chr3 130538352 130538740 + 0.666667 NA Intergenic MIR|SINE|MIR -21788 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 197-19 chr20 45531016 45531371 + 0.666667 NA Intergenic (TCTCTT)n|Simple_repeat|Simple_repeat 8289 NM_080827 140870 Hs.673237 NM_080827 ENSG00000243543 WFDC6 C20orf171|HEL-S-295|WAP6|dJ461P17.11 WAP four-disulfide core domain 6 protein-coding 188-40 chr5 25823061 25823348 + 0.666667 NA Intergenic LTR12E|LTR|ERV1 632251 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 243.333-6 chr10 106006084 106006768 + 0.666667 NA Intergenic Intergenic -133739 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 198-34 chr6 23815195 23815755 + 0.666667 NA Intergenic Intergenic -310740 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 167.667-50 chr9 10571586 10571897 + 0.666667 NA intron (NM_002839, intron 2 of 45) MER1B|DNA|hAT-Charlie 41261 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 189.333-42 chr9 4763522 4764003 + 0.666667 NA Intergenic Intergenic -21719 NM_001199853 50808 Hs.732022 NM_016282 ENSG00000147853 AK3 AK3L1|AK6|AKL3L|AKL3L1|FIX adenylate kinase 3 protein-coding 183.167-14 chr17 59217309 59217902 + 0.666667 NA Intergenic Intergenic -2906 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 174.833-27 chr8 140830360 140830832 + 0.666667 NA intron (NM_001352746, intron 4 of 30) intron (NM_001352746, intron 4 of 30) -97943 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 172.833 chr1 67234239 67234690 + 0.666667 NA intron (NM_144701, intron 7 of 10) intron (NM_144701, intron 7 of 10) 68010 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 216-39 chr4 188900699 188901088 + 0.666667 NA Intergenic L2b|LINE|L2 124236 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 176-41 chr8 31544299 31544594 + 0.666667 NA Intergenic L1MA4|LINE|L1 -95306 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 229.666-2 chr1 205346486 205347168 + 0.666667 NA intron (NM_001271863, intron 3 of 8) intron (NM_001271863, intron 3 of 8) 10095 NM_018203 55220 Hs.10414 NM_018203 ENSG00000162873 KLHDC8A - kelch domain containing 8A protein-coding 164.667-3 chr1 92298696 92299009 + 0.666667 NA promoter-TSS (NM_024813) promoter-TSS (NM_024813) 135 NM_053274 11146 Hs.49105 NM_007070 ENSG00000174842 GLMN FAP|FAP48|FAP68|FKBPAP|GLML|GVM|VMGLOM glomulin, FKBP associated protein protein-coding 177.5-10 chr12 7053324 7053744 + 0.666667 NA Intergenic L1PA8A|LINE|L1 -7184 NM_001734 716 Hs.458355 NM_001734 ENSG00000182326 C1S EDSPD2 complement C1s protein-coding 229.5-32 chr5 44735493 44736119 + 0.666667 NA Intergenic LTR16C|LTR|ERVL 72987 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 179.667-8 chr13 78122493 78122886 + 0.666667 NA intron (NR_047001, intron 1 of 5) MER4A1_|LTR|ERV1 67834 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 175.333-36 chr3 28509205 28509550 + 0.666667 NA intron (NM_001040432, intron 6 of 9) L1MB8|LINE|L1 -65901 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 270.667-16 chr4 33648614 33649193 + 0.666667 NA Intergenic Intergenic 390990 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 210.333-18 chr19 55815082 55815453 + 0.666667 NA intron (NM_001297743, intron 1 of 8) AluSx1|SINE|Alu 16827 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 214.333-25 chr22 26990561 26990920 + 0.666667 NA Intergenic Intergenic 69778 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 225.333-17 chr16 75750431 75750970 + 0.666667 NA Intergenic MIRb|SINE|MIR -24210 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 184.833-25 chr5 13405 13863 + 0.666667 NA Intergenic Intergenic -78534 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 253.667-27 chr3 58585060 58585746 + 0.666667 NA intron (NM_001282714, intron 2 of 4) intron (NM_001282714, intron 2 of 4) 1611 NM_001282713 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 282.667-3 chr1 183794960 183795827 + 0.666667 NA intron (NM_001297669, intron 3 of 18) L2b|LINE|L2 -9727 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 168-24 chr18 24131750 24132337 + 0.666667 NA intron (NM_001135993, intron 13 of 13) intron (NM_001135993, intron 13 of 13) -6913 NM_001308231 26256 Hs.511983 NM_012189 ENSG00000154040 CABYR CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2 calcium binding tyrosine phosphorylation regulated protein-coding 247.667-4 chr10 114192717 114193138 + 0.666667 NA intron (NM_198795, intron 3 of 25) L1MD1|LINE|L1 13574 NM_001365891 56165 Hs.333132 NM_198795 ENSG00000095627 TDRD1 CT41.1 tudor domain containing 1 protein-coding 166-63 chr7 13325508 13325883 + 0.666667 NA Intergenic Intergenic 638062 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 168-41 chr5 30318688 30318996 + 0.666667 NA Intergenic Arthur1B|DNA|hAT-Tip100 438282 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 168.833-5 chr1 210239543 210240018 + 0.666667 NA intron (NM_001354173, intron 3 of 4).2 intron (NM_001354173, intron 3 of 4).2 -5895 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 226.167-22 chr7 74451851 74452433 + 0.666667 NA Intergenic AluSz6|SINE|Alu -1764 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 172.333-56 chr9 126144291 126144730 + 0.666667 NA Intergenic L1MEd|LINE|L1 131405 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 216-21 chr16 77344580 77345133 + 0.666667 NA intron (NM_199355, intron 10 of 22) intron (NM_199355, intron 10 of 22) 90178 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 201.333-26 chr2 186112390 186112869 + 0.666667 NA Intergenic L1MA7|LINE|L1 -26312 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 169.833-38 chr5 145291391 145291767 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR 543763 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 177.5-36 chr3 38738863 38739250 + 0.666667 NA intron (NM_006514, intron 14 of 26) MIRb|SINE|MIR 54954 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 271.667-10 chr14 54828855 54829283 + 0.666667 NA Intergenic Intergenic 49124 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 237.667-37 chr7 91560264 91560819 + 0.666667 NA Intergenic L2a|LINE|L2 296108 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 201.667-27 chr20 34676315 34676654 + 0.666667 NA intron (NM_080476, intron 1 of 11) intron (NM_080476, intron 1 of 11) 801 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 183.167-6 chr11 77561704 77562023 + 0.666667 NA Intergenic L1MA3|LINE|L1 -9226 NR_130930 646029 Hs.609654 NM_001039908 LOC646029 - uncharacterized LOC646029 ncRNA 171-20 chr15 95222667 95223279 + 0.666667 NA Intergenic L1MA8|LINE|L1 104127 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 173-37 chr7 35805289 35805623 + 0.666667 NA intron (NM_001788, intron 1 of 12) MER5C|DNA|hAT-Charlie 4237 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 191.333-29 chr3 100402357 100402721 + 0.666667 NA intron (NM_001085451, intron 1 of 3) intron (NM_001085451, intron 1 of 3) 1000 NM_001085451 348801 Hs.591294 NM_001085451 ENSG00000206535 LNP1 NP3 leukemia NUP98 fusion partner 1 protein-coding 173.333-7 chr12 54720204 54720648 + 0.666667 NA Intergenic LTR37B|LTR|ERV1 -72061 NM_001300854 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 180.833-2 chr1 171800994 171801575 + 0.666667 NA Intergenic Intergenic 19624 NM_014955 51603 Hs.494705 NM_014955 ENSG00000010165 EEF1AKNMT 5630401D24Rik|CGI-01|DFNB26|DFNB26M|KIAA0859|METTL13|feat eEF1A lysine and N-terminal methyltransferase protein-coding 165.667-57 chrX 19593663 19594243 + 0.666667 NA intron (NM_001024666, intron 9 of 16) intron (NM_001024666, intron 9 of 16) 77046 NM_001184960 30011 Hs.726365 NM_031892 ENSG00000147010 SH3KBP1 AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18 SH3 domain containing kinase binding protein 1 protein-coding 189.667-28 chr2 191380367 191380832 + 0.666667 NA intron (NM_012223, intron 13 of 28) intron (NM_012223, intron 13 of 28) 135195 NM_012223 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 236.667-12 chr2 34906073 34906706 + 0.666667 NA Intergenic Intergenic 228832 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 223.667-40 chr5 34010104 34010573 + 0.666667 NA intron (NR_037951, intron 6 of 8) MER11A|LTR|ERVK -2288 NM_014324 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 210.167-7 chr10 28997107 28997558 + 0.666667 NA Intergenic Intergenic 150924 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 178.667-17 chr17 59367556 59367845 + 0.666667 NA intron (NM_001005404, intron 2 of 4) MamSINE1|SINE|tRNA-RTE 1617 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 196.333-21 chr2 39193829 39194273 + 0.666667 NA intron (NM_001009565, intron 4 of 7) L1ME4a|LINE|L1 35537 NR_144520 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 181.167 chr1 158019043 158019640 + 0.666667 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) -6209 NR_145471 100505785 Hs.664656 NR_145471 KIRREL1-IT1 KIRREL-IT1 KIRREL1 intronic transcript 1 ncRNA 213.667-40 chr5 63916376 63917024 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 45592 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 164.5-26 chr2 39949903 39950317 + 0.666667 NA intron (NR_038441, intron 2 of 4) L1MC4a|LINE|L1 32476 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 217.833-9 chr15 70813441 70813982 + 0.666667 NA Intergenic Intergenic -39528 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 180-27 chr17 51641220 51641639 + 0.666667 NA intron (NM_001082533, intron 7 of 9) intron (NM_001082533, intron 7 of 9) 206002 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 234.667-36 chr9 131180009 131180487 + 0.666667 NA intron (NM_001318324, intron 24 of 35) intron (NM_001318324, intron 24 of 35) -9891 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 243-21 chr7 875281 876014 + 0.666667 NA promoter-TSS (NM_015949) promoter-TSS (NM_015949) -907 NM_015949 51608 Hs.107387 NM_015949 ENSG00000239857 GET4 C7orf20|CEE|CGI-20|TRC35 guided entry of tail-anchored proteins factor 4 protein-coding 202.167-6 chr11 33218522 33219017 + 0.666667 NA Intergenic AluSz|SINE|Alu -37903 NM_001278163 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 189-6 chr10 20929341 20929691 + 0.666667 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -31914 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 198.333-14 chr11 82827575 82827962 + 0.666667 NA intron (NM_199418, intron 9 of 9) L1MB8|LINE|L1 72662 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 208.333-29 chr4 53653647 53654188 + 0.666667 NA Intergenic Intergenic -41984 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 229-18 chr3 22658998 22659624 + 0.666667 NA Intergenic L1M4|LINE|L1 543267 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 173.667-17 chr14 51864440 51864980 + 0.666667 NA intron (NM_001243774, intron 1 of 2) intron (NM_001243774, intron 1 of 2) 4098 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 216.5-13 chr12 30252162 30252564 + 0.666667 NA Intergenic Intergenic 424881 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 182.833-8 chr10 31156781 31157499 + 0.666667 NA Intergenic Intergenic -30743 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 243-5 chr11 72950645 72951474 + 0.666667 NA intron (NM_014824, intron 8 of 19) MLT1J1|LTR|ERVL-MaLR 136648 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 172.334 chr11 129965897 129966396 + 0.666667 NA intron (NM_199437, intron 1 of 20) AluSq|SINE|Alu -10116 NM_001367895 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7|TRIS PR/SET domain 10 protein-coding 165.5-22 chr18 68223201 68223595 + 0.666667 NA Intergenic Intergenic -408576 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 239.666-5 chr7 28710006 28710676 + 0.666667 NA intron (NM_001011666, intron 1 of 6) L2a|LINE|L2 24208 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 181.667-9 chr11 25344499 25345021 + 0.666667 NA Intergenic L2a|LINE|L2 -844363 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 204.333-14 chr13 113144914 113145598 + 0.666667 NA intron (NM_000504, intron 6 of 7) AluSx1|SINE|Alu -13392 NM_003891 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 209.667-4 chr10 54563601 54564180 + 0.666667 NA intron (NM_001142771, intron 2 of 34) intron (NM_001142771, intron 2 of 34) 44067 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 233-23 chr5 74551721 74552469 + 0.666667 NA Intergenic Intergenic -15119 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 212-2 chr1 108581756 108582331 + 0.666667 NA intron (NM_001010883, intron 1 of 10) Tigger1|DNA|TcMar-Tigger 21943 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 195.667-41 chr8 11336373 11336717 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -3092 NR_001578 157739 Hs.583896 NR_001578 ENSG00000154316 TDH SDR14E1P L-threonine dehydrogenase (pseudogene) pseudo 203.5-47 chrUn_KI270438v1 105627 106188 + 0.666667 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 270.667-21 chr7 45285674 45286308 + 0.666667 NA Intergenic LTR37-int|LTR|ERV1 128200 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 177.667-28 chr3 1070918 1071247 + 0.666667 NA Intergenic Intergenic -21942 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 177-34 chr5 154531170 154531526 + 0.666667 NA Intergenic LTR33|LTR|ERVL -53121 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 190-49 chr7 143321024 143321367 + 0.666667 NA intron (NR_046453, intron 3 of 21) intron (NR_046453, intron 3 of 21) 5084 NR_046453 1180 Hs.121483 NM_000083 ENSG00000188037 CLCN1 CLC1 chloride voltage-gated channel 1 protein-coding 215.667-7 chr11 31160094 31160643 + 0.666667 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) -167682 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 204.167-3 chr10 129424836 129425230 + 0.666667 NA Intergenic Intergenic -42208 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 164.833-2 chr1 210433982 210434561 + 0.666667 NA intron (NM_001122834, intron 7 of 11) intron (NM_001122834, intron 7 of 11) 104905 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 169.833-18 chr16 76071398 76071652 + 0.666667 NA Intergenic L1ME1|LINE|L1 -205876 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 171.667-7 chr1 228734800 228735094 + 0.666667 NA promoter-TSS (NM_021205) promoter-TSS (NM_021205) -532 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 204.333-48 chr9 99816545 99816967 + 0.666667 NA intron (NR_109802, intron 1 of 6) AluSx1|SINE|Alu 3133 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 210.667-45 chr7 23938785 23939139 + 0.666667 NA Intergenic L1MA5A|LINE|L1 228743 NM_032944 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 229.667-44 chr8 87218223 87218635 + 0.666667 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 352014 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 163.333-46 chr5 13828239 13828663 + 0.666667 NA intron (NM_001369, intron 38 of 78) MLT1E1A|LTR|ERVL-MaLR 116029 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 254.334-3 chr16 9835727 9836310 + 0.666667 NA intron (NM_001134408, intron 7 of 13) intron (NM_001134408, intron 7 of 13) 346049 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 251.667-31 chr6 69645965 69646454 + 0.666667 NA Intergenic Intergenic 150257 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 185.667-33 chr3 183072364 183072705 + 0.666667 NA intron (NR_120639, intron 2 of 15) intron (NR_120639, intron 2 of 15) 26709 NR_120640 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 213.833-10 chr17 57130689 57131108 + 0.666667 NA Intergenic Intergenic 35409 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 164.5-28 chr2 101906654 101906954 + 0.666667 NA Intergenic THE1C-int|LTR|ERVL-MaLR -76661 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 225.833-14 chr2 120507790 120508186 + 0.666667 NA Intergenic Intergenic -41639 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 168.667-36 chr4 86051620 86051992 + 0.666667 NA intron (NM_001363657, intron 11 of 13) intron (NM_001363657, intron 11 of 13) -68000 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 190.833-5 chr11 106424258 106424619 + 0.666667 NA Intergenic Intergenic 173031 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 199.833-29 chr8 77731281 77731691 + 0.666667 NA Intergenic Intergenic 280789 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 227.667-29 chr22 43732727 43733159 + 0.666667 NA intron (NM_198856, intron 5 of 29) intron (NM_198856, intron 5 of 29) 79362 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 166.167-25 chr3 77518272 77518617 + 0.666667 NA intron (NM_001290039, intron 5 of 26) intron (NM_001290039, intron 5 of 26) 420432 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 198-31 chr4 36386079 36386558 + 0.666667 NA Intergenic Intergenic 40110 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 195.333-7 chr10 102755324 102755787 + 0.666667 NA intron (NM_001083913, intron 1 of 3) AluSz|SINE|Alu 11607 NM_001083913 54838 Hs.500897 NM_017787 ENSG00000166272 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1 like protein-coding 166.667-12 chr12 47869730 47870046 + 0.666667 NA intron (NM_001017535, intron 4 of 10) AluJb|SINE|Alu 35106 NM_000376 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 186.833-2 chr1 67149025 67149363 + 0.666667 NA Intergenic Intergenic -14224 NM_001276351 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 166-39 chr19 30652002 30652375 + 0.666667 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 279804 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 220.5-13 chr15 60636582 60636941 + 0.666667 NA intron (NM_134261, intron 2 of 10) L1ME4a|LINE|L1 -9231 NM_134260 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 231.833-7 chr2 9847608 9848124 + 0.666667 NA intron (NM_001318976, intron 3 of 14) intron (NM_001318976, intron 3 of 14) 4392 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 226.833-19 chr8 117610112 117610662 + 0.666667 NA Intergenic AluSz|SINE|Alu 89674 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 175.333-20 chr16 6160754 6161053 + 0.666667 NA intron (NM_018723, intron 1 of 15) L2a|LINE|L2 141200 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 170.667-42 chr6 64991026 64991497 + 0.666667 NA intron (NM_001292009, intron 14 of 43) intron (NM_001292009, intron 14 of 43) -310157 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 232.667-16 chr18 6149293 6149914 + 0.666667 NA intron (NM_001365769, intron 13 of 16) L1PA4|LINE|L1 -107141 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 192-36 chr6 73026951 73027382 + 0.666667 NA intron (NM_001160132, intron 2 of 13) intron (NM_001160132, intron 2 of 13) -59413 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 223.167-10 chr2 85740325 85740696 + 0.666667 NA Intergenic L1MC5|LINE|L1 -13481 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding 213.333-18 chr20 48927432 48928001 + 0.666667 NA intron (NM_006420, intron 1 of 38) AluSz6|SINE|Alu 6005 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 181.167-26 chr5 140487769 140488326 + 0.666667 NA intron (NM_020690, intron 14 of 35) intron (NM_020690, intron 14 of 35) -59615 NM_003732 8637 Hs.594084 NM_003732 ENSG00000243056 EIF4EBP3 4E-BP3|4EBP3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding 217.667-16 chr12 122389982 122390311 + 0.666667 NA intron (NM_198240, intron 1 of 23) MSTB|LTR|ERVL-MaLR -5396 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 187-16 chr2 26034550 26034981 + 0.666667 NA intron (NM_016131, intron 1 of 5) intron (NM_016131, intron 1 of 5) 681 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 215.333-7 chr1 210251615 210252078 + 0.666667 NA Intergenic G-rich|Low_complexity|Low_complexity -17961 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 198.833 chr1 23932338 23932788 + 0.666667 NA Intergenic L1M4|LINE|L1 3493 NR_039615 100616492 NR_039615 ENSG00000264926 MIR378F mir-378f microRNA 378f ncRNA 276.167-21 chr7 20328865 20329837 + 0.666667 NA intron (NR_110120, intron 2 of 2) intron (NR_110120, intron 2 of 2) -1549 NM_002214 3696 Hs.592171 NM_002214 ENSG00000105855 ITGB8 - integrin subunit beta 8 protein-coding 280.167-17 chr9 70449360 70450199 + 0.666667 NA Intergenic Intergenic -35122 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 196-23 chr2 123055256 123055734 + 0.666667 NA Intergenic L1M4c|LINE|L1 17986 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 206.333-26 chr22 47203416 47203969 + 0.666667 NA Intergenic Intergenic -141879 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 171-14 chr12 49587180 49587462 + 0.666667 NA TTS (NM_032130) TTS (NM_032130) 18318 NM_032130 84070 Hs.524406 NM_032130 ENSG00000135436 FAM186B C12orf25 family with sequence similarity 186 member B protein-coding 200-40 chr7 102279058 102279581 + 0.666667 NA intron (NM_001913, intron 18 of 22) AluSz|SINE|Alu -5822 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 258.667-14 chr2 81412245 81412700 + 0.666667 NA Intergenic Intergenic 54474 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 185.5-17 chr15 69197884 69198239 + 0.666667 NA intron (NM_001324094, intron 2 of 5) intron (NM_001324094, intron 2 of 5) 37426 NM_001324093 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 189.167-34 chr8 8620348 8621014 + 0.666667 NA Intergenic AluSz6|SINE|Alu -81256 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 279.667-15 chr21 31872556 31873065 + 0.666667 NA promoter-TSS (NM_014586) promoter-TSS (NM_014586) -210 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 197.667-6 chr10 31553827 31554220 + 0.666667 NA Intergenic L1M5|LINE|L1 -154268 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 175.5-29 chr2 57340212 57340832 + 0.666667 NA Intergenic L1PA13|LINE|L1 -567129 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 194.666-4 chr15 52726062 52726631 + 0.666667 NA Intergenic L1MEd|LINE|L1 -47712 NM_019600 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 180-48 chr4 73016756 73017154 + 0.666667 NA Intergenic Intergenic 52761 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 166-37 chr18 12729013 12729396 + 0.666667 NA Intergenic L1PB2|LINE|L1 20218 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 183.333-26 chr14 92729646 92730110 + 0.666667 NA intron (NM_001363699, intron 3 of 12) intron (NM_001363699, intron 3 of 12) 18749 NM_005606 5641 Hs.18069 NM_005606 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 171-7 chr1 180055962 180056378 + 0.666667 NA intron (NM_014810, intron 25 of 37) L1MEg|LINE|L1 -98663 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 183.667-25 chr19 3805740 3806145 + 0.666667 NA 3' UTR (NM_015174, exon 19 of 19) 3' UTR (NM_015174, exon 19 of 19) -4143 NM_002378 4145 Hs.631845 NM_002378 ENSG00000007264 MATK CHK|CTK|HHYLTK|HYL|HYLTK|Lsk megakaryocyte-associated tyrosine kinase protein-coding 169.167-25 chr4 64364375 64364736 + 0.666667 NA intron (NM_001363796, intron 2 of 11) L1PA15|LINE|L1 44895 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 180-37 chr2 105006444 105006867 + 0.666667 NA intron (NR_110603, intron 1 of 2) intron (NR_110603, intron 1 of 2) -31414 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 209.667-34 chr4 123172890 123173493 + 0.666667 NA intron (NM_001345856, intron 14 of 15) L1M5|LINE|L1 -223604 NM_199327 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 178.833-6 chr11 30165828 30166136 + 0.666667 NA Intergenic Intergenic -65032 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 173.333-32 chr8 31069652 31070110 + 0.666667 NA intron (NM_000553, intron 7 of 34) intron (NM_000553, intron 7 of 34) -36525 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 198.667 chr1 107017949 107018458 + 0.666667 NA Intergenic Intergenic -38471 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 184.167 chr1 227542270 227542802 + 0.666667 NA Intergenic CpG -21020 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 168.167-25 chr4 33028628 33028940 + 0.666667 NA Intergenic Intergenic 677746 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 179-30 chr5 93908625 93909095 + 0.666667 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -167260 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 206.333-29 chr5 116475293 116475680 + 0.666667 NA intron (NM_001300780, intron 16 of 19) intron (NM_001300780, intron 16 of 19) 27988 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 260.833-2 chr1 109263188 109263814 + 0.666667 NA intron (NM_001408, intron 8 of 33) intron (NM_001408, intron 8 of 33) 13962 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 186.667-58 chr7 108022079 108022427 + 0.666667 NA Intergenic MLT1N2|LTR|ERVL-MaLR -19092 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 209.667-27 chr3 108028683 108029033 + 0.666667 NA Intergenic Intergenic 62230 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 193.5-39 chr5 51824654 51825173 + 0.666667 NA Intergenic Intergenic -183118 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 188.667-50 chr8 68851626 68852035 + 0.666667 NA Intergenic MLT1B|LTR|ERVL-MaLR 252360 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 167.333-42 chr4 105666904 105667351 + 0.666667 NA intron (NM_001242729, intron 11 of 13) intron (NM_001242729, intron 11 of 13) 41562 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 192.5-18 chr19 7929009 7929493 + 0.666667 NA intron (NM_006351, intron 10 of 12) intron (NM_006351, intron 10 of 12) -3116 NM_206833 404217 Hs.657978 NM_206833 ENSG00000178531 CTXN1 CTXN cortexin 1 protein-coding 167.833-34 chr4 10015333 10015774 + 0.666667 NA intron (NM_001001290, intron 3 of 12) MLT1A|LTR|ERVL-MaLR 5944 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 233.333-34 chr8 86085779 86086229 + 0.666667 NA Intergenic L1PA16|LINE|L1 -12906 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 241.667-10 chr14 87800861 87801387 + 0.666667 NA Intergenic Intergenic -145830 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 167-20 chr2 197672557 197672925 + 0.666667 NA intron (NM_144629, intron 1 of 8) MIR|SINE|MIR 2846 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 193.333-36 chr2 170816557 170817059 + 0.666667 NA promoter-TSS (NM_000817) promoter-TSS (NM_000817) -79 NM_000817 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 178.333-15 chr15 76043481 76043833 + 0.666667 NA Intergenic L1MA3|LINE|L1 -16328 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 225.833-7 chr11 74867689 74868358 + 0.666667 NA intron (NM_001270381, intron 8 of 15) AluSz6|SINE|Alu 81068 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 265.5-18 chr3 61669431 61669874 + 0.666667 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 108081 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 244-37 chr8 3584785 3585654 + 0.666667 NA intron (NM_033225, intron 9 of 69) intron (NM_033225, intron 9 of 69) -856768 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 240.5-21 chr6 108525389 108525780 + 0.666667 NA non-coding (NR_136553, exon 9 of 9) non-coding (NR_136553, exon 9 of 9) -34241 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 164.667-56 chrX 155170182 155170577 + 0.666667 NA Intergenic L1MD|LINE|L1 -26628 NM_001303544 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 177.333-41 chr9 27274829 27275207 + 0.666667 NA intron (NR_026679, intron 7 of 16) intron (NR_026679, intron 7 of 16) 7775 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 182.667-35 chr3 160435852 160436266 + 0.666667 NA 3' UTR (NM_173084, exon 3 of 3) 3' UTR (NM_173084, exon 3 of 3) 13727 NM_173084 286827 Hs.212957 NM_173084 ENSG00000213186 TRIM59 IFT80L|MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 178.5-24 chr2 210236662 210237089 + 0.666667 NA Intergenic MER4B-int|LTR|ERV1 -11428 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 184-9 chr10 53980004 53980357 + 0.666667 NA intron (NM_001354411, intron 22 of 34) AluSx1|SINE|Alu -506050 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 174.333-4 chr10 5164610 5165096 + 0.666667 NA intron (NR_027916, intron 1 of 7) LTR25-int|LTR|ERV1 20334 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 167.5-22 chr2 110106965 110107243 + 0.666667 NA intron (NM_005434, intron 1 of 3) L1MD2|LINE|L1 9462 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 195.5-40 chrX 138980032 138980403 + 0.666667 NA intron (NM_001139500, intron 2 of 6) intron (NM_001139500, intron 2 of 6) -112662 NM_001139502 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 176.667-29 chr2 212899199 212899652 + 0.666667 NA Intergenic LTR33C|LTR|ERVL -26832 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 174.333-38 chr7 11190584 11190911 + 0.666667 NA Intergenic L4_B_Mam|LINE|RTE-X 216875 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 180.667-13 chr11 118853818 118854211 + 0.666667 NA Intergenic MIRb|SINE|MIR -29878 NM_001716 643 Hs.113916 NM_001716 ENSG00000160683 CXCR5 BLR1|CD185|MDR15 C-X-C motif chemokine receptor 5 protein-coding 227.833-3 chr10 49368857 49369198 + 0.666667 NA intron (NM_001276451, intron 6 of 6) intron (NM_001276451, intron 6 of 6) 27062 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 189.667-18 chr14 80587196 80587971 + 0.666667 NA intron (NM_152446, intron 19 of 24) LFSINE_Vert|SINE|tRNA 354155 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 166.667-49 chr7 120857731 120858043 + 0.666667 NA 5' UTR (NM_012338, exon 1 of 8) 5' UTR (NM_012338, exon 1 of 8) 257 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 218.667-27 chr4 54060698 54061109 + 0.666667 NA intron (NM_012110, intron 1 of 5) intron (NM_012110, intron 1 of 5) 3702 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 281.667-27 chr9 32382297 32382981 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR -1964 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 288-7 chr12 92146134 92146654 + 0.666667 NA promoter-TSS (NM_001731) promoter-TSS (NM_001731) 309 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 254 chr1 78812343 78812772 + 0.666667 NA Intergenic LTR50|LTR|ERVL 162726 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 165-29 chr2 76663168 76663590 + 0.666667 NA Intergenic Intergenic -322586 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 177.5-35 chr22 44237448 44237855 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 56726 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 278.667-12 chr15 69594333 69594923 + 0.666667 NA intron (NR_126438, intron 1 of 3) intron (NR_126438, intron 1 of 3) 2428 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 230-17 chr14 55140696 55141224 + 0.666667 NA intron (NR_003225, intron 2 of 3) intron (NR_003225, intron 2 of 3) 3977 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 234.667-19 chr22 45683047 45683493 + 0.666667 NA intron (NM_001167621, intron 1 of 10) AluSx|SINE|Alu 11436 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 188.167-24 chr3 133525501 133525987 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -34598 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 171.667-46 chr4 111678364 111678726 + 0.666667 NA Intergenic Intergenic -466909 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 173.667-29 chr2 44919514 44919997 + 0.666667 NA Intergenic Intergenic 19133 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 196.667-17 chr15 90352225 90352614 + 0.666667 NA intron (NM_001004309, intron 1 of 3) CpG 135 NM_001004309 342132 Hs.55307 NM_001004309 ENSG00000196391 ZNF774 - zinc finger protein 774 protein-coding 199.833-6 chr10 89261099 89261478 + 0.666667 NA Intergenic Intergenic -9249 NM_001288979 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 203.833-7 chr14 77616765 77617256 + 0.666667 NA promoter-TSS (NM_004863) promoter-TSS (NM_004863) -243 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 207.333-44 chr6 83638743 83639289 + 0.666667 NA intron (NM_001242792, intron 8 of 28) intron (NM_001242792, intron 8 of 28) 69543 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 265.667-8 chr12 8640682 8641325 + 0.666667 NA Intergenic Intergenic 21823 NR_123733 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 254.167-11 chr13 113528010 113528484 + 0.666667 NA intron (NR_146222, intron 8 of 11) L1MDa|LINE|L1 37226 NM_001349743 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 180.333-37 chr22 40177528 40177922 + 0.666667 NA promoter-TSS (NM_001162501) promoter-TSS (NM_001162501) -200 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 228.333-16 chr18 41106011 41106466 + 0.666667 NA Intergenic L1M4|LINE|L1 414439 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 167.5-14 chr14 66394213 66394657 + 0.666667 NA Intergenic L1ME3G|LINE|L1 -91936 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 243.5-10 chr17 75201062 75201668 + 0.666667 NA Intergenic AluSx|SINE|Alu -4071 NM_001330472 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 216.333-22 chr18 8452482 8452920 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -85667 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 219.833-23 chr6 140845593 140845978 + 0.666667 NA Intergenic Intergenic 161971 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 196.5-2 chr1 160642655 160643018 + 0.666667 NA intron (NM_001330754, intron 1 of 7) intron (NM_001330754, intron 1 of 7) 4208 NR_104399 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 200.667-27 chr2 170375033 170375429 + 0.666667 NA intron (NM_001083615, intron 9 of 33) intron (NM_001083615, intron 9 of 33) -24288 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 191.167-26 chr7 48873546 48874060 + 0.666667 NA Intergenic Intergenic -50744 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 258.5-5 chr11 35911311 35911848 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie -32402 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 172-35 chr3 136367424 136368009 + 0.666667 NA intron (NM_005862, intron 24 of 33) intron (NM_005862, intron 24 of 33) 117376 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 177-45 chr8 118426066 118426547 + 0.666667 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -194695 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 181.333-44 chr9 33284361 33284782 + 0.666667 NA Intergenic Intergenic -5945 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 177.833-35 chr7 124862070 124862351 + 0.666667 NA intron (NM_001042594, intron 7 of 17) L3|LINE|CR1 67615 NM_015450 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 175.167-43 chr7 106775566 106775971 + 0.666667 NA Intergenic Intergenic -89514 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 172-38 chr4 110895630 110896030 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -35183 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 402.334-2 chr14 52821795 52823322 + 0.666667 NA Intergenic Intergenic -30951 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 199-32 chr3 194206478 194206967 + 0.666667 NA promoter-TSS (NR_125404) promoter-TSS (NR_125404) -415 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA 167.333-33 chr22 34998486 34998829 + 0.666667 NA promoter-TSS (NR_138042) promoter-TSS (NR_138042) -741 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 170.667-52 chr8 103314805 103315213 + 0.666667 NA intron (NM_001317796, intron 2 of 5) HAL1ME|LINE|L1 6031 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 208.333-27 chr4 17278890 17279418 + 0.666667 NA Intergenic Intergenic 41728 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 218.167-20 chr4 56837485 56837851 + 0.666667 NA Intergenic AluSx1|SINE|Alu -15799 NM_021114 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 174.667-61 chrX 41003834 41004294 + 0.666667 NA Intergenic Intergenic -81381 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 190-30 chr2 64749645 64750099 + 0.666667 NA Intergenic Intergenic -95959 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 183.667-18 chr15 79593241 79593569 + 0.666667 NA Intergenic L1M6|LINE|L1 160889 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 212.333-11 chr14 87174562 87175060 + 0.666667 NA Intergenic LTR33B|LTR|ERVL 269033 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 210-11 chr12 73629906 73630326 + 0.666667 NA Intergenic Intergenic 470926 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 231.833-17 chr7 35305119 35305545 + 0.666667 NA Intergenic Intergenic -8523 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 187.833-29 chr7 44188607 44189118 + 0.666667 NA intron (NM_001354800, intron 1 of 10) intron (NM_001354800, intron 1 of 10) 577 NM_000162 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 221-10 chr14 38581321 38581771 + 0.666667 NA Intergenic (ATTTCAT)n|Simple_repeat|Simple_repeat -301050 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 186.667-6 chr1 111259011 111259451 + 0.666667 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -21293 NR_003928 149620 Hs.736960 NM_001013621 ENSG00000203878 CHIAP2 - chitinase, acidic pseudogene 2 pseudo 182.5-42 chr9 34861441 34861928 + 0.666667 NA Intergenic L1MC4|LINE|L1 -23098 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 232.667-25 chr3 30811925 30812332 + 0.666667 NA intron (NM_207359, intron 11 of 14) intron (NM_207359, intron 11 of 14) 82533 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 171.5-7 chr10 124907212 124907524 + 0.666667 NA Intergenic Intergenic -34755 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 219.333-31 chr4 159223270 159223765 + 0.666667 NA intron (NM_001351724, intron 4 of 30) intron (NM_001351724, intron 4 of 30) -4115 NM_001351726 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 198-26 chr21 26985237 26985602 + 0.666667 NA Intergenic L2|LINE|L2 -18331 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 163.667-40 chr4 32625021 32625418 + 0.666667 NA Intergenic LTR52|LTR|ERVL 274181 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 236.5-33 chr8 18213680 18214198 + 0.666667 NA intron (NM_001160170, intron 3 of 4) AluYk3|SINE|Alu 3830 NM_001160172 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 176.667-7 chr11 35276117 35276634 + 0.666667 NA intron (NM_001252652, intron 10 of 11) intron (NM_001252652, intron 10 of 11) 113425 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 229.333-26 chr3 171371104 171371583 + 0.666667 NA intron (NM_001161563, intron 1 of 31) intron (NM_001161563, intron 1 of 31) 89062 NM_001161563 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 221.667-12 chr12 102092590 102093119 + 0.666667 NA intron (NM_024057, intron 5 of 9) intron (NM_024057, intron 5 of 9) 27260 NM_024057 79023 Hs.444276 NM_024057 ENSG00000075188 NUP37 MCPH24|p37 nucleoporin 37 protein-coding 209.333-34 chr5 147235717 147236212 + 0.666667 NA intron (NM_001112724, intron 1 of 12) intron (NM_001112724, intron 1 of 12) 938 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 172.333-19 chr14 32255112 32255518 + 0.666667 NA Intergenic Intergenic -52046 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 212.333-4 chr10 24395376 24395839 + 0.666667 NA intron (NM_019590, intron 3 of 20) intron (NM_019590, intron 3 of 20) -53807 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 190.833-6 chr12 2233545 2234089 + 0.666667 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -10336 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 226.333-3 chr14 34677836 34678297 + 0.666667 NA Intergenic Intergenic 35751 NM_021914 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 175.667-9 chr10 96000876 96001261 + 0.666667 NA intron (NM_001159747, intron 2 of 11) intron (NM_001159747, intron 2 of 11) 977 NM_001159747 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 226.667-9 chr11 87473905 87474416 + 0.666667 NA Intergenic Intergenic 245251 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 220-4 chr11 62185441 62185873 + 0.666667 NA Intergenic LTR14C|LTR|ERVK -4559 NM_006552 10648 Hs.202686 NM_006552 ENSG00000168515 SCGB1D1 LIPA|LPHA|LPNA secretoglobin family 1D member 1 protein-coding 197.167-26 chr22 23257367 23257844 + 0.666667 NA intron (NM_004327, intron 2 of 22) intron (NM_004327, intron 2 of 22) -5162 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 172.667-49 chr5 128537889 128538196 + 0.666667 NA 5' UTR (NM_001999, exon 1 of 65) 5' UTR (NM_001999, exon 1 of 65) 203 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 268-14 chr13 89461757 89462187 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL 38537 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 178.667-14 chr16 9008530 9009030 + 0.666667 NA Intergenic Intergenic -44874 NM_003470 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 167.667-29 chr3 25939931 25940502 + 0.666667 NA Intergenic LTR16|LTR|ERVL -66521 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 212-21 chr16 70774037 70774542 + 0.666667 NA intron (NM_001351157, intron 8 of 17) L1MC4a|LINE|L1 19194 NR_034083 100130894 Hs.678899 NR_034083 ENSG00000214353 VAC14-AS1 - VAC14 antisense RNA 1 ncRNA 185.167-28 chr8 57575378 57575908 + 0.666667 NA Intergenic Intergenic -170506 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 170.667-23 chr2 182809998 182810515 + 0.666667 NA Intergenic Intergenic 56381 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 192.5-35 chr4 58013854 58014455 + 0.666667 NA Intergenic Intergenic 522174 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 176.167-24 chr2 101386158 101386573 + 0.666667 NA intron (NM_153836, intron 1 of 3) intron (NM_153836, intron 1 of 3) 1138 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 226-6 chr1 211581089 211581582 + 0.666667 NA Intergenic Intergenic -2174 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 178.333-17 chr17 66303786 66304164 + 0.666667 NA intron (NM_002737, intron 1 of 16) AluSx|SINE|Alu 1362 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 182-30 chr22 49066696 49067091 + 0.666667 NA Intergenic Intergenic 200123 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 190.5-4 chr1 184051684 184052524 + 0.666667 NA intron (NR_125335, intron 1 of 5) intron (NR_125335, intron 1 of 5) 374 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 242.667-6 chr11 84289252 84289634 + 0.666667 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -16163 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 319-13 chr5 30582559 30583284 + 0.666667 NA Intergenic Intergenic -610765 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 204.667-41 chr8 124261302 124261732 + 0.666667 NA Intergenic Intergenic -14119 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 185-9 chr10 33588834 33589288 + 0.666667 NA Intergenic L1ME1|LINE|L1 183619 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 183.833-8 chr12 40105872 40106152 + 0.666667 NA promoter-TSS (NM_052885) promoter-TSS (NM_052885) 69 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 204-19 chr18 72729078 72729500 + 0.666667 NA Intergenic Intergenic 124093 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 263.667-25 chr9 4077229 4077653 + 0.666667 NA intron (NM_001042413, intron 4 of 10) L3|LINE|CR1 74742 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 190.833-17 chr20 33846972 33847369 + 0.666667 NA intron (NM_176812, intron 1 of 4) MER34C2|LTR|ERV1 35822 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 220.5-26 chr2 228699361 228699998 + 0.666667 NA Intergenic Intergenic -88284 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 202.333-2 chr1 45910678 45911095 + 0.666667 NA intron (NM_001324320, intron 4 of 29) Zaphod|DNA|hAT-Tip100 46538 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 183.667-47 chr5 174355293 174355716 + 0.666667 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 19150 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 163.167-14 chr17 39646415 39646701 + 0.666667 NA intron (NM_001165938, intron 1 of 13) MIRc|SINE|MIR 9414 NM_006804 10948 Hs.728838 NM_006804 ENSG00000131748 STARD3 CAB1|MLN64|es64 StAR related lipid transfer domain containing 3 protein-coding 261.5-13 chr13 98839875 98840334 + 0.666667 NA intron (NM_001366682, intron 38 of 53) intron (NM_001366682, intron 38 of 53) 8020 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 215.333-10 chr11 25790388 25790842 + 0.666667 NA Intergenic Intergenic -398508 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 189.333-9 chr12 45689941 45690458 + 0.666667 NA Intergenic MER21-int|LTR|ERVL 37722 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 172.667-9 chr10 102284121 102284603 + 0.666667 NA intron (NM_001199378, intron 3 of 39) L1MB5|LINE|L1 38830 NM_001199378 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 191.333-8 chr11 77656177 77656646 + 0.666667 NA Intergenic MER51A|LTR|ERV1 -18605 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 167.5-17 chr17 55359630 55359961 + 0.666667 NA Intergenic HSMAR2|DNA|TcMar-Mariner 62040 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 185.333-58 chr9 37811240 37811752 + 0.666667 NA intron (NM_024345, intron 1 of 6) L1MEg|LINE|L1 10699 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 165.333-17 chr14 23684509 23685003 + 0.666667 NA Intergenic L2a|LINE|L2 48392 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 236.333-25 chr4 176172523 176173115 + 0.666667 NA intron (NM_170710, intron 26 of 30) MSTB|LTR|ERVL-MaLR 22766 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 245.833-9 chr12 120838061 120838442 + 0.666667 NA intron (NM_139015, intron 1 of 10) intron (NM_139015, intron 1 of 10) 66107 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 240.333-4 chr12 127977827 127978390 + 0.666667 NA intron (NR_126452, intron 2 of 3) MIR3|SINE|MIR 5783 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 176.667-28 chr2 193843123 193843472 + 0.666667 NA Intergenic Intergenic -500972 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 208-29 chr3 34005872 34006406 + 0.666667 NA Intergenic Intergenic 207509 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 169.5-25 chr20 4010584 4011045 + 0.666667 NA intron (NM_001134338, intron 1 of 6) intron (NM_001134338, intron 1 of 6) 4744 NM_001321749 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 171.333-32 chr22 22373035 22373530 + 0.666667 NA Intergenic Intergenic 75184 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 225.167-20 chr3 85303200 85303865 + 0.666667 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -82178 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 213.667-14 chr16 31668606 31669063 + 0.666667 NA Intergenic L1P4e|LINE|L1 -31779 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 204-21 chr20 40681414 40681810 + 0.666667 NA Intergenic Intergenic 7624 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 185-29 chr2 28427373 28427777 + 0.666667 NA Intergenic L1MB5|LINE|L1 -32903 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 209.333-14 chr11 112789675 112789990 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -171588 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 250.333-5 chr1 162633885 162634346 + 0.666667 NA intron (NM_006182, intron 1 of 17) intron (NM_006182, intron 1 of 17) 1651 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 211.833-17 chr5 68963793 68964241 + 0.666667 NA Intergenic L1ME4b|LINE|L1 65910 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 227.667-32 chr3 64342851 64343460 + 0.666667 NA Intergenic Intergenic -74982 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 174.334-9 chr3 82616049 82616644 + 0.666667 NA Intergenic MIRb|SINE|MIR 630204 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 216-19 chr15 90400110 90400593 + 0.666667 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 12109 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 190.333-13 chr13 94239394 94239749 + 0.666667 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -51580 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 169-4 chr1 195946241 195946673 + 0.666667 NA Intergenic L2a|LINE|L2 142258 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 187.5-44 chr9 10147937 10148415 + 0.666667 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 348784 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 176.667-17 chr15 69203082 69203557 + 0.666667 NA intron (NM_001324094, intron 2 of 5) intron (NM_001324094, intron 2 of 5) 42684 NM_001324093 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 174.667-5 chr1 206760600 206760922 + 0.666667 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? -10012 NM_153758 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 194.667-38 chr22 35369780 35370090 + 0.666667 NA Intergenic MER50-int|LTR|ERV1 -11161 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 183.667-4 chr1 219171276 219171778 + 0.666667 NA intron (NR_038845, intron 1 of 4) intron (NR_038845, intron 1 of 4) 2261 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 263.333-18 chr4 124941545 124941983 + 0.666667 NA Intergenic HAL1|LINE|L1 -229032 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 226.5-16 chr15 75394041 75394718 + 0.666667 NA intron (NM_015477, intron 14 of 20) intron (NM_015477, intron 14 of 20) -25752 NM_001256494 4123 Hs.26232 NM_006715 ENSG00000140400 MAN2C1 MAN6A8|MANA|MANA1 mannosidase alpha class 2C member 1 protein-coding 174.333-16 chr19 8423727 8424090 + 0.666667 NA intron (NR_163145, intron 2 of 3) AluJo|SINE|Alu 5556 NM_001369779 51257 Hs.631861 NM_016496 ENSG00000099785 MARCH2 HSPC240|MARCH-II|RNF172 membrane associated ring-CH-type finger 2 protein-coding 212.5-28 chr4 114806494 114806956 + 0.666667 NA Intergenic L1PA17|LINE|L1 149966 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 188-26 chr2 85264748 85265184 + 0.666667 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 51314 NR_136323 102724579 Hs.669216 NR_136323 LOC102724579 - uncharacterized LOC102724579 ncRNA 204.333-31 chr3 186444050 186444429 + 0.666667 NA intron (NR_151710, intron 3 of 3) Charlie1a|DNA|hAT-Charlie 3894 NR_151710 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 282.667-25 chr5 170307132 170307671 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 5315 NR_147701 100128059 Hs.587351 NR_147701 ENSG00000250274 LOC100128059 - uncharacterized LOC100128059 ncRNA 169.5-47 chr8 91234091 91234587 + 0.666667 NA intron (NM_001282357, intron 2 of 18) intron (NM_001282357, intron 2 of 18) -14980 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 166.5-13 chr12 129582480 129582729 + 0.666667 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 321421 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 194.5-34 chr3 97879362 97879787 + 0.666667 NA intron (NM_153605, intron 4 of 21) L2c|LINE|L2 57563 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 178-41 chr7 34671234 34671615 + 0.666667 NA intron (NM_207172, intron 1 of 8) intron (NM_207172, intron 1 of 8) 13185 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 176.833-30 chr5 4770548 4770946 + 0.666667 NA Intergenic Intergenic -2734 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 215.667-18 chr17 29221521 29221977 + 0.666667 NA Intergenic AluSq2|SINE|Alu -25108 NM_005208 1411 Hs.46275 NM_005208 ENSG00000108255 CRYBA1 CRYB1|CTRCT10 crystallin beta A1 protein-coding 255-28 chr5 43752127 43752575 + 0.666667 NA Intergenic Intergenic -149121 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 220.5-9 chr12 46553969 46554370 + 0.666667 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 170062 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 171.667-8 chr10 104809369 104809689 + 0.666667 NA intron (NM_014978, intron 1 of 26) MLT1H|LTR|ERVL-MaLR -143313 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 244.667-34 chr7 95247014 95247811 + 0.666667 NA intron (NM_017650, intron 7 of 15) intron (NM_017650, intron 7 of 15) 77120 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 170.333-15 chr14 46130297 46130742 + 0.666667 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 66360 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 166-54 chr4 145505985 145506445 + 0.666667 NA intron (NM_001354817, intron 1 of 6) intron (NM_001354817, intron 1 of 6) -3235 NR_108077 101927659 Hs.519005 NR_108077 ENSG00000250582 SMAD1-AS2 - SMAD1 antisense RNA 2 ncRNA 223.667-35 chr21 35616310 35616746 + 0.666667 NA Intergenic Intergenic -35764 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 181-14 chr15 88596567 88596870 + 0.666667 NA intron (NR_120370, intron 2 of 2) L1ME3Cz|LINE|L1 7885 NR_120369 101929743 Hs.558810 NR_120369 ENSG00000249487 LINC01586 - long intergenic non-protein coding RNA 1586 ncRNA 178.667-39 chr6 155915118 155915532 + 0.666667 NA Intergenic Intergenic -31472 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 172.333-18 chr13 86868090 86868465 + 0.666667 NA Intergenic Intergenic -43643 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 225-30 chr5 85939506 85939991 + 0.666667 NA Intergenic Intergenic -342696 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 184-43 chr6 8888308 8888667 + 0.666667 NA Intergenic MLT1C|LTR|ERVL-MaLR 236278 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 220.5-42 chr9 31079252 31079951 + 0.666667 NA Intergenic Intergenic 301889 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 314.667-3 chr11 95068080 95068691 + 0.666667 NA 3' UTR (NM_032102, exon 1 of 1) 3' UTR (NM_032102, exon 1 of 1) 1508 NM_032102 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 232.833-27 chr6 71810095 71810444 + 0.666667 NA Intergenic L1PA4|LINE|L1 -76434 NM_001350411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 169.667-10 chr10 54886287 54886646 + 0.666667 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -85175 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 175.667-51 chr7 93898050 93898493 + 0.666667 NA Intergenic L2a|LINE|L2 7377 NR_134235 105375401 Hs.438231 NR_134235 ENSG00000234695 LOC105375401 - uncharacterized LOC105375401 ncRNA 169-12 chr12 9131390 9131768 + 0.666667 NA Intergenic L2a|LINE|L2 -15350 NM_000014 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 213.667-6 chr13 52652808 52653340 + 0.666667 NA exon (NM_006704, exon 2 of 13) exon (NM_006704, exon 2 of 13) 238 NM_001130912 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 195.5-9 chr14 68147192 68147581 + 0.666667 NA intron (NM_133509, intron 7 of 10) L4_C_Mam|LINE|RTE-X 323794 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 178.167-20 chr4 45178542 45179150 + 0.666667 NA Intergenic FLAM_A|SINE|Alu -452212 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 191.667-16 chr16 13591049 13591446 + 0.666667 NA Intergenic MER21C|LTR|ERVL -328910 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 190-13 chr11 133489394 133489733 + 0.666667 NA intron (NM_001012393, intron 1 of 7) L1PB4|LINE|L1 42938 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 243.167 chr1 48809521 48809976 + 0.666667 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -32779 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 280.833-3 chr11 94526557 94527157 + 0.666667 NA intron (NM_001190462, intron 2 of 3) intron (NM_001190462, intron 2 of 3) 14396 NM_001190462 643037 NM_001190462 ENSG00000257057 C11orf97 LINC01171 chromosome 11 open reading frame 97 protein-coding 199.333-49 chr9 73831393 73832020 + 0.666667 NA Intergenic Intergenic -539825 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 184.333-43 chr8 96764542 96764916 + 0.666667 NA intron (NM_016134, intron 1 of 7) intron (NM_016134, intron 1 of 7) 119487 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 198.666 chr1 236709651 236710232 + 0.666667 NA intron (NM_001278344, intron 1 of 22) intron (NM_001278344, intron 1 of 22) 23442 NM_001278343 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 186-8 chr12 66647146 66647456 + 0.666667 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) 31775 NM_001366722 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 171.667-16 chr13 98022279 98022681 + 0.666667 NA 3' UTR (NM_002271, exon 29 of 29) 3' UTR (NM_002271, exon 29 of 29) 68805 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 174-25 chr2 31595285 31595692 + 0.666667 NA Intergenic L1PB1|LINE|L1 -14550 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 247.667-19 chr2 75827981 75828389 + 0.666667 NA Intergenic L1PA15|LINE|L1 -117270 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 165.333-13 chr11 98958945 98959367 + 0.666667 NA Intergenic Intergenic -61793 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 168.333-64 chr8 29322589 29322994 + 0.666667 NA Intergenic SATR2|Satellite|Satellite 26014 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 185.5-30 chr4 106316225 106316522 + 0.666667 NA promoter-TSS (NM_001163435) promoter-TSS (NM_001163435) -164 NM_001290768 93627 Hs.151498 NM_033115 ENSG00000145348 TBCK HSPC302|IHPRF3|TBCKL TBC1 domain containing kinase protein-coding 232 chr1 9822621 9823158 + 0.666667 NA intron (NM_001009566, intron 1 of 18) intron (NM_001009566, intron 1 of 18) 1637 NM_001302883 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 187.833-34 chrX 69884983 69885487 + 0.666667 NA intron (NM_001005609, intron 1 of 7) L1MB3|LINE|L1 -137622 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 183.333-4 chr1 114376044 114376464 + 0.666667 NA Intergenic MER4A1|LTR|ERV1 134949 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 210-40 chr6 65635012 65635530 + 0.666667 NA intron (NM_001292009, intron 2 of 43) HUERS-P1-int|LTR|ERV1 -55467 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 192.5-13 chr13 46256118 46256564 + 0.666667 NA intron (NM_001282460, intron 7 of 9) MLT1E2-int|LTR|ERVL-MaLR 41503 NR_047493 100861554 Hs.90866 NR_047493 ENSG00000261097 LINC00563 - long intergenic non-protein coding RNA 563 ncRNA 166.167-24 chr22 30649571 30649833 + 0.666667 NA intron (NM_001318370, intron 2 of 2) intron (NM_001318370, intron 2 of 2) 13887 NM_001318370 339665 Hs.660384 NM_001001479 ENSG00000100036 SLC35E4 - solute carrier family 35 member E4 protein-coding 184-28 chr2 39821056 39821420 + 0.666667 NA Intergenic Intergenic -41962 NR_135660 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 248.833 chr1 25182301 25183074 + 0.666667 NA Intergenic Intergenic 49815 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 286.167-7 chr11 79718067 79718717 + 0.666667 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -277362 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 173-27 chr20 44829674 44830057 + 0.666667 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -19319 NM_182970 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 205-21 chr4 48104676 48105225 + 0.666667 NA exon (NM_003328, exon 6 of 15) exon (NM_003328, exon 6 of 15) 29300 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 206.833-4 chr12 67160851 67161485 + 0.666667 NA Intergenic Intergenic -64884 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 255.5-18 chr2 67325550 67326200 + 0.666667 NA Intergenic MER112|DNA|hAT-Charlie -71458 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 183.833-16 chr3 19991524 19991862 + 0.666667 NA intron (NM_001252657, intron 2 of 2) MIRb|SINE|MIR 20571 NM_001252657 151649 Hs.733161 NM_144714 ENSG00000183977 PP2D1 C3orf48 protein phosphatase 2C like domain containing 1 protein-coding 192.167-7 chr10 43268428 43268866 + 0.666667 NA Intergenic L2a|LINE|L2 -1582 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 196.334-11 chr6 10438615 10439348 + 0.666667 NA promoter-TSS (NR_049872) promoter-TSS (NR_049872) -736 NR_049872 100846998 NR_049872 ENSG00000263705 MIR5689 - microRNA 5689 ncRNA 194.667-22 chr15 60447584 60448039 + 0.666667 NA intron (NR_147171, intron 11 of 16) intron (NR_147171, intron 11 of 16) 31331 NR_147171 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 185.333-44 chr6 125779822 125780321 + 0.666667 NA Intergenic Intergenic -1044 NM_001199620 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 181-26 chr20 46486073 46486430 + 0.666667 NA Intergenic Intergenic -20959 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 186.333-27 chr20 58199500 58199812 + 0.666667 NA Intergenic Intergenic 28997 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 233.5-2 chr1 28091133 28091755 + 0.666667 NA Intergenic Intergenic -2807 NR_104214 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 239.834-2 chr12 39549351 39550064 + 0.666667 NA TTS (NM_005164) TTS (NM_005164) 70096 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 260.167-4 chr10 69434668 69435302 + 0.666667 NA Intergenic MER52D|LTR|ERV1 -16480 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 181.333-19 chr2 63840277 63840584 + 0.666667 NA promoter-TSS (NM_001001521) promoter-TSS (NM_001001521) -534 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 172.5-50 chr6 81588201 81588639 + 0.666667 NA Intergenic L1MC2|LINE|L1 164261 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 213-32 chr6 27758974 27759351 + 0.666667 NA Intergenic LTR38C|LTR|ERV1 -2582 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 239.333-35 chr8 102842052 102842540 + 0.666667 NA intron (NM_015878, intron 4 of 12) AluSz6|SINE|Alu 21867 NM_001301668 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 212.833-11 chr2 40961468 40961938 + 0.666667 NA Intergenic Intergenic -449268 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 174.167-14 chr17 59303056 59303344 + 0.666667 NA Intergenic L1PA12|LINE|L1 -28455 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 254.167-12 chr14 84905082 84905571 + 0.666667 NA Intergenic MER57A1|LTR|ERV1 -366606 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 178.833-10 chr14 97307169 97307506 + 0.666667 NA Intergenic Intergenic -151479 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 282.167-11 chr5 28809745 28810613 + 0.666667 NA Intergenic CpG -116691 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 235-6 chr10 115726134 115726681 + 0.666667 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 468382 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 220.5-40 chr7 28093414 28093841 + 0.666667 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -86830 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 187.667 chr1 1504868 1505162 + 0.666667 NA Intergenic LTR13|LTR|ERVK -7147 NM_018188 55210 Hs.23413 NM_018188 ENSG00000197785 ATAD3A HAYOS ATPase family AAA domain containing 3A protein-coding 200.167-23 chr6 110842578 110842952 + 0.666667 NA intron (NM_001287215, intron 1 of 8) L1MEd|LINE|L1 -5781 NR_145728 109616968 NR_145728 ENSG00000212587 SNORA40C - small nucleolar RNA, H/ACA box 40C snoRNA 224.833-13 chr2 51274032 51274399 + 0.666667 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 241614 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 278.667-8 chr12 53727551 53727995 + 0.666667 NA promoter-TSS (NM_020898) promoter-TSS (NM_020898) -321 NM_001143682 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 164.667-12 chr11 63865519 63865912 + 0.666667 NA intron (NM_001163296, intron 1 of 16) intron (NM_001163296, intron 1 of 16) -22822 NM_017490 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 237.333-35 chr6 166414667 166415309 + 0.666667 NA intron (NM_001006932, intron 20 of 21) AluSz|SINE|Alu -31975 NR_073093 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 242-10 chr14 57051424 57051812 + 0.666667 NA Intergenic L2c|LINE|L2 217287 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 175.333-31 chr2 176446228 176446519 + 0.666667 NA Intergenic Intergenic 154679 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 184.333-19 chr18 67959926 67960222 + 0.666667 NA Intergenic AluY|SINE|Alu -145252 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 220.167-9 chr12 44774221 44774758 + 0.666667 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 101172 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 181.5-42 chr6 62515171 62515487 + 0.666667 NA Intergenic Intergenic -229102 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 273.333-23 chrX 99395333 99396018 + 0.666667 NA Intergenic L1M1|LINE|L1 1014598 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 195-22 chr18 22485954 22486463 + 0.666667 NA Intergenic Intergenic -68293 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 192-14 chr14 86454993 86455337 + 0.666667 NA Intergenic Intergenic -450613 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 194.333-22 chr18 66051861 66052327 + 0.666667 NA Intergenic Intergenic 301082 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 177.833-24 chr2 147983022 147983575 + 0.666667 NA intron (NM_001190879, intron 1 of 14) L1MD|LINE|L1 37439 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 169.667-6 chr1 203803064 203803464 + 0.666667 NA intron (NM_014827, intron 4 of 19) AluSq2|SINE|Alu 5741 NM_001174108 100381270 NM_001174108 ENSG00000257315 ZBED6 MGR zinc finger BED-type containing 6 protein-coding 277-14 chr2 32946457 32946890 + 0.666667 NA promoter-TSS (NM_206943) promoter-TSS (NM_206943) -280 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 181.833-10 chr17 41792670 41793027 + 0.666667 NA Intergenic Intergenic -6080 NM_001352774 3728 Hs.514174 NM_002230 ENSG00000173801 JUP CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 253.833-12 chr5 72818491 72819201 + 0.666667 NA intron (NM_001364292, intron 1 of 24) intron (NM_001364292, intron 1 of 24) 2185 NM_001364295 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 198.333-25 chr19 57333417 57333780 + 0.666667 NA Intergenic AluSz|SINE|Alu 13126 NM_213598 125919 Hs.202544 NM_213598 ENSG00000178229 ZNF543 - zinc finger protein 543 protein-coding 212.667-38 chr5 11494285 11494874 + 0.666667 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 94338 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 179.667-26 chr20 259895 260300 + 0.666667 NA 3' UTR (NM_207469, exon 2 of 2) 3' UTR (NM_207469, exon 2 of 2) 2373 NM_207469 400830 Hs.516819 NM_207469 ENSG00000186458 DEFB132 BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827 defensin beta 132 protein-coding 265.333-4 chr12 14365379 14365906 + 0.666667 NA promoter-TSS (NM_018179) promoter-TSS (NM_018179) 10 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 196.833-26 chr7 88702745 88703188 + 0.666667 NA Intergenic Intergenic -56734 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 240.333-15 chr4 24978849 24979565 + 0.666667 NA intron (NM_173463, intron 1 of 12) LTR16C|LTR|ERVL 997 NM_173463 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 179-26 chr22 44017448 44017734 + 0.666667 NA intron (NM_001003828, intron 2 of 13) intron (NM_001003828, intron 2 of 13) -6686 NM_013327 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 182-34 chr4 143442102 143442407 + 0.666667 NA intron (NM_002039, intron 6 of 9) intron (NM_002039, intron 6 of 9) -71448 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 172-19 chr16 86296819 86297093 + 0.666667 NA Intergenic Intergenic 10525 NR_038438 146513 Hs.434338 NR_038438 ENSG00000268532 LINC02135 - long intergenic non-protein coding RNA 2135 ncRNA 183.167-13 chr16 13812177 13812487 + 0.666667 NA Intergenic Intergenic -107825 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 164.667-41 chr5 32590908 32591187 + 0.666667 NA intron (NM_006713, intron 2 of 4) AluSx1|SINE|Alu 5490 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 269.667-27 chr7 133275217 133275689 + 0.666667 NA intron (NM_021807, intron 2 of 17) intron (NM_021807, intron 2 of 17) -15428 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 225.5-2 chr1 80901913 80902308 + 0.666667 NA Intergenic Intergenic 260823 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 286.667-21 chr6 33588943 33589813 + 0.666667 NA TTS (NR_028361) TTS (NR_028361) 3960 NR_027908 401253 Hs.520075 NM_207497 ENSG00000197251 LINC00336 C6orf227|NCRNA00336 long intergenic non-protein coding RNA 336 ncRNA 202.833-8 chr14 20631213 20631825 + 0.666667 NA Intergenic Intergenic 10172 NM_001001968 341799 Hs.513132 NM_001001968 ENSG00000181803 OR6S1 OR14-37|OR6S1Q olfactory receptor family 6 subfamily S member 1 protein-coding 188.167-41 chr9 126706204 126706658 + 0.666667 NA Intergenic Intergenic 91988 NM_001174147 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 183.333-33 chr2 48720281 48720714 + 0.666667 NA intron (NM_000233, intron 6 of 10) intron (NM_000233, intron 6 of 10) 35227 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 229.5-21 chr20 50793803 50794150 + 0.666667 NA promoter-TSS (NM_198799) promoter-TSS (NM_198799) -918 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 281.667-25 chr8 108943482 108944164 + 0.666667 NA Intergenic Intergenic -142805 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 176-34 chr5 121610651 121611057 + 0.666667 NA Intergenic L1MC3|LINE|L1 -241028 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 212.5-3 chr1 159111967 159112599 + 0.666667 NA Intergenic L1M6|LINE|L1 -35382 NM_001348247 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 193.833-28 chr7 49949397 49949891 + 0.666667 NA intron (NM_001159878, intron 7 of 7) L1MB3|LINE|L1 143602 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 176.833-20 chr2 32579052 32579504 + 0.666667 NA intron (NM_016252, intron 66 of 73) intron (NM_016252, intron 66 of 73) -4460 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 209.667-3 chr1 177080365 177080833 + 0.666667 NA intron (NM_207108, intron 1 of 21) MIR3|SINE|MIR -51154 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 170.333-30 chr2 95248265 95248618 + 0.666667 NA Intergenic L1PA16|LINE|L1 -26008 NM_001165977 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 168.167-8 chr12 49776282 49776624 + 0.666667 NA Intergenic Intergenic 34644 NM_001098576 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 197-12 chr18 2776668 2777146 + 0.666667 NA intron (NM_015295, intron 42 of 47) FAM|SINE|Alu -70099 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 174.333-21 chr2 148201549 148201908 + 0.666667 NA intron (NM_018328, intron 3 of 14) LTR28C|LTR|ERV1 -180124 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 236.5-12 chr16 66863199 66863606 + 0.666667 NA Intergenic L1MC4|LINE|L1 -17113 NM_001329931 57546 Hs.632214 NM_020786 ENSG00000172840 PDP2 PDPC 2|PPM2B|PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 199.333-17 chr14 65116024 65116595 + 0.666667 NA Intergenic Intergenic -13614 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 193.667-38 chr3 195862844 195863309 + 0.666667 NA TTS (NM_005781) TTS (NM_005781) -2672 NR_134939 101929697 Hs.551750 NR_134939 LINC01983 - long intergenic non-protein coding RNA 1983 ncRNA 205.5-4 chr10 43356602 43356961 + 0.666667 NA Intergenic LTR8|LTR|ERV1 -14855 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 222.333-20 chr2 180981229 180981834 + 0.666667 NA intron (NM_001278554, intron 1 of 5) intron (NM_001278554, intron 1 of 5) 407 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 207.167-27 chr7 70274520 70274896 + 0.666667 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 676233 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 172.167-24 chr6 50617472 50617872 + 0.666667 NA Intergenic L1MDa|LINE|L1 -95872 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 173.167-43 chr9 30770424 30770759 + 0.666667 NA Intergenic Intergenic -362137 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 181.833-7 chr15 58179701 58180077 + 0.666667 NA intron (NM_020980, intron 5 of 5) intron (NM_020980, intron 5 of 5) 41508 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 167-37 chr6 49775192 49775524 + 0.666667 NA Intergenic MER57D|LTR|ERV1 11927 NM_138733 5232 Hs.367727 NM_138733 ENSG00000170950 PGK2 HEL-S-272|PGKB|PGKPS|dJ417L20.2 phosphoglycerate kinase 2 protein-coding 258.167-12 chr16 66899697 66900140 + 0.666667 NA Intergenic L1M5|LINE|L1 18967 NM_001204746 1014 Hs.513660 NM_004062 ENSG00000166589 CDH16 - cadherin 16 protein-coding 241.833-3 chr17 8409008 8409594 + 0.666667 NA Intergenic L1M5|LINE|L1 -11474 NM_001146684 643904 Hs.526550 NM_001146684 ENSG00000189051 RNF222 - ring finger protein 222 protein-coding 173.167-25 chr3 5078083 5078516 + 0.666667 NA Intergenic MIRb|SINE|MIR -43993 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 230.333-14 chr17 34148522 34149037 + 0.666667 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 8027 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 216-17 chr15 62972863 62973458 + 0.666667 NA Intergenic Intergenic -69587 NM_001365777 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 190.167-27 chr9 15111308 15111859 + 0.666667 NA Intergenic MIR|SINE|MIR 118256 NR_003920 389705 Hs.431257 NR_003920 LOC389705 - histone PARylation factor 1 pseudogene pseudo 208-23 chr2 2101892 2102337 + 0.666667 NA intron (NM_015025, intron 3 of 24) intron (NM_015025, intron 3 of 24) -217118 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 208-26 chr2 124396775 124397239 + 0.666667 NA intron (NM_130773, intron 3 of 23) MIRb|SINE|MIR 371720 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 307.167-11 chr17 70901759 70902513 + 0.666667 NA Intergenic Intergenic 300043 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 165.333-30 chr3 172219823 172220194 + 0.666667 NA intron (NM_001135095, intron 3 of 25) MADE1|DNA|TcMar-Mariner 179477 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 231.666-5 chr2 206064006 206064678 + 0.666667 NA intron (NM_017759, intron 1 of 10) intron (NM_017759, intron 1 of 10) 21832 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 177-2 chr1 109607198 109607516 + 0.666667 NA intron (NM_005272, intron 4 of 7) AluY|SINE|Alu 5727 NM_005272 2780 Hs.36973 NM_005272 ENSG00000134183 GNAT2 ACHM4|GNATC G protein subunit alpha transducin 2 protein-coding 183.667-29 chr2 116452358 116452878 + 0.666667 NA Intergenic L1PBa|LINE|L1 1108803 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 237.833-6 chr16 46830752 46831161 + 0.666667 NA promoter-TSS (NR_145835) promoter-TSS (NR_145835) 92 NR_145835 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 177.333-38 chr8 117158103 117158607 + 0.666667 NA intron (NM_173851, intron 4 of 7) L3|LINE|CR1 23360 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 266.5-19 chr4 75750420 75750902 + 0.666667 NA intron (NM_003715, intron 1 of 23) AluSc|SINE|Alu 26139 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 219.667-26 chr4 40150779 40151272 + 0.666667 NA intron (NM_001318359, intron 17 of 18) intron (NM_001318359, intron 17 of 18) -40055 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 213.667-36 chr4 96044674 96045131 + 0.666667 NA Intergenic Intergenic 204809 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 246.167-15 chr2 9374481 9375104 + 0.666667 NA exon (NM_001135191, exon 17 of 27) exon (NM_001135191, exon 17 of 27) 47799 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 228.333-31 chr9 27668271 27668721 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -94630 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 236.333-9 chr15 35078458 35078934 + 0.666667 NA Intergenic Intergenic 6712 NM_001355281 388112 Hs.635882 NM_001355281 ENSG00000255192 NANOGP8 NANOGP1|PN8 Nanog homeobox retrogene P8 protein-coding 171.5-19 chr16 68658917 68659228 + 0.666667 NA intron (NM_001793, intron 2 of 15) MIR|SINE|MIR 13762 NM_001317195 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 213.667-3 chr11 36443907 36444601 + 0.666667 NA intron (NM_001160168, intron 4 of 5) L1ME3G|LINE|L1 43257 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 165.667-23 chr15 60695430 60695779 + 0.666667 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 14035 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 176.167-17 chr15 97043260 97043833 + 0.666667 NA Intergenic Intergenic 260111 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 163.333-28 chr19 45501241 45501596 + 0.666667 NA intron (NM_001080401, intron 4 of 4) intron (NM_001080401, intron 4 of 4) 2945 NM_001080401 147699 Hs.532872 NM_178494 ENSG00000213889 PPM1N - protein phosphatase, Mg2+/Mn2+ dependent 1N (putative) protein-coding 182-20 chr2 40058736 40059190 + 0.666667 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 141329 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 172-51 chr8 100821813 100822148 + 0.666667 NA Intergenic Intergenic -99892 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 216.5-21 chr17 60420981 60421607 + 0.666667 NA Intergenic Intergenic -1195 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 166-30 chr15 27064949 27065219 + 0.666667 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 93903 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 194.333-18 chr14 99922299 99922789 + 0.666667 NA intron (NM_004434, intron 17 of 21) L1MB7|LINE|L1 -48878 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 163.833-19 chr17 52012212 52012609 + 0.666667 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 146304 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 210 chr1 64192304 64192697 + 0.666667 NA Intergenic LTR18A|LTR|ERVL -11123 NM_001366233 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 188.5-25 chr21 17357580 17357926 + 0.666667 NA Intergenic Intergenic -81137 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 186.833-16 chr4 113328400 113328799 + 0.666667 NA intron (NM_001354272, intron 29 of 45) intron (NM_001354272, intron 29 of 45) 35760 NM_001354282 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 189-40 chr4 57326417 57326830 + 0.666667 NA Intergenic L2c|LINE|L2 -99249 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 229.667-19 chr20 7479779 7480217 + 0.666667 NA Intergenic Intergenic 108390 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 172-46 chr6 123687036 123687363 + 0.666667 NA Intergenic L1ME1|LINE|L1 -50106 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 177.833-36 chr8 118949777 118950134 + 0.666667 NA intron (NM_002546, intron 1 of 4) intron (NM_002546, intron 1 of 4) 1930 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 198.333-9 chr10 94208381 94208738 + 0.666667 NA intron (NM_001165979, intron 3 of 31) MER5A1|DNA|hAT-Charlie 78511 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 165.667-3 chr1 84417558 84417823 + 0.666667 NA Intergenic L1MA6|LINE|L1 9339 NM_058248 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 261.333-9 chr22 36979952 36980757 + 0.666667 NA Intergenic MER67B|LTR|ERV1 15106 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 164.333-7 chr10 70391970 70392356 + 0.666667 NA Intergenic AluJb|SINE|Alu -9513 NM_001278214 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 219.333-9 chr10 65346215 65346746 + 0.666667 NA Intergenic Intergenic -224945 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 221-22 chr20 59870484 59870886 + 0.666667 NA intron (NM_014258, intron 35 of 44) L1M5|LINE|L1 62952 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 173.667-16 chr13 51574269 51574563 + 0.666667 NA Intergenic AluSq2|SINE|Alu -10046 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 213-22 chr2 53949609 53949986 + 0.666667 NA intron (NM_014614, intron 1 of 46) L1MB1|LINE|L1 21196 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 182.333-25 chr7 96987817 96988150 + 0.666667 NA intron (NR_015448, intron 1 of 2) intron (NR_015448, intron 1 of 2) -17570 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 164.333-27 chr2 30663028 30663475 + 0.666667 NA Intergenic Intergenic 144195 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 182.167-16 chr20 31657909 31658232 + 0.666667 NA Intergenic AluSx1|SINE|Alu 20158 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 219.167 chr1 151190023 151190469 + 0.666667 NA promoter-TSS (NM_001271088) promoter-TSS (NM_001271088) -49 NM_001271088 6944 Hs.2430 NM_005997 ENSG00000163159 VPS72 CFL1|Swc2|TCFL1|YL-1|YL1 vacuolar protein sorting 72 homolog protein-coding 208.834-4 chr4 99376051 99376720 + 0.666667 NA Intergenic HAL1|LINE|L1 -23639 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 230.5-6 chr14 64319582 64320135 + 0.666667 NA intron (NM_001291712, intron 2 of 13) L1MC2|LINE|L1 18692 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 176-11 chr14 26567786 26568088 + 0.666667 NA intron (NM_001366391, intron 2 of 5) intron (NM_001366391, intron 2 of 5) -14507 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 194.667-54 chr7 68878252 68878764 + 0.666667 NA Intergenic Intergenic 719116 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 163.333-61 chrX 25891984 25892363 + 0.666667 NA Intergenic Intergenic -246170 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 214-56 chrX 51393390 51393964 + 0.666667 NA Intergenic Intergenic -13271 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 197-13 chr19 48619130 48619824 + 0.666667 NA promoter-TSS (NM_001204159) promoter-TSS (NM_001204159) -29 NM_001204159 56848 Hs.528006 NM_020126 ENSG00000063176 SPHK2 SK 2|SK-2|SPK 2|SPK-2 sphingosine kinase 2 protein-coding 192-2 chr1 42999757 43000164 + 0.666667 NA Intergenic AluSx1|SINE|Alu 40911 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 192-51 chr9 99298120 99298542 + 0.666667 NA Intergenic Intergenic 76049 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - SEC61 translocon beta subunit protein-coding 208.333-20 chr19 35249421 35249917 + 0.666667 NA intron (NM_205834, intron 1 of 9) intron (NM_205834, intron 1 of 9) 1013 NM_015925 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 171.333-27 chr2 207782003 207782364 + 0.666667 NA Intergenic Intergenic -12277 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 165.334-3 chr19 37582920 37583460 + 0.666667 NA intron (NR_038250, intron 2 of 2) L2b|LINE|L2 11556 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 201.667-42 chr5 2871586 2871952 + 0.666667 NA Intergenic Intergenic -46085 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 203.333-15 chr12 8580512 8581002 + 0.666667 NA Intergenic Intergenic 32102 NM_001330343 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 191-32 chr21 22522019 22522430 + 0.666667 NA Intergenic L1PB4|LINE|L1 423607 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 173.833-33 chr7 124163283 124163813 + 0.666667 NA Intergenic L1PA17|LINE|L1 -130481 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 210-17 chr16 85569936 85570559 + 0.666667 NA Intergenic Intergenic -41162 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 174-42 chr6 123893508 123893814 + 0.666667 NA intron (NM_001040214, intron 1 of 6) MIR3|SINE|MIR 89796 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 227-28 chr8 77947601 77947983 + 0.666667 NA Intergenic Intergenic 497095 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 167.333-23 chr14 73852128 73852483 + 0.666667 NA intron (NM_001371328, intron 1 of 8) AluSc8|SINE|Alu 358 NM_001371328 205.5-14 chr14 58499442 58500080 + 0.666667 NA intron (NM_001329944, intron 27 of 31) AluSx1|SINE|Alu 60080 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 170.833-32 chr6 101037344 101037687 + 0.666667 NA Intergenic Intergenic -156143 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 163.167-17 chr17 59739030 59739306 + 0.666667 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 31514 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 207-15 chr2 79000199 79000688 + 0.666667 NA Intergenic Intergenic -25259 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 185 chr1 35844141 35844493 + 0.666667 NA intron (NR_146062, intron 15 of 19) AluJb|SINE|Alu -25491 NM_001317123 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute RISC component 1 protein-coding 175-20 chr15 72032254 72032559 + 0.666667 NA intron (NM_006901, intron 3 of 41) intron (NM_006901, intron 3 of 41) -81852 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 184.167-24 chr20 53303852 53304157 + 0.666667 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 118721 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 168-19 chr14 84454566 84454970 + 0.666667 NA Intergenic Intergenic -817164 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 248-31 chr5 59020560 59021046 + 0.666667 NA intron (NM_006203, intron 6 of 14) intron (NM_006203, intron 6 of 14) 18673 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 215.167-3 chr1 210270330 210270948 + 0.666667 NA Intergenic Intergenic -36754 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 207.5-36 chr7 92294208 92294664 + 0.666667 NA intron (NM_019004, intron 1 of 19) intron (NM_019004, intron 1 of 19) -48336 NM_001350681 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 197.667-15 chr12 48173215 48173679 + 0.666667 NA Intergenic L1MEc|LINE|L1 -10197 NM_001013635 387856 Hs.251699 NM_001013635 ENSG00000177875 CCDC184 C12orf68 coiled-coil domain containing 184 protein-coding 191.5-33 chr3 8781358 8781690 + 0.666667 NA Intergenic L1MA9|LINE|L1 -11910 NM_000916 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 234.333-27 chr3 173151340 173151988 + 0.666667 NA Intergenic L1MA1|LINE|L1 -10429 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 202.333-11 chr11 98841923 98842530 + 0.666667 NA Intergenic L1MA3|LINE|L1 -178723 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 232.5-33 chr9 88875833 88876181 + 0.666667 NA Intergenic L1ME2|LINE|L1 -114856 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 166.667-34 chr20 56347995 56348394 + 0.666667 NA Intergenic MER67C|LTR|ERV1 -10780 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 215.333-27 chr2 203324520 203324940 + 0.666667 NA Intergenic AluSx1|SINE|Alu -3509 NM_001282932 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 184-19 chr12 56059768 56060217 + 0.666667 NA Intergenic AluSx|SINE|Alu 18074 NM_001029 6231 Hs.447562 NM_001029 ENSG00000197728 RPS26 DBA10|S26|eS26 ribosomal protein S26 protein-coding 205-3 chr10 123799136 123799495 + 0.666667 NA intron (NM_198148, intron 4 of 13) MIR|SINE|MIR 92492 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 183.333-49 chr4 120557358 120557771 + 0.666667 NA Intergenic MER44C|DNA|TcMar-Tigger 365302 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 208.667-23 chr2 48248683 48249186 + 0.666667 NA Intergenic Intergenic -65748 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 189-2 chr1 59698557 59699011 + 0.666667 NA non-coding (NR_103473, exon 17 of 17) non-coding (NR_103473, exon 17 of 17) 34512 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 167.667-33 chr4 58132439 58132828 + 0.666667 NA Intergenic Intergenic 403695 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 229.667-37 chr5 167508568 167509142 + 0.666667 NA intron (NM_001122679, intron 3 of 29) AluSx|SINE|Alu -64804 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 182.833-7 chr10 27483017 27483343 + 0.666667 NA Intergenic Intergenic -20994 NM_001256415 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 194.833-29 chr9 35303475 35303988 + 0.666667 NA exon (NM_001371189, exon 9 of 40) exon (NM_001371189, exon 9 of 40) -38165 NM_001371188 360.667-14 chrX 115940523 115941274 + 0.666667 NA intron (NR_130730, intron 2 of 2) intron (NR_130730, intron 2 of 2) 28213 NR_132337 642776 Hs.634316 NR_130730 ENSG00000235244 DANT2 - DXZ4 associated non-coding transcript 2, distal ncRNA 233-18 chr3 58333594 58334149 + 0.666667 NA intron (NM_001349498, intron 1 of 17) intron (NM_001349498, intron 1 of 17) 565 NM_001349498 54899 Hs.190544 NM_017771 ENSG00000168297 PXK MONAKA|SLOB PX domain containing serine/threonine kinase like protein-coding 166-60 chr6 56094098 56094427 + 0.666667 NA intron (NM_030820, intron 17 of 29) MLT1D-int|LTR|ERVL-MaLR -2600 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 234.5-11 chr12 115602732 115603141 + 0.666667 NA Intergenic AluSq|SINE|Alu 545718 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 164.333-2 chr1 55484463 55484827 + 0.666667 NA Intergenic Intergenic 259004 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 164.333-47 chr7 53093833 53094189 + 0.666667 NA Intergenic Intergenic 58378 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 198.667-18 chr17 7841493 7842050 + 0.666667 NA intron (NM_001080424, intron 1 of 21) CpG 1854 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 166.167-38 chr8 137248426 137248983 + 0.666667 NA Intergenic L1PB4|LINE|L1 164884 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 170.667-5 chr12 22678727 22679027 + 0.666667 NA intron (NM_018638, intron 6 of 7) intron (NM_018638, intron 6 of 7) 53706 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 182.667-30 chr20 43690757 43691100 + 0.666667 NA intron (NM_001278610, intron 4 of 12) intron (NM_001278610, intron 4 of 12) 23814 NM_002466 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 166-40 chr19 30812911 30813398 + 0.666667 NA Intergenic Intergenic -354356 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 185-24 chr17 69806864 69807221 + 0.666667 NA intron (NR_109972, intron 3 of 4) MIR|SINE|MIR -154665 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 172-8 chr11 97119977 97120271 + 0.666667 NA Intergenic MIR|SINE|MIR 611699 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 220-18 chr2 161837238 161837703 + 0.666667 NA intron (NM_001354443, intron 4 of 25) L1ME1|LINE|L1 213054 NM_001354461 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 170.167-22 chr2 128600510 128600870 + 0.666667 NA Intergenic MIR|SINE|MIR -263910 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 285.333-9 chr5 147117590 147118138 + 0.666667 NA Intergenic L1MA4A|LINE|L1 -36344 NM_001271899 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 220.5-32 chr3 116134762 116135361 + 0.666667 NA intron (NM_001318915, intron 1 of 8) MIRb|SINE|MIR -224963 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 194.667-34 chr2 68120846 68121189 + 0.666667 NA Intergenic Intergenic 36510 NM_138458 116143 Hs.631877 NM_138458 ENSG00000243667 WDR92 - WD repeat domain 92 protein-coding 170.833-6 chr10 17132989 17133406 + 0.666667 NA Intergenic Intergenic -3380 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 172.667-4 chr1 245834630 245835038 + 0.666667 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) 582578 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 183.333-35 chr2 89836660 89837055 + 0.666667 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -198950 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 197.167-34 chr6 38870587 38871014 + 0.666667 NA intron (NM_001371, intron 48 of 91) LTR86B2|LTR|ERVL 82307 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 181-37 chr7 4123733 4124162 + 0.666667 NA intron (NM_152744, intron 25 of 44) intron (NM_152744, intron 25 of 44) -5738 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 165.167-34 chr5 27232501 27233187 + 0.666667 NA Intergenic Intergenic -194258 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 168.667-2 chr10 14008316 14008685 + 0.666667 NA promoter-TSS (NM_001318336) promoter-TSS (NM_001318336) 50 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 181.5-24 chr2 35471628 35472003 + 0.666667 NA TTS (NR_039629) TTS (NR_039629) 410 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 227.334-2 chr1 67764461 67765028 + 0.666667 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) -67544 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 194.667-56 chr8 121848500 121849055 + 0.666667 NA Intergenic Intergenic -207337 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 262.333-19 chr7 26286333 26287000 + 0.666667 NA Intergenic Intergenic -5212 NM_001362753 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 271.5-9 chr12 61132347 61132974 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL 1060179 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 169.834-10 chr7 105915545 105916071 + 0.666667 NA Intergenic MIR|SINE|MIR -39223 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 214-13 chr14 45740939 45741473 + 0.666667 NA Intergenic Intergenic -25604 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 198.667-3 chr10 62250387 62251154 + 0.666667 NA intron (NM_001282941, intron 2 of 4) AluJb|SINE|Alu 18074 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 164.167-8 chr11 37314109 37314470 + 0.666667 NA Intergenic Intergenic -624312 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 232-12 chr11 115542100 115542505 + 0.666667 NA Intergenic L3|LINE|CR1 -37887 NM_001301043 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 168.667-3 chr10 61576232 61576660 + 0.666667 NA Intergenic L1M5|LINE|L1 -86483 NM_001366909 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 210-35 chr5 16809547 16810095 + 0.666667 NA intron (NM_012334, intron 3 of 40) intron (NM_012334, intron 3 of 40) 126467 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 364.333-8 chr3 107675308 107676000 + 0.666667 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 152692 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 236.333-10 chr15 42125828 42126258 + 0.666667 NA Intergenic L1MC1|LINE|L1 30593 NR_033151 255189 Hs.231873 NM_213600 ENSG00000168907 PLA2G4F PLA2G4FZ phospholipase A2 group IVF protein-coding 216-29 chr20 31316175 31316545 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -7775 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 217-31 chr7 37207212 37207574 + 0.666667 NA intron (NM_001206480, intron 13 of 21) AluSx3|SINE|Alu 146275 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 191.167-23 chr6 17803936 17804413 + 0.666667 NA intron (NM_001105567, intron 20 of 36) AluY|SINE|Alu 97131 NR_134618 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 178.167-26 chr7 82602541 82603003 + 0.666667 NA Intergenic MIR|SINE|MIR -158816 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 230-12 chr11 58418929 58419528 + 0.666667 NA Intergenic L1MA6|LINE|L1 4085 NM_001005566 390190 Hs.553753 NM_001005566 ENSG00000172365 OR5B2 OR11-240|OST073 olfactory receptor family 5 subfamily B member 2 protein-coding 167.833-7 chr12 7258067 7258556 + 0.666667 NA Intergenic Intergenic -46021 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 180-45 chr3 37952833 37953151 + 0.666667 NA intron (NM_005808, intron 2 of 6) MER33|DNA|hAT-Charlie -16412 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 163.333-45 chr4 177442113 177442593 + 0.666667 NA promoter-TSS (NM_000027) promoter-TSS (NM_000027) 84 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 186.667-54 chr6 156717047 156717350 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -60657 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 192.5-42 chr5 153270697 153271403 + 0.666667 NA Intergenic AluSx|SINE|Alu -219474 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 259-20 chr2 49916892 49917518 + 0.666667 NA Intergenic Intergenic 56998 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 271.5-30 chr4 69152217 69152650 + 0.666667 NA Intergenic Intergenic -29667 NR_136191 105377267 Hs.654304 NR_136191 ENSG00000250696 LOC105377267 - uncharacterized LOC105377267 ncRNA 163.333-48 chr5 43193917 43194379 + 0.666667 NA intron (NR_072980, intron 1 of 3) intron (NR_072980, intron 1 of 3) 1296 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 180-54 chr6 154773631 154773964 + 0.666667 NA intron (NM_001286189, intron 3 of 21) L1MB7|LINE|L1 40419 NM_001286188 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 189.167-15 chr13 48674867 48675217 + 0.666667 NA intron (NM_001308471, intron 1 of 1) L1PA7|LINE|L1 21113 NM_001308468 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 176.667-32 chr20 5120154 5120517 + 0.666667 NA promoter-TSS (NM_182649) promoter-TSS (NM_182649) -377 NM_182649 5111 Hs.147433 NM_002592 ENSG00000132646 PCNA ATLD2 proliferating cell nuclear antigen protein-coding 166-64 chr8 17730762 17731130 + 0.666667 NA intron (NM_001363057, intron 3 of 14) L1MB3|LINE|L1 -8371 NM_001166393 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 175.333-26 chr2 48108443 48108777 + 0.666667 NA Intergenic MIRb|SINE|MIR -202817 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 212-11 chr10 57173721 57174217 + 0.666667 NA Intergenic Intergenic 130590 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 225.667-2 chr1 108871205 108871635 + 0.666667 NA Intergenic LTR16A1|LTR|ERVL -5565 NM_013296 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 173.667-28 chr2 14085364 14085782 + 0.666667 NA Intergenic L1PA7|LINE|L1 315385 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 205-12 chr2 73926860 73927421 + 0.666667 NA intron (NR_134895, intron 1 of 2) CpG 260 NR_134897 1716 Hs.469022 NM_001929 ENSG00000114956 DGUOK MTDPS3|NCPH|PEOB4|dGK deoxyguanosine kinase protein-coding 229-6 chr18 2342860 2343357 + 0.666667 NA Intergenic L1M4|LINE|L1 228397 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 220.833-19 chr5 43107470 43107877 + 0.666667 NA Intergenic Intergenic -13241 NM_001330704 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 179.167-19 chr3 12696494 12697018 + 0.666667 NA Intergenic AluSx|SINE|Alu -32555 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 164.333-5 chr1 160892128 160892661 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -7214 NM_017625 55600 Hs.50813 NM_017625 ENSG00000179914 ITLN1 HL-1|HL1|INTL|ITLN|LFR|hIntL|omentin intelectin 1 protein-coding 239-19 chr20 46128356 46128973 + 0.666667 NA intron (NR_136327, intron 7 of 7) intron (NR_136327, intron 7 of 7) 10350 NR_126502 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 185.333-45 chr6 126322331 126322657 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR -17295 NM_001012507 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 216.667-14 chr14 48520544 48520926 + 0.666667 NA Intergenic Intergenic -725721 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 272.667-6 chr1 179023029 179023665 + 0.666667 NA Intergenic Intergenic -2457 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 181-8 chr12 115594673 115595010 + 0.666667 NA Intergenic Intergenic 553813 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 219.333-28 chr3 102672556 102672958 + 0.666667 NA Intergenic Intergenic 237742 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 276.5 chr1 181671813 181672378 + 0.666667 NA intron (NM_001205293, intron 7 of 47) L1PREC2|LINE|L1 188578 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 294.333-7 chr2 27406836 27407571 + 0.666667 NA intron (NM_177983, intron 1 of 9) AluSx|SINE|Alu 2388 NM_177983 5496 Hs.643951 NM_177983 ENSG00000115241 PPM1G PP2CG|PP2CGAMMA|PPP2CG protein phosphatase, Mg2+/Mn2+ dependent 1G protein-coding 190.333-10 chr12 25188619 25189221 + 0.666667 NA intron (NM_001204102, intron 2 of 16) intron (NM_001204102, intron 2 of 16) 6240 NM_001352066 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 259.5-16 chr2 80473105 80473786 + 0.666667 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 160066 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 166.667-46 chr6 73995468 73995814 + 0.666667 NA Intergenic Intergenic -73810 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 223-43 chr8 78493013 78493498 + 0.666667 NA Intergenic Intergenic -23085 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 181-6 chr11 38511077 38511613 + 0.666667 NA Intergenic L1MB3|LINE|L1 135011 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 226-23 chr2 220915394 220916007 + 0.666667 NA Intergenic Intergenic 656604 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 167 chr1 25710152 25710459 + 0.666667 NA intron (NM_020379, intron 2 of 11) MIRb|SINE|MIR -89888 NM_020451 57190 Hs.323396 NM_020451 ENSG00000162430 SELENON CFTD|MDRS1|RSMD1|RSS|SELN|SEPN1 selenoprotein N protein-coding 195.667-16 chr15 63686632 63687000 + 0.666667 NA intron (NM_003922, intron 33 of 77) L2c|LINE|L2 -85989 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 169.667-48 chr5 59472632 59472951 + 0.666667 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 113707 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 163.667-43 chr4 56738432 56738796 + 0.666667 NA Intergenic L2a|LINE|L2 -56908 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 186.333-6 chr11 75340399 75340862 + 0.666667 NA intron (NM_004041, intron 1 of 15) intron (NM_004041, intron 1 of 15) -5444 NR_029891 442900 NR_029891 ENSG00000199090 MIR326 MIRN326|hsa-mir-326|mir-326 microRNA 326 ncRNA 190.5-37 chr5 21391465 21391982 + 0.666667 NA Intergenic L2|LINE|L2 -67757 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 242-29 chr6 69865155 69865699 + 0.666667 NA Intergenic Intergenic -1129 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 378-18 chr5 157575429 157576240 + 0.666667 NA promoter-TSS (NM_033274) promoter-TSS (NM_033274) -59 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 164.833-10 chr2 4328799 4329176 + 0.666667 NA Intergenic L1ME3|LINE|L1 327235 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 198.833-20 chr3 52970743 52971218 + 0.666667 NA intron (NM_016329, intron 1 of 20) AluJb|SINE|Alu -73432 NM_001198974 100526772 NM_001198974 ENSG00000248592 STIMATE-MUSTN1 TMEM110-MUSTN1 STIMATE-MUSTN1 readthrough protein-coding 212-6 chr1 205321355 205321896 + 0.666667 NA exon (NM_030952, exon 1 of 7) exon (NM_030952, exon 1 of 7) 120 NM_030952 81788 Hs.497512 NM_030952 ENSG00000163545 NUAK2 SNARK NUAK family kinase 2 protein-coding 275.667-7 chr14 69259392 69260094 + 0.666667 NA promoter-TSS (NM_001168368) promoter-TSS (NM_001168368) -415 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 248.167-6 chr12 57666614 57667099 + 0.666667 NA Intergenic MER57-int|LTR|ERV1 -27099 NM_001261420 10956 Hs.527861 NM_006812 ENSG00000135506 OS9 ERLEC2|OS-9 OS9 endoplasmic reticulum lectin protein-coding 232.667-7 chr11 9079021 9079595 + 0.666667 NA intron (NM_001367977, intron 3 of 22) intron (NM_001367977, intron 3 of 22) 11071 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 201.167-10 chr13 67736767 67737306 + 0.666667 NA Intergenic Intergenic 364649 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 179.333-53 chr9 28364959 28365384 + 0.666667 NA intron (NM_001354574, intron 4 of 5) L2c|LINE|L2 354134 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 307.5-5 chr10 23020684 23021584 + 0.666667 NA intron (NM_001282745, intron 16 of 18) L1PA16|LINE|L1 -74445 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 226.5-4 chr1 65528157 65528570 + 0.666667 NA intron (NM_001198687, intron 1 of 18) intron (NM_001198687, intron 1 of 18) 2674 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 274-31 chr7 110358180 110358805 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -398279 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 191.333-19 chr2 22382247 22382611 + 0.666667 NA Intergenic Intergenic -154050 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 257.333-2 chr1 84479303 84479751 + 0.666667 NA intron (NM_025065, intron 1 of 8) CpG 261 NM_025065 80135 Hs.481202 NM_025065 ENSG00000117133 RPF1 BXDC5 ribosome production factor 1 homolog protein-coding 210.667-44 chr6 137129289 137129722 + 0.666667 NA Intergenic L1PB1|LINE|L1 44139 NM_052962 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 174.167-19 chr2 42928693 42929035 + 0.666667 NA Intergenic Intergenic 110679 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 192.667-32 chr6 111512968 111513364 + 0.666667 NA intron (NR_034109, intron 1 of 1) AluJb|SINE|Alu -29451 NM_002912 5980 Hs.232021 NM_002912 ENSG00000009413 REV3L POLZ|REV3 REV3 like, DNA directed polymerase zeta catalytic subunit protein-coding 164.333-38 chr5 74753644 74754002 + 0.666667 NA intron (NR_104006, intron 5 of 19) L1PBa|LINE|L1 13294 NM_001281302 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 219.333-15 chr15 65452400 65452945 + 0.666667 NA intron (NM_017743, intron 15 of 17) intron (NM_017743, intron 15 of 17) -29725 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 206-27 chr4 37883194 37883538 + 0.666667 NA Intergenic L4_A_Mam|LINE|RTE-X -7718 NM_001253912 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 203.167-2 chr1 183922430 183922903 + 0.666667 NA intron (NM_001297669, intron 18 of 18) intron (NM_001297669, intron 18 of 18) 115062 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 233.667-10 chr14 58396185 58396719 + 0.666667 NA intron (NM_207377, intron 2 of 4) CpG-7319 522 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 248-17 chr15 40518847 40519459 + 0.666667 NA Intergenic L1ME4a|LINE|L1 13397 NR_002208 359821 Hs.678598 NR_002208 MRPL42P5 - mitochondrial ribosomal protein L42 pseudogene 5 pseudo 176.833-9 chr12 7724954 7725459 + 0.666667 NA Intergenic Intergenic 13773 NM_199286 359787 Hs.131358 NM_199286 ENSG00000187569 DPPA3 Pgc7|STELLA developmental pluripotency associated 3 protein-coding 166-69 chr9 103402230 103402608 + 0.666667 NA Intergenic L1MA4|LINE|L1 -77386 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 184.5-50 chr8 62038710 62039032 + 0.666667 NA Intergenic Intergenic 149032 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 163.667-49 chr6 17589168 17589583 + 0.666667 NA Intergenic MER5B|DNA|hAT-Charlie -10927 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 222.667-15 chr14 78211028 78211450 + 0.666667 NA intron (NR_073547, intron 1 of 20) MIRb|SINE|MIR 40866 NM_001366425 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 211.667-20 chr2 103856621 103857298 + 0.666667 NA Intergenic Intergenic 551373 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 254.333-12 chr14 28083275 28083983 + 0.666667 NA Intergenic LTR78|LTR|ERV1 -410408 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 186.833-8 chr17 33039917 33040452 + 0.666667 NA intron (NM_183377, intron 3 of 9) intron (NM_183377, intron 3 of 9) 47333 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 164.5-56 chr8 137342902 137343255 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie 70510 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 179-8 chr11 68525701 68526151 + 0.666667 NA intron (NM_001352348, intron 3 of 24) intron (NM_001352348, intron 3 of 24) 65174 NM_001352374 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 179-19 chr17 41919057 41919471 + 0.666667 NA promoter-TSS (NM_001303274) promoter-TSS (NM_001303274) -242 NM_001303274 47 Hs.387567 NM_001096 ENSG00000131473 ACLY ACL|ATPCL|CLATP ATP citrate lyase protein-coding 231.833-5 chr15 27659561 27659979 + 0.666667 NA Intergenic Intergenic 439545 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 180.5-47 chr9 124406703 124407062 + 0.666667 NA intron (NM_002799, intron 4 of 7) AluSz6|SINE|Alu 8560 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 272-24 chr3 173195606 173196160 + 0.666667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -54648 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 218.5 chr1 23025192 23025558 + 0.666667 NA intron (NM_015013, intron 1 of 18) AluSq10|SINE|Alu 5907 NM_015013 23028 Hs.591518 NM_015013 ENSG00000004487 KDM1A AOF2|BHC110|CPRF|KDM1|LSD1 lysine demethylase 1A protein-coding 203.667-43 chr6 135441691 135441997 + 0.666667 NA intron (NM_017651, intron 13 of 27) intron (NM_017651, intron 13 of 27) 55896 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 199-20 chr19 29750294 29750737 + 0.666667 NA Intergenic Intergenic -34726 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 236.833-9 chr14 75641613 75642221 + 0.666667 NA intron (NM_017791, intron 9 of 9) intron (NM_017791, intron 9 of 9) 18959 NM_007176 11161 Hs.15106 NM_007176 ENSG00000133935 ERG28 C14orf1|NET51 ergosterol biosynthesis 28 homolog protein-coding 204.833-10 chr17 63143848 63144194 + 0.666667 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 177786 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 227.167-2 chr10 92143952 92144538 + 0.666667 NA intron (NM_001178137, intron 5 of 9) intron (NM_001178137, intron 5 of 9) 99034 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 187.333-40 chr7 41762048 41762420 + 0.666667 NA intron (NR_027118, intron 2 of 3) MSTA|LTR|ERVL-MaLR -59144 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 217-17 chr2 170777112 170777491 + 0.666667 NA intron (NR_110644, intron 3 of 4) intron (NR_110644, intron 3 of 4) -6490 NM_001289947 285141 Hs.443729 NM_001289947 ENSG00000204334 ERICH2 - glutamate rich 2 protein-coding 204.333-12 chr12 49624017 49624457 + 0.666667 NA intron (NM_012272, intron 1 of 24) MIR3|SINE|MIR 617 NM_012272 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 194.333-7 chr1 181370374 181370723 + 0.666667 NA Intergenic L1PA15|LINE|L1 -112969 NM_001205294 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 216-22 chr18 32096013 32096440 + 0.666667 NA intron (NM_198128, intron 1 of 4) intron (NM_198128, intron 1 of 4) 3620 NM_198128 51444 Hs.302408 NM_016271 ENSG00000134758 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138 protein-coding 182.667-19 chr16 28822605 28822889 + 0.666667 NA promoter-TSS (NM_145714) promoter-TSS (NM_145714) -301 NM_001308230 11273 Hs.460499 NM_007245 ENSG00000168488 ATXN2L A2D|A2LG|A2LP|A2RP ataxin 2 like protein-coding 167.333-9 chr11 8688694 8688997 + 0.666667 NA 3' UTR (NM_000990, exon 5 of 5) 3' UTR (NM_000990, exon 5 of 5) 3406 NR_002977 677826 Hs.745552 NR_002977 ENSG00000212607 SNORA3B ACA3-2|SNORA45|SNORA45B small nucleolar RNA, H/ACA box 3B snoRNA 171-44 chr3 130356582 130356881 + 0.666667 NA intron (NM_001278298, intron 1 of 40) intron (NM_001278298, intron 1 of 40) 11215 NR_022012 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 200.667-26 chr2 96264687 96265308 + 0.666667 NA intron (NM_017849, intron 2 of 3) intron (NM_017849, intron 2 of 3) 1000 NM_001193304 55654 Hs.164303 NM_017849 ENSG00000135956 TMEM127 - transmembrane protein 127 protein-coding 223.333-37 chr5 108028799 108029198 + 0.666667 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 353100 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 204.333-36 chr4 132332726 132333165 + 0.666667 NA Intergenic Intergenic -258144 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 169.333-48 chr4 85527512 85527881 + 0.666667 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 52546 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 289.333-10 chr12 11513813 11514407 + 0.666667 NA Intergenic Intergenic -27432 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 215.833-19 chr5 108169458 108169977 + 0.666667 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 212381 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 181.5-14 chr13 45681444 45681730 + 0.666667 NA intron (NR_125786, intron 3 of 3) intron (NR_125786, intron 3 of 3) 19597 NR_125786 103752581 NR_125786 LINC01055 - long intergenic non-protein coding RNA 1055 ncRNA 227.333-7 chr11 36503602 36504038 + 0.666667 NA intron (NM_145803, intron 1 of 7) intron (NM_145803, intron 1 of 7) 6452 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 184.333-30 chr5 80741794 80742283 + 0.666667 NA intron (NM_002439, intron 11 of 23) AluSx1|SINE|Alu -87055 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 225.5-6 chr11 100869877 100870386 + 0.666667 NA intron (NM_001367945, intron 6 of 25) intron (NM_001367945, intron 6 of 25) -64143 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 194.167-35 chr8 119331473 119332355 + 0.666667 NA Intergenic MER21B|LTR|ERVL 6743 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 258.5-7 chr12 17793017 17793710 + 0.666667 NA Intergenic Intergenic 120064 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 236.667 chr1 95861355 95861948 + 0.666667 NA Intergenic L1ME1|LINE|L1 -130417 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 171.667-18 chr14 73986466 73986819 + 0.666667 NA intron (NM_001249, intron 5 of 15) intron (NM_001249, intron 5 of 15) 32646 NM_001249 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 225.667-34 chr6 43229251 43229804 + 0.666667 NA promoter-TSS (NM_006443) promoter-TSS (NM_006443) -46 NM_006443 10591 Hs.109752 NM_006443 ENSG00000112667 DNPH1 C6orf108|RCL|dJ330M21.3 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding 170-4 chr10 78013166 78013552 + 0.666667 NA intron (NM_007055, intron 11 of 30) intron (NM_007055, intron 11 of 30) 16156 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 199.667-17 chr17 68063677 68064223 + 0.666667 NA Intergenic AluSx3|SINE|Alu 27990 NM_001320611 3838 Hs.594238 NM_002266 ENSG00000182481 KPNA2 IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha karyopherin subunit alpha 2 protein-coding 190.167-7 chr17 82774754 82775348 + 0.666667 NA intron (NM_005993, intron 6 of 38) intron (NM_005993, intron 6 of 38) 22986 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 225.333-13 chr11 110965191 110965579 + 0.666667 NA Intergenic Intergenic 131933 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 256.667-5 chr11 36851246 36851768 + 0.666667 NA Intergenic Intergenic -253228 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 189.333-16 chr14 58748903 58749271 + 0.666667 NA Intergenic Intergenic -79201 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 175.5-26 chr17 61620515 61621039 + 0.666667 NA Intergenic L1MC3|LINE|L1 -29558 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 197.167-3 chr10 49504151 49504745 + 0.666667 NA intron (NM_001346440, intron 6 of 20) intron (NM_001346440, intron 6 of 20) 19833 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 196.333-38 chr6 24105566 24105913 + 0.666667 NA Intergenic Intergenic -20476 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 185.5-14 chr12 67630780 67631347 + 0.666667 NA Intergenic Charlie8|DNA|hAT-Charlie -17682 NM_006482 8445 Hs.173135 NM_003583 ENSG00000127334 DYRK2 - dual specificity tyrosine phosphorylation regulated kinase 2 protein-coding 204.333-35 chr4 85819098 85819473 + 0.666667 NA intron (NM_001346093, intron 1 of 6) intron (NM_001346093, intron 1 of 6) -8652 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 262.667-14 chr12 47271596 47272052 + 0.666667 NA Intergenic Intergenic 35575 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 164.667-50 chr6 63716416 63716779 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 70071 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 165-16 chr13 65239918 65240242 + 0.666667 NA Intergenic L1MA8|LINE|L1 -625967 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 211-19 chr17 82416703 82417257 + 0.666667 NA intron (NR_033265, intron 1 of 9) intron (NR_033265, intron 1 of 9) -1367 NM_001369487 284004 Hs.744207 NM_173620 ENSG00000169660 HEXD HEXDC hexosaminidase D protein-coding 188.167-22 chr3 79846195 79846526 + 0.666667 NA Intergenic L1PB4|LINE|L1 -78362 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 177.333-39 chr8 119932764 119933318 + 0.666667 NA intron (NM_022783, intron 3 of 8) L2a|LINE|L2 59319 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 195.667-6 chr10 101977365 101977914 + 0.666667 NA intron (NM_024541, intron 19 of 25) MSTC|LTR|ERVL-MaLR 78534 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 163.333-29 chr2 72145584 72145885 + 0.666667 NA intron (NM_019885, intron 1 of 5) CpG 2128 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 170.167-13 chr14 50159440 50159951 + 0.666667 NA exon (NM_006939, exon 10 of 23) exon (NM_006939, exon 10 of 23) -43123 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 170-27 chr19 1179728 1180023 + 0.666667 NA Intergenic AluJb|SINE|Alu -5607 NM_014963 22904 Hs.408708 NM_014963 ENSG00000064932 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 protein-coding 191-25 chr2 41199806 41200154 + 0.666667 NA Intergenic Intergenic -677575 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 193.333-8 chr10 102603021 102603377 + 0.666667 NA intron (NM_001178133, intron 8 of 10) AluJo|SINE|Alu -41296 NR_144321 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 189-41 chr4 69593023 69593475 + 0.666667 NA intron (NM_001105677, intron 5 of 5) intron (NM_001105677, intron 5 of 5) 46393 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 218-14 chr13 57263143 57263470 + 0.666667 NA Intergenic LTR56|LTR|ERV1 96109 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 174.5-27 chr5 170207868 170208356 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -8971 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 222-3 chr1 117929174 117929595 + 0.666667 NA promoter-TSS (NM_006784) promoter-TSS (NM_006784) 237 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 165.667-19 chr14 87695278 87695642 + 0.666667 NA Intergenic Intergenic -40166 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 184.167-32 chr6 15893720 15894129 + 0.666667 NA Intergenic Intergenic -230866 NM_183040 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 200.5-17 chr16 2592369 2592736 + 0.666667 NA intron (NM_001261816, intron 11 of 11) AluSx1|SINE|Alu -10832 NR_015441 652276 Hs.720448 NR_015441 ENSG00000215154 LOC652276 - potassium channel tetramerization domain containing 5 pseudogene pseudo 312-13 chr18 66559160 66559833 + 0.666667 NA intron (NM_001271028, intron 3 of 9) L1M5|LINE|L1 44594 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 203.667-9 chr10 88963561 88963911 + 0.666667 NA intron (NM_001320855, intron 1 of 8) MARNA|DNA|TcMar-Mariner -10963 NM_001613 59 Hs.500483 NM_001613 ENSG00000107796 ACTA2 ACTSA actin alpha 2, smooth muscle protein-coding 194.333-8 chr10 31113863 31114329 + 0.666667 NA Intergenic Intergenic -73787 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 271.333-25 chr6 51857327 51857819 + 0.666667 NA intron (NM_138694, intron 48 of 66) MIR|SINE|MIR 230040 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 213.333-36 chr6 55075516 55076127 + 0.666667 NA Intergenic L1MC1|LINE|L1 -30639 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 185.333-33 chr3 38465755 38466170 + 0.666667 NA intron (NM_001106, intron 1 of 10) L1MEg|LINE|L1 -11142 NR_028389 100128640 Hs.570596 NR_028389 ENSG00000229589 ACVR2B-AS1 - ACVR2B antisense RNA 1 ncRNA 175.167-46 chr9 129545904 129546398 + 0.666667 NA Intergenic Intergenic 57491 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 178.667-2 chr1 159947554 159948058 + 0.666667 NA Intergenic Intergenic -2193 NM_001135050 57549 Hs.591472 NM_020789 ENSG00000085552 IGSF9 FP18798|IGSF9A|Nrt1 immunoglobulin superfamily member 9 protein-coding 185.833-7 chr14 57268889 57269195 + 0.666667 NA promoter-TSS (NM_018229) promoter-TSS (NM_018229) 71 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 190.5-50 chr7 120691081 120691644 + 0.666667 NA intron (NM_012281, intron 1 of 5) L2a|LINE|L2 166782 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 197.833-30 chr6 26227541 26227893 + 0.666667 NA Intergenic Intergenic 2562 NM_003532 8353 Hs.443021 NM_003532 ENSG00000274750 HIST1H3E H3.1|H3/d|H3FD histone cluster 1 H3 family member e protein-coding 279.167-4 chr14 72915865 72916768 + 0.666667 NA Intergenic AluSz6|SINE|Alu -10148 NM_001163509 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 216.5-39 chr6 44120726 44121133 + 0.666667 NA intron (NM_001318767, intron 1 of 2) intron (NM_001318767, intron 1 of 2) 5338 NM_001318770 64928 Hs.311190 NM_032111 ENSG00000180992 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 184.667-30 chr2 108587846 108588189 + 0.666667 NA promoter-TSS (NM_004987) promoter-TSS (NM_004987) -289 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 167-40 chr7 93458904 93459209 + 0.666667 NA intron (NM_001164738, intron 7 of 12) intron (NM_001164738, intron 7 of 12) 23799 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 239.667-3 chr1 91063878 91064424 + 0.666667 NA Intergenic Intergenic -41896 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 252-20 chr14 75069345 75069795 + 0.666667 NA promoter-TSS (NM_001302617) promoter-TSS (NM_001302617) -71 NM_024643 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 245.167-19 chr8 131815175 131815609 + 0.666667 NA Intergenic L2c|LINE|L2 -88701 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 202.333-3 chr1 80525296 80525819 + 0.666667 NA Intergenic Intergenic -10198 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 169-14 chr12 127809849 127810296 + 0.666667 NA Intergenic Intergenic -71545 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 202.667-35 chr6 73426257 73426621 + 0.666667 NA intron (NM_138441, intron 4 of 4) intron (NM_138441, intron 4 of 4) 25858 NM_138441 115004 Hs.658405 NM_138441 ENSG00000164430 CGAS C6orf150|MB21D1|h-cGAS cyclic GMP-AMP synthase protein-coding 189.5-10 chr14 33120500 33120810 + 0.666667 NA intron (NM_001164749, intron 2 of 11) MER5A1|DNA|hAT-Charlie 181776 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 171.5-13 chr12 62259718 62260121 + 0.666667 NA promoter-TSS (NR_106740) promoter-TSS (NR_106740) -421 NM_001351162 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 212.667 chr1 221302606 221303011 + 0.666667 NA Intergenic Intergenic 33488 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 213.833-14 chr3 164692129 164692696 + 0.666667 NA Intergenic MLT1D|LTR|ERVL-MaLR 139068 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 175.167-25 chr2 223799188 223799613 + 0.666667 NA intron (NR_110905, intron 1 of 5) MLT1C|LTR|ERVL-MaLR 38182 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 207.333-9 chr11 106705545 106706035 + 0.666667 NA intron (NM_001256424, intron 8 of 8) AluSc8|SINE|Alu 312686 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 193.833-4 chr12 45861337 45861709 + 0.666667 NA intron (NM_152641, intron 16 of 20) intron (NM_152641, intron 16 of 20) 129051 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 188-13 chr14 51846196 51846600 + 0.666667 NA Intergenic Intergenic -14214 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 180.333-29 chr2 109726416 109726887 + 0.666667 NA Intergenic Intergenic -66107 NM_001037866 729540 Hs.535589 NM_001037866 ENSG00000183054 RGPD6 RGP6|RGPD7|RanBP2L1|RanBP2L2 RANBP2 like and GRIP domain containing 6 protein-coding 258.333-21 chr8 52466606 52467099 + 0.666667 NA Intergenic Intergenic -56973 NM_001352838 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 172.667-57 chrX 123423036 123423320 + 0.666667 NA intron (NM_007325, intron 11 of 15) intron (NM_007325, intron 11 of 15) 238900 NM_001256743 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 180-38 chr2 153518179 153518545 + 0.666667 NA Intergenic L2c|LINE|L2 -39600 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 192-44 chr8 9912672 9913036 + 0.666667 NA Intergenic Intergenic -9382 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 263.333-29 chr8 129092031 129092796 + 0.666667 NA Intergenic Intergenic -126412 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 203.667-44 chr7 9009132 9009523 + 0.666667 NA Intergenic L1MB7|LINE|L1 575718 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 235.333-25 chr5 177385330 177385832 + 0.666667 NA intron (NM_003052, intron 1 of 12) intron (NM_003052, intron 1 of 12) 1147 NM_003052 6569 Hs.936 NM_003052 ENSG00000131183 SLC34A1 FRTS2|HCINF2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2 solute carrier family 34 member 1 protein-coding 227.333-17 chr18 40159762 40160202 + 0.666667 NA Intergenic Intergenic 93696 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 219-16 chr2 15313020 15314000 + 0.666667 NA intron (NR_052013, intron 38 of 50) intron (NR_052013, intron 38 of 50) 247824 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 163.667-59 chr9 78115153 78115515 + 0.666667 NA Intergenic Intergenic -83523 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 240.667-8 chr11 98261125 98261583 + 0.666667 NA Intergenic L1MB1|LINE|L1 -759595 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 222.333-10 chr15 80138192 80138820 + 0.666667 NA TTS (NM_001242912) TTS (NM_001242912) -14493 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 190.667-18 chr12 127316307 127316652 + 0.666667 NA Intergenic L1MD2|LINE|L1 23593 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 239.167-26 chr3 197589509 197590032 + 0.666667 NA Intergenic AluJo|SINE|Alu -16447 NM_203315 622 Hs.274539 NM_004051 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase 1 protein-coding 326.667-5 chr22 27405681 27406769 + 0.666667 NA Intergenic MIR3|SINE|MIR 95574 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 203.167-33 chr7 157663414 157663924 + 0.666667 NA intron (NM_130843, intron 12 of 21) intron (NM_130843, intron 12 of 21) -89247 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 191.5-35 chr3 89384816 89385494 + 0.666667 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 277534 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 201.5-19 chr19 43793794 43794366 + 0.666667 NA Intergenic Intergenic 5949 NM_001288763 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 229.333-2 chr1 161900683 161901239 + 0.666667 NA intron (NM_007348, intron 14 of 15) intron (NM_007348, intron 14 of 15) 123504 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 166.333-46 chr5 77139975 77140414 + 0.666667 NA intron (NR_024398, intron 3 of 3) L1MEd|LINE|L1 -40110 NM_001349750 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 192.333-25 chr19 3240969 3241412 + 0.666667 NA intron (NR_033342, intron 1 of 12) AluSc5|SINE|Alu 15912 NR_033342 60680 Hs.655747 NM_021938 ENSG00000161082 CELF5 BRUNOL-5|BRUNOL5|CELF-5 CUGBP Elav-like family member 5 protein-coding 183.667-28 chr2 82265541 82266034 + 0.666667 NA Intergenic GA-rich|Low_complexity|Low_complexity -591016 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 227.333-13 chr15 80950622 80951164 + 0.666667 NA 3' UTR (NM_001293298, exon 30 of 30) 3' UTR (NM_001293298, exon 30 of 30) 38926 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 249.666-5 chr16 11356910 11357583 + 0.666667 NA Intergenic Intergenic 11787 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 218.667-11 chr16 5834289 5834784 + 0.666667 NA Intergenic L1PB3|LINE|L1 -184488 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 278.833 chr1 37406444 37407135 + 0.666667 NA Intergenic Intergenic 67654 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 181.167-11 chr11 128161245 128161614 + 0.666667 NA Intergenic Intergenic -47337 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 164.333-34 chr3 87253074 87253530 + 0.666667 NA intron (NM_014043, intron 4 of 5) intron (NM_014043, intron 4 of 5) 23282 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 210.833-14 chr18 62113336 62113932 + 0.666667 NA intron (NM_176787, intron 15 of 30) intron (NM_176787, intron 15 of 30) 73422 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 166.833-7 chr12 56688000 56688478 + 0.666667 NA promoter-TSS (NM_006601) promoter-TSS (NM_006601) 45 NM_001282603 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding 204.333-38 chr5 8895139 8895564 + 0.666667 NA Intergenic Intergenic 55619 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 190.5-38 chr5 31583927 31584314 + 0.666667 NA Intergenic Intergenic 51819 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 229.667-29 chr5 38909089 38909708 + 0.666667 NA intron (NM_003999, intron 9 of 17) L1PA16|LINE|L1 63386 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 228.333-17 chr2 196134267 196134689 + 0.666667 NA 3' UTR (NM_004226, exon 8 of 8) 3' UTR (NM_004226, exon 8 of 8) 37100 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 226.833-8 chr12 56227218 56227601 + 0.666667 NA intron (NM_024068, intron 6 of 6) intron (NM_024068, intron 6 of 6) -2642 NM_173596 283375 Hs.591018 NM_173596 ENSG00000139540 SLC39A5 LZT-Hs7|MYP24|ZIP5 solute carrier family 39 member 5 protein-coding 205.667-21 chr2 219552379 219552957 + 0.666667 NA exon (NM_015311, exon 18 of 21) exon (NM_015311, exon 18 of 21) -3521 NR_036082 100423039 NR_036082 ENSG00000265252 MIR3132 - microRNA 3132 ncRNA 229.5-36 chr6 63425906 63426342 + 0.666667 NA Intergenic Intergenic -106141 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 257.5-5 chr10 61617269 61618053 + 0.666667 NA Intergenic Intergenic -45268 NM_001366909 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 214.833 chr1 38272616 38273022 + 0.666667 NA Intergenic Intergenic -58052 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 169-23 chr17 75638005 75638372 + 0.666667 NA non-coding (NR_028439, exon 1 of 2) non-coding (NR_028439, exon 1 of 2) 1593 NR_028439 643008 Hs.528605 NM_001162995 ENSG00000204323 SMIM5 C17orf109|PP12104 small integral membrane protein 5 protein-coding 218.833-12 chr18 45446808 45447348 + 0.666667 NA intron (NR_110899, intron 7 of 7) intron (NR_110899, intron 7 of 7) 59958 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 232-8 chr11 10830496 10831068 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR 21485 NR_120540 101928053 Hs.637773 NR_120540 ENSG00000246308 LOC101928053 - uncharacterized LOC101928053 ncRNA 189.667-2 chr1 157892715 157893132 + 0.666667 NA Intergenic L2a|LINE|L2 -33044 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 223.667-9 chr10 123270871 123271479 + 0.666667 NA Intergenic Intergenic 116773 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 189-14 chr11 108813006 108813434 + 0.666667 NA intron (NM_004398, intron 13 of 17) L1ME4b|LINE|L1 148151 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 180.833-22 chr7 7509534 7510016 + 0.666667 NA intron (NM_001037763, intron 9 of 34) (TATTC)n|Simple_repeat|Simple_repeat 26098 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 166.333-6 chr1 172733459 172733834 + 0.666667 NA Intergenic L1MEf|LINE|L1 74543 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 197.833-14 chr15 49875365 49875960 + 0.666667 NA intron (NR_073597, intron 24 of 26) FLAM_A|SINE|Alu 237717 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 200.333-13 chr13 113816725 113817152 + 0.666667 NA TTS (NM_182614) TTS (NM_182614) 1328 NR_044995 650669 Hs.369201 NM_001039799 GAS6-AS1 - GAS6 antisense RNA 1 ncRNA 213.667-28 chr21 29310254 29310618 + 0.666667 NA intron (NR_027655, intron 1 of 7) L2|LINE|L2 5232 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 177-42 chr8 55901791 55902138 + 0.666667 NA TTS (NR_145767) TTS (NR_145767) 891 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 206.167-22 chr8 66503346 66503844 + 0.666667 NA intron (NM_152765, intron 2 of 5) intron (NM_152765, intron 2 of 5) 10029 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 264.5-15 chr20 53818641 53819075 + 0.666667 NA Intergenic L1M1|LINE|L1 56851 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 165.833-15 chr16 55021713 55022038 + 0.666667 NA Intergenic L1PB2|LINE|L1 90676 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 220.167-31 chr9 93961738 93962243 + 0.666667 NA Intergenic MIR3|SINE|MIR 6156 NR_144455 101928040 Hs.375820 NR_144455 ENSG00000235601 BARX1-DT BARX1-AS1 BARX1 divergent transcript ncRNA 172-37 chr4 79513192 79513591 + 0.666667 NA intron (NR_038826, intron 2 of 3) intron (NR_038826, intron 2 of 3) 20798 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 234.667-13 chr15 41332204 41332698 + 0.666667 NA promoter-TSS (NM_001243142) promoter-TSS (NM_001243142) 140 NM_007280 11339 Hs.661645 NM_007280 ENSG00000104147 OIP5 5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta Opa interacting protein 5 protein-coding 193.667-45 chr5 130871989 130872382 + 0.666667 NA Intergenic L1M3d|LINE|L1 293071 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 164.333-44 chr6 75832198 75832456 + 0.666667 NA intron (NM_001300899, intron 5 of 32) intron (NM_001300899, intron 5 of 32) 83088 NM_001368139 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 233-12 chr2 115249912 115250599 + 0.666667 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -58982 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 163.167-20 chr19 20111850 20112414 + 0.666667 NA intron (NM_007138, intron 3 of 3) AluSg|SINE|Alu 34132 NM_007138 7643 Hs.55304 NM_007138 ENSG00000213988 ZNF90 HTF9 zinc finger protein 90 protein-coding 174.5-37 chr8 112818473 112818940 + 0.666667 NA intron (NM_001363185, intron 10 of 66) MER115|DNA|hAT-Tip100 175213 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 189-48 chr6 13402192 13402513 + 0.666667 NA intron (NM_018988, intron 1 of 1) L1MB8|LINE|L1 5785 NM_001242630 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 223.667-21 chr15 76063142 76063545 + 0.666667 NA intron (NM_152335, intron 1 of 10) MIRb|SINE|MIR 3358 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 210.834-3 chr12 25557449 25558239 + 0.666667 NA intron (NM_001352234, intron 1 of 8) Charlie22a|DNA|hAT-Charlie -4561 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 261-18 chr4 63257701 63258440 + 0.666667 NA Intergenic MER67B|LTR|ERV1 -1096305 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 301.333-6 chr14 67072129 67072899 + 0.666667 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -116926 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 172.333-31 chr2 65111197 65111700 + 0.666667 NA intron (NM_015543, intron 1 of 3) L1MD3|LINE|L1 18658 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 182-5 chr13 110850385 110850727 + 0.666667 NA Intergenic Intergenic 19752 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 163.167-28 chr3 24494812 24495199 + 0.666667 NA promoter-TSS (NM_001128177) promoter-TSS (NM_001128177) -155 NM_001354710 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 203.333-59 chr8 73991543 73991969 + 0.666667 NA intron (NM_001195797, intron 1 of 3) intron (NM_001195797, intron 1 of 3) 364 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 176-14 chr15 64427328 64427679 + 0.666667 NA intron (NM_001321924, intron 11 of 12) AluSz|SINE|Alu 39667 NM_016213 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 167.833-47 chr8 103429516 103429835 + 0.666667 NA intron (NM_015420, intron 5 of 10) intron (NM_015420, intron 5 of 10) 14289 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 200.167-11 chr14 71709184 71709573 + 0.666667 NA exon (NM_001354287, exon 17 of 24) exon (NM_001354287, exon 17 of 24) 123080 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 177.333-2 chr1 62014371 62014794 + 0.666667 NA intron (NM_001350145, intron 28 of 43) AluJb|SINE|Alu -64204 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 202-24 chr20 52132613 52133034 + 0.666667 NA intron (NM_199427, intron 5 of 8) L1M1|LINE|L1 -27339 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 226.333-17 chr5 2205328 2205755 + 0.666667 NA Intergenic Intergenic 106660 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 170.333-58 chrX 130245425 130245909 + 0.666667 NA intron (NM_017666, intron 3 of 18) intron (NM_017666, intron 3 of 18) 23232 NM_017666 55609 Hs.308418 NM_017666 ENSG00000056277 ZNF280C SUHW3|ZNF633|ZPET zinc finger protein 280C protein-coding 204-6 chr10 22962934 22963273 + 0.666667 NA intron (NM_001282745, intron 7 of 18) intron (NM_001282745, intron 7 of 18) 35050 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 167.667-52 chrX 154907264 154907628 + 0.666667 NA intron (NM_000132, intron 14 of 25) L1ME3B|LINE|L1 -19988 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 205.667-45 chr8 140118794 140119309 + 0.666667 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -18516 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 177.5-11 chr12 22857953 22858435 + 0.666667 NA Intergenic Intergenic 233023 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 231 chr1 10747298 10747893 + 0.666667 NA intron (NM_001079843, intron 2 of 20) intron (NM_001079843, intron 2 of 20) 49051 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 173.834-5 chr22 45808849 45809482 + 0.666667 NA intron (NM_013236, intron 10 of 11) intron (NM_013236, intron 10 of 11) 48641 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 312.833-7 chr8 121961064 121961613 + 0.666667 NA Intergenic L2a|LINE|L2 -319898 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 286.167-5 chr10 51009244 51009962 + 0.666667 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 18715 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 234.667-12 chr14 52927905 52928272 + 0.666667 NA intron (NM_006832, intron 2 of 14) intron (NM_006832, intron 2 of 14) 22962 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 200.667-56 chr8 121251533 121251930 + 0.666667 NA Intergenic L2c|LINE|L2 -387615 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 204.333-37 chr4 142351831 142352296 + 0.666667 NA intron (NM_001331040, intron 7 of 25) intron (NM_001331040, intron 7 of 25) 494472 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 204.167-13 chr22 46112214 46112760 + 0.666667 NA promoter-TSS (NR_029478) promoter-TSS (NR_029478) -262 NR_029478 406883 NR_029478 ENSG00000283990 MIRLET7A3 LET7A3|MIRNLET7A3|let-7a-3 microRNA let-7a-3 ncRNA 195.667-37 chr5 76101369 76101785 + 0.666667 NA intron (NM_014979, intron 1 of 12) L2a|LINE|L2 18194 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 271-5 chr10 82376560 82377010 + 0.666667 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -143865 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 261.167-12 chr18 27309521 27310163 + 0.666667 NA Intergenic L1MD2|LINE|L1 32814 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 228.333-30 chr7 157339679 157340324 + 0.666667 NA intron (NM_005494, intron 1 of 7) intron (NM_005494, intron 1 of 7) 2997 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 185.5-13 chr12 22912970 22913321 + 0.666667 NA Intergenic L3|LINE|CR1 -262491 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 198.667-11 chr14 52083943 52084385 + 0.666667 NA Intergenic Tigger1|DNA|TcMar-Tigger -15105 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 195.333-9 chr12 89209701 89210281 + 0.666667 NA Intergenic Intergenic 142510 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 201.333-45 chr6 129075497 129075950 + 0.666667 NA intron (NM_000426, intron 3 of 64) L2b|LINE|L2 192582 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 212.833-19 chr4 129000251 129000872 + 0.666667 NA intron (NM_144643, intron 6 of 20) Charlie1|DNA|hAT-Charlie 92978 NM_144643 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 226.5-7 chr10 58712871 58713513 + 0.666667 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) -1823 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 163.5-18 chr15 84750192 84750586 + 0.666667 NA intron (NM_014630, intron 1 of 10) L2a|LINE|L2 1797 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 171.167 chr1 27502760 27503136 + 0.666667 NA Intergenic AluSx1|SINE|Alu -12781 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 169.333-11 chr10 58531941 58532492 + 0.666667 NA intron (NM_001080512, intron 1 of 20) L1M4c|LINE|L1 19344 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 224.5-36 chr5 97142647 97143178 + 0.666667 NA promoter-TSS (NM_153234) promoter-TSS (NM_153234) -301 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 188-41 chr5 124816187 124816693 + 0.666667 NA Intergenic Penelope1_Vert|LINE|Penelope -71328 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 209.167-7 chr10 124992279 124992634 + 0.666667 NA intron (NM_001290214, intron 10 of 10) intron (NM_001290214, intron 10 of 10) 13562 NM_001363508 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 235.5-7 chr15 62664004 62664486 + 0.666667 NA intron (NM_015059, intron 6 of 55) L1ME3Cz|LINE|L1 16934 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 226.5-18 chr16 59137628 59138067 + 0.666667 NA Intergenic L1MC2|LINE|L1 -403531 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 227.333-23 chr20 56229564 56230237 + 0.666667 NA Intergenic L1MB7|LINE|L1 -18832 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 207.667 chr1 50544168 50544609 + 0.666667 NA intron (NM_007051, intron 13 of 18) MER5A|DNA|hAT-Charlie -120945 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 228.667-21 chr2 86623593 86623964 + 0.666667 NA promoter-TSS (NM_001198951) promoter-TSS (NM_001198951) 87 NM_001198952 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 274.333-8 chr12 39398683 39399471 + 0.666667 NA intron (NM_001173464, intron 1 of 37) AluJb|SINE|Alu 44043 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 190.167-14 chr22 49534871 49535214 + 0.666667 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 8424 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 177.667-8 chr12 51284213 51284525 + 0.666667 NA intron (NM_001364779, intron 12 of 12) Tigger3b|DNA|TcMar-Tigger -13954 NM_001031628 57228 Hs.652389 NM_001031628 ENSG00000170545 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 207.167-14 chr3 5948619 5948940 + 0.666667 NA Intergenic Intergenic -698524 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 202.167 chr1 81877512 81877833 + 0.666667 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 75219 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 182.5-28 chr5 11970233 11970592 + 0.666667 NA Intergenic L1MEd|LINE|L1 -65966 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 212-27 chr20 49933702 49934257 + 0.666667 NA Intergenic L1M4|LINE|L1 -2418 NM_018683 55905 Hs.144949 NM_018683 ENSG00000124226 RNF114 PSORS12|ZNF313 ring finger protein 114 protein-coding 169.333-6 chr1 208732953 208733531 + 0.666667 NA TTS (NR_146914) TTS (NR_146914) 4554 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 190.5-25 chr2 155994715 155995287 + 0.666667 NA Intergenic MLT1I|LTR|ERVL-MaLR 259930 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 208.167-4 chr1 65236331 65236685 + 0.666667 NA Intergenic L1MC4|LINE|L1 -28186 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 174-5 chr10 77718509 77718997 + 0.666667 NA Intergenic AluSq|SINE|Alu -80945 NM_001271522 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 176.667-9 chr11 76636271 76636753 + 0.666667 NA Intergenic Intergenic 33426 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 210.833-23 chr5 14876560 14877032 + 0.666667 NA Intergenic L1MC5a|LINE|L1 -5018 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 198.833-12 chr14 77671796 77672199 + 0.666667 NA TTS (NM_006020) TTS (NM_006020) 36026 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB homolog 1, histone H2A dioxygenase protein-coding 168.333-61 chr7 120550575 120551076 + 0.666667 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 277650 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 213.833-9 chr17 16285688 16286039 + 0.666667 NA intron (NM_004278, intron 2 of 6) intron (NM_004278, intron 2 of 6) 3849 NR_031698 100302124 NR_031698 ENSG00000221355 MIR1288 MIRN1288|hsa-mir-1288 microRNA 1288 ncRNA 247.5-42 chr7 21226072 21226667 + 0.666667 NA Intergenic Intergenic -201714 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 212.667-33 chr3 98813926 98814379 + 0.666667 NA intron (NM_080927, intron 9 of 15) intron (NM_080927, intron 9 of 15) 50845 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 203.167-34 chr8 103926035 103926376 + 0.666667 NA intron (NR_145711, intron 8 of 21) intron (NR_145711, intron 8 of 21) 106985 NM_001348507 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 222.167-17 chr18 12947923 12948371 + 0.666667 NA exon (NM_001013437, exon 1 of 9) exon (NM_001013437, exon 1 of 9) 136 NM_001013437 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 239.667-22 chr19 17464927 17465545 + 0.666667 NA Intergenic Intergenic -4310 NM_138454 115861 Hs.661836 NM_138454 ENSG00000171773 NXNL1 RDCVF|TXNL6 nucleoredoxin like 1 protein-coding 229.667-23 chr3 52941194 52941774 + 0.666667 NA intron (NM_016329, intron 4 of 20) AluSx1|SINE|Alu -43936 NM_001198974 100526772 NM_001198974 ENSG00000248592 STIMATE-MUSTN1 TMEM110-MUSTN1 STIMATE-MUSTN1 readthrough protein-coding 231.667-35 chr9 35658912 35659451 + 0.666667 NA TTS (NM_032818) TTS (NM_032818) 889 NM_174923 203260 Hs.745107 NM_174923 ENSG00000159884 CCDC107 PSEC0222 coiled-coil domain containing 107 protein-coding 183 chr1 85581405 85581754 + 0.666667 NA intron (NM_001554, intron 2 of 4) intron (NM_001554, intron 2 of 4) 818 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 182-28 chr20 61436920 61437409 + 0.666667 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -62257 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 170.833 chr1 63277700 63278211 + 0.666667 NA intron (NR_038252, intron 3 of 11) intron (NR_038252, intron 3 of 11) 39302 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 194-20 chr18 65510646 65511267 + 0.666667 NA Intergenic L1M4|LINE|L1 -239296 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 191.667-22 chr2 15465411 15465790 + 0.666667 NA intron (NR_052013, intron 19 of 50) intron (NR_052013, intron 19 of 50) 95734 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 172.5-27 chr2 148180356 148180672 + 0.666667 NA intron (NM_018328, intron 3 of 14) intron (NM_018328, intron 3 of 14) -158910 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 198.333-47 chr9 76151857 76152186 + 0.666667 NA intron (NM_006200, intron 10 of 20) intron (NM_006200, intron 10 of 20) 242405 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 209.333-13 chr11 12035900 12036297 + 0.666667 NA intron (NR_135109, intron 1 of 1) L1PA15|LINE|L1 5223 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 226.333 chr1 244958250 244958620 + 0.666667 NA Intergenic Intergenic -11434 NM_032328 84288 Hs.134857 NM_032328 ENSG00000203666 EFCAB2 CFAP200|DRC8 EF-hand calcium binding domain 2 protein-coding 172.333-27 chr18 63367942 63368300 + 0.666667 NA promoter-TSS (NM_002035) promoter-TSS (NM_002035) -915 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 167.833-8 chr12 30168482 30168954 + 0.666667 NA Intergenic Intergenic -383959 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 189.167-27 chr3 127980786 127981236 + 0.666667 NA intron (NM_001370224, intron 5 of 6) L1MC5a|LINE|L1 65779 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 197-24 chr4 77938721 77939016 + 0.666667 NA intron (NM_020236, intron 7 of 8) MER102c|DNA|hAT-Charlie 76038 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 180.667 chr1 32399277 32399586 + 0.666667 NA Intergenic AluJo|SINE|Alu -4990 NM_001300958 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 207.333-22 chr2 183501028 183501538 + 0.666667 NA Intergenic L1M3f|LINE|L1 376840 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 175.667-52 chr8 74721379 74721708 + 0.666667 NA intron (NR_033830, intron 4 of 5) MLT1J|LTR|ERVL-MaLR 15850 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 211.667-12 chr16 49876610 49877118 + 0.666667 NA Intergenic CpG -18945 NM_001271620 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 218.167-27 chr8 140290406 140290958 + 0.666667 NA intron (NM_001160372, intron 12 of 22) intron (NM_001160372, intron 12 of 22) 167062 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 235.333-10 chr2 165511872 165512574 + 0.666667 NA intron (NM_001172173, intron 2 of 6) intron (NM_001172173, intron 2 of 6) 42525 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 256-3 chr1 163181779 163182452 + 0.666667 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) 20440 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 182.833-23 chr2 222530017 222530342 + 0.666667 NA intron (NM_152386, intron 4 of 4) Tigger1|DNA|TcMar-Tigger 105636 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 260.167-14 chr2 140863985 140864512 + 0.666667 NA intron (NM_018557, intron 27 of 90) intron (NM_018557, intron 27 of 90) -277563 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 198.5-42 chr8 15865306 15865624 + 0.666667 NA Intergenic L1MA6|LINE|L1 320807 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 167.833-28 chr2 187501311 187501750 + 0.666667 NA intron (NM_001318941, intron 3 of 7) intron (NM_001318941, intron 3 of 7) 52905 NM_001329239 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 203.333-45 chr4 100306555 100307040 + 0.666667 NA Intergenic Intergenic 88450 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 245.833-6 chr10 121909945 121910350 + 0.666667 NA intron (NM_001001976, intron 5 of 11) intron (NM_001001976, intron 5 of 11) 17884 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 181-31 chr4 29055190 29055576 + 0.666667 NA Intergenic Intergenic 58599 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 204.167-4 chr11 88822144 88822866 + 0.666667 NA intron (NM_001143831, intron 2 of 8) L2c|LINE|L2 225567 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 262.333-5 chr11 44286420 44287073 + 0.666667 NA intron (NM_021926, intron 1 of 3) MIRc|SINE|MIR 23393 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 199-17 chr17 59771008 59771374 + 0.666667 NA intron (NM_001329400, intron 4 of 9) AluSx3|SINE|Alu 63537 NM_001329397 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 188-3 chr1 95450683 95451160 + 0.666667 NA Intergenic Intergenic -23816 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 191.667-26 chr2 67278228 67278686 + 0.666667 NA intron (NR_110564, intron 3 of 4) intron (NR_110564, intron 3 of 4) -63138 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 182.667-41 chr5 41561348 41561700 + 0.666667 NA Intergenic Intergenic -50923 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 176.333-4 chr10 91766523 91766879 + 0.666667 NA Intergenic Intergenic 31495 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 209.667-23 chr22 38723820 38724465 + 0.666667 NA intron (NM_004286, intron 5 of 11) intron (NM_004286, intron 5 of 11) 18198 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 255-7 chr10 22290726 22291238 + 0.666667 NA Intergenic AluSx|SINE|Alu -25401 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 BMI1|PCGF4|RNF51 COMMD3-BMI1 readthrough protein-coding 205.333-42 chr6 86451571 86452176 + 0.666667 NA Intergenic Intergenic -485655 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 214.333-17 chr18 11570829 11571269 + 0.666667 NA Intergenic Intergenic -38509 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 184-55 chr8 142810783 142811084 + 0.666667 NA Intergenic Intergenic -23868 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 239.333-39 chr9 81414049 81414711 + 0.666667 NA Intergenic Intergenic 275155 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 197.167-24 chr2 124749786 124750275 + 0.666667 NA intron (NM_130773, intron 14 of 23) intron (NM_130773, intron 14 of 23) 724743 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 200-6 chr10 53171083 53171568 + 0.666667 NA Intergenic Intergenic -399625 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 209.5-6 chr11 102224767 102225302 + 0.666667 NA intron (NM_001130145, intron 7 of 8) L4_B_Mam|LINE|RTE-X -92450 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 215.333-29 chr20 52899699 52900178 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -72420 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 171.333-23 chr19 12838175 12838446 + 0.666667 NA promoter-TSS (NM_014975) promoter-TSS (NM_014975) -205 NM_014975 22983 Hs.227489 NM_014975 ENSG00000105613 MAST1 MCCCHCM|SAST microtubule associated serine/threonine kinase 1 protein-coding 206.333-3 chr1 23981614 23982016 + 0.666667 NA Intergenic Intergenic -1352 NR_034035 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 192.5-33 chr4 45129886 45130331 + 0.666667 NA Intergenic L1MC5|LINE|L1 -403474 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 176.333-17 chr2 230349244 230349671 + 0.666667 NA intron (NM_001352892, intron 2 of 18) L1M4|LINE|L1 22286 NM_001352893 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 190-27 chr19 17243953 17244346 + 0.666667 NA intron (NM_005234, intron 1 of 3) intron (NM_005234, intron 1 of 3) 1193 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 213.833-22 chr8 63024800 63025388 + 0.666667 NA intron (NM_003878, intron 5 of 8) intron (NM_003878, intron 5 of 8) 13712 NM_003878 8836 Hs.78619 NM_003878 ENSG00000137563 GGH GH gamma-glutamyl hydrolase protein-coding 184.5-14 chr11 105206835 105207188 + 0.666667 NA Intergenic MLT1K|LTR|ERVL-MaLR -67242 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 177.833-38 chr9 19509456 19509893 + 0.666667 NA 3' UTR (NM_001193288, exon 9 of 9) 3' UTR (NM_001193288, exon 9 of 9) 100665 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 195-18 chr16 2384575 2384902 + 0.666667 NA intron (NR_003574, intron 7 of 16) L1MB7|LINE|L1 43816 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 169.833-12 chr14 21542482 21542909 + 0.666667 NA Intergenic AluSx|SINE|Alu -5479 NR_111966 6297 Hs.416358 NM_005407 ENSG00000165821 SALL2 COLB|HSAL2|Sal-2|ZNF795|p150(Sal2) spalt like transcription factor 2 protein-coding 214.5-26 chr4 53275443 53275948 + 0.666667 NA intron (NM_152540, intron 3 of 8) L1ME1|LINE|L1 90366 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 172.833-28 chr6 83666226 83666582 + 0.666667 NA intron (NM_001242792, intron 2 of 28) intron (NM_001242792, intron 2 of 28) 42155 NM_001363677 9892 Hs.368046 NM_014841 ENSG00000065609 SNAP91 AP180|CALM synaptosome associated protein 91 protein-coding 191-38 chr4 153438712 153439131 + 0.666667 NA Intergenic Intergenic -27425 NM_015196 23240 Hs.732450 NM_015196 ENSG00000121210 TMEM131L KIAA0922 transmembrane 131 like protein-coding 200-25 chr2 184721525 184722187 + 0.666667 NA intron (NM_194250, intron 1 of 3) L1MA4A|LINE|L1 123327 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 228.667-5 chr12 571983 572343 + 0.666667 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 14323 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 196.167-16 chr15 81441030 81441575 + 0.666667 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -67089 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 196.333-12 chr14 28974588 28975095 + 0.666667 NA Intergenic Intergenic -189054 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 232.333-4 chr11 114684475 114684980 + 0.666667 NA intron (NM_182495, intron 2 of 5) intron (NM_182495, intron 2 of 5) 6200 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 249.667-3 chr10 26106001 26106483 + 0.666667 NA intron (NM_017433, intron 17 of 34) L1ME3G|LINE|L1 -110065 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 244.833-11 chr9 72852907 72853466 + 0.666667 NA Intergenic Intergenic 20923 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 272.667-8 chr11 18926447 18927044 + 0.666667 NA Intergenic L1PA8|LINE|L1 8257 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 175-51 chr6 103826706 103827107 + 0.666667 NA Intergenic AluJr|SINE|Alu 1032640 NM_001321083 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 187-23 chr20 3407177 3407548 + 0.666667 NA intron (NM_001009984, intron 1 of 36) CpG 300 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 205.667-24 chr20 36409136 36409606 + 0.666667 NA intron (NM_001365621, intron 2 of 12) L1PA8|LINE|L1 -52097 NM_001042486 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 249.167-12 chr2 150479462 150480144 + 0.666667 NA intron (NM_005168, intron 3 of 5) intron (NM_005168, intron 3 of 5) 7892 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 186.333-36 chr7 1474804 1475333 + 0.666667 NA intron (NM_001080453, intron 39 of 47) intron (NM_001080453, intron 39 of 47) -15598 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 183-39 chr5 152545796 152546295 + 0.666667 NA Intergenic Intergenic -140766 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 236.5-22 chr20 37526557 37526922 + 0.666667 NA intron (NM_001167820, intron 1 of 2) intron (NM_001167820, intron 1 of 2) 993 NM_001167821 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 244.167-3 chr1 104648401 104648903 + 0.666667 NA Intergenic Intergenic 575629 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 197.333-21 chr20 20083442 20083939 + 0.666667 NA intron (NM_015585, intron 6 of 26) intron (NM_015585, intron 6 of 26) 27044 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 178.667-6 chr10 103960913 103961394 + 0.666667 NA Intergenic Intergenic -5987 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 165.167-23 chr21 27488878 27489404 + 0.666667 NA Intergenic Intergenic -233238 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 172-49 chr7 94043295 94043760 + 0.666667 NA Intergenic Intergenic -39172 NM_001317739 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 180.167-26 chr9 81417267 81417615 + 0.666667 NA Intergenic Intergenic 272094 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 165-32 chr2 206839033 206839442 + 0.666667 NA Intergenic L1PREC2|LINE|L1 -55929 NR_036077 100422993 NR_036077 ENSG00000283469 MIR3130-1 MIR3130-3|mir-3130-1 microRNA 3130-1 ncRNA 199.333-28 chr2 43145405 43145913 + 0.666667 NA Intergenic Intergenic -43214 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 187.833-26 chr6 136280849 136281166 + 0.666667 NA intron (NM_001363659, intron 2 of 11) intron (NM_001363659, intron 2 of 11) 8839 NM_001077441 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 190.667-47 chr5 155601202 155601570 + 0.666667 NA Intergenic Intergenic 587631 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 175.333-2 chr1 150516306 150516763 + 0.666667 NA intron (NR_051960, intron 1 of 1) intron (NR_051960, intron 1 of 1) 777 NR_051960 100874054 Hs.576460 NR_051960 ENSG00000228126 FALEC FAL1|LINC00568|ncRNA-a1 focally amplified long non-coding RNA in epithelial cancer ncRNA 166-47 chr21 25734937 25735375 + 0.666667 NA 5' UTR (NM_001685, exon 1 of 4) intron (NM_001197297, intron 1 of 9) 184 NM_002040 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 166.833-12 chr19 17014323 17014673 + 0.666667 NA intron (NM_015692, intron 3 of 41) THE1B|LTR|ERVL-MaLR 12312 NM_015692 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 191.333-14 chr14 70983791 70984132 + 0.666667 NA intron (NM_001308160, intron 6 of 33) intron (NM_001308160, intron 6 of 33) 76502 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 163.167-11 chr13 51587308 51587647 + 0.666667 NA intron (NM_052950, intron 1 of 11) L2b|LINE|L2 3015 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 226.667-11 chr12 11546599 11547269 + 0.666667 NA Intergenic LTR9D|LTR|ERV1 -1096 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 214-29 chr2 61764200 61764683 + 0.666667 NA Intergenic CpG 89619 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 163.833-8 chr12 41461483 41462064 + 0.666667 NA intron (NM_013377, intron 1 of 7) L2a|LINE|L2 24034 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 177.167-31 chr8 89994957 89995347 + 0.666667 NA Intergenic LTR84b|LTR|ERVL -6200 NM_001330575 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 207.667-25 chr21 29916869 29917525 + 0.666667 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 22799 NM_001330993 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 233-13 chr2 172098530 172099220 + 0.666667 NA TTS (NM_004405) TTS (NM_004405) 4025 NM_004405 1746 Hs.419 NM_004405 ENSG00000115844 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 249.333-21 chr3 114402030 114402533 + 0.666667 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -18639 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 188.167-25 chr3 164853233 164853780 + 0.666667 NA Intergenic Intergenic -22026 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 178.333-21 chr2 159308165 159308585 + 0.666667 NA Intergenic L1ME2|LINE|L1 -21672 NM_001128212 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 221-27 chr4 42968349 42968837 + 0.666667 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 75327 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 239.333-20 chr22 21627826 21628385 + 0.666667 NA TTS (NR_163923) TTS (NR_163923) 1917 NR_163925 251-16 chr2 137134542 137135215 + 0.666667 NA intron (NM_001316349, intron 5 of 27) intron (NM_001316349, intron 5 of 27) 369333 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 228.333-18 chr20 14060210 14060708 + 0.666667 NA intron (NM_001351663, intron 2 of 17) L2|LINE|L2 64943 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 242.5-38 chr5 133171475 133171936 + 0.666667 NA Intergenic AluSz|SINE|Alu 119692 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 193.667-35 chr3 89791717 89792224 + 0.666667 NA Intergenic Intergenic 684349 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 224.833-6 chr11 39036294 39036734 + 0.666667 NA Intergenic Intergenic 387656 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 209-15 chr16 83351537 83351990 + 0.666667 NA intron (NM_001220489, intron 5 of 12) L1ME4b|LINE|L1 -156583 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 198.333-41 chr7 1207528 1207994 + 0.666667 NA Intergenic AluJb|SINE|Alu -25111 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 182.833-25 chr3 18373351 18373738 + 0.666667 NA intron (NM_001131010, intron 9 of 10) intron (NM_001131010, intron 9 of 10) 51795 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 172.5-57 chr8 120488096 120488545 + 0.666667 NA exon (NM_022045, exon 12 of 22) exon (NM_022045, exon 12 of 22) 42901 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 198.167-23 chr3 144276276 144276622 + 0.666667 NA Intergenic Intergenic 303368 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 234.333-2 chr1 84434930 84435415 + 0.666667 NA Intergenic L2|LINE|L2 26821 NM_058248 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 178.833-2 chr1 105322519 105322845 + 0.666667 NA Intergenic L1MA2|LINE|L1 296253 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 169.333-40 chr3 66317076 66317398 + 0.666667 NA intron (NR_028475, intron 5 of 9) L1PA10|LINE|L1 96234 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 184.333-21 chr2 18776523 18776875 + 0.666667 NA Intergenic Intergenic -187119 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 189.833-19 chr7 69145021 69145357 + 0.666667 NA Intergenic AluJo|SINE|Alu 452435 NR_148926 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 180.667-40 chr5 158085070 158085507 + 0.666667 NA Intergenic L1MA9|LINE|L1 -226143 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 200.167-4 chr1 189697298 189697665 + 0.666667 NA Intergenic AluSx|SINE|Alu 778529 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 172.833-16 chr20 18740475 18740746 + 0.666667 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) -41902 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 171.333-10 chr12 67120219 67120602 + 0.666667 NA Intergenic Intergenic -24126 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 192.5-9 chr11 106389050 106389586 + 0.666667 NA Intergenic LTR8B|LTR|ERV1 137911 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 255-19 chr2 50121396 50121878 + 0.666667 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -147434 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 201-27 chr3 34260752 34261175 + 0.666667 NA Intergenic Intergenic 462333 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 295.334-6 chr2 69859777 69860394 + 0.666667 NA intron (NM_178439, intron 9 of 13) AluJb|SINE|Alu 30425 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 183.333-56 chr6 11761606 11761909 + 0.666667 NA intron (NM_032744, intron 3 of 5) Charlie4z|DNA|hAT-Charlie 17290 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 181.833-14 chr20 20796692 20797195 + 0.666667 NA Intergenic Intergenic -84299 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 231.667-20 chr4 79333761 79334248 + 0.666667 NA Intergenic MER65A|LTR|ERV1 -7943 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 178.667-13 chr14 94415350 94415873 + 0.666667 NA Intergenic Intergenic -24919 NM_001127701 5265 Hs.525557 NM_000295 ENSG00000197249 SERPINA1 A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT|nNIF serpin family A member 1 protein-coding 246.333-22 chr18 13876189 13876892 + 0.666667 NA Intergenic Intergenic 38996 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 163.5-38 chr5 133320377 133320685 + 0.666667 NA intron (NM_015082, intron 4 of 15) L1ME4a|LINE|L1 107175 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 179-12 chr12 13962993 13963426 + 0.666667 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 17147 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 233.167-26 chrX 51148979 51149574 + 0.666667 NA intron (NR_110382, intron 1 of 8) L1M1|LINE|L1 22145 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 218.833 chr1 172356749 172357176 + 0.666667 NA intron (NM_015569, intron 17 of 20) L1MC4a|LINE|L1 -63723 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 187.667-14 chr13 20752969 20753421 + 0.666667 NA intron (NM_001318939, intron 2 of 4) L1MA4A|LINE|L1 20763 NM_174928 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 EEF1A lysine methyltransferase 1 protein-coding 254.667-28 chr5 149165209 149165681 + 0.666667 NA intron (NM_001370418, intron 1 of 18) intron (NM_001370418, intron 1 of 18) 23714 NM_001370417 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 195.667-36 chr5 73220554 73220954 + 0.666667 NA Intergenic Intergenic -18793 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 167.333-2 chr1 173556019 173556339 + 0.666667 NA intron (NM_178527, intron 10 of 27) intron (NM_178527, intron 10 of 27) 46893 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 169-6 chr10 44302017 44302425 + 0.666667 NA Intergenic Intergenic 9471 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 191.167-31 chrX 83758391 83758797 + 0.666667 NA Intergenic Intergenic -102532 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 190.667-28 chr20 3077492 3077942 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR 6097 NM_000915 5020 Hs.113216 NM_000915 ENSG00000101405 OXT OT|OT-NPI|OXT-NPI oxytocin/neurophysin I prepropeptide protein-coding 167.333-25 chr16 80393394 80393795 + 0.666667 NA intron (NR_120307, intron 2 of 5) L1MC5|LINE|L1 -147140 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 200.167-8 chr11 101007543 101007960 + 0.666667 NA Intergenic Intergenic 73477 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 176.833-27 chr3 104642514 104642827 + 0.666667 NA Intergenic L1MA1|LINE|L1 -724043 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 171.333-8 chr10 100784168 100784489 + 0.666667 NA intron (NM_003988, intron 5 of 10) intron (NM_003988, intron 5 of 10) 38617 NM_003987 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 210-3 chr10 32377606 32378178 + 0.666667 NA intron (NM_001282391, intron 1 of 13) intron (NM_001282391, intron 1 of 13) 877 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 166.333-47 chr6 131609742 131610164 + 0.666667 NA intron (NM_015979, intron 12 of 30) intron (NM_015979, intron 12 of 30) 18289 NM_015979 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 198.5 chr1 31820654 31821198 + 0.666667 NA Intergenic AluJb|SINE|Alu -4875 NM_144569 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 171-16 chr12 119901851 119902183 + 0.666667 NA Intergenic L1MB4|LINE|L1 -24697 NM_001206999 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 237.167-25 chr8 111476680 111477530 + 0.666667 NA Intergenic LTR43-int|LTR|ERV1 100466 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 183.667-19 chr17 693358 693996 + 0.666667 NA intron (NM_001366254, intron 4 of 19).2 AluJr4|SINE|Alu 21162 NM_018289 55275 Hs.461819 NM_018289 ENSG00000141252 VPS53 HCCS1|PCH2E|hVps53L|pp13624 VPS53 subunit of GARP complex protein-coding 188.5-17 chr15 26520109 26520520 + 0.666667 NA Intergenic AluSx|SINE|Alu 108776 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 201-3 chr1 112404277 112404835 + 0.666667 NA intron (NM_018704, intron 1 of 5) intron (NM_018704, intron 1 of 5) 8342 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 171.333-13 chr13 64617308 64617742 + 0.666667 NA Intergenic Intergenic -541514 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 193.333-23 chr16 85976678 85977182 + 0.666667 NA Intergenic Intergenic 58583 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 225.667-36 chr7 124126130 124126662 + 0.666667 NA Intergenic Intergenic -93329 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 202.5-21 chr14 71992432 71992988 + 0.666667 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 59183 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 204.333-45 chr7 123847514 123847858 + 0.666667 NA intron (NM_012269, intron 1 of 4) AluSc8|SINE|Alu 2517 NM_012269 23553 Hs.28673 NM_012269 ENSG00000106302 HYAL4 CSHY|HYAL-4 hyaluronidase 4 protein-coding 183-22 chr17 61990148 61990487 + 0.666667 NA intron (NM_005121, intron 11 of 29) L1MA8|LINE|L1 -62335 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 166.833-6 chr12 31006122 31006566 + 0.666667 NA Intergenic Intergenic 67503 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR|SCAT4 DDX11 antisense RNA 1 ncRNA 170.333-6 chr10 32904913 32905422 + 0.666667 NA intron (NM_002211, intron 15 of 15) intron (NM_002211, intron 15 of 15) -3695 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 173.167-21 chr2 137633278 137633628 + 0.666667 NA intron (NM_001316349, intron 20 of 27) intron (NM_001316349, intron 20 of 27) 294479 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 230.833-8 chr16 75804286 75804750 + 0.666667 NA Intergenic Intergenic -78028 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 180-58 chr7 112259204 112259778 + 0.666667 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 52796 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 180.333-41 chr3 188431425 188431843 + 0.666667 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 137032 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 164.833-5 chr12 20451681 20452237 + 0.666667 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 82714 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 163.5-15 chr14 100411770 100412064 + 0.666667 NA intron (NM_001350949, intron 2 of 6) MER119|DNA|hAT-Charlie 35432 NM_001350947 79446 Hs.497599 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 164.167-28 chr20 9266834 9267260 + 0.666667 NA intron (NM_182797, intron 1 of 35) intron (NM_182797, intron 1 of 35) -40753 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 166.167-39 chr9 107282732 107283331 + 0.666667 NA promoter-TSS (NM_002874) promoter-TSS (NM_002874) -248 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 190-41 chr5 97697211 97697750 + 0.666667 NA Intergenic Intergenic -143278 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 177.167-20 chr5 134304127 134304782 + 0.666667 NA exon (NM_001300853, exon 10 of 13) exon (NM_001300853, exon 10 of 13) 62620 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 206-26 chr3 62186176 62186704 + 0.666667 NA intron (NM_002841, intron 8 of 29) intron (NM_002841, intron 8 of 29) 132507 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 182.667-37 chr4 17670987 17671385 + 0.666667 NA intron (NM_015688, intron 7 of 17) L1M3d|LINE|L1 56545 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 217.667-26 chr2 188223470 188223988 + 0.666667 NA intron (NR_126396, intron 1 of 2) L2c|LINE|L2 63962 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 315.667-20 chr9 37785123 37785975 + 0.666667 NA promoter-TSS (NM_016042) promoter-TSS (NM_016042) -457 NM_001002269 51010 Hs.602571 NM_016042 ENSG00000107371 EXOSC3 CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 exosome component 3 protein-coding 175.333-12 chr14 53821272 53821686 + 0.666667 NA Intergenic MER20|DNA|hAT-Charlie 127005 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 285.334-4 chr5 5816012 5816862 + 0.666667 NA Intergenic L1MC3|LINE|L1 393760 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 163.5-46 chr7 33808172 33808431 + 0.666667 NA Intergenic Intergenic -96614 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 219.333-12 chr14 30203884 30204458 + 0.666667 NA Intergenic Intergenic -276324 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 176.667-35 chr22 20085155 20085536 + 0.666667 NA promoter-TSS (NR_037412) promoter-TSS (NR_037412) -401 NR_037412 100500860 NR_037412 ENSG00000284140 MIR3618 - microRNA 3618 ncRNA 186.667-30 chr16 81943781 81944387 + 0.666667 NA intron (NM_002661, intron 30 of 32) L1ME2z|LINE|L1 67386 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 227-12 chr14 75713387 75713913 + 0.666667 NA intron (NM_015072, intron 9 of 31) intron (NM_015072, intron 9 of 31) 52404 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 195.167-30 chr22 28019245 28019618 + 0.666667 NA intron (NM_001145418, intron 13 of 22) intron (NM_001145418, intron 13 of 22) -98819 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 166.667-9 chr11 95124129 95124540 + 0.666667 NA intron (NM_015036, intron 1 of 1) MIR|SINE|MIR -26205 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 164.667-10 chr10 70798893 70799330 + 0.666667 NA Intergenic LTR9|LTR|ERV1 -13692 NM_001318241 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 169.833-3 chr10 125297330 125297655 + 0.666667 NA Intergenic AluJb|SINE|Alu -136462 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 184.667-8 chr11 37125585 37126165 + 0.666667 NA Intergenic Intergenic -527596 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 217.667-14 chr11 111507943 111508503 + 0.666667 NA intron (NM_001367974, intron 1 of 4) intron (NM_001367974, intron 1 of 4) -2379 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 208.833-12 chr17 15924476 15925020 + 0.666667 NA Intergenic AluY|SINE|Alu -20169 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 245.667-26 chr6 157993103 157993491 + 0.666667 NA intron (NM_003898, intron 1 of 26) L1MA2|LINE|L1 -7810 NR_046796 100874300 Hs.742238 NR_046796 ENSG00000233496 SYNJ2-IT1 - SYNJ2 intronic transcript 1 ncRNA 190-35 chr3 24632915 24633312 + 0.666667 NA Intergenic L1MC3|LINE|L1 -137405 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 261.5-11 chr11 32115055 32115744 + 0.666667 NA Intergenic L2b|LINE|L2 24325 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 247.167-6 chr14 81267905 81268859 + 0.666667 NA 3' UTR (NM_001366850, exon 8 of 8) 3' UTR (NM_001366850, exon 8 of 8) -46992 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 176-36 chr6 26653331 26653800 + 0.666667 NA intron (NM_001242799, intron 1 of 2) L1MC4|LINE|L1 6181 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 226.833-6 chr11 84780307 84780839 + 0.666667 NA intron (NM_001351274, intron 5 of 26) L1M5|LINE|L1 -59631 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 166.167-14 chr16 55526695 55527136 + 0.666667 NA intron (NM_017839, intron 2 of 13) intron (NM_017839, intron 2 of 13) 17843 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 186.333-17 chr14 67846888 67847289 + 0.666667 NA intron (NM_133509, intron 4 of 10) L1PA16|LINE|L1 23496 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 223.5-19 chr3 97976884 97977434 + 0.666667 NA Intergenic Intergenic -4708 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 184.667-5 chr1 206411506 206411911 + 0.666667 NA intron (NM_015326, intron 9 of 21) intron (NM_015326, intron 9 of 21) -58768 NM_014002 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of nuclear factor kappa B kinase subunit epsilon protein-coding 215.667-38 chr5 132039424 132040106 + 0.666667 NA Intergenic L1PA13|LINE|L1 -20890 NM_000588 3562 Hs.694 NM_000588 ENSG00000164399 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 190.667-14 chr12 5442150 5442624 + 0.666667 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) 10279 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 179.333-2 chr1 162703430 162703928 + 0.666667 NA intron (NM_006182, intron 2 of 17) L2a|LINE|L2 71215 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 198.333-26 chr2 18874535 18874958 + 0.666667 NA Intergenic L1M4|LINE|L1 152225 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 205.667-16 chr19 40578603 40579063 + 0.666667 NA intron (NM_138392, intron 6 of 17) intron (NM_138392, intron 6 of 17) 1960 NM_138392 92799 Hs.26506 NM_138392 ENSG00000160410 SHKBP1 PP203|Sb1 SH3KBP1 binding protein 1 protein-coding 222.667-33 chr4 156078566 156079020 + 0.666667 NA Intergenic L1MB7|LINE|L1 -124927 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 224-14 chr14 73220920 73221421 + 0.666667 NA 3' UTR (NM_007318, exon 12 of 12) 3' UTR (NM_007318, exon 12 of 12) -16336 NR_158677 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 169.667-21 chr12 62032835 62033303 + 0.666667 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 159770 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 238.667-24 chr6 150817588 150817965 + 0.666667 NA intron (NM_001329803, intron 8 of 13) AluSx1|SINE|Alu -47903 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 192.667-16 chr2 27159955 27160394 + 0.666667 NA Intergenic THE1C|LTR|ERVL-MaLR 11170 NM_175769 150921 Hs.591583 NM_175769 ENSG00000163792 TCF23 OUT|TCF-23|bHLHa24 transcription factor 23 protein-coding 215.667-30 chr3 64423041 64423364 + 0.666667 NA Intergenic MLT1J|LTR|ERVL-MaLR -138144 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 166.333-41 chr3 125434034 125434499 + 0.666667 NA Intergenic Intergenic -58912 NM_001348436 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 166.333-11 chr11 27301120 27301516 + 0.666667 NA Intergenic L1MEc|LINE|L1 61897 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 202.667-13 chr16 53146501 53147051 + 0.666667 NA intron (NM_001352127, intron 1 of 38) AluSz6|SINE|Alu -9150 NM_001308319 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 214.667-24 chr21 36458537 36459037 + 0.666667 NA Intergenic AluSz|SINE|Alu 7680 NM_012130 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 205.833-23 chr4 31631343 31631663 + 0.666667 NA Intergenic Kanga11a|DNA|TcMar-Tc2 124959 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 192.333-44 chr6 27465296 27465850 + 0.666667 NA intron (NR_144688, intron 3 of 8) L1ME3|LINE|L1 7325 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 179.333-4 chr1 220328953 220329272 + 0.666667 NA Intergenic Intergenic -56659 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 173.333 chr1 40077650 40078011 + 0.666667 NA intron (NM_001142604, intron 4 of 5) L2c|LINE|L2 19422 NM_001142604 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 250.833-12 chr3 87378961 87379675 + 0.666667 NA Intergenic L1MEf|LINE|L1 -102734 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 250-34 chr7 48137261 48137880 + 0.666667 NA Intergenic MER51-int|LTR|ERV1 -33888 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 201.333-40 chr4 114379702 114380385 + 0.666667 NA Intergenic Intergenic -218359 NM_001322112 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 167.5-7 chr10 27897359 27897939 + 0.666667 NA intron (NM_001290021, intron 10 of 13) intron (NM_001290021, intron 10 of 13) 84222 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 241.333-35 chr7 38828429 38828809 + 0.666667 NA intron (NM_080631, intron 4 of 27) intron (NM_080631, intron 4 of 27) 80572 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 194.667-23 chr16 19324213 19324604 + 0.666667 NA Intergenic Intergenic 38677 NM_001256720 728276 Hs.632180 NM_001256720 ENSG00000261210 CLEC19A - C-type lectin domain containing 19A protein-coding 202.333-29 chr5 102719449 102720041 + 0.666667 NA Intergenic Intergenic -35038 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 177.833-26 chr20 48781006 48781453 + 0.666667 NA intron (NM_020820, intron 1 of 39) L1MC4a|LINE|L1 46770 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 183-6 chr10 87869113 87869626 + 0.666667 NA intron (NM_001304717, intron 2 of 9) AluSz|SINE|Alu 5744 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 173.5-22 chr14 76979765 76980122 + 0.666667 NA Intergenic AluSq2|SINE|Alu 20305 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 167.5-16 chr15 73471391 73471735 + 0.666667 NA intron (NM_001042367, intron 1 of 5) L2a|LINE|L2 28399 NM_001348772 283677 Hs.743574 NM_001042367 ENSG00000183324 REC114 C15orf60|CT147 REC114 meiotic recombination protein protein-coding 184.333-25 chr3 58144909 58145317 + 0.666667 NA intron (NM_001164318, intron 32 of 45) intron (NM_001164318, intron 32 of 45) 25522 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 169.667-32 chr2 11534416 11534851 + 0.666667 NA intron (NM_014668, intron 1 of 32) intron (NM_014668, intron 1 of 32) 588 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 180-62 chr8 137800949 137801446 + 0.666667 NA Intergenic LTR36|LTR|ERV1 282348 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 264.333-13 chr19 29560956 29561503 + 0.666667 NA intron (NM_001146339, intron 4 of 4) AluSz|SINE|Alu 34645 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 203.5-42 chr8 127553955 127554380 + 0.666667 NA Intergenic Intergenic -72028 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 171.5-42 chr7 70398748 70399005 + 0.666667 NA intron (NM_015570, intron 4 of 18) L1ME1|LINE|L1 -733268 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 224.833-9 chr14 27085040 27085448 + 0.666667 NA Intergenic Intergenic 176602 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 167-38 chr6 117269420 117269768 + 0.666667 NA intron (NM_153453, intron 2 of 2) intron (NM_153453, intron 2 of 2) 4036 NM_182645 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 234.333-18 chr2 234948302 234949061 + 0.666667 NA Intergenic Intergenic -3336 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 179.833-24 chr3 158766742 158767057 + 0.666667 NA Intergenic L2b|LINE|L2 -34413 NM_002888 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 220.667-31 chr5 77431095 77431605 + 0.666667 NA 3' UTR (NM_018268, exon 13 of 13) 3' UTR (NM_018268, exon 13 of 13) 60966 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 201-22 chr2 157246771 157247139 + 0.666667 NA Intergenic Intergenic -10750 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 169.167-21 chr3 26063379 26063896 + 0.666667 NA Intergenic Intergenic -189942 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 264.333-2 chr1 218039877 218040693 + 0.666667 NA Intergenic Intergenic -3220 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 204.667-8 chr11 121203654 121204221 + 0.666667 NA Intergenic Intergenic -88834 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 194.333-33 chr8 52278693 52279135 + 0.666667 NA intron (NR_148195, intron 2 of 3) L1MEd|LINE|L1 -24422 NM_001352842 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 174.667-28 chr2 237172833 237173268 + 0.666667 NA Intergenic L1MB3|LINE|L1 87161 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 165-41 chr4 138183013 138183286 + 0.666667 NA intron (NM_014331, intron 8 of 11) intron (NM_014331, intron 8 of 11) -52464 NR_037866 641365 Hs.435630 NR_037866 ENSG00000248307 LINC00616 - long intergenic non-protein coding RNA 616 ncRNA 232.833-14 chr16 71746197 71746666 + 0.666667 NA intron (NM_001128, intron 17 of 22) intron (NM_001128, intron 17 of 22) 12056 NR_003059 692111 NR_003059 ENSG00000223224 SNORD71 HBII-239|MIRN768|hsa-mir-768 small nucleolar RNA, C/D box 71 snoRNA 211.333-38 chr5 76057275 76057646 + 0.666667 NA Intergenic L1PA5|LINE|L1 -25923 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 214-4 chr1 218917144 218917557 + 0.666667 NA intron (NR_146917, intron 2 of 4) Charlie1b|DNA|hAT-Charlie 1161 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 185.333-17 chr16 57603195 57603491 + 0.666667 NA Intergenic Intergenic -16395 NM_001370451 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 202-36 chr8 22561483 22561989 + 0.666667 NA intron (NM_005775, intron 6 of 20) intron (NM_005775, intron 6 of 20) -3993 NM_001018003 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 167.333-55 chr8 121413107 121413605 + 0.666667 NA Intergenic LTR43B|LTR|ERV1 -225990 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 184-31 chr20 50676793 50677305 + 0.666667 NA intron (NM_001290268, intron 1 of 21) intron (NM_001290268, intron 1 of 21) 14493 NM_001290268 140876 Hs.372578 NM_080829 ENSG00000042062 RIPOR3 C20orf175|C20orf176|FAM65C RIPOR family member 3 protein-coding 195-9 chr12 39375585 39375923 + 0.666667 NA intron (NM_001173464, intron 1 of 37) LTR40c|LTR|ERVL 67366 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 195.333-3 chr1 246753696 246754280 + 0.666667 NA intron (NM_016002, intron 5 of 11) HERVIP10B3-int|LTR|ERV1 29579 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 265.333-12 chr21 16435180 16435592 + 0.666667 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 15091 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 209.667-45 chr9 29282278 29282814 + 0.666667 NA Intergenic Intergenic -68945 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 177.833-16 chr18 9414412 9414816 + 0.666667 NA Intergenic L1ME4b|LINE|L1 -60899 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 227.333-14 chr16 3831591 3832161 + 0.666667 NA intron (NM_004380, intron 2 of 30) AluSz6|SINE|Alu 48244 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 227-19 chr2 144648075 144648732 + 0.666667 NA Intergenic Intergenic -19564 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 217-3 chr11 87156385 87157024 + 0.666667 NA intron (NM_001168724, intron 4 of 13) intron (NM_001168724, intron 4 of 13) 118770 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 188.167-29 chr5 72975176 72975622 + 0.666667 NA intron (NM_001146032, intron 2 of 24) AluSz6|SINE|Alu 19358 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 214.833-5 chr10 48727163 48727721 + 0.666667 NA intron (NM_020945, intron 6 of 61) intron (NM_020945, intron 6 of 61) 41979 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 258.667-24 chr6 42387851 42388632 + 0.666667 NA intron (NM_001297573, intron 2 of 17) intron (NM_001297573, intron 2 of 17) 63810 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 175.667-43 chr5 114685854 114686359 + 0.666667 NA intron (NR_130785, intron 1 of 12) AluSx3|SINE|Alu 87307 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 194.5-35 chr3 112105057 112105423 + 0.666667 NA intron (NM_001171747, intron 3 of 3) intron (NM_001171747, intron 3 of 3) -7561 NR_030292 693152 NR_030292 ENSG00000207940 MIR567 MIRN567|hsa-mir-567 microRNA 567 ncRNA 204.833-29 chr8 116917983 116918362 + 0.666667 NA Intergenic Intergenic -20035 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 167.667-8 chr14 48025426 48025761 + 0.666667 NA Intergenic Intergenic -230579 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 169.833-19 chr17 50737823 50738235 + 0.666667 NA intron (NM_006107, intron 2 of 10) intron (NM_006107, intron 2 of 10) 18426 NM_016424 51747 Hs.130293 NM_006107 ENSG00000108848 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7 like 3 pre-mRNA splicing factor protein-coding 223.667-30 chr2 61370549 61371049 + 0.666667 NA intron (NM_014709, intron 8 of 79) intron (NM_014709, intron 8 of 79) 46578 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 194.833-25 chr6 84978609 84979158 + 0.666667 NA Intergenic MIR1_Amn|SINE|MIR -214285 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 175.333-6 chr11 107666392 107666678 + 0.666667 NA 3' UTR (NM_001130037, exon 11 of 11) 3' UTR (NM_001130037, exon 11 of 11) 45521 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 175.667-40 chr3 192984257 192984756 + 0.666667 NA Intergenic Intergenic -66650 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 172.167-30 chr8 87566545 87566921 + 0.666667 NA Intergenic Intergenic 307282 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 195.833-9 chr12 59414692 59415049 + 0.666667 NA Intergenic Intergenic -181159 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 179.167-12 chr18 9227544 9227844 + 0.666667 NA intron (NM_001204056, intron 7 of 11) L1MA4A|LINE|L1 90131 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 254.667-2 chr10 44123435 44123945 + 0.666667 NA Intergenic L1MC3|LINE|L1 -169060 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 196.5-34 chr5 16889775 16890282 + 0.666667 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 46260 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 186-2 chr1 178068844 178069304 + 0.666667 NA Intergenic MLT1F|LTR|ERVL-MaLR 24919 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 223.5-34 chrX 44057320 44057897 + 0.666667 NA Intergenic Intergenic -84218 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 168.667-14 chr14 40929999 40930550 + 0.666667 NA Intergenic Intergenic -24437 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 206.333-23 chr2 172783030 172783371 + 0.666667 NA intron (NM_007023, intron 1 of 30) LTR84b|LTR|ERVL -38387 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 177.167-21 chr6 11194465 11194744 + 0.666667 NA intron (NM_001271033, intron 1 of 5) intron (NM_001271033, intron 1 of 5) 38064 NM_006403 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 178.333-13 chr14 81239939 81240345 + 0.666667 NA Intergenic L1MA5A|LINE|L1 -18752 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 192.333-45 chr6 47786921 47787377 + 0.666667 NA promoter-TSS (NR_033806) promoter-TSS (NR_033806) 81 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 164.167-11 chr11 117232315 117232597 + 0.666667 NA promoter-TSS (NM_001278249) promoter-TSS (NM_001278249) -215 NM_207343 257160 Hs.591934 NM_207343 ENSG00000167257 RNF214 - ring finger protein 214 protein-coding 198.333-19 chr14 54768416 54768867 + 0.666667 NA intron (NM_015589, intron 7 of 11) intron (NM_015589, intron 7 of 11) 13808 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 262-21 chr5 11847174 11847730 + 0.666667 NA intron (NM_001288717, intron 1 of 20) L1MA6|LINE|L1 56994 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 193-18 chr18 35249741 35250097 + 0.666667 NA TTS (NM_001135178) TTS (NM_001135178) 8885 NM_001135178 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 189.5-23 chr2 151304771 151305065 + 0.666667 NA Intergenic L1MB3|LINE|L1 -15250 NM_004688 9111 Hs.54483 NM_004688 ENSG00000123609 NMI - N-myc and STAT interactor protein-coding 176.667-38 chr3 52686773 52687355 + 0.666667 NA intron (NM_206826, intron 2 of 14) intron (NM_206826, intron 2 of 14) 1032 NM_014366 26354 Hs.313544 NM_014366 ENSG00000163938 GNL3 C77032|E2IG3|NNP47|NS G protein nucleolar 3 protein-coding 253.5-5 chr10 87862930 87863623 + 0.666667 NA promoter-TSS (NM_001304718) promoter-TSS (NM_001304718) 161 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53 regulated DNA replication inhibitor protein-coding 178.5-31 chr4 58001745 58002310 + 0.666667 NA Intergenic Intergenic 534301 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 170.167-23 chr2 188846484 188847069 + 0.666667 NA Intergenic L1MA9|LINE|L1 -56653 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 187-7 chr10 82160261 82160695 + 0.666667 NA intron (NR_163251, intron 2 of 9) intron (NR_163251, intron 2 of 9) 72442 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 182.667-13 chr11 112555495 112555877 + 0.666667 NA non-coding (NR_104155, exon 1 of 4) non-coding (NR_104155, exon 1 of 4) 116 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 206.333-12 chr14 69005333 69005864 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie 25916 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 236.5-34 chr8 72107794 72108308 + 0.666667 NA Intergenic Intergenic -32467 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 220.833-26 chr8 89703851 89704286 + 0.666667 NA Intergenic L1PBb|LINE|L1 53643 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 214.667-10 chr15 45198286 45198706 + 0.666667 NA intron (NM_138356, intron 2 of 7) intron (NM_138356, intron 2 of 7) 2620 NM_138356 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 197.667-16 chr13 22465813 22466189 + 0.666667 NA Intergenic Intergenic 255716 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 189.667-3 chr1 199017570 199018029 + 0.666667 NA intron (NR_126351, intron 1 of 2) intron (NR_126351, intron 1 of 2) 1165 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 183-33 chr21 28702685 28703219 + 0.666667 NA Intergenic L1PA15|LINE|L1 163634 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 171.833-12 chr2 96763440 96763759 + 0.666667 NA intron (NM_020184, intron 1 of 6) intron (NM_020184, intron 1 of 6) 2697 NM_020184 26504 Hs.175043 NM_020184 ENSG00000158158 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 167-5 chr1 202731638 202731960 + 0.666667 NA intron (NM_001314042, intron 25 of 27) intron (NM_001314042, intron 25 of 27) -21345 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 222-29 chr8 81375340 81375913 + 0.666667 NA Intergenic A-rich|Low_complexity|Low_complexity 71813 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 211.667-36 chr6 35731983 35732559 + 0.666667 NA non-coding (NR_027117, exon 5 of 10) non-coding (NR_027117, exon 5 of 10) -3688 NM_001145775 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 165.667-45 chr5 165124176 165124487 + 0.666667 NA Intergenic Intergenic 654052 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 177.667-13 chr14 67109911 67110385 + 0.666667 NA exon (NM_020806, exon 14 of 23) exon (NM_020806, exon 14 of 23) -79292 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 166-62 chr7 6680189 6680512 + 0.666667 NA Intergenic MLT1L|LTR|ERVL-MaLR 26597 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 204.667-20 chr2 35496428 35496834 + 0.666667 NA Intergenic Intergenic 25226 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 250.167-18 chr8 130867519 130868064 + 0.666667 NA intron (NM_001115, intron 9 of 17) intron (NM_001115, intron 9 of 17) 173118 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 184.5-57 chrX 153927900 153928220 + 0.666667 NA Intergenic CpG -1796 NM_001666 393 Hs.701324 NM_001666 ENSG00000089820 ARHGAP4 C1|RGC1|RhoGAP4|SrGAP4|p115 Rho GTPase activating protein 4 protein-coding 192-52 chrX 52989931 52990240 + 0.666667 NA intron (NM_001242492, intron 1 of 4) intron (NM_001242492, intron 1 of 4) 5387 NM_001242494 29057 Hs.6451 NM_014138 ENSG00000268350 FAM156A PRO0659|TMEM29 family with sequence similarity 156 member A protein-coding 231.667-6 chr14 57735759 57736238 + 0.666667 NA intron (NR_159373, intron 1 of 10) AluJr|SINE|Alu 129001 NM_001352013 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 215.667-40 chr6 33514861 33515365 + 0.666667 NA Intergenic Intergenic 60537 NM_152735 221504 Hs.591805 NM_152735 ENSG00000213588 ZBTB9 ZNF919 zinc finger and BTB domain containing 9 protein-coding 182-33 chr4 55904341 55904638 + 0.666667 NA exon (NM_018261, exon 19 of 19) exon (NM_018261, exon 19 of 19) -44456 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 341.5-5 chr11 110007713 110008239 + 0.666667 NA Intergenic Intergenic -85416 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 175.167-26 chr20 64055948 64056279 + 0.666667 NA promoter-TSS (NM_198723) promoter-TSS (NM_198723) -859 NM_198723 6919 Hs.505004 NM_003195 ENSG00000171703 TCEA2 TFIIS transcription elongation factor A2 protein-coding 247-7 chr12 18138395 18139039 + 0.666667 NA Intergenic Intergenic -48524 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 251.667-17 chr16 50677605 50678090 + 0.666667 NA intron (NM_182854, intron 1 of 3) intron (NM_182854, intron 1 of 3) 3465 NM_001144972 124460 Hs.460777 NM_153337 ENSG00000167208 SNX20 SLIC1 sorting nexin 20 protein-coding 184.5-17 chr14 77862352 77862894 + 0.666667 NA intron (NM_001366489, intron 4 of 9) intron (NM_001366489, intron 4 of 9) 62514 NR_158988 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 219-37 chr8 124948599 124949077 + 0.666667 NA intron (NR_027321, intron 3 of 3) L1MC4|LINE|L1 6830 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 275.333-3 chr10 85532517 85532995 + 0.666667 NA Intergenic LTR8|LTR|ERV1 -44975 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 165.5-43 chr8 65095608 65096091 + 0.666667 NA Intergenic ERVL47-int|LTR|ERVL 84491 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 163.833-33 chr5 2550200 2550484 + 0.666667 NA Intergenic Intergenic -162249 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 171.667-35 chr20 34206875 34207247 + 0.666667 NA Intergenic L1MA4|LINE|L1 -53304 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 274.167-21 chr8 81033189 81033801 + 0.666667 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 78573 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 183.667-58 chr8 127854115 127854609 + 0.666667 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 58400 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 171.167-10 chr12 2222899 2223381 + 0.666667 NA intron (NR_046578, intron 1 of 3) intron (NR_046578, intron 1 of 3) 341 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 208.5-29 chr21 16332004 16332399 + 0.666667 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -47433 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 163.667-18 chr15 48931009 48931397 + 0.666667 NA intron (NM_203349, intron 1 of 11) MER5B|DNA|hAT-Charlie 32716 NM_203349 399694 Hs.642615 NM_203349 ENSG00000185634 SHC4 RaLP|SHCD SHC adaptor protein 4 protein-coding 166.833-21 chr3 32239817 32240281 + 0.666667 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) 1369 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 181.333-27 chr22 19947925 19948310 + 0.666667 NA intron (NM_001362828, intron 1 of 5) LTR13|LTR|ERVK -2785 NM_001135161 1312 Hs.370408 NM_000754 ENSG00000093010 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 210.667-27 chr2 61004694 61005178 + 0.666667 NA intron (NM_144709, intron 4 of 17) intron (NM_144709, intron 4 of 17) 12276 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 175.333-8 chr12 14510799 14511131 + 0.666667 NA intron (NM_024829, intron 8 of 10) intron (NM_024829, intron 8 of 10) -56767 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 233.667-32 chr6 154788732 154789143 + 0.666667 NA intron (NM_014892, intron 4 of 19) intron (NM_014892, intron 4 of 19) 55559 NM_001286188 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 279.667-13 chr2 240149767 240150341 + 0.666667 NA Intergenic Intergenic -9396 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 247-21 chr2 18382799 18383354 + 0.666667 NA Intergenic L1MEc|LINE|L1 177577 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 186.333-11 chr13 104096659 104097077 + 0.666667 NA Intergenic Intergenic 671668 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 235.333-21 chr5 4876969 4877524 + 0.666667 NA Intergenic Intergenic 103765 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 222.333 chr1 40040297 40040747 + 0.666667 NA promoter-TSS (NM_001350482) promoter-TSS (NM_001350482) -61 NM_001350478 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 170-44 chr5 79877460 79877804 + 0.666667 NA Intergenic L2b|LINE|L2 -58947 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 238-28 chr5 54516286 54516885 + 0.666667 NA Intergenic Intergenic -1174 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 199-59 chr9 88388957 88389503 + 0.666667 NA intron (NM_006717, intron 1 of 5) CpG 786 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 203.333-3 chr1 107150387 107150796 + 0.666667 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 2522 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 171.333-21 chr16 64664453 64664853 + 0.666667 NA Intergenic Intergenic 457410 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 221.5-10 chr14 51821265 51822053 + 0.666667 NA Intergenic Intergenic -38953 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 211.167-5 chr11 19663686 19664223 + 0.666667 NA intron (NM_001111018, intron 1 of 37) MER117|DNA|hAT-Charlie -48883 NM_182964 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 203.334-9 chr5 172963216 172963891 + 0.666667 NA intron (NM_001317982, intron 2 of 3) L2c|LINE|L2 4093 NM_001317982 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 260.167-2 chr1 199113178 199113818 + 0.666667 NA Intergenic Intergenic -35100 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 235.167-30 chr6 165823579 165824172 + 0.666667 NA Intergenic Tigger3b|DNA|TcMar-Tigger -161595 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 196.833 chr1 231619580 231620158 + 0.666667 NA intron (NR_028400, intron 6 of 7) MIR|SINE|MIR -6921 NM_001164541 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 185.333-15 chr13 48785310 48785628 + 0.666667 NA Intergenic MER2|DNA|TcMar-Tigger 131540 NM_001308468 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 220.5-15 chr15 91883855 91884343 + 0.666667 NA intron (NR_135775, intron 1 of 10) MIR|SINE|MIR 29795 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 185-20 chr13 109700484 109700916 + 0.666667 NA Intergenic Intergenic -27574 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 183.333-8 chr1 223831382 223831838 + 0.666667 NA intron (NM_005426, intron 1 of 18) intron (NM_005426, intron 1 of 18) 14337 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 197.833-9 chr11 132304749 132305101 + 0.666667 NA intron (NM_016522, intron 3 of 6) intron (NM_016522, intron 3 of 6) 20623 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 201.333-30 chr22 28569648 28570212 + 0.666667 NA intron (NM_001145418, intron 2 of 22) L1PA15|LINE|L1 109935 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 166-3 chr1 156052570 156052994 + 0.666667 NA intron (NM_001304342, intron 1 of 10) intron (NM_001304342, intron 1 of 10) 1016 NM_020131 56893 Hs.283739 NM_020131 ENSG00000160803 UBQLN4 A1U|A1Up|C1orf6|CIP75|UBIN ubiquilin 4 protein-coding 193.167-14 chr17 17680871 17681303 + 0.666667 NA promoter-TSS (NM_030665) promoter-TSS (NM_030665) -371 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 166.333-24 chr17 15957067 15957374 + 0.666667 NA intron (NM_000676, intron 1 of 1) intron (NM_000676, intron 1 of 1) 12303 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 163.333-36 chr20 56202457 56202889 + 0.666667 NA Intergenic Intergenic -46059 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 236-11 chr2 47881715 47882118 + 0.666667 NA intron (NM_001190274, intron 1 of 22) AluSz6|SINE|Alu 6803 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 164-45 chr5 67444207 67444601 + 0.666667 NA Intergenic Intergenic 202385 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 211.667-15 chr2 19929211 19929691 + 0.666667 NA intron (NM_001006657, intron 26 of 27) intron (NM_001006657, intron 26 of 27) -27468 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 180.333-35 chr21 34887388 34887779 + 0.666667 NA 5' UTR (NM_001122607, exon 1 of 5) 5' UTR (NM_001122607, exon 1 of 5) 1116 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 164.833-20 chr8 92672807 92673403 + 0.666667 NA Intergenic Intergenic -17611 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 194.167-31 chr5 170985856 170986329 + 0.666667 NA intron (NM_022897, intron 14 of 27) MER94|DNA|hAT-Blackjack 124074 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 235.667-6 chr11 65416462 65416908 + 0.666667 NA Intergenic Intergenic -6113 NR_131012 283131 Hs.523789 NR_002802 ENSG00000245532 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 ncRNA 171.333-20 chr16 31458077 31458529 + 0.666667 NA promoter-TSS (NM_001105247) promoter-TSS (NM_001105247) -1 NM_001288767 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 190.667-12 chr11 96457391 96457983 + 0.666667 NA intron (NR_047481, intron 1 of 4) MSTA|LTR|ERVL-MaLR 49190 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 193.667-5 chr1 160727427 160727944 + 0.666667 NA Intergenic AluSc|SINE|Alu -11372 NM_001282594 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 192.833-18 chr2 96734070 96734473 + 0.666667 NA intron (NM_030805, intron 3 of 7) intron (NM_030805, intron 3 of 7) 5805 NM_001142292 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 196.5-33 chr4 49102090 49102716 + 0.666667 NA Intergenic (CATTC)n|Satellite|Satellite 115761 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 168.667-19 chr17 55457980 55458398 + 0.666667 NA Intergenic Intergenic -36354 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 199.333-24 chr18 13652600 13652988 + 0.666667 NA TTS (NM_181481) TTS (NM_181481) 11036 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 204-27 chr3 14716628 14717170 + 0.666667 NA intron (NM_001184957, intron 9 of 16) intron (NM_001184957, intron 9 of 16) 41758 NM_032137 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 202.667-45 chrX 48802117 48802441 + 0.666667 NA promoter-TSS (NR_135591) promoter-TSS (NR_135591) 212 NM_001321226 10013 Hs.6764 NM_006044 ENSG00000094631 HDAC6 CPBHM|HD6|JM21|PPP1R90 histone deacetylase 6 protein-coding 406-4 chr14 65102901 65103918 + 0.666667 NA promoter-TSS (NM_145114) promoter-TSS (NM_145114) -714 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 181.333-6 chr11 95225551 95225908 + 0.666667 NA intron (NM_001271594, intron 1 of 8) intron (NM_001271594, intron 1 of 8) -4457 NR_110295 100129203 Hs.191599 NR_110295 LOC100129203 - uncharacterized LOC100129203 ncRNA 230.333-29 chr6 64507931 64508412 + 0.666667 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 701335 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 207.333-41 chr6 34854136 34854733 + 0.666667 NA intron (NM_017754, intron 8 of 20) MER106B|DNA|hAT-Charlie 33608 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 192.333-52 chr8 117962151 117962590 + 0.666667 NA intron (NM_000127, intron 1 of 10) AluJr|SINE|Alu -41457 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 163.833 chr1 48075043 48075403 + 0.666667 NA Intergenic Intergenic -77838 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 185.667-42 chr8 81588006 81588363 + 0.666667 NA Intergenic MLT2A2|LTR|ERVL 43093 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 168.333-28 chr19 31132447 31132752 + 0.666667 NA Intergenic Intergenic -34911 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 218.833-6 chr12 4887281 4887632 + 0.666667 NA Intergenic L1MB3|LINE|L1 -22449 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 168.833-8 chr17 7514912 7515231 + 0.666667 NA TTS (NM_000937) TTS (NM_000937) 30705 NM_000937 5430 Hs.270017 NM_000937 POLR2A POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1 RNA polymerase II subunit A protein-coding 226.666-5 chr3 133384420 133385091 + 0.666667 NA intron (NM_023943, intron 4 of 5) intron (NM_023943, intron 4 of 5) -15301 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 206.667-54 chr8 20222598 20223103 + 0.666667 NA Intergenic Intergenic 25469 NM_001693 526 Hs.295917 NM_001693 ENSG00000147416 ATP6V1B2 ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2 ATPase H+ transporting V1 subunit B2 protein-coding 184.333-5 chr1 244739807 244740277 + 0.666667 NA Intergenic LTR8|LTR|ERV1 86916 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 189.833-16 chr6 166723219 166723548 + 0.666667 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -96132 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 185.167-10 chr15 79339706 79340205 + 0.666667 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) 28843 NM_007364 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 198.167-18 chr20 19199425 19200096 + 0.666667 NA Intergenic L1PA17|LINE|L1 -12882 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 183.333-40 chr2 207560036 207560481 + 0.666667 NA exon (NM_004379, exon 3 of 8) exon (NM_004379, exon 3 of 8) 1136 NM_001371428 198.5-27 chr2 218963068 218963453 + 0.666667 NA Intergenic CpG 3594 NM_003936 8941 Hs.158460 NM_003936 ENSG00000171450 CDK5R2 NCK5AI|P39|p39nck5ai cyclin dependent kinase 5 regulatory subunit 2 protein-coding 171.833-23 chr5 13399605 13400124 + 0.666667 NA Intergenic Intergenic -366978 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 200.5-24 chr2 53730469 53731035 + 0.666667 NA intron (NM_001201965, intron 2 of 8) L1P4|LINE|L1 -37031 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 202.833-3 chr1 209286646 209287139 + 0.666667 NA Intergenic L2c|LINE|L2 -38564 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 222.333-19 chr2 112725712 112726364 + 0.666667 NA intron (NM_001350494, intron 13 of 16) intron (NM_001350494, intron 13 of 16) 4552 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 164.333-51 chr8 33424107 33424513 + 0.666667 NA intron (NM_032664, intron 3 of 4) intron (NM_032664, intron 3 of 4) 48836 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 227.666-6 chr16 6349139 6349802 + 0.666667 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 329767 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 165.167-18 chr2 68440228 68440767 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 26797 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 205-8 chr16 27323212 27323781 + 0.666667 NA intron (NM_001257997, intron 1 of 9) MIR|SINE|MIR 9522 NM_001257997 3566 Hs.513457 NM_000418 ENSG00000077238 IL4R CD124|IL-4RA|IL4RA interleukin 4 receptor protein-coding 223.667-52 chrX 37931870 37932258 + 0.666667 NA Intergenic MamRep1151|LTR?|LTR? -58715 NM_012274 25763 Hs.122959 NM_012274 ENSG00000187516 HYPM CXorf27|HIP17 huntingtin interacting protein M protein-coding 180.667-8 chr10 109621517 109621945 + 0.666667 NA Intergenic Intergenic 301515 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 181.667-48 chr9 70927224 70927660 + 0.666667 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -58390 NM_024971 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 200.667-36 chr4 6198741 6199320 + 0.666667 NA intron (NM_144720, intron 1 of 12) intron (NM_144720, intron 1 of 12) 1519 NM_001099433 152789 Hs.479066 NM_144720 ENSG00000152969 JAKMIP1 Gababrbp|JAMIP1|MARLIN1 janus kinase and microtubule interacting protein 1 protein-coding 189.667-49 chr7 13850220 13850751 + 0.666667 NA Intergenic Intergenic 136029 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 186.167-23 chr7 5652108 5652655 + 0.666667 NA intron (NM_207111, intron 14 of 16) intron (NM_207111, intron 14 of 16) 28080 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 197.167-6 chr11 41431924 41432375 + 0.666667 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 27487 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 169-39 chr4 105921950 105922431 + 0.666667 NA intron (NM_001184690, intron 3 of 12) intron (NM_001184690, intron 3 of 12) 26719 NM_001033047 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 164.667-46 chr6 4018482 4018816 + 0.666667 NA Intergenic CpG -2651 NR_146785 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 174.667-20 chr19 13901384 13901721 + 0.666667 NA intron (NM_001345843, intron 2 of 8) AluSx1|SINE|Alu 4565 NM_001345847 79173 Hs.143288 NM_024323 ENSG00000132016 C19orf57 - chromosome 19 open reading frame 57 protein-coding 213-20 chr17 10543005 10543367 + 0.666667 NA intron (NM_001100112, intron 8 of 39) intron (NM_001100112, intron 8 of 39) 6437 NM_001100112 4620 Hs.667534 NM_017534 ENSG00000125414 MYH2 IBM3|MYH2A|MYHSA2|MYHas8|MYPOP|MyHC-2A|MyHC-IIa myosin heavy chain 2 protein-coding 174.333-22 chr2 207718936 207719290 + 0.666667 NA intron (NM_001330218, intron 1 of 9) L1MC5a|LINE|L1 7573 NM_001142300 151195 Hs.471234 NM_152523 ENSG00000163249 CCNYL1 - cyclin Y like 1 protein-coding 201.5-38 chr8 124526600 124527185 + 0.666667 NA intron (NM_001317889, intron 1 of 12) L1MC5a|LINE|L1 12193 NM_032026 83940 Hs.170568 NM_032026 ENSG00000147687 TATDN1 CDA11 TatD DNase domain containing 1 protein-coding 185.333-26 chr2 76550839 76551291 + 0.666667 NA Intergenic Intergenic -434900 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 178.667-27 chr3 33299422 33299752 + 0.666667 NA intron (NM_001349322, intron 3 of 12) intron (NM_001349322, intron 3 of 12) 22145 NM_001349325 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 241.833-9 chr22 46068026 46068628 + 0.666667 NA intron (NR_148973, intron 1 of 1) intron (NR_148973, intron 1 of 1) 2694 NR_148973 642648 Hs.631363 NR_148973 LOC642648 - uncharacterized LOC642648 ncRNA 195.666-2 chr22 36079161 36079726 + 0.666667 NA Intergenic Intergenic -50619 NM_001082578 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 193-19 chr18 38731683 38732072 + 0.666667 NA Intergenic Intergenic 890298 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 182.667-34 chr3 155978433 155978839 + 0.666667 NA Intergenic L1ME3E|LINE|L1 107986 NM_003875 8833 Hs.591314 NM_003875 ENSG00000163655 GMPS GATD7 guanine monophosphate synthase protein-coding 169.333-20 chr12 79691173 79691566 + 0.666667 NA promoter-TSS (NM_002583) promoter-TSS (NM_002583) -272 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 207.167-31 chr8 127914132 127914487 + 0.666667 NA intron (NR_003367, intron 2 of 8) L1MB5|LINE|L1 34414 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 210.334-10 chr5 10434878 10435401 + 0.666667 NA 3' UTR (NM_001270661, exon 23 of 23) 3' UTR (NM_001270661, exon 23 of 23) 6712 NR_102746 100505845 Hs.599395 NR_102746 ROPN1L-AS1 - ROPN1L antisense RNA 1 ncRNA 210.167-34 chr9 6144744 6145096 + 0.666667 NA Intergenic L1MC5|LINE|L1 -70229 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 210.833-7 chr10 112112912 112113316 + 0.666667 NA Intergenic Intergenic 70651 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 186.667-40 chr22 45752095 45752384 + 0.666667 NA intron (NM_013236, intron 9 of 11) L2b|LINE|L2 -8285 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 171.667-53 chr7 1703008 1703427 + 0.666667 NA intron (NM_001128636, intron 1 of 2) L1ME4c|LINE|L1 15098 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 231.333-22 chr19 49451412 49451796 + 0.666667 NA 5' UTR (NM_017916, exon 1 of 9) 5' UTR (NM_017916, exon 1 of 9) 210 NM_017916 55011 Hs.5245 NM_017916 ENSG00000104872 PIH1D1 NOP17|Pih1 PIH1 domain containing 1 protein-coding 208.833-19 chr22 22345728 22346268 + 0.666667 NA Intergenic Intergenic 47900 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 176.167-4 chr10 29895389 29895874 + 0.666667 NA Intergenic Intergenic -158695 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 181.333-36 chr6 10980004 10980476 + 0.666667 NA TTS (NM_017770) TTS (NM_017770) -26151 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 171.333-53 chr8 81801254 81801699 + 0.666667 NA non-coding (NR_145473, exon 6 of 6) non-coding (NR_145473, exon 6 of 6) 40709 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 181.833-3 chr14 56820067 56820399 + 0.666667 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 7075 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 189.667-12 chr12 53360035 53360536 + 0.666667 NA Intergenic AluJo|SINE|Alu -15492 NM_001300837 121340 Hs.209402 NM_152860 ENSG00000170374 SP7 OI11|OI12|OSX|osterix Sp7 transcription factor protein-coding 172-20 chr17 21013100 21013466 + 0.666667 NA intron (NM_015276, intron 6 of 12) intron (NM_015276, intron 6 of 12) 29728 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 241.667-27 chr6 133951080 133951649 + 0.666667 NA promoter-TSS (NM_001253676) promoter-TSS (NM_001253676) -806 NM_001253676 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 165.667-28 chr19 44078397 44078854 + 0.666667 NA intron (NM_001037813, intron 2 of 4) AluJo|SINE|Alu 6466 NM_001037813 342909 Hs.445395 NM_001037813 ENSG00000186026 ZNF284 ZNF284L zinc finger protein 284 protein-coding 173.833-35 chr8 29500253 29500740 + 0.666667 NA Intergenic L1ME4a|LINE|L1 -149812 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 226.667-8 chr11 38122320 38122909 + 0.666667 NA Intergenic Intergenic 184013 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 232.167-6 chr12 95527138 95527811 + 0.666667 NA intron (NR_144944, intron 2 of 4) intron (NR_144944, intron 2 of 4) 20764 NM_001278393 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 191.167-20 chr4 42593570 42594029 + 0.666667 NA intron (NM_006095, intron 6 of 36) intron (NM_006095, intron 6 of 36) 63306 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 220-22 chr5 23599999 23600403 + 0.666667 NA Intergenic L1PA8A|LINE|L1 92546 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 213.167-21 chr4 176123970 176124393 + 0.666667 NA intron (NM_170710, intron 5 of 30) intron (NM_170710, intron 5 of 30) 58340 NM_181265 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 211.667-24 chr2 200526256 200526697 + 0.666667 NA intron (NM_001160046, intron 1 of 8) CpG 269 NM_152524 151246 Hs.655182 NM_152524 ENSG00000163535 SGO2 SGOL2|TRIPIN shugoshin 2 protein-coding 199-50 chr7 70117274 70117589 + 0.666667 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 518956 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 168.333-39 chr2 186503255 186503596 + 0.666667 NA intron (NM_018471, intron 5 of 9) AluSq|SINE|Alu 17165 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 201.167-12 chr14 59283431 59284090 + 0.666667 NA intron (NM_001270520, intron 2 of 24) intron (NM_001270520, intron 2 of 24) 20319 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 190.833-18 chr3 73909737 73910085 + 0.666667 NA Intergenic Intergenic 100667 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 175.667-38 chr3 149646729 149647119 + 0.666667 NA intron (NM_001348362, intron 5 of 9) L1ME4b|LINE|L1 11101 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 215.5-8 chr18 13239435 13240058 + 0.666667 NA non-coding (NR_146617, exon 1 of 1) non-coding (NR_146617, exon 1 of 1) 203 NR_146617 147276 Hs.675872 NR_146617 ENSG00000279020 C18orf15 HsT3231 chromosome 18 open reading frame 15 (putative) ncRNA 280.5-3 chr10 63712296 63712875 + 0.666667 NA Intergenic Intergenic -190695 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 284-13 chr18 36129389 36129870 + 0.666667 NA promoter-TSS (NM_001324468) promoter-TSS (NM_001324468) -235 NM_001099406 25800 Hs.79136 NM_012319 ENSG00000141424 SLC39A6 LIV-1|ZIP6 solute carrier family 39 member 6 protein-coding 194.333-5 chr1 93122300 93122808 + 0.666667 NA intron (NM_007358, intron 9 of 14) intron (NM_007358, intron 9 of 14) 43271 NM_007358 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 213.334-15 chr8 84723272 84724165 + 0.666667 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 17791 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 179.5-32 chr3 110939275 110939674 + 0.666667 NA Intergenic Intergenic 130485 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 203.667-16 chr13 39041282 39041652 + 0.666667 NA intron (NM_001017370, intron 3 of 5) intron (NM_001017370, intron 3 of 5) 3011 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 164.667-54 chr8 139173726 139174130 + 0.666667 NA Intergenic Intergenic -259887 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 198.5-3 chr1 116553621 116554074 + 0.666667 NA intron (NM_001779, intron 1 of 5) L2c|LINE|L2 6264 NR_039621 100616384 NR_039621 ENSG00000264419 MIR548AC - microRNA 548ac ncRNA 218.167-9 chr14 60490227 60490599 + 0.666667 NA Intergenic AluJo|SINE|Alu -4350 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 164.667-44 chr5 86460225 86460598 + 0.666667 NA Intergenic LTR2|LTR|ERV1 -157530 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 188.667-7 chr11 35087123 35087434 + 0.666667 NA Intergenic MER117|DNA|hAT-Charlie 50754 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 201.667-37 chr3 58016003 58016491 + 0.666667 NA intron (NM_001164318, intron 1 of 45) AluSq|SINE|Alu 7825 NM_001164317 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 173.5-56 chr9 134858510 134858807 + 0.666667 NA intron (NR_103451, intron 1 of 1) intron (NR_103451, intron 1 of 1) -7851 NR_039696 100616212 NR_039696 ENSG00000266514 MIR3689F mir-3689f microRNA 3689f ncRNA 188.333-29 chr3 11453278 11453671 + 0.666667 NA intron (NM_001349238, intron 17 of 17) intron (NM_001349238, intron 17 of 17) 115324 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 194-12 chr11 112293805 112294322 + 0.666667 NA intron (NR_126004, intron 2 of 3) intron (NR_126004, intron 2 of 3) 23314 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 181-30 chr3 28853972 28854325 + 0.666667 NA Intergenic Intergenic 278870 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 185.167-16 chr2 63815537 63815927 + 0.666667 NA Intergenic Intergenic -25232 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 172.333-54 chr8 139142416 139142751 + 0.666667 NA Intergenic Intergenic -228542 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 290.167-16 chr6 149750005 149750519 + 0.666667 NA intron (NM_001252051, intron 1 of 6) intron (NM_001252051, intron 1 of 6) 521 NM_001360452 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 220.167-23 chr4 147341701 147342155 + 0.666667 NA Intergenic Intergenic 2789 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 176.667-6 chr10 17474854 17475219 + 0.666667 NA Intergenic Intergenic -20441 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 175.667-45 chr6 50060916 50061421 + 0.666667 NA Intergenic Intergenic -11239 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 198.667-12 chr14 52264451 52264843 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR -3051 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 189-53 chr7 47421883 47422222 + 0.666667 NA intron (NM_022748, intron 10 of 30) intron (NM_022748, intron 10 of 30) 42751 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 230-31 chr4 33221317 33221808 + 0.666667 NA Intergenic AluY|SINE|Alu 818331 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 187.333-37 chr6 111432597 111432939 + 0.666667 NA intron (NM_002912, intron 2 of 32) L1MA4|LINE|L1 -50704 NR_034110 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA 193.667-42 chr4 95710746 95711391 + 0.666667 NA Intergenic L1PA7|LINE|L1 -129025 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 228.167-25 chr7 1593291 1593735 + 0.666667 NA Intergenic Intergenic -20957 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 282.333-6 chr2 44369993 44370782 + 0.666667 NA intron (NM_024766, intron 1 of 10) L1MEg1|LINE|L1 8440 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 282.167-6 chr15 57874670 57875145 + 0.666667 NA Intergenic L1M3f|LINE|L1 139116 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 215-6 chr10 113380029 113380502 + 0.666667 NA Intergenic Charlie4z|DNA|hAT-Charlie -170566 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 241-6 chr14 72234687 72235184 + 0.666667 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -281885 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 185.333-10 chr11 121236307 121236650 + 0.666667 NA Intergenic AluJr|SINE|Alu -56293 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 178-14 chr17 65285884 65286213 + 0.666667 NA Intergenic L2a|LINE|L2 148678 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 165.667-17 chr14 58910004 58910407 + 0.666667 NA intron (NR_110547, intron 2 of 5) intron (NR_110547, intron 2 of 5) 81917 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 164.5-45 chr6 53893936 53894294 + 0.666667 NA intron (NM_018214, intron 4 of 13) intron (NM_018214, intron 4 of 13) -35867 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 167.833-43 chr7 88684724 88684976 + 0.666667 NA Intergenic AluSg|SINE|Alu -74850 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 164.333-49 chr7 117844294 117844689 + 0.666667 NA intron (NM_001363351, intron 2 of 22) L2a|LINE|L2 27729 NM_001363349 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 190.666 chr1 226062710 226063268 + 0.666667 NA intron (NM_002107, intron 1 of 3) CpG 262 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 184-7 chr10 44297671 44298210 + 0.666667 NA Intergenic L1M5|LINE|L1 5190 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 170-9 chr11 59754876 59755324 + 0.666667 NA promoter-TSS (NM_004177) promoter-TSS (NM_004177) -276 NM_004177 6809 Hs.180711 NM_004177 ENSG00000166900 STX3 STX3A syntaxin 3 protein-coding 168.167-18 chr2 70660789 70661063 + 0.666667 NA 3' UTR (NM_017488, exon 17 of 17) 3' UTR (NM_017488, exon 17 of 17) 106789 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 220.5-23 chr2 128167322 128167831 + 0.666667 NA intron (NR_027671, intron 26 of 40) MER5A1|DNA|hAT-Charlie 76376 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 272.333-12 chr5 91204349 91204775 + 0.666667 NA Intergenic L1MB3|LINE|L1 109840 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 211-46 chr8 117341615 117341968 + 0.666667 NA Intergenic Intergenic -178922 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 166.5-38 chr6 134151689 134152107 + 0.666667 NA Intergenic THE1A-int|LTR|ERVL-MaLR 22968 NM_001291995 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 236.667-6 chr11 78416521 78417037 + 0.666667 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 1041 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 254-2 chr1 113225935 113226376 + 0.666667 NA Intergenic Intergenic -19902 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 165.667-7 chr10 60711773 60712239 + 0.666667 NA intron (NM_001204403, intron 1 of 43) L1MCa|LINE|L1 21522 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 166.5-31 chr5 73600578 73600901 + 0.666667 NA Intergenic L1MC2|LINE|L1 -25419 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 195.667-22 chr2 49461914 49462374 + 0.666667 NA Intergenic L1M1|LINE|L1 -307617 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 240.833-3 chr11 113806593 113807035 + 0.666667 NA intron (NM_001346268, intron 14 of 20) intron (NM_001346268, intron 14 of 20) 27018 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 169.333-38 chr2 224148979 224149254 + 0.666667 NA Intergenic Intergenic -109797 NM_001136528 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 176.5-24 chr3 42652860 42653182 + 0.666667 NA promoter-TSS (NM_145166) promoter-TSS (NM_145166) -676 NM_145166 92999 Hs.409561 NM_145166 ENSG00000114853 ZBTB47 ZNF651 zinc finger and BTB domain containing 47 protein-coding 242-3 chr1 115972680 115973236 + 0.666667 NA intron (NR_125970, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR -3555 NM_018420 55356 Hs.125482 NM_018420 ENSG00000163393 SLC22A15 FLIPT1|PRO34686 solute carrier family 22 member 15 protein-coding 246.667-9 chr17 65940550 65941082 + 0.666667 NA intron (NM_001353129, intron 18 of 26) L1MA7|LINE|L1 -114273 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 195.667-21 chr2 27322657 27323074 + 0.666667 NA intron (NM_002437, intron 1 of 7) intron (NM_002437, intron 1 of 7) 232 NM_002437 4358 Hs.75659 NM_002437 ENSG00000115204 MPV17 CMT2EE|MTDPS6|SYM1 mitochondrial inner membrane protein MPV17 protein-coding 164.667-19 chr16 13925356 13925737 + 0.666667 NA intron (NM_005236, intron 2 of 10) intron (NM_005236, intron 2 of 10) 5389 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 177.667-34 chr4 122518777 122519118 + 0.666667 NA Intergenic L1MA1|LINE|L1 -62452 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 216.333-7 chr10 72778354 72778800 + 0.666667 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 57548 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 274.333-9 chr14 45402863 45403327 + 0.666667 NA Intergenic L2c|LINE|L2 -149893 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 188.333-2 chr1 74246169 74246657 + 0.666667 NA intron (NM_015978, intron 2 of 24) intron (NM_015978, intron 2 of 24) 11026 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 188-29 chr2 127591223 127591614 + 0.666667 NA intron (NM_001080527, intron 16 of 46) intron (NM_001080527, intron 16 of 46) -20456 NR_132317 105373609 Hs.677195 NR_132317 LOC105373609 - uncharacterized LOC105373609 ncRNA 244-42 chr9 92139658 92140078 + 0.666667 NA Intergenic Intergenic -1599 NR_027341 158314 Hs.149940 NR_027341 LINC00475 C9orf44 long intergenic non-protein coding RNA 475 ncRNA 217.333-13 chr15 59105741 59106081 + 0.666667 NA intron (NM_004701, intron 1 of 8) intron (NM_004701, intron 1 of 8) 765 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 190.833-10 chr12 113677485 113677960 + 0.666667 NA Intergenic L2b|LINE|L2 95961 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 169.667-5 chr1 172933512 172933963 + 0.666667 NA Intergenic AluY|SINE|Alu 117226 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 170.667-2 chr1 194701633 194701938 + 0.666667 NA Intergenic Intergenic 1386930 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 203.333-35 chr22 45645735 45646044 + 0.666667 NA Intergenic CpG -25909 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 179.333-3 chr1 211590342 211590831 + 0.666667 NA Intergenic L1MC4|LINE|L1 -11425 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 269-20 chr3 151328258 151328859 + 0.666667 NA exon (NM_176894, exon 2 of 2) exon (NM_176894, exon 2 of 2) 991 NM_176894 53829 Hs.546396 NM_023914 ENSG00000181631 P2RY13 FKSG77|GPCR1|GPR86|GPR94|P2Y13|SP174 purinergic receptor P2Y13 protein-coding 340.333-10 chr2 138090140 138090784 + 0.666667 NA Intergenic Intergenic -11422 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 218.167-21 chr4 142583124 142583688 + 0.666667 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 263129 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 236.333-30 chr7 26511045 26511715 + 0.666667 NA intron (NR_148500, intron 5 of 5) L1ME2|LINE|L1 27445 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 172.833-22 chr4 103996436 103996901 + 0.666667 NA Intergenic Intergenic -276683 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 192.5-29 chr3 34778920 34779321 + 0.666667 NA Intergenic L1ME3|LINE|L1 614903 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 206.833-23 chr7 131699790 131700200 + 0.666667 NA Intergenic MIR|SINE|MIR -143367 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 183.667-57 chr8 72640359 72640716 + 0.666667 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -91508 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 170.667-3 chr1 224511523 224511858 + 0.666667 NA intron (NM_001322302, intron 2 of 6) AluJr|SINE|Alu 76841 NM_001322304 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 181.667-7 chr10 59389607 59390041 + 0.666667 NA Intergenic L4_A_Mam|LINE|RTE-X -26643 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 205.667-23 chr20 35305533 35305919 + 0.666667 NA intron (NM_001184977, intron 7 of 7) intron (NM_001184977, intron 7 of 7) -13301 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 190-22 chr15 80903739 80904086 + 0.666667 NA intron (NM_001293304, intron 12 of 29) intron (NM_001293304, intron 12 of 29) -61839 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 217.167-15 chr18 13364963 13365617 + 0.666667 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 62244 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 300.667-7 chr19 4575534 4576137 + 0.666667 NA Intergenic MIRb|SINE|MIR -16151 NM_032108 10501 Hs.465642 NM_020241 ENSG00000167680 SEMA6B SEM-SEMA-Y|SEMA-VIB|SEMAN|semaZ semaphorin 6B protein-coding 247.5-43 chr7 49104224 49104813 + 0.666667 NA Intergenic Intergenic 179971 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 180.5-43 chr8 14581424 14581719 + 0.666667 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 271939 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 201.667-43 chr5 29875583 29876250 + 0.666667 NA Intergenic Intergenic -4644 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 269.333-13 chr2 237221867 237222301 + 0.666667 NA Intergenic Intergenic 136195 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 204-28 chr3 40796319 40796746 + 0.666667 NA Intergenic MamGypsy2-I|LTR|Gypsy 271572 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 199.333-45 chr7 130986888 130987282 + 0.666667 NA intron (NR_109855, intron 2 of 4) L2a|LINE|L2 73621 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 167.5-30 chr4 58865215 58865507 + 0.666667 NA Intergenic L1M4|LINE|L1 -118921 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 327.167-8 chr5 147951009 147951864 + 0.666667 NA Intergenic L1MA7|LINE|L1 -44898 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 191.667-39 chr6 36349080 36349664 + 0.666667 NA Intergenic LTR83|LTR|ERVL -12484 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 207.333-20 chr18 4039801 4040280 + 0.666667 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 77687 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 192.333-38 chr4 110031895 110032384 + 0.666667 NA Intergenic Intergenic 119256 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 180.5-27 chr4 1258683 1258986 + 0.666667 NA Intergenic AluJb|SINE|Alu 9394 NR_033339 92070 Hs.561314 NM_052861 CTBP1-DT C4orf42|CTBP1-AS1|CTBP1-AS2 CTBP1 divergent transcript ncRNA 209.333-33 chr5 107207162 107207768 + 0.666667 NA Intergenic Intergenic -196451 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 338.5-12 chr6 169172865 169173529 + 0.666667 NA Intergenic MIRc|SINE|MIR 9543 NR_125863 101929504 Hs.147721 NR_125863 ENSG00000261039 LINC02544 - long intergenic non-protein coding RNA 2544 ncRNA 220.667-33 chr5 150299224 150299581 + 0.666667 NA intron (NM_001012301, intron 1 of 1) L2c|LINE|L2 3503 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 217.333-46 chr8 140067194 140067789 + 0.666667 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 33044 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 239.333-23 chr4 62784813 62785226 + 0.666667 NA Intergenic MER63C|DNA|hAT-Blackjack -623254 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 177.5-38 chr3 166686699 166687184 + 0.666667 NA Intergenic HERV16-int|LTR|ERVL -211742 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 202-22 chr20 31881884 31882298 + 0.666667 NA intron (NR_160277, intron 1 of 12) intron (NR_160277, intron 1 of 12) 2274 NR_160276 164395 Hs.712915 NM_001008409 ENSG00000131044 TTLL9 C20orf125 tubulin tyrosine ligase like 9 protein-coding 208.667-42 chr6 141824019 141824435 + 0.666667 NA Intergenic MER77|LTR|ERVL 264572 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 165-2 chr1 178207630 178208056 + 0.666667 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 113739 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 216.667-43 chr6 17447855 17448432 + 0.666667 NA intron (NM_001363534, intron 3 of 11) intron (NM_001363534, intron 3 of 11) 54548 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 217.167-33 chr8 99996651 99997121 + 0.666667 NA intron (NM_015668, intron 19 of 27) intron (NM_015668, intron 19 of 27) -7696 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 163.667-27 chr2 62453778 62454081 + 0.666667 NA Intergenic Intergenic 52266 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 204.833-9 chr14 65672661 65673044 + 0.666667 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 201750 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 268.333-2 chr10 88693168 88693835 + 0.666667 NA Intergenic Intergenic 29059 NM_004190 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 229.667-40 chr7 3307044 3307551 + 0.666667 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 6045 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 190.333-6 chr10 68339514 68339997 + 0.666667 NA intron (NM_001322437, intron 6 of 9) AluYh3|SINE|Alu -6827 NM_022129 64081 Hs.198158 NM_022129 ENSG00000108187 PBLD HEL-S-306|MAWBP|MAWDBP phenazine biosynthesis like protein domain containing protein-coding 279-8 chr13 50206881 50207647 + 0.666667 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 35246 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 196-24 chr2 151328382 151328835 + 0.666667 NA Intergenic AluSx1|SINE|Alu -28984 NM_007115 7130 Hs.437322 NM_007115 ENSG00000123610 TNFAIP6 TSG-6|TSG6 TNF alpha induced protein 6 protein-coding 163.167-2 chr1 32655177 32655699 + 0.666667 NA intron (NM_005610, intron 2 of 11) intron (NM_005610, intron 2 of 11) 4080 NM_001135256 5928 Hs.16003 NM_005610 ENSG00000162521 RBBP4 NURF55|RBAP48|lin-53 RB binding protein 4, chromatin remodeling factor protein-coding 194.5-10 chr10 125100472 125100893 + 0.666667 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) 58095 NM_001321014 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 167-41 chr8 30480044 30480650 + 0.666667 NA intron (NM_001008710, intron 4 of 8) intron (NM_001008710, intron 4 of 8) -94946 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 226.334-10 chr9 97048291 97048826 + 0.666667 NA Intergenic AluSq2|SINE|Alu -8915 NM_001201575 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 169.167-6 chr1 237956127 237956445 + 0.666667 NA Intergenic Charlie4z|DNA|hAT-Charlie -65364 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 189.167-18 chr15 99925936 99926357 + 0.666667 NA Intergenic Intergenic 119123 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 172.834-2 chr3 176651754 176652307 + 0.666667 NA Intergenic MER4B-int|LTR|ERV1 -16498 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 173.5-42 chr4 45423419 45423793 + 0.666667 NA Intergenic L1PB1|LINE|L1 -696972 NM_001270881 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 226.833-5 chr11 305075 305582 + 0.666667 NA Intergenic FLAM_C|SINE|Alu -2779 NM_006435 10581 Hs.709321 NM_006435 ENSG00000185201 IFITM2 1-8D|DSPA2c interferon induced transmembrane protein 2 protein-coding 195.833-5 chr11 21976416 21976791 + 0.666667 NA Intergenic LTR1D|LTR|ERV1 -216482 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 207-24 chr5 123621931 123622495 + 0.666667 NA Intergenic L1MA3|LINE|L1 76796 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 239.334-12 chr6 52018789 52019456 + 0.666667 NA intron (NM_138694, intron 33 of 66) intron (NM_138694, intron 33 of 66) 68491 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 164.167-10 chr11 110097194 110097757 + 0.666667 NA intron (NM_033390, intron 1 of 5) intron (NM_033390, intron 1 of 5) 4083 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 163.333-37 chr22 24748826 24749101 + 0.666667 NA non-coding (NR_045648, exon 13 of 22) non-coding (NR_045648, exon 13 of 22) -15538 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 177.5-5 chr1 230798031 230798341 + 0.666667 NA exon (NM_006615, exon 19 of 20) exon (NM_006615, exon 19 of 20) 50798 NM_006615 10753 Hs.498021 NM_006615 ENSG00000135773 CAPN9 GC36|nCL-4 calpain 9 protein-coding 200.167-5 chr1 205562899 205563409 + 0.666667 NA intron (NR_152721, intron 1 of 3) MIRb|SINE|MIR -5860 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 164.5-47 chr6 87155271 87155568 + 0.666667 NA promoter-TSS (NM_001351444) promoter-TSS (NM_001351444) -146 NM_015021 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 193.167-2 chr1 155446237 155446664 + 0.666667 NA intron (NM_018489, intron 4 of 27) AluJb|SINE|Alu 13270 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 176.667-5 chr1 150463672 150464056 + 0.666667 NA intron (NM_015203, intron 9 of 10) FLAM_C|SINE|Alu -23555 NM_001271896 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 181.5-46 chr6 139710742 139711208 + 0.666667 NA Intergenic Intergenic -60098 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 200.5-35 chr5 33788970 33789412 + 0.666667 NA intron (NM_001324511, intron 2 of 2) intron (NM_001324511, intron 2 of 2) 102799 NM_001324512 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 233.667-7 chr11 84962344 84962833 + 0.666667 NA intron (NM_001351274, intron 5 of 26) L2b|LINE|L2 -39167 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 165.833-37 chr8 111379156 111379616 + 0.666667 NA intron (NR_146282, intron 1 of 3) L1M5|LINE|L1 2747 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 246.333-33 chr5 156329355 156329894 + 0.666667 NA intron (NM_172244, intron 2 of 7) intron (NM_172244, intron 2 of 7) 2460 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 203.667-59 chr9 36954920 36955272 + 0.666667 NA intron (NR_104000, intron 6 of 9) L1MEd|LINE|L1 -61565 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 243-4 chr10 112584942 112585532 + 0.666667 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -48933 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 185.333-9 chr11 114391571 114392107 + 0.666667 NA intron (NM_019021, intron 1 of 1) L1ME3C|LINE|L1 8672 NM_019021 54494 Hs.715083 NM_019021 ENSG00000180425 C11orf71 URLC7 chromosome 11 open reading frame 71 protein-coding 204-24 chr21 30197959 30198545 + 0.666667 NA Intergenic L1MA5|LINE|L1 13531 NR_038855 266919 Hs.561028 NR_038855 ENSG00000227342 LINC00307 D21S2091E|NCRNA00307 long intergenic non-protein coding RNA 307 ncRNA 281.667-13 chr2 197867282 197867819 + 0.666667 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 62957 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 194.5-41 chr4 185503005 185503647 + 0.666667 NA intron (NM_001114107, intron 6 of 6) intron (NM_001114107, intron 6 of 6) -31593 NM_001145411 256309 Hs.41101 NM_152775 ENSG00000168491 CCDC110 CT52|KM-HN-1|KMHN1 coiled-coil domain containing 110 protein-coding 176.667-10 chr11 95222435 95222853 + 0.666667 NA intron (NM_001271594, intron 1 of 8) L2c|LINE|L2 -7542 NR_110295 100129203 Hs.191599 NR_110295 LOC100129203 - uncharacterized LOC100129203 ncRNA 170.5-15 chr16 3759755 3760117 + 0.666667 NA intron (NM_004380, intron 16 of 30) intron (NM_004380, intron 16 of 30) -42412 NM_016292 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 164-42 chr21 31689235 31689481 + 0.666667 NA intron (NM_020706, intron 15 of 19) AluSx1|SINE|Alu 29736 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 170.667-40 chr6 37950075 37950360 + 0.666667 NA intron (NM_021943, intron 2 of 5) L1PA15|LINE|L1 130490 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 209.5-8 chr12 87995841 87996198 + 0.666667 NA intron (NM_001363616, intron 6 of 11) intron (NM_001363616, intron 6 of 11) 33382 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 244.5-23 chr20 19096542 19097079 + 0.666667 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -115832 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 163.333-38 chr3 18506808 18507330 + 0.666667 NA intron (NR_125803, intron 4 of 6) intron (NR_125803, intron 4 of 6) -61477 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 201.333-23 chr2 69875173 69875531 + 0.666667 NA intron (NM_178439, intron 13 of 13) L1ME4a|LINE|L1 -18604 NR_037862 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 201.667-53 chr8 75004349 75004722 + 0.666667 NA intron (NM_001286778, intron 1 of 13) intron (NM_001286778, intron 1 of 13) 4380 NM_001286777 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 255.167-25 chr4 7787089 7787572 + 0.666667 NA intron (NM_198595, intron 11 of 16) MER21C|LTR|ERVL 33240 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 284.334 chr12 95819601 95820639 + 0.666667 NA intron (NR_135016, intron 1 of 1) MER103C|DNA|hAT-Charlie 17023 NR_135016 105369920 Hs.145556 NR_135016 ENSG00000258292 LINC02410 - long intergenic non-protein coding RNA 2410 ncRNA 164.667-26 chr2 123740643 123741088 + 0.666667 NA Intergenic Intergenic 284309 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 175.333-38 chr3 55144452 55144887 + 0.666667 NA Intergenic Intergenic -33503 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 173.667-6 chr10 71871516 71872151 + 0.666667 NA Intergenic AluJb|SINE|Alu -20582 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 196.5-27 chr22 35293342 35293776 + 0.666667 NA intron (NM_001003681, intron 10 of 10) intron (NM_001003681, intron 10 of 10) -5716 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 274-35 chr8 90332518 90333100 + 0.666667 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 111321 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 224-8 chr12 41559609 41559962 + 0.666667 NA intron (NM_001164595, intron 7 of 9) THE1C|LTR|ERVL-MaLR 122046 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 168-12 chr11 91841206 91841606 + 0.666667 NA Intergenic Intergenic -383628 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 169-37 chr3 64674506 64675066 + 0.666667 NA intron (NM_001318781, intron 3 of 38) intron (NM_001318781, intron 3 of 38) -10084 NR_038264 100507098 Hs.660881 NR_038264 ENSG00000241684 ADAMTS9-AS2 - ADAMTS9 antisense RNA 2 ncRNA 173-28 chr21 14852606 14853150 + 0.666667 NA intron (NR_146322, intron 2 of 3) intron (NR_146322, intron 2 of 3) 65790 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 187-18 chr2 75662807 75663221 + 0.666667 NA TTS (NM_014763) TTS (NM_014763) 16231 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 170-31 chr2 48621827 48622181 + 0.666667 NA intron (NM_001198594, intron 4 of 7) intron (NM_001198594, intron 4 of 7) 4148 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 216.167-25 chr7 77793947 77794487 + 0.666667 NA exon (NM_032936, exon 2 of 2) exon (NM_032936, exon 2 of 2) 4217 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 210-24 chr2 181945902 181946390 + 0.666667 NA Intergenic Intergenic -8095 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 175.667-44 chr6 41766582 41767047 + 0.666667 NA Intergenic Intergenic 13086 NM_006653 10817 Hs.194208 NM_006653 ENSG00000137218 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 163.333-40 chr3 111735098 111735461 + 0.666667 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 2783 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 196.333-29 chr3 14033981 14034348 + 0.666667 NA intron (NR_002223, intron 1 of 2) L1PREC2|LINE|L1 90706 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 180.5-23 chr3 48098260 48098530 + 0.666667 NA Intergenic MIR3|SINE|MIR -9547 NM_001134364 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 164.667-2 chr1 52397646 52397914 + 0.666667 NA exon (NM_001190819, exon 4 of 17) exon (NM_001190819, exon 4 of 17) 6643 NM_004153 4998 Hs.17908 NM_004153 ENSG00000085840 ORC1 HSORC1|ORC1L|PARC1 origin recognition complex subunit 1 protein-coding 185.833-6 chr13 92373842 92374179 + 0.666667 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -21803 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 212.333-33 chr7 93165647 93166006 + 0.666667 NA Intergenic MER57E1|LTR|ERV1 -17441 NM_001303497 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 171.333-58 chr9 121462787 121463181 + 0.666667 NA intron (NR_045211, intron 3 of 5) L4_C_Mam|LINE|RTE-X 37043 NR_045211 2681 Hs.97469 NR_003191 ENSG00000204136 GGTA1P GGTA|GGTA1|GLYT2|a1/3GTP glycoprotein alpha-galactosyltransferase 1, pseudogene pseudo 204-7 chr10 23352124 23352613 + 0.666667 NA Intergenic Intergenic -7571 NM_001365862 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552 chromosome 10 open reading frame 67 protein-coding 200.5-4 chr11 85628104 85628493 + 0.666667 NA promoter-TSS (NM_001193538) promoter-TSS (NM_001193538) 39 NM_001351275 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 216.667-5 chr10 61458927 61459252 + 0.666667 NA intron (NR_120643, intron 1 of 5) intron (NR_120643, intron 1 of 5) -5708 NR_134507 219623 Hs.623955 NM_178505 ENSG00000196932 TMEM26 - transmembrane protein 26 protein-coding 197.333-20 chr20 5364349 5364823 + 0.666667 NA Intergenic Intergenic -47854 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 311.5-14 chr4 66928233 66928862 + 0.666667 NA Intergenic Intergenic 493453 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 197-18 chr2 212683590 212684010 + 0.666667 NA Intergenic L2a|LINE|L2 -111531 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 179-22 chr2 133932382 133932906 + 0.666667 NA Intergenic L1ME3A|LINE|L1 -187291 NM_001371457 302.833-4 chr12 1114206 1114996 + 0.666667 NA intron (NM_001301248, intron 5 of 18) intron (NM_001301248, intron 5 of 18) 86853 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 210.833-24 chr5 128213025 128213398 + 0.666667 NA Intergenic Intergenic 129445 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 165.833-24 chr2 116309800 116310157 + 0.666667 NA Intergenic L1MA6|LINE|L1 966163 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 242.833-23 chr8 135819995 135820421 + 0.666667 NA Intergenic Intergenic 362752 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 228-20 chr16 62285097 62285658 + 0.666667 NA Intergenic Intergenic -248939 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 272.667-23 chr9 14629195 14629937 + 0.666667 NA intron (NR_148717, intron 9 of 11) Tigger1|DNA|TcMar-Tigger 63866 NR_148717 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 185.5-27 chr3 78315406 78315900 + 0.666667 NA Intergenic Intergenic -266690 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 215.333-4 chr1 161726166 161726602 + 0.666667 NA intron (NM_001288829, intron 4 of 5) CpG 3731 NM_001288830 127943 Hs.517422 NM_001002901 ENSG00000162746 FCRLB FCRL2|FCRLM2|FCRLY|FREB-2|FREB2|FcRY Fc receptor like B protein-coding 225.5-17 chr21 44346971 44347388 + 0.666667 NA Intergenic MSTA|LTR|ERVL-MaLR -6422 NM_003307 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 204-18 chr17 61372660 61373218 + 0.666667 NA intron (NM_001099432, intron 24 of 24) intron (NM_001099432, intron 24 of 24) -5235 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 165-21 chr16 61875144 61875523 + 0.666667 NA intron (NM_001796, intron 3 of 11) MER5A|DNA|hAT-Charlie 161105 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 186-20 chr19 28507241 28507714 + 0.666667 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -99211 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 182.333-10 chr17 14617935 14618392 + 0.666667 NA Intergenic Intergenic 314423 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 285.833-7 chr14 84665237 84665760 + 0.666667 NA Intergenic L1PB1|LINE|L1 -606434 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 185.5-34 chr5 145360355 145360869 + 0.666667 NA Intergenic Intergenic 474730 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 188.667-6 chr11 29757911 29758364 + 0.666667 NA Intergenic L2a|LINE|L2 139335 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 182.5-37 chr7 11634228 11634509 + 0.666667 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 197830 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 194.167-30 chr5 139097387 139097796 + 0.666667 NA intron (NM_022464, intron 3 of 9) AluSx4|SINE|Alu 100777 NM_022464 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 216.833-16 chr2 184709190 184709850 + 0.666667 NA intron (NM_194250, intron 1 of 3) L3|LINE|CR1 110991 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 312.667-21 chr6 132488777 132489638 + 0.666667 NA intron (NM_001326579, intron 2 of 9) AluSz6|SINE|Alu 23576 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 210.667-43 chr6 130046693 130047365 + 0.666667 NA intron (NM_001007102, intron 3 of 21) intron (NM_001007102, intron 3 of 21) 27385 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 180-31 chr19 6148463 6148958 + 0.666667 NA intron (NM_030924, intron 3 of 14) intron (NM_030924, intron 3 of 14) 13043 NM_001289177 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 189.667-52 chr7 123758948 123759346 + 0.666667 NA Intergenic Charlie7|DNA|hAT-Charlie -10144 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB WASP like actin nucleation promoting factor protein-coding 238.333-17 chr14 73880438 73881143 + 0.666667 NA intron (NM_001371328, intron 6 of 8) MLT1K|LTR|ERVL-MaLR -6069 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 251.333-24 chr7 28247604 28248143 + 0.666667 NA Intergenic L1MB8|LINE|L1 -51448 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 171.667-50 chr5 148935194 148935699 + 0.666667 NA Intergenic Intergenic 108853 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 206-19 chr19 33245845 33246448 + 0.666667 NA Intergenic Intergenic -20296 NM_019849 56301 Hs.58679 NM_019849 ENSG00000130876 SLC7A10 ASC1|HASC-1|asc-1 solute carrier family 7 member 10 protein-coding 190.667-36 chr3 18073140 18073529 + 0.666667 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 110782 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 202.833-14 chr2 218857481 218857830 + 0.666667 NA Intergenic G-rich|Low_complexity|Low_complexity -2150 NM_006522 7475 Hs.29764 NM_006522 ENSG00000115596 WNT6 - Wnt family member 6 protein-coding 209.667-25 chr3 29549529 29549867 + 0.666667 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 268386 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 163.333-27 chr18 56565595 56566010 + 0.666667 NA Intergenic Intergenic 72790 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 190-8 chr10 125522325 125522689 + 0.666667 NA Intergenic Intergenic -51864 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 213.667-11 chr15 85809812 85810410 + 0.666667 NA Intergenic MER44B|DNA|TcMar-Tigger -15186 NM_022480 64410 Hs.498371 NM_022480 ENSG00000183655 KLHL25 ENC-2|ENC2 kelch like family member 25 protein-coding 195-49 chr9 88172439 88172871 + 0.666667 NA Intergenic AluSx|SINE|Alu -34174 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 245.5-10 chr13 99500433 99501015 + 0.666667 NA promoter-TSS (NM_004800) promoter-TSS (NM_004800) 339 NR_133664 106478991 NR_133664 ENSG00000203441 LINC00449 - long intergenic non-protein coding RNA 449 ncRNA 187-45 chr8 42572898 42573294 + 0.666667 NA Intergenic Intergenic -31142 NM_006749 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 262.667-7 chr1 170023186 170023670 + 0.666667 NA intron (NM_014970, intron 9 of 19) intron (NM_014970, intron 9 of 19) 45487 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 266.5-8 chr12 80238227 80238681 + 0.666667 NA intron (NM_001368062, intron 14 of 62) intron (NM_001368062, intron 14 of 62) 29001 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 193.333-2 chr1 115282185 115282760 + 0.666667 NA promoter-TSS (NR_157569) promoter-TSS (NR_157569) -562 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 200.667-23 chr18 80152239 80152654 + 0.666667 NA intron (NR_028340, intron 1 of 2) L1PB4|LINE|L1 4522 NR_028339 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 178.167-10 chr16 89025974 89026388 + 0.666667 NA Intergenic Intergenic -48974 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 208.667-27 chr2 146312999 146313455 + 0.666667 NA Intergenic Intergenic -273830 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 170.667-16 chr17 59227308 59227740 + 0.666667 NA intron (NM_182569, intron 1 of 9) intron (NM_182569, intron 1 of 9) 7013 NM_182569 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 203.833-17 chr4 32922375 32922978 + 0.666667 NA Intergenic MER53|DNA|hAT 571638 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 193.333-21 chr15 65015859 65016226 + 0.666667 NA intron (NM_139242, intron 6 of 8) intron (NM_139242, intron 6 of 8) 13597 NM_139242 123263 Hs.531615 NM_139242 ENSG00000103707 MTFMT COXPD15|FMT1|MC1DN27 mitochondrial methionyl-tRNA formyltransferase protein-coding 183-48 chr9 5514293 5514617 + 0.666667 NA intron (NM_025239, intron 1 of 6) intron (NM_025239, intron 1 of 6) 3924 NM_025239 80380 Hs.532279 NM_025239 ENSG00000197646 PDCD1LG2 B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2 programmed cell death 1 ligand 2 protein-coding 200.667-2 chr1 227448708 227449285 + 0.666667 NA Intergenic Intergenic -114560 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 165.167-43 chr6 77465682 77466160 + 0.666667 NA Intergenic Intergenic -1899 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 180-23 chr15 74196157 74196647 + 0.666667 NA intron (NM_001142618, intron 4 of 18) intron (NM_001142618, intron 4 of 18) 6385 NM_022369 64220 Hs.24553 NM_022369 ENSG00000137868 STRA6 MCOPCB8|MCOPS9|PP14296 stimulated by retinoic acid 6 protein-coding 206.833-8 chr2 58221785 58222300 + 0.666667 NA exon (NM_018062, exon 5 of 14) exon (NM_018062, exon 5 of 14) 19338 NM_001114636 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 193-16 chr17 48844989 48845518 + 0.666667 NA intron (NM_005831, intron 2 of 12) intron (NM_005831, intron 2 of 12) 14218 NM_005831 10241 Hs.514920 NM_005831 ENSG00000136436 CALCOCO2 NDP52 calcium binding and coiled-coil domain 2 protein-coding 192.667-30 chr5 83095611 83096097 + 0.666667 NA intron (NM_001318012, intron 1 of 7) L1M3a|LINE|L1 18307 NM_022406 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 163.833-3 chr10 57978950 57979431 + 0.666667 NA Intergenic L1MA6|LINE|L1 288704 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 309.5-18 chr6 34027602 34028216 + 0.666667 NA intron (NM_000841, intron 10 of 10) intron (NM_000841, intron 10 of 10) -27858 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 193.333-24 chr17 71053278 71053718 + 0.666667 NA Intergenic Intergenic 148681 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 231-8 chr14 47680215 47680606 + 0.666667 NA Intergenic CR1_Mam|LINE|CR1 -5456 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 171.833-24 chr5 27734400 27734869 + 0.666667 NA Intergenic Intergenic 262342 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 206-37 chr9 69622436 69622823 + 0.666667 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 49742 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 165-10 chr11 36455637 36456036 + 0.666667 NA intron (NM_001160167, intron 8 of 8) intron (NM_001160167, intron 8 of 8) 54436 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 223.333-39 chr6 49446193 49446807 + 0.666667 NA intron (NM_000255, intron 8 of 12) MIR|SINE|MIR 16753 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 215.667-10 chr11 108467242 108467567 + 0.666667 NA intron (NR_147053, intron 1 of 12) intron (NR_147053, intron 1 of 12) 125 NM_001330368 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 198.667-40 chr6 53856021 53856460 + 0.666667 NA intron (NM_018214, intron 2 of 13) intron (NM_018214, intron 2 of 13) 61235 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 229-30 chr9 114154981 114155641 + 0.666667 NA promoter-TSS (NM_032888) promoter-TSS (NM_032888) -226 NM_032888 85301 Hs.494892 NM_032161 ENSG00000196739 COL27A1 STLS collagen type XXVII alpha 1 chain protein-coding 259.5-26 chr4 88218264 88218717 + 0.666667 NA intron (NM_001348985, intron 1 of 16) L1PB1|LINE|L1 13136 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 201.167-2 chr1 161382288 161382738 + 0.666667 NA Intergenic Intergenic -14630 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 170-54 chr7 145908459 145908787 + 0.666667 NA Intergenic Intergenic -865648 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 190-46 chr6 149031863 149032340 + 0.666667 NA intron (NR_134599, intron 1 of 1) intron (NR_134599, intron 1 of 1) 560 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 174-6 chr10 98705337 98705795 + 0.666667 NA intron (NM_021828, intron 5 of 11) L1PA10|LINE|L1 219002 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 209.834-7 chr3 64506368 64506896 + 0.666667 NA Intergenic Intergenic -54714 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 186-21 chr19 39405902 39406364 + 0.666667 NA promoter-TSS (NM_003407) promoter-TSS (NM_003407) -714 NM_003407 7538 Hs.534052 NM_003407 ENSG00000128016 ZFP36 G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36 ZFP36 ring finger protein protein-coding 205.333-16 chr16 87543846 87544289 + 0.666667 NA Intergenic Intergenic 49880 NR_110943 101928737 Hs.579009 NR_110943 ENSG00000260750 LOC101928737 - uncharacterized LOC101928737 ncRNA 213.333-25 chr4 47678445 47678828 + 0.666667 NA intron (NM_001278586, intron 7 of 13) intron (NM_001278586, intron 7 of 13) 25967 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 205.5-36 chr7 64476233 64476930 + 0.666667 NA Intergenic AluSc|SINE|Alu 42888 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 180.666-3 chr19 1266328 1266858 + 0.666667 NA TTS (NR_027271) TTS (NR_027271) -2675 NM_001280 1153 Hs.618145 NM_001280 ENSG00000099622 CIRBP CIRP cold inducible RNA binding protein protein-coding 201.5-6 chr10 96001317 96001728 + 0.666667 NA intron (NM_001159747, intron 2 of 11) intron (NM_001159747, intron 2 of 11) 1431 NM_001159747 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 235-31 chr7 29113531 29114051 + 0.666667 NA intron (NM_001371256, intron 6 of 16) intron (NM_001371256, intron 6 of 16) -11242 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 166.667-4 chr10 5759051 5759400 + 0.666667 NA intron (NM_017782, intron 18 of 20) intron (NM_017782, intron 18 of 20) 54209 NM_001494 2665 Hs.299055 NM_001494 ENSG00000057608 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 253.667-20 chr17 19608792 19609263 + 0.666667 NA Intergenic L1M4|LINE|L1 -39123 NM_001369146 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 196.333-28 chr20 43762889 43763364 + 0.666667 NA Intergenic Intergenic -36124 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 170.667-47 chr7 96314162 96314536 + 0.666667 NA intron (NM_001160210, intron 1 of 17) intron (NM_001160210, intron 1 of 17) 7749 NR_027662 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 189.333-14 chr13 95006984 95007408 + 0.666667 NA Intergenic Intergenic 47155 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 195-41 chr6 74751960 74752473 + 0.666667 NA Intergenic THE1D|LTR|ERVL-MaLR 376566 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 181.833-25 chr6 50381140 50381686 + 0.666667 NA Intergenic Intergenic -331484 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 188.333 chr1 52933742 52934155 + 0.666667 NA intron (NM_001193617, intron 1 of 14) Charlie1a|DNA|hAT-Charlie 6672 NM_002979 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 176.333-9 chr14 41154912 41155242 + 0.666667 NA Intergenic L1ME1|LINE|L1 200366 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 166.5-45 chr9 78994397 78994783 + 0.666667 NA Intergenic Intergenic 151076 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 276.667-16 chr22 45005127 45005694 + 0.666667 NA intron (NM_001284296, intron 2 of 13) intron (NM_001284296, intron 2 of 13) -1791 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 199.333-30 chr2 200498067 200498560 + 0.666667 NA intron (NM_001321550, intron 4 of 6) intron (NM_001321550, intron 4 of 6) 11755 NM_001321548 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 166-19 chr12 65411866 65412417 + 0.666667 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 133154 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 192.667-36 chr7 48412007 48412405 + 0.666667 NA intron (NM_152701, intron 40 of 61) intron (NM_152701, intron 40 of 61) 240748 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 166.333-32 chr2 138554899 138555149 + 0.666667 NA intron (NM_001001664, intron 5 of 10) MSTD|LTR|ERVL-MaLR 53254 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 328.333-7 chr4 64030337 64031032 + 0.666667 NA Intergenic L1M1|LINE|L1 378766 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 173.5-30 chr18 1750976 1751386 + 0.666667 NA Intergenic L1MCb|LINE|L1 -391552 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 203.667-15 chr13 26585405 26586131 + 0.666667 NA intron (NM_006646, intron 1 of 9) intron (NM_006646, intron 1 of 9) 28065 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 212.667-31 chr3 39180715 39181209 + 0.666667 NA Intergenic CpG 11633 NM_194293 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 181.5-50 chr7 70002573 70003197 + 0.666667 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 404410 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 187.5-22 chr2 159677719 159678258 + 0.666667 NA Intergenic Intergenic 34454 NR_110586 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 176.667-24 chr2 52083392 52083760 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -287072 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 260-8 chr14 57183498 57184255 + 0.666667 NA Intergenic Intergenic 85029 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 267-28 chr7 53229120 53229630 + 0.666667 NA Intergenic Intergenic 193742 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 170.333-21 chr15 77666436 77666950 + 0.666667 NA intron (NR_120361, intron 1 of 2) MIR|SINE|MIR 6642 NR_120361 101929478 Hs.569510 NR_120361 ENSG00000259281 LINGO1-AS2 - LINGO1 antisense RNA 2 ncRNA 189.834-5 chr8 106577801 106578351 + 0.666667 NA intron (NM_018002, intron 3 of 15) MER53|DNA|hAT -79732 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 190.333-4 chr1 227118880 227119438 + 0.666667 NA intron (NM_001366019, intron 12 of 36) intron (NM_001366019, intron 12 of 36) 178865 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 166.333-3 chr1 150081523 150081863 + 0.666667 NA intron (NR_103998, intron 6 of 13) intron (NR_103998, intron 6 of 13) 13917 NM_001279354 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 190.333-15 chr15 39128018 39128597 + 0.666667 NA Intergenic Intergenic -122362 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 308.5-18 chr4 157035206 157036035 + 0.666667 NA Intergenic Intergenic -40505 NM_001166061 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 171.167-7 chr10 21731654 21732118 + 0.666667 NA intron (NM_001195626, intron 17 of 22) intron (NM_001195626, intron 17 of 22) 197714 NM_001195628 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 169.667-2 chr1 94552199 94552712 + 0.666667 NA Intergenic Intergenic 8753 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 169.333-19 chr12 57327985 57328375 + 0.666667 NA intron (NM_001351217, intron 1 of 21) AluJo|SINE|Alu 13594 NM_001351215 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 204.667-15 chr17 52917490 52917971 + 0.666667 NA Intergenic THE1B|LTR|ERVL-MaLR 55609 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 180-53 chr6 68959069 68959659 + 0.666667 NA intron (NM_001704, intron 8 of 31) intron (NM_001704, intron 8 of 31) 324082 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 201.5-3 chr1 239848535 239848971 + 0.666667 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 51119 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 173-10 chr11 35592083 35592558 + 0.666667 NA Intergenic LTR79|LTR|ERVL -26140 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 173.667-51 chr9 34179760 34180110 + 0.666667 NA intron (NM_001171201, intron 1 of 5) intron (NM_001171201, intron 1 of 5) 892 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 193.667-39 chr4 54155752 54156081 + 0.666667 NA Intergenic MSTB|LTR|ERVL-MaLR 55753 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 238-7 chr13 43873665 43874198 + 0.666667 NA intron (NM_144974, intron 2 of 6) intron (NM_144974, intron 2 of 6) -5247 NM_001128303 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 344.833-11 chr8 117894762 117895933 + 0.666667 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 25566 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 301.167-15 chr5 18377549 18378344 + 0.666667 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 570672 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 192-48 chr8 122191640 122192235 + 0.666667 NA Intergenic Intergenic 376707 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 171.667 chr1 15234960 15235453 + 0.666667 NA Intergenic L1PA16|LINE|L1 -12019 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead associated phosphopeptide binding domain 1 protein-coding 216.833-18 chr3 30747714 30748195 + 0.666667 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 141353 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 204-22 chr20 60908380 60908960 + 0.666667 NA Intergenic L1PA16|LINE|L1 -170394 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 166-48 chr21 31543533 31543837 + 0.666667 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 15402 NM_003253 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 177.667-38 chr6 116931881 116932320 + 0.666667 NA TTS (NM_173560) TTS (NM_173560) 54858 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 226.333-16 chr3 195022698 195023153 + 0.666667 NA Intergenic AluSq2|SINE|Alu -71663 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 191.667-24 chr2 52117956 52118394 + 0.666667 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -252473 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 240.667-18 chr16 76902236 76902608 + 0.666667 NA Intergenic MER58A|DNA|hAT-Charlie 33486 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 201.667-45 chr5 66439974 66440447 + 0.666667 NA Intergenic MLT1F1|LTR|ERVL-MaLR 71394 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 244-12 chr2 60325625 60326003 + 0.666667 NA Intergenic MLT1F|LTR|ERVL-MaLR 57222 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 174.167-6 chr11 132371002 132371405 + 0.666667 NA Intergenic Intergenic 86901 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 169.333-30 chr19 9055164 9055462 + 0.666667 NA Intergenic AluSx1|SINE|Alu -37932 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor family 1 subfamily M member 1 protein-coding 233.667-5 chr10 122864651 122865403 + 0.666667 NA intron (NM_152644, intron 1 of 3) L1MC2|LINE|L1 14554 NM_152644 196792 Hs.114648 NM_152644 ENSG00000213185 FAM24B - family with sequence similarity 24 member B protein-coding 217.667-19 chr15 89310820 89311298 + 0.666667 NA intron (NM_001113378, intron 34 of 37) AluSg|SINE|Alu 15751 NR_106824 102466983 NR_106824 ENSG00000275101 MIR6766 hsa-mir-6766 microRNA 6766 ncRNA 199.667-12 chr14 32698000 32698522 + 0.666667 NA intron (NM_004274, intron 9 of 13) intron (NM_004274, intron 9 of 13) -240618 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 257-23 chr3 191331810 191332406 + 0.666667 NA intron (NM_178335, intron 1 of 11) intron (NM_178335, intron 1 of 11) -1572 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 176.167-11 chr12 117409971 117410433 + 0.666667 NA Intergenic MIR|SINE|MIR -48400 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 213.667-49 chrX 94690114 94690572 + 0.666667 NA Intergenic THE1B-int|LTR|ERVL-MaLR 372883 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 205.5-39 chr8 27872027 27872399 + 0.666667 NA intron (NM_173833, intron 8 of 8) intron (NM_173833, intron 8 of 8) 13903 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 192.167-5 chr1 226121624 226122087 + 0.666667 NA Intergenic CpG -26148 NR_146443 107985353 Hs.735455 NR_146443 ENSG00000234478 ACBD3-AS1 - ACBD3 antisense RNA 1 ncRNA 201.667-2 chr1 78716417 78716823 + 0.666667 NA Intergenic Intergenic 66789 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 238.5-7 chr11 12493501 12493984 + 0.666667 NA intron (NM_018222, intron 4 of 12) intron (NM_018222, intron 4 of 12) 116171 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 195-50 chr9 137080175 137080677 + 0.666667 NA intron (NM_207309, intron 6 of 8) intron (NM_207309, intron 6 of 8) 2909 NM_207309 91373 Hs.142076 NM_207309 ENSG00000197355 UAP1L1 - UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 protein-coding 180.667-26 chr2 23480630 23481136 + 0.666667 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 95704 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 176.333-34 chr8 105446250 105446689 + 0.666667 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 126926 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 172.167-7 chr14 59317636 59317964 + 0.666667 NA intron (NM_001270520, intron 4 of 24) MIRb|SINE|MIR 54359 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 172.333-8 chr10 61888651 61888911 + 0.666667 NA Intergenic Intergenic -12918 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 188.667-26 chr2 200047729 200048085 + 0.666667 NA Intergenic L1MA7|LINE|L1 -92416 NM_001039693 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 218.667-17 chr2 76451770 76452356 + 0.666667 NA Intergenic L1ME1|LINE|L1 -533902 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 165-40 chr4 91322867 91323257 + 0.666667 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 954240 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 267.5-14 chr14 88641905 88642401 + 0.666667 NA intron (NM_183387, intron 30 of 42) intron (NM_183387, intron 30 of 42) 47733 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 176.667-25 chr2 70484631 70485147 + 0.666667 NA intron (NM_003236, intron 2 of 5) MLT1N2|LTR|ERVL-MaLR -3249 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 241-12 chr2 107932291 107932918 + 0.666667 NA Intergenic Intergenic -53920 NM_001305007 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 211.834-8 chr20 31734326 31734897 + 0.666667 NA Intergenic AluSq2|SINE|Alu -4679 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 189-12 chr11 12378111 12378570 + 0.666667 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 769 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 164-34 chr2 69221724 69222131 + 0.666667 NA intron (NM_032208, intron 17 of 17) intron (NM_032208, intron 17 of 17) 118245 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 207.5-23 chr20 42483479 42483858 + 0.666667 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -201815 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 177-25 chr3 186449762 186450227 + 0.666667 NA Intergenic MER92-int|LTR|ERV1 9649 NR_151710 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 267.333-20 chr5 16465839 16466298 + 0.666667 NA promoter-TSS (NM_033414) promoter-TSS (NM_033414) -268 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 212.833-7 chr12 50315124 50315734 + 0.666667 NA Intergenic AluSx|SINE|Alu -31909 NM_001113546 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 187.667-18 chr14 65036713 65037043 + 0.666667 NA intron (NM_002028, intron 7 of 11) AluSx1|SINE|Alu -7810 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 193.667-15 chr12 44537977 44538451 + 0.666667 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 337447 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 198-12 chr15 56633416 56633939 + 0.666667 NA intron (NM_001002843, intron 20 of 20) AluSg|SINE|Alu 100409 NM_001002843 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 183.667-13 chr12 120228109 120228506 + 0.666667 NA intron (NM_002859, intron 1 of 10) intron (NM_002859, intron 1 of 10) 21856 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 167.667-18 chr2 24382561 24382856 + 0.666667 NA Intergenic Intergenic -22172 NM_001348186 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 207.5-26 chr3 158468666 158469000 + 0.666667 NA intron (NM_001271838, intron 7 of 9) intron (NM_001271838, intron 7 of 9) -57875 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 296.667-4 chr11 40225348 40225822 + 0.666667 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 67545 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 169.333-57 chr7 51098856 51099340 + 0.666667 NA intron (NM_015198, intron 6 of 12) L1MB2|LINE|L1 217711 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 258.167-9 chr13 109249001 109249640 + 0.666667 NA Intergenic L1ME1|LINE|L1 -82017 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 172-26 chr2 229185123 229185669 + 0.666667 NA intron (NM_001100818, intron 1 of 2) L2|LINE|L2 46696 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 207.667-45 chr9 35778916 35779253 + 0.666667 NA Intergenic LTR78B|LTR|ERV1 -13325 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 176.833-21 chr20 33167354 33167823 + 0.666667 NA promoter-TSS (NM_080574) promoter-TSS (NM_080574) -571 NM_080574 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 269.833-13 chr9 91948619 91949189 + 0.666667 NA intron (NM_001318204, intron 1 of 7) CpG 1324 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 222.667-16 chr14 82926344 82926956 + 0.666667 NA Intergenic Intergenic 284018 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 213.333-45 chr8 53749179 53749652 + 0.666667 NA intron (NM_213620, intron 12 of 13) MLT1N2|LTR|ERVL-MaLR 93627 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 177.833-9 chr13 107567007 107567398 + 0.666667 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -35954 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 172.667-47 chr5 113330782 113331207 + 0.666667 NA intron (NM_001085377, intron 3 of 18) MamRep38|DNA|hAT -36056 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 223-41 chr7 24979279 24979641 + 0.666667 NA intron (NM_015550, intron 1 of 22) CpG 718 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 167.833-14 chr14 42224921 42225195 + 0.666667 NA Intergenic Intergenic 618202 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 205.667-34 chr5 114223893 114224463 + 0.666667 NA Intergenic LTR50|LTR|ERVL -137892 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 197-2 chr1 83119565 83120005 + 0.666667 NA intron (NR_147074, intron 9 of 10) L2|LINE|L2 -133577 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 183.333-39 chr2 148644964 148645285 + 0.666667 NA exon (NM_015630, exon 1 of 14) exon (NM_015630, exon 1 of 14) 373 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 193.667-50 chr7 30763156 30763621 + 0.666667 NA intron (NR_037598, intron 2 of 19) intron (NR_037598, intron 2 of 19) -8029 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 167.5-44 chr8 141852661 141853161 + 0.666667 NA Intergenic Intergenic -66598 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 245.667-16 chr3 101626103 101626544 + 0.666667 NA Intergenic Intergenic -50107 NR_024407 100009676 Hs.743292 NR_024407 ENSG00000256628 ZBTB11-AS1 - ZBTB11 antisense RNA 1 ncRNA 216-20 chr16 76119994 76120446 + 0.666667 NA Intergenic Intergenic -157181 NM_001322187 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 224.333-22 chr2 180979789 180980180 + 0.666667 NA promoter-TSS (NM_182678) promoter-TSS (NM_182678) -401 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 217 chr10 101414543 101414964 + 0.666667 NA intron (NM_003939, intron 1 of 13) Tigger3b|DNA|TcMar-Tigger 60588 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 163.5-30 chr3 124871766 124872225 + 0.666667 NA intron (NM_001354766, intron 2 of 13) intron (NM_001354766, intron 2 of 13) 15370 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 168.5-38 chr5 148224237 148224608 + 0.666667 NA Intergenic Intergenic -14103 NM_001363511 105378220 Hs.534838 NM_001363511 ENSG00000248109 MARCOL - MARCO like protein-coding 255.167-16 chr18 62196255 62196652 + 0.666667 NA intron (NR_144409, intron 1 of 31) AluSz6|SINE|Alu 9198 NR_144403 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 172.5-34 chr3 8526382 8526828 + 0.666667 NA intron (NM_001278233, intron 1 of 4) MER5A|DNA|hAT-Charlie 24782 NM_014583 29995 Hs.475353 NM_014583 ENSG00000071282 LMCD1 - LIM and cysteine rich domains 1 protein-coding 174-40 chr5 98763612 98764285 + 0.666667 NA Intergenic Intergenic -4684 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 174-43 chr7 27199046 27199566 + 0.666667 NA exon (NM_000522, exon 1 of 2) exon (NM_000522, exon 1 of 2) 785 NM_000522 3209 Hs.592172 NM_000522 ENSG00000106031 HOXA13 HOX1|HOX1J homeobox A13 protein-coding 214.667-23 chr21 31793667 31794152 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -61791 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 172-34 chr3 116981280 116981567 + 0.666667 NA Intergenic Intergenic 59992 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 207.667-39 chr6 13728024 13728519 + 0.666667 NA Intergenic L1MC4|LINE|L1 -16436 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 192.333-43 chr5 108467610 108468038 + 0.666667 NA Intergenic Tigger4|DNA|TcMar-Tigger -85726 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 221-16 chr19 48185649 48186140 + 0.666667 NA intron (NM_199341, intron 3 of 3) AluSz6|SINE|Alu 15214 NM_199341 374920 Hs.664054 NM_199341 ENSG00000185453 ZSWIM9 C19orf68 zinc finger SWIM-type containing 9 protein-coding 163.5-51 chr8 86420393 86420860 + 0.666667 NA intron (NM_007013, intron 9 of 24) HAL1|LINE|L1 78079 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 177.333-17 chr2 175857602 175857938 + 0.666667 NA Intergenic LTR12F|LTR|ERV1 144497 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 255.333-20 chr5 80602638 80603266 + 0.666667 NA Intergenic Intergenic 19572 NR_125754 103689917 Hs.740035 NR_125754 ENSG00000251221 LINC01337 TCONS_00009713 long intergenic non-protein coding RNA 1337 ncRNA 187.333-24 chr2 24431229 24431695 + 0.666667 NA Intergenic AluJb|SINE|Alu -59792 NM_003743 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 233-33 chr8 21915031 21915458 + 0.666667 NA Intergenic Intergenic -1554 NM_201349 9046 Hs.71215 NM_003974 ENSG00000147443 DOK2 p56DOK|p56dok-2 docking protein 2 protein-coding 169-2 chr1 97863364 97863837 + 0.666667 NA intron (NM_000110, intron 2 of 22) L1ME3G|LINE|L1 57459 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 274.167-8 chr18 6352775 6353745 + 0.666667 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 5770 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 254.333-15 chr16 64429256 64429862 + 0.666667 NA Intergenic Intergenic 692504 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 171.333-2 chr1 41955436 41955843 + 0.666667 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -36717 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 168.833-10 chr18 22779484 22779803 + 0.666667 NA intron (NR_110782, intron 1 of 1) intron (NR_110782, intron 1 of 1) 7194 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 221-17 chr2 17795430 17795874 + 0.666667 NA Intergenic MER5A|DNA|hAT-Charlie -20808 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 174.833-19 chr5 74542248 74542670 + 0.666667 NA Intergenic Intergenic -5483 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 208.333-18 chr15 60371595 60372194 + 0.666667 NA intron (NM_001002857, intron 4 of 13) AluSp|SINE|Alu 26092 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 183.5-10 chr13 28170091 28170606 + 0.666667 NA intron (NM_175854, intron 1 of 18) intron (NM_175854, intron 1 of 18) -31174 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 230.333-27 chr5 39731710 39732142 + 0.666667 NA Intergenic Intergenic 211495 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 195.167-37 chr8 70838478 70838868 + 0.666667 NA Intergenic MIRb|SINE|MIR 169334 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 180.333-51 chr7 41718330 41718654 + 0.666667 NA intron (NR_027118, intron 2 of 3) MIRb|SINE|MIR -15402 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 244.667-17 chr2 221838732 221839221 + 0.666667 NA Intergenic Intergenic -264774 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 278.167-24 chr5 147044222 147044718 + 0.666667 NA intron (NM_181677, intron 2 of 10) intron (NM_181677, intron 2 of 10) 11667 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 171-39 chr20 52846101 52846439 + 0.666667 NA Intergenic Intergenic -126088 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 189.667-39 chr4 78552240 78552582 + 0.666667 NA intron (NM_005139, intron 1 of 12) intron (NM_005139, intron 1 of 12) 641 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 228.333-6 chr10 72065270 72065704 + 0.666667 NA intron (NM_014767, intron 9 of 11) Tigger3a|DNA|TcMar-Tigger 23064 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 198.833-32 chr8 126765962 126766291 + 0.666667 NA Intergenic Intergenic -207648 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 178.833-23 chr20 25374368 25374810 + 0.666667 NA intron (NM_001042472, intron 1 of 12) AluSp|SINE|Alu 16246 NM_015600 26090 Hs.441550 NM_015600 ENSG00000100997 ABHD12 ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12 abhydrolase domain containing 12 protein-coding 196.167-3 chr10 21153457 21153857 + 0.666667 NA intron (NM_001173484, intron 2 of 6) AluSg|SINE|Alu -20333 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 195.333-31 chr9 108115112 108115621 + 0.666667 NA Intergenic Intergenic -625597 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 242.833-14 chr3 104994239 104994624 + 0.666667 NA Intergenic Intergenic -372282 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 243.167-19 chr8 124236716 124237194 + 0.666667 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 10443 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 176.667-39 chr3 133741153 133741616 + 0.666667 NA intron (NM_001354703, intron 7 of 22) L1M5|LINE|L1 -5009 NM_001063 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 169-19 chr15 74001782 74002212 + 0.666667 NA intron (NM_033247, intron 2 of 4) AluJr|SINE|Alu 7281 NM_033244 5371 Hs.526464 NM_002675 ENSG00000140464 PML MYL|PP8675|RNF71|TRIM19 promyelocytic leukemia protein-coding 183.333-42 chr22 28787138 28787645 + 0.666667 NA 3' UTR (NM_001284265, exon 5 of 5) 3' UTR (NM_001284265, exon 5 of 5) 13181 NM_001079539 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 175.333-50 chr7 9307345 9307810 + 0.666667 NA Intergenic Intergenic -326693 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 179.667-11 chr15 45084908 45085369 + 0.666667 NA Intergenic Intergenic 29023 NM_014080 50506 Hs.71377 NM_014080 ENSG00000140279 DUOX2 LNOX2|NOXEF2|P138-TOX|TDH6|THOX2 dual oxidase 2 protein-coding 164.833-18 chr7 112274054 112274625 + 0.666667 NA intron (NM_021994, intron 1 of 11) AluJb|SINE|Alu 67644 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 202.667-6 chr12 116007149 116007491 + 0.666667 NA intron (NM_015335, intron 11 of 30) intron (NM_015335, intron 11 of 30) 141334 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 229.5-8 chr14 61277676 61278114 + 0.666667 NA 3' UTR (NM_001017970, exon 1 of 1) 3' UTR (NM_001017970, exon 1 of 1) 3443 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 196-7 chr12 102523161 102523591 + 0.666667 NA Intergenic MIR3|SINE|MIR -42813 NM_001111283 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 165-37 chr3 196568632 196568965 + 0.666667 NA promoter-TSS (NM_001345917) promoter-TSS (NM_001345917) -124 NM_001345911 348793 Hs.385865 NM_182627 ENSG00000185798 WDR53 - WD repeat domain 53 protein-coding 189.667-15 chr14 31546124 31546634 + 0.666667 NA Intergenic L1MA1|LINE|L1 -15025 NR_120408 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 170.333-5 chr10 30099305 30099676 + 0.666667 NA intron (NM_001350022, intron 1 of 4) L2a|LINE|L2 16004 NM_001350021 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 184.667-32 chr2 172312633 172313017 + 0.666667 NA Intergenic AluSx1|SINE|Alu -114511 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 217.667-7 chr10 44311746 44312264 + 0.666667 NA Intergenic Intergenic 19255 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 202.334-9 chr3 27628170 27628756 + 0.666667 NA Intergenic L1ME2|LINE|L1 93860 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 203.333-63 chr8 130429042 130429402 + 0.666667 NA intron (NM_001362925, intron 1 of 29) MLT1C|LTR|ERVL-MaLR 14438 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 200-19 chr19 957736 958110 + 0.666667 NA intron (NM_005224, intron 3 of 8) AluSx1|SINE|Alu -26405 NM_024100 57418 Hs.325321 NM_024100 ENSG00000065268 WDR18 Ipi3|R32184_1 WD repeat domain 18 protein-coding 191-33 chr22 39617398 39617750 + 0.666667 NA intron (NM_001003406, intron 3 of 35) intron (NM_001003406, intron 3 of 35) 46821 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 176.833-10 chr12 8971241 8971590 + 0.666667 NA intron (NR_137427, intron 1 of 2) L1M5|LINE|L1 -18131 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 189-7 chr10 26859556 26859960 + 0.666667 NA intron (NM_001178116, intron 1 of 11) intron (NM_001178116, intron 1 of 11) 1329 NM_001012752 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 377.167-6 chr5 24155870 24156532 + 0.666667 NA intron (NR_131245, intron 4 of 4) L1MA2|LINE|L1 204853 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 204.333-43 chr6 138593969 138594365 + 0.666667 NA Intergenic Intergenic -21598 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 183.833-4 chr10 81752460 81752998 + 0.666667 NA Intergenic Intergenic -122465 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 190.667-6 chr10 55098124 55098728 + 0.666667 NA intron (NM_001354404, intron 3 of 34) LTR9|LTR|ERV1 -297135 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 173.5-45 chr4 167589494 167589832 + 0.666667 NA Intergenic L1MDa|LINE|L1 -355073 NM_001204352 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 192-35 chr6 65404646 65405080 + 0.666667 NA intron (NM_198283, intron 5 of 9) intron (NM_198283, intron 5 of 9) 103445 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 180.5-45 chr8 66427849 66428279 + 0.666667 NA promoter-TSS (NM_015169) promoter-TSS (NM_015169) 913 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 177.333-31 chr6 55521088 55521647 + 0.666667 NA intron (NM_001287746, intron 4 of 9) Tigger1|DNA|TcMar-Tigger 57847 NM_001287746 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 196-27 chr20 34216083 34216614 + 0.666667 NA Intergenic CpG -44017 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 263.333-27 chr8 87197800 87198286 + 0.666667 NA intron (NM_173538, intron 4 of 10) L1M4|LINE|L1 331628 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 189.667-38 chr4 41845424 41845937 + 0.666667 NA Intergenic AluJb|SINE|Alu 36931 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 163.667-55 chr7 82306491 82306766 + 0.666667 NA intron (NM_000722, intron 3 of 38) LTR49-int|LTR|ERV1 137149 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 185.333-22 chr19 32975732 32976288 + 0.666667 NA intron (NM_152266, intron 4 of 4) intron (NM_152266, intron 4 of 4) 3768 NM_001300978 91442 Hs.579899 NM_152266 ENSG00000131944 FAAP24 C19orf40 FA core complex associated protein 24 protein-coding 184.667-48 chr8 25576914 25577317 + 0.666667 NA Intergenic Intergenic 117882 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 209-41 chr8 81879347 81879796 + 0.666667 NA Intergenic Intergenic -37285 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 232.667-22 chr20 41999459 42000085 + 0.666667 NA Intergenic L1M2|LINE|L1 -381395 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 218-34 chr5 57841556 57841920 + 0.666667 NA Intergenic Intergenic 57424 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 268.5-23 chr5 32172357 32172934 + 0.666667 NA intron (NM_022130, intron 1 of 3) AluSc|SINE|Alu 1674 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 173.167-40 chr8 78234818 78235240 + 0.666667 NA Intergenic Intergenic -281311 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 219.333-41 chr7 106242220 106242685 + 0.666667 NA Intergenic Intergenic 42531 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 271.5-8 chr12 1724570 1725317 + 0.666667 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 33873 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 176.333-27 chr5 39137834 39138158 + 0.666667 NA intron (NM_001243093, intron 6 of 18) intron (NM_001243093, intron 6 of 18) -63597 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 216.334-3 chr15 85498044 85498687 + 0.666667 NA intron (NM_007200, intron 2 of 36) intron (NM_007200, intron 2 of 36) 117762 NM_006738 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 218.667-26 chr3 196794953 196795393 + 0.666667 NA intron (NM_002577, intron 2 of 14) L1MEf|LINE|L1 55316 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 234.333-30 chr5 172694 173203 + 0.666667 NA exon (NM_052909, exon 17 of 20) exon (NM_052909, exon 17 of 20) -18547 NM_001080478 389257 Hs.103142 NM_001080478 ENSG00000185028 LRRC14B - leucine rich repeat containing 14B protein-coding 207.167-8 chr15 59548992 59549583 + 0.666667 NA Intergenic LTR36|LTR|ERV1 -62496 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 180.333-23 chr18 7160449 7160828 + 0.666667 NA Intergenic AluSz|SINE|Alu -42841 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 200.333-24 chr2 160721687 160722329 + 0.666667 NA Intergenic Intergenic -228201 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 223.667-8 chr10 89276764 89277244 + 0.666667 NA Intergenic L2b|LINE|L2 -24965 NM_001288979 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 279-5 chr1 185792349 185792939 + 0.666667 NA intron (NM_031935, intron 1 of 106) intron (NM_031935, intron 1 of 106) 58253 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 223.167-3 chr10 25413837 25414260 + 0.666667 NA intron (NM_020752, intron 4 of 10) intron (NM_020752, intron 4 of 10) -237664 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 178.667-4 chr10 57571116 57571592 + 0.666667 NA Intergenic Intergenic -266795 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 203.333-12 chr11 58001104 58001461 + 0.666667 NA Intergenic Intergenic -22599 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 184-30 chr2 122057185 122057585 + 0.666667 NA Intergenic LTR37B|LTR|ERV1 301734 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 206.667-26 chr2 67093405 67093951 + 0.666667 NA intron (NR_110564, intron 1 of 4) AluJr|SINE|Alu 7232 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 231-3 chr1 201229953 201230468 + 0.666667 NA Intergenic Intergenic 39385 NM_001164586 91156 Hs.519024 NM_178275 ENSG00000163395 IGFN1 EEF1A2BP1 immunoglobulin like and fibronectin type III domain containing 1 protein-coding 219.5-12 chr18 13140157 13140537 + 0.666667 NA Intergenic Intergenic -78413 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 212.833-16 chr4 37027989 37028574 + 0.666667 NA Intergenic (ATAGAA)n|Simple_repeat|Simple_repeat 26502 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 262.667-23 chr20 49147521 49148025 + 0.666667 NA intron (NM_004602, intron 5 of 13) L1ME4a|LINE|L1 40597 NM_017452 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 210.333-9 chr10 88281625 88282123 + 0.666667 NA intron (NM_018363, intron 6 of 6) intron (NM_018363, intron 6 of 6) 301444 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 165.667-55 chr8 123841040 123841369 + 0.666667 NA Intergenic Intergenic -10783 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 168.333-36 chr2 123742562 123743038 + 0.666667 NA Intergenic L1ME1|LINE|L1 282374 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 213.667-41 chr6 37803259 37803583 + 0.666667 NA Intergenic AluJo|SINE|Alu -16306 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 262.5-7 chr12 9723617 9724052 + 0.666667 NA intron (NM_001253750, intron 1 of 3) L1MEf|LINE|L1 9465 NM_001267701 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 179.833-3 chr1 90377513 90377921 + 0.666667 NA Intergenic MLT1H|LTR|ERVL-MaLR -280033 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 168.333-21 chr14 65028419 65028776 + 0.666667 NA intron (NM_002028, intron 6 of 11) intron (NM_002028, intron 6 of 11) -16091 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 206.333-35 chr8 126209445 126209785 + 0.666667 NA Intergenic L1PA15|LINE|L1 -115880 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 192.833-30 chr5 149519897 149520361 + 0.666667 NA intron (NM_001271742, intron 3 of 9) intron (NM_001271742, intron 3 of 9) 30236 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 229.833-19 chr5 165542599 165543269 + 0.666667 NA Intergenic Intergenic 1072655 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 193-27 chr4 31368114 31368616 + 0.666667 NA Intergenic Intergenic -138179 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 258.167-15 chr2 232553783 232554257 + 0.666667 NA intron (NM_001330202, intron 1 of 6) intron (NM_001330202, intron 1 of 6) 3214 NM_001330202 9470 Hs.292026 NM_004846 ENSG00000135930 EIF4E2 4E-LP|4EHP|EIF4EL3|IF4e|h4EHP eukaryotic translation initiation factor 4E family member 2 protein-coding 227.834-3 chr6 122799145 122799677 + 0.666667 NA intron (NM_001286138, intron 2 of 6) MIR3|SINE|MIR 10153 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 215.333-31 chr3 132488918 132489419 + 0.666667 NA intron (NM_001329126, intron 32 of 56) L2c|LINE|L2 71666 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 241.5-20 chr6 91932920 91933414 + 0.666667 NA Intergenic L2a|LINE|L2 -242739 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 187.5-4 chr1 73103710 73104121 + 0.666667 NA Intergenic L1PA17|LINE|L1 -202255 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 186.333-12 chr14 43365752 43366194 + 0.666667 NA Intergenic L1MD1|LINE|L1 1141310 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 212.167-5 chr12 26641470 26642107 + 0.666667 NA intron (NM_002223, intron 21 of 56) intron (NM_002223, intron 21 of 56) 191406 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 195.167-6 chr10 70071828 70072128 + 0.666667 NA intron (NM_018649, intron 1 of 8) Tigger3b|DNA|TcMar-Tigger 19132 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 173.333-8 chr12 130725438 130725826 + 0.666667 NA Intergenic L1PA14|LINE|L1 -9327 NM_001351233 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 176.667-53 chr7 28745016 28745416 + 0.666667 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 59083 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 182.167-9 chr16 81026554 81026929 + 0.666667 NA intron (NM_001100624, intron 9 of 10) intron (NM_001100624, intron 9 of 10) -9101 NM_015251 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 238.167-17 chr19 48259591 48260352 + 0.666667 NA Intergenic LTR13|LTR|ERVK -4025 NR_147707 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 168.833-4 chr1 187660392 187660748 + 0.666667 NA Intergenic L3|LINE|CR1 216942 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 226.667-31 chr4 121195891 121196639 + 0.666667 NA intron (NM_001128843, intron 2 of 12) intron (NM_001128843, intron 2 of 12) 20362 NM_001128843 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 227.333-6 chr10 108818723 108819248 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL -749692 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 198.833-25 chr5 7256655 7257149 + 0.666667 NA Intergenic Intergenic 12452 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 174.667-26 chr2 125760793 125761390 + 0.666667 NA Intergenic Intergenic 356894 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 235.833-3 chr11 11896632 11897206 + 0.666667 NA intron (NM_001282659, intron 4 of 27) intron (NM_001282659, intron 4 of 27) 55496 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 242.333-10 chr15 99634738 99635145 + 0.666667 NA intron (NM_001365209, intron 3 of 10) intron (NM_001365209, intron 3 of 10) 1963 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 169.333-7 chr1 221425956 221426380 + 0.666667 NA Intergenic THE1B-int|LTR|ERVL-MaLR -89872 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 233.333-19 chr20 12234933 12235518 + 0.666667 NA Intergenic LTR82B|LTR|ERVL 317332 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 210-9 chr12 21511507 21511961 + 0.666667 NA intron (NM_016072, intron 3 of 4) intron (NM_016072, intron 3 of 4) 9945 NM_016072 51026 Hs.62275 NM_016072 ENSG00000111711 GOLT1B CGI-141|GCT2|GOT1|GOT1B|YMR292W golgi transport 1B protein-coding 170.333-27 chr19 6165750 6166228 + 0.666667 NA exon (NM_001289179, exon 7 of 15) exon (NM_001289179, exon 7 of 15) 30322 NM_001289177 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 166.834-2 chr12 65118732 65119231 + 0.666667 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 2324 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 193.167-26 chr5 116472000 116472483 + 0.666667 NA TTS (NR_109879) TTS (NR_109879) 24743 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 184.5-2 chr1 50541693 50542064 + 0.666667 NA intron (NM_007051, intron 13 of 18) intron (NM_007051, intron 13 of 18) -118435 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 163.333-35 chr20 14183540 14183870 + 0.666667 NA intron (NM_001351663, intron 3 of 17) L1PA12|LINE|L1 153907 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 187.5 chr1 32536724 32537120 + 0.666667 NA Intergenic L2a|LINE|L2 -2505 NR_111980 653121 Hs.546479 NM_144621 ENSG00000160062 ZBTB8A BOZF1|ZBTB8|ZNF916A zinc finger and BTB domain containing 8A protein-coding 172.667-25 chr18 74662297 74662771 + 0.666667 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 31571 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 240.167-9 chr19 46934634 46935013 + 0.666667 NA intron (NM_004491, intron 2 of 6) AluJb|SINE|Alu 73826 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 174.5-24 chr3 86856485 86856800 + 0.666667 NA Intergenic L2c|LINE|L2 134507 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 184.667-31 chr2 153735676 153736278 + 0.666667 NA Intergenic L1MC4|LINE|L1 -135945 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 201.667-54 chr9 90642185 90642578 + 0.666667 NA intron (NM_017594, intron 1 of 1) intron (NM_017594, intron 1 of 1) 443 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 198.833-3 chr10 43491846 43492303 + 0.666667 NA Intergenic AluJb|SINE|Alu 54963 NM_001355444 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 168.667-22 chr2 198803882 198804194 + 0.666667 NA Intergenic Intergenic -428941 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 180.333 chr1 35870953 35871301 + 0.666667 NA intron (NM_001317123, intron 1 of 18) L1ME3E|LINE|L1 1319 NM_001317123 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute RISC component 1 protein-coding 164.167-58 chrX 70494364 70494829 + 0.666667 NA intron (NM_020730, intron 7 of 13) intron (NM_020730, intron 7 of 13) -38602 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 190-3 chr1 88476909 88477339 + 0.666667 NA Intergenic Charlie4a|DNA|hAT-Charlie -207020 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 169.333-43 chr3 149902724 149902992 + 0.666667 NA intron (NM_183383, intron 5 of 8) MIR|SINE|MIR 68037 NM_053024 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 163.333-11 chr11 65029580 65029877 + 0.666667 NA intron (NM_013306, intron 1 of 7) AluSz|SINE|Alu 2289 NM_013306 29907 Hs.80132 NM_013306 ENSG00000110025 SNX15 HSAF001435 sorting nexin 15 protein-coding 176-22 chr2 121733784 121734279 + 0.666667 NA intron (NM_032390, intron 2 of 6) AluSx1|SINE|Alu 2844 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 226.667-38 chr8 76370129 76370742 + 0.666667 NA Intergenic Intergenic -36219 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 196-9 chr13 73905946 73906399 + 0.666667 NA intron (NM_007249, intron 3 of 7) intron (NM_007249, intron 3 of 7) 227757 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 284.5-5 chr12 21839933 21840360 + 0.666667 NA intron (NM_005691, intron 27 of 37) intron (NM_005691, intron 27 of 37) -65440 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 164-23 chr17 57557973 57558360 + 0.666667 NA intron (NM_001322250, intron 7 of 13) intron (NM_001322250, intron 7 of 13) -34569 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 182.833-16 chr15 88503399 88503832 + 0.666667 NA intron (NR_135742, intron 6 of 6) intron (NR_135742, intron 6 of 6) 35907 NM_001321972 64963 Hs.111286 NM_022839 ENSG00000181991 MRPS11 HCC-2|MRP-S11|S11mt mitochondrial ribosomal protein S11 protein-coding 165.833-13 chr14 34189231 34189502 + 0.666667 NA Intergenic LTR104_Mam|LTR|Gypsy -238292 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 365.334-4 chr17 61390052 61390880 + 0.666667 NA intron (NM_001320470, intron 25 of 25) intron (NM_001320470, intron 25 of 25) 9140 NR_125749 103689912 Hs.410998 NR_125749 ENSG00000267280 TBX2-AS1 - TBX2 antisense RNA 1 ncRNA 178-46 chr8 127404674 127405141 + 0.666667 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 4508 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 226.833-12 chr20 53493386 53493912 + 0.666667 NA 3' UTR (NM_001193421, exon 3 of 3) 3' UTR (NM_001193421, exon 3 of 3) -59121 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 189.667-57 chr9 68506210 68506642 + 0.666667 NA intron (NM_021965, intron 10 of 10) MER57B2|LTR|ERV1 34441 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 216-3 chr1 53542031 53542374 + 0.666667 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 82803 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 243.833-14 chr19 3275112 3275502 + 0.666667 NA intron (NR_033342, intron 3 of 12) intron (NR_033342, intron 3 of 12) 50029 NR_033342 60680 Hs.655747 NM_021938 ENSG00000161082 CELF5 BRUNOL-5|BRUNOL5|CELF-5 CUGBP Elav-like family member 5 protein-coding 190.833-19 chr3 147946159 147946453 + 0.666667 NA Intergenic Intergenic -131853 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 209.667-5 chr11 10809696 10810038 + 0.666667 NA promoter-TSS (NM_001418) promoter-TSS (NM_001418) 570 NR_120540 101928053 Hs.637773 NR_120540 ENSG00000246308 LOC101928053 - uncharacterized LOC101928053 ncRNA 221 chr1 239988265 239988715 + 0.666667 NA Intergenic ERVL-E-int|LTR|ERVL -19034 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 173.167-44 chr9 89660410 89660748 + 0.666667 NA intron (NR_024280, intron 1 of 5) intron (NR_024280, intron 1 of 5) 20796 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 189.167-16 chr14 53215405 53215927 + 0.666667 NA Intergenic Intergenic 62312 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 209.333-15 chr12 63362632 63363188 + 0.666667 NA Intergenic L1PA16|LINE|L1 -210100 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 225.833-15 chr2 121323637 121323996 + 0.666667 NA Intergenic MLT1A0|LTR|ERVL-MaLR -38614 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 210.5-7 chr12 9116147 9116554 + 0.666667 NA promoter-TSS (NM_001347424) promoter-TSS (NM_001347424) -121 NM_000014 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 223-35 chr4 16071726 16072118 + 0.666667 NA intron (NM_001371408, intron 2 of 24) intron (NM_001371408, intron 2 of 24) 4196 NM_001145849 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 192.333-5 chr1 216378241 216378554 + 0.666667 NA intron (NM_206933, intron 3 of 71) intron (NM_206933, intron 3 of 71) 44999 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 224.333-16 chr18 4053000 4053426 + 0.666667 NA intron (NM_001242761, intron 2 of 11) THE1C|LTR|ERVL-MaLR 90860 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 169.5-3 chr1 102700890 102701162 + 0.666667 NA Intergenic Intergenic 407470 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 232.5-19 chr3 112715372 112715958 + 0.666667 NA Intergenic MLT2B2|LTR|ERVL -21424 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 220-17 chr2 125447802 125448509 + 0.666667 NA Intergenic AluSc8|SINE|Alu 669830 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 202.333-9 chr11 36049414 36049831 + 0.666667 NA intron (NM_174902, intron 2 of 5) intron (NM_174902, intron 2 of 5) 28279 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 230.333-9 chr12 73166332 73166803 + 0.666667 NA intron (NR_110130, intron 2 of 3) MER4-int|LTR|ERV1 7377 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 187.5-21 chr19 14406184 14406665 + 0.666667 NA exon (NM_078481, exon 15 of 20) exon (NM_078481, exon 15 of 20) 12917 NM_005804 10212 Hs.311609 NM_005804 ENSG00000123136 DDX39A BAT1|BAT1L|DDX39|DDXL|URH49 DExD-box helicase 39A protein-coding 190-18 chr12 64015284 64015771 + 0.666667 NA intron (NM_001346201, intron 3 of 21) intron (NM_001346201, intron 3 of 21) 170827 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 180.333-12 chr11 115128293 115128699 + 0.666667 NA Intergenic Intergenic -205081 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 202.167-29 chr4 77883730 77884419 + 0.666667 NA intron (NM_020236, intron 3 of 8) intron (NM_020236, intron 3 of 8) 21244 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 231.333-14 chr12 25156972 25157400 + 0.666667 NA intron (NM_001352067, intron 1 of 10) AluYc|SINE|Alu 37974 NM_001352066 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 170.667-19 chr19 7807545 7807917 + 0.666667 NA Intergenic MIRb|SINE|MIR 20247 NR_002931 440508 Hs.568222 NR_002931 CLEC4GP1 - C-type lectin domain family 4 member G pseudogene 1 pseudo 183.167-15 chr17 71908620 71909141 + 0.666667 NA Intergenic Intergenic 117099 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 185.5-15 chr14 27162906 27163382 + 0.666667 NA Intergenic L1MB7|LINE|L1 254502 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 244.333-32 chr6 42049220 42049837 + 0.666667 NA promoter-TSS (NM_138572) promoter-TSS (NM_138572) -634 NM_001136017 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 220.5-10 chr12 63452066 63452569 + 0.666667 NA Intergenic L1MB1|LINE|L1 216176 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 240-52 chr6 66467593 66467985 + 0.666667 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat 679910 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 172.5-7 chr10 85394577 85394939 + 0.666667 NA Intergenic LTR52|LTR|ERVL 38014 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 177.167-28 chr7 108016785 108017448 + 0.666667 NA Intergenic Intergenic -13955 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 183.167-28 chr5 29899705 29900174 + 0.666667 NA Intergenic MLT2B3|LTR|ERVL 19379 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 214.333-36 chr5 130660427 130660933 + 0.666667 NA Intergenic Intergenic 504576 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 175.833-36 chr5 43491274 43491580 + 0.666667 NA intron (NM_198566, intron 10 of 12) intron (NM_198566, intron 10 of 12) -7562 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 173-24 chr19 46398728 46399316 + 0.666667 NA Intergenic L1PA4|LINE|L1 14542 NM_032040 83987 Hs.97876 NM_032040 ENSG00000169515 CCDC8 3M3|PPP1R20|p90 coiled-coil domain containing 8 protein-coding 314.166-5 chr8 115406077 115406997 + 0.5 NA Intergenic Intergenic 261476 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 181.833-21 chr4 119714262 119714693 + 0.5 NA Intergenic Intergenic -85673 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 167.333-10 chr11 26310996 26311471 + 0.5 NA intron (NM_001313726, intron 2 of 27) MIR|SINE|MIR -20897 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 182-18 chr19 28841232 28841884 + 0.5 NA Intergenic Intergenic -113864 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 215.167-2 chr1 146013277 146013947 + 0.5 NA Intergenic L1ME1|LINE|L1 8123 NM_145277 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 233.833-16 chr5 23035794 23036467 + 0.5 NA Intergenic Intergenic -182786 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 187.833-30 chr7 108499054 108499722 + 0.5 NA intron (NM_001256010, intron 4 of 9) intron (NM_001256010, intron 4 of 9) 26747 NM_001256007 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 207.167-19 chr5 62562534 62563021 + 0.5 NA intron (NM_016338, intron 27 of 29) intron (NM_016338, intron 27 of 29) -15958 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 168.167-9 chr15 82977240 82977888 + 0.5 NA Intergenic L3|LINE|CR1 -8646 NM_031452 83640 Hs.80624 NM_031452 ENSG00000169612 RAMAC C15orf18|FAM103A1|HsT19360|RAM|RAMMET RNA guanine-7 methyltransferase activating subunit protein-coding 187.333-20 chr15 35697573 35698041 + 0.5 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) 151612 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 197-34 chr7 44463254 44463885 + 0.5 NA intron (NM_015332, intron 2 of 5) intron (NM_015332, intron 2 of 5) 27089 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 172-45 chr6 45008116 45008634 + 0.5 NA intron (NM_001261823, intron 4 of 9) AluJr|SINE|Alu 189395 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 164.167-4 chr1 235865030 235865457 + 0.5 NA intron (NR_102436, intron 1 of 3) L2a|LINE|L2 1684 NM_000081 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 172.833-6 chr10 66062221 66062673 + 0.5 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 491022 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 197.667-28 chr2 56132380 56132886 + 0.5 NA Intergenic MIR3|SINE|MIR -42251 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 202.667-44 chrX 9853546 9854335 + 0.5 NA intron (NM_001649, intron 1 of 9) intron (NM_001649, intron 1 of 9) -58432 NM_001320664 357 Hs.567236 NM_001649 ENSG00000146950 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 167.833-38 chr5 146226197 146226867 + 0.5 NA intron (NM_018989, intron 3 of 20) AluSq2|SINE|Alu 22927 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 210.333-16 chr17 68458104 68458821 + 0.5 NA promoter-TSS (NR_135471) promoter-TSS (NR_135471) -938 NM_001320772 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 168-44 chr6 24637636 24638265 + 0.5 NA intron (NM_001350409, intron 1 of 21) L1MEd|LINE|L1 8071 NM_001168376 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 169.667-43 chr4 67911898 67912374 + 0.5 NA intron (NM_001114387, intron 9 of 9) HAL1|LINE|L1 -28134 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 165.333-41 chr6 36818563 36819000 + 0.5 NA intron (NM_020939, intron 3 of 20) intron (NM_020939, intron 3 of 20) 20663 NM_020939 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 222.167-21 chr2 49935925 49936412 + 0.5 NA intron (NM_001330097, intron 5 of 5) intron (NM_001330097, intron 5 of 5) 38035 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 189.667-30 chr21 16180815 16181421 + 0.5 NA promoter-TSS (NR_136551) promoter-TSS (NR_136551) -280 NR_136552 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 175.5-11 chr12 25959442 25959846 + 0.5 NA promoter-TSS (NR_038228) promoter-TSS (NR_038228) -202 NR_038228 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 182.833-37 chr8 142669232 142669684 + 0.5 NA promoter-TSS (NR_033343) promoter-TSS (NR_033343) 509 NM_001279352 8629 Hs.535903 NM_003724 ENSG00000234616 JRK JH8|jerky Jrk helix-turn-helix protein protein-coding 177-46 chrX 67562705 67563173 + 0.5 NA intron (NM_001348064, intron 1 of 2) intron (NM_001348064, intron 1 of 2) 18316 NM_001348064 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 217.667-20 chr16 53047092 53047738 + 0.5 NA intron (NR_147075, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 5458 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 214.167-19 chr3 46379541 46380179 + 0.5 NA intron (NR_125406, intron 2 of 3) AluSx1|SINE|Alu 9718 NM_000579 1234 Hs.450802 NM_000579 ENSG00000160791 CCR5 CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22 C-C motif chemokine receptor 5 (gene/pseudogene) protein-coding 276-9 chr14 97185593 97186212 + 0.5 NA Intergenic Intergenic 31045 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 256.167-19 chr5 144192998 144193600 + 0.5 NA intron (NM_020768, intron 2 of 3) L2a|LINE|L2 -12092 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 173.5-29 chr18 998687 999177 + 0.5 NA Intergenic L2c|LINE|L2 -70939 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 167.667-42 chr7 5446628 5447056 + 0.5 NA Intergenic Intergenic -17915 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 191.5-13 chr14 50311518 50312298 + 0.5 NA promoter-TSS (NM_015684) promoter-TSS (NM_015684) 321 NM_024884 79944 Hs.256034 NM_024884 ENSG00000087299 L2HGDH C14orf160|L2HGA L-2-hydroxyglutarate dehydrogenase protein-coding 175.167-28 chr3 47164193 47164585 + 0.5 NA promoter-TSS (NR_033373) promoter-TSS (NR_033373) 19 NR_033373 285352 Hs.570631 NR_033373 KIF9-AS1 - KIF9 antisense RNA 1 ncRNA 230.5-36 chrUn_KI270751v1 150016 150590 + 0.5 NA NA (CCATT)n|Simple_repeat|Simple_repeat NA NA 173.833-14 chr12 95140883 95141255 + 0.5 NA intron (NM_018351, intron 6 of 20) AluSx|SINE|Alu -67451 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 163.667-26 chr2 22970862 22971451 + 0.5 NA Intergenic L1M1|LINE|L1 -414023 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 173.833-9 chr10 111343102 111343837 + 0.5 NA Intergenic Intergenic 229178 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 164-29 chr19 57614266 57614662 + 0.5 NA 5' UTR (NM_003435, exon 1 of 3) 5' UTR (NM_003435, exon 1 of 3) 222 NM_003435 7693 Hs.469694 NM_003435 ENSG00000213762 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 209.333-18 chr19 30184044 30184799 + 0.5 NA Intergenic L1PA5|LINE|L1 -187963 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 171.667-15 chr13 74771085 74771736 + 0.5 NA Intergenic Intergenic 218567 NR_034025 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 165.667-47 chr6 47408998 47409532 + 0.5 NA Intergenic L1MD|LINE|L1 -68524 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 201-31 chr4 52236030 52236549 + 0.5 NA Intergenic L2b|LINE|L2 184985 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 255.833-16 chr4 35202341 35203243 + 0.5 NA Intergenic Intergenic -933045 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 180.5-37 chr6 118829317 118829789 + 0.5 NA intron (NM_017696, intron 7 of 11) intron (NM_017696, intron 7 of 11) 46845 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 191.333-31 chr3 180985600 180985982 + 0.5 NA intron (NR_046073, intron 2 of 2) intron (NR_046073, intron 2 of 2) 3727 NM_001190233 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 190.5-57 chrX 146101292 146101936 + 0.5 NA Intergenic Intergenic -73742 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 182.833-14 chr15 60457838 60458304 + 0.5 NA intron (NR_147171, intron 5 of 16) intron (NR_147171, intron 5 of 16) 21071 NR_147171 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 169.167-13 chr2 5044017 5044603 + 0.5 NA Intergenic MLT2E|LTR|ERVL -388088 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 168.333-32 chr2 29470278 29470748 + 0.5 NA intron (NM_004304, intron 4 of 28) L1ME3|LINE|L1 4864 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 171.167-24 chr3 45030690 45031278 + 0.5 NA intron (NM_001308394, intron 2 of 2) intron (NM_001308394, intron 2 of 2) 841 NM_001308394 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 177.5-47 chr8 63966387 63966868 + 0.5 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 197197 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 166-55 chr4 152391699 152392117 + 0.5 NA intron (NM_033632, intron 2 of 11) intron (NM_033632, intron 2 of 11) -9379 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 184.667-29 chr2 102881454 102881928 + 0.5 NA intron (NR_135562, intron 3 of 3) intron (NR_135562, intron 3 of 3) 14031 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 169-3 chr1 102367789 102368222 + 0.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -370771 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 168.333-19 chr14 42685069 42685630 + 0.5 NA Intergenic Intergenic 1078493 NM_001346173 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 194.667-9 chr10 26724599 26725316 + 0.5 NA intron (NM_001321978, intron 8 of 9) intron (NM_001321978, intron 8 of 9) 27256 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 189.833-24 chrX 12604110 12604722 + 0.5 NA intron (NM_001368400, intron 1 of 15) intron (NM_001368400, intron 1 of 15) 105736 NM_001368400 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 207.167-5 chr13 33797344 33797883 + 0.5 NA Intergenic Intergenic -20456 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 178.833-17 chr18 21119572 21120028 + 0.5 NA Intergenic AluSx3|SINE|Alu -7987 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 172.667 chr1 17324061 17324446 + 0.5 NA intron (NM_012387, intron 1 of 15).2 L1MEd|LINE|L1 16056 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 194.5-15 chr12 68835946 68836744 + 0.5 NA intron (NM_001145340, intron 4 of 4) HAL1|LINE|L1 27321 NM_001145340 4193 Hs.484551 NM_002392 ENSG00000135679 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene protein-coding 187.667-16 chr13 86865231 86865673 + 0.5 NA Intergenic AluY|SINE|Alu -46468 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 193.333-18 chr14 62898377 62898948 + 0.5 NA intron (NM_139318, intron 7 of 10) L1MEd|LINE|L1 146796 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 206.333-37 chr9 105448539 105449290 + 0.5 NA intron (NM_001287191, intron 1 of 13) intron (NM_001287191, intron 1 of 13) 880 NM_001145313 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 262.5-14 chr17 77772654 77773345 + 0.5 NA Intergenic Intergenic -44440 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 178-6 chr10 83826900 83827440 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -150081 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 189.5-27 chr4 15230527 15230983 + 0.5 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) -109233 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 179.167-6 chr11 13098245 13098735 + 0.5 NA Intergenic Intergenic 89174 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 183.333-5 chr1 173794836 173795311 + 0.5 NA Intergenic L1M3|LINE|L1 29059 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 203.333-33 chr20 31852815 31853308 + 0.5 NA intron (NM_001320479, intron 6 of 9) (CCCT)n|Simple_repeat|Simple_repeat -7457 NM_004118 2307 Hs.516971 NM_004118 ENSG00000179772 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 176.833-16 chr18 5973995 5974420 + 0.5 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -78253 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 174.333-13 chr17 35143585 35144192 + 0.5 NA Intergenic L2|LINE|L2 -1585 NM_018096 54475 Hs.85570 NM_018096 ENSG00000073536 NLE1 NLE notchless homolog 1 protein-coding 226.667-21 chr2 70789172 70789755 + 0.5 NA intron (NM_001004311, intron 1 of 4) intron (NM_001004311, intron 1 of 4) 1180 NM_001004311 344018 Hs.407636 NM_001004311 ENSG00000183733 FIGLA BHLHC8|FIGALPHA|POF6 folliculogenesis specific bHLH transcription factor protein-coding 169.167 chr1 26862004 26862536 + 0.5 NA promoter-TSS (NM_006142) promoter-TSS (NM_006142) -879 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 178.833-8 chr12 22287510 22288169 + 0.5 NA intron (NM_003034, intron 1 of 4) intron (NM_003034, intron 1 of 4) 46875 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 194-3 chr1 107090113 107090776 + 0.5 NA Intergenic Intergenic 33770 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 267.833 chr1 45521754 45522431 + 0.5 NA promoter-TSS (NM_002574) promoter-TSS (NM_002574) -154 NM_181696 5052 Hs.180909 NM_002574 ENSG00000117450 PRDX1 MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2 peroxiredoxin 1 protein-coding 192-17 chr17 71469845 71470309 + 0.5 NA Intergenic Intergenic -267898 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 166.5-27 chr22 32355335 32355897 + 0.5 NA intron (NM_006604, intron 1 of 2) intron (NM_006604, intron 1 of 2) 731 NM_006604 10738 Hs.558455 NM_006604 ENSG00000128276 RFPL3 RNF120 ret finger protein like 3 protein-coding 204.667-29 chr20 14749457 14750048 + 0.5 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 179766 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 197.167-39 chr8 88483454 88483882 + 0.5 NA Intergenic L1PA12|LINE|L1 -156185 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 193-30 chr4 140831063 140831566 + 0.5 NA Intergenic L1MD3|LINE|L1 -74929 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 169.833-6 chr11 114340853 114341536 + 0.5 NA Intergenic MIRc|SINE|MIR 38845 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 190.833-23 chr5 89524976 89525408 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 491528 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 192.833-5 chr10 52593209 52593846 + 0.5 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -122994 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 171.667-12 chr12 24570178 24570788 + 0.5 NA intron (NR_029451, intron 2 of 3) LTR40c|LTR|ERVL -7992 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 180.333-5 chr1 212303470 212303937 + 0.5 NA intron (NM_001199756, intron 1 of 12) L1MB8|LINE|L1 1845 NM_001199756 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 178.667-3 chr10 34498844 34499279 + 0.5 NA intron (NM_001184789, intron 3 of 22) intron (NM_001184789, intron 3 of 22) 316235 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 164.833-9 chr17 64257897 64258278 + 0.5 NA intron (NM_018469, intron 1 of 11) AluSx3|SINE|Alu 5173 NM_001288732 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 181.833-22 chr4 178289061 178289424 + 0.5 NA Intergenic Intergenic -381306 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 174.333-18 chr2 23815681 23816116 + 0.5 NA intron (NM_017552, intron 17 of 27) L2a|LINE|L2 111225 NM_017552 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 176.5-19 chr20 48344361 48344849 + 0.5 NA Intergenic Intergenic -15306 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 173.833-29 chr5 147371352 147372023 + 0.5 NA intron (NM_001112724, intron 9 of 12) Charlie10|DNA|hAT-Charlie 82005 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 166.667-47 chr6 145743830 145744518 + 0.5 NA intron (NR_038246, intron 1 of 2) MIRb|SINE|MIR -8151 NM_001360064 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 179.667-17 chr2 49700380 49700933 + 0.5 NA Intergenic Intergenic 273547 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 183.667-55 chr8 6799836 6800300 + 0.5 NA Intergenic L1MC1|LINE|L1 35456 NM_207411 389610 Hs.558840 NM_207411 ENSG00000275591 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK related 5 protein-coding 164.5-50 chr7 77749844 77750246 + 0.5 NA exon (NM_198467, exon 3 of 8) exon (NM_198467, exon 3 of 8) 48389 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 171-48 chr4 129355325 129355758 + 0.5 NA Intergenic Intergenic 259389 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 195.667-9 chr11 4054090 4054556 + 0.5 NA intron (NM_001277962, intron 3 of 12) intron (NM_001277962, intron 3 of 12) -40362 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 205.833-22 chr3 49025434 49026013 + 0.5 NA intron (NM_000884, intron 9 of 13) intron (NM_000884, intron 9 of 13) 3602 NM_199069 25915 Hs.31387 NM_199069 ENSG00000178057 NDUFAF3 2P1|C3orf60|E3-3|MC1DN18 NADH:ubiquinone oxidoreductase complex assembly factor 3 protein-coding 165.833-28 chr3 101708171 101708663 + 0.5 NA Intergenic Cheshire|DNA|hAT-Charlie -4017 NR_002941 285359 Hs.720825 NR_002941 PDCL3P4 - PDCL3 pseudogene 4 pseudo 191.5-12 chr12 47681874 47682433 + 0.5 NA intron (NM_024604, intron 9 of 16) intron (NM_024604, intron 9 of 16) 23877 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 182.833-34 chr7 96438949 96439374 + 0.5 NA Intergenic L1PA16|LINE|L1 64362 NR_163949 180.333-45 chr5 160428600 160429199 + 0.5 NA TTS (NM_004219) TTS (NM_004219) 6989 NM_001282383 9232 Hs.350966 NM_004219 ENSG00000164611 PTTG1 EAP1|HPTTG|PTTG|TUTR1 PTTG1 regulator of sister chromatid separation, securin protein-coding 168.333-5 chr1 187802384 187802854 + 0.5 NA Intergenic Intergenic 358991 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 272.833-6 chr15 58551625 58552860 + 0.5 NA intron (NM_000236, intron 6 of 8) MIRb|SINE|MIR -53507 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 167.333-4 chr10 31775226 31775837 + 0.5 NA Intergenic Intergenic 133395 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 176.167-20 chr16 78197115 78197668 + 0.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 97737 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 172.167-18 chr4 7180289 7180633 + 0.5 NA Intergenic AluSz|SINE|Alu -12077 NM_020777 57537 Hs.479099 NM_020777 ENSG00000184985 SORCS2 - sortilin related VPS10 domain containing receptor 2 protein-coding 184.667-21 chr16 75192820 75193238 + 0.5 NA Intergenic Intergenic 14132 NM_001025200 440387 Hs.610926 NM_001025200 ENSG00000168928 CTRB2 - chymotrypsinogen B2 protein-coding 190.5-29 chr21 23831485 23832172 + 0.5 NA Intergenic Intergenic -446993 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 171.5-51 chr9 123126575 123126987 + 0.5 NA intron (NR_033234, intron 18 of 18) intron (NR_033234, intron 18 of 18) -11304 NR_026677 81571 Hs.708072 NM_030814 ENSG00000236901 MIR600HG C9orf45|GL012|NCRNA00287 MIR600 host gene ncRNA 191.667-30 chr21 29507640 29508185 + 0.5 NA Intergenic AluSx3|SINE|Alu 11865 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 163.5-28 chr20 5864158 5864652 + 0.5 NA TTS (NM_001303477) TTS (NM_001303477) -47105 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 190.667-48 chr6 48768751 48769397 + 0.5 NA Intergenic Intergenic 694179 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 219.833-5 chr12 122206570 122207134 + 0.5 NA TTS (NM_001278342) TTS (NM_001278342) 3143 NM_030765 79369 Hs.363315 NM_030765 ENSG00000176383 B3GNT4 B3GN-T4|beta3Gn-T4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 protein-coding 181-10 chr13 76884460 76884867 + 0.5 NA 3' UTR (NM_138444, exon 1 of 1) 3' UTR (NM_138444, exon 1 of 1) 1742 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 221.667-22 chr2 78994441 78995067 + 0.5 NA Intergenic Intergenic -30948 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 165.667-51 chr7 73738320 73738837 + 0.5 NA intron (NR_135627, intron 1 of 4) CpG 289 NM_001301058 83451 Hs.647045 NM_148912 ENSG00000106077 ABHD11 PP1226|WBSCR21 abhydrolase domain containing 11 protein-coding 181.5-49 chr7 24875312 24875940 + 0.5 NA intron (NR_104111, intron 1 of 21) AluJo|SINE|Alu 16995 NM_145320 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 165-51 chr8 84113814 84114355 + 0.5 NA Intergenic AluSx|SINE|Alu -68703 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 188-31 chr21 18083434 18083857 + 0.5 NA intron (NM_001204178, intron 2 of 5) MSTA-int|LTR|ERVL-MaLR -161188 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 184.833-17 chr2 55387226 55387610 + 0.5 NA intron (NM_001254943, intron 3 of 33) L1MEd|LINE|L1 32438 NM_001365480 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 226.667-12 chr12 13346654 13347244 + 0.5 NA Intergenic Intergenic 29796 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 201.833-2 chr10 21283623 21284149 + 0.5 NA Intergenic Intergenic 89064 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 176.667-57 chr9 27954968 27955703 + 0.5 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -381469 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 178.5-2 chr1 55215805 55216443 + 0.5 NA promoter-TSS (NM_015306) promoter-TSS (NM_015306) 716 NR_038320 100507634 Hs.735428 NR_038320 LOC100507634 - uncharacterized LOC100507634 ncRNA 170-14 chr12 69506294 69506898 + 0.5 NA intron (NM_001278354, intron 2 of 9) intron (NM_001278354, intron 2 of 9) -8844 NR_145803 109623461 NR_145803 SNORA113 - small nucleolar RNA, H/ACA box 113 snoRNA 176.333-36 chrX 41481956 41482393 + 0.5 NA Intergenic Intergenic 34714 NM_022567 60506 Hs.302019 NM_022567 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 183.333 chr1 13965537 13965928 + 0.5 NA Intergenic Intergenic 216317 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 171-49 chr5 26080288 26080727 + 0.5 NA Intergenic Intergenic 889554 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 170.167-43 chr9 34073302 34073848 + 0.5 NA Intergenic AluJr|SINE|Alu -24376 NM_001370059 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 296.833 chr1 201432954 201433850 + 0.5 NA Intergenic AluSx|SINE|Alu -11672 NM_003281 7135 Hs.320890 NM_003281 ENSG00000159173 TNNI1 SSTNI|TNN1 troponin I1, slow skeletal type protein-coding 184.833-27 chr6 126907087 126907633 + 0.5 NA Intergenic MIR|SINE|MIR -211311 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 173.833-7 chr10 25244101 25244581 + 0.5 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -68065 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 203.333 chr1 62285206 62285692 + 0.5 NA intron (NM_181712, intron 1 of 9) intron (NM_181712, intron 1 of 9) 33985 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 201.5-29 chr5 44777907 44778623 + 0.5 NA intron (NR_109863, intron 1 of 3) L1ME3E|LINE|L1 30528 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 184.333-40 chr8 30180136 30180814 + 0.5 NA intron (NM_006571, intron 5 of 6) intron (NM_006571, intron 5 of 6) 24106 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 199.333-43 chr7 3414679 3415429 + 0.5 NA intron (NM_152744, intron 1 of 44) L1MB7|LINE|L1 113802 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 174.167-5 chr11 125887155 125887593 + 0.5 NA 5' UTR (NM_001134793, exon 1 of 3) 5' UTR (NM_001134793, exon 1 of 3) 314 NM_001134793 219844 Hs.98133 NM_145014 ENSG00000198331 HYLS1 HLS HYLS1 centriolar and ciliogenesis associated protein-coding 172.833-21 chr4 37293176 37293625 + 0.5 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 48657 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 181.5-47 chr6 166085342 166085809 + 0.5 NA Intergenic Intergenic -12145 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 164.667-6 chr1 220846302 220846780 + 0.5 NA intron (NR_046901, intron 1 of 2) AluSg|SINE|Alu 17286 NR_110797 101929730 Hs.398159 NR_110797 ENSG00000238078 LINC01352 - long intergenic non-protein coding RNA 1352 ncRNA 170.667-30 chr3 79506935 79507590 + 0.5 NA promoter-TSS (NR_037488) promoter-TSS (NR_037488) -625 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 177-8 chr11 96648147 96649044 + 0.5 NA Intergenic Intergenic 140170 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 165-7 chr10 78964521 78964971 + 0.5 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 102702 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 180.667-17 chr14 53098528 53099165 + 0.5 NA intron (NM_030637, intron 2 of 11) intron (NM_030637, intron 2 of 11) 54477 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 176.333-35 chr8 140028392 140028908 + 0.5 NA intron (NM_001160372, intron 17 of 22) L2c|LINE|L2 71885 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 274-39 chr9 21797594 21798298 + 0.5 NA Intergenic Intergenic -4690 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 201-39 chr8 127746460 127747172 + 0.5 NA Intergenic L2a|LINE|L2 10585 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 211.5 chr1 86394141 86394585 + 0.5 NA intron (NM_001366779, intron 1 of 15) AluSc|SINE|Alu 1698 NM_001366784 57489 Hs.149360 NM_020729 ENSG00000122417 ODF2L - outer dense fiber of sperm tails 2 like protein-coding 248.667-12 chr17 58120453 58121090 + 0.5 NA Intergenic Intergenic -34383 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 167.667-46 chr7 129919650 129920133 + 0.5 NA intron (NM_001202498, intron 1 of 6) L1ME3Cz|LINE|L1 33069 NM_001202498 7328 Hs.643548 NM_003344 ENSG00000186591 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin conjugating enzyme E2 H protein-coding 270.5-22 chr2 210172091 210173188 + 0.5 NA Intergenic Intergenic -1230 NM_152519 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 253.667-24 chr2 157787516 157788104 + 0.5 NA intron (NM_001111067, intron 3 of 10) intron (NM_001111067, intron 3 of 10) 50820 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 167.167-35 chr8 115665756 115666345 + 0.5 NA intron (NM_014112, intron 1 of 6) intron (NM_014112, intron 1 of 6) 1963 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 176.833-28 chr4 75642896 75643384 + 0.5 NA 3' UTR (NM_203505, exon 12 of 12) 3' UTR (NM_203505, exon 12 of 12) -12612 NM_001330724 8999 Hs.591698 NM_003948 ENSG00000138769 CDKL2 KKIAMRE|P56 cyclin dependent kinase like 2 protein-coding 224.667-29 chr2 221134710 221135537 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR 437181 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 206.5-2 chr1 95268925 95269413 + 0.5 NA Intergenic Intergenic 34959 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 209-11 chr12 79737887 79738536 + 0.5 NA Intergenic Intergenic -47114 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 202.833-18 chr22 39882463 39882991 + 0.5 NA intron (NM_152512, intron 2 of 6) AluSg4|SINE|Alu 11033 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 204.833-19 chr4 105888214 105888715 + 0.5 NA Intergenic L4_B_Mam|LINE|RTE-X -7007 NM_001184691 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 181.333-23 chr2 201258943 201259561 + 0.5 NA intron (NR_111983, intron 1 of 8) AluJb|SINE|Alu 1217 NR_111983 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 165.667 chr1 21212055 21212746 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL -35503 NM_001198801 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 172.667-55 chr8 102844693 102845153 + 0.5 NA intron (NM_001363010, intron 2 of 11) intron (NM_001363010, intron 2 of 11) 19240 NM_001301668 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 176-9 chr11 41175539 41175986 + 0.5 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 283874 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 230-13 chr11 64981468 64982043 + 0.5 NA Intergenic L1MA2|LINE|L1 8522 NM_001300808 116071 Hs.124840 NM_138456 ENSG00000168062 BATF2 SARI basic leucine zipper ATF-like transcription factor 2 protein-coding 182.167-5 chr13 77260019 77260656 + 0.5 NA intron (NM_015057, intron 13 of 82) intron (NM_015057, intron 13 of 82) 66757 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 178-9 chr11 59774535 59775062 + 0.5 NA intron (NM_001178040, intron 2 of 9) AluSg|SINE|Alu 19422 NM_001178040 6809 Hs.180711 NM_004177 ENSG00000166900 STX3 STX3A syntaxin 3 protein-coding 173.833-21 chr19 41935059 41935544 + 0.5 NA Intergenic Intergenic 6481 NR_135626 100505585 NR_135626 ENSG00000076928 LOC100505585 - uncharacterized LOC100505585 ncRNA 178.833-19 chr2 69307115 69307603 + 0.5 NA Intergenic CpG 79868 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 192.833-17 chr2 74393439 74394089 + 0.5 NA non-coding (NR_158172, exon 4 of 4) non-coding (NR_158172, exon 4 of 4) -1677 NR_033935 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 168.667-8 chr12 15515103 15515477 + 0.5 NA intron (NM_030667, intron 7 of 26) intron (NM_030667, intron 7 of 26) -31321 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 178.333-36 chr7 10894707 10895202 + 0.5 NA Intergenic L2a|LINE|L2 45199 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 173.667-5 chr10 43094825 43095344 + 0.5 NA intron (NM_020630, intron 1 of 18) intron (NM_020630, intron 1 of 18) -9648 NM_001355216 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 179-28 chr5 19679557 19679972 + 0.5 NA intron (NM_001349562, intron 5 of 13) L1PA15|LINE|L1 206508 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 164.667-13 chr12 46675215 46675608 + 0.5 NA Intergenic Intergenic 150586 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 180.5-24 chr3 48606143 48606684 + 0.5 NA intron (NM_003365, intron 2 of 12) intron (NM_003365, intron 2 of 12) -1263 NR_132776 106635528 NR_132776 SNORA94 - small nucleolar RNA, H/ACA box 94 snoRNA 250.333-6 chr1 172756463 172757067 + 0.5 NA Intergenic L1MD|LINE|L1 97662 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 194.333-9 chr10 90450920 90451335 + 0.5 NA intron (NR_110657, intron 3 of 6) intron (NR_110657, intron 3 of 6) 89678 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 186.833-14 chr3 195307549 195308098 + 0.5 NA intron (NM_012287, intron 11 of 22) intron (NM_012287, intron 11 of 22) -36664 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 192.5-5 chr10 75932654 75933374 + 0.5 NA intron (NR_131178, intron 3 of 7) MamGypsy2-I|LTR|Gypsy 150253 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 167.167-20 chr2 69816512 69816878 + 0.5 NA intron (NM_001320700, intron 9 of 12) intron (NM_001320700, intron 9 of 12) -12965 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 189.5-3 chr1 119184993 119185589 + 0.5 NA intron (NR_125975, intron 4 of 6) L1MA7|LINE|L1 -44619 NM_201263 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 164-52 chr6 114162680 114163302 + 0.5 NA intron (NR_125845, intron 6 of 9) L2a|LINE|L2 -100114 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 177.167-18 chr3 129053905 129054579 + 0.5 NA Intergenic AluJo|SINE|Alu -6525 NM_000174 2815 Hs.1144 NM_000174 ENSG00000169704 GP9 CD42a|GPIX glycoprotein IX platelet protein-coding 166.833-11 chr18 60378573 60379140 + 0.5 NA Intergenic Intergenic -6081 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 177.5-30 chr2 107815974 107816506 + 0.5 NA intron (NR_126370, intron 3 of 4) MLT1H|LTR|ERVL-MaLR 10529 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 183.333-48 chr4 75751992 75752451 + 0.5 NA intron (NM_003715, intron 1 of 23) intron (NM_003715, intron 1 of 23) 27699 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 180.167-7 chr13 33742558 33743265 + 0.5 NA Intergenic L2a|LINE|L2 -66117 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 174.833-4 chr10 11754454 11755188 + 0.5 NA intron (NM_024693, intron 3 of 4) intron (NM_024693, intron 3 of 4) 12439 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 174.833-26 chr8 63370651 63371270 + 0.5 NA Intergenic AluSc|SINE|Alu -94889 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 175.833-5 chr1 202922817 202923306 + 0.5 NA intron (NM_001303109, intron 2 of 9) MIR3|SINE|MIR 4173 NM_021633 59349 Hs.706793 NM_021633 ENSG00000117153 KLHL12 C3IP1|DKIR kelch like family member 12 protein-coding 175-9 chr11 54974334 54974728 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 267699 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 169-41 chr5 53678284 53678755 + 0.5 NA intron (NR_134474, intron 5 of 5) intron (NR_134474, intron 5 of 5) 117880 NM_001318051 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 225-28 chr4 128682985 128683628 + 0.5 NA Intergenic LTR104_Mam|LTR|Gypsy -126394 NM_024900 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 195.333-5 chr10 81471360 81471934 + 0.5 NA Intergenic AluYf1|SINE|Alu -403547 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 171.5-6 chr10 55474929 55475542 + 0.5 NA intron (NM_001354404, intron 2 of 34) MSTB1|LTR|ERVL-MaLR -123807 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 189.333-40 chr8 88720005 88720613 + 0.5 NA Intergenic L1MA9|LINE|L1 -392826 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 186.667-53 chr6 82119813 82120237 + 0.5 NA Intergenic Intergenic -18260 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 179.167-13 chr18 20561566 20562018 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 550021 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 195.833-17 chr20 5243515 5244275 + 0.5 NA Intergenic Intergenic 72837 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 179.333-55 chrX 150581566 150582174 + 0.5 NA intron (NM_000252, intron 1 of 14) MIR|SINE|MIR 13273 NM_000252 4534 Hs.655056 NM_000252 ENSG00000171100 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 208.667-20 chr16 17137713 17138519 + 0.5 NA intron (NR_135179, intron 2 of 2) MIR|SINE|MIR 3612 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 198.5-22 chr2 64661204 64661620 + 0.5 NA Intergenic AluSz6|SINE|Alu -7499 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 167.5-10 chr11 80431040 80431667 + 0.5 NA Intergenic L2a|LINE|L2 331450 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 163.167-33 chr4 122507950 122508408 + 0.5 NA Intergenic Intergenic -51684 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 225.167-21 chr3 151867258 151867739 + 0.5 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) -6145 NM_033050 56670 Hs.133181 NM_033050 ENSG00000198829 SUCNR1 GPR91 succinate receptor 1 protein-coding 171.833-13 chr2 169091392 169092057 + 0.5 NA intron (NM_001142271, intron 3 of 4) intron (NM_001142271, intron 3 of 4) 10617 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 188.833-19 chr2 49830476 49830985 + 0.5 NA Intergenic Intergenic 143473 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 191.5-19 chr15 70803860 70804266 + 0.5 NA Intergenic Intergenic -40505 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 183.333-67 chr9 92576675 92577091 + 0.5 NA intron (NM_001286969, intron 4 of 6) L1ME3B|LINE|L1 -23374 NM_001286971 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 168.167 chr1 164454499 164454953 + 0.5 NA Intergenic AluSx|SINE|Alu -104634 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 169.667-50 chr5 90745220 90745583 + 0.5 NA intron (NR_003149, intron 51 of 89) intron (NR_003149, intron 51 of 89) 186604 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 187.5-12 chr11 113734925 113735409 + 0.5 NA intron (NM_004724, intron 15 of 15) intron (NM_004724, intron 15 of 15) -28794 NR_110047 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 178.833-29 chr3 196711743 196712230 + 0.5 NA promoter-TSS (NM_001166304) promoter-TSS (NM_001166304) 264 NM_032898 84984 Hs.282800 NM_032898 ENSG00000174007 CEP19 C3orf34|MOSPGF centrosomal protein 19 protein-coding 174-21 chr18 59083222 59083601 + 0.5 NA Intergenic Intergenic 47732 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 197.833-11 chr14 62786298 62786749 + 0.5 NA intron (NM_139318, intron 9 of 10) L1MA9|LINE|L1 258935 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 196.5-44 chr8 27810296 27810955 + 0.5 NA intron (NM_001278945, intron 7 of 7) intron (NM_001278945, intron 7 of 7) 27192 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 171-10 chr11 9284595 9285128 + 0.5 NA intron (NR_028491, intron 6 of 7) intron (NR_028491, intron 6 of 7) -19511 NM_001348750 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 187.333-41 chr7 51616838 51617212 + 0.5 NA Intergenic Intergenic -223769 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 180-49 chr5 6171715 6172194 + 0.5 NA Intergenic Intergenic 165338 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 163.5-39 chr5 143251746 143252165 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 59455 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 200.333-9 chr11 33134751 33135295 + 0.5 NA intron (NM_001326, intron 3 of 20) intron (NM_001326, intron 3 of 20) 26457 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 185.167-26 chr7 16887001 16887382 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -5208 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 167.5-5 chr10 9437357 9437799 + 0.5 NA Intergenic MER61E|LTR|ERV1 -141985 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 164.333-39 chr5 82738626 82739283 + 0.5 NA Intergenic Intergenic -101201 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 190.667-24 chr2 38260452 38260923 + 0.5 NA Intergenic Intergenic 115843 NM_001308076 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 170.167-41 chr8 70356668 70357129 + 0.5 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 46492 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 205.167-21 chr3 195540382 195540932 + 0.5 NA intron (NR_133014, intron 1 of 4) MSTC|LTR|ERVL-MaLR 2668 NM_001291505 5504 Hs.535731 NM_006241 ENSG00000184203 PPP1R2 IPP-2|IPP2|PPP1R2A protein phosphatase 1 regulatory inhibitor subunit 2 protein-coding 164.5-46 chr6 54890562 54890942 + 0.5 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 43981 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 191.167-12 chr18 830576 831335 + 0.5 NA Intergenic Intergenic -18713 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 170-21 chr16 51722855 51723518 + 0.5 NA Intergenic Intergenic -39333 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 176.333-33 chr8 28836071 28836550 + 0.5 NA intron (NR_026826, intron 3 of 14) intron (NR_026826, intron 3 of 14) 53605 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 174.167-7 chr14 20452055 20452573 + 0.5 NA intron (NM_017807, intron 2 of 10) intron (NM_017807, intron 2 of 10) 2498 NM_017807 55644 Hs.525196 NM_017807 ENSG00000092094 OSGEP GAMOS3|GCPL1|KAE1|OSGEP1|PRSMG1|TCS3 O-sialoglycoprotein endopeptidase protein-coding 180.833-4 chr11 130668580 130669322 + 0.5 NA Intergenic L2c|LINE|L2 2216 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 183.667-3 chr1 210201260 210201641 + 0.5 NA Intergenic AluJr|SINE|Alu -31346 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 176-2 chr1 11159315 11160018 + 0.5 NA intron (NM_004958, intron 29 of 57) intron (NM_004958, intron 29 of 57) 15768 NR_046600 100873935 Hs.679133 NR_046600 ENSG00000225602 MTOR-AS1 - MTOR antisense RNA 1 ncRNA 200.5-2 chr1 94283755 94284285 + 0.5 NA Intergenic Intergenic -36274 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 215.167-23 chr4 52696859 52697665 + 0.5 NA Intergenic L1PA15|LINE|L1 -15132 NR_145129 57291 Hs.744077 NR_024031 ENSG00000226950 DANCR AGU2|ANCR|KIAA0114|SNHG13|lncRNA-ANCR differentiation antagonizing non-protein coding RNA ncRNA 272.667-15 chr16 65310618 65311462 + 0.5 NA intron (NR_027755, intron 8 of 8) intron (NR_027755, intron 8 of 8) -134467 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 168.833-11 chr19 15224825 15225206 + 0.5 NA Intergenic AluSx3|SINE|Alu 7433 NM_024794 79852 Hs.156457 NM_024794 ENSG00000105131 EPHX3 ABHD9|EH3 epoxide hydrolase 3 protein-coding 234.167-21 chr5 32384011 32384908 + 0.5 NA intron (NM_016107, intron 15 of 19) intron (NM_016107, intron 15 of 19) 10016 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 193.667-19 chr15 44578166 44578614 + 0.5 NA intron (NM_025137, intron 30 of 39) L1MEf|LINE|L1 41243 NM_003758 8669 Hs.404056 NM_003758 ENSG00000104131 EIF3J EIF3S1|eIF3-alpha|eIF3-p35 eukaryotic translation initiation factor 3 subunit J protein-coding 183.667-8 chr11 41202341 41202743 + 0.5 NA intron (NM_001258419, intron 1 of 6) MIRb|SINE|MIR 257094 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 206.833-13 chr22 24896138 24896838 + 0.5 NA intron (NM_001098498, intron 17 of 23) L1MC5|LINE|L1 50207 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 178.5-9 chr11 96537564 96538030 + 0.5 NA Intergenic Intergenic 29372 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 206.5-8 chr11 84397431 84398246 + 0.5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -80499 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 206.833-5 chr14 30569661 30570484 + 0.5 NA intron (NR_151720, intron 2 of 3) L1M4|LINE|L1 7285 NR_151720 105370431 Hs.603980 NR_151720 ENSG00000257636 G2E3-AS1 CAT1647 G2E3 antisense RNA 1 ncRNA 173.5 chr1 31337230 31337688 + 0.5 NA intron (NM_001282574, intron 4 of 6) intron (NM_001282574, intron 4 of 6) 35617 NM_004102 2170 Hs.576372 NM_004102 ENSG00000121769 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3 protein-coding 181.333-4 chr10 110906937 110907462 + 0.5 NA intron (NM_001243783, intron 1 of 2) Charlie2a|DNA|hAT-Charlie 9109 NR_039828 100616113 NR_039828 ENSG00000284482 MIR4680 - microRNA 4680 ncRNA 169.833-26 chr22 27862374 27862769 + 0.5 NA intron (NM_001284278, intron 8 of 11) Tigger10|DNA|TcMar-Tigger 56643 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 178-21 chr2 58068987 58069473 + 0.5 NA intron (NM_001288836, intron 3 of 13) L1MD2|LINE|L1 22518 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 165.167-8 chr12 100093045 100093449 + 0.5 NA intron (NM_001006947, intron 7 of 12) Charlie2b|DNA|hAT-Charlie 49627 NM_015054 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 179.333-48 chr8 63112375 63112848 + 0.5 NA Intergenic FRAM|SINE|Alu -26558 NM_000370 7274 Hs.69049 NM_000370 ENSG00000137561 TTPA ATTP|AVED|TTP1|alphaTTP alpha tocopherol transfer protein protein-coding 165.833-17 chr17 8187908 8188507 + 0.5 NA TTS (NM_017622) TTS (NM_017622) 1262 NR_039746 100616406 NR_039746 ENSG00000283160 MIR4521 mir-4521 microRNA 4521 ncRNA 190.167-13 chr20 45302758 45303262 + 0.5 NA intron (NM_003833, intron 4 of 10) AluSz|SINE|Alu -3830 NM_001281448 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 202-39 chr9 26960332 26960923 + 0.5 NA intron (NM_001099224, intron 1 of 13) intron (NM_001099224, intron 1 of 13) 4215 NM_025103 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 181.667-23 chr2 78019460 78019823 + 0.5 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -64615 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 189.333-8 chr12 38600504 38600999 + 0.5 NA Intergenic Intergenic 283977 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 189.833-4 chr10 115561859 115562623 + 0.5 NA intron (NM_207303, intron 26 of 28) L1MB8|LINE|L1 468876 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 177.833-29 chr4 90852421 90852960 + 0.5 NA intron (NM_001145065, intron 8 of 10) LTR41|LTR|ERVL 617659 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 167.833-29 chr20 44036353 44036829 + 0.5 NA intron (NM_001098797, intron 3 of 8) intron (NM_001098797, intron 3 of 8) 90695 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 165.333-32 chr4 94174307 94174685 + 0.5 NA intron (NR_125922, intron 1 of 8) AluSx|SINE|Alu 33060 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 180.5-11 chr11 14910885 14911579 + 0.5 NA Intergenic L1MEg|LINE|L1 -19027 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 202.333 chr1 14415863 14416493 + 0.5 NA intron (NR_149058, intron 1 of 4) intron (NR_149058, intron 1 of 4) 3795 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 175.667-28 chr2 115258170 115258621 + 0.5 NA intron (NM_001321906, intron 2 of 26) MIRb|SINE|MIR -50842 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 198.667-33 chr4 112523680 112524303 + 0.5 NA intron (NR_161159, intron 1 of 3) CpG -7811 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 286-2 chr1 208259829 208260461 + 0.5 NA Intergenic AluSx|SINE|Alu -15761 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 218.167-13 chr19 18192321 18192811 + 0.5 NA promoter-TSS (NM_032683) promoter-TSS (NM_032683) -652 NM_032683 84769 Hs.515254 NM_032683 ENSG00000254858 MPV17L2 FKSG24 MPV17 mitochondrial inner membrane protein like 2 protein-coding 165.833-38 chr8 140099278 140099764 + 0.5 NA non-coding (NR_144431, exon 1 of 1) non-coding (NR_144431, exon 1 of 1) 1014 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 175.5-53 chr7 88908904 88909311 + 0.5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -113370 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 175.833-19 chr17 49240036 49240486 + 0.5 NA Intergenic Intergenic -7982 NR_034161 124871 Hs.446890 NM_001007529 ENSG00000177369 FLJ40194 - uncharacterized FLJ40194 ncRNA 207.833-24 chr6 27177393 27177817 + 0.5 NA Intergenic CpG 29979 NR_036096 100422934 NR_036096 ENSG00000265565 MIR3143 mir-3143 microRNA 3143 ncRNA 200.333-23 chr2 130365884 130366382 + 0.5 NA intron (NM_014369, intron 5 of 14) MER68|LTR|ERVL 10077 NM_014369 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase non-receptor type 18 protein-coding 179.167-15 chr2 41769876 41770470 + 0.5 NA Intergenic L2|LINE|L2 -107382 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 221.167-6 chr11 7038104 7038633 + 0.5 NA intron (NM_176822, intron 1 of 11) intron (NM_176822, intron 1 of 11) 17899 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 186.167-3 chr10 30015563 30016118 + 0.5 NA 3' UTR (NM_001350001, exon 5 of 5) 3' UTR (NM_001350001, exon 5 of 5) 43746 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 241.5-23 chr7 77335491 77336272 + 0.5 NA intron (NM_001350897, intron 18 of 29) intron (NM_001350897, intron 18 of 29) -79317 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 185.5-21 chr2 104915169 104915839 + 0.5 NA Intergenic LTR82B|LTR|ERVL -42909 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 171.667-28 chr2 110203670 110204042 + 0.5 NA intron (NM_207181, intron 1 of 19) FLAM_A|SINE|Alu 1157 NM_001128179 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 248.667-23 chr3 44338062 44338923 + 0.5 NA promoter-TSS (NM_173826) promoter-TSS (NM_173826) 40 NM_001029839 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 188.167-37 chr8 124040977 124041460 + 0.5 NA promoter-TSS (NR_040044) promoter-TSS (NR_040044) -436 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 194.5-8 chr10 63874889 63875631 + 0.5 NA Intergenic Intergenic -353370 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 214.667-44 chr9 36171585 36172081 + 0.5 NA TTS (NM_005893) TTS (NM_005893) 2445 NM_005893 881 Hs.115460 NM_005893 ENSG00000185972 CCIN BTBD20|KBTBD14 calicin protein-coding 169.667-17 chr11 40096614 40097026 + 0.5 NA Intergenic Intergenic 196310 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 168.667-52 chr9 72500825 72501223 + 0.5 NA Intergenic AluSz|SINE|Alu -20777 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 168.167-14 chr18 58998201 58998611 + 0.5 NA Intergenic UCON39|DNA|TcMar-Tigger -37273 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 177.667-14 chr14 68454558 68455119 + 0.5 NA intron (NM_133509, intron 9 of 10) L1M4|LINE|L1 173949 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 263.5-19 chr2 197523326 197524015 + 0.5 NA exon (NM_001202485, exon 3 of 9) exon (NM_001202485, exon 3 of 9) 7372 NM_001204094 25843 Hs.633165 NM_015387 ENSG00000115540 MOB4 2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 220.667-25 chr20 47625492 47625972 + 0.5 NA intron (NM_181659, intron 5 of 22) intron (NM_181659, intron 5 of 22) 123845 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 174.667-2 chr1 105517974 105518588 + 0.5 NA Intergenic AluY|SINE|Alu 100654 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 181.333-13 chr17 75131292 75131809 + 0.5 NA exon (NM_014595, exon 1 of 5) exon (NM_014595, exon 1 of 5) 192 NR_045513 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 175.5-17 chr13 92184779 92185389 + 0.5 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 167123 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 196.833-21 chr5 43691805 43692395 + 0.5 NA intron (NM_012343, intron 19 of 21) intron (NM_012343, intron 19 of 21) -88870 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 198.5-43 chr8 139064368 139065091 + 0.5 NA Intergenic L2|LINE|L2 -150688 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 198.167-27 chr6 45323438 45323921 + 0.5 NA intron (NM_181356, intron 2 of 12) intron (NM_181356, intron 2 of 12) -4638 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 190.333-34 chr6 46368283 46368733 + 0.5 NA intron (NM_001251973, intron 2 of 4) Tigger3b|DNA|TcMar-Tigger -42616 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 183-11 chr11 92734814 92735212 + 0.5 NA intron (NM_001008781, intron 3 of 24) L2a|LINE|L2 180615 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 221.333-32 chr9 2983385 2983913 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -139554 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 234.333-24 chr22 50582715 50583283 + 0.5 NA promoter-TSS (NM_005198) promoter-TSS (NM_005198) 0 NR_027928 386593 Hs.439777 NR_027928 ENSG00000254413 CHKB-CPT1B CHKL-CPT1B|CPT1-M|CPT1B|CPTI-M CHKB-CPT1B readthrough (NMD candidate) ncRNA 169.5-38 chr6 39163408 39163930 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -48483 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 174.333-25 chr20 55756947 55757492 + 0.5 NA Intergenic Intergenic 248300 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 213.167-33 chr9 25664795 25665265 + 0.5 NA Intergenic Intergenic 13828 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 174.833-3 chr1 185616979 185617519 + 0.5 NA intron (NR_110793, intron 2 of 3) L1MC1|LINE|L1 11239 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 194.333-35 chr8 77838399 77838956 + 0.5 NA Intergenic L1ME2z|LINE|L1 387980 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 171.167-29 chr4 121187077 121187708 + 0.5 NA intron (NM_001128843, intron 2 of 12) intron (NM_001128843, intron 2 of 12) -23071 NM_024873 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 200-3 chr1 155968959 155969560 + 0.5 NA exon (NM_001162383, exon 2 of 22) exon (NM_001162383, exon 2 of 22) 8916 NM_001350111 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|NEDMHM|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding 168-25 chr19 51170150 51170713 + 0.5 NA intron (NR_047529, intron 4 of 6) L1ME4b|LINE|L1 3103 NR_047530 284367 Hs.132045 NR_002804 ENSG00000171101 SIGLEC17P HSPC078|SIGLECP2|SIGLECP3 sialic acid binding Ig like lectin 17, pseudogene pseudo 166.333-55 chr9 87055065 87055662 + 0.5 NA Intergenic L1MA9|LINE|L1 -13237 NR_027471 440173 Hs.127361 NR_027471 ENSG00000269994 LOC440173 - uncharacterized LOC440173 ncRNA 178.5-19 chr16 51859402 51859981 + 0.5 NA Intergenic Intergenic 97172 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 197.5-19 chr20 9169823 9170453 + 0.5 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -47252 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 192.5-37 chr4 88286531 88287032 + 0.5 NA intron (NR_134237, intron 1 of 3) L1ME3A|LINE|L1 1851 NR_134236 105369192 Hs.733660 NR_134236 ENSG00000246375 PPM1K-DT - PPM1K divergent transcript ncRNA 202.333-24 chr3 12846399 12846931 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -5083 NM_001007073 6161 Hs.265174 NM_000994 ENSG00000144713 RPL32 L32|PP9932 ribosomal protein L32 protein-coding 169.833-11 chr12 131948830 131949242 + 0.5 NA promoter-TSS (NM_015409) promoter-TSS (NM_015409) -906 NM_015409 57634 Hs.723478 NM_015409 ENSG00000183495 EP400 CAGH32|P400|TNRC12 E1A binding protein p400 protein-coding 198.333-40 chr6 124394760 124395440 + 0.5 NA intron (NM_153355, intron 3 of 5) intron (NM_153355, intron 3 of 5) 112095 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 167.833-25 chr2 75595768 75596256 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie -26293 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 180-42 chr2 234340354 234340827 + 0.5 NA Intergenic Charlie2b|DNA|hAT-Charlie 114005 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 175.833-21 chr18 61929184 61929769 + 0.5 NA Intergenic Intergenic -36469 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 170.167-9 chr11 102401871 102402357 + 0.5 NA exon (NM_052932, exon 3 of 5) exon (NM_052932, exon 3 of 5) 50651 NM_052932 114908 Hs.503709 NM_052932 ENSG00000152558 TMEM123 KCT3|PORIMIN|PORMIN transmembrane protein 123 protein-coding 179.333-22 chr18 74184015 74184539 + 0.5 NA Intergenic Intergenic 35754 NM_014177 29090 Hs.532835 NM_014177 ENSG00000075336 TIMM21 C18orf55|HSPC154|TIM21 translocase of inner mitochondrial membrane 21 protein-coding 199-24 chr2 77600837 77601325 + 0.5 NA Intergenic Intergenic -78648 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 224.167-3 chr10 31724651 31725179 + 0.5 NA Intergenic LTR78|LTR|ERV1 184011 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 183-28 chr2 120521210 120521836 + 0.5 NA Intergenic Intergenic -55174 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 166-44 chr2 63187380 63187914 + 0.5 NA intron (NR_148705, intron 13 of 16) L1MB2|LINE|L1 -68105 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 197-4 chr1 118185118 118185571 + 0.5 NA promoter-TSS (NM_206996) promoter-TSS (NM_206996) -116 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 196.167-30 chr4 81471943 81472467 + 0.5 NA promoter-TSS (NM_001300735) promoter-TSS (NM_001300735) -298 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 208.833-9 chr15 91303570 91304161 + 0.5 NA Intergenic Intergenic -159474 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 173.5-31 chr18 12827974 12828556 + 0.5 NA intron (NM_080423, intron 4 of 8) HAL1M8|LINE|L1 12697 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 164.5-39 chr3 197096639 197097251 + 0.5 NA intron (NM_001366216, intron 13 of 23) L1M8|LINE|L1 -67128 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 204-33 chr5 138157594 138158102 + 0.5 NA intron (NM_001164326, intron 19 of 19) intron (NM_001164326, intron 19 of 19) -18420 NM_003551 8382 Hs.730856 NM_003551 ENSG00000112981 NME5 NM23-H5|NM23H5|RSPH23 NME/NM23 family member 5 protein-coding 169.833-5 chr11 59768754 59769233 + 0.5 NA intron (NM_001178040, intron 1 of 9) L1PB4|LINE|L1 13617 NM_001178040 6809 Hs.180711 NM_004177 ENSG00000166900 STX3 STX3A syntaxin 3 protein-coding 218.333-25 chr7 44072127 44072864 + 0.5 NA TTS (NR_106897) TTS (NR_106897) 938 NR_106897 102465504 NR_106897 ENSG00000283969 MIR6838 hsa-mir-6838 microRNA 6838 ncRNA 163.333-15 chr12 96966618 96967037 + 0.5 NA Intergenic L1MEc|LINE|L1 59361 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 171.5-31 chr22 19514559 19514982 + 0.5 NA exon (NM_001178011, exon 13 of 18) exon (NM_001178011, exon 13 of 18) 9640 NM_001363066 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 181.333-17 chr19 12758660 12759407 + 0.5 NA TTS (NM_017682) TTS (NM_017682) 7242 NM_017682 54831 Hs.435611 NM_017682 ENSG00000039987 BEST2 VMD2L1 bestrophin 2 protein-coding 183.167-40 chr8 121821594 121822199 + 0.5 NA Intergenic Intergenic -180456 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 175.833-23 chr2 180701405 180701794 + 0.5 NA intron (NR_104323, intron 1 of 5) (AT)n|Simple_repeat|Simple_repeat 9495 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 163.667-22 chr17 70627479 70627874 + 0.5 NA Intergenic Intergenic 458141 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 187.333-38 chr6 153600721 153601213 + 0.5 NA Intergenic Intergenic -409529 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 178-25 chr3 49731182 49731715 + 0.5 NA intron (NM_001006115, intron 3 of 4) intron (NM_001006115, intron 3 of 4) -7474 NM_013334 29925 Hs.567488 NM_013334 ENSG00000173540 GMPPB LGMDR19|MDDGA14|MDDGB14|MDDGC14 GDP-mannose pyrophosphorylase B protein-coding 189-28 chr2 222273304 222273777 + 0.5 NA intron (NM_181457, intron 4 of 7) intron (NM_181457, intron 4 of 7) -24607 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 179.667-29 chr3 161851829 161852515 + 0.5 NA Intergenic HERV30-int|LTR|ERV1 355364 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 181.167-23 chr4 65569617 65570318 + 0.5 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 99521 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 180.667-4 chr1 109108187 109108877 + 0.5 NA intron (NM_001366200, intron 1 of 4) intron (NM_001366200, intron 1 of 4) 4215 NR_158763 127003 Hs.446962 NM_001122961 ENSG00000179902 C1orf194 - chromosome 1 open reading frame 194 protein-coding 202.833-9 chr17 2037996 2038613 + 0.5 NA intron (NR_144476, intron 6 of 12) AluJb|SINE|Alu -3718 NM_080822 124641 Hs.513856 NM_080822 ENSG00000262664 OVCA2 - OVCA2 serine hydrolase domain containing protein-coding 201-40 chr8 133203865 133204473 + 0.5 NA intron (NM_001204870, intron 1 of 1) Tigger8|DNA|TcMar-Tigger 13130 NM_003882 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 172.333-2 chr1 50105219 50105687 + 0.5 NA promoter-TSS (NM_001144775) promoter-TSS (NM_001144775) -778 NM_001144775 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 189.5-11 chr14 66557879 66558618 + 0.5 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 50841 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 173.667-46 chr7 95853963 95854402 + 0.5 NA intron (NM_004411, intron 5 of 16) L1MA8|LINE|L1 81676 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 168-8 chr10 63370867 63371336 + 0.5 NA intron (NM_001322258, intron 2 of 24) AluJr|SINE|Alu 1947 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 170.833-28 chr5 94852362 94852860 + 0.5 NA intron (NM_001002796, intron 17 of 22) intron (NM_001002796, intron 17 of 22) 229255 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 188.167-30 chr5 144311312 144311806 + 0.5 NA intron (NM_001370487, intron 2 of 2) L1ME4a|LINE|L1 106168 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 218.5-14 chr13 39109407 39110122 + 0.5 NA Intergenic Intergenic 71308 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 169.333-34 chr2 120113653 120114180 + 0.5 NA intron (NM_001330310, intron 16 of 24) L1MB7|LINE|L1 100839 NM_001330307 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 163.167-39 chr6 56313329 56313857 + 0.5 NA intron (NM_001318752, intron 1 of 28) MLT1B|LTR|ERVL-MaLR -66013 NM_030820 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 166.833-29 chr7 37255135 37255912 + 0.5 NA intron (NM_001206480, intron 6 of 21) intron (NM_001206480, intron 6 of 21) 98145 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 165.833-5 chr1 199370328 199370718 + 0.5 NA intron (NR_147896, intron 3 of 3) L1MEc|LINE|L1 221925 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 163.833-21 chr18 12863742 12864172 + 0.5 NA intron (NM_080423, intron 1 of 8) L1M5|LINE|L1 20280 NM_002828 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 173-13 chr13 76542437 76542988 + 0.5 NA Intergenic Intergenic 343693 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 180-33 chr19 53772999 53773514 + 0.5 NA Intergenic Intergenic 10912 NR_030222 574500 NR_030222 ENSG00000284362 MIR519A2 MIRN519A-2|MIRN519A2|mir-519a-2 microRNA 519a-2 ncRNA 163.667-15 chr13 23020019 23020405 + 0.5 NA Intergenic MIRb|SINE|MIR -103843 NR_138043 100996930 Hs.380803 NR_138043 LINC00621 - long intergenic non-protein coding RNA 621 ncRNA 194-19 chr17 79072878 79073416 + 0.5 NA Intergenic Intergenic -1790 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 194.167 chr1 74797997 74798459 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -64820 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 204-39 chr8 14867665 14868358 + 0.5 NA intron (NM_139167, intron 1 of 7) L2c|LINE|L2 -14501 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 164.167-55 chr9 76171422 76171841 + 0.5 NA intron (NR_120409, intron 12 of 19) intron (NR_120409, intron 12 of 19) 222795 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 204.5-35 chr9 72965970 72966499 + 0.5 NA Intergenic L1MEg|LINE|L1 -13181 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 169.333-63 chr8 107534194 107534660 + 0.5 NA Intergenic Intergenic -36509 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 196-38 chr5 133654401 133654930 + 0.5 NA Intergenic Intergenic -42124 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 187-25 chr21 36382981 36383447 + 0.5 NA Intergenic AluSz6|SINE|Alu -2178 NM_005441 8208 Hs.75238 NM_005441 ENSG00000159259 CHAF1B CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7 chromatin assembly factor 1 subunit B protein-coding 165.5-4 chr10 13432088 13432818 + 0.5 NA Intergenic AluSc|SINE|Alu 70523 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 216.5-5 chr1 205435058 205435619 + 0.5 NA non-coding (NR_103783, exon 2 of 2) non-coding (NR_103783, exon 2 of 2) 13060 NR_029893 442891 NR_029893 ENSG00000199059 MIR135B MIRN135B|mir-135b microRNA 135b ncRNA 198.833-33 chr9 85148632 85149474 + 0.5 NA Intergenic Intergenic 443152 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 183.5-29 chr3 106540915 106541486 + 0.5 NA Intergenic HERV35I-int|LTR|ERV1 -671799 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 210.5-36 chr8 121792629 121793250 + 0.5 NA Intergenic L1MD2|LINE|L1 -151499 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 274.667-11 chr17 56961939 56962562 + 0.5 NA Intergenic AluSz|SINE|Alu -1200 NM_004645 8161 Hs.532795 NM_004645 ENSG00000121058 COIL CLN80|p80-coilin coilin protein-coding 168.667-51 chr8 121496902 121497371 + 0.5 NA Intergenic Intergenic -142210 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 188.667-23 chr2 64229571 64230171 + 0.5 NA intron (NR_120420, intron 2 of 4) intron (NR_120420, intron 2 of 4) 1470 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 177-29 chr4 121156450 121156908 + 0.5 NA intron (NM_001128843, intron 7 of 12) intron (NM_001128843, intron 7 of 12) 7642 NM_024873 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 178-37 chr6 57126498 57126947 + 0.5 NA intron (NM_015555, intron 4 of 13) AluSx|SINE|Alu 36534 NM_001031623 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 166.167-40 chr9 109610004 109610458 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -30557 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 196.833-4 chr13 53748179 53748833 + 0.5 NA Intergenic Intergenic -66913 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 169.167-34 chrX 38461725 38462142 + 0.5 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -99545 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 203.667-28 chr21 30310450 30310967 + 0.5 NA Intergenic Intergenic 9607 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 201-5 chr12 115361833 115362505 + 0.5 NA Intergenic L1M5|LINE|L1 -677994 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 183.333-51 chr5 42861664 42862109 + 0.5 NA Intergenic L1PB1|LINE|L1 -49810 NM_001093726 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 168.5-41 chr6 150142599 150143098 + 0.5 NA promoter-TSS (NM_030949) promoter-TSS (NM_030949) -196 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 187-6 chr10 28225897 28226530 + 0.5 NA intron (NR_134517, intron 2 of 16) L1MB4|LINE|L1 55910 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 212.833-10 chr17 77517620 77518107 + 0.5 NA Intergenic L1MA7|LINE|L1 -9138 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 222-9 chr11 29271566 29272380 + 0.5 NA Intergenic Intergenic -322440 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 179.5-22 chr17 68767073 68767447 + 0.5 NA Intergenic (ATG)n|Simple_repeat|Simple_repeat 139106 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 217.167-23 chr6 70223461 70224168 + 0.5 NA intron (NM_001851, intron 37 of 37) intron (NM_001851, intron 37 of 37) 59383 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 168.167-11 chr17 47393469 47393881 + 0.5 NA intron (NM_001195192, intron 13 of 21) AluSx|SINE|Alu 69720 NM_001195192 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 175.833-37 chr6 62489075 62489653 + 0.5 NA Intergenic Intergenic -203137 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 179.667-31 chr4 38837719 38838130 + 0.5 NA intron (NM_006068, intron 1 of 1) L1MA4|LINE|L1 18893 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 250.333-21 chr8 26375043 26375741 + 0.5 NA Intergenic AluJb|SINE|Alu 7561 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 200.5-15 chr15 58170570 58170994 + 0.5 NA intron (NM_020980, intron 2 of 5) intron (NM_020980, intron 2 of 5) 32401 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 180.333-55 chr8 136891876 136892265 + 0.5 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 361272 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 173.667-44 chr6 134061526 134062036 + 0.5 NA Intergenic L2a|LINE|L2 -9157 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 188.5-27 chr3 48400492 48401086 + 0.5 NA Intergenic AluJr|SINE|Alu 28570 NM_207102 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 177-10 chr12 21129367 21129802 + 0.5 NA Intergenic Intergenic -1610 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 171.667-51 chr5 156399957 156400364 + 0.5 NA intron (NM_001128209, intron 2 of 7) MER5A|DNA|hAT-Charlie 72996 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 196.167-22 chr2 121782631 121783454 + 0.5 NA Intergenic AluJr4|SINE|Alu 27391 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 181.5-59 chrX 85083350 85084135 + 0.5 NA intron (NM_198450, intron 8 of 8) intron (NM_198450, intron 8 of 8) 25226 NM_001012980 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 227-29 chr8 105664693 105665331 + 0.5 NA intron (NM_001362837, intron 5 of 7) MSTD|LTR|ERVL-MaLR 345469 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 185.833 chr1 46520187 46520753 + 0.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 13471 NM_147192 127343 Hs.375623 NM_147192 ENSG00000197587 DMBX1 MBX|OTX3|PAXB diencephalon/mesencephalon homeobox 1 protein-coding 192.5-41 chr5 148929158 148929551 + 0.5 NA Intergenic Intergenic 102761 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 170.833-14 chr17 72636716 72637224 + 0.5 NA intron (NR_033876, intron 2 of 4) MLT1E3|LTR|ERVL-MaLR 3502 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 170.667-45 chr6 120286328 120286799 + 0.5 NA Intergenic L1MA4|LINE|L1 271384 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 200.667-29 chr2 232533006 232533769 + 0.5 NA intron (NM_001256657, intron 8 of 10) intron (NM_001256657, intron 8 of 10) -6305 NM_005199 1146 Hs.248101 NM_005199 ENSG00000196811 CHRNG ACHRG cholinergic receptor nicotinic gamma subunit protein-coding 177.167-12 chr17 49622183 49622738 + 0.5 NA intron (NM_001007230, intron 4 of 11) intron (NM_001007230, intron 4 of 11) 4129 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 216.667-32 chr3 127699449 127700019 + 0.5 NA intron (NM_001256585, intron 5 of 6) intron (NM_001256585, intron 5 of 6) 26782 NM_172027 80325 Hs.107812 NM_032548 ENSG00000114626 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP|PP2259 ankyrin repeat and BTB domain containing 1 protein-coding 184.167-23 chr20 31312550 31313102 + 0.5 NA Intergenic Intergenic -4241 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 258.5-28 chr8 11960311 11960898 + 0.5 NA Intergenic L1ME3|LINE|L1 13995 NM_001033018 613210 Hs.558285 NM_001033018 ENSG00000205884 DEFB136 DEFB137 defensin beta 136 protein-coding 176.333-10 chr15 96143777 96144222 + 0.5 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -16158 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 174.667-4 chr1 204368529 204369046 + 0.5 NA non-coding (NR_027022, exon 1 of 1) non-coding (NR_027022, exon 1 of 1) 932 NR_027022 127841 Hs.213144 NR_027022 ENSG00000280924 LINC00628 - long intergenic non-protein coding RNA 628 ncRNA 222.167-31 chr4 78958670 78959398 + 0.5 NA Intergenic MamGypLTR1c|LTR|Gypsy -12714 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 178-44 chr8 89692100 89692486 + 0.5 NA Intergenic Intergenic 65418 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 181-3 chr10 91819631 91820028 + 0.5 NA intron (NM_025235, intron 5 of 26) intron (NM_025235, intron 5 of 26) 21403 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 203.667-29 chr3 107827444 107828225 + 0.5 NA Intergenic Intergenic 50234 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 180-20 chr13 96140863 96141240 + 0.5 NA intron (NM_153456, intron 1 of 1) Tigger2|DNA|TcMar-Tigger 50212 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 207.833-17 chr22 26713724 26714338 + 0.5 NA intron (NR_110543, intron 1 of 5) LTR16E1|LTR|ERVL 41188 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 174-3 chr1 80104414 80104962 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -431067 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 208.5-12 chr14 65228743 65229257 + 0.5 NA Intergenic Intergenic -6653 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 195.5-15 chr2 7545118 7545617 + 0.5 NA Intergenic Intergenic 124106 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 192.5-34 chr4 56874290 56875005 + 0.5 NA Intergenic LTR9D|LTR|ERV1 -33253 NM_005612 5978 Hs.307836 NM_005612 ENSG00000084093 REST DFNA27|GINGF5|HGF5|NRSF|WT6|XBR RE1 silencing transcription factor protein-coding 185-25 chr17 80200754 80201392 + 0.5 NA intron (NM_024110, intron 13 of 20) intron (NM_024110, intron 13 of 20) 13273 NM_052819 79092 Hs.675480 NM_024110 ENSG00000141527 CARD14 BIMP2|CARMA2|PRP|PSORS2|PSS1 caspase recruitment domain family member 14 protein-coding 199-58 chr9 38754982 38755505 + 0.5 NA Intergenic Intergenic 134155 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 213.5-4 chr10 61139624 61140111 + 0.5 NA Intergenic Intergenic 123592 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 175.333-3 chr1 175610731 175611328 + 0.5 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 132566 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 184.5-9 chr10 116429396 116430093 + 0.5 NA intron (NM_001011709, intron 1 of 11) intron (NM_001011709, intron 1 of 11) 1897 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 206.5-38 chr2 232129498 232130054 + 0.5 NA intron (NR_046477, intron 6 of 18) intron (NR_046477, intron 6 of 18) -42877 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 163.5-53 chrX 9993586 9994105 + 0.5 NA Intergenic AluY|SINE|Alu -21910 NM_015691 55841 Hs.527524 NM_015691 ENSG00000047644 WWC3 BM042 WWC family member 3 protein-coding 175.5-33 chr20 43926459 43926989 + 0.5 NA intron (NM_001098796, intron 1 of 8) LTR87|LTR|ERVL? 10594 NM_001098796 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 169.667-9 chr10 48551810 48552417 + 0.5 NA intron (NR_144642, intron 3 of 9) MamRep564|Unknown|Unknown -40524 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 190.833-11 chr14 47014716 47015242 + 0.5 NA intron (NM_001113498, intron 8 of 16) Tigger1|DNA|TcMar-Tigger 328267 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 165.333-7 chr10 39329466 39330111 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 633192 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 215.5-5 chr16 3871389 3871868 + 0.5 NA intron (NM_004380, intron 1 of 30) intron (NM_004380, intron 1 of 30) 8492 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 169.667-8 chr10 29214639 29215112 + 0.5 NA Intergenic (ATGAA)n|Simple_repeat|Simple_repeat -74195 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 176.833-3 chr10 36126492 36127167 + 0.5 NA Intergenic Intergenic 348527 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 174.333-15 chr17 59248012 59248423 + 0.5 NA intron (NM_182569, intron 3 of 9) AluJb|SINE|Alu 27706 NM_182569 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 167.667-12 chr16 53799049 53799677 + 0.5 NA intron (NM_001363897, intron 1 of 7) L1MEc|LINE|L1 95207 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 171.167-27 chr4 105452746 105453205 + 0.5 NA intron (NM_176869, intron 3 of 11) intron (NM_176869, intron 3 of 11) 21087 NM_176869 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 178-12 chr16 30408262 30408669 + 0.5 NA intron (NM_001142305, intron 2 of 2) L2b|LINE|L2 859 NM_001142305 51333 Hs.148584 NM_016643 ENSG00000179965 ZNF771 DSC43 zinc finger protein 771 protein-coding 179.833-15 chr17 64335225 64335688 + 0.5 NA intron (NM_000442, intron 14 of 15) intron (NM_000442, intron 14 of 15) 55404 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 175.167-14 chr15 66951142 66951632 + 0.5 NA intron (NR_135687, intron 1 of 2) L1MA5|LINE|L1 5128 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 175.5-2 chr1 28990890 28991560 + 0.5 NA intron (NM_004437, intron 3 of 18) (TA)n|Simple_repeat|Simple_repeat 76649 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 165.167-3 chr1 114981584 114982039 + 0.5 NA intron (NM_001282542, intron 28 of 30) intron (NM_001282542, intron 28 of 30) -48013 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 183.667-48 chr6 41656742 41657234 + 0.5 NA Intergenic Intergenic 18520 NM_001300806 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 166.167-21 chr2 97865415 97866011 + 0.5 NA intron (NM_015348, intron 4 of 40) L1M4b|LINE|L1 130235 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 201.5-21 chr2 64149771 64150309 + 0.5 NA Intergenic Charlie13a|DNA|hAT-Charlie -5620 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 235.167-18 chr2 212888687 212889211 + 0.5 NA Intergenic Intergenic -37308 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 269.167-11 chr21 24045660 24046357 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 275369 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 168.333-56 chr5 123726317 123726939 + 0.5 NA Intergenic L1MA2|LINE|L1 181211 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 215.167-17 chr20 1798768 1799372 + 0.5 NA Intergenic L1MC3|LINE|L1 -19324 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 263-15 chr8 89099837 89100453 + 0.5 NA Intergenic Intergenic 657566 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 315.833-8 chr20 28494777 28495694 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 107430 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 175.833-14 chr13 113897132 113897668 + 0.5 NA intron (NM_001278674, intron 1 of 7) intron (NM_001278674, intron 1 of 7) 2297 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 205.333-40 chr5 159696059 159696582 + 0.5 NA Intergenic Intergenic 175064 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 189-27 chr2 120223117 120223649 + 0.5 NA promoter-TSS (NM_024121) promoter-TSS (NM_024121) 17 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 216.167-6 chr10 72802376 72803204 + 0.5 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 81761 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 204.833-27 chr7 37482785 37483194 + 0.5 NA Intergenic Intergenic -33663 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 198.833-19 chr20 5335356 5336150 + 0.5 NA Intergenic L1MC4|LINE|L1 -19021 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 189.334-13 chr8 90537988 90538802 + 0.5 NA Intergenic Intergenic 67668 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 250.333-19 chr7 49984036 49984770 + 0.5 NA intron (NM_001159878, intron 6 of 7) Tigger4|DNA|TcMar-Tigger 108843 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 178.667-7 chr11 22152728 22153313 + 0.5 NA Intergenic Intergenic -40065 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 172.333-41 chr3 88023161 88023576 + 0.5 NA Intergenic L1MA4|LINE|L1 35628 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 164.833-4 chr12 7676539 7677124 + 0.5 NA Intergenic AluJo|SINE|Alu -6232 NM_001304566 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 163.667-19 chr16 71883824 71884224 + 0.5 NA promoter-TSS (NM_001201553) promoter-TSS (NM_001201553) 148 NM_001318238 55565 Hs.744055 NM_017530 ENSG00000102984 ZNF821 - zinc finger protein 821 protein-coding 168.667-27 chr3 18901403 18902052 + 0.5 NA Intergenic MIRc|SINE|MIR -246783 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 171.833 chr1 15605292 15605823 + 0.5 NA Intergenic MIR|SINE|MIR -11901 NM_032341 84301 Hs.718857 NM_032341 ENSG00000197312 DDI2 - DNA damage inducible 1 homolog 2 protein-coding 187.5-28 chr4 67747789 67748337 + 0.5 NA intron (NM_000406, intron 1 of 2) intron (NM_000406, intron 1 of 2) 8023 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 199.667-26 chr3 81898299 81898768 + 0.5 NA Intergenic Intergenic -87609 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 225.167-2 chr1 59695187 59695667 + 0.5 NA intron (NM_001350790, intron 15 of 16) intron (NM_001350790, intron 15 of 16) 37869 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 167.333-54 chr8 120185669 120186306 + 0.5 NA intron (NM_021110, intron 5 of 47) AluSq2|SINE|Alu 60885 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 179.833-10 chr14 26952751 26953353 + 0.5 NA Intergenic Intergenic 44410 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 176.667 chr1 5621928 5622542 + 0.5 NA Intergenic Intergenic 240506 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 174.5-40 chr9 35554184 35554797 + 0.5 NA intron (NM_014806, intron 2 of 11) intron (NM_014806, intron 2 of 11) 9388 NM_001099951 730112 Hs.98959 NM_001099951 ENSG00000215187 FAM166B - family with sequence similarity 166 member B protein-coding 192.167-4 chr1 204624001 204624454 + 0.5 NA intron (NM_201630, intron 1 of 1) intron (NM_201630, intron 1 of 1) 61511 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 194.833-24 chr6 69966709 69967230 + 0.5 NA intron (NM_001858, intron 11 of 50) intron (NM_001858, intron 11 of 50) 100413 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 230.5-29 chr5 119248984 119249732 + 0.5 NA TTS (NM_001290322) TTS (NM_001290322) -19401 NM_001286817 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 168-35 chr3 150369916 150370501 + 0.5 NA Intergenic Intergenic -38090 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 184.333-44 chr8 130119125 130119771 + 0.5 NA intron (NM_001362925, intron 19 of 29) MLT1K|LTR|ERVL-MaLR -34680 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 203.833-2 chr1 116248967 116249468 + 0.5 NA Intergenic Intergenic -124027 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 173.833-31 chr7 20030447 20030989 + 0.5 NA intron (NR_110114, intron 2 of 5) intron (NR_110114, intron 2 of 5) 109708 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 178.5-16 chr14 82101547 82101979 + 0.5 NA Intergenic Intergenic -358625 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 225.667-12 chr15 72227913 72228794 + 0.5 NA intron (NM_001206798, intron 1 of 10) intron (NM_001206798, intron 1 of 10) 1558 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase M1/2 protein-coding 170-3 chr10 61765100 61765525 + 0.5 NA intron (NM_173554, intron 6 of 6) intron (NM_173554, intron 6 of 6) 102351 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 238.5-32 chr9 27777129 27777770 + 0.5 NA Intergenic Intergenic -203583 NM_001256054 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 199.333-48 chr8 117355426 117356185 + 0.5 NA Intergenic MIR|SINE|MIR -164908 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 183-3 chr1 196145320 196145805 + 0.5 NA Intergenic AluSx|SINE|Alu -56847 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 208.333-24 chr3 20035094 20035647 + 0.5 NA Intergenic Intergenic -5076 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 206.5-26 chr18 9792360 9792817 + 0.5 NA intron (NM_006868, intron 3 of 6) MLT1K|LTR|ERVL-MaLR 84287 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 248-28 chr4 66167357 66168174 + 0.5 NA Intergenic Intergenic -109059 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 163.5-22 chr19 48637803 48638189 + 0.5 NA promoter-TSS (NM_001352) promoter-TSS (NM_001352) -43 NR_004401 653677 Hs.443160 NR_004401 ENSG00000232871 SEC1P SEC1 secretory blood group 1, pseudogene pseudo 239.667-16 chr16 83952817 83953661 + 0.5 NA promoter-TSS (NM_182981) promoter-TSS (NM_182981) -1 NM_182981 29948 Hs.128055 NM_013370 ENSG00000140961 OSGIN1 BDGI|OKL38 oxidative stress induced growth inhibitor 1 protein-coding 210.833-17 chr2 150485476 150486222 + 0.5 NA intron (NM_005168, intron 3 of 5) CpG 1846 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 190.167-4 chr14 61106956 61107351 + 0.5 NA Intergenic Intergenic -125463 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 165.5-47 chrX 11953526 11954031 + 0.5 NA intron (NM_001368398, intron 3 of 18) intron (NM_001368398, intron 3 of 18) -111763 NM_001368402 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 199-61 chr9 131393226 131393711 + 0.5 NA Intergenic Intergenic -36622 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 206.5-20 chr15 97910908 97911412 + 0.5 NA Intergenic Intergenic -36731 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 171-21 chr15 98255788 98256191 + 0.5 NA Intergenic MER5B|DNA|hAT-Charlie 75569 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 164.333-30 chr20 33717311 33717808 + 0.5 NA intron (NM_183397, intron 1 of 2) AluYa5|SINE|Alu 2751 NM_007238 11264 Hs.654857 NM_007238 ENSG00000101417 PXMP4 PMP24 peroxisomal membrane protein 4 protein-coding 187.833-35 chrX 70774467 70774987 + 0.5 NA intron (NM_001003811, intron 10 of 30) L1MA4A|LINE|L1 71568 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 165-11 chr11 58709357 58709750 + 0.5 NA TTS (NM_005838) TTS (NM_005838) 22390 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 205.5-35 chr7 54892665 54893162 + 0.5 NA Intergenic L1ME3C|LINE|L1 -126104 NM_005228 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 199.833-30 chr9 84266599 84267041 + 0.5 NA Intergenic L1ME2z|LINE|L1 73938 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 176.667-31 chr2 224349770 224350371 + 0.5 NA Intergenic L1M5|LINE|L1 51924 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 182.667-47 chr7 80663097 80663526 + 0.5 NA intron (NM_001371079, intron 6 of 13) intron (NM_001371079, intron 6 of 13) 16658 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 205.167-20 chr3 174973901 174974611 + 0.5 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 114922 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 188.167-27 chr4 43190804 43191506 + 0.5 NA Intergenic LTR16E2|LTR|ERVL 297889 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 167.167-29 chr6 84787052 84787417 + 0.5 NA Intergenic Intergenic -22636 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 170.5-36 chr6 41290520 41291064 + 0.5 NA Intergenic MER51-int|LTR|ERV1 -4047 NR_136332 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 199.5-32 chr3 89149889 89150463 + 0.5 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 42555 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 166.667-13 chr12 57454090 57454592 + 0.5 NA promoter-TSS (NM_031479) promoter-TSS (NM_031479) -966 NM_031479 83729 Hs.632713 NM_031479 ENSG00000139269 INHBE - inhibin subunit beta E protein-coding 166.167-7 chr10 34457454 34457880 + 0.5 NA intron (NM_001184789, intron 4 of 22) AluJb|SINE|Alu 357629 NM_001184793 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 186.667-10 chr1 227901919 227902566 + 0.5 NA Intergenic (GTCTCT)n|Simple_repeat|Simple_repeat 39441 NR_049806 100847072 NR_049806 ENSG00000264483 MIR5008 - microRNA 5008 ncRNA 203.5-15 chr14 47987656 47988431 + 0.5 NA Intergenic Tigger4b|DNA|TcMar-Tigger -193029 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 178.333-22 chr20 51194750 51195211 + 0.5 NA Intergenic AluJb|SINE|Alu -171873 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 169.167-30 chr6 151859941 151860566 + 0.5 NA intron (NM_001291230, intron 3 of 8) L1MA9|LINE|L1 51146 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 218.333-29 chr8 4438707 4439170 + 0.5 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 555976 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 167.667-14 chr17 73305391 73305924 + 0.5 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 6344 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 187.5-24 chr20 33979740 33980178 + 0.5 NA Intergenic Intergenic -13952 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 188.833-23 chr2 197783049 197783482 + 0.5 NA intron (NM_197970, intron 1 of 10) FLAM_A|SINE|Alu 2054 NM_033030 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 175.667-35 chr22 26108416 26108892 + 0.5 NA Intergenic Intergenic -60808 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 196.5-25 chr22 23144830 23145395 + 0.5 NA promoter-TSS (NM_004914) promoter-TSS (NM_004914) -212 NM_004914 9609 Hs.353024 NM_004914 ENSG00000100228 RAB36 - RAB36, member RAS oncogene family protein-coding 174-32 chr20 44096476 44096878 + 0.5 NA Intergenic Intergenic 90511 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 172-12 chr13 78160127 78160703 + 0.5 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 105560 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 190.667-20 chr14 68881979 68882770 + 0.5 NA intron (NM_001102, intron 16 of 20) intron (NM_001102, intron 16 of 20) -86131 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 172-53 chr9 34186942 34187341 + 0.5 NA intron (NM_001171201, intron 1 of 5) AluSq2|SINE|Alu 8098 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 286-21 chr6 136845220 136845918 + 0.5 NA intron (NM_000288, intron 3 of 9) intron (NM_000288, intron 3 of 9) 22977 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 170.333-37 chr22 30851338 30851853 + 0.5 NA intron (NM_001282741, intron 1 of 12) L1ME2|LINE|L1 29079 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 171.667-23 chr17 61532553 61533055 + 0.5 NA Intergenic Intergenic 58415 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 186.167-4 chr11 32015494 32016114 + 0.5 NA Intergenic Intergenic 25514 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 168.667-35 chr4 81409215 81409916 + 0.5 NA Intergenic Intergenic 62342 NM_152545 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 194.333-30 chr4 105196467 105196973 + 0.5 NA intron (NM_001127208, intron 2 of 10) L2c|LINE|L2 50035 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 182.333 chr1 59638168 59638715 + 0.5 NA intron (NM_001350794, intron 11 of 14) intron (NM_001350794, intron 11 of 14) 94855 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 191-4 chr1 177282787 177283432 + 0.5 NA TTS (NM_021165) TTS (NM_021165) -68477 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 170.333-23 chr16 2148190 2148563 + 0.5 NA promoter-TSS (NM_014353) promoter-TSS (NM_014353) 232 NM_001308053 25837 Hs.3797 NM_014353 ENSG00000167964 RAB26 V46133 RAB26, member RAS oncogene family protein-coding 181.667-40 chr6 27894971 27895655 + 0.5 NA Intergenic Intergenic 1888 NM_003527 8348 Hs.484991 NM_003527 ENSG00000274641 HIST1H2BO H2B.2|H2B/n|H2BFN|dJ193B12.2 histone cluster 1 H2B family member o protein-coding 196.667-41 chr6 106550743 106551172 + 0.5 NA intron (NM_001371242, intron 13 of 21) intron (NM_001371242, intron 13 of 21) 39102 NM_001624 202 Hs.724262 NM_001624 ENSG00000112297 CRYBG1 AIM1|ST4 crystallin beta-gamma domain containing 1 protein-coding 201.333-24 chr2 140214263 140215028 + 0.5 NA Intergenic Intergenic 372040 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 183.667-27 chr2 78672406 78672785 + 0.5 NA Intergenic MER61A|LTR|ERV1 127064 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 183.667-59 chr9 23147474 23147903 + 0.5 NA Intergenic L1MA1|LINE|L1 501488 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 204.333-22 chr2 191917386 191918020 + 0.5 NA Intergenic Intergenic -70615 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 206.333-36 chr9 27566045 27566514 + 0.5 NA intron (NM_001256054, intron 2 of 10) MIR3|SINE|MIR 7202 NM_018325 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 172.167-2 chr1 170970196 170970638 + 0.5 NA intron (NM_001163629, intron 7 of 21) intron (NM_001163629, intron 7 of 21) 34883 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 241.5-25 chr8 119470274 119470824 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 54103 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 206-16 chr15 89785526 89786105 + 0.5 NA intron (NM_001150, intron 20 of 20) L1MC5a|LINE|L1 9483 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 186.667-32 chr17 61805422 61805825 + 0.5 NA intron (NM_032043, intron 7 of 19) MIR3|SINE|MIR 57936 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 192.667-23 chr2 197815807 197816271 + 0.5 NA intron (NM_006226, intron 1 of 5) Tigger1|DNA|TcMar-Tigger 11446 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 168.5 chr1 14018341 14019012 + 0.5 NA Intergenic MLT2B3|LTR|ERVL 269261 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 182.5-25 chr3 96272791 96273211 + 0.5 NA Intergenic Intergenic -86963 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 189.167-23 chr2 70916092 70916623 + 0.5 NA intron (NM_012476, intron 1 of 2) L1MD2|LINE|L1 15781 NM_012476 25806 Hs.249170 NM_012476 ENSG00000116035 VAX2 DRES93 ventral anterior homeobox 2 protein-coding 208.5-42 chr7 70738153 70738892 + 0.5 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -393622 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 216-31 chr3 51677192 51677710 + 0.5 NA intron (NM_001243727, intron 2 of 3) intron (NM_001243727, intron 2 of 3) 5824 NR_103463 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264, ER-phagy receptor protein-coding 214.333-2 chr1 166435761 166436624 + 0.5 NA Intergenic LTR16|LTR|ERVL 53847 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 177.333-33 chr7 16119809 16120460 + 0.5 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -90352 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 205.333-26 chr21 31362232 31362693 + 0.5 NA intron (NM_001353690, intron 1 of 27) (ATT)n|Simple_repeat|Simple_repeat -18108 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 232.333-8 chr12 106920553 106921281 + 0.5 NA Intergenic MER107|DNA|hAT-Charlie -34805 NM_001319661 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 182.667-38 chr4 37464882 37465247 + 0.5 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 11139 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 165.667-16 chr14 23211310 23211725 + 0.5 NA intron (NM_001370218, intron 2 of 15) L1M4|LINE|L1 26196 NM_001370218 100507650 NM_001282322 ENSG00000215277 RNF212B C14orf164 ring finger protein 212B protein-coding 172-54 chr9 115313468 115313961 + 0.5 NA intron (NR_163556, intron 4 of 7) L1MA1|LINE|L1 171896 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 184.333-3 chr1 168199823 168200498 + 0.5 NA 3' UTR (NM_152902, exon 7 of 7) 3' UTR (NM_152902, exon 7 of 7) 21198 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 198.833-15 chr17 71415104 71415526 + 0.5 NA Intergenic Intergenic -213136 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 167.333 chr1 15266719 15267214 + 0.5 NA intron (NM_052929, intron 2 of 30) L1MC2|LINE|L1 19741 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead associated phosphopeptide binding domain 1 protein-coding 163.667-60 chr9 90336927 90337465 + 0.5 NA intron (NR_109795, intron 2 of 2) L1MCa|LINE|L1 96293 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 181.667-27 chr2 162303697 162304224 + 0.5 NA intron (NM_022168, intron 3 of 15) intron (NM_022168, intron 3 of 15) 14724 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 167-19 chr2 155369410 155369882 + 0.5 NA Intergenic Intergenic 670951 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 215.833 chr1 56412755 56413493 + 0.5 NA Intergenic AluSz6|SINE|Alu -1839 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 176.167-22 chr19 12061652 12062242 + 0.5 NA Intergenic AluY|SINE|Alu -2752 NR_134326 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 175-33 chr2 194153218 194153770 + 0.5 NA Intergenic Intergenic -190775 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 191-8 chr10 71973782 71974371 + 0.5 NA intron (NM_004273, intron 1 of 2) MIR|SINE|MIR 9681 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 168.667-42 chr5 168579256 168579681 + 0.5 NA promoter-TSS (NM_024594) promoter-TSS (NM_024594) -100 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 188.5-33 chr4 96974456 96974981 + 0.5 NA Intergenic Intergenic -392208 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 218.167-5 chr11 78536883 78537383 + 0.5 NA intron (NR_120566, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger 3957 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 214.833-7 chr13 52175556 52176099 + 0.5 NA intron (NR_051965, intron 4 of 7) intron (NR_051965, intron 4 of 7) -15966 NM_001146099 4752 Hs.409989 NM_002498 ENSG00000136098 NEK3 HSPK36 NIMA related kinase 3 protein-coding 169.667-16 chr11 34344431 34344849 + 0.5 NA intron (NM_145804, intron 1 of 16) AluJb|SINE|Alu 13370 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 199-38 chr5 38942805 38943262 + 0.5 NA intron (NM_001285439, intron 37 of 38) intron (NM_001285439, intron 37 of 38) 97021 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 176.833-17 chr18 9220650 9221130 + 0.5 NA intron (NM_001204056, intron 6 of 11) intron (NM_001204056, intron 6 of 11) 83327 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 184-47 chr7 43607997 43608472 + 0.5 NA TTS (NR_146945) TTS (NR_146945) 25126 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 167.833-23 chr19 29654090 29654545 + 0.5 NA Intergenic L1MEf|LINE|L1 -11144 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 210-39 chr6 43562436 43563009 + 0.5 NA TTS (NM_001363658) TTS (NM_001363658) 13316 NM_020750 57510 Hs.203206 NM_020750 ENSG00000124571 XPO5 exp5 exportin 5 protein-coding 189.667-54 chr8 97822140 97822548 + 0.5 NA intron (NM_018407, intron 5 of 6) L1MEb|LINE|L1 46556 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 222.5-36 chr8 120692519 120693143 + 0.5 NA intron (NM_021021, intron 2 of 6) (TATTAA)n|Simple_repeat|Simple_repeat -68422 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 205.167-18 chr3 95472729 95473562 + 0.5 NA Intergenic MER101-int|LTR|ERV1 210048 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 167.5-35 chr6 26020416 26020813 + 0.5 NA exon (NM_003529, exon 1 of 1) exon (NM_003529, exon 1 of 1) 124 NM_003529 8350 Hs.546315 NM_003529 ENSG00000275714 HIST1H3A H3/A|H3FA histone cluster 1 H3 family member a protein-coding 200.167-20 chr4 159764146 159764731 + 0.5 NA intron (NR_146278, intron 1 of 2) intron (NR_146278, intron 1 of 2) 13346 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 192.167-3 chr1 111908191 111908764 + 0.5 NA intron (NM_172198, intron 2 of 6) MIR|SINE|MIR -1180 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 170.667-38 chr5 177077099 177077520 + 0.5 NA intron (NM_001308213, intron 8 of 8) intron (NM_001308213, intron 8 of 8) -9606 NM_001354984 2264 Hs.165950 NM_002011 ENSG00000160867 FGFR4 CD334|JTK2|TKF fibroblast growth factor receptor 4 protein-coding 165.833-3 chr1 60300248 60300665 + 0.5 NA Intergenic L1MB7|LINE|L1 -226686 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 234.667-8 chr13 22801069 22801606 + 0.5 NA Intergenic Intergenic 96844 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 191.333-4 chr10 54376831 54377521 + 0.5 NA intron (NM_001354411, intron 4 of 34) L1ME3G|LINE|L1 -109054 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 164-8 chr10 131323349 131323750 + 0.5 NA Intergenic L1ME2|LINE|L1 -11828 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 175.5-56 chr8 80001517 80001991 + 0.5 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 28505 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 185.667-8 chr10 30572616 30573347 + 0.5 NA Intergenic MER83C|LTR|ERV1 56772 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 185.667-31 chr3 158441138 158441629 + 0.5 NA intron (NM_001271838, intron 6 of 9) intron (NM_001271838, intron 6 of 9) -85325 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 242.5-13 chr12 104182421 104182985 + 0.5 NA Intergenic L2b|LINE|L2 -33076 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 188.833-39 chrX 72283660 72284184 + 0.5 NA Intergenic L1MB4|LINE|L1 -6674 NM_001007 6191 Hs.118076 NM_001007 ENSG00000198034 RPS4X CCG2|DXS306|RPS4|S4|SCAR|SCR10 ribosomal protein S4 X-linked protein-coding 219.167-21 chr9 12465072 12465740 + 0.5 NA Intergenic Intergenic -227979 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 193.333-22 chr16 35156409 35156888 + 0.5 NA Intergenic L1PB3|LINE|L1 13743 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 241.5-26 chr8 122126688 122127392 + 0.5 NA Intergenic Intergenic 441604 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 184-51 chr8 22066616 22067011 + 0.5 NA 5' UTR (NM_001114137, exon 2 of 15) 5' UTR (NM_001114137, exon 2 of 15) 297 NM_001323400 2039 Hs.106124 NM_001978 ENSG00000158856 DMTN DMT|EPB49 dematin actin binding protein protein-coding 165.167-27 chr3 132504778 132505357 + 0.5 NA intron (NM_001329126, intron 42 of 56) MIRb|SINE|MIR 87565 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 192-41 chr7 84388541 84389061 + 0.5 NA Intergenic Intergenic -143675 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 191-16 chr14 43936581 43937210 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 570388 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 183.5-20 chr2 99177327 99177850 + 0.5 NA intron (NM_001320419, intron 1 of 5) L1MA6|LINE|L1 3470 NM_138798 129531 Hs.14222 NM_138798 ENSG00000158411 MITD1 - microtubule interacting and trafficking domain containing 1 protein-coding 170.333-51 chr6 166005884 166006232 + 0.5 NA Intergenic Intergenic -18019 NR_026860 90632 Hs.31917 NR_026860 ENSG00000112541 LINC00473 C6orf176|LNC473|bA142J11.1 long intergenic non-protein coding RNA 473 ncRNA 169.333-50 chr5 19626273 19626725 + 0.5 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 259773 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 189.333-10 chr12 74976692 74977382 + 0.5 NA Intergenic Intergenic 232711 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 321.833-3 chr11 28673627 28674500 + 0.5 NA Intergenic Intergenic -196515 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 210.833-31 chrX 16444979 16445400 + 0.5 NA Intergenic Intergenic 181896 NR_039762 100616428 NR_039762 ENSG00000265144 MIR548AM - microRNA 548am ncRNA 205.833-6 chr11 15055549 15056007 + 0.5 NA Intergenic L2a|LINE|L2 -17815 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 167.667-30 chr3 26953210 26953903 + 0.5 NA Intergenic MER66-int|LTR|ERV1 258999 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 177.5-21 chr15 32995730 32996429 + 0.5 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 72095 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 202.167-18 chr16 79455371 79456128 + 0.5 NA Intergenic AluSx|SINE|Alu 144988 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 178.833-3 chr10 34255213 34255828 + 0.5 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -482840 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 210-14 chr14 47872412 47872950 + 0.5 NA Intergenic Intergenic -77667 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 198-11 chr14 94963311 94964002 + 0.5 NA Intergenic MIR|SINE|MIR 169847 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 368.5-8 chr2 89780600 89781472 + 0.5 NA Intergenic Intergenic -143129 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 171.833-2 chr1 111872653 111873088 + 0.5 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) -15965 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 171.167-15 chr16 22857214 22857582 + 0.5 NA intron (NM_006043, intron 1 of 1) intron (NM_006043, intron 1 of 1) 43236 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 180.5-48 chrX 54640078 54640468 + 0.5 NA Intergenic Intergenic 110054 NM_001184819 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 169.333-9 chr10 17170473 17171013 + 0.5 NA intron (NM_001321007, intron 2 of 11) L1M5|LINE|L1 30929 NM_001351219 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 177.167-35 chr9 85536443 85537088 + 0.5 NA Intergenic Intergenic 205264 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 167.333-18 chr12 20355790 20356335 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -13183 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 189-45 chr4 177057825 177058403 + 0.5 NA Intergenic L1P4|LINE|L1 182412 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 172.667-8 chr10 68702480 68702873 + 0.5 NA Intergenic AluY|SINE|Alu -18563 NR_104262 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 183.833-14 chr2 174924592 174925237 + 0.5 NA intron (NM_001025201, intron 4 of 12) intron (NM_001025201, intron 4 of 12) -77296 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 184.333-24 chr22 43451945 43452620 + 0.5 NA intron (NM_001362786, intron 3 of 6) AluSx|SINE|Alu 35730 NM_001362786 758 Hs.159538 NM_001044370 ENSG00000186732 MPPED1 239AB|C22orf1|FAM1A metallophosphoesterase domain containing 1 protein-coding 167.667-28 chr3 2989667 2990122 + 0.5 NA intron (NM_175607, intron 14 of 24) intron (NM_175607, intron 14 of 24) 71251 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 170.5-11 chr14 50576564 50576998 + 0.5 NA intron (NM_015915, intron 1 of 13) AluJr4|SINE|Alu 16756 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 166.833-19 chr22 31911991 31912564 + 0.5 NA Intergenic Intergenic 26177 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 172.333-13 chr12 45937132 45937562 + 0.5 NA intron (NM_004719, intron 6 of 14) HAL1|LINE|L1 53227 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 165.167-49 chr8 137132392 137132913 + 0.5 NA Intergenic Intergenic 280936 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 185.333-30 chr22 27488972 27489511 + 0.5 NA Intergenic L1MD2|LINE|L1 178590 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 173.833-23 chr22 45145189 45145734 + 0.5 NA intron (NR_038956, intron 1 of 2) L1MB7|LINE|L1 7123 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 204-4 chr1 181135011 181135592 + 0.5 NA Intergenic Intergenic -39183 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 260.5-21 chr6 63635799 63636498 + 0.5 NA promoter-TSS (NM_001290260) promoter-TSS (NM_001290260) -333 NM_001290260 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 188.167-35 chr8 50590786 50591162 + 0.5 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 426843 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 170-30 chr2 45846139 45846817 + 0.5 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 194803 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 220.833-7 chr12 25714107 25714858 + 0.5 NA Intergenic Intergenic -65904 NM_001145727 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 171.167-16 chr16 88357821 88358174 + 0.5 NA Intergenic MIR3|SINE|MIR -69474 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 172.833-31 chr8 88510672 88511293 + 0.5 NA Intergenic L1MA9|LINE|L1 -183499 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 165-49 chr7 37476910 37477319 + 0.5 NA Intergenic Intergenic -27788 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 163.333-14 chr12 92327233 92327686 + 0.5 NA Intergenic Intergenic -94072 NR_027932 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 172.5-21 chr17 82021338 82021764 + 0.5 NA intron (NM_001271006, intron 1 of 4) intron (NM_001271006, intron 1 of 4) 1327 NM_001271006 201254 Hs.37616 NM_144998 ENSG00000169689 CENPX CENP-X|D9|FAAP10|MHF2|STRA13 centromere protein X protein-coding 168-27 chr2 84195083 84195676 + 0.5 NA Intergenic Intergenic -95303 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 171.333-56 chr9 32384551 32385028 + 0.5 NA intron (NM_002197, intron 1 of 20) CpG 146 NM_001362840 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 182.167-32 chr9 38417211 38417905 + 0.5 NA intron (NM_001007563, intron 1 of 4) MER68|LTR|ERVL 6896 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 177.333-10 chr14 72531729 72532220 + 0.5 NA intron (NM_001370288, intron 15 of 16) L1MA8|LINE|L1 15154 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 185.667-10 chr10 98243034 98243455 + 0.5 NA intron (NM_001256620, intron 8 of 8) intron (NM_001256620, intron 8 of 8) 24950 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 187.833-5 chr10 57035490 57036168 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 268730 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 164.5-4 chr1 51998601 51999113 + 0.5 NA Intergenic MIRb|SINE|MIR -8157 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 172.167-32 chrX 49191953 49192454 + 0.5 NA intron (NM_003179, intron 5 of 6) AluSp|SINE|Alu -5830 NM_006150 4007 Hs.732712 NM_006150 ENSG00000012211 PRICKLE3 LMO6|Pk3 prickle planar cell polarity protein 3 protein-coding 214-44 chr5 36097245 36097784 + 0.5 NA TTS (NM_001007527) TTS (NM_001007527) -30632 NM_174914 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 191.5-15 chr15 36700690 36701316 + 0.5 NA intron (NM_032499, intron 9 of 11) AluJr4|SINE|Alu 106126 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 181.333-21 chr2 125244994 125245409 + 0.5 NA Intergenic Intergenic 872784 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 163.667-56 chr8 117720992 117721548 + 0.5 NA Intergenic L1PB4|LINE|L1 199643 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 196.667-29 chr2 157491584 157492107 + 0.5 NA Intergenic Intergenic -47756 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 180.667-22 chr16 81784925 81785333 + 0.5 NA intron (NM_002661, intron 1 of 32) L2|LINE|L2 5838 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 175.167-36 chr5 45579138 45579554 + 0.5 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 117034 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 164.833 chr1 147483432 147484029 + 0.5 NA intron (NR_038423, intron 3 of 3) L1MEc|LINE|L1 34145 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 186.333-23 chr2 111631375 111632093 + 0.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -136573 NR_024373 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 193.667-18 chr14 54279575 54279986 + 0.5 NA Intergenic Intergenic -117088 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 176.667-26 chr2 107572543 107572992 + 0.5 NA Intergenic LTR13|LTR|ERVK 43348 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 178.167-3 chr10 79569729 79570171 + 0.5 NA Intergenic L1ME3|LINE|L1 -9543 NM_001320813 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 214.167-25 chr5 145835415 145835999 + 0.5 NA promoter-TSS (NM_182960) promoter-TSS (NM_182960) -365 NM_138492 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 215.5-24 chr7 32068788 32069557 + 0.5 NA intron (NM_001191059, intron 2 of 18) intron (NM_001191059, intron 2 of 18) 1235 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 167.833-2 chr1 108927014 108927656 + 0.5 NA intron (NM_013296, intron 14 of 14) L1M3|LINE|L1 23113 NM_001278203 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 183.667-32 chr2 167292486 167293065 + 0.5 NA Intergenic CpG 105403 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 211.667-2 chr1 102185819 102186300 + 0.5 NA Intergenic MER67D|LTR|ERV1 -188825 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 212.667-43 chr6 41902246 41902686 + 0.5 NA Intergenic Intergenic -7091 NM_018561 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 164.167-15 chr13 43062290 43062856 + 0.5 NA intron (NM_013238, intron 1 of 5) intron (NM_013238, intron 1 of 5) 38987 NM_013238 29103 Hs.438830 NM_013238 ENSG00000120675 DNAJC15 DNAJD1|HSD18|MCJ DnaJ heat shock protein family (Hsp40) member C15 protein-coding 182.167-29 chr6 143019111 143019767 + 0.5 NA intron (NR_038987, intron 2 of 2) intron (NR_038987, intron 2 of 2) 18143 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 164.333-46 chr7 49638376 49638934 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -134983 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 208.833-20 chr3 94168819 94169493 + 0.5 NA Intergenic MLT1E1|LTR|ERVL-MaLR 106095 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 204.5-12 chr14 50040713 50041223 + 0.5 NA intron (NR_131171, intron 4 of 8) intron (NR_131171, intron 4 of 8) -33448 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 193.167-11 chr14 68032922 68033536 + 0.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 209637 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 182-44 chr6 163910678 163911079 + 0.5 NA Intergenic L1MEf|LINE|L1 -239394 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 221.667-2 chr1 115243346 115243893 + 0.5 NA Intergenic Intergenic -39415 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 178.833-14 chr16 2261159 2261680 + 0.5 NA intron (NM_006711, intron 6 of 7) PABL_A-int|LTR|ERV1 5918 NM_001286625 10921 Hs.355643 NM_006711 ENSG00000205937 RNPS1 E5.1 RNA binding protein with serine rich domain 1 protein-coding 165.667-49 chr6 162735443 162735841 + 0.5 NA intron (NM_001080379, intron 1 of 4) L1ME3A|LINE|L1 7672 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 190.333-30 chr4 48800674 48801258 + 0.5 NA Intergenic AluJr|SINE|Alu -20667 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 227.833-15 chr3 194414859 194415357 + 0.5 NA intron (NM_001367549, intron 31 of 33) L2|LINE|L2 -15842 NM_004488 2814 Hs.73734 NM_004488 ENSG00000178732 GP5 CD42d|GPV glycoprotein V platelet protein-coding 223.333-31 chr4 65374638 65375192 + 0.5 NA intron (NM_182472, intron 8 of 16) intron (NM_182472, intron 8 of 16) 294573 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 192.5-10 chr11 124573426 124573894 + 0.5 NA Intergenic L1MC1|LINE|L1 3663 NM_001005194 390275 Hs.632104 NM_001005194 ENSG00000196119 OR8A1 OR11-318|OST025 olfactory receptor family 8 subfamily A member 1 protein-coding 184.333-20 chr19 29419611 29420079 + 0.5 NA intron (NR_040029, intron 2 of 9) MIRb|SINE|MIR 105907 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 167.5-32 chr5 142143669 142144104 + 0.5 NA intron (NM_030571, intron 6 of 7) AluJo|SINE|Alu 35107 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 228.667-52 chr8 91260194 91260839 + 0.5 NA intron (NM_134266, intron 2 of 18) MER81|DNA|hAT-Blackjack 11197 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 211.333-40 chr5 85625706 85626226 + 0.5 NA Intergenic Intergenic -656478 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 209-8 chr11 76229972 76230617 + 0.5 NA Intergenic Intergenic -23792 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 195.833-4 chr10 126507626 126508339 + 0.5 NA intron (NM_001004298, intron 2 of 8) intron (NM_001004298, intron 2 of 8) 13511 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 206-35 chr8 27920494 27921019 + 0.5 NA intron (NM_173833, intron 4 of 8) AluJr|SINE|Alu -34640 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 216.167-28 chr9 136109299 136110139 + 0.5 NA Intergenic Intergenic 8712 NM_001256526 90120 Hs.287411 NM_152833 ENSG00000238227 TMEM250 C9orf69 transmembrane protein 250 protein-coding 175.333-22 chr16 79829035 79829406 + 0.5 NA Intergenic Intergenic 33971 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 168.333-46 chr3 123985178 123985887 + 0.5 NA intron (NR_133917, intron 1 of 2) intron (NR_133917, intron 1 of 2) 5820 NM_017578 54763 Hs.567516 NM_017578 ENSG00000065371 ROPN1 CT91|ODF6|RHPNAP1|ROPN1A|ropporin rhophilin associated tail protein 1 protein-coding 170-39 chr4 55289643 55290209 + 0.5 NA Intergenic MLT2D|LTR|ERVL -56316 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 163.5-27 chr2 232652432 232652873 + 0.5 NA intron (NM_001308395, intron 2 of 4) MIRc|SINE|MIR 19048 NM_001308395 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 212-19 chr13 26078998 26079818 + 0.5 NA Intergenic Intergenic -19886 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 177-20 chr2 34036712 34037129 + 0.5 NA intron (NR_126403, intron 4 of 5) Helitron3Na_Mam|RC|Helitron -30306 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 171.333-45 chr6 12333267 12333812 + 0.5 NA Intergenic AluSc5|SINE|Alu 43178 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 197.5-5 chr10 122988536 122989326 + 0.5 NA intron (NM_153336, intron 6 of 6) L1MB8|LINE|L1 8530 NM_001363531 118672 Hs.281004 NM_153336 ENSG00000179988 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 179.167-28 chr8 118011748 118012233 + 0.5 NA intron (NM_000127, intron 1 of 10) (CAG)n|Simple_repeat|Simple_repeat -91077 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 174.667-23 chr19 44323964 44324421 + 0.5 NA Intergenic L1MCc|LINE|L1 -19167 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 217-30 chr7 7597941 7598437 + 0.5 NA intron (NM_001370078, intron 7 of 8) MIR|SINE|MIR 30163 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 186.333-18 chr14 95449122 95449638 + 0.5 NA intron (NM_001363692, intron 7 of 16) MLT1L|LTR|ERVL-MaLR 26455 NM_152592 161176 Hs.41502 NM_024633 ENSG00000176438 SYNE3 C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3 spectrin repeat containing nuclear envelope family member 3 protein-coding 177.5-15 chr12 91356152 91356673 + 0.5 NA Intergenic Intergenic -173595 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 185.833-23 chr5 24235386 24235967 + 0.5 NA Intergenic Intergenic 284328 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 172.5-20 chr17 43456987 43457394 + 0.5 NA Intergenic MIRc|SINE|MIR 12384 NR_031751 100313779 NR_031751 ENSG00000284344 MIR2117 - microRNA 2117 ncRNA 230-27 chr2 215241307 215241974 + 0.5 NA Intergenic L1MC4|LINE|L1 -70419 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 186.667-9 chr1 213738983 213739662 + 0.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -185427 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 168.5-26 chr2 182541672 182542032 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -19007 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 184.167-9 chr12 55189971 55190568 + 0.5 NA Intergenic Intergenic -30756 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 182.167-11 chr18 75106606 75106978 + 0.5 NA Intergenic Intergenic 98721 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 202.167-31 chr5 27191198 27191889 + 0.5 NA Intergenic L1M4|LINE|L1 -152957 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 197.5-34 chr7 49166736 49167234 + 0.5 NA Intergenic MIRb|SINE|MIR 242438 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 177.333-27 chr4 180921415 180922007 + 0.5 NA Intergenic Intergenic 237438 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 184.833-32 chr9 32071937 32072652 + 0.5 NA Intergenic L2a|LINE|L2 -312309 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 166.5-15 chr13 114314099 114314524 + 0.5 NA promoter-TSS (NM_032436) promoter-TSS (NM_032436) -192 NM_001164144 283489 Hs.7542 NM_032436 ENSG00000198824 CHAMP1 C13orf8|CAMP|CHAMP|MRD40|ZNF828 chromosome alignment maintaining phosphoprotein 1 protein-coding 200.333-5 chr1 96776189 96776709 + 0.5 NA intron (NM_001300985, intron 5 of 13) intron (NM_001300985, intron 5 of 13) 53811 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 188.5-46 chr7 16471813 16472260 + 0.5 NA Intergenic Intergenic -6298 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 182.667-26 chr2 86581705 86582327 + 0.5 NA intron (NM_001198954, intron 3 of 7) L1ME3|LINE|L1 -18573 NR_036454 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 250.667-17 chr2 7865641 7866392 + 0.5 NA Intergenic Intergenic 33639 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 191-50 chr8 119134466 119134942 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -65922 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 192-29 chr5 670104 670829 + 0.5 NA intron (NM_007030, intron 2 of 3) intron (NM_007030, intron 2 of 3) 22886 NM_007030 11076 Hs.481466 NM_007030 ENSG00000171368 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 194-22 chr2 49934853 49935512 + 0.5 NA intron (NM_001330097, intron 5 of 5) MIRb|SINE|MIR 39021 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 177.167-14 chr2 86703670 86704283 + 0.5 NA intron (NM_001198954, intron 1 of 7) LTR3B|LTR|ERVK -16315 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 264.167-3 chr1 177976323 177977104 + 0.5 NA intron (NR_151492, intron 8 of 22) MIR|SINE|MIR -6469 NM_001356499 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 241.667-16 chr2 44956278 44957081 + 0.5 NA Intergenic MIRc|SINE|MIR -14801 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 228.167-23 chr4 101187685 101188445 + 0.5 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 52807 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 190.5-56 chr9 14325933 14326425 + 0.5 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) -3792 NM_001369472 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 169.5-49 chrX 55901220 55901742 + 0.5 NA Intergenic L1MA9|LINE|L1 -6642 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 164-49 chr6 43630040 43630577 + 0.5 NA intron (NM_001003690, intron 1 of 3) intron (NM_001003690, intron 1 of 3) 766 NM_001003690 9587 Hs.122346 NM_014628 ENSG00000124688 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 168.833-21 chr6 146972359 146972712 + 0.5 NA intron (NR_034115, intron 6 of 10) intron (NR_034115, intron 6 of 10) -168711 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 192-13 chr14 49465628 49466071 + 0.5 NA Intergenic Intergenic 120531 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 166.667-55 chrX 152913039 152913817 + 0.5 NA Intergenic Intergenic -1014 NM_007150 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 with LIM domain protein-coding 309.5-10 chr20 47934948 47935815 + 0.5 NA Intergenic Intergenic -47845 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 168-26 chr2 60567434 60567810 + 0.5 NA Intergenic Intergenic -13968 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 171.667-5 chr1 176842408 176843010 + 0.5 NA 3' UTR (NM_020318, exon 23 of 23) 3' UTR (NM_020318, exon 23 of 23) 186736 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 172-29 chr20 33169055 33169717 + 0.5 NA intron (NM_001319164, intron 2 of 8) intron (NM_001319164, intron 2 of 8) 1227 NM_080574 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 165-19 chr14 66995018 66995419 + 0.5 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -194222 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 179.833-23 chr3 56889098 56889538 + 0.5 NA intron (NM_001128615, intron 3 of 12) intron (NM_001128615, intron 3 of 12) 27118 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 185.333-41 chr6 47809696 47810249 + 0.5 NA intron (NR_033806, intron 5 of 6) intron (NR_033806, intron 5 of 6) 22904 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 215.333-6 chr1 206979558 206980199 + 0.5 NA Intergenic MIR|SINE|MIR -9253 NM_032029 83953 Hs.145519 NM_032029 ENSG00000162897 FCAMR CD351|FCA/MR|FKSG87 Fc fragment of IgA and IgM receptor protein-coding 169-38 chr4 39527196 39527678 + 0.5 NA promoter-TSS (NM_001184701) promoter-TSS (NM_001184701) 2 NM_001184701 7358 Hs.572518 NM_003359 ENSG00000109814 UGDH GDH|UDP-GlcDH|UDPGDH|UGD UDP-glucose 6-dehydrogenase protein-coding 186.667-41 chr22 46089046 46089434 + 0.5 NA intron (NR_110479, intron 1 of 4) intron (NR_110479, intron 1 of 4) -1804 NR_037413 100500828 NR_037413 ENSG00000266533 MIR3619 - microRNA 3619 ncRNA 232.333-22 chr6 133783213 133783971 + 0.5 NA intron (NR_109982, intron 2 of 8) L1ME3E|LINE|L1 -37555 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 181.833-15 chr22 39199785 39200167 + 0.5 NA Intergenic L1MD1|LINE|L1 40933 NM_033016 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 173.833-36 chr9 77909999 77910486 + 0.5 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) 121569 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 174.167-27 chr22 35655585 35656033 + 0.5 NA intron (NM_030641, intron 1 of 2) MER34B|LTR|ERV1 7363 NM_030641 80830 Hs.257352 NM_030641 ENSG00000221963 APOL6 APOL-VI|APOLVI apolipoprotein L6 protein-coding 167.667-47 chr8 61010227 61010664 + 0.5 NA Intergenic MER53|DNA|hAT -42697 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 167.667-24 chr21 43612440 43612916 + 0.5 NA intron (NM_007031, intron 7 of 8) intron (NM_007031, intron 7 of 8) -2689 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 262.5-13 chr17 71607892 71608694 + 0.5 NA Intergenic Intergenic -406114 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 178.5-5 chr10 82863693 82864309 + 0.5 NA intron (NR_163253, intron 5 of 10) intron (NR_163253, intron 5 of 10) -631081 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 229.666-6 chr4 61395405 61396138 + 0.5 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 193599 NM_001371342 191.167-17 chr2 223400420 223401080 + 0.5 NA Intergenic Intergenic 201611 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 246.167-32 chr6 107462715 107463617 + 0.5 NA Intergenic L1MC5a|LINE|L1 -3602 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 171.833-21 chr4 158680574 158681015 + 0.5 NA intron (NM_004453, intron 2 of 12) Tigger3b|DNA|TcMar-Tigger -1314 NM_001281738 2110 Hs.155729 NM_004453 ENSG00000171503 ETFDH ETFQO|MADD electron transfer flavoprotein dehydrogenase protein-coding 176.833-8 chr11 105356889 105357467 + 0.5 NA Intergenic L1M4b|LINE|L1 -217409 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 184.5-54 chr8 139655938 139656599 + 0.5 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 46855 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 166.333-19 chr14 104008753 104009225 + 0.5 NA intron (NM_153046, intron 20 of 35) Tigger3b|DNA|TcMar-Tigger -66460 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 165.833-33 chr5 145868172 145868695 + 0.5 NA intron (NM_001080516, intron 1 of 2) intron (NM_001080516, intron 1 of 2) 4535 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin and cysteine rich domain containing 2 protein-coding 167.333-48 chr6 71192308 71192974 + 0.5 NA Intergenic Intergenic -96170 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 211.833-21 chr8 138636862 138637345 + 0.5 NA intron (NM_152888, intron 47 of 64) intron (NM_152888, intron 47 of 64) -139373 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 228-17 chr14 91950654 91951183 + 0.5 NA Intergenic L3|LINE|CR1 -3216 NM_006329 10516 Hs.332708 NM_006329 ENSG00000140092 FBLN5 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|HNARMD|UP50 fibulin 5 protein-coding 168.5-2 chr1 52919325 52919753 + 0.5 NA intron (NM_001319958, intron 1 of 9) Tigger3c|DNA|TcMar-Tigger 2201 NM_001319958 55268 Hs.476319 NM_018281 ENSG00000121310 ECHDC2 - enoyl-CoA hydratase domain containing 2 protein-coding 164.5-59 chr9 100368885 100369404 + 0.5 NA Intergenic LTR22C|LTR|ERVK -16202 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 183-35 chr4 134883483 134884284 + 0.5 NA Intergenic Intergenic 239676 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 174-18 chr17 75171343 75171945 + 0.5 NA intron (NM_001005849, intron 2 of 2) intron (NM_001005849, intron 2 of 2) 11315 NM_006937 6613 Hs.380973 NM_006937 ENSG00000188612 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin like modifier 2 protein-coding 171.5-35 chr3 185102675 185103255 + 0.5 NA intron (NM_001025266, intron 1 of 1) AluSx|SINE|Alu 50095 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 191.167-7 chr11 83244351 83244907 + 0.5 NA intron (NM_182603, intron 9 of 9) MER20|DNA|hAT-Charlie 41778 NM_001286119 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 266.833 chr1 220271957 220272771 + 0.5 NA promoter-TSS (NM_012414) promoter-TSS (NM_012414) 89 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 202.167-27 chr3 37809960 37810598 + 0.5 NA intron (NM_002207, intron 27 of 27) intron (NM_002207, intron 27 of 27) 51501 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 168.333-4 chr1 156820988 156821368 + 0.5 NA intron (NM_001007792, intron 1 of 16) L1PB2|LINE|L1 -4330 NM_001161444 9047 Hs.103527 NM_003975 ENSG00000027869 SH2D2A F2771|SCAP|TSAD|VRAP SH2 domain containing 2A protein-coding 258.833-10 chr3 118763195 118763909 + 0.5 NA intron (NR_135547, intron 1 of 3) L1M5|LINE|L1 47281 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 172.833-2 chr1 99914778 99915253 + 0.5 NA intron (NM_000028, intron 30 of 33) AluJo|SINE|Alu -54981 NM_001271684 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 307.167-23 chr5 112419599 112420433 + 0.5 NA promoter-TSS (NR_144931) promoter-TSS (NR_144931) 433 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 170.667-21 chr2 81667224 81667711 + 0.5 NA Intergenic Intergenic -200521 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 166.333-27 chr19 21060881 21061443 + 0.5 NA Intergenic Intergenic -20985 NR_117087 148206 Hs.729186 NM_182515 ENSG00000160352 ZNF714 - zinc finger protein 714 protein-coding 210.5-13 chr14 69191414 69191978 + 0.5 NA promoter-TSS (NM_001193362) promoter-TSS (NM_001193362) -70 NM_001193362 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 267.5-23 chr2 43229746 43230478 + 0.5 NA TTS (NM_001345923) TTS (NM_001345923) 2901 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 219.833-26 chr8 28111142 28112006 + 0.5 NA intron (NM_018091, intron 6 of 14) intron (NM_018091, intron 6 of 14) 18435 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 179.333-19 chr17 55975058 55975446 + 0.5 NA Intergenic L2b|LINE|L2 -178223 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 242.167-18 chr20 24773123 24773869 + 0.5 NA Intergenic Intergenic -175773 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 192.5-40 chr5 94997350 94997971 + 0.5 NA intron (NM_001297777, intron 2 of 19) L1MC1|LINE|L1 84206 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 216.333-5 chr1 246754329 246755083 + 0.5 NA intron (NM_016002, intron 5 of 11) L1M4|LINE|L1 30297 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 212.167-13 chr4 72306570 72307144 + 0.5 NA intron (NM_014243, intron 15 of 21) intron (NM_014243, intron 15 of 21) 262364 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 182.667-49 chr8 107399702 107400385 + 0.5 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -63528 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 171-9 chr1 227255437 227256012 + 0.5 NA intron (NM_001366019, intron 1 of 36) L1MB4|LINE|L1 62768 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 228.833-11 chr20 56899770 56900350 + 0.5 NA Intergenic MER110|LTR|ERV1 270754 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 175.667-7 chr10 38502659 38503155 + 0.5 NA Intergenic Intergenic 74761 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 259.833-5 chr12 53240439 53241099 + 0.5 NA Intergenic Intergenic -8513 NM_001243730 5916 Hs.1497 NM_000966 ENSG00000172819 RARG NR1B3|RARC retinoic acid receptor gamma protein-coding 190-4 chr1 185465685 185466104 + 0.5 NA Intergenic Intergenic -130855 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 166.5-32 chr5 76402812 76403255 + 0.5 NA promoter-TSS (NM_006633) promoter-TSS (NM_006633) -252 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 215.833-12 chr17 77003695 77004310 + 0.5 NA Intergenic LTR24C|LTR|ERV1 -34803 NR_136417 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 221.667-6 chr10 33162419 33163058 + 0.5 NA Intergenic MIRc|SINE|MIR -45931 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 180.667-50 chr9 134952665 134953235 + 0.5 NA Intergenic AluSc|SINE|Alu -35038 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 181.167-36 chr9 114950065 114950725 + 0.5 NA Intergenic MIRb|SINE|MIR -19800 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 236.833-21 chr6 41442542 41443352 + 0.5 NA Intergenic Intergenic -59497 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 167-28 chr3 179919045 179919445 + 0.5 NA intron (NR_110061, intron 3 of 3) intron (NR_110061, intron 3 of 3) 19708 NR_110061 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 200.167-15 chr20 45344398 45344895 + 0.5 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 3778 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 184.333-10 chr12 71216798 71217444 + 0.5 NA Intergenic Intergenic -59122 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 193.333-31 chr2 79072713 79073402 + 0.5 NA Intergenic Intergenic 14936 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 182-41 chr6 11497650 11498354 + 0.5 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -39747 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 166.167-4 chr1 215914252 215914667 + 0.5 NA intron (NM_206933, intron 38 of 71) intron (NM_206933, intron 38 of 71) -158006 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 212.333-18 chr3 51383847 51384564 + 0.5 NA TTS (NM_004947) TTS (NM_004947) -1086 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 176.667-4 chr1 94650423 94650883 + 0.5 NA intron (NR_160780, intron 3 of 5) intron (NR_160780, intron 3 of 5) 95247 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 168.667-48 chr8 88061738 88062301 + 0.5 NA intron (NM_005941, intron 7 of 9) intron (NM_005941, intron 7 of 9) -188004 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 203.167-37 chr9 92985952 92986552 + 0.5 NA intron (NM_001369952, intron 3 of 16) MER50-int|LTR|ERV1 11783 NM_001369952 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 188.667-20 chr19 51588474 51589239 + 0.5 NA 3' UTR (NM_007147, exon 5 of 5) 3' UTR (NM_007147, exon 5 of 5) 5524 NR_034159 729975 Hs.716785 NR_034159 LINC01530 - long intergenic non-protein coding RNA 1530 ncRNA 164.5-31 chr2 120790430 120790902 + 0.5 NA intron (NM_001371271, intron 1 of 13) intron (NM_001371271, intron 1 of 13) -1615 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 167.333-22 chr13 36796754 36797210 + 0.5 NA Intergenic Intergenic -22220 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 181.333-20 chr2 119630486 119631067 + 0.5 NA exon (NM_001271049, exon 19 of 24) exon (NM_001271049, exon 19 of 24) -48391 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 194.167-5 chr10 31836269 31836917 + 0.5 NA intron (NM_001270696, intron 7 of 17) intron (NM_001270696, intron 7 of 17) 72333 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 195.167-22 chr18 13681510 13681959 + 0.5 NA exon (NM_001098801, exon 3 of 5) exon (NM_001098801, exon 3 of 5) 39976 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 175.833-6 chr1 205543102 205543548 + 0.5 NA Intergenic Intergenic -25689 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 195.833-15 chr2 54764441 54764857 + 0.5 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 39637 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 192.833-26 chr4 26084157 26084603 + 0.5 NA Intergenic Intergenic 170188 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 234-27 chr3 78318395 78318959 + 0.5 NA Intergenic MER34|LTR|ERV1 -269714 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 167.667-35 chr5 157994657 157995150 + 0.5 NA Intergenic Intergenic -135758 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 222-6 chr1 212234932 212235815 + 0.5 NA promoter-TSS (NR_125982) promoter-TSS (NR_125982) -637 NR_125983 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 173.167-12 chr12 102946547 102946961 + 0.5 NA intron (NM_001354304, intron 1 of 13) L1M1|LINE|L1 -10920 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 202.5-9 chr10_GL383545v1_alt 62046 62599 + 0.5 NA intron (NR_138082, intron 1 of 1) intron (NR_138082, intron 1 of 1) 59304 NR_138082 101060171 Hs.568842 NR_138082 ARMC4P1 - armadillo repeat containing 4 pseudogene 1 pseudo 188.833-38 chr9 1921347 1921997 + 0.5 NA Intergenic AluY|SINE|Alu -93675 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 185.833-8 chr14 65118397 65118956 + 0.5 NA Intergenic Intergenic -15981 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 199.5-4 chr10 28539955 28540479 + 0.5 NA intron (NM_100486, intron 3 of 12) MIRc|SINE|MIR 7099 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 215.167-6 chr10 77164984 77165444 + 0.5 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 24383 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 170.333-32 chr2 223727829 223728290 + 0.5 NA Intergenic AluSg4|SINE|Alu 109523 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 166.833-18 chr22 19441924 19442404 + 0.5 NA TTS (NM_173793) TTS (NM_173793) 6068 NM_001166242 128977 Hs.659565 NM_173793 ENSG00000242259 C22orf39 - chromosome 22 open reading frame 39 protein-coding 180.333-21 chr16 77371549 77371994 + 0.5 NA intron (NM_199355, intron 3 of 22) L1MA6|LINE|L1 63263 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 167.833-18 chr15 87877475 87877870 + 0.5 NA intron (NM_002530, intron 18 of 18) intron (NM_002530, intron 18 of 18) 68596 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 186.167-15 chr2 173358796 173359445 + 0.5 NA intron (NM_145810, intron 2 of 8) intron (NM_145810, intron 2 of 8) 4248 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 174.333-35 chr6 37337038 37337431 + 0.5 NA Intergenic L1MB2|LINE|L1 -16749 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 166.333-17 chr12 100235192 100235667 + 0.5 NA intron (NR_135073, intron 9 of 10) L1PB1|LINE|L1 31650 NM_152317 120863 Hs.653118 NM_152317 ENSG00000166153 DEPDC4 DEP.4 DEP domain containing 4 protein-coding 166.5-35 chr6 64780397 64780869 + 0.5 NA intron (NM_001292009, intron 22 of 43) L1PA17|LINE|L1 -520785 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 165.667-50 chr6 164577939 164578452 + 0.5 NA Intergenic AluY|SINE|Alu 243868 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 198.667-29 chr3 17753691 17754361 + 0.5 NA Intergenic Intergenic 11082 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 165-48 chr7 27676563 27676976 + 0.5 NA Intergenic MIR|SINE|MIR -13886 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 167.667-25 chr22 16781476 16781965 + 0.5 NA Intergenic L1MA8|LINE|L1 -33282 NR_134584 101929350 Hs.561087 NR_134584 ENSG00000235343 LINC01665 - long intergenic non-protein coding RNA 1665 ncRNA 185.667-13 chr11 37323005 37323543 + 0.5 NA Intergenic Intergenic -615327 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 165.167 chr1 40767309 40767970 + 0.5 NA intron (NM_001142588, intron 9 of 10) intron (NM_001142588, intron 9 of 10) 10355 NR_029833 407031 NR_029833 ENSG00000207962 MIR30C1 MIRN30C1|mir-30c-1 microRNA 30c-1 ncRNA 164-43 chr3 187160749 187161269 + 0.5 NA Intergenic L2c|LINE|L2 -21513 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 167.5-20 chr19 1547588 1547943 + 0.5 NA Intergenic Intergenic 20293 NM_203304 399664 Hs.436495 NM_203304 ENSG00000181588 MEX3D MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO mex-3 RNA binding family member D protein-coding 221.667-45 chr9 96853783 96854485 + 0.5 NA 5' UTR (NM_001346991, exon 1 of 5) 5' UTR (NM_001346991, exon 1 of 5) 380 NM_001346995 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 191.5-21 chr16 62940657 62941397 + 0.5 NA Intergenic Intergenic -904589 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 165.667-4 chr1 157574036 157574431 + 0.5 NA 3' UTR (NM_031282, exon 12 of 12) 3' UTR (NM_031282, exon 12 of 12) -21718 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 172.333-32 chr2 140234402 140235053 + 0.5 NA intron (NM_018557, intron 90 of 90) intron (NM_018557, intron 90 of 90) 351958 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 226.834-9 chr3 151440999 151442067 + 0.5 NA promoter-TSS (NM_001178145) promoter-TSS (NM_001178145) -753 NM_001178146 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 164.5-6 chr10 53824536 53825083 + 0.5 NA intron (NM_001142773, intron 30 of 31) intron (NM_001142773, intron 30 of 31) -661421 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 167.5-45 chr9 75014064 75014520 + 0.5 NA intron (NM_001320497, intron 3 of 7) L1MC4a|LINE|L1 12859 NM_001320497 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 164.333-41 chr5 101193035 101193521 + 0.5 NA Intergenic L1ME3A|LINE|L1 -289996 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 172.833-20 chr3 196888184 196888699 + 0.5 NA intron (NM_152699, intron 2 of 9) AluSx|SINE|Alu 20521 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 171.667-63 chr9 102344328 102344895 + 0.5 NA Intergenic Intergenic -175026 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 177.833-7 chr12 65310628 65311123 + 0.5 NA intron (NM_001031679, intron 2 of 6) MIR|SINE|MIR 31888 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 166.833-16 chr2 229548200 229548694 + 0.5 NA intron (NM_139072, intron 4 of 12) L1PA7|LINE|L1 166108 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 184.833-26 chr5 33039937 33040523 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 92787 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 172.5-31 chr20 45358770 45359243 + 0.5 NA Intergenic Intergenic -2943 NM_001197129 90196 Hs.655055 NM_033542 ENSG00000204070 SYS1 C20orf169|dJ453C12.4|dJ453C12.4.1 SYS1 golgi trafficking protein protein-coding 178.833-26 chr22 26904936 26905397 + 0.5 NA intron (NR_110540, intron 1 of 2) intron (NR_110540, intron 1 of 2) 1874 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 170.833-31 chr6 52021735 52022402 + 0.5 NA intron (NM_138694, intron 33 of 66) intron (NM_138694, intron 33 of 66) 65545 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 185.667-2 chr1 70729833 70730341 + 0.5 NA intron (NR_125938, intron 5 of 6) intron (NR_125938, intron 5 of 6) 23634 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 182.333-27 chr8 87606936 87607345 + 0.5 NA Intergenic Intergenic 266875 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 167.333-34 chr22 41998927 41999431 + 0.5 NA TTS (NM_145733) TTS (NM_145733) 391 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 213.333-29 chr4 94371009 94371780 + 0.5 NA Intergenic Intergenic -28558 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 163.833-15 chr16 19582832 19583240 + 0.5 NA intron (NM_001300743, intron 7 of 27) intron (NM_001300743, intron 7 of 27) 27333 NM_001365293 57020 Hs.654964 NM_020314 ENSG00000103544 VPS35L C16orf62 VPS35 endosomal protein sorting factor like protein-coding 230-33 chr5 139403458 139403975 + 0.5 NA intron (NM_194296, intron 1 of 5) intron (NM_194296, intron 1 of 5) 371 NM_194296 202051 Hs.373612 NM_194296 ENSG00000170469 SPATA24 CCDC161|T6441 spermatogenesis associated 24 protein-coding 236.333-32 chr8 133485654 133486249 + 0.5 NA intron (NM_003033, intron 3 of 8) MIRc|SINE|MIR 85936 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 259-33 chr5 145258984 145259858 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 575921 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 311.333-21 chr7 12493462 12494679 + 0.5 NA Intergenic Intergenic -2359 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 201.167-26 chr6 25866916 25867508 + 0.5 NA intron (NM_006632, intron 2 of 11) L2|LINE|L2 7031 NM_001098486 10786 Hs.327179 NM_006632 ENSG00000124564 SLC17A3 GOUT4|NPT4|UAQTL4 solute carrier family 17 member 3 protein-coding 193.833-26 chr6 136937221 136937697 + 0.5 NA Intergenic Intergenic 15158 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 170.667-20 chr2 69570637 69571141 + 0.5 NA intron (NM_014911, intron 2 of 21) L2c|LINE|L2 -50718 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 164.167-3 chr1 161116105 161116708 + 0.5 NA intron (NM_012394, intron 1 of 3) AluSz|SINE|Alu 1631 NM_012394 5202 Hs.492516 NM_012394 ENSG00000143256 PFDN2 PFD2 prefoldin subunit 2 protein-coding 227-5 chr10 58921180 58921943 + 0.5 NA Intergenic Intergenic -77957 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 164.5-18 chr15 86954470 86954880 + 0.5 NA intron (NR_135683, intron 1 of 2) L1PA16|LINE|L1 21795 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 163.833-37 chr6 167215604 167216190 + 0.5 NA Intergenic AluSz|SINE|Alu -12403 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 169.5-48 chr9 123028619 123029068 + 0.5 NA intron (NM_012197, intron 13 of 25) MIR|SINE|MIR -4800 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 170-10 chr11 74324016 74324515 + 0.5 NA intron (NR_120556, intron 6 of 6) MLT1H-int|LTR|ERVL-MaLR -12625 NM_001288748 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 232.333-23 chr8 99192157 99192813 + 0.5 NA intron (NM_017890, intron 16 of 61) MIR|SINE|MIR 179219 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 188.333-15 chr14 47811528 47812001 + 0.5 NA Intergenic L1PB1|LINE|L1 -16750 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 174.667-56 chr8 78434390 78434889 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -81701 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 225.167-22 chr3 179811799 179812603 + 0.5 NA intron (NR_146167, intron 9 of 13) intron (NR_146167, intron 9 of 13) -85993 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 179.5-8 chr11 112356559 112357071 + 0.5 NA intron (NR_126004, intron 2 of 3) MER2|DNA|TcMar-Tigger 86066 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 221.167-26 chr6 126088079 126088569 + 0.5 NA Intergenic Intergenic 101784 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 192.667-31 chr6 45124771 45125214 + 0.5 NA intron (NM_001350325, intron 2 of 10) MLT1C|LTR|ERVL-MaLR 72778 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 171.167-32 chr5 150175700 150176304 + 0.5 NA intron (NM_001804, intron 1 of 2) MIR3|SINE|MIR 9224 NM_001804 1044 Hs.1545 NM_001804 ENSG00000113722 CDX1 - caudal type homeobox 1 protein-coding 168.333-30 chr2 9984993 9985383 + 0.5 NA intron (NM_198182, intron 8 of 15) intron (NM_198182, intron 8 of 15) 33495 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 179.833-18 chr2 183053285 183053876 + 0.5 NA Intergenic MER9a3|LTR|ERVK -15123 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 202.5-31 chr2 161053580 161054122 + 0.5 NA Intergenic Ricksha_0|DNA|MULE-MuDR -83104 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 173-19 chr15 70743800 70744202 + 0.5 NA intron (NM_018003, intron 1 of 18) AluY|SINE|Alu 19557 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 252-29 chr5 53123658 53124289 + 0.5 NA Intergenic Intergenic 14131 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 201.667-33 chr3 10365964 10366705 + 0.5 NA intron (NM_001001331, intron 12 of 22) intron (NM_001001331, intron 12 of 22) 28228 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 184.667-35 chr20 32322618 32323107 + 0.5 NA intron (NM_004798, intron 5 of 8) intron (NM_004798, intron 5 of 8) -35482 NM_015338 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 174.5-36 chr8 90610481 90611095 + 0.5 NA Intergenic HERV35I-int|LTR|ERV1 -4725 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 170.333-4 chr10 29070840 29071438 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -217931 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 182.833-12 chr14 25953813 25954179 + 0.5 NA Intergenic Intergenic 599434 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 256.667-23 chr5 101424071 101424973 + 0.5 NA Intergenic Intergenic -521240 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 187.5-30 chr4 148398329 148398951 + 0.5 NA intron (NM_000901, intron 2 of 8) MIRb|SINE|MIR 43774 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 219.667-30 chr7 80086756 80087528 + 0.5 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -47689 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 195-46 chr8 118516559 118517191 + 0.5 NA intron (NM_001101676, intron 2 of 4) AluSx|SINE|Alu -104126 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 164.833-7 chr15 89332449 89332945 + 0.5 NA intron (NM_001126131, intron 2 of 22) MER20|DNA|hAT-Charlie 2098 NM_002693 5428 Hs.706868 NM_002693 ENSG00000140521 POLG MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE DNA polymerase gamma, catalytic subunit protein-coding 164.333-31 chr20 55897700 55898115 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 107612 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 172-13 chr13 85799004 85799479 + 0.5 NA 5' UTR (NM_032229, exon 1 of 2) 5' UTR (NM_032229, exon 1 of 2) 178 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 203.833-6 chr14 73758480 73759145 + 0.5 NA promoter-TSS (NR_039727) promoter-TSS (NR_039727) 65 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 173.333-18 chr2 230597820 230598427 + 0.5 NA Intergenic L1P4a|LINE|L1 102406 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 197.833-12 chr14 62967861 62968585 + 0.5 NA intron (NM_139318, intron 6 of 10) intron (NM_139318, intron 6 of 10) 77235 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 168.5-23 chr2 31080991 31081407 + 0.5 NA intron (NM_001329095, intron 1 of 15) intron (NM_001329095, intron 1 of 15) 48441 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 215.833-17 chr22 39529731 39530361 + 0.5 NA intron (NM_194326, intron 2 of 3) intron (NM_194326, intron 2 of 3) 2702 NM_194326 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 197.667-42 chr5 139863706 139864646 + 0.5 NA intron (NM_013982, intron 5 of 10) intron (NM_013982, intron 5 of 10) 68368 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 189-36 chr3 153070318 153070770 + 0.5 NA Intergenic Intergenic -91682 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 188-33 chr22 21673670 21674345 + 0.5 NA intron (NM_148175, intron 5 of 20) intron (NM_148175, intron 5 of 20) 7995 NM_014337 23759 Hs.438587 NM_014337 ENSG00000100023 PPIL2 CYC4|CYP60|Cyp-60|UBOX7|hCyP-60 peptidylprolyl isomerase like 2 protein-coding 176.833-38 chr7 55511482 55511863 + 0.5 NA intron (NM_001321242, intron 2 of 4) MER4A1|LTR|ERV1 15208 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 186.5-4 chr12 71079664 71080142 + 0.5 NA Intergenic MIR|SINE|MIR 77906 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 181.5-58 chr9 106875914 106876344 + 0.5 NA intron (NM_001347997, intron 1 of 12) MIRb|SINE|MIR 12963 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 171.5-8 chr11 2150353 2150822 + 0.5 NA promoter-TSS (NM_001007139) promoter-TSS (NM_001007139) -984 NM_001007139 3481 Hs.272259 NM_000612 ENSG00000167244 IGF2 C11orf43|GRDF|IGF-II|PP9974 insulin like growth factor 2 protein-coding 185.167 chr1 51088199 51088599 + 0.5 NA Intergenic AluJr|SINE|Alu -13829 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 163.167-3 chr1 46339574 46339970 + 0.5 NA promoter-TSS (NR_045789) promoter-TSS (NR_045789) -405 NR_045789 387338 Hs.163424 NM_199044 ENSG00000117481 NSUN4 SHTAP NOP2/Sun RNA methyltransferase 4 protein-coding 166.5-11 chr12 50685676 50686070 + 0.5 NA exon (NM_173602, exon 11 of 38) exon (NM_173602, exon 11 of 38) -78228 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 180-7 chr10 94617616 94618056 + 0.5 NA Intergenic MER50|LTR|ERV1 -65893 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 190.833-9 chr12 110403692 110404084 + 0.5 NA promoter-TSS (NM_016238) promoter-TSS (NM_016238) -158 NM_016238 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 173.833-37 chr9 86737080 86737630 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 210151 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 194.333-19 chr15 41069509 41070201 + 0.5 NA intron (NM_017553, intron 13 of 35) intron (NM_017553, intron 13 of 35) 46391 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 193-3 chr1 169374903 169375395 + 0.5 NA intron (NM_003666, intron 2 of 7) L1ME4c|LINE|L1 6954 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 172.167-12 chr2 31738689 31739109 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 65081 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 190.833-25 chr8 82885102 82885565 + 0.5 NA Intergenic L1PA10|LINE|L1 -26771 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 185.667-24 chr19 27654077 27654633 + 0.5 NA Intergenic HSAT4|Satellite|centr -139076 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 164.333-52 chr8 121768682 121769057 + 0.5 NA Intergenic Intergenic -127429 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 204.5-29 chr5 65868948 65869568 + 0.5 NA Intergenic AluSx|SINE|Alu -57296 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 164.5-52 chr8 29085804 29086272 + 0.5 NA intron (NM_015254, intron 37 of 39) L3b|LINE|CR1 177032 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 177.667-7 chr12 42501348 42501962 + 0.5 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) -17645 NM_001144882 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 163.333-21 chr15 51782053 51782589 + 0.5 NA intron (NM_001142885, intron 6 of 8) L2b|LINE|L2 30724 NM_014548 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 187 chr1 23138855 23139562 + 0.5 NA intron (NM_033631, intron 1 of 4) intron (NM_033631, intron 1 of 4) 29648 NM_033631 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 165.5-41 chr7 117127813 117128220 + 0.5 NA intron (NR_161419, intron 3 of 15) intron (NR_161419, intron 3 of 15) 17576 NR_002331 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 192-12 chr14 44690403 44690987 + 0.5 NA Intergenic L1MB7|LINE|L1 108431 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 215.167-16 chr2 202505703 202506484 + 0.5 NA intron (NM_001204, intron 3 of 12) intron (NM_001204, intron 3 of 12) -128876 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 177.5-4 chr1 229714622 229715111 + 0.5 NA Intergenic LTR78B|LTR|ERV1 88619 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 182.167-21 chr4 31422816 31423472 + 0.5 NA Intergenic Charlie5|DNA|hAT-Charlie -83400 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 171.333-14 chr14 20675958 20676631 + 0.5 NA Intergenic Intergenic -7883 NM_001145 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 214.167-29 chr7 73900062 73900759 + 0.5 NA Intergenic Intergenic 39251 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 166.5-33 chr5 121671991 121672541 + 0.5 NA Intergenic Intergenic -179616 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 170.833-11 chr17 11598382 11598792 + 0.5 NA exon (NM_001372, exon 1 of 69) exon (NM_001372, exon 1 of 69) 117 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 210.667-9 chr11 95834602 95835174 + 0.5 NA 3' UTR (NM_201278, exon 17 of 17) 3' UTR (NM_201278, exon 17 of 17) 44390 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 231.5-37 chr8 123389983 123390446 + 0.5 NA intron (NM_014109, intron 1 of 27) AluSx|SINE|Alu 6233 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 165.833-11 chr12 42038930 42039385 + 0.5 NA Intergenic LTR8B|LTR|ERV1 105717 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 172.833-13 chr17 67274765 67275220 + 0.5 NA Intergenic AluSx|SINE|Alu -29796 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 176.167-39 chr6 132851359 132851860 + 0.5 NA Intergenic AluSx1|SINE|Alu 34390 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 167.5-21 chr2 101150362 101150935 + 0.5 NA intron (NM_001102426, intron 1 of 19) CpG 799 NM_001330348 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 208.167-22 chr6 162440115 162440866 + 0.5 NA intron (NM_004562, intron 2 of 11) MER94|DNA|hAT-Blackjack -286642 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 167.333-17 chr12 4679419 4680014 + 0.5 NA intron (NM_005002, intron 8 of 10) L2c|LINE|L2 30602 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 186.333-32 chr4 125586809 125587182 + 0.5 NA Intergenic Intergenic 79736 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 178.833 chr1 10320018 10320532 + 0.5 NA intron (NM_001365951, intron 23 of 48) intron (NM_001365951, intron 23 of 48) 21309 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 191.5-31 chr22 26067111 26067846 + 0.5 NA Intergenic LTR16C|LTR|ERVL -101984 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 208-10 chr12 49371186 49371722 + 0.5 NA intron (NM_023071, intron 2 of 13) L1MB3|LINE|L1 4549 NR_120663 65244 Hs.654826 NM_023071 ENSG00000123352 SPATS2 Nbla00526|P59SCR|SCR59|SPATA10 spermatogenesis associated serine rich 2 protein-coding 197.167-27 chr22 49482162 49482556 + 0.5 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 61107 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 164.5-14 chr14 53764206 53764658 + 0.5 NA Intergenic Intergenic 184052 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 201.5-30 chr5 122193584 122194226 + 0.5 NA Intergenic MER45A|DNA|hAT-Tip100 33729 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 178.667-11 chr11 75406883 75407311 + 0.5 NA TTS (NM_001260506) TTS (NM_001260506) 2676 NR_000025 114599 Hs.689080 NR_000025 ENSG00000207445 SNORD15B RNU15B|U15B small nucleolar RNA, C/D box 15B snoRNA 212.833-17 chr4 56941629 56942100 + 0.5 NA Intergenic Intergenic 32951 NM_001193508 5978 Hs.307836 NM_005612 ENSG00000084093 REST DFNA27|GINGF5|HGF5|NRSF|WT6|XBR RE1 silencing transcription factor protein-coding 188.167-18 chr2 15189281 15189838 + 0.5 NA intron (NR_052013, intron 48 of 50) intron (NR_052013, intron 48 of 50) 371775 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 196-22 chr2 115116604 115117382 + 0.5 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 44350 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 172.167-14 chr20 62906765 62907229 + 0.5 NA intron (NM_022105, intron 5 of 5) intron (NM_022105, intron 5 of 5) 19508 NM_001193370 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 197.833-32 chr8 78980215 78980915 + 0.5 NA Intergenic L1PA3|LINE|L1 143036 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 212.667-37 chr4 56230236 56230969 + 0.5 NA intron (NM_020722, intron 2 of 10) intron (NM_020722, intron 2 of 10) 60407 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 166.333-30 chr2 18105869 18106470 + 0.5 NA Intergenic MIR|SINE|MIR 227502 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 169.167-18 chr2 88319852 88320324 + 0.5 NA Intergenic Intergenic 132605 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 165.333-25 chr21 15826408 15826893 + 0.5 NA intron (NM_001283042, intron 13 of 24) intron (NM_001283042, intron 13 of 24) 96668 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 172-21 chr17 51001684 51002342 + 0.5 NA intron (NM_001130527, intron 11 of 29) intron (NM_001130527, intron 11 of 29) 44865 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 193.833-2 chr1 168108758 168109410 + 0.5 NA intron (NM_001267611, intron 1 of 5) L1MEd|LINE|L1 27352 NM_001267612 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 201.667-36 chr3 56730641 56731182 + 0.5 NA intron (NM_001128615, intron 12 of 12) MIR|SINE|MIR 44806 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 179-27 chr4 126275536 126276085 + 0.5 NA Intergenic Intergenic 768551 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 207 chr1 41409268 41409841 + 0.5 NA Intergenic MIR3|SINE|MIR -33885 NR_135817 101929901 NR_135817 ENSG00000229901 LOC101929901 - uncharacterized LOC101929901 ncRNA 182.333-21 chr5 35815443 35815838 + 0.5 NA Intergenic L2a|LINE|L2 -41251 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 202.167-26 chr3 34957988 34958508 + 0.5 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 435775 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 208.833-7 chr14 29528103 29528678 + 0.5 NA Intergenic Intergenic 398706 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 195.5-5 chr13 38686059 38686694 + 0.5 NA promoter-TSS (NM_207361) promoter-TSS (NM_207361) 299 NR_126377 101929121 Hs.618449 NR_126377 LINC00437 TCONS_00021639 long intergenic non-protein coding RNA 437 ncRNA 163.167-13 chr14 49473017 49473360 + 0.5 NA Intergenic L1MB2|LINE|L1 113192 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 205.833-14 chr17 60228309 60228767 + 0.5 NA intron (NM_032582, intron 12 of 33) AluJb|SINE|Alu 3107 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 224.333-29 chr5 88602380 88603179 + 0.5 NA intron (NR_152235, intron 2 of 3) CpG 64160 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 177-19 chr17 71225238 71225647 + 0.5 NA Intergenic Intergenic -23263 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 171.167-12 chr14 23381337 23381771 + 0.5 NA TTS (NM_002471) TTS (NM_002471) 4508 NM_001288744 116173 Hs.99272 NM_138460 ENSG00000166091 CMTM5 CKLFSF5 CKLF like MARVEL transmembrane domain containing 5 protein-coding 210.667-22 chr18 22933083 22933790 + 0.5 NA promoter-TSS (NR_039895) promoter-TSS (NR_039895) 87 NR_039895 100616139 NR_039895 ENSG00000284331 MIR4741 mir-4741 microRNA 4741 ncRNA 165.5-23 chr2 26724033 26724458 + 0.5 NA intron (NM_002246, intron 1 of 1) intron (NM_002246, intron 1 of 1) 31523 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 166.5-41 chr8 14504719 14505191 + 0.5 NA intron (NM_001322881, intron 2 of 6) L1MEh|LINE|L1 348555 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 214.833-19 chr8 17905597 17906347 + 0.5 NA Intergenic Intergenic -10434 NM_201552 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|HPS|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 233.333-15 chr19 28314126 28314736 + 0.5 NA Intergenic Intergenic -292257 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 183-9 chr11 12286358 12286861 + 0.5 NA promoter-TSS (NM_032867) promoter-TSS (NM_032867) -291 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 163.167-38 chr6 43394310 43394736 + 0.5 NA Intergenic Intergenic -24876 NM_014345 24149 Hs.509718 NM_014345 ENSG00000171467 ZNF318 HRIHFB2436|TZF|ZFP318 zinc finger protein 318 protein-coding 174-44 chr7 51789658 51790035 + 0.5 NA Intergenic L1MC2|LINE|L1 -396590 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 166.833-33 chr8 125002660 125003083 + 0.5 NA intron (NM_003129, intron 1 of 10) intron (NM_003129, intron 1 of 10) 4366 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 165.5-2 chr1 152003744 152004122 + 0.5 NA Intergenic Intergenic -10074 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 214.833-6 chr12 47705396 47706003 + 0.5 NA intron (NM_024604, intron 1 of 16) CpG 331 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 166.5-36 chr6 105040011 105040409 + 0.5 NA intron (NM_001004317, intron 3 of 3) L1M5|LINE|L1 83103 NM_001004317 389421 Hs.23616 NM_001004317 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B protein-coding 170.833-5 chr1 236524567 236525001 + 0.5 NA promoter-TSS (NR_034040) promoter-TSS (NR_034040) -276 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 193.333-20 chr14 65997656 65998508 + 0.5 NA Intergenic Intergenic -488289 NR_024338 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 182.667-31 chr20 61710328 61710966 + 0.5 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 9101 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 196.333-26 chr2 195120485 195121117 + 0.5 NA Intergenic Intergenic 390206 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 170.833-16 chr19 45605283 45605761 + 0.5 NA Intergenic AluSx1|SINE|Alu -3310 NM_005282 2828 Hs.17170 NM_005282 ENSG00000177464 GPR4 - G protein-coupled receptor 4 protein-coding 185.5-38 chr7 51069608 51070268 + 0.5 NA TTS (NM_001287438) TTS (NM_001287438) 246871 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 176.833-12 chr12 53618314 53619090 + 0.5 NA intron (NR_073163, intron 1 of 12) intron (NR_073163, intron 1 of 12) 7288 NM_001366556 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 167.167-5 chr1 66706516 66707071 + 0.5 NA intron (NM_001350218, intron 16 of 22) intron (NM_001350218, intron 16 of 22) -45666 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 171.833-5 chr11 65204402 65204886 + 0.5 NA intron (NR_040008, intron 9 of 20) intron (NR_040008, intron 9 of 20) -9196 NR_033396 440044 Hs.532372 NM_001004326 ENSG00000197847 SLC22A20P Oat6|SLC22A20 solute carrier family 22 member 20, pseudogene pseudo 191.5-23 chr2 43042091 43042887 + 0.5 NA Intergenic L2c|LINE|L2 -2946 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 194-42 chrX 135344155 135344661 + 0.5 NA promoter-TSS (NM_007131) promoter-TSS (NM_007131) -299 NR_110381 7626 Hs.371717 NM_007131 ENSG00000186376 ZNF75D D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28 zinc finger protein 75D protein-coding 177.333-16 chr2 160568163 160568622 + 0.5 NA Intergenic L1MC5a|LINE|L1 -74585 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 222-10 chr11 124583723 124584342 + 0.5 NA Intergenic MLT2C2|LTR|ERVL 14035 NM_001005194 390275 Hs.632104 NM_001005194 ENSG00000196119 OR8A1 OR11-318|OST025 olfactory receptor family 8 subfamily A member 1 protein-coding 233.333 chr1 150029620 150030263 + 0.5 NA Intergenic Intergenic -19215 NM_020205 56957 Hs.98322 NM_020205 ENSG00000264522 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 211.5-17 chr14 46740850 46741708 + 0.5 NA Intergenic Intergenic -89498 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 166.333-31 chr2 119820365 119820835 + 0.5 NA intron (NM_002830, intron 2 of 26) intron (NM_002830, intron 2 of 26) 60678 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 176-31 chr4 180727204 180727843 + 0.5 NA Intergenic Intergenic 431626 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 170-49 chr7 7512660 7513191 + 0.5 NA intron (NM_001037763, intron 8 of 34) Charlie10b|DNA|hAT-Charlie 22948 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 163.833-16 chr16 48382509 48382982 + 0.5 NA intron (NM_003031, intron 1 of 1) intron (NM_003031, intron 1 of 1) 2668 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 180-50 chr5 87012338 87013041 + 0.5 NA Intergenic Intergenic 102265 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 184-22 chr13 99923860 99924432 + 0.5 NA intron (NR_120421, intron 1 of 4) L1MB3|LINE|L1 33019 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 167.667-27 chr22 24080253 24080682 + 0.5 NA intron (NM_012295, intron 19 of 36) L1ME3Cz|LINE|L1 69097 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 228.667-50 chr7 120980997 120981593 + 0.5 NA Intergenic L1PB4|LINE|L1 -7416 NM_024913 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 176-6 chr10 50888142 50888527 + 0.5 NA Intergenic Intergenic -2659 NM_138932 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 199.167-4 chr12 112555753 112556191 + 0.5 NA Intergenic LTR45C|LTR|ERV1 -19264 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 260.5-25 chr8 66870010 66870770 + 0.5 NA promoter-TSS (NM_001136161) promoter-TSS (NM_001136161) -381 NM_173518 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 197.333-38 chr8 13584264 13584915 + 0.5 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) 17720 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 213.833-21 chr8 38061639 38062126 + 0.5 NA Intergenic Intergenic 31348 NM_004095 1978 Hs.411641 NM_004095 ENSG00000187840 EIF4EBP1 4E-BP1|4EBP1|BP-1|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 protein-coding 189.5-29 chr4 41360103 41360708 + 0.5 NA promoter-TSS (NM_001330792) promoter-TSS (NM_001330792) -402 NM_001112717 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 204.167-12 chr2 108280609 108281339 + 0.5 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -7921 NM_176825 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 214.333-5 chr10 65982858 65983340 + 0.5 NA intron (NM_001127384, intron 16 of 17) intron (NM_001127384, intron 16 of 17) 411674 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 187.5-46 chr9 87299352 87299781 + 0.5 NA Intergenic L1MA6|LINE|L1 150922 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 189.667-17 chr14 60392597 60393289 + 0.5 NA Intergenic L1MD|LINE|L1 69747 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 188.833-13 chr18 5641704 5642306 + 0.5 NA Intergenic Intergenic -13014 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 175.833-41 chr8 85057215 85057770 + 0.5 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -49746 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 170-33 chr2 174076796 174077310 + 0.5 NA intron (NM_001011708, intron 9 of 9) intron (NM_001011708, intron 9 of 9) 51773 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 169.167-19 chr2 227204164 227204626 + 0.5 NA intron (NM_000091, intron 1 of 51) intron (NM_000091, intron 1 of 51) 39830 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 239.333-15 chr2 205768699 205769426 + 0.5 NA intron (NM_201266, intron 15 of 16) intron (NM_201266, intron 15 of 16) 86561 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 164.667-49 chr6 46909408 46909984 + 0.5 NA non-coding (NR_110658, exon 4 of 4) non-coding (NR_110658, exon 4 of 4) 6225 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 188.833-7 chr11 98976344 98976971 + 0.5 NA Intergenic MSTB2|LTR|ERVL-MaLR -44292 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 185.667-4 chr1 182183310 182183699 + 0.5 NA Intergenic L3|LINE|CR1 -121792 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 196-40 chr6 63322017 63322574 + 0.5 NA Intergenic Intergenic -2312 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 202.167-9 chr12 62859639 62860215 + 0.5 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 75223 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 170.333-28 chr19 28420404 28420769 + 0.5 NA Intergenic Intergenic -186102 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 183.333-6 chr1 191553334 191553876 + 0.5 NA Intergenic Intergenic -325107 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 247-31 chr7 123794578 123795138 + 0.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -4147 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 201.667-55 chr9 128199630 128200160 + 0.5 NA intron (NM_012127, intron 1 of 16) AluSz|SINE|Alu -3484 NM_001288737 1759 Hs.522413 NM_004408 ENSG00000106976 DNM1 DNM|EIEE31 dynamin 1 protein-coding 170-38 chr3 136007217 136007699 + 0.5 NA intron (NM_002718, intron 2 of 13) intron (NM_002718, intron 2 of 13) -15284 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 199.333-33 chr3 81435786 81436520 + 0.5 NA Intergenic Intergenic 325492 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 164.833-23 chr9 121079280 121079794 + 0.5 NA intron (NM_001369894, intron 1 of 29) Tigger4a|DNA|TcMar-Tigger 4582 NM_001369896 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 175.167-17 chr16 49207775 49208193 + 0.5 NA Intergenic Intergenic 73854 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 235.833-4 chr12 10675834 10676423 + 0.5 NA Intergenic Intergenic -2076 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 189.833-9 chr14 64123726 64124230 + 0.5 NA intron (NM_015180, intron 70 of 114) AluSq2|SINE|Alu -28853 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 201.167-15 chr18 51342450 51343102 + 0.5 NA Intergenic Intergenic -49266 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 261.667-22 chr5 157313308 157313907 + 0.5 NA intron (NM_001037333, intron 11 of 30) Tigger17a|DNA|TcMar-Tigger 32070 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 188.167 chr1 25107548 25108008 + 0.5 NA Intergenic MIR|SINE|MIR 84275 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 164.833-17 chr7 73650862 73651402 + 0.5 NA Intergenic Intergenic -16699 NM_001077621 155382 Hs.647037 NM_152560 ENSG00000176428 VPS37D WBSCR24 VPS37D subunit of ESCRT-I protein-coding 174.333-36 chr6 55713094 55713533 + 0.5 NA Intergenic Intergenic -134099 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 172.333-46 chr5 109924002 109924557 + 0.5 NA Intergenic Intergenic 41097 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 195.167-20 chr17 48484484 48485001 + 0.5 NA Intergenic Intergenic 39909 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 189.333-18 chr14 86784944 86785404 + 0.5 NA Intergenic Intergenic -120604 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 177.833-23 chr2 112511127 112511838 + 0.5 NA intron (NM_153712, intron 5 of 6) L1MEf|LINE|L1 29326 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 198-14 chr16 58000818 58001315 + 0.5 NA promoter-TSS (NM_024598) promoter-TSS (NM_024598) -307 NM_024598 79650 Hs.408702 NM_024598 ENSG00000103005 USB1 C16orf57|HVSL1|Mpn1|PN|hUsb1 U6 snRNA biogenesis phosphodiesterase 1 protein-coding 166.334-6 chr5 9496562 9497409 + 0.333333 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -14348 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 183-34 chr3 67971891 67972881 + 0.333333 NA Intergenic L1MA8|LINE|L1 -19206 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 174.5-31 chr6 63882361 63883290 + 0.333333 NA intron (NM_001292009, intron 35 of 43) L2b|LINE|L2 75989 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 184.333-9 chr12 41576961 41577713 + 0.333333 NA Intergenic Intergenic 139598 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 168.333-51 chr4 99621802 99622505 + 0.333333 NA intron (NM_001300785, intron 17 of 17) intron (NM_001300785, intron 17 of 17) 32526 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 182-4 chr11 73982438 73983314 + 0.333333 NA promoter-TSS (NM_003355) promoter-TSS (NM_003355) -32 NM_003355 7351 Hs.80658 NM_003355 ENSG00000175567 UCP2 BMIQ4|SLC25A8|UCPH uncoupling protein 2 protein-coding 170.5-9 chr11 36186445 36187122 + 0.333333 NA intron (NM_001304264, intron 4 of 5) intron (NM_001304264, intron 4 of 5) 102641 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 165.333-9 chr10 98672289 98672868 + 0.333333 NA intron (NM_021828, intron 6 of 11) intron (NM_021828, intron 6 of 11) -225615 NM_001311345 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 188.167-14 chr17 74375844 74376563 + 0.333333 NA Intergenic Intergenic 8697 NM_001331077 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 167.667-36 chr6 17139822 17140640 + 0.333333 NA Intergenic MIRb|SINE|MIR 37973 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 163.167-27 chr20 57344341 57345287 + 0.333333 NA TTS (NM_012444) TTS (NM_012444) -6441 NM_003610 8480 Hs.371698 NM_003610 ENSG00000101146 RAE1 Gle2|MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1 ribonucleic acid export 1 protein-coding 174.833-7 chr12 21126749 21127548 + 0.333333 NA Intergenic L2a|LINE|L2 -4046 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 164.167-42 chr5 142359308 142359901 + 0.333333 NA intron (NR_120664, intron 3 of 3) Tigger3a|DNA|TcMar-Tigger 34311 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 165.5-6 chr10 61464702 61465309 + 0.333333 NA intron (NR_120643, intron 1 of 5) intron (NR_120643, intron 1 of 5) -11624 NR_134507 219623 Hs.623955 NM_178505 ENSG00000196932 TMEM26 - transmembrane protein 26 protein-coding 163.833-23 chr2 74535062 74535611 + 0.333333 NA exon (NM_001289164, exon 7 of 12) exon (NM_001289164, exon 7 of 12) -5630 NM_181575 550 Hs.411480 NM_181575 ENSG00000115307 AUP1 - AUP1 lipid droplet regulating VLDL assembly factor protein-coding 174.667-59 chr8 129662646 129663616 + 0.333333 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 17108 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 166.167-36 chr7 37781064 37781747 + 0.333333 NA Intergenic L1MA3|LINE|L1 -67192 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 184-32 chr22 35257028 35257765 + 0.333333 NA promoter-TSS (NR_027780) promoter-TSS (NR_027780) -97 NR_027780 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 212.667-19 chr18 62303900 62304721 + 0.333333 NA intron (NR_144409, intron 31 of 31) intron (NR_144409, intron 31 of 31) -20977 NM_001270950 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 201.667-26 chr20 32055043 32055918 + 0.333333 NA intron (NM_001172132, intron 2 of 13) L1ME4a|LINE|L1 3238 NM_001172133 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 168.667-43 chr6 36250050 36250696 + 0.333333 NA intron (NM_173676, intron 1 of 7) MLT1L|LTR|ERVL-MaLR 7205 NM_001145716 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 179.667-15 chr18 77054782 77055539 + 0.333333 NA intron (NM_001025100, intron 3 of 3) intron (NM_001025100, intron 3 of 3) -38105 NM_002385 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 169.333-37 chr2 197072459 197073163 + 0.333333 NA intron (NR_160034, intron 16 of 28) intron (NR_160034, intron 16 of 28) -125180 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 202.667-15 chr17 38871401 38872463 + 0.333333 NA intron (NR_073384, intron 1 of 7) intron (NR_073384, intron 1 of 7) 1874 NR_073384 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 207.667-6 chr11 84649103 84649977 + 0.333333 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 71402 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 197.833-7 chr11 6679344 6680143 + 0.333333 NA TTS (NM_022061) TTS (NM_022061) 3597 NM_022061 63875 Hs.523456 NM_022061 ENSG00000158042 MRPL17 L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26 mitochondrial ribosomal protein L17 protein-coding 170.667-26 chr20 58380590 58381464 + 0.333333 NA Intergenic MLT1G3|LTR|ERVL-MaLR -8092 NM_004738 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 197.167-36 chr7 11141946 11142789 + 0.333333 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 168495 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 178.5-7 chr11 18426314 18427268 + 0.333333 NA intron (NM_017448, intron 3 of 7) intron (NM_017448, intron 3 of 7) 14473 NM_017448 3948 Hs.654377 NM_002301 ENSG00000166796 LDHC CT32|LDH3|LDHX lactate dehydrogenase C protein-coding 165.833-23 chr2 110993954 110994522 + 0.333333 NA intron (NM_001371254, intron 14 of 18) LTR106_Mam|LTR|LTR 121350 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 171-40 chr20 54068304 54068971 + 0.333333 NA promoter-TSS (NR_039913) promoter-TSS (NR_039913) -152 NR_039913 100616225 NR_039913 ENSG00000265595 MIR4756 - microRNA 4756 ncRNA 193-23 chr21 17568548 17569315 + 0.333333 NA 3' UTR (NM_001338, exon 7 of 7) 3' UTR (NM_001338, exon 7 of 7) -42755 NR_149073 110806272 Hs.607138 NR_149073 ENSG00000280594 BTG3-AS1 ASBEL BTG3 antisense RNA 1 ncRNA 168-23 chr18 13734603 13735211 + 0.333333 NA intron (NM_003799, intron 4 of 11) intron (NM_003799, intron 4 of 11) 8234 NM_003799 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 202.333-16 chr15 62112381 62113112 + 0.333333 NA Intergenic Intergenic 45769 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 185.667-12 chr11 14160561 14161304 + 0.333333 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 197553 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 168.667-12 chr12 85916012 85916610 + 0.333333 NA Intergenic Intergenic 42016 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 214.666-5 chr5 61282118 61282799 + 0.333333 NA Intergenic Intergenic -17529 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 174.834-7 chr2 27735241 27736168 + 0.333333 NA intron (NR_160725, intron 2 of 2) CpG 19581 NR_160725 105374378 NR_160725 LOC105374378 - uncharacterized LOC105374378 ncRNA 176-39 chr7 26485400 26486158 + 0.333333 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) 53046 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 182.167-3 chr12 31500991 31501690 + 0.333333 NA intron (NM_001308339, intron 1 of 22) THE1C|LTR|ERVL-MaLR -88583 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 196.833-10 chr15 87212439 87213273 + 0.333333 NA Intergenic (ATTC)n|Simple_repeat|Simple_repeat -224430 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 186-13 chr17 26883735 26884550 + 0.333333 NA Intergenic ALR/Alpha|Satellite|centr 205099 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 184.5-22 chr2 9985555 9986461 + 0.333333 NA intron (NM_198182, intron 8 of 15) intron (NM_198182, intron 8 of 15) 34315 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 182-8 chr14 73756006 73756744 + 0.333333 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -2372 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 169-9 chr11 78742647 78743253 + 0.333333 NA intron (NM_001098816, intron 19 of 33) MIRc|SINE|MIR -168086 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding